BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus Liberibacter asiaticus str. psy62] (469 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus Liberibacter asiaticus str. psy62] gi|254547823|gb|ACT56901.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus Liberibacter asiaticus str. psy62] Length = 469 Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/469 (100%), Positives = 469/469 (100%) Query: 1 MGLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD 60 MGLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD Sbjct: 1 MGLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD 60 Query: 61 DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120 DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR Sbjct: 61 DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120 Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL Sbjct: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180 Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL Sbjct: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240 Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD Sbjct: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300 Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA Sbjct: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK Sbjct: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV Sbjct: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 >gi|315122124|ref|YP_004062613.1| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495526|gb|ADR52125.1| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 457 Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/457 (84%), Positives = 424/457 (92%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 MV Q V+Q + PQ+FFVKSYGCQMNVYDSLR+ED+FFS+GYER +S+DDADLIVLNTCHI Sbjct: 1 MVLQAVNQNLSPQKFFVKSYGCQMNVYDSLRIEDIFFSKGYERADSIDDADLIVLNTCHI 60 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 REKAAEKVYS LGRIRNLKNSRIKEG + +VVVAGCVAQAEGEEILRRSPIVNVVVGPQT Sbjct: 61 REKAAEKVYSSLGRIRNLKNSRIKEGRETIVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 120 Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 YYRLPELLERARFGKRVVDTDYS EDKFERLSIVDGGY R+R V AFLTIQEGCDKFCTF Sbjct: 121 YYRLPELLERARFGKRVVDTDYSAEDKFERLSIVDGGYKRRRSVAAFLTIQEGCDKFCTF 180 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 CVVPYTRG EISRSLSQ+V+EARKL+ +GV EITLLGQNVNAW GKGL+G+KC FSDLLY Sbjct: 181 CVVPYTRGAEISRSLSQIVEEARKLVASGVREITLLGQNVNAWCGKGLNGQKCNFSDLLY 240 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 SL++IK L+RLRYTTSHPRDMSDCLIKAHG+LD+LMPYLHLPVQSGSDRILKSMNRRHT Sbjct: 241 SLADIKSLIRLRYTTSHPRDMSDCLIKAHGELDILMPYLHLPVQSGSDRILKSMNRRHTV 300 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 YEY+QIIDRIRS+RP+IAISSDFIVGFPGE D DF TM+LV+ IGYAQAFSFKYSPR G Sbjct: 301 YEYQQIIDRIRSIRPNIAISSDFIVGFPGERDSDFEGTMNLVENIGYAQAFSFKYSPRPG 360 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 TPG+NML QV+E+VK ERLLCLQKKLREQQVSFN+ C+GQI+EVLIEK GKE+G+LVGRS Sbjct: 361 TPGANMLGQVEESVKTERLLCLQKKLREQQVSFNNDCIGQIVEVLIEKEGKERGQLVGRS 420 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 PWLQSVVL+ ++HNIGD++KVRITDVK TLYGE VV Sbjct: 421 PWLQSVVLDGRDHNIGDVVKVRITDVKTITLYGEFVV 457 >gi|222084693|ref|YP_002543222.1| 2-methylthioadenine synthetase (miaB-like) protein [Agrobacterium radiobacter K84] gi|221722141|gb|ACM25297.1| 2-methylthioadenine synthetase (miaB-like) protein [Agrobacterium radiobacter K84] Length = 470 Score = 612 bits (1577), Expect = e-173, Method: Compositional matrix adjust. Identities = 285/444 (64%), Positives = 354/444 (79%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM D GYE M++ADL++LNTCHIREKAAEKVYS L Sbjct: 27 RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 86 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R++K + +G ++++ V GCVAQAEGEEILRR+P V+VV+GPQTY+RLP+ L RA+ Sbjct: 87 GRLRDMKKRKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPDALRRAK 146 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+RVVDT+Y++EDKFE L + R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 147 EGQRVVDTEYALEDKFEHLPTPERSKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 206 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS++Q+V+EA KL+D GV EITLLGQNVNAW G G GE + DLLY LSEI GL RLR Sbjct: 207 RSVAQIVEEAEKLVDGGVREITLLGQNVNAWHGAGPKGEAWSLGDLLYRLSEIPGLARLR 266 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGS+RILK+MNRRHTA EY +I++IR+ Sbjct: 267 YTTSHPRDMDDRLISAHRDLRTLMPYLHLPVQSGSNRILKAMNRRHTAAEYFALIEKIRA 326 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIA+S DFIVGFPGET+ DF T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E Sbjct: 327 ARPDIALSGDFIVGFPGETEQDFADTLRLVEEVNYAQAFSFKYSTRPGTPGAELKDQVPE 386 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +KAERL LQ L +QQ +F DACVG++++VL+EK G+ G+L+GRSPWLQSV +++K Sbjct: 387 EIKAERLERLQALLLKQQHAFADACVGKVVDVLLEKPGRMPGQLIGRSPWLQSVNIDAKA 446 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IGDII VRIT ++L+ EL+ Sbjct: 447 SQIGDIINVRITGTSTNSLFAELL 470 >gi|116250164|ref|YP_766002.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium leguminosarum bv. viciae 3841] gi|123082073|sp|Q1MMB6|MIAB_RHIL3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|115254812|emb|CAK05886.1| putative MiaB protein (methylthiolation of isopentenylated A37 derivatives in rRNA) [Rhizobium leguminosarum bv. viciae 3841] Length = 473 Score = 605 bits (1559), Expect = e-171, Method: Compositional matrix adjust. Identities = 288/442 (65%), Positives = 353/442 (79%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS+RM D GYE M+ ADL++LNTCHIREKAAEKVYS L Sbjct: 26 RKVFIKTYGCQMNVYDSMRMSDALARDGYEPTEDMEVADLVLLNTCHIREKAAEKVYSAL 85 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K + +G ++++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+ Sbjct: 86 GRLREMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAK 145 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+RVVDT+Y++EDKFE L I + R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 146 QGQRVVDTEYAIEDKFEHLPIAESRRIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 205 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS+SQ+V+EA KL D+GV EITLLGQNVNAW G G GE + DLLY L+EI GL RLR Sbjct: 206 RSVSQIVEEAEKLADSGVREITLLGQNVNAWHGAGSQGEAWSLGDLLYRLAEIPGLARLR 265 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRHTA EY +I+RIR+ Sbjct: 266 YTTSHPRDMDDRLINAHRDLSALMPYLHLPVQSGSDRILKAMNRRHTAAEYLALIERIRT 325 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPDIA+S DFI GFPGETD+DF+ T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E Sbjct: 326 VRPDIALSGDFITGFPGETDEDFKDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 385 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +KAERL LQ L +QQ F ++CVG+ I++L+EK G+ +L+GRSPWLQSV +++K Sbjct: 386 EIKAERLERLQMLLLKQQQEFAESCVGKEIDLLLEKPGRMPEQLIGRSPWLQSVNVDAKA 445 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 IGDIIKVRIT ++L+ E Sbjct: 446 SQIGDIIKVRITGTGTNSLFAE 467 >gi|222147351|ref|YP_002548308.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Agrobacterium vitis S4] gi|221734341|gb|ACM35304.1| miaB protein [Agrobacterium vitis S4] Length = 477 Score = 605 bits (1559), Expect = e-171, Method: Compositional matrix adjust. Identities = 288/460 (62%), Positives = 359/460 (78%), Gaps = 4/460 (0%) Query: 10 VAHMVSQIVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68 V H +Q Q PQ+ F+K+YGCQMNVYDS RM D ++GY+ M++A L++LN Sbjct: 19 VEHASAQ---QKPAPQKKVFIKTYGCQMNVYDSSRMADALVAEGYQSTEDMEEASLVLLN 75 Query: 69 TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128 TCHIREKAA+KVYS LGR+R +K R G + ++ VAGCVAQAEGEEI+RR P V+VVV Sbjct: 76 TCHIREKAADKVYSALGRLREMKKIRAARGEEFMIGVAGCVAQAEGEEIVRREPGVDVVV 135 Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188 GPQTY+RLP+ L RAR G+RVVDTDY+VEDKFE L ++R +TAFLT+QEGCDK Sbjct: 136 GPQTYHRLPQALRRARGGERVVDTDYAVEDKFEHLPDPTKIAGKRRMITAFLTVQEGCDK 195 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248 FCTFCVVPYTRG E+SR L+Q++ EA++L+++GV EITLLGQNVNAW GKG DG + Sbjct: 196 FCTFCVVPYTRGSEVSRPLAQLLGEAQRLVESGVREITLLGQNVNAWHGKGPDGREMGLG 255 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 DLLY L+EI GL RLRYTTSHPRDM + LI+AH DL +LMPYLHLPVQSGSDRILK+MNR Sbjct: 256 DLLYKLAEIPGLARLRYTTSHPRDMDERLIEAHRDLRMLMPYLHLPVQSGSDRILKAMNR 315 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 RH A +Y ++DRIR RPDIAIS DFIVGFPGETD DF TM LV++IGYAQAFSFKYS Sbjct: 316 RHKAADYIALVDRIREARPDIAISGDFIVGFPGETDADFEDTMKLVERIGYAQAFSFKYS 375 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 PR GTPG++M + V E+VK ERL LQ+ L +QQ F + VGQ +++L+EK G+ G++ Sbjct: 376 PRPGTPGADMPDHVAEDVKTERLARLQELLLKQQHDFARSLVGQTMDLLLEKPGRMPGQI 435 Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +GRSPWLQSV +++K IGDII+VRITD+ ++L+ E+ Sbjct: 436 IGRSPWLQSVNVDAKPSQIGDIIQVRITDIGPNSLFAEVA 475 >gi|159184272|ref|NP_353388.2| miaB protein [Agrobacterium tumefaciens str. C58] gi|229890693|sp|Q7D1M2|MIAB_AGRT5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|159139599|gb|AAK86173.2| miaB protein [Agrobacterium tumefaciens str. C58] Length = 455 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 284/444 (63%), Positives = 354/444 (79%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS+RM D GY + M +ADL++LNTCHIREKAAEKVYS L Sbjct: 10 RKVFIKTYGCQMNVYDSVRMSDALAKDGYVQTEDMGEADLVLLNTCHIREKAAEKVYSAL 69 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R++K SR ++G + ++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLP+ L+R R Sbjct: 70 GRLRDMKKSREEQGREFMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPDALKRVR 129 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+RV++T+Y+VEDKFE L + + R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 130 RGERVIETEYAVEDKFEHLPVAEKATLRSRGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 189 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + Q+VDEA KL+D GV EITLLGQNVNAW+G+G GEK ++LLY L+EI GL RLR Sbjct: 190 RPVRQIVDEAMKLVDAGVREITLLGQNVNAWQGEGPKGEKWGLAELLYRLAEIPGLARLR 249 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL +LMPYLHLPVQSGSDRILK+MNRRHT EY Q+I++IRS Sbjct: 250 YTTSHPRDMDDRLIGAHRDLRILMPYLHLPVQSGSDRILKAMNRRHTGEEYIQLIEKIRS 309 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIA+S DFIVGFPGETD DF TM +V+ + YAQAFSFKYS R GTPG+++ +QV E Sbjct: 310 ARPDIAMSGDFIVGFPGETDRDFEDTMAMVETVKYAQAFSFKYSTRPGTPGADLTDQVAE 369 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +VKAERL LQ L QQ F ++ VG+ ++VL+EK G+ +L+GRSPWLQSV L++K Sbjct: 370 DVKAERLERLQALLLRQQKEFAESLVGKTMDVLLEKPGRMPEQLIGRSPWLQSVNLDAKT 429 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IGDI+ VRIT ++L+ E+ Sbjct: 430 LKIGDIVNVRITATGPNSLFAEVA 453 >gi|325291790|ref|YP_004277654.1| miaB protein [Agrobacterium sp. H13-3] gi|325059643|gb|ADY63334.1| miaB protein [Agrobacterium sp. H13-3] Length = 467 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 282/444 (63%), Positives = 354/444 (79%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS+RM D GY + M +ADL++LNTCHIREKAAEKVYS L Sbjct: 22 RKVFIKTYGCQMNVYDSVRMSDALAKDGYVQTEDMGEADLVLLNTCHIREKAAEKVYSAL 81 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R++K SR ++G + ++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLP+ L+R R Sbjct: 82 GRLRDMKKSREEQGREFVIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPDALKRVR 141 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+RV++T+Y+VEDKFE L + + R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 142 GGERVIETEYAVEDKFEHLPVAEKATLRTRGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 201 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + Q+VDEA KL+D GV EITLLGQNVNAW+G+G GEK ++LLY L+EI GL RLR Sbjct: 202 RPVRQIVDEAMKLVDAGVREITLLGQNVNAWQGEGSKGEKWGLAELLYRLAEIPGLARLR 261 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL +LMPYLHLPVQSGSDRILK+MNRRHT EY Q+I++IR+ Sbjct: 262 YTTSHPRDMDDRLIGAHRDLRILMPYLHLPVQSGSDRILKAMNRRHTGEEYIQLIEKIRA 321 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIA+S DFIVGFPGETD DF TM +++++ YAQAFSFKYS R GTPG+++ +QV E Sbjct: 322 ARPDIAMSGDFIVGFPGETDRDFEDTMAIIEQVKYAQAFSFKYSTRPGTPGADLTDQVAE 381 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VKAERL LQ L QQ F ++ VG+ ++VL+EK G+ +L+GRSPWLQSV L++K Sbjct: 382 EVKAERLERLQALLLRQQKEFAESLVGKTMDVLLEKPGRMPEQLIGRSPWLQSVNLDAKT 441 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IGDI+ VRIT ++L+ E+ Sbjct: 442 LKIGDIVNVRITATGPNSLFAEVA 465 >gi|241202785|ref|YP_002973881.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856675|gb|ACS54342.1| RNA modification enzyme, MiaB family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 473 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 285/442 (64%), Positives = 354/442 (80%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS+RM D GYE + M++ADL++LNTCHIREKAAEKVYS L Sbjct: 26 RKVFIKTYGCQMNVYDSMRMSDALARDGYEPTDDMEEADLVLLNTCHIREKAAEKVYSAL 85 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R++K + +G ++++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L A+ Sbjct: 86 GRLRDMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRLAK 145 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+RVVDT+Y++EDKFE L I + R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 146 QGQRVVDTEYAIEDKFEHLPIAESRRIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 205 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +SQ+V+EA KL D+GV EITLLGQNVNAW G G GE + DLLY L+EI GL RLR Sbjct: 206 RPVSQIVEEAEKLADSGVREITLLGQNVNAWHGAGPQGEAWSLGDLLYRLAEIPGLARLR 265 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRHTA EY +I+RIR+ Sbjct: 266 YTTSHPRDMDDRLINAHRDLSALMPYLHLPVQSGSDRILKAMNRRHTAAEYLTLIERIRT 325 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPDIA+S DFI GFPGETD+DF+ T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E Sbjct: 326 VRPDIALSGDFITGFPGETDEDFKDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 385 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +KAERL LQ L +QQ F ++C+G+ I++L+EK G+ +L+GRSPWLQSV +++K Sbjct: 386 EIKAERLERLQMLLLKQQQEFAESCIGKEIDLLLEKPGRMPEQLIGRSPWLQSVNVDAKA 445 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 IGDIIKVRIT ++L+ E Sbjct: 446 SQIGDIIKVRITGTGTNSLFAE 467 >gi|327188593|gb|EGE55803.1| putative 2-methylthioadenine synthetase (miaB-like) protein [Rhizobium etli CNPAF512] Length = 482 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 286/442 (64%), Positives = 352/442 (79%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM D GYE M++ADL++LNTCHIREKAAEKVYS L Sbjct: 35 RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 94 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K + +G ++++ V GCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+ Sbjct: 95 GRLREMKKKKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAQ 154 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+RVVDT+Y++EDKFE L I + R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 155 QGQRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 214 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +SQ+V+EA KL++ GV EITLLGQNVNAW G G GE + DLLY L+EI GL RLR Sbjct: 215 RPVSQIVEEAEKLVEAGVREITLLGQNVNAWHGAGPRGEAWSLGDLLYRLAEIPGLARLR 274 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI+AH DL LMPYLHLPVQSGSDRILK+MNRRHTA EY +IDRIR+ Sbjct: 275 YTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYLSLIDRIRT 334 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPDIA+S DFI GFPGETD DF T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E Sbjct: 335 VRPDIALSGDFITGFPGETDADFEDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 394 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +KAERL LQ L +QQ F ++C+G+ I++L+EK G+ G+L+GRSPWLQSV +++K+ Sbjct: 395 EIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGRMPGQLIGRSPWLQSVNVDAKS 454 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 IGDIIKVRIT ++L+ E Sbjct: 455 SQIGDIIKVRITGTGTNSLFAE 476 >gi|86356033|ref|YP_467925.1| putative 2-methylthioadenine synthetase (miaB-like) protein [Rhizobium etli CFN 42] gi|123724853|sp|Q2KD88|MIAB_RHIEC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|86280135|gb|ABC89198.1| putative 2-methylthioadenine synthetase (miaB-like) protein [Rhizobium etli CFN 42] Length = 469 Score = 601 bits (1550), Expect = e-170, Method: Compositional matrix adjust. Identities = 285/442 (64%), Positives = 351/442 (79%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM D GYE M++ADL++LNTCHIREKAAEKVYS L Sbjct: 22 RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 81 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K + +G ++++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+ Sbjct: 82 GRLREMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAK 141 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+RVVDT+Y++EDKFE L + + R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 142 EGQRVVDTEYAIEDKFEHLPVAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 201 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +SQ+V+EA KL++ GV EITLLGQNVNAW G G GE + DLLY L+EI GL RLR Sbjct: 202 RPVSQIVEEAEKLVEGGVREITLLGQNVNAWHGAGPRGEAWSLGDLLYRLAEIPGLARLR 261 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRHTA EY +I+RIR+ Sbjct: 262 YTTSHPRDMDDRLIAAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYLSLIERIRA 321 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPDIA+S DFI GFPGETD DF T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E Sbjct: 322 VRPDIALSGDFITGFPGETDKDFEDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 381 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +KAERL LQ L +QQ F ++C+G+ I++L+EK G+ G+L+GRSPWLQSV +++K Sbjct: 382 EIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGRMPGQLIGRSPWLQSVNVDAKA 441 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 IGDIIKVRIT ++L+ E Sbjct: 442 SQIGDIIKVRITGTGTNSLFAE 463 >gi|190890046|ref|YP_001976588.1| 2-methylthioadenine synthetase (miaB-like) protein [Rhizobium etli CIAT 652] gi|229890624|sp|B3PZB6|MIAB_RHIE6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|190695325|gb|ACE89410.1| putative 2-methylthioadenine synthetase (miaB-like) protein [Rhizobium etli CIAT 652] Length = 469 Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust. Identities = 285/442 (64%), Positives = 351/442 (79%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM D GYE M++ADL++LNTCHIREKAAEKVYS L Sbjct: 22 RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 81 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K + +G ++++ V GCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+ Sbjct: 82 GRLREMKKKKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAQ 141 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+RVVDT+Y++EDKFE L I + R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 142 QGQRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 201 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +SQ+V+EA KL++ GV EITLLGQNVNAW G G GE + DLLY L+EI GL RLR Sbjct: 202 RPVSQIVEEAEKLVEAGVREITLLGQNVNAWHGAGPRGEAWSLGDLLYRLAEIPGLARLR 261 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI+AH DL LMPYLHLPVQSGSDRILK+MNRRHTA EY +I+RIR+ Sbjct: 262 YTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYLSLIERIRT 321 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPDIA+S DFI GFPGETD DF T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E Sbjct: 322 VRPDIALSGDFITGFPGETDADFEDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 381 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +KAERL LQ L +QQ F ++C+G+ I++L+EK G+ G+L+GRSPWLQSV +++K Sbjct: 382 EIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGRMPGQLIGRSPWLQSVNVDAKA 441 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 IGDIIKVRIT ++L+ E Sbjct: 442 SQIGDIIKVRITGTGTNSLFAE 463 >gi|218515353|ref|ZP_03512193.1| putative 2-methylthioadenine synthetase (miaB-like) protein [Rhizobium etli 8C-3] Length = 452 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 285/442 (64%), Positives = 351/442 (79%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM D GYE M++ADL++LNTCHIREKAAEKVYS L Sbjct: 5 RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K + +G ++++ V GCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+ Sbjct: 65 GRLREMKKKKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAQ 124 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+RVVDT+Y++EDKFE L I + R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 125 QGQRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 184 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +SQ+V+EA KL++ GV EITLLGQNVNAW G G GE + DLLY L+EI GL RLR Sbjct: 185 RPVSQIVEEAEKLVEAGVREITLLGQNVNAWHGAGPRGEAWSLGDLLYRLAEIPGLARLR 244 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI+AH DL LMPYLHLPVQSGSDRILK+MNRRHTA EY +I+RIR+ Sbjct: 245 YTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYLSLIERIRT 304 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPDIA+S DFI GFPGETD DF T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E Sbjct: 305 VRPDIALSGDFITGFPGETDADFEDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 364 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +KAERL LQ L +QQ F ++C+G+ I++L+EK G+ G+L+GRSPWLQSV +++K Sbjct: 365 EIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGRMPGQLIGRSPWLQSVNVDAKA 424 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 IGDIIKVRIT ++L+ E Sbjct: 425 SQIGDIIKVRITGTGTNSLFAE 446 >gi|227820628|ref|YP_002824598.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Sinorhizobium fredii NGR234] gi|227339627|gb|ACP23845.1| putative tRNA-i(6)A37 modification enzyme MiaB [Sinorhizobium fredii NGR234] Length = 466 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 282/450 (62%), Positives = 351/450 (78%) Query: 19 DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78 D+ + ++ FVK+YGCQMNVYDS RM D GY + ++DAD ++LNTCHIREKAAE Sbjct: 16 DEHVPARKVFVKTYGCQMNVYDSDRMSDALSRDGYVATDVLEDADFVLLNTCHIREKAAE 75 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 KVYS LGR+R LK ++ EG ++++ VAGCVAQAEG EILRR+P V++V+GPQTY+RLPE Sbjct: 76 KVYSELGRLRELKKAKASEGREMVIGVAGCVAQAEGNEILRRAPAVDLVIGPQTYHRLPE 135 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 L+RAR G+RVV+TDY++EDKFE L D R RGVTAFLT+QEGCDKFCTFCVVPYT Sbjct: 136 ALKRARSGERVVETDYAIEDKFEHLPAPDKAKTRSRGVTAFLTVQEGCDKFCTFCVVPYT 195 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG E+SR ++Q++ EA KL+D GV EITLLGQNVNAW G G +G DLL L EI Sbjct: 196 RGAEVSRPVAQILAEAEKLVDGGVREITLLGQNVNAWHGAGPNGRDWGLGDLLRRLGEID 255 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL RLRYTTSHPRDM + LI+AH + LMPYLHLPVQSGSDRILK+MNRRHTA EY + Sbjct: 256 GLARLRYTTSHPRDMDESLIEAHRSMAKLMPYLHLPVQSGSDRILKAMNRRHTAAEYLAL 315 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++RIR+V+PD+A+S DFIVGFPGET+ DF TM LV+ +GYAQAFSFKYS R GTPG+++ Sbjct: 316 VERIRAVQPDLALSGDFIVGFPGETEADFEETMRLVEVVGYAQAFSFKYSTRPGTPGADL 375 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 +QV E+VKA+RL LQ L QQ F ACVG+ I++L+EK G+ G+LVGRSPWLQ V Sbjct: 376 KDQVPEDVKAKRLERLQSLLVNQQRDFAAACVGREIDLLLEKPGRMPGQLVGRSPWLQPV 435 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +++K IGDIIKVRIT ++L+ E++ Sbjct: 436 NVDAKRSQIGDIIKVRITKAGSNSLFAEMI 465 >gi|150395268|ref|YP_001325735.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Sinorhizobium medicae WSM419] gi|229890663|sp|A6U5H0|MIAB_SINMW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|150026783|gb|ABR58900.1| RNA modification enzyme, MiaB family [Sinorhizobium medicae WSM419] Length = 472 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 282/447 (63%), Positives = 351/447 (78%), Gaps = 1/447 (0%) Query: 23 VPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 VP R FVK+YGCQMNVYDS RM D GY + +++AD ++LNTCHIREKAAEKVY Sbjct: 19 VPARKVFVKTYGCQMNVYDSDRMSDALSRDGYVATDVLEEADFVLLNTCHIREKAAEKVY 78 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGR+R+LK ++ +EG ++L+ VAGCVAQAEG+EILRR+P V++V+GPQTY+RLPE L Sbjct: 79 SELGRLRDLKKAKAREGREMLIGVAGCVAQAEGKEILRRAPAVDLVIGPQTYHRLPEALR 138 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 RAR G+R+V+TDY++EDKF L D R RGVTAFLT+QEGCDKFCTFCVVPYTRG Sbjct: 139 RARTGERIVETDYAIEDKFVHLPAPDKAKTRARGVTAFLTVQEGCDKFCTFCVVPYTRGS 198 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++Q+V EA KL++ GV EITLLGQNVNAW G G G + DLL L EI+GL Sbjct: 199 EVSRPVAQIVAEAEKLVEGGVREITLLGQNVNAWHGAGPHGREWGLGDLLRRLGEIEGLA 258 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLRYTTSHPRDM D LI+AH + LMPYLHLPVQSGSDRILK+MNRRHTA EY ++ R Sbjct: 259 RLRYTTSHPRDMDDSLIEAHRSMAKLMPYLHLPVQSGSDRILKAMNRRHTAAEYLALVAR 318 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+V+PD+A+S DFIVGFPGETD+DF T+ LVD + YAQAFSFKYS R GTPG+ + +Q Sbjct: 319 IRAVQPDLALSGDFIVGFPGETDEDFEDTLRLVDAVNYAQAFSFKYSTRPGTPGAELEQQ 378 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V E+VKA+RL LQ L +QQ F +ACVG+ I++L+EK G+ G+LVGRSPWLQ V ++ Sbjct: 379 VPEDVKAKRLEILQALLIKQQRGFAEACVGREIDLLLEKPGRMPGQLVGRSPWLQPVNVD 438 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +K IGDII+VRIT ++L+ E++ Sbjct: 439 AKASQIGDIIRVRITKAGPNSLFAEMI 465 >gi|209547631|ref|YP_002279548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|229890625|sp|B5ZMY1|MIAB_RHILW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|209533387|gb|ACI53322.1| RNA modification enzyme, MiaB family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 469 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 285/442 (64%), Positives = 350/442 (79%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM D GYE M++ADL++LNTCHIREKAAEKVYS L Sbjct: 22 RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 81 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R++K + +G ++++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+ Sbjct: 82 GRLRDMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAK 141 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+RVVDTDY++EDKFE L I + R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 142 EGQRVVDTDYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 201 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++Q+V+EA KL++ GV EITLLGQNVNAW G G GE + DLLY L+EI GL RLR Sbjct: 202 RPVAQIVEEAEKLVEGGVREITLLGQNVNAWHGAGPRGEAWSLGDLLYRLAEIPGLARLR 261 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRHTA EY +I RIR+ Sbjct: 262 YTTSHPRDMDDRLIDAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYLSLIARIRT 321 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPDIA+S DFI GFPGETD DF T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E Sbjct: 322 VRPDIALSGDFITGFPGETDADFEDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 381 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +KAERL LQ L +QQ F ++C+G+ I++L+EK G+ +L+GRSPWLQSV +++K Sbjct: 382 QIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGRMPEQLIGRSPWLQSVNVDAKA 441 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 IGDIIKVRIT ++L+ E Sbjct: 442 SQIGDIIKVRITGTGNNSLFAE 463 >gi|307301303|ref|ZP_07581065.1| RNA modification enzyme, MiaB family [Sinorhizobium meliloti BL225C] gi|307317974|ref|ZP_07597411.1| RNA modification enzyme, MiaB family [Sinorhizobium meliloti AK83] gi|306896376|gb|EFN27125.1| RNA modification enzyme, MiaB family [Sinorhizobium meliloti AK83] gi|306903759|gb|EFN34346.1| RNA modification enzyme, MiaB family [Sinorhizobium meliloti BL225C] Length = 472 Score = 592 bits (1525), Expect = e-167, Method: Compositional matrix adjust. Identities = 280/447 (62%), Positives = 350/447 (78%), Gaps = 1/447 (0%) Query: 23 VPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 VP R FVK+YGCQMNVYDS RM D GY + ++DAD ++LNTCHIREKAAEKVY Sbjct: 19 VPARKVFVKTYGCQMNVYDSDRMSDALSRDGYVATDVLEDADFVLLNTCHIREKAAEKVY 78 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGR+R LK ++ EG ++L+ VAGCVAQAEG+EILRR P V++V+GPQTY+RLP+ L+ Sbjct: 79 SELGRLRELKKAKALEGREMLIGVAGCVAQAEGDEILRRVPAVDLVIGPQTYHRLPDALK 138 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 RAR G+R+V+T+Y++EDKF L D R RGVTAFLT+QEGCDKFCTFCVVPYTRG Sbjct: 139 RARAGQRIVETEYAIEDKFVHLPAPDKAKTRARGVTAFLTVQEGCDKFCTFCVVPYTRGS 198 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++Q+V EA KL++ GV EITLLGQNVNAW G+G G + + DLL L EI GL Sbjct: 199 EVSRPVAQIVAEAEKLVEGGVREITLLGQNVNAWHGEGPHGREWSLGDLLRRLGEIDGLA 258 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLRYTTSHPRDM D LI+AH + LMPYLHLPVQSGSDRILK+MNRRHTA EY +++R Sbjct: 259 RLRYTTSHPRDMDDSLIEAHRSMAKLMPYLHLPVQSGSDRILKAMNRRHTAAEYLALVER 318 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ +PD+A+S DFIVGFPGETD DF T+ LV+++ YAQAFSFKYS R GTPG+ + EQ Sbjct: 319 IRAAQPDLALSGDFIVGFPGETDQDFEDTLRLVEEVNYAQAFSFKYSTRPGTPGAELKEQ 378 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V E+VKA+RL LQ L +QQ F +ACVG+ I++L+EK G+ G+LVGRSPWLQ V ++ Sbjct: 379 VPEDVKAKRLEILQALLVKQQRGFAEACVGREIDLLLEKPGRMPGQLVGRSPWLQPVNVD 438 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +K IGDII+VRIT ++L+ E++ Sbjct: 439 AKASQIGDIIRVRITKAGPNSLFAEMI 465 >gi|15964158|ref|NP_384511.1| hypothetical protein SMc01115 [Sinorhizobium meliloti 1021] gi|81635228|sp|Q92SI7|MIAB_RHIME RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|15073334|emb|CAC41842.1| Probable tRNA-i(6)A37 modification enzyme, 2-methylthioadenine synthetase [Sinorhizobium meliloti 1021] Length = 472 Score = 591 bits (1524), Expect = e-167, Method: Compositional matrix adjust. Identities = 280/447 (62%), Positives = 350/447 (78%), Gaps = 1/447 (0%) Query: 23 VPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 VP R FVK+YGCQMNVYDS RM D GY + ++DAD ++LNTCHIREKAAEKVY Sbjct: 19 VPARKVFVKTYGCQMNVYDSDRMSDALSRDGYVATDVLEDADFVLLNTCHIREKAAEKVY 78 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGR+R LK ++ EG ++L+ VAGCVAQAEG+EILRR P V++V+GPQTY+RLP+ L+ Sbjct: 79 SELGRLRELKKAKALEGREMLIGVAGCVAQAEGDEILRRVPAVDLVIGPQTYHRLPDALK 138 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 RAR G+R+V+T+Y++EDKF L D R RGVTAFLT+QEGCDKFCTFCVVPYTRG Sbjct: 139 RARAGQRIVETEYAIEDKFVHLPAPDKAKTRARGVTAFLTVQEGCDKFCTFCVVPYTRGS 198 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++Q+V EA KL++ GV EITLLGQNVNAW G+G G + + DLL L EI GL Sbjct: 199 EVSRPVAQIVAEAEKLVEGGVREITLLGQNVNAWHGEGPHGREWSLGDLLRRLGEIDGLA 258 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLRYTTSHPRDM D LI+AH + LMPYLHLPVQSGSDRILK+MNRRHTA EY +++R Sbjct: 259 RLRYTTSHPRDMDDSLIEAHRSMAKLMPYLHLPVQSGSDRILKAMNRRHTAAEYLALVER 318 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ +PD+A+S DFIVGFPGETD DF T+ LV+++ YAQAFSFKYS R GTPG+ + EQ Sbjct: 319 IRAAQPDLALSGDFIVGFPGETDQDFEDTLRLVEEVNYAQAFSFKYSTRPGTPGAELKEQ 378 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V E+VKA+RL LQ L +QQ F +ACVG+ I++L+EK G+ G+LVGRSPWLQ V ++ Sbjct: 379 VPEDVKAKRLEILQALLVKQQRGFAEACVGREIDLLLEKPGRMPGQLVGRSPWLQPVNVD 438 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +K IGDII+VRIT ++L+ E++ Sbjct: 439 AKASQIGDIIRVRITKAGPNSLFAEMI 465 >gi|319779782|ref|YP_004139258.1| RNA modification enzyme, MiaB family [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165670|gb|ADV09208.1| RNA modification enzyme, MiaB family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 469 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 275/444 (61%), Positives = 342/444 (77%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM D + GY +++ +ADL++LNTCHIREKAAEKVYS L Sbjct: 26 RKVFIKTYGCQMNVYDSQRMADALAADGYSATDAIGEADLVLLNTCHIREKAAEKVYSEL 85 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GRIR++K R G ++LV VAGCVAQAEG EI+RRSP V++V+GPQTY+RLP++L R R Sbjct: 86 GRIRDMKAERALAGREMLVGVAGCVAQAEGAEIIRRSPAVDLVIGPQTYHRLPDVLARVR 145 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+++V+TDY++EDKFE L KRGVTAFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 146 GGEKIVETDYAIEDKFEHLPQPKRAEVIKRGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 205 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++Q+V EA +L + GV E+TLLGQNVNAW G+G +G + LL+ L+EI GL RLR Sbjct: 206 RPVAQIVAEAERLAEAGVREVTLLGQNVNAWHGQGENGHEWGLGRLLFRLAEIPGLARLR 265 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRHTA +Y ++DRIR+ Sbjct: 266 YTTSHPRDMDDELIAAHRDLPSLMPYLHLPVQSGSDRILKAMNRRHTARDYLALLDRIRT 325 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIA+S DFIVGFPGET+ DF ATM+LV ++ YA AFSFKYSPR GTPG+ M + V E Sbjct: 326 ARPDIALSGDFIVGFPGETEADFEATMELVRQVNYASAFSFKYSPRPGTPGAEMADHVPE 385 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L +QQ F + +G I+ LIEK G++ G+ VGRSPWLQ V+++ K Sbjct: 386 TVKDERLQRLQALLVKQQQDFGLSLIGSTIDTLIEKPGRQTGQKVGRSPWLQPVIVDEKA 445 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IGDII+VRIT ++L+ EL Sbjct: 446 GEIGDIIQVRITKTGYNSLFAELA 469 >gi|163844167|ref|YP_001628572.1| RNA modification protein [Brucella suis ATCC 23445] gi|229890454|sp|B0CK00|MIAB_BRUSI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|163674890|gb|ABY39001.1| RNA modification enzyme, MiaB family [Brucella suis ATCC 23445] Length = 467 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 270/442 (61%), Positives = 345/442 (78%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVK+YGCQMNVYDS RM D ++GY ++ DDADL++LNTCHIREKA+EK+YS L Sbjct: 23 RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K++R +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP L R R Sbjct: 83 GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++VV+TDY++EDKFE L RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG + +LL+ L+ I G+ RLR Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLR 262 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR+ Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRN 322 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPD+A+S DFIVGFPGETD DF TM LV + YAQA+SFKYSPRLGTPG+++ + V+E Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRLGTPGADLDDHVEE 382 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL V+++ Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 +GDII V+I ++L + Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464 >gi|163757739|ref|ZP_02164828.1| RNA modification enzyme, MiaB family protein [Hoeflea phototrophica DFL-43] gi|162285241|gb|EDQ35523.1| RNA modification enzyme, MiaB family protein [Hoeflea phototrophica DFL-43] Length = 480 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 274/455 (60%), Positives = 342/455 (75%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 Q D ++ FVK+YGCQMNVYDS RM D GY+ V+S++ ADL+++NTCHIR Sbjct: 12 AGQPADAGTATKKVFVKTYGCQMNVYDSERMGDALSRDGYQPVDSVEAADLVLINTCHIR 71 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133 EKAAEKVYS LGR+ LK R EGGDL+V VAGCVAQAEGEE++RR+P+V+VV+GPQTY Sbjct: 72 EKAAEKVYSQLGRLAQLKKRRNSEGGDLMVAVAGCVAQAEGEEMIRRAPVVDVVIGPQTY 131 Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193 +RLP L +AR G+RVV+T++ EDKF+RL G R RGVTAFLT+QEGCDKFCTFC Sbjct: 132 HRLPGALAKARNGERVVETEFPTEDKFDRLPDASAGTIRTRGVTAFLTVQEGCDKFCTFC 191 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 VVPYTRG E+SR + +++ EA +L GV E+TLLGQNVNAW G+G DG + +L++ Sbjct: 192 VVPYTRGAEVSRPVERIMSEAERLAAAGVREVTLLGQNVNAWHGQGSDGREWGLGELVHR 251 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 L+ I+G+ R+RYTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRHTA Sbjct: 252 LAAIEGIDRIRYTTSHPRDMDDALINAHRDLPELMPYLHLPVQSGSDRILKAMNRRHTAA 311 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 EY ++++RIR RPDIA+S DFIVGFPGETD+DF TM L+ ++ YA AFSFKYS R GT Sbjct: 312 EYIRLVERIRMARPDIALSGDFIVGFPGETDEDFEDTMRLIREVNYAAAFSFKYSIRPGT 371 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 PG+ M QVDE VK+ERL LQ + EQ F CVG+ ++L+EK G+ +LVGRSP Sbjct: 372 PGAGMDGQVDEAVKSERLTRLQALINEQTRDFGRQCVGKTADLLLEKPGRNTDQLVGRSP 431 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 WLQ V++++K IGDI+ +RI + LY E V Sbjct: 432 WLQPVIVDAKAGKIGDIVNMRIMQTGSNGLYAEPV 466 >gi|23503001|ref|NP_699128.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella suis 1330] gi|161620062|ref|YP_001593949.1| RNA modification protein [Brucella canis ATCC 23365] gi|225626520|ref|ZP_03784559.1| RNA modification enzyme, MiaB family protein [Brucella ceti str. Cudo] gi|254705152|ref|ZP_05166980.1| RNA modification protein [Brucella suis bv. 3 str. 686] gi|254707331|ref|ZP_05169159.1| RNA modification protein [Brucella pinnipedialis M163/99/10] gi|254709128|ref|ZP_05170939.1| RNA modification protein [Brucella pinnipedialis B2/94] gi|254713447|ref|ZP_05175258.1| RNA modification protein [Brucella ceti M644/93/1] gi|254716197|ref|ZP_05178008.1| RNA modification protein [Brucella ceti M13/05/1] gi|256030653|ref|ZP_05444267.1| RNA modification protein [Brucella pinnipedialis M292/94/1] gi|256158655|ref|ZP_05456538.1| RNA modification protein [Brucella ceti M490/95/1] gi|256254059|ref|ZP_05459595.1| RNA modification protein [Brucella ceti B1/94] gi|260169557|ref|ZP_05756368.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella sp. F5/99] gi|260567379|ref|ZP_05837849.1| RNA modification protein [Brucella suis bv. 4 str. 40] gi|261217971|ref|ZP_05932252.1| RNA modification protein [Brucella ceti M13/05/1] gi|261221200|ref|ZP_05935481.1| RNA modification protein [Brucella ceti B1/94] gi|261314813|ref|ZP_05954010.1| RNA modification protein [Brucella pinnipedialis M163/99/10] gi|261316628|ref|ZP_05955825.1| RNA modification protein [Brucella pinnipedialis B2/94] gi|261321179|ref|ZP_05960376.1| RNA modification protein [Brucella ceti M644/93/1] gi|261755857|ref|ZP_05999566.1| RNA modification protein [Brucella suis bv. 3 str. 686] gi|261759085|ref|ZP_06002794.1| RNA modification protein [Brucella sp. F5/99] gi|265987700|ref|ZP_06100257.1| RNA modification protein [Brucella pinnipedialis M292/94/1] gi|265997161|ref|ZP_06109718.1| RNA modification protein [Brucella ceti M490/95/1] gi|294851378|ref|ZP_06792051.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella sp. NVSL 07-0026] gi|81751814|sp|Q8FXU4|MIAB_BRUSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890452|sp|A9M9Y3|MIAB_BRUC2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|23349040|gb|AAN31043.1| conserved hypothetical protein [Brucella suis 1330] gi|161336873|gb|ABX63178.1| RNA modification enzyme, MiaB family [Brucella canis ATCC 23365] gi|225618177|gb|EEH15220.1| RNA modification enzyme, MiaB family protein [Brucella ceti str. Cudo] gi|260156897|gb|EEW91977.1| RNA modification protein [Brucella suis bv. 4 str. 40] gi|260919784|gb|EEX86437.1| RNA modification protein [Brucella ceti B1/94] gi|260923060|gb|EEX89628.1| RNA modification protein [Brucella ceti M13/05/1] gi|261293869|gb|EEX97365.1| RNA modification protein [Brucella ceti M644/93/1] gi|261295851|gb|EEX99347.1| RNA modification protein [Brucella pinnipedialis B2/94] gi|261303839|gb|EEY07336.1| RNA modification protein [Brucella pinnipedialis M163/99/10] gi|261739069|gb|EEY27065.1| RNA modification protein [Brucella sp. F5/99] gi|261745610|gb|EEY33536.1| RNA modification protein [Brucella suis bv. 3 str. 686] gi|262551629|gb|EEZ07619.1| RNA modification protein [Brucella ceti M490/95/1] gi|264659897|gb|EEZ30158.1| RNA modification protein [Brucella pinnipedialis M292/94/1] gi|294819967|gb|EFG36966.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella sp. NVSL 07-0026] Length = 467 Score = 578 bits (1490), Expect = e-163, Method: Compositional matrix adjust. Identities = 269/442 (60%), Positives = 344/442 (77%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVK+YGCQMNVYDS RM D ++GY ++ DDADL++LNTCHIREKA+EK+YS L Sbjct: 23 RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K++R +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP L R R Sbjct: 83 GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++VV+TDY++EDKFE L RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG + +LL+ L+ I G+ RLR Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLR 262 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR+ Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRN 322 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPD+A+S DFIVGFPGETD DF TM LV + YAQA+SFKYSPR GTPG+++ + V+E Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEE 382 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL V+++ Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 +GDII V+I ++L + Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464 >gi|254700783|ref|ZP_05162611.1| RNA modification protein [Brucella suis bv. 5 str. 513] gi|261751292|ref|ZP_05995001.1| RNA modification protein [Brucella suis bv. 5 str. 513] gi|261741045|gb|EEY28971.1| RNA modification protein [Brucella suis bv. 5 str. 513] Length = 467 Score = 578 bits (1490), Expect = e-163, Method: Compositional matrix adjust. Identities = 269/442 (60%), Positives = 344/442 (77%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVK+YGCQMNVYDS RM D ++GY ++ DDADL++LNTCHIREKA+EK+YS L Sbjct: 23 RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K++R +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP L R R Sbjct: 83 GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++VV+TDY++EDKFE L RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG + +LL+ L+ I G+ RLR Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLR 262 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR+ Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRN 322 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPD+A+S DFIVGFPGETD DF TM LV + YAQA+SFKYSPR GTPG+++ + V+E Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEE 382 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL V+++ Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 +GDII V+I ++L + Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464 >gi|110636243|ref|YP_676451.1| RNA modification protein [Mesorhizobium sp. BNC1] gi|122965426|sp|Q11BD9|MIAB_MESSB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|110287227|gb|ABG65286.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chelativorans sp. BNC1] Length = 475 Score = 578 bits (1489), Expect = e-163, Method: Compositional matrix adjust. Identities = 274/442 (61%), Positives = 345/442 (78%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVK+YGCQMNVYDS RM D ++GY + ++DADL++LNTCHIREKAAEKVYS L Sbjct: 25 KKVFVKTYGCQMNVYDSQRMADALAAEGYRATDVIEDADLVLLNTCHIREKAAEKVYSEL 84 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GRIR LK R K+G + +V VAGCVAQAEG EILRR+P V++V+GPQTY+RLP ++ RAR Sbjct: 85 GRIRVLKEERAKQGRETVVGVAGCVAQAEGREILRRAPAVDLVIGPQTYHRLPSVVTRAR 144 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+++V+T+Y+VEDKF+ L + R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 145 AGEKIVETEYAVEDKFDHLPAPERTAVRSRGVTAFLTVQEGCDKFCTFCVVPYTRGAEVS 204 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++Q+V EA +L + GV E+TLLGQNVNAW G+G DG + LL+ L+EI GL RLR Sbjct: 205 RPVAQIVAEAERLAEAGVRELTLLGQNVNAWHGEGPDGREWGLGRLLFRLAEIPGLDRLR 264 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM + LI AH DL LMPYLHLPVQ+GSDRILK+MNR+HTA +Y ++I+RIR+ Sbjct: 265 YTTSHPRDMDEELIAAHRDLIKLMPYLHLPVQAGSDRILKAMNRKHTAADYLRLIERIRA 324 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIA+S DFIVGFPGETD DF TM +V + YAQAFSFKYSPR GTPG++M +QV + Sbjct: 325 ARPDIAMSGDFIVGFPGETDRDFEDTMRIVRDVNYAQAFSFKYSPRPGTPGADMHDQVPD 384 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L EQQ +F ++ VG I++L+EK G++ G+LVGRSPWLQ V++ Sbjct: 385 AVKDERLQRLQALLAEQQRAFGESLVGTEIDLLLEKPGRQAGQLVGRSPWLQPVIVEENA 444 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 IGDI++VRIT +L+ E Sbjct: 445 GQIGDIVRVRITSSGGHSLFCE 466 >gi|306843571|ref|ZP_07476172.1| RNA modification enzyme, MiaB family [Brucella sp. BO1] gi|306276262|gb|EFM57962.1| RNA modification enzyme, MiaB family [Brucella sp. BO1] Length = 467 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 269/442 (60%), Positives = 344/442 (77%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVK+YGCQMNVYDS RM D ++GY ++ DDADL++LNTCHIREKA+EK+YS L Sbjct: 23 RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K++R +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP L R R Sbjct: 83 GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++VV+TDY++EDKFE L RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG + +LL+ L+ I G+ RLR Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLR 262 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRD 322 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPD+A+S DFIVGFPGETD DF TM LV ++ YAQA+SFKYSPR GTPG+++ + V+E Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMRLVREVNYAQAYSFKYSPRPGTPGADLDDHVEE 382 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL V+++ Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 +GDII V+I ++L + Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464 >gi|306842738|ref|ZP_07475380.1| RNA modification enzyme, MiaB family [Brucella sp. BO2] gi|306287082|gb|EFM58587.1| RNA modification enzyme, MiaB family [Brucella sp. BO2] Length = 467 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 269/442 (60%), Positives = 343/442 (77%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVK+YGCQMNVYDS RM D ++GY ++ DDADL++LNTCHIREKA+EK+YS L Sbjct: 23 RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K++R +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP L R R Sbjct: 83 GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++VV+TDY++EDKFE L RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG + +LL+ L+ I G+ RLR Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLR 262 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRD 322 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPD+A+S DFIVGFPGETD DF TM LV ++ YAQA+SFKYSPR GTPG+++ + V+E Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVREVNYAQAYSFKYSPRPGTPGADLDDHVEE 382 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L QQ F D+ +G+ ++VL+EK G+E G++VGRSPWL V+++ Sbjct: 383 AVKDERLQRLQALLSAQQYDFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 +GDII V+I ++L + Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464 >gi|62290991|ref|YP_222784.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella abortus bv. 1 str. 9-941] gi|82700900|ref|YP_415474.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella melitensis biovar Abortus 2308] gi|189025203|ref|YP_001935971.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella abortus S19] gi|237816493|ref|ZP_04595486.1| RNA modification enzyme, MiaB family [Brucella abortus str. 2308 A] gi|254690285|ref|ZP_05153539.1| hypothetical protein Babob68_08952 [Brucella abortus bv. 6 str. 870] gi|254694773|ref|ZP_05156601.1| hypothetical protein Babob3T_08948 [Brucella abortus bv. 3 str. Tulya] gi|254731314|ref|ZP_05189892.1| hypothetical protein Babob42_08980 [Brucella abortus bv. 4 str. 292] gi|256258538|ref|ZP_05464074.1| hypothetical protein Babob9C_14557 [Brucella abortus bv. 9 str. C68] gi|260546254|ref|ZP_05821994.1| RNA modification protein [Brucella abortus NCTC 8038] gi|260755825|ref|ZP_05868173.1| RNA modification protein [Brucella abortus bv. 6 str. 870] gi|260759048|ref|ZP_05871396.1| RNA modification protein [Brucella abortus bv. 4 str. 292] gi|260884850|ref|ZP_05896464.1| RNA modification protein [Brucella abortus bv. 9 str. C68] gi|261215100|ref|ZP_05929381.1| RNA modification protein [Brucella abortus bv. 3 str. Tulya] gi|297247377|ref|ZP_06931095.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus bv. 5 str. B3196] gi|75496027|sp|Q57AB1|MIAB_BRUAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|123740938|sp|Q2YQS8|MIAB_BRUA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890451|sp|B2S9E5|MIAB_BRUA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|62197123|gb|AAX75423.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82617001|emb|CAJ12110.1| Deoxyribonuclease/rho motif-related TRAM:Protein of unknown function UPF0004:tRNA-i(6)A37 modification enzyme MiaB:Elongator [Brucella melitensis biovar Abortus 2308] gi|189020775|gb|ACD73497.1| hypothetical protein BAbS19_I20150 [Brucella abortus S19] gi|237788560|gb|EEP62775.1| RNA modification enzyme, MiaB family [Brucella abortus str. 2308 A] gi|260096361|gb|EEW80237.1| RNA modification protein [Brucella abortus NCTC 8038] gi|260669366|gb|EEX56306.1| RNA modification protein [Brucella abortus bv. 4 str. 292] gi|260675933|gb|EEX62754.1| RNA modification protein [Brucella abortus bv. 6 str. 870] gi|260874378|gb|EEX81447.1| RNA modification protein [Brucella abortus bv. 9 str. C68] gi|260916707|gb|EEX83568.1| RNA modification protein [Brucella abortus bv. 3 str. Tulya] gi|297174546|gb|EFH33893.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus bv. 5 str. B3196] Length = 467 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 268/442 (60%), Positives = 344/442 (77%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVK+YGCQMNVYDS RM D ++GY ++ DDADL++LNTCHIREKA+EK+YS L Sbjct: 23 RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R ++++R +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP L R R Sbjct: 83 GRLRKMRDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++VV+TDY++EDKFE L RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG + +LL+ L+ I G+ RLR Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLR 262 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR+ Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRN 322 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPD+A+S DFIVGFPGETD DF TM LV + YAQA+SFKYSPR GTPG+++ + V+E Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEE 382 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL V+++ Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 +GDII V+I ++L + Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464 >gi|254718191|ref|ZP_05180002.1| RNA modification protein [Brucella sp. 83/13] gi|265983149|ref|ZP_06095884.1| RNA modification protein [Brucella sp. 83/13] gi|306837705|ref|ZP_07470574.1| RNA modification enzyme, MiaB family [Brucella sp. NF 2653] gi|264661741|gb|EEZ32002.1| RNA modification protein [Brucella sp. 83/13] gi|306407263|gb|EFM63473.1| RNA modification enzyme, MiaB family [Brucella sp. NF 2653] Length = 467 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 269/442 (60%), Positives = 344/442 (77%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVK+YGCQMNVYDS RM D ++GY ++ DDADL++LNTCHIREKA+EK+YS L Sbjct: 23 RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K++R +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP L R R Sbjct: 83 GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++VV+TDY++EDKFE L RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRCEETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG + +LL+ L+ I G+ RLR Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLR 262 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRD 322 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPD+A+S DFIVGFPGETD DF TM LV ++ YAQA+SFKYSPR GTPG+++ + V+E Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVREVNYAQAYSFKYSPRPGTPGADLDDHVEE 382 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL V+++ Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 +GDII V+I ++L + Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464 >gi|148559930|ref|YP_001259948.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella ovis ATCC 25840] gi|229890453|sp|A5VTA1|MIAB_BRUO2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|148371187|gb|ABQ61166.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella ovis ATCC 25840] Length = 467 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 268/442 (60%), Positives = 343/442 (77%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVK+YGCQMNVYDS RM D ++GY ++ DDADL++LNTCHIREKA+EK+YS L Sbjct: 23 RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K++R +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP L R R Sbjct: 83 GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++VV+TDY++EDKFE L RKRGV+AFL +QEGCDKFCTFCVVPYTRG E+S Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLAVQEGCDKFCTFCVVPYTRGSEVS 202 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG + +LL+ L+ I G+ RLR Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLR 262 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR+ Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRN 322 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPD+A+S DFIVGFPGETD DF TM LV + YAQA+SFKYSPR GTPG+++ + V+E Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEE 382 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL V+++ Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 +GDII V+I ++L + Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464 >gi|17988259|ref|NP_540893.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella melitensis bv. 1 str. 16M] gi|225853579|ref|YP_002733812.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella melitensis ATCC 23457] gi|256045757|ref|ZP_05448635.1| RNA modification enzyme, MiaB family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256112476|ref|ZP_05453397.1| RNA modification enzyme, MiaB family protein [Brucella melitensis bv. 3 str. Ether] gi|256262937|ref|ZP_05465469.1| RNA modification protein [Brucella melitensis bv. 2 str. 63/9] gi|260563053|ref|ZP_05833539.1| RNA modification protein [Brucella melitensis bv. 1 str. 16M] gi|265992174|ref|ZP_06104731.1| RNA modification protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993912|ref|ZP_06106469.1| RNA modification protein [Brucella melitensis bv. 3 str. Ether] gi|81851031|sp|Q8YEA2|MIAB_BRUME RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|17984028|gb|AAL53157.1| miab protein [Brucella melitensis bv. 1 str. 16M] gi|225641944|gb|ACO01858.1| RNA modification enzyme, MiaB family protein [Brucella melitensis ATCC 23457] gi|260153069|gb|EEW88161.1| RNA modification protein [Brucella melitensis bv. 1 str. 16M] gi|262764893|gb|EEZ10814.1| RNA modification protein [Brucella melitensis bv. 3 str. Ether] gi|263003240|gb|EEZ15533.1| RNA modification protein [Brucella melitensis bv. 1 str. Rev.1] gi|263092811|gb|EEZ16986.1| RNA modification protein [Brucella melitensis bv. 2 str. 63/9] gi|326410151|gb|ADZ67216.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella melitensis M28] gi|326539870|gb|ADZ88085.1| RNA modification enzyme, MiaB family protein [Brucella melitensis M5-90] Length = 467 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 268/442 (60%), Positives = 343/442 (77%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVK+YGCQMNVYDS RM D ++GY ++ DDADL++LNTCHIREKA+EK+YS L Sbjct: 23 RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K++R +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP L R R Sbjct: 83 GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++VV+TDY++EDKFE L RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG + +LL+ L+ I G+ LR Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIAHLR 262 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR+ Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRN 322 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPD+A+S DFIVGFPGETD DF TM LV + YAQA+SFKYSPR GTPG+++ + V+E Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEE 382 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL V+++ Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 +GDII V+I ++L + Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464 >gi|153008094|ref|YP_001369309.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ochrobactrum anthropi ATCC 49188] gi|229890580|sp|A6WWX6|MIAB_OCHA4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|151559982|gb|ABS13480.1| RNA modification enzyme, MiaB family [Ochrobactrum anthropi ATCC 49188] Length = 462 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 270/442 (61%), Positives = 343/442 (77%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVK+YGCQMNVYDS RM D ++GY ++ DDADL++LNTCHIREKA+EK+YS L Sbjct: 18 RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K++R G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP L R R Sbjct: 78 GRLRKMKDAREANGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 137 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++VV+T+Y++EDKFE L RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 138 SGEKVVETEYALEDKFEHLPSPKREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 197 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS+ Q+V EA +L D+GV E+TLLGQNVNAW G G DG + +LL+ L+ I G+ RLR Sbjct: 198 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGAGDDGREWGLGELLFRLARIPGIARLR 257 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR Sbjct: 258 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYVRLIERIRE 317 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPD+A+S DFIVGFPGETD DF TM LV + YAQA+SFKYSPR GTPG+++ + V+E Sbjct: 318 VRPDLALSGDFIVGFPGETDQDFEDTMRLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEE 377 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L EQQ +F D+ +G+ ++VL+EK G+ G++VGRSPWL V+++ N Sbjct: 378 AVKDERLQRLQALLSEQQYAFQDSMIGREMDVLLEKPGRVAGQMVGRSPWLLPVIIDDSN 437 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 +GDII V+IT ++L + Sbjct: 438 DRVGDIIHVKITSTGTNSLIAQ 459 >gi|256060114|ref|ZP_05450296.1| RNA modification protein [Brucella neotomae 5K33] gi|261324091|ref|ZP_05963288.1| RNA modification protein [Brucella neotomae 5K33] gi|261300071|gb|EEY03568.1| RNA modification protein [Brucella neotomae 5K33] Length = 467 Score = 575 bits (1481), Expect = e-162, Method: Compositional matrix adjust. Identities = 268/442 (60%), Positives = 343/442 (77%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVK+YGCQMNVYDS RM D ++GY ++ DDADL++LNTCHIREKA+EK+YS L Sbjct: 23 RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K++R +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP L R R Sbjct: 83 GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++VV+TDY++EDKFE L RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 143 GGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 202 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS+ Q+V EA +L D+GV E+TLLGQNVNAW G+ DG + +LL+ L+ I G+ RLR Sbjct: 203 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEVEDGREWGLGELLFRLARIPGIARLR 262 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR+ Sbjct: 263 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRN 322 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPD+A+S DFIVGFPGETD DF TM LV + YAQA+SFKYSPR GTPG+++ + V+E Sbjct: 323 VRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEE 382 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL V+++ Sbjct: 383 AVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNK 442 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 +GDII V+I ++L + Sbjct: 443 DRVGDIIHVKIVSTGTNSLIAQ 464 >gi|239833202|ref|ZP_04681531.1| RNA modification enzyme, MiaB family [Ochrobactrum intermedium LMG 3301] gi|239825469|gb|EEQ97037.1| RNA modification enzyme, MiaB family [Ochrobactrum intermedium LMG 3301] Length = 462 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 270/442 (61%), Positives = 343/442 (77%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVK+YGCQMNVYDS RM D ++GY ++ DDADL++LNTCHIREKA+EK+YS L Sbjct: 18 RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K++R G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP L R R Sbjct: 78 GRLRKMKDAREANGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 137 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++VV+T+Y++EDKFE L RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 138 SGEKVVETEYALEDKFEHLPSPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVS 197 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS+ Q+V EA +L D+GV E+TLLGQNVNAW G G DG + +LL+ L+ I G+ RLR Sbjct: 198 RSVKQIVAEAERLADSGVRELTLLGQNVNAWHGAGDDGREWGLGELLFRLARIPGIARLR 257 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR Sbjct: 258 YTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYVRLIERIRE 317 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPD+A+S DFIVGFPGETD DF TM LV ++ YAQA+SFKYSPR GTPG+++ + V+E Sbjct: 318 VRPDMALSGDFIVGFPGETDQDFEDTMQLVREVNYAQAYSFKYSPRPGTPGADLDDHVEE 377 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L EQQ +F D+ +G+ ++VL+EK G+ G++VGRSPWL V+++ Sbjct: 378 AVKDERLQRLQALLSEQQYAFQDSMIGREMDVLLEKPGRVAGQMVGRSPWLLPVIIDDNQ 437 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 IGDII V+IT ++L + Sbjct: 438 DRIGDIIHVKITSTGTNSLIAQ 459 >gi|13474614|ref|NP_106183.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mesorhizobium loti MAFF303099] gi|81778168|sp|Q98BK3|MIAB_RHILO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|14025368|dbj|BAB51969.1| mlr5534 [Mesorhizobium loti MAFF303099] Length = 450 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 275/449 (61%), Positives = 345/449 (76%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 + ++ F+K+YGCQMNVYDS RM D + GY +++D+ADL++LNTCHIREKAAEK Sbjct: 2 RATAAKKVFIKTYGCQMNVYDSQRMGDALAADGYTATDAIDEADLVLLNTCHIREKAAEK 61 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 VYS LGRIR++K R G +LL+ VAGCVAQAEG EI+RRSP V++V+GPQTY+RLP++ Sbjct: 62 VYSELGRIRDMKAERAIAGRELLIGVAGCVAQAEGAEIIRRSPAVDLVIGPQTYHRLPDV 121 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 L R R G+++V+TDY++EDKF+ L KRGVTAFLT+QEGCDKFCTFCVVPYTR Sbjct: 122 LARVRGGEKIVETDYAIEDKFDHLPQPKRAEVIKRGVTAFLTVQEGCDKFCTFCVVPYTR 181 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E+SR ++Q+V EA +L + GV E+TLLGQNVNAW G+G +GE+ LL+ L+EI G Sbjct: 182 GSEVSRPVAQIVAEAERLAEAGVREVTLLGQNVNAWHGQGENGEEWGLGRLLFRLAEIPG 241 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L RLRYTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRHTA +Y ++ Sbjct: 242 LARLRYTTSHPRDMDDELISAHRDLPSLMPYLHLPVQSGSDRILKAMNRRHTARDYLALL 301 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 DRIR+ RPDIA+S DFIVGFPGET+ DF ATM+LV ++ YA AFSFKYSPR GTPG+ M Sbjct: 302 DRIRAARPDIALSGDFIVGFPGETEADFEATMELVRQVNYASAFSFKYSPRPGTPGAEMP 361 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 + V E +K ERL LQ L +QQ F + VG I+ LIEK G++ G+ VGR+PWLQ V+ Sbjct: 362 DHVPETLKDERLQRLQALLLKQQQGFGSSLVGSTIDTLIEKPGRQAGQKVGRTPWLQPVI 421 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ K IGDII+VRIT ++L+ EL Sbjct: 422 VDEKAGEIGDIIQVRITKTGYNSLFAELA 450 >gi|254470768|ref|ZP_05084171.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudovibrio sp. JE062] gi|211959910|gb|EEA95107.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudovibrio sp. JE062] Length = 470 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 267/455 (58%), Positives = 342/455 (75%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 ++ +++ ++ F+K+YGCQMNVYDS RM D + GYE+ + DDADL++LNTCHIR Sbjct: 16 ATEALEKTEATRKVFIKTYGCQMNVYDSDRMNDALSNDGYEKTENPDDADLVILNTCHIR 75 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133 EKAAEKVYS LGRIR LK + K+G ++V VAGCVAQAEG EI RR+P+V++VVGPQ+Y Sbjct: 76 EKAAEKVYSELGRIRKLKEEKAKDGKQMMVSVAGCVAQAEGAEISRRAPVVDLVVGPQSY 135 Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193 +RLPELL RA G +VV+T++ ++DKF+ L+ RKRGVTAF+T+QEGCDKFCTFC Sbjct: 136 HRLPELLTRASNGSKVVETEFDIQDKFKHLATPSKEAVRKRGVTAFVTVQEGCDKFCTFC 195 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 VVPYTRG E+SR + Q+V E +L GV E+TLLGQNVNAW G+G DG + +LL+ Sbjct: 196 VVPYTRGAEVSRKVEQIVMETERLAAAGVREVTLLGQNVNAWHGEGPDGREWGLGELLFR 255 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 L++I G+ RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSD ILK+MNR+HT Sbjct: 256 LAKIDGIERLRYTTSHPRDMEDSLIAAHRDLDILMPYLHLPVQSGSDAILKAMNRKHTRD 315 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 +Y ++IDRIR R DIA+S DFIVGFPGETD D + T+DL+ ++ Y AFSFKYSPR GT Sbjct: 316 DYFRLIDRIREARDDIALSGDFIVGFPGETDQDHKDTLDLIRRVTYGSAFSFKYSPRPGT 375 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 PG+ + EQ+DE VK+ERL LQ+ L QQ FN + +G+ I+VL EK G+ +G+L GRSP Sbjct: 376 PGATLEEQIDEQVKSERLAELQELLSTQQKDFNASLIGKTIDVLFEKEGRREGQLAGRSP 435 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 WLQ V +N+ G+I V I ++L G LV Sbjct: 436 WLQPVHVNAPLDLYGEIRSVEIVAASANSLEGRLV 470 >gi|260461993|ref|ZP_05810238.1| RNA modification enzyme, MiaB family [Mesorhizobium opportunistum WSM2075] gi|259032240|gb|EEW33506.1| RNA modification enzyme, MiaB family [Mesorhizobium opportunistum WSM2075] Length = 473 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 275/453 (60%), Positives = 341/453 (75%), Gaps = 4/453 (0%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 + ++ F+K+YGCQMNVYDS RM D + GY ++ +ADL++LNTCHIREKAAEK Sbjct: 21 HAVAAKKVFIKTYGCQMNVYDSQRMADALAADGYTATGAIGEADLVLLNTCHIREKAAEK 80 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 VYS LGRIR++K R G +LL+ VAGCVAQAEG EI+RRSP V++V+GPQTY+RLP++ Sbjct: 81 VYSELGRIRDMKAERASVGRELLIGVAGCVAQAEGAEIIRRSPAVDLVIGPQTYHRLPDV 140 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 L R R G+++V+TDY++EDKFE L KRGVTAFLT+QEGCDKFCTFCVVPYTR Sbjct: 141 LARVRGGEKIVETDYAIEDKFEHLPQPKRAEVIKRGVTAFLTVQEGCDKFCTFCVVPYTR 200 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG----KGLDGEKCTFSDLLYSLS 255 G E+SR ++Q+V EA +L + GV E+TLLGQNVNAW G KG E+ LL+ L+ Sbjct: 201 GSEVSRPVAQIVAEAERLAEAGVREVTLLGQNVNAWHGQGDTKGGRTEEWGLGRLLHRLA 260 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 +I GL RLRYTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRHTA +Y Sbjct: 261 QIPGLARLRYTTSHPRDMDDELIAAHRDLPSLMPYLHLPVQSGSDRILKAMNRRHTARDY 320 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 ++DRIR+ RPDIA+S DFIVGFPGET+ DF ATM+LV ++ YA AFSFKYSPR GTPG Sbjct: 321 LALLDRIRAARPDIALSGDFIVGFPGETEADFEATMELVRQVNYASAFSFKYSPRPGTPG 380 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 + M + V E VK ERL LQ L +QQ F + +G I+ LIEK G++ G+ VGRSPWL Sbjct: 381 AEMADHVPETVKDERLQRLQALLLKQQQDFGLSLIGSTIDTLIEKPGRQSGQKVGRSPWL 440 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 Q V+++ K IGDII+VRIT ++L+ EL Sbjct: 441 QPVIVDEKAGEIGDIIQVRITKTGYNSLFAELA 473 >gi|319405110|emb|CBI78714.1| bifunctional enzyme [Bartonella sp. AR 15-3] Length = 460 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 264/445 (59%), Positives = 343/445 (77%), Gaps = 2/445 (0%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ F+K+YGCQMNVYDS RM D +QGY + +DADLI++NTCHIREKAAEK+YS Sbjct: 15 PKKVFIKTYGCQMNVYDSQRMNDSLSTQGYIATQTPNDADLILINTCHIREKAAEKLYSD 74 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR++ ++ R + L++ V GCVAQAEG EILRR+P V+ ++GPQ Y+RLPELL++ Sbjct: 75 LGRLQIIRQGRTHDK-PLMIGVTGCVAQAEGNEILRRAPTVDFIIGPQMYHRLPELLKQV 133 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + GK+VV+TDY+VEDKF +L + ++RG++AFLT+QEGCDKFCTFCVVPYTRG EI Sbjct: 134 KQGKKVVETDYAVEDKFTQLPPHNKRAVQQRGISAFLTVQEGCDKFCTFCVVPYTRGAEI 193 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SRS+ Q+ DEAR+LI+ GV EITLLGQNVNAWRG+ +DG+ DLL+ L++I GL RL Sbjct: 194 SRSVKQITDEARQLIEAGVKEITLLGQNVNAWRGQSIDGKTWRLGDLLHHLAKIDGLKRL 253 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H + Y +ID+IR Sbjct: 254 RYTTSHPRDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLHLIDKIR 313 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + +PDIA S DFIVGFPGETD+DF T+ L+ ++GY+ A+SFKYSPR GT G+ M VD Sbjct: 314 AAKPDIAFSGDFIVGFPGETDEDFEETIKLIKQVGYSSAYSFKYSPRPGTVGATMKNHVD 373 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 E VK RL LQ L +QQ +F + +GQ +VLIEK G+ G++VGRSPWL VV+N++ Sbjct: 374 ETVKNTRLQHLQTILLDQQHTFLHSKIGQTTDVLIEKIGRYSGQMVGRSPWLLPVVINTQ 433 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 ++G I+K+RI D ++ GE + Sbjct: 434 T-SVGTIMKIRIKDASSNSFVGEKI 457 >gi|163867522|ref|YP_001608721.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bartonella tribocorum CIP 105476] gi|229890428|sp|A9IMW7|MIAB_BART1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|161017168|emb|CAK00726.1| bifunctional enzyme [Bartonella tribocorum CIP 105476] Length = 458 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 264/447 (59%), Positives = 341/447 (76%), Gaps = 2/447 (0%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + P++ F+K+YGCQMNVYDS RM D SQGY + +DADLI++NTCHIREKAAEK+Y Sbjct: 12 VAPKKVFIKTYGCQMNVYDSQRMTDSLSSQGYVTTQTPNDADLILVNTCHIREKAAEKLY 71 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGR+R ++ R + L V V GCVAQAEG EILRR+PIV++V+GPQ Y+RLPELLE Sbjct: 72 SDLGRLRVMRQERTPDK-PLTVGVTGCVAQAEGSEILRRAPIVDLVIGPQMYHRLPELLE 130 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +A+ GK++++TDY+VEDKF L + RKRGV+AFLT+QEGCDKFCTFCVVPYTRG Sbjct: 131 KAKQGKKIIETDYAVEDKFAHLPPHNKRAVRKRGVSAFLTVQEGCDKFCTFCVVPYTRGA 190 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 EISRS+ Q+ +EAR+LI+ GV EITLLGQNVN W G+ DG+ DLLY L+++ GL Sbjct: 191 EISRSVEQITEEARQLIEAGVKEITLLGQNVNGWHGQSADGKTWRLGDLLYHLAKLDGLK 250 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H + Y +I++ Sbjct: 251 RLRYTTSHPRDMDDSLIAAHRDLDMLMPYLHLPVQSGSDRILKAMNRQHKSSYYLHLIEK 310 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ RPDIA S DFIVGFPGETD+DF T+ L+ ++ Y+ A+SFKYSPR GT G+ M Sbjct: 311 IRAARPDIAFSGDFIVGFPGETDEDFEETIKLIQQVQYSSAYSFKYSPRPGTVGATMKNH 370 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 VDE+VK RL LQ L EQQ +F + +GQ +VLIEK G+ G++VGRSPWL VV++ Sbjct: 371 VDESVKDARLQHLQVLLLEQQNTFLRSKIGQKTDVLIEKPGRHSGQMVGRSPWLLPVVVD 430 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +++ + G ++++ I + ++ GE+ Sbjct: 431 TES-STGSVVEIHIKNASSNSFVGEMT 456 >gi|319403640|emb|CBI77225.1| bifunctional enzyme [Bartonella rochalimae ATCC BAA-1498] Length = 460 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 262/443 (59%), Positives = 339/443 (76%), Gaps = 2/443 (0%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ F+K+YGCQMNVYDS RM D +QGY + +DADLI++NTCHIREKAAEK+YS Sbjct: 15 PKKVFIKTYGCQMNVYDSQRMNDSLSAQGYIATQTPNDADLILINTCHIREKAAEKLYSD 74 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR++ ++ R + L++ V GCVAQAEG EILRR+P V+ ++GPQ Y+RLPELL++ Sbjct: 75 LGRLQIIRQGRTHDK-PLMIGVTGCVAQAEGNEILRRAPTVDFIIGPQMYHRLPELLKQV 133 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + GK+V++TDY+VEDKF L + R+RG++AFLT+QEGCDKFCTFCVVPYTRG EI Sbjct: 134 KQGKKVIETDYAVEDKFSHLPPHNKQAVRQRGISAFLTVQEGCDKFCTFCVVPYTRGAEI 193 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SRS+ Q+ EA +LI+ GV EITLLGQNVNAW G+ +DG+ DLL+ L++I GL RL Sbjct: 194 SRSVKQITAEAYQLIEAGVKEITLLGQNVNAWHGQSIDGKTWRLGDLLHHLAKIDGLKRL 253 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H + Y +ID+IR Sbjct: 254 RYTTSHPRDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLNLIDKIR 313 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + RPDIA S DFIVGFPGETD+DF T+ L+ ++GY+ A+SFKYSPR GT G+ M VD Sbjct: 314 AARPDIAFSGDFIVGFPGETDEDFEETIKLIQQVGYSSAYSFKYSPRPGTVGATMKNHVD 373 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 E VK RL LQ L +QQ +F + +GQ +VLIEK G+ G+++GRSPWL VV+N++ Sbjct: 374 ETVKNARLQHLQAILLDQQHTFLHSKIGQTTDVLIEKIGRHSGQMIGRSPWLLPVVVNTQ 433 Query: 444 NHNIGDIIKVRITDVKISTLYGE 466 +IG I+K+RIT+ ++ GE Sbjct: 434 A-SIGTIMKIRITNASSNSFIGE 455 >gi|319406556|emb|CBI80198.1| bifunctional enzyme [Bartonella sp. 1-1C] Length = 460 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 260/443 (58%), Positives = 338/443 (76%), Gaps = 2/443 (0%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ F+K+YGCQMNVYDS RM D +QGY + +DADLI++NTCHIREKAAEK+YS Sbjct: 15 PKKVFIKTYGCQMNVYDSQRMNDSLSAQGYIATQTPNDADLILINTCHIREKAAEKLYSD 74 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR++ ++ R + L++ V GCVAQAEG EILRR+P V+ ++GPQ Y+RLPELL++ Sbjct: 75 LGRLQIIRQGRTHDK-PLMIGVTGCVAQAEGNEILRRAPTVDFIIGPQMYHRLPELLKQV 133 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + GK+VV+TDY+VEDKF L + R+RG++AFLT+QEGCDKFCTFCVVPYTRG EI Sbjct: 134 KQGKKVVETDYAVEDKFSHLPPHNKQAVRQRGISAFLTVQEGCDKFCTFCVVPYTRGAEI 193 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SRS+ Q+ EA +LI+ GV EITLLGQNVNAW G+ +DG+ DLL+ L++I GL RL Sbjct: 194 SRSVKQITAEAHQLIEAGVKEITLLGQNVNAWHGQSIDGKTWRLGDLLHHLAKIDGLKRL 253 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTT+HPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H + Y +ID+IR Sbjct: 254 RYTTNHPRDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLNLIDKIR 313 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + +PDIA S DFIVGFPGETD+DF T+ L+ ++GY+ A+SFKYSPR GT G+ M VD Sbjct: 314 AAKPDIAFSGDFIVGFPGETDEDFEETIKLIKQVGYSSAYSFKYSPRPGTVGATMKNHVD 373 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 E VK RL LQ L +QQ +F + +GQ ++LIEK G+ G+++GRSPWL VV+N++ Sbjct: 374 ETVKNTRLQHLQAILLDQQHTFLHSKIGQTTDILIEKIGRHSGQMIGRSPWLLPVVINTQ 433 Query: 444 NHNIGDIIKVRITDVKISTLYGE 466 IG I+K+RIT+ ++ GE Sbjct: 434 A-PIGTIMKIRITNASSNSFIGE 455 >gi|240849891|ref|YP_002971280.1| RNA modification enzyme, MiaB family [Bartonella grahamii as4aup] gi|240267014|gb|ACS50602.1| RNA modification enzyme, MiaB family [Bartonella grahamii as4aup] Length = 458 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 264/447 (59%), Positives = 338/447 (75%), Gaps = 2/447 (0%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + P++ F+K+YGCQMNVYDS RM D SQGY +DADLI++NTCHIREKAAEK+Y Sbjct: 12 VAPKKVFIKTYGCQMNVYDSQRMTDSLSSQGYVTTQIPNDADLILVNTCHIREKAAEKLY 71 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGR+R ++ R + L+V V GCVAQAEG EILRR+P V++V+GPQ Y+RLPELLE Sbjct: 72 SDLGRLRVMRQERTPDK-PLMVGVTGCVAQAEGSEILRRAPTVDLVIGPQMYHRLPELLE 130 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +A+ GK++++TDY+VEDKF L + RKRGV+AFLT+QEGCDKFCTFCVVPYTRG Sbjct: 131 KAKQGKKIIETDYAVEDKFAHLPPHNKHAVRKRGVSAFLTVQEGCDKFCTFCVVPYTRGA 190 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 EISRS+ Q+ +EA +LI+ GV EITLLGQNVN W G+ DG+ DLLY L+++ GL Sbjct: 191 EISRSVEQITEEALQLIEAGVKEITLLGQNVNGWHGQSADGKTWRLGDLLYHLAKLDGLK 250 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H + Y +I++ Sbjct: 251 RLRYTTSHPRDMDDSLIAAHRDLDMLMPYLHLPVQSGSDRILKAMNRQHKSSHYLHLIEK 310 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ RPDIA S DFIVGFPGETD+DF T+ L+ ++ Y+ A+SFKYSPR GT G+ M Sbjct: 311 IRTARPDIAFSGDFIVGFPGETDEDFEETIKLIQQVQYSSAYSFKYSPRPGTVGATMKNH 370 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 VDE+VK RL LQ L EQQ +F + +GQ VLIEK G+ G++VGRSPWL VV++ Sbjct: 371 VDESVKDARLQHLQVLLLEQQNAFLRSKIGQKTNVLIEKPGRHSGQMVGRSPWLLPVVVD 430 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 ++ +IG +I++ I + ++ GE+ Sbjct: 431 TEA-SIGSVIEIHIKNASSNSFVGEVT 456 >gi|90420542|ref|ZP_01228449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aurantimonas manganoxydans SI85-9A1] gi|90335270|gb|EAS49023.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aurantimonas manganoxydans SI85-9A1] Length = 483 Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust. Identities = 267/439 (60%), Positives = 329/439 (74%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM D GY+ ++DADL++LNTCHIRE+AAEK+YS L Sbjct: 18 RKVFIKTYGCQMNVYDSQRMGDALARDGYQPTEVIEDADLVLLNTCHIRERAAEKIYSEL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GRI+ LK + ++G ++ V VAGCVAQAEG+EI+ R+P+V++V+GPQTY+RLPE L R Sbjct: 78 GRIKLLKAEKAEQGVEMRVAVAGCVAQAEGQEIIDRAPVVDLVIGPQTYHRLPEALARVA 137 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G +VV+TDY+VEDKF L V R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 138 RGDKVVETDYAVEDKFRHLPKVTAPQIRTRGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 197 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R L+Q++ EAR L GV E+TLLGQNVN W G+ G LL +L+EI G RLR Sbjct: 198 RPLTQIMGEARTLAAAGVREVTLLGQNVNGWSGQDEAGRDIGLGGLLRALAEIPGFARLR 257 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRHT +Y +++DRIR Sbjct: 258 YTTSHPRDMDDDLIAAHRDLPALMPYLHLPVQSGSDRILKAMNRRHTGADYLRLLDRIRQ 317 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIA+S DFIVGFPGETD DF TM+LV ++ YA AFSFKYS R GTPG+ M + VDE Sbjct: 318 ARPDIALSGDFIVGFPGETDADFEDTMELVSEVRYASAFSFKYSARPGTPGATMDDHVDE 377 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK+ERL LQ LRE QV F ++ VG+ I+VL+EK G+ + VGRSP+LQ VVL++ Sbjct: 378 AVKSERLQRLQTLLREHQVDFAESLVGRDIDVLVEKPGRYPHQRVGRSPFLQPVVLDAAA 437 Query: 445 HNIGDIIKVRITDVKISTL 463 IGDI+ VRI ++L Sbjct: 438 GEIGDIVTVRIESTLPNSL 456 >gi|114706886|ref|ZP_01439786.1| hypothetical protein FP2506_18759 [Fulvimarina pelagi HTCC2506] gi|114537834|gb|EAU40958.1| hypothetical protein FP2506_18759 [Fulvimarina pelagi HTCC2506] Length = 505 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 266/442 (60%), Positives = 328/442 (74%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVK+YGCQMNVYDS RM D +GYE + ++DADL++LNTCHIREKAAEK+YS L Sbjct: 42 RKVFVKTYGCQMNVYDSQRMGDALSGEGYEPTSIIEDADLVLLNTCHIREKAAEKIYSEL 101 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GRIR+LK R + G V VAGCVAQAEG EI+ R+P+V++V+GPQTY+RLP+ L RA Sbjct: 102 GRIRDLKAERAERGLKTQVAVAGCVAQAEGREIISRAPVVDLVIGPQTYHRLPQALTRAA 161 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++VV+TDY+VEDKFE L + R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 162 GGEKVVETDYAVEDKFEALPQSERRQIRGRGVTAFLTVQEGCDKFCTFCVVPYTRGAEVS 221 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +Q+VDEA+ L D GV E+TLLGQNVNAW G+ G+ LL+ L++I G+ RLR Sbjct: 222 RPFAQIVDEAKALSDAGVREVTLLGQNVNAWDGEDEAGKPIGLGGLLHRLADIPGIARLR 281 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM LI AH DL LMPYLHLPVQSGSD ILK+MNRRHTA +Y +++D IR Sbjct: 282 YTTSHPRDMDAELIAAHRDLLSLMPYLHLPVQSGSDSILKAMNRRHTAEDYLRVLDTIRE 341 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIA+S DFIVGFPGETD DF ATM LV ++ YA AF+FKYSPR GTPG+ M ++E Sbjct: 342 ARPDIALSGDFIVGFPGETDADFEATMRLVREVRYASAFTFKYSPRPGTPGAEMDGHIEE 401 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK RL L LRE Q F ++ VG+ + VLIEK G+ ++ GRSP+LQ VVL Sbjct: 402 AVKDTRLQALNALLREHQAEFAESLVGKSLSVLIEKPGRHPRQIAGRSPYLQPVVLPEGM 461 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 IGDI++ +IT ++L E Sbjct: 462 GAIGDIVEAKITSTGPNSLLAE 483 >gi|304393798|ref|ZP_07375723.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ahrensia sp. R2A130] gi|303293997|gb|EFL88372.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ahrensia sp. R2A130] Length = 477 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 268/441 (60%), Positives = 334/441 (75%), Gaps = 1/441 (0%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K++GCQMNVYDS RM D + GY +M+DADL++LNTCHIREKAAEKVYS L Sbjct: 15 KKVFIKTWGCQMNVYDSTRMSDALEADGYAPTTTMEDADLVLLNTCHIREKAAEKVYSNL 74 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GRIR LK +R L + V GCVAQAEG+EI+RR V++VVGPQTY+RLPE++ R++ Sbjct: 75 GRIRQLKETRAGTDRPLTIGVTGCVAQAEGQEIIRRERAVDLVVGPQTYHRLPEIVTRSK 134 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G +V DT+Y+VEDKFE L++ + RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 135 SGPQV-DTEYAVEDKFEHLALPKKRQVQARGVTAFLTVQEGCDKFCTFCVVPYTRGAEVS 193 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R L+Q++DEAR LID GV EITLLGQNVNAW G G + LL+ L+ + G+ RLR Sbjct: 194 RPLAQILDEARALIDAGVREITLLGQNVNAWHGVDGTGRELGLGHLLHHLAALPGIARLR 253 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y TSHPRDM+D LI+AH DLD LMPYLHLPVQ+GSD+ILKSMNR HT+ +Y II+R+R Sbjct: 254 YVTSHPRDMADDLIEAHRDLDCLMPYLHLPVQAGSDKILKSMNRGHTSADYLSIINRVRE 313 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIAIS D IVGFPGETDDDF ATM++V + YA +SFKYS R GTPG+ M +QVDE Sbjct: 314 ARPDIAISGDMIVGFPGETDDDFEATMEIVRQTNYAACYSFKYSMRPGTPGAEMTDQVDE 373 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L +QQ +FN AC+G+ I+VLIEK G+ + + +GRSPWLQSVV+ Sbjct: 374 AVKTERLARLQALLSDQQKAFNAACIGKTIDVLIEKPGRTEDQWIGRSPWLQSVVMPRTL 433 Query: 445 HNIGDIIKVRITDVKISTLYG 465 IGDI+ V + + ++L G Sbjct: 434 GAIGDIVSVDVIAAQANSLMG 454 >gi|118590489|ref|ZP_01547891.1| hypothetical protein SIAM614_02901 [Stappia aggregata IAM 12614] gi|118436952|gb|EAV43591.1| hypothetical protein SIAM614_02901 [Stappia aggregata IAM 12614] Length = 491 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 268/445 (60%), Positives = 333/445 (74%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FV++YGCQMNVYDS RM D+ +G+E + ++DADL++LNTCHIREKAAEKVYS L Sbjct: 31 RKVFVRTYGCQMNVYDSERMTDVLAPEGFEATDDLEDADLVILNTCHIREKAAEKVYSEL 90 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GRIR +K R K G D++V VAGCVAQAEGEEI RR+PIV++VVGPQ+Y++LP LLE+AR Sbjct: 91 GRIRKVKEERAKSGKDMMVGVAGCVAQAEGEEISRRAPIVDLVVGPQSYHQLPSLLEKAR 150 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G +VV+T++ ++ KF LS KR +AFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 151 AGSKVVETEFDIDAKFNHLSERAEKQVLKRPPSAFLTVQEGCDKFCTFCVVPYTRGAEVS 210 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS+ Q+V EA ++ GV EITLLGQNVNA+ G DG LL LSEI GL RLR Sbjct: 211 RSVEQIVSEAERMAAVGVREITLLGQNVNAYHGASPDGAVWGLGRLLRRLSEIDGLDRLR 270 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH DL LMPYLHLPVQSGSD+ILK+MNRRHT EY ++IDRIR Sbjct: 271 YTTSHPRDMDDDLIAAHRDLKSLMPYLHLPVQSGSDKILKAMNRRHTRDEYFRLIDRIRE 330 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PDIA+S DFIVGFPGE+D DF TMDL+ ++GY AFSFKYS R GTPG+ M +QV E Sbjct: 331 AAPDIALSGDFIVGFPGESDQDFEDTMDLIRQVGYGSAFSFKYSSRPGTPGATMDDQVPE 390 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +VK+ RL LQ + EQQ +FN + +G +VL+EK G+ G+LVG+SPWLQ V L++ Sbjct: 391 DVKSARLAELQALVAEQQKAFNASRLGMTCDVLLEKTGRNPGQLVGKSPWLQPVQLDAPE 450 Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469 IG I V I D+ ++L+G L+ Sbjct: 451 DLIGSIQAVEIVDIGSNSLFGRLIA 475 >gi|49475038|ref|YP_033079.1| hypothetical protein BH02260 [Bartonella henselae str. Houston-1] gi|81648272|sp|Q6G4V6|MIAB_BARHE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|49237843|emb|CAF27038.1| hypothetical protein BH02260 [Bartonella henselae str. Houston-1] Length = 458 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 261/447 (58%), Positives = 339/447 (75%), Gaps = 2/447 (0%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + P++ F+K+YGCQMNVYDS RM D S+GY + +DADLI++NTCHIREKAAEK+Y Sbjct: 12 LAPKKVFIKTYGCQMNVYDSQRMTDSLSSKGYVATQTPNDADLILVNTCHIREKAAEKLY 71 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGR+R ++ R + L+V V GCVAQAEG EILRR+PIV++V+GPQ Y+RLP+LLE Sbjct: 72 SDLGRLRVMRQERTPDK-PLMVGVTGCVAQAEGSEILRRAPIVDLVIGPQMYHRLPDLLE 130 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + + GK++V T+Y+VEDKF L + RKRGV+AFLT+QEGCDKFCTFCVVPYTRG Sbjct: 131 QTKQGKKIVATEYAVEDKFAHLPPHNKRAVRKRGVSAFLTVQEGCDKFCTFCVVPYTRGA 190 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 EISRS+ Q+ +EAR+LI+ GV EITLLGQNVN W G+ ++G+ DLLY L+++ GL Sbjct: 191 EISRSVEQITEEARQLIEAGVKEITLLGQNVNGWHGQNVNGKTWRLGDLLYHLAKLDGLK 250 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H + Y Q+I++ Sbjct: 251 RLRYTTSHPRDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLQLIEK 310 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ RPDIA S DFIVGFPGETD+DF T+ L+ ++ Y+ A+SFKYSPR GT G+ M Sbjct: 311 IRNARPDIAFSGDFIVGFPGETDEDFEETIKLIKQVEYSSAYSFKYSPRPGTVGATMKNH 370 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V+E VK RL LQ L EQQ +F + +GQ +VLIEK G+ G++VGRSPWL VV++ Sbjct: 371 VEEAVKDARLQHLQVLLLEQQNAFLRSKIGQTTDVLIEKAGRHSGQMVGRSPWLLPVVVD 430 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 ++ + G +I + I + ++ GE+ Sbjct: 431 TQA-STGTVIPIHIKNTSSNSFVGEMT 456 >gi|188582640|ref|YP_001926085.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Methylobacterium populi BJ001] gi|229890615|sp|B1ZJR5|MIAB_METPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|179346138|gb|ACB81550.1| RNA modification enzyme, MiaB family [Methylobacterium populi BJ001] Length = 446 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 260/444 (58%), Positives = 335/444 (75%), Gaps = 6/444 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +VKSYGCQMN YD+ RM D+ ++GY S+++AD++VLNTCHIREKAAEKVYS L Sbjct: 2 KKAYVKSYGCQMNAYDAGRMADVLAAEGYSATESVEEADVVVLNTCHIREKAAEKVYSEL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R LK R + G D +VVAGCVAQAEG EIL R+P V+VVVGPQ+Y+RLP+LL ++R Sbjct: 62 GRLRVLKGERAESGQDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQSR 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 RVVDT++ VEDKF+ L R RGVT FLT+QEGCDKFC FCVVPYTRG E+S Sbjct: 122 -ETRVVDTEFPVEDKFDHLPA-----RRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVS 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS++ VV+EAR+L++ GV EITL+GQNVNA+ G G DG T L+ +LS + GL+RLR Sbjct: 176 RSVAAVVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLR 235 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHP D +D LI AH ++MPYLHLPVQSGSDRIL +MNRRHT YR++I+RIR+ Sbjct: 236 YTTSHPNDFADDLIAAHAGNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRT 295 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIA+SSDFIVGFPGE+D DF TM LV +IG+A AFSFKYSPR GTP + + V E Sbjct: 296 ARPDIALSSDFIVGFPGESDADFAETMRLVAEIGFAAAFSFKYSPRAGTPAAEREDAVPE 355 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ+ L +Q+ +FN A VG + E+L+EK G+ G++ G++P LQ+V ++ Sbjct: 356 AVKTERLAALQQLLDQQRHAFNAAAVGTVAEILVEKTGRHPGQVAGKTPHLQAVQFDAPA 415 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG ++ VRIT ++L+GE++ Sbjct: 416 STIGTLVPVRITRAGSNSLFGEVL 439 >gi|254501345|ref|ZP_05113496.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Labrenzia alexandrii DFL-11] gi|222437416|gb|EEE44095.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Labrenzia alexandrii DFL-11] Length = 486 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 263/445 (59%), Positives = 334/445 (75%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FV++YGCQMNVYDS RM D+ QGY M++ADL++LNTCHIREKAAEKVYS L Sbjct: 26 RKVFVRTYGCQMNVYDSERMTDVLAPQGYSTTADMEEADLVILNTCHIREKAAEKVYSEL 85 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GRIR +K R K G D++V VAGCVAQAEGEEI RR+PIV++VVGPQ+Y++LP LL++AR Sbjct: 86 GRIRKVKEERAKAGKDMMVGVAGCVAQAEGEEISRRAPIVDMVVGPQSYHQLPSLLDKAR 145 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++VV+T++ ++ KF+ LS KR AFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 146 QGQKVVETEFDIDAKFDHLSARAEKPIMKRPPAAFLTVQEGCDKFCTFCVVPYTRGAEVS 205 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS+ Q+V EA+++ +GV E+TLLGQNVNA+ G+ DG LL LSEI GL RLR Sbjct: 206 RSVEQIVTEAQRMAASGVREVTLLGQNVNAYHGEAADGSTWGLGKLLRRLSEIDGLDRLR 265 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI+AH +L LMPYLHLPVQSGSD+ILK+MNR+HT EY ++IDRIR Sbjct: 266 YTTSHPRDMDDDLIEAHRELKSLMPYLHLPVQSGSDKILKAMNRKHTRDEYFRLIDRIRV 325 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PDIA+S DFI+GFPGETD DF TMDL+ ++ Y AFSFKYS R GTPG+ M +QV E Sbjct: 326 AAPDIALSGDFIIGFPGETDQDFEDTMDLIRRVEYGSAFSFKYSQRPGTPGATMEDQVPE 385 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +VK+ RL LQ L EQQ +FN + G +VL+EK G+ G+LVG+SPWLQ V L++ Sbjct: 386 DVKSVRLQELQALLSEQQKAFNASRKGMTCDVLLEKKGRNPGQLVGKSPWLQPVQLDAPE 445 Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469 IG + V I ++ ++L+G L+ Sbjct: 446 SMIGSVQAVEIVEIGSNSLFGRLIA 470 >gi|158421632|ref|YP_001522924.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Azorhizobium caulinodans ORS 571] gi|229890445|sp|A8IG00|MIAB_AZOC5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|158328521|dbj|BAF86006.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 464 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 261/445 (58%), Positives = 330/445 (74%), Gaps = 3/445 (0%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +VKS+GCQMNVYDS RM D +GY DADL++LNTCHIREKAAEKVYS Sbjct: 4 PRKLYVKSFGCQMNVYDSQRMADALAKEGYVETQDPADADLVILNTCHIREKAAEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R K G D + VAGCVAQAEG EI++R+P+V++VVGPQ+Y+RLPE+L R Sbjct: 64 LGRLRKAKQD---AGSDTTIAVAGCVAQAEGAEIMKRAPVVDLVVGPQSYHRLPEMLARV 120 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R GKRVVDT++ EDKF+ L +KRG TAF+T+QEGCDKFCTFCVVPYTRG E+ Sbjct: 121 RDGKRVVDTEFPAEDKFDHLPAPSAAATKKRGPTAFVTVQEGCDKFCTFCVVPYTRGAEV 180 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SRS+S++V EAR L+D GV EITL+GQNVNA+ G+G DG LL L+ I GL RL Sbjct: 181 SRSVSKIVGEARALVDQGVREITLIGQNVNAFHGEGPDGRTWGLGRLLEELAGINGLARL 240 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRIL +MNR+H Y +IID++R Sbjct: 241 RYTTSHPRDMDDGLIAAHRDLPQLMPYLHLPVQSGSDRILAAMNRKHGREIYFEIIDKLR 300 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + RPDIA+SSDFIVGFPGET+ DF T+DL ++G+A A+SFKYS R GTP + Q+ Sbjct: 301 AARPDIALSSDFIVGFPGETEADFEDTLDLARRVGFASAYSFKYSIRPGTPAAEHDHQLS 360 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 E VK+ERL L + L + +F+ AC+G+ ++L+EK G+ G+L+GRSP+LQSVV+ + Sbjct: 361 EEVKSERLARLHQVLEASKTAFDRACMGRRFDILLEKPGRLPGQLIGRSPYLQSVVVTAP 420 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 IGD + V ITDV ++L G++V Sbjct: 421 GAGIGDFVTVDITDVGPNSLAGQVV 445 >gi|49473881|ref|YP_031923.1| hypothetical protein BQ02140 [Bartonella quintana str. Toulouse] gi|81647252|sp|Q6G0N1|MIAB_BARQU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|49239384|emb|CAF25717.1| hypothetical protein BQ02140 [Bartonella quintana str. Toulouse] Length = 458 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 261/448 (58%), Positives = 339/448 (75%), Gaps = 2/448 (0%) Query: 21 CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +VP++ F+K+YGCQMNVYDS RM D S+GY + +DADLI+LNTCHIREKAAEK+ Sbjct: 11 SVVPKKVFIKTYGCQMNVYDSQRMTDSLSSKGYVATQTPNDADLILLNTCHIREKAAEKL 70 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 YS LGR+R ++ +R + L++ V GCVAQAEG EILRR+P+V++V+GPQ Y+RLP+LL Sbjct: 71 YSDLGRLRVMRQARTLDK-PLMIGVTGCVAQAEGNEILRRAPMVDLVIGPQMYHRLPDLL 129 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 E+ + GK++V+TDY VEDKF L + RKRGV+AFLT+QEGCDKFCTFCVVPYTRG Sbjct: 130 EQTKQGKKIVETDYPVEDKFAHLPPHNKRAVRKRGVSAFLTVQEGCDKFCTFCVVPYTRG 189 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 EISRS+ Q+ +EAR+LI+ GV EITLLGQNVN W G+ +G+ DLLY L+++ GL Sbjct: 190 AEISRSVEQITEEARQLIEAGVKEITLLGQNVNGWHGQIANGKTWRLGDLLYHLAKLDGL 249 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H + Y +I+ Sbjct: 250 KRLRYTTSHPRDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLHLIE 309 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +IR+ RPDIA S DFIVGFPGETD+DF T+ L+ ++ Y+ A+SFKYSPR GT G+ M Sbjct: 310 KIRTARPDIAFSGDFIVGFPGETDEDFEETVKLIKQVQYSSAYSFKYSPRPGTVGATMKN 369 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 VDE VK RL LQ L EQQ +F + +GQ +VLIEK G+ G++VGRSPWL VV+ Sbjct: 370 HVDEAVKDARLQHLQVLLLEQQNAFLRSKIGQTTDVLIEKVGRHSGQMVGRSPWLLPVVV 429 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +++ + G ++ + I + ++ GE+ Sbjct: 430 DTEA-STGTVMSIHIKNAGSNSFVGEIA 456 >gi|154245754|ref|YP_001416712.1| RNA modification protein [Xanthobacter autotrophicus Py2] gi|154159839|gb|ABS67055.1| RNA modification enzyme, MiaB family [Xanthobacter autotrophicus Py2] Length = 496 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 252/442 (57%), Positives = 333/442 (75%), Gaps = 3/442 (0%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +VKS+GCQMNVYDS RM D +G+ +ADL++LNTCHIREKAAEKVYS Sbjct: 30 PRKLYVKSFGCQMNVYDSHRMADTLAREGFVETQDPAEADLVILNTCHIREKAAEKVYSE 89 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R K + G D ++ VAGCVAQAEG EI+RR+P+V++VVGPQ+Y+RLPELL A Sbjct: 90 LGRLRKQKQ---EAGSDTMIAVAGCVAQAEGAEIMRRAPVVDLVVGPQSYHRLPELLAEA 146 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + GKRVVDT++ EDKF+ L R RG AF+T+QEGCDKFCTFCVVPYTRG E+ Sbjct: 147 KAGKRVVDTEFPAEDKFDHLPAPTRAATRSRGPAAFVTVQEGCDKFCTFCVVPYTRGAEV 206 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++++DEA +L+D GV EI+L+GQNVNA+ G G DG + + L+ ++ + GL RL Sbjct: 207 SRPVAKIMDEAARLVDQGVREISLIGQNVNAFHGAGPDGTTWSLARLMEHMARLDGLARL 266 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRIL +MNR+H ++ II+++R Sbjct: 267 RYTTSHPRDMDDDLIAAHRDLPQLMPYLHLPVQSGSDRILAAMNRKHGRDDFFAIIEKMR 326 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 RPD+A+SSDFIVGFPGE++ DF T+DLV ++G+A A+SFKYSPR GTP ++ QV Sbjct: 327 QARPDMALSSDFIVGFPGESEKDFEDTLDLVRRVGFASAYSFKYSPRPGTPAADHDAQVP 386 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 E VKAERL LQ+ L + +F+++C G+ ++L+EK G++ G+L+GRSP+LQSVV+N Sbjct: 387 EEVKAERLAELQRLLEASKAAFDESCRGRTFDILLEKPGRQAGQLIGRSPYLQSVVVNDP 446 Query: 444 NHNIGDIIKVRITDVKISTLYG 465 IGD++ V ITDV ++L G Sbjct: 447 PAAIGDLLTVTITDVGPNSLAG 468 >gi|229891225|sp|A7IGB2|MIAB_XANP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 470 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 252/442 (57%), Positives = 333/442 (75%), Gaps = 3/442 (0%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +VKS+GCQMNVYDS RM D +G+ +ADL++LNTCHIREKAAEKVYS Sbjct: 4 PRKLYVKSFGCQMNVYDSHRMADTLAREGFVETQDPAEADLVILNTCHIREKAAEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R K + G D ++ VAGCVAQAEG EI+RR+P+V++VVGPQ+Y+RLPELL A Sbjct: 64 LGRLRKQKQ---EAGSDTMIAVAGCVAQAEGAEIMRRAPVVDLVVGPQSYHRLPELLAEA 120 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + GKRVVDT++ EDKF+ L R RG AF+T+QEGCDKFCTFCVVPYTRG E+ Sbjct: 121 KAGKRVVDTEFPAEDKFDHLPAPTRAATRSRGPAAFVTVQEGCDKFCTFCVVPYTRGAEV 180 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++++DEA +L+D GV EI+L+GQNVNA+ G G DG + + L+ ++ + GL RL Sbjct: 181 SRPVAKIMDEAARLVDQGVREISLIGQNVNAFHGAGPDGTTWSLARLMEHMARLDGLARL 240 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRIL +MNR+H ++ II+++R Sbjct: 241 RYTTSHPRDMDDDLIAAHRDLPQLMPYLHLPVQSGSDRILAAMNRKHGRDDFFAIIEKMR 300 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 RPD+A+SSDFIVGFPGE++ DF T+DLV ++G+A A+SFKYSPR GTP ++ QV Sbjct: 301 QARPDMALSSDFIVGFPGESEKDFEDTLDLVRRVGFASAYSFKYSPRPGTPAADHDAQVP 360 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 E VKAERL LQ+ L + +F+++C G+ ++L+EK G++ G+L+GRSP+LQSVV+N Sbjct: 361 EEVKAERLAELQRLLEASKAAFDESCRGRTFDILLEKPGRQAGQLIGRSPYLQSVVVNDP 420 Query: 444 NHNIGDIIKVRITDVKISTLYG 465 IGD++ V ITDV ++L G Sbjct: 421 PAAIGDLLTVTITDVGPNSLAG 442 >gi|218510260|ref|ZP_03508138.1| putative 2-methylthioadenine synthetase (miaB-like) protein [Rhizobium etli Brasil 5] Length = 450 Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust. Identities = 261/399 (65%), Positives = 319/399 (79%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM D GYE M++ADL++LNTCHIREKAAEKVYS L Sbjct: 35 RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 94 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K + +G ++++ V GCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+ Sbjct: 95 GRLREMKKKKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAQ 154 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+RVVDT+Y++EDKFE L I + R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 155 QGQRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 214 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +SQ+V+EA KL++ GV EITLLGQNVNAW G G GE + DLLY L+EI GL RLR Sbjct: 215 RPVSQIVEEAEKLVEAGVREITLLGQNVNAWHGAGPRGEAWSLGDLLYRLAEIPGLARLR 274 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI+AH DL LMPYLHLPVQSGSDRILK+MNRRHTA EY +I+RIR+ Sbjct: 275 YTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYFSLIERIRT 334 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPDIA+S DFI GFPGETD DF T+ LV+++ YAQAFSFKYS R GTPG+ + +QV E Sbjct: 335 VRPDIALSGDFITGFPGETDADFEDTLRLVEEVRYAQAFSFKYSTRPGTPGAELKDQVPE 394 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 +KAERL LQ L +QQ F ++C+G+ I++L+EK G+ Sbjct: 395 EIKAERLERLQALLLKQQQEFAESCIGKEIDLLLEKPGR 433 >gi|163852619|ref|YP_001640662.1| RNA modification protein [Methylobacterium extorquens PA1] gi|229890613|sp|A9VYZ9|MIAB_METEP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|163664224|gb|ABY31591.1| RNA modification enzyme, MiaB family [Methylobacterium extorquens PA1] Length = 446 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 258/444 (58%), Positives = 331/444 (74%), Gaps = 6/444 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +VKSYGCQMN YD+ RM D+ ++GY +++++AD++VLNTCHIREKAAEKVYS L Sbjct: 2 KKAYVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSEL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R LK R + G D +VVAGCVAQAEG EIL R+P V+VVVGPQ+Y+RLP+LL ++R Sbjct: 62 GRLRVLKGERAESGHDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQSR 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 RVVDT++ EDKF+ L R RGVT FLT+QEGCDKFC FCVVPYTRG E+S Sbjct: 122 -ETRVVDTEFPAEDKFDHLPA-----RRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVS 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS++ VVDEAR+L++ GV EITL+GQNVNA+ G G DG T L+ +LS + GL+RLR Sbjct: 176 RSVAAVVDEARRLVEGGVREITLIGQNVNAYHGNGPDGAPATLGHLMDALSAVPGLLRLR 235 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHP D +D LI AH ++MPYLHLPVQSGSDRIL +MNRRHT YR++I+RIR+ Sbjct: 236 YTTSHPNDFADDLIAAHATNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRN 295 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIA+SSDFIVGFPGETD DF TM LV IG++ AFSFKYSPR GTP + + V E Sbjct: 296 ARPDIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPE 355 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L Q+ ++N A VG + E+L+EK G+ G++ G++P LQ+V ++ Sbjct: 356 AVKTERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPA 415 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG ++ VRIT ++L+GE + Sbjct: 416 STIGTVVPVRITRAGSNSLFGETL 439 >gi|319898348|ref|YP_004158441.1| bifunctional enzyme [Bartonella clarridgeiae 73] gi|319402312|emb|CBI75851.1| bifunctional enzyme [Bartonella clarridgeiae 73] Length = 460 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 259/443 (58%), Positives = 335/443 (75%), Gaps = 2/443 (0%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ F+K+YGCQMNVYDS RM D +QGY + +DADLI++NTCHIREKAAEK+YS Sbjct: 15 PKKVFIKTYGCQMNVYDSQRMNDSLSAQGYITTQTPNDADLILINTCHIREKAAEKLYSD 74 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR++ ++ R + L++ V GCVAQAEG EILRR+P V+ ++GPQ Y+RLPELL++ Sbjct: 75 LGRLQIIRQERTNDK-PLMIGVTGCVAQAEGNEILRRAPTVDFIIGPQMYHRLPELLKQV 133 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK+VV+T+Y+VEDKF L + ++RG++AFLT+QEGCDKFCTFCVVPYTRG EI Sbjct: 134 TQGKKVVETNYAVEDKFTHLPPHNKRAVQQRGISAFLTVQEGCDKFCTFCVVPYTRGAEI 193 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SRS+ Q+ +EA +LI+ GV EITLLGQNVNAW G+ +DG+ DLL+ L++I GL RL Sbjct: 194 SRSVEQITNEAHQLIEAGVKEITLLGQNVNAWHGQSIDGKTWRLGDLLHHLAKIDGLKRL 253 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP DM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H + Y +ID+IR Sbjct: 254 RYTTSHPCDMDDSLIAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSIHYLHLIDKIR 313 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + RPDIA S DFIVGFPGETD+DF T+ L+ ++GY+ A+SFKYS R GT G+ M VD Sbjct: 314 AARPDIAFSGDFIVGFPGETDEDFEETIKLIKQVGYSSAYSFKYSSRPGTVGATMKNHVD 373 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 E VK RL LQ L +QQ F + +GQ +VLIEK G+ G++VGRSPWL VV+N++ Sbjct: 374 ETVKNARLQHLQTVLLDQQHIFLHSKIGQTTDVLIEKIGRHSGQMVGRSPWLLPVVVNTQ 433 Query: 444 NHNIGDIIKVRITDVKISTLYGE 466 ++G IIK+RI + ++ GE Sbjct: 434 A-SVGTIIKIRIKNASSNSFVGE 455 >gi|154254048|ref|YP_001414872.1| RNA modification protein [Parvibaculum lavamentivorans DS-1] gi|229890586|sp|A7HZ82|MIAB_PARL1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|154157998|gb|ABS65215.1| RNA modification enzyme, MiaB family [Parvibaculum lavamentivorans DS-1] Length = 467 Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust. Identities = 261/445 (58%), Positives = 335/445 (75%), Gaps = 2/445 (0%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVK+YGCQMNVYDS RM D+ GY V++ +DAD+++LNTCHIREKAAEKVYS L Sbjct: 15 KKIFVKTYGCQMNVYDSARMVDVMAPSGYTEVDAPEDADIVILNTCHIREKAAEKVYSEL 74 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143 GR+R LK + G +LL+ VAGCVAQAEGEE+ RR+P+V++V+GPQTY+RLPE + R A Sbjct: 75 GRLRELKKEKSGRGEELLIGVAGCVAQAEGEEMRRRAPVVDLVLGPQTYHRLPEYVARLA 134 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G +V+T++ V+DKF L + + RG TAFLTIQEGCDKFCTFCVVPYTRG E Sbjct: 135 NGGPGIVETEFPVDDKFASLPMAEKRKTLARGATAFLTIQEGCDKFCTFCVVPYTRGSEF 194 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++++DEAR L+D GV EITLLGQNVNAW G+ G T L+ +L+EI+GL RL Sbjct: 195 SRPVARILDEARSLVDAGVREITLLGQNVNAWHGEDQAGRPATLGYLIRALAEIEGLARL 254 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPRDM + LI AH D+ LMPYLHLPVQSGSDRIL +MNRRH A Y +II RIR Sbjct: 255 RYTTSHPRDMDEELIAAHRDVPALMPYLHLPVQSGSDRILAAMNRRHDADSYHRIIGRIR 314 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + +PDIA+SSDFIVGFPGET+ DF AT+DL+ +G+AQA+SFKYSPR GTP + +QV Sbjct: 315 AAKPDIALSSDFIVGFPGETEADFEATLDLIRTVGFAQAYSFKYSPRPGTPAATEEDQVP 374 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV-VLNS 442 E VK+ERL LQ L EQQ++FN C G+ + VL ++ G+ + +LVGRSP+LQSV + ++ Sbjct: 375 EEVKSERLQRLQALLGEQQLAFNAGCAGRTMPVLFDRRGRGESQLVGRSPYLQSVHIDDA 434 Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467 H G ++ V I + ++L G L Sbjct: 435 PEHLFGSLVDVVIEEGHRNSLRGRL 459 >gi|121601992|ref|YP_989492.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bartonella bacilliformis KC583] gi|229890427|sp|A1UU39|MIAB_BARBK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|120614169|gb|ABM44770.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bartonella bacilliformis KC583] Length = 458 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 265/445 (59%), Positives = 342/445 (76%), Gaps = 2/445 (0%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 I ++ F+K+YGCQMNVYDS RM D +QGY + +DADLI++NTCHIREKAAEK+Y Sbjct: 12 IASKKVFIKTYGCQMNVYDSQRMNDSLSAQGYVTTQTPNDADLILVNTCHIREKAAEKLY 71 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGR+R ++ R E L++ V GCVAQAEG+EILRRSP V++VVGPQ Y+RLPELL+ Sbjct: 72 SDLGRLRMMRQKRTSEK-PLMIGVTGCVAQAEGDEILRRSPTVDLVVGPQMYHRLPELLQ 130 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +A+ GK++V+T+Y+VEDKF L + +KRGV+AFLT+QEGCDKFCTFCVVPYTRG Sbjct: 131 QAQQGKKIVETNYAVEDKFNHLPPHNKRAVQKRGVSAFLTVQEGCDKFCTFCVVPYTRGA 190 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 EISRS+ Q+ DEAR+LI+ V EITLLGQNVN W G+ DG+ DLLY L+++ GL Sbjct: 191 EISRSVEQITDEARQLIEADVKEITLLGQNVNGWHGQSTDGKTWRLGDLLYHLAKLDGLK 250 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLRYTTSHPRDM + LI AH +LD+LMPYLHLPVQSGSDRILK+MNR+H A +Y +I++ Sbjct: 251 RLRYTTSHPRDMDESLIAAHRNLDILMPYLHLPVQSGSDRILKAMNRQHKAIDYLNLIEK 310 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ RPDIA S DFIVGFPGETDDDF T+ L++++GY+ A+SFKYSPR GT G+ M Q Sbjct: 311 IRTARPDIAFSGDFIVGFPGETDDDFEETIKLIEQVGYSSAYSFKYSPRPGTLGATMKNQ 370 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 VDE VK +RL LQ L +QQ F + +GQ +VLIEK G+ G++VGRSPWL VV++ Sbjct: 371 VDEKVKNDRLQRLQALLLDQQHRFLRSKIGQTTDVLIEKDGRHPGQIVGRSPWLLPVVVD 430 Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466 ++ IG ++ ++IT+ ++ GE Sbjct: 431 TQA-PIGTVMAIQITNASSNSFVGE 454 >gi|240139952|ref|YP_002964429.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37 tRNA methylthiolase [Methylobacterium extorquens AM1] gi|240009926|gb|ACS41152.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37 tRNA methylthiolase [Methylobacterium extorquens AM1] Length = 446 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 257/444 (57%), Positives = 330/444 (74%), Gaps = 6/444 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +VKSYGCQMN YD+ RM D+ ++GY +++++AD++VLNTCHIREKAAEKVYS L Sbjct: 2 KKAYVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSEL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R LK R + G D +VVAGCVAQAEG EIL R+P V+VVVGPQ+Y+RLP+LL ++R Sbjct: 62 GRLRVLKGERAESGHDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQSR 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 RVVDT++ EDKF+ L R RGVT FLT+QEGCDKFC FCVVPYTRG E+S Sbjct: 122 -ETRVVDTEFPAEDKFDHLPA-----RRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVS 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS++ VVDEAR+L++ GV EITL+GQNVNA+ G G DG T L+ +LS + GL+RLR Sbjct: 176 RSVAAVVDEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLR 235 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHP D +D LI AH ++MPYLHLPVQSGSD IL +MNRRHT YR++I+RIR+ Sbjct: 236 YTTSHPNDFADDLIAAHATNPLVMPYLHLPVQSGSDGILHAMNRRHTGDAYRRLIERIRN 295 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIA+SSDFIVGFPGETD DF TM LV IG++ AFSFKYSPR GTP + + V E Sbjct: 296 ARPDIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPE 355 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L Q+ ++N A VG + E+L+EK G+ G++ G++P LQ+V ++ Sbjct: 356 AVKTERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPA 415 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG ++ VRIT ++L+GE + Sbjct: 416 STIGTVVPVRITRAGSNSLFGETL 439 >gi|254562377|ref|YP_003069472.1| tRNA modification enzyme MiaB [Methylobacterium extorquens DM4] gi|254269655|emb|CAX25627.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37 tRNA methylthiolase [Methylobacterium extorquens DM4] Length = 446 Score = 542 bits (1396), Expect = e-152, Method: Compositional matrix adjust. Identities = 256/440 (58%), Positives = 329/440 (74%), Gaps = 6/440 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +VKSYGCQMN YD+ RM D+ ++GY +++++AD++VLNTCHIREKAAEKVYS L Sbjct: 2 KKAYVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSEL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R LK R + G D +VVAGCVAQAEG EIL R+P V+VVVGPQ+Y+RLP+LL ++R Sbjct: 62 GRLRVLKGERAESGQDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQSR 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 RVVDT++ EDKF+ L R RGVT FLT+QEGCDKFC FCVVPYTRG E+S Sbjct: 122 -ETRVVDTEFPAEDKFDHLPA-----RRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVS 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS++ VVDEAR+L++ GV EITL+GQNVNA+ G G DG T L+ +LS + GL+RLR Sbjct: 176 RSVAAVVDEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLR 235 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHP D +D LI AH ++MPYLHLPVQSGSDRIL++MNRRHT YR++I+RIR+ Sbjct: 236 YTTSHPNDFADDLIAAHATNPLVMPYLHLPVQSGSDRILQAMNRRHTGDAYRRLIERIRN 295 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIA+SSDFIVGFPGETD DF TM LV IG++ AFSFKYSPR GTP + + V E Sbjct: 296 ARPDIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPE 355 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L Q+ ++N A VG + E+L+EK G+ G++ G++P LQ+V ++ Sbjct: 356 AVKTERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPA 415 Query: 445 HNIGDIIKVRITDVKISTLY 464 IG ++ VRIT ++L+ Sbjct: 416 STIGTVVPVRITRAGSNSLF 435 >gi|85714185|ref|ZP_01045174.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrobacter sp. Nb-311A] gi|85699311|gb|EAQ37179.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrobacter sp. Nb-311A] Length = 478 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 249/456 (54%), Positives = 335/456 (73%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 M+ ++ + + P++ +KSYGCQMNVYD+ RM D +GY S +DADL++LNTCHI Sbjct: 1 MLIEMPESRMPPRKLHIKSYGCQMNVYDAQRMADALAPEGYVETASAEDADLVILNTCHI 60 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 REKA+EKVYS LGR+R K+ ++G + VVVAGCVAQAEGEEI+RR+P+V+VVVGPQ+ Sbjct: 61 REKASEKVYSELGRLRAAKDQAARDGRGMSVVVAGCVAQAEGEEIIRRAPVVDVVVGPQS 120 Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 Y+ LPELL RA+ R ++T++ V DKF L R RG++AF+T+QEGCDKFCTF Sbjct: 121 YHHLPELLARAKAAGRALETEFPVADKFGFLPQPSRQAIRARGISAFVTVQEGCDKFCTF 180 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 CVVPYTRG E+SR ++++ ++ ++L DNGV EITL+GQNVNA+ G+G DG F LLY Sbjct: 181 CVVPYTRGAEVSRPVAKIAEDVQRLADNGVREITLIGQNVNAYHGEGPDGRPWPFGKLLY 240 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L+EI G+VRLRY+TSHPRD+ D LI AH LD LMP++HLPVQSGSDRIL +MNRRH+A Sbjct: 241 RLAEIPGIVRLRYSTSHPRDVEDSLIDAHRHLDALMPFVHLPVQSGSDRILAAMNRRHSA 300 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 +YR++IDR R R DIA SSDFIVGFPGET++DF AT+ LV +IGYA A+SFKYSPR G Sbjct: 301 SDYRRVIDRFRHARQDIAFSSDFIVGFPGETEEDFAATLALVGQIGYAAAYSFKYSPRPG 360 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 TP + + E V RL LQK + QQ +FN +G+ I+VL E+ G++ G++ GR+ Sbjct: 361 TPAAELREAVSTADMDARLERLQKLIDSQQSAFNRTALGRTIDVLFERAGRKPGQIAGRT 420 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 P+LQ + + + IG ++ V + ++ +L+G L Sbjct: 421 PYLQPAHVEASDAIIGQVLPVTVASLERYSLFGTLA 456 >gi|75674213|ref|YP_316634.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrobacter winogradskyi Nb-255] gi|123745611|sp|Q3SMT7|MIAB_NITWN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|74419083|gb|ABA03282.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrobacter winogradskyi Nb-255] Length = 477 Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust. Identities = 250/447 (55%), Positives = 333/447 (74%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + P++ +KSYGCQMNVYD+ RM D +GY S +DADL++LNTCHIREKA+EKVY Sbjct: 6 MPPRKLHIKSYGCQMNVYDAQRMADTLAVEGYVETTSAEDADLVILNTCHIREKASEKVY 65 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGR+R K+ ++G + +VVAGCVAQAEGEEI+RR+P+V+VVVGPQ+Y+ LP+LL Sbjct: 66 SELGRLRAAKDQAARDGRGMNIVVAGCVAQAEGEEIIRRAPMVDVVVGPQSYHHLPQLLA 125 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 RA+ R ++T++ V DKF L R RG++AF+T+QEGCDKFCTFCVVPYTRG Sbjct: 126 RAKTCGRALETEFPVADKFGFLPQPSRQAIRSRGISAFVTVQEGCDKFCTFCVVPYTRGA 185 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++VV++ R+L DNGV EITL+GQNVNA+ G+G DG F LLY L+ I G+V Sbjct: 186 EASRPVAKVVEDVRRLADNGVREITLIGQNVNAYHGEGPDGRPWPFGKLLYRLAGIPGIV 245 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLRY+TSHPRD+ D LI AH DLD LMP++HLPVQSGSDRIL +MNRRHTA +YR++IDR Sbjct: 246 RLRYSTSHPRDVEDTLIDAHRDLDALMPFVHLPVQSGSDRILAAMNRRHTADDYRRVIDR 305 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R RPDIA SSDFIVGFPGET++DF AT+ LV +IGYA A+SFKYSPR GTP ++M E Sbjct: 306 FRQARPDIAFSSDFIVGFPGETEEDFAATLALVGQIGYAAAYSFKYSPRPGTPAADMQET 365 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V +RL+ LQ + QQ +FN +G+ I+VL ++ G++ G++VGR+ +LQ + Sbjct: 366 VSTADMDQRLVQLQNLIDSQQSAFNRTALGRTIDVLFDRAGRKPGQIVGRTAYLQPAHVE 425 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG ++ V + ++ +L+G L Sbjct: 426 ASDAIIGQVLPVTVASLERYSLFGTLA 452 >gi|170747073|ref|YP_001753333.1| RNA modification protein [Methylobacterium radiotolerans JCM 2831] gi|229890617|sp|B1LWE8|MIAB_METRJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|170653595|gb|ACB22650.1| RNA modification enzyme, MiaB family [Methylobacterium radiotolerans JCM 2831] Length = 445 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 253/444 (56%), Positives = 330/444 (74%), Gaps = 6/444 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVKSYGCQMN YD+ RM D+ ++GY ++++DAD++VLNTCHIREKAAEKVYS L Sbjct: 2 KKAFVKSYGCQMNAYDAARMADVLGAEGYTATDTVEDADVVVLNTCHIREKAAEKVYSEL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R LK R +G D +VVAGCVAQAEG EI R P V+VVVGPQ+Y+RLP+LL R+R Sbjct: 62 GRLRVLKGERKAQGLDTRIVVAGCVAQAEGAEIQARQPAVDVVVGPQSYHRLPDLLARSR 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +RVVDT++ VEDKF+ L R G +AFLT+QEGCDKFC FCVVPYTRG E+S Sbjct: 122 -ERRVVDTEFPVEDKFDHLP-----RRRTLGASAFLTVQEGCDKFCAFCVVPYTRGAEVS 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS++ V+ EA KL D GV EITL+GQNVNA+ G G DG +DL+ ++++I G+ R+R Sbjct: 176 RSVAAVLAEAEKLADGGVREITLIGQNVNAYHGDGPDGAPAGLADLVRAVAKIPGIARIR 235 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHP D D LI+AH ++ LMPYLHLPVQSGSDRIL +MNR+HT YR++IDRIR+ Sbjct: 236 YTTSHPNDFDDALIRAHAEVPALMPYLHLPVQSGSDRILAAMNRKHTGDAYRRLIDRIRA 295 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIA+SSDFIVGFPGETD DF T+ LV +G+ AFSFKYS R GTP ++ +QV E Sbjct: 296 ARPDIALSSDFIVGFPGETDADFAETLRLVRDVGFESAFSFKYSTRPGTPAADRTDQVPE 355 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 V A RL LQ L Q+ ++ A G++ +VL+EK G+ G++ G++P L +V ++ Sbjct: 356 AVMAARLAELQALLDSQRHAYQRAAAGRVFDVLVEKRGRHPGQVAGKTPHLLAVQFDAAP 415 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 H+IG ++ VRIT+ ++L+GELV Sbjct: 416 HHIGQVVPVRITEAGSNSLFGELV 439 >gi|229890681|sp|B7KVE0|MIAB_METC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 446 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 253/440 (57%), Positives = 328/440 (74%), Gaps = 6/440 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +VKSYGCQMN YD+ RM D+ ++GY +++++AD++VLNTCHIREKAAEKVYS L Sbjct: 2 KKAYVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSEL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R LK R + G + +VVAGCVAQAEG EIL R+P V+VVVGPQ+Y+RLP+LL ++R Sbjct: 62 GRLRVLKGDRAESGQETRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQSR 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 RVVDT++ EDKF+ L R RGVT FLT+QEGCDKFC FCVVPYTRG E+S Sbjct: 122 -ETRVVDTEFPAEDKFDHLPA-----RRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVS 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS++ VV+EAR+L++ GV EITL+GQNVNA+ G G DG T L+ +LS + GL+RLR Sbjct: 176 RSVAAVVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGQLMDALSAVPGLLRLR 235 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHP D +D LI AH ++MPYLHLPVQSGSDRIL +MNRRHT YR++I+RIR+ Sbjct: 236 YTTSHPNDFADDLIAAHATNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRN 295 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIA+SSDFIVGFPGETD DF T+ LV IG++ AFSFKYSPR GTP + + V E Sbjct: 296 ARPDIALSSDFIVGFPGETDADFAETLRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPE 355 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L Q+ ++N A VG + E+L+EK G+ G++ G++P LQ+V ++ Sbjct: 356 AVKTERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPA 415 Query: 445 HNIGDIIKVRITDVKISTLY 464 IG ++ VRIT ++L+ Sbjct: 416 STIGTVVPVRITRAGSNSLF 435 >gi|218531460|ref|YP_002422276.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Methylobacterium chloromethanicum CM4] gi|218523763|gb|ACK84348.1| RNA modification enzyme, MiaB family [Methylobacterium chloromethanicum CM4] Length = 462 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 256/457 (56%), Positives = 333/457 (72%), Gaps = 11/457 (2%) Query: 13 MVSQIVDQCIVP-----QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67 M + C +P ++ +VKSYGCQMN YD+ RM D+ ++GY +++++AD++VL Sbjct: 1 MSGGLSASCRLPRDTILKKAYVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVL 60 Query: 68 NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127 NTCHIREKAAEKVYS LGR+R LK R + G + +VVAGCVAQAEG EIL R+P V+VV Sbjct: 61 NTCHIREKAAEKVYSELGRLRVLKGDRAESGQETRIVVAGCVAQAEGREILSRAPAVDVV 120 Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187 VGPQ+Y+RLP+LL ++R RVVDT++ EDKF+ L R RGVT FLT+QEGCD Sbjct: 121 VGPQSYHRLPDLLRQSR-ETRVVDTEFPAEDKFDHLPA-----RRNRGVTGFLTVQEGCD 174 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247 KFC FCVVPYTRG E+SRS++ VV+EAR+L++ GV EITL+GQNVNA+ G G DG T Sbjct: 175 KFCAFCVVPYTRGAEVSRSVAAVVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATL 234 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 L+ +LS + GL+RLRYTTSHP D +D LI AH ++MPYLHLPVQSGSDRIL +MN Sbjct: 235 GQLMDALSAVPGLLRLRYTTSHPNDFADDLIAAHATNPLVMPYLHLPVQSGSDRILHAMN 294 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 RRHT YR++I+RIR+ RPDIA+SSDFIVGFPGETD DF T+ LV IG++ AFSFKY Sbjct: 295 RRHTGDAYRRLIERIRNARPDIALSSDFIVGFPGETDADFAETLRLVSDIGFSAAFSFKY 354 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 SPR GTP + + V E VK ERL LQ L Q+ ++N A VG + E+L+EK G+ G+ Sbjct: 355 SPRAGTPAAEREDAVPEAVKTERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQ 414 Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464 + G++P LQ+V ++ IG ++ VRIT ++L+ Sbjct: 415 VAGKTPHLQAVQFDAPASTIGTVVPVRITRAGSNSLF 451 >gi|328545928|ref|YP_004306037.1| 2-methylthioadenine synthetase (MiaB-like) protein [polymorphum gilvum SL003B-26A1] gi|326415668|gb|ADZ72731.1| 2-methylthioadenine synthetase (MiaB-like) protein [Polymorphum gilvum SL003B-26A1] Length = 485 Score = 535 bits (1379), Expect = e-150, Method: Compositional matrix adjust. Identities = 254/444 (57%), Positives = 328/444 (73%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FV++YGCQMNVYDS RM ++ QGY + +++DADL++LNTCHIREKAAEKVYS L Sbjct: 23 RKVFVRTYGCQMNVYDSGRMAEVLAPQGYSQTETLEDADLVILNTCHIREKAAEKVYSEL 82 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K+ R + G L+ VAGCVAQAEGEEI RR+P+V++V GPQ+Y+RLP+LL RA Sbjct: 83 GRLRKIKDERARAGKPTLIGVAGCVAQAEGEEISRRAPVVDLVFGPQSYHRLPDLLVRAA 142 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G +VV+T++ +++KFE L+ R +AFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 143 GGAKVVETEFDIDEKFEHLAEQSKRMPLARAASAFLTVQEGCDKFCTFCVVPYTRGAEVS 202 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R L Q++ EA L GV EITLLGQNVNAW G+G DG LL L+E+ GL RLR Sbjct: 203 RPLGQILQEAEGLAAAGVREITLLGQNVNAWHGEGPDGRPWGLGRLLRRLAEVDGLDRLR 262 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH D+ LMPYLHLPVQSGSDRIL +MNR+H +Y +++DRIR Sbjct: 263 YTTSHPRDMDDELIAAHRDMPELMPYLHLPVQSGSDRILAAMNRKHGRDDYFRLVDRIRE 322 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P +A+S DFIVGFPGETD DF TMDLV ++GYA FSFKYS R GTPG+ M +Q+ E Sbjct: 323 ASPGLALSGDFIVGFPGETDADFADTMDLVRRVGYASCFSFKYSQRPGTPGAAMADQLPE 382 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK+ RL LQ L +QQ +FN + +G +VL+EK G++ G+L G+SPWLQ+V +++ + Sbjct: 383 AVKSTRLAELQTLLSDQQRAFNASRLGITCDVLLEKKGRQAGQLTGKSPWLQAVQVDAPD 442 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG I V I D+ ++L+G L Sbjct: 443 ALIGTIQPVEIVDIGANSLFGRLA 466 >gi|218682221|ref|ZP_03529822.1| putative 2-methylthioadenine synthetase (miaB-like) protein [Rhizobium etli CIAT 894] Length = 394 Score = 535 bits (1377), Expect = e-150, Method: Compositional matrix adjust. Identities = 250/371 (67%), Positives = 298/371 (80%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM D GYE M++ADL++LNTCHIREKAAEKVYS L Sbjct: 22 RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 81 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K + +G ++++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L +A+ Sbjct: 82 GRLREMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRQAK 141 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+RVVDT+Y++EDKFE L I + R RGVTAFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 142 QGRRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 201 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +SQ+V+EA KL++ GV EITLLGQNVNAW G G GE + DLLY L+EI GL RLR Sbjct: 202 RPVSQIVEEAEKLVEGGVREITLLGQNVNAWHGAGSGGEAWSLGDLLYRLAEIPGLARLR 261 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI+AH DL LMPYLHLPVQSGSDRILK+MNRRHTA EY +I RIR+ Sbjct: 262 YTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYLSLIARIRA 321 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPDIA+S DFI GFPGETD DF T+ LV ++ YAQAFSFKYS R GTPG+ + +QV E Sbjct: 322 VRPDIALSGDFITGFPGETDADFEDTLRLVAEVRYAQAFSFKYSTRPGTPGAELKDQVPE 381 Query: 385 NVKAERLLCLQ 395 +KAERL LQ Sbjct: 382 EIKAERLERLQ 392 >gi|319408022|emb|CBI81676.1| bifunctional enzyme [Bartonella schoenbuchensis R1] Length = 458 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 259/448 (57%), Positives = 337/448 (75%), Gaps = 2/448 (0%) Query: 21 CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 I PQ+ F+K+YGCQMN YDS RM D ++GY + +DADLI++NTCHIREKAAEK+ Sbjct: 11 SISPQKVFIKTYGCQMNTYDSQRMNDSLSAEGYVTTQTPNDADLILVNTCHIREKAAEKL 70 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 YS LGR+R ++ R + L++ V GCVAQAEG+EILRR+P V++VVGPQ Y+RLPELL Sbjct: 71 YSDLGRLRMIRQKRAPDK-PLIIGVTGCVAQAEGDEILRRAPTVDLVVGPQMYHRLPELL 129 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 ++A+ GK++V+T+Y+VEDKF L + +KRGV+AFLTIQEGCDKFCTFCVVPYTRG Sbjct: 130 KQAKQGKKIVETNYAVEDKFTHLPPHNKHAVQKRGVSAFLTIQEGCDKFCTFCVVPYTRG 189 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR + Q+ EA +LI+ GV EITLLGQNVN W G+ +G+ DLLY L+++ GL Sbjct: 190 AETSRPVEQITHEAIQLIEAGVKEITLLGQNVNGWHGQSANGKTWRLGDLLYHLAKLDGL 249 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLRYTTSHPRDM D LI AH DLD+LMPYLHLPVQSGSDRILK+MNR+H + Y ++I+ Sbjct: 250 KRLRYTTSHPRDMDDSLIAAHRDLDMLMPYLHLPVQSGSDRILKAMNRQHKSIHYLKLIE 309 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +IR+ RPDIA S DFIVGFPGETD+DF T+ L+ ++GY+ A+SFKYSPR GTPG+ M Sbjct: 310 KIRTARPDIAFSGDFIVGFPGETDEDFEETIKLIKQVGYSSAYSFKYSPRPGTPGATMKN 369 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 VDE VK RL LQ L +QQ +F + +GQ +LIEK G+ G++VGRSPWL VV+ Sbjct: 370 HVDETVKNSRLQRLQALLLDQQHTFLRSKIGQKTNILIEKSGRHLGQMVGRSPWLLPVVV 429 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +++ + G I+++ I + ++ GE V Sbjct: 430 DAQV-STGTIMEIHIKNASPNSFVGEKV 456 >gi|170741367|ref|YP_001770022.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Methylobacterium sp. 4-46] gi|229890618|sp|B0UNY0|MIAB_METS4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|168195641|gb|ACA17588.1| RNA modification enzyme, MiaB family [Methylobacterium sp. 4-46] Length = 447 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 253/442 (57%), Positives = 328/442 (74%), Gaps = 6/442 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVKSYGCQMNVYD+ RM D+ +G+ +M++AD+++LNTCHIREKAAEKVYS L Sbjct: 2 KKAFVKSYGCQMNVYDAARMVDLLGREGFAETEAMEEADVVILNTCHIREKAAEKVYSEL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R+LK R G + +VVAGCVAQAEG EI+ R+P V+VVVGPQ+Y+RLPELL RAR Sbjct: 62 GRVRDLKGERAGAGRETTIVVAGCVAQAEGREIIHRAPAVDVVVGPQSYHRLPELLARAR 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 GK VVDT++ ++DKF+ L R G +AFLT+QEGCDKFC FCVVPYTRG E+S Sbjct: 122 DGK-VVDTEFPLDDKFDHLPP-----RRVAGPSAFLTVQEGCDKFCAFCVVPYTRGAEVS 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +++++ EA +L G E+TL+GQNVNA+ G+G DG + L+ L+E+ G+ RLR Sbjct: 176 RPVAKILAEAERLAAGGARELTLIGQNVNAFHGEGPDGRPWSLGRLMRRLAEVPGIARLR 235 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH D +MPYLHLPVQSGSDRIL +MNRRH A YR++IDRIR+ Sbjct: 236 YTTSHPRDMDDDLIAAHRDCPAVMPYLHLPVQSGSDRILAAMNRRHDADTYRRLIDRIRA 295 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIA++SDFIVGFPGETD D TM LV +IG++ AFSFKYSPR GTP + + V E Sbjct: 296 ARPDIALTSDFIVGFPGETDADHAETMRLVAEIGFSGAFSFKYSPRPGTPAAESADAVPE 355 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ + Q +FN A +G+ +EVLIEK G+ G++ G+SP+LQ+V + ++ Sbjct: 356 AVKRERLAALQALIDGQARAFNLASLGRTVEVLIEKPGRHPGQVAGKSPYLQAVQIEAEP 415 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 IG I+ VR+T ++L+GE Sbjct: 416 AVIGTILPVRLTRAGSNSLFGE 437 >gi|220920281|ref|YP_002495582.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Methylobacterium nodulans ORS 2060] gi|219944887|gb|ACL55279.1| RNA modification enzyme, MiaB family [Methylobacterium nodulans ORS 2060] Length = 447 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 252/442 (57%), Positives = 328/442 (74%), Gaps = 6/442 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVKSYGCQMNVYD+ RM D+ +G+ +++AD++VLNTCHIREKAAEKVYS L Sbjct: 2 KKAFVKSYGCQMNVYDAARMVDLLGREGFTETAVIEEADVVVLNTCHIREKAAEKVYSEL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R+LK R + G + +VVAGCVAQAEG EI+ R+P V+VVVGPQ+Y+RLP+LL RAR Sbjct: 62 GRVRDLKGERAEAGRETTIVVAGCVAQAEGREIIHRAPAVDVVVGPQSYHRLPDLLRRAR 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++VVDT++ ++DKF+ L R GV++FLT+QEGCDKFC FCVVPYTRG E+S Sbjct: 122 -AEKVVDTEFPIDDKFDHLPP-----RRIAGVSSFLTVQEGCDKFCAFCVVPYTRGAEVS 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +++V+ EA +L G E+TL+GQNVNA+ G+G DG + LL L+E+ G+ RLR Sbjct: 176 RPVAKVLAEAERLAAGGARELTLIGQNVNAYHGEGPDGATWSLGRLLRRLAEVPGIARLR 235 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM D LI AH D LMPYLHLPVQSGSDR+L +MNR+H A Y ++IDRIR+ Sbjct: 236 YTTSHPRDMDDDLIAAHRDCPALMPYLHLPVQSGSDRVLAAMNRKHDAETYLRLIDRIRT 295 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIA+SSDFIVGFPGETD D ATM LV ++G+A AFSFKYSPR GTP + + V E Sbjct: 296 ARPDIALSSDFIVGFPGETDADHAATMRLVAEVGFASAFSFKYSPRPGTPAAESADAVPE 355 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ L EQ +FN A +G+ +EVL EK G+ G++ G+SP+LQ+V + + Sbjct: 356 AVKRERLAELQALLEEQNRAFNRATIGRTVEVLFEKPGRHPGQVAGKSPYLQAVQIEADP 415 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 IG ++ VR+T ++L+GE Sbjct: 416 AVIGTVLPVRLTRPGSNSLFGE 437 >gi|323138528|ref|ZP_08073596.1| RNA modification enzyme, MiaB family [Methylocystis sp. ATCC 49242] gi|322396162|gb|EFX98695.1| RNA modification enzyme, MiaB family [Methylocystis sp. ATCC 49242] Length = 482 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 252/459 (54%), Positives = 332/459 (72%) Query: 10 VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69 V++ V I D + VKSYGCQMNVYD+ RM D+ +GY + +DADL++LNT Sbjct: 18 VSNAVETIEDVTAKGGKVLVKSYGCQMNVYDATRMADLLGREGYAETANEEDADLVILNT 77 Query: 70 CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129 CHIREKAAEK+YS LG++ K R +G ++ +VVAGCVAQAEGEE+L+R V++VVG Sbjct: 78 CHIREKAAEKIYSELGKLALTKRERDAQGREMKIVVAGCVAQAEGEEVLKRQRAVDLVVG 137 Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189 PQ+Y+RLP+LL +A+ G+RV DT+++VEDKF L R RGV+AF+T+QEGCDKF Sbjct: 138 PQSYHRLPDLLRQAKDGRRVTDTEFAVEDKFHALPDPSRAQIRARGVSAFVTVQEGCDKF 197 Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249 C+FCVVPYTRG E+SR ++ +V E R+LID GV EITL+GQNVNA+RG G + + Sbjct: 198 CSFCVVPYTRGAEVSRPVADIVAETRRLIDAGVREITLIGQNVNAYRGADDKGREWGLAR 257 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL L+++ G+ RLRYTTSHP DM+ LI AH + LMPY+HLPVQSGSDRILK+MNRR Sbjct: 258 LLSHLADMDGVERLRYTTSHPVDMAQDLIDAHESIGKLMPYVHLPVQSGSDRILKTMNRR 317 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 HT +Y II R+R RPD+A+SSDFIVGFPGETD DF TM LV ++G+A +FSFKYSP Sbjct: 318 HTGADYLDIITRLRKARPDVAMSSDFIVGFPGETDADFEETMALVREVGFASSFSFKYSP 377 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 R GTPG+ +Q+DE K ERL LQ L EQ+ +FN A VG+ I+VL EK G+ +G++ Sbjct: 378 RPGTPGAERDDQIDEEAKRERLAALQALLEEQRQAFNTATVGREIDVLFEKPGRHEGQIA 437 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 G+SP++Q+V + IG + +V I ++L G L+ Sbjct: 438 GKSPYMQAVHVEGDPEMIGKVARVAIVAAGSNSLAGRLL 476 >gi|92115654|ref|YP_575383.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrobacter hamburgensis X14] gi|123083888|sp|Q1QS74|MIAB_NITHX RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|91798548|gb|ABE60923.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrobacter hamburgensis X14] Length = 473 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 246/442 (55%), Positives = 330/442 (74%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +KSYGCQMNVYD+ RM D ++G+ S ++ADL++LNTCHIREKA+EKVYS Sbjct: 4 PRKLHIKSYGCQMNVYDAQRMVDTLAAEGFVETASAEEADLVILNTCHIREKASEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R K+ ++G ++ VVVAGCVAQAEG+EI+RR+P+V+VVVGPQ+Y+ LP+LL RA Sbjct: 64 LGRLRAAKDQAARDGREMSVVVAGCVAQAEGDEIIRRAPVVDVVVGPQSYHHLPQLLARA 123 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + R ++T++ VEDKF L R RG++AF+T+QEGCDKFCTFCVVPYTRG E+ Sbjct: 124 KADGRALETEFPVEDKFGFLPQPSRQAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEV 183 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++++V++ ++L DNGV EITL+GQNVNA+ G G DG F LL+ L++I G+VRL Sbjct: 184 SRPVAKIVEDVQRLADNGVREITLIGQNVNAYHGDGPDGRPWPFGKLLHRLADIPGIVRL 243 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY+TSHPRD+ D LI+AH DL LMP++HLPVQSGSDRIL++MNRRHTA +YR+++DR R Sbjct: 244 RYSTSHPRDVEDSLIEAHRDLGALMPFVHLPVQSGSDRILEAMNRRHTADDYRRVVDRFR 303 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 VR DIA SSDFIVGFPGET+ DF AT+ LV +IGYA A+SFKYSPR GTP + M E V Sbjct: 304 HVRQDIAFSSDFIVGFPGETEQDFTATLALVTQIGYAGAYSFKYSPRPGTPAAEMKETVS 363 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 ERL+ LQ + QQ +FN A VG ++VL E+ + G++VGR+ +LQ + + Sbjct: 364 TADMDERLVRLQNLIDSQQSAFNRAAVGTTVDVLFERAARNPGQIVGRTAYLQPAHVVAS 423 Query: 444 NHNIGDIIKVRITDVKISTLYG 465 IG I+ V + ++ +L G Sbjct: 424 ADIIGQILPVTVASLERYSLLG 445 >gi|209966243|ref|YP_002299158.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodospirillum centenum SW] gi|229890626|sp|B6IVM2|MIAB_RHOCS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|209959709|gb|ACJ00346.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodospirillum centenum SW] Length = 466 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 249/447 (55%), Positives = 335/447 (74%), Gaps = 5/447 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMNVYDS RM D+ GYE ++ D AD+++LNTCHIREKAAEKVYS L Sbjct: 3 KKLYIKTYGCQMNVYDSGRMADVLAPLGYEPTDAPDGADMVILNTCHIREKAAEKVYSDL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143 GR+R L+ +R GG ++V V GCVAQAEG EI+ R+P V++V GPQTY++LPE++ RA Sbjct: 63 GRLRPLQAARAATGGRMIVAVGGCVAQAEGAEIMMRAPHVDMVFGPQTYHQLPEMVARAV 122 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R VV+TD+ VE KF+ S+ + G + G +AFL++QEGCDKFCT+CVVPYTRG E Sbjct: 123 RGTGGVVNTDFPVESKFD--SLPEEGAS-PAGPSAFLSVQEGCDKFCTYCVVPYTRGAEF 179 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++V+ EA +L+ +GV EITLLGQNVNA+ G G DG L+ +L+EI GL R+ Sbjct: 180 SRPAARVLAEAARLVADGVAEITLLGQNVNAYHGDGPDGTTWGLGRLVRNLAEIDGLARI 239 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP DM LI AH ++ LMP++HLPVQSG+DRIL++MNR+HTA +YR++++R+R Sbjct: 240 RYTTSHPNDMDAELIAAHAEVPQLMPFVHLPVQSGNDRILQAMNRKHTADDYRRVVERMR 299 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LEQV 382 + RPD+A+SSDFIVGFPGETD +F T+ LV +IGYAQA+SFKYS R GTP + M QV Sbjct: 300 AARPDLALSSDFIVGFPGETDQEFADTLRLVTEIGYAQAYSFKYSARPGTPAAAMDGRQV 359 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E+VKAERL LQ+ L QQ +FN ACVG++ VL ++ GK+ G+L+GR PW+Q+V + Sbjct: 360 PESVKAERLEALQQLLTAQQTAFNTACVGRVQPVLFDRRGKKPGQLLGRGPWMQAVHAEA 419 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 +G I++VRI D ++L G +VV Sbjct: 420 PERLLGRIVEVRIADAHANSLSGTVVV 446 >gi|146337215|ref|YP_001202263.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bradyrhizobium sp. ORS278] gi|229890450|sp|A4YJD7|MIAB_BRASO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|146190021|emb|CAL74013.1| Conserved hypothetical protein; putative MiaB-like tRNA modifying enzyme [Bradyrhizobium sp. ORS278] Length = 467 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 242/446 (54%), Positives = 327/446 (73%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +KSYGCQMNVYD+ RM D ++G+ DADL++LNTCHIREKA+EKVYS Sbjct: 4 PRKLHIKSYGCQMNVYDAQRMVDTLGAEGFVETADAGDADLVILNTCHIREKASEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R K + G + + VAGCVAQAEG EI+ R+P V+VVVGPQ+Y+ LP+LL +A Sbjct: 64 LGRLRVAKEEAARSGRAMQIAVAGCVAQAEGVEIISRAPTVDVVVGPQSYHHLPQLLAQA 123 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+R ++T++ EDKF L+ R RGV+AF+T+QEGCDKFCTFCVVPYTRG E+ Sbjct: 124 SRGERAIETEFPAEDKFGFLAKPSREAIRARGVSAFVTVQEGCDKFCTFCVVPYTRGAEM 183 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++++VD+ +L D+GV EITL+GQNVNA+ G+G DG T LLY ++EI G+ R+ Sbjct: 184 SRPVARIVDDVMQLTDSGVREITLIGQNVNAYHGEGPDGRTWTLGRLLYRIAEIPGVARI 243 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY+TSHP D+ D LI AH DL +MP++HLPVQSGSDRIL +MNR+H+A +YR+++DR R Sbjct: 244 RYSTSHPNDVDDGLIAAHRDLTAVMPFVHLPVQSGSDRILAAMNRKHSAADYRRVVDRFR 303 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 R DIA SSDFIVGFPGET++DFRAT+ L+D+IGYA A+SFKYSPR GTP ++M E V Sbjct: 304 GARDDIAFSSDFIVGFPGETEEDFRATLALIDQIGYAAAYSFKYSPRPGTPAADMQEMVS 363 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 ERL LQ + QQ +FN A +G +++VL E+ ++ G+LVGR+ +LQ + + Sbjct: 364 ATEMDERLERLQSLIDSQQAAFNKAAIGSVVDVLFEREARKPGQLVGRTAYLQPAHVMAS 423 Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469 + IG ++ VRI ++ +L GELV Sbjct: 424 SDIIGQVLPVRIDSLERYSLLGELVA 449 >gi|91974724|ref|YP_567383.1| tRNA-i(6)A37 modification enzyme MiaB [Rhodopseudomonas palustris BisB5] gi|123763150|sp|Q13EK7|MIAB_RHOPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|91681180|gb|ABE37482.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas palustris BisB5] Length = 473 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 247/456 (54%), Positives = 331/456 (72%), Gaps = 10/456 (2%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +KSYGCQMNVYD+ RM D+ +G+ ++DDADL++LNTCHIREKA+EKVYS Sbjct: 4 PRKLHIKSYGCQMNVYDAQRMVDVLAPEGFVETATVDDADLVILNTCHIREKASEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R ++ G + + VAGCVAQAEGEEI+RR+P+V+VVVGPQ+Y+ LP+LL RA Sbjct: 64 LGRLRLARDEAASSGRRMQIAVAGCVAQAEGEEIVRRAPVVDVVVGPQSYHHLPQLLARA 123 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R ++T++ VEDKF L R RG++AF+T+QEGCDKFCTFCVVPYTRG E+ Sbjct: 124 DQAGRALETEFPVEDKFGFLPQPRPETIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEV 183 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +S ++D+ ++L DNGV EITL+GQNVNA+ G+G D T LL L+ + G+VRL Sbjct: 184 SRPVSAIIDDVKRLADNGVREITLIGQNVNAYHGEGPDSRAWTLGRLLRRLAAVPGIVRL 243 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY+TSHP D+ D LI+AH DLD LMP++HLPVQSGSD IL +MNR+HTA +YR++IDR R Sbjct: 244 RYSTSHPNDVDDELIEAHRDLDALMPFVHLPVQSGSDPILAAMNRKHTAADYRRVIDRFR 303 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +VRP IA SSDFIVGFPGET+ DF AT+ LV +IGYA A+SFKYSPR GTP ++M E V Sbjct: 304 AVRPQIAFSSDFIVGFPGETEADFAATLALVTQIGYAGAYSFKYSPRPGTPAADMQEMVP 363 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL--- 440 V ERL LQ+ + QQ +FN A +GQ ++VL E+ G++ G++VGR+ +LQ + Sbjct: 364 AAVMDERLERLQQLIDSQQSAFNKAAIGQTVDVLFERAGRKPGQIVGRTAYLQPAHVFPG 423 Query: 441 -------NSKNHNIGDIIKVRITDVKISTLYGELVV 469 + + +G I+ VR+ ++ +L GEL Sbjct: 424 PMFLGPGMAPDSLVGQILPVRVDSLERYSLLGELAA 459 >gi|148251670|ref|YP_001236255.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bradyrhizobium sp. BTAi1] gi|229890449|sp|A5E855|MIAB_BRASB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|146403843|gb|ABQ32349.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bradyrhizobium sp. BTAi1] Length = 466 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 241/444 (54%), Positives = 325/444 (73%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +KSYGCQMNVYD+ RM D ++G+ DADL++LNTCHIREKA+EKVYS Sbjct: 4 PRKLHIKSYGCQMNVYDAQRMVDTLGAEGFVETAEAGDADLVILNTCHIREKASEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R K ++G + + VAGCVAQAEG EI+ R+P V+VVVGPQ+Y+ LPELL RA Sbjct: 64 LGRLRVAKEEAARQGRAMQIAVAGCVAQAEGAEIVTRAPTVDVVVGPQSYHHLPELLARA 123 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+ ++T++ EDKF L+ R RGV+AF+T+QEGCDKFCTFCVVPYTRG E+ Sbjct: 124 GRGEPAIETEFPAEDKFGFLARPSREAIRARGVSAFVTVQEGCDKFCTFCVVPYTRGSEM 183 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++++DE +L +NGV EITL+GQNVNA+ G+ DG T LLY ++EI G+ R+ Sbjct: 184 SRPVARILDEVTRLTENGVREITLIGQNVNAYHGEAPDGSTWTLGRLLYGIAEIPGVARI 243 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY+TSHP D+ D LI AH DL +MP++HLPVQSGSDRIL MNR+H A +YR+++DR R Sbjct: 244 RYSTSHPNDVDDSLIAAHRDLASVMPFVHLPVQSGSDRILGLMNRKHGASDYRKVVDRFR 303 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + RPDIA SSDFIVGFPGET++DFRAT+ L+ +IGYA A+SFKYSPR GTP ++M E V Sbjct: 304 AARPDIAFSSDFIVGFPGETEEDFRATLALIAQIGYAAAYSFKYSPRPGTPAADMQEMVS 363 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 ERL LQ + QQ +FN A +G +++VL E+ ++ G+LVGR+ +LQ + + Sbjct: 364 ATEMDERLERLQSLIDSQQAAFNKAAIGTVVDVLFERAARKPGQLVGRTAYLQPAHVMAP 423 Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467 ++ IG ++ VRI ++ +L GEL Sbjct: 424 DNIIGQVLPVRIDSLERYSLLGEL 447 >gi|114326782|ref|YP_743939.1| tRNA 2-methylthioadenosine synthase [Granulibacter bethesdensis CGDNIH1] gi|122328233|sp|Q0BVY6|MIAB_GRABC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|114314956|gb|ABI61016.1| tRNA 2-methylthioadenosine synthase [Granulibacter bethesdensis CGDNIH1] Length = 493 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 250/446 (56%), Positives = 324/446 (72%), Gaps = 3/446 (0%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R V ++GCQMNVYDS RM D+ GY + AD+IVLNTCHIR+KA EKV+S L Sbjct: 35 KRLHVITWGCQMNVYDSARMTDVLSPLGYTAHAEPEGADMIVLNTCHIRDKATEKVFSEL 94 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R LK +R +EG +L+ VAGCVAQAEGE+IL R+P V++V+GPQTY+RL ++ RA Sbjct: 95 GRLRLLKEARAREGQPMLLAVAGCVAQAEGEQILARAPYVDIVLGPQTYHRLGGMVRRAM 154 Query: 145 FGKRVVDTDYSVEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G+RV++TD+ EDKF+ L + G G TAFLTIQEGCDKFC+FCVVPYTRG Sbjct: 155 NGERVIETDFPPEDKFDYLPEAAAPQHGPGLAGGRTAFLTIQEGCDKFCSFCVVPYTRGA 214 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR S V+ EAR+++ G EITLLGQNVNA+ G G DGE T + L+ +L++I L+ Sbjct: 215 EVSRPASSVLAEARRMVRGGAREITLLGQNVNAYHGLGEDGEVWTLARLIRALADIPDLL 274 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHPRD+SD LI AH D+ LMP+LHLPVQSGSDRIL +MNRRHTA +Y +++DR Sbjct: 275 RIRYTTSHPRDVSDDLIAAHRDIPQLMPFLHLPVQSGSDRILAAMNRRHTAEDYFRVVDR 334 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPD+A+SSDFIVG PGETD+DF TM L++++G+AQA+SFKYSPR GTP + Sbjct: 335 LREARPDLALSSDFIVGHPGETDEDFEDTMRLIERVGFAQAYSFKYSPRPGTPAAERDNH 394 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V E V ERL LQ LR QQ +FN AC+G+ + VL+ G+ G++ GRSPWLQ+V L+ Sbjct: 395 VPEPVMDERLQRLQALLRTQQEAFNTACIGKTVNVLLVTPGRHPGQIGGRSPWLQAVHLD 454 Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467 + IG + V IT ++L L Sbjct: 455 APATLIGQEVPVTITAAHTNSLSATL 480 >gi|90421992|ref|YP_530362.1| tRNA-i(6)A37 modification enzyme MiaB [Rhodopseudomonas palustris BisB18] gi|123395291|sp|Q21C43|MIAB_RHOPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|90104006|gb|ABD86043.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas palustris BisB18] Length = 473 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 241/446 (54%), Positives = 321/446 (71%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +KS+GCQMNVYD+ RM D +G+ + D+ADL++LNTCHIREKA+EKVYS Sbjct: 4 PRKLHIKSFGCQMNVYDAQRMVDALAPEGFVETANADEADLVILNTCHIREKASEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R K+ +G + + VAGCVAQAEG EI+RR P V+VVVGPQ+Y+ LP+LL A Sbjct: 64 LGRLRVAKDEAALQGRRMNIAVAGCVAQAEGAEIIRRQPAVDVVVGPQSYHHLPQLLAEA 123 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G R ++T++ V+DKF L R RG++AF+T+QEGCDKFCTFCVVPYTRG E+ Sbjct: 124 ARGGRALETEFPVDDKFGFLPPPQPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEV 183 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + ++V++ R+L DNGV EITL+GQNVNA+ G G DG LL+ L++I G+VRL Sbjct: 184 SRPVDKIVEDVRRLADNGVREITLIGQNVNAYHGDGPDGRPWPLGALLHHLAKIPGIVRL 243 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY+TSHPRD+ LI AH DL LMP++HLPVQSGSD IL +MNR+H+A +YR+++DR R Sbjct: 244 RYSTSHPRDVDQSLIDAHRDLPALMPFVHLPVQSGSDAILAAMNRKHSADDYRRLVDRFR 303 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S P IA SSDFIVGFPGETD+DF AT+ LV +IGYA A+SFKYSPR GTP + + E V Sbjct: 304 SANPAIAFSSDFIVGFPGETDEDFAATLALVTQIGYAGAYSFKYSPRPGTPAAELQETVS 363 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 V ERL+ LQ+ + QQ +FN A +G +EVL E+ + G++VGR+ +LQ + + Sbjct: 364 AAVMDERLVRLQELIDSQQAAFNAAVIGTTVEVLFERAARNPGQIVGRTAYLQPAHVMAA 423 Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469 IG ++ VRI ++ +L GEL Sbjct: 424 PDIIGQVLPVRIDSLERYSLIGELAA 449 >gi|27375906|ref|NP_767435.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bradyrhizobium japonicum USDA 110] gi|81740085|sp|Q89W97|MIAB_BRAJA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|27349044|dbj|BAC46060.1| bll0795 [Bradyrhizobium japonicum USDA 110] Length = 465 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 243/446 (54%), Positives = 324/446 (72%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +KSYGCQMNVYD+ RM D +G+ S +DADL++LNTCHIREKA+EKVYS Sbjct: 4 PRKLHIKSYGCQMNVYDAQRMVDTLAPEGFVETASAEDADLVILNTCHIREKASEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R K+ + G + + VAGCVAQAEGEEI+RR+P+V+VVVGPQ+Y+ LPELL+RA Sbjct: 64 LGRLRVAKDEAARGGRAMQIAVAGCVAQAEGEEIVRRAPVVDVVVGPQSYHHLPELLKRA 123 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R V+T++ DKF L+ R RG++AF+T+QEGCDKFCTFCVVPYTRG E+ Sbjct: 124 GNEGRAVETEFPAADKFGFLAQPKPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEV 183 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++++VD+ ++L DNGV E+TL+GQNVNA+ G G DG+ LL L+ I G+ RL Sbjct: 184 SRPVARIVDDVKRLADNGVRELTLIGQNVNAYHGDGPDGKSWPLGRLLEHLAGIPGIARL 243 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY+TSHPRD+ D LI AH DL LMP++HLPVQSGSDRIL +MNR+HTA +YR++IDR R Sbjct: 244 RYSTSHPRDVDDSLIAAHRDLAALMPFVHLPVQSGSDRILAAMNRKHTADDYRRVIDRFR 303 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + R DIA SSDFIVGFPGE++ DF AT+ LV +IGYA A+SFKYS R GTP ++M E V Sbjct: 304 AARQDIAFSSDFIVGFPGESEQDFLATLALVTQIGYAAAYSFKYSARPGTPAADMQETVS 363 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 +RL LQ+ + QQ +FN A +G ++VL E+ ++ G++VGR+ +LQ + + Sbjct: 364 PAEMDQRLERLQELIDSQQSAFNKAAIGSTVDVLFERPARKDGQIVGRTAFLQPAHVMAS 423 Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469 IG I+ VRI ++ + GELV Sbjct: 424 PGIIGQILPVRIDSLERYSFLGELVT 449 >gi|86747716|ref|YP_484212.1| tRNA-i(6)A37 modification enzyme MiaB [Rhodopseudomonas palustris HaA2] gi|123408933|sp|Q2J2K9|MIAB_RHOP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|86570744|gb|ABD05301.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas palustris HaA2] Length = 468 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 242/451 (53%), Positives = 328/451 (72%), Gaps = 5/451 (1%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +KSYGCQMNVYD+ RM D+ +G+ S+DDADL++LNTCHIREKA+EKV+S Sbjct: 4 PRKLHIKSYGCQMNVYDAQRMVDVLAPEGFVETASVDDADLVILNTCHIREKASEKVFSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R ++ ++G + +VVAGCVAQAEG+EI+RR P V+VVVGPQ+Y+ LP LL +A Sbjct: 64 LGRLRLARDEASRDGRRMQIVVAGCVAQAEGDEIVRRQPAVDVVVGPQSYHHLPRLLAQA 123 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R ++T++ + DKF L R RG++AF+T+QEGCDKFCTFCVVPYTRG E+ Sbjct: 124 AQTGRALETEFPIADKFGFLPQPQPEAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEV 183 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ ++ + +L D+GV E+TL+GQNVNA+ G G DG T LL L+ + G+VRL Sbjct: 184 SRPVAAILADVERLADHGVRELTLIGQNVNAYHGDGPDGRPWTLGRLLQRLAAVPGIVRL 243 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY+TSHP D+ D LI AH DLD LMP++HLPVQSGSDRIL +MNR+HTA +YR++IDR R Sbjct: 244 RYSTSHPNDVDDDLIAAHRDLDALMPFVHLPVQSGSDRILAAMNRKHTAADYRRVIDRFR 303 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +VRP+IA SSDFIVGFPGETD DF AT+ LV +IGYA A+SFKYSPR GTP + M E V Sbjct: 304 AVRPEIAFSSDFIVGFPGETDADFEATLALVTQIGYAGAYSFKYSPRPGTPAAEMPEMVP 363 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL--- 440 V ERL LQ+ + QQ +FN A +G+ ++VL E+ G++ G++VGR+ +LQ + Sbjct: 364 AAVMDERLERLQQVIDAQQSAFNRAAIGRTVDVLFERAGRKPGQIVGRTAYLQPAHVFPP 423 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELVV 469 + + +G I+ VR+ ++ +L GEL Sbjct: 424 AGMAPDSLVGQILPVRVDSLERYSLLGELAA 454 >gi|157804180|ref|YP_001492729.1| hypothetical protein A1E_05140 [Rickettsia canadensis str. McKiel] gi|229890632|sp|A8F011|MIAB_RICCK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|157785443|gb|ABV73944.1| hypothetical protein A1E_05140 [Rickettsia canadensis str. McKiel] Length = 446 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 243/446 (54%), Positives = 338/446 (75%), Gaps = 7/446 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMNVYDS++M+D+ + GYE ++ +AD+I+LNTCHIREKAAEK+YS L Sbjct: 3 KKLYIKTYGCQMNVYDSVKMQDLLYPFGYESTENIKEADVIILNTCHIREKAAEKIYSEL 62 Query: 85 GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 GRI+ L+++R K G ++VVAGCVAQAEGEEI R+P V++VVGPQ+YY LPEL+ + Sbjct: 63 GRIKKLQDTRKKHGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K ++D D+ E KF++L + Y +G +AF+++QEGCDKFCTFCVVPYTRG+E Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGASAFISVQEGCDKFCTFCVVPYTRGVE 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR++ QV EA K++ NG EI LLGQNVNA+ GKG+D + + +DL+ L++I L R Sbjct: 179 FSRNVEQVYREALKVVSNGAREIMLLGQNVNAYHGKGVDDKIFSLADLIRYLAQIPNLER 238 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LRYTTSHP DM+D LIK H LMP++HLPVQSGS++ILK+MNR+H Y II+R+ Sbjct: 239 LRYTTSHPIDMTDDLIKLHSIESKLMPFVHLPVQSGSNKILKAMNRKHDREYYFNIINRL 298 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI +SSDFIVGFPGETD+DF T+DLV KI Y Q +SFKYSPR GTPG+ +Q+ Sbjct: 299 REARPDIVLSSDFIVGFPGETDEDFEDTLDLVRKIKYGQCYSFKYSPRPGTPGATRTDQI 358 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E++K+ERL LQK+L QQ++FN++CVG ++VL ++ GK G+++G++P++QSV +N+ Sbjct: 359 PEHIKSERLTILQKELSSQQLAFNESCVGSTMKVLFDRSGKFDGQIIGKTPYMQSVYINN 418 Query: 443 KNHN-IGDIIKVRITDVKISTLYGEL 467 N + + II V+IT ++L GE+ Sbjct: 419 TNQDLLCKIIDVKITKATSNSLTGEI 444 >gi|298293911|ref|YP_003695850.1| RNA modification enzyme, MiaB family [Starkeya novella DSM 506] gi|296930422|gb|ADH91231.1| RNA modification enzyme, MiaB family [Starkeya novella DSM 506] Length = 476 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 242/452 (53%), Positives = 330/452 (73%), Gaps = 10/452 (2%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +V+S+GCQMNVYD+ RM D +G+ +S DDADL++LNTCHIREKAAEKVYS Sbjct: 4 PRKLYVRSFGCQMNVYDAQRMTDTLAKEGFVETDSPDDADLVILNTCHIREKAAEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R + + G +V VAGCVAQAEG EI++R+ V++VVGPQ+Y++LPEL+ A Sbjct: 64 LGRLRKAQE---EAGRSQMVAVAGCVAQAEGAEIIKRARAVDLVVGPQSYHKLPELVAEA 120 Query: 144 RF-----GKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 + GKR +V+T++ VEDKF+ L KRG AF+T+QEGCDKFCTFCVVP Sbjct: 121 QARRDGNGKRAKLVETEFPVEDKFDFLPPPTSAAITKRGPAAFVTVQEGCDKFCTFCVVP 180 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 YTRG E+SR LS+++DE +L D+GV EITL+GQNVNA+ G G ++L+ ++E Sbjct: 181 YTRGAEVSRPLSKILDEVVRLADSGVREITLIGQNVNAYHGLDAGGRSANLAELVRRVAE 240 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + G+ R+RYTTSHPRDM + LI AHG++ LMPYLHLPVQSGS+RIL +MNR+H + Sbjct: 241 VPGIARVRYTTSHPRDMDEELIAAHGEMPALMPYLHLPVQSGSNRILAAMNRKHDRELFF 300 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 I++++R+ RPDIA SSDFIVGFPGETD+DF TMDLV+K+G+A AFSFKYSPR GTP + Sbjct: 301 DIVEKVRAARPDIAFSSDFIVGFPGETDEDFADTMDLVEKVGFASAFSFKYSPRPGTPAA 360 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 M Q+ E VK+ R+ LQ L Q+ +F++ C G+ E+L+EK G+ G+L+GRSP+LQ Sbjct: 361 GMEAQLPEAVKSARIHALQALLDGQKAAFDEGCRGRRFEILLEKPGRFPGQLIGRSPYLQ 420 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 SVV+ + IG + V + +V +L G+++ Sbjct: 421 SVVVEAPVEAIGTLAMVEVREVSTKSLSGDII 452 >gi|312113950|ref|YP_004011546.1| RNA modification enzyme, MiaB family [Rhodomicrobium vannielii ATCC 17100] gi|311219079|gb|ADP70447.1| RNA modification enzyme, MiaB family [Rhodomicrobium vannielii ATCC 17100] Length = 469 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 246/442 (55%), Positives = 323/442 (73%), Gaps = 9/442 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R F+K++GCQMNVYDS RM D + G+ + +DADL++LNTCHIREKAAEKV+S L Sbjct: 22 KRVFIKTFGCQMNVYDSERMADALGAAGFVETGAPEDADLVILNTCHIREKAAEKVFSEL 81 Query: 85 GRIRNLKNSRIKEGG-DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 GR+R L+ +R ++GG +L++ VAGCVAQAEGEEI RR+ V+++VGPQ+Y+RLPEL+ER Sbjct: 82 GRLRVLREARRQDGGGNLMIAVAGCVAQAEGEEIARRA-AVDIIVGPQSYHRLPELIER- 139 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R R V++T++ +KF L + +AFLT+QEGCDKFCTFCVVPYTRG Sbjct: 140 RASTRGPVIETEFPAAEKFASLP----APKLRAAPSAFLTVQEGCDKFCTFCVVPYTRGA 195 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++Q+++EA++L + GV EITLLGQNVNAW G+G G+ T DLL +LSE+ G+ Sbjct: 196 EYSRPVAQIIEEAKRLAERGVREITLLGQNVNAWAGEGPSGKTWTLPDLLAALSEVNGIA 255 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR+TTSHP DMSD LI AH DL LMPYLHLP QSGSDRILK+MNR+H +Y +I+ R Sbjct: 256 RLRFTTSHPNDMSDALIAAHRDLPKLMPYLHLPFQSGSDRILKAMNRKHRMEDYLRIVHR 315 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPD+A+S+D IVGFPGETD DF TM +V+++ +AQA+SFKYSPR GTP ++ Q Sbjct: 316 LRDARPDLALSTDIIVGFPGETDADFEETMRMVERVHFAQAYSFKYSPRPGTPAADRAAQ 375 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V E+VK+ERL LQ L QQ +FN A VG+ + VL E G+ +G++VGRSP+LQ V Sbjct: 376 VPEDVKSERLARLQALLFAQQTAFNAAMVGRTLSVLWESRGRNEGQVVGRSPYLQPVYAE 435 Query: 442 SKNHNIGDIIKVRITDVKISTL 463 IG I V I ++L Sbjct: 436 GDPALIGHIADVEIVAASQNSL 457 >gi|254511318|ref|ZP_05123385.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacteraceae bacterium KLH11] gi|221535029|gb|EEE38017.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacteraceae bacterium KLH11] Length = 439 Score = 511 bits (1316), Expect = e-143, Method: Compositional matrix adjust. Identities = 250/445 (56%), Positives = 322/445 (72%), Gaps = 9/445 (2%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ F+K+YGCQMNVYDS RM + QGY S DDAD+I+LNTCHIREKAAEKVYS Sbjct: 4 PKKLFIKTYGCQMNVYDSERMAEALGGQGYVETKSPDDADMILLNTCHIREKAAEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK E DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+ + Sbjct: 64 LGRFKGLK----AEKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAKT 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R G++ +DTD+ EDKFE+L KRG TAFLT+QEGCDKFC FCVVPYTRG E+ Sbjct: 120 RGGEKALDTDFPEEDKFEKLK---SRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++ EA+ L++ GV EITLLGQNVNA+ G G DG+ T + L++ L+++ GL R+ Sbjct: 177 SRPADRIIREAQDLVERGVREITLLGQNVNAYHGAGPDGD-MTLAALIWELNKVDGLERI 235 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP DM D LI+AHG D LMPYLHLPVQSGSDR+LK MNR HTA Y ++I+RIR Sbjct: 236 RFTTSHPNDMDDALIEAHGTCDKLMPYLHLPVQSGSDRVLKRMNRSHTAESYLRLIERIR 295 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 RPDI +S DFIVGFP ETD+DF+AT+DLV+++ Y A+SFKYS R GTP + QV+ Sbjct: 296 EARPDILMSGDFIVGFPEETDEDFQATLDLVEEVKYGYAYSFKYSTRPGTPAAER-PQVE 354 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 V ERL LQ + Q DA VGQ + VL EK G++ G++VG+S +L +V ++ Sbjct: 355 AEVADERLQRLQAMITRHQREIQDAMVGQTVSVLFEKPGRQPGQMVGKSEYLHAVHVSDT 414 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 + GD+ KV+IT ++L G L+ Sbjct: 415 DVEAGDLRKVKITASGANSLGGALI 439 >gi|163797130|ref|ZP_02191085.1| tRNA 2-methylthioadenosine synthase [alpha proteobacterium BAL199] gi|159177646|gb|EDP62199.1| tRNA 2-methylthioadenosine synthase [alpha proteobacterium BAL199] Length = 454 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 252/440 (57%), Positives = 314/440 (71%), Gaps = 10/440 (2%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNVYDS RM D+ GYE +S DDADLI+LNTCHIREKA EKVYS LGR+R LK+ Sbjct: 1 MNVYDSTRMVDVMAPHGYEPGDSPDDADLIILNTCHIREKATEKVYSELGRLRALKDEAA 60 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-----RFGKRVV 150 ++G +L+ VAGCVAQAEGEEI RR+P V++V GPQTY+RLPEL+ RA G VV Sbjct: 61 RQGRKMLIGVAGCVAQAEGEEIARRAPTVDLVFGPQTYHRLPELVVRALDRSLSGGAGVV 120 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 DTD+ E KF+ L +R +G AFL++QEGCDKFCTFCVVPYTRG E SR + V Sbjct: 121 DTDFPAEAKFDHLP----EESRSQGAAAFLSVQEGCDKFCTFCVVPYTRGAEFSRPAADV 176 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKGLVRLRYTTSH 269 + EAR+++ G EITLLGQNVNA+ G+ G L+ +L+EI GL R+RYTTSH Sbjct: 177 LVEARRMVAGGTVEITLLGQNVNAYHGEAATGGGTWGLGRLVRALAEIDGLERIRYTTSH 236 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 PRD+ D LI AH D+ LMPYLHLPVQSGSDRIL +MNR+HTA YR+IIDR+R RPD+ Sbjct: 237 PRDVDDELIAAHRDVPELMPYLHLPVQSGSDRILAAMNRKHTAEAYRRIIDRLRDARPDL 296 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 A SSDFIVGFPGETD DF T+ LV ++GYAQA+SFKYS R GTP ++M + V E VK E Sbjct: 297 AFSSDFIVGFPGETDQDFVETLRLVREVGYAQAYSFKYSARPGTPAADMGDAVPETVKTE 356 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449 RL LQ+ + QQ++FN G + VL E+ G G+L+GR PW+QSV ++ + +G Sbjct: 357 RLTALQQLIGAQQIAFNAGATGSVQSVLFERRGNRAGQLIGRGPWMQSVHADAPDRMLGR 416 Query: 450 IIKVRITDVKISTLYGELVV 469 I+ VRI D ++L G +VV Sbjct: 417 IVPVRILDGHANSLSGAVVV 436 >gi|300024986|ref|YP_003757597.1| RNA modification enzyme, MiaB family [Hyphomicrobium denitrificans ATCC 51888] gi|299526807|gb|ADJ25276.1| RNA modification enzyme, MiaB family [Hyphomicrobium denitrificans ATCC 51888] Length = 449 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 246/445 (55%), Positives = 320/445 (71%), Gaps = 7/445 (1%) Query: 24 PQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P+R +F+K++GCQMNVYDS RM + GY + +D ADL++LNTCHIREKAAEKVY Sbjct: 4 PERKTYFLKTFGCQMNVYDSERMAETLARDGYSETSDVDGADLVILNTCHIREKAAEKVY 63 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGRIR++KN R K+G + ++ VAGCVAQAEG EI R P V++V+GPQ+Y+RLPEL+ Sbjct: 64 SELGRIRDVKNERAKDGKNTVIAVAGCVAQAEGPEITARQPAVDLVIGPQSYHRLPELIT 123 Query: 142 RARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R K +V+T++ ++KF R+ R +AFLTIQEGCDKFCTFCVVPYTRG Sbjct: 124 RTTVDRKHIVETEFPGDEKFARMK----APRRISSPSAFLTIQEGCDKFCTFCVVPYTRG 179 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SRS++++ EA +L G E+ LLGQNVNA+ G+G DG + +DL+ +L+ I+G+ Sbjct: 180 SEYSRSVAKIEAEAHELARAGAKELVLLGQNVNAYHGEGADGRTASLADLIRTLAAIEGV 239 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RY TSHPRDMSD LI AH D+ LMP+LHLPVQSGSDRIL MNR+HTA EY +I Sbjct: 240 ERIRYMTSHPRDMSDDLIAAHADVPQLMPFLHLPVQSGSDRILAKMNRKHTAAEYVDLIA 299 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR RPDIA+SSDFIVGFPGET+ D T+ L++ +G+AQAFSFKYS R GTP + + Sbjct: 300 RIRKARPDIALSSDFIVGFPGETEQDAEDTIALIEAVGFAQAFSFKYSARPGTPAAGHGD 359 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 Q+DE VK+ERLL LQ L QQVSFN +G ++ VL E+ G+E G+ VGR+P+LQ V Sbjct: 360 QLDEAVKSERLLRLQAVLDAQQVSFNAQSLGGVVPVLFERKGREAGEFVGRTPYLQLVHA 419 Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465 + IG V + + + S+L G Sbjct: 420 AGEGDLIGKTANVAVNETRRSSLSG 444 >gi|114571572|ref|YP_758252.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Maricaulis maris MCS10] gi|122314895|sp|Q0AK79|MIAB_MARMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|114342034|gb|ABI67314.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Maricaulis maris MCS10] Length = 456 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 250/450 (55%), Positives = 325/450 (72%), Gaps = 12/450 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R F+K+YGCQMNVYDS RM+D+ GYE + + ADL++LNTCHIREKAAEKVYS L Sbjct: 6 KRLFIKTYGCQMNVYDSDRMKDVLTPLGYESAETPEGADLVILNTCHIREKAAEKVYSEL 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R LK+ + GG + + VAGCVAQAEG EI++R+P+V++VVGPQTY++LPEL+ +A Sbjct: 66 GRLRPLKDEKAASGG-MTIAVAGCVAQAEGAEIMKRAPVVDLVVGPQTYHKLPELIAQAH 124 Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRK-RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K +DT++ VEDKF+RL G +R+ G +AF+T+QEGCDKFCTFCVVPYTRG E Sbjct: 125 RAKGEALDTEFEVEDKFDRL-----GSDRQVEGYSAFVTVQEGCDKFCTFCVVPYTRGAE 179 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----FSDLLYSLSEIK 258 SR + Q+V E R L G+ E+TLLGQNVNA+ G G + L+ ++ I Sbjct: 180 WSRPVDQIVAEIRALAAKGIREVTLLGQNVNAFHGAPPSGREAEGAWGLGQLVRHVALIG 239 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R+R+TTSHPRDM + LI+A D LMPY HLPVQ+GSD+ILKSMNR+HTA EY I Sbjct: 240 GIERIRFTTSHPRDMDEVLIQAFADTPKLMPYFHLPVQAGSDKILKSMNRQHTAEEYVAI 299 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 IDR+R+ RPDIAIS D IVGFPGETD DF AT+DLV ++ +A FSFKYS R GTPG+ M Sbjct: 300 IDRLRAARPDIAISGDMIVGFPGETDADFEATLDLVRRVKFASCFSFKYSKRPGTPGAAM 359 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 QVDE VK+ RL LQ+ L +QQ +FN++ +G+ + VL EK G+ G+L GRSP+LQSV Sbjct: 360 FNQVDEGVKSARLAVLQELLSDQQAAFNESMIGRTLPVLFEKPGRMGGQLHGRSPYLQSV 419 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ IG + +VRI ++L G L Sbjct: 420 HVDGPAELIGQVGEVRIEAASRNSLSGSLT 449 >gi|316931567|ref|YP_004106549.1| RNA modification enzyme, MiaB family [Rhodopseudomonas palustris DX-1] gi|315599281|gb|ADU41816.1| RNA modification enzyme, MiaB family [Rhodopseudomonas palustris DX-1] Length = 463 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 236/445 (53%), Positives = 326/445 (73%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +KSYGCQMNVYD+ RM D +G+ ++DDADL++LNTCHIREKA+EKVYS Sbjct: 4 PRKLHIKSYGCQMNVYDAQRMVDALAPEGFVETANVDDADLVILNTCHIREKASEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R ++ G + + VAGCVAQAEGEEI+RR+P+V+VVVGPQ+Y+ LP+LL RA Sbjct: 64 LGRLRVARDEAASHGRRMQIAVAGCVAQAEGEEIIRRAPVVDVVVGPQSYHNLPQLLARA 123 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R ++T++ ++DKF L R RG++AF+T+QEGCDKFCTFCVVPYTRG E+ Sbjct: 124 NRDGRALETEFPIDDKFGVLPQPAPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEM 183 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ ++ + ++L D+GV E+TL+GQNVNA+ G G +G + L+ L+EI G+VRL Sbjct: 184 SRPVAAIIADVQRLADHGVREVTLIGQNVNAYHGDGPNGGAWSLGRLVRRLAEIPGIVRL 243 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY+TSHP D+ D L+ AH DL LMP++HLPVQSGSDRIL +MNR+HTA +YR++IDR R Sbjct: 244 RYSTSHPNDVDDDLLTAHRDLPALMPFVHLPVQSGSDRILAAMNRKHTADDYRRVIDRFR 303 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + IA SSDFIVGFPGET+ DF AT+ LV +IGYA A+SFKYSPR GTP + M E V Sbjct: 304 AASDAIAFSSDFIVGFPGETERDFSATLALVAQIGYAGAYSFKYSPRPGTPAAEMPEMVP 363 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 V ERL LQ+ + +QQ +FN A +G+ +EVL E+ G++ G++VGR+ +LQ + + Sbjct: 364 AAVMDERLERLQQLIDQQQAAFNKAAIGRTVEVLFERAGRKPGQIVGRTAYLQPAHVMAP 423 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 + +G ++ VR+ ++ +L GEL Sbjct: 424 DSIVGQVLPVRVDSLERYSLLGELA 448 >gi|84502860|ref|ZP_01000973.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanicola batsensis HTCC2597] gi|84388843|gb|EAQ01713.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanicola batsensis HTCC2597] Length = 440 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 258/446 (57%), Positives = 328/446 (73%), Gaps = 10/446 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ F+K+YGCQMNVYDS RM + GY V S ++AD+I+LNTCHIREKAAEKVYS Sbjct: 3 TPRKLFIKTYGCQMNVYDSERMAEALGGSGYTEVGSPEEADMILLNTCHIREKAAEKVYS 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR ++LK ++ DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+ + Sbjct: 63 ELGRYKDLKAAKP----DLKIGVAGCVAQAEGEEIIRRQPMVDLVVGPQSYHRLPEMEAK 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A ++VVDTD+ EDKFERL KRG TAFLT+QEGCDKFC FCVVPYTRG E Sbjct: 119 AGT-EKVVDTDFPEEDKFERLKARP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR +++V+ EAR L++ GV EITLLGQNVNA+ G+G DG + + L+ L+EI+GL R Sbjct: 175 VSRPVARVLTEARDLVERGVREITLLGQNVNAYHGEGPDGRDWSLAGLIRELAEIEGLER 234 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP DMSD LI AHG++ LMPYLHLPVQSGSDRILK MNR H Y ++IDRI Sbjct: 235 IRFTTSHPNDMSDDLIAAHGEVGKLMPYLHLPVQSGSDRILKRMNRSHDRDSYLRLIDRI 294 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPDI IS DFIVGFP ETD DFR TM L++++ Y QAFSFKYS R GTP + EQV Sbjct: 295 RAARPDILISGDFIVGFPEETDADFRDTMRLIEEVRYGQAFSFKYSTRPGTPAAER-EQV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E VK+ RL LQ + QQ + DA VGQ + VLIE+ G+ G++VG+S L +V L + Sbjct: 354 AEEVKSARLQELQALITRQQRAVQDAMVGQTVGVLIERAGRMPGQMVGKSDHLHAVHLTA 413 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 + GD+++VRIT+ ++L G L Sbjct: 414 -DLAPGDLVRVRITESGPNSLGGVLA 438 >gi|149914119|ref|ZP_01902650.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. AzwK-3b] gi|149811638|gb|EDM71471.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. AzwK-3b] Length = 446 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 248/445 (55%), Positives = 325/445 (73%), Gaps = 7/445 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMNVYDS RM + S GY ++ DDAD+I+LNTCHIREKAAEKVYS L Sbjct: 5 KKLYIKTYGCQMNVYDSERMAEAMGSAGYVETDTPDDADMILLNTCHIREKAAEKVYSEL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR R LK++R DL + VAGCVAQAEG+EI+RR P+V++VVGPQ+Y+RLP+L + R Sbjct: 65 GRFRPLKDARP----DLKIGVAGCVAQAEGDEIMRRQPLVDLVVGPQSYHRLPQLEAQTR 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G R +DTD+ ++DKFE L G RG TAFLT+QEGCDKFC FCVVPYTRG E S Sbjct: 121 TGARALDTDFPLDDKFEALKTR--GPKASRGPTAFLTVQEGCDKFCAFCVVPYTRGAEAS 178 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++++DEAR+L+D GV EITLLGQNVNA+ G G DG + + L+++L I GL R+R Sbjct: 179 RPAARILDEARELVDRGVREITLLGQNVNAYHGTGPDGSDWSLARLIWALDAIDGLERIR 238 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP DM+D LI+AH LMPYLHLPVQSGSDRILK MNR+HTA Y ++I+RIR+ Sbjct: 239 FTTSHPNDMADDLIEAHASCAKLMPYLHLPVQSGSDRILKRMNRKHTAESYLRLIERIRA 298 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDI +S DFIVGFP ET+ DF+ATMDL++++ Y A+SFKYS R GTP + Q+DE Sbjct: 299 ARPDILMSGDFIVGFPEETEADFQATMDLIEEVKYGYAYSFKYSTRPGTPAAER-AQLDE 357 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +VK +RL LQ ++ Q + DA VG+ + VL EK G+ G++VG+S +L +V + Sbjct: 358 DVKTDRLHRLQARITHHQRAIQDAMVGRTVGVLFEKPGRLPGQMVGKSDYLHAVHVADCP 417 Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469 GD+ +V IT+ ++L G LV Sbjct: 418 LQPGDLARVEITESGSNSLAGRLVA 442 >gi|254417885|ref|ZP_05031609.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brevundimonas sp. BAL3] gi|196184062|gb|EDX79038.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brevundimonas sp. BAL3] Length = 472 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 250/447 (55%), Positives = 322/447 (72%), Gaps = 7/447 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R F+K+YGCQMNVYDS RM D+ GY + AD ++LNTCHIREKAAEK+YS L Sbjct: 18 KRLFIKTYGCQMNVYDSERMADVLRPLGYAVTEDVRAADFVILNTCHIREKAAEKIYSEL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143 G++R L++ + + GGDL + VAGCVAQAEGEEI++R P V++VVGPQ Y++LPELL R A Sbjct: 78 GKLRELRDIKRETGGDLTIAVAGCVAQAEGEEIMKRQPAVDIVVGPQAYHQLPELLTRTA 137 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R + D++ +DKF+ L G TAFLT+QEGCDKFCTFCVVPYTRG E Sbjct: 138 RARGERIGADFAPDDKFDALPAA----RFTEGPTAFLTVQEGCDKFCTFCVVPYTRGAEW 193 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR L+ V++EAR L GV E+TLLGQNVNA+ G+ DG K + +L Y+L+EI GL R+ Sbjct: 194 SRPLASVLEEARALAGRGVREVTLLGQNVNAYDGERPDGRKSSLVELAYALAEIPGLDRI 253 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP DMSD LI AHGDLD LMPYLHLPVQ+GSDRIL+ MNR+H Y +IDRIR Sbjct: 254 RYTTSHPNDMSDDLIAAHGDLDALMPYLHLPVQAGSDRILRLMNRKHGRQTYFDLIDRIR 313 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + RPDIA++ DFIVGFPGETD +F T+DLV ++ YA AF+F YSPR GTP + M +QV+ Sbjct: 314 ATRPDIAMAGDFIVGFPGETDREFEDTLDLVRRVNYASAFAFMYSPRPGTPAAGMGKQVE 373 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVLN 441 V +RL L + L EQQ++FN A G+ + VL ++ G+ + + VGRSP+LQSV ++ Sbjct: 374 PEVAKDRLHRLIELLTEQQIAFNAAQAGRTLNVLFDRKGRHGSRRQAVGRSPYLQSVHVD 433 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +H IG I+ V I + ++L G LV Sbjct: 434 GADHLIGRIVPVEIIAGQHNSLTGRLV 460 >gi|89053188|ref|YP_508639.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Jannaschia sp. CCS1] gi|122999629|sp|Q28UJ8|MIAB_JANSC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|88862737|gb|ABD53614.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Jannaschia sp. CCS1] Length = 462 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 247/444 (55%), Positives = 326/444 (73%), Gaps = 9/444 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVK+YGCQMNVYDS RM + +GYE+VN+ + AD+I+LNTCHIREKAAEK+YS L Sbjct: 28 KKLFVKTYGCQMNVYDSERMAEALGGEGYEQVNTPEGADMILLNTCHIREKAAEKMYSEL 87 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R L+++ DL + VAGCVAQAEGEEI+RR P+V++VVGPQTY+RLP+++E Sbjct: 88 GRLRPLRDANP----DLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQTYHRLPKMMEAVN 143 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ +DTD+ EDKF L RG TAFLT+QEGCDKFC FCVVPYTRG E+S Sbjct: 144 AGEKALDTDFPEEDKFLNLPKA----RATRGPTAFLTVQEGCDKFCAFCVVPYTRGAEVS 199 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS +++ EAR L+D GV EITLLGQNVNA+ G G DG + L+ +++I GL R+R Sbjct: 200 RSAERLMAEARDLVDRGVREITLLGQNVNAYHGAG-DGGTWGLARLIREMAKIDGLDRIR 258 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP DM D LI AHGD LMPYLHLPVQ+GSD+ILK+MNR+HTA +Y ++IDRIR Sbjct: 259 FTTSHPNDMEDDLIAAHGDCPELMPYLHLPVQAGSDKILKAMNRKHTAADYIRLIDRIRD 318 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPD+ +S DFIVGFPGET++DF+AT+DLV+ +GY A+SFKYS R GTP + QV E Sbjct: 319 ARPDLHLSGDFIVGFPGETEEDFQATLDLVETVGYGTAYSFKYSARPGTPAAERTGQVSE 378 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 ++RL LQ L +QQ + DA VG+ ++VL EK G+ G+++G+S +L SV ++ + Sbjct: 379 AEASDRLQRLQALLTQQQRAAQDAMVGRRVKVLFEKPGRNPGQMIGKSEYLHSVHVDGPD 438 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 G I +V I + K ++L G LV Sbjct: 439 TLRGQIAEVEIAESKTNSLTGRLV 462 >gi|115522235|ref|YP_779146.1| RNA modification protein [Rhodopseudomonas palustris BisA53] gi|122298059|sp|Q07V68|MIAB_RHOP5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|115516182|gb|ABJ04166.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas palustris BisA53] Length = 465 Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust. Identities = 241/445 (54%), Positives = 318/445 (71%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +KS+GCQMNVYD+ RM D +G+ S DDADL++LNTCHIREKAAEKVYS Sbjct: 4 PRKLHIKSFGCQMNVYDAQRMVDALAPEGFVETQSADDADLVILNTCHIREKAAEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG++R LK G + VAGCVAQAEG EI+RR P V+VVVGPQ+Y+ LPELLE+A Sbjct: 64 LGKLRLLKQDAASHGRRFEIAVAGCVAQAEGAEIIRRQPAVDVVVGPQSYHHLPELLEKA 123 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R R ++T++ +EDKF L R RGV+AF+T+QEGCDKFC+FCVVPYTRG E+ Sbjct: 124 RRDGRALETEFPIEDKFGVLPPPRPDAIRARGVSAFVTVQEGCDKFCSFCVVPYTRGAEM 183 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++++D+ ++LIDNGV EITL+GQNVNA+ G+G D T LL L+ + G+ RL Sbjct: 184 SRPVAKILDDVKRLIDNGVREITLIGQNVNAYHGEGPDDRPWTLGALLRHLASVPGVARL 243 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY+TSHP D+ D LI AH +L LMP++HLPVQSGSD IL +MNRRH+A +YR++IDR R Sbjct: 244 RYSTSHPLDVDDELIAAHRELPGLMPFVHLPVQSGSDAILAAMNRRHSADDYRRVIDRFR 303 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P IA SSDFIVGFPGETD DF AT+ LV +IGYA A+SFKYSPR GTP + + E V Sbjct: 304 QADPSIAFSSDFIVGFPGETDRDFEATLALVTQIGYAGAYSFKYSPRPGTPAAELQEMVA 363 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 V +RL LQ + QQ +FN A +G ++VL E+ + G++VGR+ +LQ + + Sbjct: 364 PAVMDQRLEQLQGLIDSQQAAFNRASIGTTVDVLFERAARHPGQIVGRTAYLQPAHVMAA 423 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 + +G ++ V I ++ +L GELV Sbjct: 424 DDIVGQVLPVTIHSLERYSLIGELV 448 >gi|149186041|ref|ZP_01864355.1| 2-methylthioadenine synthetase [Erythrobacter sp. SD-21] gi|148830072|gb|EDL48509.1| 2-methylthioadenine synthetase [Erythrobacter sp. SD-21] Length = 449 Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust. Identities = 244/444 (54%), Positives = 316/444 (71%), Gaps = 9/444 (2%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ + VKS+GCQMNVYD RM +M QG ++ADL+VLNTCHIREKAAEKVYS Sbjct: 7 PKTYRVKSFGCQMNVYDGERMAEMLGEQGIVPAPEGEEADLVVLNTCHIREKAAEKVYSD 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +GR L + K G + L+ VAGCVAQAEGEEI++RSP V++VVGPQ Y+RLPE+L++A Sbjct: 67 IGR---LAKAGRKAGKEPLIAVAGCVAQAEGEEIMKRSPAVSMVVGPQAYHRLPEMLDKA 123 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+R DTD KF L R+ +FLT+QEGCDKFCT+CVVPYTRG EI Sbjct: 124 VKGERATDTDMPAIAKFAALP-----ERRRTNPASFLTVQEGCDKFCTYCVVPYTRGAEI 178 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +V EA+KL+D G EITLLGQNV+AW G+ G + + L+ L+++ GL R+ Sbjct: 179 SRPYADLVTEAKKLVDAGAKEITLLGQNVSAWSGEDEKGHRVGLAGLIRDLAKVDGLARI 238 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP DM D LI AHG++D LMP+LHLPVQ+GSDR+LK+MNR HTA Y +++DR R Sbjct: 239 RYTTSHPADMDDDLIAAHGEIDKLMPFLHLPVQAGSDRVLKAMNRSHTAESYLKLLDRFR 298 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + RPD+A+S DFIVGFPGETD +F T+ LVD++ YAQAFSFKYSPR GTP + M QV Sbjct: 299 AARPDLALSGDFIVGFPGETDAEFEETLALVDEVRYAQAFSFKYSPRPGTPAATMDGQVS 358 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + V ERL LQ L Q++FN+A VG+ EVL+E+ GK G+ +G+SPWLQSV + Sbjct: 359 KEVMDERLQRLQAALNRDQLAFNEASVGKTCEVLVERKGKHAGQWLGKSPWLQSVWFEGE 418 Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467 IGD+++ + + ++L G L Sbjct: 419 AR-IGDLVQAELVEAGPNSLAGRL 441 >gi|296532216|ref|ZP_06894966.1| MiaB family RNA modification enzyme [Roseomonas cervicalis ATCC 49957] gi|296267460|gb|EFH13335.1| MiaB family RNA modification enzyme [Roseomonas cervicalis ATCC 49957] Length = 464 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 244/449 (54%), Positives = 315/449 (70%), Gaps = 7/449 (1%) Query: 23 VPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 PQR F++++GCQMNVYDS RM D+ GY + ++AD+++LNTCHIREKA+EKV Sbjct: 12 APQRKKLFIRTWGCQMNVYDSTRMADVLAPLGYGPAETPEEADMVILNTCHIREKASEKV 71 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 +S LGR+R LK + + G +++ VAGCVAQAEG EI R+P V++V+GPQTY+RLPE++ Sbjct: 72 FSDLGRLRLLKTEKEQAGQKMVLAVAGCVAQAEGAEITVRAPWVDIVLGPQTYHRLPEMV 131 Query: 141 ERA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 RA R +DTD+ VE KF+ L V N +G AFLTIQEGCDKFC+FCVVPYTR Sbjct: 132 ARASRAAGAQIDTDFPVEQKFDLLPEV----NANQGPIAFLTIQEGCDKFCSFCVVPYTR 187 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR ++ ++ EAR+L+ G EI LLGQNVNAW G+ DG + S LLY+L+EI G Sbjct: 188 GAEFSRPVAAILAEARRLVAGGAREIALLGQNVNAWHGEAPDGSTWSLSRLLYALAEIDG 247 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+RYTTSHPRDM D LI+AHG + LMP+LHLPVQSGSD++L +MNR H A + +I Sbjct: 248 LARIRYTTSHPRDMDDALIEAHGRIPQLMPFLHLPVQSGSDKVLAAMNRGHKAELFYRIA 307 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 DR+R RPD+A+SSDFIVG PGET D ATM LV+K+G+A A+SFKYSPR GTP + Sbjct: 308 DRLREARPDMALSSDFIVGHPGETAADHAATMQLVEKVGFALAYSFKYSPRPGTPAAGQP 367 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 QV E K RL LQ LR QQ FN ACVG+ +++L G+ G++ GR+PWLQ V Sbjct: 368 FQVPEAEKDARLQELQAVLRRQQDEFNRACVGREVDILWTGPGRHPGQIAGRTPWLQPVH 427 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 G I +VR+TD ++L L+ Sbjct: 428 AIGPAELAGRIARVRLTDAHPNSLSAVLL 456 >gi|67459670|ref|YP_247294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia felis URRWXCal2] gi|75535934|sp|Q4UK06|MIAB_RICFE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|67005203|gb|AAY62129.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia felis URRWXCal2] Length = 445 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 242/447 (54%), Positives = 337/447 (75%), Gaps = 7/447 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMNVYDS++M+D+ + GYE +++DAD+I+L TCHIREKAAEK YS L Sbjct: 3 KKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEDADVIILITCHIREKAAEKTYSEL 62 Query: 85 GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 GRI+ L+++R K+G ++VVAGCVAQAEGEEI R+P V++VVGPQ+YY LPEL+ + Sbjct: 63 GRIKKLQDTRKKQGLNSAIIVVAGCVAQAEGEEIFSRAPYVDIVVGPQSYYNLPELISKV 122 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K ++D D+ E KF+ L + Y +G ++F+++QEGCDKFCTFCVVPYTRG E Sbjct: 123 VRHEKHLIDLDFVEEAKFDNLP--EQLY--PQGASSFISVQEGCDKFCTFCVVPYTRGAE 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR++ QV EA K++ +G EITLLGQNVNA+ GKG D + T +DLL L++I L R Sbjct: 179 FSRNVEQVYREALKVVSSGAKEITLLGQNVNAYHGKGPDDKIFTLADLLGHLAQIPNLER 238 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LRY TSHP DM+D LIK HG LMP+LHLPVQSGS++ILK+MNR+H Y II+R+ Sbjct: 239 LRYMTSHPIDMTDDLIKLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDRDYYFDIINRL 298 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI +SSDFIVGFPGETD+DF T+DLV ++ Y Q +SFKYSPR GTPG+ +QV Sbjct: 299 RETRPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQV 358 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E++K+ERL LQ++L QQ++FN++CVG I++VL +++GK +++G++P++QSV + + Sbjct: 359 PEHIKSERLTILQQELTAQQLAFNESCVGSIMKVLFDRNGKFDDQIIGKTPYMQSVYIQN 418 Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468 N + +G I V+IT ++L GE++ Sbjct: 419 PNKSLLGKITDVKITKAASNSLTGEVI 445 >gi|84688004|ref|ZP_01015867.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Maritimibacter alkaliphilus HTCC2654] gi|84663985|gb|EAQ10486.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium HTCC2654] Length = 443 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 252/452 (55%), Positives = 330/452 (73%), Gaps = 9/452 (1%) Query: 17 IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 + DQ P++ F+++YGCQMNVYDS RM + QGY V S D+AD+I+LNTCHIREKA Sbjct: 1 MTDQSTDPKKLFIRTYGCQMNVYDSERMAEAMGGQGYVEVGSPDEADMILLNTCHIREKA 60 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 AEKVYS LGR ++LK+++ DL + VAGCVAQAEGEEI+RR P+V++VVGPQTY+RL Sbjct: 61 AEKVYSELGRFKDLKDAKP----DLKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQTYHRL 116 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 PE++E+ G++ +DTD+ +EDKFE ++ KR TAFLT+QEGCDKFC FCVVP Sbjct: 117 PEMVEKVGRGEKALDTDFPLEDKFE---VLKNRPTAKRAPTAFLTVQEGCDKFCAFCVVP 173 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 YTRG E+SR +++ EAR+L++ GV EITLLGQNVNA+ G G DG + + L+++L++ Sbjct: 174 YTRGAEVSRPPERILREARELVERGVREITLLGQNVNAYHGAG-DGGDWSLARLIWALND 232 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I GL R+R+TTSHP DMSD LI AHG+ LMPYLHLPVQSGSDRILK MNR+HTA EY Sbjct: 233 IDGLERIRFTTSHPNDMSDDLIAAHGECAKLMPYLHLPVQSGSDRILKRMNRKHTAEEYL 292 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++I+RIR+ RPDI IS DFIVGFP ETD DF T+DL+ + Y QAFSFKYS R GTP + Sbjct: 293 RLIERIRAARPDILISGDFIVGFPEETDRDFEDTLDLIRAVNYGQAFSFKYSSRPGTPAA 352 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 VDE ++RL LQ + EQ D VG+ I VL EK G+ +G++ G+S +L Sbjct: 353 ER-PLVDEAEASDRLHRLQALINEQARGVMDGMVGREIGVLFEKPGRMEGQMAGKSDYLH 411 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V + ++ GD+ +VRIT+ ++L G LV Sbjct: 412 AVHVKAEGIAPGDLRRVRITEAGPNSLAGALV 443 >gi|241068677|ref|XP_002408506.1| conserved hypothetical protein [Ixodes scapularis] gi|215492494|gb|EEC02135.1| conserved hypothetical protein [Ixodes scapularis] Length = 446 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 240/444 (54%), Positives = 334/444 (75%), Gaps = 7/444 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMN+YDS++M+D+ + GYE +++DAD+I+LNTCHIREKAAEK YS L Sbjct: 3 KKLYIKTYGCQMNIYDSVKMQDLLYPFGYEPTENIEDADVIILNTCHIREKAAEKTYSEL 62 Query: 85 GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 GRI+ ++++R K+G ++VVAGCVAQAEGEEI R+P V++VVGPQ+YY LPEL+ + Sbjct: 63 GRIKKIQDTRKKQGLNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K ++D D+ E KF++L + Y +G +AF+++QEGCDKFCTFCVVPYTRG E Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGTSAFISVQEGCDKFCTFCVVPYTRGAE 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR++ QV EA K++ +G EI LLGQNVNA+ GKG + + +DLL L++I L R Sbjct: 179 FSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNLER 238 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LRYTTSHP DM+D LIK HG LMP+LHLPVQSGS++ILKSMNR+H Y II+R+ Sbjct: 239 LRYTTSHPIDMNDDLIKLHGTEPKLMPFLHLPVQSGSNKILKSMNRKHDREYYFDIINRL 298 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI +SSDFIVGFPGETD+DF T+DLV ++ Y Q +SFKYSPR GTPG+ +Q+ Sbjct: 299 REARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQI 358 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E++K+ERL LQK+L QQ++FN++CVG ++VL + GK +++G++P++QSV + + Sbjct: 359 PEHIKSERLTILQKELMAQQLAFNESCVGSTMKVLFDHDGKFDDQIIGKTPYMQSVYIQN 418 Query: 443 KNHN-IGDIIKVRITDVKISTLYG 465 N + +G II V+IT +++L G Sbjct: 419 PNKSLLGKIIDVKITKASLNSLTG 442 >gi|239946801|ref|ZP_04698554.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rickettsia endosymbiont of Ixodes scapularis] gi|239921077|gb|EER21101.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rickettsia endosymbiont of Ixodes scapularis] Length = 464 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 240/444 (54%), Positives = 334/444 (75%), Gaps = 7/444 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMN+YDS++M+D+ + GYE +++DAD+I+LNTCHIREKAAEK YS L Sbjct: 21 KKLYIKTYGCQMNIYDSVKMQDLLYPFGYEPTENIEDADVIILNTCHIREKAAEKTYSEL 80 Query: 85 GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 GRI+ ++++R K+G ++VVAGCVAQAEGEEI R+P V++VVGPQ+YY LPEL+ + Sbjct: 81 GRIKKIQDTRKKQGLNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 140 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K ++D D+ E KF++L + Y +G +AF+++QEGCDKFCTFCVVPYTRG E Sbjct: 141 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGTSAFISVQEGCDKFCTFCVVPYTRGAE 196 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR++ QV EA K++ +G EI LLGQNVNA+ GKG + + +DLL L++I L R Sbjct: 197 FSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNLER 256 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LRYTTSHP DM+D LIK HG LMP+LHLPVQSGS++ILKSMNR+H Y II+R+ Sbjct: 257 LRYTTSHPIDMNDDLIKLHGTEPKLMPFLHLPVQSGSNKILKSMNRKHDREYYFDIINRL 316 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI +SSDFIVGFPGETD+DF T+DLV ++ Y Q +SFKYSPR GTPG+ +Q+ Sbjct: 317 REARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQI 376 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E++K+ERL LQK+L QQ++FN++CVG ++VL + GK +++G++P++QSV + + Sbjct: 377 PEHIKSERLTILQKELMAQQLAFNESCVGSTMKVLFDHDGKFDDQIIGKTPYMQSVYIQN 436 Query: 443 KNHN-IGDIIKVRITDVKISTLYG 465 N + +G II V+IT +++L G Sbjct: 437 PNKSLLGKIIDVKITKASLNSLTG 460 >gi|254474407|ref|ZP_05087793.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria sp. R11] gi|214028650|gb|EEB69485.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria sp. R11] Length = 440 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 252/449 (56%), Positives = 326/449 (72%), Gaps = 15/449 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ F+K+YGCQMNVYDS RM + +GY S DDAD+I+LNTCHIREKAAEKVYS Sbjct: 3 APKKLFIKTYGCQMNVYDSERMAEALGGEGYVETKSPDDADMILLNTCHIREKAAEKVYS 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR + LK + DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+ + Sbjct: 63 ELGRFKGLKADKP----DLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAK 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTR 199 AR G++V+DTD+ EDKFE+L NR KRG TAFLT+QEGCDKFC FCVVPYTR Sbjct: 119 ARTGEKVLDTDFPEEDKFEKLK------NRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTR 172 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E+SR +++ EAR L++ GV EITLLGQNVNA+ G G +G+ T + L++ L ++ G Sbjct: 173 GAEVSRPADRILREARDLVERGVREITLLGQNVNAYHGAGPNGD-MTLAQLIWELDKVDG 231 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+TTSHP DM D LI+AHG LMPYLHLPVQ+GSD+ILK MNR HTA Y ++I Sbjct: 232 LERIRFTTSHPNDMQDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRAHTAESYIRLI 291 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +RIR+ RPDI IS DFIVGFP ET++DF+ATMDLV+++ Y A+SFKYS R GTP + Sbjct: 292 ERIRAARPDILISGDFIVGFPEETEEDFQATMDLVEEVKYGTAYSFKYSTRPGTPAAERA 351 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 QVD +RL LQ L +QQ D+ VG+ + VL EK G+ G++VG+S +L +V Sbjct: 352 -QVDPAAADDRLQRLQALLTQQQREVQDSMVGREVGVLFEKAGRLPGQMVGKSDYLHAVH 410 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + NIGD+ +VRI ++L GEL+ Sbjct: 411 VADCDRNIGDLARVRIVSSGPNSLAGELI 439 >gi|103487545|ref|YP_617106.1| tRNA-i(6)A37 modification enzyme MiaB [Sphingopyxis alaskensis RB2256] gi|123379656|sp|Q1GRE9|MIAB_SPHAL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|98977622|gb|ABF53773.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sphingopyxis alaskensis RB2256] Length = 444 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 248/443 (55%), Positives = 313/443 (70%), Gaps = 10/443 (2%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ F VKS+GCQMNVYD RM +M ++GY DADL+VLNTCHIREKAAEKVYS Sbjct: 6 PKTFHVKSFGCQMNVYDGERMAEMLGAEGYVPAADGADADLVVLNTCHIREKAAEKVYSD 65 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +GR++ +G + VAGCVAQAEG EI RR+P V+VVVGPQ Y+RLPEL+ RA Sbjct: 66 IGRLKR------DDGSTPTIAVAGCVAQAEGAEIARRAPSVDVVVGPQAYHRLPELIARA 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G++ +D D E KF L G N++ TAFLT+QEGCDKFCT+CVVPYTRG EI Sbjct: 120 ERGEKAIDLDMPAESKFGALPKRSG--NQR--PTAFLTVQEGCDKFCTYCVVPYTRGAEI 175 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + ++ EAR L+ GV EITLLGQNVNAW G+ G L+ L++ GL R+ Sbjct: 176 SRPFADLIAEARALVAGGVREITLLGQNVNAWIGEDAKGRAIGLDGLIRELAKEDGLERI 235 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP DM+D LI AHG++D LMP+LHLPVQ+GSDRIL +MNR H+ Y ++I+R+R Sbjct: 236 RYTTSHPNDMTDGLIVAHGEVDKLMPFLHLPVQAGSDRILAAMNRSHSVESYLKVIERVR 295 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 RPDIAIS DFIVGFPGE++ DF AT+D+V YA A+SFKYS R GTP + M +Q+D Sbjct: 296 EARPDIAISGDFIVGFPGESEADFAATLDIVRATRYAMAYSFKYSRRPGTPAATMDDQID 355 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 E V ERL LQ L EQQ +FN+A VG+ +L+E+ GK +G+L+G+SPWLQSV + + Sbjct: 356 EAVMNERLQRLQALLNEQQQAFNEATVGRTTRLLLERKGKREGQLIGKSPWLQSVHVTAP 415 Query: 444 NHNIGDIIKVRITDVKISTLYGE 466 IGD+I VRIT ++L E Sbjct: 416 GLAIGDMIDVRITSAGPNSLGAE 438 >gi|182678041|ref|YP_001832187.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Beijerinckia indica subsp. indica ATCC 9039] gi|229890430|sp|B2IIK5|MIAB_BEII9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|182633924|gb|ACB94698.1| RNA modification enzyme, MiaB family [Beijerinckia indica subsp. indica ATCC 9039] Length = 510 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 235/452 (51%), Positives = 324/452 (71%), Gaps = 1/452 (0%) Query: 19 DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78 D + ++ FVKSYGCQMNVYD+ RM D+ +GY ++ +DADL++LNTCHIRE AAE Sbjct: 28 DPLVNTRKLFVKSYGCQMNVYDAERMADLLAPEGYAETSAPEDADLVILNTCHIREHAAE 87 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 KV+S LG++R LK + G + +VVAGCVAQAEGEEILRR V++VVGPQ+Y+RLP+ Sbjct: 88 KVFSELGKLRLLKAEQQAAGRPVKIVVAGCVAQAEGEEILRRQKAVDLVVGPQSYHRLPD 147 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 LL R +VDT++ EDKF+ L +RGV AF+T+QEGCDKFC+FCVVPYT Sbjct: 148 LLRRVAHTPGLVDTEFPAEDKFDHLVAPQPEKIAERGVGAFVTVQEGCDKFCSFCVVPYT 207 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGEKCTFSDLLYSLSEI 257 RG E SR + ++ E LI +GV E+TL+GQNVNA+ G + G + + L+ ++ + Sbjct: 208 RGAETSRPVEAILAEVETLIASGVREVTLIGQNVNAYHGFDAMTGAPASLASLMARVAAM 267 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 GL+R+RYTTSHP DM + LI AH D+ LMP+LHLPVQSGSD+IL +MNRRH A +Y + Sbjct: 268 PGLLRIRYTTSHPNDMGEDLIAAHRDIPALMPFLHLPVQSGSDKILAAMNRRHKAGDYLE 327 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +I IR+ RPDIA+SSDFIVGFPGET+ DF AT+ L++++G+A AFSFKYS R GTPG++ Sbjct: 328 LIASIRAARPDIALSSDFIVGFPGETEADFEATLALIEQVGFASAFSFKYSQRPGTPGAD 387 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 +Q+DE+VKA+RL LQ L EQ+ +FN A +G+++ VL EK G+ G++ G++P+LQ+ Sbjct: 388 RPDQIDEDVKAQRLARLQALLEEQRQAFNKAMIGRVLPVLFEKPGRHPGQIAGKTPYLQA 447 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + IG + V I + ++ +G L+ Sbjct: 448 LYAEGDKALIGTVQPVEILEAGPNSFHGRLLA 479 >gi|299133384|ref|ZP_07026579.1| RNA modification enzyme, MiaB family [Afipia sp. 1NLS2] gi|298593521|gb|EFI53721.1| RNA modification enzyme, MiaB family [Afipia sp. 1NLS2] Length = 476 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 233/450 (51%), Positives = 319/450 (70%), Gaps = 5/450 (1%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +KSYGCQMNVYD+ RM D +G+ ++ADL++LNTCHIREKA+EKV+S Sbjct: 4 PRKLHIKSYGCQMNVYDAQRMVDTLAPEGFVETADANEADLVILNTCHIREKASEKVFSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R +K +EG ++ + VAGCVAQAEG EI RR+ V+VVVGPQ+Y+ LP+LL +A Sbjct: 64 LGRLRVMKEEAAREGREMKIAVAGCVAQAEGAEITRRASTVDVVVGPQSYHNLPKLLAKA 123 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R G ++T++ ++DKF L R RG+++F+T+QEGCDKFCTFCVVPYTRG+E+ Sbjct: 124 RTGAPTIETEFPIQDKFSSLPAPKPAAIRARGISSFVTVQEGCDKFCTFCVVPYTRGMEV 183 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ +VD+ ++L DNGV EITL+GQNVNA+ G+G G+ + LL+ L+ + G+VRL Sbjct: 184 SRPVAAIVDDVKRLADNGVREITLIGQNVNAYHGEGASGQAWSLGRLLHHLASVPGIVRL 243 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY+TSHPRD+ D LI+AH D+ +MP++HLPVQSGSDRIL +MNR+H A +Y + I+R R Sbjct: 244 RYSTSHPRDVDDSLIEAHRDIPAVMPFVHLPVQSGSDRILAAMNRKHAAADYIRTIERFR 303 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE--- 380 P IA SSDFIVGFPGET+ DF T+ LV +I YA A+SFKYSPR GTP ++M E Sbjct: 304 KASPKIAFSSDFIVGFPGETEQDFSDTLALVTQISYAGAYSFKYSPRPGTPAADMQETDT 363 Query: 381 --QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 V V ERL LQ + QQ SFN A +GQ +EVL E+ +E G++VGR+ +LQ Sbjct: 364 ALAVPAAVMDERLARLQGLIDAQQASFNRAAIGQTVEVLFERAAREPGQIVGRTAYLQPA 423 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG ++ V I ++ +L G L Sbjct: 424 HVMAPADIIGQVLPVTIDSLERYSLKGRLA 453 >gi|157829079|ref|YP_001495321.1| hypothetical protein A1G_06820 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933804|ref|YP_001650593.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia rickettsii str. Iowa] gi|229890634|sp|B0BVC7|MIAB_RICRO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890635|sp|A8GTT8|MIAB_RICRS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|157801560|gb|ABV76813.1| hypothetical protein A1G_06820 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908891|gb|ABY73187.1| tRNA 2-methylthioadenosine synthase [Rickettsia rickettsii str. Iowa] Length = 445 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 238/447 (53%), Positives = 338/447 (75%), Gaps = 7/447 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMNVYDS++M+D+ + GYE ++++AD+I+LNTCHIREKAAEK YS L Sbjct: 3 KKLYIKTYGCQMNVYDSIKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYSEL 62 Query: 85 GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 GRI+ L+++R K+G ++VVAGCVAQAEGEEI R+P V++VVGPQ+YY LPEL+ + Sbjct: 63 GRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K ++D D+ E KF++L + Y +G +AF+++QEGCDKFCTFCVVPYTRG E Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGTSAFISVQEGCDKFCTFCVVPYTRGAE 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR++ QV EA K++ +G EI LLGQNVNA+ GKG + + +DLL L++I L R Sbjct: 179 FSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNLER 238 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LRYTTSHP DM++ LIK +G LMP+LHLPVQSGS++ILK+MNR+H Y II+R+ Sbjct: 239 LRYTTSHPIDMNNDLIKLYGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIINRL 298 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI +SSDFIVGFPGETD+DF T+DLV ++ Y Q +SFKYSPR GTPG+ +Q+ Sbjct: 299 REARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQI 358 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E++K+ERL LQ++L QQ++FN +CVG ++VL +++GK +++G++P++QSV + + Sbjct: 359 PEHIKSERLTILQQELMAQQLAFNTSCVGSTMKVLFDRNGKFDDQIIGKTPYMQSVYIQN 418 Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468 N + +G II V+IT +++L GE++ Sbjct: 419 PNKSLLGKIIDVKITKASLNSLTGEIL 445 >gi|34581161|ref|ZP_00142641.1| hypothetical protein [Rickettsia sibirica 246] gi|28262546|gb|EAA26050.1| unknown [Rickettsia sibirica 246] Length = 445 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 238/447 (53%), Positives = 337/447 (75%), Gaps = 7/447 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMNVYDS++M+D+ + GYE ++++AD+I+LNTCHIREKAAEK YS L Sbjct: 3 KKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYSEL 62 Query: 85 GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 GRI+ L+++R K+G ++VVAGCVAQAEGEEI R+P V++VVGPQ+YY LPEL+ + Sbjct: 63 GRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K ++D D+ E KF++L + Y +G +AF+++QEGCDKFCTFCVVPYTRG E Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGTSAFISVQEGCDKFCTFCVVPYTRGAE 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR++ QV EA K++ +G EI LLGQNVNA+ GKG + + +DLL L++I L R Sbjct: 179 FSRNVEQVFREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNLER 238 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LRYTTSHP DM++ LIK +G LMP+LHLPVQSGS++ILK+MNR+H Y II R+ Sbjct: 239 LRYTTSHPIDMNNDLIKLYGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIIHRL 298 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI +SSDFIVGFPGETD+DF T+DLV ++ Y Q +SFKYSPR GTPG+ +Q+ Sbjct: 299 REARPDIVLSSDFIVGFPGETDEDFEGTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQI 358 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E++K+ERL LQ++L QQ++FN +CVG ++VL +++GK +++G++P++QSV + + Sbjct: 359 PEHIKSERLTILQQELMAQQLAFNTSCVGSTMKVLFDRNGKFDDQIIGKTPYMQSVYIQN 418 Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468 N + +G II V+IT +++L GE++ Sbjct: 419 PNKSLLGKIIDVKITKASLNSLTGEIL 445 >gi|229587170|ref|YP_002845671.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia africae ESF-5] gi|228022220|gb|ACP53928.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia africae ESF-5] Length = 445 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 238/447 (53%), Positives = 338/447 (75%), Gaps = 7/447 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMNVYDS++M+D+ + GYE ++++AD+I+LNTCHIREKAAEK YS L Sbjct: 3 KKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYSEL 62 Query: 85 GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 GRI+ L+++R K+G ++VVAGCVAQAEGEEI R+P V++VVGPQ+YY LPEL+ + Sbjct: 63 GRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K ++D D+ E KF++L + Y +G +AF+++QEGCDKFCTFCVVPYTRG E Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGTSAFISVQEGCDKFCTFCVVPYTRGAE 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR++ QV EA K++ +G EI LLGQNVNA+ GKG + + +DLL L++I L R Sbjct: 179 FSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNLER 238 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LRYTTSHP DM++ LIK +G LMP+LHLPVQSGS++ILK+MNR+H Y II+R+ Sbjct: 239 LRYTTSHPIDMNNDLIKLYGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIINRL 298 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI +SSDFIVGFPGETD+DF T+DLV ++ Y Q +SFKYSPR GTPG+ +Q+ Sbjct: 299 REARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQI 358 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E++K+ERL LQ++L QQ++FN +CVG ++VL +++GK +++G++P++QSV + + Sbjct: 359 PEHIKSERLTILQQELMAQQLAFNTSCVGSTMKVLFDRNGKFDDQIIGKTPYMQSVYIQN 418 Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468 N + +G II V+IT +++L GE++ Sbjct: 419 PNKSLLGKIIDVKITKASLNSLTGEIL 445 >gi|192288883|ref|YP_001989488.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodopseudomonas palustris TIE-1] gi|229890627|sp|B3QAC6|MIAB_RHOPT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|192282632|gb|ACE99012.1| RNA modification enzyme, MiaB family [Rhodopseudomonas palustris TIE-1] Length = 463 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 240/445 (53%), Positives = 328/445 (73%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +KSYGCQMNVYD+ RM D +G+ ++DDADL++LNTCHIREKA+EKVYS Sbjct: 4 PRKLHIKSYGCQMNVYDAQRMVDALAPEGFVETANVDDADLVILNTCHIREKASEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R ++ G + + VAGCVAQAEGEEI+RR+P+V+VVVGPQ+Y+ LP+LL +A Sbjct: 64 LGRLRVARDEAANHGRRMQIAVAGCVAQAEGEEIIRRAPVVDVVVGPQSYHNLPQLLAKA 123 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R ++T++ +EDKF L R RG++AF+T+QEGCDKFCTFCVVPYTRG E+ Sbjct: 124 EQHGRALETEFPIEDKFGVLPQPAPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEM 183 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +V++ ++L +NGV E+TL+GQNVNA+ G G DG + L+ L+EI G+VRL Sbjct: 184 SRPVVAIVEDVKRLAENGVREVTLIGQNVNAYHGDGPDGRAWSLGRLVRRLAEIPGIVRL 243 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY+TSHP D+ D L+ AH DL LMP++HLPVQSGSDRIL +MNR+HTA +YR++IDR R Sbjct: 244 RYSTSHPNDVDDDLLAAHRDLPALMPFVHLPVQSGSDRILAAMNRKHTADDYRRVIDRFR 303 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S IA SSDFIVGFPGET+ DF AT+ LV +IGYA A+SFKYSPR GTP ++M+E V Sbjct: 304 SASETIAFSSDFIVGFPGETERDFSATLALVAQIGYAGAYSFKYSPRPGTPAADMVEMVP 363 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 V ERL LQ+ + +QQ +FN A +G+ +EVL E+ G++ G++VGR+ +LQ + + Sbjct: 364 AAVMDERLEQLQQLIDQQQSAFNKAAIGRTVEVLFERAGRKPGQIVGRTAYLQPAHVMAP 423 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 + IG ++ VR+ ++ +L GEL Sbjct: 424 DSIIGKVLPVRVDSLERYSLLGELA 448 >gi|85709129|ref|ZP_01040195.1| 2-methylthioadenine synthetase [Erythrobacter sp. NAP1] gi|85690663|gb|EAQ30666.1| 2-methylthioadenine synthetase [Erythrobacter sp. NAP1] Length = 455 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 243/463 (52%), Positives = 322/463 (69%), Gaps = 10/463 (2%) Query: 5 IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64 +K VA I+ P+ + VKS+GCQMNVYD RM ++ +G +DADL Sbjct: 1 MKWREVAGKAPPIMKPQTPPKTYRVKSFGCQMNVYDGERMGELLAEKGITPAPEGEDADL 60 Query: 65 IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124 +VLNTCHIREKAAEK+YS +GR+ K ++ VAGCVAQAEGEEI+ R+P V Sbjct: 61 VVLNTCHIREKAAEKIYSDIGRLTKGKTQEKAP----MIAVAGCVAQAEGEEIMARAPAV 116 Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184 ++VVGPQ Y+RLP++L++A G+R DTD KF+ L ++R TAFLT+QE Sbjct: 117 SMVVGPQAYHRLPDMLDKAVAGERATDTDMPAIAKFDSLP-----KRKRRSPTAFLTVQE 171 Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244 GCDKFCT+CVVPYTRG EISR S ++DEARKLI+ G EITLLGQNVNAW G+ G Sbjct: 172 GCDKFCTYCVVPYTRGAEISRPYSDLIDEARKLIEAGAREITLLGQNVNAWSGEDEKGRS 231 Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 L+++L+E+ GL R+RYTTSHP DM D LI+AHG D LMPYLHLPVQSG+DR+LK Sbjct: 232 VGLGQLIHALAELDGLERIRYTTSHPNDMDDALIEAHGTCDKLMPYLHLPVQSGNDRVLK 291 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 +MNR HTA Y ++++R R+VRPDIA+S DFIVGFPGET+ +F T+ LVD++ Y+QAFS Sbjct: 292 AMNRSHTAESYLKLLERFRTVRPDIALSGDFIVGFPGETEAEFEDTLKLVDEVRYSQAFS 351 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 FKYSPR GTP + M Q+ + + ERL LQ +L Q++FN+ VG+ VL+E+ GK Sbjct: 352 FKYSPRPGTPAATMDNQIAKELMDERLQRLQARLNRDQLAFNEGLVGKTCTVLVERKGKH 411 Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 G+ +G+SPWL SV + IGD+++VR+ + +++ G L Sbjct: 412 PGQWLGKSPWLTSVWFEG-DAQIGDLVEVRLVEAGPNSIEGLL 453 >gi|295687475|ref|YP_003591168.1| MiaB family RNA modification enzyme [Caulobacter segnis ATCC 21756] gi|295429378|gb|ADG08550.1| RNA modification enzyme, MiaB family [Caulobacter segnis ATCC 21756] Length = 448 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 255/448 (56%), Positives = 322/448 (71%), Gaps = 13/448 (2%) Query: 23 VPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 PQ R F+K+YGCQMNVYDS RM D+ GY V+ + ADL+VLNTCHIREKA EKVY Sbjct: 4 TPQKRLFIKTYGCQMNVYDSERMADVLRPLGYGVVDDPEGADLVVLNTCHIREKATEKVY 63 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LG I+ +K+ + + GG + + VAGCVAQAEG+EI+ R V++VVGPQ Y++LPEL+ Sbjct: 64 SELGYIKQMKDRKAEAGGRMTIAVAGCVAQAEGKEIMHRQKAVDLVVGPQAYHQLPELIA 123 Query: 142 RAR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 RA G+R+ D++ ++KF+ L GVTAFLT+QEGCDKFCTFCVVPYTR Sbjct: 124 RAHRATGERLA-ADFAADEKFDALP----AERHVTGVTAFLTVQEGCDKFCTFCVVPYTR 178 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR ++ +V+EA++L D GV E+TLLGQNVNA+ DG+ T + L+ L+ I G Sbjct: 179 GGEWSRPVNDIVEEAKRLADQGVREVTLLGQNVNAY-----DGDGSTLAKLVRQLARIDG 233 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+RYTTSHPRDM D LI+AHG+L LMPYLHLPVQ+G DRILK+MNR HTA Y ++I Sbjct: 234 LDRIRYTTSHPRDMGDDLIEAHGELPELMPYLHLPVQAGGDRILKAMNRDHTAESYVRLI 293 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +RIR+ RPDIA+S DFIVGFPGE D DF T+DLV ++G+A AFSFKYS R GTP S M Sbjct: 294 ERIRAARPDIAMSGDFIVGFPGERDGDFEKTLDLVREVGFASAFSFKYSRRPGTPASAMP 353 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 QV+E VKAERL L + L EQQ +FN A VG+++ VL EK G+ G++VGRSP+LQ+V Sbjct: 354 GQVEEEVKAERLERLNQLLDEQQRAFNAAQVGKVLPVLFEKPGRHAGQIVGRSPYLQAVH 413 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467 IG I+ VRI +L G L Sbjct: 414 CEGGEQLIGKIVPVRIESAAKMSLGGAL 441 >gi|217979028|ref|YP_002363175.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Methylocella silvestris BL2] gi|217504404|gb|ACK51813.1| RNA modification enzyme, MiaB family [Methylocella silvestris BL2] Length = 490 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 245/444 (55%), Positives = 319/444 (71%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FV+S+GCQMNVYDS +M D+ +GY +DADLI+LNTCHIRE+A+EK++S L Sbjct: 28 RKLFVQSFGCQMNVYDSQKMTDLLGREGYGAAAGPEDADLIILNTCHIRERASEKIFSEL 87 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R LK R EG +VVAGCVAQAEG EI RR V+VVVGPQ+Y+RLPELL RA Sbjct: 88 GRLRELKALRAVEGRKTKIVVAGCVAQAEGAEIHRRQSAVDVVVGPQSYHRLPELLRRAE 147 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K VVDTD+ VEDKF L+ RKRGV+AF+T+QEGCDKFCTFCVVPYTRG E S Sbjct: 148 REKHVVDTDFPVEDKFGFLARPTPAETRKRGVSAFVTVQEGCDKFCTFCVVPYTRGAEFS 207 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ +++EA L GV E+TL+GQNVNA+ G G + + L L+ G+ R+R Sbjct: 208 RPVAAILEEAAALTAAGVRELTLIGQNVNAYHGADGRGGEADLAALCAELARASGVKRIR 267 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHP DM + LI+AH LMP+LHLPVQSGSD +L +MNR+HT+ Y + RIR+ Sbjct: 268 YTTSHPNDMGEALIEAHRAQPKLMPFLHLPVQSGSDAVLAAMNRKHTSAGYIALCRRIRA 327 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIA+SSDFIVGFPGETD DF AT+ L++ +GYA AFSFKYSPR GTPG+ +Q+ E Sbjct: 328 ARPDIALSSDFIVGFPGETDADFEATLQLIEDVGYASAFSFKYSPRPGTPGAERTDQIAE 387 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +VK+ERL LQ + Q+ +FN A VG+ +EVLIE+ G+ G++ G+SP+LQ+V L + Sbjct: 388 DVKSERLARLQALIESQRQAFNRAMVGRTVEVLIERRGRHPGQIAGKSPYLQAVQLEGGD 447 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG+ + V I ++L+G+L Sbjct: 448 ELIGESVAVEIVATGPNSLFGKLA 471 >gi|238650870|ref|YP_002916725.1| tRNA 2-methylthioadenosine synthase [Rickettsia peacockii str. Rustic] gi|238624968|gb|ACR47674.1| tRNA 2-methylthioadenosine synthase [Rickettsia peacockii str. Rustic] Length = 445 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 238/447 (53%), Positives = 337/447 (75%), Gaps = 7/447 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMNVYDS++M+D+ + GYE ++++AD+I+LNTCHIREKAAEK YS L Sbjct: 3 KKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYSEL 62 Query: 85 GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 GRI+ L+++R K+G ++VVAGCVAQAEGEEI R+P V++VVGPQ+YY LPEL+ + Sbjct: 63 GRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K ++D D+ E KF++L + Y +G +AF+++QEGCDKFCTFCVVPYTRG E Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGTSAFISVQEGCDKFCTFCVVPYTRGAE 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR++ QV EA K++ +G EI LLGQNVNA+ GKG + + +DLL L++I L R Sbjct: 179 FSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNLER 238 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LRYTTSHP DM++ LIK +G LMP+LHLPVQSGS++ILK+MNR+H Y II+R+ Sbjct: 239 LRYTTSHPIDMNNDLIKLYGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIINRL 298 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI +SSDFIVGFPGETD+DF T+DLV ++ Y Q +SFKYSPR GTPG+ +Q+ Sbjct: 299 REARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQI 358 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E++K+ERL LQ++L QQ++FN +CVG ++VL +++GK +++G++P++QSV + + Sbjct: 359 PEHIKSERLTILQQELMAQQLAFNTSCVGSTMKVLFDRNGKFDDQIIGKTPYMQSVYIQN 418 Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468 N + +G II V IT +++L GE++ Sbjct: 419 PNKSLLGKIIDVNITKASLNSLTGEIL 445 >gi|86136015|ref|ZP_01054594.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. MED193] gi|85826889|gb|EAQ47085.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. MED193] Length = 455 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 246/446 (55%), Positives = 324/446 (72%), Gaps = 9/446 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ F+K+YGCQMNVYDS RM + QGY V S D+AD+I+LNTCHIREKAAEKVYS Sbjct: 18 APKKLFIKTYGCQMNVYDSERMAEALGGQGYSEVKSADEADMILLNTCHIREKAAEKVYS 77 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR + LK E DL + VAGCVAQAEG+EI+RR P+V++VVGPQ+Y+RLPE+ E+ Sbjct: 78 ELGRFKKLK----AEKPDLKIGVAGCVAQAEGQEIMRRQPLVDLVVGPQSYHRLPEMEEK 133 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 AR G++V+DTD+ EDKFE+L RG TAFLT+QEGCDKFC FCVVPYTRG E Sbjct: 134 ARAGEKVLDTDFPEEDKFEKLKRRPKA---TRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 190 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR +++ EAR L++ GV EITLLGQNVNA+ G G +G+ T + L++ L ++ GL R Sbjct: 191 VSRPADRILTEARDLVERGVREITLLGQNVNAYHGAGANGD-LTLAQLIWELDKVDGLER 249 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP DM D LI+AHG LMPYLHLPVQ+GSD+ILK MNR HTA Y ++I+RI Sbjct: 250 IRFTTSHPNDMMDDLIEAHGTCKKLMPYLHLPVQAGSDKILKRMNRSHTAESYLRLIERI 309 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPDI IS DFIVGFP ET++DF+AT+DLV+++ Y A+SFKYS R GTP + QV Sbjct: 310 RAARPDILISGDFIVGFPEETEEDFQATLDLVEEVKYGTAYSFKYSTRPGTPAAER-PQV 368 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 + +RL LQ L QQ D+ VG+ + VL EK G++ G+++G+S +L +V + Sbjct: 369 NPAEADDRLQRLQALLTRQQREIQDSMVGREVGVLFEKPGRQPGQMLGKSDYLHAVHVAD 428 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 + GD+ +VRI + ++L GEL+ Sbjct: 429 CDRKAGDLARVRIVSSRTNSLAGELI 454 >gi|260431178|ref|ZP_05785149.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Silicibacter lacuscaerulensis ITI-1157] gi|260415006|gb|EEX08265.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Silicibacter lacuscaerulensis ITI-1157] Length = 439 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 249/448 (55%), Positives = 324/448 (72%), Gaps = 15/448 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ ++K+YGCQMNVYDS RM + QGY S +DAD+I+LNTCHIREKAAEKVYS Sbjct: 4 PKKLYIKTYGCQMNVYDSERMSEALGGQGYVETQSPEDADMILLNTCHIREKAAEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK E DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL +A Sbjct: 64 LGRFKGLK----AEKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPELEAKA 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R G++ +DTD+ EDKFE+L NR KRG TAFLT+QEGCDKFC FCVVPYTRG Sbjct: 120 RAGEKALDTDFPEEDKFEKLK------NRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRG 173 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E+SR +++ EA+ L++ GV EITLLGQNVNA+ G G +G+ T + L++ L+ I GL Sbjct: 174 AEVSRPADRILREAQDLVERGVREITLLGQNVNAYHGAGPNGD-MTLAGLIWELNRIDGL 232 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP DM+D LI+AHG + LMPYLHLPVQSGSDRILK MNR HTA Y ++I+ Sbjct: 233 ERIRFTTSHPNDMTDDLIEAHGTCEKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLIE 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR RPDI +S DFIVGFP ET++DF+AT+DLV+++ Y A+SFKYS R GTP + Sbjct: 293 RIREARPDILMSGDFIVGFPEETEEDFQATLDLVEEVRYGYAYSFKYSTRPGTPAAER-P 351 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 QVD +RL LQ + Q DA VG+ ++VL EK G+ G++VG+S +L +V + Sbjct: 352 QVDPQAADDRLQRLQAVITRHQREIQDAMVGRTVKVLFEKPGRLPGQMVGKSEYLHAVHV 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ GD+ VR+T ++L GEL+ Sbjct: 412 KAEGLGAGDLRSVRVTASGANSLAGELI 439 >gi|221232993|ref|YP_002515429.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Caulobacter crescentus NA1000] gi|220962165|gb|ACL93521.1| tRNA 2-methylthioadenosine synthase [Caulobacter crescentus NA1000] Length = 448 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 252/448 (56%), Positives = 323/448 (72%), Gaps = 13/448 (2%) Query: 23 VPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 PQ R F+K+YGCQMNVYDS RM D+ GY V+ + ADL+VLNTCHIREKA EKVY Sbjct: 4 TPQKRLFIKTYGCQMNVYDSERMADVLRPLGYGVVDEPEGADLVVLNTCHIREKATEKVY 63 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LG I+ +K+ + + GG + + VAGCVAQAEG+EI+ R V++VVGPQ Y++LPEL+ Sbjct: 64 SELGYIKQMKDRKAEAGGRMTIAVAGCVAQAEGKEIMNRQKAVDLVVGPQAYHQLPELIA 123 Query: 142 RAR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 RA G+R+ D++ ++KF+ L GVTAFLT+QEGCDKFCTFCVVPYTR Sbjct: 124 RAHRATGERLA-ADFAADEKFDALP----AERHVTGVTAFLTVQEGCDKFCTFCVVPYTR 178 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR ++ +V+EA++L D GV E+TLLGQNVNA+ DG+ T + L+ L++I G Sbjct: 179 GGEWSRPVNDIVEEAKRLADQGVREVTLLGQNVNAY-----DGDGSTLAKLVRQLAKIDG 233 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+RYTTSHPRDM D LI+AHG+L LMPYLHLPVQ+GSD+ILK+MNR HTA Y ++I Sbjct: 234 LDRIRYTTSHPRDMGDDLIEAHGELPELMPYLHLPVQAGSDKILKAMNRDHTAESYVKLI 293 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++IR+ RPDIA+S DFIVGFPGE D DF T++LV ++G+A AFSFKYS R GTP S M Sbjct: 294 EKIRAARPDIAMSGDFIVGFPGERDGDFEKTLELVREVGFASAFSFKYSRRPGTPASAMP 353 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 QVDE VKAERL L + L EQQ +FN + VG+++ VL EK G+ G++VGRSP+LQ+V Sbjct: 354 GQVDEAVKAERLERLNQLLDEQQRAFNASQVGKVLPVLFEKAGRHPGQIVGRSPYLQAVH 413 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467 IG I+ V I +L G L Sbjct: 414 AEGGEQLIGTIVPVHIESAAKMSLAGRL 441 >gi|157964955|ref|YP_001499779.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia massiliae MTU5] gi|229890633|sp|A8F2U6|MIAB_RICM5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|157844731|gb|ABV85232.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia massiliae MTU5] Length = 450 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 236/451 (52%), Positives = 339/451 (75%), Gaps = 7/451 (1%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 ++ ++ ++K+YGCQMNVYDS++M+D+ + GYE ++++A +I+LNTCHIREKAAEK Y Sbjct: 1 MMSKKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEAAVIILNTCHIREKAAEKTY 60 Query: 82 SFLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 S LGRI+ L+++R K+G ++VVAGCVAQAEGEEI R+P V++VVGPQ+YY LPEL+ Sbjct: 61 SELGRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELI 120 Query: 141 ERA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + R K ++D D+ E KF++L + Y +G +AF+++QEGCDKFCTFCVVPYTR Sbjct: 121 SKVVRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGTSAFISVQEGCDKFCTFCVVPYTR 176 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR++ QV EA K++ +G EI LLGQNVNA+ GKG + + +DLL L++I Sbjct: 177 GAEFSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPN 236 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L RLRY TSHP DM+D LIK HG LMP+LHLPVQSGS++ILK+MNR+H Y II Sbjct: 237 LERLRYITSHPIDMNDDLIKLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDII 296 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +R+R RP I +SSDFIVGFPGETD+DF T+DLV ++ Y Q +SFKYSPR GTPG+ Sbjct: 297 NRLREARPAIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATKT 356 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 +Q+ E++K+ERL LQ++L QQ++FN++CVG ++VL +++GK +++G++P++QSV Sbjct: 357 DQIPEHIKSERLTILQQELMAQQLAFNESCVGSTMKVLFDRNGKCDDQIIGKTPYMQSVY 416 Query: 440 LNSKNHN-IGDIIKVRITDVKISTLYGELVV 469 + + N + +G I+ ++IT +++L GE++V Sbjct: 417 IQNPNKSLLGKIVDIKITKASLNSLTGEILV 447 >gi|258542174|ref|YP_003187607.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acetobacter pasteurianus IFO 3283-01] gi|256633252|dbj|BAH99227.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus IFO 3283-01] gi|256636311|dbj|BAI02280.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus IFO 3283-03] gi|256639364|dbj|BAI05326.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus IFO 3283-07] gi|256642420|dbj|BAI08375.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus IFO 3283-22] gi|256645475|dbj|BAI11423.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus IFO 3283-26] gi|256648528|dbj|BAI14469.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus IFO 3283-32] gi|256651581|dbj|BAI17515.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654572|dbj|BAI20499.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus IFO 3283-12] Length = 472 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 246/442 (55%), Positives = 315/442 (71%), Gaps = 2/442 (0%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 V ++GCQMNVYDS RM D+ GY+ V + D AD+I+LNTCHIR+KAAEKV+S LGR Sbjct: 25 LHVITWGCQMNVYDSARMGDVLRPLGYQPVATPDTADMIILNTCHIRDKAAEKVFSELGR 84 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R +K +R G ++ VAGCVAQAEG+EIL R+P V++V+GPQTY+RLPE++ RA Sbjct: 85 LRKIKEARETSGQHTIIAVAGCVAQAEGQEILARAPYVDIVLGPQTYHRLPEMVARAARA 144 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++TD+ E KF+ L + TAFLTIQEGCDKFC+FCVVPYTRG E SR Sbjct: 145 GGAVIETDFPAEQKFDFLPEAEAPQTAGN-YTAFLTIQEGCDKFCSFCVVPYTRGAESSR 203 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S+ V+ EAR+++++GV +I LLGQNVNA+ G+G DG L Y L+++ GL R+RY Sbjct: 204 SVLSVLAEARRMVESGVKDICLLGQNVNAYHGEGPDGSTWDLPQLAYELAKLPGLSRIRY 263 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TSHPRDM+D LI AH DL LMP+LHLPVQ+GSDRIL++MNR HTA EYR I+ R+R Sbjct: 264 MTSHPRDMNDALIAAHRDLPQLMPFLHLPVQAGSDRILRAMNRGHTADEYRDIVRRLREA 323 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RPD+A+SSDFIVG PGETD+DF ATM LV +G+A A+SFKYSPR GTP + QV E+ Sbjct: 324 RPDLALSSDFIVGHPGETDEDFEATMQLVRDVGFALAYSFKYSPRPGTPAAGAGMQVPED 383 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 VK RL LQ LREQQ +FN VG+ I VL G++ G++ GRSPWLQ V ++ H Sbjct: 384 VKDARLQALQALLREQQDAFNATLVGKTIPVLFTSEGRKPGQIAGRSPWLQPVHVSGPKH 443 Query: 446 NIGDIIKVRITDVKISTLYGEL 467 IG + VRI + ++L G L Sbjct: 444 LIGKELPVRIVERLTNSLSGVL 465 >gi|15893169|ref|NP_360883.1| hypothetical protein RC1246 [Rickettsia conorii str. Malish 7] gi|81527850|sp|Q92G77|MIAB_RICCN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|15620380|gb|AAL03784.1| unknown [Rickettsia conorii str. Malish 7] Length = 445 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 237/447 (53%), Positives = 337/447 (75%), Gaps = 7/447 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMNVYDS++M+D+ + GYE ++++AD+I+LNTCHIREKAAEK YS L Sbjct: 3 KKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYSEL 62 Query: 85 GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 GRI+ L+++R K+G ++VVAGCVAQAEGEEI R+P V++VVGPQ+YY LPEL+ + Sbjct: 63 GRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K ++D D+ E KF++L + Y +G +AF+++QEGCDKFCTFCVVPYTRG E Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGTSAFISVQEGCDKFCTFCVVPYTRGAE 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR++ QV EA K++ +G EI LLGQNVNA+ GKG + + +DLL L++I L R Sbjct: 179 FSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNLER 238 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LRYTTSHP DM++ LIK +G LMP+LHLPVQSGS++ILK+MNR+H Y II+R+ Sbjct: 239 LRYTTSHPIDMNNDLIKLYGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIINRL 298 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI +SSDFIVGFPGETD+DF T+DLV ++ Y Q +SFKYSPR GTPG+ +Q+ Sbjct: 299 REARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQI 358 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E++K+ERL LQ++L QQ++FN +CVG ++VL +++GK +++G++P++QSV + + Sbjct: 359 PEHIKSERLTILQQELMAQQLAFNTSCVGSTMKVLFDRNGKFDDQIIGKTPYMQSVYIQN 418 Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468 N + +G I V+IT +++L GE++ Sbjct: 419 PNKSLLGKISDVKITKASLNSLTGEIL 445 >gi|91204926|ref|YP_537281.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia bellii RML369-C] gi|122426084|sp|Q1RKC2|MIAB_RICBR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|91068470|gb|ABE04192.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia bellii RML369-C] Length = 446 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 239/446 (53%), Positives = 334/446 (74%), Gaps = 7/446 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMNVYDS++M+D+ + GYE ++++AD+I+LNTCHIREKAAEK YS L Sbjct: 3 KKLYIKTYGCQMNVYDSVKMQDLLYPYGYEPTENIEEADVIILNTCHIREKAAEKTYSEL 62 Query: 85 GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 GRI+ L+++R K+G ++VVAGCVAQAEGEEI R+P V++VVGPQ+YY LPEL+ + Sbjct: 63 GRIKKLQDARKKQGLNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K ++D D+ E KF++L + Y +G ++F+++QEGCDKFCTFCVVPYTRG E Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGASSFISVQEGCDKFCTFCVVPYTRGAE 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR++ QV EA K++ +G EI LLGQNVNA+ GK D + T +DL+ L +I L R Sbjct: 179 FSRNVEQVYREALKIVSSGAKEIMLLGQNVNAYHGKTSDDKVFTLADLIRHLVKIPNLER 238 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LRYTTSHP DM+D LI HG LMP+LHLPVQSGS++ LK+MNR+H Y IIDR+ Sbjct: 239 LRYTTSHPIDMTDDLISLHGLEPKLMPFLHLPVQSGSNKTLKAMNRKHDRDYYFDIIDRL 298 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R R DI +SSDFIVGFPGETD+DF T+DLV K+ Y Q +SFKYSPR GTPG+ +QV Sbjct: 299 RKARADIVLSSDFIVGFPGETDEDFADTLDLVRKVKYGQCYSFKYSPRPGTPGATRTDQV 358 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E++K+ERL LQK+L QQ++FN++C+G ++VL ++ GK +++G++P++QSV + + Sbjct: 359 PEHIKSERLTILQKELAAQQLAFNESCIGSTMKVLFDRDGKFDDQIIGKTPYMQSVYIKN 418 Query: 443 KNHN-IGDIIKVRITDVKISTLYGEL 467 N + +G II+V+IT +++L GE+ Sbjct: 419 PNKDLLGKIIEVKITKAALNSLSGEI 444 >gi|157827747|ref|YP_001496811.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia bellii OSU 85-389] gi|229890631|sp|A8GY24|MIAB_RICB8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|157803051|gb|ABV79774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia bellii OSU 85-389] Length = 446 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 239/446 (53%), Positives = 334/446 (74%), Gaps = 7/446 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMNVYDS++M+D+ + GYE ++++AD+I+LNTCHIREKAAEK YS L Sbjct: 3 KKLYIKTYGCQMNVYDSVKMQDLLYPYGYEPTENIEEADVIILNTCHIREKAAEKTYSEL 62 Query: 85 GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 GRI+ L+++R K+G ++VVAGCVAQAEGEEI R+P V++VVGPQ+YY LPEL+ + Sbjct: 63 GRIKKLQDARKKQGLNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K ++D D+ E KF++L + Y +G ++F+++QEGCDKFCTFCVVPYTRG E Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLP--EQLY--PQGASSFISVQEGCDKFCTFCVVPYTRGAE 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR++ QV EA K++ +G EI LLGQNVNA+ GK D + T +DL+ L +I L R Sbjct: 179 FSRNVEQVYREALKVVSSGAKEIMLLGQNVNAYHGKTSDDKVFTLADLIRHLVKIPNLER 238 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LRYTTSHP DM+D LI HG LMP+LHLPVQSGS++ LK+MNR+H Y IIDR+ Sbjct: 239 LRYTTSHPIDMTDDLISLHGLEPKLMPFLHLPVQSGSNKTLKAMNRKHDRDYYFDIIDRL 298 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R R DI +SSDFIVGFPGETD+DF T+DLV K+ Y Q +SFKYSPR GTPG+ +QV Sbjct: 299 RKARADIVLSSDFIVGFPGETDEDFADTLDLVRKVKYGQCYSFKYSPRPGTPGATRTDQV 358 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E++K+ERL LQK+L QQ++FN++C+G ++VL ++ GK +++G++P++QSV + + Sbjct: 359 PEHIKSERLTILQKELAAQQLAFNESCIGSTMKVLFDRDGKFDDQIIGKTPYMQSVYIKN 418 Query: 443 KNHN-IGDIIKVRITDVKISTLYGEL 467 N + +G II+V+IT +++L GE+ Sbjct: 419 PNKDLLGKIIEVKITKAALNSLSGEI 444 >gi|83944995|ref|ZP_00957361.1| hypothetical protein OA2633_10209 [Oceanicaulis alexandrii HTCC2633] gi|83851777|gb|EAP89632.1| hypothetical protein OA2633_10209 [Oceanicaulis alexandrii HTCC2633] Length = 468 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 248/450 (55%), Positives = 313/450 (69%), Gaps = 8/450 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R F+K+YGCQMNVYDS RM D+ GYE + D ADL++LNTCHIREKAAEKVYS L Sbjct: 16 KRLFIKTYGCQMNVYDSERMRDVLAPLGYEPADEPDGADLVILNTCHIREKAAEKVYSEL 75 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143 GR++ LK + G + + VAGCVAQAEG EI RR+P+V++VVGPQTY++LPEL+ Sbjct: 76 GRLKTLKEEKASTGKPMTITVAGCVAQAEGAEIQRRAPVVDLVVGPQTYHKLPELIANVH 135 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R +DT++ VE+KF+ L+ + + G TAF+T+QEGCDKFCTFCVVPYTRG E Sbjct: 136 RERGEALDTEFEVEEKFDALATPERHVD---GFTAFVTVQEGCDKFCTFCVVPYTRGAEW 192 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKG 259 SR + Q+V E R L GV E+TLLGQNVNA+ G+ G+ L+ L++I G Sbjct: 193 SRPVDQIVAEVRALAAKGVREVTLLGQNVNAFHGEAPKGDPEGGVWGLGRLVRHLAKIGG 252 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+TTSHP+DM D LI+A D LMPY HLPVQ+GSD+ILKSMNR HTA EY II Sbjct: 253 IERIRFTTSHPKDMDDDLIQAFADEPKLMPYFHLPVQAGSDKILKSMNRSHTAAEYLDII 312 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R+R+ RPDIAIS D IVGFPGET+ DF ATM+LV ++ YA FSFKYS R GTPG+ M Sbjct: 313 ARLRAARPDIAISGDMIVGFPGETEADFEATMELVRQVNYASCFSFKYSKRPGTPGAAMF 372 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 Q+DE VK ERL LQ L EQQV+FN + +G+ + VL E+ G+ +G+L GRSP+LQ+V Sbjct: 373 NQIDETVKGERLARLQALLTEQQVAFNQSMIGKTLPVLFEREGRFEGQLSGRSPYLQAVH 432 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 IG I V IT + L G L Sbjct: 433 CEGPVELIGQIANVEITGATKNALSGRLAT 462 >gi|254467232|ref|ZP_05080643.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium Y4I] gi|206688140|gb|EDZ48622.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium Y4I] Length = 440 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 249/449 (55%), Positives = 323/449 (71%), Gaps = 15/449 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ F+K+YGCQMNVYDS RM + +GY S DDAD+I+LNTCHIREKAAEKVYS Sbjct: 3 APKKLFIKTYGCQMNVYDSERMAEALGGEGYVETKSADDADMILLNTCHIREKAAEKVYS 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR + LK + DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+ + Sbjct: 63 ELGRFKGLKAQKP----DLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAK 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTR 199 R G++V+DTD+ EDKFE+L NR KRG TAFLT+QEGCDKFC FCVVPYTR Sbjct: 119 TRAGQKVLDTDFPEEDKFEKLK------NRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTR 172 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E+SR +++ EA+ L++ GV EITLLGQNVNA+ G G +G+ T + L++ L +I G Sbjct: 173 GAEVSRPADRILREAQDLVERGVREITLLGQNVNAYHGAGPNGD-LTLAQLIWELDKIDG 231 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+TTSHP DM D LI+AHG LMPYLHLPVQ+GSD+ILK MNR HTA Y ++I Sbjct: 232 LERIRFTTSHPNDMQDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRSHTAESYIRLI 291 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +RIR+ RPDI IS DFIVGFP ET++DF+ATMDLV+++ Y A+SFKYS R GTP + Sbjct: 292 ERIRAARPDILISGDFIVGFPEETEEDFQATMDLVEEVKYGTAYSFKYSTRPGTPAAERA 351 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 QVD +RL LQ L QQ D+ VG+ + VL EK G+ G++VG+S +L +V Sbjct: 352 -QVDPAAADDRLQRLQALLTRQQREVQDSMVGREVGVLFEKPGRLPGQMVGKSDYLHAVH 410 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + N + G++ +VRI ++L GEL+ Sbjct: 411 VADCNRDAGELARVRIVSSGANSLAGELI 439 >gi|126736946|ref|ZP_01752681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. SK209-2-6] gi|126721531|gb|EBA18234.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. SK209-2-6] Length = 440 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 249/446 (55%), Positives = 322/446 (72%), Gaps = 9/446 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ F+K+YGCQMNVYDS RM + +GY S DDAD+I+LNTCHIREKAAEKVYS Sbjct: 3 APKKLFIKTYGCQMNVYDSERMAEALGGEGYVETKSADDADMILLNTCHIREKAAEKVYS 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR + LK E DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+ + Sbjct: 63 ELGRFKGLK----AEKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAK 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 AR G++V+DTD+ EDKFE+L KRG TAFLT+QEGCDKFC FCVVPYTRG E Sbjct: 119 AREGEKVLDTDFPEEDKFEKLK---SRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR +++ EA++L++ GV EITLLGQNVNA+ G G +G+ T + L++ L +I GL R Sbjct: 176 VSRPADRILREAQELVERGVREITLLGQNVNAYHGAGANGD-LTLAQLIWELDKIDGLER 234 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP DM D LI+AHG LMPYLHLPVQ+GSD+ILK MNR HTA Y ++I+RI Sbjct: 235 IRFTTSHPNDMQDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRSHTAESYIRLIERI 294 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPDI IS DFIVGFP ET++DF+ATMDLV+++ Y A+SFKYS R GTP + QV Sbjct: 295 RAARPDILISGDFIVGFPEETEEDFQATMDLVEEVKYGTAYSFKYSTRPGTPAAERA-QV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 D +RL LQ L QQ ++ VG+ + VL EK G+ G++VG+S +L +V + Sbjct: 354 DPAAADDRLQRLQALLGRQQREVQESMVGREVSVLFEKTGRLPGQMVGKSDYLHAVHVAD 413 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG++ KVRI ++L GEL+ Sbjct: 414 CPREIGELAKVRIVSSGPNSLAGELL 439 >gi|159043568|ref|YP_001532362.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dinoroseobacter shibae DFL 12] gi|229890517|sp|A8LSE7|MIAB_DINSH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|157911328|gb|ABV92761.1| RNA modification enzyme [Dinoroseobacter shibae DFL 12] Length = 437 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 251/448 (56%), Positives = 316/448 (70%), Gaps = 17/448 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ ++K+YGCQMNVYDS RM + +GY + + +DAD+I+LNTCHIREKAAEKVYS Sbjct: 4 PKKLYIKTYGCQMNVYDSERMAEAMGGEGYVQTDRAEDADMILLNTCHIREKAAEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK E DL + VAGCVAQAEG EI+RR P+V++VVGPQ Y+RLPEL RA Sbjct: 64 LGRFKPLK----AEKPDLKIGVAGCVAQAEGAEIMRRQPLVDLVVGPQAYHRLPELTARA 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G + +DTD+ EDKF+ L+ KRG TAFLT+QEGCDKFC FCVVPYTRG E+ Sbjct: 120 ATGAKALDTDFPEEDKFDHLAARP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLV 261 SR ++V+ EAR L++ GV EITLLGQNVNA+ G +GL G L++ L+EI GL Sbjct: 177 SRPAARVLTEARDLVERGVREITLLGQNVNAYHGHARGLAG-------LIWDLAEIDGLE 229 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP DM D LI AHG D LMPYLHLPVQSGSDRILK+MNR+HTA Y ++I+R Sbjct: 230 RIRFTTSHPNDMDDALIAAHGACDKLMPYLHLPVQSGSDRILKAMNRKHTAESYIRLIER 289 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ RPDI +S DFIVGFPGETD DF TM LV+ +GY QA+SFKYS R GTP + E Sbjct: 290 IRAARPDILLSGDFIVGFPGETDQDFADTMALVEAVGYGQAYSFKYSARPGTPAAEK-ED 348 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V V RL LQ L QQ + DA VG VL EK G+ G++VG+S L +V + Sbjct: 349 VPGEVADARLQTLQALLTRQQRAIQDAKVGTTARVLFEKPGRLPGQMVGKSEHLHAVHVA 408 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469 + + GD+++VRI + ++L G L+ Sbjct: 409 APDAARGDLVRVRIAESSANSLRGVLIA 436 >gi|167643994|ref|YP_001681657.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Caulobacter sp. K31] gi|229890472|sp|B0T155|MIAB_CAUSK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|167346424|gb|ABZ69159.1| RNA modification enzyme, MiaB family [Caulobacter sp. K31] Length = 450 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 255/447 (57%), Positives = 318/447 (71%), Gaps = 11/447 (2%) Query: 23 VPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 PQ R ++K+YGCQMNVYDS RM D+ GY V+ + ADL+VLNTCHIREKA EKVY Sbjct: 4 TPQKRLYIKTYGCQMNVYDSERMADVLRPLGYGIVDEPEGADLVVLNTCHIREKATEKVY 63 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LG I+ +K + + GG + V VAGCVAQAEG+EI+RR P V++VVGPQ Y++LPEL+ Sbjct: 64 SELGYIKQMKGRKAEAGGQMTVAVAGCVAQAEGQEIMRRQPAVDLVVGPQAYHQLPELIA 123 Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 RA R + D++ ++KF+ L + GV+AFLT+QEGCDKFCTFCVVPYTRG Sbjct: 124 RAHRATGERLSADFAADEKFDALP----AERQVSGVSAFLTVQEGCDKFCTFCVVPYTRG 179 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR Q+ DEAR+L D GV E+TLLGQNVNA+ G G T + L+ L++I GL Sbjct: 180 GEWSRPPEQIEDEARRLADQGVREVTLLGQNVNAYDGGGY-----TLARLVRRLAKIPGL 234 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHPRDM D LI+AHG+L LMPYLHLPVQ+GSD+ILK+MNR HTA Y ++I+ Sbjct: 235 DRIRYTTSHPRDMGDDLIEAHGELPELMPYLHLPVQAGSDKILKAMNRDHTAESYIRLIE 294 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +IR RPDIA+S DFIVGFPGE D DF T+DLV ++G+A AFSFKYS R GTP S M Sbjct: 295 KIRQARPDIAMSGDFIVGFPGERDGDFEKTLDLVREVGFASAFSFKYSRRPGTPASAMPG 354 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 QVDE VKAERL L + L EQQ +FN VG+ + VL EK G+ G++VGRSP+LQ+V Sbjct: 355 QVDEAVKAERLERLNQLLDEQQKAFNILQVGKTMPVLFEKKGRNPGQIVGRSPYLQAVHA 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467 +G I+ VRI +L G L Sbjct: 415 VGSEDLLGQIVPVRIESSAKMSLGGVL 441 >gi|288959688|ref|YP_003450029.1| bifunctional enzyme involved in thiolation and methylation of tRNA [Azospirillum sp. B510] gi|288911996|dbj|BAI73485.1| bifunctional enzyme involved in thiolation and methylation of tRNA [Azospirillum sp. B510] Length = 456 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 239/432 (55%), Positives = 313/432 (72%), Gaps = 6/432 (1%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNVYDS RM D+ GY+ V+ D AD+++LNTCHIREKAAEKV+S LGR+R +K+ + Sbjct: 1 MNVYDSARMADVLAPLGYQPVDEPDGADMVILNTCHIREKAAEKVFSELGRLRQMKDRKA 60 Query: 96 K-EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-RFGKRVVDTD 153 + E G +++ VAGCVAQAEGEEI+ R+P V++V GPQTY+ LPE++ +A R V++TD Sbjct: 61 EAEDGRMILAVAGCVAQAEGEEIVARAPFVDMVFGPQTYHTLPEMVAKASRAAGSVLNTD 120 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + E KF+ L G +GV+AFL +QEGCDKFCTFCVVPYTRG E SR Q++ E Sbjct: 121 FPAESKFDLLPEEAG----SQGVSAFLAVQEGCDKFCTFCVVPYTRGAEFSRPAGQILAE 176 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 A++L+ G EITLLGQNVNAW G G DG L+ L+EI GL R+RYTTSHPRDM Sbjct: 177 AKRLVAGGTREITLLGQNVNAWHGDGPDGATWGLGRLIRQLAEIDGLERIRYTTSHPRDM 236 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D LI+AH ++ LMPYLHLPVQ+GSDRIL +MNR+H+A +YR+++DR+R +PD+A+S Sbjct: 237 ADDLIRAHAEVPQLMPYLHLPVQAGSDRILAAMNRKHSADDYRRLVDRLRDAKPDLAMSG 296 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFIVGFPGE+D DF AT+ LV IGYAQA+SFKYSPR GTP S QV + VK RL Sbjct: 297 DFIVGFPGESDADFAATLKLVTDIGYAQAYSFKYSPRPGTPASVEGSQVPDEVKESRLAA 356 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453 L + L QQV+FN VG+ + VL ++ G+ G+L+GRSPW+QSV + +G I++V Sbjct: 357 LHQLLNAQQVAFNHGFVGRSVPVLFDRVGRRGGQLLGRSPWMQSVHAEANERLLGRIVEV 416 Query: 454 RITDVKISTLYG 465 RI ++L G Sbjct: 417 RIGAALPNSLAG 428 >gi|50593428|gb|AAT79459.1| putative miaB protein [Agrobacterium luteum] Length = 445 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 237/443 (53%), Positives = 316/443 (71%), Gaps = 10/443 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F +KS+GCQMNVYD RM ++ QG + ++ADL+VLNTCHIREKA +KVYS + Sbjct: 7 KKFHIKSFGCQMNVYDGERMSELLVDQGMSAAENDEEADLVVLNTCHIREKAVDKVYSDI 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R K+G ++ VAGCVAQAEG+EI RR+P V++VVGPQ Y+RLPEL+E A+ Sbjct: 67 GRLRR------KDGTSPMIAVAGCVAQAEGKEISRRAPSVDIVVGPQAYHRLPELMETAK 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 GK+ +DTD KF+ L ++ TAFLT+QEGCDKFCT+CVVPYTRG EIS Sbjct: 121 SGKKALDTDMPAISKFDILP----SRGKQARPTAFLTVQEGCDKFCTYCVVPYTRGAEIS 176 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + +VDEA+ L+D G EITLLGQNVNAW G+ G L+ +L +I GL R+R Sbjct: 177 RPWADLVDEAKALVDGGAREITLLGQNVNAWTGEDEKGNHQGLDGLIRALDKISGLKRIR 236 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y TSHP DM++ LI AHGD+ LMP+LHLPVQSGSDRILK+MNR H+ Y I++++R Sbjct: 237 YMTSHPNDMTEGLIAAHGDVGKLMPFLHLPVQSGSDRILKAMNRSHSVQSYLAILEKMRE 296 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +RPDIA+S DFIVGFPGETD DF T+ +V Y+QAFSFKYSPR GTP + M +Q+ Sbjct: 297 LRPDIALSGDFIVGFPGETDQDFEETLQIVRDANYSQAFSFKYSPRPGTPAAGMDDQIAP 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 V ERL LQ L EQQ +FN VG+ ++L+E+ GK G+L+G++PWLQS+ + S + Sbjct: 357 EVMDERLQRLQALLNEQQYAFNQETVGRTTDILLERRGKLDGQLIGKTPWLQSLHIISPD 416 Query: 445 HNIGDIIKVRITDVKISTLYGEL 467 +IGD+++V +T ++L G++ Sbjct: 417 LSIGDLVEVEVTRAGPNSLTGQI 439 >gi|114766591|ref|ZP_01445547.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelagibaca bermudensis HTCC2601] gi|114541207|gb|EAU44259.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius sp. HTCC2601] Length = 435 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 253/447 (56%), Positives = 323/447 (72%), Gaps = 17/447 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ F+K+YGCQMNVYDS RM + QGY + +S DDAD+I+LNTCHIREKAAEKVYS Sbjct: 4 PKKLFIKTYGCQMNVYDSERMAEAMGGQGYVQTDSPDDADMILLNTCHIREKAAEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ R DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL +A Sbjct: 64 LGRYKGLKSERP----DLKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQSYHRLPELEAKA 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R G++ +DTD+ EDKFERL KRG TAFLT+QEGCDKFC FCVVPYTRG E+ Sbjct: 120 RGGEKALDTDFPEEDKFERLK---SRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLV 261 SR +V+ EAR L++ GV E+TLLGQNVNA+ G +GL G L+ L++I GL Sbjct: 177 SRPADRVLTEARDLVERGVRELTLLGQNVNAYHGHDRGLAG-------LIRELAKIDGLE 229 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP DM D LI AHGD D LMPYLHLPVQ+GSDRILK MNR+HTA +Y ++I+R Sbjct: 230 RIRFTTSHPNDMDDDLIAAHGDCDKLMPYLHLPVQAGSDRILKRMNRQHTAEQYLRLIER 289 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPD+ +S DFIVGFP ET++DFR TM L++ + Y AFSFKYS R GTP + Q Sbjct: 290 LRAARPDLHLSGDFIVGFPEETEEDFRDTMALIEAVQYGSAFSFKYSERPGTPAAER-PQ 348 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V E K +RL LQ L QQ + DA VG+ + VL EK G+ G++VG+S +L +V + Sbjct: 349 VSEAEKDDRLQRLQALLTRQQRALQDAMVGRDVGVLFEKAGRLPGQMVGKSDYLHAVHVA 408 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 ++ GD+ VRI + ++L G LV Sbjct: 409 AEGLQPGDLRPVRIVESGPNSLKGVLV 435 >gi|302381348|ref|YP_003817171.1| RNA modification enzyme, MiaB family [Brevundimonas subvibrioides ATCC 15264] gi|302191976|gb|ADK99547.1| RNA modification enzyme, MiaB family [Brevundimonas subvibrioides ATCC 15264] Length = 466 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 251/461 (54%), Positives = 320/461 (69%), Gaps = 4/461 (0%) Query: 10 VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69 V MV V P+R F+K+YGCQMNVYDS RM D+ GY ++ + AD ++LNT Sbjct: 6 VPPMVETAVPPA-APKRLFIKTYGCQMNVYDSERMADVLRPLGYAPTDTPEGADFVILNT 64 Query: 70 CHIREKAAEKVYSFLGRIRNLKNSRIKEGGD-LLVVVAGCVAQAEGEEILRRSPIVNVVV 128 CHIREKAAEKVYS LG++R +K + GG + + VAGCVAQAEGEEI+RR P V++VV Sbjct: 65 CHIREKAAEKVYSELGKLRLMKLDKAASGGGAMTIAVAGCVAQAEGEEIMRRQPAVDIVV 124 Query: 129 GPQTYYRLPELLER-ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187 GPQ Y++LPELL R AR + D++ +KF+ ++ G G TAFLT+QEGCD Sbjct: 125 GPQAYHQLPELLTRTARARGERIGADFAPNEKFDAMAPELLGVRGVDGPTAFLTVQEGCD 184 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247 KFC+FCVVPYTRG E SR ++ V+DEAR L GV E+TLLGQNVNA+ G G DG T Sbjct: 185 KFCSFCVVPYTRGAEWSRPVADVLDEARGLAAQGVREVTLLGQNVNAYDGAGPDG-VWTL 243 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 + L +L+E+ GL R+RYTTSHP DMS+ LI+AH +LD LMPYLHLPVQSGSDRIL++MN Sbjct: 244 AKLARALAEVPGLDRIRYTTSHPNDMSEDLIEAHRELDALMPYLHLPVQSGSDRILRAMN 303 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R+H +Y +I RIR RPDIAIS DFIVGFPGETD DF T+ LV ++GYA AF+F Y Sbjct: 304 RKHGRAKYIDLIGRIREARPDIAISGDFIVGFPGETDRDFEETLGLVREVGYASAFTFMY 363 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 SPR GTP + M QV V RL LQ + EQQ++FN A G+ + VL EK G+ + Sbjct: 364 SPRPGTPAATMGTQVPPEVALARLHALQALIVEQQMAFNVAQAGKTLNVLFEKKGRNGRQ 423 Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +GRSP+LQSV + +H +G I+ V I + ++L G L+ Sbjct: 424 AIGRSPYLQSVHVEDADHLMGRIVPVLIEHGQQNSLKGRLI 464 >gi|83941259|ref|ZP_00953721.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfitobacter sp. EE-36] gi|83847079|gb|EAP84954.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfitobacter sp. EE-36] Length = 439 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 245/441 (55%), Positives = 314/441 (71%), Gaps = 9/441 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ F+K+YGCQMNVYDS RM + Y + DAD+I+LNTCHIREKAAEKVYS Sbjct: 3 APKKLFIKTYGCQMNVYDSERMAESL-GDNYVETKTAADADMILLNTCHIREKAAEKVYS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR++ LK DL + VAGCVAQAEG EI+RR P V++VVGPQ+Y+RLP + R Sbjct: 62 ELGRLKPLKEL----NPDLKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLPAMEAR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK +DTD+ EDKFE+L G R +AFLT+QEGCDKFC FCVVPYTRG E Sbjct: 118 VRSGKTALDTDFPEEDKFEKLK---GRGKATRAPSAFLTVQEGCDKFCAFCVVPYTRGAE 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++V+ EAR+L++ GV E+TLLGQNVNA+ G G +G T + L+ L++I GL R Sbjct: 175 VSRPATRVLTEARELVERGVREVTLLGQNVNAYHGVGEEGADYTLARLIKELAKIDGLER 234 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP DM D LI AHG++D LMPYLHLPVQSGSDRILK MNR HTA Y ++I+RI Sbjct: 235 IRYTTSHPNDMDDALIAAHGEIDKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLIERI 294 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPDI +S DFIVGFP ETD DF ATM+LV ++ Y A+SFKYS R GTP + QV Sbjct: 295 RAARPDIVMSGDFIVGFPEETDADFEATMELVREVKYGYAYSFKYSTRPGTPAAER-PQV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 + + ERL LQ + QQ ++ VG+ + VL+EK G+E G++VG+S +L SV ++ Sbjct: 354 EPAIADERLQRLQGLITGQQREIQNSMVGRDVSVLVEKAGREAGQMVGKSEYLHSVHIDE 413 Query: 443 KNHNIGDIIKVRITDVKISTL 463 IGD+++VRI D K ++L Sbjct: 414 AQAEIGDVVRVRIVDAKTNSL 434 >gi|329113346|ref|ZP_08242127.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Acetobacter pomorum DM001] gi|326697171|gb|EGE48831.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Acetobacter pomorum DM001] Length = 472 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 244/442 (55%), Positives = 313/442 (70%), Gaps = 2/442 (0%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 V ++GCQMNVYDS RM D+ GY+ V + D AD+I+LNTCHIR++AAEKV+S LGR Sbjct: 25 LHVITWGCQMNVYDSARMGDVLRPLGYQPVATPDAADMIILNTCHIRDRAAEKVFSELGR 84 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R +K +R G ++ VAGCVAQAEG+EIL R+P V++V+GPQTY+RLPE++ RA Sbjct: 85 LRKIKEARETAGQQTIIAVAGCVAQAEGQEILARAPYVDIVLGPQTYHRLPEMVARAARA 144 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++TD+ E KF+ L + TAFLTIQEGCDKFC+FCVVPYTRG E SR Sbjct: 145 GGAVIETDFPAEQKFDFLPESEAPQTAGN-YTAFLTIQEGCDKFCSFCVVPYTRGAESSR 203 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + V+ EAR+++++GV +I LLGQNVNA+ G+G DG L Y L+++ GL R+RY Sbjct: 204 PVLSVLAEARRMVESGVKDICLLGQNVNAYHGEGPDGSTWGLPQLAYELAKLPGLSRIRY 263 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TSHPRDM D LI AH DL LMP+LHLPVQ+GSDRIL++MNR HTA EYR I+ R+R Sbjct: 264 MTSHPRDMDDALIAAHRDLPELMPFLHLPVQAGSDRILRAMNRGHTADEYRDIVRRLREA 323 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RPD+A+SSDFIVG PGETD+DF ATM LV +G+A A+SFKYSPR GTP + QV E+ Sbjct: 324 RPDLALSSDFIVGHPGETDEDFEATMQLVRDVGFALAYSFKYSPRPGTPAAGAGMQVPED 383 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 VK RL LQ LREQQ +FN VG+ I VL G++ G++ GRSPWLQ V ++ H Sbjct: 384 VKDARLQALQALLREQQDAFNATLVGKTIPVLFTSEGRKPGQIAGRSPWLQPVHVSGPKH 443 Query: 446 NIGDIIKVRITDVKISTLYGEL 467 IG + VRI + ++L G L Sbjct: 444 LIGKELPVRIVERLTNSLSGVL 465 >gi|260427313|ref|ZP_05781292.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Citreicella sp. SE45] gi|260421805|gb|EEX15056.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Citreicella sp. SE45] Length = 435 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 251/447 (56%), Positives = 320/447 (71%), Gaps = 17/447 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ F+K+YGCQMNVYDS RM + QGY + +S DDAD+I+LNTCHIREKAAEKVYS Sbjct: 4 PKKLFIKTYGCQMNVYDSERMAEAMGGQGYVQTDSPDDADMILLNTCHIREKAAEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK R DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL +A Sbjct: 64 LGRYKVLKAERP----DLKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQSYHRLPELEAKA 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R G++ +DTD+ EDKFERL KRG TAFLT+QEGCDKFC FCVVPYTRG E+ Sbjct: 120 RSGEKALDTDFPEEDKFERLQARPKA---KRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLV 261 SR +V+ EAR L++ GV EITLLGQNVNA+ G +GL G L+ L+ I GL Sbjct: 177 SRPADRVLTEARDLVERGVREITLLGQNVNAYHGHDRGLAG-------LIRELAAIDGLE 229 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP DM D LI AHGD + LMPYLHLPVQ+GSDRILK MNR HTA Y ++++R Sbjct: 230 RIRFTTSHPNDMDDALIAAHGDCEKLMPYLHLPVQAGSDRILKRMNRHHTAEAYLKLVER 289 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPD+ +S DFIVGFP ET++DF+AT+DLV+ + Y AFSFKYS R GTP + Q Sbjct: 290 LRAARPDLHLSGDFIVGFPEETEEDFQATLDLVEAVQYGSAFSFKYSERPGTPAAER-PQ 348 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V E K +RL LQ L QQ + DA +G+ + VL EK G+ G++VG+S +L +V + Sbjct: 349 VPEAEKDDRLQRLQALLVRQQRALQDAMIGREVGVLFEKAGRRPGQMVGKSDYLHAVYVE 408 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + GD+ +VRI + ++L G L Sbjct: 409 ADGLARGDLRRVRIVESSPNSLRGVLA 435 >gi|209883674|ref|YP_002287531.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Oligotropha carboxidovorans OM5] gi|229890581|sp|B6JCT6|MIAB_OLICO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|209871870|gb|ACI91666.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Oligotropha carboxidovorans OM5] Length = 475 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 233/450 (51%), Positives = 319/450 (70%), Gaps = 5/450 (1%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +KSYGCQMNVYD+ RM D +G+ +ADL++LNTCHIREKA+EKV+S Sbjct: 6 PRKLHIKSYGCQMNVYDAQRMVDTLAPEGFVETADPAEADLVILNTCHIREKASEKVFSE 65 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R +K + G ++ + VAGCVAQAEG EI RR+ V+VVVGPQ+Y+ LP+LL +A Sbjct: 66 LGRLRVIKEEAARTGREMKIAVAGCVAQAEGAEITRRASTVDVVVGPQSYHNLPKLLAKA 125 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R G ++T++ +EDKF L R RGV+AF+T+QEGCDKFCTFCVVPYTRG+E+ Sbjct: 126 RDGAPAIETEFPIEDKFSALPAPKPAAIRARGVSAFVTVQEGCDKFCTFCVVPYTRGMEV 185 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ +V +A++L +NGV E+TL+GQNVNA+ G +G + LL+ L+ + G+ RL Sbjct: 186 SRPVADIVADAKRLAENGVRELTLIGQNVNAYHGDDENGRTSSLGRLLHRLAMLPGIARL 245 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY+TSHPRD+ D LI+AH D+ +MP++HLPVQSGSDRIL +MNR+HTA +Y + I+R R Sbjct: 246 RYSTSHPRDVDDSLIEAHRDIPAVMPFVHLPVQSGSDRILAAMNRKHTAADYIRTIERFR 305 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE--- 380 VRP+IA SSDFIVGFPGE++ DF T+ LV +IGYA A+SFKYSPR GTP ++M E Sbjct: 306 KVRPEIAFSSDFIVGFPGESEQDFADTLALVTQIGYAGAYSFKYSPRPGTPAADMQETDT 365 Query: 381 --QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 V V ERL LQ + QQ SFN A +G+ +EVL E+ +E G++VGR+ +LQ Sbjct: 366 ALAVPAAVMDERLAQLQALIDAQQASFNRAAIGRTVEVLFERAAREPGQIVGRTAYLQPA 425 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG ++ V I ++ +L G L Sbjct: 426 HVMASPDIIGKVLPVTIDSLERYSLKGRLA 455 >gi|162147627|ref|YP_001602088.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gluconacetobacter diazotrophicus PAl 5] gi|229890548|sp|A9HIM2|MIAB_GLUDA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|161786204|emb|CAP55786.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 480 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 253/470 (53%), Positives = 323/470 (68%), Gaps = 13/470 (2%) Query: 11 AHMVSQIVDQCIVPQR-----------FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59 A VS + DQ P V ++GCQMNVYDS RM D+ GY V++ Sbjct: 6 AQEVSAVTDQPACPPAMDLAPASGSRGLHVITWGCQMNVYDSARMTDVLRPLGYHPVDTP 65 Query: 60 DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119 D AD+++LNTCHIR++AAEKV+S LGR+R +K +R EG ++ VAGCVAQAEG+EIL Sbjct: 66 DTADMVILNTCHIRDRAAEKVFSELGRLRLVKEARATEGQQTVLAVAGCVAQAEGKEILA 125 Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178 R+P V++V+GPQTY+RLPE++ RA V+DTD+ E KF+ L + G+T+ Sbjct: 126 RAPFVDIVLGPQTYHRLPEMVARAARAAGAVIDTDFPAEQKFDFLPDAQAPQS-PGGITS 184 Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238 FLTIQEGCDKFC+FCVVPYTRG E SR ++ V+ EAR++++ G EITLLGQNVNA+ G+ Sbjct: 185 FLTIQEGCDKFCSFCVVPYTRGAEASRPVASVLREARRMVECGAREITLLGQNVNAYHGE 244 Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 G DG + L +L+ I GL R+RYTTSHPRDM LI AH DL LMP+LHLPVQSG Sbjct: 245 GPDGRVWGLARLAEALAAIPGLARIRYTTSHPRDMDADLIAAHRDLPALMPFLHLPVQSG 304 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 SDRIL +MNR HTA +YR ++ R+R RPDIA+SSDFIVG PGETD DF AT+ L+ +G Sbjct: 305 SDRILDAMNRGHTAADYRDLVLRLRDARPDIALSSDFIVGHPGETDADFEATLQLIRDVG 364 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 +AQAFSFKYSPR GTP + QV E+VK RL LQ LR QQ +FND VG ++ VL Sbjct: 365 FAQAFSFKYSPRPGTPAAGAPLQVAEDVKDARLQALQALLRTQQDAFNDGTVGHVVPVLF 424 Query: 419 EKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 HG++ G+L GRSP+LQ V + + IG I V I + ++L G LV Sbjct: 425 TGHGRKAGQLSGRSPYLQPVHVEGPDSLIGQIANVEIRERYTNSLSGTLV 474 >gi|110681057|ref|YP_684064.1| tRNA-i(6)A37 thiotransferase enzyme MiaB, putative [Roseobacter denitrificans OCh 114] gi|123361551|sp|Q161G5|MIAB_ROSDO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|109457173|gb|ABG33378.1| tRNA-i(6)A37 thiotransferase enzyme MiaB, putative [Roseobacter denitrificans OCh 114] Length = 441 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 243/441 (55%), Positives = 322/441 (73%), Gaps = 8/441 (1%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ F+K+YGCQMNVYDS RM + ++GY + +DAD+I+LNTCHIREKAAEKVYS Sbjct: 3 APKKLFIKTYGCQMNVYDSERMSEALVAEGYVETKTAEDADMILLNTCHIREKAAEKVYS 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR+++LK + DL + VAGCVAQAEGEEI+RR P V++VVGPQ+Y+RLP++ R Sbjct: 63 ELGRLKSLK----ADNPDLKLGVAGCVAQAEGEEIMRRQPAVDLVVGPQSYHRLPQMEAR 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G + +DTD+ EDKFE L +R +AFLT+QEGCDKFC FCVVPYTRG E Sbjct: 119 LREGHKALDTDFPPEDKFEELKARPKA---RRAPSAFLTVQEGCDKFCAFCVVPYTRGAE 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR +++V+DEAR L++ GV EITLLGQNVNA+ G G DG + T + L+++L++I GL R Sbjct: 176 VSRPVTRVLDEARDLVERGVREITLLGQNVNAYHGAGADGNEKTLAQLIWALNDIDGLER 235 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP DM D LI+AH D LMPYLHLPVQSGSDRILK MNR+HTA Y ++I+RI Sbjct: 236 IRFTTSHPNDMQDDLIEAHRDCPKLMPYLHLPVQSGSDRILKRMNRKHTADSYLRLIERI 295 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI +S DFIVGFP ET+ DF+AT+DL++ + Y A+SFKYS R GTP + QV Sbjct: 296 RVGRPDILLSGDFIVGFPEETEADFQATLDLIEAVNYGYAYSFKYSTRPGTPAAERA-QV 354 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 D ERL +Q + QQ + VG+ + VLIEK G+ +G++VG+S +L +V ++ Sbjct: 355 DPVEADERLQRIQALITRQQQDIQQSMVGRDVSVLIEKPGRFEGQMVGKSEYLHAVHVDQ 414 Query: 443 KNHNIGDIIKVRITDVKISTL 463 + IGDI+ VRI + K ++L Sbjct: 415 CSAQIGDILPVRIVEAKRNSL 435 >gi|255263805|ref|ZP_05343147.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thalassiobium sp. R2A62] gi|255106140|gb|EET48814.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thalassiobium sp. R2A62] Length = 436 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 243/447 (54%), Positives = 319/447 (71%), Gaps = 17/447 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ F+K+YGCQMNVYDS RM + QGY + DDAD+I+LNTCHIREKAAEK+YS Sbjct: 4 PKKLFIKTYGCQMNVYDSERMAEALGGQGYVETKTPDDADMILLNTCHIREKAAEKIYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R K+++ DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+ + Sbjct: 64 LGRYRGFKDAKP----DLKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQSYHRLPEMEDAV 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G++ +DTD+ EDKFE L RG TAFLT+QEGCDKFC FCVVPYTRG E+ Sbjct: 120 SRGEKALDTDFPEEDKFEHLK---SRPKAARGATAFLTVQEGCDKFCAFCVVPYTRGAEL 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGLV 261 SR +++ EA+ L++ GV EITLLGQNVNA+ G GL G L++ L ++ GL Sbjct: 177 SRPADRIIREAQDLVERGVREITLLGQNVNAYHGHEGGLAG-------LIWDLDKVDGLK 229 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP DM LI AHG D LMPYLHLPVQSGSDRILK+MNR+HT EY +I+R Sbjct: 230 RIRFTTSHPNDMDQALIDAHGTCDKLMPYLHLPVQSGSDRILKAMNRKHTREEYFALIER 289 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ RPD+ +S DFIVGFPGETD DF TMDLV ++ + QA+SFKYS R GTP + Q Sbjct: 290 IRAARPDLLLSGDFIVGFPGETDQDFEDTMDLVRRVNFGQAYSFKYSTRPGTPAAEK-PQ 348 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 +D+ + ERL LQ+ L+EQQV+ + VG+ + VL EK G+E G+L+G+S +L +V Sbjct: 349 MDDGLATERLHRLQELLKEQQVAAQEGMVGRDVRVLFEKKGREAGQLIGKSEYLHAVHAE 408 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG + KV + + + ++L+ LV Sbjct: 409 ADDAMIGTVQKVHVIEARTNSLHARLV 435 >gi|163741718|ref|ZP_02149108.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Phaeobacter gallaeciensis 2.10] gi|161384891|gb|EDQ09270.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Phaeobacter gallaeciensis 2.10] Length = 440 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 249/449 (55%), Positives = 324/449 (72%), Gaps = 15/449 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ F+K+YGCQMNVYDS RM + +GY S DDAD+I+LNTCHIREKAAEKVYS Sbjct: 3 APKKLFIKTYGCQMNVYDSERMAEALGGEGYVETKSPDDADMILLNTCHIREKAAEKVYS 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR + LK E DL + VAGCVAQAEG+EI+RR P+V++VVGPQ+Y+RLPE+ + Sbjct: 63 ELGRFKGLK----AEKPDLKIGVAGCVAQAEGQEIMRRQPLVDLVVGPQSYHRLPEMEAK 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTR 199 AR G++V+DTD+ EDKFE+L NR KRG TAFLT+QEGCDKFC FCVVPYTR Sbjct: 119 AREGEKVLDTDFPEEDKFEKLK------NRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTR 172 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E+SR +++ EA+ L++ GV EITLLGQNVNA+ G G +G+K T + L++ L ++ G Sbjct: 173 GAEVSRPADRILREAQDLVERGVREITLLGQNVNAYHGAGPNGDK-TLAQLIWELDKVDG 231 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+TTSHP DM D LI+AHG LMPYLHLPVQ+GSD+ILK MNR HTA Y ++I Sbjct: 232 LERIRFTTSHPNDMQDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRAHTAESYLRLI 291 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +RIR+ RPDI IS DFIVGFP ET+ DF+AT+DLV+++ Y A+SFKYS R GTP + Sbjct: 292 ERIRAARPDILISGDFIVGFPEETEADFQATLDLVEEVKYGTAYSFKYSTRPGTPAAER- 350 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 QVD +RL LQ L +QQ D+ VG+ + VL EK G+ G++VG+S +L +V Sbjct: 351 PQVDPAEADDRLQRLQALLTKQQREVQDSMVGRDVTVLFEKAGRFPGQMVGKSDYLHAVH 410 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IGD+ +VRI ++L G L+ Sbjct: 411 VADCDRAIGDLARVRILSSGANSLAGALI 439 >gi|148555302|ref|YP_001262884.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Sphingomonas wittichii RW1] gi|229891001|sp|A5V8Y0|MIAB_SPHWW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|148500492|gb|ABQ68746.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sphingomonas wittichii RW1] Length = 453 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 252/447 (56%), Positives = 315/447 (70%), Gaps = 8/447 (1%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ F VKS+GCQMNVYD RM ++ +QG +S D ADL+VLNTCHIREKAAEKVYS Sbjct: 9 APKSFHVKSFGCQMNVYDGARMAELLEAQGMHAADSADAADLVVLNTCHIREKAAEKVYS 68 Query: 83 FLGRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 +GRI K + +EG ++ VAGCVAQAEG EI RR+P V++VVGPQ Y+ LP+L+ Sbjct: 69 DIGRIVK-KAADAEEGRARPMIAVAGCVAQAEGPEIPRRAPAVDIVVGPQAYHNLPQLVA 127 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A G+R +DTD KF+ L R++G TAFLT+QEGCDKFCT+CVVPYTRG Sbjct: 128 DAAEGRRALDTDMPAASKFDTLP-----KRRRQGPTAFLTVQEGCDKFCTYCVVPYTRGA 182 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 EISR +VDEA+ L+D G EITLLGQNVNAW G+ G L+ +L + GL Sbjct: 183 EISRPWGAIVDEAKALVDAGAREITLLGQNVNAWTGEDDRGRTQGLDGLIRALDALPGLA 242 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP DMSD LI AHG++ LMP+LHLPVQ+GSDRILK+MNR H A Y ++I+R Sbjct: 243 RIRYTTSHPNDMSDGLIAAHGEVAKLMPFLHLPVQAGSDRILKAMNRSHDAAGYLRLIER 302 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDIA+S DFIVGFPGETD+DF AT+ +V + +AQAFSFKYSPR GTP ++M Q Sbjct: 303 VRAARPDIAVSGDFIVGFPGETDEDFEATLAIVRAVDHAQAFSFKYSPRPGTPAASMDGQ 362 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V V ERL LQ L EQQ FN A VG+ EVLIE+ GK+ G+ +G+SPWLQSV++ Sbjct: 363 VAPAVMDERLQRLQALLNEQQHRFNLATVGKRCEVLIERDGKKPGQRIGKSPWLQSVIVE 422 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ V I ++L G LV Sbjct: 423 D-GPAIGTLVTVDIVSAGPNSLSGALV 448 >gi|83313562|ref|YP_423826.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Magnetospirillum magneticum AMB-1] gi|123726842|sp|Q2VYQ8|MIAB_MAGMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|82948403|dbj|BAE53267.1| 2-methylthioadenine synthetase [Magnetospirillum magneticum AMB-1] Length = 438 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 239/440 (54%), Positives = 322/440 (73%), Gaps = 10/440 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R FVK+YGCQMNVYDS RM D+ GY + ++AD+++LNTCHIREKAAEKV+S L Sbjct: 3 KRLFVKTYGCQMNVYDSARMADVLAPLGYGPADHAEEADMVILNTCHIREKAAEKVFSEL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143 GR+R L+ ++ + GG +++ VAGCVAQAEGEEILRR+P V++V+GPQTY+RLPE++ + A Sbjct: 63 GRLRKLQAAKAEAGGRMILAVAGCVAQAEGEEILRRAPFVDIVLGPQTYHRLPEMVAQAA 122 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R G V+DT++ E KF+ L G +AFL++QEGCDKFCTFCVVPYTRG E Sbjct: 123 RAGGAVLDTEFPAEPKFDFLP-----EPHAEGTSAFLSVQEGCDKFCTFCVVPYTRGAEY 177 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + V+ EA L GV EITLLGQNVN W G GE L+ +L+E++G+ R+ Sbjct: 178 SRPAAAVLAEAATLAAGGVREITLLGQNVNGWHG----GEGWGLGRLIRALAEVEGVERI 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPRDM D LI+AH +L LMP+LHLPVQSGSDRIL +MNR H Y +++D+++ Sbjct: 234 RYTTSHPRDMDDELIRAHAELPQLMPFLHLPVQSGSDRILAAMNRGHDRDTYLRLVDKLK 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S PD+A+SSDFIVGFPGE+D DF A+MDL+ ++G+ Q +SFKYSPR GTP + M QV Sbjct: 294 SACPDLALSSDFIVGFPGESDADFEASMDLIRRVGFVQTYSFKYSPRPGTPAAAMETQVP 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 E VK ERL +Q L +Q + FN ACVG+ + +L+++ G+ G+L+GRSP++Q V + + Sbjct: 354 EAVKDERLAQVQALLLDQTMRFNHACVGREMRILLDRPGRHAGQLLGRSPYMQPVHVKAA 413 Query: 444 NHNIGDIIKVRITDVKISTL 463 H IG ++ +RIT V ++L Sbjct: 414 AHLIGTVVPLRITKVHPNSL 433 >gi|87199004|ref|YP_496261.1| tRNA-i(6)A37 modification enzyme MiaB [Novosphingobium aromaticivorans DSM 12444] gi|123736257|sp|Q2G9P6|MIAB_NOVAD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|87134685|gb|ABD25427.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Novosphingobium aromaticivorans DSM 12444] Length = 443 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 245/442 (55%), Positives = 303/442 (68%), Gaps = 12/442 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F VKS+GCQMNVYD RM ++ +QG DDADL+VLNTCHIREKA EKVYS +GR Sbjct: 14 FRVKSFGCQMNVYDGERMAELLAAQGMSAAGDGDDADLVVLNTCHIREKATEKVYSDIGR 73 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R +G L+ VAGCVAQAEGEEI+ R+P V VVVGPQ+Y+RLPE++ A G Sbjct: 74 LRR------ADGSAPLIAVAGCVAQAEGEEIMARAPSVKVVVGPQSYHRLPEMVADAAAG 127 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 KR +TD E KF L RK TAFLT+QEGCDKFCT+CVVPYTRG EISR Sbjct: 128 KRSTETDMPAEAKFAALP-----KRRKSAPTAFLTVQEGCDKFCTYCVVPYTRGAEISRP 182 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 S +V+EA+ L+ G EITLLGQNVNAW G+ G L +L+ L R+RYT Sbjct: 183 FSDLVEEAKLLVAGGAREITLLGQNVNAWAGEDDKGRPIGLDGLARALAAEPDLKRIRYT 242 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHP DM+D LI AHG+L+ LMP+LHLPVQ+G+DR+LK+MNR HTA Y +++RIR+ R Sbjct: 243 TSHPNDMTDGLIAAHGELEKLMPFLHLPVQAGNDRVLKAMNRSHTADSYMALLERIRAAR 302 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDIA+S DFIVGFPGETD +F T+ LVD +GYAQAFSFKYS R GTP + M V V Sbjct: 303 PDIALSGDFIVGFPGETDAEFEDTLRLVDAVGYAQAFSFKYSARPGTPAATMENHVPVAV 362 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 ERL LQ L Q++FN A VG+ EVL+E+ GK G+ +G+SPWLQSV S Sbjct: 363 MDERLQRLQAALNRDQLAFNKASVGKTCEVLVERRGKHPGQWLGKSPWLQSVHF-SGEAE 421 Query: 447 IGDIIKVRITDVKISTLYGELV 468 IGD++ V + + +++ G L Sbjct: 422 IGDMVTVELIEAGPNSISGRLA 443 >gi|83595099|ref|YP_428851.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodospirillum rubrum ATCC 11170] gi|123753019|sp|Q2RMT1|MIAB_RHORT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|83578013|gb|ABC24564.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodospirillum rubrum ATCC 11170] Length = 467 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 238/445 (53%), Positives = 318/445 (71%), Gaps = 6/445 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+KSYGCQMNVYD+ RM D+ GY+ V+ D ADL++LNTCHIREKAAEKV+S L Sbjct: 4 RKLFIKSYGCQMNVYDAGRMADVMAPLGYDLVSEADGADLVILNTCHIREKAAEKVFSDL 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R K + EG +LV VAGCVAQAEG E++ R+ IV++VVGPQ Y+RLPE++ + Sbjct: 64 GRLRPFKEAMAAEGRRMLVAVAGCVAQAEGAELMARAKIVDMVVGPQAYHRLPEMVAKVE 123 Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G RV+DTD+ +E KF+ L + G +AFL++QEGCDKFCTFCVVPYTRG E Sbjct: 124 RGAGRVLDTDFPIEPKFDFLPA-----PQAHGPSAFLSVQEGCDKFCTFCVVPYTRGAEY 178 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ V+ EA L + GV EITLLGQNVNA+ G+ DG L +L+EI G+ RL Sbjct: 179 SRPVADVLREAALLAEGGVREITLLGQNVNAYHGEAPDGRTWGLGRLARALAEIPGVARL 238 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPRD+ D LI AH ++ L P++HLPVQSGSDRIL +MNR H YR+IIDR+R Sbjct: 239 RYTTSHPRDVDDDLIAAHREVAALTPFIHLPVQSGSDRILAAMNRGHDVEGYRRIIDRLR 298 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + R D+A SSDFIVGFPGE++ DF+AT+ L+D++ + QA+SFKYSPR GTP + + Q+ Sbjct: 299 AARDDMAFSSDFIVGFPGESERDFQATLALIDEVRFIQAYSFKYSPRPGTPAAALSAQLP 358 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 E K+ RL+ LQ +L E Q +FN ACVG+ ++VL+++ G+ G+LVGRSPW+Q V L + Sbjct: 359 EAEKSARLIALQARLVEIQQAFNQACVGRPMDVLLDRPGRHAGQLVGRSPWMQPVHLEAP 418 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 +G + V + ++L LV Sbjct: 419 AALLGTLAPVVVETATSNSLAARLV 443 >gi|315497214|ref|YP_004086018.1| RNA modification enzyme, miab family [Asticcacaulis excentricus CB 48] gi|315415226|gb|ADU11867.1| RNA modification enzyme, MiaB family [Asticcacaulis excentricus CB 48] Length = 470 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 242/445 (54%), Positives = 313/445 (70%), Gaps = 6/445 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +K+YGCQMNVYDS RM D+ GY + + ADL++LNTCHIREKAAEKVYS + Sbjct: 25 KKLHIKTYGCQMNVYDSERMADLLRPLGYAVSDQAEGADLVLLNTCHIREKAAEKVYSEI 84 Query: 85 GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 GR++ ++ + G G + + VAGCVAQAEGEEI+ R+P V++VVGPQ Y++LPEL+ R Sbjct: 85 GRLKVMRQEKEARGEGRMTIAVAGCVAQAEGEEIMNRAPAVDLVVGPQAYHQLPELIART 144 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K + D++ EDKF+ LS + G TAFLT+QEGCDKFCTFCVVPYTRG E Sbjct: 145 TRAKGERLKADFAPEDKFDALST----ERQASGPTAFLTVQEGCDKFCTFCVVPYTRGAE 200 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR ++ +++EAR L GV EITLLGQNVNA+ G+ DGE+ T L+ +LSEI+GL R Sbjct: 201 WSRPVASILEEARSLASKGVREITLLGQNVNAYNGREADGEESTLPRLMQALSEIEGLDR 260 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP DM+D LI+AH + +MPYLHLPVQSGSD+IL++MNR+H Y +I R+ Sbjct: 261 IRYTTSHPNDMTDELIRAHAENPAVMPYLHLPVQSGSDKILRAMNRKHGRQAYIDLIARL 320 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++ P+IA+S DFIVGFPGET+ DF TMDL+ +GYA AFSFKYS R GTP + M QV Sbjct: 321 KAAVPNIALSGDFIVGFPGETEKDFEDTMDLIRTVGYASAFSFKYSKRPGTPAAAMPGQV 380 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 DE V RL LQ + EQ +F + VGQ I+VL EK G+ + VGRSPWL +V Sbjct: 381 DEAVADGRLQALQALINEQAQAFKASLVGQTIDVLFEKPGRYGQQAVGRSPWLHAVFAED 440 Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467 H IG I+ V+I V ++L GEL Sbjct: 441 AAHLIGQIVPVKIVGVGNNSLIGEL 465 >gi|209542258|ref|YP_002274487.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gluconacetobacter diazotrophicus PAl 5] gi|209529935|gb|ACI49872.1| RNA modification enzyme, MiaB family [Gluconacetobacter diazotrophicus PAl 5] Length = 469 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 247/443 (55%), Positives = 316/443 (71%), Gaps = 2/443 (0%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 V ++GCQMNVYDS RM D+ GY V++ D AD+++LNTCHIR++AAEKV+S LGR Sbjct: 22 LHVITWGCQMNVYDSARMTDVLRPLGYHPVDTPDTADMVILNTCHIRDRAAEKVFSELGR 81 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R +K +R EG ++ VAGCVAQAEG+EIL R+P V++V+GPQTY+RLPE++ RA Sbjct: 82 LRLVKEARATEGQQTVLAVAGCVAQAEGKEILARAPFVDIVLGPQTYHRLPEMVARAARA 141 Query: 147 KR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V+DTD+ E KF+ L + G+T+FLTIQEGCDKFC+FCVVPYTRG E SR Sbjct: 142 AGAVIDTDFPAEQKFDFLPDAQAPQS-PGGITSFLTIQEGCDKFCSFCVVPYTRGAEASR 200 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ V+ EAR++++ G EITLLGQNVNA+ G+G DG + L +L+ I GL R+RY Sbjct: 201 PVASVLREARRMVECGAREITLLGQNVNAYHGEGPDGRVWGLARLAEALAAIPGLARIRY 260 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTSHPRDM LI AH DL LMP+LHLPVQSGSDRIL +MNR HTA +YR ++ R+R Sbjct: 261 TTSHPRDMDADLIAAHRDLPALMPFLHLPVQSGSDRILDAMNRGHTAADYRDLVLRLRDA 320 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RPDIA+SSDFIVG PGETD DF AT+ L+ +G+AQAFSFKYSPR GTP + QV E+ Sbjct: 321 RPDIALSSDFIVGHPGETDADFEATLQLIRDVGFAQAFSFKYSPRPGTPAAGAPLQVAED 380 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 VK RL LQ LR QQ +FND VG ++ VL HG++ G+L GRSP+LQ V + + Sbjct: 381 VKDARLQALQALLRTQQDAFNDGTVGHVVPVLFTGHGRKAGQLSGRSPYLQPVHVEGPDS 440 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 IG I V I + ++L G LV Sbjct: 441 LIGQIANVEIRERYTNSLSGTLV 463 >gi|144899561|emb|CAM76425.1| tRNA-i(6)A37 modification enzyme MiaB [Magnetospirillum gryphiswaldense MSR-1] Length = 448 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 242/451 (53%), Positives = 328/451 (72%), Gaps = 19/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FVK+YGCQMNVYDS RM D+ GY +S +DAD+++LNTCHIREKA+EKV+S L Sbjct: 3 KKLFVKTYGCQMNVYDSARMADVLAPLGYGPGDSPEDADMVILNTCHIREKASEKVFSEL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K K+GG L++ VAGCVAQAEGEEILRR+P V++V+GPQTY+RLPE++ +A Sbjct: 63 GRLRQIKTE--KDGG-LIIAVAGCVAQAEGEEILRRAPFVDIVLGPQTYHRLPEMVAQAS 119 Query: 145 -------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 G V+DT++ +E KF+ L R G AFL++QEGCDKFCTFCVVPY Sbjct: 120 RAALANGNGGAVLDTEFPIEPKFDHLP-----EPRADGPAAFLSVQEGCDKFCTFCVVPY 174 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 TRG E SR ++DEA+KL+D GV EITLLGQNVNAW G DG+ +F L+ L+++ Sbjct: 175 TRGGEYSRPSQAILDEAKKLVDQGVVEITLLGQNVNAWHGD--DGK--SFGWLIRQLAKL 230 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 GL R+R+TTSHPRDM D LI AHG++ LMP+LHLPVQ+GS+R+L++MNRRH Y Sbjct: 231 DGLARIRFTTSHPRDMDDDLIDAHGEVKKLMPFLHLPVQAGSNRMLEAMNRRHDRDFYFG 290 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++D++R+ RPD+A+SSDFIVGFPGETD DF T+DLV ++G+ +SFKYS R GTP + Sbjct: 291 LVDKLRAARPDLALSSDFIVGFPGETDADFADTLDLVRRVGFVNTYSFKYSARPGTPAAI 350 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 M QVDE VK RL L L+EQ FN C+G + V++++ GK G+L+GRSP++Q Sbjct: 351 MPNQVDEAVKEARLAQLMDLLQEQTNHFNQNCLGMEMAVVLDRQGKYPGQLIGRSPYMQP 410 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V +++ H G ++ VRI+++ +L GE++ Sbjct: 411 VHVDNVAHLAGHLVTVRISEIHPRSLKGEII 441 >gi|254295429|ref|YP_003061452.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Hirschia baltica ATCC 49814] gi|254043960|gb|ACT60755.1| RNA modification enzyme, MiaB family [Hirschia baltica ATCC 49814] Length = 455 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 246/456 (53%), Positives = 327/456 (71%), Gaps = 16/456 (3%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 Q P++ F+K+YGCQMNVYDS RM+D+ GY ++ + ADL+VLNTCHIREKA EK Sbjct: 6 QIPSPKKLFIKTYGCQMNVYDSDRMKDVLKPLGYAPTDAPEGADLVVLNTCHIREKATEK 65 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 V+S LG+++ +K GG + + VAGCVAQAEG EI+RR P V++V+GPQ+Y++LPE+ Sbjct: 66 VFSELGQLKRMKADT---GGKMTIAVAGCVAQAEGAEIMRRQPAVDLVLGPQSYHKLPEM 122 Query: 140 LER-ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR---GVTAFLTIQEGCDKFCTFCVV 195 + + AR V++T++ VE+KF+ L I KR G++A ++IQEGCDKFCTFCVV Sbjct: 123 IAKVARQTGDVLETEFDVEEKFDALPI-------KRDADGMSALVSIQEGCDKFCTFCVV 175 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS--DLLYS 253 PYTRG E SR++ +V E R L GV EITLLGQNVNA+ G DG + + LL Sbjct: 176 PYTRGAEFSRNVDAIVAEVRGLAAQGVKEITLLGQNVNAFHGAAPDGGEGEWGLGQLLRH 235 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 L++I GL RLR+TTSHP+DM + LI A+G+LDVLMPY HLPVQ+GS++ILKSMNR HTA Sbjct: 236 LAKIGGLERLRFTTSHPKDMEEDLITAYGELDVLMPYFHLPVQAGSNKILKSMNRSHTAE 295 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 Y + + +IR+ RPD+A++SDFIVGFPGETD+DF ATMDLV ++ YA A+SFKYS R GT Sbjct: 296 SYIETMKQIRAQRPDVALASDFIVGFPGETDEDFEATMDLVREVKYASAYSFKYSRRPGT 355 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 PG+ M QVDE VK ERL LQ +REQ FN+ +G+ + VL +GK +G+ +G+SP Sbjct: 356 PGAEMFGQVDEAVKDERLQRLQALIREQTTEFNNNQIGKTLPVLFTHNGKLEGQALGKSP 415 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 +LQSV + + H IG I+ V I +S+L G L Sbjct: 416 YLQSVHVENAQHLIGKIVDVEIVGATLSSLTGVLTT 451 >gi|39933525|ref|NP_945801.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodopseudomonas palustris CGA009] gi|81564244|sp|Q6NCM4|MIAB_RHOPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|39647371|emb|CAE25892.1| tRNA-i(6)A37 modification enzyme MiaB [Rhodopseudomonas palustris CGA009] Length = 463 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 237/445 (53%), Positives = 326/445 (73%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +KSYGCQMNVYD+ RM D +G+ ++DDADL++LNTCHIREKA+EKVYS Sbjct: 4 PRKLHIKSYGCQMNVYDAQRMVDALAPEGFVETANVDDADLVILNTCHIREKASEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R ++ G + + VAGCVAQAEG EI+RR+P+V+VVVGPQ+Y+ LP+LL +A Sbjct: 64 LGRLRVARDEAANHGRRMQIAVAGCVAQAEGAEIIRRAPVVDVVVGPQSYHNLPQLLAKA 123 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R ++T++ +EDKF L R RG++AF+T+QEGCDKFCTFCVVPYTRG E+ Sbjct: 124 EQHGRALETEFPIEDKFGVLPQPAPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEM 183 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ +V++ ++L +NGV E+TL+GQNVNA+ G G D + L+ L+EI G+VRL Sbjct: 184 SRPVAAIVEDVKRLAENGVREVTLIGQNVNAYHGDGPDRLAWSLGRLVRRLAEIPGIVRL 243 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY+TSHP D++D L+ AH DL LMP++HLPVQSGSDRIL +MNR+HTA +YR++IDR R Sbjct: 244 RYSTSHPNDVNDDLLAAHRDLPALMPFVHLPVQSGSDRILAAMNRKHTADDYRRVIDRFR 303 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 IA SSDFIVGFPGET+ DF AT+ LV +IGYA A+SFKYSPR GTP ++M E V Sbjct: 304 LASEAIAFSSDFIVGFPGETERDFSATLALVAQIGYAGAYSFKYSPRPGTPAADMAEMVP 363 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 V ERL LQ+ + +QQ +FN A +G+ +EVL E+ G++ G++VGR+ +LQ + + Sbjct: 364 AAVMDERLEQLQQLIDQQQSAFNKAAIGRTVEVLFERAGRKPGQIVGRTAYLQPAHVMAP 423 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 + IG ++ VR+ ++ +L GEL Sbjct: 424 DSIIGKVLPVRVDSLERYSLLGELA 448 >gi|254463508|ref|ZP_05076924.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium HTCC2083] gi|206680097|gb|EDZ44584.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacteraceae bacterium HTCC2083] Length = 440 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 237/444 (53%), Positives = 322/444 (72%), Gaps = 8/444 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM + + GY + DDAD+I+LNTCHIREKAAEK+YS L Sbjct: 5 KKLFIKTYGCQMNVYDSERMSEALGASGYTETQTPDDADMILLNTCHIREKAAEKIYSEL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+++LK ++ DL + VAGCVAQAEG EI+RR P V++VVGPQ+Y+RL E+ + R Sbjct: 65 GRMKSLKTAK----PDLKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLAEMEIKTR 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ +DTD+ +EDKFE L +R AFLT+QEGCDKFC FCVVPYTRG E S Sbjct: 121 RGEKALDTDFPIEDKFEALKHRPKA---RRAPAAFLTVQEGCDKFCAFCVVPYTRGAETS 177 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + ++VDEA+ L++ GV EITLLGQNVNA+ G G DG + + L++ L ++ GL R+R Sbjct: 178 RPVQRIVDEAKNLVERGVREITLLGQNVNAYHGTGPDGNEWGLAQLIWELDKVDGLARIR 237 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP DM D LI AH LMPYLHLPVQSGSDRILK MNR HTA Y ++I+RIR+ Sbjct: 238 FTTSHPNDMQDDLIDAHAHCAKLMPYLHLPVQSGSDRILKRMNRSHTADSYLRLIERIRA 297 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDI +S DFIVGFP ET++DF+AT+DL+ ++ Y A+SFKYS R GTP + QV++ Sbjct: 298 ARPDILMSGDFIVGFPEETEEDFQATLDLIKEVRYGYAYSFKYSTRPGTPAAERA-QVED 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 V AERL LQ + +QQV ++ VG+ + +LIEK G++ G++VG+S +L +V +N + Sbjct: 357 AVAAERLQRLQALITQQQVEIQNSMVGRDVTILIEKQGRDSGQMVGKSEYLHAVHINDCD 416 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 GD+++ RIT+ ++L G ++ Sbjct: 417 AIPGDLVQARITEAVRNSLAGTMI 440 >gi|332188733|ref|ZP_08390446.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sphingomonas sp. S17] gi|332011239|gb|EGI53331.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sphingomonas sp. S17] Length = 440 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 247/446 (55%), Positives = 313/446 (70%), Gaps = 14/446 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ F VKS+GCQMNVYD RM ++ +QG + ADL+VLNTCHIREKA EKVYS Sbjct: 5 PKTFHVKSFGCQMNVYDGERMAELMAAQGLSATDDASAADLVVLNTCHIREKATEKVYSD 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +GR+R ++G ++ VAGCVAQAEG EI+RR+ V+VVVGPQ Y+ LPEL+ +A Sbjct: 65 IGRLRKDAG---EQGRKPMIAVAGCVAQAEGAEIVRRAK-VDVVVGPQAYHNLPELVAKA 120 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+ +DTD VE KF L RK G +AFLT+QEGCDKFCT+CVVPYTRG E+ Sbjct: 121 VAGEAALDTDMPVESKFAHLP-----GRRKVGPSAFLTVQEGCDKFCTYCVVPYTRGAEV 175 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SRS S +VDEA+ L+D G EITLLGQNVNAW D + L+ L I GL R+ Sbjct: 176 SRSFSAIVDEAKALVDAGAREITLLGQNVNAWN----DADDRGLHGLIRELDRISGLHRI 231 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP DM+ LI AH D++ LMP+LHLPVQSGSDRILK+MNR+HT Y ++IDR+R Sbjct: 232 RYTTSHPNDMTQGLIDAHRDVESLMPFLHLPVQSGSDRILKAMNRQHTRDSYMRVIDRVR 291 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + RPDIA+S DFIVGFPGET+++F T+ LVD +G+AQAFSFKYSPR GTP + M +Q+ Sbjct: 292 AARPDIALSGDFIVGFPGETEEEFADTLSLVDAMGHAQAFSFKYSPRPGTPAATMADQLP 351 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 V +RL LQ L Q +FN A VG+ VLIE+ GK G+++G+SPWLQSV L Sbjct: 352 AEVMDDRLQRLQAALNRDQHAFNAASVGRTCTVLIERRGKLPGQMLGKSPWLQSVHLIG- 410 Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469 +H IGD+I+V + ++L G+ V Sbjct: 411 DHQIGDLIEVELVAAGPNSLTGQAKV 436 >gi|83854736|ref|ZP_00948266.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfitobacter sp. NAS-14.1] gi|83842579|gb|EAP81746.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfitobacter sp. NAS-14.1] Length = 439 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 243/441 (55%), Positives = 313/441 (70%), Gaps = 9/441 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ F+K+YGCQMNVYDS RM + Y + DAD+I+LNTCHIREKAAEKVYS Sbjct: 3 APKKLFIKTYGCQMNVYDSERMAESL-GDNYVETKTAADADMILLNTCHIREKAAEKVYS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR++ LK DL + VAGCVAQAEG EI+RR P V++VVGPQ+Y+RLP + R Sbjct: 62 ELGRLKPLKEL----NPDLKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLPAMEAR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK +DTD+ EDKFE+L G R +AFLT+QEGCDKFC FCVVPYTRG E Sbjct: 118 VRSGKTALDTDFPEEDKFEKLK---GRGKATRAPSAFLTVQEGCDKFCAFCVVPYTRGAE 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++V+ EAR+L++ GV E+TLLGQNVNA+ G G +G T + L+ L++I GL R Sbjct: 175 VSRPATRVLTEARELVERGVREVTLLGQNVNAYHGVGEEGADYTLARLIKELAKIDGLER 234 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP DM D LI AHG++D LMPYLHLPVQSGSDRILK MNR HTA Y ++I+RI Sbjct: 235 IRYTTSHPNDMDDALIAAHGEIDKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLIERI 294 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPDI +S DFIVGFP ET DF ATM+LV ++ Y A+SFKYS R GTP + QV Sbjct: 295 RAARPDIVMSGDFIVGFPEETHTDFEATMELVREVKYGYAYSFKYSTRPGTPAAER-PQV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 + + ERL LQ + QQ ++ VG+ + VL+EK G+E G++VG+S +L SV ++ Sbjct: 354 EAAIADERLQRLQGLITGQQREIQNSMVGRDVSVLVEKAGREAGQMVGKSEYLHSVHIDE 413 Query: 443 KNHNIGDIIKVRITDVKISTL 463 +GD+++VRI D K ++L Sbjct: 414 AQAEVGDVVRVRIVDAKTNSL 434 >gi|296282491|ref|ZP_06860489.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Citromicrobium bathyomarinum JL354] Length = 445 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 234/445 (52%), Positives = 313/445 (70%), Gaps = 11/445 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ + VKS+GCQMNVYD RM ++ +QG ++ADL+VLNTCHIREKA EKVYS Sbjct: 6 TPKTYRVKSFGCQMNVYDGERMGELLAAQGITPAPEGEEADLVVLNTCHIREKATEKVYS 65 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +GR+R ++G L+ VAGCVAQAEG EI+ R+P V++VVGPQ Y LP +LER Sbjct: 66 DIGRLRR------EDGSSPLIAVAGCVAQAEGREIMTRAPAVSMVVGPQAYQNLPAMLER 119 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A GKR + D + E KF L R AFLTIQEGCDKFCT+CVVPYTRG E Sbjct: 120 AVSGKRTTEMDLAAEAKFAGLP-----QRRTAPAAAFLTIQEGCDKFCTYCVVPYTRGAE 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR +++V EA++L++ G EITLLGQNV+AW G+ G + + L+ L++I GL R Sbjct: 175 ISRPFAELVAEAQRLVEGGAREITLLGQNVSAWSGEDAKGHRTGLAGLVRELAKIDGLAR 234 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP DM + +I AHG+LD LMPYLHLPVQ+G++R+LK+MNR HT Y Q+++R Sbjct: 235 IRYTTSHPADMDEEIIAAHGELDKLMPYLHLPVQAGNNRVLKAMNRSHTVESYLQLLERF 294 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPD+A+S DFIVGFPGET+ +F T+ +VD++ YAQAFSFKYSPR GTP + M Q+ Sbjct: 295 RAARPDLALSGDFIVGFPGETEAEFEDTLKVVDEVRYAQAFSFKYSPRPGTPAAGMDGQI 354 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 +V +RL LQ +L Q +FN A V + EVL+E+ GK G+ +G+SPWLQSV Sbjct: 355 APDVMKDRLARLQDRLNRDQHAFNTASVSKTCEVLVERKGKLPGQWLGKSPWLQSVFFER 414 Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467 ++ +GD+++VR+ + ++L GEL Sbjct: 415 EDTQVGDLVQVRLEEAGPNSLRGEL 439 >gi|163739041|ref|ZP_02146454.1| tRNA-i(6)A37 modification enzyme MiaB [Phaeobacter gallaeciensis BS107] gi|161387846|gb|EDQ12202.1| tRNA-i(6)A37 modification enzyme MiaB [Phaeobacter gallaeciensis BS107] Length = 440 Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust. Identities = 248/449 (55%), Positives = 322/449 (71%), Gaps = 15/449 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ F+K+YGCQMNVYDS RM + +GY S DDAD+I+LNTCHIREKAAEKVYS Sbjct: 3 APKKLFIKTYGCQMNVYDSERMAEALGGEGYVETKSPDDADMILLNTCHIREKAAEKVYS 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR + LK E DL + VAGCVAQAEG+EI+RR P+V++VVGPQ+Y+RLPE+ + Sbjct: 63 ELGRFKGLK----AEKPDLKIGVAGCVAQAEGQEIMRRQPLVDLVVGPQSYHRLPEMEAK 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTR 199 AR G++V+DTD+ EDKFE+L NR KRG TAFLT+QEGCDKFC FCVVPYTR Sbjct: 119 AREGEKVLDTDFPEEDKFEKLK------NRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTR 172 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E+SR +++ EA+ L++ GV EITLLGQNVNA+ G G +G+ T + L++ L ++ G Sbjct: 173 GAEVSRPADRILREAQDLVERGVREITLLGQNVNAYHGAGPNGD-MTLAQLIWELDKVDG 231 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+TTSHP DM D LI+AHG LMPYLHLPVQ+GSD+ILK MNR HTA Y ++I Sbjct: 232 LERIRFTTSHPNDMQDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRAHTAESYLRLI 291 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +RIR+ RPDI IS DFIVGFP ET+ DF+AT+DLV+++ Y A+SFKYS R GTP + Sbjct: 292 ERIRAARPDILISGDFIVGFPEETEADFQATLDLVEEVKYGTAYSFKYSTRPGTPAAER- 350 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 QVD +RL LQ L QQ D+ VG+ + VL EK G+ G++VG+S +L +V Sbjct: 351 PQVDPKEADDRLQRLQALLTTQQREVQDSMVGRDVTVLFEKAGRFPGQMVGKSDYLHAVH 410 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IGD+ +VRI ++L G L+ Sbjct: 411 VADCDRAIGDLARVRILSSGANSLAGALI 439 >gi|99080026|ref|YP_612180.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria sp. TM1040] gi|123077818|sp|Q1GK98|MIAB_SILST RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|99036306|gb|ABF62918.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria sp. TM1040] Length = 440 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 248/446 (55%), Positives = 321/446 (71%), Gaps = 9/446 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ ++K+YGCQMNVYDS RM + QGY + DDAD+I+LNTCHIREKAAEKVYS Sbjct: 3 APKKLYIKTYGCQMNVYDSERMAETLGGQGYVETQTPDDADMILLNTCHIREKAAEKVYS 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR + LK E DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+ + Sbjct: 63 ELGRFKGLK----AEKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAK 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A G++V+DTD+ EDKFE+L KRG TAFLT+QEGCDKFC FCVVPYTRG E Sbjct: 119 AGTGEKVLDTDFPEEDKFEKLKRRP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + +V+ EA L++ GV EITLLGQNVNA+ G G +G+ T + L++ L +I GL R Sbjct: 176 VSRPVDRVLREAEDLVERGVREITLLGQNVNAYHGAGPNGD-MTLAQLIWELDKIDGLER 234 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP DM D LI+AHG LMPYLHLPVQ+GSD+ILK MNR HTA Y ++I+RI Sbjct: 235 IRFTTSHPNDMMDDLIEAHGTCKKLMPYLHLPVQAGSDKILKRMNRSHTAESYIRLIERI 294 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPDI IS DFIVGFP ET++DF+AT+DLV+++ Y A+SFKYS R GTP + QV Sbjct: 295 RAARPDILISGDFIVGFPEETEEDFQATLDLVEEVKYGTAYSFKYSTRPGTPAAERA-QV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 D +RL LQ L QQ D+ VG+ + VL EK G+ G++VG+S +L +V + Sbjct: 354 DPKEADDRLQRLQAVLTRQQREVQDSMVGRELGVLFEKAGRFAGQMVGKSDYLHAVHVAD 413 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 + IGD+ +VRI ++L GEL+ Sbjct: 414 CDAKIGDLRRVRIVSSGANSLAGELI 439 >gi|259415579|ref|ZP_05739500.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Silicibacter sp. TrichCH4B] gi|259348809|gb|EEW60571.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Silicibacter sp. TrichCH4B] Length = 440 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 246/447 (55%), Positives = 321/447 (71%), Gaps = 9/447 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ ++K+YGCQMNVYDS RM + QGY + DDAD+I+LNTCHIREKAAEKVYS Sbjct: 3 APKKLYIKTYGCQMNVYDSERMAETLGGQGYVETKTPDDADMILLNTCHIREKAAEKVYS 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR + LK E DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+ + Sbjct: 63 ELGRFKGLK----AEKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAK 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A G++V+DTD+ EDKFE+L KRG TAFLT+QEGCDKFC FCVVPYTRG E Sbjct: 119 AGAGEKVLDTDFPEEDKFEKLKRRP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR +++ EA L++ GV EITLLGQNVNA+ G G +G+ T + L++ L +++GL R Sbjct: 176 VSRPADRILREAEDLVERGVREITLLGQNVNAYHGAGPNGD-MTLAQLIWELDKVEGLER 234 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP DM D LI+AHG LMPYLHLPVQ+GSD+ILK MNR HTA Y ++I+RI Sbjct: 235 IRFTTSHPNDMMDDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRSHTAESYIRLIERI 294 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPDI IS DFIVGFP ET++DF+AT+DLV+++ Y A+SFKYS R GTP + QV Sbjct: 295 RAARPDILISGDFIVGFPEETEEDFQATLDLVEEVKYGTAYSFKYSTRPGTPAAERA-QV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 D +RL LQ L QQ D+ VG+ + VL EK G+ G++VG+S +L +V + Sbjct: 354 DPKEADDRLQRLQALLTRQQREVQDSMVGRELGVLFEKKGRFPGQMVGKSDYLHAVHVAD 413 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 + IGD+ +VRI ++L GEL+ Sbjct: 414 CDAEIGDLRRVRIVSSGANSLAGELIA 440 >gi|254696401|ref|ZP_05158229.1| hypothetical protein Babob28_01463 [Brucella abortus bv. 2 str. 86/8/59] Length = 388 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 232/385 (60%), Positives = 297/385 (77%) Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGR+R ++++R +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP L Sbjct: 1 SALGRLRKMRDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALA 60 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R R G++VV+TDY++EDKFE L RKRGV+AFLT+QEGCDKFCTFCVVPYTRG Sbjct: 61 RVRGGEKVVETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGS 120 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SRS+ Q+V EA +L D+GV E+TLLGQNVNAW G+G DG + +LL+ L+ I G+ Sbjct: 121 EVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIA 180 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLRYTTSHPRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+R Sbjct: 181 RLRYTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIER 240 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+VRPD+A+S DFIVGFPGETD DF TM LV + YAQA+SFKYSPR GTPG+++ + Sbjct: 241 IRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDH 300 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V+E VK ERL LQ L QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL V+++ Sbjct: 301 VEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIID 360 Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466 +GDII V+I ++L + Sbjct: 361 DNKDRVGDIIHVKIVSTGTNSLIAQ 385 >gi|146279874|ref|YP_001170032.1| hypothetical protein Rsph17025_3872 [Rhodobacter sphaeroides ATCC 17025] gi|229890629|sp|A4WZB3|MIAB_RHOS5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|145558115|gb|ABP72727.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides ATCC 17025] Length = 436 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 252/448 (56%), Positives = 320/448 (71%), Gaps = 22/448 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM + ++GY ++AD+++LNTCHIREKAAEKVYS L Sbjct: 5 RKLFIKTYGCQMNVYDSERMAEALGAKGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R LK +R DL + VAGCVAQAEGEEILRR P+V++VVGPQ+Y+RLP++LER Sbjct: 65 GRLRPLKVARP----DLKIGVAGCVAQAEGEEILRRMPLVDLVVGPQSYHRLPDMLERTE 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G RV+DTD+ EDKFE L RK RG TAFLT+QEGCDKFC FCVVPYTRG E Sbjct: 121 GGARVIDTDFPEEDKFEHLP------ERKALRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSDLLYSLSEIKGL 260 +SR ++++ EAR L++ GV EITLLGQNVNAW G+GL G L+ L+ I GL Sbjct: 175 VSRPFARLMAEARALVEKGVREITLLGQNVNAWSNDGRGLGG-------LIRELARIDGL 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLRYTTSHP DM+D LI+AHG LMPYLHLPVQSGSDRILK+MNR+H A +Y ++++ Sbjct: 228 ERLRYTTSHPNDMADDLIEAHGQEPKLMPYLHLPVQSGSDRILKAMNRKHAAEQYLRLVE 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR+ RPDI ++SDFIVGFPGETD DF AT+ L+ +G+ AFSFKYS R GTP + E Sbjct: 288 RIRAARPDILLTSDFIVGFPGETDADFEATLALIRAVGFGSAFSFKYSARPGTPAAEKPE 347 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 E A RL LQ L EQQ + A VG+ + VL EK G+ G++VG+S +L +V + Sbjct: 348 LPAELCDA-RLQTLQALLGEQQRAAQAAMVGRELGVLYEKAGRLPGQMVGKSDYLHAVHV 406 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 GD+++VRIT ++L GE + Sbjct: 407 EDPGARPGDLVRVRITASGPNSLAGERI 434 >gi|329847364|ref|ZP_08262392.1| tRNA-i6A37 thiotransferase enzyme MiaB [Asticcacaulis biprosthecum C19] gi|328842427|gb|EGF91996.1| tRNA-i6A37 thiotransferase enzyme MiaB [Asticcacaulis biprosthecum C19] Length = 448 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 241/447 (53%), Positives = 316/447 (70%), Gaps = 8/447 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +K+YGCQMNVYDS RM D+ GYE + D ADL++LNTCHIREKAAEKVYS + Sbjct: 2 KKLHIKTYGCQMNVYDSERMIDILRPLGYEVSDVADGADLVLLNTCHIREKAAEKVYSEI 61 Query: 85 GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 GR++ L+ + G G + + VAGCVAQAEG EI+ R+P V++V+GPQ Y++LPEL+ R Sbjct: 62 GRLKELRGEKEARGEGRMTIAVAGCVAQAEGIEIMHRAPAVDLVIGPQAYHQLPELIART 121 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRK-RGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 K + D++ E KF+ L+ +R G TAFLT+QEGCDKFCTFCVVPYTRG Sbjct: 122 HRAKGERLAADFAPEAKFDALT-----SDRTVTGPTAFLTVQEGCDKFCTFCVVPYTRGA 176 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ ++DEA+ L GV E+TLLGQNVNA+ G G DG+ T + L+Y+L++I G+ Sbjct: 177 EWSRPVAAILDEAQALAAKGVRELTLLGQNVNAFNGVGSDGQPSTLAKLMYALADIPGID 236 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLRYTTSHP DM D LI AH DL MPYLHLPVQSGSD+IL++MNR+H Y ++ R Sbjct: 237 RLRYTTSHPNDMGDDLIAAHRDLGAAMPYLHLPVQSGSDKILRAMNRKHGRQAYFDLVAR 296 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ RPD+A+S DFIVGFPGETD DF T+DLV ++GYA AF+FKYSPR GTP ++M Q Sbjct: 297 IKAARPDLALSGDFIVGFPGETDKDFEDTLDLVRQVGYASAFTFKYSPRPGTPAASMPNQ 356 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V E V ERL L + EQQ +F VG+ +++L EK G+ + +GRSP+LQSV + Sbjct: 357 VPEAVMDERLQTLNALIIEQQQAFKATLVGKTLDILFEKPGRRDNQAIGRSPYLQSVYVE 416 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 H IG I+ VRI V ++L G L+ Sbjct: 417 DARHLIGQIVPVRIVAVGNNSLQGALL 443 >gi|229890666|sp|Q5LLM0|MIAB_SILPO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 439 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 243/445 (54%), Positives = 316/445 (71%), Gaps = 9/445 (2%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ F+K+YGCQMNVYDS RM + QGY S +DAD+I+LNTCHIREKAAEKVYS Sbjct: 4 PKKLFIKTYGCQMNVYDSERMAEALGGQGYVETQSAEDADMILLNTCHIREKAAEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL + Sbjct: 64 LGRFKGLKAAKP----DLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPELEAKT 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R G++ +DTD+ EDKFE+L G KRG TAFLT+QEGCDKFC FCVVPYTRG E+ Sbjct: 120 RAGEKALDTDFPEEDKFEKLK---GRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++ EA +L++ GV EITLLGQNVNA+ G G +G+ T + L++ L +I GL R+ Sbjct: 177 SRPADRILREANELVERGVREITLLGQNVNAYHGAGPNGD-MTLAGLIWELDKIDGLERI 235 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP DM+D LI+AHG LMPYLHLPVQ+GSD+ILK MNR HTA Y ++I+RIR Sbjct: 236 RFTTSHPNDMADDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRSHTAESYLRLIERIR 295 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + RPDI +S DFIVGFP ET+ DF+ T+DLV+++ Y A+SFKYS R GTP + QVD Sbjct: 296 AARPDIVMSGDFIVGFPEETEADFQDTLDLVEQVRYGYAYSFKYSTRPGTPAAERA-QVD 354 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 +RL LQ + Q D VG+ + VL EK G++ G++VG+S +L +V + Sbjct: 355 PAEADDRLQRLQAVITRHQREIQDGMVGREVSVLFEKPGRQPGQMVGKSEYLHAVHVQDP 414 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 G I +VRI ++L GEL Sbjct: 415 GLEAGQIARVRIVASGANSLAGELA 439 >gi|56708793|ref|YP_164834.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ruegeria pomeroyi DSS-3] gi|56680478|gb|AAV97143.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria pomeroyi DSS-3] Length = 462 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 243/445 (54%), Positives = 316/445 (71%), Gaps = 9/445 (2%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ F+K+YGCQMNVYDS RM + QGY S +DAD+I+LNTCHIREKAAEKVYS Sbjct: 27 PKKLFIKTYGCQMNVYDSERMAEALGGQGYVETQSAEDADMILLNTCHIREKAAEKVYSE 86 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL + Sbjct: 87 LGRFKGLKAAKP----DLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPELEAKT 142 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R G++ +DTD+ EDKFE+L G KRG TAFLT+QEGCDKFC FCVVPYTRG E+ Sbjct: 143 RAGEKALDTDFPEEDKFEKLK---GRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEV 199 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++ EA +L++ GV EITLLGQNVNA+ G G +G+ T + L++ L +I GL R+ Sbjct: 200 SRPADRILREANELVERGVREITLLGQNVNAYHGAGPNGD-MTLAGLIWELDKIDGLERI 258 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP DM+D LI+AHG LMPYLHLPVQ+GSD+ILK MNR HTA Y ++I+RIR Sbjct: 259 RFTTSHPNDMADDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRSHTAESYLRLIERIR 318 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + RPDI +S DFIVGFP ET+ DF+ T+DLV+++ Y A+SFKYS R GTP + QVD Sbjct: 319 AARPDIVMSGDFIVGFPEETEADFQDTLDLVEQVRYGYAYSFKYSTRPGTPAAERA-QVD 377 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 +RL LQ + Q D VG+ + VL EK G++ G++VG+S +L +V + Sbjct: 378 PAEADDRLQRLQAVITRHQREIQDGMVGREVSVLFEKPGRQPGQMVGKSEYLHAVHVQDP 437 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 G I +VRI ++L GEL Sbjct: 438 GLEAGQIARVRIVASGANSLAGELA 462 >gi|77465601|ref|YP_355104.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides 2.4.1] gi|123757716|sp|Q3IW81|MIAB_RHOS4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|77390019|gb|ABA81203.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides 2.4.1] Length = 436 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 251/446 (56%), Positives = 320/446 (71%), Gaps = 22/446 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM + ++GY ++AD+++LNTCHIREKAAEKVYS L Sbjct: 5 RKLFIKTYGCQMNVYDSERMAEALGAKGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R LK ++ DL + VAGCVAQAEGEEIL+R P+V++VVGPQ+Y+RLP++LER Sbjct: 65 GRLRPLKTAKP----DLKIGVAGCVAQAEGEEILKRMPLVDLVVGPQSYHRLPDMLERTE 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G RVVDTD+ EDKF+ L RK RG AFLT+QEGCDKFC FCVVPYTRG E Sbjct: 121 GGARVVDTDFPEEDKFDHLP------ERKATRGPAAFLTVQEGCDKFCAFCVVPYTRGAE 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSDLLYSLSEIKGL 260 +SR ++++ EAR L++ GV EITLLGQNVNAW G+GL G L+ L+ I GL Sbjct: 175 VSRPFARLMAEARGLVERGVREITLLGQNVNAWSNDGRGLGG-------LIRELARIDGL 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLRYTTSHP DM+D LI+AHG LMPYLHLPVQSGSDRILK+MNR+HTA Y ++I+ Sbjct: 228 ERLRYTTSHPNDMADDLIEAHGAEPKLMPYLHLPVQSGSDRILKAMNRKHTAEHYLRLIE 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR+ RPDI ++SDFIVGFPGET+ DF AT+DL+ +G+ AFSFKYS R GTP + E Sbjct: 288 RIRAARPDILLTSDFIVGFPGETEADFEATLDLIRAVGFGSAFSFKYSARPGTPAAEKPE 347 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 E A RL LQ + EQQ + A VG+ + VL EK G+ G++VG+S L +V + Sbjct: 348 LPAEVCDA-RLQRLQALVTEQQRAAQMAMVGREVGVLYEKAGRLPGQMVGKSDHLHAVHV 406 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466 K +GD+++VRIT ++L GE Sbjct: 407 EDKAGQVGDLVRVRITASAPNSLAGE 432 >gi|229890684|sp|Q5FPF1|MIAB_GLUOX RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 475 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 242/448 (54%), Positives = 318/448 (70%), Gaps = 3/448 (0%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ V ++GCQMNVYDS RM D+ GY V +DAD+++LNTCHIRE+A EKV+S Sbjct: 22 APRGLHVITWGCQMNVYDSARMADVLRPLGYGPVERPEDADMVILNTCHIRERATEKVFS 81 Query: 83 FLGRIRNLKNSRIKEGGD-LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 LGR+R +++ R+ G D ++ VAGCVAQAEGE IL R+P V++V+GPQTY++LPE++ Sbjct: 82 ELGRLRKIRDERMSNGADRTIIAVAGCVAQAEGEVILTRAPYVDLVLGPQTYHKLPEMVA 141 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 RA ++TD+ VE KF+ L D + +TAFLTIQEGCDKFC+FCVVPYTRG Sbjct: 142 RAARAGGAVIETDFPVEQKFDFLP-TDAAPQTQGNLTAFLTIQEGCDKFCSFCVVPYTRG 200 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR ++ V+ EAR++ ++GV EITLLGQNVNA+ G G T + L+ L++I GL Sbjct: 201 AETSRPVASVLAEARRMAESGVREITLLGQNVNAYHGDDGKGGSETLAGLVEQLAQIPGL 260 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RY TSHPRD+ LI AH D LMP+LHLPVQSGSDRILK+MNR HTA EYR+ + Sbjct: 261 GRIRYMTSHPRDVDQSLIDAHRDNPALMPFLHLPVQSGSDRILKAMNRGHTADEYRESVR 320 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R RPD+A+SSDFIVG PGET++DF ATM LV IG+A A+SFKYSPR GTP + Sbjct: 321 KLREARPDLALSSDFIVGHPGETEEDFEATMQLVRDIGFAMAYSFKYSPRPGTPAAGQPM 380 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 QV E+VK RL LQ LREQQ +FN VG + E+L+ G++ G++ GRSP+LQ V Sbjct: 381 QVPEDVKDRRLAELQALLREQQDAFNADMVGTVQEILVTNRGRKPGQIAGRSPYLQPVHF 440 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + +H IG +KV IT + ++L G L+ Sbjct: 441 DGPDHLIGSTVKVAITTRRTNSLGGTLI 468 >gi|51473976|ref|YP_067733.1| tRNA-methylthiotransferase (MiaB protein) [Rickettsia typhi str. Wilmington] gi|81389933|sp|Q68VU1|MIAB_RICTY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|51460288|gb|AAU04251.1| tRNA-methylthiotransferase (MiaB protein) [Rickettsia typhi str. Wilmington] Length = 445 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 235/447 (52%), Positives = 331/447 (74%), Gaps = 7/447 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMNVYDS++++D+ + GYE + +AD+I+LNTCHIREKAAEK YS L Sbjct: 3 KKLYIKTYGCQMNVYDSVKIQDLLYPFGYESTEDIKEADIIILNTCHIREKAAEKTYSEL 62 Query: 85 GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 GRI+ L+N+R +EG ++VVAGCVAQAEGE I R+P V++VVGPQ+YY LPEL+ + Sbjct: 63 GRIKKLQNTRKQEGLNPAIIVVAGCVAQAEGEVIFTRTPYVDIVVGPQSYYNLPELISKV 122 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K ++D D+ E KF+ L + Y + G ++F+++QEGCDKFCTFCVVPYTRG E Sbjct: 123 VRHEKHLIDLDFVEEAKFDNLP--EQLYTQ--GASSFISVQEGCDKFCTFCVVPYTRGAE 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SRS+ QV E+ K++ N EI LLGQNVNA+ GKG + T +DLL L++I L R Sbjct: 179 FSRSVEQVYRESLKVVSNDTKEIILLGQNVNAYHGKGPKDKIFTLADLLKHLAQIPNLER 238 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LRY TSHP DM+D LIK HG LMP+LHLPVQSGS++ILK+MNR+H Y II+R+ Sbjct: 239 LRYMTSHPIDMTDDLIKLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDRDYYFNIINRL 298 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R R DI +SSDFIVGFPGET+ DF T+DLV ++ Y Q +SFKYSPR GTPG+ +Q+ Sbjct: 299 REARSDIVLSSDFIVGFPGETEKDFEDTLDLVQRVKYGQCYSFKYSPRPGTPGAIRTDQI 358 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E++K++RL LQK+L QQ++FN++CVG ++VL ++ GK + +++G++P++QSV +++ Sbjct: 359 PEHIKSKRLTILQKELATQQLAFNESCVGSTMKVLFDRDGKFEDQIIGKTPYMQSVYIHN 418 Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468 N + +G I+ V IT +++L GE++ Sbjct: 419 PNKSLLGKIVDVIITKAALNSLTGEIL 445 >gi|326386707|ref|ZP_08208328.1| tRNA-i(6)A37 modification enzyme MiaB [Novosphingobium nitrogenifigens DSM 19370] gi|326208760|gb|EGD59556.1| tRNA-i(6)A37 modification enzyme MiaB [Novosphingobium nitrogenifigens DSM 19370] Length = 445 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 237/443 (53%), Positives = 310/443 (69%), Gaps = 12/443 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ F VKS+GCQMNVYD RM ++ +QG V+ + ADL+VLNTCHIREKA EKVYS Sbjct: 6 TPRTFHVKSFGCQMNVYDGERMAELLAAQGMTAVDEREAADLVVLNTCHIREKATEKVYS 65 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +GR+R ++G + L+ VAGCVAQAEGEEI+ R+P V VVVGPQ Y+RLP+++ Sbjct: 66 DIGRLRR------EDGSNPLIAVAGCVAQAEGEEIMTRAPQVRVVVGPQAYHRLPDMVAA 119 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A G R +TD E KF L RK G +AFLTIQEGCDKFCT+CVVPYTRG E Sbjct: 120 AASGTRETETDMPAEAKFAALP-----QRRKSGPSAFLTIQEGCDKFCTYCVVPYTRGAE 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR + +V+EAR L++ G EITLLGQNVNAW G+ G + L L+ + L R Sbjct: 175 ISRPYADLVEEARLLVEGGAREITLLGQNVNAWHGEDDKGRTIGLAGLAAELARLPDLAR 234 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP DM D LI+AHG D LMP+LHLPVQSG+DR+LK+MNR H+A Y +II+R+ Sbjct: 235 IRYTTSHPADMDDALIEAHGTNDKLMPFLHLPVQSGNDRVLKAMNRSHSAESYLKIIERV 294 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPDIA+S DFIVGFPGET+ +F T+ L+D YAQAFSFKYSPR GTP + M +Q+ Sbjct: 295 RAARPDIALSGDFIVGFPGETEAEFADTLALIDATRYAQAFSFKYSPRPGTPAATMDDQI 354 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 + +RL LQ + Q++FN A VG+ +VLIE+ G++ G+ +G+SPWLQSV Sbjct: 355 AAEIMDDRLKRLQTAITRDQLAFNRASVGKRCQVLIERRGRQPGQWLGKSPWLQSVHFTD 414 Query: 443 KNHNIGDIIKVRITDVKISTLYG 465 + IGD+++V + + +++ G Sbjct: 415 EA-AIGDLVEVELIEAGPNSIAG 436 >gi|157826266|ref|YP_001493986.1| hypothetical protein A1C_06245 [Rickettsia akari str. Hartford] gi|229890630|sp|A8GQ03|MIAB_RICAH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|157800224|gb|ABV75478.1| hypothetical protein A1C_06245 [Rickettsia akari str. Hartford] Length = 445 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 235/447 (52%), Positives = 332/447 (74%), Gaps = 7/447 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++K+YGCQMNVYDS++M+D+ + GYE ++++AD+I+LNTCHIREKAAEK YS L Sbjct: 3 KNLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYSEL 62 Query: 85 GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 GRI+ L+++R K+G ++VVAGCVAQAEGEEI R+P V++VVGPQ+YY LPEL+ + Sbjct: 63 GRIKKLQDTRKKQGLNSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKI 122 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K ++D D+ E KF+ L + Y +G ++F+++QEGCDKFCTFCVVPYTRG E Sbjct: 123 VRHAKHLIDLDFVEEAKFDNLP--EQLY--PQGASSFISVQEGCDKFCTFCVVPYTRGAE 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR++ QV EA +++ G EI LLGQNVNA+ KG + + +DLL L++I L R Sbjct: 179 FSRNVEQVYREALQVVSGGAKEIMLLGQNVNAYNWKGSADKIFSLADLLKHLAQIPNLER 238 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LRY TSHP DM+D LI+ HG LMP+LHLPVQSGS++ILK+MNR+H Y II+R+ Sbjct: 239 LRYMTSHPIDMTDDLIQLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIINRL 298 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI +SSDFIVGFPGETD+DF T+DLV ++ Y Q +SFKYSPR GTPG+ +Q+ Sbjct: 299 REARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQI 358 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E++K+ERL LQK+L +QQ++ N++CVG I+VL ++ GK +++G++ ++QSV + + Sbjct: 359 PEHIKSERLTILQKELMDQQLACNESCVGSTIKVLFDRSGKFDDQIIGKTIYMQSVYIQN 418 Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468 N + +G II V+IT +++L GE++ Sbjct: 419 PNKSLLGKIIDVKITKASLNSLTGEIL 445 >gi|15604640|ref|NP_221158.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rickettsia prowazekii str. Madrid E] gi|6226397|sp|Q9ZCE8|MIAB_RICPR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|3861335|emb|CAA15234.1| unknown [Rickettsia prowazekii] gi|292572459|gb|ADE30374.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rickettsia prowazekii Rp22] Length = 445 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 235/447 (52%), Positives = 330/447 (73%), Gaps = 7/447 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMNVYDS++++D+ + GYE + +AD+I+LNTCHIREKAAEK YS L Sbjct: 3 KKLYIKTYGCQMNVYDSVKIQDLLYPFGYESTEDIKEADIIILNTCHIREKAAEKTYSEL 62 Query: 85 GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 GRI+ L+N+R +EG ++VVAGCVAQAEGEEI R+P V++VVGPQ+YY LPEL+ + Sbjct: 63 GRIKKLQNTRKQEGLNPAIIVVAGCVAQAEGEEIFSRTPYVDIVVGPQSYYNLPELISKV 122 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K+++D D+ E KF+ L + Y +G ++F+++QEGCDKFCTFCVVPYTRG E Sbjct: 123 VRHEKQLIDLDFVEEAKFDNLP--EQLY--PQGASSFISVQEGCDKFCTFCVVPYTRGAE 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SRS+ QV E+ K + N EI LLGQNVNA+ GKG + T +DLL L++I L R Sbjct: 179 FSRSVEQVYRESLKAVSNDAKEIILLGQNVNAYHGKGPKDKIFTLADLLKCLAQIPNLAR 238 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LRY TSHP DM+D LIK HG LMP+LHLPVQSGS++ILK+MNR+H Y II+R+ Sbjct: 239 LRYMTSHPIDMTDDLIKLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDRDYYFNIINRL 298 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R R DI +SSDFIVGFPGET+ DF T+DLV ++ Y Q +SFKYSPR GTPG+ +Q+ Sbjct: 299 REARSDIVLSSDFIVGFPGETEQDFEDTLDLVHRVKYGQCYSFKYSPRPGTPGAIRTDQI 358 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E++K++RL LQ++L QQ++FN +CVG + VL ++ GK + +++G++P++QSV +++ Sbjct: 359 PEHIKSKRLTILQQELATQQLAFNQSCVGSTMRVLFDRDGKFEDQIIGKTPYMQSVYIHN 418 Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468 N + +G I+ V IT +++L GE++ Sbjct: 419 PNKSLLGKIVDVIITKAALNSLTGEIL 445 >gi|296116295|ref|ZP_06834911.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gluconacetobacter hansenii ATCC 23769] gi|295977114|gb|EFG83876.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gluconacetobacter hansenii ATCC 23769] Length = 498 Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust. Identities = 244/443 (55%), Positives = 317/443 (71%), Gaps = 4/443 (0%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 V ++GCQMNVYDS RM D+ GYE V++ D AD+I+LNTCHIR++AAEKV+S LGR Sbjct: 53 LHVITWGCQMNVYDSERMTDVLRPLGYEAVDAPDRADMIILNTCHIRDRAAEKVFSELGR 112 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R +K +R + G ++ VAGCVAQAEG EIL R+P V++V+GPQTY+RLPE++ RA Sbjct: 113 LRLVKEARAQAGQQTVLAVAGCVAQAEGREILARAPYVDIVLGPQTYHRLPEMVARAARA 172 Query: 147 KR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V++TD+ VE KF+ L G AFLTIQEGCDKFC+FCVVPYTRG E SR Sbjct: 173 AGAVIETDFPVEQKFDFLPPE---REVPAGGAAFLTIQEGCDKFCSFCVVPYTRGAEASR 229 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ ++DEAR+L+ +GV EITLLGQNVNA+ G G DG + L L+ G+ R+RY Sbjct: 230 PVAAIMDEARRLVAHGVREITLLGQNVNAYHGDGPDGTTWGLARLTAELAGQVGVERIRY 289 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTSHPRDM D L+ AH + LMP+LHLPVQSGSDR+L +MNR HTA EYR ++ R+R+ Sbjct: 290 TTSHPRDMDDGLVAAHREQPALMPFLHLPVQSGSDRVLAAMNRGHTAQEYRDLVARLRTA 349 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RPD+A+SSDFIVG PGETD+DF TM L+ IG+AQA+SFKYSPR GTP SN QV E+ Sbjct: 350 RPDLALSSDFIVGHPGETDEDFEQTMQLIRDIGFAQAYSFKYSPRPGTPASNAGAQVPED 409 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 VK RL LQ LREQQ +FN A VGQ ++VL G++ G++ G+SP+LQ+V + + Sbjct: 410 VKDARLQRLQALLREQQDAFNAASVGQRVDVLFTGRGRKPGQISGKSPYLQAVHVEGPDS 469 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 IG + +V I + ++L G L Sbjct: 470 LIGQVAEVDIVKLHTNSLGGVLT 492 >gi|89069602|ref|ZP_01156941.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanicola granulosus HTCC2516] gi|89044800|gb|EAR50900.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanicola granulosus HTCC2516] Length = 437 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 248/448 (55%), Positives = 315/448 (70%), Gaps = 17/448 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ F+K+YGCQMNVYDS RM + +GY ++AD+I+LNTCHIREKAAEKVYS Sbjct: 5 APKKLFIKTYGCQMNVYDSERMAEALGGRGYVETQVAEEADMILLNTCHIREKAAEKVYS 64 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR++ LK E DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLP + Sbjct: 65 ELGRLKPLK----AEKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPAMDAA 120 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G + +DTD+ EDKF L+ +RG TAFLT+QEGCDKFC FCVVPYTRG E Sbjct: 121 LATGGKALDTDFPAEDKFSGLAARP---RAQRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 177 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGL 260 +SR +VVDEAR L++ GV EITLLGQNVNA+ G GL G L+ +L+ I GL Sbjct: 178 VSRPAERVVDEARALVEAGVREITLLGQNVNAYHGHEGGLAG-------LVRTLAAIDGL 230 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP DM D LI AHGD LMPYLHLPVQSGSDRILK+MNR+HTA Y ++I+ Sbjct: 231 ERIRYTTSHPNDMDDALIAAHGDCPELMPYLHLPVQSGSDRILKAMNRKHTAEAYLRLIE 290 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R RPD+A+S DFIVGFPGET+ DF TM LV+ +GYAQA+SFKYS R GTP + Sbjct: 291 RLRDARPDLALSGDFIVGFPGETEADFADTMGLVEAVGYAQAYSFKYSTRPGTPAAEK-P 349 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 Q+ +V ++RL LQ L+ QQ + +A VG+ + VL EK G+ G++VGRS L +V + Sbjct: 350 QLPGDVMSDRLARLQALLKAQQTAAQEAMVGREVGVLFEKPGRLPGQMVGRSDHLCAVHV 409 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + G+I +VRIT ++L G L Sbjct: 410 EAPEALKGEIARVRITASAPNSLAGTLA 437 >gi|126464040|ref|YP_001045153.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodobacter sphaeroides ATCC 17029] gi|229890628|sp|A3PPW5|MIAB_RHOS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|126105851|gb|ABN78381.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides ATCC 17029] Length = 436 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 250/446 (56%), Positives = 320/446 (71%), Gaps = 22/446 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM + ++GY ++AD+++LNTCHIREKAAEKVYS L Sbjct: 5 RKLFIKTYGCQMNVYDSERMAEALGAKGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R LK ++ DL + VAGCVAQAEGEEIL+R P+V++VVGPQ+Y+RLP++L+R Sbjct: 65 GRLRPLKTAKP----DLKIGVAGCVAQAEGEEILKRMPLVDLVVGPQSYHRLPDMLDRTE 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G RVVDTD+ EDKF+ L RK RG AFLT+QEGCDKFC FCVVPYTRG E Sbjct: 121 GGARVVDTDFPEEDKFDHLP------ERKATRGPAAFLTVQEGCDKFCAFCVVPYTRGAE 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSDLLYSLSEIKGL 260 +SR ++++ EAR L++ GV EITLLGQNVNAW G+GL G L+ L+ I GL Sbjct: 175 VSRPFARLMAEARGLVERGVREITLLGQNVNAWSSDGRGLGG-------LIRELARIDGL 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLRYTTSHP DM+D LI+AHG LMPYLHLPVQSGSDRILK+MNR+HTA Y ++I+ Sbjct: 228 ERLRYTTSHPNDMADDLIEAHGAEPKLMPYLHLPVQSGSDRILKAMNRKHTAEHYLRLIE 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR+ RPDI ++SDFIVGFPGET+ DF AT+DL+ +G+ AFSFKYS R GTP + E Sbjct: 288 RIRAARPDILLTSDFIVGFPGETEADFEATLDLIRAVGFGSAFSFKYSARPGTPAAEKPE 347 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 E A RL LQ + EQQ + A VG+ + VL EK G+ G++VG+S L +V + Sbjct: 348 LPGEVCDA-RLQRLQALVTEQQRAAQMAMVGREVGVLYEKAGRLPGQMVGKSDHLHAVHV 406 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466 K +GD+++VRIT ++L GE Sbjct: 407 EDKAGRVGDLVRVRITASAPNSLAGE 432 >gi|221369608|ref|YP_002520704.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodobacter sphaeroides KD131] gi|221162660|gb|ACM03631.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacter sphaeroides KD131] Length = 436 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 250/446 (56%), Positives = 320/446 (71%), Gaps = 22/446 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM + ++GY ++AD+++LNTCHIREKAAEKVYS L Sbjct: 5 RKLFIKTYGCQMNVYDSERMAEALGAKGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R LK ++ DL + VAGCVAQAEGEEIL+R P+V++VVGPQ+Y+RLP++L+R Sbjct: 65 GRLRPLKTAKP----DLKIGVAGCVAQAEGEEILKRMPLVDLVVGPQSYHRLPDMLDRTE 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G RVVDTD+ EDKF+ L RK RG AFLT+QEGCDKFC FCVVPYTRG E Sbjct: 121 GGARVVDTDFPEEDKFDHLP------ERKATRGPAAFLTVQEGCDKFCAFCVVPYTRGAE 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSDLLYSLSEIKGL 260 +SR ++++ EAR L++ GV EITLLGQNVNAW G+GL G L+ L+ I GL Sbjct: 175 VSRPFARLMAEARGLVERGVREITLLGQNVNAWSSDGRGLGG-------LIRELARIDGL 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLRYTTSHP DM+D LI+AHG LMPYLHLPVQSGSDRILK+MNR+HTA Y ++I+ Sbjct: 228 ERLRYTTSHPNDMADDLIEAHGAEPKLMPYLHLPVQSGSDRILKAMNRKHTAEHYLRLIE 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR+ RPDI ++SDFIVGFPGET+ DF AT+DL+ +G+ AFSFKYS R GTP + E Sbjct: 288 RIRAARPDILLTSDFIVGFPGETEADFEATLDLIRAVGFGSAFSFKYSARPGTPAAEKPE 347 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 E A RL LQ + EQQ + A VG+ + VL EK G+ G++VG+S L +V + Sbjct: 348 LPAEVCDA-RLQRLQALVTEQQRAAQVAMVGREVGVLYEKAGRLPGQMVGKSDHLHAVHV 406 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466 K +GD+++VRIT ++L GE Sbjct: 407 EDKAGRVGDLVRVRITASAPNSLAGE 432 >gi|114770160|ref|ZP_01447698.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [alpha proteobacterium HTCC2255] gi|114548997|gb|EAU51880.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [alpha proteobacterium HTCC2255] Length = 442 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 237/444 (53%), Positives = 315/444 (70%), Gaps = 8/444 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++K++GCQMNVYDS RM + GY V+S ++AD+I+LNTCHIREKAAEK+YS L Sbjct: 5 KNLYIKTFGCQMNVYDSERMATSLGADGYNEVSSPEEADMILLNTCHIREKAAEKIYSDL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR ++LK + DL + V GCVAQAEGEEI++R P+V++VVGPQ Y+RLP + + Sbjct: 65 GRFKSLK----AKNPDLKIGVTGCVAQAEGEEIIKRQPLVDIVVGPQAYHRLPAMAKSIE 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 GK+VVDTD+ EDKFE L KR +AFLT+QEGCDKFC FCVVP+TRG E+S Sbjct: 121 NGKKVVDTDFPEEDKFEHLP---AAPKTKRAPSAFLTVQEGCDKFCAFCVVPFTRGAEVS 177 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + Q+++EAR L++ GV +ITLLGQNVNA+ G G+ L+ LS+I+ L R+R Sbjct: 178 RPVLQIINEARDLVERGVRDITLLGQNVNAYHGAMKSGD-ANLPQLIKELSKIEELKRIR 236 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP DM+ LI AHG+++ LMPYLHLPVQSGSD+ILK MNR+HTA Y ++I+ +R Sbjct: 237 FTTSHPNDMTQELIDAHGEMEKLMPYLHLPVQSGSDKILKGMNRKHTAKSYLEVIENLRV 296 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDIA+S DFIVGFPGETD+DF T++LV ++ YAQA+SFKYS R GTP + QV E Sbjct: 297 ARPDIALSGDFIVGFPGETDEDFEQTLELVREVKYAQAYSFKYSTRPGTPAAENKNQVPE 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +K+ERL LQ L + Q F VG+++ VL+E+ G+ G+LVGRS +L V + Sbjct: 357 EIKSERLSRLQALLSQHQKEFMGTMVGKVLPVLLERPGRLDGQLVGRSEYLHGVHASIDQ 416 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IGDI+ +RI ++L E V Sbjct: 417 AQIGDIVNLRILGADTNSLRAEFV 440 >gi|126730915|ref|ZP_01746724.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sagittula stellata E-37] gi|126708631|gb|EBA07688.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sagittula stellata E-37] Length = 435 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 247/447 (55%), Positives = 317/447 (70%), Gaps = 17/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM + QGY + DDAD+I+LNTCHIREKAAEKVYS L Sbjct: 3 RKLFIKTYGCQMNVYDSERMAEAMGGQGYVVTETPDDADMILLNTCHIREKAAEKVYSEL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + LK ++ DL + VAGCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPEL +AR Sbjct: 63 GRYKGLKAAKP----DLKIGVAGCVAQAEGEEIMRRQPMVDLVVGPQSYHRLPELEAKAR 118 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + +DTD+ EDKFE L+ KRG TAFLT+QEGCDKFC FCVVPYTRG E+S Sbjct: 119 TGAKALDTDFPEEDKFEHLTARP---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAELS 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLVR 262 R +V+ EAR L++ GV EITLLGQNVNA+ G +GL G L+ L I GL R Sbjct: 176 RPAERVMREARDLVERGVREITLLGQNVNAYHGHERGLAG-------LIRELETIDGLAR 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP DM D LI AHG+ + LMPYLHLPVQ+GSDRILK MNR+HTA +Y ++I+R+ Sbjct: 229 IRFTTSHPNDMDDALIAAHGECEKLMPYLHLPVQAGSDRILKRMNRQHTAEQYLRLIERL 288 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPD+ +S DFIVGFP ET+ DFR T+ L++ + Y AFSFKYS R GTP + QV Sbjct: 289 RAARPDLHLSGDFIVGFPEETEADFRDTLALIEAVEYGSAFSFKYSERPGTPAAERA-QV 347 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E+ K +RL LQ L +QQ + DA VG+ + VL EK G+ G++VG+S +L +V + + Sbjct: 348 PEDEKDDRLQRLQALLTKQQRALQDAMVGREVRVLFEKPGRLPGQMVGKSEYLHAVHVEA 407 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 + GDI VRI ++L G L+ Sbjct: 408 QGIGAGDIAPVRIESSGPNSLGGVLMA 434 >gi|23015405|ref|ZP_00055182.1| COG0621: 2-methylthioadenine synthetase [Magnetospirillum magnetotacticum MS-1] Length = 425 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 234/429 (54%), Positives = 312/429 (72%), Gaps = 10/429 (2%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNVYDS RM D+ GY + ++AD+++LNTCHIREKAAEKV+S LGR+R +K +R Sbjct: 1 MNVYDSARMADVLAPLGYGPADHAEEADMVILNTCHIREKAAEKVFSELGRLRKIKTARA 60 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTDY 154 + G +++ VAGCVAQAEGEEILRR+P V++V+GPQTY+RLPE++ + AR G V+DT++ Sbjct: 61 EAGQRMILAVAGCVAQAEGEEILRRAPFVDIVLGPQTYHRLPEMVAQAARAGGAVLDTEF 120 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 E KF+ L +G +AFL++QEGCDKFCTFCVVPYTRG E SR + ++ EA Sbjct: 121 PAEPKFDFLP-----EPLAQGSSAFLSVQEGCDKFCTFCVVPYTRGAEYSRPATAILAEA 175 Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274 KL GV EITLLGQNVN W G E L+ +L+E+ G+ RLRYTTSHPRDM Sbjct: 176 AKLAQGGVREITLLGQNVNGWHGD----EGWGLGRLIRALAEVPGVERLRYTTSHPRDMD 231 Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334 D LI+AH +L LMP+LHLPVQSGSDRIL +MNR H Y +++DR++SV PD+A+SSD Sbjct: 232 DELIRAHAELPQLMPFLHLPVQSGSDRILAAMNRGHDRDTYLRLVDRLKSVCPDLALSSD 291 Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394 FIVGFPGE+D DF A+MDL+ ++G+ Q +SFKYSPR GTP + M +QV E VK ERL + Sbjct: 292 FIVGFPGESDADFEASMDLIRQVGFVQTYSFKYSPRPGTPAAAMDQQVPEPVKDERLAQV 351 Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVR 454 Q L EQ FN +CVG+ + VL+++ G+ G+L+GRSP++Q V + + H IG ++ +R Sbjct: 352 QALLMEQTTRFNHSCVGREMRVLLDRPGRHAGQLLGRSPYMQPVHVKAAAHLIGTVVNLR 411 Query: 455 ITDVKISTL 463 IT V ++L Sbjct: 412 ITKVHPNSL 420 >gi|56550973|ref|YP_161812.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Zymomonas mobilis subsp. mobilis ZM4] gi|260753353|ref|YP_003226246.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|81355650|sp|Q5NRF3|MIAB_ZYMMO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|56542547|gb|AAV88701.1| RNA modification enzyme, MiaB family [Zymomonas mobilis subsp. mobilis ZM4] gi|258552716|gb|ACV75662.1| RNA modification enzyme, MiaB family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 445 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 236/444 (53%), Positives = 322/444 (72%), Gaps = 13/444 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F++KS+GCQMN YD RM ++ SQG + ADL+VLNTCHIREKAAEKVYS + Sbjct: 7 KHFYIKSFGCQMNSYDGERMSELLESQGMKAAEEAATADLVVLNTCHIREKAAEKVYSEI 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +G ++ +AGCVAQAEG E+L R+ +V++VVGPQ Y+ LPEL+E+A Sbjct: 67 GRLRR------PDGSSPMIALAGCVAQAEGAEVLARTKMVDIVVGPQAYHHLPELIEKAA 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 GK VVD D +E KF+ L R+ G +AFLT+QEGCDKFCT+CVVPYTRG E+S Sbjct: 121 SGK-VVDIDMPLESKFDALP-----ERRQVGASAFLTVQEGCDKFCTYCVVPYTRGAEVS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R S++V EA L+D G EITLLGQNVNAW G+ G L+ +L++I GL R+R Sbjct: 175 RPWSRIVKEAHALVDKGAREITLLGQNVNAWTGEDEAGRSQGLDGLIRALAKIDGLERIR 234 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHP DM++ LI+AHG++D LMP+LHLPVQSGS+RILK+MNR HTA Y +++R++ Sbjct: 235 YTTSHPNDMTEGLIEAHGEIDKLMPFLHLPVQSGSNRILKAMNRAHTAESYLTLMNRLKE 294 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 VRPDIA+S DFIVGFPGE+++DF+AT+DL+ ++GY+ AFSF YSPR GTP ++M Q+D Sbjct: 295 VRPDIALSGDFIVGFPGESEEDFQATLDLISEVGYSLAFSFAYSPRPGTPAADMDNQIDP 354 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + ERL LQ L +QQ FN +G+ VLIE+ GK+ +++G+SPWLQSV++ + Sbjct: 355 EISRERLQRLQALLNQQQFDFNQQTIGRKATVLIERKGKKADQMIGKSPWLQSVIIEAPV 414 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IGD+++V +TD +++ G+ + Sbjct: 415 -AIGDLVEVTLTDAGPNSVKGQFL 437 >gi|85374526|ref|YP_458588.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Erythrobacter litoralis HTCC2594] gi|123409590|sp|Q2N950|MIAB_ERYLH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|84787609|gb|ABC63791.1| 2-methylthioadenine synthetase [Erythrobacter litoralis HTCC2594] Length = 446 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 235/445 (52%), Positives = 310/445 (69%), Gaps = 10/445 (2%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ + VKS+GCQMNVYD RM +M +G E +DADL+VLNTCHIREKA +KVYS Sbjct: 7 PKTYRVKSFGCQMNVYDGERMAEMLDEKGIEPAPEGEDADLVVLNTCHIREKAVDKVYSD 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +GR+ K ++ VAGCVAQAEGEEI+ R+P V++VVGPQ Y+RLP +++ A Sbjct: 67 IGRLTKGKTQTKAP----MIAVAGCVAQAEGEEIMARAPAVSMVVGPQAYHRLPGMIDAA 122 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GKR DTD + KF L RK +AFLTIQEGCDKFCT+CVVPYTRG EI Sbjct: 123 VAGKRSTDTDMPADAKFAALP-----KRRKSAPSAFLTIQEGCDKFCTYCVVPYTRGAEI 177 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR S ++DEA+KL++ G EITLLGQNV+AW G+ G + L+ L++ L R+ Sbjct: 178 SRPFSALIDEAKKLVEAGAKEITLLGQNVSAWTGEDAKGRALGMAGLIRELAKDPDLKRV 237 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP DM D LI HG+++ LMPYLHLPVQSG+DR+LK+MNR HTA Y ++++R R Sbjct: 238 RYTTSHPADMDDELIATHGEVEKLMPYLHLPVQSGNDRVLKAMNRSHTAESYLRLLERFR 297 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + RPD+A+S DFIVGFPGET+ +F T+ +VD++ YAQA+SFKYSPR GTP + M QV Sbjct: 298 AARPDLALSGDFIVGFPGETEAEFEDTLKIVDEVRYAQAYSFKYSPRPGTPAATMERQVP 357 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + V ERL LQ L Q +FN VG+ EVL+E+ GK G+ +G+SPWLQSV + Sbjct: 358 KEVMDERLQRLQAALNRDQAAFNAGSVGRTCEVLVERTGKHPGQWLGKSPWLQSVWFDG- 416 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 + IGD+++V + + ++L G+L+ Sbjct: 417 DVAIGDLVQVELVEAGPNSLAGQLL 441 >gi|84515221|ref|ZP_01002583.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Loktanella vestfoldensis SKA53] gi|84510504|gb|EAQ06959.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Loktanella vestfoldensis SKA53] Length = 436 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 241/448 (53%), Positives = 321/448 (71%), Gaps = 17/448 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ F+K+YGCQMNVYDS RM + QGY + + +DAD+I+LNTCHIREKAAEKVYS Sbjct: 3 APKKLFIKTYGCQMNVYDSERMAEALGGQGYVQTDHAEDADMILLNTCHIREKAAEKVYS 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR++ LK+++ DL + VAGCVAQAEG EI+RR P+V++VVGPQ+Y+RLP + Sbjct: 63 ELGRMKVLKDAKP----DLKIGVAGCVAQAEGAEIMRRQPMVDLVVGPQSYHRLPAMDAA 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G + +DTD+ +DKF+ L KRG TAFLT+QEGCDKFC FCVVPYTRG E Sbjct: 119 VQGGAKALDTDFPEDDKFKTLKTRS---KAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGL 260 +SR +++ EAR+L+D GV E+TLLGQNVNA+ G +GL G L+++L+EI GL Sbjct: 176 VSRPADRILREARELVDAGVRELTLLGQNVNAYHGHERGLAG-------LIWALTEIDGL 228 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP DM LI AHG + LMPYLHLPVQSGSDRILK+MNR+HTA Y ++ID Sbjct: 229 ERIRFTTSHPNDMDQALIDAHGTCEKLMPYLHLPVQSGSDRILKAMNRKHTAESYLRLID 288 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR+ RPDI +S DFIVGFPGETD DF T+ LV + Y QA+SFKYS R GTP + Sbjct: 289 RIRAARPDILLSGDFIVGFPGETDQDFEDTLQLVRDVHYGQAYSFKYSTRPGTPAAEK-P 347 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 Q+ ++V ERL LQ LR+QQ + +G+ ++VL EK G+E G+++G+S +L +V Sbjct: 348 QLPDDVMNERLQRLQALLRDQQQQTQASMIGREVKVLFEKAGREAGQMIGKSEYLHAVYA 407 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ +G + +VRI ++L GEL+ Sbjct: 408 DAPATVLGQVRRVRIVQDSANSLKGELI 435 >gi|83949580|ref|ZP_00958313.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius nubinhibens ISM] gi|83837479|gb|EAP76775.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius nubinhibens ISM] Length = 440 Score = 488 bits (1257), Expect = e-136, Method: Compositional matrix adjust. Identities = 241/444 (54%), Positives = 318/444 (71%), Gaps = 8/444 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMNVYDS RM + QGY S ++AD+I+LNTCHIREKAAEKVYS L Sbjct: 5 KKLYIKTYGCQMNVYDSERMAEALGGQGYVETQSPEEADMILLNTCHIREKAAEKVYSEL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R LK ++ DL + VAGCVAQAEGEEI+RR P+V++VVGP +Y+RLPE+ E+ R Sbjct: 65 GRMRGLKEAKP----DLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPSSYHRLPEMEEKTR 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ + TD+ EDKF RL G +RG +AFL++QEGCDKFC FCVVPYTRG E S Sbjct: 121 QGQKALVTDFPEEDKFARLK---GRPKAQRGPSAFLSVQEGCDKFCAFCVVPYTRGAEYS 177 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + V+DEAR LI+ GV EITLLGQNVNA+ G+G DG + + L++ L ++ GL R+R Sbjct: 178 RPVKAVLDEARDLIERGVREITLLGQNVNAYHGEGPDGAEWGLARLIWELDKLDGLQRIR 237 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP DM LI+A G LMPYLHLPVQSGSDRILK MNR HTA Y ++++ IR+ Sbjct: 238 FTTSHPNDMDAALIEALGSCAKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLMEEIRA 297 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDI +S DFIVGFP ET++DF+AT+DLV+ + Y A+SFKYS R GTP + QV+E Sbjct: 298 ARPDIVLSGDFIVGFPEETEEDFQATLDLVEAVKYGYAYSFKYSTRPGTPAAERA-QVEE 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ + Q D VG+ + VL EK G+ +G++VG+S +L +V + Sbjct: 357 AVKTERLGRLQDLITRHQREIQDGMVGREMSVLFEKPGRFEGQMVGKSDYLHAVHVKDAL 416 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 +GD+ +VRI + ++L GEL+ Sbjct: 417 VAVGDLRRVRIVESMTNSLAGELI 440 >gi|254485983|ref|ZP_05099188.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. GAI101] gi|214042852|gb|EEB83490.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseobacter sp. GAI101] Length = 462 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 240/441 (54%), Positives = 311/441 (70%), Gaps = 9/441 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ F+K+YGCQMNVYDS RM + Y + DAD+I+LNTCHIREKAAEKVYS Sbjct: 26 APKKLFIKTYGCQMNVYDSERMAESL-GDAYVETKTAADADMILLNTCHIREKAAEKVYS 84 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR++ LK DL + VAGCVAQAEG EI+RR P V++VVGPQ+Y+RLP + R Sbjct: 85 ELGRLKPLKAL----NPDLKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLPAMEAR 140 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK +DTD+ EDKFE++ G R +AFLT+QEGCDKFC FCVVPYTRG E Sbjct: 141 VREGKTALDTDFPEEDKFEKMK---GRGKAARAPSAFLTVQEGCDKFCAFCVVPYTRGAE 197 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++V+ EA +L++ GV E+TLLGQNVNA+ G G +G T + L+ +++I GL R Sbjct: 198 VSRPATRVLAEACELVERGVREVTLLGQNVNAYHGVGPEGADYTLARLIREIAKIDGLER 257 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP DM D LI AHG++D LMPYLHLPVQSGSDRILK MNR HTA Y ++I+RI Sbjct: 258 IRYTTSHPNDMDDALIAAHGEVDKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLIERI 317 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI +S DFIVGFP ETD DF ATMDLV ++ Y A+SFKYS R GTP + V Sbjct: 318 RDARPDIVMSGDFIVGFPEETDADFEATMDLVREVKYGYAYSFKYSTRPGTPAAER-ALV 376 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 D V +RL LQ + Q + VG+ + VL+EK G++ G++VG+S +L SV +++ Sbjct: 377 DAAVADDRLQRLQALITGHQREIQTSMVGRDLSVLVEKSGRDAGQMVGKSEYLHSVHIDN 436 Query: 443 KNHNIGDIIKVRITDVKISTL 463 ++GD+++VRI D K ++L Sbjct: 437 ATASVGDVVRVRIVDAKTNSL 457 >gi|254452609|ref|ZP_05066046.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Octadecabacter antarcticus 238] gi|198267015|gb|EDY91285.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Octadecabacter antarcticus 238] Length = 443 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 240/446 (53%), Positives = 320/446 (71%), Gaps = 17/446 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ F+K+YGCQMNVYDS RM + +QGY + DAD+I+LNTCHIREKAAEK+YS Sbjct: 12 PKKLFIKTYGCQMNVYDSERMAESLGTQGYVTTDVAADADMILLNTCHIREKAAEKMYSE 71 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR++ LK + DL + VAGCVAQAEG EI+RR P+V++VVGPQ+Y+RLP + + Sbjct: 72 LGRLKPLKADKP----DLKIGVAGCVAQAEGAEIIRRQPMVDLVVGPQSYHRLPAMEQAV 127 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G++ +DTD+ +DKF+ L KRG TAFLT+QEGCDKFC FCVVPYTRG E Sbjct: 128 ARGEKALDTDFPEDDKFDTLK---SRSKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEF 184 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGLV 261 SR +++ EA +L++ GV EITLLGQNVNA+ G GL G L++ L ++ GL Sbjct: 185 SRPADRIIREAHELVEAGVREITLLGQNVNAYHGHAGGLAG-------LIWDLDKVDGLK 237 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP DM D LI AHG D LMPYLHLPVQSGSD++LK+MNR+HT +Y +I+R Sbjct: 238 RIRFTTSHPNDMDDALIDAHGTCDKLMPYLHLPVQSGSDKVLKAMNRKHTRDQYFALIER 297 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ RPD+ +S DFIVGFPGET+ DF TMDLV +GY QA+SFKYS R GTP + Q Sbjct: 298 IRAARPDLLLSGDFIVGFPGETEADFEDTMDLVRTVGYGQAYSFKYSTRPGTPAAER-AQ 356 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 VDE+VK ERL LQ L +QQ + + +G+ ++VL EK G+E G+++G+S +L +V + Sbjct: 357 VDEDVKLERLHRLQALLGDQQRAIQASMIGRTVKVLFEKKGRESGQMIGKSEYLHAVFAD 416 Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467 + + IGD+ KV+I + ++L GE+ Sbjct: 417 TTDVAIGDLRKVKIVKSESNSLGGEI 442 >gi|332561273|ref|ZP_08415591.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodobacter sphaeroides WS8N] gi|332275071|gb|EGJ20387.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodobacter sphaeroides WS8N] Length = 436 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 248/446 (55%), Positives = 318/446 (71%), Gaps = 22/446 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM + ++GY ++AD+++LNTCHIREKAAEKVYS L Sbjct: 5 RKLFIKTYGCQMNVYDSERMAEALGARGYVLTEVAEEADMVLLNTCHIREKAAEKVYSDL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R LK ++ DL + VAGCVAQAEGEEIL+R P+V++VVGPQ+Y+RLP++L+R Sbjct: 65 GRLRPLKTAKP----DLKIGVAGCVAQAEGEEILKRMPLVDLVVGPQSYHRLPDMLDRTE 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G RVVDTD+ EDKF+ L RK RG AFLT+QEGCDKFC FCVVPYTRG E Sbjct: 121 GGARVVDTDFPEEDKFDHLP------ERKATRGPAAFLTVQEGCDKFCAFCVVPYTRGAE 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSDLLYSLSEIKGL 260 +SR ++++ EAR L++ GV EITLLGQNVNAW G+GL G L+ L+ I GL Sbjct: 175 VSRPFARLMAEARGLVERGVREITLLGQNVNAWSSDGRGLGG-------LIRELARIDGL 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLRYTTSHP DM+D LI+AHG LMPYLHLPVQSGSDRILK+MNR+HTA Y ++I+ Sbjct: 228 ERLRYTTSHPNDMADDLIEAHGAEPKLMPYLHLPVQSGSDRILKAMNRKHTAEHYLRLIE 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR+ RPDI ++SDFIVGFPGET+ DF AT+DL+ +G+ AFSFKYS R GTP + E Sbjct: 288 RIRAARPDILLTSDFIVGFPGETEADFEATLDLIRAVGFGSAFSFKYSARPGTPAAEKPE 347 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 E A RL LQ + EQQ + A VG+ + VL EK G+ G++VG+S L +V + Sbjct: 348 LPTEVCDA-RLQRLQALVTEQQRAAQVAMVGREVGVLYEKAGRLPGQMVGKSDHLHAVHV 406 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466 +GD+++VRIT ++L E Sbjct: 407 EDPAGRVGDLVRVRITASAPNSLAAE 432 >gi|330994671|ref|ZP_08318594.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Gluconacetobacter sp. SXCC-1] gi|329758312|gb|EGG74833.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Gluconacetobacter sp. SXCC-1] Length = 468 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 245/456 (53%), Positives = 313/456 (68%), Gaps = 4/456 (0%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 V+Q + + + V ++GCQMNVYDS RM D+ GY V + DDAD+I+LNTCHIR Sbjct: 10 VAQPHTRTVSTRGLHVITWGCQMNVYDSERMTDVLRPLGYRAVGTPDDADMIILNTCHIR 69 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133 ++AAEKV+S LGR+R +K +R + G ++ VAGCVAQAEG EIL R+P V++V+GPQTY Sbjct: 70 DRAAEKVFSELGRLRKVKEARAERGAGTVLAVAGCVAQAEGHEILARAPYVDIVLGPQTY 129 Query: 134 YRLPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 +RLPE++ RA V++TD+ +E KF+ L G AFLTIQEGCDKFC+F Sbjct: 130 HRLPEMVARAARAAGAVIETDFPIEQKFDFLPADRAA---PAGGAAFLTIQEGCDKFCSF 186 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 CVVPYTRG E SR V+ EAR+L+ G EITLLGQNVNA+ G+G DG + L Sbjct: 187 CVVPYTRGAESSRPAVAVLAEARRLVAAGAREITLLGQNVNAYHGEGPDGATWGLARLAR 246 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L++ G+ R+RYTTSHPRDM D LI AH DL LMP+LHLPVQSGSDR+L +MNR HTA Sbjct: 247 VLADEVGVARIRYTTSHPRDMEDDLIAAHRDLPQLMPFLHLPVQSGSDRVLAAMNRGHTA 306 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 EYR ++DR+R+ RPD+A+SSDFIVG PGETD DF TM L+ IG+AQA+SFKYSPR G Sbjct: 307 DEYRVLVDRLRTARPDLALSSDFIVGHPGETDGDFADTMRLIRDIGFAQAYSFKYSPRPG 366 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 TP + +QV E+ K RL LQ LR QQ FNDA +G+ VL G++ G++ G+S Sbjct: 367 TPAAGAGQQVAESTKDARLQELQALLRVQQDEFNDATIGRSTPVLFTGRGRKPGQISGKS 426 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 PWLQ+V + IG I V I ++L G L Sbjct: 427 PWLQAVNVEGPESLIGRIASVDIRHRYTNSLGGVLT 462 >gi|149202109|ref|ZP_01879082.1| tRNA-i(6)A37 modification enzyme MiaB [Roseovarius sp. TM1035] gi|149144207|gb|EDM32238.1| tRNA-i(6)A37 modification enzyme MiaB [Roseovarius sp. TM1035] Length = 440 Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust. Identities = 245/444 (55%), Positives = 318/444 (71%), Gaps = 10/444 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMNVYDS RM + GY +AD+I+LNTCHIREKAAEKVYS L Sbjct: 5 KKLYIKTYGCQMNVYDSERMAEAMGGSGYVETQDPAEADMILLNTCHIREKAAEKVYSEL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR++ LK + DL + V GCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+ R R Sbjct: 65 GRMKQLKLDKP----DLKIGVTGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEARVR 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ +DT++ +EDKF+ L +RG TAFLT+QEGCDKFC FCVVPYTRG E+S Sbjct: 121 AGEKALDTEFPIEDKFDTLRHRP---KARRGPTAFLTVQEGCDKFCAFCVVPYTRGAEVS 177 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R S+V++EAR L++ GV EITLLGQNVNA+ G G +G + L+++LSEI GL R+R Sbjct: 178 RPASRVLEEARDLVERGVREITLLGQNVNAYHGAG-EGGDWGLARLVWALSEIDGLERIR 236 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP DM D LI AHG+ LMPYLHLPVQSGSDRILK MNR HTA Y ++I+RIR+ Sbjct: 237 FTTSHPNDMDDDLIAAHGECAKLMPYLHLPVQSGSDRILKRMNRSHTAESYLRLIERIRA 296 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDI +S DFIVGFP ETD DF+ATM+L++ + Y AFSFKYS R GTP + QV E Sbjct: 297 ARPDILLSGDFIVGFPEETDADFQATMELIEAVNYGSAFSFKYSTRPGTPAAER-PQVPE 355 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ+ + QQ + DA VG+ + VL EK G+ G++VG+S L +V + + Sbjct: 356 EVKTERLYRLQELITRQQRAAQDAMVGRRVGVLFEKAGRMPGQMVGKSDHLHAVHVTG-D 414 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IGD+ +V I + ++L G L+ Sbjct: 415 VAIGDLRQVEIIESGPNSLAGRLL 438 >gi|294085157|ref|YP_003551917.1| 2-methylthioadenine synthetase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664732|gb|ADE39833.1| 2-methylthioadenine synthetase [Candidatus Puniceispirillum marinum IMCC1322] Length = 451 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 237/447 (53%), Positives = 313/447 (70%), Gaps = 7/447 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM D+ GY + + D AD+++LNTCHIREKA+EKV+S L Sbjct: 3 KKLFIKTYGCQMNVYDSDRMTDVLAPLGYAPIETPDGADMVILNTCHIREKASEKVFSEL 62 Query: 85 GRIRNLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 GR+R +K +R ++G + + VAGCVAQAEG EI RR+P V++VVGPQTY+RLPEL+ Sbjct: 63 GRLRMMKEKARDQQGRAVTIAVAGCVAQAEGAEITRRAPWVDIVVGPQTYHRLPELIAEI 122 Query: 143 -ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 KR +DTD+ E KF+ L + RG AFL++QEGCDKFC FCVVPYTRG Sbjct: 123 DPSVRKRAIDTDFPQEVKFDLLP----EEHAPRGPAAFLSVQEGCDKFCAFCVVPYTRGA 178 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR + V+ EA +L+ G EITLLGQNVNA+ G G + L+++L+EI GL Sbjct: 179 EYSRPAADVLAEATRLVGRGTREITLLGQNVNAYHGDDGHGSVWSLGRLIHALAEIDGLE 238 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP DM D LI AHG++ LMPYLHLP+QSGSDR+L +MNRRH+ Y ++ID+ Sbjct: 239 RIRYTTSHPLDMDDELIAAHGNVPQLMPYLHLPIQSGSDRVLDAMNRRHSKDVYFKVIDK 298 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R VRPDIA+S DFIVGFPGE+D DF T+ L+DK+GYA A+SFKYSPR GTP S Q Sbjct: 299 LRHVRPDIAMSGDFIVGFPGESDQDFADTLALIDKVGYASAYSFKYSPRPGTPASVSDLQ 358 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V E VKA+RL LQ+ L QQ +FN G +++L+E+ G G++ GRSP++Q+V Sbjct: 359 VPEAVKADRLEALQQLLNAQQFAFNKKTEGMRLDILVERAGGRAGQMAGRSPFMQAVNFA 418 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG II I + + +++ E+ Sbjct: 419 GSEDQIGQIIACDIIEGRQNSVTAEIT 445 >gi|260760773|ref|ZP_05873116.1| RNA modification protein [Brucella abortus bv. 2 str. 86/8/59] gi|260671205|gb|EEX58026.1| RNA modification protein [Brucella abortus bv. 2 str. 86/8/59] Length = 380 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 227/377 (60%), Positives = 291/377 (77%) Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 ++++R +G +L + VAGCVAQAEG+EILRR+P V++V+GPQTY+RLP L R R G++V Sbjct: 1 MRDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVRGGEKV 60 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 V+TDY++EDKFE L RKRGV+AFLT+QEGCDKFCTFCVVPYTRG E+SRS+ Q Sbjct: 61 VETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVKQ 120 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 +V EA +L D+GV E+TLLGQNVNAW G+G DG + +LL+ L+ I G+ RLRYTTSH Sbjct: 121 IVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIARLRYTTSH 180 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 PRDM D LI AH DL LMPYLHLPVQSGSDRILK+MNRRH A EY ++I+RIR+VRPD+ Sbjct: 181 PRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRNVRPDM 240 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 A+S DFIVGFPGETD DF TM LV + YAQA+SFKYSPR GTPG+++ + V+E VK E Sbjct: 241 ALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEEAVKDE 300 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449 RL LQ L QQ +F D+ +G+ ++VL+EK G+E G++VGRSPWL V+++ +GD Sbjct: 301 RLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDDNKDRVGD 360 Query: 450 IIKVRITDVKISTLYGE 466 II V+I ++L + Sbjct: 361 IIHVKIVSTGTNSLIAQ 377 >gi|163747528|ref|ZP_02154878.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanibulbus indolifex HEL-45] gi|161379206|gb|EDQ03625.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanibulbus indolifex HEL-45] Length = 434 Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust. Identities = 238/440 (54%), Positives = 313/440 (71%), Gaps = 14/440 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ F+K+YGCQMNVYDS RM + QGY + DDAD+I+LNTCHIREKAAEKVYS Sbjct: 4 PKKLFIKTYGCQMNVYDSERMAESLGGQGYVTTDKADDADMILLNTCHIREKAAEKVYSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR++ LK++R DL + VAGCVAQAEG EI+RR P V++VVGPQ+Y+RLPE+ + Sbjct: 64 LGRLKPLKDAR----PDLKIGVAGCVAQAEGAEIMRRQPAVDLVVGPQSYHRLPEMEAKV 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R G+ +DTD+ EDKF+ L KR AFLT+QEGCDKFC FCVVPYTRG E+ Sbjct: 120 RSGQSALDTDFPAEDKFDHLK---SRPKAKRAPAAFLTVQEGCDKFCAFCVVPYTRGAEV 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +V++EAR L++ GV E+TLLGQNVNA+ G G+ T +DL+ +L+++ GL R+ Sbjct: 177 SRPAEKVLEEARDLVERGVREVTLLGQNVNAYHG-GM-----TLADLIRALAKVDGLERI 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP DM D LI AHG++ LMPYLHLPVQSGSD ILK MNR HTA Y ++++RIR Sbjct: 231 RYTTSHPNDMGDDLIAAHGEVPELMPYLHLPVQSGSDHILKRMNRSHTAESYLKLLERIR 290 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 RPDI +S DFIVGFP E+D DF ATM+LV ++ Y A+SFKYS R GTP + VD Sbjct: 291 EARPDILLSGDFIVGFPEESDADFEATMELVRQVRYGYAYSFKYSTRPGTPAAER-PLVD 349 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 V +RL LQ + + Q + VG+ + VL+EK G+ G+++G+S +L +V + + Sbjct: 350 PAVADDRLQRLQGLITQHQREIQQSMVGREVSVLVEKQGRLPGQMLGKSEYLHAVHIENC 409 Query: 444 NHNIGDIIKVRITDVKISTL 463 IGDI +VR+T+ K ++L Sbjct: 410 TAAIGDIQRVRVTEAKTNSL 429 >gi|126735009|ref|ZP_01750755.1| tRNA-i(6)A37 modification enzyme MiaB [Roseobacter sp. CCS2] gi|126715564|gb|EBA12429.1| tRNA-i(6)A37 modification enzyme MiaB [Roseobacter sp. CCS2] Length = 435 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 240/448 (53%), Positives = 317/448 (70%), Gaps = 17/448 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ ++K+YGCQMNVYDS RM + +GY + DDAD+I+LNTCHIREKAAEKVYS Sbjct: 3 APKKLYIKTYGCQMNVYDSERMAEALGGKGYVETQTPDDADMILLNTCHIREKAAEKVYS 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR + LK E DL + VAGCVAQAEGEEI++R P+V++VVGPQ+Y+RLP + + Sbjct: 63 ELGRFKRLK----AENPDLKIGVAGCVAQAEGEEIIKRQPMVDLVVGPQSYHRLPAMDDA 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G + +DTD+ +DKFE L KRG TAFLT+QEGCDKFC FCVVPYTRG E Sbjct: 119 IQTGAKALDTDFPDDDKFETLKTR---TKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAE 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGL 260 +SR +++ EA++L+++GV EITLLGQNVNA+ G GL G L+++L ++ GL Sbjct: 176 VSRPADRIIREAQELVESGVKEITLLGQNVNAYHGHAGGLAG-------LIWALDKVDGL 228 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP DM D LI+AHG D LMPYLHLPVQSGSDRILK+MNR+HT Y ++I Sbjct: 229 ERIRFTTSHPNDMDDALIEAHGRCDKLMPYLHLPVQSGSDRILKAMNRKHTGESYVRLIA 288 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR RPD+ +S DFIVGFPGETD DF TM LV + Y QA+SFKYS R GTP + Sbjct: 289 RIRQARPDLLLSGDFIVGFPGETDQDFEDTMQLVRDVHYGQAYSFKYSTRPGTPAAEK-P 347 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 Q+ E+V +RL LQ LREQQ + A VG+ ++VL EK G+E G+++G+S +L +V Sbjct: 348 QLPEDVMNDRLQRLQALLREQQQATQAAMVGREVKVLFEKAGREPGQMIGKSEYLHAVYA 407 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ IG + +V++ ++L G L+ Sbjct: 408 DAPADVIGQVRRVKVVQDSPNSLRGALM 435 >gi|114799640|ref|YP_758837.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Hyphomonas neptunium ATCC 15444] gi|122942826|sp|Q0C606|MIAB_HYPNA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|114739814|gb|ABI77939.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Hyphomonas neptunium ATCC 15444] Length = 449 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 240/447 (53%), Positives = 309/447 (69%), Gaps = 13/447 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F+++YGCQMNVYDS R+ D+ GY V + + ADL+V+NTCHIREKA EKVYS LG+ Sbjct: 4 LFIRTYGCQMNVYDSERIRDVLRPLGYAPVETPESADLVVVNTCHIREKATEKVYSELGQ 63 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-- 144 ++ +K + GG + + VAGCVAQAEGEE++RR P V++V+GPQ Y++LPE++ RA Sbjct: 64 LKRMKEA---SGGRMTIAVAGCVAQAEGEELIRRQPAVDLVLGPQAYHKLPEMIARASRA 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G R+ +T++ +KF+ L G AF+++QEGCDKFCTFCVVPYTRG E+S Sbjct: 121 IGDRL-ETEFDTVEKFDALPKT----READGPAAFVSVQEGCDKFCTFCVVPYTRGAEMS 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---DGEKCTFSDLLYSLSEIKGLV 261 R + +V E R L GV EITLLGQNVNA+ G GE T L LS+I G+ Sbjct: 176 RRVDDIVFETRSLASQGVREITLLGQNVNAFHGPAPVLEGGEDWTLGQLCRHLSKIGGIE 235 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHPRDM D LI AHGD +MP+LHLPVQSGSDRILK+MNR HTA YR II R Sbjct: 236 RIRYTTSHPRDMDDDLIAAHGDTPAMMPFLHLPVQSGSDRILKAMNRGHTADHYRDIITR 295 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDIAI+SDFIVGFPGE+D DF ATM LV IGYA A+SFKYS R GTP + M Sbjct: 296 VRAARPDIAIASDFIVGFPGESDADFEATMQLVRDIGYAIAYSFKYSSRPGTPAAEMHGH 355 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + E+VK RL LQ LREQQ FN + +G+ + VL+ G+ G++ GRSP+LQ+V Sbjct: 356 LSESVKDARLQALQALLREQQTEFNASQIGKTLPVLVTGKGRNAGQMHGRSPYLQAVHFE 415 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + G I+ V++ +++L GELV Sbjct: 416 GPDDLNGKIVDVKVIGASLNSLTGELV 442 >gi|254437886|ref|ZP_05051380.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Octadecabacter antarcticus 307] gi|198253332|gb|EDY77646.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Octadecabacter antarcticus 307] Length = 441 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 239/451 (52%), Positives = 321/451 (71%), Gaps = 17/451 (3%) Query: 19 DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78 D P++ F+K+YGCQMNVYDS RM + +QGY + DAD+I+LNTCHIREKAAE Sbjct: 5 DSGPSPKKLFIKTYGCQMNVYDSERMAESLGTQGYVTTDVAADADMILLNTCHIREKAAE 64 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 KVYS LGR++ LK ++ DL + V GCVAQAEG EI+RR P+V++VVGPQ+Y+RLP Sbjct: 65 KVYSELGRLKPLKANKP----DLKIGVTGCVAQAEGAEIMRRQPMVDLVVGPQSYHRLPS 120 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + + G++ +DTD+ +DKFE L KRG AFLT+QEGCDKFC FCVVPYT Sbjct: 121 MEQAVARGEKALDTDFPEDDKFETLK---SRSKAKRGPCAFLTVQEGCDKFCAFCVVPYT 177 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSE 256 RG E+SR +++ EA++L++ GV EITLLGQNVNA+ G GL G L++ L + Sbjct: 178 RGSEVSRPADRIIREAQELVETGVREITLLGQNVNAYHGHAGGLAG-------LIWDLDK 230 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + GL R+R+TTSHP DM D LI+AHG D LMPYLHLPVQSGSD++LK+MNR+HT +Y Sbjct: 231 VDGLERIRFTTSHPNDMDDALIEAHGTCDKLMPYLHLPVQSGSDKVLKAMNRKHTRDQYF 290 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +I+RIR+ RPD+ +S DFIVGFPGET+ DF TMDLV +GY QA+SFKYS R GTP + Sbjct: 291 VLIERIRAARPDLLLSGDFIVGFPGETEADFEDTMDLVRTVGYGQAYSFKYSTRPGTPAA 350 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 QVDE+VK +RL LQ L +QQ + +G+ ++VL EK G+E G+++G+S +L Sbjct: 351 ERA-QVDEDVKLDRLHRLQALLGDQQREIQTSMIGRTVKVLFEKKGRESGQMIGKSEYLH 409 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 +V ++ + +GD+ VRI + ++L GE+ Sbjct: 410 AVFADTTDVEVGDLRDVRIVKSERNSLGGEI 440 >gi|294012042|ref|YP_003545502.1| bifunctional enzyme involved in thiolation and methylation of tRNA [Sphingobium japonicum UT26S] gi|292675372|dbj|BAI96890.1| bifunctional enzyme involved in thiolation and methylation of tRNA [Sphingobium japonicum UT26S] Length = 449 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 236/448 (52%), Positives = 310/448 (69%), Gaps = 10/448 (2%) Query: 19 DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78 D P F VKS+GCQMNVYD RM ++ +G +ADL++LNTCHIREKA + Sbjct: 5 DAQKTPATFHVKSFGCQMNVYDGERMAELLGERGMTAAADGAEADLVILNTCHIREKAVD 64 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 KVYS +GR+ SR ++ VAGCVAQAEG EI RR+ V++VVGPQ Y+RLP+ Sbjct: 65 KVYSDIGRMTREDGSRP------MIAVAGCVAQAEGGEIQRRARNVDIVVGPQAYHRLPD 118 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 L++RA G++ VDTD + KF L +R+ TAFLTI EGCDKFCT+CVVPYT Sbjct: 119 LIDRAGRGEQAVDTDMPLASKFGALP----SRSRQARPTAFLTIMEGCDKFCTYCVVPYT 174 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG EISRS S ++DEA+ L+D GV EITLLGQNVNAW G+ G L+ L++I Sbjct: 175 RGAEISRSWSAILDEAKALVDGGVGEITLLGQNVNAWTGEDDKGRMQGMDGLVRELAKID 234 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L R+RYTTSHP DMSD LI AHGD LMP+LHLPVQSG+DR+LK+MNR H+A Y +I Sbjct: 235 ALKRIRYTTSHPNDMSDGLIAAHGDEAKLMPFLHLPVQSGNDRVLKAMNRSHSADSYLRI 294 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I+R+R+ RPDIA+S DFIVGFPGETD +F T+ +V+++ YAQ +SFKYSPR GTP ++M Sbjct: 295 IERVRAARPDIALSGDFIVGFPGETDAEFEDTLKIVEQVRYAQCYSFKYSPRPGTPAADM 354 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 Q+ V ERL LQ + Q FN A VG+ ++L+E+ G+ G+L+G++PWLQSV Sbjct: 355 DGQIPAEVMDERLARLQSLINRHQAEFNAATVGRRTDILLERKGRHPGQLIGKTPWLQSV 414 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGE 466 + + +IGD+++V I ++L G+ Sbjct: 415 HVTAPELSIGDMVEVDIISAGPNSLAGQ 442 >gi|85705226|ref|ZP_01036325.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius sp. 217] gi|85670099|gb|EAQ24961.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseovarius sp. 217] Length = 446 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 239/444 (53%), Positives = 319/444 (71%), Gaps = 10/444 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K+YGCQMNVYDS RM + GY +AD+I+LNTCHIREKAAEKVYS L Sbjct: 11 KKLYIKTYGCQMNVYDSERMAEAMGGAGYVETQDPAEADMILLNTCHIREKAAEKVYSEL 70 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R K+ + DL + V GCVAQAEGEEI+RR P+V++VVGPQ+Y+RLPE+ + R Sbjct: 71 GRMRQFKDDKP----DLKIGVTGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAQVR 126 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + +DTD+ +EDKF++L RG TAFLT+QEGCDKFC FCVVPYTRG E+S Sbjct: 127 AGGKALDTDFPLEDKFDKLRHRP---KAARGPTAFLTVQEGCDKFCAFCVVPYTRGSEVS 183 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +++V++EAR L++ GV EITLLGQNVNA+ G G +G + L+++L++I GL R+R Sbjct: 184 RPVARVLEEARDLVERGVREITLLGQNVNAYHGAG-EGGDWGLARLIWALNDIDGLERIR 242 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP DM D LI AHGD LMPYLHLPVQSGSD+ILK MNR HTA Y ++I+RIR+ Sbjct: 243 FTTSHPNDMDDDLIAAHGDCAKLMPYLHLPVQSGSDKILKRMNRSHTAESYLRLIERIRA 302 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDI IS DFIVGFP ET++DF+AT+DL++ + Y AFSFKYS R GTP + QV E Sbjct: 303 ARPDILISGDFIVGFPEETEEDFQATLDLIEAVTYGYAFSFKYSTRPGTPAAERA-QVAE 361 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL LQ + QQ + ++ VG+ + VL EK G+ G++VG+S +L +V + + Sbjct: 362 AVKTERLHRLQDLIARQQRAAQNSMVGRTVGVLFEKPGRMPGQMVGKSDYLHAVHVTG-D 420 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 +GD+ +V I + ++L G L+ Sbjct: 421 VAVGDLRQVEIIESGPNSLAGRLL 444 >gi|163734559|ref|ZP_02141998.1| tRNA-i(6)A37 thiotransferase enzyme MiaB, putative [Roseobacter litoralis Och 149] gi|161392052|gb|EDQ16382.1| tRNA-i(6)A37 thiotransferase enzyme MiaB, putative [Roseobacter litoralis Och 149] Length = 426 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 236/428 (55%), Positives = 311/428 (72%), Gaps = 8/428 (1%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNVYDS RM + ++GY + +DAD+I+LNTCHIREKAAEKVYS LGR+++LK Sbjct: 1 MNVYDSERMSEALVAEGYVETKTAEDADMILLNTCHIREKAAEKVYSELGRLKSLK---- 56 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 + DL + VAGCVAQAEGEEI+RR P V++VVGPQ+Y+RLP++ R R G + +DTD+ Sbjct: 57 ADNPDLKIGVAGCVAQAEGEEIMRRQPAVDLVVGPQSYHRLPQMEARLREGHKALDTDFP 116 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 EDKFE L +R +AFLT+QEGCDKFC FCVVPYTRG E+SR +++V+DEAR Sbjct: 117 PEDKFEELKARPKA---RRAPSAFLTVQEGCDKFCAFCVVPYTRGAEVSRPVTRVLDEAR 173 Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275 L++ GV EITLLGQNVNA+ G G DG + T + L+++L++I GL R+R+TTSHP DM D Sbjct: 174 DLVERGVREITLLGQNVNAYHGAGADGNEQTLAQLIWALNDIDGLERIRFTTSHPNDMRD 233 Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335 LI+AH D LMPYLHLPVQSGSD+ILK MNR HTA Y ++I+RIR+ RPDI +S DF Sbjct: 234 DLIEAHRDCPKLMPYLHLPVQSGSDKILKRMNRSHTADSYLRLIERIRAGRPDILLSGDF 293 Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395 IVGFP ET+ DF+AT+DL++ + Y A+SFKYS R GTP + QVD + ERL +Q Sbjct: 294 IVGFPEETEADFQATLDLIEAVNYGYAYSFKYSTRPGTPAAERA-QVDPDEADERLQRIQ 352 Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455 + QQ + VG+ + VLIEK G+ G++VG+S +L +V ++ N IGDI+ VRI Sbjct: 353 ALITRQQQDIQQSMVGRDVSVLIEKPGRFDGQMVGKSEYLHAVHVDQCNARIGDILPVRI 412 Query: 456 TDVKISTL 463 + K ++L Sbjct: 413 VEAKRNSL 420 >gi|119386409|ref|YP_917464.1| RNA modification protein [Paracoccus denitrificans PD1222] gi|229890585|sp|A1B8C4|MIAB_PARDP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|119377004|gb|ABL71768.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paracoccus denitrificans PD1222] Length = 445 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 244/457 (53%), Positives = 314/457 (68%), Gaps = 12/457 (2%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 M Q ++ F+K+YGCQMNVYDS RM + ++GY + DAD+++LNTCHI Sbjct: 1 MSDQASKPAPAVKKLFIKTYGCQMNVYDSQRMAEAMGAEGYVLTENQSDADMVLLNTCHI 60 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 REKAAEK+YS LGR++ LK R DL + VAGCVAQAEGEEI RR PIV++VVGPQ Sbjct: 61 REKAAEKLYSDLGRLKPLKAERP----DLKIGVAGCVAQAEGEEIQRRMPIVDLVVGPQA 116 Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 Y+RLP + AR G R VDT++ EDKFE L +R AFLT+QEGCDKFC F Sbjct: 117 YHRLPAM---ARAG-RGVDTEFPAEDKFEHLPKP---AATRRAPAAFLTVQEGCDKFCAF 169 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 CVVPYTRG E+SR +S+++ EAR L+ GV EITLLGQNVN W G+G +G + F L+ Sbjct: 170 CVVPYTRGAEVSRPVSRILAEARDLVARGVREITLLGQNVNGWHGEGPEGSEWGFGRLIR 229 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +++EI GL R+RYTTSHP DM+D LI AH D LMPYLHLPVQSGSDRILK+MNRRHT Sbjct: 230 AIAEIDGLDRIRYTTSHPNDMADDLIAAHRDEPKLMPYLHLPVQSGSDRILKAMNRRHTV 289 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 +Y ++I+RIR RPDI ++SDFIVGFPGETD D + T++LV + + AFSFKYSPR G Sbjct: 290 DQYLRLIERIREARPDIMLTSDFIVGFPGETDQDHQGTLELVRAVNFGTAFSFKYSPRPG 349 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 TP E ++ V RL LQ L QQ + + VG+ + VL EK G+ G++VG+S Sbjct: 350 TPAYERPE-IEGAVADARLQELQALLTSQQKAAQEGMVGRELGVLFEKPGRNPGQMVGKS 408 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 +L +V + + +GD+++VRIT ++L G L Sbjct: 409 DYLHAVFVEAPAAKVGDLVRVRITHSAPNSLAGVLAA 445 >gi|58040437|ref|YP_192401.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gluconobacter oxydans 621H] gi|58002851|gb|AAW61745.1| MiaB protein [Gluconobacter oxydans 621H] Length = 441 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 237/435 (54%), Positives = 310/435 (71%), Gaps = 3/435 (0%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNVYDS RM D+ GY V +DAD+++LNTCHIRE+A EKV+S LGR+R +++ R+ Sbjct: 1 MNVYDSARMADVLRPLGYGPVERPEDADMVILNTCHIRERATEKVFSELGRLRKIRDERM 60 Query: 96 KEGGD-LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTD 153 G D ++ VAGCVAQAEGE IL R+P V++V+GPQTY++LPE++ RA ++TD Sbjct: 61 SNGADRTIIAVAGCVAQAEGEVILTRAPYVDLVLGPQTYHKLPEMVARAARAGGAVIETD 120 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + VE KF+ L D + +TAFLTIQEGCDKFC+FCVVPYTRG E SR ++ V+ E Sbjct: 121 FPVEQKFDFLP-TDAAPQTQGNLTAFLTIQEGCDKFCSFCVVPYTRGAETSRPVASVLAE 179 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 AR++ ++GV EITLLGQNVNA+ G G T + L+ L++I GL R+RY TSHPRD+ Sbjct: 180 ARRMAESGVREITLLGQNVNAYHGDDGKGGSETLAGLVEQLAQIPGLGRIRYMTSHPRDV 239 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 LI AH D LMP+LHLPVQSGSDRILK+MNR HTA EYR+ + ++R RPD+A+SS Sbjct: 240 DQSLIDAHRDNPALMPFLHLPVQSGSDRILKAMNRGHTADEYRESVRKLREARPDLALSS 299 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFIVG PGET++DF ATM LV IG+A A+SFKYSPR GTP + QV E+VK RL Sbjct: 300 DFIVGHPGETEEDFEATMQLVRDIGFAMAYSFKYSPRPGTPAAGQPMQVPEDVKDRRLAE 359 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453 LQ LREQQ +FN VG + E+L+ G++ G++ GRSP+LQ V + +H IG +KV Sbjct: 360 LQALLREQQDAFNADMVGTVQEILVTNRGRKPGQIAGRSPYLQPVHFDGPDHLIGSTVKV 419 Query: 454 RITDVKISTLYGELV 468 IT + ++L G L+ Sbjct: 420 AITTRRTNSLGGTLI 434 >gi|94498011|ref|ZP_01304575.1| 2-methylthioadenine synthetase [Sphingomonas sp. SKA58] gi|94422594|gb|EAT07631.1| 2-methylthioadenine synthetase [Sphingomonas sp. SKA58] Length = 428 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 235/433 (54%), Positives = 299/433 (69%), Gaps = 10/433 (2%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNVYD RM +M +QG DADL++LNTCHIREKA +KVYS +GR+ SR Sbjct: 1 MNVYDGERMAEMLGTQGMTPAAEGTDADLVILNTCHIREKAVDKVYSDIGRLTRDDGSRP 60 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 ++ VAGCVAQAEG EI RR+ V++VVGPQ Y+RLP+L+++ G+ VDTD Sbjct: 61 ------MIAVAGCVAQAEGSEIQRRARNVDIVVGPQAYHRLPDLIDKVGRGEAAVDTDMP 114 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 KF L ++ TAFLTI EGCDKFCT+CVVPYTRG EISRS S +VDEA+ Sbjct: 115 AASKFGALP----ARTKQARPTAFLTIMEGCDKFCTYCVVPYTRGAEISRSWSAIVDEAK 170 Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275 L+D G EITLLGQNVNAW G+ G L+ L++I L R+RYTTSHP DMSD Sbjct: 171 ALVDGGAREITLLGQNVNAWTGEDDKGRAQGMDGLVRELAKIPDLRRIRYTTSHPNDMSD 230 Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335 LI AHGD+D LMP+LHLPVQ+G+DRILK+MNR H+A Y +II+R+R RPDIAIS DF Sbjct: 231 GLIAAHGDIDKLMPFLHLPVQAGNDRILKAMNRSHSADSYLRIIERVRQARPDIAISGDF 290 Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395 IVGFPGETD +F T+ +V+++ YAQ +SFKYSPR GTP ++M Q+ V ERL LQ Sbjct: 291 IVGFPGETDAEFEDTLRIVEQVRYAQCYSFKYSPRPGTPAADMDHQIPAAVMDERLSRLQ 350 Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455 L QQ FN A VG+ ++L+E+ G+ G+L+G+SPWLQSVV+ + +IGD++ V I Sbjct: 351 ALLNRQQAEFNAATVGRTTQILLERKGRHPGQLIGKSPWLQSVVVTAPELSIGDLVNVDI 410 Query: 456 TDVKISTLYGELV 468 ++L GE V Sbjct: 411 ISAGPNSLAGETV 423 >gi|307293142|ref|ZP_07572988.1| RNA modification enzyme, MiaB family [Sphingobium chlorophenolicum L-1] gi|306881208|gb|EFN12424.1| RNA modification enzyme, MiaB family [Sphingobium chlorophenolicum L-1] Length = 449 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 234/444 (52%), Positives = 307/444 (69%), Gaps = 10/444 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P F VKS+GCQMNVYD RM +M ++G +ADL++LNTCHIREKA +KVYS Sbjct: 9 TPTTFHVKSFGCQMNVYDGERMAEMLGTRGMIAAAEGVEADLVILNTCHIREKAVDKVYS 68 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +GR+ SR ++ VAGCVAQAEG EI RR+ V++VVGPQ Y+RLP+L+++ Sbjct: 69 DIGRMTREDGSRP------MIAVAGCVAQAEGGEIQRRARNVDIVVGPQAYHRLPDLIDK 122 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A G++ VDTD + KF L G ++ TAFLTI EGCDKFCT+CVVPYTRG E Sbjct: 123 AGRGEQAVDTDMPLASKFAALP----GRTKQARPTAFLTIMEGCDKFCTYCVVPYTRGAE 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR + ++DEA+ L+D GV EITLLGQNVNAW G+ G L+ L++I L R Sbjct: 179 ISRGWNAILDEAKALVDGGVREITLLGQNVNAWTGEDDKGRTQGMDGLVRELAKIDALKR 238 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP DMSD LI AHGD LMP+LHLPVQSG+DRILK+MNR H+ Y +II+R+ Sbjct: 239 IRYTTSHPNDMSDGLIAAHGDEPKLMPFLHLPVQSGNDRILKAMNRSHSTDSYLRIIERV 298 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R R D+A+S DFIVGFPGETD +F T+ +V+++ YAQ +SFKYSPR GTP ++M Q+ Sbjct: 299 RECRGDMALSGDFIVGFPGETDAEFEDTLKIVEQVRYAQCYSFKYSPRPGTPAADMDHQI 358 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 V ERL LQ + QV FN A VG+ ++L+E+ G+ G+L+G++PWLQSV + + Sbjct: 359 PAEVMGERLARLQAVINRHQVEFNAATVGRTTDILLERKGRHPGQLIGKTPWLQSVHVTA 418 Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466 +IGD+I+V I ++L GE Sbjct: 419 PELSIGDMIEVDIISAGPNSLAGE 442 >gi|296447885|ref|ZP_06889796.1| RNA modification enzyme, MiaB family [Methylosinus trichosporium OB3b] gi|296254626|gb|EFH01742.1| RNA modification enzyme, MiaB family [Methylosinus trichosporium OB3b] Length = 437 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 240/432 (55%), Positives = 310/432 (71%), Gaps = 4/432 (0%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNVYD+ RM D+ +GY S DDADL+VLNTCHIREKA +KVYS LGR+ LK+ R Sbjct: 1 MNVYDAERMTDLLAGRGYGEAASEDDADLVVLNTCHIREKATDKVYSELGRLARLKSERG 60 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 EG D +VVAGCVAQAEG E+LRR V++VVGPQ+Y+RL ELL RA G+R+ +TD++ Sbjct: 61 AEGRDFRIVVAGCVAQAEGVEVLRRQRAVDLVVGPQSYHRLDELLTRAEAGERIAETDFA 120 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 V DKF L RGVTAF+T QEGCDKFC+FCVVPYTRG E+SRS++++V EA Sbjct: 121 VADKFAALRRAP----IPRGVTAFVTAQEGCDKFCSFCVVPYTRGAEVSRSVAEIVAEAE 176 Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275 L GV EIT++GQNVNA+RG+ +G T LL LS I+G+ RLRYTTSHP DM Sbjct: 177 ALAAAGVREITIIGQNVNAYRGEDENGAPATLPRLLARLSRIEGVTRLRYTTSHPIDMDQ 236 Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335 LI AH L +L P++HLPVQSGS+R+L++MNRRH A Y I+ R+R+ RPDIA+SSDF Sbjct: 237 ELIDAHASLPMLAPFVHLPVQSGSNRVLRAMNRRHDADFYLDIVARLRAARPDIALSSDF 296 Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395 IVGFPGETD DF AT+ L+ +G+A +FSFKYSPR GTPG+ +Q+ E+VK+ERL LQ Sbjct: 297 IVGFPGETDADFEATLALIRAVGFASSFSFKYSPRPGTPGAERDDQIAEDVKSERLAALQ 356 Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455 L +Q+ +FN A VG+ +E L EK G+ G++ G+SP++Q+V + IG I+ V I Sbjct: 357 ALLEQQRQAFNAATVGRTVETLFEKPGRHGGQIAGKSPYMQAVHASGGPELIGSILPVTI 416 Query: 456 TDVKISTLYGEL 467 ++L G + Sbjct: 417 VAAGSNSLAGTI 428 >gi|148260356|ref|YP_001234483.1| RNA modification protein [Acidiphilium cryptum JF-5] gi|229890413|sp|A5FY82|MIAB_ACICJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|146402037|gb|ABQ30564.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidiphilium cryptum JF-5] Length = 450 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 239/443 (53%), Positives = 302/443 (68%), Gaps = 9/443 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + ++GCQMNVYDS RM D+ GY +V + DAD+++LNTCHIRE+A+EK++S LGR Sbjct: 10 LHITTWGCQMNVYDSGRMADVLRPLGYRQV-ATQDADMVILNTCHIRERASEKLFSELGR 68 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R LK SR GG +++ VAGCVAQAEG EIL R+P V++VVG Q Y+RLPEL+ Sbjct: 69 LRALKESR---GGAMMIAVAGCVAQAEGAEILARAPHVDLVVGSQAYHRLPELIAEIEAK 125 Query: 147 KR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +R V+DTD+ KF+ L +G AFL IQEGCDKFCTFCVVPYTRG E SR Sbjct: 126 RRAVIDTDFPAAQKFDLLPEDQA----SQGPIAFLAIQEGCDKFCTFCVVPYTRGAEASR 181 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + ++ EAR+L+ G EI LLGQNVNAW G+ DG + LL L++I GL RLRY Sbjct: 182 PAAAILAEARRLVAGGAREIALLGQNVNAWHGEAPDGATWNLARLLAELADIDGLARLRY 241 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTSHPRDM LI AH D LMP+LHLPVQSGSD IL MNRRH A +R+I +R+ Sbjct: 242 TTSHPRDMDAALIAAHRDNPKLMPFLHLPVQSGSDAILARMNRRHGADLFRRIAGELRAA 301 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RPDIA+SSDFIVGFPGETD DF ATM LV + G+A A+SFKYS R GTP ++ +Q+DE Sbjct: 302 RPDIALSSDFIVGFPGETDADFAATMRLVRETGFALAYSFKYSRRPGTPAADAADQIDEA 361 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 VK RL LQ LR+QQ +FN A VG+ EVL G+ G+ GRSP+LQ VV+++ + Sbjct: 362 VKDARLQELQAVLRDQQHAFNRAQVGRSFEVLFTGPGRHPGQSAGRSPYLQPVVVDNADI 421 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 G + V+I ++L L Sbjct: 422 PPGTLRTVKIVQSNPNSLMASLT 444 >gi|326403547|ref|YP_004283629.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Acidiphilium multivorum AIU301] gi|325050409|dbj|BAJ80747.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Acidiphilium multivorum AIU301] Length = 450 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 239/443 (53%), Positives = 302/443 (68%), Gaps = 9/443 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + ++GCQMNVYDS RM D+ GY +V + DAD+++LNTCHIRE+A+EK++S LGR Sbjct: 10 LHITTWGCQMNVYDSGRMADVLRPLGYRQV-ATQDADMVILNTCHIRERASEKLFSELGR 68 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R LK SR GG +++ VAGCVAQAEG EIL R+P V++VVG Q Y+RLPEL+ Sbjct: 69 LRALKESR---GGAMMIAVAGCVAQAEGAEILARAPHVDLVVGSQAYHRLPELIAEIEAK 125 Query: 147 KR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +R V+DTD+ KF+ L +G AFL IQEGCDKFCTFCVVPYTRG E SR Sbjct: 126 RRAVIDTDFPAAQKFDLLPEDQA----SQGPIAFLAIQEGCDKFCTFCVVPYTRGAEASR 181 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + ++ EAR+L+ G EI LLGQNVNAW G+ DG + LL L++I GL RLRY Sbjct: 182 PAAAILAEARRLVAGGAREIALLGQNVNAWHGEAPDGATWNLARLLAELADIDGLARLRY 241 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTSHPRDM LI AH D LMP+LHLPVQSGSD IL MNRRH A +R+I +R+ Sbjct: 242 TTSHPRDMDAALIAAHRDNPKLMPFLHLPVQSGSDAILARMNRRHGADLFRRIAGELRAA 301 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RPDIA+SSDFIVGFPGETD DF ATM LV + G+A A+SFKYS R GTP ++ +Q+DE Sbjct: 302 RPDIALSSDFIVGFPGETDADFAATMRLVRETGFALAYSFKYSRRPGTPAADAADQIDEA 361 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 VK RL LQ LR+QQ +FN A VG+ EVL G+ G+ GRSP+LQ VV+++ + Sbjct: 362 VKDARLQELQAVLRDQQHAFNRAQVGRSFEVLFTGPGRHPGQSTGRSPYLQPVVVDNADI 421 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 G + V+I ++L L Sbjct: 422 PPGTLRTVKIVQSNPNSLMASLT 444 >gi|310815234|ref|YP_003963198.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Ketogulonicigenium vulgare Y25] gi|308753969|gb|ADO41898.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Ketogulonicigenium vulgare Y25] Length = 440 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 236/451 (52%), Positives = 315/451 (69%), Gaps = 13/451 (2%) Query: 19 DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78 +Q ++ F+K+YGCQMNVYDS RM + +QGY ++ ++AD+++LNTCHIREKAAE Sbjct: 3 NQAEKTKKLFIKTYGCQMNVYDSERMAETLGAQGYVTTDNAEEADMVLLNTCHIREKAAE 62 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 KVYS LGR++ LK + + L + VAGCVAQAEG EI+RR P+V++VVGPQ+Y+ LP Sbjct: 63 KVYSDLGRLKPLKEANPQ----LKIGVAGCVAQAEGAEIMRRMPLVDLVVGPQSYHNLPA 118 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + R + G+R VDTD+ V DKF +L +RG TAFLT+QEGCDKFC FCVVPYT Sbjct: 119 MEARVQSGRRAVDTDFEV-DKFTQLKARP---RAQRGPTAFLTVQEGCDKFCAFCVVPYT 174 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG E+SR +++ EA+ L++ GV EITLLGQNVNAW G+G +G DL+ L+ I Sbjct: 175 RGSEVSRPADKIIAEAQGLVEAGVREITLLGQNVNAWHGQGAEG----LGDLVRRLARID 230 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+RYTTSHP DM+D LI AH + + LMPYLHLPVQSGSDRILK+MNR+HTA +Y ++ Sbjct: 231 GLARIRYTTSHPNDMADDLIAAHAEEEKLMPYLHLPVQSGSDRILKAMNRKHTAEQYLRL 290 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I+RIR+ RPDI +SSDFIVGFPGETD DF T+ L ++G+ +FSFKYS R GTP + Sbjct: 291 IERIRAARPDIVLSSDFIVGFPGETDQDFEDTLQLCAEVGFGASFSFKYSARPGTPAAEK 350 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 E + A RL LQ ++ QQ + + VG+ I VL EK G+ G+L+G+S +L +V Sbjct: 351 PELPPALLDA-RLQRLQAQIIAQQNASLASMVGRTIPVLFEKKGRMPGQLIGKSGYLHAV 409 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 ++ +I +I V I ++L G L Sbjct: 410 HADAPESDIAEIRMVEIMATSTNSLAGRLAT 440 >gi|126727641|ref|ZP_01743473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium HTCC2150] gi|126703057|gb|EBA02158.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodobacterales bacterium HTCC2150] Length = 424 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 234/433 (54%), Positives = 312/433 (72%), Gaps = 9/433 (2%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNVYDS RM + ++GYE+ D AD+I+LNTCHIREKAAEK+YS LGR++ K ++ Sbjct: 1 MNVYDSERMAEALGTKGYEQTTDADQADMILLNTCHIREKAAEKMYSELGRLKQFKLAK- 59 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 ++ VAGCVAQAEG EI+ R P+V++VVGPQ+Y+RLP++ + G++ +DTD+ Sbjct: 60 ---PEMKFAVAGCVAQAEGGEIIERQPMVDLVVGPQSYHRLPKMADAIDRGEKAIDTDFP 116 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 EDKFE L +R +AFLT+QEGCDKFCTFCVVPYTRG E+SR + +++ EAR Sbjct: 117 EEDKFEELK---DRPKARRAPSAFLTVQEGCDKFCTFCVVPYTRGAEVSRPVDRILREAR 173 Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275 +L++ GV EI LLGQNVNA+ G+G DG+ T + L+ ++ I+GL R+R+TTSHPRDM Sbjct: 174 ELVERGVAEINLLGQNVNAYHGEGPDGD-WTLAQLIREMATIEGLERIRFTTSHPRDMEQ 232 Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335 LI AHGD LMPYLHLPVQSGSD+ILK+MNR HT EY +I RIR VRPD+ +S DF Sbjct: 233 DLIDAHGDCAKLMPYLHLPVQSGSDKILKAMNRGHTREEYFALIKRIRDVRPDLLLSGDF 292 Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395 IVGFPGET++DF TMDLV+++G+ QA+SFKYS R GTP + QVDE+VK+ERL LQ Sbjct: 293 IVGFPGETEEDFMDTMDLVEQVGFGQAYSFKYSTRPGTPAAERA-QVDEDVKSERLQRLQ 351 Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455 L +QQ + DA VG+ VL EK G++ G+L+G+S L +V + IG + +VR+ Sbjct: 352 ALLGKQQKAAQDAMVGRETTVLFEKQGRDPGQLIGKSENLHAVHAFADKSLIGTVRRVRV 411 Query: 456 TDVKISTLYGELV 468 ++L GEL+ Sbjct: 412 IKSLTNSLTGELI 424 >gi|241761438|ref|ZP_04759526.1| RNA modification enzyme, MiaB family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374345|gb|EER63842.1| RNA modification enzyme, MiaB family [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 428 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/433 (53%), Positives = 312/433 (72%), Gaps = 13/433 (3%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN YD RM ++ SQG + ADL+VLNTCHIREKAAEKVYS +GR+R Sbjct: 1 MNSYDGERMSELLESQGMKAAEEAATADLVVLNTCHIREKAAEKVYSEIGRLRR------ 54 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 +G ++ +AGCVAQAEG E+L R+ +V++VVGPQ Y+ LPEL+E+A GK VVD D Sbjct: 55 PDGSSPMIALAGCVAQAEGAEVLARTKMVDIVVGPQAYHHLPELIEKAASGK-VVDIDMP 113 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 +E KF+ L R+ G +AFLT+QEGCDKFCT+CVVPYTRG E+SR S++V EA Sbjct: 114 LESKFDALP-----ERRQVGASAFLTVQEGCDKFCTYCVVPYTRGAEVSRPWSRIVKEAH 168 Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275 L+D G EITLLGQNVNAW G+ G L+ +L++I GL R+RYTTSHP DM++ Sbjct: 169 ALVDKGAREITLLGQNVNAWTGEDEAGRSQGLDGLIRALAKIDGLERIRYTTSHPNDMTE 228 Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335 LI+AHG++D LMP+LHLPVQSGS+RILK+MNR HTA Y +++R++ VRPDIA+S DF Sbjct: 229 GLIEAHGEIDKLMPFLHLPVQSGSNRILKAMNRAHTAESYLTLMNRLKEVRPDIALSGDF 288 Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395 IVGFPGE+++DF+AT+DL+ ++GY+ AFSF YSPR GTP ++M Q+D + ERL LQ Sbjct: 289 IVGFPGESEEDFQATLDLISEVGYSLAFSFAYSPRPGTPAADMDNQIDPEISRERLQRLQ 348 Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455 L +QQ FN +G+ VLIE+ GK+ +++G+SPWLQSV++ + IGD+++V + Sbjct: 349 ALLNQQQFDFNQQTIGRKATVLIERKGKKADQMIGKSPWLQSVIIEAPV-AIGDLVEVTL 407 Query: 456 TDVKISTLYGELV 468 TD +++ G+ + Sbjct: 408 TDAGPNSVKGQFL 420 >gi|225631339|ref|ZP_03788011.1| tRNA-i(6)A37 modification enzyme MiaB [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590961|gb|EEH12171.1| tRNA-i(6)A37 modification enzyme MiaB [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 439 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 233/442 (52%), Positives = 317/442 (71%), Gaps = 13/442 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++K+YGCQMNVYDS+ ME++ G+ V+ ADL++LNTCHIREKAAEK+YS LG+ Sbjct: 4 LYIKTYGCQMNVYDSVLMENVIKPLGFNVVSDAGKADLVILNTCHIREKAAEKLYSELGK 63 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 I +L+ ++ +VVAGCVAQAEGEE+ RR+P V++VVGPQ+ LPEL+ +A Sbjct: 64 IHSLRK-------EMTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIATLPELIVKASRS 116 Query: 147 K-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 K V++TD+ KF++L D Y +G +AFL IQEGCDKFCTFCVVPYTRG E SR Sbjct: 117 KGHVINTDFPEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEYSR 174 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++++ EA KL+ NG EI LLGQNVNA+ G+ +GE L+ +++I+ L R+RY Sbjct: 175 PVNEIFHEALKLVANGANEINLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIEKLERIRY 233 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTSHPRDM + L AH + LMP++HLPVQSGS++IL +MNR+HTA EY +IIDR R + Sbjct: 234 TTSHPRDMHESLYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEIIDRFRKL 293 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 +P+I SSDFIVGFPGET+ DF TM LV+K+ YAQA+SFKYSPR GTPG+ +QV E Sbjct: 294 KPEIEFSSDFIVGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAERKDQVPEE 353 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERLL LQK + +QQ+ FN + VG+ I VL +K GK + +++G+SP++QSV ++ Sbjct: 354 VKTERLLRLQKLISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCIDDSE 413 Query: 445 HNIGD-IIKVRITDVKISTLYG 465 D I+ V++ + + S+L G Sbjct: 414 DKYRDKIVNVKVLEARQSSLLG 435 >gi|42520296|ref|NP_966211.1| TRAM domain-containing protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|225630141|ref|YP_002726932.1| tRNA-i(6)A37 modification enzyme MiaB [Wolbachia sp. wRi] gi|81652678|sp|Q73HW8|MIAB_WOLPM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|42410034|gb|AAS14145.1| TRAM domain protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|225592122|gb|ACN95141.1| tRNA-i(6)A37 modification enzyme MiaB [Wolbachia sp. wRi] Length = 439 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 233/442 (52%), Positives = 317/442 (71%), Gaps = 13/442 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++K+YGCQMNVYDS+ ME++ G+ V+ ADL++LNTCHIREKAAEK+YS LG+ Sbjct: 4 LYIKTYGCQMNVYDSVLMENVIKPLGFNVVSDAGKADLVILNTCHIREKAAEKLYSELGK 63 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 I +L+ ++ +VVAGCVAQAEGEE+ RR+P V++VVGPQ+ LPEL+ +A Sbjct: 64 IHSLRK-------EMTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIATLPELIVKASRS 116 Query: 147 K-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 K V++TD+ KF++L D Y +G +AFL IQEGCDKFCTFCVVPYTRG E SR Sbjct: 117 KGHVINTDFPEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEYSR 174 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++++ EA KL+ NG EI LLGQNVNA+ G+ +GE L+ +++I+ L R+RY Sbjct: 175 PVNEIFREALKLVANGANEINLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIEKLERIRY 233 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTSHPRDM + L AH + LMP++HLPVQSGS++IL +MNR+HTA EY +IIDR R + Sbjct: 234 TTSHPRDMHESLYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEIIDRFRKL 293 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 +P+I SSDFIVGFPGET+ DF TM LV+K+ YAQA+SFKYSPR GTPG+ +QV E Sbjct: 294 KPEIEFSSDFIVGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAERKDQVPEE 353 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERLL LQK + +QQ+ FN + VG+ I VL +K GK + +++G+SP++QSV ++ Sbjct: 354 VKTERLLRLQKLISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCIDDSE 413 Query: 445 HNIGD-IIKVRITDVKISTLYG 465 D I+ V++ + + S+L G Sbjct: 414 DKYRDKIVNVKVLEARQSSLLG 435 >gi|197106915|ref|YP_002132292.1| 2-methylthioadenine synthetase [Phenylobacterium zucineum HLK1] gi|229890591|sp|B4RC70|MIAB_PHEZH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|196480335|gb|ACG79863.1| 2-methylthioadenine synthetase [Phenylobacterium zucineum HLK1] Length = 450 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 245/445 (55%), Positives = 317/445 (71%), Gaps = 9/445 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R ++K+YGCQMNVYDS RM D+ GY + ADL+VLNTCHIREKA EKVYS L Sbjct: 8 KRLYIKTYGCQMNVYDSERMADVLAPLGYGVTDDPAAADLVVLNTCHIREKATEKVYSEL 67 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G+I+ LK +R EG + + VAGCVAQAEGEEI+RR P V++VVGPQ Y++LPEL+ RA Sbjct: 68 GQIKRLKEARRAEGQGMTIAVAGCVAQAEGEEIMRRQPAVDLVVGPQAYHQLPELIARAH 127 Query: 145 F--GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+R+ D++ ++KF+ L+ R GVTAFLT+QEGCDKFCTFCVVPYTRG E Sbjct: 128 RARGERLA-ADFAPDEKFDALAT----ERRPTGVTAFLTVQEGCDKFCTFCVVPYTRGGE 182 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + EAR L GV E+TLLGQNVNA+ G +G+ + L+ L++I GL R Sbjct: 183 WSRPAEAIEAEARALAAKGVREVTLLGQNVNAY--DGANGQGAGLAGLVRRLAKIPGLDR 240 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHPRDM D LI AH ++ LMPYLHLPVQ+GSDRIL++MNR HTA Y ++I+++ Sbjct: 241 IRYTTSHPRDMDDDLIAAHAEVPELMPYLHLPVQAGSDRILRAMNRAHTAESYLRVIEKV 300 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDIAIS DFIVGFPGE + DF AT+ LV ++GYA FSFKYS R GTP + + QV Sbjct: 301 RVARPDIAISGDFIVGFPGEREADFEATLQLVREVGYASCFSFKYSRRPGTPAAALPGQV 360 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E VK ERL LQ L +QQ++FN A G+++ VL EK G+ G+L+GRSP+LQ+V ++ Sbjct: 361 AEEVKEERLQRLQALLEQQQLAFNAAQAGRVLPVLFEKTGRHPGQLIGRSPYLQAVHAHA 420 Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467 + IG I+ V++ ++L G L Sbjct: 421 PDRLIGQIVPVKVESGGRNSLAGVL 445 >gi|190571036|ref|YP_001975394.1| trna-i(6)a37 thiotransferase enzyme [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|229891026|sp|B3CLG9|MIAB_WOLPP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|190357308|emb|CAQ54737.1| trna-i(6)a37 thiotransferase enzyme [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 440 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 231/442 (52%), Positives = 318/442 (71%), Gaps = 11/442 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++K+YGCQMNVYDS+ ME++ G+ V+ + ADL++LNTCHIREKAAEK+YS LGR Sbjct: 4 LYIKTYGCQMNVYDSILMENIVKPLGFNVVSDAEQADLVILNTCHIREKAAEKLYSELGR 63 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 I + + ++ ++ +VVAGCVAQAEGEE+ RR+P V++VVGPQ+ LPEL+ +A Sbjct: 64 IHSSQKNK-----EMTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIPALPELIVKASRS 118 Query: 147 K-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 K V++TD+ KF++L D Y +G +AFL IQEGCDKFCTFCVVPYTRG E SR Sbjct: 119 KGHVINTDFPEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEYSR 176 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++++ EA L+ NG EITLLGQNVNA+ G+ +GE L+ +++I+ L R+RY Sbjct: 177 PVNEIFREALNLVKNGAKEITLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIEKLERIRY 235 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTSHPRDM + L H + LMP++HLPVQSGS++IL +MNR+HTA EY IIDR+R + Sbjct: 236 TTSHPRDMHESLYLVHAEESKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLGIIDRLRKL 295 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 +P+I SSDFIVGFPGET+ DF TM LV+K+ YAQA+SFKYSPR GTPG+ +QV E Sbjct: 296 KPEIEFSSDFIVGFPGETEKDFEETMKLVEKVKYAQAYSFKYSPRPGTPGAERKDQVPEE 355 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSV-VLNSK 443 VK ERLL LQ+ + +QQ+ FN + +G+ I VL +K GK + +++G+SP++QSV V + Sbjct: 356 VKTERLLRLQELISKQQLEFNQSMIGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCVDDPD 415 Query: 444 NHNIGDIIKVRITDVKISTLYG 465 + I+ VRI + + ++L G Sbjct: 416 DKYKDKIVNVRILEARQNSLLG 437 >gi|294676663|ref|YP_003577278.1| MiaB family RNA modification enzyme [Rhodobacter capsulatus SB 1003] gi|294475483|gb|ADE84871.1| RNA modification enzyme, MiaB family [Rhodobacter capsulatus SB 1003] Length = 439 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 234/450 (52%), Positives = 312/450 (69%), Gaps = 18/450 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ +K+YGCQMNVYDS RM + QGY + +AD+++LNTCHIREKAAEKVYS Sbjct: 4 APKKLHIKTYGCQMNVYDSERMAEAMGVQGYTLTDDPAEADMVLLNTCHIREKAAEKVYS 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR+R K ++ L + VAGCVAQAEG EI+RR P+V++VVG Q Y+RLPE++ Sbjct: 64 DLGRLRPFKEAKP----GLTIGVAGCVAQAEGAEIMRRMPLVDLVVGSQNYHRLPEMVAA 119 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV----TAFLTIQEGCDKFCTFCVVPYT 198 G+R VDT++ EDKFERL +R V TAFLT+QEGCDKFC FCVVPYT Sbjct: 120 VGRGERPVDTEFPAEDKFERLP--------ERPVQARPTAFLTVQEGCDKFCAFCVVPYT 171 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG EISR +++++ EA KL+ GV EITLLGQNVN + G G DG L+ +L+ I Sbjct: 172 RGAEISRPVARILTEAEKLVAKGVREITLLGQNVNGYHGDGPDG-SWGLGRLVRALARID 230 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+RYTTSHP DM++ LI AHGD LMPYLHLPVQSGSD ILK+MNR+HTA +Y ++ Sbjct: 231 GLDRIRYTTSHPNDMAEDLIAAHGDEPKLMPYLHLPVQSGSDPILKAMNRKHTAEDYLRL 290 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++R+R+ RPD+ +SSDFIVGFPGET+ D +A++DL+ +G+ AFSFKYSPR GTP ++ Sbjct: 291 VERLRAARPDLVLSSDFIVGFPGETEADHQASLDLIRAVGFGAAFSFKYSPRPGTPAASR 350 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 V V RL LQ + QQ + + VG+ + VL EK G+ G+ VG+S +L +V Sbjct: 351 TP-VAAEVADARLQELQALITAQQKATQLSMVGRKVGVLFEKPGRLPGQWVGKSDYLHAV 409 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + ++ G + +VRIT ++L GE++ Sbjct: 410 HVTAEGIGPGTLAQVRITASAPNSLAGEVL 439 >gi|260574833|ref|ZP_05842835.1| RNA modification enzyme, MiaB family [Rhodobacter sp. SW2] gi|259022838|gb|EEW26132.1| RNA modification enzyme, MiaB family [Rhodobacter sp. SW2] Length = 440 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 232/442 (52%), Positives = 307/442 (69%), Gaps = 10/442 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM + GY ++DAD++++NTCHIREKA+EK++S L Sbjct: 5 KKLFIKTYGCQMNVYDSERMVEALGVDGYVTTEVVEDADMVLINTCHIREKASEKLFSDL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR++ LK +R DL + VAGCVAQAEG EILRR P+V++VVGPQ+Y+RLP + A Sbjct: 65 GRLKPLKVAR----PDLKIGVAGCVAQAEGAEILRRMPLVDLVVGPQSYHRLPAMARAAG 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + +DTD+ EDKF+ L +RG AFLT+QEGCDKFC FCVVPYTRG E+S Sbjct: 121 QGAQAIDTDFPAEDKFDHLP----QRKAQRGPAAFLTVQEGCDKFCAFCVVPYTRGAEVS 176 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +S+++ EAR L+ GV E+TLLGQNVNA+ D + LL +++I GLVRLR Sbjct: 177 RPVSRLLAEARDLVGRGVREVTLLGQNVNAYHHVD-DAGTWGLARLLREMAQIDGLVRLR 235 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y TSHP DM D LI AHGDL L PYLHLPVQSGSDRIL++MNR+HTA +Y ++ R+R+ Sbjct: 236 YMTSHPNDMEDDLIAAHGDLPALAPYLHLPVQSGSDRILRAMNRKHTAAQYLALVARVRA 295 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDI ++SDFIVGFPGET+ DF AT+ L+ + + A+SFKYS R GTP + E VD Sbjct: 296 ARPDILLTSDFIVGFPGETEADFEATLALIRAVNFGMAYSFKYSARPGTPAAEKPE-VDP 354 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 V RL LQ L QQ + +A VG+ + VL EK G+ G++VG+S L +V + Sbjct: 355 AVADARLQRLQALLTAQQRAAQEAMVGREVSVLYEKKGRLPGQMVGKSDHLHAVHVTDPQ 414 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 +GD+++VRIT ++L GE Sbjct: 415 GAVGDLVRVRITAASSNSLAGE 436 >gi|58584621|ref|YP_198194.1| 2-methylthioadenine synthetase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418937|gb|AAW70952.1| 2-methylthioadenine synthetase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 448 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 230/444 (51%), Positives = 318/444 (71%), Gaps = 11/444 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++K+YGCQMNVYDS+ ME++ G+ VN ++ ADL++LNTCHIREKAAEK+YS L Sbjct: 8 KSLYIKTYGCQMNVYDSILMENIIKPLGFNVVNDVEKADLVILNTCHIREKAAEKLYSEL 67 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G+I + + ++ ++ +V AGCVAQAEGEEI RR+P V++VVGPQ+ LPEL+ +A Sbjct: 68 GKIHSSRKNK-----EITIVAAGCVAQAEGEEIFRRAPFVDIVVGPQSITTLPELIVKAS 122 Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K V++TD+ KF+RLS D Y +G +AFL+IQEGCDKFCTFCVVPYTRG E Sbjct: 123 RSKGHVINTDFPKVMKFDRLS--DECYGNSQGSSAFLSIQEGCDKFCTFCVVPYTRGAEY 180 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++++ EA KL+ NG EI LLGQNVNA+ G+ +GE L+ +++I+ L R+ Sbjct: 181 SRPVNEIFREALKLVANGAKEINLLGQNVNAYHGE-YEGEVWDLGKLISHIAKIEKLERI 239 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPRDM + L AH + LMP++HLPVQSGS++IL++MNR++T EY +II+R R Sbjct: 240 RYTTSHPRDMHESLYLAHAEAPKLMPFIHLPVQSGSNKILRAMNRKYTTEEYLEIIERFR 299 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++P I SSDFIVGFPGET+ DF T+ LV+++ YAQA+SFKYS R GTPG+ +QV Sbjct: 300 KLKPKIEFSSDFIVGFPGETEKDFEGTIKLVERVRYAQAYSFKYSTRPGTPGAERKDQVP 359 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNS 442 E VK ERLL LQK + +QQ+ FN + VG+ I VL K GK + +++G+SP++QSV ++ Sbjct: 360 EKVKTERLLHLQKLINKQQLEFNQSMVGKTIPVLFSNKKGKHQNQIIGKSPYMQSVCIDD 419 Query: 443 KNHNIGD-IIKVRITDVKISTLYG 465 D I+ VRI + ++L G Sbjct: 420 PEDKCRDKIVNVRILEAWQNSLLG 443 >gi|229891227|sp|Q5GSS2|MIAB_WOLTR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 442 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 230/444 (51%), Positives = 318/444 (71%), Gaps = 11/444 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++K+YGCQMNVYDS+ ME++ G+ VN ++ ADL++LNTCHIREKAAEK+YS L Sbjct: 2 KSLYIKTYGCQMNVYDSILMENIIKPLGFNVVNDVEKADLVILNTCHIREKAAEKLYSEL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G+I + + ++ ++ +V AGCVAQAEGEEI RR+P V++VVGPQ+ LPEL+ +A Sbjct: 62 GKIHSSRKNK-----EITIVAAGCVAQAEGEEIFRRAPFVDIVVGPQSITTLPELIVKAS 116 Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K V++TD+ KF+RLS D Y +G +AFL+IQEGCDKFCTFCVVPYTRG E Sbjct: 117 RSKGHVINTDFPKVMKFDRLS--DECYGNSQGSSAFLSIQEGCDKFCTFCVVPYTRGAEY 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++++ EA KL+ NG EI LLGQNVNA+ G+ +GE L+ +++I+ L R+ Sbjct: 175 SRPVNEIFREALKLVANGAKEINLLGQNVNAYHGE-YEGEVWDLGKLISHIAKIEKLERI 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPRDM + L AH + LMP++HLPVQSGS++IL++MNR++T EY +II+R R Sbjct: 234 RYTTSHPRDMHESLYLAHAEAPKLMPFIHLPVQSGSNKILRAMNRKYTTEEYLEIIERFR 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++P I SSDFIVGFPGET+ DF T+ LV+++ YAQA+SFKYS R GTPG+ +QV Sbjct: 294 KLKPKIEFSSDFIVGFPGETEKDFEGTIKLVERVRYAQAYSFKYSTRPGTPGAERKDQVP 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNS 442 E VK ERLL LQK + +QQ+ FN + VG+ I VL K GK + +++G+SP++QSV ++ Sbjct: 354 EKVKTERLLHLQKLINKQQLEFNQSMVGKTIPVLFSNKKGKHQNQIIGKSPYMQSVCIDD 413 Query: 443 KNHNIGD-IIKVRITDVKISTLYG 465 D I+ VRI + ++L G Sbjct: 414 PEDKCRDKIVNVRILEAWQNSLLG 437 >gi|68171116|ref|ZP_00544525.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification enzyme MiaB [Ehrlichia chaffeensis str. Sapulpa] gi|67999441|gb|EAM86081.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification enzyme MiaB [Ehrlichia chaffeensis str. Sapulpa] Length = 442 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 224/448 (50%), Positives = 318/448 (70%), Gaps = 12/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q ++KSYGCQMNVYDSL ME++ G+ VN +A++++LNTCHIREKA+EK+YS L Sbjct: 2 QGLYIKSYGCQMNVYDSLIMENIIKPLGFTVVNEPSEANIVILNTCHIREKASEKLYSEL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G++R +I+E DL +VVAGCVAQAEGE+I R+P V++VVGPQ+ + LPEL+ +AR Sbjct: 62 GKMR-----KIQETKDLTIVVAGCVAQAEGEQIFARAPFVDIVVGPQSIHTLPELIIKAR 116 Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K+V++ D+ + KF+ + + + Y + + V+AF+++QEGC+KFCTFCVVPYTRG E Sbjct: 117 RMKKQVINIDFPIISKFDAIPVEE--YTKNQEVSAFISVQEGCNKFCTFCVVPYTRGEEY 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR++ + +EA L D+GV EITL+GQNVNA+ G G + L+ L++I + R+ Sbjct: 175 SRTVEAIFNEALVLSDSGVKEITLIGQNVNAYHGT-YKGCEWDLGKLIQYLAKIPNIERI 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPRDM L +AH LMP++HLP+QSGSDRILK MNR+HTA EY II+ +R Sbjct: 234 RYTTSHPRDMHQSLYEAHRSETKLMPFVHLPIQSGSDRILKKMNRKHTAEEYIDIINNLR 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 RPDIA SSDFIVGFPGET++DF TM LV ++ ++QA+SFKYSPR GTP + Q+ Sbjct: 294 KQRPDIAFSSDFIVGFPGETEEDFEHTMKLVQEVNFSQAYSFKYSPRPGTPSAEYPNQIP 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNS 442 E +K++R+ LQ+ LREQQ++FN +GQ VL K GK +++G++ ++QS +N+ Sbjct: 354 EEIKSQRIFRLQELLREQQLAFNRNMIGQTCSVLFNNKKGKFDNQIIGKTEYMQSCYINT 413 Query: 443 KNHN--IGDIIKVRITDVKISTLYGELV 468 N N I+ ++I D +++ G +V Sbjct: 414 DNPNQFYNSILPIKIIDAYQNSVTGIVV 441 >gi|88658201|ref|YP_507633.1| tRNA-i(6)A37 modification enzyme MiaB [Ehrlichia chaffeensis str. Arkansas] gi|123763750|sp|Q2GG00|MIAB_EHRCR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|88599658|gb|ABD45127.1| tRNA-i(6)A37 modification enzyme MiaB [Ehrlichia chaffeensis str. Arkansas] Length = 442 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 224/448 (50%), Positives = 318/448 (70%), Gaps = 12/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q ++KSYGCQMNVYDSL ME++ G+ VN +A++++LNTCHIREKA+EK+YS L Sbjct: 2 QGLYIKSYGCQMNVYDSLIMENIIKPLGFTVVNEPSEANIVILNTCHIREKASEKLYSEL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G++R +I+E DL +VVAGCVAQAEGE+I R+P V++VVGPQ+ + LPEL+ +AR Sbjct: 62 GKMR-----KIQETKDLTIVVAGCVAQAEGEQIFARAPFVDIVVGPQSIHTLPELIIKAR 116 Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K+V++ D+ + KF+ + + + Y + + V+AF+++QEGC+KFCTFCVVPYTRG E Sbjct: 117 RMKKQVINIDFPIISKFDAIPVEE--YTKNQEVSAFISVQEGCNKFCTFCVVPYTRGEEY 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR++ + +EA L D+GV EITL+GQNVNA+ G G + L+ L++I + R+ Sbjct: 175 SRTVEAIFNEALVLSDSGVKEITLIGQNVNAYHGT-YKGCEWDLGKLIQYLAKIPNIERI 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPRDM L +AH LMP++HLP+QSGSDRILK MNR+HTA EY II+ +R Sbjct: 234 RYTTSHPRDMHQSLYEAHRSETKLMPFVHLPIQSGSDRILKKMNRKHTAEEYIDIINNLR 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 RPDIA SSDFIVGFPGET++DF TM LV ++ ++QA+SFKYSPR GTP + Q+ Sbjct: 294 KQRPDIAFSSDFIVGFPGETEEDFEHTMKLVQEVNFSQAYSFKYSPRPGTPSAEYPNQIP 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNS 442 E +K++R+ LQ+ LREQQ++FN +GQ VL K GK +++G++ ++QS +N+ Sbjct: 354 EEIKSQRIFRLQELLREQQLAFNRNMIGQTCSVLFNNKKGKFDNQIIGKTEYMQSCYINT 413 Query: 443 KNHN--IGDIIKVRITDVKISTLYGELV 468 N N I+ ++I D +++ G +V Sbjct: 414 DNTNQFYNSILPIKIIDAYQNSVTGIVV 441 >gi|58698340|ref|ZP_00373255.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Wolbachia endosymbiont of Drosophila ananassae] gi|58535130|gb|EAL59214.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Wolbachia endosymbiont of Drosophila ananassae] Length = 427 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 228/433 (52%), Positives = 309/433 (71%), Gaps = 13/433 (3%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNVYDS+ ME++ G+ V+ ADL++LNTCHIREKAAEK+YS LG+I +L+ Sbjct: 1 MNVYDSVLMENVIKPLGFNVVSDAGKADLVILNTCHIREKAAEKLYSELGKIHSLRK--- 57 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDY 154 ++ +VVAGCVAQAEGEE+ RR+P V++VVGPQ+ LPEL+ +A K V++TD+ Sbjct: 58 ----EMTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIATLPELIVKASRSKGHVINTDF 113 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 KF++L D Y +G +AFL IQEGCDKFCTFCVVPYTRG E SR ++++ EA Sbjct: 114 PEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEYSRPVNEIFREA 171 Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274 KL+ NG EI LLGQNVNA+ G+ +GE L+ +++I+ L R+RYTTSHPRDM Sbjct: 172 LKLVANGANEINLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIEKLERIRYTTSHPRDMH 230 Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334 + L AH + LMP++HLPVQSGS++IL +MNR+HTA EY +IIDR R ++P+I SSD Sbjct: 231 ESLYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEIIDRFRKLKPEIEFSSD 290 Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394 FIVGFPGET+ DF TM LV+K+ YAQA+SFKYSPR GTPG+ +QV E VK ERLL L Sbjct: 291 FIVGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAERKDQVPEEVKTERLLRL 350 Query: 395 QKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD-IIK 452 QK + +QQ+ FN + VG+ I VL +K GK + +++G+SP++QSV ++ D I+ Sbjct: 351 QKLISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCIDDSEDKYRDKIVN 410 Query: 453 VRITDVKISTLYG 465 V++ + + S+L G Sbjct: 411 VKVLEARQSSLLG 423 >gi|58616989|ref|YP_196188.1| hypothetical protein ERGA_CDS_02620 [Ehrlichia ruminantium str. Gardel] gi|58416601|emb|CAI27714.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] Length = 450 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/444 (48%), Positives = 317/444 (71%), Gaps = 11/444 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q ++KSYGCQMNVYDSL +E++ G+ VN + +AD+++LNTCHIREKAAEK+YS L Sbjct: 7 QGLYIKSYGCQMNVYDSLIIENIIKPLGFSIVNELSEADIVILNTCHIREKAAEKLYSEL 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GRIR +I+E +L +VVAGCVAQAEG EI R+P V++VVGPQ+ + LPEL+ +AR Sbjct: 67 GRIR-----KIQETKNLTIVVAGCVAQAEGTEIFTRAPFVDIVVGPQSIHTLPELIVKAR 121 Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K++++ D+ V KF+ +++ + Y + + V+AF+++QEGC+KFC+FCVVPYTRG E Sbjct: 122 KIKKQIINIDFPVISKFDAIAVEE--YTKNQKVSAFISVQEGCNKFCSFCVVPYTRGEEY 179 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR++ + EA L D+G+ EITL+GQNVNA+ G G + L+ +++I + R+ Sbjct: 180 SRTVEAIFKEALILADSGIKEITLIGQNVNAYHGT-YKGNEWDLGRLIQHIAKISSIERI 238 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 YTTSHPRDM + L +AHG L+P++HLPVQSGS++IL+ MNR+HTA EY II +R Sbjct: 239 YYTTSHPRDMHESLYEAHGIEKKLIPFIHLPVQSGSNKILRKMNRKHTAEEYINIIKTLR 298 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 R DIA SSDFIVGFPGETD+DF T+ L++++ ++QA+SFKYSPR GTP + Q+ Sbjct: 299 KHRSDIAYSSDFIVGFPGETDEDFENTIRLIEEVKFSQAYSFKYSPRPGTPSAEYTSQIP 358 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + +K++RL LQ+ + +QQ+ FN +G+ VL K GK +++G++P++QS +N++ Sbjct: 359 DEIKSQRLTKLQELVHKQQLEFNKKMIGETHPVLFYKKGKFDNQIIGKTPYMQSCYINTE 418 Query: 444 NHNI--GDIIKVRITDVKISTLYG 465 N ++ I+ ++ITD + L G Sbjct: 419 NPDLYYNKIVPIKITDAHKNHLTG 442 >gi|229890687|sp|Q5FHD1|MIAB_EHRRG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 445 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/444 (48%), Positives = 317/444 (71%), Gaps = 11/444 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q ++KSYGCQMNVYDSL +E++ G+ VN + +AD+++LNTCHIREKAAEK+YS L Sbjct: 2 QGLYIKSYGCQMNVYDSLIIENIIKPLGFSIVNELSEADIVILNTCHIREKAAEKLYSEL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GRIR +I+E +L +VVAGCVAQAEG EI R+P V++VVGPQ+ + LPEL+ +AR Sbjct: 62 GRIR-----KIQETKNLTIVVAGCVAQAEGTEIFTRAPFVDIVVGPQSIHTLPELIVKAR 116 Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K++++ D+ V KF+ +++ + Y + + V+AF+++QEGC+KFC+FCVVPYTRG E Sbjct: 117 KIKKQIINIDFPVISKFDAIAVEE--YTKNQKVSAFISVQEGCNKFCSFCVVPYTRGEEY 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR++ + EA L D+G+ EITL+GQNVNA+ G G + L+ +++I + R+ Sbjct: 175 SRTVEAIFKEALILADSGIKEITLIGQNVNAYHGT-YKGNEWDLGRLIQHIAKISSIERI 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 YTTSHPRDM + L +AHG L+P++HLPVQSGS++IL+ MNR+HTA EY II +R Sbjct: 234 YYTTSHPRDMHESLYEAHGIEKKLIPFIHLPVQSGSNKILRKMNRKHTAEEYINIIKTLR 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 R DIA SSDFIVGFPGETD+DF T+ L++++ ++QA+SFKYSPR GTP + Q+ Sbjct: 294 KHRSDIAYSSDFIVGFPGETDEDFENTIRLIEEVKFSQAYSFKYSPRPGTPSAEYTSQIP 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + +K++RL LQ+ + +QQ+ FN +G+ VL K GK +++G++P++QS +N++ Sbjct: 354 DEIKSQRLTKLQELVHKQQLEFNKKMIGETHPVLFYKKGKFDNQIIGKTPYMQSCYINTE 413 Query: 444 NHNI--GDIIKVRITDVKISTLYG 465 N ++ I+ ++ITD + L G Sbjct: 414 NPDLYYNKIVPIKITDAHKNHLTG 437 >gi|304320422|ref|YP_003854065.1| hypothetical protein PB2503_04242 [Parvularcula bermudensis HTCC2503] gi|303299324|gb|ADM08923.1| hypothetical protein PB2503_04242 [Parvularcula bermudensis HTCC2503] Length = 431 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 233/432 (53%), Positives = 294/432 (68%), Gaps = 14/432 (3%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNVYDS RM + GY + D+ADL++LNTCHIREKAAEKVYS LGR+ +K Sbjct: 1 MNVYDSERMTGLLRPLGYSPTANPDEADLVILNTCHIREKAAEKVYSELGRLTEVK---- 56 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGKRVVDTDY 154 GG + VAGCVAQAEG+EI R+P V++V GPQ+Y+ LPEL+ + AR ++TD+ Sbjct: 57 ARGGK--IAVAGCVAQAEGKEIKARAPQVDLVFGPQSYHHLPELIAKSAREAGLALETDF 114 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 + +KF+ L+ +G + G AF+TIQEGCDKFCTFCVVPYTRG E+SR + E Sbjct: 115 AAVEKFDALA--EG--RQADGYAAFVTIQEGCDKFCTFCVVPYTRGAEVSRGTDAIAAEV 170 Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDG---EKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271 R L GV EITLLGQNVNAWRG G + L L++I G+ R+R+TTSHP Sbjct: 171 RDLAAQGVVEITLLGQNVNAWRGAAPAGATQDSLGLGGLCRHLAQIDGIERIRFTTSHPA 230 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 DM D LI A D LMPYLHLPVQSG+DRILK+MNRRHTA Y ++I+RIR RPDIAI Sbjct: 231 DMDDELIAAFADEPKLMPYLHLPVQSGADRILKAMNRRHTADTYIRMIERIRQARPDIAI 290 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391 S D IVGFPGE + F T+ LV+ + YA FSFKYS R GTPG+ + +QV E++KAERL Sbjct: 291 SGDMIVGFPGEDEGAFEETLALVEAVEYASCFSFKYSRRPGTPGATLPKQVAEDIKAERL 350 Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDII 451 LQ L Q+ FN VG+I+ VL EK G+E G+LVGRSP+LQ+V +H +G I+ Sbjct: 351 QRLQALLERQKQHFNAQQVGKILPVLFEKPGREAGQLVGRSPYLQAVFAPLPDHALGQIV 410 Query: 452 KVRITDVKISTL 463 VRI + ++L Sbjct: 411 PVRILSTRPNSL 422 >gi|57238993|ref|YP_180129.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ehrlichia ruminantium str. Welgevonden] gi|81637928|sp|Q5HBR5|MIAB_EHRRW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|57161072|emb|CAH57979.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 445 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/444 (48%), Positives = 316/444 (71%), Gaps = 11/444 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q ++KSYGCQMNVYDSL +E++ G+ VN +AD+++LNTCHIREKAAEK+YS L Sbjct: 2 QGLYIKSYGCQMNVYDSLIIENIIKPLGFSIVNEPSEADIVILNTCHIREKAAEKLYSEL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GRIR +I+E +L +VVAGCVAQAEG EI R+P V++VVGPQ+ + LPEL+ +AR Sbjct: 62 GRIR-----KIQETKNLTIVVAGCVAQAEGTEIFTRAPFVDIVVGPQSIHTLPELIVKAR 116 Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K++++ D+ V KF+ +++ + Y + + V+AF+++QEGC+KFC+FCVVPYTRG E Sbjct: 117 KIKKQIINIDFPVISKFDAIAVEE--YTKNQKVSAFISVQEGCNKFCSFCVVPYTRGEEY 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR++ + EA L D+G+ EITL+GQNVNA+ G G + L+ +++I + R+ Sbjct: 175 SRTVEAIFKEALILADSGIKEITLIGQNVNAYHGT-YKGNEWDLGRLIQHIAKISSIERI 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 YTTSHPRDM + L +AHG L+P++HLPVQSGS++IL+ MNR+HTA EY II +R Sbjct: 234 YYTTSHPRDMHESLYEAHGIEKKLIPFIHLPVQSGSNKILRKMNRKHTAEEYINIIKTLR 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 R DIA SSDFIVGFPGETD+DF T+ L++++ ++QA+SFKYSPR GTP + Q+ Sbjct: 294 KHRSDIAYSSDFIVGFPGETDEDFENTIQLIEEVKFSQAYSFKYSPRPGTPSAEYTSQIP 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + +K++RL LQ+ + +QQ+ FN +G+ VL K GK +++G++P++QS +N++ Sbjct: 354 DEIKSQRLTKLQELVHKQQLEFNKKMIGETHPVLFYKKGKFDNQIIGKTPYMQSCYINTE 413 Query: 444 NHNI--GDIIKVRITDVKISTLYG 465 N ++ I+ ++ITD + L G Sbjct: 414 NPDLYYNKIVPIKITDAHKNHLTG 437 >gi|58578929|ref|YP_197141.1| hypothetical protein ERWE_CDS_02650 [Ehrlichia ruminantium str. Welgevonden] gi|58417555|emb|CAI26759.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 450 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/444 (48%), Positives = 316/444 (71%), Gaps = 11/444 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q ++KSYGCQMNVYDSL +E++ G+ VN +AD+++LNTCHIREKAAEK+YS L Sbjct: 7 QGLYIKSYGCQMNVYDSLIIENIIKPLGFSIVNEPSEADIVILNTCHIREKAAEKLYSEL 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GRIR +I+E +L +VVAGCVAQAEG EI R+P V++VVGPQ+ + LPEL+ +AR Sbjct: 67 GRIR-----KIQETKNLTIVVAGCVAQAEGTEIFTRAPFVDIVVGPQSIHTLPELIVKAR 121 Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K++++ D+ V KF+ +++ + Y + + V+AF+++QEGC+KFC+FCVVPYTRG E Sbjct: 122 KIKKQIINIDFPVISKFDAIAVEE--YTKNQKVSAFISVQEGCNKFCSFCVVPYTRGEEY 179 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR++ + EA L D+G+ EITL+GQNVNA+ G G + L+ +++I + R+ Sbjct: 180 SRTVEAIFKEALILADSGIKEITLIGQNVNAYHGT-YKGNEWDLGRLIQHIAKISSIERI 238 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 YTTSHPRDM + L +AHG L+P++HLPVQSGS++IL+ MNR+HTA EY II +R Sbjct: 239 YYTTSHPRDMHESLYEAHGIEKKLIPFIHLPVQSGSNKILRKMNRKHTAEEYINIIKTLR 298 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 R DIA SSDFIVGFPGETD+DF T+ L++++ ++QA+SFKYSPR GTP + Q+ Sbjct: 299 KHRSDIAYSSDFIVGFPGETDEDFENTIQLIEEVKFSQAYSFKYSPRPGTPSAEYTSQIP 358 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + +K++RL LQ+ + +QQ+ FN +G+ VL K GK +++G++P++QS +N++ Sbjct: 359 DEIKSQRLTKLQELVHKQQLEFNKKMIGETHPVLFYKKGKFDNQIIGKTPYMQSCYINTE 418 Query: 444 NHNI--GDIIKVRITDVKISTLYG 465 N ++ I+ ++ITD + L G Sbjct: 419 NPDLYYNKIVPIKITDAHKNHLTG 442 >gi|213019557|ref|ZP_03335363.1| trna-i(6)a37 thiotransferase enzyme [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994979|gb|EEB55621.1| trna-i(6)a37 thiotransferase enzyme [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 428 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 226/433 (52%), Positives = 310/433 (71%), Gaps = 11/433 (2%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNVYDS+ ME++ G+ V+ + ADL++LNTCHIREKAAEK+YS LGRI + + ++ Sbjct: 1 MNVYDSILMENIVKPLGFNVVSDAEQADLVILNTCHIREKAAEKLYSELGRIHSSQKNK- 59 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDY 154 ++ +VVAGCVAQAEGEE+ RR+P V++VVGPQ+ LPEL+ +A K V++TD+ Sbjct: 60 ----EMTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIPALPELIVKASRSKGHVINTDF 115 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 KF++L D Y +G +AFL IQEGCDKFCTFCVVPYTRG E SR ++++ EA Sbjct: 116 PEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEYSRPVNEIFREA 173 Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274 L+ NG EITLLGQNVNA+ G+ +GE L+ +++I+ L R+RYTTSHPRDM Sbjct: 174 LNLVKNGAKEITLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIEKLERIRYTTSHPRDMH 232 Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334 + L H + LMP++HLPVQSGS++IL +MNR+HTA EY IIDR+R ++P+I SSD Sbjct: 233 ESLYLVHAEESKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLGIIDRLRKLKPEIEFSSD 292 Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394 FIVGFPGET+ DF TM LV+K+ YAQA+SFKYSPR GTPG+ +QV E VK ERLL L Sbjct: 293 FIVGFPGETEKDFEETMKLVEKVKYAQAYSFKYSPRPGTPGAERKDQVPEEVKTERLLRL 352 Query: 395 QKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSV-VLNSKNHNIGDIIK 452 Q+ + +QQ+ FN + +G+ I VL +K GK + +++G+SP++QSV V + + I+ Sbjct: 353 QELISKQQLEFNQSMIGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCVDDPDDKYKDKIVN 412 Query: 453 VRITDVKISTLYG 465 VRI + + ++L G Sbjct: 413 VRILEARQNSLLG 425 >gi|73666881|ref|YP_302897.1| 2-methylthioadenine synthetase [Ehrlichia canis str. Jake] gi|123759460|sp|Q3YSK6|MIAB_EHRCJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|72394022|gb|AAZ68299.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ehrlichia canis str. Jake] Length = 441 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 230/443 (51%), Positives = 317/443 (71%), Gaps = 12/443 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++KSYGCQMNVYDSL ME++ G+ V+ +AD+++LNTCHIREKA+EK+YS LG+ Sbjct: 4 LYIKSYGCQMNVYDSLIMENIIKPLGFTVVSEPSEADVVILNTCHIREKASEKLYSELGK 63 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-RF 145 IR +I+E DL +VVAGCVAQAEGEEI RSP V++VVGPQ+ + LPELL +A R Sbjct: 64 IR-----KIQENKDLTIVVAGCVAQAEGEEIFERSPFVDIVVGPQSIHTLPELLVKAHRI 118 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 K+V++ D+ V KF+ + + + Y + + +AF+++QEGC+KFCTFCVVPYTRG E SR Sbjct: 119 KKQVINIDFPVISKFDAIPVEE--YTKNQETSAFISVQEGCNKFCTFCVVPYTRGEEYSR 176 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ + +EA L D+G+ EITL+GQNVNA+ G G + L+ +++I + R+RY Sbjct: 177 TVEAIFNEALVLADSGIKEITLIGQNVNAYHGT-YKGCEWDLGKLIQHIAKIPNIERIRY 235 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTSHPRDM L +AH + LMP++HLPVQSGSDRILK MNR+HTA EY II +R Sbjct: 236 TTSHPRDMHQSLYEAHKLEEKLMPFVHLPVQSGSDRILKKMNRKHTAEEYIDIISHLRKQ 295 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RPDIA SSDFIVGFPGET++DF T+ LV+K+ ++QA+SFKYSPR GTPG+ QV E Sbjct: 296 RPDIAFSSDFIVGFPGETEEDFENTIKLVEKVKFSQAYSFKYSPRPGTPGAEYPNQVPEE 355 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKN 444 +K+ERLL LQK LREQQ++FN + +G+ VL K GK +++G++ ++QS +N+ N Sbjct: 356 IKSERLLRLQKLLREQQLAFNRSMIGETCTVLFSSKKGKFDNQIIGKTAYMQSCYINTDN 415 Query: 445 HN--IGDIIKVRITDVKISTLYG 465 + I ++I D ++L G Sbjct: 416 PSQFYNSISPIKIIDAHQNSLTG 438 >gi|148284092|ref|YP_001248182.1| MiaB-like tRNA modifying enzyme [Orientia tsutsugamushi str. Boryong] gi|229890582|sp|A5CC78|MIAB_ORITB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|146739531|emb|CAM79253.1| MiaB-like tRNA modifying enzyme [Orientia tsutsugamushi str. Boryong] Length = 449 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 221/446 (49%), Positives = 310/446 (69%), Gaps = 10/446 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++K+YGCQMNVYDS RM D+ +QGY V +M DA +I+LNTCHIREKA+EK+YS LGR Sbjct: 5 LYIKTYGCQMNVYDSNRMVDLLETQGYNIVANMADASVIILNTCHIREKASEKMYSELGR 64 Query: 87 IRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I+ L+ SR+K G ++VAGCV QAEGEEI R P VN++VGPQ+YY LP +LE+ Sbjct: 65 IKKLQQSRLKAGKSKAKIIVAGCVGQAEGEEIFIREPAVNIIVGPQSYYNLPTMLEKLDS 124 Query: 146 G--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G ++D D+ KF +L V + V+ +++QEGCDKFCTFCVVPYTRG E Sbjct: 125 GTENHLIDLDFVEAAKFNKLPEVL----KSPTVSGLVSVQEGCDKFCTFCVVPYTRGAEF 180 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR L QV E + G E+ L+GQNV+A+ GK +G++C+ +DL+ +++I + R+ Sbjct: 181 SRPLEQVYREVLNIAQQGAKEVVLVGQNVSAYHGKDENGKECSLADLIKYVAKIDKIKRI 240 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY TSHP DM+D L+ H + LMP+LHLPVQSGS++ILK MNRRHT Y +II ++R Sbjct: 241 RYITSHPNDMTDQLLSLHATEEKLMPFLHLPVQSGSNKILKLMNRRHTRERYLEIIQQLR 300 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +RPDI ISSD IVGFPGE D+DF AT+ L + + Q +SFKYS R GTP + + +Q+ Sbjct: 301 ELRPDIVISSDIIVGFPGEDDEDFEATLSLAKEAKFGQCYSFKYSQRPGTPAA-VKQQIS 359 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV-VLNS 442 E VK RL LQ +L QQ+ N +G+++ VL ++ GK G+++G++P++QSV ++N Sbjct: 360 EEVKQHRLSILQAQLMLQQLECNQKLIGKVVPVLFDRDGKYDGQIIGKTPYMQSVCIMNE 419 Query: 443 KNHNI-GDIIKVRITDVKISTLYGEL 467 K++N+ G I+ V+I S+L+GE+ Sbjct: 420 KDNNLYGKIVNVKILSASASSLFGEV 445 >gi|189184684|ref|YP_001938469.1| tRNA-methylthiotransferase MiaB protein [Orientia tsutsugamushi str. Ikeda] gi|229890583|sp|B3CV38|MIAB_ORITI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|189181455|dbj|BAG41235.1| tRNA-methylthiotransferase MiaB protein [Orientia tsutsugamushi str. Ikeda] Length = 449 Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust. Identities = 220/446 (49%), Positives = 311/446 (69%), Gaps = 10/446 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++K+YGCQMNVYDS RM D+ +QGY V +M DA +I+LNTCHIREKA+EK+YS LGR Sbjct: 5 LYIKTYGCQMNVYDSNRMVDLLETQGYNIVANMADASVIILNTCHIREKASEKMYSELGR 64 Query: 87 IRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I+ L+ SR+K G ++VAGCV QAEGEEI R P VN++VGPQ+YY LP +LE+ Sbjct: 65 IKKLQQSRLKAGKSKAKIIVAGCVGQAEGEEIFIREPAVNIIVGPQSYYNLPTMLEKLDS 124 Query: 146 G--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G ++D D+ KF +L V + V+ +++QEGCDKFCTFCVVPYTRG E Sbjct: 125 GTENHLIDLDFVEAAKFNKLPEV----LKSPTVSGLVSVQEGCDKFCTFCVVPYTRGAEF 180 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR L QV E + G E+ L+GQNV+A+ GK +G++C+ +DL+ +++I + R+ Sbjct: 181 SRPLEQVYREVLNIAQQGAKEVVLVGQNVSAYHGKDENGKECSLADLIKYVAKIDKIKRI 240 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY TSHP DM+D L+ H + LMP+LHLPVQSGS++ILK MNRRH+ Y +II ++R Sbjct: 241 RYITSHPNDMTDQLLSLHATEEKLMPFLHLPVQSGSNKILKLMNRRHSRERYLEIIQQLR 300 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +RPDI ISSD IVGFPGE D+DF AT+ L + + Q +SFKYS R GTP + + +Q+ Sbjct: 301 ELRPDIVISSDIIVGFPGEDDEDFEATLSLAKEARFGQCYSFKYSQRPGTPAA-VKQQIS 359 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV-VLNS 442 E VK RL LQ +L +QQ+ N +G+++ VL ++ GK G+++G++P++QSV ++N Sbjct: 360 EEVKQHRLSILQAQLMQQQLECNQKLIGKVVPVLFDRDGKYDGQIIGKTPYMQSVCIMNE 419 Query: 443 KNHNI-GDIIKVRITDVKISTLYGEL 467 K++N+ G I+ V+I S+L+GE+ Sbjct: 420 KDNNLYGKIVNVKILTASASSLFGEV 445 >gi|88606847|ref|YP_505456.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaplasma phagocytophilum HZ] gi|123494765|sp|Q2GJJ5|MIAB_ANAPZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|88597910|gb|ABD43380.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaplasma phagocytophilum HZ] Length = 444 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 208/448 (46%), Positives = 307/448 (68%), Gaps = 18/448 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++SYGCQMNVYD+L MED+ GY V+ +DAD+I++NTCHIREKA+EK+YS LGR Sbjct: 5 LYIESYGCQMNVYDALMMEDLLRPVGYAAVSRPEDADIILINTCHIREKASEKLYSTLGR 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R +K + +++VAGCVAQAEGE + R+P VNVVVGPQ + LPEL+ + + Sbjct: 65 MRVIKKE------ECILIVAGCVAQAEGEAVFERAPYVNVVVGPQGLHTLPELIMKVKRD 118 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K+ ++ ++ V KF+ +SI +RK GV+A+++IQEGCDKFCTFCVVPYTRG E S Sbjct: 119 KKQINIEFPVVSKFDAISI-----DRKANGGVSAYVSIQEGCDKFCTFCVVPYTRGPEYS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + +++E ++L D G EI L+GQNVNA+ G G + L+ +S I G+ R+R Sbjct: 174 RDVEAILEEVKQLTDRGTKEIVLIGQNVNAYHGT-YKGNEWDLGKLIQKVSLIDGVERIR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 YTTSHPRDM L +AH D L P++HLPVQSGSD IL+ MNR+HTA EY +++++++ Sbjct: 233 YTTSHPRDMHPSLYEAHRDEKKLAPFVHLPVQSGSDAILRKMNRKHTAEEYLRVVEQLKD 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 ++A+SSDFIVGFPGET+ DF TM LV+ +G+A ++SFKYSPR GTPG+ QV E Sbjct: 293 SNKNMALSSDFIVGFPGETEKDFEETMKLVESVGFALSYSFKYSPRPGTPGAEYSNQVPE 352 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSK 443 K+ RL LQ L +QQ+ FN + G++++VL+ + ++ G+S + QS+ +++ Sbjct: 353 EEKSARLAALQGLLTKQQLQFNKSMEGRVMDVLVGDPSSMRSDRIFGKSEYTQSIHISAP 412 Query: 444 NHN---IGDIIKVRITDVKISTLYGELV 468 + + +++V I + ++L G ++ Sbjct: 413 SGSEDCFNRMVRVEILHGRQNSLEGTVL 440 >gi|218659687|ref|ZP_03515617.1| putative 2-methylthioadenine synthetase (miaB-like) protein [Rhizobium etli IE4771] Length = 277 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/276 (70%), Positives = 229/276 (82%) Query: 66 VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125 +LNTCHIREKAAEKVYS LGR+R +K + +G ++++ VAGCVAQAEGEEILRR+P V+ Sbjct: 1 LLNTCHIREKAAEKVYSALGRLREMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVD 60 Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185 VV+GPQTY+RLPE L RA+ G+RVVDT+Y++EDKFE L I + R RGVTAFLT+QEG Sbjct: 61 VVIGPQTYHRLPEALRRAKQGQRVVDTEYAIEDKFEHLPIAESRKIRARGVTAFLTVQEG 120 Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245 CDKFCTFCVVPYTRG E+SR ++Q+V+EA KL + GV EITLLGQNVNAW G G GE Sbjct: 121 CDKFCTFCVVPYTRGSEVSRPVTQIVEEAEKLAEAGVREITLLGQNVNAWHGAGPRGEAW 180 Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 + DLLY L+EI GL RLRYTTSHPRDM D LI+AH DL LMPYLHLPVQSGSDRILK+ Sbjct: 181 SLGDLLYRLAEIPGLARLRYTTSHPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKA 240 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341 MNRRHTA EY +I+RIR++RPDIA+S DFI GFPG Sbjct: 241 MNRRHTAAEYLSLIERIRTIRPDIALSGDFITGFPG 276 >gi|88608596|ref|YP_506702.1| tRNA-i(6)A37 modification enzyme MiaB [Neorickettsia sennetsu str. Miyayama] gi|123763693|sp|Q2GCU4|MIAB_NEOSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|88600765|gb|ABD46233.1| tRNA-i(6)A37 modification enzyme MiaB [Neorickettsia sennetsu str. Miyayama] Length = 471 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 223/445 (50%), Positives = 298/445 (66%), Gaps = 18/445 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F +K+YGCQMNVYDS +E + G+ +DADLI+LNTC+IREKAAEK+YS L Sbjct: 29 KKFHIKTYGCQMNVYDSEMIEKIVSGLGFTLSERAEDADLIILNTCNIREKAAEKLYSEL 88 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143 G+IR L+ K+ +L+VVAGCVAQAEGEEI+RR+ V+VVVGPQ+ + LPEL+ + Sbjct: 89 GQIRLLQK---KKQERILIVVAGCVAQAEGEEIMRRAENVDVVVGPQSIHSLPELIAKVN 145 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRG 200 R + + ++ +KF+ L+ RKR V +AFL+IQEGCDKFC FCVVPYTRG Sbjct: 146 RQSGKAIKMEFDPIEKFDYLA----EETRKRRVPQSSAFLSIQEGCDKFCAFCVVPYTRG 201 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKG 259 E SRS +V EA L GV EITLLGQNVN + G G K L+ L +I Sbjct: 202 AEYSRSTEEVYREALSLTTKGVKEITLLGQNVNGYHGTLDSGNKVLNLGQLISRLGKIPS 261 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+RYTTSHP DM L AH + LMP++HLPVQSGSD+ILK MNR++T +Y +II Sbjct: 262 LKRIRYTTSHPVDMHKELYDAHANESKLMPFVHLPVQSGSDKILKQMNRKYTTADYLKII 321 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + ++ R DIA SSDFIVGFPGE+DDDF+ T+ L++++ YAQ +SFKYSPR GTPG+ Sbjct: 322 NEFQNARSDIAFSSDFIVGFPGESDDDFQQTLALIEQVNYAQCYSFKYSPRPGTPGAT-Y 380 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 Q+ E K RL LQ+ L+E+Q+ FN +G+ + VL +K K K+ GR+ ++Q V Sbjct: 381 PQISEETKNTRLQKLQQLLKEKQLEFNKKMIGKTVTVLFDK--KHPDKISGRTEYMQQVF 438 Query: 440 LNSKNHNIGD-IIKVRITDVKISTL 463 S + N+ D I+ +R+ D TL Sbjct: 439 --SDDSNLLDKIVTMRVEDASTFTL 461 >gi|254456428|ref|ZP_05069857.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Pelagibacter sp. HTCC7211] gi|207083430|gb|EDZ60856.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Pelagibacter sp. HTCC7211] Length = 442 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 202/445 (45%), Positives = 306/445 (68%), Gaps = 14/445 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ F+K++GCQMN YDS R+ D G+++ ++A+ +LNTCHIR+KA EKVY + Sbjct: 3 QKIFIKTFGCQMNEYDSNRIYDSVKKIGFQKTEKYEEANCYLLNTCHIRDKAKEKVYHEI 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE-LLERA 143 GR++ + S+ K LV++AGCVAQAE +E+L+R P +++V+GPQ+Y+++ + +L Sbjct: 63 GRVKKIFRSKQKP----LVIIAGCVAQAENQEMLKREPYIDLVIGPQSYHKINDTILNHI 118 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K++ +T++ KF+ L+ ++ N +++FLTIQEGCDKFC FCVVPYTRG E Sbjct: 119 EKKKKIEETEFDAISKFDYLNKIN---NDSGKISSFLTIQEGCDKFCHFCVVPYTRGPEY 175 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR L Q++DEA+ L DNG EI LLGQNVNA+ E+ S+L++ + +I + R+ Sbjct: 176 SRPLEQILDEAKYLADNGAQEIVLLGQNVNAY-----SYEQNKLSNLIFEIEKIPQIKRI 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP+DMSD LIK + LMP +HLPVQSGS++IL+ MNR+HT EY +I D+++ Sbjct: 231 RYTTSHPKDMSDDLIKVYKSSKKLMPLVHLPVQSGSNKILERMNRKHTISEYHKIFDKLK 290 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P+I SSDFI+G+PGE ++DF+AT +L++KI + +FSF +SPR GT ++ LE +D Sbjct: 291 DINPNIEFSSDFIIGYPGEEEEDFQATFELINKIKFINSFSFIFSPRPGTVAAD-LELID 349 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + + ERL +Q +L E Q++ N + + I VL+E +K ++ GRS ++ SV+ N K Sbjct: 350 KKISMERLEIIQNQLFENQINMNKSLENKTINVLVENLTDDKTQVFGRSEYMTSVIFNGK 409 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 +IG I+ VRI STL+GE++ Sbjct: 410 KEDIGKILPVRIIKSNRSTLFGEII 434 >gi|254797167|ref|YP_003082007.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neorickettsia risticii str. Illinois] gi|254590407|gb|ACT69769.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neorickettsia risticii str. Illinois] Length = 454 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 220/445 (49%), Positives = 297/445 (66%), Gaps = 18/445 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F +K+YGCQMNVYDS +E + G+ +DADLI+LNTC+IREKAAEK+YS L Sbjct: 12 KKFHIKTYGCQMNVYDSEMIEKIVGGLGFTLSEKAEDADLIILNTCNIREKAAEKLYSEL 71 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143 G+IR L+ K+ +L VVAGCVAQAEGEEI+RR+ V+VVVGPQ+ + LPEL+ + Sbjct: 72 GQIRLLQK---KKQERILTVVAGCVAQAEGEEIIRRAENVDVVVGPQSIHSLPELIAKVN 128 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRG 200 R ++ + ++ +KF+ L+ KR V +AFL+IQEGCDKFC FCVVPYTRG Sbjct: 129 RQSEKAIKIEFDPIEKFDYLA----EETNKRQVPQSSAFLSIQEGCDKFCAFCVVPYTRG 184 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKG 259 E SR + +V EA L GV EITLLGQNVN + G G+ L+ L +I Sbjct: 185 AEYSRPIEEVYREALSLTTKGVKEITLLGQNVNGYHGALNSGDNVFNLGQLISHLGKIPS 244 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+RYTTSHP DM L AH + LMP++HLPVQSGSD+ILK MNR++T +Y +II Sbjct: 245 LKRIRYTTSHPVDMHKELYDAHANESKLMPFVHLPVQSGSDKILKKMNRKYTTADYLKII 304 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + ++ R DIA SSDFIVGFPGE+DDDF+ T+ L++++ YAQ +SFKYSPR GTPG+ Sbjct: 305 HKFQNARSDIAFSSDFIVGFPGESDDDFQQTLALIEQVNYAQCYSFKYSPRPGTPGA-AY 363 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 Q+ E K RL LQ+ L+E+Q+ FN +G+ + VL +K K K+ GR+ ++Q V Sbjct: 364 PQIAEETKNTRLQKLQQLLKEKQLEFNKKMIGKTVTVLFDK--KHPDKISGRTEYMQQVF 421 Query: 440 LNSKNHNIGD-IIKVRITDVKISTL 463 S + N+ D I+ +R+ D TL Sbjct: 422 --SYDSNLLDKIVTMRVEDASTFTL 444 >gi|56416641|ref|YP_153715.1| hypothetical protein AM401 [Anaplasma marginale str. St. Maries] gi|81599177|sp|Q5PB69|MIAB_ANAMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|56387873|gb|AAV86460.1| hypothetical protein AM401 [Anaplasma marginale str. St. Maries] Length = 455 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/418 (50%), Positives = 284/418 (67%), Gaps = 13/418 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++SYGCQMNVYDSL +ED+ G+ V +DAD+I++NTCH+REKAAEK+YS LGR Sbjct: 5 LYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYSALGR 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R L+ KEG L+VVAGCVAQAEGE + R+P V+VVVGPQ+ + LPEL+ +A Sbjct: 65 MRMLR----KEGA--LIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMKATRD 118 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + ++ ++ KF+ ++ RGV+AF+++QEGCDKFCTFCVVPYTRG E SRS Sbjct: 119 AKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPEYSRS 175 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + V+ E RKL D G E+ LLGQNVNA+ G G + L+ ++E++G+ R+RYT Sbjct: 176 VEDVLAEVRKLADGGTKEVVLLGQNVNAYHGT-YKGNEWDLGRLIRKVAEVEGIERIRYT 234 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHPRDM L AH L+P +HLPVQSGSD +L+ MNR+H+ EY IID ++ R Sbjct: 235 TSHPRDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTLKEAR 294 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 DIA+SSDFIVGFPGET++DF ATMDLV +G+A ++SFKYSPR GTPG+ QV E Sbjct: 295 SDIALSSDFIVGFPGETEEDFEATMDLVRHVGFATSYSFKYSPRPGTPGAEYTNQVPEEE 354 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVVLN 441 K+ RL LQ L QQ F + +G+ + VL+ E ++ G+S +Q V ++ Sbjct: 355 KSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRSCSNEVFGKSEHMQPVYIS 412 >gi|254994852|ref|ZP_05277042.1| hypothetical protein AmarM_01756 [Anaplasma marginale str. Mississippi] Length = 463 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/418 (50%), Positives = 284/418 (67%), Gaps = 13/418 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++SYGCQMNVYDSL +ED+ G+ V +DAD+I++NTCH+REKAAEK+YS LGR Sbjct: 5 LYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYSALGR 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R L+ KEG L+VVAGCVAQAEGE + R+P V+VVVGPQ+ + LPEL+ +A Sbjct: 65 MRMLR----KEGA--LIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMKATRD 118 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + ++ ++ KF+ ++ RGV+AF+++QEGCDKFCTFCVVPYTRG E SRS Sbjct: 119 AKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPEYSRS 175 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + V+ E RKL D G E+ LLGQNVNA+ G G + L+ ++E++G+ R+RYT Sbjct: 176 VEDVLAEVRKLADGGTKEVVLLGQNVNAYHGT-YKGNEWDLGRLIRKVAEVEGIERIRYT 234 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHPRDM L AH L+P +HLPVQSGSD +L+ MNR+H+ EY IID ++ R Sbjct: 235 TSHPRDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTLKEAR 294 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 DIA+SSDFIVGFPGET++DF ATMDLV +G+A ++SFKYSPR GTPG+ QV E Sbjct: 295 SDIALSSDFIVGFPGETEEDFEATMDLVRHVGFATSYSFKYSPRPGTPGAEYTNQVPEEE 354 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVVLN 441 K+ RL LQ L QQ F + +G+ + VL+ E ++ G+S +Q V ++ Sbjct: 355 KSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRSCSNEVFGKSEHMQPVYIS 412 >gi|269958944|ref|YP_003328733.1| putative 2-methylthioadenine synthetase [Anaplasma centrale str. Israel] gi|269848775|gb|ACZ49419.1| putative 2-methylthioadenine synthetase [Anaplasma centrale str. Israel] Length = 463 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/418 (50%), Positives = 284/418 (67%), Gaps = 13/418 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++SYGCQMNVYDSL +ED+ G+ V +DAD+I++NTCH+REKAAEK+YS LGR Sbjct: 5 LYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYSALGR 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R L+ KEG L+VVAGCVAQAEGE + R+P V+VVVGPQ+ + LPEL+ +A Sbjct: 65 MRMLR----KEGA--LIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMKATRD 118 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + ++ ++ KF+ ++ RGV+AF+++QEGCDKFCTFCVVPYTRG E SRS Sbjct: 119 AKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPEYSRS 175 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + V+ E RKL D G E+ LLGQNVNA+ G G + L+ ++E+ G+ R+RYT Sbjct: 176 VEDVLAEVRKLADGGTKEVVLLGQNVNAYHGT-YKGNEWDLGRLIRKVAEVDGIERIRYT 234 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHPRDM L AH L+P +HLPVQSGSD +L+ MNR+H+ EY IID ++ R Sbjct: 235 TSHPRDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTLKEAR 294 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 DIA+SSDFIVGFPGET++DF ATMDLV +G+A ++SFKYSPR GTPG+ QV E Sbjct: 295 SDIALSSDFIVGFPGETEEDFEATMDLVRHVGFATSYSFKYSPRPGTPGAEYTNQVPEEE 354 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGRSPWLQSVVLN 441 K+ RL LQ L QQ F + +G+ + VL+ +G ++ G+S +Q V ++ Sbjct: 355 KSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRGCSNEVFGKSEHMQPVYIS 412 >gi|121606262|ref|YP_983591.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Polaromonas naphthalenivorans CJ2] gi|229890592|sp|A1VSP2|MIAB_POLNA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|120595231|gb|ABM38670.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polaromonas naphthalenivorans CJ2] Length = 447 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/451 (46%), Positives = 298/451 (66%), Gaps = 15/451 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +P++ F+K++GCQMN YDS +M D+ + +GYE ++D+ADLI+ NTC +REKA EKV+ Sbjct: 1 MPKKVFIKTFGCQMNEYDSDKMSDVLHAAEGYENTQNIDEADLILFNTCSVREKAQEKVF 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140 S LGR+++LK + L+ V GCVA EGE I++R+P V+VV GPQT +RLP+LL Sbjct: 61 SDLGRVKHLKAKGV------LIGVGGCVASQEGEAIIQRAPYVDVVFGPQTLHRLPQLLA 114 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 RAR GK VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG Sbjct: 115 SRARLGKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRG 169 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKG 259 E+SR V+ E L D GV E+TLLGQNVNA+RG G E F+ LL +SEI G Sbjct: 170 EEVSRPFEDVLVEVAGLADQGVKEVTLLGQNVNAYRGSMGGTAEIADFATLLEYVSEIPG 229 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+RY TSHP + + LI A+ L L+ +LHLPVQ GSDRIL +M R +TA EY+ I Sbjct: 230 IERIRYITSHPNEFTQRLIDAYATLPKLVNHLHLPVQHGSDRILMAMKRGYTAMEYKSTI 289 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R++RPD+A+SSDFIVGFPGET+DDF M LV+ +GY +FSF +SPR GTP +N+ Sbjct: 290 RKLRAIRPDLAMSSDFIVGFPGETEDDFEKLMKLVNDVGYDTSFSFIFSPRPGTPAANLA 349 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438 + VK +RL LQ L + + + + +G + +L+E K+ +L+GR+ + V Sbjct: 350 DDTPHEVKLKRLQHLQATLDDSVRAISASRLGTVQRILVEGTARKDASELMGRTECNRVV 409 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 +L + IG ++ VRIT+ +L GE++ Sbjct: 410 ILKGQPRLIGQMVDVRITEASQRSLRGEVLT 440 >gi|114778653|ref|ZP_01453469.1| 2-methylthioadenine synthetase [Mariprofundus ferrooxydans PV-1] gi|114551118|gb|EAU53679.1| 2-methylthioadenine synthetase [Mariprofundus ferrooxydans PV-1] Length = 452 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 212/445 (47%), Positives = 295/445 (66%), Gaps = 11/445 (2%) Query: 27 FFVKSYGCQMNVYDSLRMED-MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 F+++YGCQMN YDS RM D M + G V +DAD+I++NTC +REKA EKVYS LG Sbjct: 14 LFIRTYGCQMNEYDSGRMADIMKQAYGLRLVALPEDADVILMNTCSVREKAEEKVYSELG 73 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R R LK R D+++ V GCV Q EGE I +R+P V++V GPQTY+RLPE++++ R Sbjct: 74 RYRKLKLKR----PDMIIGVGGCVGQQEGERIQKRAPYVDLVFGPQTYHRLPEMVKQIRR 129 Query: 146 GK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + + +KF+ L G +GV +TI EGCDKFCTFCVVPYTRG E+S Sbjct: 130 ERVHLTQVEMPEIEKFDHLPKHQG-----QGVAGCVTIMEGCDKFCTFCVVPYTRGPELS 184 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ ++ E R+L+ +GV EI+LLGQNVN +RG G D E+ F+ LLY+++++ GL RLR Sbjct: 185 RPVADILSECRQLLADGVVEISLLGQNVNGYRGVGPDDEEWDFTMLLYAVAKLDGLKRLR 244 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP +M+ L +A ++ LMPYLHLPVQSGSD +LK+M+R H Y + I+ +R Sbjct: 245 FTTSHPMEMTSELCQAFAEIPQLMPYLHLPVQSGSDAMLKAMHRGHDRDTYLRQIEELRE 304 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PDIA+SSDFIVG+PGE+D DF T+DL ++GY A+ FKYSPR GTP ++ + V E Sbjct: 305 YCPDIALSSDFIVGYPGESDADFEDTLDLARRVGYDSAYCFKYSPRPGTPAAHAEDNVPE 364 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL L +REQ +G+ +EVL+EK G+ +G + GR+ + V Sbjct: 365 AVKDERLQRLLTLMREQSREAMQRQLGRTVEVLVEKAGRNEGDMEGRTADYRIVHFRGSA 424 Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469 IG ++ VRI + +L GEL++ Sbjct: 425 RQIGQVMPVRIVETYGQSLRGELIL 449 >gi|260582067|ref|ZP_05849862.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus influenzae NT127] gi|260094957|gb|EEW78850.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus influenzae NT127] Length = 474 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 210/447 (46%), Positives = 296/447 (66%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS +M D+ S G E + ++AD+++LNTC IREKA EKV+ Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K +L++ V GCVA EGE I R+P V+++ GPQT +RLPE++ + Sbjct: 63 LGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L D GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 174 VSRPVDDVLFEIAQLADQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + +D +I + D L+ +LHLPVQ+GSDR+L M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRAHTALEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+VRPDI ISSDFIVGFPGET +DF TM+L+ ++ + +FSF YS R GTP ++M + V Sbjct: 294 RAVRPDIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K +RL LQ+++ +Q F+ +G VL+E K+ +L GR+ + V Sbjct: 354 TEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GE+V Sbjct: 414 GSPEMIGKFVDVKITDVYTNSLRGEVV 440 >gi|222475005|ref|YP_002563420.1| 2-methylthioadenine synthetase (miaB) [Anaplasma marginale str. Florida] gi|222419141|gb|ACM49164.1| 2-methylthioadenine synthetase (miaB) [Anaplasma marginale str. Florida] Length = 454 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/418 (50%), Positives = 283/418 (67%), Gaps = 13/418 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++SYGCQMNVYDSL +ED+ G+ V +DAD+I++NTCH+REKAAEK+YS LGR Sbjct: 5 LYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYSALGR 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R L+ KEG L+VVAGCVAQAEGE + R+P V+VVVGPQ+ + LPEL+ +A Sbjct: 65 MRMLR----KEGA--LIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMKATRD 118 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + ++ ++ KF+ ++ RGV+AF+++QEGCDKFCTFCVVPYTRG E SRS Sbjct: 119 AKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPEYSRS 175 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + V+ E RKL D G E+ LLGQNVNA+ G G + L+ ++E+ G+ R+RYT Sbjct: 176 VEDVLAEVRKLADGGTKEVVLLGQNVNAYHGT-YKGNEWDLGRLIRKVAEVDGIERIRYT 234 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHP+DM L AH L+P +HLPVQSGSD +L+ MNR+H+ EY IID ++ R Sbjct: 235 TSHPKDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTLKEAR 294 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 DIA+SSDFIVGFPGET++DF ATMDLV +G+A ++SFKYSPR GTPG+ QV E Sbjct: 295 SDIALSSDFIVGFPGETEEDFEATMDLVRHVGFATSYSFKYSPRPGTPGAEYTNQVPEEE 354 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVVLN 441 K+ RL LQ L QQ F + +G+ + VL+ E ++ G+S +Q V ++ Sbjct: 355 KSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRSCSNEVFGKSEHMQPVYIS 412 >gi|255004110|ref|ZP_05278911.1| 2-methylthioadenine synthetase (miaB) [Anaplasma marginale str. Virginia] Length = 463 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/418 (50%), Positives = 283/418 (67%), Gaps = 13/418 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++SYGCQMNVYDSL +ED+ G+ V +DAD+I++NTCH+REKAAEK+YS LGR Sbjct: 5 LYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYSALGR 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R L+ KEG L+VVAGCVAQAEGE + R+P V+VVVGPQ+ + LPEL+ +A Sbjct: 65 MRMLR----KEGA--LIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMKATRD 118 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + ++ ++ KF+ ++ RGV+AF+++QEGCDKFCTFCVVPYTRG E SRS Sbjct: 119 AKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPEYSRS 175 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + V+ E RKL D G E+ LLGQNVNA+ G G + L+ ++E+ G+ R+RYT Sbjct: 176 VEDVLAEVRKLADGGTKEVVLLGQNVNAYHGT-YKGNEWDLGRLIRKVAEVDGIERIRYT 234 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHP+DM L AH L+P +HLPVQSGSD +L+ MNR+H+ EY IID ++ R Sbjct: 235 TSHPKDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTLKEAR 294 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 DIA+SSDFIVGFPGET++DF ATMDLV +G+A ++SFKYSPR GTPG+ QV E Sbjct: 295 SDIALSSDFIVGFPGETEEDFEATMDLVRHVGFATSYSFKYSPRPGTPGAEYTNQVPEEE 354 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVVLN 441 K+ RL LQ L QQ F + +G+ + VL+ E ++ G+S +Q V ++ Sbjct: 355 KSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRSCSNEVFGKSEHMQPVYIS 412 >gi|145635209|ref|ZP_01790913.1| uracil-DNA glycosylase [Haemophilus influenzae PittAA] gi|145267488|gb|EDK07488.1| uracil-DNA glycosylase [Haemophilus influenzae PittAA] Length = 474 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/447 (46%), Positives = 296/447 (66%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS +M D+ S G E + ++AD+++LNTC IREKA EKV+ Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K +L++ V GCVA EGE I R+P V+++ GPQT +RLPE++ + Sbjct: 63 LGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 174 VSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + +D +I + D L+ +LHLPVQ+GSDR+L M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRAHTALEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+VRPDI ISSDFIVGFPGET +DF TM+L+ ++ + +FSF YS R GTP ++M + V Sbjct: 294 RAVRPDIQISSDFIVGFPGETSEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K +RL LQ+++ +Q F+ +G VL+E K+ +L GR+ + V Sbjct: 354 TEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GE+V Sbjct: 414 GSPEMIGKFVDVKITDVYTNSLRGEVV 440 >gi|255002985|ref|ZP_05277949.1| 2-methylthioadenine synthetase (miaB) [Anaplasma marginale str. Puerto Rico] Length = 425 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 208/418 (49%), Positives = 283/418 (67%), Gaps = 13/418 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++SYGCQMNVYDSL +ED+ G+ V +DAD+I++NTCH+REKAAEK+YS LGR Sbjct: 5 LYIESYGCQMNVYDSLMVEDILRPLGFAAVQRPEDADIIMVNTCHVREKAAEKLYSALGR 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R L+ KEG L+VVAGCVAQAEGE + R+P V+VVVGPQ+ + LPEL+ +A Sbjct: 65 MRMLR----KEGA--LIVVAGCVAQAEGEAVFERAPFVDVVVGPQSIHTLPELIMKATRD 118 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + ++ ++ KF+ ++ RGV+AF+++QEGCDKFCTFCVVPYTRG E SRS Sbjct: 119 AKQMNVEFPAISKFD---VISTDLLVSRGVSAFVSVQEGCDKFCTFCVVPYTRGPEYSRS 175 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + V+ E RKL D G E+ LLGQNVNA+ G G + L+ ++E+ G+ R+RYT Sbjct: 176 VEDVLAEVRKLADGGTKEVVLLGQNVNAYHGT-YKGNEWDLGRLIRKVAEVDGIERIRYT 234 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHP+DM L AH L+P +HLPVQSGSD +L+ MNR+H+ EY IID ++ R Sbjct: 235 TSHPKDMHSSLYDAHKHEPKLLPCVHLPVQSGSDSVLRKMNRKHSVQEYMDIIDTLKEAR 294 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 DIA+SSDFIVGFPGET++DF ATM+LV +G+A ++SFKYSPR GTPG+ QV E Sbjct: 295 SDIALSSDFIVGFPGETEEDFEATMNLVRHVGFATSYSFKYSPRPGTPGAEYTNQVPEEE 354 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVVLN 441 K+ RL LQ L QQ F + +G+ + VL+ E ++ G+S +Q V ++ Sbjct: 355 KSSRLHRLQHLLLTQQRLFTKSMIGKTVSVLVCGTEGSRSCSNEVFGKSEHMQPVYIS 412 >gi|30250262|ref|NP_842332.1| Fe-S oxidoreductase family protein [Nitrosomonas europaea ATCC 19718] gi|75540036|sp|Q82SI7|MIAB_NITEU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|30181057|emb|CAD86247.1| Fe-S oxidoreductases family 1 [Nitrosomonas europaea ATCC 19718] Length = 443 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 211/447 (47%), Positives = 298/447 (66%), Gaps = 16/447 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++++GCQMN YDS +M D+ S+ G E + ++ADLI+ NTC +REKA EKV+ L Sbjct: 4 KLYIRTFGCQMNEYDSAKMADILLSEKGMELAETPEEADLILFNTCSVREKAQEKVFHDL 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143 GR+R+LKNS+ DLL+ V GCVA EG EI++R+P V++V GPQT +RLP+L++ R Sbjct: 64 GRVRHLKNSK----PDLLIGVGGCVASQEGPEIVKRAPFVDLVFGPQTLHRLPDLIDARR 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R G+ VD + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG E+ Sbjct: 120 RTGRPQVDISFPEIEKFDRLPPA-----RTEGSTAFVSIMEGCSKYCSFCVVPYTRGEEV 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR L V+ E L GV E+TLLGQNVNA+ GK ++GE F+ LL + EI G+ R+ Sbjct: 175 SRPLDDVLTEVAGLAIQGVKEVTLLGQNVNAYLGKMINGEIADFATLLDYIHEIPGIERI 234 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPR+ + LI+A+ L L+ ++HLPVQSGSDRIL +M R +T EY+ I+ ++R Sbjct: 235 RYTTSHPREFTARLIEAYQRLPKLVGHVHLPVQSGSDRILAAMKRGYTTVEYKSIVRKLR 294 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 VRPDI+ISSDFI+GFPGET+DDF ATM L+D + + ++FSF YSPR GTP +++ + Sbjct: 295 LVRPDISISSDFIIGFPGETEDDFEATMKLIDDVHFDESFSFIYSPRPGTPAADLPDNTS 354 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442 +K RL LQ+K++ + + V + +L+E K+ G+ GR+ + V+N Sbjct: 355 HQIKLTRLYRLQEKIQLNAQAISQGMVDTVQRILVEGPSRKDPGEFCGRTD--NNRVVNF 412 Query: 443 KNHN--IGDIIKVRITDVKISTLYGEL 467 H G I +RIT V TL GE+ Sbjct: 413 AGHAGLTGSFIDIRITAVSSHTLRGEI 439 >gi|16271994|ref|NP_438192.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus influenzae Rd KW20] gi|145629127|ref|ZP_01784926.1| lipoyl synthase [Haemophilus influenzae 22.1-21] gi|145630690|ref|ZP_01786469.1| lipoyl synthase [Haemophilus influenzae R3021] gi|145636777|ref|ZP_01792443.1| lipoyl synthase [Haemophilus influenzae PittHH] gi|145639692|ref|ZP_01795295.1| lipoyl synthase [Haemophilus influenzae PittII] gi|148827177|ref|YP_001291930.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus influenzae PittGG] gi|229845365|ref|ZP_04465496.1| hypothetical protein CGSHi6P18H1_00417 [Haemophilus influenzae 6P18H1] gi|260580677|ref|ZP_05848504.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus influenzae RdAW] gi|319896441|ref|YP_004134634.1| isopentenyl-adenosine a37 tRNA methylthiolase [Haemophilus influenzae F3031] gi|2501533|sp|Q57163|MIAB_HAEIN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890551|sp|A5UFJ1|MIAB_HAEIG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|1572963|gb|AAC21697.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|144978630|gb|EDJ88353.1| lipoyl synthase [Haemophilus influenzae 22.1-21] gi|144983816|gb|EDJ91266.1| lipoyl synthase [Haemophilus influenzae R3021] gi|145270075|gb|EDK10012.1| lipoyl synthase [Haemophilus influenzae PittHH] gi|145271249|gb|EDK11163.1| lipoyl synthase [Haemophilus influenzae PittII] gi|148718419|gb|ABQ99546.1| hypothetical protein CGSHiGG_02565 [Haemophilus influenzae PittGG] gi|229811673|gb|EEP47371.1| hypothetical protein CGSHi6P18H1_00417 [Haemophilus influenzae 6P18H1] gi|260092739|gb|EEW76675.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus influenzae RdAW] gi|301168620|emb|CBW28210.1| isopentenyl-adenosine A37 tRNA methylthiolase [Haemophilus influenzae 10810] gi|309750662|gb|ADO80646.1| 2-methylthioadenine synthetase (MiaB) [Haemophilus influenzae R2866] gi|317431943|emb|CBY80291.1| isopentenyl-adenosine A37 tRNA methylthiolase [Haemophilus influenzae F3031] Length = 474 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/447 (46%), Positives = 296/447 (66%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS +M D+ S G E + ++AD+++LNTC IREKA EKV+ Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K +L++ V GCVA EGE I R+P V+++ GPQT +RLPE++ + Sbjct: 63 LGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 174 VSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + +D +I + D L+ +LHLPVQ+GSDR+L M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRAHTALEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+VRPDI ISSDFIVGFPGET +DF TM+L+ ++ + +FSF YS R GTP ++M + V Sbjct: 294 RAVRPDIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K +RL LQ+++ +Q F+ +G VL+E K+ +L GR+ + V Sbjct: 354 TEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GE+V Sbjct: 414 GSPEMIGKFVDVKITDVYTNSLRGEVV 440 >gi|145633424|ref|ZP_01789154.1| lipoyl synthase [Haemophilus influenzae 3655] gi|319774971|ref|YP_004137459.1| isopentenyl-adenosine A37 tRNA methylthiolase [Haemophilus influenzae F3047] gi|329123127|ref|ZP_08251697.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus aegyptius ATCC 11116] gi|144985987|gb|EDJ92589.1| lipoyl synthase [Haemophilus influenzae 3655] gi|317449562|emb|CBY85767.1| isopentenyl-adenosine A37 tRNA methylthiolase [Haemophilus influenzae F3047] gi|327471682|gb|EGF17124.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus aegyptius ATCC 11116] Length = 474 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/447 (46%), Positives = 296/447 (66%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS +M D+ S G E + ++AD+++LNTC IREKA EKV+ Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K +L++ V GCVA EGE I R+P V+++ GPQT +RLPE++ + Sbjct: 63 LGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 174 VSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + +D +I + D L+ +LHLPVQ+GSDR+L M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRGHTALEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+VRPDI ISSDFIVGFPGET +DF TM+L+ ++ + +FSF YS R GTP ++M + V Sbjct: 294 RAVRPDIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K +RL LQ+++ +Q F+ +G VL+E K+ +L GR+ + V Sbjct: 354 TEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GE+V Sbjct: 414 GSPEMIGKFVDVKITDVYTNSLRGEVV 440 >gi|309972847|gb|ADO96048.1| 2-methylthioadenine synthetase (MiaB) [Haemophilus influenzae R2846] Length = 474 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/447 (46%), Positives = 296/447 (66%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS +M D+ S G E + ++AD+++LNTC IREKA EKV+ Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K +L++ V GCVA EGE I R+P V+++ GPQT +RLPE++ + Sbjct: 63 LGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L D GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 174 VSRPVDDVLFEIAQLADQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + ++ +I + D L+ +LHLPVQ+GSDR+L M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPIEFTNDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRGHTALEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+VRPDI ISSDFIVGFPGET +DF TM+L+ ++ + +FSF YS R GTP ++M + V Sbjct: 294 RAVRPDIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K +RL LQ+++ +Q F+ +G VL+E K+ +L GR+ + V Sbjct: 354 TEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GE+V Sbjct: 414 GSPEMIGKFVDVKITDVYTNSLRGEVV 440 >gi|251793083|ref|YP_003007809.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Aggregatibacter aphrophilus NJ8700] gi|247534476|gb|ACS97722.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aggregatibacter aphrophilus NJ8700] Length = 474 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 211/447 (47%), Positives = 296/447 (66%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS +M D+ S G E + ++AD+++LNTC IREKA EKV+ Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLHSTHGLELTDVPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK S K LL+ V GCVA EGE I R+P V++V GPQT +RLPE++ + Sbjct: 63 LGRWKELKKSNPK----LLIGVGGCVASQEGEHIRTRAPYVDIVFGPQTLHRLPEMINQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG E Sbjct: 119 RGGKSSVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + ++ E +L + GV E+ LLGQNVNA+RG DGE CTF++LL ++ I G+ R Sbjct: 174 VSRPVDDILFEIAQLAEQGVREVNLLGQNVNAYRGPTFDGEICTFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRGHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++VRP+I ISSDFIVGFPGET++DF TM+L+ ++ + +FSF YS R GTP ++ + V Sbjct: 294 KAVRPNIQISSDFIVGFPGETEEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADYPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K +RL LQ+++ Q F+ A +G VL+E K+ +L GR+ + V Sbjct: 354 TEDEKKQRLYLLQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQ 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + ++ITDV ++L GE+V Sbjct: 414 GSPDMIGKFVDIKITDVFTNSLRGEVV 440 >gi|68248570|ref|YP_247682.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus influenzae 86-028NP] gi|148825700|ref|YP_001290453.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus influenzae PittEE] gi|229846938|ref|ZP_04467044.1| lipoyl synthase [Haemophilus influenzae 7P49H1] gi|81337003|sp|Q4QPM5|MIAB_HAEI8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890550|sp|A5UBB9|MIAB_HAEIE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|68056769|gb|AAX87022.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP] gi|148715860|gb|ABQ98070.1| lipoyl synthase [Haemophilus influenzae PittEE] gi|229810022|gb|EEP45742.1| lipoyl synthase [Haemophilus influenzae 7P49H1] Length = 474 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 208/447 (46%), Positives = 296/447 (66%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS +M D+ S G E + ++AD+++LNTC IREKA EKV+ Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K +L++ V GCVA EGE I R+P V+++ GPQT +RLPE++ + Sbjct: 63 LGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 174 VSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + ++ +I + D L+ +LHLPVQ+GSDR+L M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPIEFTNDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRGHTALEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+VRPDI ISSDFIVGFPGET +DF TM+L+ ++ + +FSF YS R GTP ++M + V Sbjct: 294 RAVRPDIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K +RL LQ+++ +Q F+ +G VL+E K+ +L GR+ + V Sbjct: 354 TEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GE+V Sbjct: 414 GSPEMIGKFVDVKITDVYTNSLRGEVV 440 >gi|257465566|ref|ZP_05629937.1| hypothetical protein AM202_03575 [Actinobacillus minor 202] gi|257451226|gb|EEV25269.1| hypothetical protein AM202_03575 [Actinobacillus minor 202] Length = 475 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 207/446 (46%), Positives = 297/446 (66%), Gaps = 12/446 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + ++GCQMN YDS +M D+ S G E ++ +DAD+++LNTC IREKA EKV+S L Sbjct: 3 KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDNPEDADVLLLNTCSIREKAQEKVFSQL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR +N K K+ DL++ V GCVA EGE I R+P V++V GPQT +RLPE++ + R Sbjct: 63 GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINQIR 118 Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK VVD + +KF+RL R G TAF++I EGC+K+C+FCVVPYTRG E+ Sbjct: 119 GGKSSVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + V+ E +L GV E+ LLGQNVNA+RG+ DG+ C+F++LL ++ I G+ R+ Sbjct: 174 SRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGQICSFAELLRLVAAIDGIDRV 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP + +D +I+ + D L+ +LHLP+QSGSDR+L M R HTA EY+ II ++R Sbjct: 234 RYTTSHPIEFTDDIIEVYKDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLR 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 RPDI ISSDFIVGFPGET +DF TM +++++ + +FSF YS R GTP +++ + V Sbjct: 294 EARPDIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDVT 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442 E+ K ERL LQ+++ Q + F+ A +G +L+E K+ +L GR+ + V Sbjct: 354 EDEKKERLYRLQQRINNQAMQFSRAMLGTEQRILVEGPSKKDIMELTGRTENNRIVNFQG 413 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L G++V Sbjct: 414 TPDMIGKFVDVKITDVYTNSLRGDVV 439 >gi|308050552|ref|YP_003914118.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ferrimonas balearica DSM 9799] gi|307632742|gb|ADN77044.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ferrimonas balearica DSM 9799] Length = 476 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 211/447 (47%), Positives = 295/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSAKMADLLDAFGGYTLTEEAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK ++ L++ V GCVA EG+ I R+P V++V GPQT +RLPE++ + Sbjct: 63 LGRWRPLK----EQNPALVIGVGGCVASQEGDAIRERAPYVDIVFGPQTLHRLPEMIGKI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G++ VVD + +KF+RL R G TAF++I EGC+K+C+FCVVPYTRG E Sbjct: 119 QAGEKGVVDVSFPEIEKFDRLP-----EPRAEGATAFVSIMEGCNKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L + GV EI LLGQNVNA+RG+ DGE C FSDLL ++ I G+ R Sbjct: 174 VSRPLDDVLYEIAQLAEQGVREINLLGQNVNAYRGETHDGEICRFSDLLRYVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LRYTTSHP + + +I A+ D+ L+ +LHLPVQSGSDRIL M R HTA E++ II R+ Sbjct: 234 LRYTTSHPVEFTQDIIDAYADVPELVDFLHLPVQSGSDRILTMMKRNHTALEFKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R VRP+I ISSDFIVGFP ETD+DF TM L+ I + Q+FSF YSPR GTP ++M++ V Sbjct: 294 RKVRPNIHISSDFIVGFPNETDEDFEDTMKLIADIEFDQSFSFIYSPRPGTPAADMVDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441 E K +RL LQ ++ +Q + F+ +G + +L+E K+ +L GR+ + V + Sbjct: 354 SEETKKQRLYILQDRINQQAMQFSRRMLGTVQRILVEGVSKKNAMELRGRTENNRVVNFD 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V IT+V +L G L+ Sbjct: 414 GDVELIGGFVDVEITEVLPHSLRGTLI 440 >gi|58697143|ref|ZP_00372571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Wolbachia endosymbiont of Drosophila simulans] gi|58536553|gb|EAL59910.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Wolbachia endosymbiont of Drosophila simulans] Length = 384 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 202/388 (52%), Positives = 275/388 (70%), Gaps = 13/388 (3%) Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 YS LG+I +L+ ++ +VVAGCVAQAEGEE+ RR+P V++VVGPQ+ LPEL+ Sbjct: 3 YSELGKIHSLRK-------EMTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIATLPELI 55 Query: 141 ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 +A K V++TD+ KF++L D Y +G +AFL IQEGCDKFCTFCVVPYTR Sbjct: 56 VKASRSKGHVINTDFPEVAKFDKLP--DECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTR 113 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR ++++ EA KL+ NG EI LLGQNVNA+ G+ +GE L+ +++I+ Sbjct: 114 GAEYSRPVNEIFREALKLVANGANEINLLGQNVNAYHGE-CEGEVWDLGKLISHIAKIEK 172 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+RYTTSHPRDM + L AH + LMP++HLPVQSGS++IL +MNR+HTA EY +II Sbjct: 173 LERIRYTTSHPRDMHESLYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEII 232 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 DR R ++P+I SSDFIVGFPGET+ DF TM LV+K+ YAQA+SFKYSPR GTPG+ Sbjct: 233 DRFRKLKPEIEFSSDFIVGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAERK 292 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSV 438 +QV E VK ERLL LQK + +QQ+ FN + VG+ I VL +K GK + +++G+SP++QSV Sbjct: 293 DQVPEEVKTERLLRLQKLISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQSV 352 Query: 439 VLNSKNHNIGD-IIKVRITDVKISTLYG 465 ++ D I+ V++ + + S+L G Sbjct: 353 CIDDSEDKYRDKIVNVKVLEARQSSLLG 380 >gi|33151471|ref|NP_872824.1| hypothetical protein HD0226 [Haemophilus ducreyi 35000HP] gi|81423890|sp|Q7VP74|MIAB_HAEDU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|33147691|gb|AAP95213.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 475 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 205/446 (45%), Positives = 298/446 (66%), Gaps = 12/446 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + ++GCQMN YDS +M D+ S G E + ++AD+++LNTC IREKA EKV+S L Sbjct: 3 KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDKPEEADILLLNTCSIREKAQEKVFSQL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR +N K K+ DL++ V GCVA EGE I R+P V++V GPQT +RLPE++ + R Sbjct: 63 GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINQIR 118 Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G R VVD + +KF+RL + G TAF++I EGC+K+C+FCVVPYTRG E+ Sbjct: 119 SGDRAVVDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + V+ E +L + GV E+ LLGQNVNA+RG+ DG CTF++LL ++ I G+ RL Sbjct: 174 SRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRL 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP + +D +I+ + D L+ +LHLP+QSG+DR+L M R HTA EY+ II ++R Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLR 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +VRP+I ISSDFIVGFPGET +DF TM +++++ + +FSF YS R GTP S++ + V Sbjct: 294 AVRPNIQISSDFIVGFPGETAEDFEQTMKIIEQVNFDMSFSFIYSARPGTPASDLPDDVS 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442 EN K +RL LQ+++ Q + F+ +G +L+E K+ +L GR+ + V Sbjct: 354 ENEKKDRLAHLQQRINHQAMQFSRLMLGTEQRILVEGPSKKDIMELTGRTETNRVVNFIG 413 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 + IG + ++ITDV ++L GE++ Sbjct: 414 TPNMIGKFVDIKITDVYSNSLRGEVI 439 >gi|240948129|ref|ZP_04752539.1| hypothetical protein AM305_05003 [Actinobacillus minor NM305] gi|240297609|gb|EER48101.1| hypothetical protein AM305_05003 [Actinobacillus minor NM305] Length = 475 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 206/446 (46%), Positives = 297/446 (66%), Gaps = 12/446 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + ++GCQMN YDS +M D+ S G E ++ ++AD+++LNTC IREKA EKV+S L Sbjct: 3 KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDNPEEADVLLLNTCSIREKAQEKVFSQL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR +N K K+ DL++ V GCVA EGE I R+P V++V GPQT +RLPE++ + R Sbjct: 63 GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINQIR 118 Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK VVD + +KF+RL R G TAF++I EGC+K+C+FCVVPYTRG E+ Sbjct: 119 GGKSSVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + V+ E +L GV E+ LLGQNVNA+RG+ DG+ C+F++LL ++ I G+ R+ Sbjct: 174 SRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGQICSFAELLRLVAAIDGIDRV 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP + +D +I+ + D L+ +LHLP+QSGSDR+L M R HTA EY+ II ++R Sbjct: 234 RYTTSHPIEFTDDIIEVYKDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLR 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 RPDI ISSDFIVGFPGET +DF TM +++++ + +FSF YS R GTP +++ + V Sbjct: 294 EARPDIQISSDFIVGFPGETAEDFEQTMKIIEQVNFDMSFSFIYSARPGTPAADLPDDVT 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442 E+ K ERL LQ+++ Q + F+ A +G +L+E K+ +L GR+ + V Sbjct: 354 EDEKKERLYRLQQRINNQAMQFSRAMLGTEQRILVEGPSKKDIMELTGRTENNRIVNFQG 413 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L G++V Sbjct: 414 TPDMIGKFVDVKITDVYTNSLRGDVV 439 >gi|113461298|ref|YP_719367.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus somnus 129PT] gi|170717832|ref|YP_001784892.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus somnus 2336] gi|123132137|sp|Q0I3Z1|MIAB_HAES1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890552|sp|B0UUU9|MIAB_HAES2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|112823341|gb|ABI25430.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Haemophilus somnus 129PT] gi|168825961|gb|ACA31332.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Haemophilus somnus 2336] Length = 474 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 208/447 (46%), Positives = 294/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS +M D+ + G E + ++AD+++LNTC IREKA EKV+ Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLLNTHGLELTDVPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K+ L++ V GCVA EGE I R+P V++V GPQT +RLPE++ + Sbjct: 63 LGRWKELK----KQNPSLVIGVGGCVASQEGEHIRSRAPYVDIVFGPQTLHRLPEMINQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VVD + +KF+RL R G TAF++I EGC+K+C+FCVVPYTRG E Sbjct: 119 RGGKSAVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R Sbjct: 174 VSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGGICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + +D +I + D L+ +LHLPVQSGSDR+L M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPIEFTDDIIDVYADTPELVSFLHLPVQSGSDRVLNLMKRNHTALEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + VRP+I ISSDFIVGFPGETD DF TM+L+ ++ + +FSF YS R GTP ++M + V Sbjct: 294 KKVRPNIQISSDFIVGFPGETDQDFEDTMNLIAQVNFDMSFSFIYSARPGTPAADMPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ Q F+ A +G VL+E K+ +L GR+ + V Sbjct: 354 TEEEKKQRLYLLQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDIMELTGRTETNRIVNFA 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + IG + ++ITDV ++L GE+V Sbjct: 414 GTPNMIGKFVDIKITDVYTNSLRGEVV 440 >gi|261492918|ref|ZP_05989464.1| 2-methylthioadenine synthase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311459|gb|EEY12616.1| 2-methylthioadenine synthase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 475 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/446 (45%), Positives = 298/446 (66%), Gaps = 12/446 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + ++GCQMN YDS +M D+ S G+E + +DAD+++LNTC IREKA EKV+S L Sbjct: 3 KLHITTWGCQMNEYDSSKMADLLNSTHGFELTENPEDADVLLLNTCSIREKAQEKVFSQL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR +N K K+ +L++ V GCVA EGE I R+P V++V GPQT +RLPE++ + R Sbjct: 63 GRWKNWK----KDKPNLIIGVGGCVASQEGEHIRDRAPYVDIVFGPQTLHRLPEMINQIR 118 Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK +VD + +KF+RL + G TAF++I EGC+K+C+FCVVPYTRG E+ Sbjct: 119 GGKSSIVDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + V+ E +L GV E+ LLGQNVNA+RG+ DG CTF++LL ++ I G+ RL Sbjct: 174 SRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRL 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP + +D +I+ + D L+ +LHLP+QSGSDR+L M R HTA EY+ II ++R Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLR 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +VRP+I ISSDFIVGFPGET +DF TM +++++ + +FSF YS R GTP +++ + V Sbjct: 294 AVRPEIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDNVS 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442 ++ K ERL LQ+++ Q + F+ A +G +L+E K+ +L GR+ + V Sbjct: 354 DDEKKERLSRLQQRINHQAMQFSRAMLGTEQRILVEGPSKKDLMELTGRTETNRVVNFVG 413 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GE++ Sbjct: 414 TPDMIGKFVDVKITDVYTNSLRGEVI 439 >gi|254362260|ref|ZP_04978374.1| 2-methylthioadenine synthase [Mannheimia haemolytica PHL213] gi|261496732|ref|ZP_05993107.1| 2-methylthioadenine synthase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093835|gb|EDN74770.1| 2-methylthioadenine synthase [Mannheimia haemolytica PHL213] gi|261307571|gb|EEY08899.1| 2-methylthioadenine synthase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 475 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/446 (45%), Positives = 298/446 (66%), Gaps = 12/446 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + ++GCQMN YDS +M D+ S G+E + +DAD+++LNTC IREKA EKV+S L Sbjct: 3 KLHITTWGCQMNEYDSSKMADLLNSTHGFELTENPEDADVLLLNTCSIREKAQEKVFSQL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR +N K K+ +L++ V GCVA EGE I R+P V++V GPQT +RLPE++ + R Sbjct: 63 GRWKNWK----KDKPNLIIGVGGCVASQEGEHIRDRAPYVDIVFGPQTLHRLPEMINQIR 118 Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK +VD + +KF+RL + G TAF++I EGC+K+C+FCVVPYTRG E+ Sbjct: 119 GGKSSIVDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + V+ E +L GV E+ LLGQNVNA+RG+ DG CTF++LL ++ I G+ RL Sbjct: 174 SRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRL 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP + +D +I+ + D L+ +LHLP+QSGSDR+L M R HTA EY+ II ++R Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLR 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +VRP+I ISSDFIVGFPGET +DF TM +++++ + +FSF YS R GTP +++ + V Sbjct: 294 AVRPEIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDNVS 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442 ++ K ERL LQ+++ Q + F+ A +G +L+E K+ +L GR+ + V Sbjct: 354 DDEKKERLSRLQQRINHQAMQFSRAMLGTEQRILVEGPSKKDLMELTGRTETNRVVNFVG 413 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GE++ Sbjct: 414 TPDMIGKFVDVKITDVYTNSLRGEVI 439 >gi|322513853|ref|ZP_08066934.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinobacillus ureae ATCC 25976] gi|322120315|gb|EFX92257.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinobacillus ureae ATCC 25976] Length = 475 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 204/446 (45%), Positives = 296/446 (66%), Gaps = 12/446 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + ++GCQMN YDS +M D+ S G E N ++AD+++LNTC IREKA EKV+S L Sbjct: 3 KLHITTWGCQMNEYDSSKMADLLNSTHGLELTNKPEEADVLLLNTCSIREKAQEKVFSQL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR +N K K+ +L++ V GCVA EGE I R+P V++V GPQT +RLPE++ + R Sbjct: 63 GRWKNWK----KDKPELIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINKIR 118 Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G R +VD + +KF+RL R G TAF++I EGC+K+C+FCVVPYTRG E+ Sbjct: 119 GGDRAIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + V+ E +L + GV E+ LLGQNVNA+RG+ DG CTF++LL ++ I G+ R+ Sbjct: 174 SRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRV 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP + +D +I+ + D L+ +LHLP+QSG+DR+L M R HTA EY+ II ++R Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLR 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 VRP+I ISSDFIVGFPGET +DF TM +++++ + +FSF YS R GTP +++ + + Sbjct: 294 EVRPNIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDIS 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442 E K ERL LQ+++ Q + F+ A +G VL+E K+ +L GR+ + V Sbjct: 354 EEEKKERLARLQQRINHQAMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQG 413 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG + ++ITDV ++L G++V Sbjct: 414 IPDMIGKFVDIKITDVYTNSLRGDVV 439 >gi|32034173|ref|ZP_00134395.1| COG0621: 2-methylthioadenine synthetase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208789|ref|YP_001054014.1| hypothetical protein APL_1325 [Actinobacillus pleuropneumoniae L20] gi|190150645|ref|YP_001969170.1| hypothetical protein APP7_1376 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263992|ref|ZP_07545593.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|229890417|sp|A3N1X3|MIAB_ACTP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890418|sp|B3GYA4|MIAB_ACTP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|126097581|gb|ABN74409.1| hypothetical protein APL_1325 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915776|gb|ACE62028.1| hypothetical protein APP7_1376 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870681|gb|EFN02424.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 475 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 204/446 (45%), Positives = 296/446 (66%), Gaps = 12/446 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + ++GCQMN YDS +M D+ S G E + ++AD+++LNTC IREKA EKV+S L Sbjct: 3 KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDKPEEADVLLLNTCSIREKAQEKVFSQL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR +N K K+ DL++ V GCVA EGE I R+P V++V GPQT +RLPE++ + R Sbjct: 63 GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRDRAPFVDIVFGPQTLHRLPEMINKIR 118 Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G R +VD + +KF+RL R G TAF++I EGC+K+C+FCVVPYTRG E+ Sbjct: 119 GGDRAIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + V+ E +L + GV E+ LLGQNVNA+RG+ DG CTF++LL ++ I G+ R+ Sbjct: 174 SRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRV 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP + +D +I+ + D L+ +LHLP+QSG+DR+L M R HTA EY+ II ++R Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLR 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 VRP+I ISSDFIVGFPGET +DF TM +++++ + +FSF YS R GTP +++ + + Sbjct: 294 EVRPNIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDIS 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442 E K ERL LQ+++ Q + F+ A +G VL+E K+ +L GR+ + V Sbjct: 354 EEEKKERLARLQQRINHQAMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQG 413 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG + ++ITDV ++L G++V Sbjct: 414 TPDMIGKFVDIKITDVYTNSLRGDVV 439 >gi|152979606|ref|YP_001345235.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Actinobacillus succinogenes 130Z] gi|229890491|sp|A6VQQ3|MIAB_ACTSZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|150841329|gb|ABR75300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Actinobacillus succinogenes 130Z] Length = 474 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/447 (46%), Positives = 290/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS ++ D+ S G E + AD+++LNTC IREKA EKV+S Sbjct: 3 QKLHIKTWGCQMNEYDSAKIADLLLSTHGLELTEEAEQADVLLLNTCSIREKAQEKVFSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + KN E L++ V GCVA EGE I R+P V+++ GPQT +RLPE++ + Sbjct: 63 LGRWKTWKN----EKPGLIIGVGGCVASQEGEHIRERAPFVDIIFGPQTLHRLPEMINQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VVD + +KF+ L + G TAF++I EGC+K+CT+CVVPYTRG E Sbjct: 119 RGGKSSVVDVSFPEIEKFDCLP-----EPKAEGPTAFVSIMEGCNKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L D GV EI LLGQNVNA+RG DG CTF++LL ++ I G+ R Sbjct: 174 VSRPLDDVLFEVAQLADQGVREINLLGQNVNAYRGPTHDGGICTFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + +D +I + D L+ +LHLPVQSG+DRIL M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPIEFTDDIIDVYADTPELVSFLHLPVQSGADRILTMMKRGHTALEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R VRPDI ISSDFIVGFPGET+++F TM+L+ + + +FSF YS R GTP ++M + V Sbjct: 294 RKVRPDIQISSDFIVGFPGETNEEFEQTMNLIADVNFDMSFSFVYSARPGTPAADMPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ Q F+ A +G VL+E K+ +L GR+ + V Sbjct: 354 SEEEKKQRLYLLQQRINNQAAKFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFK 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + ++ITDV ++L G+++ Sbjct: 414 GTPDMIGKFVDIQITDVFTNSLRGDVI 440 >gi|254516558|ref|ZP_05128617.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium NOR5-3] gi|219674981|gb|EED31348.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium NOR5-3] Length = 446 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/448 (46%), Positives = 297/448 (66%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ FVK++GCQMN YDS R++D+ S G E + +DAD+I+LNTC IREKA EKV+ Sbjct: 3 KKVFVKTHGCQMNEYDSARIQDLLVDSHGLEPTDREEDADVILLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK ++ +L++ V GCVA EG EI +R+P V++V GPQT +RLPE+LE Sbjct: 63 LGRWRPLK----QKNPNLIIGVGGCVASQEGAEIGKRAPFVDLVFGPQTLHRLPEMLEER 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G VVD + +KF+RL G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 RDTGNLVVDISFPEIEKFDRLP-----EPSVEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E L GV E+ LLGQNVNA+RG +G+ F++LL+ ++ I G+ R Sbjct: 174 VSRPLDDVIAEVAGLAARGVREVNLLGQNVNAYRGDNHEGDVVDFAELLHFVAAIPGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + S+ LI+A+ ++ L+ +LHLPVQ+GSDRIL +M R HT EY+ I ++ Sbjct: 234 IRYTTSHPVEFSEALIQAYAEIPELVDHLHLPVQAGSDRILAAMKRGHTVLEYKSKIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R++RP+I++SSDFI+GFPGET+ DF ATM L+D IG+ +FSF YS R GTP +++ + Sbjct: 294 RTIRPNISMSSDFIIGFPGETEADFAATMKLIDDIGFDASFSFIYSARPGTPAADLKDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 DE+ K RL LQ ++ +Q + + VG +LI K+ G+L GR+ + V + Sbjct: 354 DEDTKKSRLHILQARINQQAQAISRNMVGTRQRILITGPSRKDPGQLQGRTENNRVVNFS 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 + +H IG + V I + ++L GEL+ Sbjct: 414 ATDHGLIGQFVDVTIGEALPNSLRGELI 441 >gi|315634739|ref|ZP_07890023.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aggregatibacter segnis ATCC 33393] gi|315476687|gb|EFU67435.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aggregatibacter segnis ATCC 33393] Length = 474 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/447 (46%), Positives = 293/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS +M D+ S G E ++AD+++LNTC IREKA EKV+ Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLHSTHGLELTEVPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K +LL+ V GCVA EGE I R+P V++V GPQT +RLPE++ + Sbjct: 63 LGRWKELK----KNNPNLLIGVGGCVASQEGEHIRTRAPYVDIVFGPQTLHRLPEMINQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VVD + +KF+ L R G TAF++I EGC+K+CT+CVVPYTRG E Sbjct: 119 RGGKSSVVDISFPEIEKFDCLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + ++ E +L GV E+ LLGQNVNA+RG DGE CTF++LL ++ I G+ R Sbjct: 174 VSRPVDDILFEIAQLAAQGVREVNLLGQNVNAYRGPTFDGEICTFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + +D +I + D L+ +LHLPVQSGSDR+L M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLTMMKRGHTALEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++VRP+I ISSDFIVGFPGET++DF TM+L+ ++ + +FSF YS R GTP ++ + V Sbjct: 294 KAVRPNIQISSDFIVGFPGETNEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADYPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K +RL LQ+++ Q F+ A +G VL+E K+ +L GR+ + V Sbjct: 354 TEDEKKQRLYLLQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + ++ITDV ++L GE+V Sbjct: 414 GSPEMIGKFVDIKITDVFTNSLRGEVV 440 >gi|307248353|ref|ZP_07530376.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250579|ref|ZP_07532521.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252960|ref|ZP_07534848.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307261809|ref|ZP_07543475.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|229890699|sp|B0BQR0|MIAB_ACTPJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|306855091|gb|EFM87271.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857395|gb|EFM89509.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859598|gb|EFM91623.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306868627|gb|EFN00438.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 475 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 204/446 (45%), Positives = 295/446 (66%), Gaps = 12/446 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + ++GCQMN YDS +M D+ S G E + ++AD+++LNTC IREKA EKV+S L Sbjct: 3 KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDKPEEADVLLLNTCSIREKAQEKVFSQL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR +N K K+ DL++ V GCVA EGE I R+P V++V GPQT +RLPE++ + R Sbjct: 63 GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRDRAPFVDIVFGPQTLHRLPEMINKIR 118 Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G R +VD + +KF+RL R G TAF++I EGC+K+C+FCVVPYTRG E+ Sbjct: 119 GGDRAIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + V+ E +L + GV E+ LLGQNVNA+RG+ DG CTF++LL ++ I G+ R+ Sbjct: 174 SRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRV 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP + +D +I+ + D L+ +LHLP+QSG+DR+L M R HTA EY+ II ++R Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLR 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 VRP+I ISSDFIVGFPGET +DF TM +++++ + +FSF YS R GTP +++ + + Sbjct: 294 EVRPNIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDIS 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442 E K RL LQ+++ Q + F+ A +G VL+E K+ +L GR+ + V Sbjct: 354 EEEKKARLARLQQRINHQAMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQG 413 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG + ++ITDV ++L GE+V Sbjct: 414 TPDMIGKFVDIKITDVYTNSLRGEVV 439 >gi|325578752|ref|ZP_08148799.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus parainfluenzae ATCC 33392] gi|325159576|gb|EGC71708.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Haemophilus parainfluenzae ATCC 33392] Length = 474 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 207/447 (46%), Positives = 295/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS +M D+ + G E + ++AD+++LNTC IREKA EKV+ Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLLNTHGLELTDIPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K+ +L++ V GCVA EGE I R+P V++V GPQT +RLPE++ + Sbjct: 63 LGRWKELK----KQNPNLVIGVGGCVASQEGEHIRHRAPYVDIVFGPQTLHRLPEMINQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG E Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L D GV EI LLGQNVNA+RG DG CTF++LL ++ I G+ R Sbjct: 174 VSRPVDDVLFEIAQLADQGVREINLLGQNVNAYRGPTFDGGICTFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + +D +I + D L+ ++HLPVQ+GSDRIL M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVDFVHLPVQAGSDRILTMMKRGHTALEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+VRP+I ISSDFIVGFPGET ++F TM+L+ ++ + +FSF YS R GTP ++M + V Sbjct: 294 RAVRPNIQISSDFIVGFPGETKEEFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q ++ +G VL+E K+ +L GR+ + V Sbjct: 354 SEEEKKQRLYLLQERINQQAAQYSRRMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQ 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + ++ITDV ++L GE+V Sbjct: 414 GSPDMIGKFVDIKITDVYTNSLRGEVV 440 >gi|229890691|sp|Q0ABN9|MIAB_ALHEH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 448 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 209/446 (46%), Positives = 297/446 (66%), Gaps = 13/446 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 R +VK++GCQMN YDS +M D+ + GY RV+S DAD+I+LNTC +REKA EKV+S L Sbjct: 4 RVYVKTHGCQMNEYDSDKMADVLVKERGYTRVDSPGDADVILLNTCSVREKAQEKVFSEL 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR ++ K + G ++ V GCVA EGE I++R+P V+VV GPQT +RLPE+++RAR Sbjct: 64 GRWKDYKT---RNGA--VIGVGGCVASQEGEAIVQRAPHVDVVFGPQTLHRLPEMIDRAR 118 Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G R VVD + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG EI Sbjct: 119 DGGRSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEEI 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR V+ E L + GV E+TLLGQNVNA+RG DG C + L++ ++ + G+ R+ Sbjct: 174 SRPFEDVIAEVASLAEQGVREVTLLGQNVNAYRGPMADGTVCDLALLIHYVAALDGIGRI 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP + SD LI+A+ + L +LHLPVQSGSD +LK M R HTA EY I+RI+ Sbjct: 234 RFTTSHPVEFSDSLIEAYREEPKLAGHLHLPVQSGSDLVLKLMKRGHTAAEYLDKIERIK 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + RP I+I+SDFIVG+PGE++ DF T+ L++ +G+ Q+FSF YSPR GTP +++ + Sbjct: 294 AARPGISIASDFIVGYPGESEADFEDTLRLIEAVGFDQSFSFLYSPRPGTPAASLSDSTP 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442 VK ERL LQ+ + +++ VG + VL++ + K+ ++ GR+ + V Sbjct: 354 AEVKRERLYRLQETINANARRISESMVGTVQRVLVDGRSRKDPNEISGRTENNRVVNFAG 413 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG ++VRIT+ K ++L GEL+ Sbjct: 414 HPRLIGHFVEVRITEAKPNSLRGELL 439 >gi|294338754|emb|CAZ87086.1| MiaB protein (Methylthiolation of isopentenylated A37 derivatives in tRNA) [Thiomonas sp. 3As] Length = 453 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 212/454 (46%), Positives = 297/454 (65%), Gaps = 15/454 (3%) Query: 17 IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREK 75 + D IV ++ F+K++GCQMN YDS +M D+ ++GYE V + +ADLI+LNTC IREK Sbjct: 1 MTDASIVTKKVFIKTFGCQMNEYDSAKMADVLGAAEGYEPVATPQEADLILLNTCSIREK 60 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A EKV+S LGR+R LK + +LL+ V GCVA EGE I++R+P V++V GPQT +R Sbjct: 61 AQEKVFSDLGRLRELKADK----PNLLIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHR 116 Query: 136 LPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 LP+L+ +R G+ VD + +KF+ L R G +AF++I EGC K+C++CV Sbjct: 117 LPQLIAQRQALGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCV 171 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 VPYTRG E+SR L V+ E +L GV E+TLLGQNVNAW G G +GE F LL + Sbjct: 172 VPYTRGEEVSRPLVDVLTEVAELASLGVREVTLLGQNVNAWLGSG-EGEDFAF--LLECV 228 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 +EI G+ R+RYTTSHP++ + LI A+G + L+ ++HLPVQ GSDRIL +M R ++A E Sbjct: 229 AEIDGIERIRYTTSHPKEFTQRLIDAYGRIPKLVNHVHLPVQHGSDRILAAMKRGYSALE 288 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 ++ I+ R+R+VRPDI I SDFIVGFPGETD DF M L++ + + +FSF +SPR GTP Sbjct: 289 FKSIVRRLRAVRPDICIGSDFIVGFPGETDADFTQLMKLIEDMQFDASFSFIFSPRPGTP 348 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP 433 +N+ + +VK +RL LQ ++ Q + + A V VLIE K+ +L GR+ Sbjct: 349 AANLADDTPADVKLKRLQTLQAQIEAQASAISAAMVDTEQAVLIEGPSKKDPSELQGRTE 408 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 + V L + IG I+ VRIT +L GE+ Sbjct: 409 NNRIVHLKANARLIGQIVPVRITTAYPHSLRGEV 442 >gi|114319555|ref|YP_741238.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkalilimnicola ehrlichii MLHE-1] gi|114225949|gb|ABI55748.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkalilimnicola ehrlichii MLHE-1] Length = 508 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 211/448 (47%), Positives = 300/448 (66%), Gaps = 17/448 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 R +VK++GCQMN YDS +M D+ + GY RV+S DAD+I+LNTC +REKA EKV+S L Sbjct: 64 RVYVKTHGCQMNEYDSDKMADVLVKERGYTRVDSPGDADVILLNTCSVREKAQEKVFSEL 123 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR ++ K + G ++ V GCVA EGE I++R+P V+VV GPQT +RLPE+++RAR Sbjct: 124 GRWKDYKT---RNGA--VIGVGGCVASQEGEAIVQRAPHVDVVFGPQTLHRLPEMIDRAR 178 Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G R VVD + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG EI Sbjct: 179 DGGRSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEEI 233 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR V+ E L + GV E+TLLGQNVNA+RG DG C + L++ ++ + G+ R+ Sbjct: 234 SRPFEDVIAEVASLAEQGVREVTLLGQNVNAYRGPMADGTVCDLALLIHYVAALDGIGRI 293 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP + SD LI+A+ + L +LHLPVQSGSD +LK M R HTA EY I+RI+ Sbjct: 294 RFTTSHPVEFSDSLIEAYREEPKLAGHLHLPVQSGSDLVLKLMKRGHTAAEYLDKIERIK 353 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + RP I+I+SDFIVG+PGE++ DF T+ L++ +G+ Q+FSF YSPR GTP +++ + Sbjct: 354 AARPGISIASDFIVGYPGESEADFEDTLRLIEAVGFDQSFSFLYSPRPGTPAASLSDSTP 413 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442 VK ERL LQ+ + +++ VG + VL++ + K+ ++ GR+ + V+N Sbjct: 414 AEVKRERLYRLQETINANARRISESMVGTVQRVLVDGRSRKDPNEISGRTE--NNRVVNF 471 Query: 443 KNHN--IGDIIKVRITDVKISTLYGELV 468 H IG ++VRIT+ K ++L GEL+ Sbjct: 472 AGHPRLIGHFVEVRITEAKPNSLRGELL 499 >gi|293390538|ref|ZP_06634872.1| lipoyl synthase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951072|gb|EFE01191.1| lipoyl synthase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 474 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 205/447 (45%), Positives = 292/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS +M D+ S G E ++AD+++LNTC IREKA EKV+ Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLHSTHGLELTEVPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K +LL+ V GCVA EGE I R+P V+++ GPQT +RLPE++ + Sbjct: 63 LGRWKELK----KSNPNLLIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMINQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG E Sbjct: 119 RGGKSAVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + ++ E +L + GV E+ LLGQNVNA+RG DG+ CTF++LL ++ I G+ R Sbjct: 174 VSRPVDDILFEIAQLAEQGVREVNLLGQNVNAYRGPTFDGDICTFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + +D +I + D L+ +LHLPVQSGSD +L M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDHVLNMMKRGHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++VRP I +SSDFIVGFPGET++DF TM+L+ ++ + +FSF YS R GTP ++ + V Sbjct: 294 KAVRPHIQVSSDFIVGFPGETNEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADYPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ Q F+ A +G VL+E K+ +L GR+ + V Sbjct: 354 SEEEKKQRLYLLQQRINNQAAQFSRAMLGSEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + ++ITDV ++L GE+V Sbjct: 414 GTPDMIGKFVDIKITDVFTNSLRGEVV 440 >gi|261868524|ref|YP_003256446.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413856|gb|ACX83227.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 474 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 205/447 (45%), Positives = 292/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS +M D+ S G E ++AD+++LNTC IREKA EKV+ Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLHSTHGLELTEVPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K +LL+ V GCVA EGE I R+P V+++ GPQT +RLPE++ + Sbjct: 63 LGRWKELK----KSNPNLLIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMINQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG E Sbjct: 119 RGGKSAVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + ++ E +L + GV E+ LLGQNVNA+RG DG+ CTF++LL ++ I G+ R Sbjct: 174 VSRPVDDILFEIAQLAEQGVREVNLLGQNVNAYRGPTFDGDICTFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + +D +I + D L+ +LHLPVQSGSD +L M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDHVLNMMKRGHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++VRP I +SSDFIVGFPGET++DF TM+L+ ++ + +FSF YS R GTP ++ + V Sbjct: 294 KAVRPHIQVSSDFIVGFPGETNEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADYPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ Q F+ A +G VL+E K+ +L GR+ + V Sbjct: 354 SEEEKKQRLYLLQQRINNQAAQFSRAMLGSEQRVLVEGPSKKDIMELTGRTETNRIVNFQ 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + ++ITDV ++L GE+V Sbjct: 414 GTPDMIGKFVDIKITDVFTNSLRGEVV 440 >gi|319940867|ref|ZP_08015206.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Sutterella wadsworthensis 3_1_45B] gi|319805749|gb|EFW02530.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Sutterella wadsworthensis 3_1_45B] Length = 442 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 211/447 (47%), Positives = 292/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++S+GCQMN YDS R+ D+ + E+ +++AD++VLNTC IREKA EKV+S Sbjct: 4 KKLYLRSFGCQMNDYDSNRIVDLLGEAMQLEKTEDLNEADVVVLNTCSIREKAQEKVFSD 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGRIR K R D+++ V GCVA EG I++R+P V+VV GPQT +RLPE+L ER Sbjct: 64 LGRIREAKRDR----PDMMIAVGGCVASQEGAGIVKRAPWVDVVFGPQTMHRLPEMLGER 119 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 AR GK VD + +KF+ L R G AF++I EGC K+CT+CVVPYTRG E Sbjct: 120 ARTGKPQVDVSFPEIEKFDHLPA-----PRAEGAAAFVSIMEGCSKYCTYCVVPYTRGEE 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR L V+ E +L D GV E+TLLGQNVNA+RG +G+ F+ LL +SEI G+ R Sbjct: 175 ISRPLVDVLVEVAQLADQGVKEVTLLGQNVNAYRGVTPEGDTADFAMLLEYVSEIDGIER 234 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHPR+ + LI A+ L L+ ++HLPVQ+GSDRIL +M R ++ EY+ II R+ Sbjct: 235 IRYTTSHPREFTQRLIDAYTKLPKLVSHVHLPVQAGSDRILTAMKRGYSVLEYKSIIRRL 294 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++ RP IAI++DFIVGFPGET +DF TM L+D +G+ +FSF YSPR GTP + + ++ Sbjct: 295 KAARPGIAIATDFIVGFPGETAEDFEKTMRLIDDVGFDASFSFVYSPRPGTPAARLPDET 354 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441 +VK ERL LQ+K+ + + +G+I VL+ + +G L R+ + V Sbjct: 355 PYSVKLERLQRLQRKIDDNAAEISRNMLGKIERVLVVGPARRGEGMLSARTDNNRIVNFA 414 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 I + VRIT+V TL GELV Sbjct: 415 GDPSLINQMTNVRITEVFPHTLGGELV 441 >gi|307246244|ref|ZP_07528325.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255228|ref|ZP_07537043.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257391|ref|ZP_07539161.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259662|ref|ZP_07541386.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852853|gb|EFM85077.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861777|gb|EFM93756.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864241|gb|EFM96154.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866307|gb|EFM98171.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 475 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 203/446 (45%), Positives = 295/446 (66%), Gaps = 12/446 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + ++GCQMN YDS +M D+ S G E + ++AD+++LNTC IREKA EKV+S L Sbjct: 3 KLHITTWGCQMNEYDSSKMADLLNSTHGLELTDKPEEADVLLLNTCSIREKAQEKVFSQL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR +N K K+ DL++ V GCVA EGE I R+P V++V GPQT +RLPE++ + R Sbjct: 63 GRWKNWK----KDKPDLIIGVGGCVASQEGEHIRDRAPFVDIVFGPQTLHRLPEMINKIR 118 Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G R +VD + +KF+RL R G TAF++I EGC+K+C+FCVVPYTRG E+ Sbjct: 119 GGDRAIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEV 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + V+ E +L + GV E+ LLGQNVNA+RG+ DG CTF++LL ++ I G+ R+ Sbjct: 174 SRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRV 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP + +D +I+ + D L+ +LHLP+QSG+DR+L M R HTA EY+ II ++R Sbjct: 234 RYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLR 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 VRP+I ISSDFIVGFPGET +DF TM +++++ + +FSF YS R GTP +++ + + Sbjct: 294 EVRPNIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDIS 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442 E K RL LQ+++ Q + F+ A +G VL+E K+ +L GR+ + V Sbjct: 354 EEEKKARLARLQQRINHQAMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQG 413 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG + ++ITDV ++L G++V Sbjct: 414 TPDMIGKFVDIKITDVYTNSLRGDVV 439 >gi|71909139|ref|YP_286726.1| hypothetical protein Daro_3527 [Dechloromonas aromatica RCB] gi|123774245|sp|Q47A75|MIAB_DECAR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|71848760|gb|AAZ48256.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dechloromonas aromatica RCB] Length = 445 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 205/452 (45%), Positives = 299/452 (66%), Gaps = 15/452 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +P++ F++++GCQMN YDS +M D+ S+G + ++ ++AD+I+ NTC +REKA EKV+ Sbjct: 1 MPKKLFIRTFGCQMNEYDSDKMADVLNASEGVIKTDNPEEADIILFNTCSVREKAQEKVF 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140 LGR+R+LK K +L++ V GCVA EG+ I+ R+P V+VV GPQT +RLP+L+ Sbjct: 61 HDLGRVRHLK----KLNPNLVIGVGGCVASQEGDAIIARAPYVDVVFGPQTLHRLPQLIA 116 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 ER GK VD + +KF+ + + +G +AF++I EGC KFCTFC+VPYTRG Sbjct: 117 ERKAKGKAAVDVSFPEIEKFDAMP-----PSEIKGASAFVSIMEGCSKFCTFCIVPYTRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258 E+SR + V+ E L +GV E+TLLGQNVNA+RG ++G EK + L+ ++E+ Sbjct: 172 GEVSRPFNDVLTEVADLAAHGVGEVTLLGQNVNAYRGD-MEGTEEKADLALLIEYIAEVP 230 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R+RYTTSHPR+M+ L + + L+ +LHLPVQ+GSDR+L +M R +T EY+ I Sbjct: 231 GIERIRYTTSHPREMTQSLFDTYVKVPKLVSHLHLPVQAGSDRVLAAMKRGYTTLEYKSI 290 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I ++R+ RPDI++SSDFIVGFPGETD+DF TM L+D +G+ +FSF YSPR GTP + Sbjct: 291 IRKLRAARPDISLSSDFIVGFPGETDEDFEKTMKLIDDVGFDSSFSFIYSPRPGTPALEL 350 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQS 437 + +VK+ RLL LQK++ EQ + + VG I VL+E K+ +L GR+ + Sbjct: 351 DDSTPADVKSARLLRLQKRIDEQAQAISQTMVGSIQRVLVEGTSKKDVHELAGRTDNNRI 410 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 V + I + VRIT TL GE+V+ Sbjct: 411 VNFSGNPRLINTFVDVRITSSLSHTLRGEIVI 442 >gi|183598131|ref|ZP_02959624.1| hypothetical protein PROSTU_01496 [Providencia stuartii ATCC 25827] gi|188020290|gb|EDU58330.1| hypothetical protein PROSTU_01496 [Providencia stuartii ATCC 25827] Length = 476 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 202/448 (45%), Positives = 297/448 (66%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M + S GY+ ++ADL++LNTC IREKA EKV+ Sbjct: 5 KKLYIKTWGCQMNEYDSSKMASLLESTHGYQITEIPEEADLLLLNTCSIREKAQEKVFHQ 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR ++ K+S D+++ V GCVA EG+ I +R+P V++V GPQT +RLPE++ + Sbjct: 65 LGRWKSFKDS----NPDIIIGVGGCVASQEGDFIRQRAPSVDIVFGPQTLHRLPEMINQV 120 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R V+D + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG Sbjct: 121 K-GSRSPVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNA+RG DGE CTF++L+ ++ I G+ Sbjct: 175 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGATFDGEICTFAELIRLVAAIDGID 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 235 RIRFTTSHPIEFTDDIIEVYEDTPELVSFLHLPVQSGSDRILTLMKRAHTALEYKAIIRK 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPDI ISSDFIVGFPGET+DDF TM L+ + + +FSF YSPR GTP +++ + Sbjct: 295 LRKARPDILISSDFIVGFPGETNDDFEKTMKLIADVNFDMSFSFIYSPRPGTPAADLPDD 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E+ K +RL LQ+++ +Q +S++ A +G + +L+E ++ +L GR+ + V Sbjct: 355 VSEDEKKQRLYLLQQRINQQAMSYSRAMLGTVQRILVEGPSRKNVMELSGRTESNRVVNF 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G+++ Sbjct: 415 EGSPDMIGKFVDVEIVDVYANSLRGKVI 442 >gi|109898523|ref|YP_661778.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudoalteromonas atlantica T6c] gi|122971932|sp|Q15TR4|MIAB_PSEA6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|109700804|gb|ABG40724.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudoalteromonas atlantica T6c] Length = 477 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 295/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ S GY+ ++ ++AD+I+LNTC IREKA EKV+ Sbjct: 3 KKLFIKTWGCQMNEYDSQKMADLLDSTHGYQVADTAEEADIILLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR +NLK + +L++ V GCVA EG+ I +R+P V++V GPQT +RLPE++ + Sbjct: 63 LGRWKNLKQDK----PELIIGVGGCVASQEGQVIRQRAPFVDLVFGPQTLHRLPEMINQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G V+D + +KF+RL + G TAF++I EGC K+CTFCVVPYTRG E Sbjct: 119 KGGSSSVIDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DG CTF++LL ++ I G+ R Sbjct: 174 VSRPVDDVLLEVAQLAEQGVREVNLLGQNVNAFRGPHHDGAICTFAELLEMVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + +D +I A+ + L+ +LHLPVQSGSDR+L M R HTA EY+ I ++ Sbjct: 234 IRYTTSHPVEFTDDIIDAYATIPELVDHLHLPVQSGSDRVLNLMKRGHTAIEYKSKIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RP++++SSDFI+GFPGETDDDF ATMDL+ + + +FSF YS R GTP +++ + V Sbjct: 294 RKIRPNLSMSSDFIIGFPGETDDDFEATMDLIQAMDFDLSFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441 E K ERL LQ ++ +Q + + VL+E K+ +L GR+ + V Sbjct: 354 SETTKKERLQLLQNRITQQALRIARNMIDSEQRVLVEGPSKKNPMELSGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L G+++ Sbjct: 414 GTPDMIGGFVDVKITDVFANSLRGDVL 440 >gi|332140833|ref|YP_004426571.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|229890437|sp|B4S0R8|MIAB_ALTMD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|327550855|gb|AEA97573.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 477 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 204/447 (45%), Positives = 292/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ S G+ S ++AD+I+LNTC IREKA EKV+ Sbjct: 3 KKLYIKTWGCQMNEYDSEKMADLLDSTHGFSAAQSAEEADVILLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK + +L++ V GCVA EG+ I +R+P V++V GPQT +RLPE++ Sbjct: 63 LGRWKTLKQDK----PELIIGVGGCVASQEGDTIRQRAPFVDLVFGPQTLHRLPEMINEL 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G K V+D + +KF+RL R G TAF++I EGC K+CTFCVVPYTRG E Sbjct: 119 KGGAKSVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L GV E+ LLGQNVNA+RG+ DG C FS+LL ++ I G+ R Sbjct: 174 VSRPVDDVLLEIAQLAGQGVREVNLLGQNVNAYRGENYDGTICRFSELLELVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + +D +I A+ + L+ +LHLPVQSGSDRIL M R HTA EY+ + ++ Sbjct: 234 IRYTTSHPVEFTDDIIDAYASIPELVDHLHLPVQSGSDRILNLMKRGHTALEYKSKMRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + +RP+I++SSDFI+GFPGETD DF ATMDL+ + Y +FSF YS R GTP ++ ++ V Sbjct: 294 KKIRPNISLSSDFIIGFPGETDADFEATMDLIQAVDYDLSFSFIYSARPGTPAADAVDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + VG +L+E K+ +L GR+ + V Sbjct: 354 TEETKKQRLHLLQQRITQQALRIARHMVGTEQRILVEGPSKKNPMELSGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG+ + V ITDV ++L GE+V Sbjct: 414 GTPDMIGEFVDVNITDVFTNSLRGEVV 440 >gi|198282884|ref|YP_002219205.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665819|ref|YP_002425085.1| tRNA-i(6)A37 modification enzyme MiaB [Acidithiobacillus ferrooxidans ATCC 23270] gi|229890414|sp|B7J5B2|MIAB_ACIF2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890415|sp|B5ENG4|MIAB_ACIF5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|198247405|gb|ACH82998.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518032|gb|ACK78618.1| tRNA-i(6)A37 modification enzyme MiaB [Acidithiobacillus ferrooxidans ATCC 23270] Length = 451 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 216/445 (48%), Positives = 289/445 (64%), Gaps = 13/445 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMED-MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q ++K+YGCQMN YDS RM D + S G V+ AD+++LNTC IREKA +KV++ Sbjct: 2 QNLYIKTYGCQMNEYDSERMADTLAVSHGLRLVDDPVLADVLLLNTCSIREKAEDKVFTQ 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG R K R ++++ V GCVA EGE + RR+P V++V GPQT +RLP+LL+ Sbjct: 62 LGFWRPFKERR----PEVVIGVGGCVASQEGERLRRRAPYVDLVFGPQTLHRLPDLLDAC 117 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +R VD + + +KF+ L G + G TAF+TIQEGCDKFCTFCVVP+TRG E Sbjct: 118 LAERRPQVDIAFPMLEKFDHLPQRPG----RDGATAFVTIQEGCDKFCTFCVVPHTRGRE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 SRS+ ++ E R L++ GV EITLLGQNVNA+RG GL GE +DLL L+ I GL+ Sbjct: 174 YSRSMPDILREVRALVEQGVREITLLGQNVNAYRGATGLVGEG-GLADLLERLARIPGLL 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLRYTTSHP ++ D LI AHG + +L P+LHLPVQSGSDRIL+ M+R+HT +Y +DR Sbjct: 233 RLRYTTSHPANLDDELIAAHGSIGILAPHLHLPVQSGSDRILRRMHRKHTVGQYLDKVDR 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RP I ISSDFIVGFPGETD DF ATM+L+D + + Q+FSFKYS R TP + + Sbjct: 293 LRAARPGIQISSDFIVGFPGETDADFAATMELIDAVRFDQSFSFKYSQRPNTPALKLKDS 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V E VK +RL LQ ++ + A VG VLI + + L G++ ++V L Sbjct: 353 VPEAVKEDRLAVLQGRINGLAQGYAQALVGTQQAVLITGPSRRDAQELTGKTACNRAVNL 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465 +G ++ V IT ++L G Sbjct: 413 AGSMDWVGQMLDVEITAALPNSLRG 437 >gi|15602866|ref|NP_245938.1| hypothetical protein PM1001 [Pasteurella multocida subsp. multocida str. Pm70] gi|18203221|sp|Q9L699|MIAB_PASMU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|7716541|gb|AAF68426.1|AF237940_1 conserved hypothetical protein [Pasteurella multocida] gi|12721330|gb|AAK03085.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 474 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 208/447 (46%), Positives = 291/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS +M D+ S G E ++AD+++LNTC IREKA EKV+ Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLNSTHGLELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K L++ V GCVA EGE I R+P V+++ GPQT +RLPE++ + Sbjct: 63 LGRWKELK----KHKPGLVIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMINQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VVD + +KF+RL R G TAF++I EGC+K+C+FCVVPYTRG E Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG D CTF++LL ++ I G+ R Sbjct: 174 VSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDDGICTFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + +D +I + D L+ +LHLPVQSGSDR+L M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLSMMKRNHTALEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+VRP+I ISSDFIVGFPGET +DF TM+L+ ++ + +FSF YS R GTP ++M + V Sbjct: 294 RAVRPEIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ Q F+ A +G VL+E K+ +L GR+ + V Sbjct: 354 TEEEKKQRLYVLQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDLMELTGRTETNRIVNFV 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + ++ITDV ++L GE+V Sbjct: 414 GTPDMIGKFVDIKITDVFTNSLRGEVV 440 >gi|325981206|ref|YP_004293608.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Nitrosomonas sp. AL212] gi|325530725|gb|ADZ25446.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Nitrosomonas sp. AL212] Length = 442 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 207/446 (46%), Positives = 293/446 (65%), Gaps = 12/446 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++K++GCQMN YDS +M D+ + G E N +AD+I+ NTC +REKA EKV+ L Sbjct: 4 KLYIKTFGCQMNEYDSEKMADVLHAAYGMESTNDPAEADMILFNTCSVREKAQEKVFHDL 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143 GR+R+LK + DLL+ V GCVA EG+ I+ R+P V++V GPQT +RLP+L+E R Sbjct: 64 GRVRHLK----ERNPDLLIGVGGCVASQEGKAIVSRAPFVDIVFGPQTLHRLPQLIETRK 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+ VD + +KF+ L R GVTAF++I EGC K+C+FCVVPYTRG E+ Sbjct: 120 ATGRSQVDISFPEIEKFDHLPPA-----RTEGVTAFVSIMEGCSKYCSFCVVPYTRGEEV 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR L V+ E L G+ EITLLGQNVNA+ G DGE F+ LL L +I G+ R+ Sbjct: 175 SRPLDDVLTEIAVLAAQGIKEITLLGQNVNAYLGMMNDGEIADFALLLEYLHDIPGIERI 234 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP++ + LI+A+ L L+ +LHLPVQSGSDR+L +M R ++ EY+ II ++R Sbjct: 235 RYTTSHPKEFTTRLIQAYNQLPKLVNHLHLPVQSGSDRVLAAMKRGYSVLEYKSIIRKVR 294 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +VRPDI++SSDFIVGFPGET+ DF+AT++LV+++ + ++SF YSPR GTP +++ + + Sbjct: 295 AVRPDISLSSDFIVGFPGETEVDFQATLNLVEEMNFDDSYSFVYSPRPGTPAADLPDALP 354 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442 + K ERL LQ +L Q + VG + VL+E K+ +L GR+ + V L Sbjct: 355 QEEKLERLHRLQAQLSSQSRKISLQMVGTVQRVLLEGTSKKNLDELSGRTDNNRVVNLAG 414 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 G + VRIT+ + +L GELV Sbjct: 415 NPELTGRFVNVRITEARAHSLRGELV 440 >gi|300113051|ref|YP_003759626.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus watsonii C-113] gi|299538988|gb|ADJ27305.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus watsonii C-113] Length = 447 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 204/444 (45%), Positives = 294/444 (66%), Gaps = 12/444 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS RM D+ S G E + + A++++LNTC +REKA EKV+S Sbjct: 3 KKLYIKTHGCQMNEYDSSRMADVLRESHGLELTSDPEQAEVLLLNTCSVREKAQEKVFSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK SR +L++ V GCVA EGE I R+P V++V GPQT +RLP +L +A Sbjct: 63 LGRWRQLKQSR----PELIIGVGGCVASQEGETIRVRAPYVDLVFGPQTIHRLPAMLAQA 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VVD + +KF++L R G TAF+++ EGC K+C+FCVVPYTRG E Sbjct: 119 RTRSQPVVDLSFPEIEKFDKLP-----EPRAEGPTAFVSVMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR L VV E L + GV EITLLGQNVNA+RG +G+ + L+ ++ I+G+ R Sbjct: 174 ISRPLDDVVAEIVGLAEQGVREITLLGQNVNAYRGAMGEGDVADLALLINYVASIEGIER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + SD LI+A ++ L +LHLPVQSGSDR+L M R HT EY+ + ++ Sbjct: 234 IRFTTSHPVEFSDSLIQAFAEVPELASHLHLPVQSGSDRMLGLMKRGHTVLEYKAKLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R VRPDI+ISSDFIVG PGET+ DF+AT+ LVD++G+ +FSF YSPR GTP +++ + Sbjct: 294 RQVRPDISISSDFIVGLPGETEADFQATLALVDEVGFDHSFSFVYSPRPGTPAASLPDHT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 VK ERL LQ++LR +++ + VG + +VL+E+ K+ L GR+ + V + Sbjct: 354 PIAVKKERLAILQERLRALEIAISQGMVGTVQQVLVERPSKKDPTMLAGRTANNRVVNFS 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465 + +G + ++IT+ ++L G Sbjct: 414 APQVMVGQFVNIKITEALPNSLRG 437 >gi|260914514|ref|ZP_05920983.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pasteurella dagmatis ATCC 43325] gi|260631615|gb|EEX49797.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pasteurella dagmatis ATCC 43325] Length = 474 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 207/447 (46%), Positives = 293/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS +M D+ S G E + ++AD+++LNTC IREKA EKV+ Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLNSTHGLELTDIPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K L++ V GCVA EGE I R+P V+++ GPQT +RLPE++ + Sbjct: 63 LGRWKELK----KHKPGLVIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMINQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VVD + +KF+RL R G TAF++I EGC+K+C+FCVVPYTRG E Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG D CTF++LL ++ I G+ R Sbjct: 174 VSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDDGICTFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + +D +I + D L+ +LHLPVQSGSDR+L M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLSMMKRNHTALEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+VRP+I ISSDFIVGFPGET +DF TM+L+ ++ + +FSF YS R GTP ++M + V Sbjct: 294 RAVRPEIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K +RL LQ+++ Q F+ A +G VL+E K+ +L GR+ + V Sbjct: 354 SEDEKKQRLYVLQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDLMELTGRTETNRIVNFV 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + ++ITDV ++L G++V Sbjct: 414 GTPDMIGKFVDIKITDVFTNSLRGDVV 440 >gi|262274718|ref|ZP_06052529.1| tRNA-i(6)A37 methylthiotransferase [Grimontia hollisae CIP 101886] gi|262221281|gb|EEY72595.1| tRNA-i(6)A37 methylthiotransferase [Grimontia hollisae CIP 101886] Length = 474 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 207/447 (46%), Positives = 294/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + G YE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNATGGYELTEDPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR +NLK+ + L++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKNLKDQK----PGLVIGVGGCVATQEGDHIRERAPYVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D + +KF+RL R G TAF++I EGC K+CTFCVVPYTRG E Sbjct: 119 QQDDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L + GV E+ LLGQNVNA+RG+ DGE C+F++LL ++ I G+ R Sbjct: 174 VSRPLDDVLYEIAQLAEQGVREVNLLGQNVNAYRGEMHDGEICSFAELLRYVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + +D +I+ + D ++ +LHLPVQSGSDRIL M R HTA EY+ I ++ Sbjct: 234 IRYTTSHPIEFTDDIIEVYKDTPEVVSFLHLPVQSGSDRILTMMKRPHTAIEYKSKIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RP IAISSDFIVGFPGETD DF ATM L+ + + +FSF YSPR GTP ++M + Sbjct: 294 REARPGIAISSDFIVGFPGETDADFEATMKLIRDVNFDMSFSFIYSPRPGTPAADMPDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E VK ERL LQ+++ Q + ++ +G +L+E K+ +L GR+ + V Sbjct: 354 PEQVKKERLYELQQQINAQAMIYSRQMLGTEQRILVEGPSKKNLMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+IT+V ++L GELV Sbjct: 414 GAVDLIGQFVDVKITEVLPNSLRGELV 440 >gi|89902134|ref|YP_524605.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodoferax ferrireducens T118] gi|123091133|sp|Q21T29|MIAB_RHOFD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|89346871|gb|ABD71074.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodoferax ferrireducens T118] Length = 452 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 206/454 (45%), Positives = 293/454 (64%), Gaps = 20/454 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K+YGCQMN YDS +M D+ +QGYE +++++ADLI+ NTC +REKA EKV+S Sbjct: 3 KKVFIKTYGCQMNEYDSDKMSDVLGAAQGYEPTDNVEEADLILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR+++LK K+G L+ V GCVA EG I+ R+P V+VV GPQT +RLP+LL ER Sbjct: 63 LGRVKHLK----KKGA--LIGVGGCVASQEGAAIIERAPYVDVVFGPQTLHRLPQLLAER 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 117 ERLNRSQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK------GLDGEKCTFSDLLYSLSE 256 +SR V+ E L D GV EITLLGQNVNAWR + L E F+ LL +S+ Sbjct: 172 VSRPFEDVLVEVAGLADQGVKEITLLGQNVNAWRSRMIGAASALSSEMADFATLLEYVSD 231 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I G+ R+RY TSHP + + LI A+ L L+ +LHLPVQ GSDRIL +M R +TA EY+ Sbjct: 232 IPGIERIRYVTSHPNEFTPSLIAAYDKLPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYK 291 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 + ++R++RPD+A+SSDFIVGFPGET+DDF M L+D +G+ +FSF +SPR GTP + Sbjct: 292 STVRKLRAIRPDMALSSDFIVGFPGETEDDFSKMMKLIDDVGFDNSFSFIFSPRPGTPAA 351 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWL 435 N+ + VK RL LQ + + +++ +G + +L+E K + +L+GR+ Sbjct: 352 NLHDDTPHEVKLRRLQHLQTVINDSIKRISESRLGTVQRILVEGASKRDSTELMGRTECN 411 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + V + IG ++ V IT+ + TL GE+V Sbjct: 412 RVVNFCGQPRLIGQMVDVAITETRSFTLRGEVVT 445 >gi|167856488|ref|ZP_02479203.1| hypothetical protein HPS_09340 [Haemophilus parasuis 29755] gi|167852383|gb|EDS23682.1| hypothetical protein HPS_09340 [Haemophilus parasuis 29755] Length = 463 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 205/436 (47%), Positives = 289/436 (66%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ S G E + +DAD+++LNTC IREKA EKV+S LGR +N K Sbjct: 1 MNEYDSSKMADLLNSTHGLELTENPEDADILLLNTCSIREKAQEKVFSQLGRWKNWK--- 57 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153 K+ DL++ V GCVA EGE I R+P V++V GPQT +RLPE++ + R GK VVD Sbjct: 58 -KDKPDLIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINQIRGGKSSVVDIS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+RL R G TAF++I EGC+K+C+FCVVPYTRG E+SR + V+ E Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L + GV E+ LLGQNVNA+RG+ DG C+F++LL ++ I G+ R+RYTTSHP + Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGETFDGGICSFAELLRLVASIDGIDRVRYTTSHPIEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D +I+ + D L+ +LHLP+QSGSDR+L M R HTA EY+ II ++R RPDI ISS Sbjct: 232 TDDIIEVYKDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLREARPDIQISS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFIVGFPGET DF TM +++++ + +FSF YS R GTP +++ + V E+ K ERL Sbjct: 292 DFIVGFPGETAQDFEQTMKIIEQVNFDMSFSFIYSARPGTPAADLPDDVTEDEKKERLYR 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ+++ Q + F+ A +G +L+E K+ +L GR+ + V + IG + Sbjct: 352 LQQRINNQAMQFSRAMLGTEQRILVEGPSKKDIMELTGRTESNRIVNFQGTPNMIGKFVD 411 Query: 453 VRITDVKISTLYGELV 468 V+ITDV ++L GE+V Sbjct: 412 VKITDVYTNSLRGEVV 427 >gi|114331766|ref|YP_747988.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosomonas eutropha C91] gi|122313484|sp|Q0AF59|MIAB_NITEC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|114308780|gb|ABI60023.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosomonas eutropha C91] Length = 443 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 209/447 (46%), Positives = 291/447 (65%), Gaps = 16/447 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++K++GCQMN YDS +M D+ S+ E ++ADLI+ NTC +REKA EKV+ L Sbjct: 4 KLYIKTFGCQMNEYDSAKMADILLSEKNMELTEVPEEADLILFNTCSVREKAQEKVFHDL 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143 GR+R+LKNS+ DLL+ V GCVA EG EI+RR+P V++V GPQT +RLPEL++ R Sbjct: 64 GRVRHLKNSK----PDLLIGVGGCVASQEGSEIVRRAPFVDLVFGPQTLHRLPELIDARR 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R G+ VD + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG E+ Sbjct: 120 RTGQSQVDITFPEIEKFDRLPPA-----RTTGATAFVSIMEGCSKYCSFCVVPYTRGEEV 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR L V+ E L+ GV E+TLLGQNVNA+ K F+ LL + EI GLVR+ Sbjct: 175 SRPLDDVLTEVAGLVIQGVKEVTLLGQNVNAYYDKTSGEGDIDFATLLDYIHEIPGLVRI 234 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPR+ + LI+ + L L+ ++HLP+QSGSDRIL +M R +T EY+ II ++R Sbjct: 235 RYTTSHPREFTARLIETYQRLPKLVGHVHLPIQSGSDRILAAMKRGYTIIEYKSIIRKLR 294 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++RP+I+ISSDFIVGFPGETD DF TM L+D + + ++FSF YSPR GTP S++ + Sbjct: 295 TIRPNISISSDFIVGFPGETDTDFEETMKLIDDVKFDESFSFIYSPRPGTPASDLPDDTP 354 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442 +K RL LQ+K++ + + V I VL+E K+ + GR+ + V+N Sbjct: 355 YRIKLARLHQLQEKIQRNAQMISQSMVDTIQRVLVEGPSKKDPNEFCGRTD--NNRVVNF 412 Query: 443 KNHN--IGDIIKVRITDVKISTLYGEL 467 H +G + ++IT V TL GE+ Sbjct: 413 AGHAGLVGSFVDIKITAVSSHTLRGEI 439 >gi|332993746|gb|AEF03801.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Alteromonas sp. SN2] Length = 477 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 204/447 (45%), Positives = 293/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ S GY + ++AD+I+LNTC IREKA EKV+ Sbjct: 3 KKLYIKTWGCQMNEYDSEKMADLLDSTHGYSAAETAEEADVILLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR +NLK + +L++ V GCVA EG I +R+P V++V GPQT +RLPE++ + Sbjct: 63 LGRWKNLKQDK----PELIIGVGGCVASQEGSVIRQRAPYVDLVFGPQTLHRLPEMINQL 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G K V+D + +KF+RL R G TAF++I EGC K+CTFCVVPYTRG E Sbjct: 119 KGGEKSVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L GV E+ LLGQNVNA+RG+ DG C F++LL ++ I G+ R Sbjct: 174 VSRPVDDVLLEIAQLAGQGVREVNLLGQNVNAFRGENHDGTVCRFAELLELVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + +D +I + + L+ +LHLPVQSGSDRIL M R HTA EY+ I ++ Sbjct: 234 IRYTTSHPVEFTDDIIDVYATIPELVDHLHLPVQSGSDRILNLMKRGHTAIEYKSKIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R VRP+I++SSDFI+GFPGETD DF ATMDL+ I Y +FSF YS R GTP ++ ++ V Sbjct: 294 RKVRPNISMSSDFIIGFPGETDADFEATMDLIQAIDYDLSFSFIYSARPGTPAADAVDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441 E+ K +RL LQ+++ +Q + VG +L+E K+ +L GR+ + V Sbjct: 354 TEDAKKQRLYLLQQRINQQALRIARNMVGTEQRILVEGPSKKNPMELSGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG+ + V +TDV ++L G+++ Sbjct: 414 GTPDMIGEFVDVEVTDVFSNSLRGDVI 440 >gi|332306418|ref|YP_004434269.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173747|gb|AEE23001.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Glaciecola agarilytica 4H-3-7+YE-5] Length = 477 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 199/447 (44%), Positives = 295/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ + GY+ ++ ++AD+I+LNTC IREKA EKV+ Sbjct: 3 KKLFIKTWGCQMNEYDSQKMADLLDTTHGYQVADTAEEADIILLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR +NLK + +L++ V GCVA EG+ I +R+P V++V GPQT +RLPE++ + Sbjct: 63 LGRWKNLKQDK----PELIIGVGGCVASQEGQVIRQRAPFVDLVFGPQTLHRLPEMINQI 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G V+D + +KF+RL R G TAF++I EGC K+CTFCVVPYTRG E Sbjct: 119 KGGSASVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DG CTF++LL ++ I G+ R Sbjct: 174 VSRPVDDVLLEVAQLAEQGVREVNLLGQNVNAFRGPHHDGAICTFAELLEMVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + +D +I+A+ + L+ +LHLPVQSGSDR+L M R HTA EY+ I ++ Sbjct: 234 IRYTTSHPVEFTDDIIEAYATIPELVDHLHLPVQSGSDRVLNLMKRGHTAIEYKSKIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RP++++SSDFI+GFPGE+D DF ATMDL+ + + +FSF YS R GTP +++ + V Sbjct: 294 RKIRPNLSMSSDFIIGFPGESDTDFEATMDLIQAMDFDLSFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441 E K ERL LQ ++ +Q + + +L+E K+ +L GR+ + V Sbjct: 354 SEATKKERLQLLQNRITQQALRIARNMIDSEQRILVEGPSKKNPMELSGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L G+++ Sbjct: 414 GTPDMIGGFVDVKITDVFANSLRGDVL 440 >gi|332285327|ref|YP_004417238.1| hypothetical protein PT7_2074 [Pusillimonas sp. T7-7] gi|330429280|gb|AEC20614.1| hypothetical protein PT7_2074 [Pusillimonas sp. T7-7] Length = 497 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 207/449 (46%), Positives = 292/449 (65%), Gaps = 13/449 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F++++GCQMN YDS +M D+ QG E + ++AD+I+ NTC +REKA EKV+S Sbjct: 49 RKLFIRTFGCQMNEYDSDKMADVLREDQGVEITQNPEEADIILFNTCSVREKAQEKVFSD 108 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+++LK + +L++ V GCVA EGE I++R+ V+VV GPQT +RLPEL+ R Sbjct: 109 LGRVQHLKQA----NPNLIIGVGGCVASQEGEAIVKRASYVDVVFGPQTLHRLPELIARR 164 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 165 RESGRSQVDISFPEIEKFDALPPA-----RVDGPTAFVSIMEGCSKYCSFCVVPYTRGAE 219 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLV 261 +SR V+ E L D GV EITLLGQNVNA+RG + F+ LL + EI GL Sbjct: 220 VSRPFDDVLMEVADLADQGVKEITLLGQNVNAYRGPMRESANIADFAMLLEYVHEIPGLE 279 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP++M+ LI+AHG L L+P+LHLPVQ+GSD IL +M R +T E++ I+ R Sbjct: 280 RIRYTTSHPKEMTSRLIEAHGALPKLVPFLHLPVQAGSDTILAAMKRGYTTLEFKSIVRR 339 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RP + +SSDFIVGFPGET+D+F TM L+ +G+ Q+FSF YS R GTP +++ + Sbjct: 340 LRAARPGLTLSSDFIVGFPGETEDEFEKTMKLIRDVGFDQSFSFIYSRRPGTPAADLEDD 399 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 + +K ERL LQ + EQ + + + +G +L+EK + K L GR+ + V Sbjct: 400 TPKELKLERLHRLQALINEQADAISQSMLGTTQRILVEKPSRRDPKELSGRTENNRIVNF 459 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 + IG +I VRIT +TL GE+V Sbjct: 460 VGQPRLIGQMIDVRITQTMTNTLKGEIVT 488 >gi|157369463|ref|YP_001477452.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Serratia proteamaculans 568] gi|229890662|sp|A8GB34|MIAB_SERP5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|157321227|gb|ABV40324.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Serratia proteamaculans 568] Length = 474 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 205/448 (45%), Positives = 292/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ ++AD+++LNTC IREKA EKV++ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLGSTHGYQWTDNAEEADVLLLNTCSIREKAQEKVFAM 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK ++ L++ V GCVA EGE I R+P V+VV GPQT +RLPE+L Sbjct: 63 LGRWRLLK----EKNPALIIGVGGCVASQEGEHIRSRAPCVDVVFGPQTLHRLPEMLNHV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R +VD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG Sbjct: 119 Q-GTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR V+ E +L GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ Sbjct: 173 EVSRPSDDVLFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RIRYTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPDI +SSDFI+GFPGET DF TM+L+ +I + +FSF YS R GTP ++M++ Sbjct: 293 LRKARPDIQLSSDFIIGFPGETQADFEQTMNLIAEINFDTSFSFIYSSRPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E+ K +RL LQ ++ +Q + F+ +G + +L+E ++ +L GR+ + V Sbjct: 353 VSEDEKKQRLYILQDRINQQVLQFSRRMLGTVQRILVEGTSRKSVMELAGRTACNRMVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V IT+V ++L G +V Sbjct: 413 EGTPDMIGQFVDVEITEVLTNSLRGTVV 440 >gi|52425745|ref|YP_088882.1| MiaB protein [Mannheimia succiniciproducens MBEL55E] gi|81386786|sp|Q65RW3|MIAB_MANSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|52307797|gb|AAU38297.1| MiaB protein [Mannheimia succiniciproducens MBEL55E] Length = 474 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 204/447 (45%), Positives = 294/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS +M D+ S G E + AD+++LNTC IREKA EKV+ Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLQSTHGLELTEEAEQADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K+ +L++ V GCVA EGE I R+P V+++ GPQT +RLPE++ + Sbjct: 63 LGRWKELK----KKNPNLVIGVGGCVASQEGEHIRERAPYVDIIFGPQTLHRLPEMINQI 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G K V+D + +KF+RL + G TAF++I EGC+K+CT+CVVPYTRG E Sbjct: 119 RAGEKAVLDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCNKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L + GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R Sbjct: 174 VSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGGICSFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTS+P + +D +I + D L+ +LHLPVQ+GSDRIL M R HTA EY+ II ++ Sbjct: 234 LRFTTSNPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRILTMMKRGHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+VRP+I ISSDFIVGFPGET+++F TM+L+ ++ + +FSF YS R GTP ++M + V Sbjct: 294 RAVRPNIQISSDFIVGFPGETNEEFEQTMNLIQQVNFDMSFSFVYSARPGTPAADMPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ Q F+ A +G VL+E K+ +L GR+ + V Sbjct: 354 TEEEKKQRLYILQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFA 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + ++ITDV ++L G++V Sbjct: 414 GTPDMIGKFVDIKITDVFTNSLRGDVV 440 >gi|219871156|ref|YP_002475531.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haemophilus parasuis SH0165] gi|219691360|gb|ACL32583.1| bifunctional enzyme involved in thiolation andmethylation of tRNA [Haemophilus parasuis SH0165] Length = 463 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 204/436 (46%), Positives = 289/436 (66%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ S G E + ++AD+++LNTC IREKA EKV+S LGR +N K Sbjct: 1 MNEYDSSKMADLLNSTHGLELTENPEEADILLLNTCSIREKAQEKVFSQLGRWKNWK--- 57 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153 K+ DL++ V GCVA EGE I R+P V++V GPQT +RLPE++ + R GK VVD Sbjct: 58 -KDKPDLIIGVGGCVASQEGEHIRERAPFVDIVFGPQTLHRLPEMINQIRGGKSSVVDIS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+RL R G TAF++I EGC+K+C+FCVVPYTRG E+SR + V+ E Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L + GV E+ LLGQNVNA+RG+ DG C+F++LL ++ I G+ R+RYTTSHP + Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGETFDGGICSFAELLRLVASIDGIDRVRYTTSHPIEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D +I+ + D L+ +LHLP+QSGSDR+L M R HTA EY+ II ++R RPDI ISS Sbjct: 232 TDDIIEVYKDTPELVSFLHLPIQSGSDRVLTMMKRNHTALEYKAIIRKLREARPDIQISS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFIVGFPGET DF TM +++++ + +FSF YS R GTP +++ + V E+ K ERL Sbjct: 292 DFIVGFPGETAQDFEQTMKIIEQVNFDMSFSFIYSARPGTPAADLPDDVTEDEKKERLYR 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ+++ Q + F+ A +G +L+E K+ +L GR+ + V + IG + Sbjct: 352 LQQRINNQAMQFSRAMLGTEQRILVEGPSKKDIMELTGRTESNRIVNFQGTPNMIGKFVD 411 Query: 453 VRITDVKISTLYGELV 468 V+ITDV ++L GE+V Sbjct: 412 VKITDVYTNSLRGEVV 427 >gi|296134800|ref|YP_003642042.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thiomonas intermedia K12] gi|295794922|gb|ADG29712.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thiomonas intermedia K12] Length = 439 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 208/446 (46%), Positives = 292/446 (65%), Gaps = 15/446 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ ++GYE + +ADLI+LNTC IREKA EKV+S Sbjct: 3 KKVFIKTFGCQMNEYDSAKMADVLSAAEGYEPAATPQEADLILLNTCSIREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR+R LK + +LL+ V GCVA EGE I++R+P V++V GPQT +RLP+L+ +R Sbjct: 63 LGRLRELKADK----PNLLIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPQLIAQR 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 QALGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L GV E+TLLGQNVNAW G G +GE F LL ++EI G+ R Sbjct: 174 VSRPLVDVLTEVAELASLGVREVTLLGQNVNAWLGSG-EGEDFAF--LLECVAEIDGIER 230 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP++ + LI A+G + L+ ++HLPVQ GSDRIL +M R +TA E++ I+ R+ Sbjct: 231 IRYTTSHPKEFTQRLIDAYGRIPKLVNHVHLPVQHGSDRILAAMKRGYTALEFKSIVRRL 290 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+VRPDI I SDFIVGFPGET+ DF M L++ + + +FSF +SPR GTP +N+ + Sbjct: 291 RAVRPDICIGSDFIVGFPGETEADFAQLMKLIEDMQFDASFSFIFSPRPGTPAANLADDT 350 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN 441 +VK +RL LQ ++ Q + + A V VLIE K+ +L GR+ + V L Sbjct: 351 PADVKLKRLQTLQAQIETQASAISAAMVDTEQAVLIEGPSKKDPSELQGRTENNRIVHLK 410 Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467 + IG I+ VRIT +L GE+ Sbjct: 411 ANARLIGQIVPVRITTAYPHSLRGEV 436 >gi|325914746|ref|ZP_08177084.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas vesicatoria ATCC 35937] gi|325539023|gb|EGD10681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas vesicatoria ATCC 35937] Length = 489 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 206/456 (45%), Positives = 298/456 (65%), Gaps = 14/456 (3%) Query: 21 CIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEK 79 +V + ++K++GCQMN YDS +M D+ S+G E ++ +DAD++++NTC IREKA EK Sbjct: 32 AVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEK 91 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 V+S LGR R LK SR K GG +++ V GCVA EGE I++R+P V++V GPQT +RLPE Sbjct: 92 VFSQLGRWRLLKESRAKAGGTPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPE 151 Query: 139 LLE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 L+ R + GK VD + +KF+RL R G +AF++I EGC K+C+FCVVPY Sbjct: 152 LIRARRQSGKSQVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYCSFCVVPY 206 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDG-EKCTFSDL---LY 252 TRG E+SR V+ E +L GV EI LLGQNVNA+RG G D E ++DL + Sbjct: 207 TRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADADEAAQYADLGLLIR 266 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 ++++I+G+ R+R+TTSHP + SD L+ A+ + L YLHLPVQ+GSDRIL +M R +TA Sbjct: 267 TIAQIEGIGRIRFTTSHPLEFSDSLVDAYRGVPQLANYLHLPVQAGSDRILSAMKRGYTA 326 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 E++ I ++R+VRPDI+ISSDFIVGFPGET+ DF TM L++ +G+ Q+FSF YS R G Sbjct: 327 LEFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPG 386 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGR 431 TP +++ + + VK RL LQ + + + + VG + VL+E ++ +L G+ Sbjct: 387 TPAADLEDDTPDAVKQARLARLQAHISAHAATISQSMVGSVQRVLVEGPSRRDPNELTGK 446 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 S ++ V IG + V IT+ ++L G + Sbjct: 447 SENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 482 >gi|319786436|ref|YP_004145911.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudoxanthomonas suwonensis 11-1] gi|317464948|gb|ADV26680.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudoxanthomonas suwonensis 11-1] Length = 484 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 206/450 (45%), Positives = 296/450 (65%), Gaps = 16/450 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++K++GCQMN YDS RM D+ +G E ++ ++AD++++NTC IREKA EKV+S L Sbjct: 44 KLYIKTHGCQMNEYDSARMADVLAEHEGLELTDNPEEADVVLVNTCSIREKAQEKVFSQL 103 Query: 85 GRIRNLKNSRIKEGG-DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 GR + LK EGG ++++ V GCVA EGE I++R+P V++V GPQT +RLPEL+ Sbjct: 104 GRWKALK-----EGGREVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRAR 158 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R +R VD + +KF+RL R G +AF++I EGC K+C+FCVVPYTRG E Sbjct: 159 REQQRPQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGTE 213 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR V+ E +L GV EI LLGQNVNA+RG +G E L+ ++++I+G+ Sbjct: 214 VSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGPMGEGTEEVADLGLLIRTIAQIEGI 273 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP + SD L++A+ D+ L YLHLPVQSGSDRIL +M R +T E++Q I Sbjct: 274 GRIRFTTSHPLEFSDSLVEAYRDVPQLANYLHLPVQSGSDRILGAMKRGYTTLEFKQKIR 333 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R+VRPDI+ISSDFIVGFPGETD DF TM L++ +G+ Q+FSF YS R GTP +++ + Sbjct: 334 KLRAVRPDISISSDFIVGFPGETDADFEKTMKLIEDVGFDQSFSFIYSRRPGTPAADLPD 393 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439 V + K RL LQ + ++A VG + VL+E K+ +L G++ ++SV Sbjct: 394 DVGDEAKHARLSRLQATINANAARISEAMVGSVQTVLVEGPSKKNPAELTGKTENMRSVN 453 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 +G + VRIT ++L GELV+ Sbjct: 454 FPGNPRLVGQFVDVRITAALTNSLRGELVL 483 >gi|91762485|ref|ZP_01264450.1| tRNA-i(6)A37 modification enzyme [Candidatus Pelagibacter ubique HTCC1002] gi|91718287|gb|EAS84937.1| tRNA-i(6)A37 modification enzyme [Candidatus Pelagibacter ubique HTCC1002] Length = 455 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 195/445 (43%), Positives = 294/445 (66%), Gaps = 10/445 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K++GCQMN YDS R+ D G+E+ +DA+ +LNTCHIR+KA EKVY + Sbjct: 12 KKIFIKTFGCQMNEYDSNRIFDTVKKIGFEKTEKYEDANCYLLNTCHIRDKAKEKVYHEI 71 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE-LLERA 143 GR++ + +E +V+VAGCVAQAE +E+L+R P +++V+GPQ+Y+++ E +L Sbjct: 72 GRVKKI----FREKKKPIVIVAGCVAQAENQEMLKREPYIDIVIGPQSYHKINEAILNHL 127 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + K+ +T++ KF LS + N+ V++FLTIQEGCDKFC FCVVPYTRG E Sbjct: 128 KNKKKEEETEFDTISKFNYLSQIK---NKDSKVSSFLTIQEGCDKFCHFCVVPYTRGPEY 184 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR Q+++EA++L+ +G EI LLGQNVNA+ +G++ SDLL L L R+ Sbjct: 185 SRPFDQIINEAKELVQSGAKEIILLGQNVNAY-SYDEEGKEYRLSDLLIKLDSFDKLERI 243 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP+DM+D LI + LMP +HLPVQSGS++IL MNR+HT EY + +++R Sbjct: 244 RYTTSHPKDMTDDLINVYKTSSKLMPLVHLPVQSGSNKILNLMNRKHTIEEYLLVYEKLR 303 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P I SSDFI+G+P E + DF+ TM+L++K+ + ++SF +SPR GT +N L VD Sbjct: 304 KINPKIEFSSDFIIGYPEEDEQDFKMTMELIEKVKFINSYSFIFSPRPGTVAAN-LTLVD 362 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + +RL +Q+KL Q+ N + +I+ VL+E K+ KL GR+ ++ SV+ + Sbjct: 363 QKKSKQRLEIIQEKLFNNQIKKNKSLENKILNVLVENKMKDGIKLFGRTEYMASVIFDGN 422 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 NIG +++V IT ++L+G+L Sbjct: 423 IENIGKLVQVEITSSNQNSLFGKLT 447 >gi|270263724|ref|ZP_06191993.1| hypothetical protein SOD_e03490 [Serratia odorifera 4Rx13] gi|270042608|gb|EFA15703.1| hypothetical protein SOD_e03490 [Serratia odorifera 4Rx13] Length = 497 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 204/448 (45%), Positives = 292/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S G+E ++ ++AD+++LNTC IREKA EKV++ Sbjct: 26 KKLHIKTWGCQMNEYDSSKMADLLGSTHGFEWTDNAEEADVLLLNTCSIREKAQEKVFAM 85 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ L++ V GCVA EGE I R+P V+VV GPQT +RLPE++ Sbjct: 86 LGRWKLLK----EKNPALIIGVGGCVASQEGEHIRSRAPCVDVVFGPQTLHRLPEMINHV 141 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R +VD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG Sbjct: 142 R-GTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 195 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR V+ E +L GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ Sbjct: 196 EVSRPSDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAIDGID 255 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 256 RIRFTTSHPIEFTDDIIAVYQDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRK 315 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RP+I +SSDFI+GFPGET DF TM+LV +I + +FSF YS R GTP ++M++ Sbjct: 316 LRKARPNIQLSSDFIIGFPGETQADFEQTMNLVAEINFDASFSFIYSSRPGTPAADMVDD 375 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E+ K +RL LQ ++ +Q + F+ +G + +L+E ++ +L GR+ + V Sbjct: 376 VSEDEKKQRLYILQDRINQQVLQFSRRMLGTVQRILVEGTSRKSLMELAGRTECNRMVNF 435 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V IT+V +TL G +V Sbjct: 436 EGTPDMIGQFVDVEITEVMTNTLRGAVV 463 >gi|91775006|ref|YP_544762.1| tRNA-i(6)A37 modification enzyme MiaB [Methylobacillus flagellatus KT] gi|122985599|sp|Q1H3L6|MIAB_METFK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|91708993|gb|ABE48921.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylobacillus flagellatus KT] Length = 442 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 209/449 (46%), Positives = 284/449 (63%), Gaps = 12/449 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +P+R F+K++GCQMN YDS RM DM ++G + ++ ++AD+I+LNTC +REKA EKV+ Sbjct: 3 LPKRIFIKTFGCQMNEYDSSRMLDMLQAAEGMQTTDNPEEADVILLNTCSVREKAQEKVF 62 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGR LK ++ DL++ V GCVA EGE I+ R+P V+VV GPQT +RLP+++E Sbjct: 63 SHLGRFAPLK----EKNPDLVIGVGGCVASQEGESIVARAPYVDVVFGPQTLHRLPDMIE 118 Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + R G VD + +KF+ L R G AFL+I EGC K+CTFCVVPYTRG Sbjct: 119 SKRRTGISQVDISFPEVEKFDHLP-----PPRVEGAAAFLSIMEGCSKYCTFCVVPYTRG 173 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E+SR ++ EA +L + GV EITLLGQNVN +R + DGE + L+ L+EI + Sbjct: 174 DEVSRPFDDILTEAIQLAEQGVKEITLLGQNVNGYRSETADGEMADLALLIEYLAEIPEI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP +M+ LI + + L+ +LHLPVQ+GSDR+L +M R +T +Y+ II Sbjct: 234 ERIRYTTSHPNEMTPALIDCYARIPKLVSHLHLPVQAGSDRVLMNMKRNYTVLQYKSIIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R+ RPDI ISSDFIVGFPGET+ DF ATM L+ +G+ +FSF YSPR GTP S + + Sbjct: 294 KLRAARPDICISSDFIVGFPGETEQDFEATMKLMRDVGFDFSFSFIYSPRPGTPASYLPD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439 K RL LQ Q + + + VG I VLIE K +L GR+ + V Sbjct: 354 DCSPEEKQSRLSRLQALNEAQGKAISASMVGSIQRVLIESVSAKRADELAGRTDNNRIVN 413 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 I + VRIT+ TL GELV Sbjct: 414 FPGDTALINQFVNVRITEALSHTLRGELV 442 >gi|264680203|ref|YP_003280113.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni CNB-2] gi|299533989|ref|ZP_07047341.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Comamonas testosteroni S44] gi|262210719|gb|ACY34817.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni CNB-2] gi|298717898|gb|EFI58903.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Comamonas testosteroni S44] Length = 442 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 207/449 (46%), Positives = 292/449 (65%), Gaps = 15/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ +QGYE ++D+ADLI+ NTC +REKA EKV+S Sbjct: 3 KKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTQNVDEADLILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGRIR+LK + L+ V GCVA EG EI++R+P V+VV GPQT +RLPELL +R Sbjct: 63 LGRIRHLKEKGV------LIGVGGCVASQEGAEIIKRAPFVDVVFGPQTLHRLPELLNQR 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A K VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 117 AAKAKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L + GV EITLLGQNVNA+ GK G E F+ LL ++EI G+ Sbjct: 172 VSRPFEDVLVEVAGLAEQGVKEITLLGQNVNAYLGKMGDSSEMADFALLLEYVAEIPGIE 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP + + LI+A+ + L+ +LHLPVQ GSD+IL +M R +TA EY+ I + Sbjct: 232 RIRYTTSHPNEFTPRLIEAYAKIPQLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTIRK 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+A+SSDFIVGFPGET++DF+ M L+ + + +FSF +SPR GTP +N+ + Sbjct: 292 LRAIRPDLAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDD 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440 VK RL LQ + ++ VG + +L+E K G +L+GR+ + V Sbjct: 352 TPHEVKLRRLQELQAVINTNIKEISEERVGTVQRLLVEGVSKRDGSELMGRTYCNRVVNF 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 IG ++ V+IT+ K TL GE++V Sbjct: 412 PGNERLIGQMVDVKITEAKAYTLRGEVLV 440 >gi|121595917|ref|YP_987813.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acidovorax sp. JS42] gi|229890416|sp|A1WBW2|MIAB_ACISJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|120607997|gb|ABM43737.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax sp. JS42] Length = 448 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 205/449 (45%), Positives = 292/449 (65%), Gaps = 15/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ +QGYE + + ADLI+ NTC +REKA EKV+S Sbjct: 3 KKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTDDPEQADLILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+++LK+ + L+ V GCVA EGEEI++R+P V+VV GPQT +RLPELL R Sbjct: 63 LGRVKHLKDKGV------LIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPELLNAR 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A + VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 117 AAKARPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L D GV E+TLLGQNVNA+ G G EK F+ LL ++EI G+ Sbjct: 172 VSRPFEDVLVEVAGLADQGVKEVTLLGQNVNAYLGAMGDTAEKADFALLLEYVAEIPGIE 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + + LI+A+ + L+ +LHLPVQ GSDRIL +M R +TA EY+ I + Sbjct: 232 RIRFTTSHPNEFTPRLIEAYAKIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTIRK 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+A+SSDFIVGFPGET++DF+ M L+D + + +FSF +SPR GTP +N+ + Sbjct: 292 LRAIRPDMAMSSDFIVGFPGETEEDFQKMMKLIDDVRFDNSFSFIFSPRPGTPAANLHDD 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440 VK RL LQ + + + VG + +L+E K G +L+GR+ + V Sbjct: 352 TPHEVKLRRLQELQAVINRNILEISQERVGTVQRLLVEGVSKRDGSELMGRTECNRVVNF 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 IG +I V+IT+ + TL GE+V+ Sbjct: 412 PGHERLIGQMIDVKITEARTYTLRGEVVM 440 >gi|300722332|ref|YP_003711617.1| hypothetical protein XNC1_1347 [Xenorhabdus nematophila ATCC 19061] gi|297628834|emb|CBJ89412.1| involved in methylthiolation of isopentenylated A37 derivatives in tRNA, Fe-S protein [Xenorhabdus nematophila ATCC 19061] Length = 476 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 198/447 (44%), Positives = 292/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 5 KKLYIKTWGCQMNEYDSSKMADLLETTHGYQLTDVAEEADILLLNTCSIREKAQEKVFHQ 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + D+++ V GCVA EG+ I +R+P V+++ GPQT +RLPE++ Sbjct: 65 LGRWKGLKD----KNPDVIIGVGGCVASQEGDFIRQRAPSVDIIFGPQTLHRLPEMINHV 120 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + +VD + +KF+RL R G +AF++I EGC+K+CTFCVVPYTRG E Sbjct: 121 KGTHSPIVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTFCVVPYTRGEE 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ CTF++LL ++ I G+ R Sbjct: 176 VSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGATFDGDICTFAELLRLVAAIDGIDR 235 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ YLHLPVQSGSDRIL M R HTA EY+ II R+ Sbjct: 236 IRFTTSHPIEFTDDIIAVYEDTPELVSYLHLPVQSGSDRILTLMKRAHTALEYKGIIRRL 295 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGET DDF TM L+ + + +FSF YS R GTP +++ + V Sbjct: 296 RKARPDILISSDFIIGFPGETQDDFEKTMKLIADVNFDMSFSFIYSARPGTPAADLPDDV 355 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 +E K +RL LQ+++ +Q +SF+ A +G +L+E ++ +L GR+ + V Sbjct: 356 NEEEKKQRLYLLQQRINQQAMSFSRAMIGNTQRILVEGPSRKNIMELSGRTENNRVVNFE 415 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G+++ Sbjct: 416 GTPDMIGKFVDVEIVDVYANSLRGKVI 442 >gi|71279941|ref|YP_270240.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Colwellia psychrerythraea 34H] gi|123631590|sp|Q47Y80|MIAB_COLP3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|71145681|gb|AAZ26154.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Colwellia psychrerythraea 34H] Length = 480 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 198/447 (44%), Positives = 296/447 (66%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M ++ S G+ V + AD+I+LNTC IREKA EKV+ Sbjct: 3 KKLYIKTWGCQMNEYDSQKMAELLDSTHGFSLVEEAEQADVILLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR +NLK+ + DLL+ V GCVA EG+ I +R+P V+++ GPQT +RLPE+L + Sbjct: 63 LGRWKNLKDKK----PDLLIGVGGCVASQEGDSIRKRAPFVDMIFGPQTLHRLPEMLNQL 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K ++D + +KF+RL + G +AF++I EGC K+CTFCVVPYTRG E Sbjct: 119 QHSKSPIIDVSFPEIEKFDRLP-----EPKADGASAFVSIMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L + GV E+ LLGQNVNA+RG+ DG C F+DL+ ++ I G+ R Sbjct: 174 VSRPLDDVLYEIAQLAEQGVREVNLLGQNVNAYRGETHDGSICRFADLVRLVATIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + +D +I+A+ D+ L+ +LHLPVQSG DRIL M R HTA EY+ I ++ Sbjct: 234 IRYTTSHPVEFTDDIIEAYTDVPELVNHLHLPVQSGCDRILTQMKRGHTALEYKSQIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + VRP++++SSDFI+GFPGETD+DF ATMDL+ + + +FSF YS R GTP +++ + + Sbjct: 294 KKVRPELSMSSDFIIGFPGETDEDFTATMDLIKAVDFDLSFSFIYSARPGTPAADLPDDI 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 + K +RL LQ+++ Q + + VL+E K +L G++ ++V Sbjct: 354 SDQTKKDRLKLLQEQITHQALRIARQMLNTEQRVLVEGPSRKNPMELRGKTENNRTVNFV 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG + ++ITDV ++L GELV Sbjct: 414 APHSVIGQFVDIKITDVVANSLRGELV 440 >gi|284009227|emb|CBA76316.1| tRNA-methylthiotransferase MiaB protein [Arsenophonus nasoniae] Length = 476 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 200/448 (44%), Positives = 297/448 (66%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ S GY+ ++AD+++LNTC IREKA EKV+ Sbjct: 5 KKLYIKTWGCQMNEYDSSKMADLLNSTHGYQLTEIAEEADILLLNTCSIREKAQEKVFHQ 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR +NLK + D+++ V GCVA EG+ I +R+P V+++ GPQT +RLPE++ + Sbjct: 65 LGRWKNLK----ELNPDIIIGVGGCVASQEGDFIRQRAPSVDIIFGPQTLHRLPEMINQV 120 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R +VD + +KF+RL R G +A+++I EGC+K+C+FCVVPYTRG Sbjct: 121 K-GTRSPIVDISFPEIEKFDRLP-----EPRAEGPSAYVSIMEGCNKYCSFCVVPYTRGE 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR V+ E +L GV EI LLGQNVNA+RG DG C+F++LL ++ I G+ Sbjct: 175 EVSRPCDDVLFEIAQLAAQGVREIHLLGQNVNAYRGATFDGGICSFAELLRLVAAIDGVD 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + SD +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 235 RIRFTTSHPIEFSDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRSHTALEYKSIIRK 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RP+I ISSDFIVGFPGET+DDF+ TM L+ + + +FSF YSPR GTP +++ + Sbjct: 295 LRKARPNILISSDFIVGFPGETEDDFQKTMQLIADVNFDMSFSFIYSPRPGTPAADLPDD 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E+ K +RL LQ+++ +Q ++++ +G I +L+E ++ +L GR+ + V Sbjct: 355 VSEDEKKQRLYLLQQRINQQAMNYSRTMLGSIQRILVEGPSRKNIMELSGRAENNRVVNF 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG + V I DV ++L G++V Sbjct: 415 EGTQNMIGKFVDVEIVDVYANSLRGKVV 442 >gi|254525252|ref|ZP_05137307.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Stenotrophomonas sp. SKA14] gi|219722843|gb|EED41368.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Stenotrophomonas sp. SKA14] Length = 442 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 205/447 (45%), Positives = 289/447 (64%), Gaps = 12/447 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++K++GCQMN YDS +M D+ S G E +S DDAD+I++NTC IREKA EKV+S L Sbjct: 4 KLYIKTHGCQMNEYDSAKMADVLAASDGLELTDSPDDADVILVNTCSIREKAQEKVFSQL 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G + LKN +G ++++ V GCVA EGE I++R+P V++V GPQT +RLPEL+ R Sbjct: 64 GVWKGLKN----KGREVIIGVGGCVASQEGEAIIKRAPFVDLVFGPQTLHRLPELIRARR 119 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 KR VD + +KF+RL R G +AF++I EGC K+C+FCVVPYTRG E+ Sbjct: 120 EQKRPQVDISFPEIEKFDRLP-----EPRAEGASAFVSIMEGCSKYCSFCVVPYTRGTEV 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR VV E +L GV EI LLGQNVNA+RG DGE L+ +++EI G+ R+ Sbjct: 175 SRPFEDVVVEVAQLAAQGVREINLLGQNVNAYRGPYGDGEFADLGLLIRTIAEIDGVGRI 234 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP + SD LI A D+ L +LHLPVQ+GSDR+L +M R +TA E++ I ++R Sbjct: 235 RFTTSHPLEFSDSLIDAFRDVPQLANFLHLPVQAGSDRVLSAMKRGYTALEFKSKIRKLR 294 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +VRPDI+ISSDFIVGFPGETD DF TM L++ IG+ +FSF YS R GTP +++ + + Sbjct: 295 AVRPDISISSDFIVGFPGETDADFEKTMKLIEDIGFDHSFSFIYSRRPGTPAADLEDTIS 354 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442 + K RL LQ+++ ++ VG + VL+E K +L G++ ++SV + Sbjct: 355 DAEKHARLSRLQERINAHAAGISEKMVGTVQTVLVEGPSRKNPNELTGKTENMRSVNFPA 414 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 IG + V IT+ ++L +V Sbjct: 415 PARLIGQFVDVVITEALTNSLRARVVA 441 >gi|71083088|ref|YP_265807.1| tRNA-i(6)A37 modification enzyme [Candidatus Pelagibacter ubique HTCC1062] gi|123775533|sp|Q4FNN5|MIAB_PELUB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|71062201|gb|AAZ21204.1| tRNA-i(6)A37 modification enzyme [Candidatus Pelagibacter ubique HTCC1062] Length = 446 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 196/445 (44%), Positives = 293/445 (65%), Gaps = 10/445 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K++GCQMN YDS R+ D G+E+ +DA+ +LNTCHIR+KA EKVY + Sbjct: 3 KKIFIKTFGCQMNEYDSNRIFDTVKKIGFEKTEKYEDANCYLLNTCHIRDKAKEKVYHEI 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE-LLERA 143 GR++ + +E +VVVAGCVAQAE +E+L+R P +++V+GPQ+Y+++ E +L Sbjct: 63 GRVKKI----FREKKKPIVVVAGCVAQAENQEMLKREPYIDIVIGPQSYHKINEAILNHL 118 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + K+ +T++ KF LS + N+ V++FLTIQEGCDKFC FCVVPYTRG E Sbjct: 119 KNKKKEEETEFDTISKFNYLSQIK---NKDSKVSSFLTIQEGCDKFCHFCVVPYTRGPEY 175 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR Q+++EA++L+ +G EI LLGQNVNA+ +G+K SDLL L L R+ Sbjct: 176 SRPFDQIINEAKELVQSGAKEIILLGQNVNAY-SYDEEGKKYRLSDLLIKLDSFDKLERI 234 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP+DM+D LI + LMP +HLPVQSGS++IL MNR+HT EY + +++R Sbjct: 235 RYTTSHPKDMTDDLINVYKTSSKLMPLVHLPVQSGSNKILNLMNRKHTIEEYLLVYEKLR 294 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P I SSDFI+G+P E + DF+ TM+L++K+ + ++SF +SPR GT +N L VD Sbjct: 295 KINPKIEFSSDFIIGYPEEDEQDFKMTMELIEKVKFINSYSFIFSPRPGTVAAN-LTLVD 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + +RL +Q+KL Q+ N + +I+ VL+E K+ KL GR+ ++ SV+ + Sbjct: 354 QKKSKQRLEIIQEKLFNNQIKKNKSLENKILNVLVENKMKDGIKLFGRTEYMTSVIFDGN 413 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 NIG +++V I ++L+G+L Sbjct: 414 IENIGKLVQVEIISSNQNSLFGKLT 438 >gi|194365135|ref|YP_002027745.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Stenotrophomonas maltophilia R551-3] gi|229891008|sp|B4SQK7|MIAB_STRM5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|194347939|gb|ACF51062.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Stenotrophomonas maltophilia R551-3] Length = 472 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 205/447 (45%), Positives = 290/447 (64%), Gaps = 12/447 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++K++GCQMN YDS +M D+ S G E +S DDAD+I++NTC IREKA EKV+S L Sbjct: 34 KLYIKTHGCQMNEYDSAKMADVLAASDGLELTDSPDDADVILVNTCSIREKAQEKVFSQL 93 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++LKN +G ++++ V GCVA EGE I++R+P V++V GPQT +RLPEL+ R Sbjct: 94 GVWKSLKN----KGREVIIGVGGCVASQEGEAIIKRAPFVDLVFGPQTLHRLPELIRARR 149 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 KR VD + +KF+RL R G +AF++I EGC K+C+FCVVPYTRG E+ Sbjct: 150 EQKRPQVDISFPEIEKFDRLP-----EPRADGASAFVSIMEGCSKYCSFCVVPYTRGTEV 204 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR VV E +L GV EI LLGQNVNA+RG DGE L+ +++EI G+ R+ Sbjct: 205 SRPFEDVVVEVAQLAAQGVREINLLGQNVNAYRGPYGDGEFADLGLLIRTIAEIDGVGRI 264 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP + SD LI A D+ L +LHLPVQ+GSDR+L +M R +TA E++ I ++R Sbjct: 265 RFTTSHPLEFSDSLIDAFRDVPQLANFLHLPVQAGSDRVLSAMKRGYTALEFKSKIRKLR 324 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +VRPDI+ISSDFIVGFPGETD DF TM L++ IG+ +FSF YS R GTP +++ + + Sbjct: 325 AVRPDISISSDFIVGFPGETDADFEKTMKLIEDIGFDHSFSFIYSRRPGTPAADLEDTIS 384 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442 + K RL LQ+++ ++ VG + VL+E K +L G++ ++SV + Sbjct: 385 DAEKHARLSRLQERINAHAAGISEKMVGTVQTVLVEGPSRKNPNELTGKTENMRSVNFPA 444 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 IG + V IT+ ++L +V Sbjct: 445 PARLIGQFVDVVITEALTNSLRARVVA 471 >gi|322833884|ref|YP_004213911.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rahnella sp. Y9602] gi|321169085|gb|ADW74784.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rahnella sp. Y9602] Length = 474 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 199/447 (44%), Positives = 293/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ ++AD+++LNTC IREKA EKV+S Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDSTHGYQLTDNAEEADILLLNTCSIREKAQEKVFSL 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + LK K+ ++++ V GCVA EGE + +R+P V++V GPQT +RLPE++ Sbjct: 63 LGHWKLLK----KKNPNIIIGVGGCVASQEGEMLRKRAPCVDIVFGPQTLHRLPEMVNHV 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VVD + +KF+RL R G TAF++I EGC+K+C+FCVVPYTRG E Sbjct: 119 RGTKSPVVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E +L GV E+ LLGQNVNA+RG +G CTF++LL ++ I G+ R Sbjct: 174 VSRPCDDVLFEVAQLAAQGVREVNLLGQNVNAYRGDAFEGGVCTFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I+ + D ++ +LHLP+QSGSDRIL M R HT EY+ I ++ Sbjct: 234 IRFTTSHPVEFTDDIIEVYKDTPEVVSFLHLPIQSGSDRILTMMKRPHTVLEYKSTIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPDI SSDFI+GFPGET++DF TMDL+ ++ Y +FSF YSPR GTP ++M++ V Sbjct: 294 RAARPDIHFSSDFIIGFPGETNEDFERTMDLIAQVNYDVSFSFIYSPRPGTPAADMVDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 + K +RL LQ ++ +Q + F+ A +G + +L+E K+ +L GR+ + V Sbjct: 354 SMDEKKQRLALLQDRITQQVMRFSRATLGTVQRILVEGTSRKDIMELTGRTECNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G +V Sbjct: 414 GTPDMIGKFVDVEIVDVYANSLRGVVV 440 >gi|77163772|ref|YP_342297.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrosococcus oceani ATCC 19707] gi|254435338|ref|ZP_05048845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus oceani AFC27] gi|123757951|sp|Q3JEH9|MIAB_NITOC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|76882086|gb|ABA56767.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus oceani ATCC 19707] gi|207088449|gb|EDZ65721.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus oceani AFC27] Length = 447 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 200/444 (45%), Positives = 293/444 (65%), Gaps = 12/444 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS RM D+ S G E + + A++++LNTC +REKA EKV+S Sbjct: 3 KKLYIKTHGCQMNEYDSSRMADVLRESHGLELTSDPEQAEVLLLNTCSVREKAQEKVFSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK SR +L++ V GCVA EGE I R+P V++V GPQT +RLP +L +A Sbjct: 63 LGRWRQLKQSR----PELVIGVGGCVASQEGETIRVRAPYVDLVFGPQTIHRLPAMLTQA 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + VVD + +KF++L R G TAF+++ EGC K+C+FCVVPYTRG E Sbjct: 119 KASSQPVVDLSFPEIEKFDKLP-----EPRAEGPTAFVSVMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR V+ E L + GV EITLLGQNVNA+RG +G+ + L++ ++ I+G+ R Sbjct: 174 ISRPFDDVIAEIVGLAEQGVREITLLGQNVNAYRGSIGEGDTADLALLIHYVASIEGIER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + SD LI+A ++ L+ +LHLPVQSGSDR+L M R HT EY+ + ++ Sbjct: 234 IRFTTSHPVEFSDSLIQAFAEVPALVSHLHLPVQSGSDRMLSLMKRGHTVLEYKAKLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R VRPDI+ISSDFIVG PGET+ DF+AT+ LVD++G+ +FSF YSPR GTP +++ + Sbjct: 294 RQVRPDISISSDFIVGLPGETEADFQATLALVDEVGFDHSFSFIYSPRPGTPAASLPDCT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 +K ERL LQ +LR +++ + V + +VL+E+ K+ L GR+ + V + Sbjct: 354 PIALKKERLAILQGRLRALEIAISRGMVDTVQQVLVERPSKKDPTMLAGRTANNRVVNFS 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465 + +G + +RIT+ ++L G Sbjct: 414 ASQDMVGQFVNIRITEALPNSLRG 437 >gi|134093658|ref|YP_001098733.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Herminiimonas arsenicoxydans] gi|229890608|sp|A4G267|MIAB_HERAR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|133737561|emb|CAL60604.1| putative tRNA-i(6)A37 thiotransferase enzyme MiaB [Herminiimonas arsenicoxydans] Length = 446 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 203/451 (45%), Positives = 296/451 (65%), Gaps = 15/451 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ S G + + +DAD+I+LNTC +REKA EKV+S Sbjct: 3 KKIYIKTFGCQMNEYDSDKMADVLNASDGLIKTDKAEDADVILLNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + DL++ V GCVA EG+ I++R+P V++V GPQT +RLPE+L++ Sbjct: 63 LGRLRELKLLK----PDLMIGVGGCVASQEGDAIIKRAPYVDLVFGPQTLHRLPEMLKQR 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ + + G TAF++I EGC K+C++CVVPYTRG E Sbjct: 119 RSTGRSQVDISFPEIEKFDHMPPA-----KVEGATAFVSIMEGCSKYCSYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L GV EITLLGQNVNA+RG+ DGE F+ L+ ++E++G+ R Sbjct: 174 VSRRFDDVLTEVAGLEAQGVKEITLLGQNVNAYRGEMADGEIADFALLIEYIAEMEGIER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RY TSHP++ + LI + + L+ +L+LP Q GSDRIL +M R +T+ EY+ I+ R+ Sbjct: 234 IRYVTSHPKEFTQRLIDTYAKVPKLVDHLYLPAQHGSDRILAAMKRGYTSLEYKSILRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+VRP+I+ISSDFIVGFPGETD+DF A M L+D IGY +FSF +SPR GTP +N+ + Sbjct: 294 RAVRPNISISSDFIVGFPGETDEDFEAMMKLIDDIGYDNSFSFIFSPRPGTPAANLADDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441 VK +RL LQ + + ++D VG + +L+E K+ +L GR+ + V + Sbjct: 354 PHEVKLKRLQRLQAVIDQNTRRYSDEMVGSVQRILVEGPSKKDADELQGRTENNRVVNFS 413 Query: 442 S---KNHNIGDIIKVRITDVKISTLYGELVV 469 + H IG ++ V IT TL GE+VV Sbjct: 414 AGPNAAHLIGQMVNVNITQSHAYTLRGEIVV 444 >gi|92114455|ref|YP_574383.1| tRNA-i(6)A37 modification enzyme MiaB [Chromohalobacter salexigens DSM 3043] gi|91797545|gb|ABE59684.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chromohalobacter salexigens DSM 3043] Length = 459 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 202/457 (44%), Positives = 296/457 (64%), Gaps = 15/457 (3%) Query: 18 VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKA 76 D+ + ++ F+K++GCQMN YDS RM D+ S E + DAD+I+LNTC IREKA Sbjct: 7 TDRIGMAKKLFIKTHGCQMNEYDSARMADLLGESHALELTDDERDADVILLNTCSIREKA 66 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 EKV+ LGR + LK + DL++ V GCVA EGE I +R+P V++V GPQT +RL Sbjct: 67 QEKVFHQLGRWKKLKAA----NPDLVIGVGGCVASQEGEHIKKRAPHVDMVFGPQTLHRL 122 Query: 137 PELLERARFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 P +L+ + + + VD + +KF+ L G TAF+++ EGC K+CTFCV Sbjct: 123 PTMLDSRQGAETISMVDVTFPEIEKFDHLP-----KPTSDGATAFVSVMEGCSKYCTFCV 177 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 VPYTRG E+SR V++E L D GV EI LLGQNVNA+RG+ G++ ++L+ + Sbjct: 178 VPYTRGEEVSRPFESVMEEVIHLADQGVREINLLGQNVNAYRGENQLGDEIDLAELIGCV 237 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 + ++G+ R+R+TTSHP + SD LI+A+G++ L+ +LHLPVQ+GSDRIL +M R HT E Sbjct: 238 AAVEGIDRIRFTTSHPVEFSDSLIEAYGEIPELVSHLHLPVQAGSDRILAAMKRGHTVEE 297 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 Y ++RIR++RPDI+ SSDFI+GFPGET++DF TM+L+ +IG+ +FSF YSPR GTP Sbjct: 298 YVDKLERIRALRPDISFSSDFIIGFPGETEEDFMDTMNLIQRIGFDASFSFVYSPRPGTP 357 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433 +N+ ++ E K +RL LQ++L +Q + + VG +L+ K+ G+L GR+ Sbjct: 358 AANLEDETPEATKKQRLAILQERLNQQTMQISRRMVGNTERILVTGFSPKDPGQLSGRTE 417 Query: 434 WLQSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468 + V + N IG + V IT+ ++L G+L Sbjct: 418 NNRVVNFRAPNPTELIGYFVDVEITEALPNSLRGDLA 454 >gi|330504998|ref|YP_004381867.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas mendocina NK-01] gi|328919284|gb|AEB60115.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas mendocina NK-01] Length = 459 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 205/450 (45%), Positives = 290/450 (64%), Gaps = 17/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E ++AD+I+LNTC IREKA +KV+S Sbjct: 15 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTEKPEEADVILLNTCSIREKAQDKVFSQ 74 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + DL++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 75 LGRWRELKQA----NPDLVIGVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 130 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VD + +KF+RL R G +AF+++ EGC K+CTFCVVPYTRG E Sbjct: 131 RVTKTAQVDISFPEIEKFDRLP-----EPRVDGPSAFVSVMEGCSKYCTFCVVPYTRGEE 185 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E L + GV E+TLLGQNVN +RG+ DG F++LL++++ + G+ R Sbjct: 186 VSRPLVDVLMEITSLTEKGVKEVTLLGQNVNGYRGEAPDGHIADFAELLHAVAALDGVER 245 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD +I AH ++ L+ YLHLPVQSGSDRIL +M R HTA EY+ I ++ Sbjct: 246 IRYTTSHPLEFSDAIIAAHAEIPQLVKYLHLPVQSGSDRILAAMKRNHTALEYKSRIRKL 305 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ PDI ISSDFIVGFPGET+ DF TM L++ +G+ +FSF YS R GTP +++++ Sbjct: 306 RAAVPDILISSDFIVGFPGETEKDFEQTMKLIEDVGFDFSFSFIYSSRPGTPAADLVDDT 365 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E VK +RL LQ ++ + + VG + +L+ + K+ G L GR+ Q+ ++N Sbjct: 366 PEEVKKQRLALLQHRINQNGFENSRRMVGTVQRILVSDYSKKDPGMLQGRTE--QNRIVN 423 Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELV 468 + N IG + V I D +L G L+ Sbjct: 424 FRCDNPRLIGQFVDVHIDDALPHSLRGTLL 453 >gi|221065180|ref|ZP_03541285.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni KF-1] gi|220710203|gb|EED65571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni KF-1] Length = 442 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 207/449 (46%), Positives = 292/449 (65%), Gaps = 15/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ +QGYE ++D+ADLI+ NTC +REKA EKV+S Sbjct: 3 KKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTQNVDEADLILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGRIR+LK + L+ V GCVA EG EI++R+P V+VV GPQT +RLPELL +R Sbjct: 63 LGRIRHLKEKGV------LIGVGGCVASQEGAEIIKRAPFVDVVFGPQTLHRLPELLNQR 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A K VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 117 AAKAKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L + GV EITLLGQNVNA+ GK G E F+ LL ++EI G+ Sbjct: 172 VSRPFEDVLVEVAGLAEQGVKEITLLGQNVNAYLGKMGDTSEMADFALLLEYVAEIPGIE 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP + + LI+A+ + L+ +LHLPVQ GSD+IL +M R +TA EY+ I + Sbjct: 232 RIRYTTSHPNEFTPRLIEAYARIPQLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTIRK 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+A+SSDFIVGFPGET++DF+ M L+ + + +FSF +SPR GTP +N+ + Sbjct: 292 LRAIRPDLAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDD 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440 VK RL LQ + ++ VG + +LIE K G +L+GR+ + V Sbjct: 352 TPHEVKLRRLQELQAVINSHIKEISEERVGTVQRLLIEGVSKRDGSELMGRTYCNRVVNF 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 IG ++ V+IT+ K TL GE+++ Sbjct: 412 PGNARLIGQMVDVKITEAKAYTLRGEVLL 440 >gi|222112105|ref|YP_002554369.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acidovorax ebreus TPSY] gi|221731549|gb|ACM34369.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax ebreus TPSY] Length = 448 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 204/449 (45%), Positives = 291/449 (64%), Gaps = 15/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ +QGYE + + ADLI+ NTC +REKA EKV+S Sbjct: 3 KKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTDDPEQADLILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+++LK+ + L+ V GCVA EGEEI++R+P V+VV GPQT +RLP+LL R Sbjct: 63 LGRVKHLKDKGV------LIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPDLLNAR 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A + VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 117 AAKARPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L D GV E+TLLGQNVNA+ G G EK F+ LL ++EI G+ Sbjct: 172 VSRPFEDVLVEVAGLADQGVREVTLLGQNVNAYLGAMGDTAEKADFALLLEYVAEIPGIE 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + + LI+A+ + L+ +LHLPVQ GSDRIL +M R +TA EY+ I + Sbjct: 232 RIRFTTSHPNEFTPRLIEAYAKIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTIRK 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+A+SSDFIVGFPGET++DF+ M L+D + + +FSF +SPR GTP +N+ + Sbjct: 292 LRAIRPDMAMSSDFIVGFPGETEEDFQKMMKLIDDVRFDNSFSFIFSPRPGTPAANLHDD 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440 VK RL LQ + + + VG + +L+E K G +L+GR+ + V Sbjct: 352 TPHEVKLRRLQELQAVINRNILEISQERVGTVQRLLVEGVSKRDGSELMGRTECNRVVNF 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 IG +I V+IT+ + TL GE+V Sbjct: 412 PGHERLIGQMIDVKITEARTYTLRGEVVT 440 >gi|91787018|ref|YP_547970.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Polaromonas sp. JS666] gi|123355998|sp|Q12EH0|MIAB_POLSJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|91696243|gb|ABE43072.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polaromonas sp. JS666] Length = 447 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 202/449 (44%), Positives = 289/449 (64%), Gaps = 15/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ + +GYE ++D+ADLI+ NTC +REKA EKV+S Sbjct: 3 KKVFIKTFGCQMNEYDSDKMSDVLHAAEGYEPTQNVDEADLILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR+++LK + L+ V GCVA EG I++R+P V+VV GPQT +RLP+LL +R Sbjct: 63 LGRVKHLKEKGV------LIGVGGCVASQEGAAIIQRAPYVDVVFGPQTLHRLPDLLAKR 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 AR K VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 117 ARLNKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L D GV E+TLLGQNVNA+RG G E F+ LL +S+I G+ Sbjct: 172 VSRPFDDVLVEVAGLADQGVKEVTLLGQNVNAYRGPMGDTAEIADFATLLEYVSDIPGIE 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RY TSHP + + LI A+ L L+ +LHLPVQ GSDRIL +M R +TA EY+ I + Sbjct: 232 RIRYVTSHPNEFTQSLIDAYARLPKLVNHLHLPVQHGSDRILMAMKRGYTAMEYKSTIRK 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+A+SSDFIVGFPGET+DDF M L+D +GY +FSF YSPR GTP + + + Sbjct: 292 LRAIRPDLAMSSDFIVGFPGETEDDFNKMMKLIDDVGYDTSFSFIYSPRPGTPAAALHDD 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440 VK RL LQ + + + + + +G + +L+E K+ +L+GR+ + V Sbjct: 352 TPHEVKLRRLQHLQATIDDSVRAISASRLGTVQRILVEGASRKDPTELMGRTECNRVVNF 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 + IG ++ + IT +L GE++ Sbjct: 412 KGQPRLIGQMVDITITQATQRSLRGEVLT 440 >gi|88860583|ref|ZP_01135221.1| Fe-S protein [Pseudoalteromonas tunicata D2] gi|88817781|gb|EAR27598.1| Fe-S protein [Pseudoalteromonas tunicata D2] Length = 476 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 203/447 (45%), Positives = 294/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ ++AD+I+LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSQKMADLLDATNGYQLTEEAENADVILLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + DL++ V GCVA EGE I +R+P V++V GPQT +RLPE++++ Sbjct: 63 LGRWKLLKD----DNPDLVIGVGGCVASQEGEVIRQRAPFVDIVFGPQTLHRLPEMIKQV 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + VVD + +KF+RL + G +AF++I EGC K+CTFCVVPYTRG E Sbjct: 119 QLKQGAVVDISFPEIEKFDRLP-----EPKAEGPSAFVSIMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L + GV E+ LLGQNVNA+RGK DGE C FSDLL ++ I G+ R Sbjct: 174 VSRPLDDVILEIAQLAEQGVREVNLLGQNVNAYRGKMHDGEICYFSDLLRYVATIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + + +I+A+ D+ L+ +LHLPVQSGSDRIL M R HTA EY+ I ++ Sbjct: 234 IRYTTSHPIEFTPDIIEAYADIPELVDHLHLPVQSGSDRILALMKRGHTALEYKSTIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + VRP++++SSDFI+GFPGET DF ATM+L++ IG+ +FSF YS R GTP +++ + V Sbjct: 294 KKVRPNLSMSSDFIIGFPGETTADFEATMNLINDIGFDMSFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441 E K ERL LQ ++ + + G +L+E K+ +L GR+ + V Sbjct: 354 SEQEKKERLYILQNRITQFAQQISRQMFGTEQRILVEGPSKKNPMELRGRTENNRVVNFV 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + IG + V+IT+ ++L G+LV Sbjct: 414 GDHKLIGQFVDVKITEALPNSLRGDLV 440 >gi|229890695|sp|Q1QV24|MIAB_CHRSD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 448 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 201/450 (44%), Positives = 293/450 (65%), Gaps = 15/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS RM D+ S E + DAD+I+LNTC IREKA EKV+ Sbjct: 3 KKLFIKTHGCQMNEYDSARMADLLGESHALELTDDERDADVILLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK + DL++ V GCVA EGE I +R+P V++V GPQT +RLP +L+ Sbjct: 63 LGRWKKLKAA----NPDLVIGVGGCVASQEGEHIKKRAPHVDMVFGPQTLHRLPTMLDSR 118 Query: 144 RFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + + + VD + +KF+ L G TAF+++ EGC K+CTFCVVPYTRG Sbjct: 119 QGAETISMVDVTFPEIEKFDHLP-----KPTSDGATAFVSVMEGCSKYCTFCVVPYTRGE 173 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR V++E L D GV EI LLGQNVNA+RG+ G++ ++L+ ++ ++G+ Sbjct: 174 EVSRPFESVMEEVIHLADQGVREINLLGQNVNAYRGENQLGDEIDLAELIGCVAAVEGID 233 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + SD LI+A+G++ L+ +LHLPVQ+GSDRIL +M R HT EY ++R Sbjct: 234 RIRFTTSHPVEFSDSLIEAYGEIPELVSHLHLPVQAGSDRILAAMKRGHTVEEYVDKLER 293 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR++RPDI+ SSDFI+GFPGET++DF TM+L+ +IG+ +FSF YSPR GTP +N+ ++ Sbjct: 294 IRALRPDISFSSDFIIGFPGETEEDFMDTMNLIQRIGFDASFSFVYSPRPGTPAANLEDE 353 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440 E K +RL LQ++L +Q + + VG +L+ K+ G+L GR+ + V Sbjct: 354 TPEATKKQRLAILQERLNQQTMQISRRMVGNTERILVTGFSPKDPGQLSGRTENNRVVNF 413 Query: 441 NSKNHN--IGDIIKVRITDVKISTLYGELV 468 + N IG + V IT+ ++L G+L Sbjct: 414 RAPNPTELIGYFVDVEITEALPNSLRGDLA 443 >gi|254282405|ref|ZP_04957373.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium NOR51-B] gi|219678608|gb|EED34957.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium NOR51-B] Length = 454 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 209/451 (46%), Positives = 292/451 (64%), Gaps = 17/451 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P++ FV+++GCQMN YDS RM+D+ S G E + AD+++LNTC IREKA EKV+ Sbjct: 5 TPKKLFVQTHGCQMNEYDSARMQDLLGESHGLEVTLDAEQADVLLLNTCSIREKAQEKVF 64 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 LGR ++LK ++ DL++ V GCVA EG EI +R+P V+++ GPQT +RLPE++E Sbjct: 65 HQLGRWKHLK----QKNPDLIIGVGGCVASQEGAEIGKRAPYVDLIFGPQTLHRLPEMIE 120 Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R G+ VVD + +KF+RL + G TAF++I EGC K+CTFCVVPYTRG Sbjct: 121 SRRDGEPMVVDVSFPEIEKFDRLP-----EPKVDGPTAFVSIMEGCSKYCTFCVVPYTRG 175 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E+SR + V+ E L + GV E+ LLGQNVNA+RG GE F+DLL + + G+ Sbjct: 176 EEVSRPVDDVIAEIAHLAERGVKEVNLLGQNVNAYRGLNHLGEVVDFADLLRLVDLVDGI 235 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP + SD +I + D+ L+ +LHLPVQSGSDRIL +M R HTA EY+ I Sbjct: 236 ERIRYTTSHPVEFSDAIIDCYADIPALVDHLHLPVQSGSDRILMAMKRGHTALEYKSKIR 295 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R +RP+I++SSDFI+GFPGETD +F TM L+D IG+ +FSF YS R GTP S++ + Sbjct: 296 ALRRIRPNISMSSDFIIGFPGETDAEFAETMKLIDDIGFDNSFSFIYSARPGTPASDLPD 355 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 E K +RL LQ ++ +Q + +DA VG VL+ K + G+L GR+ + V Sbjct: 356 NTPEATKKQRLQILQGRIAQQARAISDAMVGSRQRVLVTGIAKRDPGQLSGRTE--NNRV 413 Query: 440 LN---SKNHNIGDIIKVRITDVKISTLYGEL 467 +N + IG+ + V I D ++L G L Sbjct: 414 VNFCCTDTALIGEFVDVDIVDAYTNSLRGVL 444 >gi|205351955|ref|YP_002225756.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856135|ref|YP_002242786.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|229890644|sp|B5QWC1|MIAB_SALEP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890645|sp|B5R817|MIAB_SALG2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|205271736|emb|CAR36570.1| MiaB protein (putative tRNA-thiotransferase (or tRNA-methylthiotransferase)) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707938|emb|CAR32227.1| MiaB protein (putative tRNA-thiotransferase (or tRNA-methylthiotransferase)) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326626994|gb|EGE33337.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 474 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 201/448 (44%), Positives = 294/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG TF+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET+DDF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETNDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPEMIGKFVDVEITDVYPNSLRGKVV 440 >gi|319791713|ref|YP_004153353.1| tRNA-i(6)a37 thiotransferase enzyme miab [Variovorax paradoxus EPS] gi|315594176|gb|ADU35242.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Variovorax paradoxus EPS] Length = 455 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 206/449 (45%), Positives = 287/449 (63%), Gaps = 15/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ +QGYE ++D+ADLI+ NTC +REKA EKV+S Sbjct: 2 KKVFIKTFGCQMNEYDSDKMADVLNAAQGYEPTQNVDEADLILFNTCSVREKAQEKVFSD 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR+++LK +K G V GCVA EG I+ R+P V++V GPQT +RLPE+L +R Sbjct: 62 LGRVKHLKAKGVKIG------VGGCVASQEGAAIIARAPYVDIVFGPQTLHRLPEMLNDR 115 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G TAF++I EGC K+C++CVVPYTRG E Sbjct: 116 ERLNRPQVDISFPEIEKFDHLPPA-----RVEGATAFVSIMEGCSKYCSYCVVPYTRGEE 170 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 ++R L V+ E L D GV EITLLGQNVNA+RGK G E F+ L+ ++EI G+ Sbjct: 171 VNRPLDDVLVEIAGLADQGVREITLLGQNVNAYRGKMGDTAEIADFALLIEYVAEIPGIE 230 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP + + LI+A+ + L+ +LHLPVQ GSDRIL +M R +TA EY+ + + Sbjct: 231 RIRYTTSHPNEFTPRLIEAYAKVPQLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRK 290 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+A+SSDFIVGFPGETD+DF M L+D + +FSF +SPR GTP + + + Sbjct: 291 LRAIRPDLALSSDFIVGFPGETDEDFAKMMKLIDDCQFDNSFSFIFSPRPGTPAAALHDD 350 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440 VK RL LQ+ + F DA VG VL+E K+ +L+GR+ + V Sbjct: 351 TPHEVKLARLQTLQRVIDGNVRRFGDALVGSTQRVLVEGASRKDANELMGRTACNRVVNF 410 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 +G + +RIT TL GE+V Sbjct: 411 EGDARLVGQMTDLRITRSLAYTLRGEVVT 439 >gi|146308794|ref|YP_001189259.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas mendocina ymp] gi|145576995|gb|ABP86527.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas mendocina ymp] Length = 459 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 205/450 (45%), Positives = 291/450 (64%), Gaps = 17/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E ++AD+I+LNTC IREKA +KV+S Sbjct: 15 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTEKPEEADVILLNTCSIREKAQDKVFSQ 74 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + DL++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 75 LGRWRELKQA----NPDLVIGVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 130 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VD + +KF+RL R G +AF+++ EGC K+CTFCVVPYTRG E Sbjct: 131 RTTKTAQVDISFPEIEKFDRLP-----EPRVDGPSAFVSVMEGCSKYCTFCVVPYTRGEE 185 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L+ V+ E +L D GV E+TLLGQNVN +RG DG F++LL++++ + G+ R Sbjct: 186 VSRPLADVLLEITQLTDKGVKEVTLLGQNVNGYRGATPDGRIADFAELLHAVAALDGIER 245 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD +I AH ++ L+ YLHLPVQSGSDRIL +M R HTA EY+ I ++ Sbjct: 246 IRYTTSHPLEFSDAIIAAHAEIPQLVKYLHLPVQSGSDRILAAMKRNHTALEYKSRIRKL 305 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ PDI ISSDFIVGFPGET+ DF TM L++ +G+ +FSF YS R GTP +++++ Sbjct: 306 RAAVPDILISSDFIVGFPGETEKDFEQTMKLIEDVGFDFSFSFIYSSRPGTPAADLVDDT 365 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 + VK +RL LQ ++ + + VG + +L+ + K+ G L GR+ Q+ ++N Sbjct: 366 PDEVKKQRLAILQHRINQYGFENSRRMVGTVQRILVSDYSKKDPGMLQGRTE--QNRIVN 423 Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELV 468 + N IG + V I D +L G L+ Sbjct: 424 FRCDNPRLIGQFVDVHIDDALPHSLRGTLL 453 >gi|294637486|ref|ZP_06715772.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Edwardsiella tarda ATCC 23685] gi|291089318|gb|EFE21879.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Edwardsiella tarda ATCC 23685] Length = 474 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 203/447 (45%), Positives = 289/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S G E ++ +DAD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLGSTHGLELTDNAEDADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I R+ V+++ GPQT +RLPE++ERA Sbjct: 63 LGRWKMLKEAK----PDLIIGVGGCVASQEGEHIRERASFVDIIFGPQTLHRLPEMIERA 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG E Sbjct: 119 RGSHSPVVDVSFPEIEKFDRLP-----EPRAEGATAFVSIMEGCNKYCTYCVVPYTRGAE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E +L GV E+ LLGQNVNA+RG DG CTF++LL ++ I G+ R Sbjct: 174 VSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATFDGGICTFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + SD +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPIEFSDDIIAVYEDTPELVSFLHLPVQSGSDRILNLMKRTHTALEYKAIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF TM L+ + + ++SF +S R GTP ++M++ V Sbjct: 294 RKARPDIQISSDFIVGFPGETQQDFEQTMQLIADVDFDMSYSFIFSARPGTPAADMVDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + ++ G + +L+E ++ +L GR+ + V Sbjct: 354 PEEEKKQRLYILQERISQQAMRYSRRMQGTVQRILVEGTSRKNVMELSGRTENNRVVNFA 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + IG + V IT+V ++L G +V Sbjct: 414 GQPEMIGRFVDVEITEVLPNSLRGVVV 440 >gi|254482536|ref|ZP_05095775.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma proteobacterium HTCC2148] gi|214037227|gb|EEB77895.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma proteobacterium HTCC2148] Length = 443 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 204/447 (45%), Positives = 291/447 (65%), Gaps = 13/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS RM D+ S + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLYIKTHGCQMNEYDSARMRDLLEDSHDLVPTENPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR ++LK ++ DL++ V GCVA EGE I +R+P V++V GPQT +RLPE++E R Sbjct: 63 LGRWKHLK----QKNPDLIIGVGGCVASQEGEAIGKRAPYVDLVFGPQTLHRLPEMMEQR 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +VD + +KF+RL + G TAF++I EGC K+CTFCVVPYTRG E Sbjct: 119 GPGGTLIVDVSFPEIEKFDRLP-----EPKVDGPTAFVSIMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E L GV E+ LLGQNVNA+RG D E F++LL+ +++I G+ R Sbjct: 174 VSRPLDDVIAEIAHLAGKGVKEVNLLGQNVNAYRGDSHDCEIVDFAELLHYVAKIPGIER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI A+ D+ L+ +LHLPVQSGSD+IL +M R HTA EY+ I + Sbjct: 234 IRYTTSHPVEFSDALINAYADIPQLVSHLHLPVQSGSDKILAAMKRGHTALEYKSKIRHL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RPDI+ISSDFI+GFPGET+ DF TM L++ IG+ +FSF YS R GTP S++ + Sbjct: 294 RKIRPDISISSDFIIGFPGETEKDFADTMKLIEDIGFDVSFSFIYSARPGTPASDLPDAT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441 E+ K +RL LQ ++ + + VG +L+ K+ G+L GR+ ++V + Sbjct: 354 SEDTKKQRLQILQARINQNAQEISRRMVGSTQTILVTGVSRKDPGQLQGRTENNRAVNFS 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGEL 467 +H IG+ I+V I + ++L G L Sbjct: 414 CTDHELIGEFIQVEIIEALPNSLRGVL 440 >gi|229890679|sp|A4XYW1|MIAB_PSEMY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 447 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 205/450 (45%), Positives = 291/450 (64%), Gaps = 17/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E ++AD+I+LNTC IREKA +KV+S Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTEKPEEADVILLNTCSIREKAQDKVFSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + DL++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKQA----NPDLVIGVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VD + +KF+RL R G +AF+++ EGC K+CTFCVVPYTRG E Sbjct: 119 RTTKTAQVDISFPEIEKFDRLP-----EPRVDGPSAFVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L+ V+ E +L D GV E+TLLGQNVN +RG DG F++LL++++ + G+ R Sbjct: 174 VSRPLADVLLEITQLTDKGVKEVTLLGQNVNGYRGATPDGRIADFAELLHAVAALDGIER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD +I AH ++ L+ YLHLPVQSGSDRIL +M R HTA EY+ I ++ Sbjct: 234 IRYTTSHPLEFSDAIIAAHAEIPQLVKYLHLPVQSGSDRILAAMKRNHTALEYKSRIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ PDI ISSDFIVGFPGET+ DF TM L++ +G+ +FSF YS R GTP +++++ Sbjct: 294 RAAVPDILISSDFIVGFPGETEKDFEQTMKLIEDVGFDFSFSFIYSSRPGTPAADLVDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 + VK +RL LQ ++ + + VG + +L+ + K+ G L GR+ Q+ ++N Sbjct: 354 PDEVKKQRLAILQHRINQYGFENSRRMVGTVQRILVSDYSKKDPGMLQGRTE--QNRIVN 411 Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELV 468 + N IG + V I D +L G L+ Sbjct: 412 FRCDNPRLIGQFVDVHIDDALPHSLRGTLL 441 >gi|292493861|ref|YP_003529300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus halophilus Nc4] gi|291582456|gb|ADE16913.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosococcus halophilus Nc4] Length = 447 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/447 (44%), Positives = 293/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS RM D+ S G E + + A++++LNTC +REKA EKV+S Sbjct: 3 KKLYIKTHGCQMNEYDSTRMADVLRQSHGLELTSDPEQAEVLLLNTCSVREKAQEKVFSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R K +R +L++ V GCVA EGE I R+P V++V GPQT +RLP +L + Sbjct: 63 LGRWRQWKQAR----PELIIGVGGCVASQEGETIRARAPYVDLVFGPQTIHRLPAMLTQV 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D + +KF++L R G AF+++ EGC K+C+FCVVPYTRG E Sbjct: 119 SGNHQPVIDISFPEIEKFDKLP-----EPRAEGPMAFVSVMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR L V+ E L + GV E+TLLGQNVNA+RG +G+ + L+ ++ I+G+ R Sbjct: 174 ISRPLDDVIAEIVDLAEQGVREVTLLGQNVNAYRGPMGEGDIADLALLITYVASIEGIER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + SD LI+A ++ L+ +LHLPVQSGSDRIL M R HT EY+ + R+ Sbjct: 234 IRFTTSHPVEFSDSLIQAFAEVPELVSHLHLPVQSGSDRILSLMKRGHTVLEYKAKLRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R VRPDI+ISSDFI+G PGET+ DF+AT+ LVD++G+ +FSF YSPR GTP +++ ++V Sbjct: 294 RQVRPDISISSDFIIGLPGETEADFQATLALVDEVGFDHSFSFIYSPRPGTPAASLPDEV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 VK ERL LQ++LR +++ + V + +VL+E+ K+ L GR+ + V Sbjct: 354 PMAVKKERLGILQERLRASEMTISQGMVDTVQQVLVERSSKKDPAMLAGRTANNRVVNFP 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + IG + VRIT+ ++L G ++ Sbjct: 414 ATQGLIGKFVNVRITEALPNSLRGVVI 440 >gi|197284347|ref|YP_002150219.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Proteus mirabilis HI4320] gi|227358509|ref|ZP_03842834.1| 2-methylthioadenine synthase [Proteus mirabilis ATCC 29906] gi|229890603|sp|B4EV28|MIAB_PROMH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|194681834|emb|CAR41118.1| MiaB protein (methylthiolation of isopentenylated A37 derivatives in rRNA) [Proteus mirabilis HI4320] gi|227161220|gb|EEI46294.1| 2-methylthioadenine synthase [Proteus mirabilis ATCC 29906] Length = 476 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 196/447 (43%), Positives = 294/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ S GY+ + +DAD+++LNTC IREKA EKV+ Sbjct: 5 KKLYIKTWGCQMNEYDSSKMADLLESTHGYQLTDVAEDADILLLNTCSIREKAQEKVFHQ 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR +N K+++ D+++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ + Sbjct: 65 LGRWKNFKDNK----PDIIIGVGGCVASQEGEYIRQRAQCVDIIFGPQTLHRLPEMINQV 120 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K VVD + +KF+RL R G +AF++I EGC+K+C+FCVVPYTRG E Sbjct: 121 KGTKSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCSFCVVPYTRGEE 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG+ DG+ C+F++LL ++ I G+ R Sbjct: 176 VSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGETFDGQICSFAELLRLVAAIDGIDR 235 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 236 IRFTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTLMKRNHTALEYKSIIRKL 295 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGET DDF TM L+ + + +FSF YS R GTP +++ + V Sbjct: 296 RKARPDILISSDFIIGFPGETQDDFEKTMKLIADVNFDMSFSFIYSARPGTPAADLPDDV 355 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q ++++ A + + +L+E ++ +L GR+ + V Sbjct: 356 SEEEKKQRLYLLQQRINQQAMNYSRAMLNSVQRILVEGPSRKNVMELSGRTENNRVVNFE 415 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G++V Sbjct: 416 GTPDMIGKFVDVEIVDVYANSLRGKVV 442 >gi|190573591|ref|YP_001971436.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Stenotrophomonas maltophilia K279a] gi|229891009|sp|B2FJ92|MIAB_STRMK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|190011513|emb|CAQ45131.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 472 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/447 (45%), Positives = 289/447 (64%), Gaps = 12/447 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++K++GCQMN YDS +M D+ S G E ++ +DAD+I++NTC IREKA EKV+S L Sbjct: 34 KLYIKTHGCQMNEYDSAKMADVLAASDGLELTDTPEDADVILVNTCSIREKAQEKVFSQL 93 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G + LKN +G ++++ V GCVA EGE I++R+P V++V GPQT +RLPEL+ R Sbjct: 94 GVWKGLKN----KGREVIIGVGGCVASQEGEAIIKRAPFVDLVFGPQTLHRLPELIRARR 149 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 KR VD + +KF+RL R G +AF++I EGC K+C+FCVVPYTRG E+ Sbjct: 150 EQKRPQVDISFPEIEKFDRLP-----EPRAEGASAFVSIMEGCSKYCSFCVVPYTRGTEV 204 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR VV E +L GV EI LLGQNVNA+RG DGE L+ +++EI G+ R+ Sbjct: 205 SRPFEDVVVEVAQLAAQGVREINLLGQNVNAYRGPYGDGEFADLGLLIRTIAEIDGVGRI 264 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP + SD LI A D+ L +LHLPVQ+GSDR+L +M R +TA E++ I ++R Sbjct: 265 RFTTSHPLEFSDSLIDAFRDVPQLANFLHLPVQAGSDRVLSAMKRGYTALEFKSKIRKLR 324 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +VRPDI+ISSDFIVGFPGETD DF TM L++ IG+ +FSF YS R GTP +++ + + Sbjct: 325 AVRPDISISSDFIVGFPGETDADFEKTMKLIEDIGFDHSFSFIYSRRPGTPAADLEDTIS 384 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442 + K RL LQ+++ ++ VG + VL+E K +L G++ ++SV + Sbjct: 385 DAEKHARLSRLQERINAHAAGISEKMVGTVQTVLVEGPSRKNPNELTGKTENMRSVNFPA 444 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 IG + V IT+ ++L +V Sbjct: 445 PARLIGQFVDVVITEALTNSLRARVVA 471 >gi|120609569|ref|YP_969247.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acidovorax citrulli AAC00-1] gi|229890406|sp|A1TKI5|MIAB_ACIAC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|120588033|gb|ABM31473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax citrulli AAC00-1] Length = 449 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 206/449 (45%), Positives = 290/449 (64%), Gaps = 15/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ FVK++GCQMN YDS +M D+ +QGYE +++ADLI+ NTC +REKA EKV+S Sbjct: 3 KKVFVKTFGCQMNEYDSDKMVDVLNAAQGYEPTQDVEEADLILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGRI++LK +K G V GCVA EG+EI++R+P V+VV GPQT +RLPELL +R Sbjct: 63 LGRIKHLKARGVKIG------VGGCVASQEGDEIIKRAPYVDVVFGPQTLHRLPELLAQR 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 117 EALARPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L D GV E+TLLGQNVNA+ GK G E F+ LL +++I G+ Sbjct: 172 VSRPFDDVLVEVAGLADQGVKEVTLLGQNVNAYLGKMGGTAEVADFALLLEYVADITGIE 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + + LI A+ + L+ +LHLPVQ GSDRIL +M R +TA EY+ I + Sbjct: 232 RIRFTTSHPNEFTQRLIDAYARIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTIRK 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+A+SSDFIVGFPGET+DDF M L+D I + +FSF +SPR GTP +++ + Sbjct: 292 LRAIRPDLAMSSDFIVGFPGETEDDFGKMMKLIDDIHFDNSFSFIFSPRPGTPAASLHDD 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440 VK RL LQ + S +++ VG + +L+E K G +L+GR+ + V Sbjct: 352 TPHEVKLRRLQELQAVINANIKSISESRVGTVQRILVEGASKRDGSELMGRTECNRVVNF 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 +G ++ V IT+ K TL GE+V Sbjct: 412 AGHPRLVGQMVDVTITEAKAYTLRGEVVT 440 >gi|290476182|ref|YP_003469082.1| tRNA methylthiolation protein [Xenorhabdus bovienii SS-2004] gi|289175515|emb|CBJ82318.1| involved in methylthiolation of isopentenylated A37 derivatives in tRNA, Fe-S protein [Xenorhabdus bovienii SS-2004] Length = 476 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 195/447 (43%), Positives = 290/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 5 KKLYIKTWGCQMNEYDSSKMADLLETTHGYQLTDVAEEADILLLNTCSIREKAQEKVFHQ 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + ++++ V GCVA EG+ I +R+P V+++ GPQT +RLPE++ Sbjct: 65 LGRWKGLKD----KNPEIIIGVGGCVASQEGDFIRQRAPSVDIIFGPQTLHRLPEMINHV 120 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + +VD + +KF+R+ R G +AF++I EGC+K+CTFCVVPYTRG E Sbjct: 121 KGTHSPIVDISFPEIEKFDRMP-----EPRAEGPSAFVSIMEGCNKYCTFCVVPYTRGEE 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV ++ LLGQNVNA+RG DG+ CTF++LL ++ I G+ R Sbjct: 176 VSRPCDDILFEIAQLAAQGVRDVNLLGQNVNAYRGAAFDGDICTFAELLRLVAAIDGIDR 235 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ YLHLPVQSGSDRIL M R HTA EY+ II R+ Sbjct: 236 IRFTTSHPIEFTDDIIAVYEDTPELVSYLHLPVQSGSDRILTQMKRAHTALEYKGIIRRL 295 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGET DDF TM L+ + + +FSF YS R GTP +++ + V Sbjct: 296 RKARPDILISSDFIIGFPGETQDDFEKTMQLIADVNFDMSFSFIYSARPGTPAADLPDDV 355 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q +SF+ A VG +L+E ++ +L GR+ + V Sbjct: 356 SEEEKKQRLYLLQQRINQQAMSFSRAMVGSTQRILVEGTSRKNIMELSGRTENNRVVNFE 415 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + I DV ++L G+++ Sbjct: 416 GTPDMIGKFVDAEIVDVYANSLRGKVI 442 >gi|229890673|sp|A9MKB7|MIAB_SALAR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 474 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG TF+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET DDF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETSDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGSTQRILVEGTSRKNIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPEMIGKFVDVEITDVYPNSLRGKVV 440 >gi|161504166|ref|YP_001571278.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865513|gb|ABX22136.1| hypothetical protein SARI_02272 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 488 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 17 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 76 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 77 LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 132 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 133 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 186 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG TF+DLL ++ I G+ Sbjct: 187 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 246 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 247 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 306 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET DDF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 307 LRAARPDIQISSDFIVGFPGETSDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 366 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 367 VPEEEKKQRLYILQERINQQAMAWSRRMLGSTQRILVEGTSRKNIMELSGRTENNRVVNF 426 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 427 EGTPEMIGKFVDVEITDVYPNSLRGKVV 454 >gi|16759622|ref|NP_455239.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142605|ref|NP_805947.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62179268|ref|YP_215685.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615109|ref|YP_001589074.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|25305454|pir||AC0584 MiaB protein (probable tRNA-thiotransferase (or tRNA-methylthiotransferase)) miaB [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501914|emb|CAD05141.1| MiaB protein (putative tRNA-thiotransferase (or tRNA-methylthiotransferase)) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138236|gb|AAO69807.1| MiaB protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62126901|gb|AAX64604.1| methylthiolation of isopentenylated A37 derivatives in rRNA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364473|gb|ABX68241.1| hypothetical protein SPAB_02876 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|320084943|emb|CBY94732.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB tRNA-i(6)A37 methylthiotransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322713735|gb|EFZ05306.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 488 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 17 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 76 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 77 LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 132 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 133 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 186 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG TF+DLL ++ I G+ Sbjct: 187 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 246 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 247 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 306 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET DDF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 307 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 366 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 367 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVNF 426 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 427 EGTPEMIGKFVDVEITDVYPNSLRGKVV 454 >gi|37525279|ref|NP_928623.1| tRNA-methylthiotransferase MiaB protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|81416679|sp|Q7MB63|MIAB_PHOLL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|36784706|emb|CAE13606.1| tRNA-methylthiotransferase MiaB protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 476 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 296/448 (66%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ S GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 5 KKLYIKTWGCQMNEYDSSKMADLLESTHGYQLTDVAEEADILLLNTCSIREKAQEKVFHQ 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR +NLK++ DL++ V GCVA EG+ I +R+ V+++ GPQT +RLPE++ + Sbjct: 65 LGRWKNLKDT----NPDLIIGVGGCVASQEGDFIRQRAQCVDIIFGPQTLHRLPEMINQV 120 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R VVD + +KF+RL R G +AF++I EGC+K+CTFCVVPYTRG Sbjct: 121 K-GTRSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTFCVVPYTRGE 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR V+ E +L GV E+ LLGQNVNA+RG DG+ C+F++L+ ++ I G+ Sbjct: 175 EVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELIRLVAAIDGID 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 235 RIRFTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTLMKRAHTALEYKSIIRK 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPDI ISSDFI+GFPGET DDF TM L+ + + ++SF YS R GTP +++ + Sbjct: 295 LRKARPDILISSDFIIGFPGETQDDFEKTMKLIADVNFDMSYSFIYSARPGTPAADLPDD 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q +S++ A +G + +L+E ++ +L GR+ + V Sbjct: 355 VSEEEKKQRLYLLQQRINQQAMSYSRAMLGSVQRILVEGTSRKNVMELSGRTENNRVVNF 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG + V I DV ++L G+++ Sbjct: 415 EGQPDMIGKFVDVEIVDVYANSLRGKVI 442 >gi|16764047|ref|NP_459662.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167550789|ref|ZP_02344545.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990681|ref|ZP_02571781.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231688|ref|ZP_02656746.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236659|ref|ZP_02661717.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240521|ref|ZP_02665453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264394|ref|ZP_02686367.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465849|ref|ZP_02699731.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820202|ref|ZP_02832202.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446753|ref|YP_002039914.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450672|ref|YP_002044705.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471594|ref|ZP_03077578.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734184|ref|YP_002113781.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248340|ref|YP_002145647.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263845|ref|ZP_03163919.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245491|ref|YP_002214659.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200391054|ref|ZP_03217665.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930519|ref|ZP_03221449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213425074|ref|ZP_03357824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213583025|ref|ZP_03364851.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213647865|ref|ZP_03377918.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213859100|ref|ZP_03385071.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238911620|ref|ZP_04655457.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825599|ref|ZP_06544785.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|81549773|sp|Q9RCI2|MIAB_SALTY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890639|sp|B5EZB2|MIAB_SALA4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890643|sp|B5FNB2|MIAB_SALDC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890646|sp|B4TB74|MIAB_SALHS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890647|sp|B4SYN0|MIAB_SALNS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890660|sp|B4TPZ0|MIAB_SALSV RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890665|sp|Q8Z8G5|MIAB_SALTI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890668|sp|A9MUH8|MIAB_SALPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890674|sp|Q57RQ7|MIAB_SALCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|6523483|emb|CAB62263.1| MiaB protein [Salmonella typhimurium] gi|16419184|gb|AAL19621.1| methylthiolation of isopentenylated A37 derivatives in rRNA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194405416|gb|ACF65638.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408976|gb|ACF69195.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457958|gb|EDX46797.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709686|gb|ACF88907.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632043|gb|EDX50563.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197212043|gb|ACH49440.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242100|gb|EDY24720.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290335|gb|EDY29691.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940007|gb|ACH77340.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603499|gb|EDZ02045.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320453|gb|EDZ05656.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205324195|gb|EDZ12034.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330871|gb|EDZ17635.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334151|gb|EDZ20915.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339926|gb|EDZ26690.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343227|gb|EDZ29991.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347114|gb|EDZ33745.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261245942|emb|CBG23744.1| MiaB protein (putative tRNA-thiotransferase (or tRNA-methylthiotransferase)) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992407|gb|ACY87292.1| rRNA modification protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157270|emb|CBW16758.1| MiaB protein (putative tRNA-thiotransferase (or tRNA-methylthiotransferase)) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911702|dbj|BAJ35676.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226251|gb|EFX51302.1| tRNA-i(6)A37 methylthiotransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613204|gb|EFY10147.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621272|gb|EFY18129.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623692|gb|EFY20530.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628964|gb|EFY25743.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631686|gb|EFY28440.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637578|gb|EFY34280.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641918|gb|EFY38548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646762|gb|EFY43268.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651463|gb|EFY47843.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653086|gb|EFY49420.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658807|gb|EFY55062.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664924|gb|EFY61117.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668926|gb|EFY65078.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670568|gb|EFY66701.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675309|gb|EFY71385.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682220|gb|EFY78245.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684951|gb|EFY80948.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323128987|gb|ADX16417.1| rRNA modification protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193991|gb|EFZ79193.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197917|gb|EFZ83039.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202036|gb|EFZ87096.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207169|gb|EFZ92122.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210924|gb|EFZ95787.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214304|gb|EFZ99055.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219291|gb|EGA03782.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225498|gb|EGA09728.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231057|gb|EGA15173.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234111|gb|EGA18200.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238194|gb|EGA22252.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242572|gb|EGA26596.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248451|gb|EGA32385.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251334|gb|EGA35206.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259262|gb|EGA42905.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262137|gb|EGA45699.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264851|gb|EGA48352.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272312|gb|EGA55719.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622414|gb|EGE28759.1| rRNA modification protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332987614|gb|AEF06597.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 474 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG TF+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET DDF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPEMIGKFVDVEITDVYPNSLRGKVV 440 >gi|229890667|sp|Q5PLT0|MIAB_SALPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890669|sp|B5BCD1|MIAB_SALPK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 474 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTSHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG TF+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET DDF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPEMIGKFVDVEITDVYPNSLRGKVV 440 >gi|289165670|ref|YP_003455808.1| isopentenyl-adenosine A37 tRNA methylthiolase [Legionella longbeachae NSW150] gi|288858843|emb|CBJ12757.1| isopentenyl-adenosine A37 tRNA methylthiolase [Legionella longbeachae NSW150] Length = 447 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 204/448 (45%), Positives = 288/448 (64%), Gaps = 12/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K+ GCQMN YDS +M D+ S G + + ++DAD+I+LNTC IREKA EKV+S Sbjct: 3 KKLYIKTNGCQMNEYDSSKMADVLLQSHGLVKTDQVEDADVILLNTCSIREKAQEKVFSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LG+ R K + +++ V GCVA EG +I++R+P V++V GPQT +RLPELL ER Sbjct: 63 LGQWREYK----AKNPHVVIGVGGCVASQEGADIIKRAPFVDLVFGPQTLHRLPELLNER 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K VVD + +KF+ L R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 MEKKKPVVDISFPEIEKFDHLPA-----PRAEGPTAFVSIMEGCSKYCSFCVVPYTRGTE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR V+ E +L GV EI LLGQNVN +RG +G+ + L++ L+ I+G+ R Sbjct: 174 ISRPFDDVLAECYQLATQGVREINLLGQNVNDYRGTMENGDIADLALLIHYLAAIEGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP SD LI A+ ++ L +LHLPVQSGSDRIL M R +TA E++ I ++ Sbjct: 234 IRFTTSHPLAFSDNLINAYAEVPELANHLHLPVQSGSDRILGLMKRGYTALEFKSKIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RPDI +S+D IVGFPGETD DF+ TMDLV +IG+ +FSF YSPR GTP +N+ + Sbjct: 294 RKIRPDIRLSTDIIVGFPGETDKDFQDTMDLVHEIGFDTSFSFIYSPRPGTPAANLPDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441 VK +RL LQ +L Q ++ + VG I ++L+ H K+ +L GR+ + V + Sbjct: 354 PLEVKKQRLQILQNRLLLQASRYSQSMVGTIQKILVTGHSKKNSQQLSGRTECNRVVNFD 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469 H IG + +I+D ++L G L+ Sbjct: 414 GPAHLIGQFVDTQISDALPNSLRGRLIA 441 >gi|221124262|ref|XP_002159653.1| PREDICTED: similar to CDK5 regulatory subunit associated protein 1 [Hydra magnipapillata] gi|260220064|emb|CBA27228.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Curvibacter putative symbiont of Hydra magnipapillata] Length = 445 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/449 (44%), Positives = 286/449 (63%), Gaps = 15/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ +QGYE + ++ ADLI+ NTC +REKA EKV+S Sbjct: 3 KKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTDDVEQADLILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGRI++LK ++ G V GCVA EG EI++R+P V+VV GPQT +RLPE+L R Sbjct: 63 LGRIKHLKAKGVQIG------VGGCVASQEGAEIIKRAPYVDVVFGPQTLHRLPEMLNAR 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K VD + +KF+ L + G +AF++I EGC K+C++CVVPYTRG E Sbjct: 117 KALDKPQVDISFPEIEKFDHLPPA-----KVDGASAFVSIMEGCSKYCSYCVVPYTRGTE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 I+R V+ E L D GV E+ LLGQNVNAWR G GE F+ LL +S+I G+ Sbjct: 172 INRPFEDVLVEIAGLADQGVKEVNLLGQNVNAWRNAMGDSGEMADFATLLEYVSDIPGIE 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP + + LI A+ L L+ +LHLPVQ GSD+IL +M R +TA EY+ I + Sbjct: 232 RIRYTTSHPNEFTPSLIAAYEKLPKLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTIRK 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD++ISSDFIVGFPGETD+D M L+ IG+ +FSF +SPR GTP +N+ + Sbjct: 292 LRAIRPDMSISSDFIVGFPGETDEDHAKMMKLIHDIGFDNSFSFIFSPRPGTPAANLHDD 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 VK RL LQ + + ++ +G + +L+E K + G+L+GR+ + V Sbjct: 352 TPHEVKLARLQELQAAINANIATISNQRLGTVQRILVEGGSKRDNGELMGRTECNRVVNF 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 +G ++ V IT+ + TL GE++ Sbjct: 412 AGNPRLVGQLVDVTITETRSYTLRGEVLT 440 >gi|285018048|ref|YP_003375759.1| 2-methylthioadenine synthetase [Xanthomonas albilineans GPE PC73] gi|283473266|emb|CBA15771.1| putative 2-methylthioadenine synthetase protein [Xanthomonas albilineans] Length = 470 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 207/454 (45%), Positives = 296/454 (65%), Gaps = 20/454 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++K++GCQMN YDS +M D+ + +G E ++ ++AD++++NTC IREKA EKV+S L Sbjct: 24 KLYIKTHGCQMNEYDSAKMADVLAAAEGLELTDNPEEADVVLVNTCSIREKAQEKVFSQL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + LK G +++ V GCVA EGE I++R+P V++V GPQT +RLPEL+ RAR Sbjct: 84 GRWKALKAG----GKQVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELI-RAR 138 Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ VD + +KF+RL R G +AF++I EGC K+C+FCVVPYTRG E Sbjct: 139 RASGQSQVDISFPEVEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGEE 193 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---GEKCTFSDL---LYSLSE 256 ISR V+ E +L GV EI LLGQNVNA+RG D GE +DL + S+++ Sbjct: 194 ISRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGPYADADVGEDPQHADLGLLIRSIAQ 253 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I+G+ R+R+TTSHP + SD L+ A+ D+ L YLHLPVQ+GSDRIL +M R +TA E++ Sbjct: 254 IEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEFK 313 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 Q I ++R+VRPDIAISSDFIVGFPGETD DF TM L++ +G+ Q+FSF YS R GTP + Sbjct: 314 QKIRKLRAVRPDIAISSDFIVGFPGETDADFDKTMRLIEDVGFDQSFSFIYSRRPGTPAA 373 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWL 435 ++ + E VK RL LQ + + + +G + VL+E K+ +L G++ + Sbjct: 374 DLEDDTPEAVKHARLTRLQAHINAHAQQISRSMIGSVQTVLVEGPSKKNPAELTGKTENM 433 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 +SV IG ++V IT+ ++L G +V Sbjct: 434 RSVNFPGHPRLIGQFVEVTITEALSNSLRGRVVA 467 >gi|238758019|ref|ZP_04619200.1| hypothetical protein yaldo0001_8970 [Yersinia aldovae ATCC 35236] gi|238703773|gb|EEP96309.1| hypothetical protein yaldo0001_8970 [Yersinia aldovae ATCC 35236] Length = 482 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/450 (44%), Positives = 288/450 (64%), Gaps = 12/450 (2%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKV 80 ++ ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV Sbjct: 8 LMTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTAIPEEADLLLLNTCSIREKAQEKV 67 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 +S LG + LK ++ +L++ V GCVA EGE + R+P V+V+ GPQT +RLPE++ Sbjct: 68 FSLLGHWKLLK----EKNPNLIIGVGGCVASQEGEHLRLRAPCVDVIFGPQTLHRLPEMI 123 Query: 141 ERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTR Sbjct: 124 NHVQGTHSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTR 178 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E+SR ++ E +L GV E+ LLGQNVNA+RG +G+ C+F++LL ++ I G Sbjct: 179 GEEVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYEGDTCSFAELLRLVAAIDG 238 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II Sbjct: 239 IDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAII 298 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R RPDI ISSDFI+GFPGET DF TM LV IG+ ++SF YSPR GTP + + Sbjct: 299 RKLRQARPDIQISSDFIIGFPGETQQDFEQTMKLVADIGFDTSYSFIYSPRPGTPAAELP 358 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438 + V E K +RL LQ+++ +Q + + VG + +L+E ++ +L GR+ + V Sbjct: 359 DDVSEEEKKQRLHILQQRITQQAMGISREMVGTVQRILVESTSRKNVMELAGRTENNRVV 418 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +G + V I DV S+L G L+ Sbjct: 419 NFAGSPELMGKFVDVEIVDVYASSLRGALL 448 >gi|122879210|ref|YP_201405.6| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|229891224|sp|Q5GZ51|MIAB_XANOR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 484 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 207/463 (44%), Positives = 300/463 (64%), Gaps = 19/463 (4%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHI 72 V++ +V + ++K++GCQMN YDS +M D+ S+G E ++ ++AD++++NTC I Sbjct: 25 VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 84 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 REKA EKV+S LGR + LK G +++ V GCVA EGE I++R+P V++V GPQT Sbjct: 85 REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 140 Query: 133 YYRLPELLERAR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 +RLPEL+ RAR GK VD + +KF+RL R G +AF++I EGC K+C Sbjct: 141 LHRLPELI-RARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYC 194 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLD-GEKCTFS 248 +FCVVPYTRG E+SR V+ E +L GV EI LLGQNVNA+RG G D G+ ++ Sbjct: 195 SFCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDPAQYA 254 Query: 249 DL---LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 DL + ++++I+G+ R+R+TTSHP + SD L+ A+ D+ L YLHLPVQ+GSDRIL + Sbjct: 255 DLGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSA 314 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R +TA E++ I ++R+VRPDI+ISSDFIVGFPGET+ DF TM L++ +G+ Q+FSF Sbjct: 315 MKRGYTALEFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSF 374 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KE 424 YS R GTP S++ + E VK RL LQ + S + + VG + VL+E ++ Sbjct: 375 VYSRRPGTPASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRD 434 Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 +L G+S ++ V IG + V IT+ ++L G + Sbjct: 435 PNELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477 >gi|241764105|ref|ZP_04762142.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax delafieldii 2AN] gi|241366569|gb|EER61057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax delafieldii 2AN] Length = 447 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 206/449 (45%), Positives = 292/449 (65%), Gaps = 15/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ +QGYE ++D+ADLI+ NTC +REKA EKV+S Sbjct: 3 KKVFIKTFGCQMNEYDSDKMVDVLGAAQGYEPTQNVDEADLILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGRI++LK +K G V GCVA EG EI++R+P V+VV GPQT +RLPE+L +R Sbjct: 63 LGRIKHLKARGVKIG------VGGCVASQEGAEIIKRAPYVDVVFGPQTLHRLPEMLNQR 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 117 ERMDKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L D GV EITLLGQNVNA+ GK G E F+ LL +S+I G+ Sbjct: 172 VSRPFDDVLVEVAGLADQGVKEITLLGQNVNAYLGKMGGTTEIADFALLLEYVSDIPGIE 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP + + LI+A+ L L +LHLPVQ GSDRIL +M R +TA EY+ + + Sbjct: 232 RIRYTTSHPNEFTPRLIEAYVKLPKLASHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRK 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+A+SSDFIVGFPGE++DDF M L+D I + +FSF +SPR GTP + + + Sbjct: 292 LRAIRPDLAMSSDFIVGFPGESEDDFNKMMKLIDDIHFDNSFSFIFSPRPGTPAAGLHDD 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 +VK RL LQ + S +++ VG + +L+E K + +L+GR+ + V Sbjct: 352 TPHDVKLRRLQHLQSVINANIKSISESRVGTVQRILVEGASKRDSTELMGRTECNRVVNF 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 + +G ++ V IT+ K TL G+++ Sbjct: 412 VGQPRLVGQMVDVTITEAKAYTLRGKVLT 440 >gi|304413678|ref|ZP_07395122.1| 2-methylthioadenine synthetase [Candidatus Regiella insecticola LSR1] gi|304283769|gb|EFL92163.1| 2-methylthioadenine synthetase [Candidatus Regiella insecticola LSR1] Length = 475 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/445 (45%), Positives = 288/445 (64%), Gaps = 14/445 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ ++ADL++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLAKTHGYQLTEVPEEADLLLLNTCSIREKAQEKVFHL 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+S +LL+ V GCVA EGE I +R+P V+++ GPQT +RLPE++ + Sbjct: 63 LGRWKLLKDS----NPNLLIGVGGCVASQEGENIRQRAPCVDIIFGPQTLHRLPEMINQV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R VVD + +KF+ L R G +AF++I EGC+K+CTFCVVPYTRG Sbjct: 119 Q-GSRSAVVDISFPEIEKFDCLP-----EPRANGPSAFVSIMEGCNKYCTFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L + V E+ LLGQNVNA+RG DG C+F++LL ++ I G+ Sbjct: 173 EVSRPCDDILFEIAQLAEQNVREVNLLGQNVNAYRGATYDGNICSFAELLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +IK + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RVRFTTSHPIEFTDDIIKVYEDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPDI ISSDFIVGFPGET DDF TM L+ ++ + ++SF YS R GTP +++ + Sbjct: 293 LRKARPDIQISSDFIVGFPGETQDDFEHTMKLIAEVNFDTSYSFIYSSRPGTPAADLPDN 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q + F+ A VG I VL+E ++ +L GR+ + V Sbjct: 353 VSEEEKKQRLHILQQRISQQAMHFSRAMVGTIQRVLVEGPSRKNLMELAGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465 IG + V I V S+L G Sbjct: 413 EGSPDMIGKFVDVEIVSVYASSLRG 437 >gi|165976746|ref|YP_001652339.1| bifunctional enzyme involved in thiolation andmethylation of tRNA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876847|gb|ABY69895.1| bifunctional enzyme involved in thiolation andmethylation of tRNA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 463 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/436 (46%), Positives = 288/436 (66%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ S G E + ++AD+++LNTC IREKA EKV+S LGR +N K Sbjct: 1 MNEYDSSKMADLLNSTHGLELTDKPEEADVLLLNTCSIREKAQEKVFSQLGRWKNWK--- 57 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153 K+ DL++ V GCVA EGE I R+P V++V GPQT +RLPE++ + R G R +VD Sbjct: 58 -KDKPDLIIGVGGCVASQEGEHIRDRAPFVDIVFGPQTLHRLPEMINKIRGGDRAIVDIS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+RL R G TAF++I EGC+K+C+FCVVPYTRG E+SR + V+ E Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L + GV E+ LLGQNVNA+RG+ DG CTF++LL ++ I G+ R+RYTTSHP + Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRVRYTTSHPIEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D +I+ + D L+ +LHLP+QSG+DR+L M R HTA EY+ II ++R VRP+I ISS Sbjct: 232 TDDIIEVYRDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLREVRPNIQISS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFIVGFPGET +DF TM +++++ + +FSF YS R GTP +++ + + E K RL Sbjct: 292 DFIVGFPGETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDISEEEKKARLAR 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ+++ Q + F+ A +G VL+E K+ +L GR+ + V IG + Sbjct: 352 LQQRINHQAMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQGTPDMIGKFVD 411 Query: 453 VRITDVKISTLYGELV 468 ++ITDV ++L GE+V Sbjct: 412 IKITDVYTNSLRGEVV 427 >gi|56414201|ref|YP_151276.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363125|ref|YP_002142762.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128458|gb|AAV77964.1| MiaB protein (putative tRNA-thiotransferase (or tRNA-methylthiotransferase)) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094602|emb|CAR60123.1| MiaB protein (putative tRNA-thiotransferase (or tRNA-methylthiotransferase)) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 488 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 17 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 76 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 77 LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTSHRLPEMINSV 132 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 133 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 186 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG TF+DLL ++ I G+ Sbjct: 187 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 246 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 247 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 306 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET DDF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 307 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 366 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 367 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVNF 426 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 427 EGTPEMIGKFVDVEITDVYPNSLRGKVV 454 >gi|291616694|ref|YP_003519436.1| YleA [Pantoea ananatis LMG 20103] gi|291151724|gb|ADD76308.1| YleA [Pantoea ananatis LMG 20103] gi|327393120|dbj|BAK10542.1| tRNA-I(6)A37-MiaB YleA [Pantoea ananatis AJ13355] Length = 478 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/447 (44%), Positives = 288/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY ++AD+++LNTC IREKA EKV+ Sbjct: 7 KKLHIKTWGCQMNEYDSSKMSDLLNSTHGYTLTEEAEEADILLLNTCSIREKAQEKVFHQ 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK + DL++ V GCVA EG+ I +R+P V++V GPQT +RLPE++ Sbjct: 67 LGRWKKLK----ERNPDLIIGVGGCVASQEGDHIRQRAPCVDIVFGPQTLHRLPEMINTV 122 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 123 RGSKSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 177 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ CTF++LL ++ I G+ R Sbjct: 178 VSRPSDDILLEIAQLAAQGVREVNLLGQNVNAYRGATFDGDVCTFAELLRLVAAIDGIDR 237 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I+ + D L+ +LHLPVQSG+DRIL M R HTA EY+ II ++ Sbjct: 238 IRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 297 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPDI ISSDFI+GFPGET DF TM L+ I + ++SF YS R GTP +++ + V Sbjct: 298 RAARPDIEISSDFIIGFPGETQQDFEQTMKLIGDINFDMSYSFIYSARPGTPAADLPDDV 357 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K +RL LQ+++ +Q ++ + +G + +L+E ++ +L GR+ + V Sbjct: 358 SEDEKKQRLYILQERINQQAMAISRRMMGSVQRILVEGISRKNVMELTGRTENNRVVNFE 417 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG V I DV ++L G+LV Sbjct: 418 GPVEMIGKFADVEIVDVYTNSLRGKLV 444 >gi|226330999|ref|ZP_03806517.1| hypothetical protein PROPEN_04929 [Proteus penneri ATCC 35198] gi|225201794|gb|EEG84148.1| hypothetical protein PROPEN_04929 [Proteus penneri ATCC 35198] Length = 476 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 196/447 (43%), Positives = 293/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ S GY+ + +DAD+++LNTC IREKA EKV+ Sbjct: 5 KKLYIKTWGCQMNEYDSSKMADLLESTHGYQLTDVAEDADILLLNTCSIREKAQEKVFHQ 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + K+++ D+++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ + Sbjct: 65 LGRWKYFKDNK----PDIIIGVGGCVASQEGEYIRQRAQCVDIIFGPQTLHRLPEMINQV 120 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K VVD + +KF+RL R G +AF++I EGC+K+C+FCVVPYTRG E Sbjct: 121 KGTKSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCSFCVVPYTRGEE 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E +L GV E+ LLGQNVNA+RG DG+ C+F++L+ ++ I G+ R Sbjct: 176 VSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATFDGQICSFAELIRLVAAIDGIDR 235 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D ++ + D L+ YLHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 236 IRFTTSHPIEFTDDIVAVYEDTPELVSYLHLPVQSGSDRILTLMKRNHTALEYKSIIRKL 295 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGET DDF TM L+ + + +FSF YS R GTP +++ + V Sbjct: 296 RKARPDILISSDFIIGFPGETQDDFEKTMQLIADVNFDMSFSFIYSARPGTPAADLPDDV 355 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K +RL LQ+++ +Q ++F+ A + + +L+E ++ +L GR+ + V Sbjct: 356 SEDEKKQRLYLLQQRINQQAMNFSRAMLNSVQRILVEGPSRKNVMELSGRTENNRVVNFE 415 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G++V Sbjct: 416 GTPDMIGKFVDVEIVDVYANSLRGKVV 442 >gi|326315625|ref|YP_004233297.1| RNA modification enzyme, MiaB family [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372461|gb|ADX44730.1| RNA modification enzyme, MiaB family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 449 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 205/449 (45%), Positives = 289/449 (64%), Gaps = 15/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ FVK++GCQMN YDS +M D+ + QGYE + ++ADLI+ NTC +REKA EKV+S Sbjct: 3 KKVFVKTFGCQMNEYDSDKMVDVLHAAQGYEPTQNAEEADLILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR ++LK +K G V GCVA EG+EI++R+P V+VV GPQT +RLPELL +R Sbjct: 63 LGRFKHLKARGVKIG------VGGCVASQEGDEIIKRAPYVDVVFGPQTLHRLPELLAQR 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 117 EALARPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L D GV E+TLLGQNVNA+ GK G E F+ LL +++I G+ Sbjct: 172 VSRPFDDVLVEVAGLADQGVKEVTLLGQNVNAYLGKMGGTAEVADFALLLEYVADIPGIE 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + + LI A+ + L+ +LHLPVQ GSDRIL +M R +TA EY+ I + Sbjct: 232 RIRFTTSHPNEFTPRLIDAYARIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTIRK 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+A+SSDFIVGFPGET+DDF M L+D I + +FSF +SPR GTP +++ + Sbjct: 292 LRAIRPDLAMSSDFIVGFPGETEDDFGKMMKLIDDIHFDNSFSFIFSPRPGTPAASLHDD 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440 VK RL LQ + S +++ VG + +L+E K G +L+GR+ + V Sbjct: 352 TPHEVKLRRLQELQAVINANIKSISESRVGTVQRILVEGASKRDGSELMGRTECNRVVNF 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 +G ++ V IT+ K TL GE+V Sbjct: 412 AGHPRLVGQMVDVTITEAKAYTLRGEVVT 440 >gi|215485694|ref|YP_002328125.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli O127:H6 str. E2348/69] gi|312965102|ref|ZP_07779339.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 2362-75] gi|331656683|ref|ZP_08357645.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA206] gi|215263766|emb|CAS08102.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli O127:H6 str. E2348/69] gi|281177809|dbj|BAI54139.1| conserved hypothetical protein [Escherichia coli SE15] gi|312290193|gb|EFR18076.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 2362-75] gi|315299188|gb|EFU58442.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 16-3] gi|331054931|gb|EGI26940.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA206] Length = 474 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG TF+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET DDF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440 >gi|170025226|ref|YP_001721731.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia pseudotuberculosis YPIII] gi|169751760|gb|ACA69278.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Yersinia pseudotuberculosis YPIII] Length = 509 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 38 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 97 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ + LK ++ L++ V GCVA EGE++ +R+P V+V+ GPQT +RLPE++ Sbjct: 98 LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 153 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 154 QETNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 208 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 209 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 268 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 269 IRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 328 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF TM LV I + ++SF YSPR GTP +++ + V Sbjct: 329 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPDNV 388 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + VG + VL+E ++ +L GR+ + V Sbjct: 389 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 448 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I +V S+L G L+ Sbjct: 449 GSPDMIGKFVDVEIVNVYASSLRGILL 475 >gi|212712962|ref|ZP_03321090.1| hypothetical protein PROVALCAL_04060 [Providencia alcalifaciens DSM 30120] gi|212684440|gb|EEB43968.1| hypothetical protein PROVALCAL_04060 [Providencia alcalifaciens DSM 30120] Length = 476 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 295/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M + S GY+ + ++ADL++LNTC IREKA EKV+ Sbjct: 5 KKLYMKTWGCQMNEYDSSKMVSLLESTHGYQLTDIAEEADLLLLNTCSIREKAQEKVFHQ 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + K+ + D+++ V GCVA EG+ I +R+P V++V GPQT +RLPE++ + Sbjct: 65 LGRWKFFKDKK----PDIIIGVGGCVASQEGDFIRQRAPCVDIVFGPQTLHRLPEMINQI 120 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R ++D + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG Sbjct: 121 Q-GNRSPIIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNA+RG+ DGE C+F++LL ++ I G+ Sbjct: 175 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGETFDGEICSFAELLRLVASIDGID 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 235 RVRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRK 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RP I ISSDFIVGFPGET DDF TM L+ + + ++SF YS R GTP +++ + Sbjct: 295 LREARPGILISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFVYSARPGTPAADLPDD 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E+ K ERL LQ+++ +Q +SF+ A +G + +L+E ++ +L GR+ + V Sbjct: 355 VSEDEKKERLYLLQQRINQQAMSFSRAMLGTVQRILVEGTSRKNVMELSGRTENNRVVNF 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G+++ Sbjct: 415 EGTPDMIGKFVDVEIVDVYTNSLRGKVI 442 >gi|238795390|ref|ZP_04638905.1| hypothetical protein ymoll0001_9790 [Yersinia mollaretii ATCC 43969] gi|238720509|gb|EEQ12310.1| hypothetical protein ymoll0001_9790 [Yersinia mollaretii ATCC 43969] Length = 486 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/447 (44%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ + +DADL++LNTC IREKA EKV+S Sbjct: 15 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTETPEDADLLLLNTCSIREKAQEKVFSL 74 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG ++LK ++ +L++ V GCVA EGE + +R+P V+++ GPQT +RLPE++ Sbjct: 75 LGHWKSLK----EKNPELIIGVGGCVASQEGEHLRQRAPCVDIIFGPQTLHRLPEMINHV 130 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 131 QGSHSSVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 185 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 186 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGPTYDGDICSFAELLRLVAAIDGIDR 245 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 246 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 305 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGET DF T+ LV I + ++SF YS R GTP +++ + V Sbjct: 306 RQARPDIQISSDFIIGFPGETQHDFEQTLKLVADIHFDTSYSFIYSSRPGTPAADLPDDV 365 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + +G + +L+E ++ +L GR+ + V Sbjct: 366 SEEEKKQRLHILQQRITQQAMEISRKMIGSVQRILVEGPSRKNAMELAGRTENNRVVNFE 425 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV S+L G L+ Sbjct: 426 GVPSMIGQFVDVEIIDVYASSLRGILL 452 >gi|186894491|ref|YP_001871603.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia pseudotuberculosis PB1/+] gi|186697517|gb|ACC88146.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Yersinia pseudotuberculosis PB1/+] Length = 509 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 38 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 97 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ + LK ++ L++ V GCVA EGE++ +R+P V+V+ GPQT +RLPE++ Sbjct: 98 LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 153 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 154 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 208 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 209 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 268 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 269 IRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 328 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF TM LV I + ++SF YSPR GTP +++ + V Sbjct: 329 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPDNV 388 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + VG + VL+E ++ +L GR+ + V Sbjct: 389 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 448 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I +V S+L G L+ Sbjct: 449 GSPDMIGKFVDVEIVNVYASSLRGILL 475 >gi|145599895|ref|YP_001163971.1| tRNA-thiotransferase [Yersinia pestis Pestoides F] gi|145211591|gb|ABP40998.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Yersinia pestis Pestoides F] Length = 479 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 8 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 67 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ + LK ++ L++ V GCVA EGE++ +R+P V+V+ GPQT +RLPE++ Sbjct: 68 LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 123 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 124 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 179 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 238 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 239 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 298 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF TM LV I + ++SF YSPR GTP +++ + V Sbjct: 299 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPDNV 358 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + VG + VL+E ++ +L GR+ + V Sbjct: 359 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 418 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I +V S+L G L+ Sbjct: 419 GSPDMIGKFVDVEIVNVYASSLRGILL 445 >gi|294625996|ref|ZP_06704606.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664199|ref|ZP_06729579.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599666|gb|EFF43793.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292606024|gb|EFF49295.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 484 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 207/463 (44%), Positives = 300/463 (64%), Gaps = 19/463 (4%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHI 72 V++ +V + ++K++GCQMN YDS +M D+ S+G E ++ ++AD++++NTC I Sbjct: 25 VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 84 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 REKA EKV+S LGR + LK G +++ V GCVA EGE I++R+P V++V GPQT Sbjct: 85 REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 140 Query: 133 YYRLPELLERAR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 +RLPEL+ RAR GK VD + +KF+RL R G +AF++I EGC K+C Sbjct: 141 LHRLPELI-RARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYC 194 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLD-GEKCTFS 248 +FCVVPYTRG E+SR V+ E +L GV EI LLGQNVNA+RG G D G+ ++ Sbjct: 195 SFCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDTAQYA 254 Query: 249 DL---LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 DL + ++++I+G+ R+R+TTSHP + SD L+ A+ D+ L YLHLPVQ+GSDRIL + Sbjct: 255 DLGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSA 314 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R +TA E++ I ++R+VRPDI+ISSDFIVGFPGET+ DF TM L++ +G+ Q+FSF Sbjct: 315 MKRGYTALEFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSF 374 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KE 424 YS R GTP S++ + E VK RL LQ + S + + VG + VL+E ++ Sbjct: 375 VYSRRPGTPASDLQDDTPEAVKQGRLARLQAHINAHAASISQSMVGSVQRVLVEGPSRRD 434 Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 +L G+S ++ V IG + V IT+ ++L G + Sbjct: 435 PNELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477 >gi|253990619|ref|YP_003041975.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782069|emb|CAQ85233.1| trna-methylthiotransferase miab protein [Photorhabdus asymbiotica] Length = 476 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 296/448 (66%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ S GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 5 KKLYIKTWGCQMNEYDSSKMADLLESTHGYQLTDVAEEADILLLNTCSIREKAQEKVFHQ 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR +NLK++ D+++ V GCVA EG+ I +R+ V+++ GPQT +RLPE++ + Sbjct: 65 LGRWKNLKDT----NPDIIIGVGGCVASQEGDFIRKRAQCVDIIFGPQTLHRLPEMINQV 120 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R VVD + +KF+RL R G +AF++I EGC+K+CTFCVVPYTRG Sbjct: 121 K-GTRSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTFCVVPYTRGE 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ Sbjct: 175 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGID 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 235 RIRFTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTLMKRAHTALEYKSIIRK 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPDI ISSDFI+GFPGET DDF TM L+ + + ++SF YS R GTP +++ + Sbjct: 295 LRKARPDILISSDFIIGFPGETQDDFEKTMKLIADVNFDMSYSFIYSARPGTPAADLPDD 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ A +G + +L+E ++ +L GR+ + V Sbjct: 355 VSEEEKKQRLYLLQQRINQQAMNYSRAMLGSVQRILVEGTSRKNVMELSGRTENNRVVNF 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG + V I DV ++L G+++ Sbjct: 415 EGQPDMIGKFVDVEIVDVYANSLRGKVI 442 >gi|229891216|sp|B1JG95|MIAB_YERPY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 474 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ + LK ++ L++ V GCVA EGE++ +R+P V+V+ GPQT +RLPE++ Sbjct: 63 LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 QETNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF TM LV I + ++SF YSPR GTP +++ + V Sbjct: 294 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPDNV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + VG + VL+E ++ +L GR+ + V Sbjct: 354 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I +V S+L G L+ Sbjct: 414 GSPDMIGKFVDVEIVNVYASSLRGILL 440 >gi|51595460|ref|YP_069651.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia pseudotuberculosis IP 32953] gi|153950190|ref|YP_001401877.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia pseudotuberculosis IP 31758] gi|81640093|sp|Q66DD3|MIAB_YERPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229891036|sp|A7FKU9|MIAB_YERP3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229891221|sp|B2K896|MIAB_YERPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|51588742|emb|CAH20353.1| putative tRNA-thiotransferase [Yersinia pseudotuberculosis IP 32953] gi|152961685|gb|ABS49146.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pseudotuberculosis IP 31758] Length = 474 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ + LK ++ L++ V GCVA EGE++ +R+P V+V+ GPQT +RLPE++ Sbjct: 63 LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF TM LV I + ++SF YSPR GTP +++ + V Sbjct: 294 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPDNV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + VG + VL+E ++ +L GR+ + V Sbjct: 354 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I +V S+L G L+ Sbjct: 414 GSPDMIGKFVDVEIVNVYASSLRGILL 440 >gi|162421780|ref|YP_001606317.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis Angola] gi|162354595|gb|ABX88543.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis Angola] Length = 482 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 11 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 70 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ + LK ++ L++ V GCVA EGE++ +R+P V+V+ GPQT +RLPE++ Sbjct: 71 LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 126 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 127 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 181 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 182 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 241 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 242 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 301 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF TM LV I + ++SF YSPR GTP +++ + V Sbjct: 302 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPDNV 361 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + VG + VL+E ++ +L GR+ + V Sbjct: 362 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 421 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I +V S+L G L+ Sbjct: 422 GSPDMIGKFVDVEIVNVYASSLRGILL 448 >gi|160896962|ref|YP_001562544.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Delftia acidovorans SPH-1] gi|229890511|sp|A9BUQ1|MIAB_DELAS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|160362546|gb|ABX34159.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Delftia acidovorans SPH-1] Length = 442 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 208/449 (46%), Positives = 289/449 (64%), Gaps = 15/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ +QGYE + + ADLI+ NTC +REKA EKV+S Sbjct: 3 KKVFIKTFGCQMNEYDSDKMADVLGAAQGYESTDDPEQADLILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR ++LK + L+ V GCVA EGEEI++R+P V+VV GPQT +RLPELL R Sbjct: 63 LGRYKHLKERGV------LIGVGGCVASQEGEEIIKRAPYVDVVFGPQTLHRLPELLNAR 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A K VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 117 AAKHKPQVDISFPEIEKFDHLPPA-----RVEGSSAFVSIMEGCSKYCSYCVVPYTRGEE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L D GV E+TLLGQNVNA+ GK G E F+ LL +SEI G+ Sbjct: 172 VSRPFEDVLIEVAGLADQGVKEVTLLGQNVNAYLGKMGDTAEIADFALLLEYVSEIPGIE 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP + + LI+A+ L L+ +LHLPVQ GSD+IL +M R +TA EY+ I + Sbjct: 232 RIRYTTSHPNEFTPRLIEAYARLPKLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTIRK 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RP++A+SSDFIVGFPGET++DF+ M L+ + + +FSF +SPR GTP +N+ + Sbjct: 292 LRAIRPEMAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDD 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440 VK RL LQ + +D VG + +L+E K G +L+GR+ + V Sbjct: 352 TPHEVKLRRLQELQAVINNNIKDISDERVGTVQRLLVEGLSKRDGSELMGRTECNRVVNF 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 IG +I V+IT+ + TL GE+VV Sbjct: 412 PGNERLIGQMIDVKITEARTFTLRGEVVV 440 >gi|119775707|ref|YP_928447.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella amazonensis SB2B] gi|119768207|gb|ABM00778.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella amazonensis SB2B] Length = 483 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/450 (44%), Positives = 291/450 (64%), Gaps = 12/450 (2%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKV 80 ++ ++ +K++GCQMN YDS +M D+ QGY ++AD+++LNTC IREKA EKV Sbjct: 9 LMSKKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKV 68 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 + LGR + LK+ + DL++ V GCVA EG+ I R+ V+++ GPQT +RLPE++ Sbjct: 69 FHQLGRWKTLKD----KNPDLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMI 124 Query: 141 ERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 ++ R G K V+D + +KF+RL R G TAF++I EGC K+C+FCVVPYTR Sbjct: 125 DQVRSGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTR 179 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E+SR + ++ E +L + GV E+ LLGQNVNA+RG DGE CTF++LL ++ I G Sbjct: 180 GEEVSRPMDDIILEIAQLAEQGVREVNLLGQNVNAYRGAKHDGEICTFAELLRHVAAIDG 239 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + RLR+TTSHP + + +I + D L+ +LHLPVQSGSDRIL +M R H A EY+ II Sbjct: 240 IDRLRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSII 299 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R+R RPDI ISSDFIVGFPGET DF+ TM L++ + + +FSF YS R GTP +++ Sbjct: 300 RRLRKARPDIQISSDFIVGFPGETAQDFQDTMKLIEDVNFDMSFSFIYSARPGTPAADLP 359 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438 + VD K +RL LQ+ + +Q + ++ +G + +L+E K +L GR+ + V Sbjct: 360 DDVDMEEKKQRLADLQELINQQAMRYSRQMMGTVQRILVEGPSVKNPMELRGRTETNRVV 419 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG + V I DV ++L G+ + Sbjct: 420 NFEGLHKHIGTFVDVEIVDVFPNSLRGKFI 449 >gi|108808470|ref|YP_652386.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia pestis Antiqua] gi|108811270|ref|YP_647037.1| tRNA-thiotransferase [Yersinia pestis Nepal516] gi|165925283|ref|ZP_02221115.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar Orientalis str. F1991016] gi|165937683|ref|ZP_02226245.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar Orientalis str. IP275] gi|166008584|ref|ZP_02229482.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar Antiqua str. E1979001] gi|166212269|ref|ZP_02238304.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar Antiqua str. B42003004] gi|167422525|ref|ZP_02314278.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423482|ref|ZP_02315235.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|294504424|ref|YP_003568486.1| tRNA-thiotransferase [Yersinia pestis Z176003] gi|108774918|gb|ABG17437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Yersinia pestis Nepal516] gi|108780383|gb|ABG14441.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Yersinia pestis Antiqua] gi|165914433|gb|EDR33048.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar Orientalis str. IP275] gi|165922890|gb|EDR40041.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar Orientalis str. F1991016] gi|165992966|gb|EDR45267.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar Antiqua str. E1979001] gi|166206200|gb|EDR50680.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar Antiqua str. B42003004] gi|166958539|gb|EDR55560.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167057652|gb|EDR67398.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262362586|gb|ACY59307.1| tRNA-thiotransferase [Yersinia pestis D106004] gi|262366410|gb|ACY62967.1| tRNA-thiotransferase [Yersinia pestis D182038] gi|294354883|gb|ADE65224.1| tRNA-thiotransferase [Yersinia pestis Z176003] Length = 479 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 8 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 67 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ + LK ++ L++ V GCVA EGE++ +R+P V+V+ GPQT +RLPE++ Sbjct: 68 LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 123 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 124 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 179 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 238 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 239 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 298 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF TM LV I + ++SF YSPR GTP +++ V Sbjct: 299 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPNNV 358 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + VG + VL+E ++ +L GR+ + V Sbjct: 359 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 418 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I +V S+L G L+ Sbjct: 419 GSPDMIGKFVDVEIVNVYASSLRGILL 445 >gi|330828617|ref|YP_004391569.1| tRNA methylthiotransferase [Aeromonas veronii B565] gi|328803753|gb|AEB48952.1| tRNA methylthiotransferase [Aeromonas veronii B565] Length = 477 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDASNGYTLTEEPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK + K G L++ V GCVA EG+ I +R+P V++V GPQT +RLP +++ Sbjct: 63 LGRWKKLKAN--KPG--LVIGVGGCVASQEGDAIRQRAPYVDIVFGPQTLHRLPAMIKEV 118 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G+ VD + +KF+ L R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QEGRGAQVDIAFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L GV E+ LLGQNVNA+RG DG CTF++LL ++ I G+ R Sbjct: 174 VSRPLDDVLYEIAQLAQQGVREVNLLGQNVNAYRGPTFDGGICTFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + +D +I+ + D ++ +LHLPVQSGSDRIL M R HT EY+ I R+ Sbjct: 234 IRYTTSHPIEFTDDIIEVYKDTPEVVSFLHLPVQSGSDRILTMMKRPHTILEYKSKIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPDI ISSDFIVGFP ETD+DF ATM L++ +G+ +FSF +SPR GTP ++M + V Sbjct: 294 RAARPDITISSDFIVGFPNETDEDFEATMKLIEDVGFDMSFSFIFSPRPGTPAADMPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441 D VK RL LQ + Q + A +G +L+E K + +L GR+ + V Sbjct: 354 DMEVKKARLARLQHVINNQAMQIGRAMLGTTQRILVEGPSKLDPMQLCGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 ++ IG V IT+V+ ++L G+ + Sbjct: 414 GQHTLIGGFADVEITEVRPNSLRGKFI 440 >gi|45440923|ref|NP_992462.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia pestis biovar Microtus str. 91001] gi|45435782|gb|AAS61339.1| putative tRNA-thiotransferase [Yersinia pestis biovar Microtus str. 91001] Length = 512 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 41 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 100 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ + LK ++ L++ V GCVA EGE++ +R+P V+V+ GPQT +RLPE++ Sbjct: 101 LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 156 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 157 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 211 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 212 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 271 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 272 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 331 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF TM LV I + ++SF YSPR GTP +++ + V Sbjct: 332 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPDNV 391 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + VG + VL+E ++ +L GR+ + V Sbjct: 392 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 451 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I +V S+L G L+ Sbjct: 452 GSPDMIGKFVDVEIVNVYASSLRGILL 478 >gi|229895960|ref|ZP_04511130.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis Pestoides A] gi|229891217|sp|A9R6X8|MIAB_YERPG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229891219|sp|A4TNY6|MIAB_YERPP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229700883|gb|EEO88912.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis Pestoides A] Length = 474 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ + LK ++ L++ V GCVA EGE++ +R+P V+V+ GPQT +RLPE++ Sbjct: 63 LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF TM LV I + ++SF YSPR GTP +++ + V Sbjct: 294 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPDNV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + VG + VL+E ++ +L GR+ + V Sbjct: 354 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I +V S+L G L+ Sbjct: 414 GSPDMIGKFVDVEIVNVYASSLRGILL 440 >gi|289665632|ref|ZP_06487213.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 484 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 205/454 (45%), Positives = 294/454 (64%), Gaps = 17/454 (3%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +V + ++K++GCQMN YDS +M D+ S+G E ++ +DAD++++NTC IREKA EKV Sbjct: 33 VVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEKV 92 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 +S LGR + LK G +++ V GCVA EGE I++R+P V++V GPQT +RLPEL+ Sbjct: 93 FSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELI 148 Query: 141 E-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 R GK VD + +KF+RL R G +AF++I EGC K+C+FCVVPYTR Sbjct: 149 RARRESGKSQVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYCSFCVVPYTR 203 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLD-GEKCTFSDL---LYSL 254 G E+SR V+ E +L GV EI LLGQNVNA+RG G D G+ ++DL + ++ Sbjct: 204 GEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGGYGADAGDAAQYADLGLLIRTI 263 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 ++I G+ R+R+TTSHP + SD L+ A+ D+ L YLHLPVQ+GSDRIL +M R +TA E Sbjct: 264 AQIDGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALE 323 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 ++ I ++R+VRPDI+ISSDFIVGFPGET+ DF TM L++ +G+ Q+FSF YS R GTP Sbjct: 324 FKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPGTP 383 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433 S++ + E VK RL LQ + S + + VG + VL+E ++ +L G+S Sbjct: 384 ASDLQDDTPEAVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDPNELTGKSE 443 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ V IG + V IT+ ++L G + Sbjct: 444 NMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477 >gi|269468093|gb|EEZ79803.1| 2-methylthioadenine synthetase [uncultured SUP05 cluster bacterium] Length = 441 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 192/445 (43%), Positives = 290/445 (65%), Gaps = 11/445 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++++GCQMN YDS +M D+ S G E + + +AD+++LNTC IREKA EK++ L Sbjct: 5 KLHIRTFGCQMNEYDSNKMFDVLKHSHGLESTDDVLEADVLLLNTCSIREKAQEKLFHQL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR R LK ++ +L++ V GCVA EGE IL+R+P V+++ GPQT +RLP +L Sbjct: 65 GRWRKLK----EKNPNLVIGVGGCVASQEGELILKRAPYVDIIFGPQTLHRLPAMLNDVL 120 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K+ +D + +KF+ L + GVT+F++I EGC K+CTFCVVPYTRG E+ Sbjct: 121 GDKKTSIDISFPEIEKFDHLP-----EPKTNGVTSFVSIMEGCSKYCTFCVVPYTRGEEV 175 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR V+ E + L + GV E+ LLGQNVNA++G DG+ + L+ +++I G+ R+ Sbjct: 176 SRPFDDVIKEVQILANQGVREVNLLGQNVNAYQGLMDDGQSADLALLINLVAQINGIDRI 235 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP + SD LI+A+ ++ L+ +LHLP+QSGSD+IL M R HTA EY+ I R+R Sbjct: 236 RYTTSHPVEFSDSLIQAYAEVPELVSHLHLPIQSGSDKILTLMKRGHTALEYKSKIRRLR 295 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +RPDI+ISSDFI+GFPGET DF TM +++ IG+ ++FSF YSPR GTP + + VD Sbjct: 296 EIRPDISISSDFIIGFPGETKQDFNDTMKVINDIGFDKSFSFIYSPRPGTPATGYPDDVD 355 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 +K +RL +QK + E + + + +G + +VL+E ++ L G++ +++ Sbjct: 356 MKIKKDRLSLVQKTIDESTETISKSMIGSVQKVLVENKARKDDNLFGKTENMRNTHFKGN 415 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 IG I+ V+IT + ++L G+L Sbjct: 416 ESLIGQIVSVKITAARGNSLVGKLT 440 >gi|149365479|ref|ZP_01887514.1| putative tRNA-thiotransferase [Yersinia pestis CA88-4125] gi|218929701|ref|YP_002347576.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia pestis CO92] gi|229838168|ref|ZP_04458327.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229898721|ref|ZP_04513866.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis biovar Orientalis str. India 195] gi|229901508|ref|ZP_04516630.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis Nepal516] gi|122959987|sp|Q0WDR2|MIAB_YERPE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229891218|sp|Q1CKP3|MIAB_YERPN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229891220|sp|Q1C531|MIAB_YERPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|115348312|emb|CAL21243.1| putative tRNA-thiotransferase [Yersinia pestis CO92] gi|149291892|gb|EDM41966.1| putative tRNA-thiotransferase [Yersinia pestis CA88-4125] gi|229681437|gb|EEO77531.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis Nepal516] gi|229688269|gb|EEO80340.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis biovar Orientalis str. India 195] gi|229694534|gb|EEO84581.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis biovar Orientalis str. PEXU2] Length = 474 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ + LK ++ L++ V GCVA EGE++ +R+P V+V+ GPQT +RLPE++ Sbjct: 63 LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF TM LV I + ++SF YSPR GTP +++ V Sbjct: 294 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPNNV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + VG + VL+E ++ +L GR+ + V Sbjct: 354 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I +V S+L G L+ Sbjct: 414 GSPDMIGKFVDVEIVNVYASSLRGILL 440 >gi|167399273|ref|ZP_02304797.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|270489694|ref|ZP_06206768.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis KIM D27] gi|167051777|gb|EDR63185.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|270338198|gb|EFA48975.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Yersinia pestis KIM D27] Length = 482 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 11 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 70 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ + LK ++ L++ V GCVA EGE++ +R+P V+V+ GPQT +RLPE++ Sbjct: 71 LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 126 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 127 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 181 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 182 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 241 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 242 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 301 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF TM LV I + ++SF YSPR GTP +++ V Sbjct: 302 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPNNV 361 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + VG + VL+E ++ +L GR+ + V Sbjct: 362 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 421 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I +V S+L G L+ Sbjct: 422 GSPDMIGKFVDVEIVNVYASSLRGILL 448 >gi|308186037|ref|YP_003930168.1| UPF0004 protein [Pantoea vagans C9-1] gi|308056547|gb|ADO08719.1| UPF0004 protein [Pantoea vagans C9-1] Length = 506 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/447 (44%), Positives = 285/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY ++AD+++LNTC IREKA EKV+ Sbjct: 35 KKLHIKTWGCQMNEYDSSKMSDLLNSTHGYTLTEVPEEADILLLNTCSIREKAQEKVFHL 94 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + D+++ V GCVA EG+ I +R+P V++V GPQT +RLPE++ Sbjct: 95 LGRWRKLK----ERNPDVIIGVGGCVASQEGDHIRQRAPCVDIVFGPQTLHRLPEMINTV 150 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 151 RGTKSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 205 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DGE CTF++LL ++ I G+ R Sbjct: 206 VSRPSDDILLEIAQLAAQGVREVNLLGQNVNAYRGATFDGEICTFAELLRLVAAIDGIDR 265 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSG+DRIL M R HTA EY+ II ++ Sbjct: 266 IRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 325 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPDI ISSDFI+GFPGET DF TM L+ I + +FSF YS R GTP +++ + V Sbjct: 326 RAARPDIEISSDFIIGFPGETQQDFEQTMKLIADINFDVSFSFIYSARPGTPAADLPDDV 385 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ ++ +Q + + +G + +L+E ++ ++ GR+ + V Sbjct: 386 SEEEKKQRLWILQDRINQQAQAISRRMLGTVQRILVEGISRKNVMEVSGRTENNRVVNFE 445 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G+LV Sbjct: 446 GTPEMIGRFVDVEIVDVYTNSLRGKLV 472 >gi|229890664|sp|A1S8S1|MIAB_SHEAM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 474 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ QGY ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + DL++ V GCVA EG+ I R+ V+++ GPQT +RLPE++++ Sbjct: 63 LGRWKTLKD----KNPDLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIDQV 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G K V+D + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 RSGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + ++ E +L + GV E+ LLGQNVNA+RG DGE CTF++LL ++ I G+ R Sbjct: 174 VSRPMDDIILEIAQLAEQGVREVNLLGQNVNAYRGAKHDGEICTFAELLRHVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + + +I + D L+ +LHLPVQSGSDRIL +M R H A EY+ II R+ Sbjct: 234 LRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF+ TM L++ + + +FSF YS R GTP +++ + V Sbjct: 294 RKARPDIQISSDFIVGFPGETAQDFQDTMKLIEDVNFDMSFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 D K +RL LQ+ + +Q + ++ +G + +L+E K +L GR+ + V Sbjct: 354 DMEEKKQRLADLQELINQQAMRYSRQMMGTVQRILVEGPSVKNPMELRGRTETNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG + V I DV ++L G+ + Sbjct: 414 GLHKHIGTFVDVEIVDVFPNSLRGKFI 440 >gi|22125098|ref|NP_668521.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia pestis KIM 10] gi|21957953|gb|AAM84772.1|AE013722_11 hypothetical protein y1195 [Yersinia pestis KIM 10] Length = 512 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 41 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 100 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ + LK ++ L++ V GCVA EGE++ +R+P V+V+ GPQT +RLPE++ Sbjct: 101 LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 156 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 157 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 211 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 212 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 271 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 272 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 331 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF TM LV I + ++SF YSPR GTP +++ V Sbjct: 332 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPNNV 391 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + VG + VL+E ++ +L GR+ + V Sbjct: 392 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 451 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I +V S+L G L+ Sbjct: 452 GSPDMIGKFVDVEIVNVYASSLRGILL 478 >gi|242238554|ref|YP_002986735.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya dadantii Ech703] gi|242130611|gb|ACS84913.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya dadantii Ech703] Length = 476 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/447 (44%), Positives = 290/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS ++ D+ S GY+ ++AD+++LNTC IREKA EKV+ Sbjct: 5 KKLHIKTWGCQMNEYDSSKIADLLESTHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR ++LK+ +L++ V GCVA EGE I R+ V+V+ GPQT +RLPE++ Sbjct: 65 LGRWKSLKDL----NPELIIGVGGCVASQEGEHIRERAHYVDVIFGPQTLHRLPEMINHV 120 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + +VD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 121 QGTHSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L + GV E+ LLGQNVNA+RG+ DGE C+F+DLL ++ I G+ R Sbjct: 176 VSRPCDDILYEIAQLAEQGVREVNLLGQNVNAYRGETYDGEICSFADLLRLVAAIDGIDR 235 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDR+L M RRHTA EY+ II ++ Sbjct: 236 IRFTTSHPIEFTDDIIGVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIRKL 295 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R VRPDI ISSDFIVGFPGET +DF TM L+ + + +FSF YSPR GTP ++M++ V Sbjct: 296 RKVRPDIQISSDFIVGFPGETQEDFEQTMKLIADVNFDMSFSFIYSPRPGTPAADMVDDV 355 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + ++ G + +L+E ++ +L GR+ + V Sbjct: 356 CEEEKKQRLYILQERISQQAMQYSRRMQGTVQRILVEGPSRKNVMELSGRTENNRVVNFE 415 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G +V Sbjct: 416 GSPDMIGKFVDVEIVDVYPNSLRGIVV 442 >gi|221134934|ref|ZP_03561237.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Glaciecola sp. HTCC2999] Length = 476 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/449 (44%), Positives = 294/449 (65%), Gaps = 16/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ ++K++GCQMN YDS +M D+ + GY +DAD+I+LNTC IREKA EKV+ Sbjct: 3 QKLYIKTWGCQMNEYDSEKMADLLDATHGYTLAEEAEDADVILLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR +NLKN + DL++ V GCVA EG+ I +R+P V+++ GPQT +RLPE+++ Sbjct: 63 LGRWKNLKNDK----PDLIIGVGGCVASQEGDHIRQRAPYVDIIFGPQTLHRLPEMIKDI 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G K VVD + +KF+RL R G +AF++I EGC K+CTFCVVPYTRG E Sbjct: 119 KGGSKSVVDVSFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DG C F++LL ++ I G+ R Sbjct: 174 VSRPVDDVLLEVAQLAEQGVREVNLLGQNVNAFRGPHFDGSICRFAELLELIASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + +D +I+A+ + L+ +LHLPVQSGSDRIL M R HTA EY+ I + Sbjct: 234 IRYTTSHPVEFTDDIIEAYASIPELVDHLHLPVQSGSDRILNLMKRGHTAIEYKSKIRAL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + +RP++++SSDFI+GFPGE++ DF TM L++ I Y +FSF YS R GTP +++ + V Sbjct: 294 KKIRPNLSMSSDFIIGFPGESEQDFADTMKLINDIEYDLSFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLRE--QQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439 E K +RL LQ+++ + Q+++ N Q +L+E K+ +L GR+ + V Sbjct: 354 SEAEKKQRLWILQERINQSAQRIARNMMDTEQ--RILVEGPSKKNPMELTGRTENNRVVN 411 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V++TDV ++L G ++ Sbjct: 412 FEGTPDMIGQFVDVKVTDVYSNSLRGNVI 440 >gi|58426983|gb|AAW76020.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 550 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 205/462 (44%), Positives = 298/462 (64%), Gaps = 17/462 (3%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHI 72 V++ +V + ++K++GCQMN YDS +M D+ S+G E ++ ++AD++++NTC I Sbjct: 91 VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 150 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 REKA EKV+S LGR + LK G +++ V GCVA EGE I++R+P V++V GPQT Sbjct: 151 REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 206 Query: 133 YYRLPELLE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 +RLPEL+ R GK VD + +KF+RL R G +AF++I EGC K+C+ Sbjct: 207 LHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCS 261 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLD-GEKCTFSD 249 FCVVPYTRG E+SR V+ E +L GV EI LLGQNVNA+RG G D G+ ++D Sbjct: 262 FCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDPAQYAD 321 Query: 250 L---LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 L + ++++I+G+ R+R+TTSHP + SD L+ A+ D+ L YLHLPVQ+GSDRIL +M Sbjct: 322 LGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAM 381 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R +TA E++ I ++R+VRPDI+ISSDFIVGFPGET+ DF TM L++ +G+ Q+FSF Sbjct: 382 KRGYTALEFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFV 441 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425 YS R GTP S++ + E VK RL LQ + S + + VG + VL+E ++ Sbjct: 442 YSRRPGTPASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDP 501 Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 +L G+S ++ V IG + V IT+ ++L G + Sbjct: 502 NELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 543 >gi|90416864|ref|ZP_01224793.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma proteobacterium HTCC2207] gi|90331211|gb|EAS46455.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma proteobacterium HTCC2207] Length = 451 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/448 (45%), Positives = 290/448 (64%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ + ++GCQMN YDS RM D+ S +S +DAD+I+LNTC IREKA EKV+ Sbjct: 13 KKLHIVTHGCQMNEYDSARMRDLLGDSHQMIATDSAEDADVILLNTCSIREKAQEKVFHQ 72 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR ++LK + DL++ V GCVA EG I +R+P V++V GPQT +RLPE++E Sbjct: 73 LGRWKHLKEA----NPDLIIGVGGCVASQEGAAIAKRAPFVDLVFGPQTLHRLPEMMETN 128 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G VVD + +KF+RL + GV+AF++I EGC K+C+FCVVPYTRG E Sbjct: 129 QADGTVVVDISFPEIEKFDRLPTPEAD-----GVSAFVSIMEGCSKYCSFCVVPYTRGEE 183 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ V+ E L GV E+ LLGQNVNA+ G+ DG C F++LL +++I G+ R Sbjct: 184 VSRPMADVLAEIAALAQQGVREVNLLGQNVNAYLGEMPDGSICDFAELLPYVADIAGIDR 243 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+ + + L+ +LHLPVQSGSD+IL +M R HTA EY+ I R+ Sbjct: 244 IRYTTSHPVEFSDRLIETYARVPELVSHLHLPVQSGSDKILMAMKRGHTAIEYKSKIRRL 303 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R VRPDI+ISSDFI+GFP E+++DF ATM L+ IG+ +FSF YS R GTP +++ + Sbjct: 304 REVRPDISISSDFIIGFPNESEEDFSATMKLISDIGFDTSFSFIYSARPGTPAADLPDNT 363 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441 E VK +RL LQ ++ + + VG+ ++L+ K+ G+L GR+ + V Sbjct: 364 SEAVKKQRLKILQDRISQNAAEISRRMVGKREKLLVTGISKKDPGQLQGRTENNRVVNFR 423 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 S NH IG + +T+ ++L GEL Sbjct: 424 SDNHALIGTFVDSIVTEALTNSLRGELA 451 >gi|145298103|ref|YP_001140944.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|229890493|sp|A4SJX4|MIAB_AERS4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|142850875|gb|ABO89196.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aeromonas salmonicida subsp. salmonicida A449] Length = 477 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDASNGYTLTEEPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK + K G L++ V GCVA EGE I R+P V++V GPQT +RLP ++++ Sbjct: 63 LGRWKKLKAN--KPG--LVIGVGGCVASQEGENIRSRAPYVDIVFGPQTLHRLPAMIKQV 118 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G+ VD + +KF+ L R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 QEGRGAQVDIAFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLYEIAQLAEQGVREVNLLGQNVNAYRGPTFDGSICSFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + +D +I+ + D ++ +LHLPVQSGSDRIL M R HT EY+ I R+ Sbjct: 234 IRYTTSHPIEFTDDIIEVYKDTPEVVSFLHLPVQSGSDRILTMMKRPHTVLEYKSKIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPDI ISSDFIVGFP ETD+DF ATM L+++I + +FSF YSPR GTP ++M + V Sbjct: 294 RAARPDITISSDFIVGFPNETDEDFEATMKLIEEINFDMSFSFIYSPRPGTPAADMPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441 D VK RL LQ + Q + A +G +L+E + + +L GR+ + V Sbjct: 354 DMEVKKVRLARLQHVINNQSMQIGRAMLGSTQRILVEGPSRLDPMQLCGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + IG V IT+V+ ++L G + Sbjct: 414 GAHTLIGGFADVEITEVRPNSLRGRFI 440 >gi|327482390|gb|AEA85700.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pseudomonas stutzeri DSM 4166] Length = 437 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 206/449 (45%), Positives = 288/449 (64%), Gaps = 18/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F++++GCQMN YDS RM D+ Q E + +AD+I+LNTC IREKA EKV+S Sbjct: 3 RKLFIETHGCQMNEYDSSRMVDLLGEHQAMEITENPAEADVILLNTCSIREKAQEKVFSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK ++ L++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELK----QDNPQLVIGVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+RL R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RTTRTPQVDISFPEIEKFDRLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L+ V+ E L +NGV E+TLLGQNVN +R G D F+DLL++++ I+G+ R Sbjct: 174 VSRPLADVLAEIVHLAENGVKEVTLLGQNVNGYRHDGHD-----FADLLHAVAAIEGIGR 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD +I+AH D+ L+ YLHLPVQ+GSDRIL +M R HTA EY+ I R+ Sbjct: 229 IRYTTSHPLEFSDAIIQAHADIPQLVKYLHLPVQAGSDRILAAMKRNHTALEYKSRIRRL 288 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++ PDI ISSDFIVGFPGETD DF TM L++ +G+ ++SF YS R GTP +++ + Sbjct: 289 KAAVPDILISSDFIVGFPGETDKDFEQTMKLIEDVGFDFSYSFVYSARPGTPAADLADDT 348 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E VK +RL LQ+++ +Q + VG +L+ + K+ G L GR+ + V Sbjct: 349 PEEVKKQRLAILQQRINQQGFENSRRMVGTTQRILVSDYSKKDPGMLQGRTEHNRIVNFR 408 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELVV 469 N IG + V I D +L G L+ Sbjct: 409 CDNPRLIGQFVDVHIDDALPHSLRGTLLA 437 >gi|91209704|ref|YP_539690.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli UTI89] gi|117622870|ref|YP_851783.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli APEC O1] gi|218557592|ref|YP_002390505.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli S88] gi|122424608|sp|Q1REQ5|MIAB_ECOUT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890519|sp|B7MFS7|MIAB_ECO45 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890527|sp|A1A8S9|MIAB_ECOK1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|91071278|gb|ABE06159.1| hypothetical protein UTI89_C0659 [Escherichia coli UTI89] gi|115511994|gb|ABJ00069.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli APEC O1] gi|218364361|emb|CAR02036.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli S88] gi|294489495|gb|ADE88251.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli IHE3034] gi|307627908|gb|ADN72212.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli UM146] gi|315287089|gb|EFU46503.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 110-3] gi|323952768|gb|EGB48636.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H252] gi|323958414|gb|EGB54120.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H263] Length = 474 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET DDF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440 >gi|224582505|ref|YP_002636303.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467032|gb|ACN44862.1| MiaB protein (putative tRNA-thiotransferase (or tRNA-methylthiotransferase)) [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 488 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/448 (44%), Positives = 292/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 17 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 76 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 77 LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 132 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 133 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 186 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG F+DLL ++ I G+ Sbjct: 187 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGIFADLLRLVAAIDGID 246 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 247 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 306 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET DDF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 307 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 366 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 367 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVNF 426 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 427 EGTPEMIGKFVDVEITDVYPNSLRGKVV 454 >gi|332288529|ref|YP_004419381.1| hypothetical protein UMN179_00448 [Gallibacterium anatis UMN179] gi|330431425|gb|AEC16484.1| conserved hypothetical protein [Gallibacterium anatis UMN179] Length = 462 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 204/436 (46%), Positives = 284/436 (65%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ S G E + ++AD+++LNTC IREKA EKV+ LGR ++LK Sbjct: 1 MNEYDSAKMADLLNSTHGLELTENAEEADILLLNTCSIREKAQEKVFHQLGRWKDLK--- 57 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153 K+ DL++ V GCVA EGE I R+P V+++ GPQT +RLPE++ + R GK VVD Sbjct: 58 -KQNPDLIIGVGGCVASQEGEHIRDRAPYVDIIFGPQTLHRLPEMVNQIRGGKSAVVDVS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+RL R G TAF++I EGC+K+C+FCVVPYTRG E+SR + V+ E Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L + GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ RLR+TTSHP + Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGPTHDGGICSFAELLRLVAAIDGIDRLRFTTSHPIEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++R RPDI ISS Sbjct: 232 TDDIIDVYRDTPELVSFLHLPVQSGSDRILSMMKRNHTALEYKAIIRKLREARPDIQISS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFIVGFPGET DF TM+L+ ++ + +FSF YS R GTP ++M + V E K +RL Sbjct: 292 DFIVGFPGETAQDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPDDVSEEEKKQRLYL 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ+++ +Q F+ +G +L+E K+ +L GR+ + V IG + Sbjct: 352 LQERINQQASQFSRRMLGTEQRILVEGPSKKDIMELTGRTENNRIVNFVGSPDMIGKFVD 411 Query: 453 VRITDVKISTLYGELV 468 V+ITDV ++L GE+V Sbjct: 412 VKITDVYTNSLRGEVV 427 >gi|90581601|ref|ZP_01237392.1| putative 2-methylthioadenine synthetase [Vibrio angustum S14] gi|90437184|gb|EAS62384.1| putative 2-methylthioadenine synthetase [Vibrio angustum S14] Length = 475 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 203/447 (45%), Positives = 289/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + G+E ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEIPEEADVVLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+++ DL++ V GCVA EG+ I +R+P V+V+ GPQT +RLPE+++R+ Sbjct: 63 LGRWKKLKDNK----PDLVIGVGGCVATQEGDSIRKRAPYVDVIFGPQTLHRLPEMIKRS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K V+D + +KF+ L R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QSNEKTVMDISFPEVEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L + GV E+ LLGQNVNA+RG DGE +F++LL ++ I G+ R Sbjct: 174 VSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEVASFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + +D +I + D L+ YLHLPVQSGSDRIL M R HTA EY+ I ++ Sbjct: 234 IRYTTSHPIEFTDDIIDVYKDTPELVNYLHLPVQSGSDRILTMMKRPHTAIEYKSKIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R VRPDI +SSDFIV FPGETD DF TM L+ +I + ++SF +SPR GTP ++ + Sbjct: 294 RKVRPDITMSSDFIVAFPGETDQDFEDTMKLIREIDFDISYSFIFSPRPGTPAADYPCDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E VK ERL LQ++L Q + +G +L+E ++ +L GR+ + V Sbjct: 354 SEEVKKERLYALQQQLNSQAMRHARQMLGTEQRILVEGPSRKNVMELRGRTENNRIVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+I DV ++L GELV Sbjct: 414 GSADLIGQFVDVKIVDVFTNSLRGELV 440 >gi|218688478|ref|YP_002396690.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli ED1a] gi|293408786|ref|ZP_06652625.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B354] gi|306812915|ref|ZP_07447108.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli NC101] gi|331645818|ref|ZP_08346921.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli M605] gi|229890523|sp|B7MPH7|MIAB_ECO81 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|218426042|emb|CAR06859.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli ED1a] gi|222032414|emb|CAP75153.1| UPF0004 protein yleA [Escherichia coli LF82] gi|291471964|gb|EFF14447.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B354] gi|305853678|gb|EFM54117.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli NC101] gi|312945201|gb|ADR26028.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli O83:H1 str. NRG 857C] gi|320194162|gb|EFW68794.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli WV_060327] gi|323191295|gb|EFZ76559.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli RN587/1] gi|330910419|gb|EGH38929.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli AA86] gi|331044570|gb|EGI16697.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli M605] Length = 474 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG TF+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440 >gi|237707370|ref|ZP_04537851.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|226898580|gb|EEH84839.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] Length = 486 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 15 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 74 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 75 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 130 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 131 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 184 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 185 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 244 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 245 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 304 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET DDF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 305 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 364 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 365 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 424 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 425 EGTPDMIGKFVDVEITDVYPNSLRGKVV 452 >gi|117924735|ref|YP_865352.1| RNA modification protein [Magnetococcus sp. MC-1] gi|229890560|sp|A0L7K3|MIAB_MAGSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|117608491|gb|ABK43946.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Magnetococcus sp. MC-1] Length = 437 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 206/447 (46%), Positives = 294/447 (65%), Gaps = 14/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + ++K++GCQMN YDS RM D+ S ++ + + ADLI+LNTCHIREKA +K++S Sbjct: 2 KHLYIKTFGCQMNSYDSTRMADLLGESHAFQSTDDPEKADLIILNTCHIREKAEDKLFSE 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R L + ++ V GCV QAEG I R+P V +V GPQ Y++LP++++RA Sbjct: 62 LGRLRPLAERGV------ILAVGGCVGQAEGRTIFSRAPYVRMVFGPQNYHKLPQMIQRA 115 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ RV+ D DKF+ L V R +GV +T+QEGCDKFC FCVVPYTRG E Sbjct: 116 LDGETRVIAEDIPSVDKFDNLPQV-----RAQGVVGQVTVQEGCDKFCAFCVVPYTRGRE 170 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR ++ ++ E L GV E+ LLGQNVNA+ G +G + L+ ++ I+G+ R Sbjct: 171 WSRPVAAILAETEALAQQGVREVLLLGQNVNAYAGVDEEGVSYDLALLIRRVALIEGIER 230 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHP DM++ L++ G+++ L PYLHLP+QSGSD IL +M R HT EY ++++ Sbjct: 231 IRFVTSHPVDMNEDLVEVFGEIEQLAPYLHLPIQSGSDAILAAMQRGHTVEEYCTWVEKV 290 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+V PD+A++SDFIVGFPGET+ DF+AT+DL+ ++G+ A+SFKYS R GTP ++M EQV Sbjct: 291 RAVCPDVALASDFIVGFPGETEQDFQATLDLISRLGFDHAYSFKYSSRPGTPAADMPEQV 350 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 DE K+ RL LQ+ L QQ+ N A VG+ VL+E K++ G+L GRS L++V Sbjct: 351 DEAEKSRRLERLQQLLNTQQLQRNKARVGRRESVLVEGVSKKRDGELSGRSGTLRTVNFA 410 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I + ++L G LV Sbjct: 411 GPVALIGQFVDVEIVEGLPNSLRGRLV 437 >gi|123443200|ref|YP_001007174.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|229891035|sp|A1JQA3|MIAB_YERE8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|122090161|emb|CAL13024.1| putative tRNA-thiotransferase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 474 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/447 (44%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTEIPEEADLLLLNTCSIREKAQEKVFSL 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ + LK ++ +L++ V GCVA EGE + +R+P V+V+ GPQT +RLPE++ Sbjct: 63 LGQWKLLK----EKNPELIIGVGGCVASQEGEHLRQRAPCVDVIFGPQTLHRLPEMINHV 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 QGTHSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGET DF TM LV + + ++SF YSPR GTP +++ + V Sbjct: 294 RQARPDIQISSDFIIGFPGETQQDFEQTMKLVADVRFDTSYSFIYSPRPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + VG + +L+E ++ +L GR+ + V Sbjct: 354 SEEEKKQRLHILQQRITQQAMEISREMVGTVQRILVEGTSRKNVMELAGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV S+L G L+ Sbjct: 414 GTPEMIGKFVDVEIVDVYASSLRGILL 440 >gi|114561896|ref|YP_749409.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella frigidimarina NCIMB 400] gi|122300718|sp|Q087J4|MIAB_SHEFN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|114333189|gb|ABI70571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella frigidimarina NCIMB 400] Length = 474 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/447 (44%), Positives = 288/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ QGY +AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDDYQGYTLTEDASEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR ++LK+ + +L++ V GCVA EG+ I R+ V+++ GPQT +RLPE++E+ Sbjct: 63 LGRWKSLKD----KNPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIEQI 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G K V+D + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 QRGEKAVIDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L GV E+ LLGQNVNA+RG D E CTF++LL ++ I G+ R Sbjct: 174 VSRPLDDVILEVAQLAAQGVREVNLLGQNVNAYRGATHDDEICTFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + + +I + D L+ +LHLPVQSGSDRIL M R H A EY+ II R+ Sbjct: 234 LRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTQMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGE+ DDF TM L++ + + +FSF YS R GTP +++ + V Sbjct: 294 RKARPDIQISSDFIIGFPGESKDDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 + K +RL LQ ++ +Q + ++ +G + +L+E K +L GR+ + V Sbjct: 354 SDEEKKQRLAILQDRITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTENSRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + + +IG + V+I DV ++L GE V Sbjct: 414 AAHTHIGSFVDVKIVDVYTNSLRGEFV 440 >gi|312171728|emb|CBX79986.1| UPF0004 protein PA3980 [Erwinia amylovora ATCC BAA-2158] Length = 480 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY +DAD+++LNTC IREKA EKV+ Sbjct: 9 KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFGL 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK + DL++ V GCVA EG +I +R+ V++V GPQT +RLPE++ Sbjct: 69 LGRWKKLKEA----NPDLIIGVGGCVASQEGAKIRQRASCVDIVFGPQTLHRLPEMINSV 124 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VVD + +KF+R+ R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 125 RGSKSPVVDVSFPEIEKFDRMP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGEE 179 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R Sbjct: 180 VSRPADDILFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAIDGIDR 239 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I+ + D L+ YLHLPVQSG+DRIL M R HTA EY+ II ++ Sbjct: 240 IRFTTSHPIEFTDDIIEVYRDTPELVSYLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 299 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + RPDI ISSDFI+GFPGET DF TM LV +I + ++SF YS R GTP + + + V Sbjct: 300 LAARPDIQISSDFIIGFPGETQADFEQTMKLVGEINFDTSYSFIYSARPGTPAAELPDDV 359 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K +RL LQ ++ +Q ++++ +G + +L+E ++ +L GR+ + V Sbjct: 360 SEDEKKQRLYVLQDRISQQAMAWSRRKLGTVQRILVEGTSRKNVMELSGRTECNRVVNFE 419 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG + V+ITDV ++L G L+ Sbjct: 420 ATPDHIGKFVDVKITDVYANSLRGVLL 446 >gi|117619554|ref|YP_857732.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|229890492|sp|A0KN81|MIAB_AERHH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|117560961|gb|ABK37909.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 477 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 203/447 (45%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDASNGYTLTEEPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK + K G L++ V GCVA EG+ I R+P V++V GPQT +RLP ++++ Sbjct: 63 LGRWKKLKAN--KPG--LVIGVGGCVASQEGDNIRTRAPYVDIVFGPQTLHRLPTMIKQV 118 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G+ VD + +KF+ L R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 QEGRGAQVDVAFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L GV E+ LLGQNVNA+RG DG CTF++LL ++ I G+ R Sbjct: 174 VSRPLDDVLYEIAQLAQQGVREVNLLGQNVNAYRGPTFDGGICTFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + +D +I+ + D ++ +LHLPVQSGSDRIL M R HT EY+ I R+ Sbjct: 234 IRYTTSHPIEFTDDIIEVYKDTPEVVSFLHLPVQSGSDRILTMMKRPHTVLEYKSKIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPDI ISSDFIVGFP ETD+DF ATM L+++I + +FSF YSPR GTP +++ + V Sbjct: 294 RAARPDITISSDFIVGFPNETDEDFEATMKLIEEINFDMSFSFIYSPRPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441 D VK RL LQ + Q + A +G +L+E K + +L GR+ + V Sbjct: 354 DMEVKKARLTRLQHVINNQSMQIGRAMLGSTQRILVEGPSKLDPMQLCGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + IG V IT+V+ ++L G+ + Sbjct: 414 GPHTLIGGFADVEITEVRPNSLRGKFL 440 >gi|226939225|ref|YP_002794296.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Laribacter hongkongensis HLHK9] gi|226714149|gb|ACO73287.1| MiaB [Laribacter hongkongensis HLHK9] Length = 443 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 290/448 (64%), Gaps = 12/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ ++ + +S DDAD+I+ NTC +REKA EKV+S Sbjct: 2 KKLYIKTFGCQMNEYDSDKMADVLGLAEEIVKTDSPDDADIILFNTCSVREKAQEKVFSD 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR+R LK +R DL++ V GCVA EG+ I++R+P V+VV GPQT +RLP+L+ +R Sbjct: 62 LGRVRPLKEAR----PDLIIGVGGCVASQEGDTIVKRAPYVDVVFGPQTLHRLPQLISQR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G VD + +KF+ L R G AF+++ EGC K+CTFCVVPYTRG E Sbjct: 118 RESGAAQVDISFPEIEKFDHLPPA-----RVEGAAAFVSVMEGCSKYCTFCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L+ V+ E L GV EITLLGQNVNA+RG DGE F+ LL + EI G+ R Sbjct: 173 VSRPLNDVLTEVAGLAQQGVKEITLLGQNVNAYRGAMADGEIADFACLLECVHEIPGVER 232 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHPR+ + +I + L L+ +LHLPVQSG+DR+L +M R +TA EY+ II ++ Sbjct: 233 IRFTTSHPREFTPRIIDCYARLPKLVSHLHLPVQSGADRVLAAMKRGYTALEYKSIIRKL 292 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R++RPD+ +SSDFIVGFPGETD+DF T LV+++ + +F F YSPR GTP +++ + Sbjct: 293 RAIRPDLCLSSDFIVGFPGETDEDFEKTRKLVEELEFDASFVFIYSPRPGTPAADLPDDT 352 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441 VK +RL L + L + N + VG + VL+E ++ +L RS + V Sbjct: 353 PHEVKVKRLQTLTELLDRKTFEINQSMVGTVQTVLVEGISRRDSNELAARSANNRIVNFV 412 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469 + IG +++V IT+ ++ GE++ Sbjct: 413 GQPRLIGQMVEVVITEALRHSVRGEILT 440 >gi|229890671|sp|A4VQY3|MIAB_PSEU5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 437 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 206/448 (45%), Positives = 287/448 (64%), Gaps = 18/448 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F++++GCQMN YDS RM D+ Q E + +AD+I+LNTC IREKA EKV+S Sbjct: 3 RKLFIETHGCQMNEYDSSRMVDLLGEHQAMEITENPAEADVILLNTCSIREKAQEKVFSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK ++ L++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELK----QDNPQLVIGVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+RL R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RTTRTPQVDISFPEIEKFDRLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L+ V+ E L +NGV E+TLLGQNVN +R G D F+DLL++++ I G+ R Sbjct: 174 VSRPLADVLAEIVHLAENGVKEVTLLGQNVNGYRHDGHD-----FADLLHAVAAIDGIGR 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD +I+AH D+ L+ YLHLPVQ+GSDRIL +M R HTA EY+ I R+ Sbjct: 229 IRYTTSHPLEFSDAIIQAHADIPQLVKYLHLPVQAGSDRILAAMKRNHTALEYKSRIRRL 288 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++ PDI ISSDFIVGFPGETD DF TM L++ +G+ ++SF YS R GTP +++ + Sbjct: 289 KAAVPDILISSDFIVGFPGETDKDFEQTMKLIEDVGFDFSYSFVYSARPGTPAADLADDT 348 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E VK +RL LQ+++ +Q + VG +L+ + K+ G L GR+ + V Sbjct: 349 PEEVKKQRLAILQQRINQQGFENSRRMVGTTQRILVSDYSKKDPGMLQGRTEHNRIVNFR 408 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG + V I D +L G L+ Sbjct: 409 CDNPRLIGQFVDVHIDDALPHSLRGSLL 436 >gi|325920324|ref|ZP_08182261.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas gardneri ATCC 19865] gi|325549186|gb|EGD20103.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas gardneri ATCC 19865] Length = 489 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 206/463 (44%), Positives = 297/463 (64%), Gaps = 14/463 (3%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHI 72 V++ +V + ++K++GCQMN YDS +M D+ S+G E ++ +DAD++++NTC I Sbjct: 25 VARPAAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSI 84 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQ 131 REKA EKV+S LGR R LK SR K GG +++ V GCVA EGE I++R+P V++V GPQ Sbjct: 85 REKAQEKVFSQLGRWRLLKESRHKAGGTPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQ 144 Query: 132 TYYRLPELLE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 T +RLPEL+ R GK VD + +KF+RL R G +AF++I EGC K+C Sbjct: 145 TLHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYC 199 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FS 248 +FCVVPYTRG E+SR V+ E +L GV EI LLGQNVNA+RG ++ Sbjct: 200 SFCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYA 259 Query: 249 DL---LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 DL + ++++I G+ R+R+TTSHP + SD L+ A+ D+ L YLHLPVQ+GSDRIL + Sbjct: 260 DLGLLIRTIAQIDGVGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSA 319 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R +TA E++ I ++R+VRPDI+ISSDFIVGFPGET+ DF TM L++ +G+ Q+FSF Sbjct: 320 MKRGYTALEFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSF 379 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KE 424 YS R GTP S++ + + VK RL LQ ++ + + VG + VL+E ++ Sbjct: 380 IYSRRPGTPASDLQDDTPDAVKQARLARLQAQINAHATRISQSMVGSVQRVLVEGPSRRD 439 Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 +L G+S ++ V IG + V IT+ ++L G + Sbjct: 440 PNELTGKSENMRPVNFPGNARLIGQFVDVVITEAMSNSLRGRI 482 >gi|254496551|ref|ZP_05109420.1| hypothetical protein LDG_0201 [Legionella drancourtii LLAP12] gi|254354230|gb|EET12896.1| hypothetical protein LDG_0201 [Legionella drancourtii LLAP12] Length = 447 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 201/447 (44%), Positives = 290/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K+ GCQMN YDS +M ++ S G + + +++AD+I+LNTC IREKA EKV+S Sbjct: 3 KKLYIKTNGCQMNEYDSSKMAEVLLESHGLVKTDQVEEADVILLNTCSIREKAQEKVFSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LG+ R K + +++ V GCVA EG +I++R+P V++V GPQT +RLP +L ER Sbjct: 63 LGQWREYK----AKNPHVVIGVGGCVASQEGADIVKRAPFVDLVFGPQTLHRLPAMLNER 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K VVD + +KF+ L R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 IEKKKAVVDISFPEIEKFDHLPA-----PRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR V+ E L GV EI LLGQNVN +RGK +G+ + L++ ++ ++G+ R Sbjct: 174 ISRPFDDVLAECYHLATQGVREINLLGQNVNDYRGKMENGDIADLALLIHYIAALEGIGR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP SD LI A+ ++ L +LHLPVQSGSDRIL M R +TA E++ I ++ Sbjct: 234 IRFTTSHPLAFSDNLINAYAEVPELANHLHLPVQSGSDRILGLMKRGYTALEFKSKIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R VRPDI +S+D IVGFPGETD DF+ATMDLV +IG+ +FSF YSPR GTP +N++++ Sbjct: 294 RKVRPDIRLSTDIIVGFPGETDKDFQATMDLVHEIGFDTSFSFIYSPRPGTPAANLVDET 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441 VK +RL LQ +L Q ++ + +G +L+ H K+ +L GR+ + V + Sbjct: 354 PLEVKKQRLQILQSRLLLQASRYSQSMIGSTQRILVTGHSKKDSQQLSGRTECNRVVNFD 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + H IG ++V+I D ++L G LV Sbjct: 414 APPHLIGQFVEVQINDALPNSLRGRLV 440 >gi|238755076|ref|ZP_04616424.1| hypothetical protein yruck0001_21560 [Yersinia ruckeri ATCC 29473] gi|238706780|gb|EEP99149.1| hypothetical protein yruck0001_21560 [Yersinia ruckeri ATCC 29473] Length = 474 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/448 (45%), Positives = 291/448 (64%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GYE + ++ADL++LNTC IREKA EKV++ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLASTHGYELTDVPEEADLLLLNTCSIREKAQEKVFAL 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK + + L++ V GCVA EG+ I +R+P V+V+ GPQT +RLPE+L Sbjct: 63 LGRWKQLKATNPQ----LVIGVGGCVASQEGDHIRQRAPCVDVIFGPQTLHRLPEMLNHV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G +VD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG Sbjct: 119 -LGTHSPIVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR + V+ E +L GV E+ LLGQNVNA+RG DG+ C F++LL ++ I G+ Sbjct: 173 EVSRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICRFAELLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RP+I ISSDFIVGFPGE+ DF TM LV ++ + ++SF YS R GTP +++ + Sbjct: 293 LRKARPNIHISSDFIVGFPGESQADFEQTMTLVAEVNFDMSYSFIYSSRPGTPAADLPDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440 V ++ K +RL LQ+++ +Q ++++ A VG + VL+E K+ +L GR+ + V Sbjct: 353 VSDDEKKQRLHALQERITQQAMNYSRAMVGTVQRVLVEGTSRKDVMELAGRTENNRIVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G +V Sbjct: 413 VGTPEMIGTFVDVNIVDVYTNSLRGVVV 440 >gi|319764320|ref|YP_004128257.1| tRNA-i(6)a37 thiotransferase enzyme miab [Alicycliphilus denitrificans BC] gi|330826382|ref|YP_004389685.1| MiaB family RNA modification protein [Alicycliphilus denitrificans K601] gi|317118881|gb|ADV01370.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alicycliphilus denitrificans BC] gi|329311754|gb|AEB86169.1| RNA modification enzyme, MiaB family [Alicycliphilus denitrificans K601] Length = 449 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/449 (44%), Positives = 291/449 (64%), Gaps = 15/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ +Q Y+ ++ ++ADLI+ NTC +REKA EKV+S Sbjct: 3 KKVFIKTFGCQMNEYDSAKMADVLGAAQDYQSTDNPEEADLILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+++LK + L+ V GCVA EGEEI++R+P V+VV GPQT +RLPELL R Sbjct: 63 LGRVKHLKEKGV------LIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPELLSAR 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 117 EKQHKPQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L D GV E+TLLGQNVNA+ G G EK F+ LL ++EI G+ Sbjct: 172 VSRPFEDVLVEVAGLADQGVKEVTLLGQNVNAYLGTMGDTAEKADFALLLEYVAEIPGIE 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP + + LI+A+ + L+ +LHLPVQ GSDRIL +M R +TA EY+ + + Sbjct: 232 RIRYTTSHPNEFTPRLIEAYARIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRK 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 ++++RP +A+SSDFIVGFPGET++DF+ M L+ + + +FSF +SPR GTP +N+ + Sbjct: 292 LKAIRPGMAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDD 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 +VK RL LQ + + + VG + +L+E K + G+L+GR+ + V Sbjct: 352 TPHDVKLRRLQELQAVINRNILEISQERVGTVQRLLVEGVSKRDAGELMGRTECNRVVNF 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 + IG +I VRIT+ + TL GE+ Sbjct: 412 PGRERLIGQMIDVRITEARTYTLRGEVAT 440 >gi|170767811|ref|ZP_02902264.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia albertii TW07627] gi|170123299|gb|EDS92230.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia albertii TW07627] Length = 474 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EG+ I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG TF+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLITDVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VSEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440 >gi|332160874|ref|YP_004297451.1| putative tRNA-thiotransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665104|gb|ADZ41748.1| putative tRNA-thiotransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861444|emb|CBX71668.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Yersinia enterocolitica W22703] Length = 474 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/447 (44%), Positives = 285/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTEIPEEADLLLLNTCSIREKAQEKVFSL 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + LK ++ +++ V GCVA EGE + +R+P V+V+ GPQT +RLPE++ Sbjct: 63 LGHWKLLK----EKNPGIIIGVGGCVASQEGEHLRQRAPCVDVIFGPQTLHRLPEMINHV 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 QGTHSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F+DLL ++ I G+ R Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFADLLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGET DF TM LV + + ++SF YSPR GTP +++ + V Sbjct: 294 RQARPDIQISSDFIIGFPGETQQDFEQTMKLVADVRFDTSYSFIYSPRPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + VG + +L+E ++ +L GR+ + V Sbjct: 354 SEEEKKQRLHILQQRITQQAMEISREMVGTVQRILVEGTSRKNVMELAGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV S+L G L+ Sbjct: 414 GTPEMIGKFVDVEIVDVYASSLRGILL 440 >gi|74311197|ref|YP_309616.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shigella sonnei Ss046] gi|82543105|ref|YP_407052.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shigella boydii Sb227] gi|123742024|sp|Q324N4|MIAB_SHIBS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|123746029|sp|Q3Z4D1|MIAB_SHISS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|73854674|gb|AAZ87381.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81244516|gb|ABB65224.1| conserved hypothetical protein [Shigella boydii Sb227] gi|320174711|gb|EFW49843.1| tRNA-i(6)A37 methylthiotransferase [Shigella dysenteriae CDC 74-1112] gi|323163924|gb|EFZ49733.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella sonnei 53G] gi|332097757|gb|EGJ02731.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella boydii 3594-74] Length = 474 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGSTGSFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440 >gi|191168679|ref|ZP_03030459.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli B7A] gi|309795469|ref|ZP_07689886.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 145-7] gi|190901271|gb|EDV61040.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli B7A] gi|308120844|gb|EFO58106.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 145-7] Length = 474 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/447 (44%), Positives = 292/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG E Sbjct: 119 RGYRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ R Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ V Sbjct: 294 RAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 354 PEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 414 GTPDMIGKFVDVEITDVYPNSLRGKVV 440 >gi|320178452|gb|EFW53420.1| tRNA-i(6)A37 methylthiotransferase [Shigella boydii ATCC 9905] Length = 474 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440 >gi|269102017|ref|ZP_06154714.1| tRNA-i(6)A37 methylthiotransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161915|gb|EEZ40411.1| tRNA-i(6)A37 methylthiotransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 474 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 203/447 (45%), Positives = 292/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + G+E ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEDPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ K+ G L++ V GCVA EG+ I +R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKD---KKPG-LVIGVGGCVATQEGDSIRQRAPYVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + V+D + +KF+ L R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QSTEAPVMDISFPEIEKFDSLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L GV E+ LLGQNVNA+RG DGE TF++LL ++ I G+ R Sbjct: 174 VSRPLDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATYDGEIATFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ I ++ Sbjct: 234 IRYTTSHPIEFTDDIIEVYQDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSKIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGE+D DF+ TM L+ + + +FSF +SPR GTP ++ + Sbjct: 294 RKARPDITISSDFIVGFPGESDQDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E VK ERL LQ+++ Q + F+ +G +L+E K+ +L GR+ + V Sbjct: 354 TEEVKKERLYELQQQINSQAMRFSRQMLGTEQRILVEGPSKKNVMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GEL+ Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGELI 440 >gi|332281803|ref|ZP_08394216.1| MiaB protein [Shigella sp. D9] gi|332104155|gb|EGJ07501.1| MiaB protein [Shigella sp. D9] Length = 486 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 15 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 74 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 75 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 130 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 131 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 184 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 185 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 244 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 245 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 304 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 305 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 364 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 365 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 424 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 425 EGTPDMIGKFVDVEITDVYPNSLRGKVV 452 >gi|238791657|ref|ZP_04635295.1| hypothetical protein yinte0001_28150 [Yersinia intermedia ATCC 29909] gi|238729273|gb|EEQ20789.1| hypothetical protein yinte0001_28150 [Yersinia intermedia ATCC 29909] Length = 474 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/446 (44%), Positives = 283/446 (63%), Gaps = 12/446 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTEIPEEADLLLLNTCSIREKAQEKVFSL 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + LK + +L++ V GCVA EGE + +R+P V+V+ GPQT +RLPE++ Sbjct: 63 LGHWKLLK----AKNPNLIIGVGGCVASQEGEHLRQRAPCVDVIFGPQTLHRLPEMINHV 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 QGSHSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 174 ISRPSDDILFEIAQLASQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGET DF T+ LV I + ++SF YSPR GTP +++ + V Sbjct: 294 RQARPDIQISSDFIIGFPGETQQDFEQTIKLVADIHFDTSYSFIYSPRPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + VG + +L+E ++ +L GR+ + V Sbjct: 354 SEEEKKQRLHILQQRITQQAMEISREMVGSVQRILVEGTSRKSAVELAGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467 IG + V I V S+L G L Sbjct: 414 GTPEMIGKFVDVEIVGVYASSLRGIL 439 >gi|15829953|ref|NP_308726.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli O157:H7 str. Sakai] gi|16128644|ref|NP_415194.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli str. K-12 substr. MG1655] gi|26246637|ref|NP_752677.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli CFT073] gi|82775938|ref|YP_402285.1| hypothetical protein SDY_0597 [Shigella dysenteriae Sd197] gi|89107530|ref|AP_001310.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli str. K-12 substr. W3110] gi|110640883|ref|YP_668611.1| MiaB protein [Escherichia coli 536] gi|157157673|ref|YP_001461833.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli E24377A] gi|157160149|ref|YP_001457467.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli HS] gi|168752231|ref|ZP_02777253.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4113] gi|168758304|ref|ZP_02783311.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4401] gi|168764662|ref|ZP_02789669.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4501] gi|168767108|ref|ZP_02792115.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4486] gi|168777598|ref|ZP_02802605.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4196] gi|168779152|ref|ZP_02804159.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4076] gi|168786511|ref|ZP_02811518.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC869] gi|168802429|ref|ZP_02827436.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC508] gi|170020982|ref|YP_001725936.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli ATCC 8739] gi|170080341|ref|YP_001729661.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli str. K-12 substr. DH10B] gi|170679912|ref|YP_001742780.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli SMS-3-5] gi|188492519|ref|ZP_02999789.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 53638] gi|191173977|ref|ZP_03035495.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli F11] gi|193063365|ref|ZP_03044455.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli E22] gi|193069098|ref|ZP_03050056.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli E110019] gi|194429753|ref|ZP_03062269.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli B171] gi|194434466|ref|ZP_03066727.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella dysenteriae 1012] gi|194439882|ref|ZP_03071945.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 101-1] gi|195939398|ref|ZP_03084780.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli O157:H7 str. EC4024] gi|208808891|ref|ZP_03251228.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4206] gi|208814878|ref|ZP_03256057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4045] gi|208823289|ref|ZP_03263607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4042] gi|209395752|ref|YP_002269297.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4115] gi|217324477|ref|ZP_03440561.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. TW14588] gi|218549762|ref|YP_002383553.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia fergusonii ATCC 35469] gi|218553203|ref|YP_002386116.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli IAI1] gi|218694100|ref|YP_002401767.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli 55989] gi|218699025|ref|YP_002406654.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli IAI39] gi|218703994|ref|YP_002411513.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli UMN026] gi|227884364|ref|ZP_04002169.1| 2-methylthioadenine synthase [Escherichia coli 83972] gi|238899938|ref|YP_002925734.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli BW2952] gi|253774355|ref|YP_003037186.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160740|ref|YP_003043848.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli B str. REL606] gi|254791824|ref|YP_003076661.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli O157:H7 str. TW14359] gi|256020613|ref|ZP_05434478.1| isopentenyl-adenosine A37 tRNA methylthiolase [Shigella sp. D9] gi|256023728|ref|ZP_05437593.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia sp. 4_1_40B] gi|260842887|ref|YP_003220665.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli O103:H2 str. 12009] gi|260853912|ref|YP_003227803.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli O26:H11 str. 11368] gi|260866809|ref|YP_003233211.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli O111:H- str. 11128] gi|261224129|ref|ZP_05938410.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli O157:H7 str. FRIK2000] gi|261257823|ref|ZP_05950356.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli O157:H7 str. FRIK966] gi|291281610|ref|YP_003498428.1| hypothetical protein G2583_0824 [Escherichia coli O55:H7 str. CB9615] gi|293403922|ref|ZP_06647916.1| RNA modification enzyme [Escherichia coli FVEC1412] gi|293413956|ref|ZP_06656605.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B185] gi|293418774|ref|ZP_06661209.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B088] gi|298379697|ref|ZP_06989302.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB [Escherichia coli FVEC1302] gi|300817816|ref|ZP_07098030.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 107-1] gi|300823020|ref|ZP_07103154.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 119-7] gi|300901175|ref|ZP_07119279.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 198-1] gi|300907841|ref|ZP_07125457.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 84-1] gi|300931599|ref|ZP_07146911.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 187-1] gi|300937869|ref|ZP_07152662.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 21-1] gi|300951164|ref|ZP_07165027.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 116-1] gi|300959238|ref|ZP_07171313.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 175-1] gi|300989977|ref|ZP_07179053.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 45-1] gi|300996640|ref|ZP_07181498.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 200-1] gi|301025204|ref|ZP_07188775.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 69-1] gi|301028854|ref|ZP_07192030.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 196-1] gi|301049854|ref|ZP_07196792.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 185-1] gi|301302146|ref|ZP_07208279.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 124-1] gi|301643922|ref|ZP_07243949.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 146-1] gi|307137277|ref|ZP_07496633.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli H736] gi|307312622|ref|ZP_07592254.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli W] gi|309786323|ref|ZP_07680949.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella dysenteriae 1617] gi|312970738|ref|ZP_07784919.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 1827-70] gi|331641164|ref|ZP_08342299.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H736] gi|331651675|ref|ZP_08352694.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli M718] gi|331662028|ref|ZP_08362951.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA143] gi|331667016|ref|ZP_08367890.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA271] gi|331672195|ref|ZP_08372987.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA280] gi|331676323|ref|ZP_08377035.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H591] gi|331682080|ref|ZP_08382704.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H299] gi|83288201|sp|P0AEI3|MIAB_ECO57 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|83288202|sp|P0AEI2|MIAB_ECOL6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|83288203|sp|P0AEI1|MIAB_ECOLI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|123049384|sp|Q0TK19|MIAB_ECOL5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|123742173|sp|Q32IR1|MIAB_SHIDS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890518|sp|A7ZJ54|MIAB_ECO24 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890520|sp|B7L9K8|MIAB_ECO55 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890521|sp|B5YQL3|MIAB_ECO5E RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890522|sp|B7NM12|MIAB_ECO7I RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890524|sp|B7M5I8|MIAB_ECO8A RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890525|sp|B1X656|MIAB_ECODH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890526|sp|A7ZXT0|MIAB_ECOHS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890528|sp|B1IYE7|MIAB_ECOLC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890529|sp|B7N9R6|MIAB_ECOLU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890531|sp|B1LLB3|MIAB_ECOSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890532|sp|B7LKU3|MIAB_ESCF3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|26107036|gb|AAN79220.1|AE016757_124 Hypothetical protein yleA [Escherichia coli CFT073] gi|1778580|gb|AAB40863.1| HI0019 homolog [Escherichia coli] gi|1786882|gb|AAC73762.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli str. K-12 substr. MG1655] gi|13360157|dbj|BAB34122.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|81240086|gb|ABB60796.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|85674736|dbj|BAE76357.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli str. K12 substr. W3110] gi|110342475|gb|ABG68712.1| MiaB protein [Escherichia coli 536] gi|157065829|gb|ABV05084.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli HS] gi|157079703|gb|ABV19411.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli E24377A] gi|169755910|gb|ACA78609.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli ATCC 8739] gi|169888176|gb|ACB01883.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli str. K-12 substr. DH10B] gi|170517630|gb|ACB15808.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli SMS-3-5] gi|187767200|gb|EDU31044.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4196] gi|188013873|gb|EDU51995.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4113] gi|188487718|gb|EDU62821.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 53638] gi|189002755|gb|EDU71741.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4076] gi|189354844|gb|EDU73263.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4401] gi|189363501|gb|EDU81920.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4486] gi|189365364|gb|EDU83780.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4501] gi|189373737|gb|EDU92153.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC869] gi|189375569|gb|EDU93985.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC508] gi|190905753|gb|EDV65374.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli F11] gi|192930949|gb|EDV83553.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli E22] gi|192957642|gb|EDV88087.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli E110019] gi|194412234|gb|EDX28540.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli B171] gi|194417317|gb|EDX33425.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella dysenteriae 1012] gi|194421176|gb|EDX37200.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 101-1] gi|208728692|gb|EDZ78293.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4206] gi|208731526|gb|EDZ80214.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4045] gi|208737482|gb|EDZ85166.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4042] gi|209157152|gb|ACI34585.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. EC4115] gi|209776858|gb|ACI86741.1| hypothetical protein ECs0699 [Escherichia coli] gi|209776860|gb|ACI86742.1| hypothetical protein ECs0699 [Escherichia coli] gi|209776862|gb|ACI86743.1| hypothetical protein ECs0699 [Escherichia coli] gi|209776864|gb|ACI86744.1| hypothetical protein ECs0699 [Escherichia coli] gi|209776866|gb|ACI86745.1| hypothetical protein ECs0699 [Escherichia coli] gi|217320698|gb|EEC29122.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli O157:H7 str. TW14588] gi|218350832|emb|CAU96528.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli 55989] gi|218357303|emb|CAQ89938.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia fergusonii ATCC 35469] gi|218359971|emb|CAQ97515.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli IAI1] gi|218369011|emb|CAR16765.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli IAI39] gi|218431091|emb|CAR11967.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli UMN026] gi|227838450|gb|EEJ48916.1| 2-methylthioadenine synthase [Escherichia coli 83972] gi|238861566|gb|ACR63564.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli BW2952] gi|242376435|emb|CAQ31137.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB [Escherichia coli BL21(DE3)] gi|253325399|gb|ACT30001.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972641|gb|ACT38312.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli B str. REL606] gi|253976835|gb|ACT42505.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli BL21(DE3)] gi|254591224|gb|ACT70585.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli O157:H7 str. TW14359] gi|257752561|dbj|BAI24063.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli O26:H11 str. 11368] gi|257758034|dbj|BAI29531.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli O103:H2 str. 12009] gi|257763165|dbj|BAI34660.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli O111:H- str. 11128] gi|260450172|gb|ACX40594.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli DH1] gi|284920461|emb|CBG33522.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli 042] gi|290761483|gb|ADD55444.1| UPF0004 protein yleA [Escherichia coli O55:H7 str. CB9615] gi|291325302|gb|EFE64717.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B088] gi|291428508|gb|EFF01533.1| RNA modification enzyme [Escherichia coli FVEC1412] gi|291434014|gb|EFF06987.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli B185] gi|298279395|gb|EFI20903.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB [Escherichia coli FVEC1302] gi|299878159|gb|EFI86370.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 196-1] gi|300298388|gb|EFJ54773.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 185-1] gi|300304469|gb|EFJ58989.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 200-1] gi|300314167|gb|EFJ63951.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 175-1] gi|300355389|gb|EFJ71259.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 198-1] gi|300396156|gb|EFJ79694.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 69-1] gi|300400473|gb|EFJ84011.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 84-1] gi|300407252|gb|EFJ90790.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 45-1] gi|300449567|gb|EFK13187.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 116-1] gi|300457112|gb|EFK20605.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 21-1] gi|300460623|gb|EFK24116.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 187-1] gi|300524369|gb|EFK45438.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 119-7] gi|300529513|gb|EFK50575.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 107-1] gi|300842698|gb|EFK70458.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 124-1] gi|301077692|gb|EFK92498.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 146-1] gi|306907324|gb|EFN37829.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli W] gi|307552525|gb|ADN45300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli ABU 83972] gi|308925717|gb|EFP71198.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella dysenteriae 1617] gi|309700899|emb|CBJ00196.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli ETEC H10407] gi|310337387|gb|EFQ02525.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 1827-70] gi|315059915|gb|ADT74242.1| isopentenyl-adenosine A37 tRNA methylthiolase [Escherichia coli W] gi|315135327|dbj|BAJ42486.1| hypothetical protein ECDH1ME8569_0630 [Escherichia coli DH1] gi|315255031|gb|EFU34999.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 85-1] gi|315292085|gb|EFU51437.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 153-1] gi|315616417|gb|EFU97034.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 3431] gi|320193067|gb|EFW67707.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli O157:H7 str. EC1212] gi|320643515|gb|EFX12685.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli O157:H- str. 493-89] gi|320648850|gb|EFX17477.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli O157:H- str. H 2687] gi|320660116|gb|EFX27646.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli O55:H7 str. USDA 5905] gi|320664914|gb|EFX32049.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli O157:H7 str. LSU-61] gi|323153611|gb|EFZ39859.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli EPECa14] gi|323158884|gb|EFZ44895.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli E128010] gi|323179860|gb|EFZ65417.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 1180] gi|323184984|gb|EFZ70351.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli 1357] gi|323379521|gb|ADX51789.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli KO11] gi|323938422|gb|EGB34676.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli E1520] gi|323943075|gb|EGB39234.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli E482] gi|323945136|gb|EGB41198.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H120] gi|323963229|gb|EGB58797.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H489] gi|323967607|gb|EGB63023.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli M863] gi|323972115|gb|EGB67329.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA007] gi|324006281|gb|EGB75500.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 57-2] gi|324010389|gb|EGB79608.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 60-1] gi|324114782|gb|EGC08750.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia fergusonii B253] gi|324116735|gb|EGC10650.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli E1167] gi|325498160|gb|EGC96019.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia fergusonii ECD227] gi|326341412|gb|EGD65204.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli O157:H7 str. 1044] gi|326345808|gb|EGD69547.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli O157:H7 str. 1125] gi|327254346|gb|EGE65968.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli STEC_7v] gi|331037962|gb|EGI10182.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H736] gi|331049953|gb|EGI22011.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli M718] gi|331060450|gb|EGI32414.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA143] gi|331066240|gb|EGI38124.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA271] gi|331070662|gb|EGI42025.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TA280] gi|331076381|gb|EGI47663.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H591] gi|331080759|gb|EGI51933.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli H299] gi|332094333|gb|EGI99384.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella boydii 5216-82] Length = 474 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440 >gi|229891223|sp|B2SW86|MIAB_XANOP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 484 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 206/463 (44%), Positives = 299/463 (64%), Gaps = 19/463 (4%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHI 72 V++ +V + ++K++GCQMN YDS +M D+ S+G E ++ ++AD++++NTC I Sbjct: 25 VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 84 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 REKA EKV+S LGR + LK G +++ V GCVA EGE I++R+P V++V GPQT Sbjct: 85 REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 140 Query: 133 YYRLPELLERAR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 +RLPEL+ RAR GK VD + +KF+RL R G +AF++I EGC K+C Sbjct: 141 LHRLPELI-RARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYC 194 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLD-GEKCTFS 248 +FCVVPYTRG E+SR V+ E +L GV EI LLGQNVNA+RG G D G+ ++ Sbjct: 195 SFCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDPAQYA 254 Query: 249 DL---LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 DL + ++++I+G+ R+R+TTSHP + SD L+ A+ D+ L LHLPVQ+GSDRIL + Sbjct: 255 DLGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANCLHLPVQAGSDRILSA 314 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R +TA E++ I ++R+VRPDI+ISSDFIVGFPGET+ DF TM L++ +G+ Q+FSF Sbjct: 315 MKRGYTALEFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSF 374 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KE 424 YS R GTP S++ + E VK RL LQ + S + + VG + VL+E ++ Sbjct: 375 VYSRRPGTPASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRD 434 Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 +L G+S ++ V IG + V IT+ ++L G + Sbjct: 435 PNELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477 >gi|317491143|ref|ZP_07949579.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920690|gb|EFV42013.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enterobacteriaceae bacterium 9_2_54FAA] Length = 474 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 196/447 (43%), Positives = 291/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS +M D+ S G+E ++ ++AD+++LNTC IREKA EKV+ Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLGSTHGFELTDNAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK + ++++ V GCVA EG+ + +R+ V++V GPQT +RLPE++ + Sbjct: 63 LGRWKLLKEA----NPNVIIGVGGCVASQEGKLLRQRAHYVDIVFGPQTLHRLPEMINKV 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VVD + +KF+RL R G +AF++I EGC+K+CT+CVVPYTRG E Sbjct: 119 RGSKSPVVDVSFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E +L GV E+ LLGQNVNA+RG DG+ CTF++LL ++ I G+ R Sbjct: 174 VSRPADDVLFEIAQLAAQGVREVNLLGQNVNAYRGPSFDGDICTFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HT EY+ II ++ Sbjct: 234 IRFTTSHPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILNLMKRTHTVLEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGET +DF TM L+ ++ + ++SF +SPR GTP ++M + V Sbjct: 294 RKARPDILISSDFIIGFPGETQEDFEQTMKLIAEVNFDVSYSFVFSPRPGTPAADMADDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ ++ +Q S++ VG + +L+E ++ ++ GR+ + V Sbjct: 354 PEEEKKQRLYILQDRINQQAQSYSRKMVGTVQRILVEGISRKNVMEMSGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G + V IT+V+ ++L G LV Sbjct: 414 GSPELVGTFVDVEITEVRTNSLRGVLV 440 >gi|283784432|ref|YP_003364297.1| isopentenyl-adenosine A37 tRNA methylthiolase [Citrobacter rodentium ICC168] gi|282947886|emb|CBG87448.1| isopentenyl-adenosine A37 tRNA methylthiolase [Citrobacter rodentium ICC168] Length = 474 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 292/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EG+ I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GNRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ ++ +Q ++++ +G I +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQDRINQQAMAWSRRMLGTIQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGSPEMIGKFVDVEITDVWTNSLRGKVV 440 >gi|320654434|gb|EFX22481.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 474 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRTEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440 >gi|239813975|ref|YP_002942885.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Variovorax paradoxus S110] gi|239800552|gb|ACS17619.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Variovorax paradoxus S110] Length = 454 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 203/449 (45%), Positives = 287/449 (63%), Gaps = 15/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ + QGYE ++D+ADLI+ NTC +REKA EKV+S Sbjct: 3 KKVFIKTFGCQMNEYDSDKMADVLHAAQGYEPTQNVDEADLILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR+++LK +K G V GCVA EGE I+ R+P V++V GPQT +RLPE+L +R Sbjct: 63 LGRVKHLKAKGVKIG------VGGCVASQEGEAIIARAPYVDIVFGPQTLHRLPEMLNDR 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G TAF++I EGC K+C++CVVPYTRG E Sbjct: 117 ERLDRPQVDISFPEIEKFDHLPPA-----RVDGATAFVSIMEGCSKYCSYCVVPYTRGEE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 ++R L V+ E L D GV E+TLLGQNVNA+RG+ G E F+ L+ ++EI G+ Sbjct: 172 VNRPLDDVLVEIAGLADQGVREVTLLGQNVNAYRGRMGDTAEIADFALLIEYVAEIPGIE 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP + + LI+A+ + L+ +LHLPVQ GSDRIL +M R +TA EY+ + + Sbjct: 232 RIRYTTSHPNEFTPRLIEAYAKVPQLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRK 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RP++A+SSDFIVGFPGETD+DF M L+D + +FSF +SPR GTP + + + Sbjct: 292 LRAIRPELALSSDFIVGFPGETDEDFAKMMKLIDDCQFDNSFSFIFSPRPGTPAAALQDD 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440 VK RL LQ+ + F DA VG VL+E K+ +L+GR+ + V Sbjct: 352 TPHAVKLARLQTLQRVIDGNVRRFGDALVGTTQCVLVEGASRKDANELMGRTACNRVVNF 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 +G + +RIT TL GE+ Sbjct: 412 EGDARLVGQMADLRITRSLAYTLRGEVAT 440 >gi|24112041|ref|NP_706551.1| hypothetical protein SF0621 [Shigella flexneri 2a str. 301] gi|30062152|ref|NP_836323.1| hypothetical protein S0643 [Shigella flexneri 2a str. 2457T] gi|110804691|ref|YP_688211.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shigella flexneri 5 str. 8401] gi|209917923|ref|YP_002292007.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli SE11] gi|300920521|ref|ZP_07136947.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 115-1] gi|81723658|sp|Q83LY3|MIAB_SHIFL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|122957570|sp|Q0T6S0|MIAB_SHIF8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890530|sp|B6HYN0|MIAB_ECOSE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|24050864|gb|AAN42258.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30040397|gb|AAP16129.1| hypothetical protein S0643 [Shigella flexneri 2a str. 2457T] gi|110614239|gb|ABF02906.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|209911182|dbj|BAG76256.1| conserved hypothetical protein [Escherichia coli SE11] gi|281600005|gb|ADA72989.1| protein yleA [Shigella flexneri 2002017] gi|300412460|gb|EFJ95770.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 115-1] gi|313649693|gb|EFS14117.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri 2a str. 2457T] gi|320198212|gb|EFW72816.1| tRNA-i(6)A37 methylthiotransferase [Escherichia coli EC4100B] gi|324016069|gb|EGB85288.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 117-3] gi|332760967|gb|EGJ91255.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri 4343-70] gi|332761234|gb|EGJ91520.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri 2747-71] gi|332768235|gb|EGJ98420.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri 2930-71] gi|333007424|gb|EGK26904.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri VA-6] gi|333007943|gb|EGK27419.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri K-218] gi|333010077|gb|EGK29512.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri K-272] gi|333020908|gb|EGK40168.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri K-227] gi|333021472|gb|EGK40722.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri K-304] Length = 474 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440 >gi|292898859|ref|YP_003538228.1| MiaB protein (methylthiolation of isopentenylated A37 derivatives I rRNA) [Erwinia amylovora ATCC 49946] gi|291198707|emb|CBJ45816.1| MiaB protein (methylthiolation of isopentenylated A37 derivatives I rRNA) [Erwinia amylovora ATCC 49946] Length = 474 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY +DAD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFGL 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK + +L++ V GCVA EG +I +R+ V++V GPQT +RLPE++ Sbjct: 63 LGRWKKLKEA----NPNLIIGVGGCVASQEGAKIRQRASCVDIVFGPQTLHRLPEMINSV 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VVD + +KF+R+ R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 RGSKSPVVDVSFPEIEKFDRMP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R Sbjct: 174 VSRPADDILFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I+ + D L+ YLHLPVQSG+DRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPIEFTDDIIEVYRDTPELVSYLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + RPDI ISSDFI+GFPGET DF TM LV +I + ++SF YS R GTP + + + V Sbjct: 294 LAARPDIQISSDFIIGFPGETQADFEQTMKLVGEINFDTSYSFIYSARPGTPAAELPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K +RL LQ ++ +Q ++++ +G + +L+E ++ +L GR+ + V Sbjct: 354 SEDEKKQRLYVLQDRISQQAMAWSRRKLGTVQRILVEGTSRKNVMELSGRTECNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG + V+ITDV ++L G L+ Sbjct: 414 ATPDHIGKFVDVKITDVYANSLRGVLL 440 >gi|292487621|ref|YP_003530493.1| hypothetical protein EAMY_1135 [Erwinia amylovora CFBP1430] gi|291553040|emb|CBA20085.1| UPF0004 protein PA3980 [Erwinia amylovora CFBP1430] Length = 480 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY +DAD+++LNTC IREKA EKV+ Sbjct: 9 KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFGL 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK + +L++ V GCVA EG +I +R+ V++V GPQT +RLPE++ Sbjct: 69 LGRWKKLKEA----NPNLIIGVGGCVASQEGAKIRQRASCVDIVFGPQTLHRLPEMINSV 124 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VVD + +KF+R+ R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 125 RGSKSPVVDVSFPEIEKFDRMP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGEE 179 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R Sbjct: 180 VSRPADDILFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAIDGIDR 239 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I+ + D L+ YLHLPVQSG+DRIL M R HTA EY+ II ++ Sbjct: 240 IRFTTSHPIEFTDDIIEVYRDTPELVSYLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 299 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + RPDI ISSDFI+GFPGET DF TM LV +I + ++SF YS R GTP + + + V Sbjct: 300 LAARPDIQISSDFIIGFPGETQADFEQTMKLVGEINFDTSYSFIYSARPGTPAAELPDDV 359 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K +RL LQ ++ +Q ++++ +G + +L+E ++ +L GR+ + V Sbjct: 360 SEDEKKQRLYVLQDRISQQAMAWSRRKLGTVQRILVEGTSRKNVMELSGRTECNRVVNFE 419 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG + V+ITDV ++L G L+ Sbjct: 420 ATPDHIGKFVDVKITDVYANSLRGVLL 446 >gi|82703805|ref|YP_413371.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrosospira multiformis ATCC 25196] gi|123754233|sp|Q2Y5J2|MIAB_NITMU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|82411870|gb|ABB75979.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitrosospira multiformis ATCC 25196] Length = 474 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 207/450 (46%), Positives = 289/450 (64%), Gaps = 15/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ +Q E+ + AD+I+ NTC +REKA EKV+ Sbjct: 3 KKLYIKTFGCQMNEYDSKKMADVLRDAQHMEKTDDPAAADVILFNTCSVREKAQEKVFHD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+R+LK + DLL+ V GCVA EG EI++R+P V++V GPQT +RLP+++ R Sbjct: 63 LGRVRHLKAA----NPDLLIGVGGCVASQEGAEIVKRAPYVDLVFGPQTLHRLPQMISTR 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ VD + +KF+ L R GVTAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 QITGRPQVDISFPEIEKFDHLPPA-----RTEGVTAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK---GLDGEKCTFSDLLYSLSEIKG 259 ISR L ++ E L + GV E+TLLGQNVNA+RG+ +GE F+ LL L EI G Sbjct: 174 ISRPLDDILTEIAGLTNLGVKEVTLLGQNVNAYRGRMQYAEEGELADFALLLEYLHEIPG 233 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+RYTTSHPR+ + LI+A+ L+ ++HLPVQSGSDRIL +M R +T+ EY+ II Sbjct: 234 IERIRYTTSHPREFTPRLIEAYKASPKLVSHVHLPVQSGSDRILAAMKRGYTSLEYKSII 293 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R+R+ RPDI+I+SDFIVGFPGET+ DF ATM L++ + + +FSF YS R GTP + + Sbjct: 294 RRLRAARPDISITSDFIVGFPGETEADFEATMKLIEAVNFDGSFSFIYSSRPGTPAAGLE 353 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438 + VK ERL LQ+K+ Q + + VG VL+E K+ G+L GR+ + V Sbjct: 354 DTTPHQVKLERLQRLQEKVELQAQAISVRMVGTTQRVLVEGLSRKDPGELSGRTDNNRVV 413 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG +++IT TL GE V Sbjct: 414 NFPGSPEMIGKFAELKITAALSHTLRGENV 443 >gi|331001262|ref|ZP_08324888.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Parasutterella excrementihominis YIT 11859] gi|329568989|gb|EGG50785.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Parasutterella excrementihominis YIT 11859] Length = 441 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/447 (44%), Positives = 291/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS + + GYE + +++ADL+V NTC IREKA EKV+S Sbjct: 4 KKIYLKTFGCQMNEYDSGKIADIAKAAAGYEVTDDINEADLVVFNTCSIREKAQEKVFSD 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK ++ +L + V GCVA EG I+RR+P V+VV GPQT +RLPELLE+ Sbjct: 64 LGRVRELKKTK----PNLKIAVGGCVASQEGGNIVRRAPYVDVVFGPQTLHRLPELLEKN 119 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R VD + +KF+RL TAF++I EGC K+C++CVVPYTRG E Sbjct: 120 EKEHRPQVDISFPEIEKFDRLPTPHAD-----AATAFVSIMEGCSKYCSYCVVPYTRGEE 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + V+ E +L GV E+TLLGQNVNA+RG+G DGE F+ LL ++EI G+ R Sbjct: 175 FSRPVEDVLVEIAQLAAQGVKEVTLLGQNVNAYRGEGPDGEIVDFALLLEYVAEIDGIER 234 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP++ ++ LI+A+ + +L ++HLPVQ+GSDR+L M R +T EY+ II ++ Sbjct: 235 IRYTTSHPKEFTNRLIEAYRKIPILANHVHLPVQAGSDRVLAGMKRGYTILEYKSIIRKL 294 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R++RPDI+I++DFIVGFP ET++DF TM+L+ +I + +FSF YS R GTP + + + Sbjct: 295 RAIRPDISIATDFIVGFPNETEEDFEKTMNLIKEIKFDASFSFVYSKRPGTPAAELPDDT 354 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441 ++VK ERL LQ + + + VG + L+ K+ +GKL R+ + V N Sbjct: 355 PQSVKLERLQRLQALNTQHAQEISQSMVGSVQRCLVVGEAKKGEGKLSARTDNNRIVTFN 414 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++ ++I +V TL GELV Sbjct: 415 GPENLIGQMVNLKINEVYPHTLGGELV 441 >gi|310766988|gb|ADP11938.1| Putative tRNA-thiotransferase [Erwinia sp. Ejp617] Length = 480 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/447 (44%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY +DAD+++LNTC IREKA EKV+ Sbjct: 9 KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFGL 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK + D+++ V GCVA EG +I +R+ V++V GPQT +RLPE++ R Sbjct: 69 LGRWKKLKEA----NPDVIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMINRV 124 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VVD + +KF+R+ R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 125 RGTKSPVVDVSFPEIEKFDRMP-----EPRANGPTAFVSIMEGCNKYCTFCVVPYTRGEE 179 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E +L GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R Sbjct: 180 VSRPADDVLFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVATIDGIDR 239 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I+ + D L+ +LHLPVQSG+DRIL M R HTA EY+ II ++ Sbjct: 240 IRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 299 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + RPDI ISSDFI+GFPGE DF TM LV +I + ++SF YS R GTP +++ + V Sbjct: 300 LAARPDIQISSDFIIGFPGENQADFEQTMKLVGEINFDTSYSFIYSARPGTPAADLPDDV 359 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ ++ +Q ++++ +G + +L+E ++ +L GR+ + V Sbjct: 360 SEEEKKQRLYILQDRISQQAMAWSRRKLGTVQRILVEGTSRKSVMELAGRTECNRVVNFE 419 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +IG + V ITDV ++L G L+ Sbjct: 420 GSPEHIGKFVDVEITDVYANSLRGVLL 446 >gi|15800374|ref|NP_286386.1| hypothetical protein Z0810 [Escherichia coli O157:H7 EDL933] gi|25305438|pir||F85566 hypothetical protein yleA [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12513570|gb|AAG54994.1|AE005245_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 474 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 292/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q +++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWXRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440 >gi|152984799|ref|YP_001346514.1| hypothetical protein PSPA7_1128 [Pseudomonas aeruginosa PA7] gi|229890606|sp|A6V0C9|MIAB_PSEA7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|150959957|gb|ABR81982.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudomonas aeruginosa PA7] Length = 446 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/448 (45%), Positives = 285/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F++++GCQMN YDS RM D+ Q E + +AD+I+LNTC IREKA EKV+S Sbjct: 3 KKLFIETHGCQMNEYDSSRMADLLGEHQALEVTENAAEADVILLNTCSIREKAQEKVFSK 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG R+LK ++ DL++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGMWRDLK----QQNPDLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R ++ VD + +KF+RL R G TAF+++ EGC K+C+FCVVPYTRG E Sbjct: 119 RSTRKPQVDVSFPEIEKFDRLP-----EPRVDGPTAFVSVMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +RG+ DG F++LL ++ + G+ R Sbjct: 174 VSRPFDDVIAEVIHLAENGVREVTLLGQNVNGFRGQTHDGRLADFAELLRVVAAVDGIER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH ++ L+ ++HLPVQSGSDR+L +M R HT EY+ I ++ Sbjct: 234 IRYTTSHPLEFSDALIQAHAEVPELVKFIHLPVQSGSDRVLAAMKRNHTVLEYKSRIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++ PDI ISSDFIVGFPGET+ DF TM LV+++G+ +FSF YS R GTP +++ + + Sbjct: 294 KAAVPDICISSDFIVGFPGETEKDFEQTMKLVEEVGFDFSFSFIYSARPGTPAADLADDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E VK RL LQ ++ +Q + VG +L+ K+ G L GR+ + V Sbjct: 354 PEEVKKRRLQILQGRIHQQGYEISRRMVGSTQRILVTDFSKKDPGMLQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG +V I D +L G L+ Sbjct: 414 CDNPRLIGQFAQVHIDDALPHSLRGTLI 441 >gi|307545979|ref|YP_003898458.1| bifunctional enzyme involved in thiolation and methylation of tRNA [Halomonas elongata DSM 2581] gi|307218003|emb|CBV43273.1| bifunctional enzyme involved in thiolation and methylation of tRNA [Halomonas elongata DSM 2581] Length = 447 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/449 (44%), Positives = 291/449 (64%), Gaps = 14/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS RM D+ S E + DAD+I+LNTC IREKA EKV+ Sbjct: 3 KKLFIKTHGCQMNEYDSARMADLLGESHQLELTDDEHDADVILLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK++ DL++ V GCVA EGE + +R+P V++V GPQT +R+P +L+ Sbjct: 63 LGRWKKLKDA----NPDLVIGVGGCVASQEGEALRKRAPQVDMVFGPQTLHRVPAMLDAR 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K VVD + +KF+ L G TAF+++ EGC K+CTFCVVPYTRG E Sbjct: 119 QDDKISVVDVTFPEIEKFDHLP-----KPTSDGATAFVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+DE L D GV EI LLGQNVNA+RG+ G++ ++L+ ++ + G+ R Sbjct: 174 VSRPFEAVMDEVIHLADQGVREINLLGQNVNAYRGENQLGDEIDLAELISCVAAVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + SD LI+A+G++ L+ +LHLPVQ+GSD +L +M R HT EY ++RI Sbjct: 234 IRFTTSHPVEFSDSLIEAYGEIPELVSHLHLPVQAGSDNVLAAMKRGHTVEEYVDKLERI 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R++RPDI+ SSDFI+GFPGET+ DF +TMDL+ +IG+ +FSF YS R GTP + + ++ Sbjct: 294 RALRPDISFSSDFIIGFPGETEADFESTMDLIHRIGFDVSFSFVYSARPGTPAAALPDET 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E VK +RL LQ+++ +Q + + VG +L+ K+ G+L GR+ + V Sbjct: 354 PEAVKKQRLAILQERINQQAMQISRRMVGTTQRILVTGFSPKDPGQLSGRTENNRVVNFR 413 Query: 442 SKNHN--IGDIIKVRITDVKISTLYGELV 468 + N IG + V IT+ ++L G+L Sbjct: 414 APNPTELIGYFVDVEITEALPNSLRGDLA 442 >gi|152979971|ref|YP_001352121.1| tRNA modifying enzyme [Janthinobacterium sp. Marseille] gi|229890610|sp|A6SV24|MIAB_JANMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|151280048|gb|ABR88458.1| tRNA modifying enzyme [Janthinobacterium sp. Marseille] Length = 446 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/451 (44%), Positives = 295/451 (65%), Gaps = 15/451 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ S+G + ++ +DAD+I+LNTC +REKA EKV+S Sbjct: 3 KKIYIKTFGCQMNEYDSDKMVDVLNASEGLIKTDTPEDADVILLNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + DL++ V GCVA EG+ I++R+P V++V GPQT +RLPE+L++ Sbjct: 63 LGRLRELKFN----NPDLVIGVGGCVASQEGDAIVKRAPYVDLVFGPQTLHRLPEMLKQR 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ + + G TAF++I EGC K+C++CVVPYTRG E Sbjct: 119 RSTGRSQVDISFPEIEKFDHMPPA-----KVEGATAFVSIMEGCSKYCSYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L GV EITLLGQNVNA+RG+ DGE F+ L+ ++E++G+ R Sbjct: 174 VSRRFEDVLAEVAGLEAQGVKEITLLGQNVNAYRGEMADGEIADFALLIEYIAELEGIER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHP++ + LI A+ + L+ +L+LP Q GSDRIL +M R +T+ EY+ I+ R+ Sbjct: 234 IRFVTSHPKEFTQRLIDAYAKVPKLVNHLYLPAQHGSDRILAAMKRGYTSLEYKSILRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R VRP+I+ISSDFIVGFPGETD DF A M L++ IGY +FSF +SPR GTP +N+ + Sbjct: 294 REVRPNISISSDFIVGFPGETDADFEAMMKLINDIGYDNSFSFIFSPRPGTPAANLEDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN 441 VK +RL LQ + + ++D VG + +L+E K+ +L GR+ + V Sbjct: 354 PHEVKLQRLQRLQAVIDQNTRRYSDEMVGTVQRILVEGPSKKDPDELQGRTENNRVVNFA 413 Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELVV 469 + H IG ++ V I TL GE++V Sbjct: 414 AGEHGARLIGQMVDVNIVQSFAYTLRGEIIV 444 >gi|238920797|ref|YP_002934312.1| tRNA-I(6) [Edwardsiella ictaluri 93-146] gi|238870366|gb|ACR70077.1| tRNA-I(6) [Edwardsiella ictaluri 93-146] Length = 474 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS ++ D+ S G E ++ +DAD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKIADLLGSTHGLELTDNAEDADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I R+ V+++ GPQT +RLPE+++ A Sbjct: 63 LGRWKMLKEAK----PDLIIGVGGCVASQEGEHIRERASFVDIIFGPQTLHRLPEMIDSA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG E Sbjct: 119 RSSHGPVVDVSFPEIEKFDRLP-----EPRADGATAFVSIMEGCNKYCTYCVVPYTRGAE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E +L GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R Sbjct: 174 VSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATFDGGICSFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + SD ++ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPIEFSDDIVAVYEDTPELVSFLHLPVQSGSDRILNLMKRTHTALEYKAIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF TM L+ ++ + ++SF +S R GTP ++ML+ V Sbjct: 294 RRARPDIQISSDFIVGFPGETQQDFEQTMQLIAEVDFDMSYSFIFSARPGTPAADMLDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + ++ +G + +L+E ++ +L GR+ + V Sbjct: 354 AEEEKKQRLYILQERINQQAMRYSRHMLGTVQRILVEGTSRKNVMELSGRTENNRVVNFA 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + IG + V IT V ++L G +V Sbjct: 414 GQPEMIGRFVDVEITGVLPNSLRGVVV 440 >gi|188576122|ref|YP_001913051.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520574|gb|ACD58519.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 460 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 203/455 (44%), Positives = 294/455 (64%), Gaps = 17/455 (3%) Query: 21 CIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEK 79 +V + ++K++GCQMN YDS +M D+ S+G E ++ ++AD++++NTC IREKA EK Sbjct: 8 AVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSIREKAQEK 67 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 V+S LGR + LK G +++ V GCVA EGE I++R+P V++V GPQT +RLPEL Sbjct: 68 VFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPEL 123 Query: 140 LE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + R GK VD + +KF+RL R G +AF++I EGC K+C+FCVVPYT Sbjct: 124 IRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYT 178 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLD-GEKCTFSDL---LYS 253 RG E+SR V+ E +L GV EI LLGQNVNA+RG G D G+ ++DL + + Sbjct: 179 RGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDPAQYADLGLLIRT 238 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 +++I+G+ R+R+TTSHP + SD L+ A+ D+ L LHLPVQ+GSDRIL +M R +TA Sbjct: 239 IAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANCLHLPVQAGSDRILSAMKRGYTAL 298 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 E++ I ++R+VRPDI+ISSDFIVGFPGET+ DF TM L++ +G+ Q+FSF YS R GT Sbjct: 299 EFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPGT 358 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432 P S++ + E VK RL LQ + S + + VG + VL+E ++ +L G+S Sbjct: 359 PASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDPNELTGKS 418 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ V IG + V IT+ ++L G + Sbjct: 419 ENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 453 >gi|320638111|gb|EFX07875.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli O157:H7 str. G5101] Length = 474 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ +I + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKALIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440 >gi|319943047|ref|ZP_08017330.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lautropia mirabilis ATCC 51599] gi|319743589|gb|EFV95993.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lautropia mirabilis ATCC 51599] Length = 473 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 204/450 (45%), Positives = 282/450 (62%), Gaps = 15/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ ++G E + ++AD+++ NTC IREKA EKV+S Sbjct: 3 RKLYLRTFGCQMNSYDSERMADLLAETEGAELTDDPNEADIVLFNTCSIREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG R +K +R +L++ V GCVA EGE I+ R+P V+VV GPQT +RLPEL++R Sbjct: 63 LGYFRAMKAAR----PELIIGVGGCVASQEGEAIVSRAPFVDVVFGPQTLHRLPELIDRR 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G VD + +KF+ L RK G +AF++I EGC K+C+FCVVPYTRG E Sbjct: 119 RQTGHSQVDIRFPEIEKFDALPP-----PRKVGASAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGL 260 ISR V+ + L + GV E+TLLGQNVNA+ G+ G D F+ LL + +I G+ Sbjct: 174 ISRPFEDVLSDVITLAEQGVKEVTLLGQNVNAYLGQVEGFDA-PADFATLLDYIHDIPGI 232 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHPR+ ++ LI AH L L P +HLPVQSGSDRIL +M R +TA EYR I+ Sbjct: 233 ERIRYTTSHPREFTERLIDAHAQLPKLAPLVHLPVQSGSDRILAAMKRGYTALEYRSIVR 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R+ P I +++DFIVGFPGET+ DF T+ L + + Y A+SF YSPR GTP +N+ + Sbjct: 293 RLRAASPGIGLTTDFIVGFPGETEADFLKTLKLAEDLAYDDAYSFIYSPRPGTPAANLQD 352 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439 + K ERL LQ +++ ++ VG VL+E K+ +L GR P + V Sbjct: 353 ETPHEEKVERLQRLQAVVQQSSLAIARGMVGSRQRVLVEGPSRKDASELSGRCPNNRMVN 412 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 IG +I V IT TL GE V Sbjct: 413 FPGAPELIGQLIDVDITSAMSHTLRGEPVA 442 >gi|24372764|ref|NP_716806.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella oneidensis MR-1] gi|81446317|sp|Q8CX45|MIAB_SHEON RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|24346842|gb|AAN54251.1|AE015562_1 tRNA-i(6)A37 modification enzyme MiaB [Shewanella oneidensis MR-1] Length = 474 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ QGY ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + DL++ V GCVA EG+ I R+ V+++ GPQT +RLPE++E+ Sbjct: 63 LGRWKTLKD----KNPDLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIEQV 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G K V+D + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 RRGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L + GV E+ LLGQNVNA+RG DG CTF++LL ++ I G+ R Sbjct: 174 VSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + + +I + D L+ +LHLPVQSGSDRIL +M R H A EY+ II R+ Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGET +DF TM L++ + + +FSF YS R GTP +++ + V Sbjct: 294 RKARPDIQISSDFIIGFPGETQEDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 D K +RL LQ ++ +Q + ++ +G + +L+E K +L GR+ + V Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +IG + V I DV ++L G+ + Sbjct: 414 GLPKHIGTFVDVEIVDVYTNSLRGKFI 440 >gi|114046575|ref|YP_737125.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella sp. MR-7] gi|123030839|sp|Q0HXT7|MIAB_SHESR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|113888017|gb|ABI42068.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella sp. MR-7] Length = 474 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 196/447 (43%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ QGY ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + DL++ V GCVA EG+ I R+ V+++ GPQT +RLP+++E+ Sbjct: 63 LGRWKTLKD----KNPDLIIGVGGCVASQEGKAIKDRAHCVDIIFGPQTLHRLPDMIEQV 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G K V+D + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 RRGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L + GV E+ LLGQNVNA+RG DG CTF++LL ++ I G+ R Sbjct: 174 VSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + + +I + D L+ +LHLPVQSGSDRIL +M R H A EY+ II R+ Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGET +DF TM L++ + + +FSF YS R GTP +++ + V Sbjct: 294 RKARPDIQISSDFIIGFPGETKEDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 D K +RL LQ ++ +Q + ++ +G + +L+E K +L GR+ + V Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG + V I DV ++L G+ + Sbjct: 414 GQPKHIGSFVDVEIVDVYTNSLRGKFI 440 >gi|21231765|ref|NP_637682.1| hypothetical protein XCC2328 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768109|ref|YP_242871.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas campestris pv. campestris str. 8004] gi|188991239|ref|YP_001903249.1| hypothetical protein xccb100_1844 [Xanthomonas campestris pv. campestris str. B100] gi|81305914|sp|Q4UVS2|MIAB_XANC8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|81793688|sp|Q8P8B5|MIAB_XANCP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229891032|sp|B0RRW2|MIAB_XANCB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|21113472|gb|AAM41606.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573441|gb|AAY48851.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] gi|167732999|emb|CAP51197.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 485 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 203/455 (44%), Positives = 292/455 (64%), Gaps = 17/455 (3%) Query: 21 CIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEK 79 +V + ++K++GCQMN YDS +M D+ S+G E ++ +DAD++++NTC IREKA EK Sbjct: 33 ALVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEK 92 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 V+S LGR + LK G +++ V GCVA EGE I++R+P V++V GPQT +RLPEL Sbjct: 93 VFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPEL 148 Query: 140 LE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + R GK VD + +KF+RL R G +AF++I EGC K+C+FCVVPYT Sbjct: 149 IRARRESGKSQVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYCSFCVVPYT 203 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLD-GEKCTFSDL---LYS 253 RG E+SR V+ E +L GV EI LLGQNVNA+RG G D GE ++DL + + Sbjct: 204 RGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGEPAQYADLGLLIRT 263 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 +++I G+ R+R+TTSHP + SD L+ A+ D+ L YLHLPVQ+GSDRIL +M R +TA Sbjct: 264 IAQIDGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTAL 323 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 E++ I ++R+VRPDI+ISSDFIVGFPGETD DF TM L++ +G+ Q+FSF YS R GT Sbjct: 324 EFKSKIRKLRAVRPDISISSDFIVGFPGETDADFDKTMKLIEDVGFDQSFSFIYSRRPGT 383 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432 P S++ + + VK RL LQ + + VG + VL+E ++ +L G++ Sbjct: 384 PASDLEDDTPDAVKQARLARLQAHINAHAAGISQRMVGSVQRVLVEGPSRRDANELTGKT 443 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ V +G + V IT+ ++L G + Sbjct: 444 ENMRPVNFPGNPRLVGQFVDVLITEALSNSLRGRI 478 >gi|88705750|ref|ZP_01103460.1| Protein of unknown function, UPF0004 [Congregibacter litoralis KT71] gi|88700263|gb|EAQ97372.1| Protein of unknown function, UPF0004 [Congregibacter litoralis KT71] Length = 433 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 203/439 (46%), Positives = 289/439 (65%), Gaps = 17/439 (3%) Query: 36 MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS RM+D+ S G + DDAD+I+LNTC IREKA EKV+ LGR +NLK Sbjct: 1 MNEYDSARMQDLLVDSHGLVPTDREDDADVILLNTCSIREKAQEKVFHQLGRWKNLK--- 57 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTD 153 ++ +L++ V GCVA EG +I +R+P V++V GPQT +RLPE+L ER G VVD Sbjct: 58 -QKNPELIIGVGGCVASQEGADIGKRAPYVDLVFGPQTLHRLPEMLDERRDSGNLVVDIT 116 Query: 154 YSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211 + +KF+RL VDG +AF++I EGC K+C+FCVVPYTRG E+SR L V+ Sbjct: 117 FPEIEKFDRLPEPSVDG-------PSAFVSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVI 169 Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271 E L GV E+ LLGQNVNA+RG+ +G+ F++LL+ ++ I G+ R+RYTTSHP Sbjct: 170 AEVASLAGRGVREVNLLGQNVNAYRGESHEGDIVDFAELLHFVAAIPGIDRIRYTTSHPV 229 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 + S+ LI+A+ D+ L+ +LHLPVQ+GSDR+L +M R HT EY+ I ++R++RP+I++ Sbjct: 230 EFSEALIQAYADIPELVDHLHLPVQAGSDRVLANMKRGHTVLEYKSKIRKLRAIRPNISL 289 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391 SSDFI+GFPGET+ DF ATM L+D IG+ +FSF YS R GTP S++ + DE K RL Sbjct: 290 SSDFIIGFPGETEADFAATMKLIDDIGFDMSFSFIYSARPGTPASDLKDDTDEETKKSRL 349 Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHN-IGD 449 LQ ++ +Q + + VG +L+ K+ G+L GR+ + V ++ +H IG Sbjct: 350 HILQARINQQAQAISRHMVGSRQRILVSGPSRKDPGQLQGRTENNRVVNFSADDHGLIGQ 409 Query: 450 IIKVRITDVKISTLYGELV 468 + V I + ++L GEL+ Sbjct: 410 FVDVTIGEALPNSLRGELI 428 >gi|332342008|gb|AEE55342.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli UMNK88] Length = 474 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLP+++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPKMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440 >gi|323976357|gb|EGB71447.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli TW10509] Length = 474 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + G++ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGFQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440 >gi|299067908|emb|CBJ39122.1| isopentenyl-adenosine A37 tRNA methylthiolase, Fe-S protein [Ralstonia solanacearum CMR15] Length = 452 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 204/456 (44%), Positives = 291/456 (63%), Gaps = 20/456 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ ++G ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIKTFGCQMNEYDSDKMADVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSD 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR++ LK DL+V V GCVA EG I+ R+P V+VV GPQT +RLPEL++ R Sbjct: 62 LGRVKALK----ARNPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPELIDAR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 118 RRTGRPQVDVSFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L + GV E+TLLGQNVNA+ GK G E+ F+ LL ++EI G+ Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYIGKMGDTSERADFALLLEYVAEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP++ + LI+A+ L+ +LHLPVQ GSDRIL +M R +T EY+ II + Sbjct: 233 RIRYTTSHPKEFTARLIEAYATNRKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+++++DFIVGFPGETD DF TMDLV +IGY +FSF YSPR GTP +N+ + Sbjct: 293 LRAIRPDLSVATDFIVGFPGETDADFAKTMDLVHEIGYDNSFSFIYSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433 VK ERL LQ + ++ VG + +L+E K+ +L GR+ Sbjct: 353 TPHAVKLERLKHLQATIDANMARISEGMVGSVQRILVEGPSRKDPSELHGRTENNRVVNF 412 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L + ++ +G ++ VRI +L GE+VV Sbjct: 413 ALPDLSQARRDQLVGQMLDVRIVHAFPHSLRGEVVV 448 >gi|229890690|sp|A8AJE9|MIAB_CITK8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 474 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 292/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EG+ I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSG+DR+L M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGADRVLNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G + +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPEMIGKFVDVEITDVYTNSLRGKVV 440 >gi|269139970|ref|YP_003296671.1| rRNA modification protein [Edwardsiella tarda EIB202] gi|267985631|gb|ACY85460.1| rRNA modification protein [Edwardsiella tarda EIB202] gi|304559803|gb|ADM42467.1| tRNA-i(6)A37 methylthiotransferase [Edwardsiella tarda FL6-60] Length = 474 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/447 (44%), Positives = 290/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS ++ D+ S G E ++ +DAD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKIADLLGSTHGLELTDNAEDADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I R+ V+++ GPQT +RLPE+++ A Sbjct: 63 LGRWKMLKEAK----PDLIIGVGGCVASQEGEHIRERASCVDIIFGPQTLHRLPEMIDSA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG E Sbjct: 119 RSSHGPVVDVSFPEIEKFDRLP-----EPRADGATAFVSIMEGCNKYCTYCVVPYTRGAE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E +L GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R Sbjct: 174 VSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATFDGGICSFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + SD +I + D L+ +LHLPVQSGSDR+L M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPIEFSDDIIAVYEDTPELVSFLHLPVQSGSDRVLNLMKRTHTALEYKAIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF TM L+ ++ + ++SF +S R GTP ++M++ V Sbjct: 294 RRARPDIQISSDFIVGFPGETQQDFEQTMQLIAEVDFDMSYSFIFSARPGTPAADMVDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + ++ +G + +L+E ++ +L GR+ + V Sbjct: 354 AEEEKKQRLYILQERINQQAMRYSRRMLGTVQRILVEGTSRKNVMELSGRTENNRVVNFA 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + IG + V IT+V ++L G +V Sbjct: 414 GQPEMIGRFVDVEITEVLPNSLRGVVV 440 >gi|300927231|ref|ZP_07142963.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 182-1] gi|301329194|ref|ZP_07222185.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 78-1] gi|300416797|gb|EFK00108.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 182-1] gi|300844482|gb|EFK72242.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Escherichia coli MS 78-1] Length = 474 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F++LL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFANLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440 >gi|238752614|ref|ZP_04614087.1| hypothetical protein yrohd0001_990 [Yersinia rohdei ATCC 43380] gi|238709205|gb|EEQ01450.1| hypothetical protein yrohd0001_990 [Yersinia rohdei ATCC 43380] Length = 478 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 200/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ + ++ADL++LNTC IREKA EKV+S Sbjct: 7 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTENPEEADLLLLNTCSIREKAQEKVFSL 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + LK ++ +L++ V GCVA EGE + +R+P V+VV GPQT +RLPE++ Sbjct: 67 LGHWKLLK----EKNPELIIGVGGCVASQEGEHLRQRAPCVDVVFGPQTLHRLPEMINHV 122 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + +VD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 123 QGSHSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 177 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 178 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 237 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 238 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 297 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGET DF TM LV I + ++SF YS R GTP +++ + V Sbjct: 298 RQARPDIQISSDFIIGFPGETQLDFEQTMKLVADIRFDTSYSFIYSSRPGTPAADLPDDV 357 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + VG + +L+E ++ +L GR+ + V Sbjct: 358 SEEEKKQRLHILQQRITQQAMEISREMVGTVQRILVEGTSRKNVMELAGRTENNRVVNFE 417 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV S+L G L+ Sbjct: 418 GMPELIGKFVDVEIIDVHASSLRGVLL 444 >gi|320016175|gb|ADV99746.1| isopentenyl-adenosine A37 tRNA methylthiolase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 474 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/447 (44%), Positives = 285/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ + LK ++ L++ V G VA EGE++ +R+P V+V+ GPQT +RLPE++ Sbjct: 63 LGQWKLLK----EKNPQLIIGVGGYVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 QGTNSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF TM LV I + ++SF YSPR GTP +++ V Sbjct: 294 RQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPNNV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ +Q + + VG + VL+E ++ +L GR+ + V Sbjct: 354 SEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSRKNVMELAGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I +V S+L G L+ Sbjct: 414 GSPDMIGKFVDVEIVNVYASSLRGILL 440 >gi|17545250|ref|NP_518652.1| hypothetical protein RSc0531 [Ralstonia solanacearum GMI1000] gi|81506472|sp|Q8Y206|MIAB_RALSO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|17427541|emb|CAD14059.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000] Length = 457 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 204/455 (44%), Positives = 290/455 (63%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ ++G ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIKTFGCQMNEYDSDKMADVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSD 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR++ LK DL+V V GCVA EG I+ R+P V+VV GPQT +RLPEL++ R Sbjct: 62 LGRVKALK----ARNPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPELIDAR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 118 RRTGRPQVDVSFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L + GV E+TLLGQNVNA+ GK G E+ F+ LL ++EI G+ Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYIGKMGGTSERADFALLLEYVAEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP++ + LI+A+ L+ +LHLPVQ GSDRIL +M R +T EY+ II + Sbjct: 233 RIRYTTSHPKEFTARLIEAYATNRKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPDI+I++DFIVGFPGETD DF TMDLV +IGY +FSF YSPR GTP +N+ + Sbjct: 293 LRAIRPDISIATDFIVGFPGETDADFAKTMDLVHEIGYDNSFSFIYSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433 VK ERL LQ + ++ VG + +L+E K+ +L GR+ Sbjct: 353 TPHAVKLERLKHLQATIDANMARISEGMVGSVQRILVEGPSRKDPSELHGRTENNRVVNF 412 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 L + ++ +G ++ VRI +L G++V Sbjct: 413 ALPDLPQARRDQLVGQMLDVRIVHAYPHSLRGDVV 447 >gi|301155952|emb|CBW15422.1| isopentenyl-adenosine A37 tRNA methylthiolase [Haemophilus parainfluenzae T3T1] Length = 461 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/436 (46%), Positives = 286/436 (65%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ + G E + ++AD+++LNTC IREKA EKV+ LGR + LK Sbjct: 1 MNEYDSSKMADLLLNTHGLELTDIPEEADVLLLNTCSIREKAQEKVFHQLGRWKELK--- 57 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153 K+ +L++ V GCVA EGE I R+P V++V GPQT +RLPE++ + R GK VVD Sbjct: 58 -KQNPNLVIGVGGCVASQEGEHIRHRAPYVDIVFGPQTLHRLPEMINQIRGGKSSVVDVS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG E+SR + V+ E Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPVDDVLFE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L + GV EI LLGQNVNA+RG DG CTF++LL ++ I G+ RLR+TTSHP + Sbjct: 172 IAQLAEQGVREINLLGQNVNAYRGPTFDGGICTFAELLRLVASIDGIDRLRFTTSHPIEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D +I + D L+ ++HLPVQ+GSDRIL M R HTA EY+ II ++R+VRP+I ISS Sbjct: 232 TDDIIDVYRDTPELVDFVHLPVQAGSDRILTMMKRGHTALEYKSIIRKLRAVRPNIQISS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFIVGFPGET ++F TM+L+ ++ + +FSF YS R GTP ++M + V E K +RL Sbjct: 292 DFIVGFPGETKEEFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPDDVTEEEKKQRLYL 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ+++ +Q ++ +G VL+E K+ +L GR+ + V IG + Sbjct: 352 LQERINQQAAQYSRRMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQGSPDMIGKFVD 411 Query: 453 VRITDVKISTLYGELV 468 ++ITDV ++L GE+V Sbjct: 412 IKITDVYTNSLRGEVV 427 >gi|157146729|ref|YP_001454048.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Citrobacter koseri ATCC BAA-895] gi|157083934|gb|ABV13612.1| hypothetical protein CKO_02502 [Citrobacter koseri ATCC BAA-895] Length = 488 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 292/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ ++AD+++LNTC IREKA EKV+ Sbjct: 17 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 76 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EG+ I +R+ V+++ GPQT +RLPE++ Sbjct: 77 LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSV 132 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 133 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 186 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 187 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 246 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSG+DR+L M R HTA EY+ II + Sbjct: 247 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGADRVLNLMGRTHTALEYKAIIRK 306 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 307 LRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 366 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G + +L+E ++ +L GR+ + V Sbjct: 367 VPEEEKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKSIMELSGRTENNRVVNF 426 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 427 EGTPEMIGKFVDVEITDVYTNSLRGKVV 454 >gi|319778544|ref|YP_004129457.1| tRNA-i(6)A37 methylthiotransferase [Taylorella equigenitalis MCE9] gi|317108568|gb|ADU91314.1| tRNA-i(6)A37 methylthiotransferase [Taylorella equigenitalis MCE9] Length = 469 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 208/464 (44%), Positives = 299/464 (64%), Gaps = 18/464 (3%) Query: 14 VSQIVDQCIV-----PQRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVL 67 SQ +D+ + ++ ++K++GCQMN YDS +M D+ ++ G E ++ +DAD+I+L Sbjct: 15 ASQFIDEKPIHFPAGAKKLYIKTFGCQMNEYDSEKMADVLHAEKGLELTDNPEDADVILL 74 Query: 68 NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127 NTC IREKA EKV+S LGRI N K+ +LL+ V GCVA EG IL+R+P V+++ Sbjct: 75 NTCSIREKAQEKVFSDLGRI----NLLKKKKPELLIGVGGCVASQEGATILQRAPYVDII 130 Query: 128 VGPQTYYRLPELLE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186 GPQT +RLPEL+E + G+ VD + +KF+ L R G TAF++I EGC Sbjct: 131 FGPQTLHRLPELIEQKESSGRAQVDVSFPEIEKFDHLPPA-----RINGPTAFVSIMEGC 185 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKC 245 K+C++CVVPYTRG EISR L V+ E L D GV EI LLGQNVNA+RG G DGE Sbjct: 186 SKYCSYCVVPYTRGEEISRPLEDVLIEVADLADQGVKEINLLGQNVNAYRGTVGEDGEIA 245 Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 F+ LL + +I G+ R+RY TSHP++M+ LI+AH L L+P+LHLPVQ+GSDR+L + Sbjct: 246 DFAMLLELIHDIPGVERIRYITSHPKEMTKRLIEAHAKLPKLVPFLHLPVQAGSDRVLAA 305 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R +T+ EY+ ++ + RP + +SSDFIVGFPGET+DDF AT+ L+ + +FSF Sbjct: 306 MKRGYTSLEYKSVVRSLYKARPGLTLSSDFIVGFPGETEDDFEATLKLIKDLNIDTSFSF 365 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-E 424 YS R GTP +++ + VK +RL LQ + +Q F++ +G +L+E K + Sbjct: 366 IYSRRPGTPAADLPDDTPYEVKLDRLQRLQALVNKQAKEFSEKMLGTEQIILVEGFSKRD 425 Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +L+GR+ + V + IG ++ VRIT+V ++L GELV Sbjct: 426 SNELMGRTENNRIVNFKGSENLIGQMVPVRITEVYTNSLRGELV 469 >gi|15599175|ref|NP_252669.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas aeruginosa PAO1] gi|107103498|ref|ZP_01367416.1| hypothetical protein PaerPA_01004568 [Pseudomonas aeruginosa PACS2] gi|116052019|ref|YP_789138.1| hypothetical protein PA14_12350 [Pseudomonas aeruginosa UCBPP-PA14] gi|218889737|ref|YP_002438601.1| hypothetical protein PLES_09951 [Pseudomonas aeruginosa LESB58] gi|254236873|ref|ZP_04930196.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254242666|ref|ZP_04935988.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296387492|ref|ZP_06876967.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas aeruginosa PAb1] gi|313109420|ref|ZP_07795380.1| hypothetical protein PA39016_001790020 [Pseudomonas aeruginosa 39016] gi|12230974|sp|Q51470|MIAB_PSEAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|122261166|sp|Q02SE8|MIAB_PSEAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|9950171|gb|AAG07367.1|AE004816_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115587240|gb|ABJ13255.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126168804|gb|EAZ54315.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126196044|gb|EAZ60107.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218769960|emb|CAW25722.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] gi|310881882|gb|EFQ40476.1| hypothetical protein PA39016_001790020 [Pseudomonas aeruginosa 39016] Length = 446 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 202/448 (45%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F++++GCQMN YDS RM D+ Q E + +AD+I+LNTC IREKA EKV+S Sbjct: 3 KKLFIETHGCQMNEYDSSRMADLLGEHQALEVTENAAEADVILLNTCSIREKAQEKVFSK 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG R LK ++ DL++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGMWRELK----QQNPDLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R ++ VD + +KF+RL R G TAF+++ EGC K+C+FCVVPYTRG E Sbjct: 119 RSTRKPQVDVSFPEIEKFDRLP-----EPRVDGPTAFVSVMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +RG DG F++LL ++ + G+ R Sbjct: 174 VSRPFDDVIAEVIHLAENGVREVTLLGQNVNGFRGLTHDGRLADFAELLRVVAAVDGIER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH ++ L+ ++HLPVQSGSDR+L +M R HT EY+ I ++ Sbjct: 234 IRYTTSHPLEFSDALIQAHAEVPELVKFIHLPVQSGSDRVLAAMKRNHTVLEYKSRIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++ PDI ISSDFIVGFPGET+ DF TM LV+ +G+ +FSF YS R GTP +++ + + Sbjct: 294 KAAVPDICISSDFIVGFPGETEKDFEQTMKLVEDVGFDFSFSFIYSARPGTPAADLADDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E VK +RL LQ ++ +Q + VG +L+ K+ G L GR+ + V Sbjct: 354 PEEVKKQRLQILQSRIHQQGYEISRRMVGSTQRILVTDFSKKDPGMLQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG +V I D +L G L+ Sbjct: 414 CDNPRLIGQFAQVHIDDALPHSLRGTLI 441 >gi|268590389|ref|ZP_06124610.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rettgeri DSM 1131] gi|291314302|gb|EFE54755.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rettgeri DSM 1131] Length = 476 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M + + GY+ ++ADL++LNTC IREKA EKV+ Sbjct: 5 KKLYIKTWGCQMNEYDSSKMVSLLENTHGYQLTEVAEEADLLLLNTCSIREKAQEKVFHQ 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + K+ + D+++ V GCVA EG+ I +R+P V++V GPQT +RLPE++ + Sbjct: 65 LGRWKFFKD----KNPDIIIGVGGCVASQEGDFIRQRAPSVDIVFGPQTLHRLPEMINQV 120 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R V+D + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG Sbjct: 121 Q-GTRSPVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNA+RG+ DGE C+F++LL ++ I G+ Sbjct: 175 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGETFDGEICSFAELLRLVAAIDGID 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 235 RVRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLTMMKRAHTALEYKAIIRK 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RP I ISSDFIVGFPGET +DF TM L+ + + ++SF YS R GTP +++ + Sbjct: 295 LREARPGILISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFVYSARPGTPAADLPDD 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E+ K +RL LQ+++ +Q +SF+ VG + +L+E ++ +L GR+ + V Sbjct: 355 VTEDEKKQRLYLLQQRINQQALSFSRQMVGTVQRILVEGTSRKNVMELSGRTENNRVVNF 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G+++ Sbjct: 415 EGTPDMIGKFVDVEIVDVYTNSLRGKVI 442 >gi|320183045|gb|EFW57910.1| tRNA-i(6)A37 methylthiotransferase [Shigella flexneri CDC 796-83] Length = 474 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 292/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGSTGSFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFP ET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPSETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440 >gi|237798430|ref|ZP_04586891.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021282|gb|EGI01339.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 442 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 282/448 (62%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + ++++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L D GV E+TLLGQNVN +RG DG +DL+ +++ + G+ R Sbjct: 174 VSRPFDDVLSEVTHLADYGVREVTLLGQNVNGYRGNTHDGRVADLADLIRAVAAVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH D+ L+ +LHLPVQSGSDRIL +M R HT EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHADVPQLVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I+ISSDFIVGFPGET+ DF TM L++ +G+ +FSF YSPR GTP +++ + Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFENTMKLIEDVGFDFSFSFIYSPRPGTPAADLKDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG +L+ + K+ G+L GR+ + V Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSTQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I D + +L G L+ Sbjct: 414 CDNPQLIGQFADVHIDDAQPHSLRGSLL 441 >gi|187733108|ref|YP_001879330.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shigella boydii CDC 3083-94] gi|229890659|sp|B2TU59|MIAB_SHIB3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|187430100|gb|ACD09374.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella boydii CDC 3083-94] Length = 474 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 292/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + Y+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHSYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGSTGSFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L G++V Sbjct: 413 EGTPDMIGKFVDVEITDVYPNSLRGKVV 440 >gi|317047312|ref|YP_004114960.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pantoea sp. At-9b] gi|316948929|gb|ADU68404.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pantoea sp. At-9b] Length = 474 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/447 (44%), Positives = 283/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEEAEEADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK + DL++ V GCVA EG+ I +R+P V++V GPQT +RLPE++ Sbjct: 63 LGRWKKLK----ERNPDLIIGVGGCVASQEGDHIRQRAPCVDIVFGPQTLHRLPEMINTV 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R +VD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 RGSNSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ CTF++LL ++ I G+ R Sbjct: 174 VSRPSDDILLEIAQLAAQGVREVNLLGQNVNAYRGATFDGDFCTFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSG+DRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGET DF TM L+ I + +FSF YS R GTP +++ + V Sbjct: 294 RVARPDIEISSDFIIGFPGETQQDFEQTMKLIGDINFDMSFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ ++ +Q + + +G + +L+E ++ +L GR+ + V Sbjct: 354 PEEEKKQRLYILQDRINQQAMGISRRMLGTVQRILVEGTSRKNVMELSGRTANNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G++V Sbjct: 414 GNVSMIGKFVDVEIVDVYTNSLRGKVV 440 >gi|300692456|ref|YP_003753451.1| isopentenyl-adenosine A37 tRNA methylthiolase, Fe-S protein [Ralstonia solanacearum PSI07] gi|299079516|emb|CBJ52194.1| isopentenyl-adenosine A37 tRNA methylthiolase, Fe-S protein [Ralstonia solanacearum PSI07] Length = 450 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 204/456 (44%), Positives = 290/456 (63%), Gaps = 20/456 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ ++G ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIKTFGCQMNEYDSDKMADVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSD 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR++ LK DL+V V GCVA EG I+ R+P V+VV GPQT +RLPEL++ R Sbjct: 62 LGRVKALK----ARNPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPELIDAR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 118 RRTGRPQVDVSFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L + GV E+TLLGQNVNA+ G+ G E+ F+ LL ++EI G+ Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYIGRMGDTSERADFALLLEYVAEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP++ + LI+A+ L+ +LHLPVQ GSDRIL +M R +T EY+ II + Sbjct: 233 RIRYTTSHPKEFTSRLIEAYATNRKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPDI+I++DFIVGFPGETD DF TMDLV +IGY +FSF YSPR GTP +N+ + Sbjct: 293 LRAIRPDISIATDFIVGFPGETDADFAKTMDLVHEIGYDNSFSFIYSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433 VK ERL LQ + ++ VG + +L+E K+ +L GR+ Sbjct: 353 TPHAVKLERLKHLQATIDANMARISEGMVGSVQRILVEGPSRKDPSELHGRTENNRVVNF 412 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L + ++ +G ++ VRI +L GE+ V Sbjct: 413 ALPDLPQARRDQLVGQMLDVRIVHAFPHSLRGEVAV 448 >gi|294788156|ref|ZP_06753399.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Simonsiella muelleri ATCC 29453] gi|294483587|gb|EFG31271.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Simonsiella muelleri ATCC 29453] Length = 441 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 287/448 (64%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + E++N D AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSEKMLAVLAEEHGDIEQINEPDGADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-LE 141 LGR+++LK KE +L++ VAGCVA EGE I+ R+P V+VV GPQT +RLP++ ++ Sbjct: 62 DLGRVKHLK----KENPNLIIGVAGCVASQEGEAIIERAPYVDVVFGPQTLHRLPKMIMD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G +AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETTGLSQVDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ +GE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIAHLAQQGVKEINLLGQNVNAYRGEMDNGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ SD +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFSDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N A +G I L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQAMLGTIQRCLVEGVSKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I ++++ IT+ + +L GELV Sbjct: 413 YGSADLINQMVELEITEARTFSLSGELV 440 >gi|117919457|ref|YP_868649.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella sp. ANA-3] gi|229890655|sp|A0KTX4|MIAB_SHESA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|117611789|gb|ABK47243.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella sp. ANA-3] Length = 474 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/447 (43%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ QGY ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + DL++ V GCVA EG+ I R+ V+++ GPQT +RLP+++++ Sbjct: 63 LGRWKTLKD----KNPDLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPDMIDQV 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G K V+D + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 RRGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L + GV E+ LLGQNVNA+RG DG CTF++LL ++ I G+ R Sbjct: 174 VSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + + +I + D L+ +LHLPVQSGSDRIL +M R H A EY+ II R+ Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGET +DF TM L++ + + +FSF YS R GTP +++ + V Sbjct: 294 RKARPDIQISSDFIIGFPGETKEDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 D K +RL LQ ++ +Q + ++ +G + +L+E K +L GR+ + V Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG + V I DV ++L G+ + Sbjct: 414 GQPKHIGSFVDVEIVDVYTNSLRGKFI 440 >gi|238790782|ref|ZP_04634541.1| hypothetical protein yfred0001_12920 [Yersinia frederiksenii ATCC 33641] gi|238721140|gb|EEQ12821.1| hypothetical protein yfred0001_12920 [Yersinia frederiksenii ATCC 33641] Length = 474 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTEIPEEADLLLLNTCSIREKAQEKVFSL 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + LK ++ +L++ V GCVA EGE + +R+P V+V+ GPQT +RLPE++ Sbjct: 63 LGHWKLLK----EKNPELIIGVGGCVASQEGEHLRQRAPCVDVIFGPQTLHRLPEMINHV 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + +VD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 QGTHSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 174 VSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 VRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGET DF TM LV + + ++SF YS R GTP +++ + V Sbjct: 294 RQARPDIQISSDFIIGFPGETQQDFEQTMKLVADVHFDTSYSFIYSSRPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K +RL LQ+++ +Q + + VG + +L+E ++ +L GR+ + V Sbjct: 354 SEDEKKQRLHILQQRITQQAMEISRRMVGTVQRILVEGTSRKNVMELAGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV S+L G L+ Sbjct: 414 GTPEMIGKFVDVEIVDVYASSLRGILL 440 >gi|303256206|ref|ZP_07342222.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderiales bacterium 1_1_47] gi|302860935|gb|EFL84010.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderiales bacterium 1_1_47] Length = 441 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/447 (44%), Positives = 290/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS + + GYE + +++ADL+V NTC IREKA EKV+S Sbjct: 4 KKIYLKTFGCQMNEYDSGKIADIAKAAAGYEVTDDINEADLVVFNTCSIREKAQEKVFSD 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK ++ +L + V GCVA EG I+RR+P V+VV GPQT +RLPELLE+ Sbjct: 64 LGRVRELKKTK----PNLKIAVGGCVASQEGGNIVRRAPYVDVVFGPQTLHRLPELLEKN 119 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R VD + +KF+ L TAF++I EGC K+C++CVVPYTRG E Sbjct: 120 EKEHRPQVDISFPEIEKFDHLPTPHAD-----AATAFVSIMEGCSKYCSYCVVPYTRGEE 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + V+ E +L GV E+TLLGQNVNA+RG+G DGE F+ LL ++EI G+ R Sbjct: 175 FSRPVEDVLVEIAQLAAQGVKEVTLLGQNVNAYRGEGPDGEIVDFALLLEYVAEIDGIER 234 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP++ ++ LI+A+ + +L ++HLPVQ+GSDR+L M R +T EY+ II ++ Sbjct: 235 IRYTTSHPKEFTNRLIEAYRKIPILANHVHLPVQAGSDRVLAGMKRGYTILEYKSIIRKL 294 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R++RPDI+I++DFIVGFP ET++DF TM+L+ +I + +FSF YS R GTP + + + Sbjct: 295 RAIRPDISIATDFIVGFPNETEEDFEKTMNLIKEIKFDASFSFVYSKRPGTPAAELPDDT 354 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441 ++VK ERL LQ + + + VG + L+ K+ +GKL R+ + V N Sbjct: 355 PQSVKLERLQRLQALNTQHAQEISQSMVGSVQRCLVVGEAKKGEGKLSARTDNNRIVTFN 414 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++ ++I +V TL GELV Sbjct: 415 GPENLIGQMVNLKINEVYPHTLGGELV 441 >gi|188591273|ref|YP_001795873.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cupriavidus taiwanensis LMG 19424] gi|229890506|sp|B2AHA4|MIAB_CUPTR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|170938167|emb|CAP63153.1| isopentenyl-adenosine A37 tRNA methylthiolase, Fe-S protein [Cupriavidus taiwanensis LMG 19424] Length = 450 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 204/456 (44%), Positives = 292/456 (64%), Gaps = 20/456 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ FVK+YGCQMN YDS +M D+ SQG E ++++DAD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFVKTYGCQMNEYDSDKMVDVLNASQGLEATDNVEDADVILFNTCSVREKAQEKVFSE 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR++ LK + DL++ V GCVA EG I+ R+P V+VV GPQT +RLP+L+ R Sbjct: 62 LGRMKALKAVK----PDLVIGVGGCVASQEGASIVSRAPYVDVVFGPQTLHRLPDLIARR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 118 QRTGQSQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L + GV E+TLLGQNVNA+RGK G E F+ L+ ++EI G+ Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYRGKMGDTSEIADFALLIEYVAEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP++ + L++ +G D L+ +LHLPVQ SDRIL +M R ++ EY+ II R Sbjct: 233 RIRYTTSHPKEFTSRLVELYGRCDKLVNHLHLPVQHASDRILMAMKRGYSVLEYKSIIRR 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+++SSDFIVGFPGETD DF M ++++IGY +FSF +SPR GTP +N+ + Sbjct: 293 LRALRPDMSMSSDFIVGFPGETDADFDKLMAMIEEIGYDTSFSFIFSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433 VK +RL LQ + E + VG + +L+E K+ +L GR+ Sbjct: 353 TPREVKLQRLQRLQATIEENVQRISQGMVGTVQRILVEGPARKDPTELHGRTENNRVVNF 412 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L V ++ +G ++ V IT +L GE+VV Sbjct: 413 ALPGVPQAGRDRLVGQLVDVSITQAFPHSLRGEIVV 448 >gi|74318724|ref|YP_316464.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thiobacillus denitrificans ATCC 25259] gi|74058219|gb|AAZ98659.1| tRNA-i(6)A37 modification enzyme MiaB [Thiobacillus denitrificans ATCC 25259] Length = 461 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/453 (44%), Positives = 283/453 (62%), Gaps = 12/453 (2%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAE 78 C ++ ++K++GCQMN YDS +M D+ ++G ++ +DAD+I+ NTC +REKA E Sbjct: 12 HCPGMKKIYIKTFGCQMNEYDSDKMADVLNAAEGLTPTSTPEDADVILFNTCSVREKAQE 71 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 KV+ LGR+R+LK + +L++ V GCVA EG I+ R+P V+VV GPQT +RLPE Sbjct: 72 KVFHDLGRVRHLKQA----NPNLIIGVGGCVASQEGAAIVARAPFVDVVFGPQTLHRLPE 127 Query: 139 LL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 L+ +R G+ VD + +KF+ L R G AF++I EGC K+CTFCVVPY Sbjct: 128 LIAQRRETGRAQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCTFCVVPY 182 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 TRG E+SR V+ E L GV EITLLGQNVNA++G +G F+ LL + EI Sbjct: 183 TRGEEVSRPFDDVIAEVANLAARGVKEITLLGQNVNAYQGALDEGGTADFAFLLEMVHEI 242 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 G+ R+RYTTSHPR+M+ LI+ +G L L+ +LHLPVQSGSDRIL +M R HT E++ Sbjct: 243 PGVERIRYTTSHPREMTQRLIECYGKLPKLVSHLHLPVQSGSDRILAAMKRGHTVLEFKS 302 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 I+ ++R R D+ +SSDFIVGFPGET DF ATM LV+++ + +FSF YS R GTP ++ Sbjct: 303 IVRKLREQRSDLCLSSDFIVGFPGETGADFEATMKLVEELNFDASFSFIYSKRPGTPAAD 362 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQ 436 + V +K +RL+ LQ ++ Q N + VG + VL+E K +L GR+ + Sbjct: 363 YADDVSAELKTQRLMRLQARIEAQAQGVNRSMVGSVQRVLVEGQARKNANELAGRTGNNR 422 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 V + +G + V IT +L GE V Sbjct: 423 IVNFAGPSRLLGQFVDVTITQALPHSLRGEAVT 455 >gi|317404691|gb|EFV85083.1| hypothetical protein HMPREF0005_04066 [Achromobacter xylosoxidans C54] Length = 477 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 194/443 (43%), Positives = 293/443 (66%), Gaps = 13/443 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS +M D+ QG E ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 29 RKLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEDADVILFNTCSVREKAQEKVFSD 88 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+++LK K +L++ V GCVA EGE I++R+P V+VV GPQT +RLP+L++R Sbjct: 89 LGRVQHLK----KTNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIQRR 144 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ + R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 145 RAEGRSQVDISFPEIEKFDNMPP-----PRVEGATAFVSIMEGCSKYCSFCVVPYTRGEE 199 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L D GV E+TLLGQNVNA+RG+ D GE F+ LL + EI G+ Sbjct: 200 VSRPFDDVLVEVADLADQGVKEVTLLGQNVNAYRGRMSDSGEIADFAMLLEYVHEIPGIE 259 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP++M+ ++ A+ L L+ +LHLPVQ+GSDR+L +M R +T E++ ++ R Sbjct: 260 RIRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTTLEFKSVVRR 319 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPD+ +SSDFIVGFPGET++DF TM L++ +G+ +FSF YS R GTP +++ ++ Sbjct: 320 LRAARPDLTLSSDFIVGFPGETEEDFEKTMKLIEDVGFDTSFSFVYSRRPGTPAADLHDE 379 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440 ++VK RL LQ + EQ + +G +L+E ++ +L+GR+ + V Sbjct: 380 TPQDVKLRRLQRLQALINEQAAAIARNMIGTRQRLLVEGPSRRDPNELMGRTENNRIVNF 439 Query: 441 NSKNHNIGDIIKVRITDVKISTL 463 + IG ++ V IT+ ++L Sbjct: 440 AAPARLIGQMVDVIITEAHTNSL 462 >gi|290510411|ref|ZP_06549781.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Klebsiella sp. 1_1_55] gi|289777127|gb|EFD85125.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Klebsiella sp. 1_1_55] Length = 478 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 291/448 (64%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ ++AD+++LNTC IREKA EKV+ Sbjct: 7 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EG+ I +R+ V+++ GPQT +RLPE++ Sbjct: 67 LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINAV 122 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 123 R-GNRSPVVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRGE 176 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 177 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 236 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 237 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 296 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPDI ISSDFIVGFPGET DDF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 297 LREARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 356 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G + +L+E ++ +L GR+ + V Sbjct: 357 VPEEDKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKSLMELSGRTENNRVVNF 416 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +G + V I DV ++L G++V Sbjct: 417 EGTPDMVGKFVDVEIVDVYTNSLRGKIV 444 >gi|90407491|ref|ZP_01215674.1| tRNA-i(6)A37 modification enzyme MiaB [Psychromonas sp. CNPT3] gi|90311412|gb|EAS39514.1| tRNA-i(6)A37 modification enzyme MiaB [Psychromonas sp. CNPT3] Length = 473 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/446 (44%), Positives = 294/446 (65%), Gaps = 12/446 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + VK++GCQMN YDS +M D+ S GY V++ +DAD+I+LNTC IREKA EKV+ L Sbjct: 4 KLHVKTWGCQMNEYDSSKMADLLNSSNGYISVDNAEDADVILLNTCSIREKAQEKVFHQL 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + LK+ K+ G L++ V GCVA EG+ I RR+P V++V GPQT +RLP++++ + Sbjct: 64 GRWKKLKD---KKPG-LIIGVGGCVASQEGKAIRRRAPYVDIVFGPQTLHRLPKMIQDVK 119 Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 V+D + +KF+ L R G TAF+TI EGC K+CTFC+VPYTRG E+ Sbjct: 120 DNNHAVIDVSFPEIEKFDCLPDA-----RADGATAFVTIMEGCSKYCTFCIVPYTRGEEV 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + ++ E +L + GV EI LLGQNVN++ G DG+ C+F++LL +++ I G+ RL Sbjct: 175 SRPVDDILLEVAQLAEQGVREINLLGQNVNSYIGATFDGKTCSFAELLRNVASIDGIDRL 234 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTS+P D D +I + D L+ +LHLPVQ+GSDRIL +M R HTA +Y++ I ++ Sbjct: 235 RYTTSNPIDFDDEIIDVYRDTPELVDFLHLPVQAGSDRILSAMKRGHTAAQYKEKIVALK 294 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 VRP++ +SSDFIVGFP ETD+DF+ TMDL+++IG+ ++SF YS R GTP ++M + V Sbjct: 295 LVRPNLTLSSDFIVGFPNETDEDFQQTMDLIEEIGFDISYSFIYSQRPGTPAADMPDDVS 354 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442 VK ERL LQ + +Q + VG + +L+E ++ +L GR+ + V Sbjct: 355 LQVKKERLARLQHAITQQALQIARRMVGSVQRILVEGPSRKNIMELCGRTENNRIVNFEG 414 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 + +IG + V IT+V +++ G+ + Sbjct: 415 DHRSIGSFVDVEITEVHSNSIRGKFI 440 >gi|206578177|ref|YP_002239691.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Klebsiella pneumoniae 342] gi|288936533|ref|YP_003440592.1| RNA modification enzyme, MiaB family [Klebsiella variicola At-22] gi|229890612|sp|B5XZQ0|MIAB_KLEP3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|206567235|gb|ACI09011.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Klebsiella pneumoniae 342] gi|288891242|gb|ADC59560.1| RNA modification enzyme, MiaB family [Klebsiella variicola At-22] Length = 474 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 291/448 (64%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EG+ I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINAV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GNRSPVVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 173 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPDI ISSDFIVGFPGET DDF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LREARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G + +L+E ++ +L GR+ + V Sbjct: 353 VPEEDKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKSLMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +G + V I DV ++L G++V Sbjct: 413 EGTPDMVGKFVDVEIVDVYTNSLRGKIV 440 >gi|261343533|ref|ZP_05971178.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rustigianii DSM 4541] gi|282568682|gb|EFB74217.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rustigianii DSM 4541] Length = 476 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 293/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M + S GY+ + ++ADL++LNTC IREKA EKV+ Sbjct: 5 KKLYMKTWGCQMNEYDSSKMVSLLESTHGYQLTDIAEEADLLLLNTCSIREKAQEKVFHQ 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + K+ + D+++ V GCVA EG+ I +R+P V++V GPQT +RLPE++ + Sbjct: 65 LGRWKFFKDKK----PDIIIGVGGCVASQEGDFIRQRAPCVDIVFGPQTLHRLPEMINQI 120 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R ++D + +KF+ L R G TAF++I EGC+K+CTFCVVPYTRG Sbjct: 121 Q-GNRSPIIDISFPEIEKFDNLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNA+RG DGE C+F++LL ++ I G+ Sbjct: 175 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAYRGATFDGEICSFAELLRLVASIDGID 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II + Sbjct: 235 RVRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRK 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RP I ISSDFIVGFPGET +DF TM L+ + + ++SF YS R GTP +++ + Sbjct: 295 LREARPGILISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFVYSARPGTPAADLPDD 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E+ K +RL LQ+++ +Q +SF+ A +G + +L+E ++ +L GR+ + V Sbjct: 355 VTEDEKKQRLYLLQQRINQQAMSFSRAMLGTVQRILVEGTSRKNVMELSGRTENNRVVNF 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G+++ Sbjct: 415 EGTPDMIGKFVDVEIVDVYTNSLRGKVI 442 >gi|241662041|ref|YP_002980401.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ralstonia pickettii 12D] gi|240864068|gb|ACS61729.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ralstonia pickettii 12D] Length = 456 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 204/455 (44%), Positives = 289/455 (63%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K+YGCQMN YDS +M D+ ++G ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIKTYGCQMNEYDSDKMSDVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSE 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR++ LK + DL+V V GCVA EG I+ R+P V+VV GPQT +RLP+L+ R Sbjct: 62 LGRVKALKALK----PDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPDLIAAR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 118 RRTGRSQVDVSFPEIEKFDHLPPA-----RVDGASAFVSIMEGCSKYCSYCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L + GV E+TLLGQNVNA+ GK G E+ F+ LL ++EI G+ Sbjct: 173 VSRPFDDVLAEVAGLAEQGVREVTLLGQNVNAYIGKMGDTSERADFALLLEYVAEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP++ S LI+A+ L+ +LHLPVQ GSDRIL +M R +T EY+ I + Sbjct: 233 RIRYTTSHPKEFSSRLIEAYATNPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSSIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RP+I+I++DFIVGFPGETD DF TMDL+ +IGY +FSF YSPR GTP +N+ + Sbjct: 293 LRAIRPNISIATDFIVGFPGETDADFAKTMDLIHEIGYDTSFSFIYSPRPGTPAANLPDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433 + VK ERL LQ + E + VG + +L+E K+ +L GR+ Sbjct: 353 TPQAVKLERLKHLQATIEENVARISQGMVGSVQRILVEGPSRKDPTELHGRTENNRVVNF 412 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 L + ++ IG ++ VRI +L GE+ Sbjct: 413 ALPDLPQARRDQLIGQMLDVRIVHAFPHSLRGEVA 447 >gi|229891229|sp|Q3SFF1|MIAB_THIDA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 446 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 200/448 (44%), Positives = 282/448 (62%), Gaps = 12/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ ++G ++ +DAD+I+ NTC +REKA EKV+ Sbjct: 2 KKIYIKTFGCQMNEYDSDKMADVLNAAEGLTPTSTPEDADVILFNTCSVREKAQEKVFHD 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR+R+LK + +L++ V GCVA EG I+ R+P V+VV GPQT +RLPEL+ +R Sbjct: 62 LGRVRHLKQA----NPNLIIGVGGCVASQEGAAIVARAPFVDVVFGPQTLHRLPELIAQR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ VD + +KF+ L R G AF++I EGC K+CTFCVVPYTRG E Sbjct: 118 RETGRAQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCTFCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L GV EITLLGQNVNA++G +G F+ LL + EI G+ R Sbjct: 173 VSRPFDDVIAEVANLAARGVKEITLLGQNVNAYQGALDEGGTADFAFLLEMVHEIPGVER 232 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHPR+M+ LI+ +G L L+ +LHLPVQSGSDRIL +M R HT E++ I+ ++ Sbjct: 233 IRYTTSHPREMTQRLIECYGKLPKLVSHLHLPVQSGSDRILAAMKRGHTVLEFKSIVRKL 292 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R R D+ +SSDFIVGFPGET DF ATM LV+++ + +FSF YS R GTP ++ + V Sbjct: 293 REQRSDLCLSSDFIVGFPGETGADFEATMKLVEELNFDASFSFIYSKRPGTPAADYADDV 352 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 +K +RL+ LQ ++ Q N + VG + VL+E K +L GR+ + V Sbjct: 353 SAELKTQRLMRLQARIEAQAQGVNRSMVGSVQRVLVEGQARKNANELAGRTGNNRIVNFA 412 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469 + +G + V IT +L GE V Sbjct: 413 GPSRLLGQFVDVTITQALPHSLRGEAVT 440 >gi|329296076|ref|ZP_08253412.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Plautia stali symbiont] Length = 474 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/447 (43%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY +DAD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEEAEDADVLLLNTCSIREKAQEKVFHL 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK + +L++ V GCVA EG++I +R+ V++V GPQT +RLPE++ + Sbjct: 63 LGRWKKLK----AKNPELIIGVGGCVASQEGDKIRQRAQCVDIVFGPQTLHRLPEMINQV 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K +VD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 RGSKSTIVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG D + CTF++LL ++ I G+ R Sbjct: 174 VSRPCDDILLEVAQLAAQGVREVNLLGQNVNAYRGATFDDQICTFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D+ L+ +LHLPVQSG+DRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPIEFTDDIIDVYRDMPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + RPDI ISSDFI+GFPGET DF TM L+ ++ + +FSF YS R GTP +++ + V Sbjct: 294 VAARPDIQISSDFIIGFPGETQQDFEQTMKLIGEVNFDTSFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ ++ +Q ++++ +G + +L+E ++ +L GR+ + V Sbjct: 354 PEEEKKQRLYILQDRINQQAMAWSRGMLGTVQRILVEGTSRKNVMELTGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G +V Sbjct: 414 GDVRMIGKFVDVEIVDVYTNSLRGVVV 440 >gi|83648010|ref|YP_436445.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Hahella chejuensis KCTC 2396] gi|123531267|sp|Q2SBF4|MIAB_HAHCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|83636053|gb|ABC32020.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Hahella chejuensis KCTC 2396] Length = 446 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 202/448 (45%), Positives = 285/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ F+K+YGCQMN YDS RM D+ S E ++ D+AD+++LNTC IREKA EKV+ Sbjct: 3 QKLFIKTYGCQMNEYDSSRMADLLGESHSVELTDNPDEADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ +LL+ V GCVA EG+ I R+P V++V GPQT +RLPE++ Sbjct: 63 LGRWKTLK----EKNPNLLIGVGGCVASQEGDAIRDRAPYVDMVFGPQTLHRLPEMVNSV 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K +VD + +KF+RL + G +AF++I EGC K+CTFCVVPYTRG E Sbjct: 119 AHQKIPMVDVTFPEIEKFDRLPM-----PSSEGASAFVSIMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E L GV E+ LLGQNVNA+RG DG+ ++L+ ++ + G+ R Sbjct: 174 VSRPVDDVIAEIAHLAGQGVREVNLLGQNVNAYRGLTHDGDYMDLAELITYVASVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI + + L+ +LHLPVQSGSDRIL M R HT EY + R+ Sbjct: 234 IRYTTSHPVEFSDSLIDVYASVPKLVSHLHLPVQSGSDRILNLMKRGHTVAEYTDKLRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + +RPDI++SSDFIVGFPGETD DF TM+L+++IG+ +FSF YS R GTP +N+ + V Sbjct: 294 QEIRPDISLSSDFIVGFPGETDADFEETMNLINEIGFDHSFSFVYSARPGTPAANLEDNV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441 E K +RL LQ+++ + + VG +L+ K+ G+L GR+ + V Sbjct: 354 SEEAKKQRLAILQQRILQFAQDISRKMVGSTQRILVTGVSKKDPGELQGRTENNRVVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 S +H+ IG + V IT ++L GE V Sbjct: 414 SDSHDIIGRFVDVTITAALPNSLRGERV 441 >gi|113969348|ref|YP_733141.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella sp. MR-4] gi|123130674|sp|Q0HLI3|MIAB_SHESM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|113884032|gb|ABI38084.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella sp. MR-4] Length = 474 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/447 (43%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ QGY ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + DL++ V GCVA EG+ I R+ V+++ GPQT +RLP+++E+ Sbjct: 63 LGRWKTLKD----KNPDLIIGVGGCVASQEGKAIKDRAHCVDIIFGPQTLHRLPDMIEQV 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G K V+D + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 RRGEKAVIDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L + GV E+ LLGQNVNA+RG DG CTF++LL ++ I G+ R Sbjct: 174 VSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + + +I + D L+ +LHLPVQSGSDRIL +M R H A EY+ II R+ Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGET +DF TM L++ + + +FSF YS R GTP +++ + V Sbjct: 294 RKARPDIQISSDFIIGFPGETKEDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 D K +RL LQ ++ +Q + ++ +G + +L+E K +L GR+ + V Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +IG + V I DV ++L G+ + Sbjct: 414 GLPKHIGSFVDVEIVDVYTNSLRGKFI 440 >gi|53804481|ref|YP_113916.1| tRNA-i(6)A37 modification enzyme MiaB [Methylococcus capsulatus str. Bath] gi|81682096|sp|Q608N1|MIAB_METCA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|53758242|gb|AAU92533.1| tRNA-i(6)A37 modification enzyme MiaB [Methylococcus capsulatus str. Bath] Length = 458 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/449 (44%), Positives = 287/449 (63%), Gaps = 12/449 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +PQ+ +++++GCQMN YDS +M D+ S +E S ++AD+++LNTC IR+KA EKV+ Sbjct: 1 MPQKLYIETFGCQMNEYDSAKMRDLLEVSDSFELARSPEEADVLLLNTCSIRDKAQEKVF 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGR R +K R ++++ V GCVA EGE + +R+P V++V GPQT +RLP +LE Sbjct: 61 SQLGRWRPIKLRR----PEVVIGVGGCVASQEGEALQKRAPYVDIVFGPQTLHRLPSMLE 116 Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + R +R VVD + +KF+ L R G AF+++ EGC K+CTFCVVPYTRG Sbjct: 117 QVRCERRPVVDVSFPAIEKFDALP-----EPRADGPKAFVSVMEGCGKYCTFCVVPYTRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 EISR + V+ E L + GV E+ LLGQNVNA+RG DG + L++ ++ + G+ Sbjct: 172 EEISRPVDDVIAEIVALAEQGVREVNLLGQNVNAYRGVLADGGMADLALLMHYVAAVDGI 231 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP + SD LI+A D+ L+ +LHLPVQSGSDRIL+ M R HT EY + Sbjct: 232 DRIRFTTSHPVEFSDALIEAFRDIPQLVSHLHLPVQSGSDRILRLMKRGHTRAEYMAKVA 291 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R +RPD+++SSDFIVGFPGETD+DF TM L++++G+ Q+FSF +S R GTP + M + Sbjct: 292 KLREIRPDLSLSSDFIVGFPGETDEDFEDTMALIEQLGFDQSFSFIFSARPGTPAAAMAD 351 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439 V K RL LQ K+ + + VG I VL+E ++ +L GR+ + V Sbjct: 352 DVPPETKRARLARLQAKIADNAAKIGASMVGSIQSVLVEGTSRKNFNELSGRTENNRVVN 411 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V IT+ ++L G L+ Sbjct: 412 FAGHPRLIGQFVDVVITESLPNSLRGRLI 440 >gi|311280443|ref|YP_003942674.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter cloacae SCF1] gi|308749638|gb|ADO49390.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter cloacae SCF1] Length = 474 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 290/448 (64%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EG+ I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GNRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 233 RVRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPDI ISSDFIVGFPGET DDF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LREARPDIQISSDFIVGFPGETTDDFERTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VAEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G+LV Sbjct: 413 EGTPDMIGKFVDVEIVDVYPNSLRGKLV 440 >gi|251790528|ref|YP_003005249.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya zeae Ech1591] gi|247539149|gb|ACT07770.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya zeae Ech1591] Length = 476 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/449 (44%), Positives = 289/449 (64%), Gaps = 14/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS ++ D+ S GY+ + ++ADL++LNTC IREKA EKV+ Sbjct: 5 KKLHIKTWGCQMNEYDSSKIADLLESTHGYQLTDVAEEADLLLLNTCSIREKAQEKVFHQ 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ +L++ V GCVA EGE I R+ V+V+ GPQT +RLPE++ Sbjct: 65 LGRWKTLKDV----NPNLIIGVGGCVASQEGEHIRDRAHYVDVIFGPQTLHRLPEMINHV 120 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R +VD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG Sbjct: 121 Q-GTRSPIVDISFPEVEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR V+ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ Sbjct: 175 EVSRPADDVLFEIAQLAAQGVREVNLLGQNVNAYRGATHDGDICSFAELLRLVAAIDGID 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP + +D +I + D L+ +LHLPVQSGSDRIL M RRHTA EY+ II + Sbjct: 235 RIRFITSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRILTMMKRRHTALEYKAIIRK 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RP I ISSDFI+GFPGET +DF TM L+ + + +FSF YSPR GTP ++M++ Sbjct: 295 LRKARPSIQISSDFIIGFPGETQEDFEQTMQLIADVDFDISFSFIYSPRPGTPAADMVDD 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q + ++ +G + +L+E ++ +L GR+ + V Sbjct: 355 VTEEEKKQRLYILQERINQQAMQYSRRMMGTVQRILVEGTSRKNVMELSGRTENNRVVNF 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 IG + V I DV ++L G +V+ Sbjct: 415 EGTPDMIGKFVDVEIVDVYPNSLRGVVVL 443 >gi|257482205|ref|ZP_05636246.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 442 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + ++++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +RG DG +DL+ ++ + G+ R Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH ++ L+ +LHLPVQSGSDRIL +M R HT EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I+ISSDFIVGFPGET+ DF TM L++ +G+ +FSF YSPR GTP +++ + Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG I +L+ + K+ G+L GR+ + V Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I D + +L G L+ Sbjct: 414 CNNPKLIGQFANVHIDDAQPHSLRGSLL 441 >gi|59711366|ref|YP_204142.1| isopentenyl-adenosine A37 tRNA methylthiolase [Vibrio fischeri ES114] gi|197335117|ref|YP_002155521.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio fischeri MJ11] gi|75354378|sp|Q5E6U2|MIAB_VIBF1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229891024|sp|B5FBL3|MIAB_VIBFM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|59479467|gb|AAW85254.1| isopentenyl-adenosine A37 tRNA methylthiolase [Vibrio fischeri ES114] gi|197316607|gb|ACH66054.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio fischeri MJ11] Length = 474 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE +AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLGAANGYELTEEPTEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR +NLK+ + DL++ V GCVA EG+ I +R+P V+V+ GPQT +RLPE++ ++ Sbjct: 63 LGRWKNLKDKK----PDLVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIRQS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K V+D + +KF+ L + G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QSNEKPVMDISFPEIEKFDNLP-----EPKAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L + GV E+ LLGQNVNA+RG DG+ CTF++LL ++ I G+ R Sbjct: 174 VSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGDICTFAELLRMVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPLEFGDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET DF+ TM L+ + + +FSF +S R GTP ++ + Sbjct: 294 RKARPDIQISSDFIVGFPGETAKDFQDTMKLIKDVDFDMSFSFIFSARPGTPAADYPCDI 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+++ Q + ++ + VL+E K+ +L R+ + V Sbjct: 354 PEQEKKDRLAELQQQVNSQAMRYSRLMLDTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GELV Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGELV 440 >gi|330960147|gb|EGH60407.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 442 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + ++++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +RG DG +DL+ ++ + G+ R Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH ++ L+ +LHLPVQSGSDRIL +M R HT EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I+ISSDFIVGFPGET+ DF TM L++ +G+ +FSF YSPR GTP +++ + Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFIYSPRPGTPAADLQDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG I +L+ + K+ G+L GR+ + V Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I D + +L G L+ Sbjct: 414 CNNPKLIGQFADVHIDDAQPHSLRGSLL 441 >gi|256821541|ref|YP_003145504.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Kangiella koreensis DSM 16069] gi|256795080|gb|ACV25736.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Kangiella koreensis DSM 16069] Length = 446 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/448 (44%), Positives = 294/448 (65%), Gaps = 12/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS RM D+ + G E S ++AD+++LNTC IREKA EKV+S Sbjct: 3 KKLFIKTWGCQMNEYDSSRMSDLLNKTHGLEAAASAEEADVVLLNTCSIREKAQEKVFSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ +NLK + DL++ V GCVA EGE I +R+P V+V+ GPQT +RLPE++ +A Sbjct: 63 LGQWKNLK----QNNPDLIIGVGGCVASQEGEAIRQRAPYVDVIFGPQTLHRLPEMIMQA 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K+ VVD + +KF+RL R G TAF+++ EGC K+C+FCVVPYTRG E Sbjct: 119 SGQKKAVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSVMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E +L + GV EI LLGQNVNA+RG +G+ ++L+ ++ I G+ R Sbjct: 174 VSRPFDDVLAECAQLAEQGVREINLLGQNVNAYRGITHEGDTADLAELITYVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + S+ LI+ + ++ L+ +LHLPVQSGSDR+L M R HT EY+ I ++ Sbjct: 234 IRYTTSHPVEFSERLIQVYAEVPELVSHLHLPVQSGSDRVLAMMKRGHTVLEYKSKIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RPDI++SSDFI+GFPGE+D DF TM+L+ IGY +FSF YS R GTP +++++ Sbjct: 294 RQIRPDISMSSDFIIGFPGESDQDFEDTMNLIGDIGYDHSFSFIYSARPGTPAADIVDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN 441 +VK +RL LQ+++ +Q S + +G +VL+E K+ +L GR+ + V Sbjct: 354 PMDVKKQRLSILQQRINQQAFSISRNMIGTKQKVLVEGPSKKDPMELRGRTENNRIVNFV 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469 + IG +V ITD ++L G+ V Sbjct: 414 GPHSLIGKFAEVTITDAFPNSLRGDFVT 441 >gi|259909112|ref|YP_002649468.1| Putative tRNA-thiotransferase [Erwinia pyrifoliae Ep1/96] gi|224964734|emb|CAX56251.1| Putative tRNA-thiotransferase [Erwinia pyrifoliae Ep1/96] Length = 480 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY +DAD+++LNTC IREKA EKV+ Sbjct: 9 KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFGL 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK + D+++ V GCVA EG +I +R+ V++V GPQT +RLPE++ Sbjct: 69 LGRWKKLKEA----NPDVIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMINSV 124 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VVD + +KF+R+ R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 125 RGTKSPVVDVSFPEIEKFDRMP-----EPRANGPTAFVSIMEGCNKYCTFCVVPYTRGEE 179 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E +L GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R Sbjct: 180 VSRPADDVLFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVATIDGIDR 239 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I+ + D L+ +LHLPVQSG+DRIL M R HTA EY+ II ++ Sbjct: 240 IRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 299 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + RPDI ISSDFI+GFPGE DF TM LV +I + ++SF YS R GTP +++ + V Sbjct: 300 LAARPDIQISSDFIIGFPGENQADFEQTMKLVGEINFDTSYSFIYSARPGTPAADLPDDV 359 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ ++ +Q ++++ +G + +L+E ++ +L GR+ + V Sbjct: 360 SEEEKKQRLYILQDRISQQAMAWSRRKLGTVQRILVEGTSRKSVMELAGRTECNRVVNFE 419 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +IG + V ITDV ++L G L+ Sbjct: 420 GAPEHIGKFVDVEITDVYANSLRGVLL 446 >gi|121608687|ref|YP_996494.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Verminephrobacter eiseniae EF01-2] gi|229891021|sp|A1WIL9|MIAB_VEREI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|121553327|gb|ABM57476.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Verminephrobacter eiseniae EF01-2] Length = 450 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/446 (43%), Positives = 289/446 (64%), Gaps = 15/446 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ + QGYE ++++ADLI+ NTC +REKA EKV+S Sbjct: 3 KKVFIKTFGCQMNEYDSDKMADVLHAAQGYEPTQNVEEADLILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+++LK ++ G V GCVA EG EI+RR+P V+VV GPQT +RLPELL+ R Sbjct: 63 LGRVKHLKARGVRIG------VGGCVASQEGAEIIRRAPYVDVVFGPQTLHRLPELLQQR 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + +D + +KF+ L +G +AF++I EGC K+C++CVVPYTRG E Sbjct: 117 ERLDQPQIDISFPEIEKFDHLPAAS-----VQGASAFVSIMEGCSKYCSYCVVPYTRGEE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR L V+ E L D GV E+TLLGQNVNA+RG+ G ++ + LL ++ I G+ Sbjct: 172 VSRPLDDVLVEVAGLADQGVKEVTLLGQNVNAYRGRMGSTAQRADLALLLDYVAGIPGVE 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP + + LI+A+ L L +LHLPVQ GSDRIL +M R +TA EY+ + + Sbjct: 232 RIRYTTSHPNEFTPRLIEAYARLPKLANHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRK 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+A+SSDFIVGFPGET DDF M L+ ++ + +FSF +SPR GTP + + + Sbjct: 292 LRAIRPDLALSSDFIVGFPGETQDDFDKLMRLIAEVHFDNSFSFVFSPRPGTPAAGLPDD 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440 VK RL LQ + S + + VG + +L+E ++ +L+GR+ + V Sbjct: 352 TPHEVKLRRLQQLQGVIDTHIRSISASRVGTVQRILVEGASRRDAAELMGRTECNRVVNF 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466 H +G ++++ IT+ + TL G+ Sbjct: 412 AGPPHLVGQMVELTITEARAYTLRGQ 437 >gi|71735074|ref|YP_276503.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|289625797|ref|ZP_06458751.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648418|ref|ZP_06479761.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. aesculi str. 2250] gi|123635051|sp|Q48DN8|MIAB_PSE14 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|71555627|gb|AAZ34838.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas syringae pv. phaseolicola 1448A] gi|330867193|gb|EGH01902.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871081|gb|EGH05790.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330987620|gb|EGH85723.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 442 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + ++++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +RG DG +DL+ ++ + G+ R Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH ++ L+ +LHLPVQSGSDRIL +M R HT EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I+ISSDFIVGFPGET+ DF TM L++ +G+ +FSF YSPR GTP +++ + Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG I +L+ + K+ G+L GR+ + V Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I D + +L G L+ Sbjct: 414 CNNPKLIGQFADVHIDDAQPHSLRGSLL 441 >gi|301631123|ref|XP_002944656.1| PREDICTED: (Dimethylallyl)adenosine tRNA methylthiotransferase miaB-like, partial [Xenopus (Silurana) tropicalis] Length = 437 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 203/446 (45%), Positives = 285/446 (63%), Gaps = 18/446 (4%) Query: 30 KSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 K++GCQMN YDS +M + +QG E + + ADLI+ NTC +REKA EKV+S LGRI+ Sbjct: 1 KTFGCQMNEYDSDKMVAVLGAAQGDEPTDDPEAADLILFNTCSVREKAQEKVFSDLGRIK 60 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGK 147 +LK + L+ V GCVA EG EI++R+P V+VV GPQT +RLPELL RA K Sbjct: 61 HLKEKGV------LIGVGGCVASQEGAEIIQRAPFVDVVFGPQTLHRLPELLNARAAKAK 114 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E+SR Sbjct: 115 PQVDISFPEIEKFDHLPPA-----RVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPF 169 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGK----GLDGEKCTFSDLLYSLSEIKGLVRL 263 V+ E L D GV E+TLLGQNVNA+RG +GEK F+ LL ++EI G+ R+ Sbjct: 170 EDVLVEVAGLADQGVKEVTLLGQNVNAYRGAMGNTAENGEKADFALLLEYVAEIPGIERI 229 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP + + LI+A+ + L+ +LHLPVQ GSDRIL +M R ++A EY+ + ++R Sbjct: 230 RYTTSHPNEFTPRLIEAYAKIPKLVSHLHLPVQHGSDRILMAMKRGYSAMEYKSTVRKLR 289 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++RPD+A+SSDFIVGFPGET++DF+ M L+ + + +FSF +SPR GTP +N+ + Sbjct: 290 AIRPDMAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLPDDTP 349 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442 +VK RL LQ + + + VG + +L+E H K G+L+GR+ + V Sbjct: 350 HDVKLRRLQELQAVINQHIKDISLERVGTVQRLLVEGHSKRGNGELMGRTECHRVVNFPG 409 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG II V+IT+ TL GE++ Sbjct: 410 HTRLIGQIIDVKITEAMTYTLRGEVL 435 >gi|298489005|ref|ZP_07007028.1| tRNA-i(6)A37 methylthiotransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156503|gb|EFH97600.1| tRNA-i(6)A37 methylthiotransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 442 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + ++++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +RG DG +DL+ ++ + G+ R Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH ++ L+ +LHLPVQSGSDRIL +M R HT EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I+ISSDFIVGFPGET+ DF TM L++ +G+ +FSF YSPR GTP +++ + Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG I +L+ + K+ G+L GR+ + V Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I D + +L G L+ Sbjct: 414 CNNPKLIGQFADVHIDDAQPHSLRGSLL 441 >gi|89092053|ref|ZP_01165008.1| hypothetical protein MED92_07796 [Oceanospirillum sp. MED92] gi|89083788|gb|EAR63005.1| hypothetical protein MED92_07796 [Oceanospirillum sp. MED92] Length = 455 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 200/447 (44%), Positives = 284/447 (63%), Gaps = 13/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS RM D+ S E DDAD+++LNTC IREKA EKV+ Sbjct: 3 KKLFIKTHGCQMNEYDSARMADLLGESHDLELTEDADDADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR R LK + +L + V GCVA EG+ IL+R+P V+++ GPQT +RLPE++ E Sbjct: 63 LGRWRKLKEN----NPNLKIGVGGCVASQEGDNILKRAPYVDMIFGPQTLHRLPEMITET 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +VD + +KF+ L + G AF+++ EGC K+CTFCVVPYTRG E Sbjct: 119 GAGGVGIVDVSFPEIEKFDHLPA-----PKVEGAEAFVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L + GV E+ LLGQNVNA+ G+ DG+ ++L+ ++ ++G+ R Sbjct: 174 VSRPLDDVITECVELAEQGVREVNLLGQNVNAYLGETHDGDTADLAELIRCVAAVEGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D LI+A+ D+ L+ +LHLPVQSGSD+IL +M R HTA EY+ I RI Sbjct: 234 IRFTTSHPVEFTDSLIEAYEDVPELVSFLHLPVQSGSDKILMAMKRGHTALEYKSKIRRI 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFP ETD DF ATM L++ IG+ ++SF YS R GTP S++ + + Sbjct: 294 RKARPDIEISSDFIIGFPNETDTDFAATMKLIEDIGFDNSYSFIYSRRPGTPASDLPDNI 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 DE K ERL LQ ++ + + VG +L+ + K+ G L GR+ + V Sbjct: 354 DEETKKERLKILQSRIIQNAQLISRRMVGSTQTILVNGYSKKDPGLLSGRTENNRVVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGEL 467 N + IG V I + ++L G+L Sbjct: 414 CDNPDLIGHFADVEIVEAYANSLVGKL 440 >gi|291612929|ref|YP_003523086.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sideroxydans lithotrophicus ES-1] gi|291583041|gb|ADE10699.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sideroxydans lithotrophicus ES-1] Length = 446 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 207/449 (46%), Positives = 286/449 (63%), Gaps = 16/449 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +K+YGCQMN YDS +M D+ + + + + ++AD+I+ NTC IREKA EKV+S L Sbjct: 7 KLHIKTYGCQMNEYDSDKMVDVLRACENMVQTDKPEEADIILFNTCSIREKAEEKVFSDL 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143 GR R LK + + LL+ V GCVA EGE I++R+P V+VV GPQT +RLP+L+ R Sbjct: 67 GRARVLKQANPR----LLIGVGGCVASQEGEAIIKRAPYVDVVFGPQTLHRLPQLIAARR 122 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK VD + +KF+ + + TAF++I EGC K+CTFCVVPYTRG E+ Sbjct: 123 ESGKPQVDISFPEIEKFDHVPAAQTTHG-----TAFVSIMEGCSKYCTFCVVPYTRGEEM 177 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + V+ E LI GV EITLLGQNVNA++G+ DG+ F+ LL +++ + G+ RL Sbjct: 178 SRPYADVMREVESLIAQGVGEITLLGQNVNAYQGETDDGDTVDFAFLLQTVAALPGVQRL 237 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPR+MS LI + L +LHLPVQSGSDRIL +M R +TA EY+ I+ ++R Sbjct: 238 RYTTSHPREMSQRLIDLYATTPKLASHLHLPVQSGSDRILAAMKRGYTALEYKSIVRKLR 297 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + RP+I+I+SDFIVGFPGETD DF ATM L+D + + +FSF +S R GTP + M + Sbjct: 298 AARPEISITSDFIVGFPGETDADFEATMKLIDDVAFDASFSFIFSARPGTPAAEMADDTP 357 Query: 384 ENVKAERLLCLQKKLRE--QQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL LQ ++ E QQVS +A G + V++E K + +L GR+ + V Sbjct: 358 YETKLARLHRLQARIAELGQQVS--EAMSGTVQRVVVENISRKSEHELAGRTANNRVVNF 415 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 +G + VRI + TL GELV+ Sbjct: 416 VGSPGMLGRYVDVRILSGTLHTLRGELVM 444 >gi|169632399|ref|YP_001706135.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter baumannii SDF] gi|229890410|sp|B0VQX2|MIAB_ACIBS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|169151191|emb|CAO99868.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter baumannii] Length = 483 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/455 (43%), Positives = 298/455 (65%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GCQMN YDS RM D+ S GY N+ ++AD++++NTC IREKA EKV+S Sbjct: 31 KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTNNPNEADILLMNTCSIREKAQEKVFSE 90 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 LGR R LK ++ DL++ V GCVA EG+ I +R+P V+++ GPQT +RLP++L++ Sbjct: 91 LGRWRKLK----EQNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146 Query: 143 -ARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 A+ K ++VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 147 HAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EI+LLGQNVN +RG+ +G CTF +LL ++ Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI G+ RLRYTTSHP + SD LI+ + DL ++ +LHLPVQSGS+ +LK+M R HT Y Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLKAMKRNHTIDVY 321 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I ++R +RPD+ +SSDFI+GFPGETD++F T+ + +G+ ++SF YS R GTP Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLGFDHSYSFVYSKRPGTPA 381 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 S++ + E+VK ERL +Q+ +++ + DA +G+I VLIEK ++ LVG + Sbjct: 382 SDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILVGTADN 441 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 + V +G ++ IT++K ++ +YGEL+ Sbjct: 442 TRLVTFVGDASRVGRFAEIEITEIKTLNLVYGELL 476 >gi|119470866|ref|ZP_01613477.1| involved in methylthiolation of isopentenylated A37 derivatives in tRNA, Fe-S protein [Alteromonadales bacterium TW-7] gi|119446093|gb|EAW27372.1| involved in methylthiolation of isopentenylated A37 derivatives in tRNA, Fe-S protein [Alteromonadales bacterium TW-7] Length = 482 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 290/448 (64%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M ++ + GY+ DAD+I+LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSQKMAELLDATNGYQLTEDATDADVILLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +L++ V GCVA EG+ I +R+P V+V+ GPQT +RLPE++++ Sbjct: 63 LGRWKLLKDDK----PELIIGVGGCVASQEGDSIRQRAPFVDVIFGPQTLHRLPEMIKQV 118 Query: 144 RF--GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VVD + +KF+RL + G +AF++I EGC K+CTFCVVPYTRG Sbjct: 119 QGNKGSSVVDISFPEIEKFDRLP-----EPKAEGPSAFVSIMEGCSKYCTFCVVPYTRGE 173 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR + V+ E +L + GV E+ LLGQNVNA+RG DG+ C FSDL+ ++ I G+ Sbjct: 174 EVSRPVDDVLLEVAQLAEQGVREVNLLGQNVNAYRGDTHDGDICYFSDLIRLIAAIDGID 233 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP + + +I A+ D+ L+ +LHLPVQSGSDRIL M R HTA EY+ I + Sbjct: 234 RIRYTTSHPVEFTPDIIDAYADVPELVDHLHLPVQSGSDRILNLMKRGHTALEYKSTIRK 293 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R +RP++++SSDFI+GFPGE+ DF ATM+L++ IG+ +FSF YS R GTP +++ + Sbjct: 294 LRKIRPNLSMSSDFIIGFPGESKADFEATMNLINDIGFDMSFSFIYSARPGTPAADLPDD 353 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440 V E K ERL LQ ++ + + +L+E K+ +L GR+ + V Sbjct: 354 VTEQEKKERLYLLQNRITQMAQHISRQMFDTEQRILVEGPSKKNPMELRGRTENNRVVNF 413 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG + VRIT+ ++L G+L+ Sbjct: 414 VGPHSVIGQFVDVRITEALPNSLRGDLI 441 >gi|188534464|ref|YP_001908261.1| Putative tRNA-thiotransferase [Erwinia tasmaniensis Et1/99] gi|188029506|emb|CAO97383.1| Putative tRNA-thiotransferase [Erwinia tasmaniensis Et1/99] Length = 480 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/448 (43%), Positives = 289/448 (64%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY +DAD+++LNTC IREKA EKV++ Sbjct: 9 KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFAL 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK S D+++ V GCVA EG +I +R+ V++V GPQT +RLPE++ Sbjct: 69 LGRWKKLKES----NPDMIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMINSV 124 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+R+ R G TAF++I EGC+K+CTFCVVPYTRG Sbjct: 125 R-GTRSPVVDVSFPEIEKFDRMP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGE 178 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNA+RG+ DG C+F++LL ++ I G+ Sbjct: 179 EVSRPSDDILFEVAQLAAQGVREVNLLGQNVNAYRGETFDGGICSFAELLRLVAAIDGID 238 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I + D L+ +LHLPVQSG+DRIL M R HTA EY+ II + Sbjct: 239 RIRFTTSHPIEFNDDIIDVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRK 298 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 + + RP+I ISSDFI+GFPGET DF TM L+ +I + ++SF YS R GTP +++ + Sbjct: 299 LLAARPNIQISSDFIIGFPGETQADFEQTMKLIGEINFDISYSFIYSARPGTPAADLPDD 358 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E+ K +RL LQ ++ +Q +++ +G + +L+E ++ +L GR+ + V Sbjct: 359 VSEDEKKQRLYILQDRINQQTTAWSRRKLGTVQRILVEGTSRKNVMELSGRTECNRVVNF 418 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +IG + V ITDV ++L G L+ Sbjct: 419 EGSPEHIGKFVDVEITDVYANSLRGMLL 446 >gi|229890678|sp|Q3IK75|MIAB_PSEHT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 482 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 288/448 (64%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M ++ + GY+ + DAD+I+LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSQKMAELLDATNGYQLTDDATDADVILLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + DL++ V GCVA EG+ I +R+P V+V+ GPQT +RLPE++++ Sbjct: 63 LGRWKLLKDDK----PDLIIGVGGCVASQEGDSIRQRAPFVDVIFGPQTLHRLPEMIKQV 118 Query: 144 R--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VVD + +KF+RL + G +AF++I EGC K+CTFCVVPYTRG Sbjct: 119 QGDKGSSVVDISFPEIEKFDRLP-----EPKADGPSAFVSIMEGCSKYCTFCVVPYTRGE 173 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR + V+ E +L + V E+ LLGQNVNA+RG DGE C FSDL+ ++ I G+ Sbjct: 174 EVSRPVDDVLLEIAQLAEQSVREVNLLGQNVNAYRGDTHDGEICYFSDLIRLIAAIDGID 233 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP + + ++ + D+ L+ +LHLPVQSGSDRIL M R HTA EY+ I + Sbjct: 234 RIRYTTSHPVEFTQDIVDVYADVPELVDHLHLPVQSGSDRILNLMKRGHTAIEYKSTIRK 293 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R +RP++++SSDFI+GFPGET DDF ATM L+ +G+ +FSF YS R GTP +++ + Sbjct: 294 LRKIRPNLSMSSDFIIGFPGETQDDFEATMKLISDVGFDMSFSFIYSARPGTPAADLPDD 353 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440 V E K ERL LQ ++ + + +L+E K+ +L GR+ + V Sbjct: 354 VTEQEKKERLYLLQNRITQMAQQISRQMFDTEQRILVEGPSKKNPMELRGRTENNRVVNF 413 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG + VRIT+ ++L G+L+ Sbjct: 414 VGPHTVIGQFVDVRITEALPNSLRGDLI 441 >gi|294669853|ref|ZP_06734912.1| hypothetical protein NEIELOOT_01746 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308246|gb|EFE49489.1| hypothetical protein NEIELOOT_01746 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 440 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 200/450 (44%), Positives = 287/450 (63%), Gaps = 17/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V D+AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSEKMLSVLEEEHGGIEQVAEPDEADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE- 141 LGR+R LK+ + DL++ VAGCVA EGE I++R+P V++V GPQT +RLP L++ Sbjct: 62 DLGRVRPLKDKK----PDLIIGVAGCVASQEGEAIVKRAPFVDIVFGPQTLHRLPRLIDD 117 Query: 142 RARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + G VD + +KF+ L + VDGG +AF++I EGC K+C+FCVVPYTR Sbjct: 118 KKETGLPQVDISFPEIEKFDHLPPARVDGG-------SAFISIMEGCSKYCSFCVVPYTR 170 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR L+ V+ E L GV EI LLGQNVNA+RG DGE C F+ LL + EI G Sbjct: 171 GEEFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGLMDDGEVCDFATLLRIVHEIPG 230 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+TTSHPR+ SD +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II Sbjct: 231 IERIRFTTSHPREFSDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSII 290 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ Sbjct: 291 RKLRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLH 350 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438 + K RL L + + + N VG + L+E K+ +L R+ + V Sbjct: 351 DDTPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGVSKKDPEQLQARTANNRVV 410 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 I +++++IT +L GEL+ Sbjct: 411 NFVGNPELINQMVEIKITGAFTFSLRGELL 440 >gi|302185143|ref|ZP_07261816.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. syringae 642] Length = 442 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + ++++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RVTRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +RG DG +DL+ ++ + G+ R Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH ++ L+ +LHLPVQSGSDRIL +M R HT EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I+ISSDFIVGFPGET+ DF TM L++ +G+ +FSF YSPR GTP +++ + Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG I +L+ + K+ G+L GR+ + V Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I D + +L G L+ Sbjct: 414 CANPKLIGQFADVHIDDAQPHSLRGSLL 441 >gi|332532467|ref|ZP_08408345.1| tRNA-i(6)A37 methylthiotransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332038110|gb|EGI74557.1| tRNA-i(6)A37 methylthiotransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 482 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/448 (43%), Positives = 288/448 (64%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M ++ + GY+ DAD+I+LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSQKMAELLDATNGYQLTEDATDADVILLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + DL++ V GCVA EG+ I +R+P V+V+ GPQT +RLPE++++ Sbjct: 63 LGRWKLLKDDK----PDLIIGVGGCVASQEGDSIRQRAPFVDVIFGPQTLHRLPEMIKQV 118 Query: 144 R--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VVD + +KF+RL + G +AF++I EGC K+CTFCVVPYTRG Sbjct: 119 QGDKGSSVVDISFPEIEKFDRLP-----EPKADGPSAFVSIMEGCSKYCTFCVVPYTRGE 173 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR + V+ E +L + GV E+ LLGQNVNA+RG DGE C FSDL+ ++ I G+ Sbjct: 174 EVSRPVDDVLLEVAQLAEQGVREVNLLGQNVNAYRGDTHDGEICYFSDLIRLIAAIDGID 233 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP + + +I + D+ L+ +LHLPVQSGSDRIL M R HTA EY+ I + Sbjct: 234 RIRYTTSHPVEFTPDIIDVYADVPELVDHLHLPVQSGSDRILNLMKRGHTAIEYKSTIRK 293 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R +RP++++SSDFI+GFPGE+ +DF ATM L+ IG+ +FSF YS R GTP +++ + Sbjct: 294 LRKIRPNLSMSSDFIIGFPGESKEDFEATMKLISDIGFDMSFSFIYSARPGTPAADLPDD 353 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440 V E K ERL LQ ++ + + +L+E K+ +L GR+ + V Sbjct: 354 VTEQEKKERLYLLQNRITQMAQQISRQMFDTEQRILVEGPSKKNPMELRGRTENNRVVNF 413 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG + VRIT+ ++L G+L+ Sbjct: 414 VGPHTVIGQFVDVRITEALPNSLRGDLI 441 >gi|320322684|gb|EFW78777.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. glycinea str. B076] gi|320330531|gb|EFW86510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. glycinea str. race 4] gi|330873660|gb|EGH07809.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 442 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + ++++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDVA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +RG DG +DL+ ++ + G+ R Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH ++ L+ +LHLPVQSGSDRIL +M R HT EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I+ISSDFIVGFPGET+ DF TM L++ +G+ +FSF YSPR GTP +++ + Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG I +L+ + K+ G+L GR+ + V Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I D + +L G L+ Sbjct: 414 CNNPKLIGQFADVHIDDAQPHSLRGSLL 441 >gi|29653907|ref|NP_819599.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii RSA 493] gi|153208814|ref|ZP_01947041.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii 'MSU Goat Q177'] gi|161830593|ref|YP_001596498.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Coxiella burnetii RSA 331] gi|165919097|ref|ZP_02219183.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii RSA 334] gi|212212941|ref|YP_002303877.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Coxiella burnetii CbuG_Q212] gi|212218810|ref|YP_002305597.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Coxiella burnetii CbuK_Q154] gi|81629338|sp|Q83DX3|MIAB_COXBU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890502|sp|B6J853|MIAB_COXB1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890503|sp|B6J1A4|MIAB_COXB2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890505|sp|A9NC58|MIAB_COXBR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|29541170|gb|AAO90113.1| tRNA 2-methylthioadenosine synthase [Coxiella burnetii RSA 493] gi|120575720|gb|EAX32344.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii 'MSU Goat Q177'] gi|161762460|gb|ABX78102.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii RSA 331] gi|165917231|gb|EDR35835.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coxiella burnetii RSA 334] gi|212011351|gb|ACJ18732.1| tRNA 2-methylthioadenosine synthase [Coxiella burnetii CbuG_Q212] gi|212013072|gb|ACJ20452.1| tRNA 2-methylthioadenosine synthase [Coxiella burnetii CbuK_Q154] Length = 439 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/446 (44%), Positives = 282/446 (63%), Gaps = 12/446 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ FS G E AD+ +LNTC +REKA KV+S Sbjct: 2 KKLYLKTHGCQMNEYDSAKMADVLKFSHGLELTEDPAVADVFLLNTCSVREKAQTKVFSE 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R K R +++ V GCVA EGE IL+++P V++V GPQT +RLP+LL+ Sbjct: 62 LGRWRPFKEKR----PHVVIGVGGCVASQEGETILKQAPFVDIVFGPQTLHRLPDLLDSV 117 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K VVD + +KF+RL R G +AF++I EGC K+CTFCVVPYTRG E Sbjct: 118 IQKRKSVVDITFPEIEKFDRLP-----QPRAEGPSAFVSIMEGCSKYCTFCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR V+ E L + GV EITLLGQNVN +RG DG+ + L++ L+ + + R Sbjct: 173 ISRPFDDVIAEVASLCEQGVREITLLGQNVNDYRGLMHDGQVADLALLIHYLAAMDNIER 232 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP S+ LI A+ + L +LHLPVQSGSDRIL +M R +T EY+ I ++ Sbjct: 233 IRFTTSHPSAFSENLIDAYAEEPKLANHLHLPVQSGSDRILAAMKRNYTVLEYKSKIRKL 292 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+VRPDI++SSDFI+GFPGETD DF ATM+L+ +G+ +FSF YSPR GTP + + + V Sbjct: 293 RAVRPDISLSSDFIIGFPGETDADFEATMNLIHDMGFDHSFSFIYSPRPGTPAAQLPDDV 352 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441 VK ERL LQ ++ + + + VG +L+ K+ +L GR+ + V N Sbjct: 353 PMAVKKERLAILQNRINAKAAEISQSMVGTQQRILVTGPSKKYPDQLSGRTENNRVVNFN 412 Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467 IG ++ ++I + + +L+GE+ Sbjct: 413 GDTPLIGQMVTIKIKEARPYSLWGEI 438 >gi|206559304|ref|YP_002230065.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia cenocepacia J2315] gi|229890458|sp|B4EBG2|MIAB_BURCJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|198035342|emb|CAR51217.1| putative tRNA thiotransferase protein MiaB [Burkholderia cenocepacia J2315] Length = 457 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/454 (44%), Positives = 294/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + K G LL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ Sbjct: 63 LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALAAGSSEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGET+DDF M LV ++GY +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEDDFDKMMALVHEMGYDTSFSFIYSPRPGTPAANLAD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 +VK +RL LQ + E + + VG++ +L+E K+ +L GR+ + V Sbjct: 354 DTPRDVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L S IG +I V+I +L GELV+ Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELVI 447 >gi|291085698|ref|ZP_06353781.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Citrobacter youngae ATCC 29220] gi|291070181|gb|EFE08290.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Citrobacter youngae ATCC 29220] Length = 490 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 192/449 (42%), Positives = 291/449 (64%), Gaps = 14/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 17 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 76 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ +L++ V GCVA EG+ I +R+ V+++ GPQT +RLPE++ + Sbjct: 77 LGRWKLLK----EKNPNLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINKV 132 Query: 144 RFGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R VVD + +KF+RL R G +AF++I EGC+K+CT+CVVPYTRG Sbjct: 133 RGSTSRSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTYCVVPYTRG 187 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 188 EEVSRPADDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGI 247 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP + +D +++ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II Sbjct: 248 DRIRFTTSHPIEFTDDIVEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 307 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R+ RPDI ISSDFIVGFPGET DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 308 KLRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVD 367 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439 V E K +RL LQ+++ +Q ++++ VG +L+E ++ +L GR+ + V Sbjct: 368 DVPEEEKKQRLYILQERINQQAMAWSRRMVGTTQRILVEGTSRKSIMELSGRTENNRVVN 427 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 +G + V ITDV ++L G++V Sbjct: 428 FEGAPEMVGKFVDVEITDVWTNSLRGKVV 456 >gi|66047572|ref|YP_237413.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. syringae B728a] gi|75500577|sp|Q4ZN97|MIAB_PSEU2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|63258279|gb|AAY39375.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification enzyme MiaB [Pseudomonas syringae pv. syringae B728a] gi|330953005|gb|EGH53265.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae Cit 7] gi|330969456|gb|EGH69522.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 442 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + ++++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RVTRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +RG DG +DL+ ++ + G+ R Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH ++ L+ +LHLPVQSGSDRIL +M R HT EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I+ISSDFIVGFPGET+ DF TM L++ +G+ +FSF YSPR GTP +++ + Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG I +L+ + K+ G+L GR+ + V Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I D + +L G L+ Sbjct: 414 CDNPKLIGQFADVHIDDAQPHSLRGSLL 441 >gi|229890685|sp|B2VBL4|MIAB_ERWT9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 474 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/448 (43%), Positives = 289/448 (64%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY +DAD+++LNTC IREKA EKV++ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFAL 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK S D+++ V GCVA EG +I +R+ V++V GPQT +RLPE++ Sbjct: 63 LGRWKKLKES----NPDMIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+R+ R G TAF++I EGC+K+CTFCVVPYTRG Sbjct: 119 R-GTRSPVVDVSFPEIEKFDRMP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNA+RG+ DG C+F++LL ++ I G+ Sbjct: 173 EVSRPSDDILFEVAQLAAQGVREVNLLGQNVNAYRGETFDGGICSFAELLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I + D L+ +LHLPVQSG+DRIL M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFNDDIIDVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 + + RP+I ISSDFI+GFPGET DF TM L+ +I + ++SF YS R GTP +++ + Sbjct: 293 LLAARPNIQISSDFIIGFPGETQADFEQTMKLIGEINFDISYSFIYSARPGTPAADLPDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E+ K +RL LQ ++ +Q +++ +G + +L+E ++ +L GR+ + V Sbjct: 353 VSEDEKKQRLYILQDRINQQTTAWSRRKLGTVQRILVEGTSRKNVMELSGRTECNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +IG + V ITDV ++L G L+ Sbjct: 413 EGSPEHIGKFVDVEITDVYANSLRGMLL 440 >gi|56460049|ref|YP_155330.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Idiomarina loihiensis L2TR] gi|81363034|sp|Q5QYC5|MIAB_IDILO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|56179059|gb|AAV81781.1| 2-methylthioadenine synthetase [Idiomarina loihiensis L2TR] Length = 479 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 294/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M ++ S GY+ +DADLI+LNTC IREKA EKV+ Sbjct: 3 KKLYIKTWGCQMNEYDSTKMAELLHSTHGYDVAEEAEDADLILLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 LGR +NLK K +LL+ V GCVA EG EI R+P V+++ GPQT +RLPE++ + Sbjct: 63 LGRWKNLK----KNNPNLLIGVGGCVASQEGNEIRARAPFVDIIFGPQTLHRLPEMVNQV 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + +VD + +KF+RL+ + G +AF++I EGC K+C+FCVVPYTRG E Sbjct: 119 SETHAPMVDVSFPEIEKFDRLA-----EPKADGASAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG+ DGE C F++LL+ ++ I G+ R Sbjct: 174 VSRPVDDVIYEIAQLAEQGVREVNLLGQNVNAYRGEHYDGEVCRFAELLHLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + +D + +A+ + L+ +LHLPVQSGSDRIL M R HTA EY+ I + Sbjct: 234 IRYTTSHPVEFTDDITEAYKTIPELVSHLHLPVQSGSDRILTMMKRGHTALEYKSKIRAL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + RPDIA+SSDFI+GFPGE+D DF ATMDL+ I + +FSF YS R GTP +++ + + Sbjct: 294 KKARPDIAMSSDFIIGFPGESDADFEATMDLIQSIDFDMSFSFIYSARPGTPAADLPDDI 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441 E K +RL LQ++L +Q ++ + +L+ K+ +L GR+ + V Sbjct: 354 SEETKKKRLQLLQQRLNQQSMAHARRMLETEQRILVTGPSKKNPMELTGRTENNRVVNFV 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + H IG + VRIT+V ++L GEL+ Sbjct: 414 GQPHMIGQFVDVRITEVLPNSLRGELI 440 >gi|330445221|ref|ZP_08308873.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489412|dbj|GAA03370.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 474 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 200/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + G+E ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + DL++ V GCVA EG+ I +R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PDLVIGVGGCVATQEGDSIRQRAPYVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D + +KF+ L R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QSDDAPVMDISFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L + GV E+ LLGQNVNA+RG DGE +F++LL ++ I G+ R Sbjct: 174 VSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGVMHDGEIASFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ I ++ Sbjct: 234 IRYTTSHPIEFTDDIIEVYKDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSKIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIV FPGETD DF+ TM L+ + + +FSF +S R GTP ++ + Sbjct: 294 RQARPDITISSDFIVAFPGETDQDFQDTMKLIRDVDFDMSFSFIFSARPGTPAADYPCDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E VK ERL LQ+++ Q + ++ +G +L+E K+ +L GR+ + V Sbjct: 354 TEEVKKERLYELQQQINTQAMRYSRQMLGTEQRILVEGPSKKNVMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GELV Sbjct: 414 GSADLIGQFVDVKITDVFTNSLRGELV 440 >gi|300705107|ref|YP_003746710.1| isopentenyl-adenosine a37 tRNA methylthiolase, Fe-S protein [Ralstonia solanacearum CFBP2957] gi|299072771|emb|CBJ44126.1| isopentenyl-adenosine A37 tRNA methylthiolase, Fe-S protein [Ralstonia solanacearum CFBP2957] Length = 460 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 203/455 (44%), Positives = 288/455 (63%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ ++G ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIKTFGCQMNEYDSDKMADVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSD 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR++ LK DL+V V GCVA EG I+ R+P V+VV GPQT +RLPEL++ R Sbjct: 62 LGRVKALK----ALNPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPELIDAR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 118 RRTGRPQVDVSFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L + GV E+TLLGQNVNA+ GK G E+ F+ LL ++EI G+ Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYVGKMGNTSERADFALLLEYVAEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP++ + LI+A+ L+ +LHLPVQ GSDRIL +M R +T EY+ II + Sbjct: 233 RIRYTTSHPKEFTSRLIEAYATNRKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPDI+I++D IVGFPGETD DF TMDLV +IGY +FSF YSPR GTP +N+ + Sbjct: 293 LRTIRPDISIATDIIVGFPGETDADFAKTMDLVHEIGYDNSFSFIYSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433 VK ERL LQ + ++ VG + +L+E K+ +L GR+ Sbjct: 353 TPHAVKLERLKHLQATIDANMARISEGMVGSVQRILVEGPSRKDPSELHGRTENNRVVNF 412 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 L + ++ +G ++ VRI +L GE+ Sbjct: 413 ALPDLPPARRDQLVGQMLDVRIVHAYPHSLRGEVA 447 >gi|94676510|ref|YP_588543.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|229890429|sp|Q1LU21|MIAB_BAUCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|94219660|gb|ABF13819.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 451 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/446 (44%), Positives = 288/446 (64%), Gaps = 12/446 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +K+YGCQMN YDS ++ D+ + Y+ + ++AD+++LNTC IREKA EK++ L Sbjct: 4 KLHIKTYGCQMNQYDSSKIVDLLKNTHKYQLTDIAEEADILLLNTCSIREKAQEKLFHQL 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR R LK K +L++ V GCVA EG I R+ V+++ GPQT +RLPE++ R Sbjct: 64 GRWRRLK----KINPNLIIGVGGCVASQEGSNIRERANYVDIIFGPQTLHRLPEMINHVR 119 Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + V+D + +KF+ + + +G TAF++I EGCDK+C++CVVPYTRGIE+ Sbjct: 120 ITRSPVIDISFPEIEKFDCMP-----KPQAKGPTAFVSIIEGCDKYCSYCVVPYTRGIEV 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E L D V EI LLGQNVNA+RG G CTF++LL ++ I G+ R+ Sbjct: 175 SRPCEDILLEINNLADQNVREIHLLGQNVNAYRGTRYGGGTCTFAELLRLVAAINGIDRI 234 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP + +D LI + D L+ ++HLPVQSGSDRIL M R HT EY+ II ++ Sbjct: 235 RFTTSHPIEFTDDLIDVYRDTPELVSFVHLPVQSGSDRILALMKRGHTVLEYKSIIRKLY 294 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +VRP I ISSDFIVGFPGET++DFR TM+L+ ++ + +FSF YSPR GTP +NM++ V Sbjct: 295 AVRPSIQISSDFIVGFPGETEEDFRQTMNLISEVNFDMSFSFIYSPRPGTPAANMVDIVS 354 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442 ++ K +RL LQ+ +R+Q + F+ A G + +L+E ++ L GR+ + V Sbjct: 355 QDEKKQRLYILQECIRKQAMKFSQAMKGTVQCILVEGTSRKNIMHLSGRTENNRVVNFIG 414 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 N IG + V I DV ++L GEL+ Sbjct: 415 NNGMIGQFVNVEIIDVYSNSLRGELI 440 >gi|330963484|gb|EGH63744.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 442 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + ++++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L ++GV E+TLLGQNVN +RG DG +DL+ +++ + G+ R Sbjct: 174 VSRPFDDVLTEVTHLAEHGVREVTLLGQNVNGYRGTTYDGRVADLADLIRAVAVVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH D+ L+ +LHLPVQSGSDRIL +M R HT EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHADVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I+ISSDFIVGFPGET+ DF TM L++ G+ +FSF YSPR GTP +++ + Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDAGFDFSFSFIYSPRPGTPAADLKDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG I +L+ + K+ G+L GR+ + V Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I D + +L G L+ Sbjct: 414 CDNPRLIGQFADVHIDDAQPHSLRGSLL 441 >gi|238786071|ref|ZP_04630029.1| hypothetical protein yberc0001_25290 [Yersinia bercovieri ATCC 43970] gi|238713010|gb|EEQ05064.1| hypothetical protein yberc0001_25290 [Yersinia bercovieri ATCC 43970] Length = 486 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/449 (43%), Positives = 285/449 (63%), Gaps = 12/449 (2%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKV 80 ++ ++ +K++GCQMN YDS +M D+ S GY + ++ADL++LNTC IREKA EKV Sbjct: 12 LMTKKLHIKTWGCQMNEYDSSKMADLLASTHGYLLTETPEEADLLLLNTCSIREKAQEKV 71 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 +S LG + LK ++ +L++ V GCVA EGE + +R+P V+++ GPQT +RLPE++ Sbjct: 72 FSLLGHWKLLK----EKNPELIIGVGGCVASQEGEHLRQRAPCVDIIFGPQTLHRLPEMI 127 Query: 141 ERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTR Sbjct: 128 NHVQGSHSSVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTR 182 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E+SR ++ E +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G Sbjct: 183 GEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDG 242 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II Sbjct: 243 IDRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAII 302 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R RP I ISSDFI+GFPGET DF TM LV I + ++SF YS R GTP +++ Sbjct: 303 RKLRQARPGIQISSDFIIGFPGETQQDFEQTMKLVADIRFDTSYSFIYSSRPGTPAADLP 362 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438 + V E K +RL LQ+++ +Q + + +G + +L+E ++ +L GR+ + V Sbjct: 363 DDVSEEEKKQRLHILQQRITQQAMEISREMIGTVQRILVEGPSRKNAMELAGRTENNRVV 422 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467 IG + V I DV S+L G L Sbjct: 423 NFEGTPSMIGQFVDVEIIDVYASSLRGIL 451 >gi|269213889|ref|ZP_06158241.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria cinerea ATCC 14685] gi|269145278|gb|EEZ71696.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria cinerea ATCC 14685] Length = 518 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/448 (43%), Positives = 285/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V DDAD+I+ NTC +REKA EKV+S Sbjct: 78 KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFS 137 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ DL++ VAGCVA EGE I++R+P V+VV GPQT +RLP+L+ + Sbjct: 138 DLGRVRPLK----EKNPDLIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLPKLIVD 193 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G +D + +KF+ L R G +AF++I EGC K+C++CVVPYTRG Sbjct: 194 KETTGLSQIDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSYCVVPYTRGE 248 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ +GE C F+ LL + EI G+ Sbjct: 249 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 308 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 309 RLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 368 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 369 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 428 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N VG + L+E K+ +L R+ + V Sbjct: 429 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 488 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G++V Sbjct: 489 TGTPDMINQMIDLEITEAYTFSLRGKVV 516 >gi|311108329|ref|YP_003981182.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Achromobacter xylosoxidans A8] gi|310763018|gb|ADP18467.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Achromobacter xylosoxidans A8] Length = 477 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 193/444 (43%), Positives = 292/444 (65%), Gaps = 13/444 (2%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ +++++GCQMN YDS +M D+ QG E ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 28 PRKLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEDADVILFNTCSVREKAQEKVFS 87 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR+++LK K +L++ V GCVA EGE I++R+P V+VV GPQT +RLP+L++R Sbjct: 88 DLGRVQHLK----KTNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKR 143 Query: 143 AR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G+ VD + +KF+ + R G TAF++I EGC K+C+FCVVPYTRG Sbjct: 144 RRDEGRSQVDISFPEIEKFDNMPP-----PRVDGATAFVSIMEGCSKYCSFCVVPYTRGE 198 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGL 260 E+SR V+ E L D GV E+TLLGQNVNA+RG+ D ++ F+ LL + EI G+ Sbjct: 199 EVSRPFEDVLVEVADLADQGVKEVTLLGQNVNAYRGRMTDSDEIADFAMLLEYVHEIPGI 258 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++M+ ++ A+ L L+ +LHLPVQ+GSDR+L M R +T E++ ++ Sbjct: 259 ERIRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAGMKRGYTTLEFKSVVR 318 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R+ RPD+ +SSDFIVGFPGET++DF TM L++ +G+ +FSF YS R GTP +++ + Sbjct: 319 RLRAARPDLTLSSDFIVGFPGETEEDFEKTMKLIEDVGFDTSFSFVYSRRPGTPAADLQD 378 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439 ++VK RL LQ + EQ + +G +L+E ++ +L+GR+ + V Sbjct: 379 DTPQDVKLRRLQRLQALINEQAATIARNMIGTRQRLLVEGPSRRDPNELMGRTENNRIVN 438 Query: 440 LNSKNHNIGDIIKVRITDVKISTL 463 + IG ++ V IT+ ++L Sbjct: 439 FAAPARLIGQMVDVIITEAHTNSL 462 >gi|302877837|ref|YP_003846401.1| RNA modification enzyme, MiaB family [Gallionella capsiferriformans ES-2] gi|302580626|gb|ADL54637.1| RNA modification enzyme, MiaB family [Gallionella capsiferriformans ES-2] Length = 443 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/447 (44%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMED-MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K+YGCQMN YDS +M D M G E+ + +++AD+I+ NTC IREKA EKV+S Sbjct: 2 KKLYIKTYGCQMNEYDSDKMADVMRACDGMEQTDKIEEADVILFNTCSIREKAEEKVFSD 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + +L++ V GCVA EG+ I++R+P V+VV GPQT +RLPEL++ Sbjct: 62 LGRVRPLKLA----NPNLVIGVGGCVASQEGDVIIKRAPYVDVVFGPQTLHRLPELIKAR 117 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L +AF++I EGC K+CTFCVVPYTRG E Sbjct: 118 RDSGRAQVDISFPEIEKFDHLPT-----PVTTSASAFVSIMEGCSKYCTFCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR LS V+ + +L GV E+TL+GQNVNA+ G D + F+ L+ +++ + + R Sbjct: 173 VSRPLSDVMKDIEELTAQGVKEVTLIGQNVNAYAGLTEDDDTVDFAYLIQAIAALPEIAR 232 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RY+TSHPRDMS LI + L+ +LHLPVQSGSDR+L +M R HT EY+ +I R+ Sbjct: 233 IRYSTSHPRDMSQRLIDVYATTPKLVSHLHLPVQSGSDRVLAAMKRGHTVLEYKSVIRRV 292 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R++RPD+ ++SDFIVGFPGET+ DF AT+ L++ IG+ +FS+ YSPR GTP + M + Sbjct: 293 RALRPDLCVTSDFIVGFPGETEADFEATLKLIEDIGFDNSFSYLYSPRPGTPAAEMHDDT 352 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441 VK+ RL LQ KL + A +G + VL+E K+ ++ GR+ + + Sbjct: 353 PLEVKSARLKRLQDKLSSLEDGVGQAMLGSVQRVLVEGISKKDLLEMAGRTDNNRVINFR 412 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V++T+V TL GEL Sbjct: 413 GSPGMIGRFVDVKVTEVVRHTLRGELA 439 >gi|213966835|ref|ZP_03394986.1| tRNA-i(6)A37 modification enzyme MiaB [Pseudomonas syringae pv. tomato T1] gi|301381966|ref|ZP_07230384.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. tomato Max13] gi|302058774|ref|ZP_07250315.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. tomato K40] gi|302135150|ref|ZP_07261140.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928685|gb|EEB62229.1| tRNA-i(6)A37 modification enzyme MiaB [Pseudomonas syringae pv. tomato T1] Length = 442 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + ++++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L ++GV E+TLLGQNVN +RG DG +DL+ +++ + G+ R Sbjct: 174 VSRPFDDVLTEVTHLAEHGVREVTLLGQNVNGYRGTTHDGRVADLADLIRAVAVVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH D+ L+ +LHLPVQSGSDRIL +M R HT EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHADVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I+ISSDFIVGFPGET+ DF TM L++ G+ +FSF YSPR GTP +++ + Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDAGFDFSFSFIYSPRPGTPAADLKDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG I +L+ + K+ G+L GR+ + V Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I D + +L G L+ Sbjct: 414 CNNPRLIGQFADVHIDDAQPHSLRGSLL 441 >gi|33600343|ref|NP_887903.1| hypothetical protein BB1357 [Bordetella bronchiseptica RB50] gi|81431747|sp|Q7WMN3|MIAB_BORBR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|33567942|emb|CAE31855.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 475 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/447 (43%), Positives = 292/447 (65%), Gaps = 13/447 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++++GCQMN YDS +M D+ + QG E ++ +DAD+I+ NTC +REKA EKV+S L Sbjct: 28 KLYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTCSVREKAQEKVFSDL 87 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+++LK K+ +L++ V GCVA EGE I++R+P V+VV GPQT +RLP+L++R R Sbjct: 88 GRVQHLK----KQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKRRR 143 Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G VD + +KF+ L R G TAF++I EGC K+C+FCVVPYTRG E+ Sbjct: 144 AQGVSQVDISFPEIEKFDALPP-----PRVDGATAFVSIMEGCSKYCSFCVVPYTRGEEV 198 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVR 262 SR V+ E L D GV E+TLLGQNVNA+RG G GE F+ LL + EI G+ R Sbjct: 199 SRPFDDVLLEVADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLEYVHEIPGIER 258 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP++M+ ++ A+ L L+ +LHLPVQ+GSDR+L +M R +TA E++ ++ R+ Sbjct: 259 IRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRRL 318 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RP + +SSDFIVGFPGET++DF+ TM L++ +G+ +FSF YS R GTP +++ + Sbjct: 319 RAARPSLTLSSDFIVGFPGETEEDFQKTMKLIEDVGFDTSFSFVYSRRPGTPAADLHDDT 378 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 ++VK RL LQ + +Q + +G VL+E ++ +L+GR+ + V Sbjct: 379 PQDVKLRRLQQLQALINQQAAAIAQGMIGTRQRVLVEGPSRRDPNELMGRTENNRIVNFP 438 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ V +T ++L G + Sbjct: 439 GVPRLIGHMVDVVVTHAHTNSLRGRVA 465 >gi|557263|emb|CAA57577.1| hypothetical protein [Pseudomonas aeruginosa PAO1] Length = 446 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 202/448 (45%), Positives = 281/448 (62%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F++++GCQMN YDS RM D+ Q E + +AD+I+LNTC IREK EKV S Sbjct: 3 KKLFIETHGCQMNEYDSSRMADLLGEHQALEVTENAAEADVILLNTCSIREKVQEKVCSK 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG R LK ++ DL++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGMWRELK----QQNPDLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R ++ VD + +KF+RL R G TAF+++ EGC K+C+FCVVPYTRG E Sbjct: 119 RSTRKPQVDVSFPEIEKFDRLP-----EPRVDGPTAFVSVMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +RG DG F++LL ++ + G+ R Sbjct: 174 VSRPFDDVIAEVIHLAENGVREVTLLGQNVNGFRGLTHDGRLADFAELLRVVAAVDGIER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH ++ L+ ++HLPVQSGSDR+L +M R HT EY+ I ++ Sbjct: 234 IRYTTSHPLEFSDALIQAHAEVPELVKFIHLPVQSGSDRVLAAMKRNHTVLEYKSRIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++ PDI ISSDFIVGFPGET+ DF TM LV+ +G+ +FSF YS R GTP +++ + + Sbjct: 294 KAAVPDICISSDFIVGFPGETEKDFEQTMKLVEDVGFDFSFSFIYSARPGTPAADLADDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441 E VK +RL LQ ++ +Q + VG +L+ KE G L GR+ + V Sbjct: 354 PEEVKKQRLQILQSRIHQQGYEISRRMVGSTQRILVTDFSKEDPGMLQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG +V I D +L G L+ Sbjct: 414 CDNPRLIGQFAQVHIDDALPHSLRGTLI 441 >gi|56476163|ref|YP_157752.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Aromatoleum aromaticum EbN1] gi|81358300|sp|Q5P760|MIAB_AZOSE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|56312206|emb|CAI06851.1| 2-methylthioadenine synthetase [Aromatoleum aromaticum EbN1] Length = 445 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 194/450 (43%), Positives = 293/450 (65%), Gaps = 14/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS +M D+ S+ + ++ ++AD+I+ NTC +REKA E+V+ Sbjct: 2 KKLYIRTFGCQMNEYDSDKMADVLGASEELVKTDNPEEADVILFNTCSVREKAQERVFHD 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR+++LK S +L++ V GCVA EG+ I+ R+P V+VV GPQT +RLP+L+ ER Sbjct: 62 LGRVKHLKQS----NPNLIIGVGGCVASQEGDAIVARAPYVDVVFGPQTLHRLPQLIAER 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ VD + +KF+ + R G +AF++I EGC K+CTFCVVPYTRG E Sbjct: 118 RHSGRSQVDISFPEIEKFDNMPPA-----RVEGASAFVSIMEGCSKYCTFCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL--DGEKCTFSDLLYSLSEIKGL 260 +SR L V+ E L GV E+TLLGQNVNAWRG+ GE+ F+ LL ++EI G+ Sbjct: 173 VSRPLDDVLAEVAGLAGQGVREVTLLGQNVNAWRGEITRDGGEQGDFAFLLECVAEIPGI 232 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR+TTSHPR+M+ + A+ + L+ +LHLPVQSGSDRIL +M R ++ E++ ++ Sbjct: 233 ERLRFTTSHPREMTQRVFDAYAKIPKLVSHLHLPVQSGSDRILAAMKRGYSVLEFKSVVR 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R+ RPD+++SSDFIVGFPGET++DF TM L+D++G+ +FSF YSPR GTP S++ + Sbjct: 293 KLRAARPDLSLSSDFIVGFPGETEEDFEKTMKLIDEVGFDASFSFVYSPRPGTPASDLAD 352 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439 V + K L LQK++ +Q + + A VG++ L+E K+ +L R+ + V Sbjct: 353 PVPQETKLRWLARLQKRIDQQAQAISQAMVGRVERALVEGLSRKDATELAARTGNNRVVN 412 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 IG + + IT +L GE+V Sbjct: 413 FVGNPRLIGQFVDLTITAALPHSLRGEIVT 442 >gi|85058789|ref|YP_454491.1| putative tRNA-thiotransferase [Sodalis glossinidius str. 'morsitans'] gi|123519811|sp|Q2NUT9|MIAB_SODGM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|84779309|dbj|BAE74086.1| putative tRNA-thiotransferase [Sodalis glossinidius str. 'morsitans'] Length = 474 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 285/448 (63%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDSTHGYQLTDNPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR LK +R +L++ V GCVA EG I R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWHMLKEAR----PELIIGVGGCVASQEGAHIRERANYVDIIFGPQTLHRLPEMINHV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G R VVD + +KF+RL R G TAF++I EGC+K+C+FCVVPYTRG Sbjct: 119 N-GTRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L D GV E+ LLGQNVNA+RG DG CTF++LL ++ I G+ Sbjct: 173 EVSRPCDDILFEIAQLADQGVREVNLLGQNVNAYRGASYDGGICTFAELLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RY TSHP + +D +I + D L+ ++HLPVQSGSDRIL M R HTA EY+ II R Sbjct: 233 RIRYITSHPIEFTDDIIDVYRDTPELVSFVHLPVQSGSDRILTMMKRAHTALEYKSIIRR 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPDI ISSDFI+GFPGET DF TM L+ + + +FSF YS R GTP ++M++ Sbjct: 293 LRKARPDIQISSDFIIGFPGETQQDFEQTMQLIADVNFDMSFSFIYSARPGTPAADMVDN 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q + ++ G++ +L+E ++ +L GR+ + V Sbjct: 353 VSEEEKKQRLHILQERITQQAMQYSRRMKGKVQRILVEGTSRKNVMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G L+ Sbjct: 413 EGAPSMIGKFVDVEIVDVYPNSLRGVLL 440 >gi|119897069|ref|YP_932282.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Azoarcus sp. BH72] gi|229890447|sp|A1K3J0|MIAB_AZOSB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|119669482|emb|CAL93395.1| Conserved Hypothetical protein [Azoarcus sp. BH72] Length = 449 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/454 (43%), Positives = 299/454 (65%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS +M D+ + +G + ++ ++AD+I+ NTC +REKA EKV+ Sbjct: 2 KKLYIRTFGCQMNEYDSEKMADVLGAGEGIAKTDNPEEADVILFNTCSVREKAQEKVFHD 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+++LK + DL++ V GCVA EG+ I+ R+P V+VV GPQT +RLP L+ R Sbjct: 62 LGRVKHLKQLK----PDLIIGVGGCVASQEGDAIVARAPYVDVVFGPQTLHRLPALIAAR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G+ VD + +KF+ + R G +AF++I EGC K+CTFCVVPYTRG E Sbjct: 118 KQSGRSQVDISFPEIEKFDAMPPA-----RVEGASAFVSIMEGCSKYCTFCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL--DGEKCTFSDLLYSLSEIKGL 260 ISR L V+ E L + GV E+TLLGQNVNAWRG+ + GE+ F+ LL ++EI G+ Sbjct: 173 ISRPLEDVLAEIAGLAEQGVKEVTLLGQNVNAWRGEIVRDAGEEGDFAFLLECVAEIPGI 232 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHPR+M+ L A+ + L+ LHLPVQSGSDRIL +M R ++ E++ I+ Sbjct: 233 ERIRYTTSHPREMTQRLFDAYVKIPKLVSQLHLPVQSGSDRILAAMKRGYSVLEFKSIVR 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R+ RPD+++SSDFIVGFPGET++DF TM L+D++G+ +FSF YS R GTP +++ + Sbjct: 293 KLRAARPDLSLSSDFIVGFPGETEEDFEKTMKLIDEVGFDGSFSFVYSARPGTPAADLED 352 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439 V + K L LQK++ EQ + + + VG +L+E ++ +L+GR+ + V Sbjct: 353 PVPQETKLAWLARLQKRIDEQAQAVSQSMVGSAQRILVEGVSRKSAEELMGRTDNNRVVN 412 Query: 440 LNSKNHN----IGDIIKVRITDVKISTLYGELVV 469 + + + +G I+VRIT +L GE++ Sbjct: 413 FPAPSPHRDRLVGQFIEVRITSALPHSLRGEILT 446 >gi|229890677|sp|A6T6B5|MIAB_KLEP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 474 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/448 (43%), Positives = 290/448 (64%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EG+ I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GNRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 173 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LREARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G + +L+E ++ +L GR+ + V Sbjct: 353 VPEADKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKNIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +G + V I DV ++L G++V Sbjct: 413 EGTPDLVGKFVDVEIVDVYTNSLRGKIV 440 >gi|330976853|gb|EGH76884.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 442 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 282/448 (62%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIREPAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + ++++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RVTRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +RG DG +DL+ ++ + G+ R Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH ++ L+ +LHLPVQSGSDRIL +M R HT EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I+ISSDFIVGFPGET+ DF TM L++ +G+ +FSF YSPR GTP +++ + Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG I +L+ + K+ G+L GR+ + V Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I D + +L G L+ Sbjct: 414 CDNPKLIGQFADVHIDDAQPHSLRGSLL 441 >gi|238893721|ref|YP_002918455.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Klebsiella pneumoniae NTUH-K2044] gi|238546037|dbj|BAH62388.1| putative tRNA-thiotransferase and tRNA-methylthiotransferase bifunctional enzyme [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 536 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/448 (43%), Positives = 290/448 (64%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ ++AD+++LNTC IREKA EKV+ Sbjct: 65 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 124 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EG+ I +R+ V+++ GPQT +RLPE++ Sbjct: 125 LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSV 180 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 181 R-GNRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 234 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 235 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 295 RIRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 355 LREARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G + +L+E ++ +L GR+ + V Sbjct: 415 VPEADKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKNIMELSGRTENNRVVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +G + V I DV ++L G++V Sbjct: 475 EGTPDLVGKFVDVEIVDVYTNSLRGKIV 502 >gi|28871919|ref|NP_794538.1| tRNA-i(6)A37 modification enzyme MiaB [Pseudomonas syringae pv. tomato str. DC3000] gi|81729456|sp|Q87VY1|MIAB_PSESM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|28855172|gb|AAO58233.1| tRNA-i(6)A37 modification enzyme MiaB [Pseudomonas syringae pv. tomato str. DC3000] gi|330873559|gb|EGH07708.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 442 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + ++++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L ++GV E+TLLGQNVN +RG DG +DL+ +++ + G+ R Sbjct: 174 VSRPFDDVLTEVTHLAEHGVREVTLLGQNVNGYRGTTHDGRVADLADLIRAVAVVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH D+ L+ +LHLPVQSGSDRIL +M R HT EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHADVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I+ISSDFIVGFPGET+ DF TM L++ G+ +FSF YSPR GTP +++ + Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDAGFDFSFSFIYSPRPGTPAADLKDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG I +L+ + K+ G+L GR+ + V Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I D + +L G L+ Sbjct: 414 CDNPRLIGQFADVHIDDAQPHSLRGSLL 441 >gi|156934828|ref|YP_001438744.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cronobacter sakazakii ATCC BAA-894] gi|229890546|sp|A7MQS5|MIAB_ENTS8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|156533082|gb|ABU77908.1| hypothetical protein ESA_02675 [Cronobacter sakazakii ATCC BAA-894] Length = 474 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 193/448 (43%), Positives = 292/448 (65%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + G+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLETTHGFTLTDVAEEADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ D+++ V GCVA EG+ I R+ V+++ GPQT +RLPE++ + Sbjct: 63 LGRWKTLK----EKNPDVIIGVGGCVASQEGDHIRDRARYVDIIFGPQTLHRLPEMINQV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 K-GTRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR +V E +L GV E+ LLGQNVNAWRG+ DG TF+DLL ++ I G+ Sbjct: 173 EVSRPSDDIVLEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNMMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET DF TM L+ ++ + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETQQDFEQTMKLIAEVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +G + V IT+V ++L G+++ Sbjct: 413 EGSPDMVGKFVDVEITEVFPNSLRGKVI 440 >gi|33595815|ref|NP_883458.1| hypothetical protein BPP1141 [Bordetella parapertussis 12822] gi|81429531|sp|Q7WB66|MIAB_BORPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|33565894|emb|CAE36442.1| conserved hypothetical protein [Bordetella parapertussis] Length = 475 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/447 (43%), Positives = 292/447 (65%), Gaps = 13/447 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++++GCQMN YDS +M D+ + QG E ++ +DAD+I+ NTC +REKA EKV+S L Sbjct: 28 KLYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTCSVREKAQEKVFSDL 87 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+++LK K+ +L++ V GCVA EGE I++R+P V+VV GPQT +RLP+L++R R Sbjct: 88 GRVQHLK----KQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKRRR 143 Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G VD + +KF+ L R G TAF++I EGC K+C+FCVVPYTRG E+ Sbjct: 144 AQGVSQVDISFPEIEKFDALPP-----PRVDGATAFVSIMEGCSKYCSFCVVPYTRGEEV 198 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVR 262 SR V+ E L D GV E+TLLGQNVNA+RG G GE F+ LL + EI G+ R Sbjct: 199 SRPFDDVLLEIADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLEYVHEIPGIER 258 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP++M+ ++ A+ L L+ +LHLPVQ+GSDR+L +M R +TA E++ ++ R+ Sbjct: 259 IRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRRL 318 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RP + +SSDFIVGFPGET++DF+ TM L++ +G+ +FSF YS R GTP +++ + Sbjct: 319 RAARPSLTLSSDFIVGFPGETEEDFQKTMKLIEDVGFDTSFSFVYSRRPGTPAADLHDDT 378 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 ++VK RL LQ + +Q + +G VL+E ++ +L+GR+ + V Sbjct: 379 PQDVKLRRLQQLQALINQQAAAIAQGMIGTRQRVLVEGPSRRDPNELMGRTENNRIVNFP 438 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ V +T ++L G + Sbjct: 439 GVPRLIGHMVDVVVTHAHTNSLRGRVA 465 >gi|262041254|ref|ZP_06014465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330005959|ref|ZP_08305443.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Klebsiella sp. MS 92-3] gi|259041370|gb|EEW42430.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536031|gb|EGF62437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Klebsiella sp. MS 92-3] Length = 478 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/448 (43%), Positives = 290/448 (64%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ ++AD+++LNTC IREKA EKV+ Sbjct: 7 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQ 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EG+ I +R+ V+++ GPQT +RLPE++ Sbjct: 67 LGRWKLLK----EKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSV 122 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 123 R-GNRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 176 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 177 EVSRPCDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGID 236 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 237 RIRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 296 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPDI ISSDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 297 LREARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 356 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G + +L+E ++ +L GR+ + V Sbjct: 357 VPEADKKQRLYILQERINQQAMAWSRRMLGTVQRILVEGTSRKNIMELSGRTENNRVVNF 416 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +G + V I DV ++L G++V Sbjct: 417 EGTPDLVGKFVDVEIVDVYTNSLRGKIV 444 >gi|84624263|ref|YP_451635.1| hypothetical protein XOO_2606 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|123752741|sp|Q2P266|MIAB_XANOM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|84368203|dbj|BAE69361.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 484 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 204/463 (44%), Positives = 296/463 (63%), Gaps = 19/463 (4%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHI 72 V++ +V + ++K++GCQMN YDS +M D+ S+G E ++ ++AD++++NTC I Sbjct: 25 VARPSAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSI 84 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 REKA EKV+S LGR + LK G +++ V GCVA EGE I++R+P V++V GPQT Sbjct: 85 REKAQEKVFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQT 140 Query: 133 YYRLPELLERAR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 +RLPEL+ RAR GK VD + +KF+RL R G +AF++I EGC K+C Sbjct: 141 LHRLPELI-RARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYC 194 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FS 248 +FCVVPYTRG E+SR V+ E +L GV EI LLGQNVNA+RG ++ Sbjct: 195 SFCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYA 254 Query: 249 DL---LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 DL + ++++I+G+ R+R+TTSHP + SD L+ A+ D+ L YLHLPVQ+GSDRIL + Sbjct: 255 DLGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSA 314 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R +TA E++ I ++R+VRPDI+ISSDFIVGFPGET+ DF TM L++ +G+ Q+FSF Sbjct: 315 MKRGYTALEFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSF 374 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KE 424 YS R GTP S++ + E VK RL LQ + S + + VG + VL+E ++ Sbjct: 375 VYSRRPGTPASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRD 434 Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 +L G+S ++ V IG + V IT+ ++L G + Sbjct: 435 PNELTGKSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477 >gi|46203304|ref|ZP_00208896.1| COG0621: 2-methylthioadenine synthetase [Magnetospirillum magnetotacticum MS-1] Length = 322 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 181/320 (56%), Positives = 235/320 (73%), Gaps = 5/320 (1%) Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 +VDT++ VEDKF+ L R RGVT FLT+QEGCDKFC FCVVPYTRG E+SRS++ Sbjct: 1 MVDTEFPVEDKFDHLPA-----RRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVA 55 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 VV+EAR+L++ GV EITL+GQNVNA+ G+G DG T L+ +LS + GL RLRYTTS Sbjct: 56 AVVEEARRLVEGGVREITLIGQNVNAYHGEGPDGAPSTLGRLMDALSAVPGLARLRYTTS 115 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 HP D +D LI+AH ++MPYLHLPVQSG+DRIL++MNRRHT +YR++I RIR RPD Sbjct: 116 HPNDFADDLIRAHATNPLVMPYLHLPVQSGADRILQAMNRRHTGDDYRRLIARIREARPD 175 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 IA+SSDFIVGFPGETD DF TM LV + G+A AFSFKYSPR GTP + + V E VK Sbjct: 176 IALSSDFIVGFPGETDADFADTMRLVSETGFAAAFSFKYSPRAGTPAAEREDAVPEAVKT 235 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 ERL LQ L Q+ +FN+A VG + E+L+EK G+ G++ G++P LQ+V ++ IG Sbjct: 236 ERLAALQALLDAQRHAFNEAAVGTVTEILVEKTGRHPGQVAGKTPHLQAVQFDASPSTIG 295 Query: 449 DIIKVRITDVKISTLYGELV 468 ++ VRI ++L+GE++ Sbjct: 296 TLVPVRIVRSGSNSLFGEVL 315 >gi|330813325|ref|YP_004357564.1| tRNA-i(6)A37 methylthiotransferase [Candidatus Pelagibacter sp. IMCC9063] gi|327486420|gb|AEA80825.1| tRNA-i(6)A37 methylthiotransferase [Candidatus Pelagibacter sp. IMCC9063] Length = 437 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/444 (44%), Positives = 282/444 (63%), Gaps = 13/444 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F +K++GCQMN YDS R+ D+ + Y+R+ ++ AD + NTCHIREKA +KVYS + Sbjct: 3 KNFVIKTFGCQMNEYDSNRIADLLSTIDYKRIEEVEKADCFIFNTCHIREKATQKVYSDI 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G+I+ + R K+ L V+ AGCVAQAE + +S V++VVGPQ Y++LPEL++ + Sbjct: 63 GKIKKI--LRGKQSKPLFVL-AGCVAQAESSMVFEKSDFVDIVVGPQAYHKLPELIKNYQ 119 Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K + +T+ V DKF+ L + N V++F+TIQEGCDKFC FCVVPYTRG E Sbjct: 120 KNKTKSFNTNLDVSDKFDSL---ENYKNISSKVSSFITIQEGCDKFCKFCVVPYTRGPEF 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR Q+ +E + L+D G EI LLGQNV+ ++ K ++ S L+ ++ IK L R+ Sbjct: 177 SRCPDQIYNEVQGLVDAGTREIILLGQNVSGYKNKDIN-----LSRLIDKVASIKKLERI 231 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D + LI A D LMP LHLPVQSGS++IL+SMNR+HT Y ++ID+ R Sbjct: 232 RFTTSHPNDFDEDLINAFKYQDKLMPQLHLPVQSGSNKILESMNRKHTREFYLKLIDKFR 291 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++ DI SSDFIVG+PGETD DF T+DLVDK+ ++ ++SF YS R GTP + +Q+ Sbjct: 292 DIKKDIEFSSDFIVGYPGETDKDFEDTLDLVDKVKFSNSYSFVYSQRPGTPAVD-FDQIP 350 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + A RL LQ KL + Q FND+ V +VL+E K+ + GR+ ++Q V + Sbjct: 351 KEESATRLEVLQNKLFDLQRKFNDSKVNSKTKVLVENITKKGNQFFGRNEYMQPVFIEGN 410 Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467 G I + + L+G + Sbjct: 411 KCTPGQIEIIEVKSSNRHNLWGTI 434 >gi|312963219|ref|ZP_07777703.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas fluorescens WH6] gi|311282485|gb|EFQ61082.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas fluorescens WH6] Length = 442 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 285/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + D+++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPDMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RATKLPQVDVSFPEIEKFDHLP-----EPRIDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +RG+ DG ++L+ ++ + G+ R Sbjct: 174 VSRPFDDVLSEIIHLAENGVREVTLLGQNVNGYRGQTHDGRLADLAELIRVVAAVDGIER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH ++ L+ +LHLPVQSGSDRIL +M R HTA EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILSAMKRNHTALEYKSKLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I ISSDFIVGFPGET+ DF+ TM L++ +G+ ++SF YS R GTP +++L++ Sbjct: 294 RAAVPGICISSDFIVGFPGETEKDFQQTMKLIEDVGFDFSYSFVYSQRPGTPAADLLDET 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG + +L+ + K+ G+L GR+ + V Sbjct: 354 PEALKKERLNALQHRLNQQGFEISRQMVGSVQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I + +L G L+ Sbjct: 414 CDNPTLIGQFADVHIDAAQPHSLRGSLI 441 >gi|254448584|ref|ZP_05062043.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium HTCC5015] gi|198261773|gb|EDY86059.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [gamma proteobacterium HTCC5015] Length = 446 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/436 (45%), Positives = 283/436 (64%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ + GYE S ++AD+I++NTC IREKA EKV+S LGR R +K Sbjct: 1 MNEYDSDKMLDVLHQADGYELTTSAEEADVILMNTCSIREKAQEKVFSQLGRYRQMK--- 57 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTD 153 ++ DL++ V GCVA EGE + R+P V++V GPQT +RLPE++ R K VVD Sbjct: 58 -EKNPDLVIGVGGCVASQEGEALRERAPFVDMVFGPQTLHRLPEMVSSVRIKKMPVVDIS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+ L R G +AF++I EGC K+CTFCVVPYTRG E+SR L V+ E Sbjct: 117 FPEIEKFDHLPA-----PRVEGPSAFVSIMEGCSKYCTFCVVPYTRGEEVSRPLDDVIAE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L GV EI LLGQNVNA+RG+ +GE C F+ LL+ ++ + G+ R+RYTTSHP + Sbjct: 172 IAQLAAAGVREINLLGQNVNAYRGETHEGEICDFATLLHYVAAVDGIDRIRYTTSHPVEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D +I A+ + L+ +LHLPVQSG+DRIL +M R H A EY+ I ++R RP +++SS Sbjct: 232 TDAIIDAYKTVPELVSHLHLPVQSGADRILAAMKRGHMALEYKSKIRKLRKARPGLSLSS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFI+GFPGE++ DF TM L+ +IG+ +FSF YS R GTP SN+ + V VK ERL Sbjct: 292 DFIIGFPGESETDFEQTMSLIREIGFDTSFSFIYSARPGTPASNLPDDVPMTVKKERLKI 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQK++ + +++ VG I VL+++ K+ ++ GR+ + V + IG + Sbjct: 352 LQKEIADNARQISESRVGSIQRVLVDRVSKKDSNEVSGRTECNRVVNFAGSPNLIGLFVD 411 Query: 453 VRITDVKISTLYGELV 468 VRIT+ ++L GE V Sbjct: 412 VRITEAYPNSLRGEFV 427 >gi|107023628|ref|YP_621955.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia cenocepacia AU 1054] gi|116690713|ref|YP_836336.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia cenocepacia HI2424] gi|170734056|ref|YP_001766003.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia cenocepacia MC0-3] gi|254247273|ref|ZP_04940594.1| hypothetical protein BCPG_02060 [Burkholderia cenocepacia PC184] gi|123244709|sp|Q1BTS3|MIAB_BURCA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890456|sp|B1JY57|MIAB_BURCC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890457|sp|A0KAB6|MIAB_BURCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|105893817|gb|ABF76982.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia cenocepacia AU 1054] gi|116648802|gb|ABK09443.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia cenocepacia HI2424] gi|124872049|gb|EAY63765.1| hypothetical protein BCPG_02060 [Burkholderia cenocepacia PC184] gi|169817298|gb|ACA91881.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia cenocepacia MC0-3] Length = 457 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/454 (44%), Positives = 292/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + K G LL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ Sbjct: 63 LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK--CTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSTDIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGET+DDF M LV ++GY +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEDDFDKMMALVHEMGYDTSFSFIYSPRPGTPAANLAD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 VK +RL LQ + E + + VG++ +L+E K+ +L GR+ + V Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L S IG +I V+I +L GELV+ Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 447 >gi|237730638|ref|ZP_04561119.1| MiaB protein [Citrobacter sp. 30_2] gi|226906177|gb|EEH92095.1| MiaB protein [Citrobacter sp. 30_2] Length = 490 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 193/449 (42%), Positives = 289/449 (64%), Gaps = 14/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 17 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 76 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K L++ V GCVA EG+ I +R+ V+++ GPQT +RLPE++ + Sbjct: 77 LGRWKLLKEKNPK----LIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINKV 132 Query: 144 RFGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R VVD + +KF+RL R G +AF++I EGC+K+CT+CVVPYTRG Sbjct: 133 RGSTTRSPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCNKYCTYCVVPYTRG 187 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ Sbjct: 188 EEVSRPADDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTIGSFADLLRLVAAIDGI 247 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP + +D +++ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II Sbjct: 248 DRIRFTTSHPIEFTDDIVEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 307 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R+ RPDI ISSDFIVGFPGET DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 308 KLRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVD 367 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439 V E K +RL LQ+++ +Q ++++ VG +L+E ++ +L GR+ + V Sbjct: 368 DVPEEEKKQRLYILQERINQQAMAWSRRMVGTTQRILVEGTSRKSIMELSGRTENNRVVN 427 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 +G + V ITDV ++L G++V Sbjct: 428 FEGNPDMVGKFVDVEITDVWTNSLRGKVV 456 >gi|187927511|ref|YP_001897998.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ralstonia pickettii 12J] gi|309779787|ref|ZP_07674542.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ralstonia sp. 5_7_47FAA] gi|229890622|sp|B2UFP3|MIAB_RALPJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|187724401|gb|ACD25566.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ralstonia pickettii 12J] gi|308921364|gb|EFP67006.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ralstonia sp. 5_7_47FAA] Length = 456 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 205/458 (44%), Positives = 289/458 (63%), Gaps = 26/458 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K+YGCQMN YDS +M D+ ++G ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIKTYGCQMNEYDSDKMSDVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSE 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR++ LK + DL+V V GCVA EG I+ R+P V+VV GPQT +RLP+L+ R Sbjct: 62 LGRVKALKALK----PDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPDLIAAR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +A+++I EGC K+C++CVVPYTRG E Sbjct: 118 RRTGRSQVDVSFPEIEKFDHLPPA-----RVDGASAYVSIMEGCSKYCSYCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L + GV E+TLLGQNVNA+ GK G E+ F+ LL ++EI G+ Sbjct: 173 VSRPFDDVLAEVAGLAEQGVREVTLLGQNVNAYIGKMGDTSERADFALLLEYVAEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP++ S LI+A+ L+ +LHLPVQ GSDRIL +M R +T EY+ I + Sbjct: 233 RIRYTTSHPKEFSSRLIEAYATNPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSSIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RP+I+I++DFIVGFPGETD DF TMDL+ +IGY +FSF YSPR GTP +N+ + Sbjct: 293 LRAIRPNISIATDFIVGFPGETDADFAKTMDLIHEIGYDTSFSFIYSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS-------- 432 + VK ERL LQ + E + VG + +L+E K+ +L GR+ Sbjct: 353 TPQAVKLERLKHLQATIEENVARISQGMVGSVQRILVEGPSRKDPTELHGRTENNRVVNF 412 Query: 433 --PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 P L V + IG ++ VRI +L GE+ Sbjct: 413 ALPDLPQV---RREQLIGQMLDVRIVHAFPHSLRGEVA 447 >gi|224827052|ref|ZP_03700149.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lutiella nitroferrum 2002] gi|224600718|gb|EEG06904.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lutiella nitroferrum 2002] Length = 444 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/450 (44%), Positives = 291/450 (64%), Gaps = 18/450 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ ++G + ++ ++AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVYIKTFGCQMNEYDSDKMVDVLGDAEGMVKTDNPEEADVILFNTCSVREKAQEKVFSD 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGRIR LK++R DL++ V GCVA EG+ I++R+P V+VV GPQT +RLPEL+ RA Sbjct: 62 LGRIRPLKDAR----PDLIIGVGGCVASQEGDTIVKRAPYVDVVFGPQTLHRLPELI-RA 116 Query: 144 R--FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + G VD + +KF+ + + VDGG AF++I EGC K+C+FCVVPYTR Sbjct: 117 KQDSGAAQVDISFPEIEKFDHIPPAKVDGG-------AAFVSIMEGCSKYCSFCVVPYTR 169 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E+SR V+ E L GV EITLLGQNVNA+RG DGE F+ LL + E+ G Sbjct: 170 GEEVSRPFDDVLTEIAGLAAQGVKEITLLGQNVNAYRGLMADGEIADFALLLEYVHEVPG 229 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+TTSHPR+ S +I + L L+ +LHLPVQSG DR+L +M R +TA EY+ II Sbjct: 230 VERIRFTTSHPREFSQRIIDCYAKLPKLVSHLHLPVQSGCDRVLMAMKRGYTALEYKSII 289 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R++RPD+ +SSDFIVGFPGET+DDF AT+ LV + + +F F YSPR GTP +N+ Sbjct: 290 RKLRAIRPDLCLSSDFIVGFPGETEDDFNATLKLVKDLEFDFSFVFIYSPRPGTPAANLP 349 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438 + K RL L + + + + N + VG + VL+E K+ L R+ + V Sbjct: 350 DDTPHEEKVRRLEALNEVIEAKGFAINQSMVGTVQRVLVEAVSKKDPNMLAARTMNNRVV 409 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +I+VRIT+ + +L GE+V Sbjct: 410 NFIGNPRLLNQMIEVRITEARPHSLAGEIV 439 >gi|254251467|ref|ZP_04944785.1| 2-methylthioadenine synthetase [Burkholderia dolosa AUO158] gi|124894076|gb|EAY67956.1| 2-methylthioadenine synthetase [Burkholderia dolosa AUO158] Length = 457 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/454 (44%), Positives = 292/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK ++ DLL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ Sbjct: 63 LGRVRELKEAK----PDLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G TAF++I EGC K+C++CVVPYTRG E Sbjct: 119 RTSGRAQVDITFPEIEKFDHLPPA-----RVEGPTAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGSSEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGETDDDF M LV + Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDLIVGFPGETDDDFDKMMALVHDMRYDTSFSFIYSPRPGTPAANLHD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 +VK +RL LQ + E + + VG++ +L+E K+ +L GR+ + V Sbjct: 354 DTPRDVKLKRLQHLQATIEENVARISRSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L S IG +I V+I +L GEL++ Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447 >gi|83746116|ref|ZP_00943171.1| COG0621, tRNA 2-methylthioadenosine synthase [Ralstonia solanacearum UW551] gi|207727985|ref|YP_002256379.1| hypothetical protein RSMK04402 [Ralstonia solanacearum MolK2] gi|207742384|ref|YP_002258776.1| hypothetical protein RSIPO_00571 [Ralstonia solanacearum IPO1609] gi|83727299|gb|EAP74422.1| COG0621, tRNA 2-methylthioadenosine synthase [Ralstonia solanacearum UW551] gi|206591228|emb|CAQ56840.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] gi|206593774|emb|CAQ60701.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 464 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/459 (44%), Positives = 288/459 (62%), Gaps = 24/459 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ ++G ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIKTFGCQMNEYDSDKMADVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSD 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR++ LK DL+V V GCVA EG I+ R+P V+VV GPQT +RLPEL++ R Sbjct: 62 LGRVKALK----ALNPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPELIDAR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 118 RRTGRPQVDVSFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-----GLDGEKCTFSDLLYSLSEI 257 +SR V+ E L + GV E+TLLGQNVNA+ GK E+ F+ LL ++EI Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYVGKMGSKANDSSERADFALLLEYVAEI 232 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 G+ R+RYTTSHP++ + LI+A+ L+ +LHLPVQ GSDRIL +M R +T EY+ Sbjct: 233 PGIERIRYTTSHPKEFTSRLIEAYATNRKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKS 292 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 II ++R++RPDI+I++DFIVGFPGETD DF TMDLV +IGY +FSF YSPR GTP +N Sbjct: 293 IIRKLRTIRPDISIATDFIVGFPGETDADFAKTMDLVHEIGYDNSFSFIYSPRPGTPAAN 352 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP--- 433 + + VK ERL LQ + ++ VG + +L+E K+ +L GR+ Sbjct: 353 LHDDTPHAVKLERLKHLQATIDANMARISEGMVGSVQRILVEGPSRKDPSELHGRTENNR 412 Query: 434 ----WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 L + ++ +G ++ VRI +L GE+ Sbjct: 413 VVNFALPDLPPARRDQLVGQMLDVRIVHAYPHSLRGEVA 451 >gi|146310845|ref|YP_001175919.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter sp. 638] gi|229890545|sp|A4W838|MIAB_ENT38 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|145317721|gb|ABP59868.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter sp. 638] Length = 474 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 287/448 (64%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLNATHGYELTELAEEADVLLLNTCSIREKAQEKVFHL 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K+ DL++ V GCVA EG+ I RSP V++V GPQT +RLPE++ Sbjct: 63 LGRWKLLK----KKNPDLIIGVGGCVASQEGKLIRTRSPYVDIVFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G +AF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDVSFPEIEKFDRLP-----EPRADGPSAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG TF++LL ++ I G+ Sbjct: 173 EVSRPCDDILFEVAQLAAQGVREVNLLGQNVNAWRGENYDGSIGTFAELLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I + D L+ +LHLPVQ GSDR+L M R HT EY+ II + Sbjct: 233 RVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQCGSDRVLNLMGRTHTVLEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPDI ISSDFIVGFPGET DDF TM L+ +I + +FSF +S R GTP ++M++ Sbjct: 293 LREARPDIQISSDFIVGFPGETTDDFERTMKLIGEINFDVSFSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q +++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQVTAWSRRMLGTTQRILVEGTSRKSVMQLSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + + I +V +++ G++V Sbjct: 413 EGTPDMIGKFVDIEILEVLTNSMRGKVV 440 >gi|289671358|ref|ZP_06492433.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 484 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/455 (44%), Positives = 290/455 (63%), Gaps = 17/455 (3%) Query: 21 CIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEK 79 +V + ++K++GCQMN YDS +M D+ S+G E ++ +DAD++++NTC IREKA EK Sbjct: 32 AVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEK 91 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 V+S LGR + LK G +++ V GCVA EGE I++R+P V++V GPQT +RLPEL Sbjct: 92 VFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPEL 147 Query: 140 LE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + R GK VD + +KF+RL R G +AF++I EGC K+C+FCVVPYT Sbjct: 148 IRARRESGKSQVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYCSFCVVPYT 202 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FSDL---LYS 253 RG E+SR V+ E +L GV EI LLGQNVNA+RG ++DL + + Sbjct: 203 RGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYADLGLLIRT 262 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 +++I G+ R+R+TTSHP + SD L+ A+ D+ L YLHLPVQ+GSDRIL +M R +TA Sbjct: 263 IAQIDGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTAL 322 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 E++ I ++R+VRPDI+ISSDFIVGFPGET+ DF TM L++ +G+ Q+FSF YS R GT Sbjct: 323 EFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPGT 382 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432 P S++ + E VK RL LQ + S + + VG + VL+E ++ +L G+S Sbjct: 383 PASDLQDDTPEAVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDPNELTGKS 442 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ V IG + V IT+ ++L G + Sbjct: 443 ENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477 >gi|78048194|ref|YP_364369.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123757453|sp|Q3BS94|MIAB_XANC5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|78036624|emb|CAJ24315.1| 2-methylthioadenine synthetase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 484 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/455 (44%), Positives = 291/455 (63%), Gaps = 17/455 (3%) Query: 21 CIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEK 79 +V + ++K++GCQMN YDS +M D+ S+G E ++ ++AD++++NTC IREKA EK Sbjct: 32 AVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSIREKAQEK 91 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 V+S LGR + LK G +++ V GCVA EGE I++R+P V++V GPQT +RLPEL Sbjct: 92 VFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPEL 147 Query: 140 LE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + R GK VD + +KF+RL R G +AF++I EGC K+C+FCVVPYT Sbjct: 148 IRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYT 202 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FSDL---LYS 253 RG E+SR V+ E +L GV EI LLGQNVNA+RG ++DL + + Sbjct: 203 RGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYADLGLLIRT 262 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 +++I+G+ R+R+TTSHP + SD L+ A+ D+ L YLHLPVQ+GSDRIL +M R +TA Sbjct: 263 IAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTAL 322 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 E++ I ++R+VRPDI+ISSDFIVGFPGET+ DF TM L++ +G+ Q+FSF YS R GT Sbjct: 323 EFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPGT 382 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432 P S++ + E VK RL LQ + S + + VG + VL+E ++ +L G+S Sbjct: 383 PASDLQDDTPEAVKQARLARLQAHINAHAASISQSMVGSVQRVLVEGPSRRDPNELTGKS 442 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ V IG + V IT+ ++L G + Sbjct: 443 ENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477 >gi|85713017|ref|ZP_01044055.1| 2-methylthioadenine synthetase [Idiomarina baltica OS145] gi|85693186|gb|EAQ31146.1| 2-methylthioadenine synthetase [Idiomarina baltica OS145] Length = 476 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 294/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ S GYE + ADLI+LNTC IREKA EKV+ Sbjct: 3 KKLYVKTWGCQMNEYDSTKMADLLNSTHGYELTEEAEQADLILLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR ++LK + DLL+ V GCVA EG+ I R+P V++V GPQT +RLPE++++ Sbjct: 63 LGRWKHLKQA----NPDLLIGVGGCVASQEGDAIRARAPFVDIVFGPQTLHRLPEMVKQV 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + ++D + +KF+RL + G +AF++I EGC K+C+FCVVPYTRG E Sbjct: 119 GSDHQPMIDISFPEIEKFDRLP-----DPKAEGASAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG+ DG C F++LL+ ++ I G+ R Sbjct: 174 VSRPVDDVIYEIAQLAEQGVREVNLLGQNVNAYRGEHFDGSVCRFAELLHLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + +D +I+A+ + L+ +LHLPVQSGSDR+L M R HTA EY+ I + Sbjct: 234 IRYTTSHPVEFTDDIIEAYTTIPELVSHLHLPVQSGSDRVLTMMKRGHTALEYKSKIRAL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + RPDIA+SSDFI+GFPGETD DF+ATMDL+ I + +FSF YS R GTP +++ + V Sbjct: 294 KKARPDIAMSSDFIIGFPGETDADFQATMDLIQAIDFDMSFSFIYSARPGTPAADIPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441 E K +RL LQ++L +Q ++ + +L+ K+ +L GR+ + V Sbjct: 354 TEATKKQRLQLLQQRLNQQSMAHARRMLDTEQRILVTGPSKKNPMELTGRTENNRVVNFV 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + H IG + V+IT+V ++L GEL+ Sbjct: 414 GQPHMIGKFVDVKITEVLPNSLRGELI 440 >gi|33592184|ref|NP_879828.1| hypothetical protein BP1041 [Bordetella pertussis Tohama I] gi|81578782|sp|Q7VZ86|MIAB_BORPE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|33571829|emb|CAE41341.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332381601|gb|AEE66448.1| hypothetical protein BPTD_1035 [Bordetella pertussis CS] Length = 447 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/446 (43%), Positives = 291/446 (65%), Gaps = 13/446 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +++++GCQMN YDS +M D+ + QG E ++ +DAD+I+ NTC +REKA EKV+S LG Sbjct: 1 MYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTCSVREKAQEKVFSDLG 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R+++LK K+ +L++ V GCVA EGE I++R+P V+VV GPQT +RLP+L++R R Sbjct: 61 RVQHLK----KQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKRRRA 116 Query: 146 -GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G VD + +KF+ L R G TAF++I EGC K+C+FCVVPYTRG E+S Sbjct: 117 QGVSQVDISFPEIEKFDALPP-----PRVDGATAFVSIMEGCSKYCSFCVVPYTRGEEVS 171 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRL 263 R V+ E L D GV E+TLLGQNVNA+RG G GE F+ LL + EI G+ R+ Sbjct: 172 RPFDDVLLEVADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLEYVHEIPGIERI 231 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHP++M+ ++ A+ L L+ +LHLPVQ+GSDR+L +M R +TA E++ ++ R+R Sbjct: 232 RYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRRLR 291 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + RP + +SSDFIVGFPGET++DF+ TM L++ +G+ +FSF YS R GTP +++ + Sbjct: 292 AARPSLTLSSDFIVGFPGETEEDFQKTMKLIEDVGFDTSFSFVYSRRPGTPAADLHDDTP 351 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442 ++VK RL LQ + +Q + +G VL+E ++ +L+GR+ + V Sbjct: 352 QDVKLRRLQQLQALINQQAAAIAQGMIGTRQRVLVEGPSRRDPNELMGRTENNRIVNFPG 411 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ V +T ++L G + Sbjct: 412 VPRLIGHMVDVVVTHAHTNSLRGRVA 437 >gi|293607161|ref|ZP_06689503.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Achromobacter piechaudii ATCC 43553] gi|292814495|gb|EFF73634.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Achromobacter piechaudii ATCC 43553] Length = 484 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/445 (43%), Positives = 290/445 (65%), Gaps = 15/445 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ +++++GCQMN YDS +M D+ QG E ++ ++AD+I+ NTC +REKA EKV+S Sbjct: 35 PRKLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEEADVILFNTCSVREKAQEKVFS 94 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR+++LK K +L++ V GCVA EG I++R+P V+VV GPQT +RLP+L+ R Sbjct: 95 DLGRVQHLK----KTNPNLVIGVGGCVASQEGAAIVKRAPYVDVVFGPQTLHRLPDLIAR 150 Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G+ VD + +KF+ + R G TAF++I EGC K+C+FCVVPYTRG Sbjct: 151 RRAEGRSQVDISFPEIEKFDNMPP-----PRVEGATAFVSIMEGCSKYCSFCVVPYTRGE 205 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKG 259 E+SR V+ E L D GV E+TLLGQNVNA+RGK G D E F+ LL + EI G Sbjct: 206 EVSRPFEDVLVEVADLADQGVKEVTLLGQNVNAYRGKMEGTD-EIADFAMLLEYVHEIPG 264 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+RYTTSHP++M+ ++ A+ L L+ +LHLPVQ+GSDR+L M R +T E++ ++ Sbjct: 265 IERIRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAGMKRGYTTLEFKSVV 324 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R+R+ RPD+ +SSDFIVGFPGET++DF TM L++ +G+ +FSF YS R GTP +++ Sbjct: 325 RRLRAARPDLTLSSDFIVGFPGETEEDFEKTMKLIEDVGFDTSFSFVYSRRPGTPAADLT 384 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438 + ++VK RL LQ + EQ + VG +L+E ++ +L+GR+ + V Sbjct: 385 DDTPQDVKLRRLQRLQALINEQAATIARNMVGTRQRLLVEGPSRRDPNELMGRTENNRIV 444 Query: 439 VLNSKNHNIGDIIKVRITDVKISTL 463 + IG ++ V IT+ ++L Sbjct: 445 NFAAPARLIGQMVDVIITEAHTNSL 469 >gi|325266776|ref|ZP_08133449.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Kingella denitrificans ATCC 33394] gi|324981778|gb|EGC17417.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Kingella denitrificans ATCC 33394] Length = 441 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 194/448 (43%), Positives = 286/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+VN D AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSEKMLAVLAEEHGGIEQVNEPDGADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-LE 141 LGR+++LK K+ ++++ VAGCVA EGE I+ R+P V+VV GPQT +RLP++ ++ Sbjct: 62 DLGRVKHLK----KDNPNVIIGVAGCVASQEGEAIIERAPYVDVVFGPQTLHRLPKMIMD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G +AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETTGLSQVDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ +GE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ SD +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFSDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N +G + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMLGTVQRCLVEGVSKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + I ++ + IT+ + +L G+L Sbjct: 413 HGTADLINQMVDLEITEARTFSLSGKLA 440 >gi|303250593|ref|ZP_07336790.1| bifunctional enzyme involved in thiolation andmethylation of tRNA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253077|ref|ZP_07339227.1| bifunctional enzyme involved in thiolation andmethylation of tRNA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648062|gb|EFL78268.1| bifunctional enzyme involved in thiolation andmethylation of tRNA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650581|gb|EFL80740.1| bifunctional enzyme involved in thiolation andmethylation of tRNA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 455 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/428 (45%), Positives = 282/428 (65%), Gaps = 12/428 (2%) Query: 44 MEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLL 102 M D+ S G E + ++AD+++LNTC IREKA EKV+S LGR +N K K+ DL+ Sbjct: 1 MADLLNSTHGLELTDKPEEADVLLLNTCSIREKAQEKVFSQLGRWKNWK----KDKPDLI 56 Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTDYSVEDKFE 161 + V GCVA EGE I R+P V++V GPQT +RLPE++ + R G R +VD + +KF+ Sbjct: 57 IGVGGCVASQEGEHIRDRAPFVDIVFGPQTLHRLPEMINKIRGGDRAIVDISFPEIEKFD 116 Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221 RL R G TAF++I EGC+K+C+FCVVPYTRG E+SR + V+ E +L + G Sbjct: 117 RLP-----EPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFEIAQLAEQG 171 Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281 V E+ LLGQNVNA+RG+ DG CTF++LL ++ I G+ R+RYTTSHP + +D +I+ + Sbjct: 172 VREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAIDGIDRVRYTTSHPIEFTDDIIEVY 231 Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341 D L+ +LHLP+QSG+DR+L M R HTA EY+ II ++R VRP+I ISSDFIVGFPG Sbjct: 232 RDTPELVSFLHLPIQSGADRVLTMMKRNHTALEYKAIIRKLREVRPNIQISSDFIVGFPG 291 Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401 ET +DF TM +++++ + +FSF YS R GTP +++ + + E K RL LQ+++ Q Sbjct: 292 ETAEDFEQTMKVIEQVNFDMSFSFIYSARPGTPAADLPDDISEEEKKARLARLQQRINHQ 351 Query: 402 QVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKI 460 + F+ A +G VL+E K+ +L GR+ + V IG + ++ITDV Sbjct: 352 AMQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFQGTPDMIGKFVDIKITDVYT 411 Query: 461 STLYGELV 468 ++L GE+V Sbjct: 412 NSLRGEVV 419 >gi|253687591|ref|YP_003016781.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754169|gb|ACT12245.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 474 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 286/448 (63%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLGSTHGYELTEIAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ +L++ V GCVA EG I R+ V+V+ GPQT +RLPE++ Sbjct: 63 LGRWKALKDL----NPNLIIGVGGCVASQEGAHIRERAHYVDVIFGPQTLHRLPEMINHV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R +VD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG Sbjct: 119 Q-GTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR V+ E +L GV E+ LLGQNVNA+RG+ DGE C+F++LL ++ I G+ Sbjct: 173 EVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETYDGEICSFAELLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I + D L+ +LHLPVQSGSDR+L M RRHTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 + + RP I ISSDFIVGFPGET DF TM L+ + + ++SF YS R GTP ++M++ Sbjct: 293 LHNARPGILISSDFIVGFPGETQADFEQTMKLIADVNFDMSYSFVYSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q + F+ +G + +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYLLQERITQQAMRFSRLMLGTVQRILVEGTSRKSVMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G +V Sbjct: 413 EGTPDMIGKFVDVEIVDVYTNSLRGIVV 440 >gi|261365367|ref|ZP_05978250.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria mucosa ATCC 25996] gi|298369521|ref|ZP_06980838.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria sp. oral taxon 014 str. F0314] gi|288566157|gb|EFC87717.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria mucosa ATCC 25996] gi|298282078|gb|EFI23566.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria sp. oral taxon 014 str. F0314] Length = 442 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V D+AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSEKMLAVLAEENGGIEQVTEADEADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ DL++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVRPLK----EKNPDLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ DGE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMEDGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N +G + L+E K+ +L R+ + V Sbjct: 353 TPHAEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G+ V Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKPV 440 >gi|253999825|ref|YP_003051888.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylovorus sp. SIP3-4] gi|313201799|ref|YP_004040457.1| tRNA-i(6)a37 thiotransferase enzyme miab [Methylovorus sp. MP688] gi|253986504|gb|ACT51361.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylovorus sp. SIP3-4] gi|312441115|gb|ADQ85221.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylovorus sp. MP688] Length = 443 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/447 (44%), Positives = 280/447 (62%), Gaps = 12/447 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P++ F+K++GCQMN YDS RM DM + G + ++ +DAD+I+LNTC +REKA EKV+ Sbjct: 3 TPKKVFIKTFGCQMNEYDSSRMADMLNAADGMQPTDNPEDADVILLNTCSVREKAQEKVF 62 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140 S LGR LK ++ +L++ V GCVA EG+ I+ R+P V+VV GPQT +RLPEL+ Sbjct: 63 SHLGRFIPLK----EKNPNLVIGVGGCVASQEGQHIVDRAPYVDVVFGPQTLHRLPELIA 118 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R G VD + +KF+ L R G AFL+I EGC+K+C+FCVVPYTRG Sbjct: 119 NRRSSGLSQVDISFPEIEKFDHLPP-----PRVEGAAAFLSIMEGCNKYCSFCVVPYTRG 173 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR ++ EA +L + GV EITLLGQNVNA+R DG + L+ ++EI + Sbjct: 174 EEFSRPFEDILVEAIQLAEQGVKEITLLGQNVNAYRSTSADGTAADLAMLIDYIAEIPQI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP +MS+ LI + L+ +LHLPVQ+GSDR+L M R +TA +Y+ II Sbjct: 234 ERIRFTTSHPNEMSEALIDCFARIPKLVSHLHLPVQAGSDRVLMGMKRNYTALQYKSIIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R RPDI I+SDFIVGFPGE++ DF AT+ L+ +G+ ++SF YS R GTP S + + Sbjct: 294 KLRRARPDICITSDFIVGFPGESEQDFAATLKLMQDVGFDFSYSFTYSARPGTPASYLPD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439 E K ERL LQ+ Q + +++ VG + VL+E K+ G+L GR+ + V Sbjct: 354 DTSEETKLERLSRLQELNEAQGKAVSESMVGSVQRVLVESLSKKDTGELAGRTDNNRIVN 413 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGE 466 I + V+IT TL GE Sbjct: 414 FPGDAKLINQFVHVKITQAMPHTLRGE 440 >gi|166711743|ref|ZP_02242950.1| hypothetical protein Xoryp_09860 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 484 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/462 (43%), Positives = 293/462 (63%), Gaps = 17/462 (3%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHI 72 V++ +V + ++K++GCQMN YDS +M D+ S+G E + ++AD++++NTC I Sbjct: 25 VARPCAPAVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDDPEEADVVLVNTCSI 84 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 REKA EKV+S LGR + LK G +++ V GCVA EGE I++R+P V++V GPQT Sbjct: 85 REKAQEKVFSQLGRWKALKAG----GRPVIIGVGGCVASQEGEAIVKRAPHVDLVFGPQT 140 Query: 133 YYRLPELLE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 +RLPEL+ R GK VD + +KF+RL R G +AF++I EGC K+C+ Sbjct: 141 LHRLPELIRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCS 195 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FSD 249 FCVVPYTRG E+SR V+ E +L GV EI LLGQNVNA+RG ++D Sbjct: 196 FCVVPYTRGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYAD 255 Query: 250 L---LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 L + ++++I+G+ R+R+TTSHP + SD L+ A+ D+ L YLHLPVQ+GSDRIL +M Sbjct: 256 LGLLIRTIAQIEGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAM 315 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R +TA E++ I ++R+VRPDI+ISSDFIVGFPGET+ DF TM L++ +G+ Q+FSF Sbjct: 316 KRGYTALEFKSRIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFV 375 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425 YS R GTP S++ + E VK RL LQ + S + + VG + VL+E ++ Sbjct: 376 YSRRPGTPASDLQDDTPETVKQARLARLQAHISAHAASISQSMVGSVQRVLVEGPSRRDP 435 Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 +L GRS ++ V IG + V IT+ ++L G + Sbjct: 436 NELTGRSENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477 >gi|227114980|ref|ZP_03828636.1| hypothetical protein PcarbP_18561 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 474 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 286/448 (63%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLGSTHGYELTEIAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ +L++ V GCVA EG I R+ V+V+ GPQT +RLPE++ Sbjct: 63 LGRWKTLKDL----NPNLIIGVGGCVASQEGAHIRERAHYVDVIFGPQTLHRLPEMINHV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R +VD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG Sbjct: 119 Q-GTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR V+ E +L GV E+ LLGQNVNA+RG+ DGE C+F++LL ++ I G+ Sbjct: 173 EVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETYDGEICSFAELLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I + D L+ +LHLPVQSGSDR+L M RRHTA EY+ II + Sbjct: 233 RVRFTTSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 + + RP I ISSDFIVGFPGET DF TM L+ + + ++SF YS R GTP ++M++ Sbjct: 293 LHNARPGILISSDFIVGFPGETQADFEQTMKLITDVNFDMSYSFVYSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q + F+ +G + +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYLLQERITQQAMRFSRLMLGTVQRILVEGTSRKSVMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G +V Sbjct: 413 EGTPDMIGKFVDVEIVDVYTNSLRGIVV 440 >gi|271499717|ref|YP_003332742.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya dadantii Ech586] gi|270343272|gb|ACZ76037.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dickeya dadantii Ech586] Length = 476 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 288/448 (64%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS ++ D+ S GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 5 KKLHIKTWGCQMNEYDSSKIADLLESTHGYQLTDVAEEADILLLNTCSIREKAQEKVFHQ 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ +L++ V GCVA EGE I R+ V+V+ GPQT +RLPE++ Sbjct: 65 LGRWKTLKDV----NPNLIIGVGGCVASQEGEHIRDRAHYVDVIFGPQTLHRLPEMINHV 120 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R +VD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG Sbjct: 121 Q-GTRSPIVDISFPEVEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGE 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR + V+ E +L GV E+ LLGQNVNA+RG D + C+F++LL ++ I G+ Sbjct: 175 EVSRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATHDDDICSFAELLRLVAAIDGID 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP + +D +I + D L+ +LHLPVQSGSDRIL M RRHTA EY+ II + Sbjct: 235 RIRFITSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRILTMMKRRHTALEYKAIIRK 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RP I ISSDFIVGFPGET +DF TM L+ + + +FSF YSPR GTP ++M++ Sbjct: 295 LRKARPAIQISSDFIVGFPGETQEDFEQTMQLIADVDFDMSFSFIYSPRPGTPAADMVDD 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q + ++ +G + +L+E ++ +L GR+ + V Sbjct: 355 VTEEEKKQRLYILQERINQQAMQYSRRMMGTVQRILVEGTSRKSVMELSGRTENNRVVNF 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G +V Sbjct: 415 EGTPDMIGKFVDVEIVDVYPNSLRGVVV 442 >gi|260597078|ref|YP_003209649.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cronobacter turicensis z3032] gi|260216255|emb|CBA29180.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Cronobacter turicensis z3032] Length = 474 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 193/448 (43%), Positives = 291/448 (64%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + G+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLETTHGFTLTDVAEEADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ D+++ V GCVA EG+ I R+ V+++ GPQT +RLPE++ + Sbjct: 63 LGRWKTLK----EKNPDVIIGVGGCVASQEGDHIRDRARYVDIIFGPQTLHRLPEMINQV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 K-GTRSPVVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR +V E +L GV E+ LLGQNVNAWRG+ DG TF+DLL ++ I G+ Sbjct: 173 EVSRPGDDIVLEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNMMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET DF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETQQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +G + V IT+V ++L G+++ Sbjct: 413 EGAPEMVGKFVDVEITEVFPNSLRGKVI 440 >gi|319639318|ref|ZP_07994069.1| hypothetical protein HMPREF0604_01693 [Neisseria mucosa C102] gi|317399502|gb|EFV80172.1| hypothetical protein HMPREF0604_01693 [Neisseria mucosa C102] Length = 440 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 284/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V DDAD+I+ NTC +REKA EK++S Sbjct: 2 KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKIFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ DL++ VAGCVA EGE I++R+P V+VV GPQT +RLP+L+ + Sbjct: 62 DLGRVRPLK----EKNPDLIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLPKLIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G +D + +KF+ L R G +AF++I EGC K+C++CVVPYTRG Sbjct: 118 KETTGLSQIDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ +GE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N VG + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G+ V Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLKGKPV 440 >gi|241759310|ref|ZP_04757416.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria flavescens SK114] gi|241320446|gb|EER56743.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria flavescens SK114] Length = 440 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 284/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V DDAD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ DL++ VAGCVA EGE I++R+P V+VV GPQT +RLP+L+ + Sbjct: 62 DLGRVRPLK----EKNPDLIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLPKLIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G +D + +KF+ L R G +AF++I EGC K+C++CVVPYTRG Sbjct: 118 KETTGLSQIDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ +GE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N +G + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G+ V Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLKGKPV 440 >gi|257092865|ref|YP_003166506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045389|gb|ACV34577.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 455 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/459 (44%), Positives = 291/459 (63%), Gaps = 25/459 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F++++GCQMN YDS +M D+ S+ + +S DDAD+I+ NTC +REKA E+V+ Sbjct: 3 RKLFIRTFGCQMNEYDSDKMADVLAGSEDIVKTDSPDDADIILFNTCSVREKAQERVFHD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR+R LK + DL++ V GCVA EG I+ R+P V+VV GPQT +RLP+L+ +R Sbjct: 63 LGRVRLLK----RANPDLVIGVGGCVASQEGAAIVARAPYVDVVFGPQTLHRLPQLIADR 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VD + +KF+ L R G +AF++I EGC KFC+FC+VPYTRG E Sbjct: 119 RRLGKSQVDISFPEIEKFDHLPPA-----RVAGASAFVSIMEGCSKFCSFCIVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--------EKCTFSDLLYSL 254 +SR V+ E L GV E+TLLGQNVNA+RG + G E + L+ + Sbjct: 174 VSRPFDDVLTEVAGLAAQGVREVTLLGQNVNAYRG-AMSGVGQAPAGDEAADLALLIEYI 232 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 +EI G+ R+RYTTSHPR++S LI + + L+ +LHLPVQSGSDR+L +M R +TA E Sbjct: 233 AEIPGIERIRYTTSHPREVSQRLIDIYARVPKLVSHLHLPVQSGSDRVLAAMKRGYTAIE 292 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 Y+ ++ ++R+ RPD+++SSDFIVGFPGET DDF TM L+D +G+ +FSF YS R GTP Sbjct: 293 YKSLVRKLRAARPDLSLSSDFIVGFPGETADDFEKTMKLIDDVGFDASFSFLYSSRPGTP 352 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSP 433 + + + +K ERLL LQ ++ E + + + VG + VL+E K+ G+L GR+ Sbjct: 353 AAELADDTPSTLKLERLLRLQARIDELAQAVSVSMVGTVQRVLVEGLSKKDSGELAGRTD 412 Query: 434 WLQSVVLNSKNHN----IGDIIKVRITDVKISTLYGELV 468 + V + + + + + VRIT +L GELV Sbjct: 413 NNRVVNFAAGSDDCTRWLDRFVDVRITSAMPHSLRGELV 451 >gi|226943049|ref|YP_002798122.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Azotobacter vinelandii DJ] gi|226717976|gb|ACO77147.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Azotobacter vinelandii DJ] Length = 442 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/448 (45%), Positives = 288/448 (64%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F++++GCQMN YDS RM D+ Q E + +AD+I+LNTC IREKA EKV+S Sbjct: 3 KKLFIETHGCQMNEYDSSRMADLLGEHQALELTENPAEADVILLNTCSIREKAQEKVFSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK K L++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELK----KRNPALVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R ++ VD + +KF+RL R G +AF+++ EGC K+C++CVVPYTRG E Sbjct: 119 RSTRQPQVDVSFPEIEKFDRLP-----EPRVDGPSAFVSVMEGCSKYCSYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +R DG F++LL+ ++ + G+ R Sbjct: 174 VSRPPEDVLAEVIHLAENGVREVTLLGQNVNGYRATTADGRPVDFAELLHLVAAVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LRYTTSHP + SD +I AH ++ L+ ++HLPVQSGSDRIL +M R HTA EY+ I ++ Sbjct: 234 LRYTTSHPLEFSDAIIAAHAEIPELVKFVHLPVQSGSDRILAAMKRNHTALEYKSRIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++ PDI+ISSDFIVGFPGET+ DF TM L++++G+ +FSF +SPR GTP + + + Sbjct: 294 KAAVPDISISSDFIVGFPGETEQDFAQTMKLIEEVGFDFSFSFVFSPRPGTPAAELPDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K +RL LQ ++ +Q + VG I +L+ + K+ G L GR+ + V Sbjct: 354 PEELKKQRLQILQNRIYQQGFEISRRMVGSIQRILVSDYSKKDPGMLQGRTENNRIVNFT 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 S + IG ++VRI D +L G L+ Sbjct: 414 SNDPRLIGQFVRVRIDDALPHSLRGSLL 441 >gi|227327390|ref|ZP_03831414.1| hypothetical protein PcarcW_08718 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 474 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 286/448 (63%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLGSTHGYELTEIAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ +L++ V GCVA EG I R+ V+V+ GPQT +RLPE++ Sbjct: 63 LGRWKTLKDL----NPNLIIGVGGCVASQEGTHIRERAHYVDVIFGPQTLHRLPEMINHV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R +VD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG Sbjct: 119 Q-GTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR V+ E +L GV E+ LLGQNVNA+RG+ DGE C+F++LL ++ I G+ Sbjct: 173 EVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETYDGEICSFAELLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I + D L+ +LHLPVQSGSDR+L M RRHTA EY+ II + Sbjct: 233 RVRFTTSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 + + RP I ISSDFIVGFPGET DF TM L+ + + ++SF YS R GTP ++M++ Sbjct: 293 LHNARPGILISSDFIVGFPGETQADFEQTMKLIADVNFDMSYSFVYSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q + F+ +G + +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYLLQERITQQAMRFSRLMLGTVQRILVEGTSRKSVMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G +V Sbjct: 413 EGTPDMIGKFVDVEIVDVYTNSLRGIVV 440 >gi|332975197|gb|EGK12097.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Kingella kingae ATCC 23330] Length = 440 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 286/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V + AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSEKMLAVLAEEHGGIEQVAEPEGADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+++LK K+ L++ VAGCVA EGE I+ R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVKHLK----KDNPQLIIGVAGCVASQEGEAIIERAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G +AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETTGLSQVDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ +GE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDNGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ SD +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFSDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N + +G I L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETAQINQSMLGTIQRCLVEGVSKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I ++++ IT+ + +L GELV Sbjct: 413 YGTPDLINQMVELEITEARTFSLTGELV 440 >gi|120597879|ref|YP_962453.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella sp. W3-18-1] gi|229890657|sp|A1RGV4|MIAB_SHESW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|120557972|gb|ABM23899.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella sp. W3-18-1] gi|319427326|gb|ADV55400.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella putrefaciens 200] Length = 474 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/447 (43%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ QGY +AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEDASEADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +L++ V GCVA EG+ I R+ V+++ GPQT +RLP+++E+ Sbjct: 63 LGRWKTLKD----KNPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPDMIEQV 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G K V+D + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 RRGDKAVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L ++ E +L + GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R Sbjct: 174 VSRPLDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGSICSFAELLRFVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + + +I + D L+ +LHLPVQSGSDRIL +M R H A EY+ II R+ Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R R I ISSDFI+GFPGET +DF TM L+++IG+ +FSF YS R GTP +++ + V Sbjct: 294 RKAREGIQISSDFIIGFPGETKEDFADTMKLIEEIGFDHSFSFIYSARPGTPAADLPDNV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 D K +RL LQ ++ +Q + ++ +G + +L+E K +L GR+ + V Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +IG + V I DV ++L G+ + Sbjct: 414 GLPKHIGTFVDVEIVDVYTNSLRGKFI 440 >gi|146293949|ref|YP_001184373.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella putrefaciens CN-32] gi|229890654|sp|A4Y9E1|MIAB_SHEPC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|145565639|gb|ABP76574.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella putrefaciens CN-32] Length = 474 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/447 (43%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ QGY +AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEDASEADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +L++ V GCVA EG+ I R+ V+++ GPQT +RLP+++E+ Sbjct: 63 LGRWKTLKD----KNPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPDMIEQV 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G K V+D + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 RRGDKAVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L ++ E +L + GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R Sbjct: 174 VSRPLDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGSICSFAELLRFVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + + +I + D L+ +LHLPVQSGSDRIL +M R H A EY+ II R+ Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R R I ISSDFI+GFPGET +DF TM L+++IG+ +FSF YS R GTP +++ + V Sbjct: 294 RKAREGIQISSDFIIGFPGETKEDFADTMKLIEEIGFDHSFSFIYSARPGTPAADLPDNV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 D K +RL LQ ++ +Q + ++ +G + +L+E K +L GR+ + V Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +IG + V I DV ++L G+ + Sbjct: 414 GLPKHIGTFVDVEIVDVYTNSLRGKFI 440 >gi|153001812|ref|YP_001367493.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella baltica OS185] gi|160876545|ref|YP_001555861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella baltica OS195] gi|304410288|ref|ZP_07391907.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS183] gi|307302001|ref|ZP_07581759.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica BA175] gi|229890649|sp|A6WRJ1|MIAB_SHEB8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890650|sp|A9KZZ3|MIAB_SHEB9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|151366430|gb|ABS09430.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS185] gi|160862067|gb|ABX50601.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS195] gi|304351697|gb|EFM16096.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS183] gi|306914039|gb|EFN44460.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica BA175] gi|315268739|gb|ADT95592.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS678] Length = 474 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/447 (43%), Positives = 284/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ QGY +AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEASEADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +L++ V GCVA EG+ I R+ V+++ GPQT +RLPE++E+ Sbjct: 63 LGRWKTLKD----KNPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIEQV 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G K V+D + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 RRGDKAVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L + GV E+ LLGQNVNA+RG DG CTF++LL ++ I G+ R Sbjct: 174 VSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGAICTFAELLRFVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + + +I + D L+ +LHLPVQSGSDRIL +M R H A EY+ II R+ Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R R I ISSDFI+GFPGET +DF TM L++ IG+ +FSF YS R GTP +++ + V Sbjct: 294 RKAREGIQISSDFIIGFPGETKEDFADTMKLIEDIGFDHSFSFIYSARPGTPAADLPDNV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 D K +RL LQ ++ +Q + ++ +G + +L+E K +L GR+ + V Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG + V I DV ++L G + Sbjct: 414 GQPKHIGTFVDVEIVDVYTNSLRGVFI 440 >gi|77748655|ref|NP_642776.2| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas axonopodis pv. citri str. 306] gi|229891228|sp|Q8PJR9|MIAB_XANAC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 484 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/451 (44%), Positives = 290/451 (64%), Gaps = 19/451 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++K++GCQMN YDS +M D+ S+G E + ++AD++++NTC IREKA EKV+S L Sbjct: 37 KLYIKTHGCQMNEYDSAKMADVLAASEGLELTDDPEEADVVLVNTCSIREKAQEKVFSQL 96 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + LK G +++ V GCVA EGE I++R+P V++V GPQT +RLPEL+ RAR Sbjct: 97 GRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELI-RAR 151 Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 GK VD + +KF+RL R G +AF++I EGC K+C+FCVVPYTRG E Sbjct: 152 RESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGEE 206 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FSDL---LYSLSEI 257 +SR V+ E +L GV EI LLGQNVNA+RG ++DL + ++++I Sbjct: 207 VSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYADLGLLIRTIAQI 266 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +G+ R+R+TTSHP + SD L+ A+ D+ L YLHLPVQ+GSDRIL +M R +TA E++ Sbjct: 267 EGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEFKS 326 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 I ++R+VRPDI+ISSDFIVGFPGET+ DF TM L++ +G+ Q+FSF YS R GTP S+ Sbjct: 327 KIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPGTPASD 386 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQ 436 + + E VK RL LQ + S + + VG + VL+E ++ +L G+S ++ Sbjct: 387 LQDDTPEAVKQARLARLQAHINAHAASISQSMVGSVQRVLVEGPSRRDPNELTGKSENMR 446 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 V IG + V IT+ ++L G + Sbjct: 447 PVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 477 >gi|325925030|ref|ZP_08186452.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas perforans 91-118] gi|325544542|gb|EGD15903.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xanthomonas perforans 91-118] Length = 470 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/455 (44%), Positives = 290/455 (63%), Gaps = 17/455 (3%) Query: 21 CIVPQRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEK 79 +V + ++K++GCQMN YDS +M D+ S+G E ++ ++AD++++NTC IREKA EK Sbjct: 18 AVVRGKLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSIREKAQEK 77 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 V+S LGR + LK G +++ V GCVA EGE I++R+P V++V GPQT +RLPEL Sbjct: 78 VFSQLGRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPEL 133 Query: 140 LE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + R GK VD + +KF+RL R G +AF++I EGC K+C+FCVVPYT Sbjct: 134 IRARRESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYT 188 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FSDL---LYS 253 RG E+SR V+ E +L GV EI LLGQNVNA+RG ++DL + + Sbjct: 189 RGEEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYADLGLLIRT 248 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 +++I G+ R+R+TTSHP + SD L+ A+ D+ L YLHLPVQ+GSDRIL +M R +TA Sbjct: 249 IAQIDGIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTAL 308 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 E++ I ++R+VRPDI+ISSDFIVGFPGET+ DF TM L++ +G+ Q+FSF YS R GT Sbjct: 309 EFKSKIRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPGT 368 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432 P S++ + E VK RL LQ + S + + VG + VL+E ++ +L G+S Sbjct: 369 PASDLQDDTPEAVKQARLARLQAHINAHAASISQSMVGSVQRVLVEGPSRRDPNELTGKS 428 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ V IG + V IT+ ++L G + Sbjct: 429 ENMRPVNFPGNPRLIGQFVDVLITEAMSNSLRGRI 463 >gi|73540220|ref|YP_294740.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ralstonia eutropha JMP134] gi|123746634|sp|Q475N7|MIAB_RALEJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|72117633|gb|AAZ59896.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ralstonia eutropha JMP134] Length = 450 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/456 (44%), Positives = 289/456 (63%), Gaps = 20/456 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ FVK+YGCQMN YDS +M D+ SQG E ++++DAD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFVKTYGCQMNEYDSDKMVDVLNASQGLEPTDNVEDADVILFNTCSVREKAQEKVFSE 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR++ LK + DL++ V GCVA EG I+ R+P V+VV GPQT +RLP+L+ R Sbjct: 62 LGRMKALKAVK----PDLVIGVGGCVASQEGASIVSRAPYVDVVFGPQTLHRLPDLIARR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 118 QRTGQSQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L + GV E+TLLGQNVNA+RG G E F+ L+ ++EI G+ Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYRGAMGGTSEIADFALLIEYVAEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP++ + L++ +G D L+ +LHLPVQ SDR+L +M R ++ EY+ II R Sbjct: 233 RIRYTTSHPKEFTSRLVELYGRCDKLVNHLHLPVQHASDRVLMAMKRGYSVLEYKSIIRR 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R +RPD+++SSDFIVGFPGETD DF M L++++GY +FSF +SPR GTP +N+ + Sbjct: 293 LRMLRPDMSMSSDFIVGFPGETDADFDKLMALIEEVGYDTSFSFIFSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433 VK RL LQ + E + VG + +L+E K+ +L GR+ Sbjct: 353 TPHEVKLRRLQHLQATIEENVQRISRNMVGSVQRILVEGPSRKDPTELHGRTENNRVVNF 412 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L V ++ IG ++ V IT +L GE+VV Sbjct: 413 ALPGVPQAQRDRMIGQMVDVSITQAFPHSLRGEIVV 448 >gi|325127523|gb|EGC50449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis N1568] Length = 442 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 282/448 (62%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V DDAD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ L++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ DGE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N VG + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETAHINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G+ V Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKTV 440 >gi|225076607|ref|ZP_03719806.1| hypothetical protein NEIFLAOT_01655 [Neisseria flavescens NRL30031/H210] gi|224952107|gb|EEG33316.1| hypothetical protein NEIFLAOT_01655 [Neisseria flavescens NRL30031/H210] Length = 440 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V D+AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ DL++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVRPLK----EKNPDLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ +GE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N VG + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G+ V Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLKGKPV 440 >gi|229890696|sp|Q39D51|MIAB_BURS3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 457 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/454 (44%), Positives = 293/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+R LK + K G LL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ R Sbjct: 63 LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RESGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALAAGSSEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGET+DDF M LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEDDFDKMMALVHEMSYDTSFSFIYSPRPGTPAANLHD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 +VK +RL LQ + E + + VG++ +L+E K+ +L GR+ + V Sbjct: 354 DTPRDVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L S IG +I V+I +L GELV+ Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 447 >gi|148244830|ref|YP_001219524.1| tRNA-thiotransferase [Candidatus Vesicomyosocius okutanii HA] gi|229891022|sp|A5CW77|MIAB_VESOH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|146326657|dbj|BAF61800.1| tRNA-thiotransferase [Candidatus Vesicomyosocius okutanii HA] Length = 442 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 192/447 (42%), Positives = 286/447 (63%), Gaps = 11/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + +++++GCQMN YDS +M D+ S + AD+++LNTC IREKA +K++ Sbjct: 3 NKLYIRTFGCQMNEYDSNKMVDILKHSHDLTLTDDATSADVLLLNTCSIREKAQDKLFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR LKN + +L++ V GCVA EGE IL+R+P V+++ GPQT +RLP +L A Sbjct: 63 LGRWSKLKN----KNPNLIIGVGGCVASQEGELILKRTPYVDIIFGPQTLHRLPNMLNDA 118 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K+ +D + +KF+ L R VTAF++I EGC K+CTFC+VPYTRG E Sbjct: 119 LNNKKTSIDISFPEIEKFDHLP-----KPRTNSVTAFVSIMEGCSKYCTFCIVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR + V++E + L GV EI LLGQNVNA++G DGE + L+ +++I G+ R Sbjct: 174 ISRPFNDVINEVKILASQGVREINLLGQNVNAYQGSMNDGEVSDLALLINIVAKISGIKR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP SD LI+A+ ++ L+ +LHLPVQSGSD+IL+ M R + + EY+ I ++ Sbjct: 234 IRYTTSHPNQFSDSLIEAYAEVPELVSHLHLPVQSGSDKILRLMKRGYMSIEYKSKIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RPDI+ISSDFI+GFPGE + DF TM L+D+IG+ ++FSF YS R GTP ++ + + Sbjct: 294 RKIRPDISISSDFIIGFPGENEKDFLDTMILIDEIGFDKSFSFIYSVRPGTPAASYPDDI 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 D VK +RL +QK + + +G I +VL+E K+ +L GR+ +++ Sbjct: 354 DIQVKKQRLALIQKTINNNTEHISQLMIGSIQKVLVENITKKGNELFGRTENMRNTHFKG 413 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 IG I+ V+IT + ++L G+L+ Sbjct: 414 DKSLIGQIVNVKITKGRGNSLMGDLLT 440 >gi|167625134|ref|YP_001675428.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella halifaxensis HAW-EB4] gi|229890651|sp|B0TR38|MIAB_SHEHH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|167355156|gb|ABZ77769.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella halifaxensis HAW-EB4] Length = 475 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/447 (43%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ +GY ++ ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDEYEGYTLTDNAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +L++ V GCVA EG+ I R+ V+++ GPQT +RLPE++++ Sbjct: 63 LGRWKTLKDKK----PELIIGVGGCVASQEGKAIKERAQCVDLIFGPQTLHRLPEMIDQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK+ V+D + +KF+RL R G +AF++I EGC K+C+FCVVPYTRG E Sbjct: 119 RAGKKAVIDVSFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L ++ E +L + GV E+ LLGQNVNA+RG D E CTF++LL ++ I G+ R Sbjct: 174 VSRPLDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + + +I + D L+ +LHLPVQSGSD IL M R H A EY+ II R+ Sbjct: 234 LRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDLILTQMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGE+ DF TM L++ I + +FSF YS R GTP +++ + V Sbjct: 294 RKARPDILISSDFIIGFPGESKQDFADTMKLIEDIQFDHSFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 + K ERL LQ ++ +Q + ++ VG + +L+E K +L GR+ + V Sbjct: 354 SLDEKKERLAILQDRITQQAMRYSRQMVGTVQRILVEGPSVKNPMELRGRTENSRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG + V I DV ++L G + Sbjct: 414 GMHKHIGKFVDVEIVDVYTNSLRGVFI 440 >gi|261822377|ref|YP_003260483.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pectobacterium wasabiae WPP163] gi|261606390|gb|ACX88876.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pectobacterium wasabiae WPP163] Length = 474 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 287/448 (64%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLGSTHGYELTEIAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ +L++ V GCVA EG I R+ V+V+ GPQT +RLPE++ Sbjct: 63 LGRWKALKDL----NPNLIIGVGGCVASQEGAHIRERAHYVDVIFGPQTLHRLPEMINHV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R +VD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG Sbjct: 119 Q-GTRSPIVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR V+ E +L GV E+ LLGQNVNA+RG+ DGE C+F++LL ++ I G+ Sbjct: 173 EVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETYDGEICSFAELLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M RRHTA EY+ II + Sbjct: 233 RVRFTTSHPIEFTDDIIRVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 + + RP I ISSDFI+GFPGET DF TM L+ + + ++SF YS R GTP ++M++ Sbjct: 293 LHNARPGILISSDFIIGFPGETQADFEQTMKLIADVNFDMSYSFVYSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q + F+ +G + +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYLLQERITQQAMRFSRLMLGTVQRILVEGTSRKSVMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G +V Sbjct: 413 EGTPDMIGKFVDVEIVDVYTNSLRGIVV 440 >gi|296103382|ref|YP_003613528.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057841|gb|ADF62579.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 474 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 194/448 (43%), Positives = 289/448 (64%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + +AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDTTHGYQLTENAKEADVLLLNTCSIREKAQEKVFHV 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EG+ I +R+P V++V GPQT +RLPE++ + Sbjct: 63 LGRWKLLK----RKNPDLIIGVGGCVASQEGKLIRQRAPYVDIVFGPQTLHRLPEMINKV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDVSFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F++LL ++ I G+ Sbjct: 173 EVSRPADDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFAELLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I + D L+ +LHLP+Q GSDR+L M R HT EY+ I + Sbjct: 233 RIRFTTSHPMEFTDDIIDVYRDTPELVSFLHLPIQCGSDRVLNLMGRPHTVLEYKSTIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPDI ISSDFIVGFPGET DDF TM L+ ++ + ++SF +S R GTP ++M++ Sbjct: 293 LREARPDIQISSDFIVGFPGETADDFERTMKLIGEVNFDVSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q +++ +G + +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQANAWSRRMLGTVQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I +V ++L G+LV Sbjct: 413 EGTPDMIGKFVDVEIVEVLTNSLRGKLV 440 >gi|184159545|ref|YP_001847884.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter baumannii ACICU] gi|332873010|ref|ZP_08440969.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii 6014059] gi|229890409|sp|B2HZ55|MIAB_ACIBC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|183211139|gb|ACC58537.1| 2-methylthioadenine synthetase [Acinetobacter baumannii ACICU] gi|322509455|gb|ADX04909.1| 2-methylthioadenine synthetase [Acinetobacter baumannii 1656-2] gi|323519476|gb|ADX93857.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter baumannii TCDC-AB0715] gi|332738792|gb|EGJ69660.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii 6014059] Length = 483 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/455 (43%), Positives = 297/455 (65%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GCQMN YDS RM D+ S GY N+ ++AD++++NTC IREKA EKV+S Sbjct: 31 KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTNNPNEADILLMNTCSIREKAQEKVFSE 90 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 LGR R LK ++ DL++ V GCVA EG+ I +R+P V+++ GPQT +RLP++L++ Sbjct: 91 LGRWRKLK----EQNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146 Query: 143 -ARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 A+ K ++VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 147 HAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EI+LLGQNVN +RG+ +G CTF +LL ++ Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI G+ RLRYTTSHP + SD LI+ + DL ++ +LHLPVQSGS+ +LK+M R HT Y Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLKAMKRNHTIDVY 321 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I ++R +RPD+ +SSDFI+GFPGETD++F T+ + + + ++SF YS R GTP Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 S++ + E+VK ERL +Q+ +++ + DA +G+I VLIEK ++ LVG + Sbjct: 382 SDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILVGTADN 441 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 + V IG ++ IT++K ++ +YGEL+ Sbjct: 442 TRLVTFVGDASWIGRFAEIEITEIKTLNLVYGELL 476 >gi|239504221|ref|ZP_04663531.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii AB900] Length = 483 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/455 (43%), Positives = 297/455 (65%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GCQMN YDS RM D+ S GY N+ ++AD++++NTC IREKA EKV+S Sbjct: 31 KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTNNPNEADILLMNTCSIREKAQEKVFSE 90 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 LGR R LK ++ DL++ V GCVA EG+ I +R+P V+++ GPQT +RLP++L++ Sbjct: 91 LGRWRKLK----EQNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146 Query: 143 -ARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 A+ K ++VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 147 HAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EI+LLGQNVN +RG+ +G CTF +LL ++ Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI G+ RLRYTTSHP + SD LI+ + DL ++ +LHLPVQSGS+ +LK+M R HT Y Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLKAMKRNHTIDVY 321 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I ++R +RPD+ +SSDFI+GFPGETD++F T+ + + + ++SF YS R GTP Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLNFDHSYSFVYSKRPGTPA 381 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 S++ + E+VK ERL +Q+ +++ + DA +G+I VLIEK ++ LVG + Sbjct: 382 SDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILVGTADN 441 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 + V +G ++ IT++K ++ +YGEL+ Sbjct: 442 TRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476 >gi|194097636|ref|YP_002000671.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Neisseria gonorrhoeae NCCP11945] gi|239998169|ref|ZP_04718093.1| Bifunctional enzyme involved in thiolation and methylation of tRNA [Neisseria gonorrhoeae 35/02] gi|240079933|ref|ZP_04724476.1| Bifunctional enzyme involved in thiolation and methylation of tRNA [Neisseria gonorrhoeae FA19] gi|240114885|ref|ZP_04728947.1| Bifunctional enzyme involved in thiolation and methylation of tRNA [Neisseria gonorrhoeae PID18] gi|240122726|ref|ZP_04735682.1| Bifunctional enzyme involved in thiolation and methylation of tRNA [Neisseria gonorrhoeae PID332] gi|240124916|ref|ZP_04737802.1| Bifunctional enzyme involved in thiolation and methylation of tRNA [Neisseria gonorrhoeae SK-92-679] gi|240127427|ref|ZP_04740088.1| Bifunctional enzyme involved in thiolation and methylation of tRNA [Neisseria gonorrhoeae SK-93-1035] gi|254492946|ref|ZP_05106117.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|260441300|ref|ZP_05795116.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Neisseria gonorrhoeae DGI2] gi|268594020|ref|ZP_06128187.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268596073|ref|ZP_06130240.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268600543|ref|ZP_06134710.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268681325|ref|ZP_06148187.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268683496|ref|ZP_06150358.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268685802|ref|ZP_06152664.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291044655|ref|ZP_06570364.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293397764|ref|ZP_06641970.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria gonorrhoeae F62] gi|229890573|sp|B4RNW8|MIAB_NEIG2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|193932926|gb|ACF28750.1| Bifunctional enzyme involved in thiolation and methylation of tRNA [Neisseria gonorrhoeae NCCP11945] gi|226511986|gb|EEH61331.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268547409|gb|EEZ42827.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268549861|gb|EEZ44880.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268584674|gb|EEZ49350.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268621609|gb|EEZ54009.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268623780|gb|EEZ56180.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268626086|gb|EEZ58486.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291011549|gb|EFE03545.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291611710|gb|EFF40779.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria gonorrhoeae F62] gi|317163459|gb|ADV07000.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Neisseria gonorrhoeae TCDC-NG08107] Length = 442 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V D+AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ L++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ DGE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N +G + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G++V Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440 >gi|78067490|ref|YP_370259.1| tRNA-i(6)A37 modification enzyme MiaB [Burkholderia sp. 383] gi|77968235|gb|ABB09615.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. 383] Length = 498 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/454 (44%), Positives = 293/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 44 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 103 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+R LK + K G LL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ R Sbjct: 104 LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 159 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 160 RESGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 214 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 215 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALAAGSSEIADFATLIEYVADIPGI 274 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 275 ERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 334 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGET+DDF M LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 335 KLRAIRPDLSLSTDMIVGFPGETEDDFDKMMALVHEMSYDTSFSFIYSPRPGTPAANLHD 394 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 +VK +RL LQ + E + + VG++ +L+E K+ +L GR+ + V Sbjct: 395 DTPRDVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 454 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L S IG +I V+I +L GELV+ Sbjct: 455 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 488 >gi|237809456|ref|YP_002893896.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Tolumonas auensis DSM 9187] gi|237501717|gb|ACQ94310.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Tolumonas auensis DSM 9187] Length = 476 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/447 (44%), Positives = 285/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GYE ++ADL+VLNTC IREKA EK++ Sbjct: 3 KKLHIKTWGCQMNEYDSAKMVDLLTSSLGYETTELPEEADLLVLNTCSIREKAQEKLFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K+ +L++ V GCVA EG+ I R+P V+VV GPQT +RLP ++++ Sbjct: 63 LGRWKELK----KKNPELVIAVGGCVASQEGKAIRSRAPNVDVVFGPQTLHRLPNMIKQV 118 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G VD + +KF+ L R G TA+++I EGC K+CT+CVVPYTRG E Sbjct: 119 KAGHGAQVDVSFPEIEKFDNLP-----EPRAEGPTAYVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E +L + GV E+ LLGQNVNA+RG+ DG C+F+ LL ++ I G+ R Sbjct: 174 VSRPQDDVLYEIAQLAEQGVREVNLLGQNVNAYRGETYDGGICSFAQLLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + +D +I+ + D L+ +LHLPVQSGSD+IL M R HTA EY+ I ++ Sbjct: 234 IRYTTSHPIEFTDDIIEVYKDTPELVNFLHLPVQSGSDKILSMMKRPHTALEYKSKIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++VRPDI ISSDFIVGFPGETD+DF TM L++ I + ++SF +S R GTP ++M + Sbjct: 294 KAVRPDILISSDFIVGFPGETDEDFAKTMKLIEDIQFDTSYSFVFSARPGTPAADMPDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 VK ERL LQ+ + Q + ++ G I +L+E + +L GR+ + V Sbjct: 354 PMEVKKERLAHLQQTINNQAMQYSRQMHGTIQRILVEGPSRHDIMELCGRTENNRVVNFA 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V IT+ + +L G+++ Sbjct: 414 GDARLIGRFVDVEITEARPHSLRGKII 440 >gi|220935460|ref|YP_002514359.1| 2-alkenal reductase [Thioalkalivibrio sp. HL-EbGR7] gi|219996770|gb|ACL73372.1| 2-alkenal reductase [Thioalkalivibrio sp. HL-EbGR7] Length = 453 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 204/445 (45%), Positives = 286/445 (64%), Gaps = 12/445 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++++GCQMN YDS +M D+ S+G + + AD+++LNTC IREKA EKV+S L Sbjct: 4 KVYIQTHGCQMNEYDSGKMLDVLRESEGMVLTDDPEQADVLLLNTCSIREKAQEKVFSLL 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR R LK +R +++ V GCVA EGE + R+P V+VV GPQT +RLPE++ AR Sbjct: 64 GRWRALKEARPG----VVIGVGGCVASQEGEALRERAPFVDVVFGPQTLHRLPEMVRSAR 119 Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G VVD + +KF+RL R G +AF++I EGC K+CTFCVVPYTRG EI Sbjct: 120 LKGLPVVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCTFCVVPYTRGEEI 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR V+ E +L GV EI LLGQNVNA+RG DGE + L++ ++ + G+ R+ Sbjct: 175 SRPFDDVLAEVAQLAAQGVREINLLGQNVNAYRGPMHDGEIADLALLIHYVAAVDGIERI 234 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP + SD LI+A ++ L+ ++HLPVQSGSDRIL +M R HTA EY+ I R+R Sbjct: 235 RFTTSHPVEFSDSLIRAFAEVPELVSHVHLPVQSGSDRILAAMKRGHTALEYKSKIRRLR 294 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 RPDI++SSDFIVGFPGETD DF ATM+L++++G+ Q+FSF YS R GTP S++ + V Sbjct: 295 EARPDISLSSDFIVGFPGETDADFEATMELIEQVGFDQSFSFIYSRRPGTPASSLPDDVP 354 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442 VK RL LQ ++ E + + + VG +L+E K+ ++ GR+ + V + Sbjct: 355 LEVKKARLARLQARINEMAQAISQSMVGSRQRILVEGPSKKDPAQMAGRTANNRVVNFDG 414 Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467 G + V IT ++L G L Sbjct: 415 AAELAGRFVDVHITQALANSLRGRL 439 >gi|161523785|ref|YP_001578797.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia multivorans ATCC 17616] gi|189351454|ref|YP_001947082.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia multivorans ATCC 17616] gi|221200110|ref|ZP_03573153.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans CGD2M] gi|221206737|ref|ZP_03579749.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans CGD2] gi|229890459|sp|A9AFF8|MIAB_BURM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|160341214|gb|ABX14300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans ATCC 17616] gi|189335476|dbj|BAG44546.1| bifunctional enzyme [Burkholderia multivorans ATCC 17616] gi|221173392|gb|EEE05827.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans CGD2] gi|221180349|gb|EEE12753.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans CGD2M] Length = 457 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/454 (43%), Positives = 292/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ +S +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDSPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK ++ DLL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ Sbjct: 63 LGRVRELKEAK----PDLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G TAF++I EGC K+C++CVVPYTRG E Sbjct: 119 RTSGRAQVDITFPEIEKFDHLPPA-----RVEGPTAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSSEVADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGET++DF M LV + Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDLIVGFPGETEEDFDKMMALVHDMRYDTSFSFIYSPRPGTPAANLHD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 +VK +RL +Q + E + + VG++ +L+E K+ +L GR+ + V Sbjct: 354 DTPRDVKLKRLQLVQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L + IG +I V+I +L GELV+ Sbjct: 414 FPAPLAAHPRLIGQMIDVKINHAYPHSLRGELVL 447 >gi|54310003|ref|YP_131023.1| putative 2-methylthioadenine synthetase [Photobacterium profundum SS9] gi|81398996|sp|Q6LNA5|MIAB_PHOPR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|46914442|emb|CAG21221.1| putative 2-methylthioadenine synthetase [Photobacterium profundum SS9] Length = 474 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/449 (44%), Positives = 287/449 (63%), Gaps = 12/449 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +P++ +K++GCQMN YDS +M D+ + G+E ++AD+++LNTC IREKA EKV+ Sbjct: 1 MPKKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEVPEEADVLLLNTCSIREKAQEKVF 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 LGR + LK + DL++ V GCVA EG+ I +R+P V+V+ GPQT +RLP++++ Sbjct: 61 HQLGRWKRLKEKK----PDLVIGVGGCVATQEGDAIRKRAPYVDVIFGPQTLHRLPQMIK 116 Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 ++ V+D + +KF+ L R GVTAF++I EGC K+CT+CVVPYTRG Sbjct: 117 DSQSNHGPVMDISFPEVEKFDNLP-----EPRADGVTAFVSIMEGCSKYCTYCVVPYTRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E+SR + V+ E +L + GV E+ LLGQNVNA+RG DGE +F++LL ++ I G+ Sbjct: 172 EEVSRPIDDVLYEVAQLAEQGVREVNLLGQNVNAFRGPTHDGEMASFAELLRLVAAIDGI 231 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP + +D +I+ + D L+ YLHLPVQSGSDRIL M R HT EY+ I Sbjct: 232 DRIRYTTSHPIEFTDDIIEVYTDTPELVNYLHLPVQSGSDRILTMMKRPHTVLEYKSKIR 291 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R VRPDI +SSDFIV FPGE+D DF+ TM L+ I + ++SF +SPR GTP ++ Sbjct: 292 KLRKVRPDITMSSDFIVAFPGESDQDFQDTMKLIRDIDFDISYSFVFSPRPGTPAADYPC 351 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439 + E VK ERL LQ+++ Q + + +L+E ++ +L GR+ + V Sbjct: 352 DISEKVKKERLYELQQQINTQAMRHARQMLNTEQRILVEGPSRKNIMELRGRTENNRIVN 411 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V ITDV ++L GELV Sbjct: 412 FEGSAELIGQFVDVNITDVFTNSLRGELV 440 >gi|330887928|gb|EGH20589.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. mori str. 301020] Length = 442 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 282/448 (62%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + ++++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +RG DG +DL+ ++ + G+ R Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTS P + SD LI+AH ++ L+ +LHLPVQSGSDRIL +M R HT EY+ + ++ Sbjct: 234 IRYTTSPPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I+ISSDFIVGFPGET+ DF TM L++ +G+ +FSF YSPR GTP +++ + Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG I +L+ + K+ G+L GR+ + V Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I D + +L G L+ Sbjct: 414 CNNPKLIGQFADVHIDDAQPHSLRGSLL 441 >gi|260557080|ref|ZP_05829297.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii ATCC 19606] gi|260409686|gb|EEX02987.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii ATCC 19606] Length = 483 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/455 (43%), Positives = 297/455 (65%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GCQMN YDS RM D+ S GY N+ ++AD++++NTC IREKA EKV+S Sbjct: 31 KKLYIETQGCQMNEYDSHRMADLLGDSHGYMLTNNPNEADILLMNTCSIREKAQEKVFSE 90 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 LGR R LK ++ DL++ V GCVA EG+ I +R+P V+++ GPQT +RLP++L++ Sbjct: 91 LGRWRKLK----EQNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146 Query: 143 -ARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 A+ K ++VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 147 HAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EI+LLGQNVN +RG+ +G CTF +LL ++ Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI G+ RLRYTTSHP + SD LI+ + DL ++ +LHLPVQSGS+ +LK+M R HT Y Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLKAMKRNHTIDVY 321 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I ++R +RPD+ +SSDFI+GFPGETD++F T+ + + + ++SF YS R GTP Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 S++ + E+VK ERL +Q+ +++ + DA +G+I VLIEK ++ LVG + Sbjct: 382 SDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILVGTADN 441 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 + V +G ++ IT++K ++ +YGEL+ Sbjct: 442 TRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476 >gi|240013351|ref|ZP_04720264.1| Bifunctional enzyme involved in thiolation and methylation of tRNA [Neisseria gonorrhoeae DGI18] gi|240015796|ref|ZP_04722336.1| Bifunctional enzyme involved in thiolation and methylation of tRNA [Neisseria gonorrhoeae FA6140] gi|240112139|ref|ZP_04726629.1| Bifunctional enzyme involved in thiolation and methylation of tRNA [Neisseria gonorrhoeae MS11] gi|240117089|ref|ZP_04731151.1| Bifunctional enzyme involved in thiolation and methylation of tRNA [Neisseria gonorrhoeae PID1] gi|240120424|ref|ZP_04733386.1| Bifunctional enzyme involved in thiolation and methylation of tRNA [Neisseria gonorrhoeae PID24-1] gi|268598198|ref|ZP_06132365.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268602776|ref|ZP_06136943.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268582329|gb|EEZ47005.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268586907|gb|EEZ51583.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] Length = 442 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V D+AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ L++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ DGE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLAEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N +G + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G++V Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440 >gi|52841564|ref|YP_095363.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54294222|ref|YP_126637.1| hypothetical protein lpl1287 [Legionella pneumophila str. Lens] gi|54297243|ref|YP_123612.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Legionella pneumophila str. Paris] gi|148358866|ref|YP_001250073.1| tRNA thiotransferase [Legionella pneumophila str. Corby] gi|296106913|ref|YP_003618613.1| bifunctional enzyme involved in thiolation and methylation of tRNA [Legionella pneumophila 2300/99 Alcoy] gi|81368736|sp|Q5WX12|MIAB_LEGPL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|81370679|sp|Q5X5N2|MIAB_LEGPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|81377570|sp|Q5ZVV6|MIAB_LEGPH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890555|sp|A5IBH7|MIAB_LEGPC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|52628675|gb|AAU27416.1| tRNA thiotransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53751028|emb|CAH12439.1| hypothetical protein lpp1288 [Legionella pneumophila str. Paris] gi|53754054|emb|CAH15527.1| hypothetical protein lpl1287 [Legionella pneumophila str. Lens] gi|148280639|gb|ABQ54727.1| tRNA thiotransferase [Legionella pneumophila str. Corby] gi|295648814|gb|ADG24661.1| bifunctional enzyme involved in thiolation and methylation of tRNA [Legionella pneumophila 2300/99 Alcoy] Length = 447 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K+ GCQMN YDS +M ++ + S G + + ++DAD+I+LNTC IREKA EKV+S Sbjct: 3 KKLYIKTNGCQMNEYDSSKMAEVLYASHGLVKTDQVEDADVILLNTCSIREKAQEKVFSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LG+ R K + +L+ V GCVA EG +I++R+P V++V GPQT +RLP LL ER Sbjct: 63 LGQWREYK----AKNPHVLIGVGGCVASQEGSDIIKRAPFVDIVFGPQTLHRLPALLNER 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K VVD + +KF+ L R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 LEKNKSVVDISFPEIEKFDHLPA-----PRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR V+ E +L GV EI LLGQNVN +RG +G+ + L++ ++ I G+ R Sbjct: 174 ISRPFDDVLAECYQLASQGVREINLLGQNVNDYRGIMDNGDIADLALLIHYIAAIDGIGR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP S+ LI A+ ++ L +LHLPVQSGSDRIL M R +TA E++ I ++ Sbjct: 234 IRFTTSHPLAFSENLINAYAEVPELANHLHLPVQSGSDRILSLMKRGYTALEFKSKIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RPDI +S+D IVGFPGETD DF+ TMDLV +IG+ +FSF YSPR GTP +N+ + Sbjct: 294 RKIRPDIRLSTDIIVGFPGETDKDFQDTMDLVHEIGFDTSFSFIYSPRPGTPAANLPDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441 +K +RL LQ +L ++++ +G ++L+ K+ +L GR+ + V + Sbjct: 354 PMEIKKQRLQILQNRLLMNAARYSESMIGSKQKILVTGFSKKSSQQLSGRTECNRVVNFD 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 H IG I V+I+D ++L G L+ Sbjct: 414 GPPHLIGQFIDVQISDALPNSLRGRLL 440 >gi|70732737|ref|YP_262500.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas fluorescens Pf-5] gi|123652715|sp|Q4K5I3|MIAB_PSEF5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|68347036|gb|AAY94642.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas fluorescens Pf-5] Length = 442 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + D+++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPDMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDVA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RITKLPQVDVSFPEIEKFDHLP-----EPRIDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +RG+ DG ++L+ ++ I G+ R Sbjct: 174 VSRPFDDVIAEIIHLAENGVREVTLLGQNVNGYRGQTHDGRMADLAELIRVVAAIDGIER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH ++ L+ +LHLPVQSGSDRIL +M R HTA EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTALEYKSKLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I ISSDFIVGFPGET+ DF+ TM L++ +G+ ++SF YS R GTP +++ ++ Sbjct: 294 RAAVPGICISSDFIVGFPGETEKDFQQTMKLIEDVGFDFSYSFVYSQRPGTPAADLADET 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E VK ERL LQ +L +Q + VG +L+ + K+ G+L GR+ + V Sbjct: 354 PEAVKKERLNALQHRLNQQGFEISRQMVGSTQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I + +L G L+ Sbjct: 414 CDNPTLIGQFADVYIDSAQPHSLRGSLL 441 >gi|167585516|ref|ZP_02377904.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ubonensis Bu] Length = 457 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/454 (43%), Positives = 292/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK ++ DLL+ V GCVA EG I+ R+P V++V GPQT +RLP+++++ Sbjct: 63 LGRVRELKEAK----PDLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDQR 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSSEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLIDMYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGET+ DF M LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDLIVGFPGETEADFDKMMALVHEMSYDTSFSFIYSPRPGTPAANLHD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 VK +RL LQ + E + + VG++ +L+E K+ +L GR+ + V Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L S IG +I V+I +L GELV+ Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 447 >gi|83719624|ref|YP_441148.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia thailandensis E264] gi|167617973|ref|ZP_02386604.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia thailandensis Bt4] gi|257140190|ref|ZP_05588452.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia thailandensis E264] gi|123537978|sp|Q2T101|MIAB_BURTA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|83653449|gb|ABC37512.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia thailandensis E264] Length = 457 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/454 (43%), Positives = 292/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ +S +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDSPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+R LK ++ DLL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ R Sbjct: 63 LGRVRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGAHEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + L+ + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSLIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RP++++S+D IVGFPGET+ DF TM LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPNLSLSTDIIVGFPGETEADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLAD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 VK ERL LQ + E + + +G++ +L+E K+ +L GR+ + V Sbjct: 354 DTPREVKLERLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L + IG +I V+I +L GELV+ Sbjct: 414 FPAPLTAHARLIGQMIDVKINHAYPHSLRGELVL 447 >gi|325133510|gb|EGC56173.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis M13399] Length = 442 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V D+AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ L++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ DGE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N VG + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G++V Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440 >gi|255020721|ref|ZP_05292781.1| tRNA-i(6)A37 methylthiotransferase [Acidithiobacillus caldus ATCC 51756] gi|254969837|gb|EET27339.1| tRNA-i(6)A37 methylthiotransferase [Acidithiobacillus caldus ATCC 51756] Length = 437 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/435 (46%), Positives = 285/435 (65%), Gaps = 13/435 (2%) Query: 36 MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS R+ ++ S G + V+ AD++VLNTC IREKA +KVY+ LG R K SR Sbjct: 1 MNEYDSERIGELLAASHGLQLVDDPARADVLVLNTCSIREKAEDKVYTQLGFWRPFKESR 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTD 153 ++++ V GCVA EGE + RR+P V++V GPQT +RL ++L+ R ++ VD Sbjct: 61 ----PEVIIAVGGCVASQEGESLRRRAPFVDIVFGPQTLHRLADMLDACRAQRQPQVDLR 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+RL G + G TAF+T+QEGCDKFCTFCVVP+TRG E SR + ++ E Sbjct: 117 FPELEKFDRLPQRPG----REGPTAFVTVQEGCDKFCTFCVVPHTRGREFSRPMPDILRE 172 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 R+L+D GV E+TLLGQNVNA+RG GL GE ++LL L+ I L+RLRYTTSHP + Sbjct: 173 VRQLVDQGVREVTLLGQNVNAYRGATGLIGEG-DLAELLERLARIPDLLRLRYTTSHPNN 231 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 + D LI AH D+ +L +LHLPVQSGSDRIL+ M+R+H+ Y I R+R+ R DI IS Sbjct: 232 LDDRLIAAHRDIPILAAHLHLPVQSGSDRILRRMHRKHSVASYLDKIARLRAARSDIRIS 291 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 SDFIVGFPGETD DF AT++L++ + + Q+FSFKYSPR TP + + V E VK ERL Sbjct: 292 SDFIVGFPGETDADFAATLELIEAVRFDQSFSFKYSPRPNTPALKLKDSVPEGVKDERLA 351 Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDII 451 LQ ++ ++++A VG + +VL+ ++ + G++ +SV + G ++ Sbjct: 352 ILQGRIHGLARAYSEALVGTVQDVLVTGPSRRDPCEWTGKTSCNRSVNFAGPANLSGQML 411 Query: 452 KVRITDVKISTLYGE 466 +RIT ++L GE Sbjct: 412 PIRITAALANSLRGE 426 >gi|15677701|ref|NP_274862.1| hypothetical protein NMB1866 [Neisseria meningitidis MC58] gi|304388407|ref|ZP_07370514.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis ATCC 13091] gi|81784211|sp|Q9JXV8|MIAB_NEIMB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|7227123|gb|AAF42200.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|304337588|gb|EFM03750.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis ATCC 13091] gi|316985478|gb|EFV64425.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis H44/76] gi|325139525|gb|EGC62065.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis CU385] gi|325143760|gb|EGC66077.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis M01-240013] gi|325200923|gb|ADY96378.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis H44/76] Length = 442 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V D+AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ L++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ DGE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N VG + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G++V Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKVV 440 >gi|169794647|ref|YP_001712440.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter baumannii AYE] gi|213157982|ref|YP_002320780.1| tRNA-i(6)A37 thiotransferase [Acinetobacter baumannii AB0057] gi|215482236|ref|YP_002324418.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii AB307-0294] gi|301345373|ref|ZP_07226114.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter baumannii AB056] gi|301511255|ref|ZP_07236492.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter baumannii AB058] gi|301595637|ref|ZP_07240645.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter baumannii AB059] gi|332855636|ref|ZP_08435979.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii 6013150] gi|332868551|ref|ZP_08438217.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii 6013113] gi|229890407|sp|B7GW55|MIAB_ACIB3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890408|sp|B7I9D5|MIAB_ACIB5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890411|sp|B0V6R4|MIAB_ACIBY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|169147574|emb|CAM85435.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter baumannii AYE] gi|213057142|gb|ACJ42044.1| tRNA-i(6)A37 thiotransferase [Acinetobacter baumannii AB0057] gi|213987152|gb|ACJ57451.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii AB307-0294] gi|332727351|gb|EGJ58787.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii 6013150] gi|332733321|gb|EGJ64514.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii 6013113] Length = 483 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/455 (43%), Positives = 297/455 (65%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GCQMN YDS RM D+ S GY N+ ++AD++++NTC IREKA EKV+S Sbjct: 31 KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTNNPNEADILLMNTCSIREKAQEKVFSE 90 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 LGR R LK ++ DL++ V GCVA EG+ I +R+P V+++ GPQT +RLP++L++ Sbjct: 91 LGRWRKLK----EQNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146 Query: 143 -ARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 A+ K ++VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 147 HAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EI+LLGQNVN +RG+ +G CTF +LL ++ Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI G+ RLRYTTSHP + SD LI+ + DL ++ +LHLPVQSGS+ +LK+M R HT Y Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLKAMKRNHTIDVY 321 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I ++R +RPD+ +SSDFI+GFPGETD++F T+ + + + ++SF YS R GTP Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 S++ + E+VK ERL +Q+ +++ + DA +G+I VLIEK ++ LVG + Sbjct: 382 SDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILVGTADN 441 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 + V +G ++ IT++K ++ +YGEL+ Sbjct: 442 TRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476 >gi|113866557|ref|YP_725046.1| 2-methylthioadenine synthetase [Ralstonia eutropha H16] gi|123134407|sp|Q0KE93|MIAB_RALEH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|113525333|emb|CAJ91678.1| 2-Methylthioadenine synthetase [Ralstonia eutropha H16] Length = 450 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/456 (44%), Positives = 290/456 (63%), Gaps = 20/456 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ FVK+YGCQMN YDS +M D+ SQG E +++++AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFVKTYGCQMNEYDSDKMVDVLNASQGLEPTDNVEEADVILFNTCSVREKAQEKVFSE 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR++ LK + DL++ V GCVA EG I+ R+P V+VV GPQT +RLP+L+ R Sbjct: 62 LGRMKALKAVK----PDLVIGVGGCVASQEGASIVSRAPYVDVVFGPQTLHRLPDLIARR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 118 QRTGQSQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L + GV E+TLLGQNVNA+RGK G E F+ L+ ++EI G+ Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYRGKMGDTTEIADFALLIEYVAEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP++ + L++ +G D L+ +LHLPVQ SDRIL +M R ++ EY+ II + Sbjct: 233 RIRYTTSHPKEFTSRLVELYGRCDKLVNHLHLPVQHASDRILMAMKRGYSVLEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R +RPD+++SSDFIVGFPGETD DF M ++++IGY +FSF +SPR GTP +N+ + Sbjct: 293 LRVLRPDMSMSSDFIVGFPGETDADFEKLMAMIEEIGYDTSFSFIFSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433 VK RL LQ + E + VG + +L+E K+ +L GR+ Sbjct: 353 TPHEVKLRRLQRLQATIEENVQRISQNMVGTVQRILVEGPARKDPTELHGRTENNRVVNF 412 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L V ++ +G ++ V IT +L GE+VV Sbjct: 413 ALPGVPQAGRDRLVGQLVDVSITQAFPHSLRGEIVV 448 >gi|21108720|gb|AAM37312.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 452 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/450 (44%), Positives = 288/450 (64%), Gaps = 17/450 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++K++GCQMN YDS +M D+ S+G E + ++AD++++NTC IREKA EKV+S L Sbjct: 5 KLYIKTHGCQMNEYDSAKMADVLAASEGLELTDDPEEADVVLVNTCSIREKAQEKVFSQL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143 GR + LK G +++ V GCVA EGE I++R+P V++V GPQT +RLPEL+ R Sbjct: 65 GRWKALKAG----GKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARR 120 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK VD + +KF+RL R G +AF++I EGC K+C+FCVVPYTRG E+ Sbjct: 121 ESGKSQVDISFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEV 175 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FSDL---LYSLSEIK 258 SR V+ E +L GV EI LLGQNVNA+RG ++DL + ++++I+ Sbjct: 176 SRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYADLGLLIRTIAQIE 235 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R+R+TTSHP + SD L+ A+ D+ L YLHLPVQ+GSDRIL +M R +TA E++ Sbjct: 236 GIGRIRFTTSHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEFKSK 295 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I ++R+VRPDI+ISSDFIVGFPGET+ DF TM L++ +G+ Q+FSF YS R GTP S++ Sbjct: 296 IRKLRAVRPDISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPGTPASDL 355 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437 + E VK RL LQ + S + + VG + VL+E ++ +L G+S ++ Sbjct: 356 QDDTPEAVKQARLARLQAHINAHAASISQSMVGSVQRVLVEGPSRRDPNELTGKSENMRP 415 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 V IG + V IT+ ++L G + Sbjct: 416 VNFPGNPRLIGQFVDVLITEAMSNSLRGRI 445 >gi|218767554|ref|YP_002342066.1| hypothetical protein NMA0590 [Neisseria meningitidis Z2491] gi|229890575|sp|A1IQ34|MIAB_NEIMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|121051562|emb|CAM07860.1| hypothetical protein NMA0590 [Neisseria meningitidis Z2491] Length = 442 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/448 (43%), Positives = 282/448 (62%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V D+AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK + L++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVRPLKEKK----PGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ DGE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N +G + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G++V Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440 >gi|59800506|ref|YP_207218.1| hypothetical protein NGO0037 [Neisseria gonorrhoeae FA 1090] gi|75356482|sp|Q5FAI1|MIAB_NEIG1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|59717401|gb|AAW88806.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] Length = 442 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V D+AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ L++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ DGE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N +G + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTVNNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G++V Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440 >gi|167561620|ref|ZP_02354536.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia oklahomensis EO147] gi|167568856|ref|ZP_02361730.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia oklahomensis C6786] Length = 457 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/454 (43%), Positives = 292/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ S+G E+ +S +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNASEGLEKTDSPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK ++ DLL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ Sbjct: 63 LGRVRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK--CTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGASDIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + L+ + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RP++++S+D IVGFPGET+ DF TM LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPNLSLSTDIIVGFPGETEADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLAD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 +K +RL LQ + E V + + VG++ +L+E K+ +L GR+ + V Sbjct: 354 DTPRELKLKRLQHLQATIEENVVRISRSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L S IG +I V+I +L GELV+ Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 447 >gi|319409818|emb|CBY90126.1| putative MiaB-like tRNA modification enzyme [Neisseria meningitidis WUE 2594] gi|325129521|gb|EGC52348.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis OX99.30304] gi|325135644|gb|EGC58261.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis M0579] gi|325141561|gb|EGC64027.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis 961-5945] gi|325197636|gb|ADY93092.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis G2136] gi|325206777|gb|ADZ02230.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis M04-240196] Length = 442 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V D+AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ L++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ DGE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N +G + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G++V Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKIV 440 >gi|157376603|ref|YP_001475203.1| 2-alkenal reductase [Shewanella sediminis HAW-EB3] gi|229890656|sp|A8FZ02|MIAB_SHESH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|157318977|gb|ABV38075.1| 2-alkenal reductase [Shewanella sediminis HAW-EB3] Length = 474 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/447 (43%), Positives = 283/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ +GY +AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLMDEYEGYTLTEEASEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EG+ I R+ V+++ GPQT +RLPE++++ Sbjct: 63 LGRWKKLK----EKNPDLIIGVGGCVASQEGKVIKERAQCVDLIFGPQTLHRLPEMIDQI 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK V+D + +KF++L R G +AF++I EGC K+C+FCVVPYTRG E Sbjct: 119 RDGGKAVIDISFPEIEKFDKLP-----EPRADGPSAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L ++ E +L D GV E+ LLGQNVNA+RG D E CTF++LL ++ I G+ R Sbjct: 174 VSRPLDDIILEIAQLADQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + + +I + D L+ +LHLPVQSGSDRIL M R H A EY+ II R+ Sbjct: 234 LRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTQMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGE+ DF TM L++ + + +FSF YS R GTP +++ + V Sbjct: 294 RKARPDIQISSDFIIGFPGESKQDFADTMKLIEDVQFDHSFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 K ERL LQ ++ +Q + ++ +G + +L+E K +L GR+ + V Sbjct: 354 TLAEKKERLAILQDRITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTETSRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG + V I DV ++L G V Sbjct: 414 ADPKHIGSFVDVEIVDVYTNSLRGTFV 440 >gi|307130060|ref|YP_003882076.1| isopentenyl-adenosine A37 tRNA methylthiolase [Dickeya dadantii 3937] gi|306527589|gb|ADM97519.1| isopentenyl-adenosine A37 tRNA methylthiolase [Dickeya dadantii 3937] Length = 474 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 288/448 (64%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS ++ D+ S GY+ ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKIADLLESTHGYQLTEVAEEADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ +L++ V GCVA EGE I R+ V+V+ GPQT +RLPE++ Sbjct: 63 LGRWKTLKDV----NPNLIIGVGGCVASQEGEHIRDRAHYVDVIFGPQTLHRLPEMINHV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R +VD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG Sbjct: 119 Q-GTRSPIVDISFPEVEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR + V+ E +L GV E+ LLGQNVNA+RG + + C+F++LL ++ I G+ Sbjct: 173 EVSRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATHNDDICSFAELLRLVATIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP + +D +I + D L+ +LHLPVQSGSDR+L M RRHTA EY+ II + Sbjct: 233 RIRFITSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RP I ISSDFIVGFPGET +DF TM L+ + + +FSF YSPR GTP ++M++ Sbjct: 293 LRNARPAIQISSDFIVGFPGETQEDFEQTMKLIADVDFDMSFSFIYSPRPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q + ++ +G + +L+E ++ +L GR+ + V Sbjct: 353 VTEAEKKQRLYILQERINQQAMQYSRRMMGSVQRILVEGTSRKSVMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G +V Sbjct: 413 EGTPDMIGKFVDVEIVDVYPNSLRGVVV 440 >gi|126175461|ref|YP_001051610.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella baltica OS155] gi|229890648|sp|A3D7M8|MIAB_SHEB5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|125998666|gb|ABN62741.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS155] Length = 474 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/447 (43%), Positives = 284/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ QGY +AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEASEADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +L++ V GCVA EG+ I R+ V+++ GPQT +RLPE++E+ Sbjct: 63 LGRWKTLKD----KNPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIEQV 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G K V+D + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 RRGEKAVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L + GV E+ LLGQNVNA+RG DG CTF++LL ++ I G+ R Sbjct: 174 VSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGAICTFAELLRFVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + + +I + D L+ +LHLPVQSGSDRIL +M R H A EY+ II R+ Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R R I ISSDFI+GFPGET +DF T+ L++ IG+ +FSF YS R GTP +++ + V Sbjct: 294 RKAREGIQISSDFIIGFPGETKEDFADTIKLIEDIGFDHSFSFIYSARPGTPAADLPDNV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 D K +RL LQ ++ +Q + ++ +G + +L+E K +L GR+ + V Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG + V I DV ++L G + Sbjct: 414 GQPKHIGTFVDVEIVDVYTNSLRGVFI 440 >gi|328472484|gb|EGF43347.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio parahaemolyticus 10329] Length = 474 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 289/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRERAPYVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QTDDAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DGE C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGETD DF+ TM L+ + + +FSF +SPR GTP ++ + Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDI 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E VK ERL LQ+ + Q + ++ +G VL+E K+ +L R+ + V Sbjct: 354 PEQVKKERLYELQQTINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GELV Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGELV 440 >gi|120555649|ref|YP_960000.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter aquaeolei VT8] gi|229890561|sp|A1U494|MIAB_MARAV RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|120325498|gb|ABM19813.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter aquaeolei VT8] Length = 448 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 197/449 (43%), Positives = 289/449 (64%), Gaps = 19/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS RM D+ + + E ++ DDAD+++LNTC IREKA EKV+ Sbjct: 3 KKLYIKTHGCQMNEYDSARMADLLKTGEAVEVTDNADDADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR ++LK + DL++ V GCVA EG+ I+ R+P V++V GPQT +RLP+++ Sbjct: 63 LGRWKSLKTKK----PDLIIGVGGCVASQEGQAIIDRAPYVDMVFGPQTLHRLPDMITEV 118 Query: 144 RF---GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R G VVD + +KF+ L + G + G +AF++I EGC K+CTFCVVPYTRG Sbjct: 119 RTKGNGVGVVDVSFPEIEKFDNLP--EPGAD---GPSAFVSIMEGCSKYCTFCVVPYTRG 173 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E+SR + V+ E L GV E+ LLGQNVNA+RG+ DG++ ++L+ ++ I G+ Sbjct: 174 EEVSRPVDDVIAEVAHLAAQGVREVNLLGQNVNAYRGETHDGDQMDLAELIEVIATIDGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP + SD LI+ + + L+ +LHLPVQSGSDRIL +M R HTA EY+ + Sbjct: 234 DRIRYTTSHPVEFSDALIEVYERVPELVSHLHLPVQSGSDRILAAMKRGHTALEYKSKLR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R +RPDI+ SSDFI+GFPGETD DF TM L++ IG+ +FSF YS R GTP S++ + Sbjct: 294 RLRKIRPDISFSSDFIIGFPGETDKDFEDTMKLINDIGFDMSFSFIYSARPGTPASDLPD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439 VK +RL LQ +L + + + VG +L+ K+ G+ GR+ + + Sbjct: 354 DTPMEVKKQRLSILQDRLNQNVMDISRKMVGSTQRILVTGLSKKDPGEYAGRTE--NNRI 411 Query: 440 LNSKNHN---IGDIIKVRITDVKISTLYG 465 +N ++ N +G I V I + ++L G Sbjct: 412 VNFRHENPEVVGHFIDVEIVEAYPNSLRG 440 >gi|331014759|gb|EGH94815.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 442 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 282/448 (62%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + ++++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L ++GV E+TLLGQNVN +R DG +DL+ +++ + G+ R Sbjct: 174 VSRPFDDVLTEVTHLAEHGVREVTLLGQNVNGYRCTTHDGRVADLADLIRAVAVVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH D+ L+ +LHLPVQSGSDRIL +M R HT EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHADVPELVKHLHLPVQSGSDRILAAMKRNHTTLEYKSRLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I+ISSDFIVGFPGET+ DF TM L++ G+ +FSF YSPR GTP +++ + Sbjct: 294 RAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDAGFDFSFSFIYSPRPGTPAADLKDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG I +L+ + K+ G+L GR+ + V Sbjct: 354 PEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I D + +L G L+ Sbjct: 414 CDNPRLIGQFADVHIDDAQPHSLRGSLL 441 >gi|295096597|emb|CBK85687.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 474 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 193/448 (43%), Positives = 289/448 (64%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + +AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDTTHGYQLTENAKEADVLLLNTCSIREKAQEKVFHV 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EG+ I +R+P V++V GPQT +RLPE++ + Sbjct: 63 LGRWKLLK----RKNPDLIIGVGGCVASQEGKLIRQRAPYVDIVFGPQTLHRLPEMINQV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GSRSPVVDVSFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F++LL ++ I G+ Sbjct: 173 EVSRPADDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFAELLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I + D L+ +LHLP+Q GSDR+L M R HT EY+ I + Sbjct: 233 RIRFTTSHPMEFTDDIIDVYRDTPELVSFLHLPIQCGSDRVLNLMGRPHTVLEYKSTIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPDI ISSDFIVGFPGET DDF TM L+ ++ + ++SF +S R GTP ++M++ Sbjct: 293 LREARPDIQISSDFIVGFPGETADDFERTMKLIGEVNFDVSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q +++ +G + +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQANAWSRRMLGTVQRILVEGTSRKSVMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I +V ++L G++V Sbjct: 413 EGTPDMIGKFVDVEIVEVLTNSLRGKVV 440 >gi|254804310|ref|YP_003082531.1| putative 2-methylthioadenine synthetase [Neisseria meningitidis alpha14] gi|254667852|emb|CBA03889.1| putative 2-methylthioadenine synthetase [Neisseria meningitidis alpha14] gi|325131508|gb|EGC54215.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis M6190] gi|325139238|gb|EGC61784.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis ES14902] Length = 442 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V D+AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ L++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ DGE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N +G + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G++V Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKVV 440 >gi|154706007|ref|YP_001424838.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Coxiella burnetii Dugway 5J108-111] gi|229890504|sp|A9KCP2|MIAB_COXBN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|154355293|gb|ABS76755.1| tRNA 2-methylthioadenosine synthase [Coxiella burnetii Dugway 5J108-111] Length = 439 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 197/446 (44%), Positives = 281/446 (63%), Gaps = 12/446 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ FS G E AD+ +LNTC +REKA KV+S Sbjct: 2 KKLYLKTHGCQMNEYDSAKMADVLKFSHGLELTEDPAVADVFLLNTCSVREKAQTKVFSE 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R K R +++ V GCVA EGE IL+++P V++V GPQT +RLP+LL+ Sbjct: 62 LGRWRPFKEKR----PHVVIGVGGCVASQEGETILKQAPFVDIVFGPQTLHRLPDLLDSV 117 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K VVD + +KF+RL R G +AF++I EGC K+CTFCVVPYTRG E Sbjct: 118 IQKRKSVVDITFPEIEKFDRLP-----QPRAEGPSAFVSIMEGCSKYCTFCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR V+ E L + GV EITLLGQNVN + G DG+ + L++ L+ + + R Sbjct: 173 ISRPFDDVIAEVASLCEQGVREITLLGQNVNDYCGLMHDGQVADLALLIHYLAAMDNIER 232 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP S+ LI A+ + L +LHLPVQSGSDRIL +M R +T EY+ I ++ Sbjct: 233 IRFTTSHPSAFSENLIDAYAEEPKLANHLHLPVQSGSDRILAAMKRNYTVLEYKSKIRKL 292 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+VRPDI++SSDFI+GFPGETD DF ATM+L+ +G+ +FSF YSPR GTP + + + V Sbjct: 293 RAVRPDISLSSDFIIGFPGETDADFEATMNLIHDMGFDHSFSFIYSPRPGTPAAQLPDDV 352 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441 VK ERL LQ ++ + + + VG +L+ K+ +L GR+ + V N Sbjct: 353 PMAVKKERLAILQNRINVKAAEISQSMVGTQQRILVTGPSKKYPDQLSGRTENNRVVNFN 412 Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467 IG ++ ++I + + +L+GE+ Sbjct: 413 GDTPLIGQMVTIKIKEARPYSLWGEI 438 >gi|217972293|ref|YP_002357044.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella baltica OS223] gi|217497428|gb|ACK45621.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella baltica OS223] Length = 474 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/447 (43%), Positives = 283/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ QGY +AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEASEADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +L++ V GCVA EG+ I R+ V+++ GPQT +RLPE++E+ Sbjct: 63 LGRWKTLKD----KNPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIEQV 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G K V+D + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 RRGDKAVIDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L + GV E+ LLGQNVNA+RG DG CTF++LL ++ I G+ R Sbjct: 174 VSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDGAICTFAELLRFVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + + +I + D L+ +LHLPVQSGSDRIL +M R H A EY+ II R+ Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R R I ISSDFI+GFPGET +DF TM L++ IG+ +FSF YS R GTP +++ + V Sbjct: 294 RKAREGIQISSDFIIGFPGETKEDFADTMKLIEDIGFDHSFSFIYSARPGTPAADLPDNV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 D K +RL LQ ++ +Q + ++ +G + +L+E K +L GR+ + V Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +IG + V I DV ++L G + Sbjct: 414 GLPKHIGTFVDVEIVDVYTNSLRGVFI 440 >gi|121634220|ref|YP_974465.1| hypothetical protein NMC0353 [Neisseria meningitidis FAM18] gi|229890576|sp|A1KS33|MIAB_NEIMF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|120865926|emb|CAM09663.1| hypothetical protein NMC0353 [Neisseria meningitidis FAM18] gi|254672658|emb|CBA06484.1| conserved hypothetical protein [Neisseria meningitidis alpha275] gi|261393205|emb|CAX50824.1| putative MiaB-like tRNA modification enzyme [Neisseria meningitidis 8013] gi|308389965|gb|ADO32285.1| hypothetical protein NMBB_2129 [Neisseria meningitidis alpha710] gi|325204821|gb|ADZ00275.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis M01-240355] Length = 442 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V D+AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ L++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ DGE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N +G + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G++V Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKVV 440 >gi|221211289|ref|ZP_03584268.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans CGD1] gi|221168650|gb|EEE01118.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia multivorans CGD1] Length = 457 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/454 (43%), Positives = 291/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ +S +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDSPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK ++ DLL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ Sbjct: 63 LGRVRELKEAK----PDLLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G TAF++I EGC K+C++CVVPYTRG E Sbjct: 119 RTSGRAQVDITFPEIEKFDHLPPA-----RVEGPTAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSSEVADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMVMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGET++DF M LV + Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDLIVGFPGETEEDFDKMMALVHDMRYDTSFSFIYSPRPGTPAANLHD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 +VK +RL +Q + E + + VG++ +L+E K+ +L GR+ + V Sbjct: 354 DTPRDVKLKRLQLVQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L + IG +I V+I +L GELV+ Sbjct: 414 FPAPLAAHPRLIGQMIDVKINHAYPHSLRGELVL 447 >gi|304395674|ref|ZP_07377557.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pantoea sp. aB] gi|304356968|gb|EFM21332.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pantoea sp. aB] Length = 461 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/436 (45%), Positives = 278/436 (63%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ + GY ++AD+++LNTC IREKA EKV+ LGR R LK Sbjct: 1 MNEYDSSKMSDLLNTTHGYTLTEVPEEADILLLNTCSIREKAQEKVFHLLGRWRKLK--- 57 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153 + D+++ V GCVA EG+ I +R+P V++V GPQT +RLPE++ R K VVD Sbjct: 58 -ERNPDVIIGVGGCVASQEGDHIRQRAPCVDIVFGPQTLHRLPEMINTVRGTKSPVVDIS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E+SR ++ E Sbjct: 117 FPEIEKFDRLP-----DPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSDDILLE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L GV E+ LLGQNVNA+RG DGE CTF++LL ++ I G+ R+R+TTSHP + Sbjct: 172 IAQLAAQGVREVNLLGQNVNAYRGATFDGEICTFAELLRLVAAIDGIDRIRFTTSHPIEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++R+ RPDI ISS Sbjct: 232 TDDIIEVYRDTPELVSFLHLPVQSGSDRILTLMKRAHTALEYKAIIRKLRAARPDIEISS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFI+GFPGET DF TM L+ +I + +FSF YS R GTP +++ + V E K +RL Sbjct: 292 DFIIGFPGETQQDFEQTMKLIAEINFDVSFSFVYSARPGTPAADLPDDVSEEEKKQRLWI 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ ++ +Q + + VG + +L+E ++ ++ GR+ + V IG + Sbjct: 352 LQDRINQQAQAISRRMVGTVQRILVEGISRKNVMEVSGRTENNRVVNFEGSPEMIGRFVD 411 Query: 453 VRITDVKISTLYGELV 468 V I DV ++L G+LV Sbjct: 412 VEIVDVYTNSLRGKLV 427 >gi|157962954|ref|YP_001502988.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella pealeana ATCC 700345] gi|229890653|sp|A8H7B6|MIAB_SHEPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|157847954|gb|ABV88453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella pealeana ATCC 700345] Length = 475 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 197/447 (44%), Positives = 288/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ +GY ++ ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDEYEGYTLTDNAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ K+ G L++ V GCVA EG+ I R+ V+++ GPQT +RLPE++++ Sbjct: 63 LGRWKTLKD---KKPG-LIIGVGGCVASQEGKAIKERAQCVDLIFGPQTLHRLPEMIDQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + GK+ V+D + +KF+RL R G +AF++I EGC K+C+FCVVPYTRG E Sbjct: 119 KDGKKAVIDVSFPEVEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L + GV E+ LLGQNVNA+RG D E CTF++LL ++ I G+ R Sbjct: 174 VSRPLDDVILEIAQLAEQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + + +I + D L+ +LHLPVQSGSD IL M R H A EY+ II R+ Sbjct: 234 LRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDLILTQMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGE+ DF TM L++ I + +FSF YS R GTP +++ + V Sbjct: 294 RKARPDILISSDFIIGFPGESKQDFADTMKLIEDIQFDHSFSFIYSARPGTPAADLPDNV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 + K ERL LQ ++ +Q + ++ VG + +L+E K +L GR+ + V Sbjct: 354 SLDEKKERLAILQDRITQQAMRYSRQMVGTVQRILVEGPSVKNPMELRGRTENSRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG + V I DV ++L G + Sbjct: 414 GLHEHIGKFVDVEIVDVYTNSLRGVFI 440 >gi|94309398|ref|YP_582608.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cupriavidus metallidurans CH34] gi|123384028|sp|Q1LR87|MIAB_RALME RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|93353250|gb|ABF07339.1| isopentenyl-adenosine A37 tRNA methylthiolase [Cupriavidus metallidurans CH34] Length = 450 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/456 (44%), Positives = 288/456 (63%), Gaps = 20/456 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ FVK+YGCQMN YDS +M D+ +QG E ++++DAD+I+ NTC IREKA EKV+S Sbjct: 2 KKVFVKTYGCQMNEYDSDKMVDVLNATQGMEPTDNVEDADVILFNTCSIREKAQEKVFSE 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 LGR++ LK ++ DL++ V GCVA EG I+ R+P V+VV GPQT +RLP+L+ R Sbjct: 62 LGRMKALKAAK----PDLVIGVGGCVASQEGASIVSRAPYVDVVFGPQTLHRLPDLINRR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 118 QQTGLSQVDISFPEIEKFDHLPPA-----RVDGPSAFVSIMEGCSKYCSYCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L + GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 173 VSRPFEDVLAEVAGLAEQGVREVTLLGQNVNAYRGAMGGTSEIADFALLIEYVADIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP++ + LI+ +G D L+ +LHLPVQ SDR+L M R ++ EY+ II R Sbjct: 233 RIRYTTSHPKEFTSRLIELYGRCDKLVNHLHLPVQHASDRVLAGMKRGYSVLEYKSIIRR 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+++SSDFIVGFPGETD DF M +V +IGY +FSF +SPR GTP +N+ + Sbjct: 293 LRALRPDMSMSSDFIVGFPGETDADFDKLMAMVHEIGYDTSFSFIFSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP------- 433 VK RL LQ + E + + VG + +L+E K+ +L GR+ Sbjct: 353 TPHEVKLRRLQLLQATIEENVQRISQSMVGTVQRILVEGPARKDPTELHGRTENNRVVNF 412 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L V ++ IG ++ V +T +L GE VV Sbjct: 413 ALPGVPQAQRDRMIGQMVDVNVTQAFPHSLRGEFVV 448 >gi|167579900|ref|ZP_02372774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia thailandensis TXDOH] Length = 457 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/454 (43%), Positives = 292/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+R LK ++ DLL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ R Sbjct: 63 LGRVRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGAHEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + L+ + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSLIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RP++++S+D IVGFPGET+ DF TM LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPNLSLSTDIIVGFPGETEADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLAD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 VK ERL LQ + E + + +G++ +L+E K+ +L GR+ + V Sbjct: 354 DTPREVKLERLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L + IG +I V+I +L GELV+ Sbjct: 414 FPAPLAAHARLIGQMIDVKINHAYPHSLRGELVL 447 >gi|261379974|ref|ZP_05984547.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria subflava NJ9703] gi|284797173|gb|EFC52520.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria subflava NJ9703] Length = 440 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/448 (43%), Positives = 284/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V DDAD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSEKMLSVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ ++++ VAGCVA EGE I++R+P V+VV GPQT +RLP+L+ + Sbjct: 62 DLGRVRPLK----EKNPNVIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLPKLIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G +D + +KF+ L R G +AF++I EGC K+C++CVVPYTRG Sbjct: 118 KETTGLSQIDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ +GE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N VG + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G+ V Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLKGKPV 440 >gi|269961561|ref|ZP_06175923.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833602|gb|EEZ87699.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 474 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 201/447 (44%), Positives = 290/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I +R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QSDEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L D GV E+ LLGQNVNA+RG DGE C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDR+L M R HT EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRVLTMMKRPHTGIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGETD DF+ TM L+ + + +FSF +SPR GTP ++ + Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E VK ERL LQ+ + Q + ++ +G VL+E K+ +L R+ + V Sbjct: 354 SEQVKKERLYELQQTVNAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GELV Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGELV 440 >gi|261341274|ref|ZP_05969132.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enterobacter cancerogenus ATCC 35316] gi|288316579|gb|EFC55517.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enterobacter cancerogenus ATCC 35316] Length = 474 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 193/448 (43%), Positives = 288/448 (64%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + +AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDTTHGYQLTENPKEADVLLLNTCSIREKAQEKVFHV 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EG+ I +R+P V++V GPQT +RLPE++ + Sbjct: 63 LGRWKLLK----RKNPDLIIGVGGCVASQEGKLIRQRAPYVDIVFGPQTLHRLPEMINQV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GNRSPVVDVSFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG +F++LL ++ I G+ Sbjct: 173 EVSRPADDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFAELLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I + D L+ +LHLP+Q GSDR+L M R HT EY+ I + Sbjct: 233 RIRFTTSHPMEFTDDIIDVYRDTPELVSFLHLPIQCGSDRVLNLMGRPHTVLEYKSTIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPDI ISSDFIVGFPGET DDF TM L+ ++ + ++SF +S R GTP ++M++ Sbjct: 293 LREARPDIQISSDFIVGFPGETADDFERTMKLIGEVNFDVSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ+++ +Q +++ +G + +L+E ++ +L GR+ + V Sbjct: 353 VPEEEKKQRLYILQERINQQANAWSRRMLGTVQRILVEGTSRKSIMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L ++V Sbjct: 413 EGTPDMIGKFVDVEIVDVLTNSLRAKVV 440 >gi|325201495|gb|ADY96949.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis M01-240149] gi|325207475|gb|ADZ02927.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Neisseria meningitidis NZ-05/33] Length = 442 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/448 (43%), Positives = 282/448 (62%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V D+AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ L++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ DGE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N +G + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G+ V Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKTV 440 >gi|237746577|ref|ZP_04577057.1| tRNA modifying enzyme [Oxalobacter formigenes HOxBLS] gi|229377928|gb|EEO28019.1| tRNA modifying enzyme [Oxalobacter formigenes HOxBLS] Length = 448 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/450 (43%), Positives = 288/450 (64%), Gaps = 15/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ ++ Y R ++ ++ADLI+LNTC +REKA EKV+S Sbjct: 3 KKVFIKTFGCQMNEYDSGKMADLLEAEANYLRTDNPEEADLILLNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 LGR R L+ +R L++ V+GCVA EGE +++R+P VN+V GPQT +RLP+++ Sbjct: 63 LGRFRKLRKNR----AGLIIGVSGCVASQEGEALIKRAPYVNLVFGPQTLHRLPDMIRAF 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G+ +DT + +KF+ L R A +T+ EGC K+C++C+VPYTRG E Sbjct: 119 EKTGEPQIDTSFPEIEKFDYLPPA-----RVDAPVACVTVMEGCSKYCSYCIVPYTRGAE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E +L GV EITLLGQNVNA+RG+ GE F+ L+ +++EI G+ R Sbjct: 174 VSRRFGDVLVEVAELAGQGVKEITLLGQNVNAYRGEIEGGETADFAMLIETIAEIPGIER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHPR+ + LI + + L+ +L+LP Q GSDRIL +M R +TA EY+ II R+ Sbjct: 234 IRFVTSHPREFTQRLIDVYARVPQLVSHLYLPAQHGSDRILAAMKRGYTALEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 +++RPD+ +SSDFIVGFPGETD DF A M L+D+IG+ +FSF YSPR GTP + + + Sbjct: 294 KAIRPDLLVSSDFIVGFPGETDADFDAMMKLIDEIGFDNSFSFLYSPRPGTPAAALPMDI 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPWLQSV 438 +V+ ERL LQ+K+ +N VG + +VLIE K+ ++ G + + Sbjct: 354 PLSVRKERLQRLQEKIDSHTRHYNRLMVGSVQQVLIEAISHKNDRQVQGKTGNNRVVHIP 413 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V IG + VRIT+ +L GE Sbjct: 414 VEGDPKALIGQMRDVRITEAANFSLRGEFA 443 >gi|187477340|ref|YP_785364.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella avium 197N] gi|123765978|sp|Q2KWE0|MIAB_BORA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|115421926|emb|CAJ48446.1| putative nucleic acid binding protein [Bordetella avium 197N] Length = 475 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 194/448 (43%), Positives = 295/448 (65%), Gaps = 15/448 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++++GCQMN YDS +M D+ QG E ++ ++AD+I+ NTC +REKA EKV+S L Sbjct: 28 KIYIRTFGCQMNEYDSDKMVDVLREDQGLEMTDNPEEADVILFNTCSVREKAQEKVFSDL 87 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+++LK K +L++ V GCVA EG I++R+P V+VV GPQT +RLPEL+ R R Sbjct: 88 GRVQHLK----KLNPNLVIGVGGCVASQEGAAIVKRAPYVDVVFGPQTLHRLPELIRRRR 143 Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G VD + +KF+ + +R G TAF++I EGC K+C+FCVVPYTRG E+ Sbjct: 144 DEGVSQVDISFPEIEKFDNMPP-----SRVEGATAFVSIMEGCSKYCSFCVVPYTRGEEV 198 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGLV 261 SR V+ E L D GV E+TLLGQNVNA+RG+ G D E F+ LL + EI G+ Sbjct: 199 SRPFEDVLTEVADLADQGVREVTLLGQNVNAYRGRIEGSD-EIADFAMLLEYVHEIPGIE 257 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP++M+ +++A+ L L+ +LHLPVQ+GSDR+L +M R +TA E++ ++ + Sbjct: 258 RIRYTTSHPKEMTQRMVEAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRK 317 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RP++ +SSDFIVGFPGET++DF+ TM L+ +G+ +FSF YS R GTP +++ + Sbjct: 318 LRAARPNLTLSSDFIVGFPGETEEDFQKTMKLIADVGFDTSFSFVYSRRPGTPAADLQDD 377 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440 ++VK +RL LQ + EQ + + VG +L+E ++ +L+GR+ + V Sbjct: 378 TPQDVKLKRLQQLQALINEQAAAIAQSMVGTRQRLLVEGPSRRDPNELMGRTENNRIVNF 437 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG+++ V IT ++L G + Sbjct: 438 EGPSRLIGNMVDVIITHAFTNSLRGRVA 465 >gi|270159532|ref|ZP_06188188.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Legionella longbeachae D-4968] gi|269987871|gb|EEZ94126.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Legionella longbeachae D-4968] Length = 434 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 200/437 (45%), Positives = 279/437 (63%), Gaps = 12/437 (2%) Query: 36 MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ S G + + ++DAD+I+LNTC IREKA EKV+S LG+ R K Sbjct: 1 MNEYDSSKMADVLLQSHGLVKTDQVEDADVILLNTCSIREKAQEKVFSQLGQWREYK--- 57 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTD 153 + +++ V GCVA EG +I++R+P V++V GPQT +RLPELL ER K VVD Sbjct: 58 -AKNPHVVIGVGGCVASQEGADIIKRAPFVDLVFGPQTLHRLPELLNERMEKKKPVVDIS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+ L R G TAF++I EGC K+C+FCVVPYTRG EISR V+ E Sbjct: 117 FPEIEKFDHLPA-----PRAEGPTAFVSIMEGCSKYCSFCVVPYTRGTEISRPFDDVLAE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L GV EI LLGQNVN +RG +G+ + L++ L+ I+G+ R+R+TTSHP Sbjct: 172 CYQLATQGVREINLLGQNVNDYRGTMENGDIADLALLIHYLAAIEGIDRIRFTTSHPLAF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 SD LI A+ ++ L +LHLPVQSGSDRIL M R +TA E++ I ++R +RPDI +S+ Sbjct: 232 SDNLINAYAEVPELANHLHLPVQSGSDRILGLMKRGYTALEFKSKIRKLRKIRPDIRLST 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 D IVGFPGETD DF+ TMDLV +IG+ +FSF YSPR GTP +N+ + VK +RL Sbjct: 292 DIIVGFPGETDKDFQDTMDLVHEIGFDTSFSFIYSPRPGTPAANLPDDTPLEVKKQRLQI 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ +L Q ++ + VG I ++L+ H K+ +L GR+ + V + H IG + Sbjct: 352 LQNRLLLQASRYSQSMVGTIQKILVTGHSKKNSQQLSGRTECNRVVNFDGPAHLIGQFVD 411 Query: 453 VRITDVKISTLYGELVV 469 +I+D ++L G L+ Sbjct: 412 TQISDALPNSLRGRLIA 428 >gi|300715843|ref|YP_003740646.1| tRNA-thiotransferase [Erwinia billingiae Eb661] gi|299061679|emb|CAX58795.1| tRNA-thiotransferase [Erwinia billingiae Eb661] Length = 474 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 192/448 (42%), Positives = 289/448 (64%), Gaps = 12/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNSTHGYTLTEVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EG+ I +R+P V++V GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLVIGVGGCVASQEGDLIRQRAPCVDIVFGPQTLHRLPEMINTV 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K VVD + +KF+RL R G +AF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 KGTKSPVVDISFPEIEKFDRLP-----EPRADGPSAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L GV E+ LLGQNVNA+RG+ DG+ C+F+DLL ++ I G+ R Sbjct: 174 VSRPSDDILFEIAQLASQGVREVNLLGQNVNAYRGETFDGDICSFADLLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ I ++ Sbjct: 234 IRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTLMKRSHTALEYKSTIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + RP + +SSDFI+GFPGET DF TM L+ +I + +FSF YS R GTP +++ + V Sbjct: 294 LAARPAMQMSSDFIIGFPGETQQDFEQTMKLIGEINFDTSFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 + K ERL LQ+++ +Q ++++ + +G + +L+E+ + +L GR+ + V Sbjct: 354 SDEEKKERLWLLQQRINQQVMNWSRSKLGTVQRILVERLSRRNVMELAGRTECNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469 IG + V I +V +++ G +V+ Sbjct: 414 GTPEMIGKFVDVEIVEVHTNSMRGVVVL 441 >gi|119477442|ref|ZP_01617633.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma proteobacterium HTCC2143] gi|119449368|gb|EAW30607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine gamma proteobacterium HTCC2143] Length = 465 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 200/448 (44%), Positives = 293/448 (65%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS R++D+ S G E ++ D+AD+++LNTC IREKA EKV+ Sbjct: 27 KKLYIKTHGCQMNEYDSDRLQDLLGTSHGLETTDNPDEADVLLLNTCSIREKAQEKVFHQ 86 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + DL++ V GCVA EG+ I +R+P V+VV GPQT +R+PE++ + Sbjct: 87 LGRWRQLKEAN----PDLIIGVGGCVASQEGDAIGKRAPFVDVVFGPQTLHRVPEMINAS 142 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G +VD + +KF+ L G +AF++I EGC K+CTFCVVPYTRG E Sbjct: 143 KPDGPVLVDVTFPEIEKFDALP-----EPSSDGPSAFVSIMEGCSKYCTFCVVPYTRGEE 197 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L GV E+ LLGQNVNA+RG+ + E F++LL+ ++ + G+ R Sbjct: 198 VSRPFDDVIAEIAHLTSQGVKEVNLLGQNVNAYRGENHEAEIVEFAELLHFVAAVPGIER 257 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+A+ D+ L+ +LHLPVQSGSDRIL +M R HT EY + + R+ Sbjct: 258 IRYTTSHPVEFSDALIEAYADIPELVSHLHLPVQSGSDRILAAMKRGHTRAEYIEKMSRL 317 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + +RPDI+ SSDFI+GFPGET+ DF+ TM L+ +IG+ +FSF YS R GTP + + ++ Sbjct: 318 KDIRPDISFSSDFIIGFPGETEQDFQDTMALITEIGFDTSFSFIYSARPGTPAAELDDET 377 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441 E VK +RL LQ+++ +Q + VG ++LI K++ +L GR+ + V Sbjct: 378 PETVKKQRLKLLQQQINQQAQLISRQMVGNTEKILITGVSRKDEKELQGRTENNRVVNFP 437 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 S N + IG V IT+ ++L G+LV Sbjct: 438 STNQSLIGSFSFVTITEALPNSLRGQLV 465 >gi|262172028|ref|ZP_06039706.1| tRNA-i(6)A37 methylthiotransferase [Vibrio mimicus MB-451] gi|262402694|ref|ZP_06079255.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. RC586] gi|261893104|gb|EEY39090.1| tRNA-i(6)A37 methylthiotransferase [Vibrio mimicus MB-451] gi|262351476|gb|EEZ00609.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. RC586] Length = 474 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 201/447 (44%), Positives = 291/447 (65%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QISEAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DGE C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGEICSFAELLRLVATIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGETD DF+ TM L+ + + +FSF +SPR GTP ++ + Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E VK ERL LQ+++ Q + ++ +G +L+E K+ +L GR+ + V Sbjct: 354 SEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+I DV ++L GELV Sbjct: 414 GSPELIGQFVDVKIVDVFANSLRGELV 440 >gi|119944308|ref|YP_941988.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychromonas ingrahamii 37] gi|229890620|sp|A1SSC4|MIAB_PSYIN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|119862912|gb|ABM02389.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychromonas ingrahamii 37] Length = 473 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 194/446 (43%), Positives = 284/446 (63%), Gaps = 12/446 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + VK++GCQMN YDS +M D+ S GY V +DAD+++LNTC IREKA EKV+ L Sbjct: 4 KLHVKTWGCQMNEYDSSKMADLLNSTNGYISVEHAEDADVVLLNTCSIREKAQEKVFHQL 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + LK ++ +L++ V GCVA EG+ I R+P V++V GPQT +RLPE+++ + Sbjct: 64 GRWKKLKVNK----PNLVIGVGGCVASQEGKAIRSRAPFVDIVFGPQTLHRLPEMIKEVQ 119 Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K VVD + +KF+ L + G TAF++I EGC K+C+FCVVPYTRG E+ Sbjct: 120 ENKGTVVDVSFPEIEKFDSLP-----EPKADGATAFVSIMEGCSKYCSFCVVPYTRGEEV 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR L V+ E +L + GV E+TLLGQNVN++ G DG+ C+F++LL ++ I G+ RL Sbjct: 175 SRPLDDVLLEVAQLAEQGVREVTLLGQNVNSYLGATYDGDTCSFAELLRFVASIDGIDRL 234 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY TS+P D SD +I + D L+ +LHLPVQ+GSDRIL +M R HT +Y+ I R+ Sbjct: 235 RYVTSNPIDFSDEIIAVYEDTPELVNFLHLPVQAGSDRILAAMKRGHTVAQYKDQIARLL 294 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 VRP++ +SSDFI+GFP ETD DF TMDL+ I + ++SF YS R GTP ++M + V Sbjct: 295 QVRPELTVSSDFIIGFPNETDHDFEQTMDLIKYINFDTSYSFIYSQRPGTPAADMPDDVT 354 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442 K +RL LQ ++++Q VG + +L+E ++ +L GR+ + V Sbjct: 355 LETKKQRLAILQDRIQQQSQGIGRKMVGSVQRILVEGPSRKNIMELCGRTENNRIVNFEG 414 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 + +IG + V IT+V +++ G+ + Sbjct: 415 DHRSIGGFVDVEITEVHTNSIRGKFI 440 >gi|262394980|ref|YP_003286834.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. Ex25] gi|262338574|gb|ACY52369.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. Ex25] Length = 474 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 288/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRERAPYVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QSDDAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DGE C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGEICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGETD DF+ TM L+ + + +FSF +SPR GTP ++ V Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E VK ERL LQ+ + Q + ++ +G VL+E K+ +L R+ + V Sbjct: 354 SEQVKKERLYELQQTINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+I DV ++L GELV Sbjct: 414 GSADLIGQFVDVKIVDVFANSLRGELV 440 >gi|254787739|ref|YP_003075168.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Teredinibacter turnerae T7901] gi|237686553|gb|ACR13817.1| isopentenyl-adenosine A37 tRNA methylthiotransferase [Teredinibacter turnerae T7901] Length = 451 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 192/414 (46%), Positives = 273/414 (65%), Gaps = 13/414 (3%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 I ++ F++++GCQMN YDS RM+D+ S ++ D+AD++++NTC IREKA +K+ Sbjct: 5 ITTKKLFIQTHGCQMNEYDSARMQDLLGASHQMVPTDNPDEADVLLVNTCSIREKAQDKL 64 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 + LGR ++LK ++ +L++ V GCVA EGE I +R+P V+++ GPQT +RLPE++ Sbjct: 65 FHQLGRWKHLK----EKNPELIIGVGGCVASQEGENIAKRAPFVDLIFGPQTLHRLPEMI 120 Query: 141 ERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 E R G VVD + +KF+RL + G TAF+++ EGC K+CTFCVVPYTR Sbjct: 121 ETPRENGAVVVDISFPEIEKFDRLPEPEAD-----GATAFVSVMEGCSKYCTFCVVPYTR 175 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E+SR V+ E L GV EI LLGQNVNA+RG G DG ++L+ +++I G Sbjct: 176 GEEVSRPARDVLKECAHLAGQGVREINLLGQNVNAYRGDGPDG-VVDLAELITLVAKIDG 234 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+TTSHP + +D LI + ++ L+ +LHLPVQSGSDRIL +M R HTA EY+ + Sbjct: 235 IDRIRFTTSHPVEFTDSLIDVYAEVPELVSHLHLPVQSGSDRILMAMKRGHTALEYKSKM 294 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 RIR RPDI SSDFIVGFPGETD DF ATM L+ IG+ +FSF YS R GTP ++M Sbjct: 295 RRIRQARPDICFSSDFIVGFPGETDADFEATMKLIADIGFDMSFSFIYSSRPGTPAADMK 354 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432 + + VK +RL LQ+++ +Q + VG VL+ + K+ G+L GR+ Sbjct: 355 DDTPQEVKKQRLALLQQRINQQSQDISRKMVGNTERVLVTGYSKKDPGQLSGRT 408 >gi|229592783|ref|YP_002874902.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas fluorescens SBW25] gi|229364649|emb|CAY52570.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 442 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 197/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + D+++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPDMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RITKLPQVDVSFPEIEKFDHLP-----EPRIDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +RG DG ++L+ ++ + G+ R Sbjct: 174 VSRPFDDVLSEIIHLAENGVREVTLLGQNVNGYRGLTQDGRLADLAELIRVVAAVDGIER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH ++ L+ +LHLPVQSGSDRIL +M R HTA EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILSAMKRNHTALEYKSKLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I ISSDFIVGFPGET+ DF+ TM L++ +G+ ++SF YS R GTP ++++++ Sbjct: 294 RAAVPGICISSDFIVGFPGETEKDFQQTMKLIEDVGFDFSYSFVYSQRPGTPAADLVDET 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG +L+ + K+ G+L GR+ + V Sbjct: 354 PEALKKERLNALQHRLNQQGFEISRQMVGSTQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I + +L G L+ Sbjct: 414 CDNPTLIGQFADVHIDAAQPHSLRGSLL 441 >gi|170728025|ref|YP_001762051.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella woodyi ATCC 51908] gi|229890658|sp|B1KDV4|MIAB_SHEWM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|169813372|gb|ACA87956.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella woodyi ATCC 51908] Length = 474 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 194/447 (43%), Positives = 284/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ +GY ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLMDEYKGYTLTEEAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +L++ V GCVA EG+ I R+ V+++ GPQT +RLPE++++ Sbjct: 63 LGRWKKLKD----KNPNLIIGVGGCVASQEGKVIKDRAQCVDLIFGPQTLHRLPEMIDQI 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G K V+D + +KF+RL R G +AF++I EGC K+C+FCVVPYTRG E Sbjct: 119 EAGGKAVIDVSFPEIEKFDRLP-----EPRADGPSAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L + GV E+ LLGQNVNA+RG D E CTF++LL ++ I G+ R Sbjct: 174 VSRPLDDVILEIAQLAEQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + + +I + D L+ +LHLPVQSGSDRIL M R H A EY+ II R+ Sbjct: 234 LRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTQMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI +SSDFI+GFPGE+ DF TM L++ + + +FSF YS R GTP S++ + V Sbjct: 294 RKARPDIQVSSDFIIGFPGESKQDFEDTMKLIEDVQFDHSFSFIYSARPGTPASDLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 + K ERL LQ ++ +Q + ++ +G + +L+E K +L GR+ + V Sbjct: 354 TLDEKKERLAILQDRITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTETSRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG + V I DV ++L G + Sbjct: 414 ADPKHIGSFVDVEIVDVYTNSLRGNFI 440 >gi|294142164|ref|YP_003558142.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella violacea DSS12] gi|293328633|dbj|BAJ03364.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella violacea DSS12] Length = 474 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 192/447 (42%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ +GY ++ ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLMDEYKGYTLTDNAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +L++ V GCVA EG+ I R+ V+++ GPQT +RLPE++++ Sbjct: 63 LGRWKKLKD----KNPNLIIGVGGCVASQEGKMIKERAKCVDIIFGPQTLHRLPEMVDQV 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + GK V+D + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 KQGGKAVIDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG D + CTF++LL +++I G+ R Sbjct: 174 VSRPVDDVILEVAQLAEQGVREVNLLGQNVNAFRGATHDDDICTFAELLRYIADIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + S +I + D L+ +LHLPVQSGSD IL M R H A EY+ II R+ Sbjct: 234 VRFTTSHPIEFSQDIIDVYEDTPELVSFLHLPVQSGSDHILTQMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFI+GFPGE+ DF TM L++ + + +FSF YS R GTP +++ + V Sbjct: 294 RKARPDIQISSDFIIGFPGESKQDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 K ERL LQ+++ +Q + ++ +G + +L+E K +L GR+ + V Sbjct: 354 TLAEKKERLAILQERITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTETSRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG + V I DV ++L G + Sbjct: 414 ADPKHIGSFVDVEIVDVYTNSLRGTFI 440 >gi|288942386|ref|YP_003444626.1| MiaB family RNA modification enzyme [Allochromatium vinosum DSM 180] gi|288897758|gb|ADC63594.1| RNA modification enzyme, MiaB family [Allochromatium vinosum DSM 180] Length = 441 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/449 (44%), Positives = 281/449 (62%), Gaps = 12/449 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +P++ F+++YGCQMN YDS R+ + G E + ++AD+++LNTC IREKA EKV+ Sbjct: 1 MPRKLFIQTYGCQMNEYDSARLATALRVAAGLELTDQPEEADVLLLNTCSIREKAQEKVF 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGR + K +R DL++ V GCVA EGE I R+P V++V GPQT +RLP++L+ Sbjct: 61 SQLGRWKPWKQAR----PDLVIGVGGCVASQEGEAIRTRAPYVDLVFGPQTLHRLPQMLK 116 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 +R VD + +KF+ L R G TAF+++ EGC K+CT+CVVPYTRG Sbjct: 117 DLESSRRPQVDVSFPEIEKFDCLPA-----PRAEGPTAFVSVMEGCSKYCTYCVVPYTRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 EISR V+ E L + GV EI LLGQNVNA+RG DG + + L+ ++ ++G+ Sbjct: 172 EEISRPFDDVIAEVADLAEQGVREINLLGQNVNAYRGLMADGSTASLALLIRYVAAVEGI 231 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP + D LI+ ++ L ++HLPVQSGSDRIL +M R HTA EYR I Sbjct: 232 GRIRFTTSHPVEFGDDLIETFAEVPELASFVHLPVQSGSDRILAAMKRGHTALEYRCKIK 291 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R RPDI ISSDFIVGFP ETD DF AT+DL+D++G+ +FSF YS R GTP ++ + Sbjct: 292 RLREARPDICISSDFIVGFPNETDADFDATIDLIDQVGFDHSFSFVYSRRPGTPAADYPD 351 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439 V VK RL LQ+++ + VG + VL+E K+ +L GR+ + V Sbjct: 352 AVPLEVKKARLERLQQRIDTNAQRISRQMVGTVQRVLVEGPSRKDPAQLAGRTENNRVVN 411 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG + + IT+ ++L G+L Sbjct: 412 FDGPAELIGQFVDLTITESLPNSLRGQLA 440 >gi|254429447|ref|ZP_05043154.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alcanivorax sp. DG881] gi|196195616|gb|EDX90575.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alcanivorax sp. DG881] Length = 445 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/447 (43%), Positives = 288/447 (64%), Gaps = 17/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F++++GCQMN YDS RM D+ S G E ++ ++AD+++LNTC IREKA EKV+ Sbjct: 3 RKLFIQTHGCQMNEYDSTRMVDLLESSHGLESTDNPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+++ D+++ V GCVA EG+ I R+P V+VV GPQT +RLP L+ +A Sbjct: 63 LGRWKKLKDAK----PDMIIGVGGCVASQEGDAIRDRAPYVDVVFGPQTLHRLPGLITQA 118 Query: 144 RFGKRV-VDTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + + +D + +KF+ L VDG +AF++I EGC K+CTFCVVPYTRG Sbjct: 119 ASTRELAIDVTFPEIEKFDNLPEPSVDGP-------SAFVSIMEGCSKYCTFCVVPYTRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E+SR + V+ E + L D GV E+ LLGQNVNA++G G DG+ +DL+ + +I G+ Sbjct: 172 EEVSRPVQPVLSEIQHLADMGVREVNLLGQNVNAYQGVGADGDTLDLADLIRLIRDIDGI 231 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP + SD LI+ + D+ L+ +LHLPVQSGSDRIL M R H EY+ + Sbjct: 232 DRIRYTTSHPVEFSDALIQVYEDVPELVSHLHLPVQSGSDRILAMMKRNHMVLEYKSKLR 291 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +++ +RPDI+ SSDFI+GFPGETD DF TMDL+ IG+ +FSF YS R GTP +++ + Sbjct: 292 KLKRIRPDISFSSDFIIGFPGETDRDFEDTMDLIHDIGFDMSFSFIYSARPGTPAADLPD 351 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439 VD +VK +RL LQ+++ + + VG +L++ K+ G+L GR+ + V Sbjct: 352 DVDMDVKKQRLAILQQRINQNAQDISRKMVGSTQRILVDGFSKKDPGQLKGRTENNRVVN 411 Query: 440 LNSKNHN-IGDIIKVRITDVKISTLYG 465 + + IG + V I ++L G Sbjct: 412 FQCDDTDLIGQFVDVTIAQAYSNSLLG 438 >gi|300310058|ref|YP_003774150.1| tRNA modifying 2-methylthioadenine synthetase [Herbaspirillum seropedicae SmR1] gi|300072843|gb|ADJ62242.1| tRNA modifying 2-methylthioadenine synthetase protein [Herbaspirillum seropedicae SmR1] Length = 446 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 201/451 (44%), Positives = 284/451 (62%), Gaps = 15/451 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ S G + + ++AD+I+LNTC IREKA EKV+S Sbjct: 3 KKVFIKTFGCQMNEYDSDKMADVLNASDGLIKTDRPEEADVILLNTCSIREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK K LL+ V GCVA EGE I++R+P V++V GPQT +RLP+++ Sbjct: 63 LGRLRALK----KNNPALLIGVGGCVASQEGEAIIKRAPFVDMVFGPQTLHRLPQMISER 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R+ G+ VD + +KF+ L R G TA+++I EGC K+C++CVVPYTRG E Sbjct: 119 RYSGRPQVDISFPEIEKFDHLPPA-----RVEGATAYVSIMEGCSKYCSYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L D GV EI LLGQNVNA+RG DGE F+ L+ ++E+ G+ R Sbjct: 174 VSRRFEDVLTEVAGLADQGVKEIMLLGQNVNAYRGVMEDGEIADFALLIEYIAELPGIER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHP++ S LI + + L +L+LP Q GSDR L +M R +TA EY+ +I R+ Sbjct: 234 IRFVTSHPKEFSQRLIDTYAKVPKLCNHLYLPAQHGSDRTLAAMKRGYTALEYKSVIRRM 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R VRPDI + SDFIVGFPGET++DF A M LV +G+ +FSF +S R GTP +N+ + Sbjct: 294 RKVRPDITVQSDFIVGFPGETEEDFEALMKLVADVGFDNSFSFIFSARPGTPAANLPDDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 + VK RL LQ L + + A VG + VL+E K + +L GR+ + V + Sbjct: 354 PQEVKLARLQRLQAALNDNAARISAAQVGTVQRVLVEGVSKRREHELQGRTESNRVVNFD 413 Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELVV 469 + IG II+V IT+ +L GE+V Sbjct: 414 GGPNGQRLIGQIIEVSITEAFPFSLRGEIVT 444 >gi|260549787|ref|ZP_05824003.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter sp. RUH2624] gi|260407037|gb|EEX00514.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter sp. RUH2624] Length = 483 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 197/455 (43%), Positives = 296/455 (65%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GCQMN YDS RM D+ S GY + ++AD++++NTC IREKA EKV+S Sbjct: 31 KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTNPNEADILLMNTCSIREKAQEKVFSE 90 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 LGR R LK ++ DL++ V GCVA EG+ I +R+P V+++ GPQT +RLP++L++ Sbjct: 91 LGRWRKLK----EQNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146 Query: 143 -ARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 A+ K ++VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 147 HAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EI+LLGQNVN +RG+ +G CTF +LL ++ Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI G+ RLRYTTSHP + SD LI+ + DL ++ +LHLPVQSGS+ +LK+M R HT Y Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLKAMKRNHTIDVY 321 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I ++R +RPD+ +SSDFI+GFPGETD++F T+ + + + ++SF YS R GTP Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 S++ + E+VK ERL +Q+ +++ + DA +G+I VLIEK ++ LVG + Sbjct: 382 SDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILVGTADN 441 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 + V +G ++ IT++K ++ +YGEL+ Sbjct: 442 TRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476 >gi|53718317|ref|YP_107303.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia pseudomallei K96243] gi|53724681|ref|YP_102060.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia mallei ATCC 23344] gi|121600987|ref|YP_994016.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei SAVP1] gi|124383869|ref|YP_001028320.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei NCTC 10229] gi|126439490|ref|YP_001057762.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 668] gi|126448080|ref|YP_001081964.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei NCTC 10247] gi|126453332|ref|YP_001065006.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 1106a] gi|134279698|ref|ZP_01766410.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 305] gi|167737215|ref|ZP_02409989.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 14] gi|167814345|ref|ZP_02446025.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 91] gi|167844396|ref|ZP_02469904.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei B7210] gi|167892910|ref|ZP_02480312.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 7894] gi|167901395|ref|ZP_02488600.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei NCTC 13177] gi|167917639|ref|ZP_02504730.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei BCC215] gi|217419549|ref|ZP_03451055.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 576] gi|237810913|ref|YP_002895364.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei MSHR346] gi|238562538|ref|ZP_00440245.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei GB8 horse 4] gi|242314327|ref|ZP_04813343.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 1106b] gi|254177145|ref|ZP_04883802.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei ATCC 10399] gi|254181739|ref|ZP_04888336.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 1655] gi|254187671|ref|ZP_04894183.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei Pasteur 52237] gi|254196370|ref|ZP_04902794.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei S13] gi|254203744|ref|ZP_04910104.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei FMH] gi|254208720|ref|ZP_04915068.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei JHU] gi|254296218|ref|ZP_04963675.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 406e] gi|254360228|ref|ZP_04976498.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei 2002721280] gi|81380370|sp|Q63X63|MIAB_BURPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|81605634|sp|Q62MK8|MIAB_BURMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890460|sp|A3MNX8|MIAB_BURM7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890461|sp|A2S8Q1|MIAB_BURM9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890462|sp|A1V713|MIAB_BURMS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890463|sp|A3NRN5|MIAB_BURP0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890464|sp|A3N5Z1|MIAB_BURP6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|52208731|emb|CAH34667.1| putative tRNA thiotransferase protein MiaB [Burkholderia pseudomallei K96243] gi|52428104|gb|AAU48697.1| tRNA-i(6)A37 modification enzyme MiaB [Burkholderia mallei ATCC 23344] gi|121229797|gb|ABM52315.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei SAVP1] gi|124291889|gb|ABN01158.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei NCTC 10229] gi|126218983|gb|ABN82489.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 668] gi|126226974|gb|ABN90514.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 1106a] gi|126240950|gb|ABO04043.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei NCTC 10247] gi|134248898|gb|EBA48980.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 305] gi|147745256|gb|EDK52336.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei FMH] gi|147750596|gb|EDK57665.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei JHU] gi|148029468|gb|EDK87373.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei 2002721280] gi|157806026|gb|EDO83196.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 406e] gi|157935351|gb|EDO91021.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei Pasteur 52237] gi|160698186|gb|EDP88156.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei ATCC 10399] gi|169653113|gb|EDS85806.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei S13] gi|184212277|gb|EDU09320.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 1655] gi|217396853|gb|EEC36869.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 576] gi|237505165|gb|ACQ97483.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei MSHR346] gi|238522408|gb|EEP85852.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderia mallei GB8 horse 4] gi|242137566|gb|EES23968.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 1106b] Length = 457 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 194/454 (42%), Positives = 292/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+R LK ++ DLL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ R Sbjct: 63 LGRVRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAIAAGSAEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + L+ + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RP++++S+D IVGFPGETD DF TM LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPNLSLSTDIIVGFPGETDADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLAD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439 +K +RL LQ + E + + +G++ +L+E K+ +L GR+ + V Sbjct: 354 DTPRELKLKRLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRVVN 413 Query: 440 LNSKNHN----IGDIIKVRITDVKISTLYGELVV 469 + + IG +I V+I +L GELV+ Sbjct: 414 FPAPSAAHPRLIGQMIDVKINHAYPHSLRGELVL 447 >gi|167718182|ref|ZP_02401418.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei DM98] Length = 457 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 194/454 (42%), Positives = 292/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+R LK ++ DLL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ R Sbjct: 63 LGRVRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAIAAGSAEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + L+ + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RP++++S+D IVGFPGETD DF TM LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPNLSLSTDIIVGFPGETDADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLAD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439 +K +RL LQ + E + + +G++ +L+E K+ +L GR+ + V Sbjct: 354 DTPRELKLKRLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRVVN 413 Query: 440 LNSKNHN----IGDIIKVRITDVKISTLYGELVV 469 + + IG +I V+I +L GELV+ Sbjct: 414 FPAPSAAHPRLIGQMIDVKINHAYPHSLRGELVL 447 >gi|91228826|ref|ZP_01262733.1| hypothetical protein V12G01_00185 [Vibrio alginolyticus 12G01] gi|269965463|ref|ZP_06179582.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|91187631|gb|EAS73956.1| hypothetical protein V12G01_00185 [Vibrio alginolyticus 12G01] gi|269829942|gb|EEZ84172.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 474 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/447 (45%), Positives = 288/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRERAPYVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QSDDAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DGE C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGETD DF+ TM L+ + + +FSF +SPR GTP ++ V Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E VK ERL LQ+ + Q + ++ +G VL+E K+ +L R+ + V Sbjct: 354 SEQVKKERLYELQQTINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+I DV ++L GELV Sbjct: 414 GSADLIGQFVDVKIVDVFANSLRGELV 440 >gi|307730932|ref|YP_003908156.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. CCGE1003] gi|307585467|gb|ADN58865.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. CCGE1003] Length = 461 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/454 (43%), Positives = 293/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G + ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + DL++ V GCVA EG I+ R+P V++V GPQT +RLP+++++ Sbjct: 63 LGRVRELKEA----NPDLIIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDKR 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ ++EI G+ Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAFRGALTLGSSEIADFATLIEYVAEIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGET++DF M LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMKYDTSFSFIYSPRPGTPAANLPD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 VK +RL LQ + E +D+ VG++ +L+E+ K+ +L GR+ + V Sbjct: 354 DTPREVKLKRLQHLQATIEENVQRISDSMVGKVERILVERPARKDPNELAGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + S IG ++ V+I +L GELV+ Sbjct: 414 FPAPVASHARLIGQMVDVKIVKAYPHSLRGELVL 447 >gi|325524861|gb|EGD02810.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia sp. TJI49] Length = 457 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/454 (43%), Positives = 291/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + K G LL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ Sbjct: 63 LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSSEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGET++DF M LV + Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHDMSYDTSFSFIYSPRPGTPAANLHD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 VK +RL LQ + E + + VG++ +L+E K+ +L GR+ + V Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELAGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L S IG +I V+I +L GELV+ Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELVL 447 >gi|209517500|ref|ZP_03266340.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. H160] gi|209502033|gb|EEA02049.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. H160] Length = 461 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 197/458 (43%), Positives = 295/458 (64%), Gaps = 22/458 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G + ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSE 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+R LK++ DL++ V GCVA EG I+ R+P V++V GPQT +RLP++++ R Sbjct: 63 LGRVRELKDA----NPDLIIGVGGCVASQEGASIVARAPYVDIVFGPQTLHRLPQMIDVR 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GL----DGEKCTFSDLLYSLSE 256 +SR L V+ E L D GV E+TLLGQNVNA+RGK G E F+ L+ +++ Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGKFGGALTIGSTEIADFATLIEYVAD 233 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I G+ R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ Sbjct: 234 IPGIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYK 293 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +I ++R++RPD+++S+D IVGFPGETD+DF M LV+++ Y +FSF YSPR GTP + Sbjct: 294 SVIRKLRAIRPDLSLSTDMIVGFPGETDEDFAKMMALVEEMKYDTSFSFIYSPRPGTPAA 353 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435 N+ + VK +RL LQ + E ++A VG++ +L+E+ K+ +L GR+ Sbjct: 354 NLHDDTPREVKLKRLQHLQATIEENVQRISNAMVGKVERILVERPARKDPNELAGRTENN 413 Query: 436 QSV----VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + V + S IG ++ V+I +L GELV+ Sbjct: 414 RVVNFPAPVASHARLIGQMVDVKIVHAYPHSLRGELVM 451 >gi|167909625|ref|ZP_02496716.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 112] Length = 457 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 194/454 (42%), Positives = 292/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+R LK ++ DLL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ R Sbjct: 63 LGRMRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAIAAGSAEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + L+ + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RP++++S+D IVGFPGETD DF TM LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPNLSLSTDIIVGFPGETDADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLAD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439 +K +RL LQ + E + + +G++ +L+E K+ +L GR+ + V Sbjct: 354 DTPRELKLKRLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRVVN 413 Query: 440 LNSKNHN----IGDIIKVRITDVKISTLYGELVV 469 + + IG +I V+I +L GELV+ Sbjct: 414 FPAPSAAHPRLIGQMIDVKINHAYPHSLRGELVL 447 >gi|28897507|ref|NP_797112.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio parahaemolyticus RIMD 2210633] gi|260363858|ref|ZP_05776610.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus K5030] gi|260898985|ref|ZP_05907426.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus Peru-466] gi|260900745|ref|ZP_05909140.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus AQ4037] gi|81728328|sp|Q87RP4|MIAB_VIBPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|28805719|dbj|BAC58996.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087476|gb|EFO37171.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus Peru-466] gi|308108999|gb|EFO46539.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus AQ4037] gi|308114637|gb|EFO52177.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus K5030] Length = 474 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 201/447 (44%), Positives = 288/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRERAPYVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QTDDAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DGE C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGETD DF+ TM L+ + + +FSF +SPR GTP ++ + Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDI 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E VK ERL LQ+ + Q + ++ + VL+E K+ +L R+ + V Sbjct: 354 PEQVKKERLYELQQTINAQAMRYSRLMLATEQRVLVEGPSKKNLMELRARTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GELV Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGELV 440 >gi|50120258|ref|YP_049425.1| hypothetical protein ECA1319 [Pectobacterium atrosepticum SCRI1043] gi|81645754|sp|Q6D7K6|MIAB_ERWCT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|49610784|emb|CAG74229.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 474 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/448 (44%), Positives = 285/448 (63%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLGSTHGYELTEIAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ +L++ V GCVA EG I R+ V+V+ GPQT +RLPE++ Sbjct: 63 LGRWKALKDL----NPNLIIGVGGCVASQEGAHIRERAHYVDVIFGPQTLHRLPEMINHV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G R +VD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG Sbjct: 119 Q-GTRSPIVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR V+ E +L GV E+ LLGQNVNA+RG+ DGE C+F++LL ++ I G+ Sbjct: 173 EVSRPCDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETYDGEICSFAELLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I + D L+ +LHLPVQSGSDR+L M RRHTA EY+ II + Sbjct: 233 RVRFTTSHPIEFTDDIISVYEDTPELVSFLHLPVQSGSDRVLTMMKRRHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 + + RP I ISSDFI+GFPGET DF TM L+ + + ++SF YS R GTP ++M++ Sbjct: 293 LHNARPGILISSDFIIGFPGETQADFEQTMKLIADVNFDMSYSFVYSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V E K +RL LQ ++ +Q + F+ +G + +L+E ++ +L GR+ + V Sbjct: 353 VLEEEKKQRLYLLQDRITKQAMRFSRLMLGTVQRILVEGTSRKSVMELSGRTENNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L G +V Sbjct: 413 EGTPDMIGKFVDVEIVDVYTNSLRGIVV 440 >gi|262280174|ref|ZP_06057958.1| tRNA-I(6)A37 thiotransferase [Acinetobacter calcoaceticus RUH2202] gi|262257952|gb|EEY76686.1| tRNA-I(6)A37 thiotransferase [Acinetobacter calcoaceticus RUH2202] Length = 483 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 197/455 (43%), Positives = 295/455 (64%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GCQMN YDS RM D+ S GY ++ ++AD++++NTC IREKA EKV+S Sbjct: 31 KKLYIETQGCQMNEYDSHRMADLLGDSHGYILTSNPNEADILLMNTCSIREKAQEKVFSE 90 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140 LGR R LK+ + DL++ V GCVA EG+ I +R+P V+++ GPQT +RLP++L Sbjct: 91 LGRWRKLKD----KNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146 Query: 141 ----ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 E+ + K ++VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 147 NAQVEKPKKDKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EI+LLGQNVN +RG+ +G CTF +LL ++ Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI G+ RLRYTTSHP + SD LI+ + DL ++ +LHLPVQSGS+ +LK+M R HT Y Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLKAMKRNHTIDVY 321 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I ++R +RPD+ +SSDFI+GFPGETD++F T+ + + + ++SF YS R GTP Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 S++ + E VK ERL +QK +++ + DA +G+I VLIEK ++ L+G + Sbjct: 382 SDLPDTTPEQVKKERLAQVQKVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILIGTADN 441 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 + V +G ++ IT++K ++ +YGEL+ Sbjct: 442 TRLVTFVGDATWVGRFAEIEITEIKTLNFVYGELL 476 >gi|77461171|ref|YP_350678.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas fluorescens Pf0-1] gi|123744592|sp|Q3K6B7|MIAB_PSEPF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|77385174|gb|ABA76687.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 442 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 197/448 (43%), Positives = 280/448 (62%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + D+++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPDMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RISKLPQVDVSFPEIEKFDHLP-----EPRIDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +RG DG ++L+ ++ + G+ R Sbjct: 174 VSRPFDDVIAEIIHLAENGVREVTLLGQNVNGYRGLTHDGRLADLAELIRVVAAVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH ++ L+ +LHLPVQSGSDRIL +M R HTA EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTALEYKSKLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I ISSDFIVGFPGET+ DF TM L+ +G+ ++SF YS R GTP +++ + Sbjct: 294 RAAVPGICISSDFIVGFPGETEKDFEQTMKLIADVGFDFSYSFVYSQRPGTPAADLADDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG + +L+ + K+ G+L GR+ + V Sbjct: 354 PEELKKERLNALQHRLNQQGFEISRQMVGSVQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 N IG V I + +L G L+ Sbjct: 414 CDNPTLIGQFADVHIDAAQPHSLRGSLI 441 >gi|121997684|ref|YP_001002471.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halorhodospira halophila SL1] gi|229890553|sp|A1WVF7|MIAB_HALHL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|121589089|gb|ABM61669.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halorhodospira halophila SL1] Length = 474 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 203/450 (45%), Positives = 284/450 (63%), Gaps = 13/450 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVY 81 V +R +V++ GCQMN YD+ R+ D+ SQ G RV+ ++ADL++LNTC +REKA EKV+ Sbjct: 19 VSERVYVETQGCQMNDYDAERLVDVLVSQAGARRVDRPEEADLLLLNTCSVREKAQEKVF 78 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGR R K ++ +L+ V GCVA EG EILRR+P V++V GPQT +RLP++L Sbjct: 79 SQLGRWRRYK----QDNPTVLIGVGGCVASQEGAEILRRAPFVDLVFGPQTLHRLPQMLA 134 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R R G VD D+ +KF+ L R G TA++++ EGC K+C+FCVVPYTRG Sbjct: 135 RRRSGASAQVDVDFPEIEKFDHLP-----QPRAEGPTAYVSVMEGCSKYCSFCVVPYTRG 189 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 EISR ++ V+ E R L + GV E+ LLGQNVNA+ G DGE+ L+ +++ I G+ Sbjct: 190 DEISRPVADVLAEVRSLAEQGVREVNLLGQNVNAYAGALDDGERADLGLLIEAVARIPGI 249 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP + LI A+ D+ L +LHLPVQSGSD ILK M R H Y +ID Sbjct: 250 DRIRFTTSHPAEFHSGLIDAYRDVPELADFLHLPVQSGSDLILKLMKRGHDIAAYEALID 309 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY-AQAFSFKYSPRLGTPGSNML 379 +IR+VRP + +++D IVGFPGET+ +F T+ +VD++G+ AFSF YSPR GTP + + Sbjct: 310 QIRAVRPGLVLATDLIVGFPGETEAEFEETLAMVDRVGFDGGAFSFVYSPRPGTPAAELH 369 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438 + V E K L LQ +L EQQ + A +G VLI+ ++ +L GR+ + V Sbjct: 370 DGVPEADKRAWLQRLQARLHEQQSAAARALLGTRQSVLIDGPSRRDPRELSGRTSGNRVV 429 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG +V ITD + +L G +V Sbjct: 430 NFPGDPSWIGRFAEVEITDARTHSLRGRVV 459 >gi|167822821|ref|ZP_02454292.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 9] gi|226196667|ref|ZP_03792247.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei Pakistan 9] gi|225931198|gb|EEH27205.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei Pakistan 9] Length = 457 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 194/454 (42%), Positives = 291/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+R LK ++ DLL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ R Sbjct: 63 LGRVRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAIAAGSAEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + L+ + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RP++++S+D IVGFPGETD DF TM LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPNLSLSTDIIVGFPGETDADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLAD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439 +K +RL LQ + E + + +G++ +L+E K +L GR+ + V Sbjct: 354 DTPRELKLKRLQHLQATIEENVARISQSMLGKVERILVEGPSRKNPNELAGRTENNRVVN 413 Query: 440 LNSKNHN----IGDIIKVRITDVKISTLYGELVV 469 + + IG +I V+I +L GELV+ Sbjct: 414 FPAPSAAHPRLIGQMIDVKINHAYPHSLRGELVL 447 >gi|309379482|emb|CBX21848.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 442 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V DDAD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ L++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ +GE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N VG + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT +L G+ V Sbjct: 413 TGTPDMINQMIDLEITGAYTFSLRGKTV 440 >gi|115352797|ref|YP_774636.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia ambifaria AMMD] gi|122322269|sp|Q0BC21|MIAB_BURCM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|115282785|gb|ABI88302.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria AMMD] Length = 457 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/454 (43%), Positives = 293/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + K G LL+ V GCVA EG I+ R+P V++V GPQT +RLP+++++ Sbjct: 63 LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDQR 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSTEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGET++DF M LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMSYDTSFSFIYSPRPGTPAANLHD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 VK +RL LQ + E + + VG++ +L+E K+ +L GR+ + V Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISRSMVGKVERILVEGPSRKDPNELSGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L S IG +I V+I +L GEL++ Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447 >gi|170698977|ref|ZP_02890035.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria IOP40-10] gi|170136084|gb|EDT04354.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria IOP40-10] Length = 457 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/454 (43%), Positives = 293/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + K G LL+ V GCVA EG I+ R+P V++V GPQT +RLP+++++ Sbjct: 63 LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDQR 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSTEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGET++DF M LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMSYDTSFSFIYSPRPGTPAANLHD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 VK +RL LQ + E + + VG++ +L+E K+ +L GR+ + V Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISRSMVGKVERILVEGPSRKDPNELSGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L S IG +I V+I +L GEL++ Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447 >gi|325123551|gb|ADY83074.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter calcoaceticus PHEA-2] Length = 483 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/455 (43%), Positives = 295/455 (64%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GCQMN YDS RM D+ S GY + ++AD++++NTC IREKA EKV+S Sbjct: 31 KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTNPNEADILLMNTCSIREKAQEKVFSE 90 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140 LGR R LK+ + DL++ V GCVA EG+ I +R+P V+++ GPQT +RLP++L Sbjct: 91 LGRWRKLKD----KNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146 Query: 141 ----ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 E+ + K ++VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 147 NAQVEKPKKDKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EI+LLGQNVN +RG+ +G CTF +LL ++ Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGSICTFPELLRLVA 261 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI G+ RLRYTTSHP + SD LI+ + DL ++ +LHLPVQSGS+ +L++M R HT Y Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLQAMKRNHTIDVY 321 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I ++R +RPD+ +SSDFI+GFPGETD++F T+ + + + ++SF YS R GTP Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 S++ + E+VK ERL +QK +++ + DA +G+I VLIEK ++ L+G + Sbjct: 382 SDLPDTTPEHVKKERLAQVQKVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILLGTADN 441 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 + V +G ++ IT++K ++ +YGEL+ Sbjct: 442 TRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476 >gi|71898877|ref|ZP_00681044.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification enzyme MiaB [Xylella fastidiosa Ann-1] gi|71731289|gb|EAO33353.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification enzyme MiaB [Xylella fastidiosa Ann-1] Length = 497 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/455 (42%), Positives = 287/455 (63%), Gaps = 22/455 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F+K++GCQMN YDS +M D+ + + E ++ ++AD+I++NTC IREKA EKV+S L Sbjct: 49 KLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINTCSIREKAQEKVFSQL 108 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR R LK + G D+++ V GCVA EGE I++R+P V++V GPQT +RLP+++ R Sbjct: 109 GRWRALKTN----GRDVIIGVGGCVASQEGETIVKRAPYVDLVFGPQTLHRLPDMIRARR 164 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R VD + +KF+ L R G +AF++I EGC K+C+FCVVPYTRG E+ Sbjct: 165 EQNRPQVDISFPEIEKFDHLPTP-----RAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEV 219 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-------KGLDGEKCTFSDL---LYS 253 SR V+ E L GV EI LLGQNVNA+RG + ++DL + + Sbjct: 220 SRPFEDVLTEIAHLATQGVREINLLGQNVNAYRGAMDPGPSNNTNPAPPPYADLGLLIRA 279 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 +++ + + R+R+TTSHP + SD L++A+ D+ L +LHLPVQSGSDRIL +M R +TA Sbjct: 280 IAQFESIGRIRFTTSHPLEFSDSLVEAYRDVPQLANHLHLPVQSGSDRILSAMKRGYTAL 339 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 E++ I ++R+VRPDI+ISSDFI+GFPGE+D DF+ TM L++ IG+ Q+FSF YS R GT Sbjct: 340 EFKSKIRKLRAVRPDISISSDFIIGFPGESDTDFQKTMQLIEDIGFDQSFSFIYSRRPGT 399 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432 P SN+ + + +K RL LQK + + +G + VL+E K+ +L G++ Sbjct: 400 PASNLEDHTPDEIKRTRLEHLQKHINAYAADISKRMIGTVQTVLVEGPSKKNPNELTGKT 459 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ V IG I V IT+ ++L G + Sbjct: 460 ENMRPVNFPGHPRLIGQFIDVHITEALTNSLRGRV 494 >gi|260879147|ref|ZP_05891502.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus AN-5034] gi|308090270|gb|EFO39965.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus AN-5034] Length = 467 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 201/447 (44%), Positives = 288/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRERAPYVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QTDDAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DGE C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGETD DF+ TM L+ + + +FSF +SPR GTP ++ + Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDI 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E VK ERL LQ+ + Q + ++ + VL+E K+ +L R+ + V Sbjct: 354 PEQVKKERLYELQQTINAQAMRYSRLMLATEQRVLVEGPSKKNLMELRARTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GELV Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGELV 440 >gi|15837508|ref|NP_298196.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xylella fastidiosa 9a5c] gi|81547885|sp|Q9PEX2|MIAB_XYLFA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|9105825|gb|AAF83716.1|AE003930_6 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 497 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/471 (42%), Positives = 292/471 (61%), Gaps = 22/471 (4%) Query: 10 VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLN 68 AH + D+ + F+K++GCQMN YDS +M D+ + + E ++ ++AD+I++N Sbjct: 33 AAHPGNPSHDRPPSRGKLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILIN 92 Query: 69 TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128 TC IREKA EKV+S LGR R LK S G D+++ V GCVA EGE I++R+P V++V Sbjct: 93 TCSIREKAQEKVFSQLGRWRALKTS----GRDVIIGVGGCVASQEGEAIVKRAPYVDLVF 148 Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187 GPQT +RLP+++ R R VD + +KF+ L R G +AF++I EGC Sbjct: 149 GPQTLHRLPDMIRARREQNRPQVDIRFPEIEKFDHLPTP-----RAEGPSAFVSIMEGCS 203 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-------KGL 240 K+C+FCVVPYTRG E+SR V+ E L GV EI LLGQNVNA+RG Sbjct: 204 KYCSFCVVPYTRGEEVSRPFEDVLTEIAHLATQGVREINLLGQNVNAYRGAMDPGPSNNT 263 Query: 241 DGEKCTFSDL---LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297 + ++DL + ++++ + + R+R+TTSHP + SD L++A+ D+ L +LHLPVQS Sbjct: 264 NPAPPPYADLGLLIRAIAQFESIGRIRFTTSHPLEFSDSLVEAYRDVPQLANHLHLPVQS 323 Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 GSDRIL +M R +TA E++ I ++R+VRPDI+ISSDFI+GFPGE+D DF+ TM L++ I Sbjct: 324 GSDRILSAMKRGYTALEFKSKIRKLRAVRPDISISSDFIIGFPGESDTDFQKTMQLIEDI 383 Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417 G+ Q+FSF YS R GTP SN+ + + +K RL LQK + + +G + VL Sbjct: 384 GFDQSFSFIYSRRPGTPASNLEDHTPDEIKRTRLEHLQKHINTYAADISKRMIGTVQTVL 443 Query: 418 IEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 +E K+ +L G++ ++ V IG I V IT+ ++L G + Sbjct: 444 VEGPSKKNPNELTGKTENMRPVNFPGHPRLIGQFIDVHITEALSNSLRGRV 494 >gi|330818257|ref|YP_004361962.1| 2-methylthioadenine synthetase [Burkholderia gladioli BSR3] gi|327370650|gb|AEA62006.1| 2-methylthioadenine synthetase [Burkholderia gladioli BSR3] Length = 457 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/454 (43%), Positives = 289/454 (63%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ S+G + + +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKIYIKTFGCQMNEYDSDKMVDVLNASEGLVKTDRPEDADVILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + +L+V V GCVA EG I+ R+P V+VV GPQT +RLP++++ Sbjct: 63 LGRVRELKEA----NPNLIVGVGGCVASQEGAAIVARAPYVDVVFGPQTLHRLPQMIDAR 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RASGRSQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ ++E+ G+ Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTQGSEEIADFATLIEYVAELPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ S L+ + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFSQRLLDVYARVPKLVNHLHLPVQHGSDRILMAMKRGYTVLEYKSLIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D I+GFPGET+ DF TM LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDIIIGFPGETEADFDKTMQLVHEMSYDTSFSFIYSPRPGTPAANLHD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 VK +RL LQ + E + + VG+I +L+E K+ +L GR+ + V Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISASMVGRIERILVEGPSRKDPNELAGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L S IG +I VRI +L GELV+ Sbjct: 414 FPAPLASHARLIGQMIDVRINHAYPHSLRGELVL 447 >gi|172061651|ref|YP_001809303.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia ambifaria MC40-6] gi|229890455|sp|B1YWB9|MIAB_BURA4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|171994168|gb|ACB65087.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria MC40-6] Length = 457 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 197/454 (43%), Positives = 293/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYIKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + K G LL+ V GCVA EG I+ R+P V++V GPQT +RLP+++++ Sbjct: 63 LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDQR 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSTEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGET++DF M LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMSYDTSFSFIYSPRPGTPAANLHD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 VK +RL LQ + E + + VG++ +L+E K+ +L GR+ + V Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISRSMVGKVERILVEGPSRKDPNELSGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L S IG +I V+I +L GEL++ Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447 >gi|295677633|ref|YP_003606157.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. CCGE1002] gi|295437476|gb|ADG16646.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. CCGE1002] Length = 461 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 197/458 (43%), Positives = 294/458 (64%), Gaps = 22/458 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G + ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR+R LK++ +L++ V GCVA EG I+ R+P V++V GPQT +RLP+++ ER Sbjct: 63 LGRVRELKDA----NPNLIIGVGGCVASQEGASIVARAPYVDIVFGPQTLHRLPQMIDER 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GL----DGEKCTFSDLLYSLSE 256 +SR L V+ E L D GV E+TLLGQNVNA+RGK G E F+ L+ +++ Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGKFGGALTLGSTEIADFATLIEYVAD 233 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I G+ R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ Sbjct: 234 IPGIERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYK 293 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +I ++R++RPD+++S+D IVGFPGET++DF M LV+++ Y +FSF YSPR GTP + Sbjct: 294 SVIRKLRAIRPDLSLSTDMIVGFPGETEEDFAKMMALVEEMKYDTSFSFIYSPRPGTPAA 353 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435 N+ + VK +RL LQ + E +DA VG + +L+E+ K+ +L GR+ Sbjct: 354 NLHDDTPREVKLKRLQHLQATIEENVQRISDAMVGNVERILVERPARKDPNELAGRTENN 413 Query: 436 QSV----VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + V + S IG ++ V+I +L GELV+ Sbjct: 414 RVVNFPAPVASHARLIGQMVDVKIVHAYPHSLRGELVM 451 >gi|323527295|ref|YP_004229448.1| RNA modification enzyme, MiaB family [Burkholderia sp. CCGE1001] gi|323384297|gb|ADX56388.1| RNA modification enzyme, MiaB family [Burkholderia sp. CCGE1001] Length = 461 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/454 (42%), Positives = 293/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G + ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + DL++ V GCVA EG I+ R+P V++V GPQT +RLP+++++ Sbjct: 63 LGRVRELKEA----NPDLIIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDKR 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTLGSSEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGET++DF M LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMKYDTSFSFIYSPRPGTPAANLHD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 VK +RL LQ + E +D+ VG++ +L+E+ K+ +L GR+ + V Sbjct: 354 DTPREVKLKRLQHLQATIEENVQRISDSMVGKVERILVERPARKDPNELAGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + S IG ++ V+I +L GELV+ Sbjct: 414 FPAPVASHARLIGQMVDVKIVKAYPHSLRGELVL 447 >gi|134296886|ref|YP_001120621.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia vietnamiensis G4] gi|229890494|sp|A4JHN3|MIAB_BURVG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|134140043|gb|ABO55786.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia vietnamiensis G4] Length = 457 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/454 (43%), Positives = 291/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + K G LL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ Sbjct: 63 LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDAR 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RASGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK--CTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALSAGSADIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGET+DDF M LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEDDFDKMMALVHEMSYDTSFSFIYSPRPGTPAANLHD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 VK +RL LQ + E + + VG++ +L+E K+ +L GR+ + V Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELSGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L S IG +I V+I +L GEL++ Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447 >gi|229890698|sp|A9HZZ2|MIAB_BORPD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 480 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/443 (44%), Positives = 289/443 (65%), Gaps = 13/443 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS +M D+ QG E ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 32 RKLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEDADVILFNTCSVREKAQEKVFSD 91 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+++LK K DL++ V GCVA EGE I++R+P V+VV GPQT +RLPEL+ R Sbjct: 92 LGRVQHLK----KLNPDLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPELIRRR 147 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G VD + +KF+ L R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 148 RASGASQVDISFPEIEKFDALPP-----PRIEGATAFVSIMEGCSKYCSFCVVPYTRGEE 202 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L D GV E+TLLGQNVNA+RG G GE F+ LL + EI G+ Sbjct: 203 VSRPFDDVLVEVADLADQGVKEVTLLGQNVNAYRGPMGDTGEIADFATLLEYVHEIPGIE 262 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP++M+ ++ A+ +L L+ +LHLPVQ+GSDR+L +M R +T E++ ++ R Sbjct: 263 RIRYTTSHPKEMTQRMVDAYANLPKLVSFLHLPVQAGSDRVLAAMKRGYTTLEFKSVVRR 322 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RP + +SSDFIVGFPGET++DF TM L++ +G+ +FSF YS R GTP +++++ Sbjct: 323 LRAARPGLTLSSDFIVGFPGETEEDFDKTMKLIEDVGFDTSFSFIYSRRPGTPAADLVDD 382 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440 + VK RL LQ + Q + A VG +L+E ++ +L+GR+ + V Sbjct: 383 TPQEVKLRRLQQLQALINAQAAAIAQAMVGTRQRLLVEGPSRRDPNELMGRTENNRIVNF 442 Query: 441 NSKNHNIGDIIKVRITDVKISTL 463 + IG ++ V ITD ++L Sbjct: 443 PAPARLIGQMVDVIITDAYPNSL 465 >gi|171321297|ref|ZP_02910259.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria MEX-5] gi|171093424|gb|EDT38607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia ambifaria MEX-5] Length = 457 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/454 (43%), Positives = 292/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + K G LL+ V GCVA EG I+ R+P V++V GPQT +RLP+++++ Sbjct: 63 LGRVRELKEA--KPG--LLIGVGGCVASQEGASIVSRAPYVDLVFGPQTLHRLPQMIDQR 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RASGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGALTAGSTEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGET+ DF M LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEADFDKMMALVHEMSYDTSFSFIYSPRPGTPAANLHD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 VK +RL LQ + E + + VG++ +L+E K+ +L GR+ + V Sbjct: 354 DTPREVKLKRLQHLQATIEENVARISQSMVGKVERILVEGPSRKDPNELSGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L S IG +I V+I +L GEL++ Sbjct: 414 FPAPLASHPRLIGQMIDVKINHAYPHSLRGELLL 447 >gi|161869349|ref|YP_001598516.1| hypothetical protein NMCC_0355 [Neisseria meningitidis 053442] gi|229890574|sp|A9M1G4|MIAB_NEIM0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|161594902|gb|ABX72562.1| bifunctional enzyme involved in thiolation and methylation of tRNA [Neisseria meningitidis 053442] Length = 442 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 194/448 (43%), Positives = 283/448 (63%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V D+AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ L++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+ G+ DGE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYCGEMDDGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N +G + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + I +I + IT+ +L G++V Sbjct: 413 TGTPNMINQMIDLEITEAYTFSLRGKVV 440 >gi|71276464|ref|ZP_00652740.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification enzyme MiaB [Xylella fastidiosa Dixon] gi|170731017|ref|YP_001776450.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xylella fastidiosa M12] gi|229891034|sp|B0U4P1|MIAB_XYLFM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|71162780|gb|EAO12506.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification enzyme MiaB [Xylella fastidiosa Dixon] gi|167965810|gb|ACA12820.1| bifunctional enzyme involved in thiolation and methylation of tRNA [Xylella fastidiosa M12] Length = 497 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 194/455 (42%), Positives = 287/455 (63%), Gaps = 22/455 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F+K++GCQMN YDS +M D+ + + E ++ ++AD+I++NTC IREKA EKV+S L Sbjct: 49 KLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINTCSIREKAQEKVFSQL 108 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR R LK + G D+++ V GCVA EGE I++R+P V++V GPQT +RLP+++ R Sbjct: 109 GRWRALKTN----GRDVIIGVGGCVASQEGETIVKRAPYVDLVFGPQTLHRLPDMIRARR 164 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R +D + +KF+ L R G +AF++I EGC K+C+FCVVPYTRG E+ Sbjct: 165 EQNRPQIDISFPEIEKFDHLPTP-----RAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEV 219 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-------KGLDGEKCTFSDL---LYS 253 SR V+ E L GV EI LLGQNVNA+RG + ++DL + + Sbjct: 220 SRPFEDVLTEIAHLATQGVREINLLGQNVNAYRGAMDPGPSNNTNPAAPPYADLGLLIRA 279 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 +++ + + R+R+TTSHP + SD L++A+ D+ L +LHLPVQSGSDRIL +M R +TA Sbjct: 280 IAQFESIGRIRFTTSHPLEFSDSLVEAYRDIPQLANHLHLPVQSGSDRILSAMKRGYTAL 339 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 E++ I ++R+VRPDI+ISSDFI+GFPGE+D DF+ TM L++ IG+ Q+FSF YS R GT Sbjct: 340 EFKSKIRKLRAVRPDISISSDFIIGFPGESDTDFQKTMQLIEDIGFDQSFSFIYSRRPGT 399 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432 P SN+ + + +K RL LQK + + +G + VL+E K+ +L G++ Sbjct: 400 PASNLEDHTPDEIKRTRLEHLQKHINAYAADISKRMIGTVQTVLVEGPSKKNPNELTGKT 459 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ V IG I V IT+ ++L G + Sbjct: 460 ENMRPVNFPGNPRLIGQFIDVHITEALTNSLRGRV 494 >gi|293610875|ref|ZP_06693175.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827219|gb|EFF85584.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 483 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/455 (43%), Positives = 295/455 (64%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GCQMN YDS RM D+ S GY + ++AD++++NTC IREKA EKV+S Sbjct: 31 KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTNPNEADILLMNTCSIREKAQEKVFSE 90 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140 LGR R LK+ + DL++ V GCVA EG+ I +R+P V+++ GPQT +RLP++L Sbjct: 91 LGRWRKLKD----KNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146 Query: 141 ----ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 E+ + K ++VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 147 NAQVEKPKKDKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EI+LLGQNVN +RG+ +G CTF +LL ++ Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI G+ RLRYTTSHP + SD LI+ + DL ++ +LHLPVQSGS+ +L++M R HT Y Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLQAMKRNHTIDVY 321 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I ++R +RPD+ +SSDFI+GFPGETD++F T+ + + + ++SF YS R GTP Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 S++ + E+VK ERL +QK +++ + DA +G+I VLIEK ++ L+G + Sbjct: 382 SDLPDTTPEHVKKERLAQVQKVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILLGTADN 441 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 + V +G ++ IT++K ++ +YGEL+ Sbjct: 442 TRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 476 >gi|152996920|ref|YP_001341755.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinomonas sp. MWYL1] gi|229890562|sp|A6VZE1|MIAB_MARMS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|150837844|gb|ABR71820.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinomonas sp. MWYL1] Length = 451 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 193/447 (43%), Positives = 290/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F++++GCQMN YDS RM D+ S E ++ ++AD+++LNTC IREKA +KVY Sbjct: 3 KKLFIQTHGCQMNEYDSSRMADLLGESHEMELTDNAEEADVLLLNTCSIREKAQDKVYHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ +L++ V GCVA EG+ I +R+ V+++ GPQT ++LPE++ A Sbjct: 63 LGRWKKLK----QKNPNLVIGVGGCVASQEGDAIRKRAKHVDMIFGPQTLHKLPEMVNAA 118 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D + +KF+ L R G AF++I EGC K+CTFCVVPYTRG E+ Sbjct: 119 GKHIPITDVTFPEIEKFDHLPA-----PRVEGAEAFVSIMEGCSKYCTFCVVPYTRGEEV 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E +L + GV EI LLGQNVNA+RG +G++ +D+++++++I G+ R+ Sbjct: 174 SRPFDSILKEVVQLAEQGVREIHLLGQNVNAYRGDTAEGDEADLADIIHAVAQIDGVERI 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP + SD LI+A + L+ +LHLPVQSG+D IL +M R H Y I+RI+ Sbjct: 234 RFTTSHPVEFSDSLIEAFRNEPKLVSHLHLPVQSGADNILSAMKRGHDRQYYIDKINRIK 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 RP I++SSDFI+GFPGETDDDF TM+L+ +IG+ +FSF YS R GTP SN+ + Sbjct: 294 EARPGISLSSDFIIGFPGETDDDFVDTMNLIQEIGFDHSFSFVYSQRPGTPASNLEDDTP 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442 E+VK ERL LQ+++ +Q + + VG++ +LI + ++ G+L GR+ + V + Sbjct: 354 EDVKKERLAILQRRISQQAYDISLSMVGEVQRILISGYSPRDPGQLQGRTENNRIVNFRA 413 Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468 + IG V ITD ++L GELV Sbjct: 414 FDPQLIGKFADVVITDAYPNSLLGELV 440 >gi|127513851|ref|YP_001095048.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella loihica PV-4] gi|229890652|sp|A3QH41|MIAB_SHELP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|126639146|gb|ABO24789.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella loihica PV-4] Length = 474 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 194/447 (43%), Positives = 285/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ QGY ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDEYQGYTLTEEAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 LGR + LK+ + +L++ V GCVA EG+ I R+ V+++ GPQT +RLPE++E+ Sbjct: 63 LGRWKTLKD----KNPNLIIGVGGCVASQEGKAIKDRAQCVDLIFGPQTLHRLPEMIEQI 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + GK V+D + +KF+RL R G +AF++I EGC K+C+FCVVPYTRG E Sbjct: 119 QQGGKAVIDVSFPEIEKFDRLP-----EPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG D + CTF++LL ++ I G+ R Sbjct: 174 VSRPVDDVILEIAQLAEQGVREVNLLGQNVNAYRGATHDDDICTFAELLRYVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + + +I + D L+ +LHLPVQSGSD IL M R H A EY+ II R+ Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDLILTQMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGE+ DF TM L++ + + +FSF YS R GTP S++ + V Sbjct: 294 RKARPDIQISSDFIVGFPGESKQDFADTMKLIEDVQFDHSFSFIYSARPGTPASDLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 + K ERL LQ ++ +Q + ++ +G + +L+E K +L GR+ + V Sbjct: 354 SLDEKKERLAILQDRITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG + V I DV ++L G+ + Sbjct: 414 ADPKHIGSFVDVEIVDVFTNSLRGKFI 440 >gi|90414094|ref|ZP_01222077.1| putative 2-methylthioadenine synthetase [Photobacterium profundum 3TCK] gi|90324889|gb|EAS41417.1| putative 2-methylthioadenine synthetase [Photobacterium profundum 3TCK] Length = 474 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/449 (43%), Positives = 284/449 (63%), Gaps = 12/449 (2%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +P++ +K++GCQMN YDS +M D+ + G+E ++AD+++LNTC IREKA EKV+ Sbjct: 1 MPKKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEVPEEADVLLLNTCSIREKAQEKVF 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 LGR + LK + DL++ V GCVA EG+ I +R+P V+V+ GPQT +RLP++++ Sbjct: 61 HQLGRWKRLKEKK----PDLVIGVGGCVATQEGDSIRKRAPYVDVIFGPQTLHRLPQMIK 116 Query: 142 RARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 ++ V+D + +KF+ L R G TAF++I EGC K+CT+CVVPYTRG Sbjct: 117 NSQSNHGPVMDISFPEVEKFDNLP-----EPRADGATAFVSIMEGCSKYCTYCVVPYTRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E+SR + V+ E +L + GV E+ LLGQNVNA+RG DG+ TF++LL ++ I G+ Sbjct: 172 EEVSRPIDDVLYEIAQLAEQGVREVNLLGQNVNAFRGPTHDGDMATFAELLRLVAAIDGI 231 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP + +D +I + D L+ YLHLPVQSGSDRIL M R HT EY+ I Sbjct: 232 DRIRYTTSHPIEFTDDIIDVYTDTPELVNYLHLPVQSGSDRILTMMKRPHTVLEYKSKIR 291 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R VRPDI +SSDFIV FPGE+D DF+ TM L+ I + ++SF +SPR GTP ++ Sbjct: 292 KLRKVRPDITMSSDFIVAFPGESDQDFQDTMKLIRDIDFDISYSFVFSPRPGTPAADYPC 351 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439 + E VK ERL LQ+++ Q + + +L+E ++ +L GR+ + V Sbjct: 352 DIPEEVKKERLYELQQQINTQAMRHARQMLNTEQRILVEGPSRKNIMELRGRTENNRIVN 411 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L GELV Sbjct: 412 FEGSAELIGQFVDVNIIDVFTNSLRGELV 440 >gi|192361583|ref|YP_001982120.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cellvibrio japonicus Ueda107] gi|229890473|sp|B3PER6|MIAB_CELJU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|190687748|gb|ACE85426.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cellvibrio japonicus Ueda107] Length = 456 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 194/451 (43%), Positives = 287/451 (63%), Gaps = 17/451 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS RM D+ S + ++AD+I++NTC IREKA EK++ Sbjct: 9 KKLYIKTHGCQMNEYDSNRMRDLLGESHNMVATENPEEADVILINTCSIREKAQEKLFHE 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR +NLK K+ +L++ V GCVA EG I R+P V+++ GPQT +RLPE++E Sbjct: 69 LGRWKNLK----KQNPELIIGVGGCVASQEGAAIAERAPYVDLIFGPQTLHRLPEMMETK 124 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G VVD + +KF++L D GV+AF++I EGC K+CTFCVVPYTRG E Sbjct: 125 KSNGVVVVDISFPEIEKFDKLPQPDAD-----GVSAFVSIMEGCSKYCTFCVVPYTRGEE 179 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ V+ E L GV E+ LLGQNVNA+RG DG ++L+ ++ + G+ R Sbjct: 180 VSRPVADVMAEVIHLAKQGVREVNLLGQNVNAYRGAAADGTIVDLAELITYIAAVDGIDR 239 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D LI+ + + L+ +LHLPVQSGSDRIL +M R HT EY+ + RI Sbjct: 240 IRFTTSHPVEFTDALIEVYNQVPELVSHLHLPVQSGSDRILMAMKRGHTVLEYKSKLRRI 299 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + RP+I+ SSDFI+GFPGETD DF ATM L+ + + +FSF YSPR GTP +++ + Sbjct: 300 KKNRPNISFSSDFIIGFPGETDADFEATMKLIHDMEFDTSFSFIYSPRPGTPAADLPDDT 359 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E VK +RL LQ ++ +Q ++ + VG +L+ + K+ G+L GR+ + V+N Sbjct: 360 PEEVKKQRLAILQDRITQQAMAISRRMVGNTERILVSGYSKKDPGQLSGRTE--NNRVVN 417 Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELVV 469 + N IG V I + ++L G L+ Sbjct: 418 FRCDNPALIGKFADVLIEEALPNSLRGSLIA 448 >gi|76809108|ref|YP_332302.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia pseudomallei 1710b] gi|254261221|ref|ZP_04952275.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 1710a] gi|123600209|sp|Q3JVV1|MIAB_BURP1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|76578561|gb|ABA48036.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 1710b] gi|254219910|gb|EET09294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia pseudomallei 1710a] Length = 457 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 193/454 (42%), Positives = 292/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+R LK ++ DLL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ R Sbjct: 63 LGRVRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAIAAGSAEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + L+ + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RP++++S++ IVGFPGETD DF TM LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPNLSLSTNIIVGFPGETDADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLAD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439 +K +RL LQ + E + + +G++ +L+E K+ +L GR+ + V Sbjct: 354 DTPRELKLKRLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRVVN 413 Query: 440 LNSKNHN----IGDIIKVRITDVKISTLYGELVV 469 + + IG +I V+I +L GELV+ Sbjct: 414 FPAPSAAHPRLIGQMIDVKINHAYPHSLRGELVL 447 >gi|163857967|ref|YP_001632265.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella petrii DSM 12804] gi|163261695|emb|CAP43997.1| conserved hypothetical protein [Bordetella petrii] Length = 514 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/443 (44%), Positives = 289/443 (65%), Gaps = 13/443 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS +M D+ QG E ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 66 RKLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEDADVILFNTCSVREKAQEKVFSD 125 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+++LK K DL++ V GCVA EGE I++R+P V+VV GPQT +RLPEL+ R Sbjct: 126 LGRVQHLK----KLNPDLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPELIRRR 181 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G VD + +KF+ L R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 182 RASGASQVDISFPEIEKFDALPP-----PRIEGATAFVSIMEGCSKYCSFCVVPYTRGEE 236 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L D GV E+TLLGQNVNA+RG G GE F+ LL + EI G+ Sbjct: 237 VSRPFDDVLVEVADLADQGVKEVTLLGQNVNAYRGPMGDTGEIADFATLLEYVHEIPGIE 296 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP++M+ ++ A+ +L L+ +LHLPVQ+GSDR+L +M R +T E++ ++ R Sbjct: 297 RIRYTTSHPKEMTQRMVDAYANLPKLVSFLHLPVQAGSDRVLAAMKRGYTTLEFKSVVRR 356 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RP + +SSDFIVGFPGET++DF TM L++ +G+ +FSF YS R GTP +++++ Sbjct: 357 LRAARPGLTLSSDFIVGFPGETEEDFDKTMKLIEDVGFDTSFSFIYSRRPGTPAADLVDD 416 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440 + VK RL LQ + Q + A VG +L+E ++ +L+GR+ + V Sbjct: 417 TPQEVKLRRLQQLQALINAQAAAIAQAMVGTRQRLLVEGPSRRDPNELMGRTENNRIVNF 476 Query: 441 NSKNHNIGDIIKVRITDVKISTL 463 + IG ++ V ITD ++L Sbjct: 477 PAPARLIGQMVDVIITDAYPNSL 499 >gi|156973539|ref|YP_001444446.1| hypothetical protein VIBHAR_01230 [Vibrio harveyi ATCC BAA-1116] gi|229891025|sp|A7N1G9|MIAB_VIBHB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|156525133|gb|ABU70219.1| hypothetical protein VIBHAR_01230 [Vibrio harveyi ATCC BAA-1116] Length = 474 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 200/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I +R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QSDEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L D GV E+ LLGQNVNA+RG DGE C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDR+L M R HT EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRVLTMMKRPHTGIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGETD DF+ TM L+ + + +FSF +SPR GTP ++ + Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E VK ERL LQ+ + Q + ++ + VL+E K+ +L R+ + V Sbjct: 354 SEQVKKERLYELQQTVNTQAMRYSRQMLDTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GELV Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGELV 440 >gi|34499604|ref|NP_903819.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chromobacterium violaceum ATCC 12472] gi|81654199|sp|Q7NQI8|MIAB_CHRVO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|34105455|gb|AAQ61810.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 444 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 197/448 (43%), Positives = 287/448 (64%), Gaps = 18/448 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ S +G + ++ ++AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVYIKTFGCQMNEYDSDKMADVLGSAEGMVKTDNPEEADVILFNTCSVREKAQEKVFSD 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGRIR LK + DL++ V GCVA EG+ I++R+P V+VV GPQT +RLP+L+E R Sbjct: 62 LGRIRPLKEA----NPDLIIGVGGCVASQEGDAIVKRAPFVDVVFGPQTLHRLPDLIESR 117 Query: 143 ARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + G+ VD + +KF+ + + VDGG AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KQSGRSQVDISFPEIEKFDHIPPAKVDGG-------AAFVSIMEGCSKYCSFCVVPYTRG 170 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E+SR V+ E L GV EITLLGQNVNA+RG DGE F+ LL + E+ G+ Sbjct: 171 EEVSRPFEDVLTEIAGLAAQGVKEITLLGQNVNAYRGLMSDGEIADFALLLEYVHEVPGV 230 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHPR+ S +I + L L+ +LHLPVQSGSDR+L +M R +T EY+ II Sbjct: 231 ERIRFTTSHPREFSQRIIDCYAKLPKLVSHLHLPVQSGSDRVLMAMKRGYTGLEYKSIIR 290 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+ +SSDFI+GFPGET+ DF T+ LV + +F F YSPR GTP +N+ + Sbjct: 291 KLRAIRPDLCLSSDFIIGFPGETEADFEQTLKLVRDCEFDFSFVFIYSPRPGTPAANLPD 350 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 K RL L + + + + N + VG + VL+E K+ ++ + + V+ Sbjct: 351 DTPHAEKVRRLEALNEVIEAKGYAINQSMVGTVQRVLVENVSKKDATMLA-ARTANNRVV 409 Query: 441 NSKNHN--IGDIIKVRITDVKISTLYGE 466 N H +G +I+V+IT +L GE Sbjct: 410 NFAGHPRLLGRMIEVKITAAFPHSLAGE 437 >gi|299768718|ref|YP_003730744.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter sp. DR1] gi|298698806|gb|ADI89371.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter sp. DR1] Length = 483 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/455 (43%), Positives = 295/455 (64%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GCQMN YDS RM D+ S GY ++ ++AD++++NTC IREKA EKV+S Sbjct: 31 KKLYIETQGCQMNEYDSHRMADLLGDSHGYILTSNPNEADILLMNTCSIREKAQEKVFSE 90 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140 LGR R LK+ + DL++ V GCVA EG+ I +R+P V+++ GPQT +RLP++L Sbjct: 91 LGRWRKLKD----KNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQH 146 Query: 141 ----ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 E+ + K ++VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 147 NAQVEKPKKDKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EI+LLGQNVN +RG+ +G CTF +LL ++ Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI G+ RLRYTTSHP + SD LI+ + DL ++ +LHLPVQSGS+ +L++M R HT Y Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHLHLPVQSGSNDVLQAMKRNHTIDVY 321 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I ++R +RPD+ +SSDFI+GFPGETD++F T+ + + + ++SF YS R GTP Sbjct: 322 IDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 S++ + E VK ERL +QK +++ + DA +G+I VLIEK ++ L+G + Sbjct: 382 SDLPDTTPEQVKKERLAQVQKVIKQSSIEKTDAMLGKIERVLIEKVSDQDPNILIGTADN 441 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 + V +G ++ IT++K ++ +YGEL+ Sbjct: 442 TRLVTFVGDATWVGRFAEIEITEIKTLNFVYGELL 476 >gi|225024104|ref|ZP_03713296.1| hypothetical protein EIKCOROL_00972 [Eikenella corrodens ATCC 23834] gi|224943129|gb|EEG24338.1| hypothetical protein EIKCOROL_00972 [Eikenella corrodens ATCC 23834] Length = 441 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 195/450 (43%), Positives = 286/450 (63%), Gaps = 17/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ +++++GCQMN YDS +M + + G E+V D+AD+I+ NTC +REKA EKV+S Sbjct: 2 KKVYIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVAEPDNADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGRI+ +K ++ ++++ VAGCVA EG I+ R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRIKPIK----QKNPNVIIGVAGCVASQEGAAIIERAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + G VD + +KF+ L + VDGG +AF++I EGC K+C+FCVVPYTR Sbjct: 118 KETTGHSQVDISFPEIEKFDHLPPARVDGG-------SAFISIMEGCSKYCSFCVVPYTR 170 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR L V+ E L GV EI LLGQNVNA+RG+ +GE C F+ LL + EI G Sbjct: 171 GEEFSRPLGDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMDNGEICDFATLLRIVHEIPG 230 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + RLR+TTSHPR+ SD +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II Sbjct: 231 IERLRFTTSHPREFSDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSII 290 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ Sbjct: 291 RKLRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLP 350 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438 + K RL L + + + N +G + L+E K+ +L R+ + V Sbjct: 351 DDTPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVV 410 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 I ++++ IT+ +L GELV Sbjct: 411 NFTGDVSLINQMVEIEITEAFTFSLRGELV 440 >gi|77747710|ref|NP_779964.2| hypothetical protein PD1779 [Xylella fastidiosa Temecula1] gi|182682396|ref|YP_001830556.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xylella fastidiosa M23] gi|229891033|sp|B2I8U1|MIAB_XYLF2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229891222|sp|Q87AP4|MIAB_XYLFT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|182632506|gb|ACB93282.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Xylella fastidiosa M23] gi|307578676|gb|ADN62645.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 497 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 195/455 (42%), Positives = 286/455 (62%), Gaps = 22/455 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F+K++GCQMN YDS +M D+ + + E ++ ++AD+I++NTC IREKA EKV+S L Sbjct: 49 KLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINTCSIREKAQEKVFSQL 108 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR R LK + G D+++ V GCVA EGE I++R+P V++V GPQT +RLP+++ R Sbjct: 109 GRWRALKTN----GRDVIIGVGGCVASQEGETIVKRAPYVDLVFGPQTLHRLPDMIRARR 164 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R VD + +KF+ L R G +AF++I EGC K+C+FCVVPYTRG E+ Sbjct: 165 EQNRPQVDISFPEIEKFDHLPTP-----RAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEV 219 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-------KGLDGEKCTFSDL---LYS 253 SR V+ E L GV EI LLGQNVNA+RG + ++DL + + Sbjct: 220 SRPFEDVLTEIAHLATQGVREINLLGQNVNAYRGAMDPGPSNNTNPAPPPYADLGLLIRA 279 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 +++ + + R+R+TTSHP + SD L++A+ D+ L +LHLPVQSGSDRIL +M R +TA Sbjct: 280 IAQFESIGRIRFTTSHPLEFSDSLVEAYRDVPQLANHLHLPVQSGSDRILSAMKRGYTAL 339 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 E++ I ++R+VRPDI+ISSDFI+GFPGE+D DF+ TM L+ IG+ Q+FSF YS R GT Sbjct: 340 EFKSKIRKLRAVRPDISISSDFIIGFPGESDTDFQKTMQLIKDIGFDQSFSFIYSRRPGT 399 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432 P SN+ + + +K RL LQK + + +G + VL+E K+ +L G++ Sbjct: 400 PASNLEDHTPDEIKRTRLEHLQKHINAYAADISKRMIGTVQTVLVEGPSKKNPNELTGKT 459 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ V IG I V IT+ ++L G + Sbjct: 460 ENMRPVNFPGHPRLIGQFIDVHITEALTNSLRGRV 494 >gi|296157337|ref|ZP_06840173.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. Ch1-1] gi|295892673|gb|EFG72455.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia sp. Ch1-1] Length = 457 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 197/455 (43%), Positives = 293/455 (64%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G + ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + +L++ V GCVA EG I+ R+P V++V GPQT +RLP+++++ Sbjct: 63 LGRVRELKEA----NPNLIIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDKR 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G TAF++I EGC K+C++CVVPYTRG E Sbjct: 119 RESGRAQVDISFPEIEKFDHLPPA-----RVDGPTAFVSIMEGCSKYCSYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---DGEKCTFSDLLYSLSEIKG 259 +SR L V+ E L D GV E+TLLGQNVNA+RG GL E F+ L+ +++I G Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRG-GLTLGSSEIADFATLIEYVADIPG 232 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 233 IERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVI 292 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R++RPD+++S+D IVGFPGET++DF M LV ++ Y +FSF YSPR GTP +N+ Sbjct: 293 RKLRAIRPDLSLSTDMIVGFPGETEEDFDKMMTLVHEMKYDTSFSFIYSPRPGTPAANLH 352 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438 + VK RL LQ + E +D+ VG+I +L+E+ K+ +L GR+ + V Sbjct: 353 DDTPREVKLRRLQHLQATIEENVQRISDSMVGKIERILVERPARKDPNELAGRTENNRVV 412 Query: 439 ----VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + S IG ++ V+I +L GELV+ Sbjct: 413 NFPAPVASHARLIGQMVDVKIVKAYPHSLRGELVL 447 >gi|28057765|gb|AAO29613.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] Length = 475 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 195/455 (42%), Positives = 286/455 (62%), Gaps = 22/455 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F+K++GCQMN YDS +M D+ + + E ++ ++AD+I++NTC IREKA EKV+S L Sbjct: 27 KLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINTCSIREKAQEKVFSQL 86 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR R LK + G D+++ V GCVA EGE I++R+P V++V GPQT +RLP+++ R Sbjct: 87 GRWRALKTN----GRDVIIGVGGCVASQEGETIVKRAPYVDLVFGPQTLHRLPDMIRARR 142 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R VD + +KF+ L R G +AF++I EGC K+C+FCVVPYTRG E+ Sbjct: 143 EQNRPQVDISFPEIEKFDHLPTP-----RAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEV 197 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-------KGLDGEKCTFSDL---LYS 253 SR V+ E L GV EI LLGQNVNA+RG + ++DL + + Sbjct: 198 SRPFEDVLTEIAHLATQGVREINLLGQNVNAYRGAMDPGPSNNTNPAPPPYADLGLLIRA 257 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 +++ + + R+R+TTSHP + SD L++A+ D+ L +LHLPVQSGSDRIL +M R +TA Sbjct: 258 IAQFESIGRIRFTTSHPLEFSDSLVEAYRDVPQLANHLHLPVQSGSDRILSAMKRGYTAL 317 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 E++ I ++R+VRPDI+ISSDFI+GFPGE+D DF+ TM L+ IG+ Q+FSF YS R GT Sbjct: 318 EFKSKIRKLRAVRPDISISSDFIIGFPGESDTDFQKTMQLIKDIGFDQSFSFIYSRRPGT 377 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432 P SN+ + + +K RL LQK + + +G + VL+E K+ +L G++ Sbjct: 378 PASNLEDHTPDEIKRTRLEHLQKHINAYAADISKRMIGTVQTVLVEGPSKKNPNELTGKT 437 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ V IG I V IT+ ++L G + Sbjct: 438 ENMRPVNFPGHPRLIGQFIDVHITEALTNSLRGRV 472 >gi|217969294|ref|YP_002354528.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thauera sp. MZ1T] gi|217506621|gb|ACK53632.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thauera sp. MZ1T] Length = 454 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 195/459 (42%), Positives = 297/459 (64%), Gaps = 23/459 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS +M D+ + + + ++ ++AD+I+ NTC +REKA E+V+ Sbjct: 2 KKLYIRTFGCQMNEYDSDKMADVLGAHEELVKTDNPEEADVILFNTCSVREKAQERVFHD 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+R LK + L++ V GCVA EGE I++R+P V+VV GPQT +RLP L+ R Sbjct: 62 LGRVRLLKQKK----PGLIIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPSLIAAR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G+ VD + +KF+ + R G +AF++I EGC K+CTFCVVPYTRG E Sbjct: 118 KQSGRSQVDISFPEIEKFDAMPPA-----RVEGASAFVSIMEGCSKYCTFCVVPYTRGDE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCT----FSDLLYSLSE 256 +SR L V+ E L GV E+TLLGQNVNAWRG DGE+ F+ LL ++E Sbjct: 173 VSRPLEDVLAEIAGLAAQGVKEVTLLGQNVNAWRGVLSREDGEQGADVGDFAFLLECVAE 232 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I G+ R+RYTTSHPR+M+ LI + L L+ LHLPVQSGSDR+L +M R ++ E++ Sbjct: 233 IPGIERIRYTTSHPREMTQRLIDCYAKLPKLVSQLHLPVQSGSDRVLAAMKRGYSVLEFK 292 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++ ++R+ RPD++++SDFIVGFPGET++DF TM L+D +G+ +FSF YS R GTP + Sbjct: 293 SVVRKLRAARPDLSLTSDFIVGFPGETEEDFEKTMKLIDDVGFDGSFSFVYSSRPGTPAA 352 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPW 434 ++ + V + K L LQK++ EQ + ++A VG + +L+E K+ + +++GRS Sbjct: 353 DLEDPVAQETKLAWLARLQKRIDEQYQANSEAMVGTVQRILVEGAAKKNAEAEMMGRSDN 412 Query: 435 LQSVVLNS----KNHNIGDIIKVRITDVKISTLYGELVV 469 + V S ++ +G ++VRIT +L GE++ Sbjct: 413 NRVVNFPSDSPVRDRLVGQFVEVRITAALPHSLRGEILT 451 >gi|313669088|ref|YP_004049372.1| hypothetical protein NLA_18110 [Neisseria lactamica ST-640] gi|313006550|emb|CBN88014.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 442 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 195/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V DDAD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR+R LK ++ L++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVRPLK----EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETSGLSQVDISFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG+ +GE C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RMRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 + ++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LCAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N VG + L+E K+ +L R+ + V Sbjct: 353 TPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 I +I + IT+ +L G+ V Sbjct: 413 TGTPDMINQMIDLEITEAYTFSLRGKTV 440 >gi|213161683|ref|ZP_03347393.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 383 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 185/390 (47%), Positives = 265/390 (67%), Gaps = 13/390 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG TF+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDI ISSDFIVGFPGET DDF TM L+ + + ++SF +S R GTP ++M++ Sbjct: 293 LRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVG 411 V E K +RL LQ+++ +Q ++++ +G Sbjct: 353 VPEEEKKQRLYILQERINQQAMAWSRRMLG 382 >gi|171057275|ref|YP_001789624.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptothrix cholodnii SP-6] gi|229890558|sp|B1XYX5|MIAB_LEPCP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|170774720|gb|ACB32859.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptothrix cholodnii SP-6] Length = 469 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/452 (43%), Positives = 286/452 (63%), Gaps = 18/452 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMED-MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS +M D M ++GY + + ADLI+ NTC +REKA EKV+S Sbjct: 27 KKVYIRTFGCQMNEYDSDKMSDVMAAAEGYTPTDDPEQADLILFNTCSVREKAQEKVFSD 86 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR+++LK + L+ V GCVA EG I+ R+P V+VV GPQT +RLP++L +R Sbjct: 87 LGRVKHLKARGV------LIGVGGCVASQEGAAIIERAPYVDVVFGPQTLHRLPQMLAQR 140 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 AR G+ VD + +KF+ L + G AF++I EGC K+C++CVVPYTRG E Sbjct: 141 ARQGRPQVDISFPEIEKFDHLPPA-----KVDGAAAFVSIMEGCSKYCSYCVVPYTRGEE 195 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 SR +V+ E L D GV E+TLLGQNVNA+RG+ G + F+ LL + EI G+ Sbjct: 196 FSRPFDEVLTEVAGLADQGVKEVTLLGQNVNAYRGRMGDTSDIADFATLLEYVHEIPGIE 255 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP + + LI+A+ L L+ +LHLPVQ GSDRIL M R +T EY+ I + Sbjct: 256 RIRYTTSHPNEFTPALIEAYARLPKLVNHLHLPVQHGSDRILSGMKRGYTVLEYKSTIRK 315 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPDI++S+DFIVGFPGETDDD TM L+D IG+ +FSF +SPR GTP + + + Sbjct: 316 LRAIRPDISLSTDFIVGFPGETDDDHARTMKLIDDIGFDASFSFIFSPRPGTPAAALHDD 375 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440 VK RL LQ + + ++ VG + VL+E ++ +L+GR+ + V Sbjct: 376 TSYEVKLARLQQLQATIEDNVRRISERRVGTVQRVLVEGPSRRDPNELMGRTECNRIVNF 435 Query: 441 NSKNHN---IGDIIKVRITDVKISTLYGELVV 469 + + +G +I +RIT +L GE V+ Sbjct: 436 DGGPNAARLVGRMIDIRITLAYPHSLRGEPVL 467 >gi|329118626|ref|ZP_08247330.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria bacilliformis ATCC BAA-1200] gi|327465361|gb|EGF11642.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria bacilliformis ATCC BAA-1200] Length = 443 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 195/447 (43%), Positives = 280/447 (62%), Gaps = 13/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ F++++GCQMN YDS +M + + G E+V DDAD+I+ NTC +REKA EKV+S Sbjct: 2 KKVFIRTFGCQMNEYDSEKMLAVLEEEHGGIEQVAEPDDADIILFNTCSVREKAQEKVFS 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR++ LK K L++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ + Sbjct: 62 DLGRVKPLKEKNPK----LIIGVAGCVASQEGENIVKRAPYVDVVFGPQTLHRLPKMIAD 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G VD + +KF+ L R G +AF++I EGC K+C+FCVVPYTRG Sbjct: 118 KETSGYAQVDISFPEIEKFDHLPPA-----RVEGGSAFISIMEGCSKYCSFCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L+ V+ E L GV EI LLGQNVNA+RG DG C F+ LL + EI G+ Sbjct: 173 EFSRPLNDVLTEIAGLAQQGVKEINLLGQNVNAYRGAMDDGGICDFATLLRIVHEIPGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR+TTSHPR+ +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II + Sbjct: 233 RLRFTTSHPREFTDAIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + Sbjct: 293 LRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 K RL L + + + N +G + L+E K+ +L R+ + V Sbjct: 353 TPHAEKVRRLEALNEVIEAETARINQTMLGTVQRCLVEGISKKDPDQLQARTANNRVVNF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467 + I ++ + IT+ +L G L Sbjct: 413 TGGPNLINQMVDLEITEAFTFSLRGRL 439 >gi|262374162|ref|ZP_06067439.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter junii SH205] gi|262311173|gb|EEY92260.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter junii SH205] Length = 483 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 197/455 (43%), Positives = 293/455 (64%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GCQMN YDS RM D+ S GY + ++AD++++NTC IREKA EKV+S Sbjct: 31 KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTNPNEADILLMNTCSIREKAQEKVFSE 90 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 LGR R LK ++ DL++ V GCVA EG+ I +R+P V++V GPQT +RLP++L++ Sbjct: 91 LGRWRKLK----EQNPDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPQMLDQH 146 Query: 143 -ARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 A+ K ++VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 147 QAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EI+LLGQNVN +RG+ +G CTF +LL ++ Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI G+ RLRYTTSHP + SD LI+ + DL ++ +LHLPVQSGS+ +L++M R HT Y Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYRDLPQMVSHLHLPVQSGSNDVLQAMKRNHTIDVY 321 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I ++R VRPD+ +SSDFI+GFPGETD+ F T+ + + + ++SF YS R GTP Sbjct: 322 IDKIAKLRKVRPDMHLSSDFIIGFPGETDEHFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 S + + E VK +RL +Q+ +++ + DA +G+I VLIEK K+ L+G + Sbjct: 382 SELPDDTPEQVKKDRLAQVQQVIKQSSIDKTDAMLGKIERVLIEKVSDKDPNLLIGTADN 441 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 + V +G ++ IT++K ++ +YGEL+ Sbjct: 442 TRLVTFIGDAAWVGRFAEIEITEIKTLNLVYGELL 476 >gi|167835506|ref|ZP_02462389.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia thailandensis MSMB43] Length = 461 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/458 (42%), Positives = 294/458 (64%), Gaps = 22/458 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR+R LK ++ DLL+ V GCVA EG I+ R+P V++V GPQT +RLP++++ R Sbjct: 63 LGRVRELKEAK----PDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDAR 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RESGRAQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK---GLDG---EKCTFSDLLYSLSE 256 +SR L V+ E L D GV E+TLLGQNVNA+RGK L + F+ L+ +++ Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGKFGGALPAGAHDVADFATLIEYVAD 233 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I G+ R+RYTTSHP++ + L+ + + L+ +LHLPVQ GSDRIL +M R +T EY+ Sbjct: 234 IPGIERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYK 293 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +I ++R++RP++++S+D IVGFPGET+ DF TM LV ++ Y +FSF YSPR GTP + Sbjct: 294 SLIRKLRAIRPNLSLSTDIIVGFPGETEADFDKTMALVHEMSYDTSFSFIYSPRPGTPAA 353 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435 ++ + VK ERL LQ + E + + VG++ +L+E K+ +L GR+ Sbjct: 354 SLADDTPRGVKLERLQHLQATIEENVARISQSMVGRVERILVEGPSRKDPNELAGRTENN 413 Query: 436 QSV----VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + V L + + IG +I V+I +L GELV+ Sbjct: 414 RVVNFPAPLAAHSRLIGQMIDVKINHAYPHSLRGELVL 451 >gi|209694559|ref|YP_002262487.1| hypothetical protein VSAL_I0996 [Aliivibrio salmonicida LFI1238] gi|229890434|sp|B6EIN8|MIAB_ALISL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|208008510|emb|CAQ78681.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 474 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/447 (42%), Positives = 283/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE +AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLGAANGYELTEDPKEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR ++LK+ + DL++ V GCVA EG+ I +R+P V+V+ GPQT +RLP++++++ Sbjct: 63 LGRWKHLKDKK----PDLVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPQMIKQS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K V+D + +KF+ L + GV+AF++I EGC K+CT+CVVPYTRG E Sbjct: 119 LSNEKTVMDISFPEIEKFDNLP-----EPKADGVSAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L + GV E+ LLGQNVNA+RG DG+ C+F+DLL ++ I G+ R Sbjct: 174 VSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMYDGDICSFADLLRMVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + D ++ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPLEFGDDIVAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIV FPGE++ DF+ TM L+ + + ++SF +SPR GTP ++ + Sbjct: 294 RKARPDILISSDFIVAFPGESEKDFQDTMKLIKDVDFDMSYSFVFSPRPGTPAADYPCDI 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441 E K +RL LQ+++ Q F+ + + L+E K +L R+ + V Sbjct: 354 PEQTKKDRLAELQQQISFQSARFSRQMLNTELRALVEGPSKRNPMELRARTENNRVVNFT 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + + IT+ ++L G LV Sbjct: 414 GSPELIGQFVDLHITESFTNSLRGTLV 440 >gi|170693394|ref|ZP_02884553.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia graminis C4D1M] gi|170141549|gb|EDT09718.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia graminis C4D1M] Length = 461 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 194/454 (42%), Positives = 292/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G + ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + +L++ V GCVA EG I+ R+P V++V GPQT +RLP+++++ Sbjct: 63 LGRVRELKEA----NPNLIIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDKR 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RESGRAQVDISFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTVGSSEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGET++DF M LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMKYDTSFSFIYSPRPGTPAANLHD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 VK +RL LQ + E +D+ VG++ +L+E+ K+ +L GR+ + V Sbjct: 354 DTPREVKLKRLQHLQATIEENVQRISDSMVGKVERILVERPARKDPNELAGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L S G ++ V+I +L GELV+ Sbjct: 414 FPAPLASHARLTGQMVDVKIVKAYPHSLRGELVL 447 >gi|261211993|ref|ZP_05926279.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. RC341] gi|260838601|gb|EEX65252.1| tRNA-i(6)A37 methylthiotransferase [Vibrio sp. RC341] Length = 474 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 200/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QTTDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DGE C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGEICSFAELLRLVATIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIV FPGETD DF+ TM L+ + + +FSF +SPR GTP ++ + Sbjct: 294 RKARPDIQISSDFIVAFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E VK ERL LQ+++ Q + ++ +G +L+E K+ +L GR+ + V Sbjct: 354 PEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+I DV ++L GELV Sbjct: 414 GSPELIGQFVDVKIVDVFANSLRGELV 440 >gi|315127051|ref|YP_004069054.1| involved in methylthiolation of isopentenylated A37 derivatives in tRNA, Fe-S protein [Pseudoalteromonas sp. SM9913] gi|315015565|gb|ADT68903.1| involved in methylthiolation of isopentenylated A37 derivatives in tRNA, Fe-S protein [Pseudoalteromonas sp. SM9913] Length = 468 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 194/437 (44%), Positives = 281/437 (64%), Gaps = 13/437 (2%) Query: 36 MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ + GY+ DAD+I+LNTC IREKA EKV+ LGR + LK+ + Sbjct: 1 MNEYDSQKMADLLDATNGYQLTEEAADADVILLNTCSIREKAQEKVFHQLGRWKLLKDDK 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--GKRVVDT 152 DL++ V GCVA EG+ I +R+P V+V+ GPQT +RLPE++++ + G VVD Sbjct: 61 ----PDLIIGVGGCVASQEGDSIRQRAPFVDVIFGPQTLHRLPEMIKQVQGNKGSSVVDI 116 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 + +KF+RL + G +AF++I EGC K+CTFCVVPYTRG E+SR + V+ Sbjct: 117 SFPEIEKFDRLP-----EPKAEGPSAFVSIMEGCSKYCTFCVVPYTRGEEVSRPVDDVLL 171 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 E +L + GV E+ LLGQNVNA+RG DGE C FSDL+ ++ I G+ R+RYTTSHP + Sbjct: 172 EVAQLAEQGVREVNLLGQNVNAYRGDTHDGEICYFSDLIRLVAAIDGIDRIRYTTSHPVE 231 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 + +I A+ D+ L+ +LHLPVQSGSDR+L M R HTA EY+ I ++R +RP++++S Sbjct: 232 FTPDIIDAYADVPELVDHLHLPVQSGSDRVLNLMKRGHTALEYKSTIRKLRKIRPNLSMS 291 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 SDFI+GFPGE+ DF ATM+L++ IG+ +FSF YS R GTP +++ + V E K ERL Sbjct: 292 SDFIIGFPGESKADFEATMNLINDIGFDMSFSFIYSARPGTPAADLPDDVTEQEKKERLY 351 Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKNHNIGDII 451 LQ ++ + + +L+E K+ +L GR+ + V + IG + Sbjct: 352 LLQNRITQMAQQISRQMFDTEQRILVEGPSKKNPMELRGRTENNRVVNFVGPHTVIGQFV 411 Query: 452 KVRITDVKISTLYGELV 468 VRIT+ ++L G+L+ Sbjct: 412 DVRITEALPNSLRGDLI 428 >gi|332763335|gb|EGJ93575.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri K-671] Length = 461 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 195/437 (44%), Positives = 284/437 (64%), Gaps = 14/437 (3%) Query: 36 MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ LGR + LK Sbjct: 1 MNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQLGRWKLLK--- 57 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVDT 152 ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ R G R VVD Sbjct: 58 -EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVR-GDRSPVVDI 115 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG E+SR ++ Sbjct: 116 SFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILF 170 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 E +L GV E+ LLGQNVNAWRG+ DG +F+DLL ++ I G+ R+R+TTSHP + Sbjct: 171 EIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTTSHPIE 230 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 +D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++R+ RPDI IS Sbjct: 231 FTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDIQIS 290 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 SDFIVGFPGET +DF TM L+ + + ++SF +S R GTP ++M++ V E K +RL Sbjct: 291 SDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQRLY 350 Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDII 451 LQ+++ +Q ++++ +G +L+E ++ +L GR+ + V IG + Sbjct: 351 ILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNFEGTPDMIGKFV 410 Query: 452 KVRITDVKISTLYGELV 468 V ITDV ++L G++V Sbjct: 411 DVEITDVYPNSLRGKVV 427 >gi|311695357|gb|ADP98230.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [marine bacterium HP15] Length = 448 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 194/449 (43%), Positives = 287/449 (63%), Gaps = 19/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS RM D+ + + E +S DDAD+++LNTC IREKA EKV+ Sbjct: 3 KKLYIKTHGCQMNEYDSARMADLLKTGETVEMTDSPDDADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + ++++ V GCVA EG+ I+ R+P V++V GPQT +RLP+++ Sbjct: 63 LGRWKKLKSKK----PEMIIGVGGCVASQEGQAIIDRAPYVDMVFGPQTLHRLPDMITEV 118 Query: 144 RF---GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R G VVD + +KF+ L + G + G +AF++I EGC K+CTFCVVPYTRG Sbjct: 119 RAKGNGVGVVDVSFPEIEKFDNLP--EPGAD---GPSAFVSIMEGCSKYCTFCVVPYTRG 173 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E+SR V+ E L GV E+ LLGQNVNA+RG+ DG+ ++L+ ++ I G+ Sbjct: 174 EEVSRPADDVIAEVAHLASQGVREVNLLGQNVNAYRGETHDGDTMDLAELIELIATIDGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP + SD LI + + L+ +LHLPVQSGSDRIL +M R HTA EY+ + Sbjct: 234 DRIRYTTSHPVEFSDALIDVYERVPELVSHLHLPVQSGSDRILAAMKRGHTALEYKSKLR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R +RPDI+ SSDFI+GFPGET+ DF TM L++ IG+ +FSF YS R GTP S++ + Sbjct: 294 RLRKIRPDISFSSDFIIGFPGETEKDFEDTMKLINDIGFDMSFSFVYSARPGTPASDLPD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439 ++K +RL LQ +L + + + VG +L+ K+ G+ GR+ + + Sbjct: 354 DTPMDIKKQRLSILQDRLNQNVMDISRKMVGSTQRILVTGLSKKDPGEYAGRTE--NNRI 411 Query: 440 LNSKNHN---IGDIIKVRITDVKISTLYG 465 +N ++ N +G I V I + ++L G Sbjct: 412 VNFRHENPEVVGHFIDVNIVEAYPNSLRG 440 >gi|260773261|ref|ZP_05882177.1| tRNA-i(6)A37 methylthiotransferase [Vibrio metschnikovii CIP 69.14] gi|260612400|gb|EEX37603.1| tRNA-i(6)A37 methylthiotransferase [Vibrio metschnikovii CIP 69.14] Length = 474 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR +NLK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKNLKDKK----PGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQS 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D + +KF+RL + G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QSTDAPVMDISFPEIEKFDRLP-----EPKAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLYEIAQLAAQGVREVNLLGQNVNAYRGPMHDGTICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGE+D+DF+ATM L+ + + +FSF +SPR GTP ++ V Sbjct: 294 RKARPDIQISSDFIVGFPGESDNDFQATMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K ERL LQ+++ Q + ++ + +L+E K+ +L GR+ + V Sbjct: 354 SEETKKERLYELQQQINSQAMRYSRLMLDTEQRILVEGPSKKNLMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+I DV ++L GEL+ Sbjct: 414 GSPDLIGQFVDVKIVDVFSNSLRGELI 440 >gi|254490396|ref|ZP_05103585.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylophaga thiooxidans DMS010] gi|224464529|gb|EEF80789.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylophaga thiooxydans DMS010] Length = 446 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 188/447 (42%), Positives = 289/447 (64%), Gaps = 12/447 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++++GCQMN YDS +M ++ S E + ++AD+++LNTC IREKA EKV+ L Sbjct: 4 KLYIRTFGCQMNEYDSSKMAEVLADSHQLEPTDIPEEADVLLLNTCSIREKAQEKVFHQL 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + K+SR +L++ V GCVA EGE I +R+P V+++ GPQT +RLP +LE + Sbjct: 64 GRWKRWKDSR----PNLVIGVGGCVASQEGEAIRKRAPYVDLIFGPQTLHRLPAMLEEVK 119 Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 ++ +D + +KF+ L R G TAF++I EGC K+CTFCVVPYTRG E+ Sbjct: 120 ISRKPSIDISFPEIEKFDNLPA-----PRADGPTAFVSIMEGCSKYCTFCVVPYTRGEEV 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + ++ E R+L GV E+ LLGQNVNA++G+ + E + L++ ++ I+G+ R+ Sbjct: 175 SRPVGPILREIRQLAAQGVREVNLLGQNVNAYQGEIDEDETADLALLIHYVAAIEGIERI 234 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP + SD LI+A ++ L+ +LHLPVQSGSDRIL M R HTA +Y + I R++ Sbjct: 235 RFTTSHPVEFSDSLIEAFAEVPELVNHLHLPVQSGSDRILTMMKRGHTAKQYLEKIRRLK 294 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +RP++++SSDFI+GFP ET+ DF+ATMDL++++ + +FSF YS R GTP + ++ V Sbjct: 295 EIRPELSMSSDFIIGFPNETEADFQATMDLINEVEFDHSFSFIYSARPGTPAAAFVDSVP 354 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 E+VK ERL +Q +L E + + VG +L+E+ + + GR+ + V Sbjct: 355 EDVKKERLQIMQSRLWELEQMHAQSMVGTTQRILVERAAHRGDEDMAGRTENNRVVNFQG 414 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 IG + VRI + ++L GEL+ Sbjct: 415 DESLIGQFVDVRIEEAFSNSLRGELLT 441 >gi|186475181|ref|YP_001856651.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia phymatum STM815] gi|229890465|sp|B2JD88|MIAB_BURP8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|184191640|gb|ACC69605.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia phymatum STM815] Length = 456 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/454 (43%), Positives = 291/454 (64%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G + ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + +LL+ V GCVA EG I+ R+P V++V GPQT +RLP+++++ Sbjct: 63 LGRVRELKEA----NPNLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDQR 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RASGRPQVDITFPEIEKFDHLPPA-----RIDGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ +++I G+ Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGAMTLGATEIADFATLIEYVADIPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RPD+++S+D IVGFPGET++DF M LV + Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPDLSLSTDMIVGFPGETEEDFDKMMQLVHDMSYDTSFSFIYSPRPGTPAANLQD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439 VK RL LQ + E + A VG++ +L+E+ K+ +L GR+ + V Sbjct: 354 DTPREVKLRRLQHLQATIEENVQRISQAMVGKVERILVERPARKDPNELAGRTENNRVVN 413 Query: 440 LNS--KNHN--IGDIIKVRITDVKISTLYGELVV 469 + + H IG +I V+I +L GELV+ Sbjct: 414 FPAPVETHARLIGQMIDVKIVHAYPHSLRGELVM 447 >gi|149192272|ref|ZP_01870484.1| hypothetical protein VSAK1_11405 [Vibrio shilonii AK1] gi|148833887|gb|EDL50912.1| hypothetical protein VSAK1_11405 [Vibrio shilonii AK1] Length = 474 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/447 (44%), Positives = 288/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEDPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----DGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QSDEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L D GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPMHDGDICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDR+L M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRVLTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGETD DF+ TM L+ + + +FSF +SPR GTP ++ + Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K +RL LQ+ + Q + ++ + VL+E K+ +L R+ + V Sbjct: 354 PEQTKKDRLYELQQTVNSQAMRYSRQMLDTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GELV Sbjct: 414 GGAELIGQFVDVKITDVFANSLRGELV 440 >gi|296113655|ref|YP_003627593.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moraxella catarrhalis RH4] gi|295921350|gb|ADG61701.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moraxella catarrhalis RH4] gi|326559649|gb|EGE10063.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella catarrhalis 7169] gi|326560011|gb|EGE10406.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella catarrhalis 46P47B1] gi|326566929|gb|EGE17067.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella catarrhalis 12P80B1] gi|326572683|gb|EGE22672.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella catarrhalis CO72] gi|326575068|gb|EGE24997.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella catarrhalis O35E] Length = 489 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 197/474 (41%), Positives = 291/474 (61%), Gaps = 28/474 (5%) Query: 12 HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTC 70 H + + VP++ ++ + GCQMN YDS +M D+ S G N ++DAD++++NTC Sbjct: 23 HEIREADRDTAVPKKVYIVTQGCQMNEYDSQKMGDVLGSSHGMVITNDINDADVLIMNTC 82 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130 IREKA EKV+S LGR R LK ++ +L++ V GCVA EG+ I +R+P V++V GP Sbjct: 83 SIREKAQEKVFSELGRWRKLK----EKNPNLVIGVGGCVASQEGDNIQKRAPYVDMVFGP 138 Query: 131 QTYYRLPELLE--------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176 QT +RLPEL E + R G VVD + +KF+ L R G Sbjct: 139 QTLHRLPELYESTTNQAKTDMGQIPKNRIG--VVDVSFPSIEKFDFLP-----EPRVEGY 191 Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236 TAF++I EGC K+C+FCVVPYTRG E+SR L V+ E L + GV E+ LLGQNVN +R Sbjct: 192 TAFVSIMEGCSKYCSFCVVPYTRGEELSRPLDDVLAEIDSLAEQGVREVNLLGQNVNGYR 251 Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 G+ DG C FS+LL+ +S I G+ R+RYTTSHP + +D +I+A+ +D L+ +LHLP+Q Sbjct: 252 GEKDDGSICRFSELLHYVSYIDGIERIRYTTSHPLEFTDDIIEAYQSIDKLVSHLHLPIQ 311 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 SGS+++L +M R HT Y I ++R +RPD+ +SSDFI+GFPGETD+DF T+ Sbjct: 312 SGSNQVLAAMKRNHTVDVYMNQIAKLRKIRPDLHLSSDFIIGFPGETDEDFLQTLQFAKD 371 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416 + + ++SF YS R GTP S++ + V K +RL Q+ ++ +A VGQ + V Sbjct: 372 LDFDHSYSFIYSKRPGTPASDLPDDVSLETKKQRLAVFQELIKRSTFEKTEAMVGQTLRV 431 Query: 417 LIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD-VKISTLYGELV 468 L E+ + +G L G + +SV+ + +G + ++IT + + + GELV Sbjct: 432 LAEEPANRRQGYLHGTADNTRSVIFKADTDLLGKFVMIKITKAISMHLVEGELV 485 >gi|323495441|ref|ZP_08100518.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio brasiliensis LMG 20546] gi|323310364|gb|EGA63551.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio brasiliensis LMG 20546] Length = 474 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 200/447 (44%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QSDEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L D GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPMHDGDICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET D + TM L+ + + +FSF +SPR GTP ++ V Sbjct: 294 RKARPDIQISSDFIVGFPGETAKDHQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K ERL LQ+ + Q + ++ +G VL+E K+ +L R+ + V Sbjct: 354 PEQEKKERLYELQQTVNAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GELV Sbjct: 414 GNAELIGQFVDVKITDVFANSLRGELV 440 >gi|37679101|ref|NP_933710.1| 2-methylthioadenine synthetase [Vibrio vulnificus YJ016] gi|81758131|sp|Q7MN00|MIAB_VIBVY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|37197843|dbj|BAC93681.1| 2-methylthioadenine synthetase [Vibrio vulnificus YJ016] Length = 474 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/447 (44%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D + +KF+ L R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QSEDAPVMDISFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DGE C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLYEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HT EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGETD DF+ TM L+ + + +FSF +SPR GTP ++ + Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K ERL LQ+++ Q + ++ +G VL+E K+ +L R+ + V Sbjct: 354 SEETKKERLYELQQQINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GE+V Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGEIV 440 >gi|237747925|ref|ZP_04578405.1| tRNA modifying enzyme [Oxalobacter formigenes OXCC13] gi|229379287|gb|EEO29378.1| tRNA modifying enzyme [Oxalobacter formigenes OXCC13] Length = 461 Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 198/450 (44%), Positives = 287/450 (63%), Gaps = 14/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ + GY R + ++ADLI+LNTC +REKA EKV+S Sbjct: 16 KKVFIKTFGCQMNEYDSGKMADLLEVTDGYIRTDKAEEADLILLNTCSVREKAQEKVFSD 75 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR + ++ DL++ V+GCVA EGE I++R+P VN+V GPQT +RLP+++ E Sbjct: 76 LGR---FNKTLRRKNPDLIIGVSGCVASQEGEAIVKRAPYVNIVFGPQTLHRLPDMIHEY 132 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G +DT + +KF+ L R TA+++I EGC KFC++C+VPYTRG E Sbjct: 133 EKTGDAQIDTSFPEIEKFDHLPPA-----RVEMPTAYVSIMEGCSKFCSYCIVPYTRGAE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E L + GV EITLLGQNVNA+RG GE F+ L+ ++++I G+ R Sbjct: 188 VSRPLEDVLVEIIGLAEQGVKEITLLGQNVNAYRGAMAGGEIADFALLIETVADIPGIER 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHP++ + LI + + L+ +L+LP Q GSDRIL +M R +T EY+ II R+ Sbjct: 248 IRFVTSHPKEFTQRLIDVYERVPQLVSHLYLPAQHGSDRILAAMKRGYTVLEYKSIIRRL 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 +++RPD+ +SSDFIVGFPGETD DF A M L+D I + +FSF YSPR GTP + + + Sbjct: 308 KAIRPDLLVSSDFIVGFPGETDADFDAMMKLIDDIDFDNSFSFLYSPRPGTPAAALPIDI 367 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL- 440 +V+ +RL LQ ++ EQ N A VG+ VLIE + G++ GR+ + V + Sbjct: 368 PLDVRKDRLQRLQTRIEEQTRQHNMAMVGKTERVLIEGLSQRNPGQIQGRTENNRVVHIP 427 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG II V IT+ L G L Sbjct: 428 GGDDPKQWIGKIIDVDITETLNFALRGILT 457 >gi|126666981|ref|ZP_01737957.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter sp. ELB17] gi|126628697|gb|EAZ99318.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter sp. ELB17] Length = 448 Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 198/449 (44%), Positives = 284/449 (63%), Gaps = 19/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS RM D+ + E +S +DAD+++LNTC IREKA EKV+ Sbjct: 3 KKLFIKTHGCQMNEYDSSRMADLLKVGEAVEMTDSPEDADILLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR +NLK + K G L++ V GCVA EG+ I+ R+P V++V GPQT +RLP ++ Sbjct: 63 LGRWKNLKKN--KPG--LIIGVGGCVASQEGQAIIDRAPFVDMVFGPQTLHRLPAMITEV 118 Query: 144 RF---GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R G VVD + +KF+ L + G + G +AF++I EGC K+CTFCVVPYTRG Sbjct: 119 RAKGNGVGVVDVSFPEIEKFDNLP--EPGAD---GPSAFVSIMEGCSKYCTFCVVPYTRG 173 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E+SR V+ E L V EI LLGQNVNA+RG DG+ ++L+ ++ I G+ Sbjct: 174 EEVSRPADDVIAEVAHLASQNVREINLLGQNVNAYRGDTHDGDVMDLAELITLIATIDGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP + +D LI + + L+ +LHLPVQSGSDRIL +M R HTA EY+ + Sbjct: 234 DRIRYTTSHPVEFTDALIDVYEQVPELVSHLHLPVQSGSDRILSAMKRGHTALEYKSKLR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R +RPDI+ SSDFI+GFPGET+ DF TM L++ IG+ +FSF YS R GTP S++ + Sbjct: 294 RLRKIRPDISFSSDFIIGFPGETEKDFEDTMKLINDIGFDMSFSFIYSARPGTPASDLPD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439 + VK +RL LQ ++ + + + VG +L+ K+ G+ GR+ + + Sbjct: 354 DTEMAVKKQRLKILQDRINQTVMDISRKMVGTTQRILVTGLSKKDPGEFSGRTE--NNRI 411 Query: 440 LNSKNHN---IGDIIKVRITDVKISTLYG 465 +N ++ N IG I V I + ++L G Sbjct: 412 VNFRHENSAAIGHFIDVEIVEAYSNSLRG 440 >gi|318604777|emb|CBY26275.1| tRNA-i(6)A37 methylthiotransferase [Yersinia enterocolitica subsp. palearctica Y11] Length = 461 Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 195/436 (44%), Positives = 276/436 (63%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S LG + LK Sbjct: 1 MNEYDSSKMADLLASTHGYQLTEIPEEADLLLLNTCSIREKAQEKVFSLLGHWKLLK--- 57 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVVDTD 153 ++ +++ V GCVA EGE + +R+P V+V+ GPQT +RLPE++ + VVD Sbjct: 58 -EKNPGIIIGVGGCVASQEGEHLRQRAPCVDVIFGPQTLHRLPEMINHVQGTHSPVVDIS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E+SR ++ E Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSDDILFE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R+R+TTSHP + Sbjct: 172 IAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGIDRVRFTTSHPIEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++R RPDI ISS Sbjct: 232 TDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKLRQARPDIQISS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFI+GFPGET DF TM LV + + ++SF YSPR GTP +++ + V E K +RL Sbjct: 292 DFIIGFPGETQQDFEQTMKLVADVRFDTSYSFIYSPRPGTPAADLPDDVSEEEKKQRLHI 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ+++ +Q + + VG + +L+E ++ +L GR+ + V IG + Sbjct: 352 LQQRITQQAMEISREMVGTVQRILVEGTSRKNVMELAGRTENNRVVNFEGTPEMIGKFVD 411 Query: 453 VRITDVKISTLYGELV 468 V I DV S+L G L+ Sbjct: 412 VEIVDVYASSLRGILL 427 >gi|88798164|ref|ZP_01113750.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Reinekea sp. MED297] gi|88778940|gb|EAR10129.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Reinekea sp. MED297] Length = 452 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 193/453 (42%), Positives = 286/453 (63%), Gaps = 18/453 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS RM D+ S GYE ++ +DAD+I+LNTC IREKA EKV+ Sbjct: 3 KKLFIKTHGCQMNEYDSDRMADLLGESHGYELTDNENDADVILLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR ++LK+ + +L + V GCVA EG+ I +R+P V+++ GPQT +RLP +++ Sbjct: 63 LGRWKSLKD----KNPNLKIGVGGCVASQEGDAISQRAPHVDMIFGPQTLHRLPGMIDAT 118 Query: 144 RFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 VVD + +KF+ L + GV+AF+++ EGC K+CTFCVVPY Sbjct: 119 DAAATGSDKISVVDITFPEIEKFDHLPAP-----KSDGVSAFVSVMEGCSKYCTFCVVPY 173 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 TRG E+SR V+ E L GV EI LGQNVNA+RG DG + ++L+ ++I Sbjct: 174 TRGEEVSRPFDDVIAEVAHLAGQGVREINFLGQNVNAYRGARHDGGEADLAELITLAAQI 233 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 G+ R+R+TTSHP + ++ LI + D+ L+ +LHLPVQSGS+RIL +M R H EY Sbjct: 234 DGIDRIRFTTSHPVEFTESLIDVYNDVPELVSHLHLPVQSGSNRILAAMKRGHEVDEYID 293 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++RIR RPDI+ SSDFI+GFPGETD DF TM+L+ IG+ +FSF YS R GTP S+ Sbjct: 294 KMERIRLNRPDISFSSDFIIGFPGETDQDFEDTMNLIQTIGFDHSFSFVYSARPGTPASD 353 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQ 436 + ++ E+VK +RL LQ+++ +Q + VG +L+ + + L GR+ + Sbjct: 354 LPDETPESVKKQRLQILQQRITQQASQISRRMVGSTQIILVTGASERNPEDLYGRTENNR 413 Query: 437 SVVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468 + + + IG ++VRIT+ ++L GE++ Sbjct: 414 NTFFTCDDQSLIGKFVQVRITEAYANSLRGEII 446 >gi|187925302|ref|YP_001896944.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia phytofirmans PsJN] gi|229890466|sp|B2SYI5|MIAB_BURPP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|187716496|gb|ACD17720.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia phytofirmans PsJN] Length = 457 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 195/455 (42%), Positives = 293/455 (64%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G + ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + +L++ V GCVA EG I+ R+P V++V GPQT +RLP+++++ Sbjct: 63 LGRVRELKEA----NPNLIIGVGGCVASQEGAAIVSRAPYVDLVFGPQTLHRLPQMIDKR 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RESGRAQVDISFPEIEKFDHLPPA-----RVDGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---DGEKCTFSDLLYSLSEIKG 259 +SR L V+ E L D GV E+TLLGQNVNA+R GL E F+ L+ +++I G Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRA-GLTLGSTEIADFAQLIEYVADIPG 232 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 233 IERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVI 292 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R++RPD+++S+D IVGFPGET++DF M LV ++ Y +FSF YSPR GTP +N+ Sbjct: 293 RKLRAIRPDLSLSTDMIVGFPGETEEDFDKMMALVHEMKYDTSFSFIYSPRPGTPAANLH 352 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438 + VK +RL LQ + E +D+ VG+I +L+E+ K+ +L GR+ + V Sbjct: 353 DDTPREVKLKRLQHLQATIEENVQRISDSMVGKIERILVERPARKDPNELAGRTENNRVV 412 Query: 439 ----VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + S IG ++ V+I +L GELV+ Sbjct: 413 NFPAPIASHARLIGQMVDVKIVKAYPHSLRGELVL 447 >gi|149907590|ref|ZP_01896337.1| tRNA-i(6)A37 modification enzyme MiaB [Moritella sp. PE36] gi|149809260|gb|EDM69189.1| tRNA-i(6)A37 modification enzyme MiaB [Moritella sp. PE36] Length = 475 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 195/447 (43%), Positives = 282/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ ++ G+E ++ ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLNAENGFELTDNPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K L++ V GCVA EG I +R+PIVN+V GPQT +RLPE++ A Sbjct: 63 LGRWKKLK----KRNPKLIIGVGGCVASQEGAAIQKRAPIVNLVFGPQTLHRLPEMIVDA 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + GK+ +VD + +KF+RL R GV+AF++I EGC K+C+FCVVPYTRG E Sbjct: 119 QAGKKGLVDVSFPEIEKFDRLP-----EPRADGVSAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L + GV E+ LLGQN NA+RG DG+ C+F+DLL ++ I G+ R Sbjct: 174 VSRPLDDVLYEIAQLAEQGVREVNLLGQNANAFRGDMHDGDICSFADLLRYVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + + +I+ + D L+ +LHLPVQSGSDRIL M R HT EY+ +I ++ Sbjct: 234 IRYTTSHPIEFTSDIIEVYKDTPELVSHLHLPVQSGSDRILTLMKRAHTTLEYKSLIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RP + +SSDFI+GFPGE+ DF TM L++ I Y +FSF YS R GTP +++ + V Sbjct: 294 RKARPGLVMSSDFIIGFPGESKQDFADTMKLIEDIEYDISFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 K ERL LQ ++ + V +L+E K+ +L GR+ + V Sbjct: 354 SLEEKKERLKILQTRISQMSQKIGRDMVNTTQRILVEGPSKKNIMELTGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV +++ G + Sbjct: 414 GSPDLIGTFVDVDIVDVFPNSIRGVFI 440 >gi|262190517|ref|ZP_06048761.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae CT 5369-93] gi|262033590|gb|EEY52084.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae CT 5369-93] Length = 474 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 199/447 (44%), Positives = 290/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QTSDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGETD DF+ TM L+ + + +FSF +SPR GTP ++ ++ Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCEL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E VK ERL LQ+++ Q + ++ +G +L+E K+ +L GR+ + V Sbjct: 354 SEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+I DV ++L GEL+ Sbjct: 414 GSPDLIGQFVDVKIVDVFPNSLRGELL 440 >gi|326562493|gb|EGE12810.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella catarrhalis 103P14B1] gi|326568692|gb|EGE18763.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella catarrhalis BC7] gi|326568869|gb|EGE18939.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella catarrhalis BC8] Length = 489 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 197/474 (41%), Positives = 290/474 (61%), Gaps = 28/474 (5%) Query: 12 HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTC 70 H + + VP++ ++ + GCQMN YDS +M D+ S G N ++DAD++++NTC Sbjct: 23 HEIREADRDTAVPKKVYIVTQGCQMNEYDSQKMGDVLGSSHGMVITNDINDADVLIMNTC 82 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130 IREKA EKV+S LGR R LK ++ +L++ V GCVA EG+ I +R+P V++V GP Sbjct: 83 SIREKAQEKVFSELGRWRKLK----EKNPNLVIGVGGCVASQEGDNIQKRAPYVDMVFGP 138 Query: 131 QTYYRLPELLE--------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176 QT +RLPEL E + R G VVD + +KF+ L R G Sbjct: 139 QTLHRLPELYESTTNQAKTDMGQIPKNRIG--VVDVSFPSIEKFDFLP-----EPRVEGY 191 Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236 TAF++I EGC K+C+FCVVPYTRG E+SR L V+ E L + GV E+ LLGQNVN +R Sbjct: 192 TAFVSIMEGCSKYCSFCVVPYTRGEELSRPLDDVLAEIDSLAEQGVREVNLLGQNVNGYR 251 Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 G+ DG C FS+LL+ +S I G+ R+RYTTSHP + +D +I+A+ +D L+ +LHLP+Q Sbjct: 252 GEKDDGSICRFSELLHYVSYIDGIERIRYTTSHPLEFTDDIIEAYQSIDKLVSHLHLPIQ 311 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 SGS+++L +M R HT Y I ++R +RPD+ +SSDFI+GFPGETD+DF T+ Sbjct: 312 SGSNQVLAAMKRNHTVDVYMNQIAKLRKIRPDLHLSSDFIIGFPGETDEDFLQTLQFAKD 371 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416 + + ++SF YS R GTP S++ + V K +RL Q+ ++ A VGQ + V Sbjct: 372 LDFDHSYSFIYSKRPGTPASDLPDDVSLETKKQRLAVFQELIKRSTFDKTQAMVGQTLRV 431 Query: 417 LIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD-VKISTLYGELV 468 L E+ + +G L G + +SV+ + +G + ++IT + + + GELV Sbjct: 432 LAEEPANRRQGYLHGTADNTRSVIFKADTDLLGKFVMIKITKAISMHLVEGELV 485 >gi|78484818|ref|YP_390743.1| tRNA-i(6)A37 modification enzyme MiaB [Thiomicrospira crunogena XCL-2] gi|123741657|sp|Q31IF4|MIAB_THICR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|78363104|gb|ABB41069.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thiomicrospira crunogena XCL-2] Length = 477 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 188/457 (41%), Positives = 287/457 (62%), Gaps = 23/457 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 F+K+YGCQMN YDS RM + + G V + ++AD+++LNTC +REKA EKV+ LG Sbjct: 15 LFIKTYGCQMNEYDSDRMAKLLEKTYGLNLVETPEEADMLLLNTCSVREKAQEKVFDELG 74 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-- 143 R + K ++ + ++ V GCVA EG+ I +R+P+V+V+ GPQT +RLP ++E A Sbjct: 75 RWKKWKAAK----PNRVIGVGGCVASQEGDVIRKRAPLVDVIFGPQTLHRLPAMIEEALA 130 Query: 144 ---------RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193 + KR ++D + +KF+ L+ + GV+AF+++ EGC K+CTFC Sbjct: 131 LRTATEQDKKLKKRAIIDISFPEIEKFDNLAEPESN-----GVSAFVSVMEGCSKYCTFC 185 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 VVPYTRG E SR S V+ E L GV E+ LLGQNVNA+RG+ DGE + L+++ Sbjct: 186 VVPYTRGEEFSRPFSDVMAEIESLAKQGVREVNLLGQNVNAYRGEMPDGEMADLAVLIHA 245 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 + ++G+ R+R+TTSHP +M+ LI + ++ L+ +LHLP+QSGSDR+L M R H A Sbjct: 246 VRAVEGIDRIRFTTSHPNEMTQSLIDCYAEVPELVSHLHLPIQSGSDRVLAMMKRNHMAI 305 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 EY+ I +I+ +RPD+++S DFI+GFPGET DDF+ T+ LV ++ Y ++FSF YSPR GT Sbjct: 306 EYKATIRKIKKIRPDLSLSGDFIIGFPGETCDDFKETLALVKEMNYDRSFSFIYSPRPGT 365 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432 P +++ + V+ ++K RL LQ L EQ + ++ VG VL+E+ + ++ GR+ Sbjct: 366 PAASLPDDVELHMKKRRLQALQAMLNEQTAAISEGMVGTTQRVLVERLSRNSTNEVSGRT 425 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + V IG + V I + ++L G+LV Sbjct: 426 ENNRVVNFEGPPELIGQFVDVLIEEAYANSLKGKLVA 462 >gi|226951972|ref|ZP_03822436.1| tRNA-i(6)A37 modification enzyme MiaB [Acinetobacter sp. ATCC 27244] gi|294649236|ref|ZP_06726674.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter haemolyticus ATCC 19194] gi|226837310|gb|EEH69693.1| tRNA-i(6)A37 modification enzyme MiaB [Acinetobacter sp. ATCC 27244] gi|292824903|gb|EFF83668.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter haemolyticus ATCC 19194] Length = 483 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 197/455 (43%), Positives = 293/455 (64%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GCQMN YDS RM D+ S GY ++ ++AD++++NTC IREKA EKV+S Sbjct: 31 KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTDNPNEADILLMNTCSIREKAQEKVFSG 90 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 LGR R LK ++ DL++ V GCVA EG+ I +R+P V++V GPQT +RLP++L++ Sbjct: 91 LGRWRKLK----EKNPDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPQMLDQH 146 Query: 143 -ARFGK------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 A+ K ++VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 147 QAQVEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EI+LLGQNVN +RG+ +G CTF +LL ++ Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVA 261 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI G+ RLRYTTSHP + SD LI+ + DL ++ +LHLPVQSGS+ +L++M R HT Y Sbjct: 262 EIPGIGRLRYTTSHPLEFSDELIQCYRDLPQMVSHLHLPVQSGSNDVLQAMKRNHTIDVY 321 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I ++R VRPD+ +SSDFI+GFPGETD F T+ + + + ++SF YS R GTP Sbjct: 322 IDKIAKLRKVRPDMHLSSDFIIGFPGETDQHFAETLQFIKDLDFDHSYSFVYSKRPGTPA 381 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 S++ + E VK +RL +Q+ ++ + DA +G+I VLIEK K+ L+G + Sbjct: 382 SDLPDDTPEQVKKDRLAQVQEVIKRSSIDKTDAMLGKIERVLIEKVSDKDPNILIGTADN 441 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 + V +G ++ IT++K ++ +YGEL+ Sbjct: 442 TRLVTFIGDAAWVGRFAEIEITEIKTLNLVYGELL 476 >gi|27363745|ref|NP_759273.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio vulnificus CMCP6] gi|81449180|sp|Q8DFE8|MIAB_VIBVU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|27359861|gb|AAO08800.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Vibrio vulnificus CMCP6] Length = 474 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 197/447 (44%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D + +KF+ L R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QSEDAPVMDISFPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DGE C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLYEIAQLAEQGVREVNLLGQNVNAYRGPTHDGEICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HT EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGE+D DF+ TM L+ + + +FSF +SPR GTP ++ + Sbjct: 294 RKARPDIQISSDFIVGFPGESDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K ERL LQ+++ Q + ++ +G VL+E K+ +L R+ + V Sbjct: 354 SEETKKERLYELQQQINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GE+V Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGEIV 440 >gi|260774885|ref|ZP_05883786.1| tRNA-i(6)A37 methylthiotransferase [Vibrio coralliilyticus ATCC BAA-450] gi|260609140|gb|EEX35298.1| tRNA-i(6)A37 methylthiotransferase [Vibrio coralliilyticus ATCC BAA-450] Length = 474 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 197/447 (44%), Positives = 288/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----EGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QSNEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG +G+ C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHEGDICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HT EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGE+D D +ATM L+ + + +FSF +SPR GTP ++ + Sbjct: 294 RKARPDIQISSDFIVGFPGESDMDHQATMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K ERL LQ+ + Q + F+ +G VL+E K+ +L R+ + V Sbjct: 354 SEQTKKERLYELQQTVNAQAMRFSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GE+V Sbjct: 414 GNAELIGQFVDVKITDVFANSLRGEIV 440 >gi|91785150|ref|YP_560356.1| tRNA-i(6)A37modification enzyme MiaB [Burkholderia xenovorans LB400] gi|123168088|sp|Q13UD5|MIAB_BURXL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|91689104|gb|ABE32304.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia xenovorans LB400] Length = 457 Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 195/455 (42%), Positives = 292/455 (64%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G + ++ +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLGAAEGLVKTDTPEDADVILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + +L++ V GCVA EG I+ R+P V++V GPQT +RLP+++++ Sbjct: 63 LGRVRELKEA----NPNLIIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDKR 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RESGRAQVDISFPEIEKFDHLPPA-----RVDGPSAFVSIMEGCSKYCSYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---DGEKCTFSDLLYSLSEIKG 259 +SR L V+ E L D GV E+TLLGQNVNA+R GL E F+ L+ +++I G Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRA-GLTLGSTEIADFAQLIEYVADIPG 232 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+RYTTSHP++ + LI + + L+ +LHLPVQ GSDRIL +M R +T EY+ +I Sbjct: 233 IERIRYTTSHPKEFTQRLIDTYAKVPKLVSHLHLPVQHGSDRILMAMKRGYTVLEYKSVI 292 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R++RPD+++S+D IVGFPGET++DF M LV ++ Y +FSF YSPR GTP +N+ Sbjct: 293 RKLRAIRPDLSLSTDLIVGFPGETEEDFDKMMTLVHEMKYDTSFSFIYSPRPGTPAANLH 352 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438 + VK RL LQ + E +D+ VG+I +L+E+ K+ +L GR+ + V Sbjct: 353 DDTPREVKLRRLQHLQATIEENVQRISDSMVGKIERILVERPARKDPNELAGRTENNRVV 412 Query: 439 ----VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + S IG ++ V+I +L GELV+ Sbjct: 413 NFPAPVASHARLIGQMVDVKIVKAYPHSLRGELVL 447 >gi|110834795|ref|YP_693654.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Alcanivorax borkumensis SK2] gi|123345402|sp|Q0VN66|MIAB_ALCBS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|110647906|emb|CAL17382.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 445 Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 194/447 (43%), Positives = 287/447 (64%), Gaps = 17/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F++++GCQMN YDS RM D+ S G E ++ ++AD+++LNTC IREKA EKV+ Sbjct: 3 RKLFIQTHGCQMNEYDSTRMVDLLESSHGLEPTDNPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+++ D+++ V GCVA EG+ I R+P V+VV GPQT +RLP L+ +A Sbjct: 63 LGRWKKLKDAK----PDMIIGVGGCVASQEGDAIRDRAPYVDVVFGPQTLHRLPGLITQA 118 Query: 144 RFGKRV-VDTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + + +D + +KF+ L VDG +AF++I EGC K+CTFCVVPYTRG Sbjct: 119 ASTRELAIDVTFPEIEKFDNLPEPSVDGP-------SAFVSIMEGCSKYCTFCVVPYTRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E+SR + V+ E + L D GV E+ LLGQNVNA++G G DG+ +DL+ + +I G+ Sbjct: 172 EEVSRPVQPVLKEIQHLADMGVREVNLLGQNVNAYQGVGADGDTLDLADLIRLIRDIDGI 231 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP + S+ LI+ + D+ L+ +LHLPVQSGSDRIL M R H EY+ + Sbjct: 232 DRIRYTTSHPVEFSEALIQVYEDVPELVSHLHLPVQSGSDRILAMMKRNHMVLEYKSKLR 291 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +++ +RPDI+ SSDFI+GFPGETD DF TM+L+ IG+ +FSF YS R GTP +++ + Sbjct: 292 KLKRIRPDISFSSDFIIGFPGETDRDFEDTMNLIHDIGFDMSFSFIYSARPGTPAADLPD 351 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439 VD VK +RL LQ+++ + + VG +L++ K+ G+L GR+ + V Sbjct: 352 DVDMEVKKQRLAILQQRINQNVQDISRKMVGSTQRILVDGFSKKDPGQLKGRTENNRVVN 411 Query: 440 LNSKNHN-IGDIIKVRITDVKISTLYG 465 + + IG + V I ++L G Sbjct: 412 FQCDDTDLIGKFVDVTIAKAYSNSLLG 438 >gi|15640978|ref|NP_230609.1| hypothetical protein VC0962 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591016|ref|ZP_01678333.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|147675479|ref|YP_001216435.1| hypothetical protein VC0395_A0484 [Vibrio cholerae O395] gi|153820006|ref|ZP_01972673.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153827451|ref|ZP_01980118.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|183179699|ref|ZP_02957910.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|227081136|ref|YP_002809687.1| hypothetical protein VCM66_0918 [Vibrio cholerae M66-2] gi|229505438|ref|ZP_04394948.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae BX 330286] gi|229510892|ref|ZP_04400371.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae B33] gi|229512945|ref|ZP_04402411.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae TMA 21] gi|229518013|ref|ZP_04407457.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae RC9] gi|229523246|ref|ZP_04412653.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae TM 11079-80] gi|229525572|ref|ZP_04414977.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae bv. albensis VL426] gi|229529943|ref|ZP_04419333.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae 12129(1)] gi|229608457|ref|YP_002879105.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio cholerae MJ-1236] gi|254225710|ref|ZP_04919316.1| conserved hypothetical protein [Vibrio cholerae V51] gi|254285632|ref|ZP_04960596.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|254848093|ref|ZP_05237443.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255744745|ref|ZP_05418696.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholera CIRS 101] gi|262161121|ref|ZP_06030232.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae INDRE 91/1] gi|262168624|ref|ZP_06036319.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae RC27] gi|298498922|ref|ZP_07008729.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae MAK 757] gi|81545216|sp|Q9KTE0|MIAB_VIBCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229891023|sp|A5F2X6|MIAB_VIBC3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|9655421|gb|AAF94124.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547126|gb|EAX57258.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|125621718|gb|EAZ50046.1| conserved hypothetical protein [Vibrio cholerae V51] gi|126509457|gb|EAZ72051.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|146317362|gb|ABQ21901.1| conserved hypothetical protein [Vibrio cholerae O395] gi|149738628|gb|EDM52981.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|150424494|gb|EDN16431.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|183013110|gb|EDT88410.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|227009024|gb|ACP05236.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|227012779|gb|ACP08989.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229333717|gb|EEN99203.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae 12129(1)] gi|229339153|gb|EEO04170.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae bv. albensis VL426] gi|229339609|gb|EEO04624.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae TM 11079-80] gi|229344728|gb|EEO09702.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae RC9] gi|229349838|gb|EEO14792.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae TMA 21] gi|229350857|gb|EEO15798.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae B33] gi|229357661|gb|EEO22578.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae BX 330286] gi|229371112|gb|ACQ61535.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae MJ-1236] gi|254843798|gb|EET22212.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255737776|gb|EET93170.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholera CIRS 101] gi|262022742|gb|EEY41448.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae RC27] gi|262028871|gb|EEY47524.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae INDRE 91/1] gi|297543255|gb|EFH79305.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae MAK 757] gi|327483685|gb|AEA78092.1| tRNA-i(6)A37 methylthiotransferase [Vibrio cholerae LMA3894-4] Length = 474 Score = 367 bits (941), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 199/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QTSDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGETD DF+ TM L+ + + +FSF +SPR GTP ++ + Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E VK ERL LQ+++ Q + ++ +G +L+E K+ +L GR+ + V Sbjct: 354 SEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+I DV ++L GEL+ Sbjct: 414 GSPDLIGQFVDVKIVDVFPNSLRGELL 440 >gi|118602727|ref|YP_903942.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|229890637|sp|A1AX14|MIAB_RUTMC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|118567666|gb|ABL02471.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 444 Score = 367 bits (941), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 188/452 (41%), Positives = 284/452 (62%), Gaps = 16/452 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS ++ D+ S G + A++++LNTC IREKA EK++ Sbjct: 2 KKLYIRTFGCQMNEYDSNKIADVLNHSHGLVLTDDAASANVLLLNTCSIREKAQEKLFHQ 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK+ + +L++ V GCVA EGE IL R+P V+++ GPQT +RLP +L Sbjct: 62 LGRWRKLKD----KNSNLIIGVGGCVASQEGELILERAPYVDIIFGPQTLHRLPSMLNEV 117 Query: 144 RFG------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 K +D + +KF+ L + VTAF++I EGC K+CTFC+VPY Sbjct: 118 LTPTPGMSVKPSIDISFPEIEKFDHLP-----KPKTSSVTAFVSIMEGCSKYCTFCIVPY 172 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 TRG E+SR V++E + L GV E+ LLGQNVNA++G DGE + L+ ++I Sbjct: 173 TRGEEVSRPFIDVINEVKILAIQGVREVNLLGQNVNAYQGLMDDGEIADLALLINIAAQI 232 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 G+ R+RYTTSHP SD LI+A+ ++ L +LHLP+QSGSD+IL+ M R H EY+ Sbjct: 233 DGIKRIRYTTSHPTQFSDSLIEAYMEVPKLASHLHLPIQSGSDKILRLMKRGHMVIEYKS 292 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 I ++R +RPDI+ISSDFI+GFPGE + DF TM L+D+IG+ ++FSF YS R GT S+ Sbjct: 293 KIRKLRKIRPDISISSDFIIGFPGENEQDFLDTMTLIDEIGFDKSFSFIYSARPGTLASS 352 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 L+ VD +VK +RL +QK + + + + VG + ++L+E K++ L GR+ +++ Sbjct: 353 YLDDVDMDVKKQRLALVQKTIDKNTERISKSMVGSVQKILVENVAKKRDNLFGRTENMRN 412 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 IG I+ ++IT + ++L G L+ Sbjct: 413 THFKGDKSLIGQIVNIKITQGRGNSLVGNLIA 444 >gi|330811908|ref|YP_004356370.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380016|gb|AEA71366.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 442 Score = 367 bits (941), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 194/448 (43%), Positives = 281/448 (62%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + ++++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RSTKLPQVDVSFPEIEKFDHLP-----EPRIDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L ++GV E+TLLGQNVN +RG DG ++L+ ++ + G+ R Sbjct: 174 VSRPFDDVIAEIIHLAEHGVREVTLLGQNVNGYRGLTHDGRLADLAELIRVVAAVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD LI+AH ++ L+ +LHLPVQSGSDRIL +M R HTA EY+ + ++ Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSGSDRILAAMKRNHTALEYKSKLRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I ISSDFIVGFPGET+ DF+ TM L++ +G+ ++SF YS R GTP +++ + Sbjct: 294 RAAVPGICISSDFIVGFPGETEKDFQQTMKLIEDVGFDFSYSFVYSQRPGTPAADLADDT 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 E +K ERL LQ +L +Q + VG + +L+ + K+ G+L GR+ + V Sbjct: 354 PEELKKERLNALQHRLNQQGFEISRQMVGSVQRILVTDYSKKDPGELQGRTENNRIVNFR 413 Query: 442 SKNHN-IGDIIKVRITDVKISTLYGELV 468 IG V I + +L G L+ Sbjct: 414 CDTPALIGQFADVHIDAAQPHSLRGSLI 441 >gi|253997231|ref|YP_003049295.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylotenera mobilis JLW8] gi|253983910|gb|ACT48768.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylotenera mobilis JLW8] Length = 442 Score = 366 bits (940), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 196/450 (43%), Positives = 285/450 (63%), Gaps = 14/450 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P++ F+K++GCQMN YDS RM DM S G S DDAD+I+LNTC +REKA +KV+ Sbjct: 3 TPKKVFIKTFGCQMNEYDSSRMADMLSASDGMVETQSPDDADVILLNTCSVREKAEDKVF 62 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGR LK ++ +L++ V GCVA EG+ I++R+P V+VV GPQT +RLPE+++ Sbjct: 63 SHLGRFIPLK----EKNPNLVIGVGGCVASQEGDNIIKRAPYVDVVFGPQTLHRLPEMIK 118 Query: 142 RAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + G VD + +KF+ L R GV+AFL+I EGC K+C+FCVVPYTRG Sbjct: 119 SKQDSGTSQVDVSFPEIEKFDHLP-----PPRVEGVSAFLSIMEGCSKYCSFCVVPYTRG 173 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E+SR + ++ EA +L + GV EITLLGQNVNA+R + DG + + L+ +++EI + Sbjct: 174 EEVSRPFADILTEAVQLAEQGVKEITLLGQNVNAYRTE-YDGVESDLAMLIETIAEIPQI 232 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP +M++ LI + L LHLPVQ+GSDRIL +M R +TA +++ II Sbjct: 233 ERIRFTTSHPNEMNERLISCFATVPKLAAQLHLPVQAGSDRILMAMKRNYTALQFKSIIR 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++++ P++ +SDFIVGFPGE+D DF AT+ L+ +G+ +FSF YSPR GTP + + + Sbjct: 293 KLKAANPNLTFTSDFIVGFPGESDADFEATVKLMQDVGFDASFSFLYSPRPGTPAAFLKD 352 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439 + VK RL LQ Q + ++A +G VLIE K+ L G++ + V Sbjct: 353 DTSQEVKLARLDKLQTINEAQAKAISEAMLGTTQRVLIEGASWKDASLLAGKTDNNRVVD 412 Query: 440 LNSKNHNIGDIIKVRITDV-KISTLYGELV 468 + + + V+ITDV L GE+V Sbjct: 413 IAGDASLVHQFVNVKITDVSNPRRLIGEIV 442 >gi|283479139|emb|CAY75055.1| UPF0004 protein PA3980 [Erwinia pyrifoliae DSM 12163] Length = 461 Score = 366 bits (940), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 193/436 (44%), Positives = 277/436 (63%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ S GY +DAD+++LNTC IREKA EKV+ LGR + LK + Sbjct: 1 MNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFGLLGRWKKLKEA- 59 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153 D+++ V GCVA EG +I +R+ V++V GPQT +RLPE++ R K VVD Sbjct: 60 ---NPDVIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMINSVRGTKSPVVDVS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+R+ R G TAF++I EGC+K+CTFCVVPYTRG E+SR V+ E Sbjct: 117 FPEIEKFDRMP-----EPRANGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPADDVLFE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R+R+TTSHP + Sbjct: 172 VAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVATIDGIDRIRFTTSHPIEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D +I+ + D L+ +LHLPVQSG+DRIL M R HTA EY+ II ++ + RPDI ISS Sbjct: 232 TDDIIEVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRKLLAARPDIQISS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFI+GFPGE DF TM LV +I + ++SF YS R GTP +++ + V E K +RL Sbjct: 292 DFIIGFPGENQADFEQTMKLVGEINFDTSYSFIYSARPGTPAADLPDDVSEEEKKQRLYI 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ ++ +Q ++++ +G + +L+E ++ +L GR+ + V +IG + Sbjct: 352 LQDRISQQAMAWSRRKLGTVQRILVEGTSRKSVMELAGRTECNRVVNFEGAPEHIGKFVD 411 Query: 453 VRITDVKISTLYGELV 468 V ITDV ++L G L+ Sbjct: 412 VEITDVYANSLRGVLL 427 >gi|289209299|ref|YP_003461365.1| RNA modification enzyme, MiaB family [Thioalkalivibrio sp. K90mix] gi|288944930|gb|ADC72629.1| RNA modification enzyme, MiaB family [Thioalkalivibrio sp. K90mix] Length = 450 Score = 366 bits (940), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 197/447 (44%), Positives = 275/447 (61%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D G ER + + AD++++NTC IREKA EKV+S Sbjct: 3 RKVYIQTHGCQMNEYDSDRMLDALRELHGAERTDDPEQADVLLMNTCSIREKAQEKVFSL 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R +K R ++++ V GCVA EG+ + R+P V++V GPQT +RLP +++ Sbjct: 63 LGRWRQIKERR----PEVIIGVGGCVASQEGDALRERAPYVDLVFGPQTLHRLPAMIQSV 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VVD + +KF+RL + G TAF+++ EGC K+C+FCVVPYTRG E Sbjct: 119 RRERAPVVDISFPEIEKFDRLP-----EPKADGPTAFVSVMEGCSKYCSFCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR V+ E L GV EI LLGQNVNA+RG DG+ + L++ ++ + G+ R Sbjct: 174 ISRPFDDVIAEVVALAGQGVKEINLLGQNVNAYRGPMEDGDTADLALLIHYVAAVDGIER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + SD LI+A+ D L+ +LHLPVQSGSDRIL M R HT EY+ I R+ Sbjct: 234 IRFTTSHPVEFSDSLIQAYADEPKLVGHLHLPVQSGSDRILAQMKRGHTILEYKSKIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPD+ +SSDFIVGFPGETD D ATM L++++ + +FSF YS R GTP +++ + V Sbjct: 294 REARPDLDLSSDFIVGFPGETDADHAATMKLIEELHFDFSFSFIYSARPGTPAASLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441 K RL LQ + + N A VG I VL+E K G+L R+ + V Sbjct: 354 PLATKKARLAELQALIEQHGRERNQAMVGNIEPVLVEGPAKRNPGELAARTANNRIVNFA 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG +I V IT+ +L G V Sbjct: 414 GDPSLIGQMIPVEITEALAHSLRGRAV 440 >gi|297581341|ref|ZP_06943265.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297534657|gb|EFH73494.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 474 Score = 366 bits (939), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 199/447 (44%), Positives = 289/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAVNGYELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QTSDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGETD DF+ TM L+ + + +FSF +SPR GTP ++ + Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E VK ERL LQ+++ Q + ++ +G +L+E K+ +L GR+ + V Sbjct: 354 SEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+I DV ++L GEL+ Sbjct: 414 GSPDLIGQFVDVKIVDVFPNSLRGELL 440 >gi|91792176|ref|YP_561827.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella denitrificans OS217] gi|123357083|sp|Q12R22|MIAB_SHEDO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|91714178|gb|ABE54104.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella denitrificans OS217] Length = 474 Score = 366 bits (939), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 191/444 (43%), Positives = 285/444 (64%), Gaps = 12/444 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ QGY + +AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDEYQGYTLTDDATEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ K+ G L++ V GCVA EG+ I R+ V+++ GPQT +RLPE++++ Sbjct: 63 LGRWKTLKD---KKPG-LIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIDQV 118 Query: 144 RFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G++VV D + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 119 QRGEKVVIDVSFPEIEKFDRLP-----EPRADGPTAFVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++ E +L + GV E+ LLGQNVNA+RG D + CTF++LL ++ I G+ R Sbjct: 174 VSRPQDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDDQICTFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + + +I + D L+ +LHLPVQSGSDRIL M R H A EY+ II R+ Sbjct: 234 IRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTQMKRGHMAIEYKSIIRRL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R R I ISSDFI+GFPGE+ +DF TM L++ + + +FSF YS R GTP +++ + V Sbjct: 294 RKAREGIQISSDFIIGFPGESAEDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 + K +RL LQ ++ +Q + ++ +G + +L+E K +L GR+ + V Sbjct: 354 SDEEKKQRLAILQDRITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465 + + +IG + V I DV ++L G Sbjct: 414 APHTHIGSFVDVEIVDVYTNSLRG 437 >gi|255319762|ref|ZP_05360967.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter radioresistens SK82] gi|262380296|ref|ZP_06073450.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter radioresistens SH164] gi|255303081|gb|EET82293.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter radioresistens SK82] gi|262297742|gb|EEY85657.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter radioresistens SH164] Length = 485 Score = 366 bits (939), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 196/455 (43%), Positives = 291/455 (63%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GCQMN YDS RM D+ S GY ++ DAD++++NTC IREKA EKV+S Sbjct: 33 KKLYIETQGCQMNEYDSHRMADLLGDSHGYILTSNPADADILLMNTCSIREKAQEKVFSE 92 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140 LGR R LK+ + DL++ V GCVA EG+ I +R+P V++V GPQT +RLP++L Sbjct: 93 LGRWRKLKD----QNPDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPQMLDQH 148 Query: 141 ----ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 E+ + K ++VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 149 IDQLEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGYKAFVSIMEGCSKYCSFCVV 203 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EI LLGQNVN +RG+ +G CTF+DLL ++ Sbjct: 204 PYTRGEEVSRPLDDVLAEIAGLAEKGVREINLLGQNVNGYRGETFEGTICTFADLLRLVA 263 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI G+ R+RYTTSHP + +D LI+ + DL ++ +LHLPVQSGS+ +L++M R HT Y Sbjct: 264 EIPGIGRVRYTTSHPLEFNDDLIQCYRDLPQMVSHLHLPVQSGSNDVLQAMKRNHTIDVY 323 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + I ++R VRPD+ +SSDFI+GFPGETD +F T + ++ + ++SF YS R GTP Sbjct: 324 IEKIAKLRKVRPDMHLSSDFIIGFPGETDQNFEETYQFIQEMDFDHSYSFIYSKRPGTPA 383 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 S + + E VK ERL +Q+ +++ ++ +A G I VLIE ++ LVG + Sbjct: 384 SELADDTPEEVKKERLARVQQWIKQSSIAKTNAMQGTIQRVLIENISERDPNLLVGTADN 443 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 + V +G ++ IT++K ++ +YGEL+ Sbjct: 444 TRLVTFIGDPAWVGRFAEIEITEIKTLNLVYGELL 478 >gi|260767222|ref|ZP_05876163.1| tRNA-i(6)A37 methylthiotransferase [Vibrio furnissii CIP 102972] gi|260617730|gb|EEX42908.1| tRNA-i(6)A37 methylthiotransferase [Vibrio furnissii CIP 102972] gi|315180847|gb|ADT87761.1| 2-methylthioadenine synthetase [Vibrio furnissii NCTC 11218] Length = 474 Score = 365 bits (938), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 198/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNATNGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PGVVIGVGGCVATQEGDHIRDRAPFVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QSDDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGTICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HT EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGE+D DF+ TM L+ + + +FSF +SPR GTP ++ + Sbjct: 294 RKARPDIQISSDFIVGFPGESDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K ERL LQ+++ Q + F+ +G +L+E K+ +L GR+ + V Sbjct: 354 TEETKKERLYELQQQINAQAMRFSRLMMGTEQRILVEGPSKKNLMELRGRTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V I DV ++L GELV Sbjct: 414 GPAELIGQFVDVNIVDVFPNSLRGELV 440 >gi|304310522|ref|YP_003810120.1| 2-methylthioadenine synthetase [gamma proteobacterium HdN1] gi|301796255|emb|CBL44463.1| 2-methylthioadenine synthetase [gamma proteobacterium HdN1] Length = 445 Score = 365 bits (938), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 189/447 (42%), Positives = 287/447 (64%), Gaps = 17/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F++++GCQMN YDS RM D+ S + YER + +AD+I+LNTC +REKA EKV+ Sbjct: 3 KKLFIETHGCQMNEYDSARMADLLGSTEDYERTDDPAEADVILLNTCSVREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK L++ V GCVA EG IL+R+P V++V GPQT +R+PE++ Sbjct: 63 LGRWRKLKEVNPA----LVIGVGGCVASQEGSAILKRAPHVDMVFGPQTLHRIPEMMGAV 118 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + K VVD + +KF++L G AF+++ EGC K+C+FCVVPYTRG E Sbjct: 119 KMYHKPVVDVSFPEIEKFDKLPDPS-----VEGPKAFISVMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E R L GV E+ LLGQNVNA+RG+ GE ++L+ ++ + G+ R Sbjct: 174 VSRHFEDVMREVRHLETLGVREVNLLGQNVNAYRGENEHGEIVDLAELIEHIAALPGIGR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + SD L+ A+ + L+ +LHLP QSGSDRIL +M R HT +Y I ++ Sbjct: 234 IRYTTSHPMECSDALVDAYRRIPKLVSHLHLPAQSGSDRILAAMKRNHTRADYLAWITKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + RPD+ +SSDFI+GFPGET+DDF T+ L++++GY +FSF YSPR GTP +++ + + Sbjct: 294 KEARPDLCVSSDFIIGFPGETEDDFNDTLQLIEEVGYDTSFSFVYSPRPGTPAADLPDDM 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 + K RL LQ ++ + +S + VG + +L++ + K+ G+L GR+ + V+N Sbjct: 354 PDEEKKRRLALLQHRIIQNALSISRRMVGTVQTILVDGYSKKDPGQLQGRTE--NNRVVN 411 Query: 442 SKNHN---IGDIIKVRITDVKISTLYG 465 ++ + IG +K+ I + ++L G Sbjct: 412 FRHDDDGLIGKFVKIGIEEALPNSLRG 438 >gi|332530355|ref|ZP_08406300.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Hylemonella gracilis ATCC 19624] gi|332040166|gb|EGI76547.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Hylemonella gracilis ATCC 19624] Length = 463 Score = 365 bits (937), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 195/459 (42%), Positives = 283/459 (61%), Gaps = 34/459 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ +QGYE+ + ++ ADLI+ NTC +REKA EKV+S Sbjct: 18 KKVFIKTFGCQMNEYDSDKMADVLGAAQGYEKTDDVEQADLILFNTCSVREKAQEKVFSD 77 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+++LK +K G V GCVA EGE I+ R+P V+VV GPQT +RLPELL Sbjct: 78 LGRVQHLKAKGVKIG------VGGCVASQEGEAIIARAPYVDVVFGPQTLHRLPELLNAR 131 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +R VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 132 EATRRPQVDISFPEIEKFDHLPPA-----RTEGASAFVSIMEGCSKYCSYCVVPYTRGEE 186 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 + R L V+ E L GV EITLLGQNVNAW GLD F+ L+ +SE+ G+ R Sbjct: 187 VHRPLDDVLTEVAGLAAQGVKEITLLGQNVNAWVKDGLD-----FAGLIELVSEMPGIER 241 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP++ + LI+A+ + L+ +LHLPVQ GSDRIL +M R +TA EY+ + ++ Sbjct: 242 IRYTTSHPKEFTPRLIEAYARIPKLVSHLHLPVQHGSDRILMAMKRGYTALEYKSTVRKL 301 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPD+A+++D IVGFPGET+DD T+ L++ + + +FSF YSPR GTP +N+ + Sbjct: 302 RAARPDLALATDLIVGFPGETEDDHAKTLKLIEDMEFDNSFSFIYSPRPGTPAANLQDDT 361 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS--------- 432 +VK RL +Q + + VG +L+E K +L G++ Sbjct: 362 PHDVKLRRLQEVQALIEGNMRRLSQKLVGTTQRILVEGPSRKNPNELTGKTVCNRAVNFA 421 Query: 433 --PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 P +Q+ + + IG ++ V IT +L GE++ Sbjct: 422 MGPAMQA----APSRLIGQMVDVNITLAYPHSLRGEVLT 456 >gi|77359992|ref|YP_339567.1| involved in methylthiolation of isopentenylated A37 derivatives in tRNA, Fe-S protein [Pseudoalteromonas haloplanktis TAC125] gi|76874903|emb|CAI86124.1| involved in methylthiolation of isopentenylated A37 derivatives in tRNA, Fe-S protein [Pseudoalteromonas haloplanktis TAC125] Length = 469 Score = 365 bits (937), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 192/437 (43%), Positives = 279/437 (63%), Gaps = 13/437 (2%) Query: 36 MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M ++ + GY+ + DAD+I+LNTC IREKA EKV+ LGR + LK+ + Sbjct: 1 MNEYDSQKMAELLDATNGYQLTDDATDADVILLNTCSIREKAQEKVFHQLGRWKLLKDDK 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--FGKRVVDT 152 DL++ V GCVA EG+ I +R+P V+V+ GPQT +RLPE++++ + G VVD Sbjct: 61 ----PDLIIGVGGCVASQEGDSIRQRAPFVDVIFGPQTLHRLPEMIKQVQGDKGSSVVDI 116 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 + +KF+RL + G +AF++I EGC K+CTFCVVPYTRG E+SR + V+ Sbjct: 117 SFPEIEKFDRLP-----EPKADGPSAFVSIMEGCSKYCTFCVVPYTRGEEVSRPVDDVLL 171 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 E +L + V E+ LLGQNVNA+RG DGE C FSDL+ ++ I G+ R+RYTTSHP + Sbjct: 172 EIAQLAEQSVREVNLLGQNVNAYRGDTHDGEICYFSDLIRLIAAIDGIDRIRYTTSHPVE 231 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 + ++ + D+ L+ +LHLPVQSGSDRIL M R HTA EY+ I ++R +RP++++S Sbjct: 232 FTQDIVDVYADVPELVDHLHLPVQSGSDRILNLMKRGHTAIEYKSTIRKLRKIRPNLSMS 291 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 SDFI+GFPGET DDF ATM L+ +G+ +FSF YS R GTP +++ + V E K ERL Sbjct: 292 SDFIIGFPGETQDDFEATMKLISDVGFDMSFSFIYSARPGTPAADLPDDVTEQEKKERLY 351 Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKNHNIGDII 451 LQ ++ + + +L+E K+ +L GR+ + V + IG + Sbjct: 352 LLQNRITQMAQQISRQMFDTEQRILVEGPSKKNPMELRGRTENNRVVNFVGPHTVIGQFV 411 Query: 452 KVRITDVKISTLYGELV 468 VRIT+ ++L G+L+ Sbjct: 412 DVRITEALPNSLRGDLI 428 >gi|323499966|ref|ZP_08104924.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio sinaloensis DSM 21326] gi|323314983|gb|EGA68036.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio sinaloensis DSM 21326] Length = 474 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 198/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEDPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----DGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + ++D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QNDDAPIMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L D GV E+ LLGQNVNA+RG +G+ C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPTHEGDICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET D + TM L+ + + +FSF +SPR GTP ++ V Sbjct: 294 RKARPDIQISSDFIVGFPGETAKDHQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K ERL LQ+ + Q + ++ +G VL+E K+ +L R+ + V Sbjct: 354 PEQEKKERLYELQQTVNAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L GELV Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGELV 440 >gi|124265725|ref|YP_001019729.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Methylibium petroleiphilum PM1] gi|229890616|sp|A2SD55|MIAB_METPP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|124258500|gb|ABM93494.1| bifunctional enzyme involved in thiolation and methylation of tRNA [Methylibium petroleiphilum PM1] Length = 457 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 194/453 (42%), Positives = 280/453 (61%), Gaps = 19/453 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ ++GYE ++ ADLI+ NTC +REKA EKV+S Sbjct: 8 KKVFIKTFGCQMNEYDSDKMADVLRAAEGYEPTTDVEQADLILFNTCSVREKAQEKVFSD 67 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+++LK +K G V GCVA EG ++ R+P V+VV GPQT +RLPE+L R Sbjct: 68 LGRVKHLKARGVKIG------VGGCVASQEGAALIERAPYVDVVFGPQTLHRLPEMLARR 121 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +R VD + +KF+ L R G TAF++I EGC K+C++CVVPYTRG E Sbjct: 122 DAQQRPQVDISFPEIEKFDHLPPA-----RVDGATAFVSIMEGCSKYCSYCVVPYTRGEE 176 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SR V+ E L D GV E+TLLGQNVN +RG+ G E F+ LL ++EI G+ Sbjct: 177 VSRPFDDVLTEVASLADQGVKEVTLLGQNVNGYRGRMGDTAEIADFALLLEYVAEIPGIA 236 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHP + S LI + + L+ +LHLPVQ GSDRIL +M R +T+ EY+ I + Sbjct: 237 RIRYTTSHPNEFSQRLIDVYARVPQLVNHLHLPVQHGSDRILSAMKRGYTSLEYKSSIRK 296 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPDI++S+DFIVGFPGETDDD TM L++ +G+ +FSF YS R GTP + + + Sbjct: 297 LRAIRPDISLSTDFIVGFPGETDDDHARTMKLIEDVGFDHSFSFIYSARPGTPAAALHDD 356 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQ 436 +K RL +Q+ + + VG + +L+E + +L+GR+ + Sbjct: 357 APRELKLARLQQVQEAIEANGRRIGQSRVGTVQRILVEGPSRRPELNAGHELMGRTECNR 416 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 V G +I V IT+ +L GE+++ Sbjct: 417 IVNFAGPARLTGQLIDVTITEAYPHSLRGEVLL 449 >gi|89074960|ref|ZP_01161405.1| putative 2-methylthioadenine synthetase [Photobacterium sp. SKA34] gi|89049199|gb|EAR54763.1| putative 2-methylthioadenine synthetase [Photobacterium sp. SKA34] Length = 475 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 198/447 (44%), Positives = 285/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + G+E ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGFELTEIPEEADVVLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + L++ V GCVA EG+ I +R+P V+V+ GPQT +RLPE+++R+ Sbjct: 63 LGRWKKLKDKKPD----LVIGVGGCVATQEGDSIRKRAPYVDVIFGPQTLHRLPEMIKRS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K V+D + +KF+ L R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QSNEKTVMDISFPEVEKFDNLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L V+ E +L + GV E+ LLGQNVNA+RG DGE +F++LL ++ I G+ R Sbjct: 174 VSRPLDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEVASFAELLRLVAAIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHP + +D +I + D L+ YLHLPVQSGSDRIL M R HT EY+ I ++ Sbjct: 234 IRYTTSHPIEFTDDIIDVYTDTPELVNYLHLPVQSGSDRILTMMKRPHTVLEYKSKIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R VRPDI +SSDFIV FPGE+D DF TM L+ I + ++SF +SPR GTP ++ + Sbjct: 294 RKVRPDITMSSDFIVAFPGESDQDFEDTMKLIRDIDFDISYSFIFSPRPGTPAADYPCDL 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+VK ERL LQ+++ Q + + +L+E ++ +L GR+ + V Sbjct: 354 SEDVKKERLYALQQQINSQAMRHARQMLDTEQRILVEGPSRKNVMELRGRTENNRIVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+I DV ++L GELV Sbjct: 414 GSADLIGQFVDVKIVDVFTNSLRGELV 440 >gi|90022940|ref|YP_528767.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Saccharophagus degradans 2-40] gi|122995883|sp|Q21FH4|MIAB_SACD2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|89952540|gb|ABD82555.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Saccharophagus degradans 2-40] Length = 454 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 183/411 (44%), Positives = 274/411 (66%), Gaps = 13/411 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ S ++ ++AD++++NTC IREKA EK++ Sbjct: 11 KKLYIQTHGCQMNEYDSSRMRDLLGASHDMVPTDNPEEADVLLVNTCSIREKAQEKLFHQ 70 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR ++LK ++ DL++ V GCVA EG+ I +R+P V+++ GPQT +RLPE++E Sbjct: 71 LGRWKHLKEAK----PDLVIGVGGCVASQEGDAISKRAPFVDLIFGPQTLHRLPEMIETP 126 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G VVD + +KF+ L + G TAF+++ EGC K+CTFCVVPYTRG E Sbjct: 127 RENGAVVVDISFPEIEKFDNLPEPEAD-----GATAFVSVMEGCSKYCTFCVVPYTRGEE 181 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L GV E+ LLGQNVNA+R GE ++L+ ++++I G+ R Sbjct: 182 VSRPAVDVLREVTHLASQGVREVNLLGQNVNAYRDDS-SGEVIDLAELIAAVADIDGIDR 240 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + ++ LI+A+ ++ L+ +LHLPVQSGSDRIL +M R HT EY+ + +I Sbjct: 241 IRFTTSHPMEFTESLIQAYAEIPELVSHLHLPVQSGSDRILSAMKRGHTCLEYKSKLRKI 300 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R++RPDI+ SSDFI+GFPGET+ DF ATM L++ IG+ +FSF YSPR GTP +++ + Sbjct: 301 RALRPDISFSSDFIIGFPGETEADFAATMKLIEDIGFDNSFSFIYSPRPGTPAADLPDDT 360 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432 E VK +RL LQ ++ +Q + VG VL+ + K+ G+L GR+ Sbjct: 361 PEQVKKDRLKILQTRIIQQAQEISRRMVGNTERVLVTGYSKKDPGQLSGRT 411 >gi|238028582|ref|YP_002912813.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Burkholderia glumae BGR1] gi|237877776|gb|ACR30109.1| TRNA-i(6)A37 thiotransferase enzyme MiaB [Burkholderia glumae BGR1] Length = 457 Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 196/454 (43%), Positives = 290/454 (63%), Gaps = 18/454 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +VK++GCQMN YDS +M D+ ++G E+ + +DAD+I+ NTC +REKA EKV+S Sbjct: 3 KKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDRPEDADVILFNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK + K G L++ V GCVA EG I+ R+P V++V GPQT +RLP++++ Sbjct: 63 LGRVRELKEA--KPG--LIIGVGGCVASQEGAAIVARAPYVDLVFGPQTLHRLPKMIDAR 118 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ VD + +KF+ L R G +AF++I EGC K+C++CVVPYTRG E Sbjct: 119 RASGRSQVDITFPEIEKFDHLPPA-----RVEGPSAFVSIMEGCSKYCSYCVVPYTRGDE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 +SR L V+ E L D GV E+TLLGQNVNA+RG G E F+ L+ ++++ G+ Sbjct: 174 VSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGSTEIADFATLIEYVADLPGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYTTSHP++ + L++ + + L+ +LHLPVQ GSDR+L +M R +T EY+ +I Sbjct: 234 ERIRYTTSHPKEFTQRLLEVYARVPKLVNHLHLPVQHGSDRVLMAMKRGYTVLEYKSLIR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R++RP +++S+D IVGFPGET+ DF TM LV ++ Y +FSF YSPR GTP +N+ + Sbjct: 294 KLRAIRPGLSLSTDIIVGFPGETEADFDKTMALVHEMRYDTSFSFIYSPRPGTPAANLHD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV- 438 VK +RL LQ + E + + VG + +L+E K+ +L GR+ + V Sbjct: 354 DTPREVKLKRLQHLQATIEENVAHISASMVGGVERILVEGPSRKDPNELAGRTENNRVVN 413 Query: 439 ---VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L S IG +I VRI +L GELV+ Sbjct: 414 FPAPLASHARLIGQMIDVRINHAYPHSLRGELVL 447 >gi|326796263|ref|YP_004314083.1| (dimethylallyl)adenosine tRNA methylthiotransferase miaB [Marinomonas mediterranea MMB-1] gi|326547027|gb|ADZ92247.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Marinomonas mediterranea MMB-1] Length = 450 Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 189/447 (42%), Positives = 285/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F++++GCQMN YDS RM D+ S E + ++AD+++LNTC IREKA +KVY Sbjct: 3 KKLFIQTHGCQMNEYDSSRMADLLGDSHEMEITENAEEADVLLLNTCSIREKAQDKVYHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK + DL++ V GCVA EG+ I +R+ V+++ GPQT ++LPE+++ A Sbjct: 63 LGRWKKLK----AKNPDLVIGVGGCVASQEGDNIRKRAKHVDMIFGPQTLHKLPEMVDAA 118 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D + +KF+ L R G AF+++ EGC K+CTFCVVPYTRG E+ Sbjct: 119 ATHIPITDVTFPEIEKFDHLPAP-----RVEGAEAFVSVMEGCSKYCTFCVVPYTRGEEV 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR V+ E +L + GV EI LLGQNVNA+RG+ DG++ +D++++++ I+G+ R+ Sbjct: 174 SRPYEDVLKEVAQLSEQGVREIHLLGQNVNAYRGETQDGDEADLADIIHAIARIEGVERI 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP + +D LI+A L+ +LHLPVQSG++ +L +M R H Y I+RI+ Sbjct: 234 RFTTSHPVEFTDSLIEAFRTEPKLVSHLHLPVQSGANNVLSAMKRGHDRQYYIDKINRIK 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 RP I++SSDFI+GFPGETDDDF TM+L+ +IG+ +FSF YS R GTP S++ + Sbjct: 294 DARPGISLSSDFIIGFPGETDDDFIDTMNLIQEIGFDHSFSFVYSQRPGTPASDLEDDTP 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442 E +K ERL LQ+++ +Q + VG I +L+ + ++ G+L GR+ + V + Sbjct: 354 EELKKERLAILQRRISQQAYDISLNMVGNIERILVSGYSPRDPGQLQGRTENNRIVNFRA 413 Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468 + IG V ITD ++L GEL Sbjct: 414 DDPKLIGKFADVVITDAYPNSLLGELA 440 >gi|262277765|ref|ZP_06055558.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [alpha proteobacterium HIMB114] gi|262224868|gb|EEY75327.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [alpha proteobacterium HIMB114] Length = 435 Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 186/445 (41%), Positives = 286/445 (64%), Gaps = 14/445 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++K++GCQMN YDS ++ D+ S Y++++ +D+AD + NTCHIREKA +KVYS + Sbjct: 4 KKFYIKTFGCQMNEYDSNKISDLMNSIAYQKIDKIDEADCFIFNTCHIREKATQKVYSDI 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G+I+ K+ + V+AGCVAQAE + +S V++VVGPQ Y++LP L++ + Sbjct: 64 GKIK----KIYKDKKKPIFVLAGCVAQAESSMVFEKSDYVDIVVGPQAYHKLPYLIKSFK 119 Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + R V+T+ V+ KF+ ++ N K +++F+TIQEGCDKFC FCVVPYTRG E Sbjct: 120 SNRQRSVETELDVDGKFD---VLKNLKNTKSKISSFVTIQEGCDKFCKFCVVPYTRGPEF 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++++DE L DNG EI LLGQNV+A++ + + + L+ +++I + R+ Sbjct: 177 SRDHNKILDEILSLTDNGTKEIVLLGQNVSAYKNNDI-----SLARLIKKIAKINNVKRI 231 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D LI G+ LMP LHLPVQSGSD+ILK MNR HT +Y +I++ R Sbjct: 232 RFTTSHPNDFDQELISLFGEEPKLMPQLHLPVQSGSDKILKLMNRNHTRSDYLNLIEKFR 291 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + DI SSDFIVGFPGET++D T++LV ++ ++ ++SF YS R GTP +N L ++D Sbjct: 292 KEKSDIQFSSDFIVGFPGETNEDHLDTINLVKEVKFSLSYSFIYSQRPGTPATN-LSELD 350 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 N+ +RL LQ L +QQ+ FN + + VL E + + + GR+ ++ V + + Sbjct: 351 NNISQKRLEELQGLLFKQQIEFNHSMINHENSVLFENKTQNEEQFFGRNQYMTPVFIKNT 410 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 G+I K+ I + + L+G + Sbjct: 411 AIKAGEIKKIFIENANRNNLFGRIA 435 >gi|307610039|emb|CBW99573.1| hypothetical protein LPW_13431 [Legionella pneumophila 130b] Length = 434 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 195/436 (44%), Positives = 277/436 (63%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M ++ + S G + + ++DAD+I+LNTC IREKA EKV+S LG+ R K Sbjct: 1 MNEYDSSKMAEVLYASHGLVKTDQVEDADVILLNTCSIREKAQEKVFSQLGQWREYK--- 57 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTD 153 + +L+ V GCVA EG +I++R+P V++V GPQT +RLP LL ER K VVD Sbjct: 58 -AKNPHVLIGVGGCVASQEGSDIIKRAPFVDIVFGPQTLHRLPALLNERLEKNKSVVDIS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+ L R G TAF++I EGC K+C+FCVVPYTRG EISR V+ E Sbjct: 117 FPEIEKFDHLPA-----PRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEEISRPFDDVLAE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L GV EI LLGQNVN +RG +G+ + L++ ++ I G+ R+R+TTSHP Sbjct: 172 CYQLASQGVREINLLGQNVNDYRGIMDNGDIADLALLIHYIAAIDGIGRIRFTTSHPLAF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 S+ LI A+ ++ L +LHLPVQSGSDRIL M R +TA E++ I ++R +RPDI +S+ Sbjct: 232 SENLINAYAEVPELANHLHLPVQSGSDRILSLMKRGYTALEFKSKIRKLRKIRPDIRLST 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 D IVGFPGETD DF+ TMDLV +IG+ +FSF YSPR GTP +N+ + VK +RL Sbjct: 292 DIIVGFPGETDKDFQDTMDLVHEIGFDTSFSFIYSPRPGTPAANLPDDTPMEVKKQRLQI 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ +L ++++ +G ++L+ K+ +L GR+ + V + H IG I Sbjct: 352 LQNRLLMNAARYSESMIGSKQKILVTGFSKKSSQQLSGRTECNRVVNFDGPPHLIGQFID 411 Query: 453 VRITDVKISTLYGELV 468 V+I+D ++L G L+ Sbjct: 412 VQISDALPNSLRGRLL 427 >gi|146329852|ref|YP_001210121.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dichelobacter nodosus VCS1703A] gi|229890515|sp|A5EXA7|MIAB_DICNV RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|146233322|gb|ABQ14300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dichelobacter nodosus VCS1703A] Length = 456 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 197/447 (44%), Positives = 285/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + ++++YGCQMN YDS +M + S G V + ++AD+++LNTC +REKA EKV+S Sbjct: 6 KHVYIETYGCQMNEYDSSKMLAVLKNSHGITPVATPEEADVLLLNTCSVREKAQEKVFSQ 65 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR ++LK + L++ V GCVA EGE I RR+P V+VV GPQT +RLP L+E A Sbjct: 66 LGRWKSLKERK----PHLIIGVGGCVASQEGEMIRRRAPEVDVVFGPQTLHRLPNLIEEA 121 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + VVD + +KF+ L R G TA++++ EGC K+CT+CVVPYTRG E Sbjct: 122 QRSRGGVVDVSFPEIEKFDHLP-----EPRAEGPTAYVSVMEGCSKYCTYCVVPYTRGAE 176 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR V+ E L GV EI LLGQNVNA+RG DG + L+ ++ I + R Sbjct: 177 ISRPFDDVLAECATLAAQGVREINLLGQNVNAYRGAMHDGTIADLALLIEYVAAIPNIGR 236 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + SD LI+ + + L+ +LHLPVQSGS+RIL M R + EY++ + +I Sbjct: 237 IRFTTSHPSEFSDALIETYRRVPKLVSHLHLPVQSGSNRILALMKRDYKVAEYQEKLAKI 296 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R++RPDI+ SSDFIVGFPGE ++DF+ATMDL++ + + ++SF YS R GTP S M ++V Sbjct: 297 RAIRPDISFSSDFIVGFPGEEEEDFQATMDLIEAVFFDTSYSFIYSQRPGTPASTMPDRV 356 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441 VK ERL LQ ++ E S ++A VG VL+++ ++ + V GR+ + V + Sbjct: 357 PLTVKKERLARLQARILEMAASISEAMVGTEQWVLVDRLSRKSEREVSGRTENNRVVNFS 416 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + IG KV+IT ++L G L+ Sbjct: 417 APASLIGRFAKVQITAAYKNSLRGRLI 443 >gi|212636644|ref|YP_002313169.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella piezotolerans WP3] gi|212558128|gb|ACJ30582.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella piezotolerans WP3] Length = 462 Score = 363 bits (932), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 195/436 (44%), Positives = 278/436 (63%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ +GYE + ++AD+++LNTC IREKA EKV+ LGR + LK+ Sbjct: 1 MNEYDSSKMADLLDEYEGYELTDEAEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKD-- 58 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153 K+ G L++ V GCVA EG+ I R+ V+++ GPQT +RLPE+L++ + GK+ V+D Sbjct: 59 -KKPG-LIIGVGGCVASQEGKAIKERAQCVDLIFGPQTLHRLPEMLDQIKDGKKAVIDVS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+RL R G +A+++I EGC K+C+FCVVPYTRG E+SR L ++ E Sbjct: 117 FPEIEKFDRLP-----EPRADGPSAYVSIMEGCSKYCSFCVVPYTRGEEVSRPLDDIILE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L D GV E+ LLGQNVNA+RG D E CTF++LL ++ I G+ RLR+TTSHP + Sbjct: 172 IAQLADQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAAIDGIDRLRFTTSHPIEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 + +I + D L+ +LHLPVQSGSD IL M R H A EY+ II R+R RPDI ISS Sbjct: 232 TQDIIDVYEDTPELVSFLHLPVQSGSDLILTQMKRGHMAIEYKSIIRRLRKARPDIQISS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFI+GFPGE+ DF TM L++ + + +FSF YS R GTP +++ + V K ERL Sbjct: 292 DFIIGFPGESKQDFADTMKLIEDVQFDHSFSFIYSARPGTPAADLPDDVTLEEKKERLAI 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ ++ +Q + ++ VG + +L+E K +L GR+ + V K +IG + Sbjct: 352 LQDRITQQAMRYSRHMVGTVQRILVEGPSVKNPMELRGRTENSRVVNFEGKPEHIGGFVD 411 Query: 453 VRITDVKISTLYGELV 468 V I DV ++L G V Sbjct: 412 VEIVDVYTNSLRGVFV 427 >gi|50086159|ref|YP_047669.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acinetobacter sp. ADP1] gi|81392304|sp|Q6F7W8|MIAB_ACIAD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|49532135|emb|CAG69847.1| putative tRNA-i(6)A37 modification enzyme (MiaB) [Acinetobacter sp. ADP1] Length = 483 Score = 363 bits (931), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 196/455 (43%), Positives = 286/455 (62%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GCQMN YDS RM D+ S GY +AD++++NTC IREKA EKV+S Sbjct: 31 KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTDPKEADILLMNTCSIREKAQEKVFSE 90 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140 LGR R LK ++ DL++ V GCVA EG+ I +R+P V++V GPQT +RLP++L Sbjct: 91 LGRWRKLK----QQNPDLIIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPQMLDQH 146 Query: 141 ----ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 E+ + K ++VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 147 QDQIEKPKKDKIKLVDISFPDIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 201 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EI+LLGQNVN +RG+ +G CTF +LL +S Sbjct: 202 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGGICTFPELLRLVS 261 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI G+ RLRYTTSHP + S+ LI+ + DL ++ +LHLPVQSGS+ +L++M R HT Y Sbjct: 262 EIPGIGRLRYTTSHPLEFSEELIQCYRDLPQMVSHLHLPVQSGSNAVLQAMKRNHTIDVY 321 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + I ++R +RPD+ +SSDFI+GFPGET+ +F T + + + ++SF YS R GTP Sbjct: 322 IEKIAKLRKIRPDMHLSSDFIIGFPGETEQNFEETYQFIKDLDFDHSYSFIYSKRPGTPA 381 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 S + + E VK ERL +Q +++ + DA G I VLIE K+ LVG + Sbjct: 382 SELEDTTSEAVKKERLAKVQHWIKQSSIRKTDAMQGTIQRVLIENVSEKDPNLLVGTADN 441 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 + V +G ++ IT++K ++ +YGEL+ Sbjct: 442 TRLVTFVGDPMWVGRFAEIEITEIKTLNLVYGELL 476 >gi|119504409|ref|ZP_01626489.1| bifunctional enzyme involved in thiolation and methylation of tRNA [marine gamma proteobacterium HTCC2080] gi|119459917|gb|EAW41012.1| bifunctional enzyme involved in thiolation and methylation of tRNA [marine gamma proteobacterium HTCC2080] Length = 432 Score = 362 bits (930), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 195/438 (44%), Positives = 280/438 (63%), Gaps = 13/438 (2%) Query: 36 MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS RM D+ S G + +DAD+++LNTC IREKA EKV+ LGR R LK ++ Sbjct: 1 MNEYDSARMADLLAESHGLALTDRAEDADVLLLNTCSIREKAQEKVFHQLGRWRPLKQAK 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV-DTD 153 +L++ V GCVA EG EI +R+P V+++ GPQT +RLPE++E R G VV D Sbjct: 61 ----PNLIIGVGGCVASQEGAEISKRAPFVDLIFGPQTLHRLPEMIEARRDGTPVVVDVS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+RL R G +AF++I EGC K+CTFCVVPYTRG E+SR + ++ E Sbjct: 117 FPEIEKFDRLP-----EPRVDGPSAFVSIMEGCSKYCTFCVVPYTRGEEVSRPVDDIIAE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 L GV E+ LLGQNVNA+RG GE F++LL+ ++ + G+ R+RYTTSHP + Sbjct: 172 IASLAGGGVKEVNLLGQNVNAYRGPNHLGESVDFAELLHLVNLVSGIERIRYTTSHPVEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 SD LI+ + D+ L+ +LHLPVQSGSDR L +M R HTA EY+ I +R +RP+I++SS Sbjct: 232 SDALIQCYADIPALVDHLHLPVQSGSDRTLMAMKRGHTALEYKAKIRALRRIRPNISLSS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFI+GFPGE + DF ATM L+D IG+ +FSF YS R GTP +++ ++ + K +RL Sbjct: 292 DFIIGFPGEDEKDFSATMKLIDDIGFDHSFSFIYSARPGTPAADLADETEMATKKQRLKI 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHN-IGDII 451 LQ ++ +Q + + A VG +L+ K+ G+L GR+ + V + + IG Sbjct: 352 LQGRIAQQAAAISIAMVGSEQRILVTGVSKKDPGQLAGRTENNRVVNFSCDDSGLIGHFA 411 Query: 452 KVRITDVKISTLYGELVV 469 V+I + ++L G+L+ Sbjct: 412 DVKIVEALPNSLRGQLLA 429 >gi|261253662|ref|ZP_05946235.1| tRNA-i(6)A37 methylthiotransferase [Vibrio orientalis CIP 102891] gi|260937053|gb|EEX93042.1| tRNA-i(6)A37 methylthiotransferase [Vibrio orientalis CIP 102891] Length = 474 Score = 362 bits (930), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 197/447 (44%), Positives = 286/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----EGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QSNEAPVMDISFPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L D GV E+ LLGQNVNA+RG +G+ C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPTHEGDICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGET D + TM L+ + + +FSF +SPR GTP ++ V Sbjct: 294 RKARPDIQISSDFIVGFPGETAKDHQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E K ERL LQ+ + Q + ++ + VL+E K+ +L R+ + V Sbjct: 354 PEQEKKERLYELQQTVNAQAMRYSRLMLDTEQRVLVEGPSKKNLMELRARTENNRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+ITDV ++L G+LV Sbjct: 414 GSADLIGQFVDVKITDVFANSLRGDLV 440 >gi|93006871|ref|YP_581308.1| tRNA-i(6)A37 modification enzyme MiaB [Psychrobacter cryohalolentis K5] gi|123386578|sp|Q1Q929|MIAB_PSYCK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|92394549|gb|ABE75824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychrobacter cryohalolentis K5] Length = 497 Score = 362 bits (930), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 196/458 (42%), Positives = 287/458 (62%), Gaps = 24/458 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ FV + GCQMNVYDS +M D+ S G E +++D+AD++++NTC IREKA EKV+S Sbjct: 44 KKVFVTTQGCQMNVYDSGKMLDVLGDSHGMEVTHNIDEADVLLMNTCSIREKAQEKVFSE 103 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK R DL++ V GCVA EG+ I +R+P V++V GPQT +RLPEL +++ Sbjct: 104 LGRWRKLKEKR----PDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPELYDQS 159 Query: 144 RFGKRV--------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 + + VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 160 HQQREIAPKNRIGTVDVSFPSIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 214 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L GV EI LLGQNVN +RG+ DG C F++LL+ +S Sbjct: 215 PYTRGEELSRPLDDVLAEIDSLAAQGVREINLLGQNVNGYRGEKDDGSICRFAELLHYVS 274 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + G+ R+RYTTSHP + +D +I A+ L L+ +LHLPVQSGS+ IL +M R HT Y Sbjct: 275 HVDGVERIRYTTSHPLEFTDDIIDAYAQLPELVSHLHLPVQSGSNAILAAMKRNHTIDVY 334 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I++++++RPDI +SSDFI+GFPGETD DF+ T++L ++ + ++SF YS R GTP Sbjct: 335 INQINKLKAIRPDIHLSSDFIIGFPGETDQDFQDTLNLAKELNFDHSYSFIYSKRPGTPA 394 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 + + + V K ERL QK + + ++ VG VL+E+ + L+G + Sbjct: 395 AELPDDVSFKTKKERLAEFQKVIIDSTLAKTHEMVGTTTRVLVEQVANRHPDCLIGTADN 454 Query: 435 LQSVV----LNSKNHNIGDIIKVRITD-VKISTLYGEL 467 ++V+ ++ + +G I+ VRITD V + GE+ Sbjct: 455 TRTVMFPYDVDKMDEMLGKIVSVRITDFVSPHMVKGEI 492 >gi|307822344|ref|ZP_07652576.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylobacter tundripaludum SV96] gi|307736910|gb|EFO07755.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylobacter tundripaludum SV96] Length = 438 Score = 362 bits (929), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 190/436 (43%), Positives = 281/436 (64%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ S G+E ++ AD+++LNTC IREKA EKV+S LG+ R +K+ R Sbjct: 1 MNEYDSDKMRDVLNASHGFELIDDPKQADVLLLNTCSIREKAQEKVFSALGKWRKIKDKR 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153 D+++ V GCVA EG I +R+P V++V GPQT +RLP+LL++AR ++ VVD Sbjct: 61 ----PDVIIGVGGCVASQEGAAIQKRAPFVDIVFGPQTLHRLPQLLDQARSQQKPVVDVS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+ L R G AF+++ EGC K+CTFCVVPYTRG EISR L V+ E Sbjct: 117 FPEIEKFDALP-----EPRAEGPKAFVSVMEGCSKYCTFCVVPYTRGEEISRPLDDVIAE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 L GV EI LLGQNVNA+RG+ DG+ F+ LL+ ++ ++G+ R+R+TTSHP + Sbjct: 172 ITSLAKQGVREINLLGQNVNAYRGEMDDGDIADFALLLHYVAAVEGIDRIRFTTSHPMEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D LI+A ++ L+ +LHLPVQSGSD ILK M R H +Y +II ++R+VRP+I +SS Sbjct: 232 TDELIEAFAEIPQLVDHLHLPVQSGSDHILKMMKRGHARADYIEIIRKLRAVRPNIYLSS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFI+GFPGETD +F TM +++IG+ +FSF YS R GTP +++ + V +VK +RL Sbjct: 292 DFIIGFPGETDAEFEETMSFIEEIGFDLSFSFVYSQRPGTPAADLPDDVPADVKKQRLER 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKNHNIGDIIK 452 Q ++ E + +++ +G + VL+E K+ ++ GR+ + V G + Sbjct: 352 FQNRINEMTAAISESMIGTVQTVLVEGQSKKNPLQMQGRTENNRVVNFIGHPRLAGQFVD 411 Query: 453 VRITDVKISTLYGELV 468 V I + ++L G +V Sbjct: 412 VLIAEALPNSLRGRMV 427 >gi|262377253|ref|ZP_06070477.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter lwoffii SH145] gi|262307706|gb|EEY88845.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter lwoffii SH145] Length = 485 Score = 362 bits (928), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 192/455 (42%), Positives = 291/455 (63%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GCQMN YDS RM D+ S GY +AD++++NTC IREKA EKV+S Sbjct: 33 KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTTDPKEADILLMNTCSIREKAQEKVFSE 92 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 LGR R LK+ + DL++ V GCVA EG+ I +R+ V+++ GPQT +RLP++L++ Sbjct: 93 LGRWRKLKD----KNPDLIIGVGGCVASQEGDNIQKRANYVDMIFGPQTLHRLPQMLDQH 148 Query: 143 -------ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 + ++VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 149 FEQIEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGYKAFVSIMEGCSKYCSFCVV 203 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EI+LLGQNVN +RG+ +G CTF+DLL ++ Sbjct: 204 PYTRGEEVSRPLDDVLAEIAGLAEKGVREISLLGQNVNGYRGETFEGNICTFADLLRLVA 263 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 +I G+ R+RYTTSHP + +D LI+ + DL ++ +LHLPVQSGS+ +L++M R HT Y Sbjct: 264 DIPGIGRIRYTTSHPLEFNDDLIQCYRDLPQMVSHLHLPVQSGSNDVLQAMKRNHTIDVY 323 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + I ++R+VRPD+ +SSDFI+GFPGETD++F T + + + ++SF YS R GTP Sbjct: 324 IEKIKKLRAVRPDMHLSSDFIIGFPGETDENFEETYQFIQDLDFDHSYSFIYSKRPGTPA 383 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 + + + + E+VK ERL +Q+ ++ + DA +G I VLIEK K+ LVG + Sbjct: 384 AELEDTISEDVKKERLAKVQQWIKRSSIDKTDAMLGTIQRVLIEKVSDKDPNILVGTADN 443 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 + V +G ++ IT++K ++ +YGEL+ Sbjct: 444 TRYVNFIGDPAWVGRFAEIEITEIKTLNLVYGELL 478 >gi|257455516|ref|ZP_05620748.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enhydrobacter aerosaccus SK60] gi|257447085|gb|EEV22096.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enhydrobacter aerosaccus SK60] Length = 488 Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 191/444 (43%), Positives = 284/444 (63%), Gaps = 23/444 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 +R F+++ GCQMNVYDS +M D+ S G ++ ++AD++++NTC IREKA EKV+S Sbjct: 39 KRVFIETQGCQMNVYDSEKMADVLGDSHGMVLTDNPEEADVLLMNTCSIREKAQEKVFSE 98 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ +L++ V GCVA EG++I R+P V++V GPQT +RLPEL +++ Sbjct: 99 LGRWKKLK----EKNPNLVIGVGGCVASQEGDKIQARAPHVDMVFGPQTLHRLPELYDQS 154 Query: 144 ----------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193 R G VVD + +KF+ L + G AF++I EGC K+C+FC Sbjct: 155 TKQLDVKPKNRIG--VVDVSFPSIEKFDFLP-----EPKVEGFKAFVSIMEGCSKYCSFC 207 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 VVPYTRG EISR L V+ E L GV E+TLLGQNVN +RG+ DG C FS+LL+ Sbjct: 208 VVPYTRGEEISRPLDDVLAEIDSLASQGVREVTLLGQNVNGYRGEKHDGTICRFSELLHY 267 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 ++ + G+ R+RYTTSHP + SD +I+A+ + L+ +LHLPVQSGS+ IL +M R HT Sbjct: 268 VAHVDGIERIRYTTSHPLEFSDDIIEAYAKIPKLVSHLHLPVQSGSNAILAAMKRNHTID 327 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 Y + I ++R+VRPD+ +SSDFI+GFP ETD DF+ T++L + + ++SF YS R GT Sbjct: 328 IYIEQIRKLRAVRPDMYLSSDFIIGFPNETDKDFQDTLNLAKDLDFDHSYSFIYSKRPGT 387 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRS 432 P S++ + +D K RL QK + + + VGQ + VL+E+HG + L+G + Sbjct: 388 PASDLPDNIDIATKKARLAEFQKVIVDSTWAKTQGMVGQTVRVLVEQHGDRNPEFLMGTA 447 Query: 433 PWLQSVVLNSKNHNIGDIIKVRIT 456 ++V+ + IG ++ V++T Sbjct: 448 DNTRTVLFKGDDALIGKLVMVKVT 471 >gi|258544941|ref|ZP_05705175.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Cardiobacterium hominis ATCC 15826] gi|258519861|gb|EEV88720.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Cardiobacterium hominis ATCC 15826] Length = 456 Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 193/447 (43%), Positives = 282/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + +++++GCQMN YDS +M + S G V++ ++AD+++LNTC IREKA EKV+S Sbjct: 6 KHVYIETHGCQMNEYDSSKMLAVLKVSHGITPVDTPEEADILLLNTCSIREKAQEKVFSQ 65 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +GR + LK+++ +++ V GCVA EGEE+ RR+P V+VV GPQT +RLP L+ A Sbjct: 66 IGRWKPLKDAK----PHVIIAVGGCVASQEGEELRRRAPAVDVVFGPQTLHRLPNLISEA 121 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + VVD + +KF+ L R G TAF+++ EGC K+CTFCVVPYTRG E Sbjct: 122 QEKRDGVVDVSFPEIEKFDHLP-----EPRAEGPTAFVSVMEGCSKYCTFCVVPYTRGEE 176 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L GV EI LLGQNVNA+RG DG + L+ ++ I G+ R Sbjct: 177 VSRPFDDVIAECASLAAQGVREINLLGQNVNAYRGALFDGGTADLALLIEYVAAIDGIDR 236 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D LI+ + + L+ +LHLPVQSGSD++L M R H A +Y++ + R+ Sbjct: 237 VRFTTSHPVEFTDNLIEVYRRVPQLVSHLHLPVQSGSDKVLALMKRGHKAAQYKEKLARL 296 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RP+I+ SSDFIVGFPGE D DF ATM L++ + Y +FSF YSPR GTP + M +++ Sbjct: 297 REIRPNISFSSDFIVGFPGEEDADFEATMQLIEDVFYDTSFSFIYSPRPGTPAAAMPDRI 356 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441 +VK RL LQ ++ + + VG VL++ K+ K V GR+ + V Sbjct: 357 PMDVKKARLARLQARILQMAAQISADMVGSEQWVLVDGVSKKNDKEVCGRTENNRVVNFQ 416 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG KV+IT ++L G L+ Sbjct: 417 APHALIGRFAKVQITAAYKNSLRGRLI 443 >gi|71066321|ref|YP_265048.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Psychrobacter arcticus 273-4] gi|123775573|sp|Q4FQU4|MIAB_PSYA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|71039306|gb|AAZ19614.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychrobacter arcticus 273-4] Length = 496 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 193/447 (43%), Positives = 280/447 (62%), Gaps = 23/447 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ FV + GCQMNVYDS +M D+ S G E + +D+AD++++NTC IREKA EKV+S Sbjct: 43 KKVFVTTQGCQMNVYDSGKMLDVLGDSHGMEVTHDIDEADVLLMNTCSIREKAQEKVFSE 102 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK R DL++ V GCVA EG+ I +R+P V++V GPQT +RLPEL +++ Sbjct: 103 LGRWRKLKEKR----PDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPELYDQS 158 Query: 144 RFGKRV--------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 + + VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 159 HQQREIAPKNRIGTVDVSFPSIEKFDFLP-----EPRVEGFKAFVSIMEGCSKYCSFCVV 213 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L GV EI LLGQNVN +RG+ DG C F++LL+ +S Sbjct: 214 PYTRGEELSRPLDDVLAEIDSLAAQGVREINLLGQNVNGYRGEKDDGNICRFAELLHYVS 273 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + G+ R+RYTTSHP + +D +I A+ L L+ +LHLPVQSGS+ IL +M R HT Y Sbjct: 274 HVDGVERIRYTTSHPLEFTDDIIDAYAQLPELVSHLHLPVQSGSNTILAAMKRNHTIDVY 333 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I++++++RPDI +SSDFI+GFPGETD DF+ T+ L ++ + ++SF YS R GTP Sbjct: 334 INQINKLKAIRPDIHLSSDFIIGFPGETDQDFQDTLTLAKELNFDHSYSFIYSKRPGTPA 393 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 + + + V K ERL QK + + ++ VG VL+E+ + L+G + Sbjct: 394 AELPDDVSFKTKKERLAEFQKVIIDSTLAKTHEMVGTTTRVLVEQVANRHPDCLIGTADN 453 Query: 435 LQSVV----LNSKNHNIGDIIKVRITD 457 ++V+ ++ + +G I+ VRITD Sbjct: 454 TRTVMFPYAVDKMDELLGKIVSVRITD 480 >gi|218708745|ref|YP_002416366.1| hypothetical protein VS_0724 [Vibrio splendidus LGP32] gi|218321764|emb|CAV17719.1| Hypothetical protein VS_0724 [Vibrio splendidus LGP32] Length = 474 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 194/447 (43%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEVPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I +R+P V+V+ GPQT +RLPE+++ + Sbjct: 63 LGRWKTLKDKK----EGVVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIKSS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K V+D + +KF+ L + G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 LSNEKPVMDISFPEIEKFDNLP-----EPKAEGATAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG +G+ C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEVAQLAEQGVREVNLLGQNVNAYRGPTHEGDICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFGDDIIEVYKDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGE+ DF+ TM L+ ++ + +FSF +SPR GTP ++ V Sbjct: 294 RKARPDIQISSDFIVGFPGESKQDFQDTMKLIKEVDFDMSFSFVFSPRPGTPAADYPCDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 K +RL LQ+ + Q + F+ +G +L+E ++ +L GR+ + V Sbjct: 354 PAQEKKDRLYELQQTVNTQAMRFSRLMLGTEQRILVEGPSRKNLMELRGRTENSRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+IT+V ++L GELV Sbjct: 414 GSADLIGQFVDVKITEVYTNSLRGELV 440 >gi|261400545|ref|ZP_05986670.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria lactamica ATCC 23970] gi|269209614|gb|EEZ76069.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria lactamica ATCC 23970] Length = 430 Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 193/437 (44%), Positives = 273/437 (62%), Gaps = 13/437 (2%) Query: 36 MNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNS 93 MN YDS +M + + G E+V DDAD+I+ NTC +REKA EKV+S LGR+R LK Sbjct: 1 MNEYDSDKMLAVLAEEHGGIEQVTQPDDADIILFNTCSVREKAQEKVFSDLGRVRPLK-- 58 Query: 94 RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDT 152 ++ L++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ ++ G VD Sbjct: 59 --EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVDKETSGLSQVDI 116 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 + +KF+ L R G AF++I EGC K+C+FCVVPYTRG E SR L+ V+ Sbjct: 117 SFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGEEFSRPLNDVLT 171 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 E L+ GV EI LLGQNVNA+RG+ +GE C F+ LL + EI G+ RLR+TTSHPR+ Sbjct: 172 EIAGLVQQGVKEINLLGQNVNAYRGEMENGEICDFATLLRIVHEIPGIERLRFTTSHPRE 231 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II ++R++RPD+ +S Sbjct: 232 FTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRKLRAIRPDLCLS 291 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 SDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + K RL Sbjct: 292 SDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDDTPHEEKVRRLE 351 Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHNIGDII 451 L + + + N VG + L+E K+ +L R+ + V I +I Sbjct: 352 ALNEVIEAETARINQTMVGTVQRCLVEGISKKDPDQLQARTANNRVVNFTGTPDMINQMI 411 Query: 452 KVRITDVKISTLYGELV 468 + IT+ +L G+ V Sbjct: 412 DLEITEAYTFSLRGKTV 428 >gi|84394394|ref|ZP_00993113.1| tRNA 2-methylthioadenosine synthase [Vibrio splendidus 12B01] gi|84374996|gb|EAP91924.1| tRNA 2-methylthioadenosine synthase [Vibrio splendidus 12B01] Length = 474 Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 194/447 (43%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEVPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I +R+P V+V+ GPQT +RLPE+++ + Sbjct: 63 LGRWKTLKDKK----EGVVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIKSS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K V+D + +KF+ L + G TA+++I EGC K+CT+CVVPYTRG E Sbjct: 119 LSNEKPVMDISFPEIEKFDNLP-----EPKADGATAYVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG +G+ CTF++LL ++ I G+ R Sbjct: 174 VSRPMDDVLYEVAQLAEQGVREVNLLGQNVNAFRGPTYEGDICTFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFGDDIIEVYKDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGE+ DF+ TM L+ ++ + +FSF +SPR GTP ++ V Sbjct: 294 RKARPDIQISSDFIVGFPGESKQDFQDTMKLIKEVDFDMSFSFVFSPRPGTPAADYPCDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 K +RL LQ+ + Q + F+ +G +L+E ++ +L GR+ + V Sbjct: 354 PAQEKKDRLWELQQTVNTQAMRFSRLMLGTEQRILVEGPSRKNLMELRGRTENSRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+IT+V ++L GELV Sbjct: 414 GSADLIGQFVDVKITEVYTNSLRGELV 440 >gi|261855784|ref|YP_003263067.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothiobacillus neapolitanus c2] gi|261836253|gb|ACX96020.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothiobacillus neapolitanus c2] Length = 482 Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 189/447 (42%), Positives = 283/447 (63%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + G+ + +AD+++LNTC IREKA EKV+S Sbjct: 27 RKLHIKTWGCQMNEYDSSKMADVLGANSGFIATDDPAEADVLLLNTCSIREKAQEKVFSQ 86 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ R LK ++ +L++ V GCVA EG I R+P V++V GPQT +RLPE++ Sbjct: 87 LGQWRPLK----EKNPNLIIGVGGCVASQEGASIRTRAPYVDIVFGPQTLHRLPEMVAAV 142 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 ++ VVD + +KF+ L R G TAF++I EGC K+C+FCVVPYTRG E Sbjct: 143 EANRKPVVDISFPEIEKFDNLPA-----PRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEE 197 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR V+ E +L + GV E+ LLGQNVNA+RG DG+ + L+ ++ I + R Sbjct: 198 ISRPFDDVIAEVAELAEQGVREVNLLGQNVNAYRGVMHDGQIADLALLIEYIARIDSIGR 257 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D LI+A+ ++ L YLHLPVQ GSDRIL M R HT EY+ + ++ Sbjct: 258 IRFTTSHPVEFTDRLIEAYRNVPKLAAYLHLPVQVGSDRILALMKRGHTVIEYKAKLRKL 317 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + RP I++SSDFI+GFPGET++DF ATM LV + + +FSF YS R GTP +++ + Sbjct: 318 MAARPGISLSSDFIIGFPGETEEDFEATMKLVTDMHFDHSFSFIYSARPGTPAASLPDDQ 377 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN 441 E VK RL LQ ++ Q+ + + A + + +L+ K+ +LVG++ +SV+ Sbjct: 378 PEAVKKARLHRLQAQITAQEQAISQAMLDTVQTILVTGPSKKDPDELVGKTENNRSVIFK 437 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 ++ G + VRIT+VK ++L + V Sbjct: 438 ARPELAGLFVDVRITEVKPNSLRADFV 464 >gi|160872066|ref|ZP_02062198.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rickettsiella grylli] gi|159120865|gb|EDP46203.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rickettsiella grylli] Length = 443 Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 194/445 (43%), Positives = 282/445 (63%), Gaps = 12/445 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMNVYDS + ++ S G ++ ++AD+IVLNTC IREKA EKV+S Sbjct: 4 KKIYIETHGCQMNVYDSDSLYNLLHHSHGLCLTSNPNEADVIVLNTCSIREKAQEKVFSQ 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ R +K+ R D+++ + GCVA EG I+ R+P V++V GPQT +RLP+++ Sbjct: 64 LGQWRKIKSLR----RDIIIAIGGCVASQEGSAIISRAPFVDIVFGPQTLHRLPDMINDV 119 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K+ +VD + +KF+ L R G A ++I EGC+K+C+FCVVPYTRG E Sbjct: 120 LEKKQPIVDISFPEIEKFDNLP-----EPRAEGPRALVSIMEGCNKYCSFCVVPYTRGEE 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR L V+ E L GV EITLLGQNVN ++G +G +DL+ ++ I ++R Sbjct: 175 ISRPLDDVLAEVVHLSQQGVREITLLGQNVNDYQGPRFEGGTADLADLIRYIAAIDDILR 234 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP SD LI+A+ D+ L +LHLPVQSGSD+IL +M R +T E++ + ++ Sbjct: 235 IRFTTSHPLAFSDRLIQAYADIPKLANHLHLPVQSGSDKILAAMKRGYTVLEFKSKLRQL 294 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R VRP IA SSDFIVGFPGET+ DFRAT+ LV+ IG+ +FSF YS R GTP + + + V Sbjct: 295 RQVRPTIAFSSDFIVGFPGETEADFRATLQLVESIGFDHSFSFIYSRRPGTPAAELPDSV 354 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441 K +RL LQ L Q + + G I +L+E K+ K +L GR+ + V Sbjct: 355 SLATKKQRLQILQNLLVFQGQTLSKKMCGTIQPILVEGPSKKNKEELQGRTENNRVVNFK 414 Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466 H IG ++ + IT+V ++L GE Sbjct: 415 GPLHWIGQLVPITITEVLRNSLRGE 439 >gi|167626244|ref|YP_001676744.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|229890537|sp|B0TXS4|MIAB_FRAP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|167596245|gb|ABZ86243.1| 2-alkenal reductase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 442 Score = 360 bits (923), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 194/448 (43%), Positives = 282/448 (62%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82 ++ F+K+ GCQMN YDS +M ++ + + V + D +AD+I++NTC IREKA EKV+ Sbjct: 5 KKVFIKTLGCQMNEYDSQKMHEVL-DEHFHTVKTDDYKEADIILINTCSIREKAQEKVFH 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR +NLK K+ DL++ V GCVA EGE I++R+P V++V GPQT +RLPE+++R Sbjct: 64 ELGRWKNLK----KKKEDLVIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKR 119 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + + VD + +KF+ L + G A+++I EGCDK+C++CVVPYTRG Sbjct: 120 KQSTQESQVDISFPEVEKFDFLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGP 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E++R V+ E L + GV EITLLGQNVN + G +GE + L++ ++EI G+ Sbjct: 175 EVNRPFEDVLGECAALAEQGVKEITLLGQNVNHYLGPMENGETADLALLIHFIAEIDGIE 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + S LI A+G + L +LHLPVQ GSDR+L +M R HT E++Q I + Sbjct: 235 RIRFTTSHPVEFSQNLIDAYGSVPELANHLHLPVQHGSDRVLINMKRNHTILEFKQKIRK 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPDI ISSDFIVGFPGET++DF+ MDLV + + Q+FSF YS R GTP +++ + Sbjct: 295 LRAIRPDITISSDFIVGFPGETEEDFQKLMDLVKDVNFDQSFSFIYSKRPGTPAADLPDD 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 VK +RL LQ L + VG +L+E K+ L GR+ + V Sbjct: 355 TPMEVKKDRLKRLQDLLNSNAQIISRQMVGTEQRILVEGTSKKDDNVLAGRTENNRIVNF 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG V+IT+ ++L GEL+ Sbjct: 415 IGDKSLIGQFAMVKITESLPNSLRGELI 442 >gi|262370519|ref|ZP_06063844.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter johnsonii SH046] gi|262314319|gb|EEY95361.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter johnsonii SH046] Length = 485 Score = 360 bits (923), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 193/455 (42%), Positives = 286/455 (62%), Gaps = 20/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GCQMN YDS RM D+ S GY +AD++++NTC IREKA EKV+S Sbjct: 33 KKLYIETQGCQMNEYDSHRMADLLGDSHGYVLTQDPKEADILLMNTCSIREKAQEKVFSE 92 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 LGR R LK+ + DL++ V GCVA EG+ I +R+ V+++ GPQT +RLP++L++ Sbjct: 93 LGRWRKLKD----KNPDLIIGVGGCVASQEGDNIQKRANYVDMIFGPQTLHRLPQMLDQH 148 Query: 143 -------ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 + ++VD + +KF+ L R G AF++I EGC K+C+FCVV Sbjct: 149 FDQIEKPKKEKIKLVDISFPDIEKFDFLP-----EPRVEGYKAFVSIMEGCSKYCSFCVV 203 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EI+LLGQNVN +RG+ +G CTF+DLL ++ Sbjct: 204 PYTRGEEVSRPLDDVLAEIATLAEKGVREISLLGQNVNGYRGETFEGNICTFADLLRLVA 263 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI G+ RLRYTTSHP + +D LI+ + DL ++ +LHLPVQSGS+ +L++M R HT Y Sbjct: 264 EIPGIGRLRYTTSHPLEFNDDLIECYRDLPQMVSHLHLPVQSGSNDVLQAMKRNHTIDVY 323 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I ++R VRPD+ +SSDFI+GFPGETD F T + + + ++SF YS R GTP Sbjct: 324 IDKIAKLRKVRPDMHLSSDFIIGFPGETDAHFEETYQFIKDMDFDHSYSFVYSKRPGTPA 383 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 S++ + E VK ERL +QK ++ + DA +G I VL+EK K+ L+G + Sbjct: 384 SDLEDTTSEEVKKERLSKVQKWIKRSSIDKTDAMLGTIQRVLVEKVSDKDPNLLIGTADN 443 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 + V +G ++ +T++K ++ +YGEL+ Sbjct: 444 TRYVSFIGDATWVGRFAEIEVTEIKTLNFVYGELL 478 >gi|241668686|ref|ZP_04756264.1| 2-alkenal reductase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877218|ref|ZP_05249928.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843239|gb|EET21653.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 442 Score = 359 bits (922), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 194/448 (43%), Positives = 282/448 (62%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82 ++ F+K+ GCQMN YDS +M ++ + + V + D +AD+I++NTC IREKA EKV+ Sbjct: 5 KKVFIKTLGCQMNEYDSQKMHEVL-DEHFHTVKTDDYKEADIILINTCSIREKAQEKVFH 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR +NLK K+ DL++ V GCVA EGE I++R+P V++V GPQT +RLPE+++R Sbjct: 64 ELGRWKNLK----KKKEDLVIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKR 119 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + + VD + +KF+ L + G A+++I EGCDK+C++CVVPYTRG Sbjct: 120 KQSTQESQVDISFPEVEKFDFLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGP 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E++R V+ E L + GV EITLLGQNVN + G +GE + L++ ++EI G+ Sbjct: 175 EVNRPFEDVLGECAALAEQGVKEITLLGQNVNHYLGPMENGETADLALLIHFIAEIDGIE 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + S LI A+G + L +LHLPVQ GSDR+L +M R HT E++Q I + Sbjct: 235 RIRFTTSHPVEFSQNLIDAYGSVPELANHLHLPVQHGSDRVLINMKRNHTILEFKQKIRK 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPDI ISSDFIVGFPGET++DF+ MDLV + + Q+FSF YS R GTP +++ + Sbjct: 295 LRAIRPDITISSDFIVGFPGETEEDFQKLMDLVKDVNFDQSFSFIYSKRPGTPAADLPDD 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 VK +RL LQ L + VG +L+E K+ L GR+ + V Sbjct: 355 TPIEVKKDRLKRLQDLLNSNAQIISRQMVGTEQRILVEGTSKKDDNVLAGRTENNRIVNF 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG V+IT+ ++L GEL+ Sbjct: 415 IGDKSLIGQFAMVKITESLPNSLRGELI 442 >gi|332526540|ref|ZP_08402652.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rubrivivax benzoatilyticus JA2] gi|332110808|gb|EGJ10985.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rubrivivax benzoatilyticus JA2] Length = 444 Score = 359 bits (922), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 196/453 (43%), Positives = 287/453 (63%), Gaps = 20/453 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS +M D+ + G YE + + ADL++ NTC +REKA EKV+S Sbjct: 2 KKVYIRTFGCQMNEYDSAKMADVLNAAGGYEPTDDPEQADLVLFNTCSVREKAQEKVFSD 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+++LK K+G +L+ V GCVA EG I+ R+P V++V GPQT +RLP+++ A Sbjct: 62 LGRVKHLK----KKG--VLIGVGGCVASQEGAAIIERAPYVDMVFGPQTLHRLPQMIA-A 114 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R +R VD + +KF+ L R G +AF++I EGC K+CT+CVVPYTRG Sbjct: 115 RSNERRPQVDISFPEIEKFDHLPP-----PRIEGASAFVSIMEGCSKYCTYCVVPYTRGE 169 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGL 260 E+SR V+ E L D GV E+TLLGQNVNA+RG G GE + LL ++E+ G+ Sbjct: 170 EVSRPFEDVLTEVADLADRGVKEVTLLGQNVNAYRGAMGESGEIADLALLLEYVAEVPGI 229 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP + + LI+A+G + L+ +LHLPVQ GSDRIL +M R +TA EY+ I Sbjct: 230 ERIRFTTSHPNEFTQRLIEAYGRIPKLVSHLHLPVQHGSDRILSAMKRGYTALEYKSTIR 289 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R RP I++SSDFIVGFPGET+DDF TM L+D +GY +FSF YS R GTP + + + Sbjct: 290 KLREQRPGISLSSDFIVGFPGETEDDFAKTMKLIDDVGYDASFSFVYSQRPGTPAAALDD 349 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439 + +K RL LQ + + + VG +L+E K+ + L+GR+ + V Sbjct: 350 DTPQELKLARLQTLQAAIEANVRRISASRVGTRQTILVEGPSKKNPQELMGRTECNRIVN 409 Query: 440 LN---SKNHNIGDIIKVRITDVKISTLYGELVV 469 + + + IG ++ V IT+ +L G V+ Sbjct: 410 FDGGPTPSRLIGQMLDVTITEALPHSLRGTPVL 442 >gi|86148579|ref|ZP_01066864.1| tRNA 2-methylthioadenosine synthase [Vibrio sp. MED222] gi|85833645|gb|EAQ51818.1| tRNA 2-methylthioadenosine synthase [Vibrio sp. MED222] Length = 474 Score = 359 bits (922), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 194/447 (43%), Positives = 287/447 (64%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEVPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I +R+P V+V+ GPQT +RLPE+++ + Sbjct: 63 LGRWKTLKDKK----EGVVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIKSS 118 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K V+D + +KF+ L + G TA+++I EGC K+CT+CVVPYTRG E Sbjct: 119 LSNEKPVMDISFPEIEKFDNLP-----EPKADGATAYVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG +G+ CTF++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEVAQLAEQGVREVNLLGQNVNAFRGPTHEGDICTFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + D +I+ + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFGDDIIEVYKDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGE+ DF+ TM L+ ++ + +FSF +SPR GTP ++ V Sbjct: 294 RKARPDIQISSDFIVGFPGESKQDFQDTMKLIKEVDFDMSFSFVFSPRPGTPAADYPCDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 K +RL LQ+ + Q + F+ +G +L+E ++ +L GR+ + V Sbjct: 354 PAQEKKDRLYELQQTVNTQAMRFSRLMLGTEQRILVEGPSRKNLMELRGRTENSRVVNFE 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+IT+V ++L GELV Sbjct: 414 GSADLIGQFVDVKITEVYTNSLRGELV 440 >gi|254670995|emb|CBA07742.1| conserved hypothetical protein [Neisseria meningitidis alpha153] Length = 430 Score = 359 bits (921), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 191/437 (43%), Positives = 273/437 (62%), Gaps = 13/437 (2%) Query: 36 MNVYDSLRMEDMFFSQ--GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNS 93 MN YDS +M + + G E+V D+AD+I+ NTC +REKA EKV+S LGR+R LK Sbjct: 1 MNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFSDLGRVRPLK-- 58 Query: 94 RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDT 152 ++ L++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ ++ G VD Sbjct: 59 --EKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVDKETSGLSQVDI 116 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 + +KF+ L R G AF++I EGC K+C+FCVVPYTRG E SR L+ V+ Sbjct: 117 SFPEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGEEFSRPLNDVLT 171 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 E L GV EI LLGQNVNA+RG+ DGE C F+ LL + EI G+ R+R+TTSHPR+ Sbjct: 172 EIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIERMRFTTSHPRE 231 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 +D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II ++R++RPD+ +S Sbjct: 232 FTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRKLRAIRPDLCLS 291 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 SDFIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + K RL Sbjct: 292 SDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDDTPHEEKVRRLE 351 Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHNIGDII 451 L + + + N +G + L+E K+ +L R+ + V I +I Sbjct: 352 ALNEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNFTGTPDMINQMI 411 Query: 452 KVRITDVKISTLYGELV 468 + IT+ +L G++V Sbjct: 412 DLEITEAYTFSLRGKVV 428 >gi|262165204|ref|ZP_06032941.1| tRNA-i(6)A37 methylthiotransferase [Vibrio mimicus VM223] gi|262024920|gb|EEY43588.1| tRNA-i(6)A37 methylthiotransferase [Vibrio mimicus VM223] Length = 461 Score = 359 bits (921), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 197/436 (45%), Positives = 282/436 (64%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ LGR + LK+ + Sbjct: 1 MNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKK 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153 +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE++++++ + V+D Sbjct: 61 ----PGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQISEAPVMDIS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E+SR + V+ E Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L + GV E+ LLGQNVNA+RG DGE C+F++LL ++ I G+ R+R+TTSHP + Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGATHDGEICSFAELLRLVATIDGIDRIRFTTSHPLEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++R RPDI ISS Sbjct: 232 TDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFIVGFPGETD DF+ TM L+ + + +FSF +SPR GTP ++ + E VK ERL Sbjct: 292 DFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYE 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ+++ Q + ++ +G +L+E K+ +L GR+ + V IG + Sbjct: 352 LQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFEGSPELIGQFVD 411 Query: 453 VRITDVKISTLYGELV 468 V+I DV ++L GELV Sbjct: 412 VKIVDVFANSLRGELV 427 >gi|323170787|gb|EFZ56437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Escherichia coli LT-68] gi|332096864|gb|EGJ01854.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella dysenteriae 155-74] Length = 453 Score = 359 bits (921), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 188/422 (44%), Positives = 275/422 (65%), Gaps = 13/422 (3%) Query: 50 SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109 + GY+ + ++AD+++LNTC IREKA EKV+ LGR + LK ++ DL++ V GCV Sbjct: 8 THGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQLGRWKLLK----EKNPDLIIGVGGCV 63 Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVD 167 A EGE I +R+ V+++ GPQT +RLPE++ R G R VVD + +KF+RL Sbjct: 64 ASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVR-GDRSPVVDISFPEIEKFDRLP--- 119 Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227 R G TAF++I EGC+K+CT+CVVPYTRG E+SR ++ E +L GV E+ L Sbjct: 120 --EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNL 177 Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287 LGQNVNAWRG+ DG +F+DLL ++ I G+ R+R+TTSHP + +D +I+ + D L Sbjct: 178 LGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPEL 237 Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347 + +LHLPVQSGSDRIL M R HTA EY+ II ++R+ RPDI ISSDFIVGFPGET +DF Sbjct: 238 VSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDF 297 Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407 TM L+ + + ++SF +S R GTP ++M++ V E K +RL LQ+++ +Q ++++ Sbjct: 298 EKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSR 357 Query: 408 ACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 +G +L+E ++ +L GR+ + V IG + V ITDV ++L G+ Sbjct: 358 RMLGTTQRILVEGTSRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGK 417 Query: 467 LV 468 +V Sbjct: 418 VV 419 >gi|145590038|ref|YP_001156635.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|229890594|sp|A4T007|MIAB_POLSQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|145048444|gb|ABP35071.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 448 Score = 359 bits (921), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 191/451 (42%), Positives = 287/451 (63%), Gaps = 16/451 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ + +G ++ +DAD+++LNTC IREKA +KV+S Sbjct: 2 KKLYIKTFGCQMNEYDSGKMADLLHADEGMVMTDTPEDADVVLLNTCSIREKAEDKVFSD 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR+R LK ++ +L+ V GCVA EG +I+ R+P V+VV GPQT +RL +L+ +R Sbjct: 62 LGRLRELKKTK----PHMLIGVGGCVASQEGRQIVSRAPYVDVVFGPQTLHRLSDLIAQR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G VD + +KF+ L +R+ +A+++I EGC K+C++CVVPYTRG E Sbjct: 118 RKTGLSQVDISFPEIEKFDHLPA-----SRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLV 261 +SR V+ E L GV EI LLGQNVNA+ GK D E+ F+ L+ ++EI G+ Sbjct: 173 VSRPFDDVLTEVAGLASKGVKEIVLLGQNVNAYLGKMGDAEEIADFALLIEYIAEIPGVE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP++ + LI + + L+ +LHLPVQ GSD IL +M R +TA EY+ II + Sbjct: 233 RIRFTTSHPKEFTQRLIDVYAKVPKLVSHLHLPVQHGSDSILSAMKRGYTALEYKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+VRPD+ +SSDFIVGFPGETD DF + +V ++ + +F F +SPR GTP +N+ + Sbjct: 293 MRAVRPDLTLSSDFIVGFPGETDADFEKLLKMVQELDFDNSFCFIFSPRPGTPAANLSDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 VK +RL L + Q + +G+ VLIE K+ L GR+ + + + Sbjct: 353 TPYEVKLKRLQTLLALIEGQSNQISQKMLGKTERVLIEGLAKDGVNLQGRAENNRVIHFS 412 Query: 442 SKNHN----IGDIIKVRITDVKISTLYGELV 468 + N IG+++ +RIT+V TL GELV Sbjct: 413 PPDQNIDGLIGEMVDIRITEVLNYTLRGELV 443 >gi|146284073|ref|YP_001174226.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas stutzeri A1501] gi|145572278|gb|ABP81384.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudomonas stutzeri A1501] Length = 406 Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 192/411 (46%), Positives = 265/411 (64%), Gaps = 17/411 (4%) Query: 61 DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120 +AD+I+LNTC IREKA EKV+S LGR R LK ++ L++ V GCVA EG I R Sbjct: 9 EADVILLNTCSIREKAQEKVFSQLGRWRELK----QDNPQLVIGVGGCVASQEGAAIRDR 64 Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179 +P V+VV GPQT +RLPE+++ AR + VD + +KF+RL R G +A+ Sbjct: 65 APYVDVVFGPQTLHRLPEMIDAARTTRTPQVDISFPEIEKFDRLP-----EPRVDGPSAY 119 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 +++ EGC K+CTFCVVPYTRG E+SR L+ V+ E L +NGV E+TLLGQNVN +R G Sbjct: 120 VSVMEGCSKYCTFCVVPYTRGEEVSRPLADVLAEIVHLAENGVKEVTLLGQNVNGYRHDG 179 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 D F+DLL++++ I G+ R+RYTTSHP + SD +I+AH D+ L+ YLHLPVQ+GS Sbjct: 180 HD-----FADLLHAVAAIDGIGRIRYTTSHPLEFSDAIIQAHADIPQLVKYLHLPVQAGS 234 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 DRIL +M R HTA EY+ I R+++ PDI ISSDFIVGFPGETD DF TM L++ +G+ Sbjct: 235 DRILAAMKRNHTALEYKSRIRRLKAAVPDILISSDFIVGFPGETDKDFEQTMKLIEDVGF 294 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ++SF YS R GTP +++ + E VK +RL LQ+++ +Q + VG +L+ Sbjct: 295 DFSYSFVYSARPGTPAADLADDTPEEVKKQRLAILQQRINQQGFENSRRMVGTTQRILVS 354 Query: 420 KHG-KEKGKLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468 + K+ G L GR+ + V N IG + V I D +L G L+ Sbjct: 355 DYSKKDPGMLQGRTEHNRIVNFRCDNPRLIGQFVDVHIDDALPHSLRGSLL 405 >gi|332678361|gb|AEE87490.1| tRNA-i(6)A37 methylthiotransferase [Francisella cf. novicida Fx1] Length = 442 Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 192/448 (42%), Positives = 282/448 (62%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82 ++ F+K+ GCQMN YDS RM ++ ++ ++ V + D DAD+I++NTC IREKA EKV+ Sbjct: 5 KKVFIKTLGCQMNEYDSARMHEVL-NEHFDTVKTDDYKDADIILINTCSIREKAQEKVFH 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 LGR + LK K DL++ V GCVA EGE I++R+P V++V GPQT +RLPE++ + Sbjct: 64 ELGRWKGLK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIRQ 119 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + + + VD + +KF+ L + G A+++I EGCDK+C++CVVPYTRG Sbjct: 120 KQKTQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGP 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E++R V+ E L + GV EITLLGQNVN + G +G+ + L++ ++EI G+ Sbjct: 175 EVNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIE 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + S LI A+ + L +LHLPVQ GSDRIL +M R HT E++Q I + Sbjct: 235 RIRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRK 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPDI ISSDFIVGFPGET++DF+ +DLV +I + Q+FSF YS R GTP +++ + Sbjct: 295 LRAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDD 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 VK +RL LQ L + VG +L++ K+ L GR+ + V Sbjct: 355 TPMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNF 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG V+IT+ ++L GEL+ Sbjct: 415 KGDKSLIGQFAMVKITESLPNSLRGELI 442 >gi|163752490|ref|ZP_02159679.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella benthica KT99] gi|161327634|gb|EDP98829.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella benthica KT99] Length = 461 Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 188/436 (43%), Positives = 276/436 (63%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ +GY + +AD+++LNTC IREKA EKV+ LGR + LK+ Sbjct: 1 MNEYDSSKMADLMDEYKGYTLTDDAAEADVLLLNTCSIREKAQEKVFHQLGRWKKLKD-- 58 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTD 153 + +L++ V GCVA EG+ I R+ V+++ GPQT +RLPE++++ + G K V+D Sbjct: 59 --KNPNLIIGVGGCVASQEGKMIKERAQCVDIIFGPQTLHRLPEMIDQVKQGGKAVIDIS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+RL R G TAF++I EGC K+C+FCVVPYTRG E+SR + V+ E Sbjct: 117 FPEIEKFDRLP-----EPRADGPTAFVSIMEGCSKYCSFCVVPYTRGEEVSRPVDDVILE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L + GV E+ LLGQNVNA+RG D + CTF++LL ++ I G+ R+R+TTSHP + Sbjct: 172 VAQLAEQGVREVNLLGQNVNAFRGATHDDDICTFAELLRYIAAIDGIDRVRFTTSHPIEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 S +I + D L+ ++HLPVQSGSD IL M R H A EY+ II R+R RPDI ISS Sbjct: 232 SQDIIDVYEDTPELVSFVHLPVQSGSDHILTQMKRGHMAIEYKSIIRRLRKARPDIQISS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFI+GFPGE+ DF TM L++ + + +FSF YS R GTP +++ + V K ERL Sbjct: 292 DFIIGFPGESKQDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDVTLAEKKERLAI 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ+++ +Q + ++ +G + +L+E K +L GR+ + V ++ +IG + Sbjct: 352 LQERITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTETSRVVNFSADPKHIGSFVD 411 Query: 453 VRITDVKISTLYGELV 468 V I DV ++L G V Sbjct: 412 VEIVDVYANSLRGTFV 427 >gi|148653672|ref|YP_001280765.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Psychrobacter sp. PRwf-1] gi|229890621|sp|A5WGM4|MIAB_PSYWF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|148572756|gb|ABQ94815.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychrobacter sp. PRwf-1] Length = 490 Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 192/459 (41%), Positives = 291/459 (63%), Gaps = 24/459 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++ + GCQMNVYDS +M ++ S +++++AD++++NTC IREKA EKV+S Sbjct: 37 KKVYIATQGCQMNVYDSEKMGNVLGDSHDMVVTDNIEEADVLLMNTCSIREKAQEKVFSE 96 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK +E DL++ V GCVA EG+ I +R+P V++V GPQT +RLPEL +++ Sbjct: 97 LGRWRKLK----EEKPDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPELYDKS 152 Query: 144 RFGKRV--------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 + V VD + +KF+ L + G AF++I EGC K+C+FCVV Sbjct: 153 TTQRNVKPKDRIGTVDVSFPSIEKFDFLP-----EPKVEGYRAFVSIMEGCSKYCSFCVV 207 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EITLLGQNVN +RG+ DG C F++LL+ ++ Sbjct: 208 PYTRGEELSRPLDDVLAEIDSLAEQGVREITLLGQNVNGYRGEKDDGSICRFAELLHYVA 267 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + G+ R+RYTTSHP + +D +I+A+ L L+ +LHLPVQSGS++IL +M R HT Y Sbjct: 268 HVDGIERIRYTTSHPLEFTDDIIEAYAKLPQLVSHLHLPVQSGSNKILAAMKRNHTIDVY 327 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I+++ +VRPD+ +SSDFI+GFPGET++DF T++L + + ++SF YS R GTP Sbjct: 328 INQINKLMAVRPDMHLSSDFIIGFPGETEEDFLDTLNLAKALDFDHSYSFIYSKRPGTPA 387 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 S + + V K ERL QK +R+ + + VG+ + V++E+ + +L+G + Sbjct: 388 SELPDDVSLATKKERLAIFQKVIRDSTLKKTEEMVGKTLRVMVEEIADRYPDQLLGTADN 447 Query: 435 LQSVVLNS----KNHNIGDIIKVRITD-VKISTLYGELV 468 +SV+ + K +G + V+ITD V + GELV Sbjct: 448 TRSVLFKATEQQKTDLMGKFVTVKITDFVSPHMVRGELV 486 >gi|149928259|ref|ZP_01916503.1| hypothetical protein LMED105_15758 [Limnobacter sp. MED105] gi|149823065|gb|EDM82306.1| hypothetical protein LMED105_15758 [Limnobacter sp. MED105] Length = 404 Score = 356 bits (914), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 186/410 (45%), Positives = 272/410 (66%), Gaps = 12/410 (2%) Query: 63 DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122 D+I+ NTC +REKA EKV+S LGR+++LK K +L++ V GCVA EG+ I+ R+P Sbjct: 1 DIILFNTCSVREKAQEKVFSDLGRVKHLK----KSNPNLIIGVGGCVASQEGKAIVDRAP 56 Query: 123 IVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181 V+VV GPQT +RLP+L+++ R R VD + +KF+ L + + G TAF++ Sbjct: 57 YVDVVFGPQTLHRLPQLIKQRRDTHRPQVDISFPEIEKFDNLPLA-----KNTGATAFVS 111 Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GL 240 I EGC K+C+FCVVPYTRG EISR V+ E L D GV EI LLGQNVNA+RGK G Sbjct: 112 IMEGCSKYCSFCVVPYTRGEEISRPFDDVLVEIADLADQGVREINLLGQNVNAYRGKMGD 171 Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300 E F+ LL +SE+ G+ R+R+TTSHP++ LI+A+ L L+ +LHLPVQ+GSD Sbjct: 172 TSEIADFALLLEYVSEVPGIERIRFTTSHPKEFGPRLIQAYAKLPKLVDHLHLPVQAGSD 231 Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 RIL +M R +TA EY+ II ++R +RP+I++SSDFIVGFPGE++ DF TMDL++ +G+ Sbjct: 232 RILSAMKRGYTALEYKSIIRKLREIRPNISMSSDFIVGFPGESEADFEKTMDLINAVGFD 291 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 +FSF YSPR GTP +++ + VD+ K +RL LQK +++ S + + VG +VL+E Sbjct: 292 TSFSFVYSPRPGTPAADLEDGVDQVTKLKRLARLQKTIQDHATSISKSMVGTRQKVLVEG 351 Query: 421 HG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 K+ +L GR+ + V +G I+++ I + ++L G++ + Sbjct: 352 PSRKDPAELAGRTENNRVVNFAGNARMVGQIVELDIVEAYPNSLRGQVPI 401 >gi|254467785|ref|ZP_05081191.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [beta proteobacterium KB13] gi|207086595|gb|EDZ63878.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [beta proteobacterium KB13] Length = 438 Score = 356 bits (913), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 182/446 (40%), Positives = 280/446 (62%), Gaps = 12/446 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K+YGCQMN YDS ++ ++ Y+ + ++DADL+VLNTC IREKA +KVY Sbjct: 3 KKIFIKTYGCQMNEYDSDQISNLMGKMDSYQSTDQVEDADLVVLNTCSIREKAEDKVYGQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 LGR+R LKN + + + V GCVA EGE I++R+P V++V GPQT +++P LL E Sbjct: 63 LGRLRELKNKK----PSMKIAVGGCVASQEGENIIKRAPYVDLVFGPQTLHKIPSLLKEN 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G +D + +KF++L + G +++++I EGC K+C+FCVVPYTRG E Sbjct: 119 ERVGSAQIDISFPAIEKFDQLPQA-----KSNGPSSYVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR +++E +L GV E+ LLGQNVNA+R K G + F++L+ +SEI + R Sbjct: 174 VSRPAEDIIEEILRLTQQGVIELNLLGQNVNAYRYKDKKGFEYDFAELINLISEIDEINR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP +M+D LI+ + L ++HLP+QSGSDRIL +M R + EY+QII ++ Sbjct: 234 IRFTTSHPNEMNDTLIECFQNNHKLANFIHLPIQSGSDRILSAMKRNYLYLEYKQIIKKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++ P+I ISSDFIVGFPGETD D + T+ + +I + ++SF YS R GTP S + + Sbjct: 294 KAASPNILISSDFIVGFPGETDQDHQQTIKAIKEIDFDYSYSFLYSARPGTPASYLKDST 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 +E +K RL +Q + EQ + A + VLI++ E G++ + V + + Sbjct: 354 NEEIKKNRLQEIQNLINEQGKNHTHALMNSEQRVLIDEKVDEIT-FKGKTDNNRIVEIKT 412 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 K + ++KV++T + GEL+ Sbjct: 413 KQDILNQMVKVKVTKTTNRRISGELI 438 >gi|152969257|ref|YP_001334366.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954106|gb|ABR76136.1| hypothetical protein KPN_00686 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 453 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 184/422 (43%), Positives = 272/422 (64%), Gaps = 13/422 (3%) Query: 50 SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109 + GY+ ++AD+++LNTC IREKA EKV+ LGR + LK ++ DL++ V GCV Sbjct: 8 THGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQLGRWKLLK----EKNPDLIIGVGGCV 63 Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVD 167 A EG+ I +R+ V+++ GPQT +RLPE++ R G R VVD + +KF+RL Sbjct: 64 ASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINSVR-GNRSPVVDISFPEIEKFDRLP--- 119 Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227 R G TAF++I EGC+K+CT+CVVPYTRG E+SR ++ E +L GV E+ L Sbjct: 120 --EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPCDDILFEIAQLAAQGVREVNL 177 Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287 LGQNVNAWRG+ DG +F+DLL ++ I G+ R+R+TTSHP + +D +I + D L Sbjct: 178 LGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIDVYRDTPEL 237 Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347 + +LHLPVQSGSDR+L M R HTA EY+ II ++R RPDI ISSDFIVGFPGET +DF Sbjct: 238 VSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLREARPDIQISSDFIVGFPGETTEDF 297 Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407 TM L+ + + ++SF +S R GTP ++M++ V E K +RL LQ+++ +Q ++++ Sbjct: 298 EKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEADKKQRLYILQERINQQAMAWSR 357 Query: 408 ACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 +G + +L+E ++ +L GR+ + V +G + V I DV ++L G+ Sbjct: 358 RMLGTVQRILVEGTSRKNIMELSGRTENNRVVNFEGTPDLVGKFVDVEIVDVYTNSLRGK 417 Query: 467 LV 468 +V Sbjct: 418 IV 419 >gi|27904873|ref|NP_777999.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46397184|sp|Q89AC2|MIAB_BUCBP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|27904271|gb|AAO27104.1| hypothetical protein bbp_392 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 445 Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 183/443 (41%), Positives = 280/443 (63%), Gaps = 12/443 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++K++GCQMN YDS + + + GYE A++++LNTC IREKA EKV+ L Sbjct: 5 KIYIKTWGCQMNEYDSALITQILKQKHGYENTKDPKLANVLILNTCSIREKAQEKVFHQL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + LK ++ +L++ V GCVA EG+ I +R+ V+++ G QT + LP +++ + Sbjct: 65 GRWKKLK----QKNPNLIIAVGGCVATQEGKNIYKRANYVDIIFGTQTLHYLPNMIQEVK 120 Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K+ V + D+ + +KF + Y RK VTAF++I EGC+KFC+FC+VPYTRG EI Sbjct: 121 KNKKSVTNIDFPLTEKFNFIE-----YPRKPKVTAFVSIMEGCNKFCSFCIVPYTRGHEI 175 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + ++ E L GV EI LLGQNVN+++GK +G+ C FS+LL ++ I G+ R+ Sbjct: 176 SRPVDDILLEISTLSSRGVKEIHLLGQNVNSYKGKTFNGDICKFSNLLRLVASIDGIDRI 235 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTS+P + +D +I+ + ++ ++ +LHLPVQSGS+RIL+ M R HT EY+ II++I Sbjct: 236 RFTTSNPFEFTDDIIEIYAEIPKIVSFLHLPVQSGSNRILQLMKRMHTIDEYKTIINKIL 295 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +RP+I ISSDFI+GFPGET DF T+ L+ + ++SF YSPR GTP S + + V Sbjct: 296 KLRPNIQISSDFIIGFPGETLIDFEQTLQLIKDLNIDMSYSFIYSPRPGTPASELQDNVT 355 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 K +RL LQ +R +N +G I VL+E ++ K L GR+ + V Sbjct: 356 LCEKQKRLHILQTLIRNNTTMWNQKMLGSIQSVLVEGRSQKNPKELFGRTENNRIVNFKG 415 Query: 443 KNHNIGDIIKVRITDVKISTLYG 465 + IG+ I ++IT + ++L G Sbjct: 416 NQNMIGEFINLKITKINPNSLRG 438 >gi|320157147|ref|YP_004189526.1| tRNA-i(6)A37 methylthiotransferase [Vibrio vulnificus MO6-24/O] gi|319932459|gb|ADV87323.1| tRNA-i(6)A37 methylthiotransferase [Vibrio vulnificus MO6-24/O] Length = 461 Score = 353 bits (905), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 193/436 (44%), Positives = 278/436 (63%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ LGR + LK+ + Sbjct: 1 MNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKK 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-GKRVVDTD 153 +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE++++++ V+D Sbjct: 61 ----PGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQSQSEDAPVMDIS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+ L R G TAF++I EGC K+CT+CVVPYTRG E+SR + V+ E Sbjct: 117 FPEIEKFDSLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLYE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L + GV E+ LLGQNVNA+RG DGE C+F++LL ++ I G+ R+R+TTSHP + Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDRIRFTTSHPLEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D +I + D L+ +LHLPVQSGSDRIL M R HT EY+ II ++R RPDI ISS Sbjct: 232 TDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIRKLRKARPDIQISS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFIVGFPGE+D DF+ TM L+ + + +FSF +SPR GTP ++ + E K ERL Sbjct: 292 DFIVGFPGESDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDLSEETKKERLYE 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ+++ Q + ++ +G VL+E K+ +L R+ + V IG + Sbjct: 352 LQQQINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFEGSADLIGQFVD 411 Query: 453 VRITDVKISTLYGELV 468 V+ITDV ++L GE+V Sbjct: 412 VKITDVFANSLRGEIV 427 >gi|115314702|ref|YP_763425.1| 2-methylthioadenine synthetase [Francisella tularensis subsp. holarctica OSU18] gi|156502304|ref|YP_001428369.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|254369234|ref|ZP_04985246.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] gi|122325275|sp|Q0BM96|MIAB_FRATO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890539|sp|A7NBR0|MIAB_FRATF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|115129601|gb|ABI82788.1| possible 2-methylthioadenine synthetase [Francisella tularensis subsp. holarctica OSU18] gi|156252907|gb|ABU61413.1| tRNA-I(6)A37 thiotransferase enzyme [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122184|gb|EDO66324.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] Length = 442 Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 192/448 (42%), Positives = 283/448 (63%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82 ++ F+K+ GCQMN YDS RM ++ ++ ++ V + D DAD+I++NTC IREKA EKV+ Sbjct: 5 KKVFIKTLGCQMNEYDSARMHEVL-NEHFDTVKTDDYKDADIILINTCSIREKAQEKVFH 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR + LK K DL++ V GCVA EGE I++R+P V++V GPQT +RLPE++++ Sbjct: 64 ELGRWKGLK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQ 119 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + ++ VD + +KF+ L + G A+++I EGCDK+C++CVVPYTRG Sbjct: 120 KQKSQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGP 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E++R V+ E L + GV EITLLGQNVN + G +G+ + L++ ++EI G+ Sbjct: 175 EVNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIE 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + S LI A+ + L +LHLPVQ GSDRIL +M R HT E++Q I + Sbjct: 235 RIRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRK 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPDI ISSDFIVGFPGET++DF+ +DLV +I + Q+FSF YS R GTP +++ + Sbjct: 295 LRAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDD 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 VK +RL LQ L + VG +L++ K+ L GR+ + V Sbjct: 355 TPMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNF 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG V+IT+ ++L GEL+ Sbjct: 415 KGDKSLIGQFAMVKITESLPNSLRGELI 442 >gi|56707743|ref|YP_169639.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670214|ref|YP_666771.1| hypothetical protein FTF0618c [Francisella tularensis subsp. tularensis FSC198] gi|118497654|ref|YP_898704.1| tRNA-methylthiotransferase MiaB protein [Francisella tularensis subsp. novicida U112] gi|134302074|ref|YP_001122043.1| tRNA-thiotransferase enzyme MiaB [Francisella tularensis subsp. tularensis WY96-3418] gi|187931466|ref|YP_001891450.1| tRNA-methylthiotransferase MiaB protein [Francisella tularensis subsp. mediasiatica FSC147] gi|194323626|ref|ZP_03057402.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella tularensis subsp. novicida FTE] gi|208779715|ref|ZP_03247059.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella novicida FTG] gi|224456814|ref|ZP_03665287.1| tRNA-methylthiotransferase MiaB protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254370246|ref|ZP_04986252.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254373019|ref|ZP_04988508.1| hypothetical protein FTCG_00593 [Francisella tularensis subsp. novicida GA99-3549] gi|254374469|ref|ZP_04989950.1| hypothetical protein FTDG_00638 [Francisella novicida GA99-3548] gi|254874556|ref|ZP_05247266.1| tRNA-methylthiotransferase miaB [Francisella tularensis subsp. tularensis MA00-2987] gi|81597746|sp|Q5NH53|MIAB_FRATT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|123169487|sp|Q14IK5|MIAB_FRAT1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890540|sp|B2SG13|MIAB_FRATM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890541|sp|A0Q6T5|MIAB_FRATN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890542|sp|A4IYC1|MIAB_FRATW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|56604235|emb|CAG45251.1| conserved hypothetical protein yleA [Francisella tularensis subsp. tularensis SCHU S4] gi|110320547|emb|CAL08634.1| conserved hypothetical protein yleA [Francisella tularensis subsp. tularensis FSC198] gi|118423560|gb|ABK89950.1| tRNA-methylthiotransferase MiaB protein [Francisella novicida U112] gi|134049851|gb|ABO46922.1| tRNA-thiotransferase enzyme MiaB [Francisella tularensis subsp. tularensis WY96-3418] gi|151568490|gb|EDN34144.1| hypothetical protein FTBG_01371 [Francisella tularensis subsp. tularensis FSC033] gi|151570746|gb|EDN36400.1| hypothetical protein FTCG_00593 [Francisella novicida GA99-3549] gi|151572188|gb|EDN37842.1| hypothetical protein FTDG_00638 [Francisella novicida GA99-3548] gi|187712375|gb|ACD30672.1| tRNA-methylthiotransferase MiaB protein [Francisella tularensis subsp. mediasiatica FSC147] gi|194321990|gb|EDX19472.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella tularensis subsp. novicida FTE] gi|208744170|gb|EDZ90470.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella novicida FTG] gi|254840555|gb|EET18991.1| tRNA-methylthiotransferase miaB [Francisella tularensis subsp. tularensis MA00-2987] gi|282158914|gb|ADA78305.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella tularensis subsp. tularensis NE061598] Length = 442 Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 192/448 (42%), Positives = 283/448 (63%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82 ++ F+K+ GCQMN YDS RM ++ ++ ++ V + D DAD+I++NTC IREKA EKV+ Sbjct: 5 KKVFIKTLGCQMNEYDSARMHEVL-NEHFDTVKTDDYKDADIILINTCSIREKAQEKVFH 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR + LK K DL++ V GCVA EGE I++R+P V++V GPQT +RLPE++++ Sbjct: 64 ELGRWKGLK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQ 119 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + ++ VD + +KF+ L + G A+++I EGCDK+C++CVVPYTRG Sbjct: 120 KQKTQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGP 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E++R V+ E L + GV EITLLGQNVN + G +G+ + L++ ++EI G+ Sbjct: 175 EVNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIE 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + S LI A+ + L +LHLPVQ GSDRIL +M R HT E++Q I + Sbjct: 235 RIRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRK 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPDI ISSDFIVGFPGET++DF+ +DLV +I + Q+FSF YS R GTP +++ + Sbjct: 295 LRAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDD 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 VK +RL LQ L + VG +L++ K+ L GR+ + V Sbjct: 355 TPMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNF 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG V+IT+ ++L GEL+ Sbjct: 415 KGDKSLIGQFAMVKITESLPNSLRGELI 442 >gi|328675997|gb|AEB28672.1| tRNA-i(6)A37 methylthiotransferase [Francisella cf. novicida 3523] Length = 442 Score = 352 bits (904), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 192/448 (42%), Positives = 282/448 (62%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82 ++ F+K+ GCQMN YDS RM ++ ++ + V + D DAD+I++NTC IREKA EKV+ Sbjct: 5 KKVFIKTLGCQMNEYDSARMHEVL-NEHFHTVKTDDYKDADIILINTCSIREKAQEKVFH 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR + LK K DL++ V GCVA EGE I++R+P V++V GPQT +RLPE++++ Sbjct: 64 ELGRWKGLK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQ 119 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + ++ VD + +KF+ L + G A+++I EGCDK+C++CVVPYTRG Sbjct: 120 KQKTQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGP 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E++R V+ E L + GV EITLLGQNVN + G +G+ + L++ ++EI G+ Sbjct: 175 EVNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIE 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + S LI A+ + L +LHLPVQ GSDRIL +M R HT E++Q I + Sbjct: 235 RIRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRK 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPDI ISSDFIVGFPGET++DF+ +DLV +I + Q+FSF YS R GTP +++ + Sbjct: 295 LRAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDD 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 VK +RL LQ L + VG +L++ K+ L GR+ + V Sbjct: 355 TPMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNF 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG V+IT+ ++L GEL+ Sbjct: 415 KGDKSLIGQFAMVKITESLPNSLRGELI 442 >gi|57340162|gb|AAW50068.1| hypothetical protein FTT0618 [synthetic construct] Length = 477 Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 192/448 (42%), Positives = 283/448 (63%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82 ++ F+K+ GCQMN YDS RM ++ ++ ++ V + D DAD+I++NTC IREKA EKV+ Sbjct: 31 KKVFIKTLGCQMNEYDSARMHEVL-NEHFDTVKTDDYKDADIILINTCSIREKAQEKVFH 89 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR + LK K DL++ V GCVA EGE I++R+P V++V GPQT +RLPE++++ Sbjct: 90 ELGRWKGLK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQ 145 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + ++ VD + +KF+ L + G A+++I EGCDK+C++CVVPYTRG Sbjct: 146 KQKTQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGP 200 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E++R V+ E L + GV EITLLGQNVN + G +G+ + L++ ++EI G+ Sbjct: 201 EVNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIE 260 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + S LI A+ + L +LHLPVQ GSDRIL +M R HT E++Q I + Sbjct: 261 RIRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRK 320 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPDI ISSDFIVGFPGET++DF+ +DLV +I + Q+FSF YS R GTP +++ + Sbjct: 321 LRAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDD 380 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 VK +RL LQ L + VG +L++ K+ L GR+ + V Sbjct: 381 TPMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNF 440 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG V+IT+ ++L GEL+ Sbjct: 441 KGDKSLIGQFAMVKITESLPNSLRGELI 468 >gi|89256244|ref|YP_513606.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella tularensis subsp. holarctica LVS] gi|167010861|ref|ZP_02275792.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Francisella tularensis subsp. holarctica FSC200] gi|254367560|ref|ZP_04983586.1| conserved hypothetical protein yleA [Francisella tularensis subsp. holarctica 257] gi|123287306|sp|Q2A3U6|MIAB_FRATH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|89144075|emb|CAJ79325.1| conserved hypothetical protein yleA [Francisella tularensis subsp. holarctica LVS] gi|134253376|gb|EBA52470.1| conserved hypothetical protein yleA [Francisella tularensis subsp. holarctica 257] Length = 442 Score = 352 bits (903), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 191/448 (42%), Positives = 283/448 (63%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82 ++ F+K+ GCQMN YDS RM ++ ++ ++ V + D DAD+I++NTC IREKA EKV+ Sbjct: 5 KKVFIKTLGCQMNEYDSARMHEVL-NEHFDTVKTDDYKDADIILINTCSIREKAQEKVFH 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR + +K K DL++ V GCVA EGE I++R+P V++V GPQT +RLPE++++ Sbjct: 64 ELGRWKGIK----KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQ 119 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + ++ VD + +KF+ L + G A+++I EGCDK+C++CVVPYTRG Sbjct: 120 KQKSQQSQVDISFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGP 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E++R V+ E L + GV EITLLGQNVN + G +G+ + L++ ++EI G+ Sbjct: 175 EVNRPFEDVLAECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIE 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + S LI A+ + L +LHLPVQ GSDRIL +M R HT E++Q I + Sbjct: 235 RIRFTTSHPVEFSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRK 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++RPDI ISSDFIVGFPGET++DF+ +DLV +I + Q+FSF YS R GTP +++ + Sbjct: 295 LRAIRPDITISSDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDD 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 VK +RL LQ L + VG +L++ K+ L GR+ + V Sbjct: 355 TPMEVKKDRLKRLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNF 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG V+IT+ ++L GEL+ Sbjct: 415 KGDKSLIGQFAMVKITESLPNSLRGELI 442 >gi|254509287|ref|ZP_05121379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus 16] gi|219547775|gb|EED24808.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus 16] Length = 461 Score = 352 bits (903), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 196/436 (44%), Positives = 278/436 (63%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMED-MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D M + GYE ++AD+++LNTC IREKA EKV+ LGR + LK+ + Sbjct: 1 MNEYDSSKMADLMNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKK 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153 +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE++++++ + V+D Sbjct: 61 ----PGVVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQSQSDEAPVMDIS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E+SR + V+ E Sbjct: 117 FPEIEKFDRLP-----EPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L + GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R+R+TTSHP + Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGPMHDGDICSFAELLRLVASIDGIDRIRFTTSHPLEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++R RPDI ISS Sbjct: 232 TDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFIVGFPGET D + TM L+ + + +FSF +SPR GTP ++ V E K ERL Sbjct: 292 DFIVGFPGETAKDHQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDVPEQEKKERLYE 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ+ + Q + ++ +G VL+E K+ +L R+ + V IG + Sbjct: 352 LQQTINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFEGSADLIGQFVD 411 Query: 453 VRITDVKISTLYGELV 468 V+ITDV ++L GELV Sbjct: 412 VKITDVFANSLRGELV 427 >gi|291279773|ref|YP_003496608.1| tRNA-i(6)A37 thiotransferase enzyme [Deferribacter desulfuricans SSM1] gi|290754475|dbj|BAI80852.1| tRNA-i(6)A37 thiotransferase enzyme [Deferribacter desulfuricans SSM1] Length = 439 Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 192/448 (42%), Positives = 287/448 (64%), Gaps = 20/448 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F+K++GCQMN YDS R+ +F +GY +++++A V+NTC +REK KV S LG Sbjct: 2 KLFIKTFGCQMNEYDSERIAAIFQERGYSLTDNLEEASFAVINTCSVREKPYHKVESELG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R++ K K D + V GCVAQ +GE+ L R V++V G RL L++ Sbjct: 62 RLKKFK----KLNPDFKIAVCGCVAQQDGEKFLDRFDYVDLVFGTSAIDRLHSLIDLVEK 117 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G+R+ DT ++ LSI + R + V+AF+TI +GCD FC++C+VPY RG E SR Sbjct: 118 GERICDTSEGDDE----LSI--PVFGRGKKVSAFVTIMKGCDNFCSYCIVPYVRGREKSR 171 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S+++DE + L++NGV E+TLLGQNVN++ GKGLD E F LLY + +I GL R+R+ Sbjct: 172 KPSEILDEIKYLVNNGVKEVTLLGQNVNSY-GKGLD-EDINFPKLLYKVHDINGLERIRF 229 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TSHP+D D LI A DL + YLHLP+Q+GS+++LK MNR++T EYR + + + + Sbjct: 230 VTSHPKDFDDELIFAIRDLPKVCEYLHLPLQAGSNKVLKMMNRKYTYEEYRDKVLKAKEM 289 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD+A+SSDFIVGFPGET +DF T+ + +I Y F+FKYSPR T SN ++ + ++ Sbjct: 290 IPDLALSSDFIVGFPGETVEDFAETLKAIKEIRYESIFAFKYSPRPKTKASNFVDDITDD 349 Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSV-VL 440 K+ R LL +Q K+ E+ N + VG++ E+L+E K K + + GR+ + V +L Sbjct: 350 EKSRRLNELLSIQSKITEE---INKSYVGKVQEILVEGKSKKGENQFSGRNRQNKVVNIL 406 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ NIGDI+ V I + K ++L ++V Sbjct: 407 SNHKLNIGDIVTVEIVEAKKNSLLAKIV 434 >gi|124514759|gb|EAY56271.1| TRNA-i(6)A37 modification enzyme (MiaB) [Leptospirillum rubarum] Length = 468 Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 193/447 (43%), Positives = 274/447 (61%), Gaps = 16/447 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F++K++GCQMNV+DS RM + ++G V+ AD+I++NTC IR+KA +K S LGR Sbjct: 30 FYIKTFGCQMNVHDSERMAGLLTAEGGNPVSEPAAADIILVNTCTIRDKADQKALSDLGR 89 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 IR ++ KEG ++ V GC+AQ EGEEI R P V++++GP L LL+ A Sbjct: 90 IRQVR----KEGPGTILAVTGCMAQREGEEIFRLVPDVDLILGPSQIRNLIPLLDAASTS 145 Query: 147 KRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + VD T + V + +I R GVTAF+T+QEGCDK C +CVVP TRG E SR Sbjct: 146 RARVDGTLWPVPEMTTPPAI------RPPGVTAFVTVQEGCDKACAYCVVPATRGAERSR 199 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ +V E L+ +G EITLLGQNVN + KG D +F +LL LS+I GL+RLR+ Sbjct: 200 PVTDIVREVENLVSSGFREITLLGQNVNGYGQKG-DTAGASFPELLQRLSDIPGLLRLRF 258 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTSHP DMS+ LI +MP+LHLPVQSGSDR+L+ M R ++ +YR+ I+++R Sbjct: 259 TTSHPMDMSEDLIDVMATSSRVMPHLHLPVQSGSDRMLERMQRGYSLDDYRRWIEKLRKK 318 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ A+++D IVGF GET++DF T+ V++ + AF+F YSPR TP + + Sbjct: 319 VPEAALTTDLIVGFCGETEEDFEKTLAAVEEFRFDGAFAFIYSPRPSTPAHSWEDVPPRE 378 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VVLN 441 + ERL LQKK+ +Q + N + VG +E+L EK E VGR+P Q+ V Sbjct: 379 MSVERLERLQKKVEQQAMERNQSLVGSRVEILTEKWDPETRTAVGRTPQFQTVRALVAPE 438 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + + GD++ V IT + L G V Sbjct: 439 RPDPSPGDLLWVTITQGARAGLKGNAV 465 >gi|171464142|ref|YP_001798255.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter necessarius subsp. necessarius STIR1] gi|229890593|sp|B1XS06|MIAB_POLNS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|171193680|gb|ACB44641.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 448 Score = 350 bits (897), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 189/451 (41%), Positives = 284/451 (62%), Gaps = 16/451 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS +M D+ + +G + +DAD+++LNTC IREKA +KV+S Sbjct: 2 KKLYIKTFGCQMNEYDSGKMADLLHADEGMVMTDRPEDADVVLLNTCSIREKAEDKVFSD 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK ++ +LL+ V GCVA EG++I+ +P V+VV GPQT +RL +L+ + Sbjct: 62 LGRLRELKKTK----PNLLIGVGGCVASQEGQQIVSHAPYVDVVFGPQTLHRLSDLIAKR 117 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G VD + +KF+ L +R+ +A+++I EGC K+C++CVVPYTRG E Sbjct: 118 RETGLFQVDISFPEIEKFDHLPA-----SRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLV 261 +SRS V+ E L GV EI LLGQNVNA+ GK G E F+ L+ + EI G+ Sbjct: 173 VSRSFDDVLTEVAGLASKGVKEIVLLGQNVNAYLGKMGDRQEIADFALLIEYIVEIPGVE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP++ + LI + + L+ +LHLPVQ GSD +L +M R +TA E++ II + Sbjct: 233 RIRFTTSHPKEFTQRLIDVYTKVPKLVSHLHLPVQHGSDAMLSAMKRGYTALEFKSIIRK 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+VRPD+ +SSDFIVGFPGET+ DF + +V+++ + +F F +SPR GTP +N+ + Sbjct: 293 MRAVRPDLTLSSDFIVGFPGETEADFEKLLKMVEELNFDNSFCFIFSPRPGTPAANLHDD 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 VK +RL L + Q + +G I VLIE K+ L GR+ + + Sbjct: 353 TPYEVKLKRLQTLLALVESQANQISQKMLGNIERVLIEGLAKDGINLQGRAENNRVIHFT 412 Query: 442 SKNHN----IGDIIKVRITDVKISTLYGELV 468 + N IG ++ +RIT+V TL G+LV Sbjct: 413 APAQNIENLIGQMVDIRITEVLNYTLRGKLV 443 >gi|21672691|ref|NP_660758.1| hypothetical protein BUsg426 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091587|sp|Q8K9C2|MIAB_BUCAP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|21623331|gb|AAM67969.1| hypothetical 53.7 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 439 Score = 350 bits (897), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 186/447 (41%), Positives = 283/447 (63%), Gaps = 18/447 (4%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++K++GCQMN YDS + G Y ++ AD+++LNTC IREKA EKV+ LGR Sbjct: 5 YIKTWGCQMNEYDSSMITVFLEKTGRYLITKEVEKADILILNTCSIREKAQEKVFHQLGR 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + LKN + D+++ V GCVA EG+EI +R+ V++V G QT ++L +++++ Sbjct: 65 WKKLKNKK----PDVIIAVGGCVATQEGKEIFKRANYVDIVFGTQTLHKLAQMIDKVEKN 120 Query: 147 KR-VVDTDYSVEDKFERLSIVDGGYN---RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +R ++D + +KF Y+ +K G TA ++I EGC+K+C+FCVVPYTRG E Sbjct: 121 RRFMIDISFPQLEKF--------NYSLEPKKTGYTASISIMEGCNKYCSFCVVPYTRGHE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR ++ E L +NGV EI LLGQNVNA+RG+ +G+ C FS+LL +SEI G+ R Sbjct: 173 ISRPSDDILLEISILAENGVREINLLGQNVNAYRGRTFNGKICFFSELLRLVSEIDGIDR 232 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTS+P + +D +I+ + D L+ +LHLPVQSGS+RIL+ M R +T EY +II+++ Sbjct: 233 IRFTTSNPLEFTDDIIEVYQDTPKLVSFLHLPVQSGSNRILQLMKRSYTTEEYEKIIEKL 292 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +I ISSDFIVGFP E+++DF+ T++ + KI + +FSF YS R GTP S M + + Sbjct: 293 ILARSNIQISSDFIVGFPSESEEDFQKTINFIKKINFDMSFSFIYSSRPGTPASEMKDNI 352 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 D K +RL LQ + +Q +S++ + VL+E K+ +L G++ + V Sbjct: 353 DLQEKKKRLYTLQNCINKQTMSWSRKMLKSTQSVLVEGVSKKNIMELYGKTENNRIVTFK 412 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + IG IK++I V +L GEL+ Sbjct: 413 GSHKMIGKFIKLKIKKVHTHSLQGELI 439 >gi|206602446|gb|EDZ38927.1| tRNA-i(6)A37 modification enzyme (MiaB) [Leptospirillum sp. Group II '5-way CG'] Length = 468 Score = 349 bits (896), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 193/447 (43%), Positives = 273/447 (61%), Gaps = 16/447 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F++K++GCQMNV+DS RM + S+G + V+ AD+I++NTC IR+KA +K S LGR Sbjct: 30 FYIKTFGCQMNVHDSERMAGLLASEGGKPVSEPAAADIILVNTCTIRDKADQKALSDLGR 89 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 IR ++ KEG ++ V GC+AQ EGEEI R P V++++GP L LL+ A Sbjct: 90 IRQVR----KEGPGTILAVTGCMAQREGEEIFRLVPDVDLILGPSQIRNLIPLLDAASTP 145 Query: 147 KRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + VD T + V + ++ R GV+AF+T+QEGCDK C +CVVP TRG E SR Sbjct: 146 RARVDGTLWPVPEMTTPPAL------RPPGVSAFVTVQEGCDKACAYCVVPATRGPERSR 199 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ ++ EA L+ G EITLLGQNVN + KG D +F +LL LS+I GL+R+R+ Sbjct: 200 PVADILREAEDLVSMGFREITLLGQNVNGYGQKG-DTAGASFPELLQRLSDIPGLLRIRF 258 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTSHP DMSD LI +MP+LHLPVQSGSDR+L+ M R +T +YR+ I+++R Sbjct: 259 TTSHPMDMSDALINVMATSSRVMPHLHLPVQSGSDRMLERMQRGYTLDDYRRWIEKLRKK 318 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ A+++D IVGF GET++DF T+ V++ + AF+F YSPR TP + + Sbjct: 319 VPEAALTTDLIVGFCGETEEDFEKTLAAVEEFRFDGAFAFIYSPRPSTPAHSWEDIPPRE 378 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VVLN 441 V ERL LQKK+ +Q + N VG +E+L EK E VGR+P + V Sbjct: 379 VSVERLERLQKKVEQQAMERNQGLVGSRVEILTEKWDPETRTAVGRTPQFLTVRALVAPE 438 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + + GD++ V IT + L G V Sbjct: 439 RPDPSPGDLLFVTITQGARAGLKGNAV 465 >gi|149378505|ref|ZP_01896181.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter algicola DG893] gi|149357211|gb|EDM45757.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marinobacter algicola DG893] Length = 417 Score = 349 bits (896), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 186/419 (44%), Positives = 270/419 (64%), Gaps = 18/419 (4%) Query: 54 ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113 E ++ DDAD+++LNTC IREKA EKV+ LGR + LKNS+ DL++ V GCVA E Sbjct: 2 EMTDTPDDADILLLNTCSIREKAQEKVFHQLGRWKKLKNSK----PDLIIGVGGCVASQE 57 Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARF---GKRVVDTDYSVEDKFERLSIVDGGY 170 G+ I+ R+P V++V GPQT +RLP+++ R G VVD + +KF+ L D G Sbjct: 58 GQAIIDRAPYVDMVFGPQTLHRLPDMITEVRAKGNGVGVVDVSFPEIEKFDNLP--DPGA 115 Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 + G +AF++I EGC K+CTFCVVPYTRG E+SR + V+ E L GV E+ LLGQ Sbjct: 116 D---GPSAFVSIMEGCSKYCTFCVVPYTRGEEVSRPVDDVIAEVAHLASQGVREVNLLGQ 172 Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290 NVNA+RG+ DG+ ++L+ ++ I G+ R+RYTTSHP + SD LI+A+ + L+ + Sbjct: 173 NVNAYRGETHDGDVMDMAELVTLIATIDGIDRIRYTTSHPVEFSDSLIEAYEQVPELVSH 232 Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350 LHLPVQSGSDR+L +M R HTA EY+ + R+R +RPDI+ SSDFI+GFPGET+ DF+ T Sbjct: 233 LHLPVQSGSDRVLAAMKRGHTALEYKSKLRRLRKIRPDISFSSDFIIGFPGETEKDFQDT 292 Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410 M L++ IG+ +FSF YS R GTP +++ + VK +RL LQ +L + + + V Sbjct: 293 MKLINDIGFDMSFSFIYSARPGTPAADLPDDTPLEVKKQRLSILQDRLNQNVMDISRKMV 352 Query: 411 GQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHN---IGDIIKVRITDVKISTLYG 465 G +L+ K+ G+ GR+ + ++N ++ N +G I V I + ++L G Sbjct: 353 GSTQRILVTGLSKKDPGEYAGRTE--NNRIVNFRHENPEVVGHFIDVEIREALPNSLRG 409 >gi|87119366|ref|ZP_01075264.1| hypothetical protein MED121_13890 [Marinomonas sp. MED121] gi|86165757|gb|EAQ67024.1| hypothetical protein MED121_13890 [Marinomonas sp. MED121] Length = 438 Score = 349 bits (896), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 179/436 (41%), Positives = 281/436 (64%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS RM D+ S E ++ ++AD+++LNTC IREKA +KVY LGR + LK+ Sbjct: 1 MNEYDSSRMADLLGDSHEMELTDNAEEADVLLLNTCSIREKAQDKVYHQLGRWKKLKD-- 58 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154 + DL + V GCVA EG+ I +R+ V+++ GPQT ++LPE+++ A + D + Sbjct: 59 --KNPDLKIGVGGCVASQEGDSIRKRAKHVDMIFGPQTLHKLPEMVDAAANSIPITDVTF 116 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 +KF+ L + G AF++I EGC K+CTFCVVPYTRG E+SR + ++ E Sbjct: 117 PEIEKFDHLPAP-----KVEGAEAFVSIMEGCSKYCTFCVVPYTRGEEVSRPFTDILVEV 171 Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274 +L + GV EI LLGQNVNA+RG +G + +D++ ++++I G+ R+R+TTSHP + + Sbjct: 172 MQLAEQGVREIHLLGQNVNAYRGVDNEGTESDLADVISAIAQIDGVERIRFTTSHPVEFT 231 Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334 D LI+A ++ L+ +LHLPVQSG+D ILK+M R H Y I+RI+ RP I++SSD Sbjct: 232 DSLIEAFRNIPKLVSHLHLPVQSGADNILKAMKRGHDRQSYIDKINRIKEARPGISLSSD 291 Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394 FI+GFPGETD DF TM+L+ +IG+ +FSF YS R GTP S++ + + E+VK +RL L Sbjct: 292 FIIGFPGETDQDFMDTMNLIQEIGFDHSFSFIYSQRPGTPASDLEDNISEDVKKQRLAIL 351 Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS-KNHNIGDIIK 452 Q+++++ ++ A +G +L+ + ++ G++ GR+ + V ++ + +G Sbjct: 352 QRRIKQHAYDYSQAMIGSTQRILVSGYSPRDPGQMQGRTENNRIVNFSAVEPQLVGKFAD 411 Query: 453 VRITDVKISTLYGELV 468 V IT+ ++L GE++ Sbjct: 412 VIITNAYPNSLLGEMI 427 >gi|258627068|ref|ZP_05721864.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258580586|gb|EEW05539.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 453 Score = 349 bits (896), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 190/421 (45%), Positives = 273/421 (64%), Gaps = 11/421 (2%) Query: 50 SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109 + GYE ++AD+++LNTC IREKA EKV+ LGR + LK+ + +++ V GCV Sbjct: 8 ANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKK----PGVVIGVGGCV 63 Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTDYSVEDKFERLSIVDG 168 A EG+ I R+P V+V+ GPQT +RLPE++++++ + V+D + +KF+RL Sbjct: 64 ATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQISEAPVMDISFPEIEKFDRLP---- 119 Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228 R G TAF++I EGC K+CT+CVVPYTRG E+SR + V+ E +L + GV E+ LL Sbjct: 120 -EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQGVREVNLL 178 Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288 GQNVNA+RG DGE C+F++LL ++ I G+ R+R+TTSHP + +D +I + D L+ Sbjct: 179 GQNVNAYRGATHDGEICSFAELLRLVATIDGIDRIRFTTSHPLEFTDDIIAVYEDTPELV 238 Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348 +LHLPVQSGSDRIL M R HTA EY+ II ++R RPDI ISSDFIVGFPGETD DF+ Sbjct: 239 SFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGETDKDFQ 298 Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408 TM L+ + + +FSF +SPR GTP ++ + E VK ERL LQ+++ Q + ++ Sbjct: 299 DTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYELQQQINSQAMRYSRL 358 Query: 409 CVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 +G +L+E K+ +L GR+ + V IG + V+I DV ++L GEL Sbjct: 359 MLGTEQRILVEGPSKKDLMELRGRTENNRVVNFEGSPELIGQFVDVKIVDVFANSLRGEL 418 Query: 468 V 468 V Sbjct: 419 V 419 >gi|332970480|gb|EGK09470.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Psychrobacter sp. 1501(2011)] Length = 528 Score = 349 bits (895), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 190/459 (41%), Positives = 288/459 (62%), Gaps = 24/459 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++ + GCQMNVYDS +M ++ S N++++AD++++NTC IREKA EKV+S Sbjct: 75 KKVYIATQGCQMNVYDSEKMGNVLGDSHDMIVTNNIEEADVLLMNTCSIREKAQEKVFSE 134 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK ++ DL++ V GCVA EG+ I +R+P V++V GPQT +RLPEL +++ Sbjct: 135 LGRWRKLK----EDNPDLVIGVGGCVASQEGDNIQKRAPYVDMVFGPQTLHRLPELYDQS 190 Query: 144 RFGKRV--------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 K V VD + +KF+ L + G AF++I EGC K+C+FCVV Sbjct: 191 TRQKDVKPKDRIGTVDVSFPSIEKFDFLP-----EPKVEGYRAFVSIMEGCSKYCSFCVV 245 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PYTRG E+SR L V+ E L + GV EITLLGQNVN +RG+ DG C F++LL+ ++ Sbjct: 246 PYTRGEELSRPLDDVLAEIDSLAEQGVREITLLGQNVNGYRGQKDDGSICRFAELLHYVA 305 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + G+ R+RYTTSHP + +D +I+A+ L L+ +LHLPVQSGS++IL +M R HT Y Sbjct: 306 HVDGIERIRYTTSHPLEFTDDIIEAYEKLPQLVSHLHLPVQSGSNKILAAMKRNHTIDVY 365 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I ++ +VRPD+ +SSDFI+GFPGET++DF T++L ++ + ++SF YS R GTP Sbjct: 366 INQIRKLMAVRPDMHLSSDFIIGFPGETEEDFLETLNLAKELDFDHSYSFIYSKRPGTPA 425 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 + + + V K ERL QK + + + VG+ + V++E+ + +L+G + Sbjct: 426 AELPDDVSLATKKERLAIFQKVIVDSTLKKTQEMVGKTLRVMVEEIADRYPDQLLGTADN 485 Query: 435 LQSVVLNS----KNHNIGDIIKVRITD-VKISTLYGELV 468 +SV+ + K +G + V+I D V + GELV Sbjct: 486 TRSVLFTATEEQKKELMGKFVTVKINDYVSPHMVRGELV 524 >gi|329897206|ref|ZP_08271946.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC3088] gi|328921361|gb|EGG28755.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC3088] Length = 434 Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 192/440 (43%), Positives = 278/440 (63%), Gaps = 16/440 (3%) Query: 36 MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS R+ D+ S ER ++ ++AD+++LNTC IREKA EKV+ LGR + LK Sbjct: 1 MNEYDSARIGDLLKTSHQLERTDNPEEADVLLLNTCSIREKAQEKVFHQLGRWKPLK--- 57 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKR---VV 150 ++ +L++ V GCVA EG I R+P V++V GPQT +RLPE++ ER++ G VV Sbjct: 58 -EKNPNLIIGVGGCVASQEGAAIGERAPYVDLVFGPQTLHRLPEMMAERSQQGPGNTIVV 116 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D + +KF+ L + +G +AF++I EGC K+C+FCVVPYTRG E+SR L V Sbjct: 117 DVSFPEIEKFDCLPDPE-----IKGASAFVSIMEGCSKYCSFCVVPYTRGEEVSRPLDDV 171 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 + E ++GV E+ LLGQNVNA+RG GE F++LL ++ I + R+RYTTSHP Sbjct: 172 IAEVAHAAEHGVKEVNLLGQNVNAYRGLNYLGEVVDFAELLTYIARIPAIERIRYTTSHP 231 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 + S LI + ++ L+ +LHLPVQSGSDRIL +M R HTA EY+ I +R +RP+I+ Sbjct: 232 VEFSQALIDVYAEIPQLVDHLHLPVQSGSDRILAAMKRGHTALEYKSKIRALRKIRPNIS 291 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 +SSDFIVGFPGETD DF ATM L++ IGY +FSF YS R GTP +++++ VK +R Sbjct: 292 MSSDFIVGFPGETDADFNATMKLIEDIGYDSSFSFIYSARPGTPAADLVDDTPMEVKKQR 351 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHN-IG 448 L LQ ++ Q ++ VG +L+ K+ G+L GR+ + V + +H I Sbjct: 352 LQILQARIAGQARIISENMVGTRQRILVSGVSKKDPGQLQGRTENNRVVNFSCTDHGLIN 411 Query: 449 DIIKVRITDVKISTLYGELV 468 + V + + ++L G L+ Sbjct: 412 EFAWVTVDEALPNSLRGTLL 431 >gi|258621980|ref|ZP_05717009.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258585733|gb|EEW10453.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 383 Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 179/369 (48%), Positives = 252/369 (68%), Gaps = 11/369 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK+ + +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE+++++ Sbjct: 63 LGRWKTLKDKK----PGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQS 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + V+D + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E Sbjct: 119 QISEAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DGE C+F++LL ++ I G+ R Sbjct: 174 VSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGEICSFAELLRLVATIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++ Sbjct: 234 IRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R RPDI ISSDFIVGFPGETD DF+ TM L+ + + +FSF +SPR GTP ++ + Sbjct: 294 RKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDL 353 Query: 383 DENVKAERL 391 E VK ERL Sbjct: 354 SEEVKKERL 362 >gi|297539312|ref|YP_003675081.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylotenera sp. 301] gi|297258659|gb|ADI30504.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Methylotenera sp. 301] Length = 456 Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 190/449 (42%), Positives = 276/449 (61%), Gaps = 14/449 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ F+K++GCQMN YDS RM DM + G + +DAD+I+LNTC +REKA +KV+S Sbjct: 18 PKKVFIKTFGCQMNEYDSSRMADMLNATDGMVETLTPEDADVILLNTCSVREKAEDKVFS 77 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR LK K +L++ V GCVA EG+ I++R+P V+VV GPQT +RLP++++ Sbjct: 78 HLGRFIPLK----KANPNLVIGVGGCVASQEGDNIIKRAPYVDVVFGPQTLHRLPDMIKS 133 Query: 143 ARFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 ++ D + +KF+ L R G +AFL+I EGC K+C+FCVVPYTRG Sbjct: 134 SQSSGVSQVDISFPEIEKFDHLP-----PPRIEGASAFLSIMEGCSKYCSFCVVPYTRGE 188 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ EA +L + GV EITLLGQNVNA+R + D E + L+ ++EI + Sbjct: 189 EVSRPFEAILTEAAQLAEQGVKEITLLGQNVNAYRAQYNDLE-ADLAMLIEYIAEIPQVE 247 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP +MS LI ++ L LHLPVQ+GSDR+L +M R +TA +++ I + Sbjct: 248 RIRFTTSHPNEMSQRLIDCFANIPKLAVQLHLPVQAGSDRVLMAMKRNYTALQFKSTIRK 307 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P++ +SDFI+GFPGE++ +F AT L+ +G+ +FSF YSPR GTP S + ++ Sbjct: 308 LRVANPNLTFTSDFIIGFPGESEAEFEATAKLMQDVGFDYSFSFLYSPRPGTPASYLADE 367 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVL 440 + VK RL LQ E S + +G I VLIE K +L G++ + V + Sbjct: 368 TSQEVKLARLTKLQAINEELGKSISTQMLGTIQRVLIESASWKNANELAGKTDNNRIVDI 427 Query: 441 NSKNHNIGDIIKVRITDV-KISTLYGELV 468 I + VRIT+V L GE+V Sbjct: 428 AGDKSLIHTFVNVRITNVSNPKRLRGEIV 456 >gi|88811726|ref|ZP_01126980.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrococcus mobilis Nb-231] gi|88791117|gb|EAR22230.1| tRNA-i(6)A37 modification enzyme MiaB [Nitrococcus mobilis Nb-231] Length = 443 Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 187/436 (42%), Positives = 273/436 (62%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ ++ G+ERV S DADLI+LNTC IR KA EKV+S LGR R LK Sbjct: 1 MNEYDSTKMVDVLGAERGFERVYSPLDADLILLNTCSIRAKAQEKVFSELGRWRPLK--- 57 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTD 153 + L++ V GCVA EG I+ R+P V++V GPQT +RLPE+ +R + VVDT Sbjct: 58 -ERNPGLVIGVGGCVASQEGATIIDRAPFVDLVFGPQTLHRLPEMYDRVLSTRAPVVDTS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+RL R G TAF+++ EGC K+CTFCVVPYTRG E+SR V+ E Sbjct: 117 FPEIEKFDRLP-----EPRAVGPTAFVSVMEGCSKYCTFCVVPYTRGEEVSRPFEDVLAE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L + GV E+TLLGQNVN + G DG + L++ ++ + G+ R+R+TTSHP + Sbjct: 172 VAQLAEQGVREVTLLGQNVNGYLGTMDDGTVADLALLIHFIAAVDGIDRIRFTTSHPLNF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 + LI+A+ ++ L+ +LHLPVQSGSD++L+ M R HT Y II+R+++ RPD+ +SS Sbjct: 232 NATLIEAYAEVPQLVSHLHLPVQSGSDKVLRLMKRNHTRDYYLDIIERLKAARPDLVVSS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFIVGFPGE + DF T+ LV+++G+ Q+FSF YS R GTP + + + + K +RL Sbjct: 292 DFIVGFPGELERDFEDTLALVEQVGFDQSFSFIYSRRPGTPAAQLPDAIPLEAKKQRLYR 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ+ L + + VG +L++ K+ ++ GR+ + V IG ++ Sbjct: 352 LQEILNRNAQHVSQSMVGTTQTILVDGLSKKVASEVTGRTENNRVVNFPGPRRLIGRFVR 411 Query: 453 VRITDVKISTLYGELV 468 + IT +L G+L+ Sbjct: 412 IEITQALAHSLRGKLI 427 >gi|297568782|ref|YP_003690126.1| RNA modification enzyme, MiaB family [Desulfurivibrio alkaliphilus AHT2] gi|296924697|gb|ADH85507.1| RNA modification enzyme, MiaB family [Desulfurivibrio alkaliphilus AHT2] Length = 452 Score = 346 bits (888), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 194/452 (42%), Positives = 278/452 (61%), Gaps = 21/452 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++++GCQMN DS M + Y + ++AD IV+NTC IR KAA+K YS LG Sbjct: 7 LYIETFGCQMNERDSEIMTQLMSQAAYLETSRPEEADCIVVNTCSIRGKAAQKAYSLLGG 66 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF- 145 R LK R +L++ VAGCVAQ +GE +L++ P +++V+GPQ YRLPEL+E AR Sbjct: 67 YRRLKKRR----PELVIAVAGCVAQQDGENLLKKMPHLDLVIGPQNIYRLPELVESARRQ 122 Query: 146 GKRVVDTDYS---VEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R T+ S V F L V+G N KR F+TI +GC+ FCT+CVVP+TRG Sbjct: 123 ATRTTATELSKDFVIPPF--LPQVNGTATNHKR----FVTIMQGCNNFCTYCVVPHTRGR 176 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGK-GLDGEKCTFSDLLYSLSEI 257 E+SR +++E R L D+GV E+TLLGQNVN++ RG G G+ F LL ++ + Sbjct: 177 EVSRKPEDIINEVRHLADHGVREVTLLGQNVNSYGQDRGPAGTTGQIDDFPALLQAVVAV 236 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +G+ R+R+TTSHP+D+S LI L+ L P+ HLPVQSGSDRIL MNR+++ +Y Sbjct: 237 EGIYRVRFTTSHPKDLSPELIDCFAQLNKLCPHFHLPVQSGSDRILARMNRKYSRADYLA 296 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + ++R VRPDIAI++D IVGFPGET+ DF ATM+LV+ + Y AFSFKYS R + Sbjct: 297 RVAQLRRVRPDIAITTDLIVGFPGETEADFEATMELVNFVRYDSAFSFKYSDRPNAAAAA 356 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQ 436 ++V E VK+ RL LQ++ E + VG +EV++E K G+ GR+P + Sbjct: 357 FDDKVPEEVKSRRLSLLQQRQEEISREIGRSMVGSTVEVMVEGRSKNSDGQWSGRTPTNR 416 Query: 437 SVVLNSKNH-NIGDIIKVRITDVKISTLYGEL 467 V + G+++ V + + +L G + Sbjct: 417 IVNFTGPDSLRPGELVDVYLEEACRHSLRGRM 448 >gi|312882697|ref|ZP_07742434.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369658|gb|EFP97173.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 461 Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 190/436 (43%), Positives = 277/436 (63%), Gaps = 12/436 (2%) Query: 36 MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ LGR + LK+ + Sbjct: 1 MNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKK 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTD 153 +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE++++++ ++D Sbjct: 61 KG----VVIGVGGCVATQEGDHIRERAPFVDVIFGPQTLHRLPEMIKQSQDDDAPIMDIS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+RL + G TAF++I EGC K+CT+CVVPYTRG E+SR + V+ E Sbjct: 117 FPEIEKFDRLP-----EPKAEGATAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L + GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R+R+TTSHP + Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGPMHDGDICSFAELLRLVASIDGIDRIRFTTSHPLEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D +I + + L+ +LHLPVQSGSDRIL M R HT EY+ II ++R RPDI ISS Sbjct: 232 TDDIIAVYENTPELVSFLHLPVQSGSDRILTMMKRPHTGIEYKSIIRKLRKARPDIQISS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFIVGFPGETD DF+ TM L+ + + +FSF +SPR GTP ++ V E K +RL Sbjct: 292 DFIVGFPGETDKDFQDTMKLIKAVDFDMSFSFIFSPRPGTPAADYPCDVSEQEKKDRLYE 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ+ + Q + ++ + VL+E K+ +L R+ + V IG + Sbjct: 352 LQQTINSQAMRYSRQMLDTEQRVLVEGPSKKNLMELRARTENNRVVNFEGSPDLIGQFVD 411 Query: 453 VRITDVKISTLYGELV 468 V+ITDV ++L G+LV Sbjct: 412 VKITDVFANSLRGDLV 427 >gi|219682347|ref|YP_002468731.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219622080|gb|ACL30236.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086744|gb|ADP66825.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 439 Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 182/443 (41%), Positives = 274/443 (61%), Gaps = 12/443 (2%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++K++GCQMN YDS + + Y S ++AD+++LNTC IREKA EKV+ LGR Sbjct: 5 YIKTWGCQMNEYDSSMIITLLEKNNQYSLTKSAENADILILNTCSIREKAQEKVFHQLGR 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + +KN+ K +++ V GCVA EG+EI +R+ V+++ G QT +RLP++++ Sbjct: 65 WKKIKNNNPK----VIIAVGGCVATQEGKEIFKRANYVDIIFGTQTLHRLPKMIDEVEKK 120 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +++ +D + +KF+ +K+G TA ++I EGC+K+C+FCVVPYTRG EISR Sbjct: 121 RKLSIDISFPKLEKFKYFLAP-----KKKGYTADISIMEGCNKYCSFCVVPYTRGNEISR 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 V+ E L G+ EI LLGQNVNA++G +G+ C FS+L+ ++EI G+ R+R+ Sbjct: 176 PCDDVLFEISLLAKQGIKEINLLGQNVNAYQGPTFNGKVCYFSELIRLVAEIDGIERIRF 235 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTS+P + +D +I+ + D L+ +LHLPVQSGS++IL M R +T +Y II ++ Sbjct: 236 TTSNPLEFTDDIIEVYKDTPKLVSFLHLPVQSGSNKILNLMKRSYTTEDYTSIIKKLTIA 295 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RPDI ISSDFIVGFPGE++ DF T++ + I + +FSF YS R GTP SNM + +D Sbjct: 296 RPDIQISSDFIVGFPGESEIDFEKTIEFIKNINFDMSFSFIYSARPGTPASNMNDNLDLK 355 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKN 444 K RL LQ+++ Q + ++ G I VL+E K L GR+ + V + Sbjct: 356 EKKRRLYILQERINIQTMLWSRKMFGSIQSVLVEGVSDKNIMDLYGRTENNRVVTFQGSS 415 Query: 445 HNIGDIIKVRITDVKISTLYGEL 467 IG + V+I V +L GEL Sbjct: 416 EMIGQFVNVKIKKVHTHSLKGEL 438 >gi|219681792|ref|YP_002468178.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471494|ref|ZP_05635493.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA) [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624635|gb|ACL30790.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 439 Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 182/443 (41%), Positives = 274/443 (61%), Gaps = 12/443 (2%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++K++GCQMN YDS + + Y S ++AD+++LNTC IREKA EKV+ LGR Sbjct: 5 YIKTWGCQMNEYDSSMIITLLEKNNQYSLTKSAENADILILNTCSIREKAQEKVFHQLGR 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + +KN+ K +++ V GCVA EG+EI +R+ V+++ G QT +RLP++++ Sbjct: 65 WKKIKNNNPK----VIIAVGGCVATQEGKEIFKRANYVDIIFGTQTLHRLPKMIDEVEKK 120 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +++ +D + +KF+ +K+G TA ++I EGC+K+C+FCVVPYTRG EISR Sbjct: 121 RKLSIDISFPKLEKFKYFLAP-----KKKGYTADISIMEGCNKYCSFCVVPYTRGNEISR 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 V+ E L G+ EI LLGQNVNA++G +G+ C FS+L+ ++EI G+ R+R+ Sbjct: 176 PCDDVLFEISLLAKQGIKEINLLGQNVNAYQGPTFNGKVCYFSELIRLVAEIDGIERIRF 235 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTS+P + +D +I+ + D L+ +LHLPVQSGS++IL M R +T +Y II ++ Sbjct: 236 TTSNPLEFTDDIIEVYKDTPKLVSFLHLPVQSGSNKILNLMKRSYTTEDYTSIIKKLTIA 295 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RPDI ISSDFIVGFPGE++ DF T++ + I + +FSF YS R GTP SNM + +D Sbjct: 296 RPDIQISSDFIVGFPGESEIDFEKTIEFIKNINFDMSFSFIYSARPGTPASNMNDDLDLK 355 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKN 444 K RL LQ+++ Q + ++ G I VL+E K L GR+ + V + Sbjct: 356 EKKRRLYILQERINIQTMLWSRKMFGSIQSVLVEGVSDKNIMDLYGRTENNRVVTFQGSS 415 Query: 445 HNIGDIIKVRITDVKISTLYGEL 467 IG + V+I V +L GEL Sbjct: 416 EMIGQFVNVKIKKVHTHSLKGEL 438 >gi|15617040|ref|NP_240253.1| hypothetical protein BU441 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11387299|sp|P57516|MIAB_BUCAI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|25305427|pir||C84981 hypothetical protein [imported] - Buchnera sp. (strain APS) gi|10039105|dbj|BAB13139.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 439 Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 182/443 (41%), Positives = 274/443 (61%), Gaps = 12/443 (2%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++K++GCQMN YDS + + Y S ++AD+++LNTC IREKA EKV+ LGR Sbjct: 5 YIKTWGCQMNEYDSSMIITLLEKNNQYSLTKSAENADILILNTCSIREKAQEKVFHQLGR 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + +KN+ K +++ V GCVA EG+EI +R+ V+++ G QT +RLP++++ Sbjct: 65 WKKIKNNNPK----VIIAVGGCVATQEGKEIFKRANYVDIIFGTQTLHRLPKMIDEVEKK 120 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +++ +D + +KF+ +K+G TA ++I EGC+K+C+FCVVPYTRG EISR Sbjct: 121 RKLSIDISFPKLEKFKYFLAP-----KKKGYTADISIMEGCNKYCSFCVVPYTRGNEISR 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 V+ E L G+ EI LLGQNVNA++G +G+ C FS+L+ ++EI G+ R+R+ Sbjct: 176 PCDDVLFEISLLAKQGIKEINLLGQNVNAYQGPTFNGKVCYFSELIRLVAEIDGIERIRF 235 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTS+P + +D +I+ + D L+ +LHLPVQSGS++IL M R +T +Y II ++ Sbjct: 236 TTSNPLEFTDDIIEVYKDTPKLVSFLHLPVQSGSNKILNLMKRSYTTEDYTSIIKKLTIA 295 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RPDI ISSDFIVGFPGE++ DF T++ + I + +FSF YS R GTP SNM + +D Sbjct: 296 RPDIQISSDFIVGFPGESEIDFEKTIEFIKNINFDMSFSFIYSARPGTPASNMNDDLDLK 355 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKN 444 K RL LQ+++ Q + ++ G I VL+E K L GR+ + V + Sbjct: 356 EKKRRLYILQERINIQTMLWSRKMFGSIQSVLVEGVSDKNIMDLYGRTENNRVVTFQGSS 415 Query: 445 HNIGDIIKVRITDVKISTLYGEL 467 IG + V+I V +L GEL Sbjct: 416 KMIGQFVNVKIKKVHTHSLKGEL 438 >gi|319790575|ref|YP_004152208.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans HB-1] gi|317115077|gb|ADU97567.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans HB-1] Length = 442 Score = 343 bits (880), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 183/445 (41%), Positives = 279/445 (62%), Gaps = 12/445 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +RFF+K++GCQMNV DS +M + GYE+ + ++AD++++NTC +R K K YSF+ Sbjct: 3 KRFFIKTFGCQMNVNDSEKMAGLLRDMGYEKAQTPEEADIVIVNTCSVRAKPDNKAYSFI 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++ LK R DL+V VAGCV Q E E+ILR P V++V G + +LP+LLER + Sbjct: 63 GNLKRLKKRR----PDLVVAVAGCVPQKEKEQILR-FPHVDLVFGTFNFVKLPQLLERVK 117 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 RVV+ + E+L +VD + A++T+Q GC++FCT+C+VP+TRG E S Sbjct: 118 REGRVVEILNRKIPEEEKLPLVDSYL--ENPFIAYVTVQRGCNRFCTYCIVPFTRGRERS 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + VV+E ++L + GV E+ LLGQNV+ + +G D +DLLY +SE++G+ R+R Sbjct: 176 VAPHLVVEEVKRLAERGVKEVHLLGQNVDFYGYQGTD-----LADLLYMVSEVEGVERVR 230 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP S+ + +A D+ + PY+HLP QSGS+R+L+ MNR +T EY + + +R Sbjct: 231 FTTSHPAGFSERIARAIRDIPKVCPYVHLPPQSGSNRVLERMNRGYTREEYIEKVQMLRE 290 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P++A+S DFIVGFPGET++DF T+ LV++ + QAF F+YSPR T + + V + Sbjct: 291 FVPNVALSGDFIVGFPGETEEDFEQTLSLVEECVFDQAFVFEYSPRPFTKAATFKDDVPK 350 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK RL LQ+ +++Q + N VG++ EVLIE + +L GR+ + V + Sbjct: 351 EVKNRRLQTLQELVKKQALERNLERVGKVEEVLIEGFSPKGSELYGRTADNKPVAVEGSE 410 Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469 IG ++V IT L G+ V Sbjct: 411 ELIGKTVEVEITQASPFFLKGKPVT 435 >gi|15605821|ref|NP_213198.1| hypothetical protein aq_284 [Aquifex aeolicus VF5] gi|6226354|sp|O66638|MIAB_AQUAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|2982992|gb|AAC06605.1| hypothetical protein aq_284 [Aquifex aeolicus VF5] Length = 440 Score = 343 bits (880), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 186/451 (41%), Positives = 289/451 (64%), Gaps = 24/451 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++FF+K++GCQMN DS R+ + + GYE+ ++ ++ADLI+LNTC IREK +KV S L Sbjct: 3 KKFFIKTFGCQMNFNDSERIRGLLKTIGYEQTDNWEEADLIILNTCTIREKPDQKVLSHL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G + +K K L+ VAGC+AQ G E+++++P+++++ ++LPEL+ +A+ Sbjct: 63 GEYKKIKEKNPK----ALIAVAGCLAQRTGWELVKKAPVIDIMFSSFNMHQLPELINQAQ 118 Query: 145 FGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G + ++D EDK I + R A++TI +GCDK CT+CVVP TRG Sbjct: 119 AGYKAIAILDELPQDEDK-----IWEYPVERDNKYCAYVTIIKGCDKNCTYCVVPRTRGK 173 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGL 260 E SR+L ++DE ++L+D+GV EI LLGQNV AW G D EK FS+LLY +S+I G+ Sbjct: 174 ERSRALHSILDEVKRLVDDGVREIHLLGQNVTAW---GKDFEKPIPFSELLYQVSKIDGV 230 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TT HPRD++D +I+A D+ + LHLP Q+GS+RIL M+R +T EY + I+ Sbjct: 231 ERIRFTTGHPRDLTDDIIEAMADIPQVCNALHLPFQAGSNRILALMDRGYTKEEYLEKIE 290 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +++ DIA+S+D IVGFP ET++DF T+D++ K+ + Q FSFK+SPR GTP + M Sbjct: 291 KLKEKVKDIAMSTDVIVGFPTETEEDFEHTLDVLKKVRFEQVFSFKFSPRPGTPAAEMEG 350 Query: 381 QVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 Q+ ++VK E RLL LQK + + + G + EVL+E+ ++ G+L+GR+ + Sbjct: 351 QIPDDVKTERMRRLLELQKSILSEIAKKYE---GTVQEVLVEE--EKNGELIGRTTTNKW 405 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +G I+K+++ +L GEL+ Sbjct: 406 ASFKGDPSLLGKIVKIKVIKSSPFSLEGELL 436 >gi|145641843|ref|ZP_01797418.1| hypothetical protein CGSHiR3021_01197 [Haemophilus influenzae R3021] gi|145273465|gb|EDK13336.1| hypothetical protein CGSHiR3021_01197 [Haemophilus influenzae 22.4-21] Length = 328 Score = 343 bits (880), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 170/332 (51%), Positives = 232/332 (69%), Gaps = 11/332 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+ +K++GCQMN YDS +M D+ S G E + ++AD+++LNTC IREKA EKV+ Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK K +L++ V GCVA EGE I R+P V+++ GPQT +RLPE++ + Sbjct: 63 LGRWKELK----KNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQI 118 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E Sbjct: 119 RGGKSSVVDVSFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV E+ LLGQNVNA+RG DG+ C+F++LL ++ I G+ R Sbjct: 174 VSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+TTSHP + +D +I + D L+ +LHLPVQ+GSDR+L M R HTA EY+ II ++ Sbjct: 234 LRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRAHTALEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 R+VRPDI ISSDFIVGFPGET +DF TM+L+ Sbjct: 294 RAVRPDIQISSDFIVGFPGETAEDFEQTMNLI 325 >gi|328952579|ref|YP_004369913.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Desulfobacca acetoxidans DSM 11109] gi|328452903|gb|AEB08732.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Desulfobacca acetoxidans DSM 11109] Length = 440 Score = 343 bits (880), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 188/444 (42%), Positives = 280/444 (63%), Gaps = 15/444 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++K+YGCQMNVYDS ++ + + Y+ + ++ADL ++NTC IR K+ EKV S + Sbjct: 6 KNLYIKTYGCQMNVYDSEQIA-LILGRDYDLTDRPEEADLYLINTCSIRRKSEEKVLSLV 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143 GR++ LKN R + +L+ V GCVAQ EGE +L+R+P +++V G Q YRLP LL +R Sbjct: 65 GRLKGLKNRRPQ----MLLGVGGCVAQQEGERLLQRAPHLDLVFGAQGIYRLPHLLHQRL 120 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK VVDT +S + + + G + +TI +GC+ +CT+CVVPY RG E Sbjct: 121 ESGKAVVDTSFSADLPYISGQVKPGAPKK------LVTIMQGCNNYCTYCVVPYVRGPER 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++V++E + + G E+TLLGQNVN++ GKGL + +F LL L+++ GLVRL Sbjct: 175 SRPAAEVINEVQDFLRQGGQEVTLLGQNVNSY-GKGL-ADGLSFPGLLRRLAKLPGLVRL 232 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHPRD+SD LI +L L ++HLPVQ+GS+ IL M+R +T EY ++R+R Sbjct: 233 RFTTSHPRDLSDDLICCFAELPPLCDHIHLPVQAGSNHILARMHRGYTREEYLHKVNRLR 292 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P I++++D IVGFPGET+ DF T+ L+ ++ + AF FKYSPR T + +++Q+ Sbjct: 293 QICPGISLTTDLIVGFPGETEADFADTLALMREVAFDAAFYFKYSPRPQTAAAALVDQIP 352 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNS 442 E VKAERL L+ E ++ N VGQ EVL+E K++ +L GR Q V + Sbjct: 353 EPVKAERLARLRILQEELSLASNQRLVGQFKEVLVEGLSKQQNQQLCGRLRSNQVVNFDG 412 Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466 IG ++ VRI + +L G Sbjct: 413 PQDLIGRMVWVRIEKANLHSLGGH 436 >gi|94501476|ref|ZP_01307995.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanobacter sp. RED65] gi|94426441|gb|EAT11430.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanobacter sp. RED65] Length = 425 Score = 343 bits (879), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 179/411 (43%), Positives = 264/411 (64%), Gaps = 11/411 (2%) Query: 50 SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109 S E ++ ++AD+++LNTC IREKA EKV+ LGR LK ++ DL++ V GCV Sbjct: 8 SHAMEITDNPEEADVLLLNTCSIREKAQEKVFHQLGRWNKLK----EKNPDLVIGVGGCV 63 Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169 A EG+ I +R+P V++V GPQT +RLPE ++ ++ VVD + +KF+ L Sbjct: 64 ASQEGDAIRKRAPQVDMVFGPQTLHRLPEFVDASKNSIPVVDITFPEIEKFDHLP----- 118 Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229 + G +AF++I EGC K+CTFCVVPYTRG E+SR + V+ E +L GV E+ LLG Sbjct: 119 APKVEGASAFVSIMEGCSKYCTFCVVPYTRGEEVSRPFADVMREVEQLAAQGVREVNLLG 178 Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289 QNVNA++G+ DG+ ++L+ +++E++G+ R+R+TTSHP + SD LI+ + ++ L+ Sbjct: 179 QNVNAYQGQTDDGDIADLAELITAVAEVEGIDRIRFTTSHPVEFSDSLIQVYAEVPELVS 238 Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349 +LHLPVQSGS+RIL +M R H Y I+RI+ +RPDI+ISSDFI+GFPGETD+DF Sbjct: 239 HLHLPVQSGSNRILSAMKRGHEIDMYIDKINRIKKLRPDISISSDFIIGFPGETDEDFED 298 Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409 TM+L+ +IG+ +FSF YS R GTP S + ++ E+VK +RL LQ ++ + Sbjct: 299 TMNLIAEIGFDISFSFIYSARPGTPASELKDETPEDVKKQRLSILQNRITQNAQQIARRM 358 Query: 410 VGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDV 458 VG VL+ K+ G+L GR+ + V + IG +K RI D Sbjct: 359 VGNTETVLVTGVSKKDPGQLQGRTENNRVVNFRCDDQTLIGKFVKTRIEDA 409 >gi|239994932|ref|ZP_04715456.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alteromonas macleodii ATCC 27126] Length = 332 Score = 342 bits (878), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 170/341 (49%), Positives = 237/341 (69%), Gaps = 10/341 (2%) Query: 58 SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117 S ++AD+I+LNTC IREKA EKV+ LGR + LK + +L++ V GCVA EG+ I Sbjct: 1 SAEEADVILLNTCSIREKAQEKVFHQLGRWKTLKQDK----PELIIGVGGCVASQEGDTI 56 Query: 118 LRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176 +R+P V++V GPQT +RLPE++ + + G K V+D + +KF+RL R G Sbjct: 57 RQRAPFVDLVFGPQTLHRLPEMINQLQGGAKSVIDVSFPEIEKFDRLP-----EPRAEGP 111 Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236 TAF++I EGC K+CTFCVVPYTRG E+SR + V+ E +L GV E+ LLGQNVNA+R Sbjct: 112 TAFVSIMEGCSKYCTFCVVPYTRGEEVSRPVDDVLLEIAQLAGQGVREVNLLGQNVNAYR 171 Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 G+ DG C FS+LL ++ I G+ R+RYTTSHP + +D +I+A+ + L+ +LHLPVQ Sbjct: 172 GENYDGTICRFSELLELVAAIDGIDRIRYTTSHPVEFTDDIIEAYASIPELVDHLHLPVQ 231 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 SGSDRIL M R HTA EY+ + +++ +RP+I++SSDFI+GFPGETD DF ATMDL+ Sbjct: 232 SGSDRILNLMKRGHTAIEYKSKMRKLKKIRPNISLSSDFIIGFPGETDADFEATMDLIQA 291 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK 397 + Y +FSF YS R GTP ++ ++ V E K +RL LQ++ Sbjct: 292 VDYDLSFSFIYSARPGTPAADAVDDVSEETKKQRLHLLQQR 332 >gi|86158777|ref|YP_465562.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anaeromyxobacter dehalogenans 2CP-C] gi|123736702|sp|Q2IKE9|MIAB_ANADE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|85775288|gb|ABC82125.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaeromyxobacter dehalogenans 2CP-C] Length = 464 Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 193/457 (42%), Positives = 273/457 (59%), Gaps = 32/457 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +V ++GCQMN DS RM ++ Y R S D+ADLI+LNTC +REKA +K+ S L Sbjct: 27 RKVYVHTFGCQMNESDSDRMVELLGRHAYARAASADEADLILLNTCAVREKAEQKLLSAL 86 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR R +K R L+ V+GCVAQ E + +L R P V+ V GP RLPE++ERAR Sbjct: 87 GRYREVKARR-----GALIAVSGCVAQQEKDRLLARVPYVDFVFGPDNIARLPEMVERAR 141 Query: 145 FGKRVVDTDY--SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+R +T + S E F R D R R TAF+T +GCD C FC+VP+TRG E Sbjct: 142 -GERFAETGWMDSEEYVFPR---ADAEAARGRA-TAFVTAMKGCDNVCAFCIVPHTRGRE 196 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR VV E L GV E+TL+GQNVN++ G CTF+DLL ++ + G+ R Sbjct: 197 VSRPFPDVVAECAALAAVGVREVTLIGQNVNSY------GGGCTFADLLRRVAAVPGIDR 250 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP D+S L++ D +MP+ HLPVQSGSD +L+ M R ++ EY DR+ Sbjct: 251 IRFTTSHPHDLSGALVEVFRDEPKVMPHFHLPVQSGSDAVLRRMRRDYSVAEYLDRFDRL 310 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RP IAI++DFIVGFPGETD DF A++ L+++ + Q+FSF +SPR T + L Sbjct: 311 RAARPGIAITTDFIVGFPGETDADFEASLALLERARFEQSFSFVFSPRPHTVAAVRLGSA 370 Query: 383 DEN---------VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 E + ERLL Q+++ + ++ A +G+++EVL+E E G+ +GR+P Sbjct: 371 PEWQDVPRDVAVARLERLLAAQRRIAGEILA---AELGKVVEVLVEGPSDEPGERLGRTP 427 Query: 434 WLQSVVLNSKNHNIGDI--IKVRITDVKISTLYGELV 468 + V L + + VRIT S+L G L Sbjct: 428 ENRVVHLTADEAAAPAGARVPVRITRAGGSSLSGTLA 464 >gi|300814699|ref|ZP_07094949.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511172|gb|EFK38422.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 467 Score = 341 bits (874), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 185/440 (42%), Positives = 278/440 (63%), Gaps = 13/440 (2%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GCQMN +DS +++ + GY+ + ++ADL++LNTC +R A +KVY LG ++ Sbjct: 34 VITHGCQMNEHDSEKIKWLLEKMGYKLIEDDNEADLVILNTCSVRHSAEDKVYGQLGSLK 93 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +LK + +L V V GC+ Q A + ++ + V+++ G ++LPELL ++ G Sbjct: 94 HLKTT----NKNLKVAVCGCMMQRQASRDYVIEKFENVDIIFGTNNIWKLPELLYKSYNG 149 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++ +++K+ L + G NR +++ I GC+ FCTFC+VPYTRG E SR Sbjct: 150 QKL---SMDIQNKYLDLD-NNLGANRLYSYKSYVNIMYGCNNFCTFCIVPYTRGREKSRE 205 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 ++VDE + LID G EITLLGQNVN++ G+GL+ K TF+ LLY +++IKG+ R+R+ Sbjct: 206 ADEIVDEIKSLIDKGSKEITLLGQNVNSY-GRGLEN-KTTFAQLLYRINDIKGVERIRFM 263 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHP+D+SD LI A DLD L +LHLPVQ+GS RILK MNR++T +Y + ID+IR V Sbjct: 264 TSHPKDISDELIYAFRDLDHLCNFLHLPVQAGSSRILKLMNRKYTKEDYLRKIDKIRQVN 323 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDIA+S+D +VGFPGET++DF T+DLV ++ Y +F+F YS R GTP + L QV + + Sbjct: 324 PDIALSTDIMVGFPGETEEDFEETLDLVKRVEYDTSFTFLYSMRSGTPAAKSLNQVPDKI 383 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNH 445 K ER L L Q N + + ++VL E K+ K+ GR+ + V N Sbjct: 384 KHERFQKLLDILYPIQYEKNKKFINKTVKVLGEDISKKDSRKISGRNDEFKLVNFNGSAE 443 Query: 446 NIGDIIKVRITDVKISTLYG 465 +IG I+ V+IT V + G Sbjct: 444 DIGKIVNVKITSVNSFAMEG 463 >gi|167045585|gb|ABZ10235.1| putative uncharacterized protein family UPF0004 [uncultured marine crenarchaeote HF4000_APKG10I20] Length = 472 Score = 341 bits (874), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 186/459 (40%), Positives = 285/459 (62%), Gaps = 21/459 (4%) Query: 19 DQCIVPQRFFVK-----SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 D+ I Q F +K ++GCQMNV D+ RME + F GY+R +DADLI++NTC IR Sbjct: 12 DRAIPLQSFHMKQVYLDTFGCQMNVADTDRMELVLFHSGYQRTLEKEDADLILVNTCSIR 71 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133 EKA +K +S G ++ LK + DL++ + GC+ Q EGE++L+R P ++ V+GP Sbjct: 72 EKAEQKTFSLFGGLKPLKMANP----DLILGLTGCLGQQEGEKLLKRMPYLDFVIGPDQV 127 Query: 134 YRLPELLERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 + + ++R R GK V T + ++K + + + G +AF+ I +GCDKFCTF Sbjct: 128 EGIAQAVDRVRNTGKTFVWTGFD-QEKVYSIPELSRDLPKAPGPSAFVNIIKGCDKFCTF 186 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 CVVP+TRG E SR ++ +E R L+++G EI LLGQNVN++ +GL + F +LLY Sbjct: 187 CVVPFTRGREKSREPEELFEEIRHLVNHGAKEIILLGQNVNSYGKRGLK-KPVPFHELLY 245 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 ++EI G+ RLR+TTSHP D + I+A+ DLD+LM +LHLPVQSG++++LK+M R HT Sbjct: 246 GIAEIPGVQRLRFTTSHPNDFTRDTIRAYRDLDILMNHLHLPVQSGNNQMLKAMRRDHTI 305 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 EY ++ ++S P I++S+D IVGFPGETD+ F T+ +++++GY+ +F F YSPR G Sbjct: 306 EEYLDLLAELKSEVPGISLSTDIIVGFPGETDEAFGDTLKIMEEVGYSSSFMFAYSPRPG 365 Query: 373 TPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 TP + + + V E K RL + LQ + +QQ + +G+ +EVLIE + G + Sbjct: 366 TPANELSDSVPEETKKRRLQEIIALQSRQTKQQ---GQSFIGKNVEVLIEGRSSKPGYVY 422 Query: 430 -GRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYG 465 GR+P +V + G+ + V + V +L G Sbjct: 423 KGRNPQYWNVNIQGGEGILQAGETVTVLVKQVSGHSLNG 461 >gi|220916715|ref|YP_002492019.1| RNA modification enzyme, MiaB family [Anaeromyxobacter dehalogenans 2CP-1] gi|219954569|gb|ACL64953.1| RNA modification enzyme, MiaB family [Anaeromyxobacter dehalogenans 2CP-1] Length = 464 Score = 341 bits (874), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 195/458 (42%), Positives = 275/458 (60%), Gaps = 32/458 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ +V ++GCQMN DS RM ++ Y R S D+ADLI+LNTC +REKA +K+ S Sbjct: 26 PRKVYVHTFGCQMNESDSDRMVELLGRHAYARAASADEADLILLNTCAVREKAEQKLLSA 85 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R +K R L+ V+GCVAQ E + +L R P V+ V GP RLPE++ERA Sbjct: 86 LGRYREVKARR-----GALIAVSGCVAQQEKDRLLARVPYVDFVFGPDNIGRLPEMVERA 140 Query: 144 RFGKRVVDTDY--SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R +R +T + S E F R D R R VTAF+T +GCD C FC+VP+TRG Sbjct: 141 R-DERFAETGWMDSEEYVFPR---ADPEAARGR-VTAFVTAMKGCDNVCAFCIVPHTRGR 195 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR VV E L GV E+TL+GQNVN++ G CTF+DLL ++ + G+ Sbjct: 196 EVSRPFPDVVAECAALAGVGVREVTLIGQNVNSYTGG------CTFADLLRRVAAVPGID 249 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP D+SD L++ D +MP+ HLPVQSGSD +L+ M R ++ EY DR Sbjct: 250 RIRFTTSHPHDLSDALVEVFRDEPKVMPHFHLPVQSGSDAVLRRMRRDYSVAEYLDRFDR 309 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RP IAI++DFIVGFPGETD DF A++ L+++ + Q+FSF +SPR T + L Sbjct: 310 LRAARPGIAITTDFIVGFPGETDADFEASLALLERARFEQSFSFVFSPRPHTVAAVRLGS 369 Query: 382 VDEN---------VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 E + ERLL Q+++ + ++ +G+++EVL+E E G+ +GR+ Sbjct: 370 APEWQDVPRGTAVARLERLLAAQRRIAGEILAGE---LGKVVEVLVEGPSDEPGERLGRT 426 Query: 433 PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 P + V L + G + VRIT S+L G L Sbjct: 427 PENRVVHLAADEAAAPAGARVAVRITRAGGSSLSGTLA 464 >gi|167044878|gb|ABZ09545.1| putative uncharacterized protein family UPF0004 [uncultured marine crenarchaeote HF4000_APKG8D22] Length = 451 Score = 340 bits (873), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 181/448 (40%), Positives = 282/448 (62%), Gaps = 16/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++ ++GCQMNV D+ RME + F GY+R +DADLI++NTC IREKA +K +S Sbjct: 2 KQVYLDTFGCQMNVADTDRMELVLFHSGYQRTLEKEDADLILVNTCSIREKAEQKTFSLF 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++ LK + DL++ + GC+ Q EGE++L+R P ++ V+GP + + ++R R Sbjct: 62 GGLKPLKMANP----DLILGLTGCLGQQEGEKLLKRMPYLDFVIGPDQVEGIAQAVDRVR 117 Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK V T + ++K + + + G +AF+ I +GCDKFCTFCVVP+TRG E Sbjct: 118 NTGKTFVWTGFD-QEKVYSIPELSRDLPKAPGPSAFVNIIKGCDKFCTFCVVPFTRGREK 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ +E R L+++G EI LLGQNVN++ +GL + F +LLY ++EI G+ RL Sbjct: 177 SREPEELFEEIRHLVNHGAKEIILLGQNVNSYGKRGLK-KPVPFHELLYGIAEIPGVQRL 235 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D + I+A+ DLD+LM +LHLPVQSG++++LK+M R HT EY ++ ++ Sbjct: 236 RFTTSHPNDFTRDTIRAYRDLDILMNHLHLPVQSGNNQMLKAMRRDHTIEEYLDLLAELK 295 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S P I++S+D IVGFPGETD+ F T+ +++++GY+ +F F YSPR GTP + + + V Sbjct: 296 SEVPGISLSTDIIVGFPGETDEAFGDTLKIMEEVGYSSSFMFAYSPRPGTPANELSDSVP 355 Query: 384 ENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVV 439 E K RL + LQ + +QQ + +G+ +EVLIE + G + GR+P +V Sbjct: 356 EETKKRRLQEIIALQSRQTKQQ---GQSFIGKNVEVLIEGRSSKPGYVYKGRNPQYWNVN 412 Query: 440 LNSKNH--NIGDIIKVRITDVKISTLYG 465 + G+ + V + V +L G Sbjct: 413 IQGGEGILQAGETVTVLVKQVSGHSLNG 440 >gi|51245779|ref|YP_065663.1| hypothetical protein DP1927 [Desulfotalea psychrophila LSv54] gi|81641932|sp|Q6ALW9|MIAB_DESPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|50876816|emb|CAG36656.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 447 Score = 340 bits (871), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 186/449 (41%), Positives = 282/449 (62%), Gaps = 16/449 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF+K+YGCQMN+ DS + + + GY + + ADL++LNTC IR KA +KV S LG Sbjct: 6 FFIKTYGCQMNLRDSEIIAQILNNNGYVETSEIGGADLVLLNTCSIRAKAEQKVMSKLGE 65 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R +N +I + + VAGCVAQ EG++I + P V++V+G Q Y + ELLER+R Sbjct: 66 LR--RNKKINP--RMQICVAGCVAQQEGKQIQAKMPHVDLVIGTQYIYAINELLERSRTE 121 Query: 147 KRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + T+ ++DK+ + G + F+TI +GC+ FCT+CVVPYTRG E+S Sbjct: 122 GPITATN--LDDKYVIPQFIPETTGKEHEGEFRKFVTIMQGCNNFCTYCVVPYTRGREVS 179 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---DGEKCTFSDLLYSLSEIKGLV 261 RS+ +V+E L+ +G+ EITLLGQNVN++ D TFSDLL ++ ++GL Sbjct: 180 RSIKDIVEEITVLVKSGIKEITLLGQNVNSYAQTNTVTEDDTPATFSDLLRQVAAVEGLK 239 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR+TTS+P+D+S+ L++ DLDVL P HLPVQ+GS+++LK M R++T Y ++ + Sbjct: 240 RLRFTTSNPKDLSNDLMQCFKDLDVLCPQFHLPVQAGSNKVLKEMGRKYTVESYLDLVTQ 299 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P+IAI++D IVGFPGETD++F TM +++ + Y +FSFKYS R GT + + + Sbjct: 300 LRENCPEIAITTDIIVGFPGETDEEFEETMKMLETVRYHGSFSFKYSDRPGTKANELTNK 359 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVV 439 VDE+VK+ RL Q + E + N +G EVLIE + G+ KG++ G + + ++ Sbjct: 360 VDESVKSARLARFQARQDEIGLERNQEYIGTTQEVLIEELRDGEIKGRM-GTNHIVHAIG 418 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 L +K GD + +T +L G +V Sbjct: 419 LTNKKP--GDFLMAHVTAAGQHSLRGSIV 445 >gi|323143878|ref|ZP_08078542.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Succinatimonas hippei YIT 12066] gi|322416350|gb|EFY07020.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Succinatimonas hippei YIT 12066] Length = 452 Score = 340 bits (871), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 186/444 (41%), Positives = 275/444 (61%), Gaps = 11/444 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F V +GCQMNVYD+ R+ D+ S G+ + ++AD+IVL TC +R KA +KV++ + Sbjct: 17 FHVAVWGCQMNVYDADRIRDLLSSAGFMETSLPNNADIIVLVTCAVRAKAEDKVFN---Q 73 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARF 145 I + K + + ++ + GCV EEI+ VN+V GP+T + LPE++ E Sbjct: 74 IASWKAKGVI-NANTVIALGGCVGSELAEEIINFDKNVNIVFGPRTVHHLPEMIREFLDT 132 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G VV+ +KF+ S+ + G +RG +AF+TI EGC C++C+VPYTRG E SR Sbjct: 133 GTPVVNVKGDALEKFD--SLPNPG---RRGPSAFVTIMEGCSNKCSYCIVPYTRGEEESR 187 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +++E + I NGV EI LLGQNVN++RG +G C+FS+LLY ++ + G+ RLR+ Sbjct: 188 PEKDILEEIKIHIANGVKEIHLLGQNVNSYRGISDNGFTCSFSELLYEIAAVNGVERLRF 247 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTS+P + +D +++A DLDV+ +H+PVQSGSDRIL+ M RR+T+ YR++I ++R Sbjct: 248 TTSNPMEFTDDIVQAFADLDVIADAVHIPVQSGSDRILELMRRRYTSDSYRELIAKLRKA 307 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RP I +S+D IVGFPGETDDDF TM LVD I + Q+FSF YS R GTP + + + + Sbjct: 308 RPQIHVSTDIIVGFPGETDDDFAKTMSLVDDIKFDQSFSFIYSKRPGTPAAVLEDPISAE 367 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKN 444 VK RL LQ +L E ++++ + VL+E K+ +L GR+ + VV Sbjct: 368 VKKSRLYTLQARLEEYALTYSQKMLNTRQRVLVEGVSRKDANELKGRASNNRIVVFEGST 427 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG + V I V TL G+L+ Sbjct: 428 DLIGSMADVDIIKVMSHTLKGQLI 451 >gi|282882002|ref|ZP_06290643.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus lacrimalis 315-B] gi|281298032|gb|EFA90487.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus lacrimalis 315-B] Length = 467 Score = 340 bits (871), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 184/440 (41%), Positives = 278/440 (63%), Gaps = 13/440 (2%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GCQMN +DS +++ + GY+ + ++ADL++LNTC +R A +KVY LG ++ Sbjct: 34 VITHGCQMNEHDSEKIKWLLEKMGYKLIEDDNEADLVILNTCSVRHSAEDKVYGQLGSLK 93 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQ--AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +LK + +L V V GC+ Q A + ++ + V+++ G ++LPELL ++ G Sbjct: 94 HLKTT----NKNLKVAVCGCMMQRQASRDYVIEKFENVDIIFGTNNIWKLPELLYKSYNG 149 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++ +++K+ L + G NR +++ I GC+ FCTFC+VPYTRG E SR Sbjct: 150 QKL---SMDIQNKYLDLD-NNLGANRLYSYKSYVNIMYGCNNFCTFCIVPYTRGREKSRE 205 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 ++VDE + LID G EITLLGQNVN++ G+GL+ K +F+ LLY +++IKG+ R+R+ Sbjct: 206 ADEIVDEIKSLIDKGSKEITLLGQNVNSY-GRGLEN-KTSFAQLLYRINDIKGVERIRFM 263 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHP+D+SD LI A DLD L +LHLPVQ+GS RILK MNR++T +Y + ID+IR V Sbjct: 264 TSHPKDISDELIYAFRDLDHLCNFLHLPVQAGSSRILKLMNRKYTKEDYLRKIDKIRQVN 323 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDIA+S+D +VGFPGET++DF T+DLV ++ Y +F+F YS R GTP + L QV + + Sbjct: 324 PDIALSTDIMVGFPGETEEDFEETLDLVKRVEYDTSFTFLYSMRSGTPAAKSLNQVPDKI 383 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNH 445 K ER L L Q N + + ++VL E K+ K+ GR+ + V N Sbjct: 384 KHERFQKLLDILYPIQYEKNKKFINKTVKVLGEDISKKDSRKISGRNDEFKLVNFNGSAE 443 Query: 446 NIGDIIKVRITDVKISTLYG 465 +IG I+ V+IT V + G Sbjct: 444 DIGKIVNVKITSVNSFAMEG 463 >gi|118594514|ref|ZP_01551861.1| tRNA-i(6)A37 modification enzyme MiaB [Methylophilales bacterium HTCC2181] gi|118440292|gb|EAV46919.1| tRNA-i(6)A37 modification enzyme MiaB [Methylophilales bacterium HTCC2181] Length = 441 Score = 339 bits (870), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 181/447 (40%), Positives = 274/447 (61%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS ++ D+ S S D AD+I+LNTC IRE+A KVYS Sbjct: 3 KQLFIKTFGCQMNEYDSEKIVDVLKESSKISLTESPDHADIIILNTCSIRERAEVKVYSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 LGR R LK + ++ + V GCVA EGE I++R+P V++V GPQT +RLP LL+ R Sbjct: 63 LGRYRKLKEN----NPNIRIAVGGCVASQEGENIIKRAPYVDLVFGPQTLHRLPSLLKKR 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +D + +KF+ L I + +G +A ++I EGC K+C+FCVVPYTRG E Sbjct: 119 ELLGTPQIDITFPEIEKFDSLPIT-----QFKGPSASVSIMEGCSKYCSFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR L ++DE +L GV EITLLGQNVNA+RG+ C F+ LL ++EI + R Sbjct: 174 ISRPLDDILDEIIELTMIGVQEITLLGQNVNAYRGQSQHNGVCDFATLLEYVAEINEVKR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP +M++ LI G ++ L HLP+QSGSDR+L +M R +T EY+ II ++ Sbjct: 234 IRFTTSHPNEMTEELIACFGKINKLSKQFHLPIQSGSDRVLSAMKRNYTVLEYKSIIKKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + V P+I+++SDFI+GFP ETD++F T +++++ + +FSF YSPR GTP S + + + Sbjct: 294 KKVCPEISLTSDFIIGFPNETDEEFNQTKKIMEEVNFDYSFSFLYSPRPGTPASFIKDNI 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 + K RL Q Q +G +LI++ K K G +G++ + + ++ Sbjct: 354 SKEKKESRLREFQDMNIIQGKKHTLNMIGTKQRILIDRESKRKAGIFLGKTDNNRVIEVD 413 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + + + V+I + L G ++ Sbjct: 414 GSSEILNKFVNVKIKAISEKNLEGIII 440 >gi|313673797|ref|YP_004051908.1| tRNA-i(6)a37 thiotransferase enzyme miab [Calditerrivibrio nitroreducens DSM 19672] gi|312940553|gb|ADR19745.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calditerrivibrio nitroreducens DSM 19672] Length = 438 Score = 339 bits (869), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 187/451 (41%), Positives = 276/451 (61%), Gaps = 22/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++K++GCQMN YDS R+ +F GY++ + ++AD V+NTC +REK EKV S + Sbjct: 3 KKVYIKTFGCQMNEYDSQRILSIFEESGYDKTDDPEEADFAVINTCSVREKPKEKVKSEI 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR++ KNS D + +AGCVAQ +GE IL+ + V++V+G +L E + R Sbjct: 63 GRLKRYKNS----NPDFKIAIAGCVAQEDGEAILKENKSVDLVIGTDGIPKLYEAISRVE 118 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+R+ T++ +D +NR V+AF+TI +GCD FC++C+VPY RG E S Sbjct: 119 KGERLAITEFYHDD------FTVPIFNRNSSVSAFVTIMKGCDNFCSYCIVPYVRGREKS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +++DE + L+DNGV E+T LGQNVN++ GK LD EK F+ LY ++I GL R+R Sbjct: 173 RHYKEILDEVKFLVDNGVREVTFLGQNVNSY-GKTLD-EKINFTQFLYMAAQIDGLNRIR 230 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D ++ L+ + YLHLP+Q+GS+ ILK MNR +T EY + I + Sbjct: 231 FVTSHPKDFNNDLVDLIASERKICEYLHLPLQAGSNDILKKMNRGYTFEEYEEKIFNAKE 290 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +A+SSDFIVGFPGETD+DF T+ V I Y F+FKYSPR GT S+M + + + Sbjct: 291 KIKGLALSSDFIVGFPGETDEDFEQTLKAVKNIEYETIFAFKYSPRPGTKASSMQDNISD 350 Query: 385 NVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIEKHGKEKGKLV-GRSPWLQSVV 439 KA RL KKL + Q D +G+ E+L+E K+ + GR+ + V Sbjct: 351 VEKANRL----KKLLDAQQIITDNLLKRQIGETQEILVEGKSKKDAHVYSGRNRKNRIVN 406 Query: 440 LNS-KNHNIGDIIKVRITDVKISTLYGELVV 469 S K+ G+I+KV+IT K ++L+G L V Sbjct: 407 FTSEKSLQNGEIVKVKITQAKKNSLFGNLEV 437 >gi|251777774|ref|ZP_04820694.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082089|gb|EES47979.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 457 Score = 339 bits (869), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 187/449 (41%), Positives = 279/449 (62%), Gaps = 17/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + FF++++GCQMN DS ++ M SQGYE + D+A +++ NTC +RE A KV+ L Sbjct: 19 KHFFIETWGCQMNEEDSEKLSGMLKSQGYEETENRDEASIVIFNTCCVRENAENKVFGNL 78 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 GR++N K ++ +L++ + GC+ Q +G +EIL R P V+++ G Y+ PE L R Sbjct: 79 GRLKNQK----EKNPNLIIALCGCMMQQKGMADEILSRFPYVDIIFGTHNAYKFPEYLHR 134 Query: 143 ARFGKRVVDTDYSVEDKFER-LSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + V++ F++ IV+G +RK V AF+TI GC+ FCT+CVVPY RG Sbjct: 135 VQV------EGVQVKEIFDKETEIVEGVPIDRKSNVKAFVTIMYGCNNFCTYCVVPYVRG 188 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR + +E ++L+ NG EITLLGQNVN++ GKGL+ E+ TF+ LL ++EI GL Sbjct: 189 RERSRRPEDIENEIKELVSNGYKEITLLGQNVNSY-GKGLE-EEITFAQLLRRINEIGGL 246 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR+ TSHP+D++ ++ A D D L +HLPVQSGS++IL+ MNR + +Y ++ Sbjct: 247 ERLRFMTSHPKDLTLDVVYAIRDCDKLCEQIHLPVQSGSNKILQKMNRHYNKEQYLELAK 306 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +IR PD+ S+D IVGFPGET++DF T++LV ++ Y AF+F YS R TP M Sbjct: 307 KIREEIPDVTFSTDIIVGFPGETEEDFEETINLVKEVRYDAAFTFIYSRRNHTPADKMEN 366 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 Q+ ++VK +R L + E V N A G+I EVL+E K + KL GR+ + V Sbjct: 367 QIPDDVKHDRFNRLVAAVNEGIVVGNKAAEGKIYEVLVEGTSKNNENKLTGRTRNAKLVN 426 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+I + K +L GE+V Sbjct: 427 FDGCKEMIGKLVKVKIIEAKSFSLVGEVV 455 >gi|188589964|ref|YP_001921085.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum E3 str. Alaska E43] gi|229890484|sp|B2V276|MIAB_CLOBA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|188500245|gb|ACD53381.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum E3 str. Alaska E43] Length = 456 Score = 339 bits (869), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 187/446 (41%), Positives = 275/446 (61%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF++++GCQMN DS ++ M SQGYE + D+A +++ NTC +RE A KV+ LGR Sbjct: 20 FFIQTFGCQMNEEDSEKLSGMLKSQGYEETENRDEASIVIFNTCCVRENAENKVFGNLGR 79 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++N K ++ +L++ + GC+ Q +G +EIL R P V+++ G Y+ PE L R + Sbjct: 80 LKNQK----EKNPNLIIALCGCMMQQKGMADEILSRFPYVDIIFGTHNAYKFPEYLHRVQ 135 Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 V + E IV+G +RK V AF+TI GC+ FCT+CVVPY RG E Sbjct: 136 VEGVQVKEIFDKE-----TEIVEGVPIDRKSNVKAFVTIMYGCNNFCTYCVVPYVRGRER 190 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +E ++L+ NG EITLLGQNVN++ GKGL+ E+ TF+ LL ++EI GL RL Sbjct: 191 SRRPEDIENEIKELVSNGYKEITLLGQNVNSY-GKGLE-EEITFAQLLRRINEIDGLERL 248 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D++ ++ A D D L +HLPVQSGS+ IL+ MNR + +Y ++ +IR Sbjct: 249 RFMTSHPKDLTLDVVYAIRDCDKLCEQIHLPVQSGSNEILQKMNRHYNKEQYLELAKKIR 308 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PD+ S+D IVGFPGET++DF T++LV ++ Y AF+F YS R TP M +Q+ Sbjct: 309 EEIPDVTFSTDIIVGFPGETEEDFEETINLVKEVRYDAAFTFIYSRRNHTPADKMEDQIP 368 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442 ++VK +R L + E V N A G+I EVL+E K + KL GR+ + V + Sbjct: 369 DDVKHDRFNRLVAAVNEGIVVGNKAAEGKIYEVLVEGTSKNNENKLTGRTRNAKLVNFDG 428 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG ++KV+I + K +L GE+V Sbjct: 429 CKEMIGKLVKVKIIEAKSFSLVGEVV 454 >gi|290953586|ref|ZP_06558207.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella tularensis subsp. holarctica URFT1] gi|295313087|ref|ZP_06803777.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Francisella tularensis subsp. holarctica URFT1] Length = 427 Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 187/437 (42%), Positives = 274/437 (62%), Gaps = 14/437 (3%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNS 93 MN YDS RM ++ ++ ++ V + D DAD+I++NTC IREKA EKV+ LGR + LK Sbjct: 1 MNEYDSARMHEVL-NEHFDTVKTDDYKDADIILINTCSIREKAQEKVFHELGRWKGLK-- 57 Query: 94 RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDT 152 K DL++ V GCVA EGE I++R+P V++V GPQT +RLPE++++ + ++ VD Sbjct: 58 --KTNEDLIIGVGGCVASQEGENIIKRAPFVDLVFGPQTIHRLPEMIKQKQKSQQSQVDI 115 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 + +KF+ L + G A+++I EGCDK+C++CVVPYTRG E++R V+ Sbjct: 116 SFPEVEKFDYLP-----EPKAEGAKAYVSIMEGCDKYCSYCVVPYTRGPEVNRPFEDVLA 170 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 E L + GV EITLLGQNVN + G +G+ + L++ ++EI G+ R+R+TTSHP + Sbjct: 171 ECAILAEQGVKEITLLGQNVNHYLGPMENGQTADLALLIHFIAEIDGIERIRFTTSHPVE 230 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 S LI A+ + L +LHLPVQ GSDRIL +M R HT E++Q I ++R++RPDI IS Sbjct: 231 FSQNLIDAYATVPELANHLHLPVQHGSDRILINMKRNHTILEFKQKIRKLRAIRPDITIS 290 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 SDFIVGFPGET++DF+ +DLV +I + Q+FSF YS R GTP +++ + VK +RL Sbjct: 291 SDFIVGFPGETEEDFQKLLDLVKEINFDQSFSFIYSKRPGTPAADLPDDTPMEVKKDRLK 350 Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNHNIGDII 451 LQ L + VG +L++ K+ L GR+ + V IG Sbjct: 351 RLQDLLNSNAQIISRQMVGTNQRILVDGTSKKDDNILSGRTENNRVVNFKGDKSLIGQFA 410 Query: 452 KVRITDVKISTLYGELV 468 V+IT+ ++L GEL+ Sbjct: 411 MVKITESLPNSLRGELI 427 >gi|323705356|ref|ZP_08116931.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermoanaerobacterium xylanolyticum LX-11] gi|323535258|gb|EGB25034.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermoanaerobacterium xylanolyticum LX-11] Length = 473 Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 180/448 (40%), Positives = 284/448 (63%), Gaps = 17/448 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F +++YGCQMNV+DS ++ M GY+ ++++DAD+I+ NTC +R+ A +++ + Sbjct: 34 KFHIETYGCQMNVHDSEKLAGMLTEMGYQHTDNLEDADVILFNTCCVRQHAEIRIFGRVS 93 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143 +++ LK + ++++ + GC+ Q + I + P +++V G ++ PE+L+ A Sbjct: 94 QLKELKQRK----PNIILGICGCMMQEKEVVAAIRKDYPYIDMVFGTHNLFKFPEILQEA 149 Query: 144 RFGKRVVDTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +++D +V D ++ S + D R G+ A++ I GC+ FCT+C+VPY RG Sbjct: 150 ------LNSDTTVIDVWDDNSNIVEDIPIRRAEGLKAWVNIIYGCNNFCTYCIVPYVRGR 203 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++DE + L D G EITLLGQNVN++ G L +K F+DLLY ++ I G+ Sbjct: 204 ERSREPKDIIDEIKSLADEGFKEITLLGQNVNSY-GNDL-SQKVDFADLLYMINNINGIE 261 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D+SD LI A DLD + +LHLPVQSGS+RIL+ MNR++T Y +II++ Sbjct: 262 RIRFMTSHPKDISDKLIFAIRDLDKVCEHLHLPVQSGSNRILEKMNRKYTRERYLEIIEK 321 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R PDIAI++D IVGFPGETD+DF+ T+DLV K+ Y A++F YS R GT M +Q Sbjct: 322 LRDNIPDIAITTDIIVGFPGETDEDFQDTLDLVKKVKYDSAYTFIYSKRKGTVAEKMPDQ 381 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 VDE++K +RL L K + N+ G+I+EVL+E K + KL GR+ + V Sbjct: 382 VDEDIKHKRLEELIKLQNSISIEKNNEMNGKIVEVLVEGTSKRDSDKLTGRTRTNKIVHF 441 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +++ IG + V+I + K T+ GEL+ Sbjct: 442 KGESNLIGKFVDVKIIETKAWTMQGELI 469 >gi|197121922|ref|YP_002133873.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anaeromyxobacter sp. K] gi|229890440|sp|B4UK35|MIAB_ANASK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|196171771|gb|ACG72744.1| RNA modification enzyme, MiaB family [Anaeromyxobacter sp. K] Length = 464 Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 194/457 (42%), Positives = 274/457 (59%), Gaps = 32/457 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +V ++GCQMN DS RM ++ Y R S D+ADLI+LNTC +REKA +K+ S L Sbjct: 27 RKVYVHTFGCQMNESDSDRMVELLGRHAYARAASADEADLILLNTCAVREKAEQKLLSAL 86 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR R +K R L+ V+GCVAQ E + +L R P V+ V GP RLPE++ERAR Sbjct: 87 GRYREVKARR-----GALIAVSGCVAQQEKDRLLARVPYVDFVFGPDNIGRLPEMVERAR 141 Query: 145 FGKRVVDTDY--SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +R +T + S E F R D R R VTAF+T +GCD C FC+VP+TRG E Sbjct: 142 -DERFAETGWMDSEEYVFPR---ADPEAARGR-VTAFVTAMKGCDNVCAFCIVPHTRGRE 196 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR VV E L GV E+TL+GQNVN++ G CTF+DLL ++ + G+ R Sbjct: 197 VSRPFPDVVAECAALAGVGVREVTLIGQNVNSYTGG------CTFADLLRRVAAVPGIDR 250 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP D+SD L++ D +MP+ HLPVQSGSD +L+ M R ++ EY DR+ Sbjct: 251 IRFTTSHPHDLSDALVEVFRDEPKVMPHFHLPVQSGSDAVLRRMRRDYSVAEYLDRFDRL 310 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RP IAI++DFIVGFPGETD DF A++ L+++ + Q+FSF +SPR T + L Sbjct: 311 RAARPGIAITTDFIVGFPGETDADFEASLALLERARFEQSFSFVFSPRPHTVAAVRLGSA 370 Query: 383 DEN---------VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 E + ERLL Q+++ + ++ +G+++EVL+E E G+ +GR+P Sbjct: 371 PEWRDVPREAAVARLERLLAAQRRIAGEILAGE---LGKVVEVLVEGPSDEPGERLGRTP 427 Query: 434 WLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 + V L + G + VRIT S+L G L Sbjct: 428 ENRVVHLAADEAAAPAGARVAVRITRAGGSSLSGTLA 464 >gi|254479226|ref|ZP_05092571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Carboxydibrachium pacificum DSM 12653] gi|214034827|gb|EEB75556.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Carboxydibrachium pacificum DSM 12653] Length = 471 Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 184/446 (41%), Positives = 283/446 (63%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + +++YGCQMNV+DS ++ M GY+ ++ AD+++ NTC +RE A +V + + Sbjct: 33 YHIETYGCQMNVHDSEKLAGMLEEMGYKYTEDLEKADVLLFNTCAVREHAEVRVLGRVSQ 92 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ LKN +L++ ++GC+ Q + E I + P V++V G Y+ PELL +A Sbjct: 93 IKELKNR----NPNLIIGISGCMMQEKHIVEAIREKYPHVDIVFGTHNIYKFPELLWQAL 148 Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + +V+D + ++ E L I R + A++ I GC+ FCT+C+VPYTRG E Sbjct: 149 NSRVQVIDVIENTQNVIEGLPI-----RRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E ++L + G EITLLGQNVN++ GK L G+ F+ LLY L++IKG+ R+ Sbjct: 204 SRRPEDIIAEVKELAEKGYKEITLLGQNVNSY-GKDLGGD-INFAKLLYMLNDIKGIERI 261 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD LI A DLD + +LHLPVQ+GS++ILK MNRR+T Y +IID++R Sbjct: 262 RFMTSHPKDISDELIYAMRDLDKVCEHLHLPVQAGSNKILKRMNRRYTREHYLEIIDKVR 321 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PDIAI++D IVGFPGET++DF T+DLV+++ + A++F YS R GTP ++M +QVD Sbjct: 322 ANIPDIAITTDIIVGFPGETEEDFLQTLDLVERVRFDGAYTFMYSKRAGTPAASMPDQVD 381 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442 + VK +RL+ L + + + + G+++EVLIE K + KL R+ + V Sbjct: 382 DEVKKDRLIRLIELQNKISLEKSAELKGKVVEVLIEGVSKRDPNKLTSRTRTNKVVHFIG 441 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+IT+ K T+ GELV Sbjct: 442 DESLIGKLANVKITETKAWTMQGELV 467 >gi|20807803|ref|NP_622974.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis MB4] gi|81481577|sp|Q8RA72|MIAB_THETN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|20516361|gb|AAM24578.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis MB4] Length = 471 Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 184/446 (41%), Positives = 283/446 (63%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + +++YGCQMNV+DS ++ M GY+ ++ AD+++ NTC +RE A +V + + Sbjct: 33 YHIETYGCQMNVHDSEKLAGMLEEMGYKYTEDLEKADVLLFNTCAVREHAEVRVLGRVSQ 92 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ LKN +L++ ++GC+ Q + E I + P V++V G Y+ PELL +A Sbjct: 93 IKELKNR----NPNLIIGISGCMMQEKHIVEAIREKYPHVDIVFGTHNIYKFPELLWQAL 148 Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + +V+D + ++ E L I R + A++ I GC+ FCT+C+VPYTRG E Sbjct: 149 NSRVQVIDVIENTQNVIEGLPI-----RRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E ++L + G EITLLGQNVN++ GK L G+ F+ LLY L++IKG+ R+ Sbjct: 204 SRRPEDIIAEVKELAEKGYKEITLLGQNVNSY-GKDLGGD-INFAKLLYMLNDIKGIERI 261 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD LI A DLD + +LHLPVQ+GS++ILK MNRR+T Y +IID++R Sbjct: 262 RFMTSHPKDISDELIYAMRDLDKVCEHLHLPVQAGSNKILKRMNRRYTREHYLEIIDKVR 321 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PDIAI++D IVGFPGET++DF T+DLV+++ + A++F YS R GTP ++M +QVD Sbjct: 322 ANIPDIAITTDIIVGFPGETEEDFFQTLDLVERVRFDGAYTFMYSKRAGTPAASMPDQVD 381 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442 + VK +RL+ L + + + + G+++EVLIE K + KL R+ + V Sbjct: 382 DEVKKDRLIRLIELQNKISLEKSAELKGKVVEVLIEGVSKRDPNKLTSRTRTNKVVHFIG 441 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+IT+ K T+ GELV Sbjct: 442 DESLIGKLANVKITETKAWTMQGELV 467 >gi|187935420|ref|YP_001886001.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum B str. Eklund 17B] gi|229890485|sp|B2TIA8|MIAB_CLOBB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|187723573|gb|ACD24794.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum B str. Eklund 17B] Length = 456 Score = 336 bits (862), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 186/449 (41%), Positives = 278/449 (61%), Gaps = 17/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + FF++++GCQMN DS ++ M SQGYE + D+A +++ NTC +RE A KV+ L Sbjct: 19 KHFFIETWGCQMNEEDSEKLSGMLKSQGYEETENRDEASIVIFNTCCVRENAENKVFGNL 78 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 GR++N K ++ +L++ + GC+ Q +G +EIL R P V+++ G Y+ PE L R Sbjct: 79 GRLKNQK----EKNPNLIIALCGCMMQQKGMADEILSRFPYVDIIFGTHNAYKFPEYLHR 134 Query: 143 ARFGKRVVDTDYSVEDKFER-LSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + V++ F++ IV+G +RK V AF+TI GC+ FCT+CVVPY RG Sbjct: 135 VQV------EGVQVKEIFDKETEIVEGVPIDRKSNVKAFVTIMYGCNNFCTYCVVPYVRG 188 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR + +E ++L+ +G EITLLGQNVN++ GKGL+ E+ TF+ LL ++EI GL Sbjct: 189 RERSRRPEDIENEIKELVSSGYKEITLLGQNVNSY-GKGLE-EEITFAQLLRRINEIDGL 246 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR+ TSHP+D++ ++ A D D L +HLPVQSGS+ IL+ MNR + +Y ++ Sbjct: 247 ERLRFMTSHPKDLTLDVVYAIRDCDKLCEQIHLPVQSGSNEILQKMNRHYNKEQYLELAK 306 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +IR PD+ S+D IVGFPGET++DF T++LV ++ Y AF+F YS R TP M Sbjct: 307 KIREEIPDVTFSTDIIVGFPGETEEDFEETINLVKEVRYDAAFTFIYSRRNHTPADKMEN 366 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 Q+ ++VK +R L + E V N A G+I EVL+E K + KL GR+ + V Sbjct: 367 QIPDDVKHDRFNRLVAAVNEGIVVGNKAAEGKIYEVLVEGTSKNNENKLTGRTRNAKLVN 426 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+I + K +L GE+V Sbjct: 427 FDGCKEMIGKLVKVKIIEAKSFSLVGEVV 455 >gi|284115804|ref|ZP_06386693.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Poribacteria sp. WGA-A3] gi|283829554|gb|EFC33903.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Poribacteria sp. WGA-A3] Length = 436 Score = 336 bits (861), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 180/445 (40%), Positives = 284/445 (63%), Gaps = 22/445 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++++YGCQMN YDS R+++ G +AD++++NTC IREKA +K S LGR Sbjct: 6 LYLETYGCQMNEYDSDRIQNAL---GASITEDPKEADIVIVNTCAIREKADQKALSSLGR 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 ++LK + +L+V V+GCVAQ GE+++RR P ++ V+GP+ +LP+L+E + Sbjct: 63 FKHLK----AKNPELIVGVSGCVAQLYGEDLIRRIPHLDFVLGPRAIPQLPQLIEEIKEK 118 Query: 147 K-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 K R V+T + +++ F+ L Y+++ AF++IQ+GC+K C +C+VP RG E++R Sbjct: 119 KSRPVETSFDIQEPFDVLP-----YHQEGKPAAFVSIQQGCNKKCAYCIVPTVRGSEVNR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + ++ EAR LI GV EITL+GQ VN+W+ GL F DLL L E+ GL R+R+ Sbjct: 174 PIEDIIAEARYLIAKGVKEITLIGQTVNSWKLGGL-----KFGDLLRVLGELDGLERIRF 228 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTS+PRD++ +++A D+ + ++HLPVQSGSD++L+ MNR ++ Y ++R+R Sbjct: 229 TTSYPRDITKKMVEAMADVPKVCRHIHLPVQSGSDKVLRLMNRTYSRSWYIDSVNRLRDA 288 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML---EQV 382 P+IA+SSD IVGFPGET+DDF TM LV+++G+ +FSFKYSPR GT G + E+V Sbjct: 289 MPNIAVSSDIIVGFPGETEDDFEQTMSLVEEVGFDSSFSFKYSPRPGTVGEELWRSGERV 348 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLN 441 +++ +RL LQ+ R + N +G+ +VL+E K+ L GR+ + V Sbjct: 349 EDSTAGQRLARLQEYQRAITLEKNAQRIGKSEQVLVEDASRKDSSWLSGRTEHNRIVNFP 408 Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466 + IG ++ VRIT+ ++L G+ Sbjct: 409 GEKELIGKMVDVRITEGLANSLRGQ 433 >gi|153831444|ref|ZP_01984111.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae 623-39] gi|148873074|gb|EDL71209.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae 623-39] Length = 375 Score = 335 bits (860), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 178/378 (47%), Positives = 252/378 (66%), Gaps = 11/378 (2%) Query: 36 MNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS +M D+ + GYE ++AD+++LNTC IREKA EKV+ LGR + LK+ + Sbjct: 1 MNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKK 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTD 153 +++ V GCVA EG+ I R+P V+V+ GPQT +RLPE++++++ V+D Sbjct: 61 ----PGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQTSDAPVMDIS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+RL R G TAF++I EGC K+CT+CVVPYTRG E+SR + V+ E Sbjct: 117 FPEIEKFDRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +L + GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R+R+TTSHP + Sbjct: 172 IAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGIDRIRFTTSHPLEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++R RPDI ISS Sbjct: 232 TDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFIVGFPGETD DF+ TM L+ + + +FSF +SPR GTP ++ + E VK ERL Sbjct: 292 DFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYE 351 Query: 394 LQKKLREQQVSFNDACVG 411 LQ+++ Q + ++ +G Sbjct: 352 LQQQINSQAMRYSRLMLG 369 >gi|254518915|ref|ZP_05130971.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. 7_2_43FAA] gi|226912664|gb|EEH97865.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. 7_2_43FAA] Length = 444 Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 184/447 (41%), Positives = 278/447 (62%), Gaps = 17/447 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +++++++GCQMN DS ++ M S GY + S+++A +I+ NTC +RE A KV+ LG Sbjct: 9 KYYIETWGCQMNEEDSEKLSGMLKSVGYTKTESIEEAGIIIYNTCCVRENAENKVFGNLG 68 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143 +++LK K+ DL++ V GC+ Q EG ++IL++ P VN++ G Y+ PE L R Sbjct: 69 ELKHLK----KKNPDLIIAVCGCMMQQEGMADKILKKFPHVNIIFGTHNAYKFPEYLNRV 124 Query: 144 RFGKRVVDTDYSVEDKFERLS-IVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + V++ F + S IV+G +R+ V AF+TI GC+ FCT+CVVPY RG Sbjct: 125 K------TEGVQVKEIFNKESEIVEGLPIDRESDVKAFVTIMYGCNNFCTYCVVPYVRGR 178 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++E + L+ G EITLLGQNVN++ GKGL+ E F+ LL ++E+ GL Sbjct: 179 ERSRKSEDIINEIKDLVSKGYKEITLLGQNVNSY-GKGLE-EDIDFAKLLRKINEVDGLE 236 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D++ +I A + D L +HLPVQSGSDRILK MNR +T Y +++D Sbjct: 237 RVRFMTSHPKDLNKDVILAIKECDKLCEQIHLPVQSGSDRILKKMNRHYTKEYYLELVDM 296 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ PD+++++D IVGFPGET++DF T+DLV+++GY AF+F YS R TP ML Q Sbjct: 297 IKREIPDVSLTTDIIVGFPGETEEDFLDTLDLVERVGYDSAFTFIYSRRNNTPADMMLNQ 356 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440 V + K R L K + E + N G+ +EVL+E K KL GR+ + V Sbjct: 357 VPDADKHHRFDRLIKVVNEGVIKSNKVYEGKTVEVLVEGPSKNDATKLTGRTRNGKLVNF 416 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467 + +N GD++ V+I + +L GE+ Sbjct: 417 SGENVKAGDLVNVKIVRAQPFSLVGEV 443 >gi|302871702|ref|YP_003840338.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor obsidiansis OB47] gi|302574561|gb|ADL42352.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor obsidiansis OB47] Length = 471 Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 176/447 (39%), Positives = 279/447 (62%), Gaps = 14/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + +YGCQMNV+DS ++ M + GY ++ +ADLI+ NTC +RE A +VY + Sbjct: 36 KKYHIVTYGCQMNVHDSEKLAGMLNAMGYVETENIQEADLIIFNTCSVREHAESRVYGNI 95 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK+ + DL++ V GC+ Q +++ + P ++++ G ++ ++ P+LL Sbjct: 96 GPLKRLKDKK----PDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K+ V ED +V+G R++GV+AF+ I GC+ FCT+C+VPY RG Sbjct: 152 AITEKKTVIDISEDED-----VVVEGIPTARRQGVSAFVNIIYGCNNFCTYCIVPYVRGR 206 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++ E +L+ NGV E+TLLGQNVN++ GK L TF LL ++EIKG+ Sbjct: 207 ERSRRPEEIIYEIEQLVQNGVKEVTLLGQNVNSY-GKDL-ANGITFPKLLEKVNEIKGIE 264 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D+SD LI A DLD + ++HLPVQSGS RILK+MNR +T +Y +++++ Sbjct: 265 RIRFVTSHPKDLSDELIVAMRDLDKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +++ PDIAI++D IVGFPGETD+DF T+D+ K+ + A++F YS R GTP M Q Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCQKVEFDSAYTFIYSKRRGTPAEKMPNQ 384 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V E++K +R L K + E + N +G+ E+LI+ K LVGR+ + V + Sbjct: 385 VPEDIKHQRFQRLVKLVEEIALKKNKQMLGKTYEILIDSRSKRNNLLVGRTRTNKVVNVK 444 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + + + V+I + LYGE++ Sbjct: 445 CPDEYMFKFVNVKILEAAEHWLYGEVI 471 >gi|28210988|ref|NP_781932.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium tetani E88] gi|75542486|sp|Q895H1|MIAB_CLOTE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|28203427|gb|AAO35869.1| miaB protein [Clostridium tetani E88] Length = 453 Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 185/447 (41%), Positives = 283/447 (63%), Gaps = 17/447 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF++++GCQMN DS ++ M + GY+ + AD+I+ NTC +RE A KVY LG Sbjct: 19 FFIETWGCQMNEEDSEKLSGMLKNIGYKNAEDKNQADIIIFNTCCVRENAELKVYGNLGA 78 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ LK+ + +L++ V GC+ Q EG E I+++ P V+++ G Y+ PE L RA+ Sbjct: 79 LKGLKS----KNPNLIIAVCGCMMQQEGMAEAIIKKYPFVDIIFGTHNSYKFPEYLNRAK 134 Query: 145 -FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 GK +++ V DK E IV+G +RK AF+TI GC+ FCT+C+VPY RG E Sbjct: 135 QEGKSIIE----VWDKEEE--IVEGIPVDRKSSTKAFVTIMYGCNNFCTYCIVPYVRGRE 188 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR +S + E ++L+ +G EITLLGQNVN++ GK L+ K +F++LL ++EI+G+ R Sbjct: 189 RSREVSDIEKEIKELVKSGYKEITLLGQNVNSY-GKDLEP-KVSFAELLRHVNEIEGIER 246 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHP+D+++ +I A + D L ++HLPVQSGS RILK MNR + +Y ++++I Sbjct: 247 VRFMTSHPKDLTEDVIYAIKECDKLCNHIHLPVQSGSSRILKKMNRYYNREDYLNLVNKI 306 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + P++AI++D IVGFPGET++DF T++LV ++ Y AF+F YS R GTP ++ EQV Sbjct: 307 KEEIPNVAITTDIIVGFPGETEEDFNETLELVKEVEYDSAFTFLYSKRKGTPAYDIEEQV 366 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441 E+VK +R L + + + N +I++VL+E K +K KL GR+ + V Sbjct: 367 PEDVKHDRFKKLVEVVNKSCEKNNKKYQDRIVKVLVEGESKNDKNKLSGRTDTAKLVNFI 426 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 NIG I+ V+IT +L GE V Sbjct: 427 GNKDNIGKIVDVKITKTLSFSLEGEEV 453 >gi|253681530|ref|ZP_04862327.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum D str. 1873] gi|253561242|gb|EES90694.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum D str. 1873] Length = 447 Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 177/448 (39%), Positives = 281/448 (62%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +RFF+ ++GCQMN DS ++ + GY R + DDAD+++ NTC +RE A +KVY L Sbjct: 11 KRFFISTWGCQMNEEDSEKISGLLKGIGYTRTDIRDDADVVIFNTCCVRENAEQKVYGHL 70 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK ++ DL+++V GC+ Q +G E+++ + P V+V+ G Y+LPE +ER Sbjct: 71 GELKALK----RKNPDLILIVTGCMMQQKGMPEKVMEKFPHVDVIAGTYNSYKLPEYIER 126 Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + GK +++ +D E L + +RK + AF+TI GC+ FC++C+VPY RG Sbjct: 127 VKTEGKSIIEIWDKEKDIVEGLPV-----DRKSDIKAFVTIMYGCNNFCSYCIVPYVRGR 181 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +VDE + L+ G EITLLGQNVN++ GKGL E F+DLL +++I+GL Sbjct: 182 ERSRDPQNIVDEIKDLVSKGYKEITLLGQNVNSY-GKGLIPE-INFADLLRMVNKIEGLE 239 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D+SD LIKA + + + H +QSGS +IL+ MNR++T +Y ++ + Sbjct: 240 RIRFMTSHPKDVSDELIKAMAECEKVCEQGHFALQSGSTKILEKMNRKYTREDYLNLVKK 299 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P+I IS+D IVG+PGET++DF T+ +V +I + AF+F YS R GTP + +Q Sbjct: 300 LRVAMPNIGISTDIIVGYPGETEEDFEETLSIVKEIEFDSAFTFIYSKREGTPAAKHEDQ 359 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 V ++VK R L + + E N G+++EVL+E K + KL+GR+ + V Sbjct: 360 VPDDVKHARFNRLVEAINEIMARKNKKFDGEVVEVLVEGPSKNDDTKLMGRTRTGKLVNF 419 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + +N+G ++ ++IT +L GE++ Sbjct: 420 DGDINNVGKLVNIKITKANSFSLTGEII 447 >gi|163781959|ref|ZP_02176959.1| oxaloacetate decarboxylase [Hydrogenivirga sp. 128-5-R1-1] gi|159883179|gb|EDP76683.1| oxaloacetate decarboxylase [Hydrogenivirga sp. 128-5-R1-1] Length = 441 Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 185/449 (41%), Positives = 280/449 (62%), Gaps = 19/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++F+K++GCQMN DS R+ + + GYE S ++ADLI+LNTC IREK +KV S + Sbjct: 3 KKYFIKTFGCQMNFNDSERIRGILRTLGYEPAESWEEADLILLNTCTIREKPDQKVLSHI 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G + +K + + L+ V+GC+AQ G E+++++P V+++ ++LPEL+ +A+ Sbjct: 63 GEYKKIK----ERNPNALIAVSGCLAQRAGWELVQKAPAVDIMFSSFNMHQLPELINQAQ 118 Query: 145 FG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G K V + ED+ ++ D R A++TI +GCDK CT+CVVP TRG E Sbjct: 119 AGYKAVAILEAPPEDED---AVWDFPTERDNPYCAYVTIIKGCDKNCTYCVVPKTRGKER 175 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVR 262 SRS+ +++E +KL+D GV EI LLGQNV AW G D E+ FS+LLY +S++ G+ R Sbjct: 176 SRSMYSILEEVKKLVDEGVREIHLLGQNVTAW---GKDFERPIPFSELLYEVSKVDGVER 232 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TT HP+D++D ++A D+ + LHLP Q+GSDRIL+ M+R++T Y I+R+ Sbjct: 233 IRFTTGHPKDLTDDTVEAMADIPQVCNALHLPFQAGSDRILELMDRKYTKEFYLDRINRL 292 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + DIA+S+D IVGFP ETD+DF T+D+V ++ + Q FSFKYSPR GTP + M QV Sbjct: 293 KEAVEDIALSTDIIVGFPTETDEDFEHTLDVVREVEFEQVFSFKYSPRPGTPAAEMEGQV 352 Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 + VK E RLL LQK + + + G + +VL+E+ E G L+GR+ + Sbjct: 353 PDEVKTERMSRLLELQKAIMGK---LSKRYEGTVQKVLVEEERGE-GTLIGRTTTNKWAT 408 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 +G I+KVR+ L EL+ Sbjct: 409 FKGGRELLGKIVKVRVESASPFNLECELL 437 >gi|320353884|ref|YP_004195223.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfobulbus propionicus DSM 2032] gi|320122386|gb|ADW17932.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfobulbus propionicus DSM 2032] Length = 450 Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 179/452 (39%), Positives = 271/452 (59%), Gaps = 15/452 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++K++GCQMN DS ME M +GY S + AD++++NTC IREKA +KV+S L Sbjct: 3 KNLYIKTFGCQMNERDSEIMEQMLAQEGYVPAASPEGADVVLINTCSIREKAEQKVFSLL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G++R K LL+ V GCVAQ EGE I R P V+++VG Q Y+LPE+L R Sbjct: 63 GQLREEK----ARNPSLLLGVTGCVAQQEGERIRERMPHVDLIVGTQQIYQLPEMLARLT 118 Query: 145 FGKRVVDTDYSVE-----DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G +T +E F++L I F+TI +GC+ +C++CVVP TR Sbjct: 119 QGMTTRETATDLEGSFAIPPFQKLLINTPPSPAPHSFRRFVTIMQGCNNYCSYCVVPGTR 178 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIK 258 G EISR ++ +++E L+ GV EITLLGQNVN++ + + + F LL ++ + Sbjct: 179 GREISRPVADIMEEVEILVSQGVKEITLLGQNVNSYGKTNKVADTEVDFPQLLRQVALVN 238 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL RLR+TTSHP+D+S+ L++ ++D+L P+ HLPVQSGS+ +L+ MNR++T Y + Sbjct: 239 GLRRLRFTTSHPKDLSEALMRCFAEIDILCPHFHLPVQSGSNAVLQRMNRKYTVENYLEK 298 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + +R + PDIA+++D IVGFPGET+ DF+ATMDL+ + + +FSFKYS R T + Sbjct: 299 VASLRRLCPDIALATDIIVGFPGETEADFQATMDLLQTVRFHGSFSFKYSDRPHTRSAEF 358 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 +++ E VKA RL+ Q + N +G+ +EV++E E +L GR+P Q V Sbjct: 359 SDKIPEEVKARRLMEFQSLQDSISLERNSESIGREVEVMVE--SGEGNRLRGRTPANQIV 416 Query: 439 VLNSKNHN---IGDIIKVRITDVKISTLYGEL 467 + + G + +V+I +L G L Sbjct: 417 HFTAAPASSLIPGTLARVQIDHAGKHSLKGTL 448 >gi|331269503|ref|YP_004395995.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum BKT015925] gi|329126053|gb|AEB75998.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum BKT015925] Length = 452 Score = 333 bits (853), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 174/448 (38%), Positives = 282/448 (62%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +RFF+ ++GCQMN DS ++ + GY R + DDAD+++ NTC +RE A +KVY L Sbjct: 16 KRFFISTWGCQMNEEDSEKISGLLKGIGYTRTDIRDDADVVIFNTCCVRENAEQKVYGHL 75 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK ++ DL+++V GC+ Q +G E+++ + P V+++ G Y+LPE +ER Sbjct: 76 GELKALK----RKNPDLILIVTGCMMQQKGMPEKVMEKFPHVDIIAGTYNSYKLPEYIER 131 Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + GK +++ +D E L + +RK + AF+TI GC+ FC++C+VPY RG Sbjct: 132 VKTEGKSIIEIWDKEKDIVEGLPV-----DRKSDIKAFVTIMYGCNNFCSYCIVPYVRGR 186 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++DE + L+ G EITLLGQNVN++ GKGL E F+DLL +++I+GL Sbjct: 187 ERSRDPQNIIDEIKDLVSKGYKEITLLGQNVNSY-GKGLTPE-MNFADLLRMVNKIEGLE 244 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D+SD LIKA + + + H +QSGS +IL+ MNR++T +Y ++ + Sbjct: 245 RIRFMTSHPKDVSDELIKAMAECEKVCEQGHFALQSGSTKILEKMNRKYTREDYLNLVKK 304 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ P++ IS+D IVG+PGET++DF+ T+ +V +I + AF+F YS R GTP + +Q Sbjct: 305 LRAAMPNVGISTDIIVGYPGETEEDFQETLSIVKEIEFDSAFTFIYSKREGTPAAKHEDQ 364 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 V ++VK R L + + E N G+++EVL+E K + KL+GR+ + V Sbjct: 365 VPDDVKHVRFNRLVEAINEIMSRKNKKFDGEVVEVLVEGPSKNDDTKLMGRTRTGKLVNF 424 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + N+G ++ ++IT +L GE++ Sbjct: 425 DGDISNVGKLVNIKITKANSFSLTGEII 452 >gi|85859266|ref|YP_461468.1| tRNA 2-methylthioadenosine synthase [Syntrophus aciditrophicus SB] gi|123725257|sp|Q2LT94|MIAB_SYNAS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|85722357|gb|ABC77300.1| tRNA 2-methylthioadenosine synthase [Syntrophus aciditrophicus SB] Length = 461 Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 181/446 (40%), Positives = 282/446 (63%), Gaps = 12/446 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++++ GCQMNV+DS ++ + +GY ++ADLI+LNTC IREKAA+K S L Sbjct: 18 KHIYIQTLGCQMNVHDSEQIAALMEEKGYICTEDANEADLIILNTCSIREKAAQKAKSQL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143 GR RNLK + +LL+ V GC+AQ G+E+L + P ++ + G ++LP+ + R Sbjct: 78 GRYRNLKRKK----RNLLIGVGGCLAQQLGDELLTKVPDIDFIFGTHNIHQLPDFISRIE 133 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + K++V+T ++ + ++ N + V++F+TI +GC+ FC++C+VPY RG E Sbjct: 134 KSRKKIVET--TLHPSTPSIGVLALPCNGQ--VSSFVTIMQGCNNFCSYCIVPYVRGREE 189 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E R L D+GV E+TLLGQNVN++ + GE F++LL + +IKG+ R+ Sbjct: 190 SRPPEDIIHEIRMLADHGVKEVTLLGQNVNSY-ARKTSGE-MGFAELLREIEKIKGIERM 247 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP+D+S+ LI A DL L ++HLP QSGSDRIL MNR +T +Y ++R+R Sbjct: 248 RFTTSHPKDLSEFLITAFSDLSKLCHHIHLPFQSGSDRILALMNRGYTKSDYLAKVERLR 307 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +V PDI+I++D IVGFPGE+D+DF+ T+D++++I + FSFKYS R GT M +V Sbjct: 308 TVCPDISITADVIVGFPGESDEDFKETIDMMNQIRFDNLFSFKYSEREGTAAVKMDGKVS 367 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442 E +K ERL LQ + + N A G+ +VL+E K + L GR+ + V + Sbjct: 368 EPLKLERLQILQALQEQHTLEKNKAMEGKQEDVLVEGFSKNCRKDLTGRTSTNKIVNFSG 427 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IGD++ V I + + +L GE++ Sbjct: 428 CVDLIGDMVSVLIKEAYLHSLRGEML 453 >gi|289578350|ref|YP_003476977.1| RNA modification enzyme, MiaB family [Thermoanaerobacter italicus Ab9] gi|289528063|gb|ADD02415.1| RNA modification enzyme, MiaB family [Thermoanaerobacter italicus Ab9] Length = 471 Score = 332 bits (850), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 186/449 (41%), Positives = 282/449 (62%), Gaps = 21/449 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + +++YGCQMNV+DS ++ M GY+ +++ AD+++ NTC +RE A +V LGR Sbjct: 33 YHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVREHAEIRV---LGR 89 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K + + +L++ V+GC+ Q + E I + +++V G Y+ P+LL A Sbjct: 90 VSQMKELKAR-NPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKFPQLLWEAL 148 Query: 145 FGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + +V D ++ E L + R + A++ I GC+ FCT+C+VPYTRG E Sbjct: 149 NSQDIVIDVIEDTKNVIEELPV-----KRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +V E ++L G EITLLGQNVN++ GK LD E TF+ LLY L+EI+G+ R+ Sbjct: 204 SRKPEDIVAEVKELAQKGYKEITLLGQNVNSY-GKDLD-EDITFAKLLYKLNEIEGIERI 261 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD LI A DL+ + +LHLPVQ+GS++ILK MNR++T Y +IID++R Sbjct: 262 RFMTSHPKDISDELIYAMRDLNKVCEHLHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVR 321 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S PDIAI++D IVGFPGET++DF T+DLV+++ + A++F YS R GT +NM +QVD Sbjct: 322 SNIPDIAITTDIIVGFPGETEEDFLETLDLVERVRFDAAYTFIYSKRAGTVAANMPDQVD 381 Query: 384 ENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 + VK ERL+ LQ K+ ++ + G+I+EVLIE K + KL R+ + V Sbjct: 382 DAVKHERLERLIELQNKISLEKSA---ELRGKIVEVLIEGISKRDSNKLTSRTRTNKVVH 438 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + ++IT+ K T+ GELV Sbjct: 439 FVGDESLIGKLANIKITETKAWTMQGELV 467 >gi|307267463|ref|ZP_07548950.1| RNA modification enzyme, MiaB family [Thermoanaerobacter wiegelii Rt8.B1] gi|306917520|gb|EFN47807.1| RNA modification enzyme, MiaB family [Thermoanaerobacter wiegelii Rt8.B1] Length = 471 Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 185/449 (41%), Positives = 283/449 (63%), Gaps = 21/449 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + +++YGCQMNV+DS ++ M GY+ +++ AD+++ NTC +RE A +V LGR Sbjct: 33 YHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVREHAEIRV---LGR 89 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K + + +L++ V+GC+ Q + E I + +++V G Y+ P+LL A Sbjct: 90 VSQMKELKAR-NPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKFPQLLWEAL 148 Query: 145 FGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + +V D ++ E L + R + A++ I GC+ FCT+C+VPYTRG E Sbjct: 149 NSQDIVIDIIEDTKNVIEELPV-----KRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E ++L G EITLLGQNVN++ GK LD E TF+ LLY L++I+G+ R+ Sbjct: 204 SRKPEDIIAEVKELAQKGYKEITLLGQNVNSY-GKDLD-EDITFAKLLYKLNDIEGIERI 261 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD LI A DLD + +LHLPVQ+GS++ILK MNR++T Y +IID++R Sbjct: 262 RFMTSHPKDISDELIYAIRDLDKVCEHLHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVR 321 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S PDIAI++D IVGFPGET++DF T+DLV+++ + A++F YS R GT +NM +QVD Sbjct: 322 SNIPDIAITTDIIVGFPGETEEDFLETLDLVERVRFDAAYTFIYSKRAGTVAANMPDQVD 381 Query: 384 ENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 + +K ERL+ LQ K+ ++ + G+I+EVLIE K + KL R+ + V Sbjct: 382 DAIKHERLERLIELQNKISLEKSA---ELRGKIVEVLIEGISKRDSNKLTSRTRTNKVVH 438 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ V+IT+ K T+ GELV Sbjct: 439 FVGDESLIGKLVNVKITETKAWTMQGELV 467 >gi|297544628|ref|YP_003676930.1| MiaB family RNA modification protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842403|gb|ADH60919.1| RNA modification enzyme, MiaB family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 471 Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 186/449 (41%), Positives = 281/449 (62%), Gaps = 21/449 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + +++YGCQMNV+DS ++ M GY+ +++ AD+++ NTC +RE A +V LGR Sbjct: 33 YHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVREHAEIRV---LGR 89 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K + + +L++ V+GC+ Q + E I + +++V G Y+ P+LL A Sbjct: 90 VSQMKELKAR-NPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKFPQLLWEAL 148 Query: 145 FGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + +V D ++ E L + R + A++ I GC+ FCT+C+VPYTRG E Sbjct: 149 NSQDIVIDVIEDTKNVIEELPV-----KRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +V E ++L G EITLLGQNVN++ GK LD E TF+ LLY L+EI+G+ R+ Sbjct: 204 SRKPEDIVAEVKELAQKGYKEITLLGQNVNSY-GKDLD-ENITFAKLLYKLNEIEGIERI 261 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD LI A DL+ + +LHLPVQ+GS++ILK MNR++T Y +IID++R Sbjct: 262 RFMTSHPKDISDELIYAMRDLNKVCEHLHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVR 321 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S PDIAI++D IVGFPGET++DF T+DLV ++ + A++F YS R GT +NM +QVD Sbjct: 322 SNIPDIAITTDIIVGFPGETEEDFLETLDLVQRVRFDAAYTFIYSKRAGTVAANMPDQVD 381 Query: 384 ENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 + VK ERL+ LQ K+ ++ + G+I+EVLIE K + KL R+ + V Sbjct: 382 DAVKHERLERLIELQNKISLEKSA---ELRGKIVEVLIEGISKRDSNKLTSRTRTNKVVH 438 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + ++IT+ K T+ GELV Sbjct: 439 FVGDESLIGKLANIKITETKAWTMQGELV 467 >gi|167040247|ref|YP_001663232.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermoanaerobacter sp. X514] gi|256750831|ref|ZP_05491716.1| RNA modification enzyme, MiaB family [Thermoanaerobacter ethanolicus CCSD1] gi|300914331|ref|ZP_07131647.1| RNA modification enzyme, MiaB family [Thermoanaerobacter sp. X561] gi|307724433|ref|YP_003904184.1| RNA modification enzyme, MiaB family [Thermoanaerobacter sp. X513] gi|229891016|sp|B0K1A1|MIAB_THEPX RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|166854487|gb|ABY92896.1| RNA modification enzyme, MiaB family [Thermoanaerobacter sp. X514] gi|256750414|gb|EEU63433.1| RNA modification enzyme, MiaB family [Thermoanaerobacter ethanolicus CCSD1] gi|300889266|gb|EFK84412.1| RNA modification enzyme, MiaB family [Thermoanaerobacter sp. X561] gi|307581494|gb|ADN54893.1| RNA modification enzyme, MiaB family [Thermoanaerobacter sp. X513] Length = 471 Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 186/449 (41%), Positives = 282/449 (62%), Gaps = 21/449 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + +++YGCQMNV+DS ++ M GY+ +++ AD+++ NTC +RE A +V LGR Sbjct: 33 YHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVREHAEIRV---LGR 89 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K + + +L++ V+GC+ Q + E I + +++V G Y+ P+LL A Sbjct: 90 VSQMKELKAR-NPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKFPQLLWEAL 148 Query: 145 FGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + +V D ++ E L + R + A++ I GC+ FCT+C+VPYTRG E Sbjct: 149 NSQDIVIDIIEDTKNVIEELPV-----KRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E ++L G EITLLGQNVN++ GK LD E TF+ LLY L++I+G+ R+ Sbjct: 204 SRKPEDIIAEVKELAQKGYKEITLLGQNVNSY-GKDLD-EDITFAKLLYKLNDIEGIERI 261 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD LI A DLD + +LHLPVQ+GS++ILK MNR++T Y +IID++R Sbjct: 262 RFMTSHPKDISDELIYAMRDLDKVCEHLHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVR 321 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S PDIAI++D IVGFPGET++DF T+DLV+++ + A++F YS R GT +NM +QVD Sbjct: 322 SNIPDIAITTDIIVGFPGETEEDFLETLDLVERVRFDAAYTFIYSKRAGTVAANMPDQVD 381 Query: 384 ENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 + VK ERL+ LQ K+ ++ + G+I+EVLIE K + KL R+ + V Sbjct: 382 DAVKHERLERLIELQNKISLEKSA---ELRGKIVEVLIEGISKRDSNKLTSRTRTNKVVH 438 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+IT+ K T+ GELV Sbjct: 439 FVGDESLIGKLANVKITETKAWTMQGELV 467 >gi|116625754|ref|YP_827910.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Solibacter usitatus Ellin6076] gi|122252074|sp|Q01RU5|MIAB_SOLUE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|116228916|gb|ABJ87625.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Solibacter usitatus Ellin6076] Length = 445 Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 182/449 (40%), Positives = 274/449 (61%), Gaps = 26/449 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F+++++GCQMN +DS ++ ++GYE+V + + A+L+ NTC IR+KA +KV++ R Sbjct: 9 FYIETFGCQMNAHDSEKVVGTLLAEGYEQVATPEAAELVFYNTCSIRDKAEQKVFN---R 65 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 ++N K +K G + V+ GCVAQ EGE+I R+P V++V G +Y RLPE+L + G Sbjct: 66 LQNFKREGMK--GKIFGVL-GCVAQQEGEKIFDRAPHVSLVAGSASYTRLPEMLVQLEAG 122 Query: 147 KRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R V DT+ + + F R R A+LTI EGCDK C +CVVP+TRG Sbjct: 123 NRRVTGLSLDTEETFDTPFTR---------RDNPHRAYLTIIEGCDKACAYCVVPFTRGP 173 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR+ V+ EAR L + G E+ LLGQNVN++R G F+ LL ++EI G+ Sbjct: 174 ERSRTSESVMAEARGLTEKGYTEVQLLGQNVNSYRDPSPAG--WDFATLLAKVAEIPGMR 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RYTTSHPRD ++ A + + ++HLPVQSGS ++L +M+R +T EY + ID Sbjct: 232 RVRYTTSHPRDFVRPIVDAMDANEAICDHIHLPVQSGSSKVLAAMDRLYTRDEYLRRIDW 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+S + ++++D I+GFPGETD DF T+DL+D++ Y FSFKYSPR T M ++ Sbjct: 292 IKSAKRRYSLTTDIIIGFPGETDADFEQTLDLLDEVQYDSLFSFKYSPRPNTSALAMEDR 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + E K RLL LQ+K R Q+ N +G I EVL+E + G+ +GR+ +++ + Sbjct: 352 IPEEEKQRRLLTLQEKQRAIQIRRNAEMIGSIQEVLVEGRNQALGQWIGRTTCNRTLNFS 411 Query: 442 SKNHN----IGDIIKVRITDVKISTLYGE 466 + N +G + VR+T ++L GE Sbjct: 412 HPDTNGNELVGKYLPVRVTRSGPNSLVGE 440 >gi|311086171|gb|ADP66253.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087332|gb|ADP67412.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 427 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 178/435 (40%), Positives = 266/435 (61%), Gaps = 12/435 (2%) Query: 36 MNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS + + Y S ++AD+++LNTC IREKA EKV+ LGR + +KN+ Sbjct: 1 MNEYDSSMIITLLEKNNQYSLTKSAENADILILNTCSIREKAQEKVFHQLGRWKKIKNNN 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTD 153 K +++ V GCVA EG+EI +R+ V+++ G QT +RLP++++ +++ +D Sbjct: 61 PK----VIIAVGGCVATQEGKEIFKRANYVDIIFGTQTLHRLPKMIDEVEKKRKLSIDIS 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +KF+ +K+G TA ++I EGC+K+C+FCVVPYTRG EISR V+ E Sbjct: 117 FPKLEKFKYFLAP-----KKKGYTADISIMEGCNKYCSFCVVPYTRGNEISRPCDDVLFE 171 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 L G+ EI LLGQNVNA++G +G+ C FS+L+ ++EI G+ R+R+TTS+P + Sbjct: 172 ISLLAKQGIKEINLLGQNVNAYQGPTFNGKVCYFSELIRLVAEIDGIERIRFTTSNPLEF 231 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D +I+ + D L+ +LHLPVQSGS++IL M R +T +Y II ++ RPDI ISS Sbjct: 232 TDDIIEVYKDTPKLVSFLHLPVQSGSNKILNLMKRSYTTEDYTSIIKKLTIARPDIQISS 291 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFIVGFPGE++ DF T++ + I + +FSF YS R GTP SNM + +D K RL Sbjct: 292 DFIVGFPGESEIDFEKTIEFIKNINFDMSFSFIYSARPGTPASNMNDNLDLKEKKRRLYI 351 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ+++ Q + ++ G I VL+E K L GR+ + V + IG + Sbjct: 352 LQERINIQTMLWSRKMFGSIQSVLVEGVSDKNIMDLYGRTENNRVVTFQGSSEMIGQFVN 411 Query: 453 VRITDVKISTLYGEL 467 V+I V +L GEL Sbjct: 412 VKIKKVHTHSLKGEL 426 >gi|308272044|emb|CBX28652.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [uncultured Desulfobacterium sp.] Length = 471 Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 170/368 (46%), Positives = 247/368 (67%), Gaps = 11/368 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++ ++GCQMNVYDS ++ GYE S+D+ADLI++NTC IREKA +K +SF Sbjct: 4 KSLYINTFGCQMNVYDSQQIISQLNPIGYEVSESLDEADLIIVNTCAIREKAQQKAFSFF 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE-LLERA 143 GR+ LK R K G L++ GCVAQ EG+ IL R +++V G RLPE ++ + Sbjct: 64 GRLAVLK--RKKPG--LIICAGGCVAQQEGKRILERFSYIDLVFGTHALKRLPEHIINIS 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + R+ D + + ++ E S+ N VT F+TI GCD +CT+CVVP+ RG EI Sbjct: 120 KKRCRISDVEMT-DEILEFPSVASQVTNNI--VTRFVTIMRGCDNYCTYCVVPHVRGPEI 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE RKL+D+GV E+TLLGQNVN++ G+ C+F +LL +SE +GL R+ Sbjct: 177 SRKPEHIIDEIRKLVDSGVQEVTLLGQNVNSY---GIKEGLCSFPELLRLVSETEGLFRI 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP+D+S L+ A DLD L ++HLPVQSGS+ ILK MNR++T Y + ID++R Sbjct: 234 RFTTSHPKDLSQELVFAFRDLDKLCNHIHLPVQSGSNNILKRMNRKYTRELYLEKIDKLR 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PDIAI+SD IVGFPGET+DDF+AT+DLV ++ + F+F+YS R+ P + +++ Sbjct: 294 KISPDIAITSDVIVGFPGETEDDFKATLDLVKEVEFDSLFTFEYSDRIKAPAAKFSDKIS 353 Query: 384 ENVKAERL 391 +++K RL Sbjct: 354 DDIKNGRL 361 >gi|310821577|ref|YP_003953935.1| tRNA-i(6)a37 thiotransferase enzyme miab [Stigmatella aurantiaca DW4/3-1] gi|309394649|gb|ADO72108.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Stigmatella aurantiaca DW4/3-1] Length = 467 Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 192/450 (42%), Positives = 276/450 (61%), Gaps = 25/450 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R+F+ ++GCQMNV DSLRM + Y + D+ADLI+LNTC IREKA +K+ S L Sbjct: 2 KRYFIHTFGCQMNVNDSLRMSEALAQIAYAPTPTPDNADLIILNTCAIREKAEDKMLSAL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143 GR R +K SR L+ V GCVAQ E + +L++ P V+ V GP +LPE++ R + Sbjct: 62 GRYRPVKVSR-----GALIGVGGCVAQQEKDRLLKKVPYVDFVFGPDNIGKLPEIITRVS 116 Query: 144 RFGKRVVDTDY--SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + +RVV+T + S E F R D +R + VT F+T+ +GCD C+FCVVP+TRG Sbjct: 117 QERERVVETAFVDSEEYVFPR---ADPETSRGK-VTEFVTVMKGCDNVCSFCVVPHTRGR 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR+ V+ E L G+ E+TL+GQNVN++RG +F+ LL +E+ G+ Sbjct: 173 EVSRAFPDVLTEVADLARVGLREVTLIGQNVNSYRGG------ISFAQLLLRTAEVPGIE 226 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP D+SD LI A + P+ HLPVQ GSDRILK M R +T +Y + +++ Sbjct: 227 RVRFTTSHPHDLSDELIDAFRTQPKIAPHFHLPVQCGSDRILKMMRRDYTVVQYLERLEK 286 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RP IA+++D IVGFPGET++DF TM L +++ Y FSF +SPR T G+ + E+ Sbjct: 287 LRAARPGIAVTTDIIVGFPGETEEDFEMTMQLTEQVRYESQFSFIFSPRPKT-GAALREK 345 Query: 382 ----VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQ 436 V VK RL LQK R+ + VG +EVL+E H K + GK GRSP + Sbjct: 346 DWGSVPHEVKIARLERLQKVQRKICGEIAVSQVGLEVEVLVEGHSKYDAGKRFGRSPENR 405 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 +V + + G I+KV + + L G+ Sbjct: 406 TVNFDG-DAPAGAIVKVLVDRATPNHLMGK 434 >gi|167037585|ref|YP_001665163.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116000|ref|YP_004186159.1| MiaB family RNA modification protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389400|ref|ZP_08210967.1| RNA modification enzyme, MiaB family [Thermoanaerobacter ethanolicus JW 200] gi|229891015|sp|B0K9L4|MIAB_THEP3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|166856419|gb|ABY94827.1| RNA modification enzyme, MiaB family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929091|gb|ADV79776.1| RNA modification enzyme, MiaB family [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325994405|gb|EGD52830.1| RNA modification enzyme, MiaB family [Thermoanaerobacter ethanolicus JW 200] Length = 471 Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 186/449 (41%), Positives = 282/449 (62%), Gaps = 21/449 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + +++YGCQMNV+DS ++ M GY+ +++ AD+++ NTC +RE A +V LGR Sbjct: 33 YHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVREHAEIRV---LGR 89 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K + + +L++ V+GC+ Q + E I + +++V G Y+ P+LL A Sbjct: 90 VSQMKELKAR-NPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKFPQLLWEAL 148 Query: 145 FGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + +V D ++ E L + R + A++ I GC+ FCT+C+VPYTRG E Sbjct: 149 NSQDIVIDIIEDTKNVIEELPV-----KRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREK 203 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E ++L G EITLLGQNVN++ GK LD E TF+ LLY L++I+G+ R+ Sbjct: 204 SRKPEDIIAEVKELAQKGYKEITLLGQNVNSY-GKDLD-EDITFAKLLYKLNDIEGIERI 261 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD LI A DLD + +LHLPVQ+GS++ILK MNR++T Y +IID++R Sbjct: 262 RFMTSHPKDISDELIYAIRDLDKVCEHLHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVR 321 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S PDIAI++D IVGFPGET++DF T+DLV+++ + A++F YS R GT +NM +QVD Sbjct: 322 SNIPDIAITTDIIVGFPGETEEDFLETLDLVERVRFDAAYTFIYSKRAGTVAANMPDQVD 381 Query: 384 ENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 + VK ERL+ LQ K+ ++ + G+I+EVLIE K + KL R+ + V Sbjct: 382 DAVKHERLERLIELQNKISLEKSA---ELRGKIVEVLIEGISKRDSNKLTSRTRTNKVVH 438 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+IT+ K T+ GELV Sbjct: 439 FVGDESLIGKLANVKITETKAWTMQGELV 467 >gi|158320587|ref|YP_001513094.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkaliphilus oremlandii OhILAs] gi|229890436|sp|A8MFD5|MIAB_ALKOO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|158140786|gb|ABW19098.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkaliphilus oremlandii OhILAs] Length = 471 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 180/449 (40%), Positives = 279/449 (62%), Gaps = 17/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + +YGCQMN +DS + M + GY + ++A+LI+ NTC +RE A KVY + Sbjct: 33 KKYMITTYGCQMNEHDSETLSGMLENMGYSITTNKEEANLIIYNTCCVRENAELKVYGNI 92 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK K+ DL++ V GC+ Q +EI R+ V++V G YR PELL R Sbjct: 93 GALKALK----KKNEDLIIAVCGCMMQQPQVVKEIKRKYRHVDLVFGTHNLYRFPELLSR 148 Query: 143 ARFGKRVVDTD-YSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + ++T+ +E E IV+G NRK + F+ I GC+ FCT+C+VPYTRG Sbjct: 149 S------METEGMFIEVWDEETGIVEGLPANRKYDLKGFINIMYGCNNFCTYCIVPYTRG 202 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR ++ ++ EA L +NG EITLLGQNVN++ GK L+ F+DLL +L++I G+ Sbjct: 203 RERSREVADIIREATDLANNGTKEITLLGQNVNSY-GKTLE-HPIDFADLLRALNKIDGI 260 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHP+D+S+ LI A + D + + HLP QSGS++ILK+MNR++T Y I+ Sbjct: 261 ERIRFMTSHPKDLSERLIDAIAECDKVCEHFHLPFQSGSNQILKAMNRKYTKENYLSIVK 320 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +++ P+I +++D IVGFPGET++DF+ T+D+V + Y A++F YS R GTP + M Sbjct: 321 KLKDRIPNIGLTTDIIVGFPGETEEDFQDTLDIVQEARYDSAYTFLYSIREGTPAAKMQN 380 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 Q+DE VK ER L K+ E N + + +++EVL+E K + KL+GR+ + V Sbjct: 381 QIDEKVKQERFSRLLDKVNEISAEINQSYLNKVVEVLVEGPSKTDSNKLMGRTRQNKLVN 440 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++ VRI + + +L GE++ Sbjct: 441 FSGDESLIGKLVNVRIVECRTFSLNGEVI 469 >gi|312135300|ref|YP_004002638.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor owensensis OL] gi|311775351|gb|ADQ04838.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor owensensis OL] Length = 471 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 173/447 (38%), Positives = 277/447 (61%), Gaps = 14/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + +YGCQMNV+DS ++ M + GY ++ +ADLI+ NTC +RE A +VY + Sbjct: 36 KKYHIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK+ + DL++ V GC+ Q +++ + P ++++ G ++ ++ P+LL Sbjct: 96 GPLKRLKDKK----PDLIIGVCGCMPQQLEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A KR V ED +V+G RK+GV+AF+ I GC+ FC++C+VPY RG Sbjct: 152 AITEKRTVIDVSENED-----VVVEGIPTARKQGVSAFVNIIYGCNNFCSYCIVPYVRGR 206 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++ E +L NGV E+TLLGQNVN++ ++G TF LL ++EIKG+ Sbjct: 207 ERSRRPEEIIYEIEQLAQNGVKEVTLLGQNVNSYGKDLVNG--ITFPKLLEKINEIKGIE 264 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D+S+ LI A DL+ + ++HLPVQSGS RILK+MNR +T +Y +++++ Sbjct: 265 RIRFVTSHPKDLSNELIAAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +++ PDIAI++D IVGFPGETD+DF T+D+ K+ + A++F YS R GTP M Q Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCKKVEFDSAYTFIYSKRRGTPAEKMPNQ 384 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V +N+K +R L K + E + N +G+ E+LI+ K LVGR+ + V + Sbjct: 385 VPDNIKHQRFQRLVKLVEEIALKKNKQMLGKTYEILIDGRSKRNNLLVGRTRTNKVVNVK 444 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + + V+I + LYGE++ Sbjct: 445 CPEEYMFKFVNVKILEAAEHWLYGEVI 471 >gi|322435958|ref|YP_004218170.1| RNA modification enzyme, MiaB family [Acidobacterium sp. MP5ACTX9] gi|321163685|gb|ADW69390.1| RNA modification enzyme, MiaB family [Acidobacterium sp. MP5ACTX9] Length = 440 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 180/445 (40%), Positives = 272/445 (61%), Gaps = 19/445 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F+++++GCQMN +DS ++ QGY +V +A LI+ NTC IR+KA +KV+ L Sbjct: 5 FYIETFGCQMNAHDSEKVVGTLEQQGYAQVQDEAEAGLILYNTCSIRDKAEQKVFHRLNE 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + ++ EG V+ GCVAQ EGE+I R+P V++V G +Y LP +LER G Sbjct: 65 YKKMQG----EGKRFAVI--GCVAQQEGEKIFDRAPYVSIVAGSASYRNLPGMLERLERG 118 Query: 147 KRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + D + FE + N+ RG ++TI EGCDKFC +CVVPYTRG E S Sbjct: 119 DQRITGLDDKKTTETFETPFVART--NQHRG---YITIIEGCDKFCAYCVVPYTRGNERS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS + V++EAR++ D+G EI LLGQNVN++R G K +F++LL+++ I G+ R+R Sbjct: 174 RSAASVMEEARRMADSGYTEIQLLGQNVNSYRDPS--GAK-SFAELLHAVGTIPGIRRVR 230 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHPRD + +++ L ++HLPVQSGS RIL +M R +T Y + I +++ Sbjct: 231 FTTSHPRDFTRDIVEVIDATPTLCDHVHLPVQSGSTRILAAMAREYTREWYLERIAWMKA 290 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + DI+++SD IVGFPGETD+D T L+D +GY F+FKYSPR TP +M + + + Sbjct: 291 AKRDISMTSDIIVGFPGETDEDLEDTATLLDAVGYDAIFAFKYSPRPNTPSVSMADSLSD 350 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VKA RL L + RE Q +GQ++EV++E H +++ ++VGR+ +++ + Sbjct: 351 EVKAARLQILLDRQREIQRINYQRHIGQVVEVMVEGHNRQRNQVVGRTSQNKTLNFTTAQ 410 Query: 445 ---HNIGDIIKVRITDVKISTLYGE 466 +G VRIT ++L GE Sbjct: 411 PIMPALGSYQMVRITQAFPNSLLGE 435 >gi|222529490|ref|YP_002573372.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Caldicellulosiruptor bescii DSM 6725] gi|222456337|gb|ACM60599.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor bescii DSM 6725] Length = 471 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 174/447 (38%), Positives = 277/447 (61%), Gaps = 14/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + +YGCQMNV+DS ++ M + GY ++ +ADLI+ NTC +RE A +VY + Sbjct: 36 KKYHIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DL+V V GC+ Q +++ + P ++++ G ++ ++ P+LL Sbjct: 96 GPLKRLKEKK----PDLIVGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K+ V ED +V+G R++GV+AF+ I GC+ FC++C+VPY RG Sbjct: 152 AITEKKTVIEVSEDED-----VVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGR 206 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++ E +L NG+ E+TLLGQNVN++ GK L G TF LL ++EIKG+ Sbjct: 207 ERSRRPEEIIYEIEQLAQNGIKEVTLLGQNVNSY-GKDL-GNSITFPKLLEKVNEIKGIE 264 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D+SD LI A DL+ + ++HLPVQSGS RILK+MNR +T +Y +++++ Sbjct: 265 RIRFVTSHPKDLSDELIVAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +++ PDIAI++D IVGFPGETD+DF T+D+ K+ + A++F YS R GTP M Q Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQ 384 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V +++K +R L K + E + N +G+ E+LI+ H K L GR+ + V + Sbjct: 385 VPDDIKYQRFQRLVKLVEEIALKKNRQMLGKTYEILIDSHSKRNNLLAGRTRTNKVVNVK 444 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + + V+I + LYGE++ Sbjct: 445 CSEEFMFKFVNVKIFEAAEHWLYGEVI 471 >gi|312127450|ref|YP_003992324.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor hydrothermalis 108] gi|311777469|gb|ADQ06955.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor hydrothermalis 108] Length = 471 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 177/447 (39%), Positives = 279/447 (62%), Gaps = 14/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + +YGCQMNV+DS ++ M + GY ++ +ADLI+ NTC +RE A +VY + Sbjct: 36 KKYHIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK+ + DL++ V GC+ Q +++ + P ++++ G ++ ++ P+LL Sbjct: 96 GPLKRLKDKK----PDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K+ V ED +V+G RK+GV+AF+ I GC+ FC++C+VPY RG Sbjct: 152 AIMEKKTVIDVSEDED-----VVVEGIPTARKQGVSAFVNIIYGCNNFCSYCIVPYVRGR 206 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++V E +L NGV E+TLLGQNVN++ GK L G+ TF LL ++EIKG+ Sbjct: 207 ERSRRPEEIVYEIEQLAQNGVKEVTLLGQNVNSY-GKDL-GDGITFPKLLEKVNEIKGIE 264 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D+SD LI A DL+ + ++HLPVQSGS RILK+MNR +T +Y ++I++ Sbjct: 265 RIRFVTSHPKDLSDELIVAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLIEK 324 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +++ PDIAI++D IVGFPGETD+DF T+D+ K+ + A++F YS R GTP M Q Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQ 384 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V +++K +R L K + + + N +G+ EVLI+ K LVGR+ + V + Sbjct: 385 VPDDIKRQRFQRLVKLVEDIALKKNRQMLGKTYEVLIDGQSKRNNLLVGRTRTNKVVNVK 444 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + + V+I + LYGE++ Sbjct: 445 CPEEYMFKFVNVKILEAAEHWLYGEVI 471 >gi|225174619|ref|ZP_03728617.1| RNA modification enzyme, MiaB family [Dethiobacter alkaliphilus AHT 1] gi|225169746|gb|EEG78542.1| RNA modification enzyme, MiaB family [Dethiobacter alkaliphilus AHT 1] Length = 457 Score = 329 bits (844), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 177/438 (40%), Positives = 266/438 (60%), Gaps = 15/438 (3%) Query: 32 YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 +GCQMN D+ + GYE V+ ++ ADL+++NTC +R+KA EKV+ +GR+ LK Sbjct: 14 FGCQMNERDAETLRGFLDEIGYEEVDEVEGADLVIMNTCAVRQKAEEKVFGRIGRLGVLK 73 Query: 92 NSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR- 148 KE ++++ V GC+ Q E ++I + P V+++ G PELL+RA K Sbjct: 74 ----KENPEMMIAVCGCMVQQEDVAKKIKKSYPFVDLIFGTHNIAAFPELLQRAAESKET 129 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V+D D E L + RK GV A++ I GC+ FC++C+VPY RG E SR Sbjct: 130 VLDLWDEAGDVVEGLPVT-----RKDGVKAWVNITYGCNNFCSYCIVPYVRGRERSRKPE 184 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++++E + L G E+TLLGQNVN++ GK L+ E+ F+DLL + + R+R+ TS Sbjct: 185 EIINEIKALAKQGFKEVTLLGQNVNSY-GKDLE-EEMDFADLLVRVDRETDINRIRFMTS 242 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 HPRD ++ L K G+ D + ++HLP+Q+GS+RILK MNR +T Y ++D +R PD Sbjct: 243 HPRDFTEKLAKVMGECDSVCEHVHLPIQAGSNRILKLMNRGYTKEHYLDLVDILRKYAPD 302 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 A+S+D IVGFPGET++DF T+D+VD++GY AF+F YSPR GTP ++M QV VK Sbjct: 303 CALSTDIIVGFPGETEEDFLDTLDVVDRVGYDMAFTFLYSPRSGTPAADMPHQVANEVKK 362 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNI 447 ER L + + + N VG+ +EVL+E K + G + GR+ ++V +N N Sbjct: 363 ERFQRLLEVQNKHSLRHNQEAVGKTVEVLVEGPSKTDPGVMTGRTRSSKTVNFTGENVNA 422 Query: 448 GDIIKVRITDVKISTLYG 465 GD++ V IT + +L G Sbjct: 423 GDLVMVEITQARTWSLLG 440 >gi|312793678|ref|YP_004026601.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180818|gb|ADQ40988.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor kristjanssonii 177R1B] Length = 471 Score = 329 bits (844), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 174/447 (38%), Positives = 279/447 (62%), Gaps = 14/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + +YGCQMNV+DS ++ M + GY ++ +ADLI+ NTC +RE A +VY + Sbjct: 36 KKYHIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK+ + DL++ V GC+ Q +++ + P ++++ G ++ ++ P+LL Sbjct: 96 GPLKRLKDKK----PDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K+ V ED +V+G R++GV+AF+ I GC+ FC++C+VPY RG Sbjct: 152 AITEKKTVIDVSEDED-----VVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGR 206 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++ E +L NGV E+TLLGQNVN++ GK L G TF LL ++EI+G+ Sbjct: 207 ERSRRPEEIIYEIEQLAQNGVKEVTLLGQNVNSY-GKDL-GNGITFPKLLEKVNEIEGIE 264 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D+SD LI A DL+ + ++HLPVQSGS RILK+MNR +T +Y +++++ Sbjct: 265 RIRFVTSHPKDLSDELIVAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +++ PDIAI++D IVGFPGETD+DF T+D+ K+ + A++F YS R GTP M Q Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQ 384 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V +++K +R L K + E + N +G+ E+LI+ H K LVGR+ + V + Sbjct: 385 VPDDIKHQRFQRLVKLVEEIALKKNRQMLGKTYEILIDGHSKRNNLLVGRTRTNKVVNVK 444 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + + V+I + LYGE++ Sbjct: 445 CPEEYMFKFVNVKILEAAEHWLYGEVI 471 >gi|153004383|ref|YP_001378708.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anaeromyxobacter sp. Fw109-5] gi|229890439|sp|A7HAH8|MIAB_ANADF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|152027956|gb|ABS25724.1| RNA modification enzyme, MiaB family [Anaeromyxobacter sp. Fw109-5] Length = 460 Score = 329 bits (843), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 182/451 (40%), Positives = 269/451 (59%), Gaps = 26/451 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +V ++GCQMN DS RM ++ + R + DDADLI+LNTC +REKA +K+ S L Sbjct: 23 RKVYVHTFGCQMNASDSDRMIELLGRHAFARAETPDDADLILLNTCAVREKAEQKLLSAL 82 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR R +K R L+ V+GCVAQ E + +L R P V+ V GP +LPE++ RA Sbjct: 83 GRYREVKARR-----GALIAVSGCVAQQEKDRLLARVPYVDFVFGPDNIGKLPEMVARAE 137 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +R +T + ++ + D R R TAF+T +GCD C FC+VP+TRG E+S Sbjct: 138 -RERFAETGW-MDSQDYVFPQADPEAARGR-PTAFVTAMKGCDNVCAFCIVPHTRGREVS 194 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+ ++V E L + GV E+TL+GQNVN++ G CTF++LL ++ + G+ R+R Sbjct: 195 RAFPEIVAECASLAEVGVREVTLIGQNVNSYAGG------CTFAELLRRVAAVPGIARIR 248 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP D+SD L+ D +MP+ HLPVQSGSD +L M R +T EY DR+R+ Sbjct: 249 FTTSHPHDLSDALVAVFRDEPKVMPHFHLPVQSGSDAVLARMRRDYTVAEYLDRFDRLRA 308 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP--------RLGTPGS 376 RP IAI++DFIVGFPGE + DF ++ L+++ + Q+FSF +SP RLGT + Sbjct: 309 ARPGIAITTDFIVGFPGEGEADFEGSLALLERARFEQSFSFLFSPRPKTVANLRLGT--A 366 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 +++ V ERL LQ R + A +G+++EVL+E E G+ +GR+P + Sbjct: 367 PEWQEIPRAVAVERLERLQAAQRRIAAAALAAELGKVVEVLVEGASDEPGERLGRTPENR 426 Query: 437 SVVL--NSKNHNIGDIIKVRITDVKISTLYG 465 V L + G +++ RIT S+L G Sbjct: 427 VVHLAADEAGAPTGALVRARITRAGGSSLSG 457 >gi|220932005|ref|YP_002508913.1| RNA modification enzyme, MiaB family [Halothermothrix orenii H 168] gi|219993315|gb|ACL69918.1| RNA modification enzyme, MiaB family [Halothermothrix orenii H 168] Length = 450 Score = 329 bits (843), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 175/447 (39%), Positives = 275/447 (61%), Gaps = 13/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++F+ +YGCQMNV+DS ++ M GY+ N++++AD+I++NTC +RE A +V+ + Sbjct: 4 RKYFILTYGCQMNVHDSEKLAGMLEEMGYKSTNNLEEADIIMVNTCAVRENAELRVFGRV 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142 G + LK ++ DL++ V GC+ Q + ++ + P V+++ G + +PEL++R Sbjct: 64 GDFKRLK----EKNPDLIIGVGGCMMQIDENARKLYEKYPHVDLIFGTHNIHHIPELIKR 119 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + + ++ E+ I D Y R+ A+++I +GC+ FCT+C+VPY RG E Sbjct: 120 IKEERGRIIEVWNQEEGL----IPDIPYKREDDFKAWISIIQGCNNFCTYCIVPYVRGRE 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + ++ EARKL GV EITLLGQNVN++ GK L E F+DLL L+ ++G+ R Sbjct: 176 RSRPAADIISEARKLASEGVKEITLLGQNVNSY-GKDLK-EDIDFADLLKRLNRVEGIKR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RY TSHPRD SD +IK + D + + HLPVQSGS RILK MNR +T EY +I +I Sbjct: 234 IRYMTSHPRDFSDKMIKIIKECDKVCEHFHLPVQSGSTRILKKMNRGYTQAEYLNLIKKI 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 +S PD +I++D IVGFPGET++DF+ T+ ++ ++ + A++FKYSPR GTP + +QV Sbjct: 294 KSQIPDYSITTDIIVGFPGETEEDFQETLKVIREVRFDMAYTFKYSPRKGTPAARHKDQV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E +K +RL L + + N G+ +EVLIE + +V+ Sbjct: 354 SEKIKQDRLTRLIEVQNSISLENNRKLKGKTVEVLIEGESRNNPDTFEGRTRTNKLVIVP 413 Query: 443 KNHNI-GDIIKVRITDVKISTLYGELV 468 +N N+ G I V+I V TLYGE++ Sbjct: 414 RNENLKGQIANVKINRVGSWTLYGEVI 440 >gi|225865753|ref|YP_002751131.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102] gi|225786232|gb|ACO26449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102] Length = 509 Score = 329 bits (843), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 273/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L+ NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLVANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + + ND GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV++TD K +L GELV Sbjct: 475 VAPKSLIGQLVKVKVTDAKTWSLNGELV 502 >gi|150390308|ref|YP_001320357.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkaliphilus metalliredigens QYMF] gi|229890435|sp|A6TR80|MIAB_ALKMQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|149950170|gb|ABR48698.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkaliphilus metalliredigens QYMF] Length = 476 Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 177/449 (39%), Positives = 283/449 (63%), Gaps = 17/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +YGCQMN +DS ++ + + GY N ++A+LI+ NTC +RE A KVY + Sbjct: 39 KKHLTVTYGCQMNEHDSEKLAGILQNIGYIETNDKNEANLIIYNTCCVRENAELKVYGNI 98 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++NLK KE DL + V GC+ Q +EI + V++V G ++ PELL Sbjct: 99 GSLKNLK----KEKHDLTIAVCGCMMQQPHVVKEIKSKYRHVDLVFGTHNLHKFPELLST 154 Query: 143 ARFGKRVVDTDYSVEDKFERLS-IVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + +++D + D +++ IV+G RK G+ AF+ I GC+ FCT+C+VP+TRG Sbjct: 155 S------MESDNMIIDVWDKEGDIVEGLPVTRKYGLKAFINIMFGCNNFCTYCIVPHTRG 208 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR + +++DE +L NG EITLLGQNVN++ GK L+ E+ F +LL L++I+G+ Sbjct: 209 RERSREVQEIIDEVEELAKNGTKEITLLGQNVNSY-GKTLE-EETDFGNLLKVLNKIEGI 266 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHP+D+SD LI A + +LHLP Q+GS+ ILK+MNR++T Y ++++ Sbjct: 267 ERIRFMTSHPKDLSDSLISAMTVCTKVCAHLHLPFQAGSNDILKAMNRKYTKEAYLELVE 326 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++RS P++A+++D IVGFPGET+DDF+ T+++V+K + A+++ YS R TP + M Sbjct: 327 KVRSKVPNVALTTDIIVGFPGETEDDFKETLNVVEKARFNSAYTYLYSLRQETPAAKMEN 386 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 V ++VK ER L + + N A + +++EVL+E K + KL+GR+P + V Sbjct: 387 HVPDDVKHERFNRLIEAVNRISGEINKAYLNKVVEVLVEGTSKTDDAKLMGRTPQSKLVN 446 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 +IG I++V+IT+ K +L GEL+ Sbjct: 447 FAGNKEDIGQIVRVKITEPKTFSLNGELL 475 >gi|78223499|ref|YP_385246.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter metallireducens GS-15] gi|123756395|sp|Q39TA3|MIAB_GEOMG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|78194754|gb|ABB32521.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter metallireducens GS-15] Length = 441 Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 182/447 (40%), Positives = 264/447 (59%), Gaps = 18/447 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++++GCQMNV DS ++ + +GY + +ADLI++NTC +R KA KVYS+LGR Sbjct: 7 LYIETFGCQMNVSDSEKVASLLRGEGYSQTPDSSEADLIIVNTCSVRAKAEHKVYSYLGR 66 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 R LK R LL+ V GCVAQ EGE +L+R P +++V G + LPE++ A G Sbjct: 67 FRKLKRDR-----RLLLGVGGCVAQQEGERLLKRVPWLDLVFGTHNLHLLPEMVRAAEQG 121 Query: 147 KRVVDTDYSVEDKFERLSIV----DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +R D+ D RL + +GG GVT F+T+ +GCD FC++C+VPY RG E Sbjct: 122 ERRAAVDFI--DNEARLDLFPQADEGG-----GVTRFVTVMQGCDNFCSYCIVPYVRGRE 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR +++ E R + GV E+TLLGQNVN++ G GE +F+ LL +S I GL R Sbjct: 175 ISRRSVEIIGEIRSAVAGGVREVTLLGQNVNSY-GLKTPGE-LSFAGLLREISAIDGLER 232 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+D+S LI +L L ++HLP Q+GSD IL MNR +T EY + + + Sbjct: 233 IRFTTSHPKDISPELIACFAELPKLCGHIHLPAQAGSDSILARMNRGYTRQEYLEKVAAL 292 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RP+I I+ D IVGFPGET+ DF T+ L++++ Y FSF YSPR T +++ +++ Sbjct: 293 RAARPEILITGDIIVGFPGETEADFLQTLSLMEEVRYTDIFSFAYSPRPETAAASLGDRI 352 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 ERL +Q R+ + + VG VL+E K +L GR+ V Sbjct: 353 MRKETTERLERVQGLQRDMTIERHAGFVGTCQAVLVEGMSKRGDQLYGRTDGNLIVNFAG 412 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 G ++ VRIT ++L GEL V Sbjct: 413 NPSLAGSLVDVRITRGYPNSLLGELAV 439 >gi|255657963|ref|ZP_05403372.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mitsuokella multacida DSM 20544] gi|260850164|gb|EEX70171.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mitsuokella multacida DSM 20544] Length = 444 Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 176/440 (40%), Positives = 270/440 (61%), Gaps = 16/440 (3%) Query: 32 YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 YGCQMN D+ RM + GYER SM++ADLI++NTC +RE A ++VY +G I+ LK Sbjct: 17 YGCQMNQSDAERMMGQLRTIGYERTESMEEADLILINTCCVRETAEDRVYGKIGEIKRLK 76 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFGKRV 149 +E +L+ + GC+AQ EG+ +++R+P ++ V+G + L +++ +A G V Sbjct: 77 ----RENPELIFGITGCMAQKEGDALIKRAPHIDFVLGTNKVHELTHVVQEIQAEHG-HV 131 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 VD + + + + G ++A++ I GC+ FCT+C+VPY RG E SR Sbjct: 132 VDVQLGETELPDDVPVARAG-----SLSAWVPIMYGCNNFCTYCIVPYVRGRERSRLPED 186 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 +V E + + NG E+TLLGQNVN++ G D + F+DLL + ++ G+ R+R+ TSH Sbjct: 187 IVHEVEEAVKNGYEEVTLLGQNVNSY---GKDHKLADFADLLKMVDKVPGIRRVRFMTSH 243 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P+D+SD +I A D + L ++HLPVQ GS+RILK+MNR +T YR ++ RIR+ PD+ Sbjct: 244 PKDLSDKVIAAIRDGEHLCEHIHLPVQYGSNRILKAMNRVYTVESYRDLVRRIRAAIPDV 303 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 ++++D IVGFPGETD+DF+ +D + +I Y A++F YS R GTP + M QVDE+VK E Sbjct: 304 SLTTDLIVGFPGETDEDFQQMLDFLREIRYDSAYTFIYSKRSGTPAATMENQVDESVKKE 363 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNIG 448 RL L E ++ N+ +G+ +E+++E K E +GR+ + V+ G Sbjct: 364 RLNALMAVQNEISLAINEKLLGKTLEIMVEGPSKNEPSVWMGRTRTNKIVLFAHAGEKPG 423 Query: 449 DIIKVRITDVKISTLYGELV 468 D I VRIT + L GE V Sbjct: 424 DFIDVRITHPQTWVLKGERV 443 >gi|304316819|ref|YP_003851964.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778321|gb|ADL68880.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 471 Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 183/463 (39%), Positives = 286/463 (61%), Gaps = 22/463 (4%) Query: 16 QIVDQCIVPQR-----FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70 +I++Q V R F +++YGCQMNV+DS ++ M GY ++++DAD+I+ NTC Sbjct: 19 EIINQMAVLNRDRYPKFHIETYGCQMNVHDSEKLAGMLTEMGYTHTDNLEDADVILFNTC 78 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVV 128 +RE A +++ + +++ LK + ++++ + GC+ Q + E I P +++V Sbjct: 79 CVREHAEIRIFGRVSQLKELKQRK----PNIILGICGCMMQEKEVVEAIKNDYPYIDIVF 134 Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFE-RLSIV-DGGYNRKRGVTAFLTIQEGC 186 G ++ PELL+ + +++D ++ D ++ SIV D R G+ A++ I GC Sbjct: 135 GTHNLFKFPELLQES------LNSDTTIIDIWDDNKSIVEDIPIRRAEGLKAWVNIIYGC 188 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246 + FCT+C+VPY RG E SR +++E + L + G EITLLGQNVN++ G L K Sbjct: 189 NNFCTYCIVPYVRGREKSREPHDILNEIKSLANEGFKEITLLGQNVNSY-GNDLPI-KID 246 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F+DLLY +++I G+ R+R+ TSHP+D+SD LI A DLD L +LHLPVQSGS++IL+ M Sbjct: 247 FADLLYMINDIDGIERIRFMTSHPKDISDKLIFAMRDLDKLCEHLHLPVQSGSNKILERM 306 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 NR+++ Y +II+++R P IAI++D IVGFPGETD DF+ T+DLV ++ Y A++F Sbjct: 307 NRKYSRERYLEIINKLRDNIPGIAITTDIIVGFPGETDKDFQDTLDLVKEVRYDSAYTFI 366 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EK 425 YS R GTP M QVDE++K +RL L + N+ G+++EVL+E K + Sbjct: 367 YSKRKGTPAEKMSNQVDEDIKHKRLEELINLQNIISIEKNNEMKGKVVEVLVEGTSKRDS 426 Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 KL GR+ + V +K IG + V+I D K T+ GEL+ Sbjct: 427 EKLTGRTRTNKIVHFKAKPELIGKFVNVKIIDTKAWTMQGELI 469 >gi|229162708|ref|ZP_04290665.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803] gi|228620590|gb|EEK77459.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803] Length = 509 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 272/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDFEYGLGDLMDELRKVD-IA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + + ND GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNKLAIEKNDRYKGQIVEVLVDGESKNNAEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV++TD K +L GELV Sbjct: 475 VAPKSLIGQLVKVKVTDAKTWSLNGELV 502 >gi|30263778|ref|NP_846155.1| hypothetical protein BA_3908 [Bacillus anthracis str. Ames] gi|47529199|ref|YP_020548.1| hypothetical protein GBAA_3908 [Bacillus anthracis str. 'Ames Ancestor'] gi|49186622|ref|YP_029874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus anthracis str. Sterne] gi|165872391|ref|ZP_02217026.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167635860|ref|ZP_02394169.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|167639855|ref|ZP_02398124.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170687836|ref|ZP_02879050.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|170706889|ref|ZP_02897347.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|177652051|ref|ZP_02934597.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190568422|ref|ZP_03021329.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|227813320|ref|YP_002813329.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. CDC 684] gi|229602893|ref|YP_002868014.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. A0248] gi|254683519|ref|ZP_05147379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. CNEVA-9066] gi|254722040|ref|ZP_05183829.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. A1055] gi|254735812|ref|ZP_05193518.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. Western North America USA6153] gi|254739662|ref|ZP_05197356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. Kruger B] gi|254751058|ref|ZP_05203097.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. Vollum] gi|254759376|ref|ZP_05211401.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. Australia 94] gi|81583703|sp|Q81WR0|MIAB_BACAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|30258422|gb|AAP27641.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gi|47504347|gb|AAT33023.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180549|gb|AAT55925.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|164711829|gb|EDR17371.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167512256|gb|EDR87633.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|167528817|gb|EDR91575.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|170128307|gb|EDS97176.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|170668152|gb|EDT18901.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|172082420|gb|EDT67485.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190560426|gb|EDV14404.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|227004716|gb|ACP14459.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. CDC 684] gi|229267301|gb|ACQ48938.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str. A0248] Length = 509 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 182/448 (40%), Positives = 272/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + + ND GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++K+++TD K +L GELV Sbjct: 475 VAPKSLIGQLVKIKVTDAKTWSLNGELV 502 >gi|169830740|ref|YP_001716722.1| RNA modification protein [Candidatus Desulforudis audaxviator MP104C] gi|229890512|sp|B1I241|MIAB_DESAP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|169637584|gb|ACA59090.1| RNA modification enzyme, MiaB family [Candidatus Desulforudis audaxviator MP104C] Length = 443 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 181/452 (40%), Positives = 279/452 (61%), Gaps = 23/452 (5%) Query: 25 QRFFVKS--YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +R FV + +GCQMN +DS M + GYE S+ +ADL+++NTC +RE A +V+ Sbjct: 4 ERKFVHTITFGCQMNEFDSELMTGLLEGMGYEPAKSLREADLVLINTCCVRESAENRVWG 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140 LG ++ K ++ +L+V V+GC+ Q EG EEI+RR P+V++V+G + LP L+ Sbjct: 64 LLGSLKRYK----RDKPELIVAVSGCLPQQEGTAEEIIRRFPVVDLVLGTHNRHELPGLI 119 Query: 141 ERARFGKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 E R G+R V D +V + RK G+ A++ + GC+ FCT+CVVP Sbjct: 120 EEVRAGRRPVLGVRQPDSAVPEGLP--------VRRKSGLRAWVPVIHGCNNFCTYCVVP 171 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 Y RG E SR VVDE L G E+TLLGQNVN++ G+ L GE F+ LL L Sbjct: 172 YVRGRECSRRPDAVVDEVCGLAAAGYREVTLLGQNVNSY-GRDL-GEGIDFAALLARLDG 229 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 ++GL R+R+TTSHPRD +D LI+ + ++HLP Q+GS+R+L+ MNR +T +Y Sbjct: 230 VEGLWRIRFTTSHPRDFTDRLIEVVARAAKVCEHIHLPAQAGSNRVLQRMNRGYTREDYL 289 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++ RIR+ PD+++++D +VGFPGET++DF T+DLV ++GY QAF+F Y+PR GTP + Sbjct: 290 DLVARIRAAVPDVSLTTDLMVGFPGETEEDFADTLDLVRRVGYDQAFTFVYNPRRGTPAA 349 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWL 435 +QV E+VK+ R+ L + +E ++ N A G+++EVL+E + L+ GRS Sbjct: 350 GWPDQVPEDVKSRRIQELIQVQKEIGLARNRAEEGKVLEVLVEGPSATRPDLLSGRSRTN 409 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 ++VV + G +++VR+ ++ L G + Sbjct: 410 KTVVFPGEPGLAGQLVRVRVEVGHLTYLAGRV 441 >gi|312875820|ref|ZP_07735810.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor lactoaceticus 6A] gi|311797301|gb|EFR13640.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor lactoaceticus 6A] Length = 471 Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 174/447 (38%), Positives = 278/447 (62%), Gaps = 14/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + +YGCQMNV+DS ++ M + GY ++ +ADLI+ NTC +RE A +VY + Sbjct: 36 KKYHIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK+ + DL++ V GC+ Q +++ + P ++++ G ++ ++ P+LL Sbjct: 96 GPLKRLKDKK----PDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K+ V ED +V+G R++GV+AF+ I GC+ FC++C+VPY RG Sbjct: 152 AITEKKTVIDVSEDED-----VVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGR 206 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++ E +L NGV E+TLLGQNVN++ GK L G TF LL ++EIKG+ Sbjct: 207 ERSRRPEEIIYEIEQLAQNGVKEVTLLGQNVNSY-GKDL-GNGITFPKLLEKVNEIKGIE 264 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D+SD LI A DL+ + ++HLPVQSGS RILK+MNR +T +Y +++++ Sbjct: 265 RIRFVTSHPKDLSDELIVAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +++ PDIAI++D IVGFPGETD+DF T+D+ K+ + A++F YS R GTP M Q Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQ 384 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V +++K +R L K + E + N +G+ E+LI+ K LVGR+ + V + Sbjct: 385 VPDDIKHQRFQQLVKLIEEIALKKNRQMLGKTYEILIDGRSKRNNLLVGRTRTNKVVNVK 444 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + + V+I + LYGE++ Sbjct: 445 CPEEFMFKFVNVKILEAAEHWLYGEVI 471 >gi|312622276|ref|YP_004023889.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor kronotskyensis 2002] gi|312202743|gb|ADQ46070.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor kronotskyensis 2002] Length = 471 Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 173/447 (38%), Positives = 277/447 (61%), Gaps = 14/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + +YGCQMNV+DS ++ + + GY ++ +ADLI+ NTC +RE A +VY + Sbjct: 36 KKYHIVTYGCQMNVHDSEKLAGILNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNI 95 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DL++ V GC+ Q +++ + P ++++ G ++ ++ P+LL Sbjct: 96 GPLKRLKEKK----PDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYT 151 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K+ V ED +V+G R++GV+AF+ I GC+ FC++C+VPY RG Sbjct: 152 AITEKKTVIDVSEDED-----VVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGR 206 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++ E +L NG+ E+TLLGQNVN++ GK L G TF LL ++EIKG+ Sbjct: 207 ERSRQPEEIIYEIEQLAQNGIKEVTLLGQNVNSY-GKDL-GNNITFPKLLEKVNEIKGIE 264 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D+SD LI A DL+ + ++HLPVQSGS RILK+MNR +T +Y +++++ Sbjct: 265 RIRFVTSHPKDLSDELIVAMRDLEKVCEHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +++ PDIAI++D IVGFPGETD+DF T+D+ K+ + A++F YS R GTP M Q Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQ 384 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V +N+K +R L K + E + N +G+ E+LI+ K LVGR+ + V + Sbjct: 385 VPDNIKHQRFQRLVKLVEEIALKKNRQMLGRTYEILIDGRSKRNNLLVGRTRTNKVVNVK 444 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + + V+I + LYGE++ Sbjct: 445 CSEEFMFKFVNVKILEAAEHWLYGEVI 471 >gi|295698304|ref|YP_003602959.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Candidatus Riesia pediculicola USDA] gi|291157316|gb|ADD79761.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Candidatus Riesia pediculicola USDA] Length = 445 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 175/450 (38%), Positives = 280/450 (62%), Gaps = 17/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GC MN YDS ++ D+FF + Y + +AD+I+LNTC +REKA EKV+ Sbjct: 6 KKIYIKTWGCDMNKYDSSKIIDIFFKKKKYSLAKTDTEADIILLNTCSVREKAQEKVFHQ 65 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140 LGR + LK ++I +L++ V GCVA + IL+R+P V+++ GP+T + LPE++ Sbjct: 66 LGRWKKLKKNKI----ELILCVGGCVASQMNKSILKRAPYVDIIFGPKTIHLLPEMIRSF 121 Query: 141 ERARFGKRVVDTDYSV-EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 E++R +++++ D + +KF++ ++ +++ ++I EGC+K C+FC+VP+TR Sbjct: 122 EKSR--RKIINIDSNFRNEKFQK-----NHETIRKDISSLISIIEGCNKKCSFCIVPFTR 174 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR L++++ E + L+ G EI LLGQNVNA+R +G+ FS L+ +S I G Sbjct: 175 GKEFSRPLNEILIEIKNLVSEGCREIHLLGQNVNAYRYVQKNGKIYDFSKLIQKISLING 234 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R++++T+HP + +I + + L+ Y+H+PVQSGSD IL+ M R +T Y++II Sbjct: 235 VKRIKFSTNHPNHFTQDVIDLYSTISQLVDYVHIPVQSGSDEILRKMRRPYTIERYKKII 294 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +IR VRPDI I SDFIVGFPGET +DF T+ LV +I + +FSF YS R GT S + Sbjct: 295 KKIREVRPDILIGSDFIVGFPGETKEDFLKTIQLVKEIDFDVSFSFMYSSRPGTEASLLR 354 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSV 438 + + + K RL LQ + Q + N V Q ++L+ K + KLVG S + V Sbjct: 355 DDTNGHEKRNRLYFLQNLIERQIIEHNKRMVNQTQKILVLSKDQNDPNKLVGFSNKNRKV 414 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG++I V+IT + LYG + Sbjct: 415 IFYGSKEMIGNLIDVKITHFYKNKLYGRAI 444 >gi|229134580|ref|ZP_04263390.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196] gi|229168512|ref|ZP_04296235.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621] gi|228614918|gb|EEK72020.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621] gi|228648841|gb|EEL04866.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196] Length = 509 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 185/448 (41%), Positives = 272/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S ++AD+I+LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DL++ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L +I + Sbjct: 237 ERSRRPEDIIKEIRHLAANGYREITLLGQNVNAY-GKDFEDIQYGLGDLMDELRKI-DIA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIDVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKETIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + E V+ N +GQI+EVL+E K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNEYAVNKNKRYIGQIVEVLVEGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+IT+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502 >gi|196034172|ref|ZP_03101582.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W] gi|196044479|ref|ZP_03111714.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108] gi|218904900|ref|YP_002452734.1| hypothetical protein BCAH820_3784 [Bacillus cereus AH820] gi|228916410|ref|ZP_04079977.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928822|ref|ZP_04091854.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935069|ref|ZP_04097899.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947493|ref|ZP_04109783.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123286|ref|ZP_04252490.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201] gi|229186011|ref|ZP_04313181.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1] gi|301055262|ref|YP_003793473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis CI] gi|229890419|sp|B7JJ50|MIAB_BACC0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890697|sp|A0RHE4|MIAB_BACAH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|195993246|gb|EDX57204.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W] gi|196024514|gb|EDX63186.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108] gi|218534759|gb|ACK87157.1| conserved hypothetical protein [Bacillus cereus AH820] gi|228597430|gb|EEK55080.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1] gi|228660062|gb|EEL15698.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201] gi|228812013|gb|EEM58344.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824639|gb|EEM70441.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830629|gb|EEM76234.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843213|gb|EEM88294.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300377431|gb|ADK06335.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus biovar anthracis str. CI] Length = 509 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 272/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + + ND GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV++TD K +L GELV Sbjct: 475 VAPKSLIGQLVKVKVTDAKTWSLNGELV 502 >gi|163941460|ref|YP_001646344.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus weihenstephanensis KBAB4] gi|229890426|sp|A9VS16|MIAB_BACWK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|163863657|gb|ABY44716.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus weihenstephanensis KBAB4] Length = 509 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 185/448 (41%), Positives = 272/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S ++AD+I+LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DL++ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L +I + Sbjct: 237 ERSRRPEDIIKEIRHLAANGYKEITLLGQNVNAY-GKDFEDIQYGLGDLMDELRKID-IA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIDVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKETIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + E V+ N +GQI+EVL+E K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNEYGVNKNKRYIGQIVEVLVEGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+IT+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502 >gi|77918818|ref|YP_356633.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pelobacter carbinolicus DSM 2380] gi|123756643|sp|Q3A594|MIAB_PELCD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|77544901|gb|ABA88463.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelobacter carbinolicus DSM 2380] Length = 438 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 174/447 (38%), Positives = 283/447 (63%), Gaps = 17/447 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F+++++GCQMNV DS ++ + S GY V+S + A+LI+LNTC IR +A KVY LGR Sbjct: 4 FYLETFGCQMNVVDSEQIVGLVQSLGYSSVDSPEQANLIILNTCSIRARAERKVYGHLGR 63 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + LK R +L++ V GCVAQ EG+ +L + P +++V G +RL +++ A Sbjct: 64 FKPLKQRR----PELIIAVCGCVAQQEGQRMLEKVPYLDIVCGTHNIHRLADMVRDAELH 119 Query: 147 K-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + R V+ D+ DK RL V+ F+T+ +GCD FC++C+VP+ RG E+SR Sbjct: 120 RARHVEVDFLEADKRRRLFPERAPSAE---VSRFVTVIQGCDNFCSYCIVPHVRGREVSR 176 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++V++E R L++ G EITL+GQNVN++ K + ++ +F+ LL ++E+ GL R+R+ Sbjct: 177 PSAEVLEEVRLLVEQGAREITLIGQNVNSYGCK--EDDEISFASLLRKVAEVDGLERIRF 234 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TSHP+D+SD LI DLD L ++HLPVQ+G D +LK+M R +T +Y I+R+R V Sbjct: 235 MTSHPKDLSDELIDCFADLDKLCKHIHLPVQAGGDAVLKAMRRGYTRDQYLGRIERLRRV 294 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+I ++SD IVGFPGET+ +F TMDL+++ + + +SF +S R GT +++ + + + Sbjct: 295 CPEIRMTSDVIVGFPGETESEFEQTMDLLERARFTEIYSFIFSARPGTSAADLPDDIPKE 354 Query: 386 VKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441 VK + R+L LQ+++ Q ++ +GQ++ VL+E ++ G+L GR+ W + V + Sbjct: 355 VKQQWFDRMLALQEEITRQ---YHQMDIGQVLPVLVEGSSRQGNGQLFGRTTWNRIVNFD 411 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G I+ VR+T ++ GE V Sbjct: 412 GNPDLVGRIVPVRLTVAYRNSHLGERV 438 >gi|118478993|ref|YP_896144.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus thuringiensis str. Al Hakam] gi|118418218|gb|ABK86637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus thuringiensis str. Al Hakam] Length = 524 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 272/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 81 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 140 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 141 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 196 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 197 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 251 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 252 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 309 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 310 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 369 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 370 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 429 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + + ND GQI+EVL++ K + L G + + V Sbjct: 430 VPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 489 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV++TD K +L GELV Sbjct: 490 VAPKSLIGQLVKVKVTDAKTWSLNGELV 517 >gi|65321098|ref|ZP_00394057.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str. A2012] Length = 524 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 182/448 (40%), Positives = 272/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 81 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 140 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 141 GHLKSLK----RRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 196 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 197 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 251 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 252 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 309 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 310 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 369 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 370 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 429 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + + ND GQI+EVL++ K + L G + + V Sbjct: 430 VPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 489 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++K+++TD K +L GELV Sbjct: 490 VAPKSLIGQLVKIKVTDAKTWSLNGELV 517 >gi|225850314|ref|YP_002730548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Persephonella marina EX-H1] gi|225646637|gb|ACO04823.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Persephonella marina EX-H1] Length = 438 Score = 327 bits (838), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 174/448 (38%), Positives = 283/448 (63%), Gaps = 19/448 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++++++++GCQMN+ DS +M M + GYE +DAD+I++NTC +REK +KV S L Sbjct: 2 KKYYIRTFGCQMNINDSQKMAGMLKTLGYEPARDWEDADIILVNTCSVREKPDQKVLSAL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G + +KN + D ++ V GC+AQ G EIL+++P V++V G + LP+LLE A Sbjct: 62 GEFKKIKNKK----PDAVIGVCGCLAQRAGYEILQKAPFVDMVFGTTNIHHLPKLLEEAL 117 Query: 145 FGKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G + V D D + E + ++ V R+ TA++T+ GCDK CT+C+VPYTRG Sbjct: 118 QGNKAVEILEDIDQN-ETELDKYPTV-----RENRYTAYVTVMRGCDKKCTYCIVPYTRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR + +++ E + LID+GV EI L+GQNV A+ G D F DLLY++++++G+ Sbjct: 172 KERSRRIGEILQEVQWLIDDGVKEIHLIGQNVTAY---GKDLGDVRFVDLLYAVADVEGV 228 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TT HPRD+ + IKA ++ + +LHLP+Q+GSDRILK+M R +T EY + I+ Sbjct: 229 ERIRFTTGHPRDLDEETIKAMAEIPQICEHLHLPIQAGSDRILKAMERGYTQKEYLEKIE 288 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++ PDI++S+D IVGFPGET +D+ T+ ++ ++ Y Q F+FKYSPR GTP + M Sbjct: 289 LLKKYIPDISLSTDIIVGFPGETYEDYMETIKVLKEVEYDQVFAFKYSPRPGTPAAQMPM 348 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 D ++ L L L +++++F + V + +++G+ VGR+ + V + Sbjct: 349 TEDPKTLSKWLNDL--ILMQKEITFKKNLQYEGKTVEVLVEEEKEGRFVGRTRTNKLVHI 406 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +N+ +G+I+ V++T V +L GE + Sbjct: 407 EGRNNLLGEIVDVKVTKVNRFSLEGEAI 434 >gi|228986916|ref|ZP_04147043.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157351|ref|ZP_04285429.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342] gi|228626078|gb|EEK82827.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342] gi|228772865|gb|EEM21304.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 509 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 272/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + + ND GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV++TD K +L GELV Sbjct: 475 VAPKSLIGQLVKVKVTDAKTWSLNGELV 502 >gi|49478367|ref|YP_037833.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141716|ref|YP_085113.1| tRNA 2-methylthioadenine synthetase [Bacillus cereus E33L] gi|196038441|ref|ZP_03105750.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|81395139|sp|Q6HF43|MIAB_BACHK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|81686624|sp|Q636Q4|MIAB_BACCZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|49329923|gb|AAT60569.1| conserved hypothetical protein, possible tRNA 2-methylthioadenine synthetase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975185|gb|AAU16735.1| conserved hypothetical protein; possible tRNA 2-methylthioadenine synthetase [Bacillus cereus E33L] gi|196030849|gb|EDX69447.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] Length = 509 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 271/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKALK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + + ND GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV++TD K +L GELV Sbjct: 475 VAPKSLIGQLVKVKVTDAKTWSLNGELV 502 >gi|229012956|ref|ZP_04170121.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048] gi|228748210|gb|EEL98070.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048] Length = 509 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 184/448 (41%), Positives = 272/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S ++AD+I+LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DL++ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L +I + Sbjct: 237 ERSRRPEDIIKEIRHLAANGYKEITLLGQNVNAY-GKDFEDIQYGLGDLMDELRKI-DIA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD + LI G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDNHLIDVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKETIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + E V+ N +GQI+EVL+E K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNEYAVNKNKRYIGQIVEVLVEGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+IT+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502 >gi|218234533|ref|YP_002368575.1| hypothetical protein BCB4264_A3871 [Bacillus cereus B4264] gi|229890421|sp|B7HDP7|MIAB_BACC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|218162490|gb|ACK62482.1| conserved hypothetical protein [Bacillus cereus B4264] Length = 509 Score = 326 bits (836), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 271/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ PD+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPDVVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + N GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+IT+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502 >gi|229071269|ref|ZP_04204493.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185] gi|229081024|ref|ZP_04213537.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2] gi|228702338|gb|EEL54811.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2] gi|228711890|gb|EEL63841.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185] Length = 509 Score = 326 bits (836), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 271/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ PD+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPDVVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + N GQI+EVL++ K + L G + + V Sbjct: 415 VPMQVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+IT+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502 >gi|228954049|ref|ZP_04116078.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805615|gb|EEM52205.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 509 Score = 326 bits (836), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 271/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ PD+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPDVVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + N GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+IT+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502 >gi|197117156|ref|YP_002137583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter bemidjiensis Bem] gi|229890543|sp|B5EE49|MIAB_GEOBB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|197086516|gb|ACH37787.1| tRNA (2-methylthio-N6-dimethylallyl-A37) methylthiotransferase [Geobacter bemidjiensis Bem] Length = 441 Score = 326 bits (835), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 178/448 (39%), Positives = 273/448 (60%), Gaps = 17/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++++GCQMNV DS ++ + GY++ DADL++LNTC IR A ++VY L Sbjct: 5 KKLYLETFGCQMNVSDSEKIVTLMKGMGYQQTQDPVDADLVLLNTCSIRATAEQRVYGHL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G+ +++K + K G L++ V GCVAQ EGE++L+++P VN+V G + L ++ A Sbjct: 65 GKFKSIK--KTKPG--LIIGVGGCVAQQEGEKLLKKAPFVNLVFGTHNLHLLQGMVAAAE 120 Query: 145 FGKRVVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GKR TD+ E +F+ + + GVT F+T+ +GCD FC +C+VP+ RG EI Sbjct: 121 EGKRSSQTDFLDDEKRFDLFPHSEA----EGGVTRFVTVMQGCDNFCAYCIVPHVRGREI 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SRS ++VV+E R L D+GV E+TLLGQNVN++ K GE F DLL ++++ G+ R+ Sbjct: 177 SRSAAKVVEEVRALADSGVTEVTLLGQNVNSYCSK-QPGEP-DFPDLLRLVAQVDGIERI 234 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP+DMS LI+ DL L P++HLP QSGSDR+L+ MNR +TA +Y + ++ Sbjct: 235 RFTTSHPKDMSPRLIECFADLPKLAPHIHLPAQSGSDRVLERMNRGYTAQQYLAKVAALK 294 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P I + D IVGFPGE + F+ TM L++++ YA FSF YS R PG+ E D Sbjct: 295 EACPAIQFTGDMIVGFPGEDEAAFQDTMALMEQVQYADLFSFIYSAR---PGTKAAEYAD 351 Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 + +AE RL LQ ++ ++ N + G + +VL+E L GR+ + V+ Sbjct: 352 DATRAEKQGRLERLQAAQKKTTLARNRSLEGTVQKVLVEGLSSTGDSLFGRTGGNRGTVM 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 G ++ V+I + + L GE+V Sbjct: 412 AGDPSLAGRVLDVKIVEGLQTLLKGEIV 439 >gi|206972613|ref|ZP_03233555.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134] gi|229180049|ref|ZP_04307393.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W] gi|229191897|ref|ZP_04318867.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876] gi|206732426|gb|EDZ49606.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134] gi|228591448|gb|EEK49297.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876] gi|228603258|gb|EEK60735.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W] Length = 509 Score = 326 bits (835), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 271/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ PD+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPDVVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + N GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+IT+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502 >gi|148981402|ref|ZP_01816398.1| hypothetical protein VSWAT3_09558 [Vibrionales bacterium SWAT-3] gi|145960894|gb|EDK26224.1| hypothetical protein VSWAT3_09558 [Vibrionales bacterium SWAT-3] Length = 432 Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 179/407 (43%), Positives = 261/407 (64%), Gaps = 11/407 (2%) Query: 64 LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123 +++LNTC IREKA EKV+ LGR + LK+ + +++ V GCVA EG+ I +R+P Sbjct: 1 VLLLNTCSIREKAQEKVFHQLGRWKTLKDKK----EGVVIGVGGCVATQEGDHIRQRAPY 56 Query: 124 VNVVVGPQTYYRLPELLERARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182 V+V+ GPQT +RLPE+++ + + V+D + +KF+ L R G TAF++I Sbjct: 57 VDVIFGPQTLHRLPEMIKSSLSNEAPVMDISFPEIEKFDSLP-----EPRAEGATAFVSI 111 Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242 EGC K+CT+CVVPYTRG E+SR + V+ E +L + GV E+ LLGQNVNA+RG +G Sbjct: 112 MEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEVAQLAEQGVREVNLLGQNVNAYRGPTHEG 171 Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 + CTF++LL ++ I G+ R+R+TTSHP + D +I + D L+ +LHLPVQSGSDRI Sbjct: 172 DICTFAELLRLVASIDGIDRIRFTTSHPLEFGDDIIAVYEDTPELVSFLHLPVQSGSDRI 231 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L M R HTA EY+ II ++R RPDI ISSDFIVGFPGE++ DF+ TM L+ ++ + + Sbjct: 232 LTMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGESNQDFQDTMKLIKEVDFDMS 291 Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 FSF +SPR GTP ++ V E K +RL LQ+ + Q + ++ +G VL+E Sbjct: 292 FSFIFSPRPGTPAADYPCDVPEQEKKDRLYELQQTVNTQAMRYSRLMLGTEQRVLVEGPS 351 Query: 423 KEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 K+ +L R+ + V IG + V+IT+V ++L GE+V Sbjct: 352 KKNLMELRARTENSRVVNFEGSADLIGQFVDVKITEVFANSLRGEVV 398 >gi|47568277|ref|ZP_00238980.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241] gi|47555105|gb|EAL13453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241] Length = 509 Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 182/448 (40%), Positives = 272/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK +RL L + + + ND GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKKRLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV++TD K +L GELV Sbjct: 475 VAPKSLIGQLVKVKVTDAKTWSLNGELV 502 >gi|220929121|ref|YP_002506030.1| RNA modification enzyme, MiaB family [Clostridium cellulolyticum H10] gi|219999449|gb|ACL76050.1| RNA modification enzyme, MiaB family [Clostridium cellulolyticum H10] Length = 478 Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 178/451 (39%), Positives = 277/451 (61%), Gaps = 21/451 (4%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P R+ ++++GCQMN DS R+ M GY + D+DLI+ NTC +RE A +KVY Sbjct: 40 PVRYIIETFGCQMNENDSERLSGMLSGMGYSECSERKDSDLIIFNTCCVRENAEQKVYGH 99 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141 LG ++ LK + +L++ + GC+ Q + E I + V++V G Y+ PELL Sbjct: 100 LGALKKLKET----NPNLIIAICGCMMQQKDVVEHIKKTYKHVDIVFGTHNLYKFPELLN 155 Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 A + V+D S E + I +RK + A++T+ GC+ FC++C+VPY RG Sbjct: 156 TAITTRSTVIDVWDSTGSIAENMPI-----SRKENIKAWVTVMYGCNNFCSYCIVPYVRG 210 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SRSL ++ +E KL +G EITLLGQNVN++ GK L+G+ TF+ LL L++++G+ Sbjct: 211 RERSRSLEEIKNEVEKLAKDGCKEITLLGQNVNSY-GKDLEGD-LTFAGLLRELNKVQGI 268 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHP+D+SD LI A D + + +LHLPVQ+GS +IL MNRR++ +Y +I+ Sbjct: 269 ERIRFMTSHPKDLSDELIYAMRDCEKVCEHLHLPVQAGSSKILDEMNRRYSKEQYLGLIE 328 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +++S P IA+++D IVGFPGET++DF T+D+V K + A++F YS R GTP + E Sbjct: 329 KVKSNIPGIALTTDIIVGFPGETEEDFNETLDVVAKARFDMAYTFLYSKRTGTPAAKNPE 388 Query: 381 QVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQ 436 Q+ E VK + RLL LQ K+ ++ ND +G+ +EVL+E K K GR+ + Sbjct: 389 QIPETVKKQRFDRLLELQNKISKE---INDGLLGKELEVLVEGLSKSSKTTYTGRTRENK 445 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 V +G ++KV+I +++ +L G++ Sbjct: 446 IVNFKGSPDMVGKLVKVKIEEIQTWSLLGKI 476 >gi|229544354|ref|ZP_04433413.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 36D1] gi|229325493|gb|EEN91169.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 36D1] Length = 515 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 179/448 (39%), Positives = 269/448 (60%), Gaps = 15/448 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F++++YGCQMN +D+ M +F GY +++DAD+++LNTC IRE A KV+ +G Sbjct: 70 KFYIRTYGCQMNEHDTEVMAGIFMQLGYTPTETVEDADVVLLNTCAIRENAENKVFGEIG 129 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143 ++ LK E D+L+ V GC++Q E +IL++ P V++V G +RLP +L+ A Sbjct: 130 HLKPLKT----EKPDMLIGVCGCMSQEESVVNKILQKHPHVDMVFGTHNIHRLPHILKEA 185 Query: 144 RFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K +V +S E D E L V RK + A++ I GCDKFCT+C+VPYTRG E Sbjct: 186 YMSKAMVVEVWSKEGDVIESLPKV-----RKGNIKAWVNIMYGCDKFCTYCIVPYTRGKE 240 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR ++ E R+L G EITLLGQNVNA+ GK D + DL+ L +I + R Sbjct: 241 RSRRPEDIIQEVRELAAKGYKEITLLGQNVNAY-GKDFDDLEYGLGDLMDDLRKI-NIPR 298 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHPRD D LI+ L+ ++HLPVQSGS ILK M R++T +Y +++ +I Sbjct: 299 IRFTTSHPRDFDDRLIEVLAKKGNLVEHIHLPVQSGSSEILKIMGRKYTREQYLELVRKI 358 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++ PD+A+S+D IVGFP ET++ F T+ L ++G+ A++F YSPR GTP + M + + Sbjct: 359 KAAIPDVALSTDIIVGFPNETEEQFEETLSLYKEVGFETAYTFIYSPREGTPAARMKDNI 418 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441 VK ERL L + + + + GQ++EVL+E K + L G + + V Sbjct: 419 PMEVKKERLQRLNELVNAYSKAAMEKYEGQVVEVLVEGESKNNPEILAGYTRKNKLVNFK 478 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469 IG +++V+IT K +L GE+V Sbjct: 479 GPKSAIGKLVQVKITKAKTWSLDGEMVA 506 >gi|228992460|ref|ZP_04152388.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM 12442] gi|229000596|ref|ZP_04160136.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17] gi|229006018|ref|ZP_04163707.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4] gi|228755217|gb|EEM04573.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4] gi|228759151|gb|EEM08157.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17] gi|228767281|gb|EEM15916.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM 12442] Length = 509 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 184/448 (41%), Positives = 271/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+I+LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVILLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKPLK----QRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKATVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++E R L NG EITLLGQNVNA+ GK + + DL+ L +I + Sbjct: 237 ERSRRPEDIINEIRHLAANGYKEITLLGQNVNAY-GKDFEDLEYGLGDLMDELRKID-IA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RVRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDSAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + E + N GQI+EVL++ K L G + + V Sbjct: 415 VPMEVKKERLQRLNALVNEYSMEKNKRYKGQIVEVLVDGESKNNPDVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG ++KV++T+ K +L GELV Sbjct: 475 VAPKYAIGQLVKVKVTEAKTWSLNGELV 502 >gi|237668852|ref|ZP_04528836.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium butyricum E4 str. BoNT E BL5262] gi|237657200|gb|EEP54756.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium butyricum E4 str. BoNT E BL5262] Length = 456 Score = 325 bits (833), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 181/447 (40%), Positives = 271/447 (60%), Gaps = 17/447 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF++++GCQMN DS ++ M QGY ++A +I+ NTC +RE A KV+ LGR Sbjct: 21 FFIQTFGCQMNEEDSEKLSGMLKRQGYTPTEDKEEASIIIFNTCCVRENAENKVFGNLGR 80 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ R + DL++ + GC+ Q +G ++IL P V+++ G Y+ PE L R + Sbjct: 81 LK----KRKENNPDLIIAICGCMMQQKGMADKILNEYPYVDIIFGTHNSYKFPEYLNRVK 136 Query: 145 FGKRVVDTDYSVEDKFER-LSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +++ F++ IV+G +RK V AF+T+ GC+ FCT+CVVPY RG E Sbjct: 137 ------TEGVQIKEIFDKEAEIVEGVPIDRKSSVKAFVTVMYGCNNFCTYCVVPYVRGRE 190 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +E + L+ G EITLLGQNVN++ GKGL+ E+ TF+ LL ++EI+GL R Sbjct: 191 RSRKPQDIENEIKGLVAEGYKEITLLGQNVNSY-GKGLE-EEITFAQLLRRINEIEGLER 248 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHP+D++ +I+A D D L +HLP+QSGSD+ILK MNR +T Y + I Sbjct: 249 VRFMTSHPKDLNMDVIEAIRDCDKLCEQIHLPIQSGSDQILKVMNRHYTRDYYLNLAKAI 308 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PD+ S+D IVGFPGET++DF+AT+DLV ++ Y AF+F YS R TP M Q+ Sbjct: 309 RKEIPDVTFSTDLIVGFPGETEEDFQATLDLVREVKYDAAFTFIYSRRNHTPADKMENQI 368 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441 ++VK ER L + + E V N A G+++EVL+E K ++ +L GR+ + V Sbjct: 369 PDDVKHERFNRLVEAVNEGIVVGNKAMEGKVVEVLVEGTSKNDESRLTGRTRNAKLVNFP 428 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ V+I +L GE+V Sbjct: 429 GCKELIGKLVNVKIVKANSFSLVGEIV 455 >gi|228959979|ref|ZP_04121644.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799722|gb|EEM46674.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 509 Score = 325 bits (833), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ PD +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + N GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNSEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+IT+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502 >gi|289522346|ref|ZP_06439200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504182|gb|EFD25346.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 453 Score = 325 bits (833), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 183/445 (41%), Positives = 272/445 (61%), Gaps = 15/445 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + YGCQMN YD R+ +G+ + ++AD +V+ TC IREKA +KV S +GR Sbjct: 8 FAIDIYGCQMNQYDGDRLRTSLIRRGWIETDR-NEADAVVIVTCSIREKAEQKVLSEIGR 66 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 L ++ G L+ V GC+AQ G ++LRR P V VV GP+ +P+ LE A Sbjct: 67 YGKLYKTK----GKPLLAVIGCMAQNMGADLLRRFPQVKVVAGPRHIGWVPDALENAMRH 122 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K V+ Y ED E + + D R AF+TI GCD FCT+C+VPY RG +SR Sbjct: 123 KTVL---YLDEDPREMIDLHDAPMIRSNPYKAFVTIAHGCDNFCTYCIVPYVRGRFVSRR 179 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +++ E +L+D+GV E+TLLGQNV+++ GK L E FS+LL ++++ GL+R+R+T Sbjct: 180 PGEILKEVSELVDDGVLEVTLLGQNVDSY-GKDLK-ESYRFSNLLQDVAKVPGLLRVRFT 237 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHPRD ++ +I+A + + P ++LP+QSGSDRILK MNR +T +Y +II R+R Sbjct: 238 TSHPRDFTEDVIEAMAEESKICPAVNLPIQSGSDRILKKMNRGYTVEDYGRIIKRLREAL 297 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P+++I+SD IVGFPGET++DF+ T++++ + + + YSPR GTP +NM Q+ E Sbjct: 298 PEVSITSDLIVGFPGETEEDFQCTLEMLKTMEFDLVHTASYSPREGTPAANMSNQIPEEE 357 Query: 387 KAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSK 443 K RL + + + +SF N G+ EVL++ K KG L GR+P + V++ Sbjct: 358 KKRRLSIVNE--LQDAISFKKNKILEGKFFEVLLDDFAPKGKGMLQGRTPTDKVVLVPGD 415 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 +G + +VRIT LYGE+V Sbjct: 416 ESMLGKLCEVRITGASNWYLYGEIV 440 >gi|229086321|ref|ZP_04218499.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44] gi|228697016|gb|EEL49823.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44] Length = 509 Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 184/448 (41%), Positives = 269/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S DAD+I+LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTKDADVILLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKPLK----QRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKATVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++E R L NG EITLLGQNVNA+ GK + + DL+ L +I + Sbjct: 237 ERSRRPEDIINEIRHLAANGYKEITLLGQNVNAY-GKDFEDLEYGLGDLMDELRKID-IA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RVRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDSAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + E + N VGQI+EVL++ K L G + + V Sbjct: 415 VPMEVKKERLQRLNALVNEYSIEKNKRYVGQIVEVLVDGESKNNPDVLAGYTRANKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + I ++KV++T+ K +L GELV Sbjct: 475 VAPKSAIAQLVKVKVTEAKTWSLNGELV 502 >gi|158522366|ref|YP_001530236.1| RNA modification protein [Desulfococcus oleovorans Hxd3] gi|229890513|sp|A8ZVH2|MIAB_DESOH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|158511192|gb|ABW68159.1| RNA modification enzyme, MiaB family [Desulfococcus oleovorans Hxd3] Length = 466 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 176/410 (42%), Positives = 254/410 (61%), Gaps = 23/410 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +RF++ + GCQMNVYDS ++ + + G+ VN+ + ADL+ +NTC IR KA +K SF+ Sbjct: 2 KRFYIHTIGCQMNVYDSSQLSAILTAMGHRSVNAPEQADLVFVNTCTIRAKAKQKATSFV 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143 GR+ +K +R D++V V GC+AQ EG ++L P V++V G RLP ++ A Sbjct: 62 GRLAAMKRARP----DMIVGVGGCLAQEEGRQLLDAFPCVDIVFGTHALGRLPGHIQAVA 117 Query: 144 RFGKRVVDTDYS--VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G R+VD + + +++ L D GVT F+TI GCD FCT+CVVPY RG Sbjct: 118 HQGDRIVDVEMTAAIDESVHALQGPD-----SSGVTGFITIMRGCDNFCTYCVVPYVRGR 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGL 260 E SR+ ++DE R + G+ EITLLGQNVN++ K GL C+F+DLL ++EI GL Sbjct: 173 ETSRAPEHILDEIRARVAGGLREITLLGQNVNSYGQKEGL----CSFADLLARVNEIDGL 228 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP+D+S L A LD L ++HLP QSGSD +LK MNRR+T Y + + Sbjct: 229 HRIRFTTSHPKDLSPELAAAFTSLDKLCSHVHLPAQSGSDAVLKRMNRRYTRQAYLEKLH 288 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R +P +A+S+D IVGFPGET+ DF T+DL++K+ Y F+F YS R P Sbjct: 289 WLREAQPGMALSTDIIVGFPGETEQDFLQTLDLIEKVRYDSIFAFMYSDRPLAPARAFDG 348 Query: 381 QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 +VDE K +R LL LQ ++ ++ N A G++ +VL+E K G+ Sbjct: 349 KVDEAEKQQRIYALLELQNRITAEK---NRALEGRVEQVLVEGKSKSSGR 395 >gi|229047455|ref|ZP_04193047.1| hypothetical protein bcere0027_34400 [Bacillus cereus AH676] gi|228723899|gb|EEL75252.1| hypothetical protein bcere0027_34400 [Bacillus cereus AH676] Length = 509 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDPLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ PD +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + N GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+IT+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502 >gi|218898872|ref|YP_002447283.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9842] gi|228902275|ref|ZP_04066435.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL 4222] gi|228909596|ref|ZP_04073419.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL 200] gi|228966715|ref|ZP_04127759.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis serovar sotto str. T04001] gi|229890420|sp|B7ITM4|MIAB_BACC2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|218543596|gb|ACK95990.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9842] gi|228792814|gb|EEM40372.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis serovar sotto str. T04001] gi|228849885|gb|EEM94716.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL 200] gi|228857390|gb|EEN01890.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL 4222] Length = 509 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 182/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDVEYGLGDLMDELRKV-DIA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ PD +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + N GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV++T+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKVTEAKTWSLNGELV 502 >gi|229111245|ref|ZP_04240799.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15] gi|229129049|ref|ZP_04258022.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4] gi|229146344|ref|ZP_04274715.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24] gi|296504271|ref|YP_003665971.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171] gi|228636977|gb|EEK93436.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24] gi|228654286|gb|EEL10151.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4] gi|228672239|gb|EEL27529.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15] gi|296325323|gb|ADH08251.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171] Length = 509 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ PD +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + N GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+IT+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502 >gi|229151973|ref|ZP_04280169.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550] gi|228631528|gb|EEK88161.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550] Length = 509 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ PD +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + N GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+IT+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502 >gi|228922487|ref|ZP_04085789.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228940850|ref|ZP_04103410.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973771|ref|ZP_04134348.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980326|ref|ZP_04140637.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407] gi|228779431|gb|EEM27687.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407] gi|228785923|gb|EEM33925.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818864|gb|EEM64929.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228837201|gb|EEM82540.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|326941485|gb|AEA17381.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar chinensis CT-43] Length = 509 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 182/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ PD +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + N GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV++T+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKVTEAKTWSLNGELV 502 >gi|326202162|ref|ZP_08192032.1| RNA modification enzyme, MiaB family [Clostridium papyrosolvens DSM 2782] gi|325987957|gb|EGD48783.1| RNA modification enzyme, MiaB family [Clostridium papyrosolvens DSM 2782] Length = 477 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 181/452 (40%), Positives = 278/452 (61%), Gaps = 21/452 (4%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P R+ ++++GCQMN DS R+ M GY + D+DLI+ NTC +RE A +KVY Sbjct: 40 PARYNIETFGCQMNENDSERLSGMLSEMGYSECSERKDSDLIIFNTCCVRENAEQKVYGH 99 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141 LG ++ LK + +L++ + GC+ Q + E I + V+++ G Y+ PELL Sbjct: 100 LGALKKLKET----NPNLVIAICGCMMQQKEVVEHIKKTYKHVDIIFGTHNLYKFPELLN 155 Query: 142 RARFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 A + V+D S E + I +RK + A++T+ GCD FC++C+VPY RG Sbjct: 156 TAITTRSTVIDVWDSTGSIAENMPI-----SRKDNIKAWVTVMYGCDNFCSYCIVPYVRG 210 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SRSL ++ +E KL +G EITLLGQNVN++ GK L+G+ TF+ LL L++I+G+ Sbjct: 211 RERSRSLEEIKNEVEKLAVDGCKEITLLGQNVNSY-GKDLEGD-LTFAGLLRELNKIQGI 268 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHP+D+S+ LI A D + + +LHLPVQSGS ++L MNR++T +Y ++I+ Sbjct: 269 ERIRFMTSHPKDLSEELIYAIRDCEKVCEHLHLPVQSGSSKVLDEMNRKYTKEQYLKLIE 328 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +++S P IA+S+D IVGFPGET++DF T+D+V K + A++F YS R GTP + E Sbjct: 329 KVKSNIPGIALSTDIIVGFPGETEEDFDETLDVVAKARFDMAYTFLYSKRTGTPAAKNPE 388 Query: 381 QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQ 436 QV E+VK +R LL LQ K+ ++ ND +G+ +EVL+E K K GR+ + Sbjct: 389 QVPESVKKQRFDKLLELQNKISKE---INDEFLGKEMEVLVEGLSKSSKTTYTGRTRENK 445 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V +G ++KV+I +++ +L G V Sbjct: 446 IVNFKGNPDMVGKLVKVKIDEIQTWSLLGTKV 477 >gi|94269306|ref|ZP_01291426.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium MLMS-1] gi|93451266|gb|EAT02157.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium MLMS-1] Length = 446 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 184/450 (40%), Positives = 271/450 (60%), Gaps = 20/450 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++++GCQMN DS M + Y + ++AD IV+NTC IR KAA+K YS LG Sbjct: 5 LYIETFGCQMNERDSEIMVQLLAHDSYLETSRPEEADCIVVNTCSIRGKAAQKAYSLLGG 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 ++LK + L++ V GCVAQ +G+ +LR+ P +++VVGPQ YRLPEL+ AR Sbjct: 65 YKSLK----ERHPHLVIAVTGCVAQQDGQALLRKMPHLDLVVGPQNIYRLPELVAAARRQ 120 Query: 147 KRVVDTDYSVEDKFE---RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + FE L +D R F+TI +GC+ FCT+CVVP+TRG EI Sbjct: 121 AARQVAT-ELSPAFEIPPFLPAIDPAAANPR---RFVTIMQGCNNFCTYCVVPHTRGREI 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---GEKCTFSDLLYSLSEIKGL 260 SR +V E R L +GV E+TLLGQNVN++ GLD EK F LL + E+ G+ Sbjct: 177 SRKPEDIVAEVRHLAAHGVREVTLLGQNVNSY---GLDRPAAEKLPFPALLGKVVEVAGI 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP+D+S+ L+ A LD L P+ HLPVQSGSDR+L MNR+++ Y + + Sbjct: 234 DRVRFTTSHPKDLSEELMAAFARLDKLCPHFHLPVQSGSDRVLARMNRKYSRESYLEKVA 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R P+IAI++D IVGFPGE++ DF TM+L++++ Y AFSFKYS R + + Sbjct: 294 ALRQHCPEIAITTDIIVGFPGESEADFEQTMELLEQVRYDSAFSFKYSDRPNAAAARFAD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 +V E +K+ERL LQ + E VG+ +EV++E K++G+ GR+ + V Sbjct: 354 KVPEELKSERLSRLQARQDEISAEIRRTLVGRTVEVMVEGRSKKQGQWSGRTRENRIVNF 413 Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGELV 468 S+ H++ G ++ V + + +L G +V Sbjct: 414 PSE-HDLQPGQLLPVHLKETCRHSLRGVIV 442 >gi|317050742|ref|YP_004111858.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfurispirillum indicum S5] gi|316945826|gb|ADU65302.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfurispirillum indicum S5] Length = 441 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 179/446 (40%), Positives = 264/446 (59%), Gaps = 11/446 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 QR F+K+YGCQMN DS R+ + + GYE V+ + +ADL + NTC +REKA +KV+S + Sbjct: 3 QRAFIKTYGCQMNSGDSERIRGILVAHGYEMVSDVKEADLAIFNTCSVREKAEQKVFSDI 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R K + + GC+ Q + E ILR++P++++V G L + + A+ Sbjct: 63 GRLRGQKERH----PGFRIALCGCIPQVQREGILRKNPLIDIVFGVNNISGLMDFIAEAQ 118 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 GKR VED+F S D R+ + AF+TI GCD +C++C+VPYTRG E S Sbjct: 119 QGKRTC----RVEDEFFE-SEYDMPSQREDAMKAFVTIMNGCDNYCSYCIVPYTRGRERS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS ++ E R+L+D+GV E+TLLGQNVN++R + G F LL+ + +I L R+R Sbjct: 174 RSAPSILAEIRQLVDDGVREVTLLGQNVNSYRWQDKAGALVDFPQLLHLVHDIPELQRIR 233 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D S+ +++A L + YLHLP+Q+GS+RILK MNR +T EY I R++ Sbjct: 234 FVTSHPKDFSEAMMEAMA-LPRVCKYLHLPIQAGSNRILKLMNRGYTREEYLAKIARLKE 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P +A+SSDF+VGFPGET++DF TMD+++++ Y Q F F YS R T + M +QV Sbjct: 293 RIPGVALSSDFLVGFPGETEEDFLQTMDILEQVEYKQIFGFNYSVRPETKAATMADQVPF 352 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSK 443 V ERL L + +G + VL+E K L GR+ + V Sbjct: 353 EVMNERLNRLFAAQQSISHRLQQTYLGTTLGVLVEGASKNNPAMLAGRTDFNTIVHFAGG 412 Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469 IG ++ V I + + TLYGE++ Sbjct: 413 AELIGRLVDVHINETREFTLYGEVLA 438 >gi|229018968|ref|ZP_04175810.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273] gi|228742296|gb|EEL92454.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273] Length = 509 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 181/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDFEYGLGDLMDELRKV-DIA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKAGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ ++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPNAVFTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + N+ GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV++T+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKVTEAKTWSLNGELV 502 >gi|89100706|ref|ZP_01173562.1| YmcB [Bacillus sp. NRRL B-14911] gi|89084581|gb|EAR63726.1| YmcB [Bacillus sp. NRRL B-14911] Length = 514 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 181/448 (40%), Positives = 267/448 (59%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F+++++GCQMN +D+ M +F S GYE ++++DA++I+LNTC IRE A KV+ L Sbjct: 69 RKFYIRTFGCQMNEHDTEVMAGIFLSLGYEPTDTVEDANVILLNTCAIRENAENKVFGEL 128 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK KE DLL+ V GC++Q E +IL+ V+++ G +RLP +L+ Sbjct: 129 GHLKHLK----KERPDLLLGVCGCMSQEESVVNKILKTYDQVDMIFGTHNIHRLPNILQE 184 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V RK + A++ I GCDKFCT+C+VPYTRG Sbjct: 185 AYMSKEMVVEVWSKEGDVIENLPKV-----RKGNIKAWVNIMYGCDKFCTYCIVPYTRGK 239 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++ E R+L G EITLLGQNVNA+ GK + DL+ + +I + Sbjct: 240 ERSRRPEEIIQEVRQLAAQGYQEITLLGQNVNAY-GKDFTDLQYGLGDLMDEIRKI-DIP 297 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS +LK M R++T +Y +++ + Sbjct: 298 RIRFTTSHPRDFDDHLIEVLAKGGNLLEHIHLPVQSGSTDVLKIMARKYTREQYLELVRK 357 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ P+ ++D IVG+P ETD+ F T+ L ++GY A++F YSPR GTP + M + Sbjct: 358 IRAAIPNATFTTDIIVGYPNETDEQFEETLSLYKEVGYESAYTFIYSPREGTPAAKMKDN 417 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + E GQ +EVL+E K + L G + + V Sbjct: 418 VPMEVKKERLQRLNALVNEMSAEAMKKYHGQTVEVLVEGESKNNPEVLAGYTRKNKLVNF 477 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG I+ V+ITD K +L GE+V Sbjct: 478 KGPKSAIGKIVSVKITDAKTWSLNGEMV 505 >gi|94987263|ref|YP_595196.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lawsonia intracellularis PHE/MN1-00] gi|123385040|sp|Q1MQ52|MIAB_LAWIP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|94731512|emb|CAJ54875.1| 2-methylthioadenine synthetase [Lawsonia intracellularis PHE/MN1-00] Length = 457 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 183/467 (39%), Positives = 278/467 (59%), Gaps = 30/467 (6%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 ++ + F + ++GCQMN DS + +G++ V S++DA +I++NTC +REK +KVY Sbjct: 1 MLQRNFHIITFGCQMNTNDSFWLSCSLQKKGFQEV-SLEDASIIIINTCSVREKPEQKVY 59 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LG+IR+ K D VV+AGCVAQ G + P V +V G P+ +E Sbjct: 60 SILGKIRH----ATKNNPDSFVVIAGCVAQQLGATFFEKFPQVRLVSGSDGIAMAPDAIE 115 Query: 142 R--ARFGKRVVDTDYSV-----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 R A ++ TD+S E F +L++ + N + A++ I +GCD +CT+C+ Sbjct: 116 RLYAEPDLKLNLTDFSEYYPEREYAFSKLTLSN---NNTLALMAYVNIMQGCDNYCTYCI 172 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK------CTFS 248 VPYTRG + SRS+ +V+E ++LID+GV EI LLGQNVNA+ GLD +K F+ Sbjct: 173 VPYTRGKQKSRSVQAIVEECQQLIDSGVKEIVLLGQNVNAY---GLDKDKNSPANGVNFA 229 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 L+++++ + GL RLR+ ++HP++ S LI G+ L P LHLP+QSGSD+IL+ M R Sbjct: 230 MLVHTIASLPGLERLRFFSAHPKEFSSELIDLFGEFSTLCPRLHLPLQSGSDKILRRMGR 289 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 +++ EY II +++ VRPDIA+S+DFIVGFPGET++DF T+ ++ I + +FSF YS Sbjct: 290 KYSMDEYISIITKLKKVRPDIALSTDFIVGFPGETEEDFLQTLQSINTIKFMSSFSFCYS 349 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK- 427 R GT S +VD VK +RL LQ E S+ + VG VL+EK ++K + Sbjct: 350 DRPGTRSSTFSNKVDHEVKIKRLEQLQATQLEHSTSWLKSRVGVETTVLLEKVSRKKAED 409 Query: 428 ---LVGRSPW--LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 GR PW + +V+L + ++ VRI K +L E ++ Sbjct: 410 NNSWQGRDPWGNVVNVILPQSTNISNTLLPVRIIASKKHSLVAEPLI 456 >gi|189425188|ref|YP_001952365.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter lovleyi SZ] gi|229890544|sp|B3E424|MIAB_GEOLS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|189421447|gb|ACD95845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter lovleyi SZ] Length = 438 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 179/445 (40%), Positives = 273/445 (61%), Gaps = 11/445 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++ + GCQMNV DS R+ M GY + + +A LI+ NTC +R A E L Sbjct: 4 KKLYIDTVGCQMNVNDSERIVTMLQPLGYTQTSRRHEAALILFNTCTVRAGAEE---CLL 60 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I NLKN + K+ G L + VAGCVAQ G E+L++ P V++V G + +PE+++ A Sbjct: 61 QNIANLKNLKRKKPGTL-IGVAGCVAQQMGAELLQKFPWVDLVFGTHNLHLVPEMVKDAE 119 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+R +TD+ D ERL + RKR V+AF+T+ +GCD FC++C+VPY RG EIS Sbjct: 120 AGRRRAETDFL--DSSERLDLFPPIEGRKR-VSAFVTVMQGCDNFCSYCIVPYVRGREIS 176 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRL 263 R ++++ E + L G+ E+ LLGQNVN++ GL GE + +F++L+ +++ + G+ R+ Sbjct: 177 RRFAEILQEVQDLAAQGLREVVLLGQNVNSY---GLKGEEQPSFAELVRAVAAVSGIDRV 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+DMSD LI DL L LHLP Q+G++RILK+MNR ++ Y + I ++R Sbjct: 234 RFVTSHPKDMSDDLIACFADLAKLCGSLHLPAQAGNNRILKAMNRGYSREHYLETIYKLR 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 RP+I I+ D IVGFPGET+ +F T+ L++++ Y FSF YSPR GT + + +++ Sbjct: 294 QARPEIKITGDMIVGFPGETEAEFEETLSLMEEVRYFDLFSFVYSPRPGTKAAELSDELA 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + VK RL LQK N+ VG +VL+E K G++ GR + V L Sbjct: 354 KEVKLARLDRLQKLQAVHSRIHNETYVGSTQQVLVEGLAKRHGQVSGRCDSGRIVNLAGS 413 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 IG ++ V+I + ++L GEL+ Sbjct: 414 PALIGKLVDVKILEGYANSLLGELL 438 >gi|152976138|ref|YP_001375655.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|229890423|sp|A7GRA2|MIAB_BACCN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|152024890|gb|ABS22660.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cytotoxicus NVH 391-98] Length = 509 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE + +DAD+I+LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFTTEDADVILLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK ++ DLL+ V GC++Q E +I+++ V++V G +RLP +L+ Sbjct: 126 GHLKPLK----QKNPDLLIGVCGCMSQEESVVNKIMQKHQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKATVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK D + DL+ L +I + Sbjct: 237 ERSRRPEDIIKEVRHLAANGYKEITLLGQNVNAY-GKDFDDLEYGLGDLMDELRKI-DIA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R++T +Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYTREQYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P++ +++D IVGFP ETD+ F T+ L ++ + AF+F YSPR GTP + M + Sbjct: 355 IKKTIPNVVLTTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 + VK ERL L + + E N GQI+EVL++ K L G + + V Sbjct: 415 IPMEVKKERLQRLNELVNEFSAKKNKKYEGQIVEVLVDGESKNNPDVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+IT+ K +L GELV Sbjct: 475 VAPKSVIGQLVKVKITEAKTWSLNGELV 502 >gi|67922391|ref|ZP_00515902.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification enzyme MiaB [Crocosphaera watsonii WH 8501] gi|67855735|gb|EAM50983.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification enzyme MiaB [Crocosphaera watsonii WH 8501] Length = 452 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 189/460 (41%), Positives = 280/460 (60%), Gaps = 29/460 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+R+ + ++GCQMN DS RM + G++ + ADLI+ NTC IR+ A +KVYS Sbjct: 4 TPRRYHITTFGCQMNKADSERMAGILEDMGFKWSQDPNGADLILYNTCTIRDNAEQKVYS 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +LGR + R + DL +VVAGCVAQ EGE+ILRR P +++V+GPQ RL +LL + Sbjct: 64 YLGR----QAKRKHKNPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLEDLLTQ 119 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRG 200 G +V+ T E + IV+ +R VTA++ I GC++ C++CVVP RG Sbjct: 120 VFDGNQVIAT--------EPIHIVEDITKPRRDSTVTAWVNIIYGCNEKCSYCVVPSVRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSL 254 +E SR+ + E L G E+TLLGQN++A+ G+ L G K T +DLLY + Sbjct: 172 VEQSRTPEAIYAEMELLAKQGYKEVTLLGQNIDAY-GRDLPGVTASGRHKHTLTDLLYQV 230 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 +I G+ RLR+ TSHPR ++ LIKA +L + + H+P QSG + +LK+M R +T + Sbjct: 231 HDIPGIERLRFATSHPRYFTERLIKACDELPKVCEHFHIPFQSGDNDVLKAMKRGYTHQK 290 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 YR+IID+IR PD +IS+D IVGFP ET++ F T+ LVD IG+ Q + YSPR GTP Sbjct: 291 YRKIIDKIREYMPDASISADAIVGFPEETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTP 350 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP 433 + +Q+ E VK++RL L + ++ + +G+I EVL+E ++ K+ +++GR+ Sbjct: 351 AALWEQQLSEEVKSDRLQRLNHLVAQKAAQRSQRYLGRIEEVLVEDQNPKDNSQVMGRT- 409 Query: 434 WLQSVVLNSKNHNI----GDIIKVRITDVKISTLYGELVV 469 Q L NI G +IKV IT+V+ +L GE +V Sbjct: 410 --QGNRLTFCKGNIDELKGQLIKVEITEVRAFSLTGEAIV 447 >gi|206977875|ref|ZP_03238763.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97] gi|217961193|ref|YP_002339761.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH187] gi|222097218|ref|YP_002531275.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus cereus Q1] gi|229140413|ref|ZP_04268968.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26] gi|229197883|ref|ZP_04324599.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293] gi|229890422|sp|B7HLA6|MIAB_BACC7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|206743875|gb|EDZ55294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97] gi|217064945|gb|ACJ79195.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH187] gi|221241276|gb|ACM13986.1| conserved hypothetical protein [Bacillus cereus Q1] gi|228585601|gb|EEK43703.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293] gi|228642974|gb|EEK99250.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26] gi|324327666|gb|ADY22926.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 509 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 181/448 (40%), Positives = 271/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S ++AD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKALK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + + N+ GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNALVNKLAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV++TD K +L GELV Sbjct: 475 VAPKSLIGQLVKVKVTDAKTWSLNGELV 502 >gi|42782856|ref|NP_980103.1| hypothetical protein BCE_3806 [Bacillus cereus ATCC 10987] gi|81409496|sp|Q732V4|MIAB_BACC1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|42738783|gb|AAS42711.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 509 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 181/448 (40%), Positives = 271/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S ++AD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKALK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + + N+ GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNALVNKLAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV++TD K +L GELV Sbjct: 475 VAPKSLIGQLVKVKVTDAKTWSLNGELV 502 >gi|229061375|ref|ZP_04198721.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603] gi|228717914|gb|EEL69560.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603] Length = 509 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 271/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S ++AD+I+LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + L++ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPALIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L +I + Sbjct: 237 ERSRRPEDIIKEIRHLAANGYKEITLLGQNVNAY-GKDFEDIQYGLGDLMDELRKI-DIA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD + LI G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDNHLIDVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKETIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + E V+ N +GQI+EVL+E K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNEYAVNKNKRYIGQIVEVLVEGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+IT+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502 >gi|94264310|ref|ZP_01288103.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium MLMS-1] gi|93455276|gb|EAT05486.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium MLMS-1] Length = 446 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 185/451 (41%), Positives = 272/451 (60%), Gaps = 22/451 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++++GCQMN DS M + Y + ++AD IV+NTC IR KAA+K YS LG Sbjct: 5 LYIETFGCQMNERDSEIMVQLLAHDSYLETSRPEEADCIVVNTCSIRGKAAQKAYSLLGG 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 ++LK + L++ V GCVAQ +G+ +LR+ P +++VVGPQ YRLPEL+ AR Sbjct: 65 YKSLK----ERHPHLVIAVTGCVAQQDGQALLRKMPHLDLVVGPQNIYRLPELVAAARQQ 120 Query: 147 KRVVDTDYSVEDKFE---RLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + FE L +D N +R F+TI +GC+ FCT+CVVP+TRG E Sbjct: 121 AARQVAT-ELSPAFEIPPFLPAIDPAAVNPRR----FVTIMQGCNNFCTYCVVPHTRGRE 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---GEKCTFSDLLYSLSEIKG 259 ISR +V E R L +GV E+TLLGQNVN++ GLD EK F LL + E+ G Sbjct: 176 ISRKPEDIVAEVRHLAAHGVREVTLLGQNVNSY---GLDRPAAEKLPFPALLGKVVEVAG 232 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+TTSHP+D+S+ L+ A LD L P+ HLPVQSGSDR+L MNR+++ Y + Sbjct: 233 IDRVRFTTSHPKDLSEELMAAFARLDKLCPHFHLPVQSGSDRVLARMNRKYSRESYLAKV 292 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +R P+IAI++D IVGFPGE++ DF TM+L++++ Y AFSFKYS R + Sbjct: 293 AALRQHCPEIAITTDIIVGFPGESEADFEQTMELLEQVRYDSAFSFKYSDRPNAAAARFA 352 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 ++V E +K+ERL LQ + E VG+ +EV++E K++G+ GR+ + V Sbjct: 353 DKVPEELKSERLSRLQARQDEISAEIRRTLVGRTVEVMVEGRSKKQGQWSGRTRENRIVN 412 Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468 S+ H++ G ++ V + + +L G +V Sbjct: 413 FPSE-HDLQPGQLLPVHLKETCRHSLRGVIV 442 >gi|30021864|ref|NP_833495.1| tRNA 2-methylthioadenosine synthase [Bacillus cereus ATCC 14579] gi|81432671|sp|Q812Y0|MIAB_BACCR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|29897420|gb|AAP10696.1| tRNA 2-methylthioadenosine synthase [Bacillus cereus ATCC 14579] Length = 509 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 182/448 (40%), Positives = 269/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + D L+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDFLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKVD-IA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ PD +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + N GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+IT+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502 >gi|313888326|ref|ZP_07821997.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845729|gb|EFR33119.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Peptoniphilus harei ACS-146-V-Sch2b] Length = 466 Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 179/458 (39%), Positives = 284/458 (62%), Gaps = 21/458 (4%) Query: 18 VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 + + + +R V ++GCQMN +DS ++ + GY VN +D+AD I+LNTC +R A Sbjct: 21 IKESVDEKRALVITHGCQMNEHDSEKITWLLEKMGYSFVNEIDEADFIILNTCSVRHSAE 80 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE--ILRRSPIVNVVVGPQTYYR 135 +KVY LG ++NLK+ + + + V GC+ Q + ++ + P V+++ G ++ Sbjct: 81 DKVYGQLGNLKNLKSKKKN----IKIAVCGCMMQRDESRNYVIEKFPNVDIIFGTNNIWK 136 Query: 136 LPELLERARFGKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 LPELL + G ++ + S++DK G NR +++ I GC+ FC+ Sbjct: 137 LPELLTASYNGTKLAMDIEENALSIDDKL--------GANRLYNFKSYVNIMYGCNNFCS 188 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 +C+VPYTRG E SR +++ E L +G E+TLLGQNVN++ GK LD EK +F++LL Sbjct: 189 YCIVPYTRGRETSRRPGEIIREIEDLARHGTKEVTLLGQNVNSY-GKTLD-EKFSFANLL 246 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +++IKG+ R+R+ TSHP+D+SD LI + +LD L +LHLPVQ+GS R+LK MNR++T Sbjct: 247 EEINDIKGIERIRFMTSHPKDISDELIYSFKNLDKLCNFLHLPVQAGSSRVLKMMNRKYT 306 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 +Y + ID+++S+ P+IA+S+D +VGFPGE+++DF T+DLV K+ Y AF+F YS R Sbjct: 307 REDYLRKIDKVKSLNPNIALSTDIMVGFPGESEEDFLDTLDLVKKVEYDTAFTFIYSVRE 366 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVG 430 TP +N +QV + VK +R L L Q N A +G+ ++VL+E K + K+ G Sbjct: 367 NTPAANRTDQVPDKVKHDRFERLLDVLYPIQERKNKAFIGKDVDVLVEDISKKNESKVSG 426 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 R+ + V +++G+I+KVRI D +L GE + Sbjct: 427 RTDEFKLVNFKGDKNDVGNIVKVRIKDANSFSLVGEKI 464 >gi|125973301|ref|YP_001037211.1| RNA modification protein [Clostridium thermocellum ATCC 27405] gi|256003782|ref|ZP_05428770.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM 2360] gi|281417504|ref|ZP_06248524.1| RNA modification enzyme, MiaB family [Clostridium thermocellum JW20] gi|229890498|sp|A3DDI9|MIAB_CLOTH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|125713526|gb|ABN52018.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium thermocellum ATCC 27405] gi|255992343|gb|EEU02437.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM 2360] gi|281408906|gb|EFB39164.1| RNA modification enzyme, MiaB family [Clostridium thermocellum JW20] gi|316940466|gb|ADU74500.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM 1313] Length = 480 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 177/451 (39%), Positives = 275/451 (60%), Gaps = 25/451 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + + ++GCQMN +DS ++ M GY ++++++DL++ NTC +RE A KVY LG Sbjct: 45 YCLNTFGCQMNEHDSEKLAGMLAEMGYAETDNVNESDLVIYNTCCVRENAELKVYGHLGM 104 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ LKN + DL++ V GC+ Q E I + V+++ G Y+ PELL A Sbjct: 105 LKPLKNQK----PDLVIAVCGCMMQQPEVVEHIKKTYSHVDLIFGTHNLYKFPELLYSA- 159 Query: 145 FGKRVVDTDYSVEDKFERLSIVDG------GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 +D+ +V D ++ DG RK GV A++T+ GC+ FCT+C+VPY Sbjct: 160 -----MDSQTTVVDVWD----CDGQIAENVAIERKDGVKAWVTVMYGCNNFCTYCIVPYV 210 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG E SRS+ +++E R L G EITLLGQNVN++ GK + G+ +F++L+ +++I Sbjct: 211 RGRERSRSMDDILEEVRMLGRQGFKEITLLGQNVNSY-GKDI-GDGTSFAELIREVNKIP 268 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R+R+TTSHP+D+SD LI A D + + +LHLP Q+GS RILK MNR++T +Y + Sbjct: 269 GIERIRFTTSHPKDLSDDLIYAMRDCEKVCEHLHLPFQAGSTRILKLMNRKYTKEDYINL 328 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + +I+ PDIA+++D IVGFPGET++DF T+D+++K+ + A++F YS R GTP + M Sbjct: 329 VAKIKENIPDIALTTDIIVGFPGETEEDFSDTLDILEKVRFDNAYTFLYSKRTGTPAAKM 388 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQS 437 +QV E VK ER L + ND +G+++EVL+E K K+ GR+ + Sbjct: 389 EDQVPEEVKKERFQRLLETQNRISKEINDTFLGKVVEVLVEGVSKTNDKIFTGRTRGNKV 448 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + IG ++ VRI VK +L G +V Sbjct: 449 VNFEADASLIGKLVNVRINTVKTWSLEGSIV 479 >gi|229174437|ref|ZP_04301969.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3] gi|228608997|gb|EEK66287.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3] Length = 509 Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 181/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDFEYGLGDLMDELRKVD-IA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ ++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPNAVFTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + N+ GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV++T+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKVTEAKTWSLNGELV 502 >gi|229098241|ref|ZP_04229188.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29] gi|229104336|ref|ZP_04235005.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28] gi|229117258|ref|ZP_04246636.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3] gi|228666158|gb|EEL21622.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3] gi|228679034|gb|EEL33242.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28] gi|228685139|gb|EEL39070.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29] Length = 509 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 182/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDLEYGLGDLMDELRKVD-IA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKETIPSAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + V N+ GQ++EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNGLAVEKNNRYKGQVVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+IT+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKITEAKTWSLNGELV 502 >gi|301064673|ref|ZP_07205062.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [delta proteobacterium NaphS2] gi|300441215|gb|EFK05591.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [delta proteobacterium NaphS2] Length = 439 Score = 322 bits (825), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 176/450 (39%), Positives = 274/450 (60%), Gaps = 18/450 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +RF +++ GCQMN YDS + G+ + AD+I++NTC +R K +K SFL Sbjct: 3 KRFHIQTMGCQMNEYDSDFLAQSLIKNGFLPEEQVHRADIILINTCAVRAKPEQKACSFL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--- 141 GR+ +LK ++ +L+V + GC+AQ +G+E++RR P+++ V+GP+ R+ E +E Sbjct: 63 GRMADLK----EKNPELIVGMIGCLAQMKGKELIRRFPLLDFVMGPRELERIVECIEGIY 118 Query: 142 --RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 R RF ++ K GY + R + F++I EGC+ FC++C+VPY R Sbjct: 119 KKRQRFVATALNGVPPSPVKCT-------GYFQNR-TSGFISIMEGCNNFCSYCIVPYVR 170 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E R+ +++EA LI G+ EITLLGQNVN++ K + FS LLY L+E+ Sbjct: 171 GREFFRAPEDILEEAEYLISEGIREITLLGQNVNSYVWKK-NHNNWNFSSLLYELAELDH 229 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L+RLR+TTSHP+D SD L+ ++ L ++HLP Q+GS+RILKSM R +T +Y II Sbjct: 230 LLRLRFTTSHPKDFSDELLACFAHIEKLAGHIHLPFQAGSNRILKSMRRGYTREQYLAII 289 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +I++ + DIAI+SD +VGFPGET++DF+ T+DL++++ + FSFKYS R GTP + M Sbjct: 290 RKIKTCKEDIAITSDVMVGFPGETEEDFQFTLDLIEQVQFDSLFSFKYSDREGTPAAEMS 349 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 E+++E VK RL LQ + N VG+ + VL+E K+ +L GR+P + V Sbjct: 350 EKINEKVKIARLQRLQDIQNGITLKKNQQLVGRQVTVLVEGASKKGEQLTGRTPSNKVVN 409 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + G +++V I +++L GE + Sbjct: 410 FDGDVALAGRLVEVVIKASYVNSLKGETIT 439 >gi|302389750|ref|YP_003825571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermosediminibacter oceani DSM 16646] gi|302200378|gb|ADL07948.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermosediminibacter oceani DSM 16646] Length = 439 Score = 322 bits (825), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 179/446 (40%), Positives = 268/446 (60%), Gaps = 13/446 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++ + ++GCQMN++D+ + + GY ++ +ADLI+LNTC +RE A KVY +G Sbjct: 3 KYHILTWGCQMNLHDTEVISGVLQKMGYCPAGNLKEADLIILNTCCVRENAERKVYGRIG 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143 +++ K + +L++ + GC+ Q E I P V+++ G ++LP+L+E A Sbjct: 63 QLKQFK----QRNPNLVLGICGCMIQQPHVVEYITEHFPYVDLIFGIHNVHKLPQLIENA 118 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R V + E D R+ + A++TI GC+ FCT+C+VPY RG E Sbjct: 119 RLANMTVIETGGESSQIEE----DLPVEREDKIKAWVTITYGCNNFCTYCIVPYVRGREK 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR+ +V E +L G EI LLGQNVN++ GK L G TF +LL L++I G+ R+ Sbjct: 175 SRNPEDIVREVEELAKQGFKEINLLGQNVNSY-GKDLGG-AVTFPELLRRLNDIDGIERI 232 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP+D+SD LI A D + ++HLPVQ+GS+RIL++MNRR+T Y +++ ++R Sbjct: 233 RFTTSHPKDLSDELIYAMRDCKKVCEHIHLPVQAGSNRILEAMNRRYTREHYMELVKKLR 292 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 DIAIS+D IVGFPGET++DF+ T+DLV ++ Y QAF F YS R GTP + M QVD Sbjct: 293 DAISDIAISTDIIVGFPGETEEDFQDTLDLVRRVEYDQAFMFVYSKRKGTPAAEMENQVD 352 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNS 442 E+VK ERL L + N A GQ++EVL+E + KL GR+ + V Sbjct: 353 EDVKKERLDRLMRLQDSISAKKNKALKGQVVEVLVEGPSRNNPEKLTGRTRTNKVVNFEG 412 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG +++VRIT+ +L GE++ Sbjct: 413 PADLIGKLVEVRITEPHTWSLIGEVL 438 >gi|253699420|ref|YP_003020609.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter sp. M21] gi|251774270|gb|ACT16851.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter sp. M21] Length = 441 Score = 322 bits (825), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 175/448 (39%), Positives = 268/448 (59%), Gaps = 17/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++++GCQMNV DS ++ + GY++ DADL++LNTC IR A ++VY L Sbjct: 5 KKLYLETFGCQMNVSDSEKIVTLMKGMGYQQTQDPVDADLVLLNTCSIRATAEQRVYGHL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G+ +++K + L++ V GCVAQ EGE++L+++P VN+V G + L ++ A Sbjct: 65 GKFKSIKKGKP----GLIIGVGGCVAQQEGEKLLKKAPFVNLVFGTHNLHLLQGMVAAAE 120 Query: 145 FGKRVVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GKR TD+ E +F+ + + GVT F+T+ +GCD FC +C+VP+ RG EI Sbjct: 121 QGKRSSQTDFLDDEKRFDLFPHAEA----EGGVTRFVTVMQGCDNFCAYCIVPHVRGREI 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SRS +VV+E R L GV E+TLLGQNVN++ K GE F DLL ++++ G+ R+ Sbjct: 177 SRSAVKVVEEVRALAGGGVTEVTLLGQNVNSYCSK-QPGEP-DFPDLLRLVAQVDGIERI 234 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP+DMS LI+ DL L P++HLP QSGSDR+L+ MNR +TA +Y + ++ Sbjct: 235 RFTTSHPKDMSPRLIECFADLPKLAPHIHLPAQSGSDRVLERMNRGYTAQQYLAKVAALK 294 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P I + D IVGFPGE + F+ TM L++++ YA FSF YS R PG+ E D Sbjct: 295 EACPAIQFTGDMIVGFPGEDEAAFQETMALMEEVRYADLFSFIYSAR---PGTKAAEYAD 351 Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 + +AE RL LQ ++ ++ N + G + +VL+E L GR+ + V+ Sbjct: 352 DATRAEKQGRLERLQAAQKKTTLARNRSLEGTVQKVLVEGLSSTGDSLFGRTGGNRGTVM 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 G ++ V+I + + L GE+V Sbjct: 412 AGDPSLAGRVLDVKIVEGLQTLLKGEIV 439 >gi|150017413|ref|YP_001309667.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium beijerinckii NCIMB 8052] gi|229890483|sp|A6LWI1|MIAB_CLOB8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|149903878|gb|ABR34711.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium beijerinckii NCIMB 8052] Length = 455 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 177/449 (39%), Positives = 267/449 (59%), Gaps = 23/449 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF+++YGCQMN DS ++ M GYE + D+A +I+ NTC +RE A KV+ LG Sbjct: 20 FFIQTYGCQMNEEDSEKLSGMLKRMGYENTENRDEASIIIFNTCCVRENAENKVFGNLGA 79 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ K ++ DL++ + GC+ Q +G ++IL+R P VN++ G Y+ PE L R + Sbjct: 80 LKKQK----EKNPDLVIGICGCMMQQKGMADDILKRFPYVNIIFGTHNSYKFPEYLNRVK 135 Query: 145 FG----KRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 K ++D + IV+G +RK + F+TI GC+ FCT+C+VPY R Sbjct: 136 TEGVQIKEIIDKE---------TEIVEGIPIDRKSDIKGFVTIMYGCNNFCTYCIVPYVR 186 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR +V+E + ++ G E+TLLGQNVN++ GKGL+ E TF+DLL ++EI+G Sbjct: 187 GRERSRKPEDIVNEIKDMVTRGYKEVTLLGQNVNSY-GKGLE-ENITFADLLRKVNEIEG 244 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+ TSHP+D++ ++ A D D + +HLPVQSGSDRILK MNR +T +Y + Sbjct: 245 LERIRFMTSHPKDLTLDVVYAIRDCDKVCEQIHLPVQSGSDRILKEMNRHYTKEQYITLA 304 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +IR+ PD+ S+D IVGFPGET++DF T++L ++ Y AF+F YS R TP M Sbjct: 305 KKIRAEIPDVTFSTDIIVGFPGETEEDFSETLELAKEVRYDAAFTFIYSRRNHTPADKME 364 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 Q+ + +K ER L + + N G+I EVL+E + K ++ KL GR+ + V Sbjct: 365 NQIPDEIKHERFNRLVEIVNTGIAKGNKDAEGKIYEVLVEGYSKNDEAKLTGRTRNGRLV 424 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467 IG ++ V+I +L GE+ Sbjct: 425 NFEGGEDLIGKLVNVKIIKANSFSLIGEV 453 >gi|229031402|ref|ZP_04187403.1| hypothetical protein bcere0028_34560 [Bacillus cereus AH1271] gi|228729897|gb|EEL80876.1| hypothetical protein bcere0028_34560 [Bacillus cereus AH1271] Length = 509 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 180/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDFEYGLGDLMDELRKVD-IA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ ++D IVGFP ET++ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPNAVFTTDIIVGFPNETNEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + N+ GQI+EVL++ K + L G + + V Sbjct: 415 VPMEVKKERLQRLNTLVNTLAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV++T+ K +L GELV Sbjct: 475 VASKSLIGQLVKVKVTEAKTWSLNGELV 502 >gi|310658531|ref|YP_003936252.1| isopentenyl-adenosine a37 tRNA methylthiolase [Clostridium sticklandii DSM 519] gi|308825309|emb|CBH21347.1| isopentenyl-adenosine A37 tRNA methylthiolase [Clostridium sticklandii] Length = 477 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 178/447 (39%), Positives = 280/447 (62%), Gaps = 18/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q +F++++GCQMN +DS + MF + +SM++AD+I+ NTC +RE A KVY Sbjct: 39 QSYFIQTFGCQMNEHDSENLAGMFDMMNIDLADSMEEADIIIFNTCAVRENAELKVY--- 95 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G + LK ++K DL++ V GC+ Q + +EI +R P V++V G Y+ PELL + Sbjct: 96 GNLHALKKLKVK-NPDLIIAVCGCMMQQDHVVDEIKKRFPHVSLVFGTHNLYKFPELLLK 154 Query: 143 ARFG--KRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G K ++D + ++ ++++G R+ + AF+ I GC+ FCT+C+VPYTR Sbjct: 155 YLSGDSKTLIDV-WDIDG-----NVIEGLPSARRYDLKAFVNIMYGCNNFCTYCIVPYTR 208 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR+ V++E + L NGV EITLLGQNVN++ G D K +F+ LL L++I+G Sbjct: 209 GRERSRNPEDVINEVKDLARNGVKEITLLGQNVNSY-GNDFDN-KVSFAKLLTMLNDIQG 266 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+ TSHP+D+S+ LI A +LD + +HLPVQSGS +LK MNR +T +Y ++I Sbjct: 267 IERIRFMTSHPKDISEELIDAVANLDKVCESIHLPVQSGSTAVLKKMNRHYTKDQYIELI 326 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++I++ P++A+++D +VGFPGET++DF T+D+++K+ Y AF F YS R GT NM Sbjct: 327 NKIKTKVPNVALTTDIMVGFPGETEEDFLDTLDVLEKVQYDSAFMFIYSVRKGTVAENMD 386 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438 +DE+VK +R L K E N + +I+EVL+E K+K +L+GR+ + V Sbjct: 387 NHIDESVKKDRFNRLLSKANEIAELKNSKYMDEIVEVLVEGFSKKDKTRLMGRTRQNKLV 446 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465 IG ++ V++T+ K +L G Sbjct: 447 NFIGDESMIGSLVNVKVTETKSFSLNG 473 >gi|260887308|ref|ZP_05898571.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sputigena ATCC 35185] gi|330838938|ref|YP_004413518.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC 35185] gi|260862944|gb|EEX77444.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sputigena ATCC 35185] gi|329746702|gb|AEC00059.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC 35185] Length = 444 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 184/448 (41%), Positives = 265/448 (59%), Gaps = 18/448 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R F+ YGCQMN+ D+ RME + GYER M ADLI+LNTC +RE A +KVY + Sbjct: 9 KRAFIGVYGCQMNISDAERMEGQLATLGYERTEDMARADLILLNTCCVRETAEDKVYGKI 68 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---LE 141 G I+++K + L+ + GC+AQ EGE ++RR+P ++ V+G + L LE Sbjct: 69 GEIKHIKRANPA----LIFGITGCMAQKEGEALIRRAPHIDFVLGTNKVHELKATVRQLE 124 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 AR G VVD E + I R ++A++ I GC+ FCT+C+VPY RG Sbjct: 125 SARRGP-VVDVLLGDAPLPENVPI-----ERTGRLSAWVPIMYGCNNFCTYCIVPYVRGR 178 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR VV E + G EITLLGQNVN++ G D + +F++LL + +KG+ Sbjct: 179 EHSRRPEDVVREVEEAAAQGFKEITLLGQNVNSY---GRDHKLASFAELLLMVDAVKGVE 235 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RY TSHP+D+SD +I A + P+ HLPVQ GSDRIL++MNR + YR +++R Sbjct: 236 RVRYMTSHPKDLSDAVIDAVRQGRHICPHFHLPVQHGSDRILRAMNRVYRKDAYRSLVER 295 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ PD ++++D IVGFPGET++DF +D + +I Y A++F YS R GTP + M Q Sbjct: 296 IRAAVPDASLTTDLIVGFPGETEEDFGELLDFLREIRYDAAYTFLYSKRSGTPAATMEAQ 355 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 V+++VK ERL L + E + N A G + EVL E + ++ GR+ + V+ Sbjct: 356 VEDSVKKERLHRLMEVQNEISLEKNAALKGTVQEVLAEGPSRTDEDVWTGRTGTNKIVLW 415 Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGEL 467 K GDI++VRIT + L GEL Sbjct: 416 RKKGQETEGDIVRVRITQPQTWVLKGEL 443 >gi|118443818|ref|YP_878177.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium novyi NT] gi|229890490|sp|A0Q0M5|MIAB_CLONN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|118134274|gb|ABK61318.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium novyi NT] Length = 452 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 173/452 (38%), Positives = 278/452 (61%), Gaps = 17/452 (3%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 I +RFF+ ++GCQMN DS ++ + GY R + D+AD+++ NTC +RE A +KVY Sbjct: 13 IYNKRFFISTWGCQMNEEDSEKISGLLKGIGYTRTDIRDEADVVIFNTCCVRENAEQKVY 72 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPEL 139 LG ++ LK ++ +L+++V GC+ Q +G E+++ + P V+++ G Y+LPE Sbjct: 73 GHLGELKALK----RKNPNLILIVTGCMMQQKGMPEKVMEKFPHVDIIAGTYNSYKLPEY 128 Query: 140 LERARF-GKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 +ER + G +++ + DK IV+G +RK + AF+TI GC+ FC++C+VPY Sbjct: 129 IERVKTEGNSIIE----IWDK--EKGIVEGLPVDRKSDIKAFVTIMYGCNNFCSYCIVPY 182 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG E SR ++DE + L+ G EITLLGQNVN++ GKGL+ E F+ LL +++I Sbjct: 183 VRGRERSRDPQNIIDEIKDLVSKGYKEITLLGQNVNSY-GKGLEPE-INFATLLRMVNKI 240 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 GL R+R+ TSHP+D+SD LIKA + + + H +QSGS IL+ MNR++T +Y Sbjct: 241 DGLERIRFMTSHPKDVSDELIKAMAECEKVCEQGHFALQSGSTEILQKMNRKYTREDYLT 300 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++ ++R P++ IS+D I+G+PGET+ DF T+ +V +I + AF+F YS R GTP + Sbjct: 301 LVKKLRKAMPNVGISTDIIIGYPGETEKDFEDTLSIVKEIEFDSAFTFIYSKREGTPAAK 360 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQ 436 + +QV E+VK R L + + E N G+ +EVL+E K + KL+GR+ + Sbjct: 361 LEDQVPEDVKHTRFNKLVEAVNEIMARKNKEFEGKTVEVLVEGPSKNDDTKLMGRTRSGK 420 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V N +G ++ ++IT +L GE++ Sbjct: 421 LVNFNGCLDQVGKLVNIKITKANSFSLTGEII 452 >gi|296330914|ref|ZP_06873389.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674432|ref|YP_003866104.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151919|gb|EFG92793.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412676|gb|ADM37795.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus subtilis subsp. spizizenii str. W23] Length = 509 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 178/448 (39%), Positives = 262/448 (58%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE NS+DDA++I+LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK K DL++ V GC++Q E IL++ P V+++ G +RLPELL Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V G + ++ I GCDKFCT+C+VPYTRG Sbjct: 182 AYLSKEMVIEVWSKEGDVIENLPKVRNG-----KIKGWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++ E R+L G EITLLGQNVNA+ GK + DL+ L +I + Sbjct: 237 ERSRRPEEIIQEVRRLASEGYKEITLLGQNVNAY-GKDFEDMTYGLGDLMDELRKI-DIP 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS +LK M R++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDRLIEVLAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ P+ ++++D IVGFP ETD+ F T+ L ++ + A++F YSPR GTP + M + Sbjct: 355 IKAAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + E G+++EVL+E K L G + + V Sbjct: 415 VPMRVKKERLQRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG I++V+I K +L GE+V Sbjct: 475 KGPKEAIGKIVRVKIQQAKTWSLDGEMV 502 >gi|149183373|ref|ZP_01861809.1| YmcB [Bacillus sp. SG-1] gi|148848916|gb|EDL63130.1| YmcB [Bacillus sp. SG-1] Length = 521 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 177/448 (39%), Positives = 269/448 (60%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE ++ DDAD+I+LNTC IRE A KV+ L Sbjct: 67 KKFYIRTYGCQMNEHDTEVMAGIFMALGYEATDNTDDADVILLNTCAIRENAENKVFGEL 126 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK +E +LL+ V GC++Q E +IL+ V+++ G +RLP +L Sbjct: 127 GHLKHLK----REKPELLIGVCGCMSQEESVVNKILKTYHQVDMIFGTHNIHRLPNILNE 182 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 183 AYMSKAMVVEVWSKEGDVIENLPKV-----RRGNIKAWVNIMYGCDKFCTYCIVPYTRGK 237 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++ E R L G E+TLLGQNVNA+ D E DL+ L +I + Sbjct: 238 ERSRRPEEIIQEVRHLAAQGYQEVTLLGQNVNAYGKDIEDLENYGLGDLMDELRKID-IP 296 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS +LK M R++T + +++ + Sbjct: 297 RIRFTTSHPRDFDDHLIEVLAKKGNLVEHIHLPVQSGSSAVLKIMARKYTRERFLELVGK 356 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ P +A+++D IVG+P ET++ F T+ L ++G+ AF++ YSPR GTP + M + Sbjct: 357 IKAAMPGVALTTDIIVGYPNETEEQFEETLSLYREVGFESAFTYIYSPREGTPAAKMNDN 416 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + E G+I+EVL+E K+ + L G + + V Sbjct: 417 VPMEVKKERLQRLNQLVNEYSGEALKQYEGKIVEVLVEGESKKNPEILAGYTRRSKLVNF 476 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG I+KV+ITD K +L GE++ Sbjct: 477 KAPKTAIGKIVKVKITDTKSWSLNGEMI 504 >gi|261419508|ref|YP_003253190.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus sp. Y412MC61] gi|319766323|ref|YP_004131824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52] gi|261375965|gb|ACX78708.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC61] gi|317111189|gb|ADU93681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52] Length = 531 Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 267/448 (59%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE + ++A++I+LNTC IRE A KV+ L Sbjct: 80 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGEL 139 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DLL+ V GC++Q E ++IL++ V+++ G +RLP +L Sbjct: 140 GYLKPLKTT----NPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHE 195 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V RK + A++ I GCDKFCT+C+VPYTRG Sbjct: 196 AYMSKEMVVEVWSKEGDVVENLPKV-----RKGKIKAWVNIMYGCDKFCTYCIVPYTRGK 250 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R+L G EITLLGQNVNA+ GK + + DL+ L +I + Sbjct: 251 ERSRRPEDIIQEVRQLAAQGYKEITLLGQNVNAY-GKDFTDIQYSLGDLMDELRKI-DIA 308 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS ILK M R++T EY +++ + Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRK 368 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ PD+A+++D IVGFP ETD+ F T+ L ++ + A++F YSPR GTP +NM + Sbjct: 369 IKAAIPDVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDN 428 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L ++E GQ++EVL+E K L G + + V Sbjct: 429 VPMEVKKERLKRLNDLVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHF 488 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ VRIT K TL GELV Sbjct: 489 VGPKSLIGQLVNVRITQAKTWTLTGELV 516 >gi|261407895|ref|YP_003244136.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Paenibacillus sp. Y412MC10] gi|261284358|gb|ACX66329.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. Y412MC10] Length = 519 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 176/447 (39%), Positives = 263/447 (58%), Gaps = 14/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + V +YGCQMN +DS ++ + GY AD+I+LNTC IRE A +KV+ L Sbjct: 74 KHYIVYTYGCQMNEHDSETIKGLLEQMGYRATEDRKQADIILLNTCAIRENAEDKVFGEL 133 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK E D+L+ V GC++Q E IL++ V+++ G +RLP L++ Sbjct: 134 GHLKHLKT----EKPDMLLGVCGCMSQEESVVNRILQKHGFVDLIFGTHNVHRLPHLIQE 189 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A F K +V +S E IV+ ++ G+ ++ I GCDKFCT+C+VPYTRG E Sbjct: 190 ALFSKEMVVEVWSKEG-----DIVENLPKKREGLRGWVNIMYGCDKFCTYCIVPYTRGKE 244 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR V+ E R+L G EITLLGQNVNA+ GK + + F DL+ + +I + R Sbjct: 245 RSRRPEDVIAEVRELARQGYKEITLLGQNVNAY-GKDFEDIQYRFGDLMDDIHKID-IPR 302 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHPRD D LI+ L+ ++HLPVQSGS ++LK M+R++T Y ++ +I Sbjct: 303 VRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSSQVLKKMSRKYTRETYLELAHKI 362 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + P++A ++D IVGFPGETD+ F T+ LV ++GY A++F YSPR GTP + M + V Sbjct: 363 KKAIPNVAFTTDIIVGFPGETDEQFEETLSLVREVGYDSAYTFIYSPREGTPAAVMEDNV 422 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441 VK+ERL L + E ND +G +EVL+E K ++ GR+ + V Sbjct: 423 PMEVKSERLQRLNAAINEYSRKSNDRLLGSTVEVLVEGVSKNNDSMLSGRTRTNKLVHFE 482 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G + VRITD K + G+++ Sbjct: 483 GSTELVGSFVNVRITDTKTWYIKGDMI 509 >gi|291484256|dbj|BAI85331.1| hypothetical protein BSNT_02749 [Bacillus subtilis subsp. natto BEST195] Length = 509 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 178/448 (39%), Positives = 261/448 (58%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE NS+DDA++I+LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK K DL++ V GC++Q E IL++ P V+++ G +RLPELL Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V G + ++ I GCDKFCT+C+VPYTRG Sbjct: 182 AYLSKEMVVEVWSKEGDVIENLPKVRNG-----KIKGWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R+L G EITLLGQNVNA+ GK + DL+ L +I + Sbjct: 237 ERSRRPEDIIQEVRRLASEGYKEITLLGQNVNAY-GKDFEDMTYGLGDLMDELRKI-DIP 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS +LK M R++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDRLIEVLAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ P+ ++++D IVGFP ETD+ F T+ L ++ + A++F YSPR GTP + M + Sbjct: 355 IKTAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + E G+++EVL+E K L G + + V Sbjct: 415 VPMRVKKERLQRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG I++V+I K +L GE+V Sbjct: 475 KGPKEAIGKIVRVKIQQAKTWSLDGEMV 502 >gi|307243249|ref|ZP_07525420.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptostreptococcus stomatis DSM 17678] gi|306493377|gb|EFM65359.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptostreptococcus stomatis DSM 17678] Length = 479 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 178/450 (39%), Positives = 279/450 (62%), Gaps = 16/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +F ++GCQMN +DS + +M + GY + S D ADL++ NTC +RE A KVY L Sbjct: 39 KSYFCTTFGCQMNEHDSEMLINMLEAMGYVQALSEDQADLVIYNTCAVRENAELKVYGNL 98 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++++K R D+ +VV GC+ Q EEI ++ V+++ G Y+ PELLE Sbjct: 99 GHLKSIKKKR----PDMKIVVCGCMMQQPHVVEEIKKKYRHVDLIFGTHNLYKFPELLES 154 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +++ + V+ + +V+G NRK + AF+ I GC+ FCT+C+VPYTRG Sbjct: 155 TFNRDKIIVDVWDVDGE-----VVEGLKSNRKFEIKAFVNIMYGCNNFCTYCIVPYTRGR 209 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGL 260 E SR ++DE R L+ +G E+TLLGQNVN++ GK L D +K +F+ LL +++I GL Sbjct: 210 ERSRKPGDIIDEIRSLVKDGTKEVTLLGQNVNSY-GKTLEDDQKISFAQLLREVNKIDGL 268 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHP+D+SD +I A D D + +LHLP Q+GS +LK MNR +T +Y +II+ Sbjct: 269 ERIRFMTSHPKDISDDVIYAMRDCDKVCEFLHLPFQAGSTSLLKKMNRHYTKEDYLKIIE 328 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + + P++A S+D ++GFPGETD D T+D+ +++ Y AF+F YS R GTP + ML+ Sbjct: 329 KAKREIPNLAFSTDIMIGFPGETDQDVDDTIDICEQVRYDSAFTFIYSKRRGTPAAKMLD 388 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVV 439 QV ++VK +R + + + N +G+ +EVL+E K+ + L G+S ++V Sbjct: 389 QVPDDVKHQRFERVLEVVNRISGEKNANYLGKTLEVLVEGASKKNEAVLTGKSRHNKTVN 448 Query: 440 LNSKNHN-IGDIIKVRITDVKISTLYGELV 468 + + IG +++V+ITD K +L GELV Sbjct: 449 FTGGDKSMIGKLVQVKITDPKSFSLNGELV 478 >gi|168186342|ref|ZP_02620977.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum C str. Eklund] gi|169295705|gb|EDS77838.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum C str. Eklund] Length = 447 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 171/449 (38%), Positives = 278/449 (61%), Gaps = 17/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +RFF+ ++GCQMN DS ++ + GY R + D+AD+++ NTC +RE A +KVY L Sbjct: 11 KRFFISTWGCQMNEEDSEKISGLLKGIGYTRTDIRDEADVVIFNTCCVRENAEQKVYGHL 70 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK ++ +L+++V GC+ Q +G E+++ + P V+++ G Y+LPE +ER Sbjct: 71 GELKALK----RKNPNLILIVTGCMMQQKGMPEKVMEKFPHVDIIAGTYNSYKLPEYIER 126 Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + G +++ + DK IV+G +RK + AF+TI GC+ FC++C+VPY RG Sbjct: 127 VKTEGNSIIE----IWDK--EKGIVEGLPVDRKSDIKAFVTIMYGCNNFCSYCIVPYVRG 180 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR ++DE + L+ G EITLLGQNVN++ GKGL+ E +F+DLL +++I GL Sbjct: 181 RERSRDPKNIIDEIKDLVSKGYKEITLLGQNVNSY-GKGLEPE-ISFADLLRMVNKIDGL 238 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHP+D+SD LI+A + D + H +QSGS +L+ MNR++T +Y ++ Sbjct: 239 ERIRFMTSHPKDVSDELIEAMAECDKVCEQGHFALQSGSTEVLEKMNRKYTREDYLTLVK 298 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R P++ IS+D I+G+PGET+ DF T+ +V +I + AF+F YS R GTP + + + Sbjct: 299 KLRKTMPNVGISTDIIIGYPGETEKDFEDTLSIVKEIEFDSAFTFIYSKREGTPAAKLED 358 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 QV E+VK R L + + E N + +EVL+E K + KL+GR+ + V Sbjct: 359 QVPEDVKHTRFNKLVEAVNEIMARKNKDFEEKTVEVLVEGPSKNDDTKLMGRTRSGKLVN 418 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 N +G ++ ++IT +L GE++ Sbjct: 419 FNGCLDQVGKLVNIKITKANSFSLTGEII 447 >gi|260892471|ref|YP_003238568.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4] gi|260864612|gb|ACX51718.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4] Length = 447 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 185/448 (41%), Positives = 270/448 (60%), Gaps = 21/448 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++++ +YGCQMN +DS M + GY R S ++ADLI+LNTC +RE A KV+ LG Sbjct: 9 KYYIFTYGCQMNEWDSEVMAGLVEEMGYTRAGSPEEADLILLNTCCVRESAENKVWGLLG 68 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGE--EILRRSPIVNVVVGPQTYYRLPELLERA 143 + LK R LL+ V GC+ Q G EI RR P V+++VG + LP L+ A Sbjct: 69 SLGRLKQRRPW----LLLGVTGCLPQRPGAAAEIKRRFPFVDLIVGTYNRHELPRLILEA 124 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+ VV ++ E L I R+ + A++ I GC+ FCT+C+VPY RG E Sbjct: 125 ERGQ-VVAVSPEEQEIVEGLPI-----RRESRLRAWVPIMFGCNNFCTYCIVPYVRGKER 178 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E ++L G EI LLGQNVNA+ GKGL TF+DLL L+ ++G+ R+ Sbjct: 179 SRRPEDILREVKELAKEGYREIFLLGQNVNAY-GKGLQ-PPVTFADLLRQLNAVEGIWRI 236 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPRD + LI+A +L + HLPVQ+GSD+IL+ M R +T +Y ++ RIR Sbjct: 237 RYTTSHPRDFGEDLIRAVAELPKVCENFHLPVQAGSDKILRRMGRGYTRQDYLNLVRRIR 296 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 V P + S+D +VGFPGET++DF T+ LV ++G+ QAF F Y+PR GTP ++ +QV Sbjct: 297 EVLPQASFSTDIMVGFPGETEEDFEQTLLLVREVGFDQAFIFIYNPRPGTPAASFPDQVP 356 Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 VK E RLL LQ+ + ++ N A VG++ EVL+E + +L GR+ ++V+ Sbjct: 357 HEVKVERIKRLLALQQAISRER---NRAEVGKVHEVLVEGPSRTNPDRLEGRTRTYKTVI 413 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467 L+ G ++ VRIT ++ L G++ Sbjct: 414 LDGTPELTGKLVAVRITAGYLTHLEGKV 441 >gi|319649479|ref|ZP_08003635.1| YmcB protein [Bacillus sp. 2_A_57_CT2] gi|317398641|gb|EFV79323.1| YmcB protein [Bacillus sp. 2_A_57_CT2] Length = 515 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 177/448 (39%), Positives = 265/448 (59%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F GYE S++DA++I+LNTC IRE A KV+ L Sbjct: 69 RKFYIRTYGCQMNEHDTEVMAGIFLGLGYEHTESVEDANVILLNTCAIRENAENKVFGEL 128 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK KE DLL+ V GC++Q E +IL+ V+++ G +RLP +L+ Sbjct: 129 GHLKHLK----KENPDLLIGVCGCMSQEESVVNKILKTYNQVDMIFGTHNIHRLPNILQE 184 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 185 AYMSKEMVIEVWSKEGDVIENLPKV-----RRGNIKAWVNIMYGCDKFCTYCIVPYTRGK 239 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R+L G EITLLGQNVNA+ GK + DL+ + +I + Sbjct: 240 ERSRRPEDIIQEVRQLAAQGYQEITLLGQNVNAY-GKDFEDMNYGLGDLMDEMRKID-IP 297 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS +LK M R++T +Y +++ + Sbjct: 298 RVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTDVLKIMARKYTREQYLELVRK 357 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ P+ ++D IVG+P ET++ F T+ L ++G+ A++F YSPR GTP + M++ Sbjct: 358 IKAAIPEATFTTDIIVGYPNETEEQFEETISLYREVGFEAAYTFIYSPREGTPAAKMVDN 417 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + E GQ +EVL+E K + L G + + V Sbjct: 418 VPMEVKKERLQRLNAVVNELSAEAMKKYKGQTVEVLVEGESKNNPEILAGYTRKNKLVNF 477 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG I+ V++TD K +L GE+V Sbjct: 478 KGPKTAIGKIVNVKVTDAKTWSLNGEMV 505 >gi|170759550|ref|YP_001787122.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A3 str. Loch Maree] gi|229890489|sp|B1KSA4|MIAB_CLOBM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|169406539|gb|ACA54950.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A3 str. Loch Maree] Length = 450 Score = 320 bits (819), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 177/443 (39%), Positives = 265/443 (59%), Gaps = 13/443 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF++++GCQMN DS ++ M +GY R ++AD+I+ NTC +RE A KVY LG Sbjct: 16 FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAELKVYGNLGI 75 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ LK+ + +L++ V GC+ Q +G E I ++ P V++++G + P L + Sbjct: 76 LKGLKS----KNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + ED I + +RK + AF+TI GC+ FCT+C+VPY RG E S Sbjct: 132 KKDTSILKIQEKEDSI----IENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGRERS 187 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+ + DE +KLI G EITLLGQNVN++ GK L+ K TF+DLL ++ I GL R+R Sbjct: 188 RTPENIEDEIKKLISEGYKEITLLGQNVNSY-GKDLE-PKVTFADLLERVNTIDGLERVR 245 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D++D +I+A D L +HLPVQSGS ILK MNR + +Y ++ +I+ Sbjct: 246 FMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIKK 305 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P++A+S+D IVGFPGET+ DF T+ LV ++ Y AF+F YS R GTP + +QV E Sbjct: 306 LIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVPE 365 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443 +VK +R L + + E N A G+I EVL+E K ++ KL+GR+ + V Sbjct: 366 DVKHKRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIGD 425 Query: 444 NHNIGDIIKVRITDVKISTLYGE 466 +IG ++ V+I +L GE Sbjct: 426 KDSIGKLVNVKIIKANSFSLTGE 448 >gi|321315467|ref|YP_004207754.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus subtilis BSn5] gi|320021741|gb|ADV96727.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus subtilis BSn5] Length = 509 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 178/448 (39%), Positives = 260/448 (58%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE NS+DDA++I+LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK K DL++ V GC++Q E IL++ P V+++ G +RLPELL Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V G + ++ I GCDKFCT+C+VPYTRG Sbjct: 182 AYLSKEMVVEVWSKEGDVIENLPKVRNG-----KIKGWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R+L G EITLLGQNVNA+ GK + DL+ L +I + Sbjct: 237 ERSRRPEDIIQEVRRLASEGYKEITLLGQNVNAY-GKDFEDMTYGLGDLMDELRKI-DIP 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS +LK M R++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDRLIEVLAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ ++++D IVGFP ETD+ F T+ L ++ + A++F YSPR GTP + M + Sbjct: 355 IKEAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + E G+++EVL+E K L G + + V Sbjct: 415 VPMRVKKERLQRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG I++V+I K +L GE+V Sbjct: 475 KGPKEAIGKIVRVKIQQAKTWSLDGEMV 502 >gi|16078764|ref|NP_389583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus subtilis subsp. subtilis str. 168] gi|221309576|ref|ZP_03591423.1| hypothetical protein Bsubs1_09356 [Bacillus subtilis subsp. subtilis str. 168] gi|221313900|ref|ZP_03595705.1| hypothetical protein BsubsN3_09287 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318823|ref|ZP_03600117.1| hypothetical protein BsubsJ_09216 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323095|ref|ZP_03604389.1| hypothetical protein BsubsS_09327 [Bacillus subtilis subsp. subtilis str. SMY] gi|6226482|sp|O31778|MIAB_BACSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|2634073|emb|CAB13574.1| putative conserved AdoMet radical enzyme for tRNA modification [Bacillus subtilis subsp. subtilis str. 168] Length = 509 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 178/448 (39%), Positives = 260/448 (58%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE NS+DDA++I+LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK K DL++ V GC++Q E IL++ P V+++ G +RLPELL Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V G + ++ I GCDKFCT+C+VPYTRG Sbjct: 182 AYLSKEMVVEVWSKEGDVIENLPKVRNG-----KIKGWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R+L G EITLLGQNVNA+ GK + DL+ L +I + Sbjct: 237 ERSRRPEDIIQEVRRLASEGYKEITLLGQNVNAY-GKDFEDMTYGLGDLMDELRKI-DIP 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS +LK M R++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDRLIEVLAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ ++++D IVGFP ETD+ F T+ L ++ + A++F YSPR GTP + M + Sbjct: 355 IKEAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + E G+++EVL+E K L G + + V Sbjct: 415 VPMRVKKERLQRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG I++V+I K +L GE+V Sbjct: 475 KGPKEAIGKIVRVKIQQAKTWSLDGEMV 502 >gi|75760978|ref|ZP_00740984.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491542|gb|EAO54752.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 515 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 179/445 (40%), Positives = 267/445 (60%), Gaps = 15/445 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 81 RKFYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 140 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 141 GHLKSLK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 196 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 197 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 251 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 252 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDVEYGLGDLMDELRKVD-IA 309 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 310 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRK 369 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ PD +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 370 IKEAIPDAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 429 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + N GQI+EVL++ K + L G + + V Sbjct: 430 VPMEVKKERLQRLNTLVNTLAIEKNSRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNF 489 Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465 + IG ++KV++T+ K+ L G Sbjct: 490 VASKSLIGQLVKVKVTEAKLGLLTG 514 >gi|225872143|ref|YP_002753598.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidobacterium capsulatum ATCC 51196] gi|225791726|gb|ACO31816.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidobacterium capsulatum ATCC 51196] Length = 448 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 173/445 (38%), Positives = 270/445 (60%), Gaps = 15/445 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F+++++GCQMNV+DS ++ QGY +V ADLI+ NTC IR+KA +KV++ L Sbjct: 15 FYLETFGCQMNVHDSEKVIGTLQQQGYTQVEEEAAADLILYNTCSIRDKAEQKVFNRLND 74 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + L + G V GCVAQ EGE+I R+P V++V G +Y +LPE+L + G Sbjct: 75 YKKLHAQGKRFG------VLGCVAQQEGEKIFERAPYVSLVSGSASYRKLPEMLVQLEAG 128 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + ++D+ + R ++TI EGCDKFC +CVVPYTRG E SR Sbjct: 129 ASRIT---GLDDRQTEETFETEFTARSNAHRGYITIIEGCDKFCAYCVVPYTRGKERSRK 185 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 S V+ EAR++ + G EI LLGQNVN++ +G+K +F++LL ++ E+ G+VR+R+T Sbjct: 186 SSSVLAEARRMAEAGYTEIQLLGQNVNSYHDP--EGKK-SFAELLAAVGEVPGIVRVRFT 242 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHPRD + +++A + L ++HLP+QSGS R+L+ M R +T +Y + I I++ R Sbjct: 243 TSHPRDFTRDIVEAIDAVPALCDHVHLPIQSGSSRVLQLMQREYTREQYLEKISWIKTAR 302 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 I++++D IVGFPGET DDF T+ L ++ Y F+FKYSPR TP +M + + E Sbjct: 303 RPISMTTDMIVGFPGETPDDFEETITLAAEVQYDGIFAFKYSPRPNTPAIHMSDSIPEEE 362 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 K+ RL L + RE Q VG++++V++E H +G+++GR+ +++ + Sbjct: 363 KSMRLQILLDRQREIQRINYARHVGEVMDVMVEGHNHARGQVIGRTSQNKTLNFTTSQPI 422 Query: 447 I---GDIIKVRITDVKISTLYGELV 468 + G +KVR+T ++L GE V Sbjct: 423 LPAPGSYLKVRVTRSLPNSLVGEAV 447 >gi|91202951|emb|CAJ72590.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 447 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 184/449 (40%), Positives = 274/449 (61%), Gaps = 27/449 (6%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 F +++GCQMN D+ + GY V+ +++AD+I+ NTC +R+ A +KVYS LG + Sbjct: 17 FFETFGCQMNKLDAELSLGLLQEDGYSIVDKVEEADVILYNTCSVRQHAEDKVYSHLGAL 76 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FG 146 R LK K+ D+++ V GC+AQ + + I +R P V++V G + + RLPELL + R G Sbjct: 77 RTLK----KKHPDVIIGVLGCMAQKDAQSIFKRMPHVDLVCGTRMFTRLPELLLKIRNHG 132 Query: 147 KRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 V+ D ED+ IVD Y R AF+T+ GCD +C++C+VPY RG E Sbjct: 133 NHVLAVD---EDE-----IVDVKRIAAY-RPNVYQAFVTVMRGCDNYCSYCIVPYVRGRE 183 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR+++ V E +L+ NG EITLLGQN+N++ GK L G T DLL L+ I+ L R Sbjct: 184 VSRTIADVEREVLELVSNGCREITLLGQNINSY-GKSLPG-NITLGDLLIELNGIEKLER 241 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+ TSHP+DMS LI+ LD YLH+P QSGSDRILK M+R +TA YR++I Sbjct: 242 LRFVTSHPKDMSRDLIRTMSQLDKACEYLHMPAQSGSDRILKKMHRGYTAGYYRELIQYA 301 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + P I ++ DFIVGFPGET++DF+ T+ L++ I + +F FKYS R GT + + + V Sbjct: 302 RDLMPTIKVAGDFIVGFPGETEEDFQETVCLMEDIRFQNSFIFKYSTRTGTKAAELTDDV 361 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 + +K +R LL LQKK+ ++ N +G+ ++VL+E K + KL GR+ V Sbjct: 362 PDEIKKKRNTTLLDLQKKISLEE---NKKLIGRKLQVLVEGASKSDPNKLSGRTRQNNIV 418 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467 V + +G ++ + I + TL+G + Sbjct: 419 VFKGQPALVGTLVDITINEATDLTLFGTI 447 >gi|320539647|ref|ZP_08039311.1| putative truncated isopentenyl-adenosine A37 tRNA methylthiolase [Serratia symbiotica str. Tucson] gi|320030259|gb|EFW12274.1| putative truncated isopentenyl-adenosine A37 tRNA methylthiolase [Serratia symbiotica str. Tucson] Length = 407 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 168/378 (44%), Positives = 237/378 (62%), Gaps = 10/378 (2%) Query: 95 IKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVD 151 +KE L++ V GCVA EGE I R+P V+VV GPQT +RLPE++ + G R +VD Sbjct: 2 LKEKNPALIIGVGGCVASQEGEHIRSRAPCVDVVFGPQTLHRLPEMINHVQ-GTRSPIVD 60 Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211 + +KF+RL R G AF++I EGC+K+CTFCVVPYTRG E+SR V+ Sbjct: 61 ISFPEIEKFDRLP-----EPRAEGPCAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSDDVL 115 Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271 E +L GV E+ LLGQNVNA+R DG+ CTF++LL + I G+ R+R+TTSHP Sbjct: 116 FEIAQLAAQGVREVNLLGQNVNAYRATTYDGDICTFAELLRLVGAIDGIDRIRFTTSHPI 175 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++R VRP++ Sbjct: 176 EFTDDVIAVYEDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKLRKVRPNMQF 235 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391 SSDFI+GFPGET DF T+ L+ ++ + +FSF YSPR GTP + M++ V E K +RL Sbjct: 236 SSDFIIGFPGETQADFEQTLKLIAEVNFDASFSFIYSPRPGTPAAEMIDDVSEEEKKQRL 295 Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDI 450 LQ ++ +Q + F+ +G + +L+E ++ +L GR+ + V IG Sbjct: 296 YILQDRINQQVLQFSRRMLGSVQRILVEGTSRKNVMELAGRTECNRMVNFEGSPEMIGQF 355 Query: 451 IKVRITDVKISTLYGELV 468 + V IT+V +L G +V Sbjct: 356 VDVEITEVWAHSLRGTVV 373 >gi|303241534|ref|ZP_07328035.1| RNA modification enzyme, MiaB family [Acetivibrio cellulolyticus CD2] gi|302590952|gb|EFL60699.1| RNA modification enzyme, MiaB family [Acetivibrio cellulolyticus CD2] Length = 477 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 179/448 (39%), Positives = 274/448 (61%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +RF++ ++GCQMN +DS ++ M GY MD++DLI+ NTC +RE A KVY L Sbjct: 41 KRFYLATFGCQMNEHDSEKLAGMLGEMGYSECEDMDESDLIIFNTCCVRENAELKVYGHL 100 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK ++ D+++ + GC+ Q E I + V+++ G Y+ PELL Sbjct: 101 GAMKHLK----EKNPDMIIAMCGCMMQQPEVVEHIKKVYRQVDLIFGTHNLYKFPELLFS 156 Query: 143 A-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K V+D S+ E + I RK V A++T+ GC+ FC++C+VPY RG Sbjct: 157 AINSNKTVIDIMDSIGLIAEEMPI-----ERKDEVKAWVTVMYGCNNFCSYCIVPYVRGR 211 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR + +VDE R L G+ EITLLGQNVN++ GK L G TF+ LL L+E++G+ Sbjct: 212 ERSRYIENIVDEVRMLGRQGLKEITLLGQNVNSY-GKDL-GNDTTFAKLLGELNEVEGIE 269 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D+SD LI A DL+ + +LHLP QSGS RILK MNR+++ +Y ++++ Sbjct: 270 RIRFMTSHPKDLSDELIFAMRDLNKVCEHLHLPFQSGSTRILKEMNRKYSKEDYLNLLEK 329 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 ++ P I+++SD IVGFPGET++DF+ T+D+V+K + Q +SF YS R GTP + ++Q Sbjct: 330 VKINIPGISLTSDIIVGFPGETEEDFQDTLDVVEKGRFDQIYSFLYSKRTGTPAAKSVDQ 389 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVL 440 V E VK ER L + N + + IEVL+E K K+ GR+ + V Sbjct: 390 VPEEVKKERFQRLMEVQNRISNEINHEYLDKEIEVLVEGESKTNDKIYTGRTRENKIVNF 449 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG +++V+I VK +L G+++ Sbjct: 450 DGNSEMIGKLVRVKIDTVKTWSLEGKVL 477 >gi|297530521|ref|YP_003671796.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. C56-T3] gi|297253773|gb|ADI27219.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. C56-T3] Length = 531 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 266/448 (59%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE + ++A++I+LNTC IRE A KV+ L Sbjct: 80 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGEL 139 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DLL+ V GC++Q E ++IL++ V+++ G +RLP +L Sbjct: 140 GYLKPLKTT----NPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHE 195 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V RK + A++ I GCDKFCT+C+VPYTRG Sbjct: 196 AYMSKEMVVEVWSKEGDVVENLPKV-----RKGKIKAWVNIMYGCDKFCTYCIVPYTRGK 250 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R+L G EITLLGQNVNA+ GK + DL+ L +I + Sbjct: 251 ERSRRPEDIIQEVRQLAAQGYKEITLLGQNVNAY-GKDFTDIQYGLGDLMDELRKI-DIA 308 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS ILK M R++T EY +++ + Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRK 368 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ PD+A+++D IVGFP ETD+ F T+ L ++ + A++F YSPR GTP +NM + Sbjct: 369 IKAAIPDVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDN 428 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L ++E GQ++EVL+E K L G + + V Sbjct: 429 VPMEVKKERLKRLNDLVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHF 488 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ VRIT K TL GELV Sbjct: 489 VGPKSLIGQLVNVRITQAKTWTLTGELV 516 >gi|56419838|ref|YP_147156.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus kaustophilus HTA426] gi|81347575|sp|Q5L0E8|MIAB_GEOKA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|56379680|dbj|BAD75588.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 531 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 183/448 (40%), Positives = 266/448 (59%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE + ++A++I+LNTC IRE A KV+ L Sbjct: 80 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGEL 139 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DLL+ V GC++Q E ++IL++ V+++ G +RLP +L Sbjct: 140 GYLKPLKTT----NPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHE 195 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V RK + A++ I GCDKFCT+C+VPYTRG Sbjct: 196 AYMSKEMVVEVWSKEGDVVENLPKV-----RKGKIKAWVNIMYGCDKFCTYCIVPYTRGK 250 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R+L G EITLLGQNVNA+ GK + DL+ L +I + Sbjct: 251 ERSRRPEDIIQEVRQLAAQGYKEITLLGQNVNAY-GKDFTDIQYGLGDLMDELRKI-DIA 308 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS ILK M R++T EY +++ + Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRK 368 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ PD+A+++D IVGFP ETD+ F T+ L ++ + A++F YSPR GTP +NM + Sbjct: 369 IKAAIPDVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDN 428 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L ++E GQ++EVL+E K L G + + V Sbjct: 429 VPMEVKKERLKRLNDLVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHF 488 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ VRIT K TL GELV Sbjct: 489 VGPKSLIGQLVNVRITQAKTWTLTGELV 516 >gi|296132994|ref|YP_003640241.1| RNA modification enzyme, MiaB family [Thermincola sp. JR] gi|296031572|gb|ADG82340.1| RNA modification enzyme, MiaB family [Thermincola potens JR] Length = 449 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 180/455 (39%), Positives = 278/455 (61%), Gaps = 14/455 (3%) Query: 17 IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 +V+Q Q++F++++GCQMN DS M + GYE V + +DAD+I+LNTC +RE A Sbjct: 1 MVNQNNDKQKYFLQTFGCQMNERDSETMAGLLEGMGYEPVANAEDADIIILNTCTVRETA 60 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYY 134 KV+ +G ++ LK+ + D+++ + GC+AQ + E+I R++P + ++ G + Sbjct: 61 ENKVWGRIGELKALKSKK----PDVIIGICGCMAQQKETAEKIRRKAPHIELIFGTHNIH 116 Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFC 193 LPE++ R ++ + ++ E SIV+ RK V AF++I GC+ FCT+C Sbjct: 117 ELPEMINRLVAERKPLLNVWNAEG-----SIVENLPARRKSKVKAFVSIMFGCNNFCTYC 171 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 +VPY RG E SR ++ +V E + L + G E+TLLGQNVN++ GK L EK FSDLL Sbjct: 172 IVPYVRGRERSRQIADIVREVKSLAEQGYKEVTLLGQNVNSY-GKDLP-EKTDFSDLLEV 229 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 L+EI G+ R+RY TSHPRD + LI + + + HLPVQSGS+ ILK MNR +T Sbjct: 230 LNEIDGIRRIRYMTSHPRDFTSKLIDVIARSEKVCEHFHLPVQSGSNSILKKMNRGYTRE 289 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 Y +++ IRS P +I++D IVGFPGET DF TMDL+DK+ Y AF+F Y+ R GT Sbjct: 290 YYFELVAEIRSKIPHASITTDIIVGFPGETRQDFENTMDLLDKVRYDSAFTFVYNKRSGT 349 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 P ++M +QV + K++R++ L + + + N VG+ EVL E + K+ R+ Sbjct: 350 PAASMTDQVPDEEKSKRIVELIEFQNKISLEKNLCEVGREHEVLAEGLKNSQNKVEARTR 409 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V+LN ++ IG++ +V+I L GE++ Sbjct: 410 TNKLVLLNGDSNMIGNMYRVKIVKAGPWHLDGEIL 444 >gi|222055271|ref|YP_002537633.1| RNA modification enzyme, MiaB family [Geobacter sp. FRC-32] gi|221564560|gb|ACM20532.1| RNA modification enzyme, MiaB family [Geobacter sp. FRC-32] Length = 440 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 176/444 (39%), Positives = 271/444 (61%), Gaps = 15/444 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++++GCQMNV DS ++ + + GY N ADLI+LNTC +R +A EKVY+ L + Sbjct: 7 LYLQTFGCQMNVSDSEKIAGLLKNIGYRPTNDSSLADLIILNTCSVRARAEEKVYNHLVQ 66 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + LK R K +L+ V GCVAQ EGE +L P ++ V G + LPEL+ A G Sbjct: 67 YKGLKRKRPK----ILIGVGGCVAQQEGERLLLNIPHLDFVFGTHNLHLLPELVLSAEKG 122 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +R +TD+ D L VD N GV+ F+T+ +GCD FC++C+VPY RG EISR Sbjct: 123 ERQAETDFIDNDSRLDLFPVDNSTN---GVSRFVTVMQGCDNFCSYCIVPYVRGREISRR 179 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + +++E +L GV E+TLLGQNVN++ G DGE F LL +SEI G+ RLR+T Sbjct: 180 SADILEEISQLAAKGVKEVTLLGQNVNSY-GLKSDGE-LDFVTLLRQVSEIPGIERLRFT 237 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHP+D S LI ++ L ++HLP Q+GS+ +L +MNR ++ EY +I ++++V Sbjct: 238 TSHPKDFSRQLIDCFAEMPKLCKHVHLPAQAGSNAVLSAMNRGYSREEYLSLIGQLKTVS 297 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVD 383 P I I+ D IVGFPGET+ DF+ T+ L++++ Y FSF YS R T ++ + Q + Sbjct: 298 PGIQITGDIIVGFPGETETDFQETLSLLEEVRYTDVFSFIYSKRPETKAAGYTDHISQKE 357 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + ++ +RLL +Q+K+ + N + G + EVL+E + G++ GR + V + + Sbjct: 358 KQMRLDRLLAMQRKI---TLENNRSFEGSVQEVLVEGESRRGGQIYGRISGNRIVNITAD 414 Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467 +G +++V IT + ++L GEL Sbjct: 415 PALVGQMVRVTITRGEQNSLQGEL 438 >gi|121533678|ref|ZP_01665505.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans Nor1] gi|121307669|gb|EAX48584.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans Nor1] Length = 451 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 174/446 (39%), Positives = 273/446 (61%), Gaps = 13/446 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + +YGCQMN DS R+ GY + ++ ADLI++NTC +RE A +K+Y + Sbjct: 16 RKYHIITYGCQMNENDSERLAGQLRGLGYSSTDQIEQADLILINTCCVRESAEKKIYGKI 75 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++ LK +LL+ V GC++Q + ++I ++P V++V+G ++L +L++ Sbjct: 76 GELKRLKTV----NPNLLIGVTGCLSQKDRDKIFTKAPHVDLVMGTHNVHQLTDLIKEIS 131 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + D +V D+ ERL+ D RK V+A++ I GC+ FCT+C+VPY RG E S Sbjct: 132 QSR---DRVLAVWDQAERLA-PDVPTVRKSQVSAWVPIMYGCNNFCTYCIVPYVRGRERS 187 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRL 263 R L+ ++ E R+L G EITLLGQNVN++ G DGE+ F+DLL ++ +++ + R+ Sbjct: 188 RPLADILAEVRQLGTEGFKEITLLGQNVNSY---GKDGEETIDFADLLAAVDKVETIARI 244 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY TSHPRDM+ +I + + HLPVQSGSD +L+ MNR +T YR+++++IR Sbjct: 245 RYMTSHPRDMNAKVIAVIKHGQRICEHFHLPVQSGSDIVLQRMNRGYTTEYYRKLVEKIR 304 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S P +I++D IVGFPGETD+ F T+D V I + A++F YSPR GTP + M +QV Sbjct: 305 SEIPHASITTDIIVGFPGETDELFMQTLDFVRSIRFDAAYTFLYSPRSGTPAATMPDQVP 364 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442 +K +RL L E ++ N+A +GQ +EVL+E K + K++GR+ + V+ N Sbjct: 365 LAIKKQRLQQLMAVQNEISLAINEALIGQTVEVLVEGPSKNDPDKMMGRTRTNKIVLWNR 424 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG +I VR+ + L GE+ Sbjct: 425 GKEQIGQLISVRVLKAQTWLLKGEVA 450 >gi|322806038|emb|CBZ03605.1| tRNA-i(6)A37 methylthiotransferase [Clostridium botulinum H04402 065] Length = 450 Score = 319 bits (817), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 177/443 (39%), Positives = 268/443 (60%), Gaps = 13/443 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF++++GCQMN DS ++ M +GY R +DAD+I+ NTC +RE A KVY LG Sbjct: 16 FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEEREDADVIIFNTCCVRENAELKVYGNLGI 75 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ LK+ + +L++ V GC+ Q +G E I ++ P V++++G + P L + Sbjct: 76 LKGLKS----KNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V +++K E I + +RK + AF+TI GC+ FCT+C+VPY RG E S Sbjct: 132 KKDTSV---LKIQEK-ENSIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGRERS 187 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+ + E +KLI G EITLLGQNVN++ GK L+ TF++LL ++ I+GL R+R Sbjct: 188 RTPENIEAEIKKLISEGYKEITLLGQNVNSY-GKDLEP-NVTFAELLKRVNNIEGLERVR 245 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D++D +I+A D L +HLPVQSGS ILK MNR + +Y ++ +I+ Sbjct: 246 FMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIKK 305 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P++A+S+D IVGFPGET+ DF T+ LV ++ Y AF+F YS R GTP + +QV E Sbjct: 306 LIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVPE 365 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443 +VK +R L + L E N A G+I EVL+E K ++ KL+GR+ + V Sbjct: 366 DVKHKRFNRLVEVLNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIGD 425 Query: 444 NHNIGDIIKVRITDVKISTLYGE 466 +IG+++ V+I +L GE Sbjct: 426 KDSIGELVNVKIIKANSFSLTGE 448 >gi|110803553|ref|YP_698478.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium perfringens SM101] gi|123341843|sp|Q0STS9|MIAB_CLOPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|110684054|gb|ABG87424.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens SM101] Length = 447 Score = 319 bits (817), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 175/446 (39%), Positives = 273/446 (61%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + +YGCQMN DS ++ M SQGYER + ++A +I+ NTC +RE A KV+ LG+ Sbjct: 12 FCISTYGCQMNEEDSEKLSGMLKSQGYERTENKEEASIIIFNTCCVRENAENKVFGNLGQ 71 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA- 143 ++ LK K+ +L++ + GC+ Q G +++L+ P V+++ G ++ PE L R Sbjct: 72 LKQLK----KKNPNLVIAICGCMMQQVGMADKVLKTFPYVDIIFGTHNAHKFPEYLHRVL 127 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + G +V + E E L I +RK V AF+TI GC+ FCT+C+VPY RG E Sbjct: 128 QEGVQVKEILNKEEGIVEGLPI-----DRKSDVKAFVTIMYGCNNFCTYCIVPYVRGRER 182 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E +L+ G EITLLGQNVN++ GKGL+ E F+ LL ++E+KGL R+ Sbjct: 183 SRKSEDIIKEIEELVSKGYKEITLLGQNVNSY-GKGLE-EDIDFAGLLRKVNEVKGLERV 240 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD +I A + D L +HLPVQSGS RILK MNR + Y ++ +I+ Sbjct: 241 RFMTSHPKDLSDDVIMAIKECDKLCEQVHLPVQSGSSRILKEMNRHYDREYYLDLVKKIK 300 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S PD+ +++D I+GFPGET++DF T+ L +++GY AF+F YS R TP M Q+ Sbjct: 301 SEIPDVTLTTDIIIGFPGETEEDFLDTLSLCEEVGYDSAFTFIYSRRNHTPADKMENQIP 360 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442 +++K +R L + + ++ V N G+++EVL+E K ++ KL GR+ + V Sbjct: 361 DDIKHDRFNRLVEAINKKVVIKNKEYEGKVVEVLVEGPSKNDETKLTGRTRNGKLVNFAG 420 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 +G+++ ++I + +L GE+V Sbjct: 421 DEKLVGELVNLKIVRAQPFSLIGEIV 446 >gi|18310075|ref|NP_562009.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens str. 13] gi|110800579|ref|YP_695795.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens ATCC 13124] gi|168207484|ref|ZP_02633489.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens E str. JGS1987] gi|168214970|ref|ZP_02640595.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens CPE str. F4969] gi|168218108|ref|ZP_02643733.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens NCTC 8239] gi|169342621|ref|ZP_02629366.2| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens C str. JGS1495] gi|182626330|ref|ZP_02954085.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens D str. JGS1721] gi|81767470|sp|Q8XLE9|MIAB_CLOPE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|123049876|sp|Q0TRE5|MIAB_CLOP1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|18144754|dbj|BAB80799.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|110675226|gb|ABG84213.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens ATCC 13124] gi|169299263|gb|EDS81332.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens C str. JGS1495] gi|170661180|gb|EDT13863.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens E str. JGS1987] gi|170713591|gb|EDT25773.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens CPE str. F4969] gi|177908349|gb|EDT70894.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens D str. JGS1721] gi|182379874|gb|EDT77353.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium perfringens NCTC 8239] Length = 447 Score = 319 bits (817), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 175/446 (39%), Positives = 273/446 (61%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + +YGCQMN DS ++ M SQGYER + ++A +I+ NTC +RE A KV+ LG+ Sbjct: 12 FCISTYGCQMNEEDSEKLSGMLKSQGYERTENKEEASIIIFNTCCVRENAENKVFGNLGQ 71 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA- 143 ++ LK K+ +L++ + GC+ Q G +++L+ P V+++ G ++ PE L R Sbjct: 72 LKQLK----KKNPNLVIAICGCMMQQVGMADKVLKTFPYVDIIFGTHNAHKFPEYLHRVL 127 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + G +V + E E L I +RK V AF+TI GC+ FCT+C+VPY RG E Sbjct: 128 QEGVQVKEILNKEEGIVEGLPI-----DRKSDVKAFVTIMYGCNNFCTYCIVPYVRGRER 182 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E +L+ G EITLLGQNVN++ GKGL+ E F+ LL ++E+KGL R+ Sbjct: 183 SRKSEDIIKEIEELVSQGYKEITLLGQNVNSY-GKGLE-EDIDFAGLLRKVNEVKGLERV 240 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD +I A + D L +HLPVQSGS RILK MNR + Y ++ +I+ Sbjct: 241 RFMTSHPKDLSDDVIMAIKECDKLCEQVHLPVQSGSSRILKEMNRHYDREYYLDLVKKIK 300 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S PD+ +++D I+GFPGET++DF T+ L +++GY AF+F YS R TP M Q+ Sbjct: 301 SEIPDVTLTTDIIIGFPGETEEDFLDTLSLCEEVGYDSAFTFIYSRRNHTPADKMENQIP 360 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442 +++K +R L + + ++ V N G+++EVL+E K ++ KL GR+ + V Sbjct: 361 DDIKHDRFNRLVEAINKKVVIKNKEYEGKVVEVLVEGPSKNDETKLTGRTRNGKLVNFAG 420 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 +G+++ ++I + +L GE+V Sbjct: 421 DEKLVGELVNLKIVRAQPFSLIGEIV 446 >gi|170755938|ref|YP_001781349.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum B1 str. Okra] gi|229890487|sp|B1IM69|MIAB_CLOBK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|169121150|gb|ACA44986.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum B1 str. Okra] Length = 450 Score = 318 bits (816), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 178/444 (40%), Positives = 267/444 (60%), Gaps = 15/444 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF++++GCQMN DS ++ M +GY R ++AD+I+ NTC +RE A KVY LG Sbjct: 16 FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAELKVYGNLGI 75 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ LK+ + +L++ V GC+ Q +G E I ++ P V++++G + P L + Sbjct: 76 LKGLKS----KNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131 Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 V ED SI++ +RK + AF+TI GC+ FCT+C+VPY RG E Sbjct: 132 KKDTSVLKIQEKED-----SIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGRER 186 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR+ + DE +KLI G EITLLGQNVN++ GK L+ K TF++LL ++ I GL R+ Sbjct: 187 SRTPENIEDEIKKLISEGYKEITLLGQNVNSY-GKDLEP-KVTFAELLERVNTIDGLERV 244 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D++D +I+A D L +HLPVQSGS ILK MNR + +Y ++ +I+ Sbjct: 245 RFMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIK 304 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P++A+S+D IVGFPGET+ DF T+ LV ++ Y AF+F YS R GTP + +QV Sbjct: 305 KLIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVP 364 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442 E+VK +R L + + E N A G+I EVL+E K ++ KL+GR+ + V Sbjct: 365 EDVKHKRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIG 424 Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466 +IG ++ V+I +L GE Sbjct: 425 DKDSIGKLVNVKIIKANSFSLTGE 448 >gi|329923527|ref|ZP_08279002.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. HGF5] gi|328941235|gb|EGG37532.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. HGF5] Length = 519 Score = 318 bits (816), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 176/447 (39%), Positives = 263/447 (58%), Gaps = 14/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + V +YGCQMN +DS ++ + GY AD+I+LNTC IRE A +KV+ L Sbjct: 74 KHYIVYTYGCQMNEHDSETIKGLLELMGYRATEDRKQADIILLNTCAIRENAEDKVFGEL 133 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK E D+L+ V GC++Q E IL++ V+++ G +RLP L++ Sbjct: 134 GHLKHLKT----EKPDMLLGVCGCMSQEESVVNRILQKHGFVDLIFGTHNVHRLPHLIQE 189 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A F K +V +S E IV+ ++ G+ ++ I GCDKFCT+C+VPYTRG E Sbjct: 190 ALFSKEMVVEVWSKEG-----DIVENLPKKREGLRGWVNIMYGCDKFCTYCIVPYTRGKE 244 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR V+ E R+L G EITLLGQNVNA+ GK + + F DL+ + +I + R Sbjct: 245 RSRRPEDVIAEVRELARQGYKEITLLGQNVNAY-GKDFEDIQYRFGDLMDDIHKID-IPR 302 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHPRD D LI+ L+ ++HLPVQSGS ++LK M+R++T Y ++ +I Sbjct: 303 VRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSSQVLKKMSRKYTRETYLELAHKI 362 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + P++A ++D IVGFPGETD+ F T+ LV ++GY A++F YSPR GTP + M + V Sbjct: 363 KKAIPNVAFTTDIIVGFPGETDEQFEETLSLVREVGYDSAYTFIYSPREGTPAAVMEDNV 422 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441 VK+ERL L + E ND +G +EVL+E K ++ GR+ + V Sbjct: 423 PMEVKSERLQRLNAAINEYSRKSNDRLLGSTVEVLVEGVSKNNDSMLSGRTRTNKLVHFE 482 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G + VRITD K + G+++ Sbjct: 483 GSTDLVGSFVNVRITDTKTWYIKGDMI 509 >gi|196247551|ref|ZP_03146253.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16] gi|229890686|sp|A4IMH7|MIAB_GEOTN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|196212335|gb|EDY07092.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16] Length = 523 Score = 318 bits (816), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 182/448 (40%), Positives = 264/448 (58%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE + +DA++I+LNTC IRE A KV+ L Sbjct: 80 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEL 139 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DLL+ V GC++Q E +IL++ V+++ G +RLP +L Sbjct: 140 GYLKPLKTT----NPDLLLGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHE 195 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V RK + A++ I GCDKFCT+C+VPYTRG Sbjct: 196 AYMSKEMVVEVWSKEGDVVENLPKV-----RKGNIKAWVNIMYGCDKFCTYCIVPYTRGK 250 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R+L G EITLLGQNVNA+ GK + + DL+ L +I + Sbjct: 251 ERSRRPEDIIQEVRQLAAQGYKEITLLGQNVNAY-GKDFNDIQYGLGDLMDELRKI-DIA 308 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS ILK M R++T EY +++ + Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRK 368 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ PD+A+++D IVGFP ETD+ F T+ L ++ + A++F YSPR GTP + M + Sbjct: 369 IKAAIPDVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMNDN 428 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L ++E GQ++EVL+E K L G + + V Sbjct: 429 VPMEVKKERLQRLNALVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHF 488 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ VRIT K TL GEL Sbjct: 489 VGPKSLIGQLVNVRITQAKTWTLTGELA 516 >gi|17228807|ref|NP_485355.1| hypothetical protein alr1312 [Nostoc sp. PCC 7120] gi|81772425|sp|Q8YXA3|MIAB_ANASP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|17130659|dbj|BAB73269.1| alr1312 [Nostoc sp. PCC 7120] Length = 454 Score = 318 bits (816), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 183/454 (40%), Positives = 277/454 (61%), Gaps = 23/454 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R+ + ++GCQMN DS RM + G++ ++ADLI+ NTC IR+ A +KVYS+L Sbjct: 6 RRYHITTFGCQMNKADSERMAGILEDMGFKFSEDPNNADLILYNTCTIRDNAEQKVYSYL 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + R E DL +VVAGCVAQ EGE +LRR P +++V+GPQ RL +LLE Sbjct: 66 GR----QAKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVF 121 Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +VV T+ + +ED + R VTA++ + GC++ CT+CVVP RG+E Sbjct: 122 AGNQVVATEAVHIMEDITQ--------ARRDSTVTAWVNVIYGCNERCTYCVVPNVRGVE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256 SR+ + V E +L G EITLLGQN++A+ G+ L G TF+DLLY + + Sbjct: 174 QSRTPAAVRAEMEELGRQGYKEITLLGQNIDAY-GRDLPGATPEGRHLHTFTDLLYYVHD 232 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + G+ R+R+ TSHPR ++ LIKA +L + + H+P QSG +++LK+M R +T +YR Sbjct: 233 VPGVERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNQLLKAMARGYTQEKYR 292 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +IID IR PD +IS+D IVGFPGET++ F T+ LVD IG+ Q + YSPR GTP + Sbjct: 293 RIIDTIRRYMPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAA 352 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435 Q+ E VK++RL L + + + +G+I EVL+E+ K++ +++GR+ Sbjct: 353 LWENQLSEEVKSDRLQRLNHLVNVKAAERSQRYMGRIEEVLVEEQNPKDQTQVMGRTGGN 412 Query: 436 QSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468 + H + G ++ V+I +V+ +L GE + Sbjct: 413 RLTFFKGDIHELKGQLVMVKINEVRAFSLTGEPI 446 >gi|39997296|ref|NP_953247.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter sulfurreducens PCA] gi|81701892|sp|Q74B44|MIAB_GEOSL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|39984186|gb|AAR35574.1| tRNA-i(6)A37 modification enzyme MiaB [Geobacter sulfurreducens PCA] gi|298506234|gb|ADI84957.1| tRNA-i(6)A37 modification enzyme MiaB [Geobacter sulfurreducens KN400] Length = 446 Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 180/449 (40%), Positives = 278/449 (61%), Gaps = 21/449 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +V+++GCQMNV DS ++ + +GY + + ADL++LNTC +R KA +KVY LGR Sbjct: 7 LYVETFGCQMNVNDSEKIATLLKDEGYLPTDDPERADLVILNTCSVRAKAEQKVYGHLGR 66 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + +++ K+G L+ V GCVAQ EGE +L++ P +++V G + LPE++ A G Sbjct: 67 FKGVRSR--KKG--FLLGVGGCVAQQEGERLLQKVPWLDLVFGTHNLHLLPEIVRAAERG 122 Query: 147 KRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +R + + D RL + GG GVT F+T+ +GCD FC++C+VPY RG EIS Sbjct: 123 ERRAEVGFI--DNETRLDLFPETGGEG---GVTRFVTVMQGCDNFCSYCIVPYVRGREIS 177 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R S ++DE RK + GV E+TLLGQNVN++ G +GE +F+ L+ ++E++GL R+R Sbjct: 178 RRSSDIIDEVRKSVAEGVKEVTLLGQNVNSY-GLKTEGE-LSFAGLIRRIAEVEGLERIR 235 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP+D+S LI ++ L ++HLP QSGSD +L MNR +T Y + ++ +R+ Sbjct: 236 FTTSHPKDISPELIACFAEVPKLCGHIHLPAQSGSDAVLARMNRGYTRAGYLEKVEALRA 295 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-- 382 RP I + D IVGFPGET++DF+AT+ L++++ YA FSF YSPR T + + + V Sbjct: 296 ARPGIQFTGDMIVGFPGETEEDFQATISLMEEVRYADLFSFIYSPRPETAAAGIRDTVSR 355 Query: 383 -DENVKAERLLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 ++ + +RL LQ+++ RE+ +SF VG VL+E K +L GR + V Sbjct: 356 KEKQSRLDRLQTLQQQMKRERNISF----VGTRQLVLVEGVSKRGDQLYGRIDGNRIVNF 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 + IG + +V IT ++L GE+V Sbjct: 412 AADQSLIGTMAEVTITQDYQNSLLGEIVT 440 >gi|253573611|ref|ZP_04850954.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. oral taxon 786 str. D14] gi|251847139|gb|EES75144.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. oral taxon 786 str. D14] Length = 532 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 177/449 (39%), Positives = 268/449 (59%), Gaps = 14/449 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 V + + V ++GCQMN +D+ ++ + GY AD+I+LNTC IRE A +KV+ Sbjct: 88 VGKHYIVYTFGCQMNEHDTETIKGLLEQMGYRATEDRKVADIILLNTCAIRENAEDKVFG 147 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140 LG +++LK E DLL+ V GC++Q EG + IL++ V+++ G +RLP L+ Sbjct: 148 ELGHLKSLKT----EKPDLLLGVCGCMSQEEGVVKRILQKHSFVDMIFGTHNIHRLPYLI 203 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + A F K +V +S E I++ ++ G+ A++ I GCDKFCT+C+VP+TRG Sbjct: 204 QEALFSKEMVVEVWSKEG-----DIIENLPKKREGMRAWVNIMYGCDKFCTYCIVPFTRG 258 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR V+ E R+L G EITLLGQNVNA+ GK TF++L+ + +I + Sbjct: 259 KERSRRPEDVIAEVRELARQGYKEITLLGQNVNAY-GKDFTDINYTFANLMDDIRQID-I 316 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHPRD D LI L+ ++HLPVQSGS +LK M+R++T Y +++ Sbjct: 317 PRVRFTTSHPRDFDDALIDVLAKGGNLVEHIHLPVQSGSSEVLKKMSRKYTREHYLELVR 376 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +I++ P++ +++D IVGFPGET++ F T+ LV ++GY A++F YSPR GTP + M + Sbjct: 377 KIKAKIPNVVLTTDIIVGFPGETEEQFEETLSLVREVGYDSAYTFIYSPREGTPAAVMED 436 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVV 439 V VK RL+ L L E + N+A GQI+EVL+E K ++ GR+ + V Sbjct: 437 TVPMEVKKARLMKLNDTLNEFSRNSNEALRGQIVEVLVEGESKNNAHMLSGRTRTNKLVH 496 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++V ITD + G+LV Sbjct: 497 FEGGTELIGTFVQVEITDPMTWYIKGKLV 525 >gi|269122389|ref|YP_003310566.1| RNA modification enzyme, MiaB family [Sebaldella termitidis ATCC 33386] gi|268616267|gb|ACZ10635.1| RNA modification enzyme, MiaB family [Sebaldella termitidis ATCC 33386] Length = 445 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 175/440 (39%), Positives = 268/440 (60%), Gaps = 12/440 (2%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV +S +M+ M S GY+ V+ + +DL++LNTC +RE AA KVY LG ++ L Sbjct: 16 TYGCQMNVNESAKMKKMLQSIGYKIVDDIKISDLVLLNTCTVREGAAVKVYGKLGELKKL 75 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K R ++++ V GC+AQ EE ++R+P V++V+G Q +LP+++E+ + G V Sbjct: 76 KEKR----NNMIIGVTGCLAQEVREEFIKRTPFVDLVIGNQNIAKLPDIIEKIQKG--TV 129 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D VED+ E VD + + A ++I GC+ +CTFC+VPY RG+E S + ++ Sbjct: 130 DHIVMVEDEDELPKRVDADFGDD--IVASVSITYGCNNYCTFCIVPYVRGMERSVPMREI 187 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 +D+ ++ D G EI LGQNVN++ ++ GE F+ LL + I+G L+Y + H Sbjct: 188 LDDVKQYADKGYKEILFLGQNVNSYGSDRIEMGE--DFAGLLTKAANIEGDFWLKYISPH 245 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P+D +D +IKA + + LHLP+QSGS +IL +MNR +T E+ ++ +I+ PDI Sbjct: 246 PKDFTDSVIKAIAENPKVARMLHLPLQSGSTKILGAMNRGYTKEEFIELALKIKKEIPDI 305 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 I++D IVGFPGETD+DF+ T+D+V+++G+ AF F YS R GTP + + EQV E VK E Sbjct: 306 GITTDIIVGFPGETDEDFQDTLDVVEQVGFENAFMFMYSKRSGTPAAVLEEQVPEQVKKE 365 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 RL L + + + GQ ++VL+E K L GR+ + V+ G Sbjct: 366 RLQQLMRLQNARAKEESKKYYGQTLKVLVEGPSSKNPDMLTGRTSTHKIVLFKGDEELSG 425 Query: 449 DIIKVRITDVKISTLYGELV 468 + V+I + K TLYGELV Sbjct: 426 KFVNVKIYETKTWTLYGELV 445 >gi|295399898|ref|ZP_06809879.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus thermoglucosidasius C56-YS93] gi|312111583|ref|YP_003989899.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1] gi|294978301|gb|EFG53898.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus thermoglucosidasius C56-YS93] gi|311216684|gb|ADP75288.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1] Length = 523 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 179/448 (39%), Positives = 264/448 (58%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F GYE + +DA++I+LNTC IRE A KV+ + Sbjct: 80 RKFYIRTYGCQMNEHDTEVMAGIFMELGYEPTDRPEDANVILLNTCAIRENAENKVFGEI 139 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK ++ DLL+ V GC++Q E +IL++ V+++ G +RLP +L Sbjct: 140 GHLKQLK----QDNPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPHILHE 195 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L RK + A++ I GCDKFCT+C+VPYTRG Sbjct: 196 AYMSKEMVVEVWSKEGDVIENLPKA-----RKGNIKAWVNIMYGCDKFCTYCIVPYTRGK 250 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L G E+TLLGQNVNA+ GK K DL+ L +I + Sbjct: 251 ERSRRPEDIIQEVRHLAAQGYKEVTLLGQNVNAY-GKDFTDMKYGLGDLMDELRKI-DIA 308 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS ILK M R++T EY +++ + Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKLMGRKYTREEYLELVRK 368 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ PD+A+++D IVGFP ET++ F T+ L ++ + A++F YSPR GTP + M++ Sbjct: 369 IKAAIPDVALTTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMVDN 428 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + E G+++EVL+E K L G + + V Sbjct: 429 VPMEVKKERLHRLNALVNEISARKMKEYEGKVVEVLVEGESKNNPDVLAGYTRKNKLVNF 488 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++KVRIT+ K TL GE+V Sbjct: 489 IGPKSAIGKLVKVRITEAKTWTLNGEMV 516 >gi|237795210|ref|YP_002862762.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum Ba4 str. 657] gi|229262035|gb|ACQ53068.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum Ba4 str. 657] Length = 450 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 178/446 (39%), Positives = 269/446 (60%), Gaps = 17/446 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +FF++++GCQMN DS ++ M +GY R ++AD+I+ NTC +RE A KVY LG Sbjct: 15 KFFIETWGCQMNEEDSEKLSGMLKREGYVRTEERENADVIIFNTCCVRENAELKVYGNLG 74 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143 ++ LK+ + +L++ V GC+ Q +G E I ++ P V++++G + A Sbjct: 75 ILKGLKS----KNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNF------A 124 Query: 144 RFGKRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + V D SV E+ I+ + +RK + AF+TI GC+ FCT+C+VPY RG Sbjct: 125 NYLNEVKKKDTSVLKIQEKEDIIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGR 184 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR+ + E +KLI G EITLLGQNVN++ GK L+ K TF++LL ++ I+GL Sbjct: 185 ERSRTPENIEAEIKKLISEGYKEITLLGQNVNSY-GKDLE-PKITFAELLKRVNNIEGLE 242 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D++D +I+A D L +HLPVQSGS ILK MNR + +Y ++ + Sbjct: 243 RVRFMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSK 302 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ + P++A+S+D IVGFPGET+ DF T+ LV ++ Y AF+F YS R GTP + +Q Sbjct: 303 IKKLIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQ 362 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 V E+VK R L + + E N A G+I EVL+E K ++ KL+GR+ + V Sbjct: 363 VPEDVKHNRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRAGKLVNF 422 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466 +IG ++ V+IT +L GE Sbjct: 423 IGNKESIGKLVNVKITKANSFSLTGE 448 >gi|148241703|ref|YP_001226860.1| 2-methylthioadenine synthetase [Synechococcus sp. RCC307] gi|229891031|sp|A5GRJ8|MIAB_SYNR3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|147850013|emb|CAK27507.1| 2-methylthioadenine synthetase [Synechococcus sp. RCC307] Length = 453 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 181/448 (40%), Positives = 274/448 (61%), Gaps = 22/448 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM + S GY + D ADL++ NTC IR+ A +KVYS+LGR Sbjct: 9 YWITTFGCQMNKADSERMAGILESMGYCAGSGEDQADLVLYNTCTIRDNAEQKVYSYLGR 68 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R ++ L +VVAGCVAQ EGE +LRR P +++V+GPQ RL LL + G Sbjct: 69 ----QARRKRDNPALTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDTLLSQVEAG 124 Query: 147 KRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++VV TD + +ED I R + A++ + GC++ CT+CVVP RG E S Sbjct: 125 QQVVATDDHHILED------ITTA--RRDSSLCAWVNVIYGCNERCTYCVVPSVRGQEQS 176 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIK 258 R + E L +G EITLLGQN++A+ G+ L G + T +DLL+ + ++K Sbjct: 177 RLPQAIRLEMEGLAASGYKEITLLGQNIDAY-GRDLPGITPEGRRQNTLTDLLHHVHDVK 235 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R+R+ TSHPR ++ LI+A +L + + H+P QSG D +LK+M R +T YR+I Sbjct: 236 GIERIRFATSHPRYFTERLIEACAELPKVCEHFHVPFQSGDDELLKAMARGYTTARYRRI 295 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +++IR + PD AIS+D IVGFPGETD FR T++LVD+IG+ + YSPR TP ++ Sbjct: 296 VEQIRKLMPDAAISADAIVGFPGETDAQFRRTLELVDEIGFDLLNTAAYSPRPNTPAADW 355 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQS 437 +QV+E+VK ERL L + + + + +G++ EVL E + K+ +L+GR+ + Sbjct: 356 PDQVEEHVKVERLKELNALVERKAKACSQRYLGRVEEVLAEGINPKDNTQLMGRTRTNRL 415 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYG 465 + +H +GD + VRI V+ +L G Sbjct: 416 TFFPAGSHRVGDTVPVRIEQVRAFSLSG 443 >gi|138894823|ref|YP_001125276.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus thermodenitrificans NG80-2] gi|134266336|gb|ABO66531.1| tRNA 2-methylthioadenosine synthase [Geobacillus thermodenitrificans NG80-2] Length = 580 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 182/448 (40%), Positives = 264/448 (58%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE + +DA++I+LNTC IRE A KV+ L Sbjct: 137 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEL 196 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DLL+ V GC++Q E +IL++ V+++ G +RLP +L Sbjct: 197 GYLKPLKTT----NPDLLLGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHE 252 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V RK + A++ I GCDKFCT+C+VPYTRG Sbjct: 253 AYMSKEMVVEVWSKEGDVVENLPKV-----RKGNIKAWVNIMYGCDKFCTYCIVPYTRGK 307 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R+L G EITLLGQNVNA+ GK + + DL+ L +I + Sbjct: 308 ERSRRPEDIIQEVRQLAAQGYKEITLLGQNVNAY-GKDFNDIQYGLGDLMDELRKI-DIA 365 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS ILK M R++T EY +++ + Sbjct: 366 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRK 425 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ PD+A+++D IVGFP ETD+ F T+ L ++ + A++F YSPR GTP + M + Sbjct: 426 IKAAIPDVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMNDN 485 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L ++E GQ++EVL+E K L G + + V Sbjct: 486 VPMEVKKERLQRLNALVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHF 545 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ VRIT K TL GEL Sbjct: 546 VGPKSLIGQLVNVRITQAKTWTLTGELA 573 >gi|194014848|ref|ZP_03053465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC 7061] gi|194013874|gb|EDW23439.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC 7061] Length = 508 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 177/448 (39%), Positives = 264/448 (58%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE NS +DA++I+LNTC IRE A KV+ L Sbjct: 65 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGEL 124 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK +E DL++ V GC++Q E + IL++ P V+++ G +RLPELL Sbjct: 125 GHLKALK----REKPDLILGVCGCMSQEESVVKRILKKHPFVDLIFGTHNIHRLPELLSE 180 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 K +V +S E D E L R+ + ++ I GCDKFCT+C+VPYTRG Sbjct: 181 CYLSKEMVIEVWSKEGDVIENLPRA-----RQGKIKGWVNIMYGCDKFCTYCIVPYTRGK 235 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++ E R+L G EITLLGQNVNA+ GK + + L+ L +I + Sbjct: 236 ERSRRPDEIIQEVRRLAAEGYKEITLLGQNVNAY-GKDFEDMEYGLGHLMDELRKID-IP 293 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS +LK M R++ Y ++ + Sbjct: 294 RIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRK 353 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ ++++D IVGFP ETD+ F T+ L ++ + A++F YSPR GTP + M + Sbjct: 354 IKEAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMQDN 413 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V +VK ERL L + E GQ +EVL+E K + L G + + V Sbjct: 414 VPMHVKKERLQRLNALVNEISAKKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNF 473 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG+I+KV+IT K +L GE+V Sbjct: 474 KAPKEAIGNIVKVKITQAKTWSLDGEMV 501 >gi|75909246|ref|YP_323542.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anabaena variabilis ATCC 29413] gi|123758760|sp|Q3M8N9|MIAB_ANAVT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|75702971|gb|ABA22647.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anabaena variabilis ATCC 29413] Length = 454 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 183/454 (40%), Positives = 275/454 (60%), Gaps = 23/454 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R+ + ++GCQMN DS RM + G+E ++AD+I+ NTC IR+ A +KVYS+L Sbjct: 6 RRYHITTFGCQMNKADSERMAGILEDMGFEFSEDPNNADVILYNTCTIRDNAEQKVYSYL 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + R E DL +VVAGCVAQ EGE +LRR P +++V+GPQ RL +LLE Sbjct: 66 GR----QAKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVF 121 Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +VV T+ + +ED + R VTA++ + GC++ CT+CVVP RG+E Sbjct: 122 AGNQVVATEAVHIMEDITQ--------ARRDSTVTAWVNVIYGCNERCTYCVVPNVRGVE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256 SR+ V E +L G EITLLGQN++A+ G+ L G TF+DLLY + + Sbjct: 174 QSRTPEAVRAEMEELGRQGYKEITLLGQNIDAY-GRDLPGATPEGRHLHTFTDLLYYVHD 232 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + G+ R+R+ TSHPR ++ LIKA +L + + H+P QSG +++LK+M R +T +YR Sbjct: 233 VPGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNQLLKAMARGYTQEKYR 292 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +IID IR PD +IS+D IVGFPGET++ F T+ LVD IG+ Q + YSPR GTP + Sbjct: 293 RIIDTIRRYMPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAA 352 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435 Q+ E K++RL L + + + +G+I EVL+E+ K++ +++GR+ Sbjct: 353 LWENQLSEETKSDRLQRLNHLVNVKAAERSQRYMGRIEEVLVEEQNPKDQTQVMGRTRGN 412 Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + N G ++KV+I +V+ +L GE + Sbjct: 413 RLTFFKGDINELKGQLVKVKINEVRAFSLTGEPI 446 >gi|218780253|ref|YP_002431571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfatibacillum alkenivorans AK-01] gi|218761637|gb|ACL04103.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfatibacillum alkenivorans AK-01] Length = 461 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 172/399 (43%), Positives = 246/399 (61%), Gaps = 12/399 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ ++K+ GCQMNVYDS M + GYE DAD ++LNTC IR KA +KV+S+ Sbjct: 3 PKKLYIKTMGCQMNVYDSEAMARVLAPMGYELTAHKKDADCLLLNTCAIRAKAEQKVFSY 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+ LK + DLL+ V GCVAQ E +++ R+P V+ V GP RLPE++ +A Sbjct: 63 LGRLTGLKGNNP----DLLIGVGGCVAQQEAKKVFDRAPHVDFVFGPHAINRLPEIVAQA 118 Query: 144 RFGKR-VVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 GKR V T++ D FE + +D + GV+AF+TI GCD +CT+CVVP+ RG Sbjct: 119 EQGKRHVAATEFL--DFFEEIKQPHLDKAGPEESGVSAFVTIMSGCDNYCTYCVVPHVRG 176 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E+SR ++ E L GV EITLLGQNVN++ K G +F+ LL + E +G+ Sbjct: 177 REMSRDSQAILAEVESLAAKGVKEITLLGQNVNSYGNKEGFG---SFAGLLRLVHEAEGV 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP+D+S LI+A +L L ++HLPVQSGS+RILK MNR +T +Y + Sbjct: 234 ERIRFTTSHPKDLSQELIQAFAELPKLCKHIHLPVQSGSNRILKKMNRGYTREDYLGKVR 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R P+I +++D I GFP ET++DF+ TMDL+ + Y F+F YS R P + Sbjct: 294 ALREACPEIRLTTDIIAGFPSETEEDFQDTMDLIRRADYDSLFAFMYSDRPSAPAVKFPD 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ++ E VK+ RL + K E + + A VG +VL+E Sbjct: 354 KLSEEVKSRRLAQVLKVSEEITRAKHAAMVGSKQQVLVE 392 >gi|157692385|ref|YP_001486847.1| tRNA 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032] gi|229890424|sp|A8FDH0|MIAB_BACP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|157681143|gb|ABV62287.1| tRNA 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032] Length = 508 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 177/448 (39%), Positives = 263/448 (58%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE NS +DA++I+LNTC IRE A KV+ L Sbjct: 65 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGEL 124 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK +E DL++ V GC++Q E IL++ P V+++ G +RLPELL Sbjct: 125 GHLKALK----REKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSE 180 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 K +V +S E D E L R+ + ++ I GCDKFCT+C+VPYTRG Sbjct: 181 CYLSKEMVIEVWSKEGDVIENLPRA-----RQGKIKGWVNIMYGCDKFCTYCIVPYTRGK 235 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++ E R+L G EITLLGQNVNA+ GK + + L+ L +I + Sbjct: 236 ERSRRPDEIIQEVRRLAAEGYKEITLLGQNVNAY-GKDFEDMEYGLGHLMDELRKID-IP 293 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS +LK M R++ Y ++ + Sbjct: 294 RIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRK 353 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ ++++D IVGFP ETD+ F T+ L ++ + A++F YSPR GTP + M + Sbjct: 354 IKEAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMQDN 413 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V +VK ERL L + E GQ +EVL+E K + L G + + V Sbjct: 414 VPMHVKKERLQRLNALVNEISAKKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNF 473 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG+I+KV+IT K +L GE+V Sbjct: 474 KAPKEAIGNIVKVKITQAKTWSLDGEMV 501 >gi|121729822|ref|ZP_01682255.1| conserved hypothetical protein [Vibrio cholerae V52] gi|121628426|gb|EAX60920.1| conserved hypothetical protein [Vibrio cholerae V52] Length = 398 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 166/369 (44%), Positives = 238/369 (64%), Gaps = 7/369 (1%) Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTDYSVEDKF 160 ++ V GCVA EG+ I R+P V+V+ GPQT +RLPE++++++ V+D + +KF Sbjct: 1 MIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQTSDAPVMDISFPEIEKF 60 Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220 +RL R G TAF++I EGC K+CT+CVVPYTRG E+SR + V+ E +L + Sbjct: 61 DRLP-----EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQ 115 Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280 GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R+R+TTSHP + +D +I Sbjct: 116 GVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGIDRIRFTTSHPLEFTDDIIAV 175 Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340 + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++R RPDI ISSDFIVGFP Sbjct: 176 YEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFP 235 Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400 GETD DF+ TM L+ + + +FSF +SPR GTP ++ + E VK ERL LQ+++ Sbjct: 236 GETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYELQQQINS 295 Query: 401 QQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459 Q + ++ +G +L+E K+ +L GR+ + V IG + V+I DV Sbjct: 296 QAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFEGSPDLIGQFVDVKIVDVF 355 Query: 460 ISTLYGELV 468 ++L GEL+ Sbjct: 356 PNSLRGELL 364 >gi|172037723|ref|YP_001804224.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp. ATCC 51142] gi|229890507|sp|B1WU96|MIAB_CYAA5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|171699177|gb|ACB52158.1| tRNA-i(6)A37 modification enzyme MiaB [Cyanothece sp. ATCC 51142] Length = 448 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 184/456 (40%), Positives = 275/456 (60%), Gaps = 23/456 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+R+ + ++GCQMN DS RM + G++ + ADLI+ NTC IR+ A +KVYS Sbjct: 6 TPRRYHITTFGCQMNKADSERMAGILEDMGFKWSEDPNTADLILYNTCTIRDNAEQKVYS 65 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +LGR + R E DL +VVAGCVAQ EGE+ILRR P +++V+GPQ RL +LL + Sbjct: 66 YLGR----QAKRKHEHPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLQDLLTQ 121 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRG 200 G +VV T E + IV+ +R VTA++ I GC++ C++CVVP RG Sbjct: 122 VFDGNQVVAT--------EPIHIVEDITKPRRDSTVTAWVNIIYGCNERCSYCVVPNVRG 173 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSL 254 +E SR+ + E L G E+TLLGQN++A+ G+ L G + T +DLLY + Sbjct: 174 VEQSRTPEAIYAEMELLGKQGYKEVTLLGQNIDAY-GRDLPGVTETGRHQHTLTDLLYQV 232 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 +I G+ RLR+ TSHPR ++ LIKA +L + + H+P QSG + +LK+M R +T + Sbjct: 233 HDISGIERLRFATSHPRYFTERLIKACHELPKVCEHFHIPFQSGDNDVLKAMKRGYTHEK 292 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 YR IID+IR PD +IS+D IVGFPGET+ F T+ LVD IG+ Q + YSPR GTP Sbjct: 293 YRHIIDKIREYMPDASISADAIVGFPGETEAQFENTLKLVDDIGFDQLNTAAYSPRPGTP 352 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP 433 + Q+ E +K++RL L + ++ + + +I EVL+E ++ K+ +++GR+ Sbjct: 353 AAIWDNQLSEEIKSDRLQRLNHLVAQKAAQRSQRYLNRIEEVLVEDENPKDNTQVMGRTR 412 Query: 434 WLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468 + + G +IKV+IT+V+ +L GE + Sbjct: 413 GNRLTFFEGDIEALKGQLIKVKITEVRAFSLTGEAI 448 >gi|255525224|ref|ZP_05392166.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium carboxidivorans P7] gi|255511087|gb|EET87385.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium carboxidivorans P7] Length = 449 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 180/446 (40%), Positives = 267/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF++++GCQMN DS ++ M GYER D+DLI+ NTC +RE A KVY LG Sbjct: 15 FFIETWGCQMNEEDSEKLSGMLKKIGYERTEVKQDSDLIIFNTCCVRENAELKVYGNLGA 74 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ LK+ + L++ + GC+ Q EG +EI++R P V+++ G Y+ PE L R + Sbjct: 75 LKKLKDKKPD----LIIAICGCMMQQEGMAKEIVKRFPFVDIIFGTHNAYKFPEYLNRVK 130 Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + + ED IV+G +RK V AF+TI GC+ FCT+C+VP+ RG E Sbjct: 131 QEQNSIIEIQNKED-----GIVEGLPIDRKSDVKAFVTIMYGCNNFCTYCIVPFVRGRER 185 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +E + LI G EITLLGQNVN++ GK L+ K +F++LL ++EI+GL R+ Sbjct: 186 SRKPEDIENEIKDLISKGYKEITLLGQNVNSY-GKDLEP-KVSFANLLRRINEIEGLERI 243 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 ++ T HP+D + ++ A + + + +HLPVQSGS RILK MNR +T +Y ++ RIR Sbjct: 244 KFMTPHPKDFTQDVLDAIAECENVCEQVHLPVQSGSSRILKKMNRHYTKEQYLDLVRRIR 303 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PD+AI++D IVGFPGET++DF T+ L ++ Y AF+F YS R GTP M EQ+ Sbjct: 304 ETIPDVAITTDIIVGFPGETEEDFEETLSLAREVQYDSAFTFIYSRRKGTPADEMEEQIA 363 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442 E+VK ER L + + N G+I E+L+E K + KL GR+ + V Sbjct: 364 EDVKHERFNRLVEIINASSAKNNKKYEGRIEEILVEDFSKNDDTKLTGRTRTGKLVNFPG 423 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 +IG ++KV+I +L GE + Sbjct: 424 SKDSIGKLVKVKIVKANSFSLIGEEI 449 >gi|148379760|ref|YP_001254301.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A str. ATCC 3502] gi|153933044|ref|YP_001384058.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A str. ATCC 19397] gi|153936669|ref|YP_001387598.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A str. Hall] gi|229890482|sp|A7FUL1|MIAB_CLOB1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890486|sp|A5I2S3|MIAB_CLOBH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|148289244|emb|CAL83340.1| putative radical SAM superfamily protein [Clostridium botulinum A str. ATCC 3502] gi|152929088|gb|ABS34588.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A str. ATCC 19397] gi|152932583|gb|ABS38082.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A str. Hall] Length = 450 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 176/443 (39%), Positives = 268/443 (60%), Gaps = 13/443 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF++++GCQMN DS ++ M +GY R ++AD+I+ NTC +RE A KVY LG Sbjct: 16 FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAELKVYGNLGI 75 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ LK+ + +L++ V GC+ Q +G E I ++ P V++++G + P L + Sbjct: 76 LKGLKS----KNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V +++K E I + +RK + AF+TI GC+ FCT+C+VPY RG E S Sbjct: 132 KKDTSV---LKIQEK-ENSIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGRERS 187 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+ + E +KLI G EITLLGQNVN++ GK L+ TF++LL ++ I+GL R+R Sbjct: 188 RTPENIEAEIKKLISEGYKEITLLGQNVNSY-GKDLE-PNVTFAELLKRVNNIEGLERVR 245 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D++D +I+A D L +HLPVQSGS ILK MNR + +Y ++ +I+ Sbjct: 246 FMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIKK 305 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P++A+S+D IVGFPGET+ DF T+ LV ++ Y AF+F YS R GTP + +QV E Sbjct: 306 LIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVPE 365 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443 +VK +R L + L E N A G+I EVL+E K ++ KL+GR+ + V Sbjct: 366 DVKHKRFNRLVEVLNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIGD 425 Query: 444 NHNIGDIIKVRITDVKISTLYGE 466 +IG+++ V+I +L GE Sbjct: 426 KDSIGELVNVKIIKANSFSLTGE 448 >gi|159027937|emb|CAO87100.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 446 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 181/452 (40%), Positives = 276/452 (61%), Gaps = 23/452 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+R+ + ++GCQMN DS RM + G++ ++ADLI+ NTC IR+ A +KVYS+ Sbjct: 5 PRRYHITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSY 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + R + DL +VVAGCVAQ EGE++LRR P V++++GPQ RL +LL++ Sbjct: 65 LGR----QAKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQV 120 Query: 144 RFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G +VV T+ + +ED + R +TA++ + GC++ CT+CVVP RG+ Sbjct: 121 FDGSQVVATEPIHIMEDITKP--------RRDSNITAWVNVIYGCNERCTYCVVPGVRGV 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------FSDLLYSLS 255 E SR+ + + E +L G EITLLGQN++A+ G+ L G + F+DLLY + Sbjct: 173 EQSRTPAAIRAEMEQLGQQGYQEITLLGQNIDAY-GRDLPGVTASGRHLHNFTDLLYYIH 231 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 ++ G+ RLR+ TSHPR ++ LIKA +L + + H+P QSG + ILK+M R +T +Y Sbjct: 232 DVAGIERLRFATSHPRYFTERLIKACQELPKVCEHFHIPFQSGDNDILKAMKRGYTQEKY 291 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 RQII IR + PD AIS+D IVGFPGET+ F T+ LVD+IG+ Q + YSPR GTP Sbjct: 292 RQIIANIRDLMPDAAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPA 351 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 + Q+ E VK++RL L + + + +G+I E+L+E + K+ +++GR+ Sbjct: 352 AIWDNQLSEQVKSDRLQRLNHLVATKAAERSQRYLGRIEEILVEDVNPKDASQVMGRTRG 411 Query: 435 LQSVVLNSKNHNI-GDIIKVRITDVKISTLYG 465 + + G +KV+IT+V+ +L G Sbjct: 412 NRLTFFTGNIEKLRGTFVKVKITEVRPFSLTG 443 >gi|320107085|ref|YP_004182675.1| MiaB family RNA modification protein [Terriglobus saanensis SP1PR4] gi|319925606|gb|ADV82681.1| RNA modification enzyme, MiaB family [Terriglobus saanensis SP1PR4] Length = 452 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 179/452 (39%), Positives = 276/452 (61%), Gaps = 29/452 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F+++++GCQMN +DS ++ +GY RV + A LI+ NTC IR+KA +KV+ L Sbjct: 18 FYIETFGCQMNAHDSEKVIGTLEHEGYTRVEDEEAAGLILYNTCSIRDKAEQKVFHRLNE 77 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + ++ EG V+ GCVAQ EGE+I ++P V++V G +Y LPE+L R G Sbjct: 78 YKKMQG----EGKKFAVI--GCVAQQEGEKIFEKAPYVSLVSGSASYRNLPEMLVRLEAG 131 Query: 147 KRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + + TD + + +F S N RG ++TI EGCDKFC++CVVPYTRG Sbjct: 132 ENRITGLDDRQTDETFDTEFTARS------NPHRG---YITIIEGCDKFCSYCVVPYTRG 182 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR+ V+ EAR++ D G +I LLGQNVN++R K TF+++L ++ ++ G+ Sbjct: 183 KERSRTSDSVLAEARRMADMGYTDIQLLGQNVNSYRD---SSGKRTFAEVLGAIGQMAGV 239 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHPRD + +I + + ++HLPVQSGS +LK+M R +T Y + I Sbjct: 240 RRVRFTTSHPRDFTQDIIDVIDAVPQVCDHVHLPVQSGSSIVLKAMQREYTREWYLERIA 299 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 I++ + +I++++D IVGFPGET++DF T L+D++GY F+F+YSPR TP +M E Sbjct: 300 WIKAAKREISMTTDIIVGFPGETEEDFEQTASLLDEVGYDGVFAFQYSPRPNTPAIHMEE 359 Query: 381 QVDENVKAERLLCLQKKLRE-QQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV- 438 V VKA RL L + RE Q++S+ +GQ++EV++E + +++G++ GRS ++V Sbjct: 360 TVGVEVKAARLQRLMDRQRELQRISYGRH-LGQVMEVMVEGYNRQRGQVTGRSSQNKTVN 418 Query: 439 --VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V +G VRIT ++L GE V Sbjct: 419 FTVTQPILPALGSYQTVRITQTFPNSLVGEAV 450 >gi|168184857|ref|ZP_02619521.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum Bf] gi|182672056|gb|EDT84017.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum Bf] Length = 450 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 178/446 (39%), Positives = 268/446 (60%), Gaps = 17/446 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +FF++++GCQMN DS ++ M +GY R ++AD+I+ NTC +RE A KVY LG Sbjct: 15 KFFIETWGCQMNEEDSEKLSGMLKREGYVRTEERENADVIIFNTCCVRENAELKVYGNLG 74 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143 ++ LK + +L++ V GC+ Q +G E I ++ P V++++G + A Sbjct: 75 ILKGLK----YKNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNF------A 124 Query: 144 RFGKRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + V D SV E+ I+ + +RK + AF+TI GC+ FCT+C+VPY RG Sbjct: 125 NYLNEVKKKDTSVLKIQEKEDIIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGR 184 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR+ + E +KLI G EITLLGQNVN++ GK L+ K TF++LL ++ I+GL Sbjct: 185 ERSRTPENIEAEIKKLISEGYKEITLLGQNVNSY-GKDLE-PKITFAELLKRVNNIEGLE 242 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D++D +I+A D L +HLPVQSGS ILK MNR + +Y ++ + Sbjct: 243 RVRFMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSK 302 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ + P++A+S+D IVGFPGET+ DF T+ LV ++ Y AF+F YS R GTP + +Q Sbjct: 303 IKKLIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQ 362 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 V E+VK R L + + E N A G+I EVL+E K ++ KL+GR+ + V Sbjct: 363 VPEDVKHNRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRAGKLVNF 422 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466 +IG ++ V+IT +L GE Sbjct: 423 IGNKESIGKLVNVKITKANSFSLTGE 448 >gi|196231514|ref|ZP_03130372.1| RNA modification enzyme, MiaB family [Chthoniobacter flavus Ellin428] gi|196224367|gb|EDY18879.1| RNA modification enzyme, MiaB family [Chthoniobacter flavus Ellin428] Length = 463 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 174/456 (38%), Positives = 274/456 (60%), Gaps = 16/456 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F+K+YGCQMN DS ++ M +GYE +AD+++LNTC +R+ A +K +G Sbjct: 3 KVFLKTYGCQMNERDSEQVARMLVEKGYEMTPHETEADVVLLNTCSVRDMAEQKAIGKMG 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + L+ ++ +++ GC+AQ+ G E+ R V++VVG Q ++R+ E +E+ Sbjct: 63 MLSRLRANK----PEMIFGFLGCMAQSRGAELTRDMGHVDLVVGTQKFHRVAEYVEQIIQ 118 Query: 146 GKRVV------DTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 KR + D +S VE++ + ++ TAF++I +GC+ CTFC+VP Sbjct: 119 RKRELRERLMDDARFSIVDVEEEAGSQETIREHVLTEKQATAFVSIMQGCNMHCTFCIVP 178 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSL 254 TRG E SR + ++V E L+ GV E+TLLGQ VN + + + K F LL ++ Sbjct: 179 STRGAERSRRIEEIVHEVEGLVARGVKEVTLLGQIVNLFGRHEFEKQDGKSPFVQLLEAV 238 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 I+GL RLR+T+ HP D L+ A +L LMP++HLP+QSGSDRILK+M+R +TA + Sbjct: 239 HAIEGLKRLRFTSPHPIGFRDDLVNAFAELPKLMPHVHLPMQSGSDRILKAMHRGYTAEK 298 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 Y + +++R+ RPDIA+++D IVGFPGETD+D+ AT DLV ++G+ A+ F+YSPR TP Sbjct: 299 YFSLTEKLRAARPDIAMTTDIIVGFPGETDEDYAATRDLVQRVGFDNAYIFRYSPRRDTP 358 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP 433 + M +QV E VK ER + + + + +A VG+ +E+L E K KL GR+P Sbjct: 359 AATMGDQVAEAVKEERNQDVLRVVDTLAKAKGEALVGRNVEILCEGPSKTNDAKLTGRTP 418 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + V+ +IG+I +V ++ +LYG+ V Sbjct: 419 GNKIVIFEGSERHIGEIFEVAVSRSSGFSLYGDPAV 454 >gi|170078520|ref|YP_001735158.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus sp. PCC 7002] gi|229891029|sp|B1XQK7|MIAB_SYNP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|169886189|gb|ACA99902.1| tRNA-i(6)A37 thiotransferase enzyme [Synechococcus sp. PCC 7002] Length = 451 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 181/455 (39%), Positives = 272/455 (59%), Gaps = 23/455 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+++ + ++GCQMN DS RM + GY ADL++ NTC IR+ A +KVYS+ Sbjct: 4 PRQYHITTFGCQMNKADSERMAGILEEMGYHFTEDPYAADLVLYNTCTIRDNAEQKVYSY 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + R +E DL ++VAGCVAQ EGE +LRR P +++++GPQ RL +LLE+ Sbjct: 64 LGR----QAKRKQEKPDLTLIVAGCVAQQEGESLLRRVPELDLIMGPQHANRLQDLLEQV 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G +VV T E + IV+ +R VTA++ + GC++ CT+CVVP RG Sbjct: 120 EGGSQVVAT--------EPIHIVEDITKPRRDSTVTAWVNVIYGCNEHCTYCVVPGVRGT 171 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLS 255 E SR + E +L G E+TLLGQN++A+ G+ L G K T +DLLY + Sbjct: 172 EQSRYPEAIRAEMEELGRQGFKEVTLLGQNIDAY-GRDLPGTTPEGRNKYTLTDLLYYVH 230 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 ++ G+ R+R+ TSHPR ++ LIKA +L + + H+P QSG + +LK+M R +T +Y Sbjct: 231 DVPGIERIRFATSHPRYFTERLIKACQELPKVCEHFHIPFQSGDNEVLKAMRRGYTHEKY 290 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 R+II+ IRS PD +IS+D IV FPGET++ F T+ LVD+IG+ Q + YSPR GTP Sbjct: 291 RRIINTIRSYMPDASISADAIVAFPGETEEQFENTLKLVDEIGFDQLNTAAYSPRPGTPA 350 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPW 434 + Q+ E VK +RL L + ++ + G+I EVL+E ++ K +++GR+ Sbjct: 351 ATWDNQLSEEVKGDRLQRLNHLVAQKAAERSQRYAGRIEEVLVEDQNPKNPSQVMGRTRG 410 Query: 435 LQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + + N G I+ V+IT+ + +L GE V Sbjct: 411 NRLTFFEGEINELKGKIVAVKITEARAFSLTGEAV 445 >gi|212639354|ref|YP_002315874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus flavithermus WK1] gi|229890441|sp|B7GJM6|MIAB_ANOFW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|212560834|gb|ACJ33889.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1] Length = 527 Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 180/448 (40%), Positives = 263/448 (58%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE + +DA++I+LNTC IRE A KV+ + Sbjct: 84 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEI 143 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DLL+ V GC++Q E +IL++ V+++ G +RLP +L+ Sbjct: 144 GHLKPLKQN----NPDLLLGVCGCMSQEESVVNKILKQFQYVDMIFGTHNIHRLPYILKE 199 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V RK + A++ I GCDKFCT+C+VPYTRG Sbjct: 200 AYMSKEMVVEVWSKEGDVIENLPKV-----RKGNIKAWVNIMYGCDKFCTYCIVPYTRGK 254 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L G EITLLGQNVNA+ GK K DL+ L +I + Sbjct: 255 ERSRRPEDIIQEVRHLAAQGYKEITLLGQNVNAY-GKDFTDMKYGLGDLMDELRKI-DIP 312 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS +LK M R++T +Y +++ + Sbjct: 313 RIRFTTSHPRDFDDRLIEVLAKGGNLVEHIHLPVQSGSSEVLKMMARKYTREQYLELVRK 372 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P +A+++D IVGFP ETD+ F T+ L ++ + AF+F YSPR GTP + M++ Sbjct: 373 IKEAIPGVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMVDN 432 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + E GQ++EVL+E K L G + + V Sbjct: 433 VPMEVKKERLQRLNALVNEISAKKMKEYEGQVVEVLVEGESKNNPDVLAGYTRKNKLVNF 492 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ VRIT+ K TL GE+V Sbjct: 493 VGPKSAIGQLVNVRITEAKTWTLNGEMV 520 >gi|297617255|ref|YP_003702414.1| RNA modification enzyme, MiaB family [Syntrophothermus lipocalidus DSM 12680] gi|297145092|gb|ADI01849.1| RNA modification enzyme, MiaB family [Syntrophothermus lipocalidus DSM 12680] Length = 447 Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 180/448 (40%), Positives = 266/448 (59%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + +YGCQMN D+ + + GY S ++A+LI+ NTC +R A KVY L Sbjct: 9 KKYSILTYGCQMNERDTETIAGLLEKSGYVEAASPEEANLIIFNTCSVRTSAENKVYGKL 68 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERA 143 G I+ LK +R DLLV GC+AQ E + L +V+++ G + LP L+E+A Sbjct: 69 GEIKRLKKAR----PDLLVGFGGCMAQMEEVRKKLGEGGVVDIIFGTHNLHELPRLVEKA 124 Query: 144 RFG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G + V+D D E L R GV+AF+ I GC+ FC++C+VP+TRG Sbjct: 125 EAGVERPVIDVWPEAGDIVEGLPA-----RRTGGVSAFVNIMFGCNNFCSYCIVPFTRGR 179 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR S ++DE + L+ GV E+TLLGQNVN++ GKGL+ E F+ LL ++EI GL Sbjct: 180 ERSRKPSDIIDEVKDLVQQGVKEVTLLGQNVNSY-GKGLEPE-TDFASLLELVNEIPGLE 237 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD+S+ L+ + ++H P+Q+GS+RILK+MNR +T Y ++ + Sbjct: 238 RIRFTTSHPRDVSERLLSTIASCRKVCEHIHAPLQAGSNRILKAMNRGYTREYYLDLVHK 297 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R + P +A+++D IVGFPGE+D DF T+D+V +I + AF+F YSPR GT + + +Q Sbjct: 298 MREIVPGVAVTTDLIVGFPGESDRDFEDTIDMVKRIRFDAAFTFMYSPRSGTKAARLSDQ 357 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440 V VK ERLL L + + N G+ +EVL+E K KL GR+ + VV Sbjct: 358 VPLEVKKERLLQLNEIQYNIALEANRRFEGKDVEVLVEGPSKTNPRKLTGRTRTNRIVVF 417 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 K G ++ VR+ + K TL GE V Sbjct: 418 EGKPDLAGRLVMVRVREAKTFTLLGEAV 445 >gi|78042734|ref|YP_360230.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Carboxydothermus hydrogenoformans Z-2901] gi|123576193|sp|Q3ACA4|MIAB_CARHZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|77994849|gb|ABB13748.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Carboxydothermus hydrogenoformans Z-2901] Length = 440 Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 180/450 (40%), Positives = 276/450 (61%), Gaps = 19/450 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++ ++GCQMNV+DS + + S G+ ADLI++NTC +RE A KV++ + Sbjct: 4 KSYYIITHGCQMNVHDSETIAGILESMGFVPSPEEKTADLIIINTCSVRETAENKVFTKI 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK +E DL++ V GC+ Q E + +L R P ++ + G LP++LER Sbjct: 64 GELKKLK----RENPDLVIGVGGCIPQQEKVAKRLLERFPHLDFIFGTHNLPELPKILER 119 Query: 143 ARFGK--RVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 F K RV++ S IV+G R+ GV A++TI GC+ FCT+C+VPY R Sbjct: 120 V-FEKHERVLEVWQS------EGQIVEGIPVKREPGVRAWVTIMYGCNNFCTYCIVPYVR 172 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR ++ E R+L+ G E+TLLGQNVN++ GK L G K F++LL + +I G Sbjct: 173 GRERSRKKEDILQEIRQLVAEGYREVTLLGQNVNSY-GKDLKG-KPMFAELLADIEKIDG 230 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+TTSHPRD++D +I+ + +LHLPVQ+GS++ILK+M+R +T Y ++ Sbjct: 231 LWRVRFTTSHPRDLTDDVIEVMASSRKICEHLHLPVQAGSNKILKAMHRGYTREYYLNLV 290 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++IR+ P ++ ++D IVGFPGET++DF T+DLV K+ Y AF+F Y+ R GTP + M Sbjct: 291 EKIRAKIPKVSFTTDIIVGFPGETEEDFEQTLDLVRKVRYDSAFTFVYNKRTGTPAAEMK 350 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 +QV E VK+ R+ L + + N G I E+L+E K ++ KL GR+ + V Sbjct: 351 DQVPEEVKSRRIQELIELQNGISLELNKNEEGNIHEILVEGKSKTDETKLAGRTRTNKLV 410 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V N +G ++KV+IT+ K+ L G LV Sbjct: 411 VFNGNEDLVGKLVKVKITEGKLFHLEGVLV 440 >gi|257060632|ref|YP_003138520.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp. PCC 8802] gi|256590798|gb|ACV01685.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8802] Length = 446 Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 180/454 (39%), Positives = 280/454 (61%), Gaps = 23/454 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + + ++GCQMN DS RM + + G+ + ADLI+ NTC IR+ A +KVYS+L Sbjct: 6 RHYHITTFGCQMNKADSERMAGILENMGFIWSEDPNQADLILYNTCTIRDNAEQKVYSYL 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + R E DL ++VAGCVAQ EGE+ILRR P +++V+GPQ RL +LL++ Sbjct: 66 GR----QAKRKHENPDLTLIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVF 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +VV T E + I++ +R +TA++ + GC++ C++CVVP RG+E Sbjct: 122 DGNQVVAT--------EPIHIIEDITKPRRDSTITAWVNVIYGCNERCSYCVVPNVRGVE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256 SR+ ++ E L G E+TLLGQN++A+ G+ L G + T +DLLY++ + Sbjct: 174 QSRTPEAILAEMELLGKQGYKEVTLLGQNIDAY-GRDLPGVTESGRHQHTLTDLLYTVHD 232 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + G+ R+R+ TSHPR ++ LI A +L + + H+P QSG + ILK+M R +T +YR Sbjct: 233 VVGIERIRFATSHPRYFTERLIAACQELSKVCEHFHIPFQSGDNDILKAMKRGYTHEKYR 292 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 QIID+IR PD +IS+D IVGFPGET++ F T++LV+ IG+ Q + YSPR GTP + Sbjct: 293 QIIDKIRDYMPDASISADAIVGFPGETEEQFENTLNLVEDIGFDQLNTAAYSPRPGTPAA 352 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWL 435 Q+ E VK++RL L + ++ + +G+I EVL+E ++ K+ +++GR+ Sbjct: 353 LWDNQLSEEVKSDRLQRLNHLVAQKAAERSQRYLGRIEEVLVEDQNPKDSTQVMGRTRGN 412 Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + N G +IKV+IT+V+ +L GE+V Sbjct: 413 RLTFFKGDINQLKGRLIKVKITEVRAFSLTGEIV 446 >gi|302391921|ref|YP_003827741.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acetohalobium arabaticum DSM 5501] gi|302203998|gb|ADL12676.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acetohalobium arabaticum DSM 5501] Length = 450 Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 177/443 (39%), Positives = 266/443 (60%), Gaps = 13/443 (2%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 +++YGCQMN +DS ++ + +GY+ + + AD+I+LNTC IRE A KV+ +G ++ Sbjct: 17 IETYGCQMNEHDSEKLAGVLKEKGYKLIEDTEKADVIILNTCCIRENAEVKVHGKIGYLK 76 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 K +E DL++ + GC+ Q EG E+I + P V++V G + +LL+ A Sbjct: 77 QYK----RENPDLIIGICGCMMQQEGMAEKIKDKHPHVDIVFGTHNIHEFSQLLDAAEEE 132 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + +++ I D R+ A++TI GC+ FCT+C+VPY RG E SRS Sbjct: 133 SETIIDIWGEKEEL----IPDLPTRRETDHKAWVTIIYGCNNFCTYCIVPYVRGREKSRS 188 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +VDE ++L D+GV E+TLLGQNVN++ G LD K F+DLL L +I+G+ R+RY Sbjct: 189 SIDIVDEIKELADDGVKEVTLLGQNVNSY-GYDLD-RKIDFADLLEELDQIEGIERIRYM 246 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHPRD + LIK D + + + HLP+QSGS RIL+ MNR +T EY +++ IRS Sbjct: 247 TSHPRDFTTKLIKTIADSNKVCEHFHLPIQSGSSRILEKMNRGYTQEEYLALVEEIRSYI 306 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P AI++DFIVGFPGE D+DF T+ LV+++ + A++FKYS R GTP + M Q++E+V Sbjct: 307 PQAAITTDFIVGFPGERDEDFAETLKLVEEVEFDMAYTFKYSQRSGTPAAEMEGQIEEDV 366 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKNH 445 K +RL L + N +G+ ++VL + K + GR+ + VV NS Sbjct: 367 KQKRLQKLMDIQSDISAQKNKKLLGKTVKVLGDGESKNNPERQTGRTRTNKIVVFNSDKD 426 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 G +I V+I TL G+LV Sbjct: 427 LTGKLINVKINKASSWTLTGDLV 449 >gi|315648053|ref|ZP_07901154.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Paenibacillus vortex V453] gi|315276699|gb|EFU40042.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Paenibacillus vortex V453] Length = 519 Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 174/447 (38%), Positives = 265/447 (59%), Gaps = 14/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + V +YGCQMN +DS ++ + GY+ AD+I+LNTC IRE A +KV+ L Sbjct: 74 KHYIVYTYGCQMNEHDSETIKGLLEQMGYQATEDRKQADIILLNTCAIRENAEDKVFGEL 133 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK E D+L+ V GC++Q E IL++ V+++ G +RLP L++ Sbjct: 134 GHLKHLK----IEKPDMLLGVCGCMSQEESVVNRILQKHGFVDLIFGTHNVHRLPHLIQE 189 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A F K +V +S E I++ ++ G+ ++ I GCDKFCT+C+VPYTRG E Sbjct: 190 ALFSKEMVVEVWSKEG-----DIIENLPKKREGLRGWVNIMYGCDKFCTYCIVPYTRGKE 244 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR V+ E R+L G EITLLGQNVNA+ GK + + F DL+ ++ +I + R Sbjct: 245 RSRRPEDVIAEVRELARQGYKEITLLGQNVNAY-GKDFEDIEYRFGDLMDAIHKID-IPR 302 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHPRD D LI+ L+ ++HLPVQSGS ++LK M+R++T Y ++ +I Sbjct: 303 VRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSSQVLKKMSRKYTRETYLELAHKI 362 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + P++A ++D IVGFPGETD+ F T+ LV ++GY A++F YSPR GTP + M + V Sbjct: 363 KKAIPNVAFTTDIIVGFPGETDEQFEETLSLVREVGYDAAYTFIYSPREGTPAAVMEDNV 422 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441 VK+ERL L + E ND +G +EVL+E K ++ GR+ + V Sbjct: 423 PMEVKSERLQRLNAAISEYSRQSNDRLLGATVEVLVEGVSKNNDSMLSGRTRTNKLVHFE 482 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G + V+ITD K + G+++ Sbjct: 483 GSRDLVGTFVNVQITDTKTWYIKGDMI 509 >gi|83589960|ref|YP_429969.1| tRNA-i(6)A37 modification enzyme MiaB [Moorella thermoacetica ATCC 39073] gi|123725725|sp|Q2RJG3|MIAB_MOOTA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|83572874|gb|ABC19426.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moorella thermoacetica ATCC 39073] Length = 444 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 183/454 (40%), Positives = 272/454 (59%), Gaps = 31/454 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + +YGCQMN DS M D+ GYE V ++A +I+L+TC +REKA KVY LG+ Sbjct: 8 FKIITYGCQMNQRDSEMMADLLQDAGYEPVAREEEAGVIILDTCCVREKAENKVYGKLGQ 67 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE--R 142 I LK++ DL++ VAGC+ Q G E+I +++P V++++G LP+L+E + Sbjct: 68 IEKLKSA----NPDLVIAVAGCMVQQPGVAEKIRQQAPYVDLLLGTGNLQELPQLIEEIK 123 Query: 143 ARFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 A R+V + VED R R RG AF+TI GC+ FCT+C+VPY R Sbjct: 124 AMHRPRIVVGEQEGPVVEDLPRR---------RARGAQAFVTITYGCNNFCTYCIVPYVR 174 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR ++ E ++L+D GV E+TLLGQNVN++ DG F+ LL ++ ++G Sbjct: 175 GRERSRRPENIIKEVKELVDQGVIEVTLLGQNVNSYGRDLRDG--INFAGLLERVNAVEG 232 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+RY TSHPRD + L+ LD + ++HLPVQ+GS+RIL+ M+R +T Y +++ Sbjct: 233 LKRIRYVTSHPRDFTPELVTTISRLDKVCEHVHLPVQAGSNRILELMHRGYTREHYLELV 292 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +R P I++++D IVGFPGET+ DF T+DLV ++ + AF+F YSPR GT + M Sbjct: 293 ADLRRHIPGISLTTDLIVGFPGETEADFEDTLDLVARVQFDNAFTFMYSPRRGTEAATMP 352 Query: 380 EQVDENVKAERLLCLQKKLREQQVSF----NDACVGQIIEVLIEKHGK-EKGKLVGRSPW 434 Q+ +K ERL K+L E Q S N+A VGQ +EVL+E K + +L GR+ Sbjct: 353 GQLPTAIKKERL----KRLMELQNSISLAKNEALVGQEVEVLVEGPSKTDPDQLSGRTRT 408 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + ++ G +++VR+T + L GE+V Sbjct: 409 NKLIIFPGDQSLTGRLVRVRLTRAQTWLLKGEMV 442 >gi|117928695|ref|YP_873246.1| RNA modification protein [Acidothermus cellulolyticus 11B] gi|229890412|sp|A0LV00|MIAB_ACIC1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|117649158|gb|ABK53260.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidothermus cellulolyticus 11B] Length = 497 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 175/453 (38%), Positives = 270/453 (59%), Gaps = 20/453 (4%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ + V+++GCQMN++DS R+ + + GY R + AD++V NTC +RE A ++Y Sbjct: 25 PRTYQVRTFGCQMNMHDSERIAGLLEAAGYVRAADDEPADVVVFNTCAVRENADNRLYGN 84 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K ++ D+ + V GC+AQ + +I+RR+P V+VV G LP LLERA Sbjct: 85 LGLLLPVKKAK----PDMQIAVGGCLAQKDKGDIVRRAPWVDVVFGTHNIEALPVLLERA 140 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201 R + + VE + E L + +R A++ I GC+ CTFC+VP RG Sbjct: 141 RIAR-----EAQVEIR-EALEVFPSTLPSRRESVYAAWVAISVGCNNTCTFCIVPSLRGR 194 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 E R ++ E + L+ +GV E+TLLGQNVN++ G+D G++ F+ LL + I GL Sbjct: 195 ERDRRPGDILREIQTLVADGVLEVTLLGQNVNSY---GVDFGDRQAFAKLLRACGTIDGL 251 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HPRD +D +I A + +MP LH+P+QSGSD +L+ M R + +Y II Sbjct: 252 ERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDAVLRRMRRSYRKEKYLDIIS 311 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+RS PD AI++D IVGFPGET+DDF T+D+V K +A AF+F+YS R GTP + M + Sbjct: 312 RVRSAIPDAAITTDIIVGFPGETEDDFAETLDVVRKARFAGAFTFQYSKRPGTPAAEMPD 371 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK---EKGKLVGRSPWLQ 436 QV +V A+R L + + + N A VG+++EVL+ E G+ E ++ GR+P + Sbjct: 372 QVPPDVVADRFARLVALVEQIALEENQAQVGRVVEVLVAEGEGRKDAETHRMSGRAPDNR 431 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 V + + GD++ V +T L + V+ Sbjct: 432 LVHFRATDARPGDVVTVAVTQAAPHCLIADQVL 464 >gi|166367538|ref|YP_001659811.1| tRNA-i(6)A37 modification enzyme [Microcystis aeruginosa NIES-843] gi|229890619|sp|B0JVM6|MIAB_MICAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|166089911|dbj|BAG04619.1| tRNA-i(6)A37 modification enzyme [Microcystis aeruginosa NIES-843] Length = 446 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 180/452 (39%), Positives = 277/452 (61%), Gaps = 23/452 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+R+ + ++GCQMN DS RM + G++ ++ADLI+ NTC IR+ A +KVYS+ Sbjct: 5 PRRYHITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSY 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + R + DL ++VAGCVAQ EGE++LRR P V++++GPQ RL +LL++ Sbjct: 65 LGR----QAKRKQTQPDLTLIVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQV 120 Query: 144 RFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G +VV T+ + +ED + R +TA++ + GC++ CT+CVVP RG+ Sbjct: 121 FDGSQVVATEPIHIMEDITKP--------RRDSNITAWVNVIYGCNERCTYCVVPGVRGV 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------FSDLLYSLS 255 E SR+ + + E +L G EITLLGQN++A+ G+ L G + F+DLLY + Sbjct: 173 EQSRTPAAIRAEMAQLGQQGYQEITLLGQNIDAY-GRDLPGVTASGRHLHNFTDLLYYVH 231 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 ++ G+ RLR+ TSHPR ++ LIKA +L + + H+P QSG + ILK+M R +T +Y Sbjct: 232 DVAGIERLRFATSHPRYFTERLIKACQELPKVCEHFHIPFQSGDNDILKAMKRGYTQEKY 291 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 RQII IR + PD AIS+D IVGFPGET+ F T+ LVD+IG+ Q + YSPR GTP Sbjct: 292 RQIIANIRDLMPDAAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPA 351 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 + +Q+ E VK++RL L + + + +G+I E+L+E + K+ +++GR+ Sbjct: 352 AIWDDQLSEQVKSDRLQRLNHLVATKAAERSQRYLGRIEEILVEDVNPKDASQVMGRTRG 411 Query: 435 LQSVVLNSKNHNI-GDIIKVRITDVKISTLYG 465 + + G +KV+IT+V+ +L G Sbjct: 412 NRLTFFTGDIEELRGKFVKVKITEVRPFSLTG 443 >gi|323698031|ref|ZP_08109943.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. ND132] gi|323457963|gb|EGB13828.1| RNA modification enzyme, MiaB family [Desulfovibrio desulfuricans ND132] Length = 450 Score = 316 bits (809), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 182/456 (39%), Positives = 272/456 (59%), Gaps = 30/456 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F + ++GCQMNV+DS + S+G+E DDA + +LNTC +R+K +KVYS LG Sbjct: 4 KFHITTFGCQMNVHDSQWLTRALESRGWEETGE-DDAQVYILNTCSVRDKPEQKVYSELG 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R+ + K + V GCVAQ G R P V +V G P LER Sbjct: 63 RV----AAHCKRDESVFAAVGGCVAQQVGRGFFERFPFVRLVFGSDGIAGAPNALERIAA 118 Query: 146 G--KRVVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +RV D+ ++ ++ ER N ++ AF+ I +GCD FC +C+VPYTRG + Sbjct: 119 GSDERVALLDFVTLYEERERPETPAAPDNTRQ---AFVNIMQGCDNFCAYCIVPYTRGRQ 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGL 260 SR+ ++DE R L+DNGV EITLLGQNVN++ GLD G +F+ LL +++ I GL Sbjct: 176 KSRTPDAILDECRSLVDNGVREITLLGQNVNSF---GLDKGGTGVSFAQLLRAVAAIPGL 232 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR+TTSHP+D++ +I+A G+L+ L P LHLP+Q+GSDR+LK+M R++ Y +I+D Sbjct: 233 DRLRFTTSHPKDIAGEVIRAFGELENLCPSLHLPMQAGSDRVLKAMRRKYDMKRYLEIVD 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +++ RPDI++++D IVGFPGET++DF+ T+ +V+ +G+ +FSFKYS R G NM Sbjct: 293 GLKAARPDISLTTDLIVGFPGETEEDFKETLRMVELVGFESSFSFKYSDRPGVAAVNMEP 352 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIEKHGK-EKGKLV---GRS 432 +V AERLL +L+ Q + C VG + IE + ++G + GR Sbjct: 353 KVPAEEAAERLL----RLQTLQNNITRKCLKNLVGVETDAFIEGLSRMQEGDALSWKGRD 408 Query: 433 PW--LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 P + +V + +G ++ VRI + K +L GE Sbjct: 409 PAGRIVNVSVAESGDLVGRMVPVRIVEAKKHSLVGE 444 >gi|299136873|ref|ZP_07030056.1| RNA modification enzyme, MiaB family [Acidobacterium sp. MP5ACTX8] gi|298601388|gb|EFI57543.1| RNA modification enzyme, MiaB family [Acidobacterium sp. MP5ACTX8] Length = 472 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 178/450 (39%), Positives = 267/450 (59%), Gaps = 27/450 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F+++++GCQMN +DS ++ +GY +V DA LI+ NTC IR+KA +KV+ L Sbjct: 18 FYIETFGCQMNAHDSEKVVGTLLREGYSQVVDEADAGLILYNTCSIRDKAEQKVFHRLNE 77 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + ++ EG V+ GCVAQ EG +I R+P V++V G +Y LPE+L R G Sbjct: 78 YKRMQG----EGKKFAVL--GCVAQQEGNKIFERAPYVSLVAGSASYRNLPEMLARLEAG 131 Query: 147 KRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + + TD + + +F + N RG ++TI EGCDKFC++CVVPYTRG Sbjct: 132 ETRITGLDDRQTDETFDTEFTSRT------NPHRG---YITIIEGCDKFCSYCVVPYTRG 182 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKG 259 E SR+ + V+ EA+++ G EI LLGQNVN++ LD K +F++LL ++ E+ G Sbjct: 183 KERSRTSASVLAEAQRIAQMGFTEIQLLGQNVNSY----LDPSGKRSFAELLAAVGEVNG 238 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+TTSHPRD + ++ A + L ++HLPVQSGS +L++M R +T Y + I Sbjct: 239 IKRVRFTTSHPRDFTKDIVDAIDAVPTLCDHVHLPVQSGSTDVLRAMQRDYTRDWYLERI 298 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++ R DI+++SD IVGFPGETD DF T+ L++ +GY + FKYSPR TP +M Sbjct: 299 AWTKAARRDISLTSDIIVGFPGETDRDFEDTITLLETVGYDAIYGFKYSPRPNTPAIHMH 358 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV- 438 + + E+VK RL L + RE Q + Q +EV++E +G++ GRS ++V Sbjct: 359 DSIPEDVKVARLAILNARQREIQRENYGRHLDQTVEVMVEHGANSRGQITGRSTQNKTVN 418 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + G I VRIT V S+L GE + Sbjct: 419 FMCDSTPPSGSYIDVRITQVFPSSLVGEAI 448 >gi|293376437|ref|ZP_06622669.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Turicibacter sanguinis PC909] gi|325845044|ref|ZP_08168360.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Turicibacter sp. HGF1] gi|292644946|gb|EFF63024.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Turicibacter sanguinis PC909] gi|325488920|gb|EGC91313.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Turicibacter sp. HGF1] Length = 502 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 174/447 (38%), Positives = 269/447 (60%), Gaps = 13/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ +++YGCQMN +DS + + GY + + ++ADLI+LNTC IRE A +V+ L Sbjct: 60 KKYLIQTYGCQMNEHDSEAIIGIAEELGYTKATTQEEADLIILNTCAIRENAENRVFGEL 119 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 GR++ LK + DL++ V GC++Q E +I+ + V++V G YRLPE + Sbjct: 120 GRLKRLKRT----NPDLILGVCGCMSQEEKVVNQIMEKYQYVDLVFGTHNIYRLPEYIHN 175 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A GK V +S E + + + R+ + A++ I GCD+FCT+C+VPYTRG E Sbjct: 176 ALMGKERVIEVWSQEGEI----VENMPRTRQGSIKAWVNIMYGCDEFCTYCIVPYTRGKE 231 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR ++ E + L + G E+TLLGQNVNA+ GK + TF DLL L++I L R Sbjct: 232 RSRLPEDIIAEIKHLAEEGYQEVTLLGQNVNAY-GKDFKDREYTFGDLLDDLNKID-LPR 289 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHPRD I+ LM ++HLPVQSG++ +LK MNR++T Y Q++ + Sbjct: 290 IRFTTSHPRDFDAKTIQTLAKRGNLMEHIHLPVQSGNNEVLKRMNRKYTREMYLQLVRDL 349 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + P ++I++D IVGFPGET++ F+ T+ LV+++GY AF+F +SPR GTP + M + V Sbjct: 350 KEAIPGVSITTDIIVGFPGETEEQFQDTLSLVEEVGYEGAFTFIFSPREGTPAARMEDNV 409 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441 E K +RL L + + + N GQ+++VL+E K ++ L G + + V Sbjct: 410 SEADKKDRLNRLNEAINRGFRNGNKRFEGQVVDVLVEGTSKNDETVLAGYTRHNKLVNFK 469 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + IG I+KV+IT+ K L GE+V Sbjct: 470 ADESTIGKIVKVKITEAKTWHLAGEMV 496 >gi|308173664|ref|YP_003920369.1| tRNA modification protein [Bacillus amyloliquefaciens DSM 7] gi|307606528|emb|CBI42899.1| putative conserved AdoMet radical enzyme for tRNA modification [Bacillus amyloliquefaciens DSM 7] gi|328553404|gb|AEB23896.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus amyloliquefaciens TA208] gi|328911804|gb|AEB63400.1| putative AdoMet radical enzyme for tRNA modification [Bacillus amyloliquefaciens LL3] Length = 509 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 178/447 (39%), Positives = 261/447 (58%), Gaps = 19/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE NS+DDA++I+LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK K DL++ V GC++Q E IL++ P V+++ G +RLPELL Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V G + ++ I GCDKFCT+C+VPYTRG Sbjct: 182 AYLSKEMVIEVWSKEGDVIENLPKVRNG-----KIKGWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS--DLLYSLSEIKG 259 E SR +++ E R+L G EITLLGQNVNA+ G D E T+ DL+ L +I Sbjct: 237 ERSRRPEEIIQEVRRLASEGYKEITLLGQNVNAY---GKDFEDITYGLGDLMDELRKID- 292 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+TTSHPRD D LI+ L+ ++HLPVQSGS +LK M R++ Y +++ Sbjct: 293 IPRIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELV 352 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +I++ P+ ++++D IVGFP ETD+ F T+ L ++ + A++F YSPR GTP + M Sbjct: 353 GKIKAAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMK 412 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438 + V VK ERL L ++E G+ +EVL+E K L G + + V Sbjct: 413 DNVPMRVKKERLQRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLV 472 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465 IG I++V+I K +L G Sbjct: 473 NFKGPKDAIGKIVRVKIEQAKTWSLDG 499 >gi|239826699|ref|YP_002949323.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus sp. WCH70] gi|239806992|gb|ACS24057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. WCH70] Length = 523 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 179/448 (39%), Positives = 263/448 (58%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE + +DA++I+LNTC IRE A KV+ + Sbjct: 80 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEI 139 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DLL+ V GC++Q E +IL++ V+++ G +RLP +L Sbjct: 140 GHLKPLKQN----NPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPYILHE 195 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 196 AYMSKEMVVEVWSKEGDVIENLPKA-----RRGNIKAWVNIMYGCDKFCTYCIVPYTRGK 250 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L G EITLLGQNVNA+ GK K DL+ L +I + Sbjct: 251 ERSRRPEDIIQEVRHLAAQGYKEITLLGQNVNAY-GKDFTDMKYGLGDLMDELRKI-DIP 308 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS ILK M R++T EY +++ + Sbjct: 309 RIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKLMGRKYTREEYLELVRK 368 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ PD+A+++D IVGFP ET++ F T+ L ++ + A++F YSPR GTP + M++ Sbjct: 369 IKEAIPDVALTTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMVDN 428 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + E G+++EVL+E K L G + + V Sbjct: 429 VPMEVKKERLQRLNALVNEISARKMKEYEGKVVEVLVEGESKNNPDVLAGYTRKNKLVNF 488 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++KVRIT+ K TL GE+V Sbjct: 489 IGPKSAIGKLVKVRITEAKTWTLNGEMV 516 >gi|282901705|ref|ZP_06309621.1| tRNA-i(6)A37 modification enzyme MiaB [Cylindrospermopsis raciborskii CS-505] gi|281193468|gb|EFA68449.1| tRNA-i(6)A37 modification enzyme MiaB [Cylindrospermopsis raciborskii CS-505] Length = 447 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 181/456 (39%), Positives = 279/456 (61%), Gaps = 23/456 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+R+ + ++GCQMN DS RM + G+E + +A+LIV NTC IR+ A +KVYS Sbjct: 4 LPRRYHITTFGCQMNKADSERMAGILEDMGFEWSENPHNANLIVYNTCTIRDNAEQKVYS 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +LGR + R + DL +VVAGCVAQ EG+ +LRR P +++V+GPQ RL +LL+ Sbjct: 64 YLGR----QAKRKHQEPDLTLVVAGCVAQQEGQALLRRVPELDLVMGPQYANRLKDLLDS 119 Query: 143 ARFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G +VV T+ + +ED + R VTA++ + GC++ CT+CVVP RG Sbjct: 120 VFAGNQVVATEEVHILEDITQP--------RRDSQVTAWVNLIYGCNERCTYCVVPNVRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSL 254 +E SR+ + +E L G EITLLGQN++A+ G+ L G TF+DLLY + Sbjct: 172 VEQSRTPEAIREEMEILGQQGYREITLLGQNIDAY-GRDLPGSTAEGRHLHTFTDLLYYV 230 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 ++ G+ R+R+ TSHPR ++ LIKA +L + + H+P QSG + ILK+M+R +T + Sbjct: 231 HDVPGIERIRFATSHPRYFTERLIKACAELPKICEHFHIPFQSGDNEILKAMSRGYTQEK 290 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 YR+II+ IRS PD +IS+D IVGFPGET+ F T+ LVD IG+ + YSPR GTP Sbjct: 291 YRRIINTIRSYMPDASISADAIVGFPGETEIQFENTLQLVDDIGFDHLNTAAYSPRPGTP 350 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP 433 + Q+ E +K++RL L + + + +G++ EVL+E ++ K++ +++GR+ Sbjct: 351 AALWDNQLSEEIKSDRLQRLNHLVNVKAAQRSQRYLGRMEEVLVEDQNPKDQSQVMGRTR 410 Query: 434 WLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + N G +++V+I +V+ +L GELV Sbjct: 411 GNRLAFFQGDINQLRGKMVRVQIQEVRAFSLSGELV 446 >gi|289549019|ref|YP_003474007.1| RNA modification enzyme, MiaB family [Thermocrinis albus DSM 14484] gi|289182636|gb|ADC89880.1| RNA modification enzyme, MiaB family [Thermocrinis albus DSM 14484] Length = 437 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 182/447 (40%), Positives = 279/447 (62%), Gaps = 26/447 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++++K++GCQMN DS R++ + GY+ ++ ++ADLI++NTC IREK +KVYS LG Sbjct: 2 KYYIKTFGCQMNFNDSERIKGILHHMGYKPADTPEEADLILINTCTIREKPDQKVYSHLG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K R ++++ V GC+AQ G +++ ++P+V+++ + LPEL+++A+ Sbjct: 62 EYKKIKEKR----PEVIIGVCGCLAQRMGWQLVEKAPVVDLMFSSFNIHHLPELIQQAQA 117 Query: 146 GKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G R +++ ED+ V R A++T+ +GCDK CT+CVVP TRG + Sbjct: 118 GYRAIAILEEPPEDEDRMWEFKTV-----RDNAYCAYVTVMKGCDKHCTYCVVPKTRGRQ 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SRSL +++E R L+ +GV EI LLGQNV AW G+ ++ FS+LLY ++EI G+ R Sbjct: 173 RSRSLESILEEVRWLVADGVKEIHLLGQNVTAW-GQDIN---IHFSELLYRVAEIPGVER 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TT HP DM + + KA GD+ + +LHLPVQSGS+RILK M R +T EY + I + Sbjct: 229 IRFTTGHPSDMDERIAKAMGDIPQICEHLHLPVQSGSNRILKLMERNYTKEEYLEKIHML 288 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P I S+D IVGFP ET++DF T+D++ K+ + Q FSFKYSPR TP + M Q+ Sbjct: 289 REYVPGITFSTDIIVGFPTETEEDFEETLDVLRKVRFEQVFSFKYSPRPDTPAAYMEGQI 348 Query: 383 DENVKAE---RLLCLQKK-LREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 + VK + RLL LQK+ L E S+ G + EVL+E + GKLVGR+ + V Sbjct: 349 PDEVKTDRMSRLLSLQKEILAEIARSYE----GTVQEVLLESW--QDGKLVGRTRTNRWV 402 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465 + +G ++VRIT + ++ G Sbjct: 403 SVEGSEDMLGKTVRVRITRSQPFSMEG 429 >gi|153941109|ref|YP_001391056.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum F str. Langeland] gi|229890488|sp|A7GE46|MIAB_CLOBL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|152937005|gb|ABS42503.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum F str. Langeland] gi|295319106|gb|ADF99483.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum F str. 230613] Length = 450 Score = 315 bits (807), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 176/444 (39%), Positives = 266/444 (59%), Gaps = 15/444 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF++++GCQMN DS ++ M +GY R ++AD+I+ NTC +RE A KVY LG Sbjct: 16 FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAELKVYGNLGI 75 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ LK+ + +L++ V GC+ Q +G E I ++ P V++++G + P L + Sbjct: 76 LKGLKS----KNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131 Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 V ED SI++ +RK + AF+TI GC+ FCT+C+VPY RG E Sbjct: 132 KKDTSVLKIQEKED-----SIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGRER 186 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR+ + E +KLI G EITLLGQNVN++ GK L+ TF++LL ++ I+GL R+ Sbjct: 187 SRTPENIEAEIKKLISEGYKEITLLGQNVNSY-GKDLEP-NVTFAELLKRVNNIEGLERV 244 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D++D +I+A D L +HLPVQSGS ILK MNR + +Y ++ +I+ Sbjct: 245 RFMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIK 304 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P++A+S+D IVGFPGET+ DF T+ LV ++ Y AF+F YS R GTP + +QV Sbjct: 305 KLIPNVALSTDIIVGFPGETEKDFEETLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVP 364 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442 E+VK +R L + + E N A G+I EVL+E K ++ KL+GR+ + V Sbjct: 365 EDVKHKRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIG 424 Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466 +IG+ + V+I +L GE Sbjct: 425 DKDSIGEFVNVKIIKANSFSLTGE 448 >gi|154686118|ref|YP_001421279.1| YmcB [Bacillus amyloliquefaciens FZB42] gi|229890448|sp|A7Z4X2|MIAB_BACA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|154351969|gb|ABS74048.1| YmcB [Bacillus amyloliquefaciens FZB42] Length = 509 Score = 315 bits (807), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 176/445 (39%), Positives = 259/445 (58%), Gaps = 15/445 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE NS+DDA++I+LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK K DL++ V GC++Q E IL++ P V+++ G +RLPELL Sbjct: 126 GHLKALK----KNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V G + ++ I GCDKFCT+C+VPYTRG Sbjct: 182 AYLSKEMVIEVWSKEGDVIENLPKVRNG-----KIKGWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++ E R+L G EITLLGQNVNA+ GK + DL+ L +I + Sbjct: 237 ERSRRPEEIIQEVRRLASEGYKEITLLGQNVNAY-GKDFEDMTYGLGDLMDELRKID-IP 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS +LK M R++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ P+ ++++D IVGFP ETD+ F T+ L ++ + A++F YSPR GTP + M + Sbjct: 355 IKAAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L ++E G+ +EVL+E K L G + + V Sbjct: 415 VPMRVKKERLQRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465 IG I++V+I K +L G Sbjct: 475 KGPKDAIGKIVRVKIEQAKTWSLDG 499 >gi|282895989|ref|ZP_06304020.1| tRNA-i(6)A37 modification enzyme MiaB [Raphidiopsis brookii D9] gi|281199099|gb|EFA73969.1| tRNA-i(6)A37 modification enzyme MiaB [Raphidiopsis brookii D9] Length = 447 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 181/456 (39%), Positives = 279/456 (61%), Gaps = 23/456 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+R+ + ++GCQMN DS RM + G+E + +A+LIV NTC IR+ A +KVYS Sbjct: 4 LPRRYHITTFGCQMNKADSERMAGILEDMGFEWSENPQNANLIVYNTCTIRDNAEQKVYS 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +LGR + R + DL +VVAGCVAQ EG+ +LRR P +++V+GPQ RL +LL+ Sbjct: 64 YLGR----QAKRKHQEPDLTLVVAGCVAQQEGQALLRRVPELDLVMGPQYANRLQDLLDS 119 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRG 200 G +VV T E + I++ +R VTA++ + GC++ CT+CVVP RG Sbjct: 120 VFAGNQVVAT--------EEVHILEDITQPRRDSRVTAWVNVIYGCNERCTYCVVPNVRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSL 254 +E SR+ + E L G EITLLGQN++A+ G+ L G TF+DLLY + Sbjct: 172 VEQSRTPEAIRGEMEILGQQGYREITLLGQNIDAY-GRDLPGSTTEGRNLHTFTDLLYYV 230 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 ++ G+ R+R+ TSHPR ++ LIKA +L + + H+P QSG + ILK+M+R +T + Sbjct: 231 HDVPGIERIRFATSHPRYFTERLIKACAELPKICEHFHIPFQSGDNEILKAMSRGYTQEK 290 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 YR+II+ IRS PD +IS+D IVGFPGET+ F+ T+ LVD IG+ + YSPR GTP Sbjct: 291 YRRIINTIRSYMPDASISADAIVGFPGETEIQFQNTLQLVDDIGFDHLNTAAYSPRPGTP 350 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP 433 + Q+ E +K++RL L + + + +G++ EVL+E ++ K++ +++GR+ Sbjct: 351 AALWDNQLSEEIKSDRLQRLNHLVNVKAAQRSQRYLGRMEEVLVEDQNPKDQSQVMGRTR 410 Query: 434 WLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + N G +++V+I +V+ +L GELV Sbjct: 411 GNRLAFFQGDINQLRGRMVRVKIQEVRAFSLSGELV 446 >gi|23099083|ref|NP_692549.1| hypothetical protein OB1628 [Oceanobacillus iheyensis HTE831] gi|81746368|sp|Q8EQR4|MIAB_OCEIH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|22777311|dbj|BAC13584.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 519 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 173/448 (38%), Positives = 267/448 (59%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F +++YGCQMN +D+ M + GYE ++AD+I+LNTC IRE A KV+ + Sbjct: 76 KKFLIRTYGCQMNEHDTEVMAGILSEMGYESTTVTEEADIILLNTCAIRENAENKVFGEI 135 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK E DL++ V GC++Q E + IL++ ++++ G +RLP L++ Sbjct: 136 GHLKPLK----LENPDLIIGVCGCMSQEESVVDRILQKHQHIDLIFGTHNIHRLPHLVKE 191 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A FGK ++ +S E D E L RK + A++ I GCDKFCT+C+VP TRG Sbjct: 192 ALFGKEMIVEVWSKEGDIIENLPKA-----RKGKIKAWVNIMYGCDKFCTYCIVPMTRGK 246 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L+ G E+TLLGQNVNA+ GK + + DL+ + +I + Sbjct: 247 ERSRRPKDIIQEVRHLVAQGYQEVTLLGQNVNAY-GKDFEDIEYGLGDLMNDIHKI-DIP 304 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS ILK MNR++T EY +++ + Sbjct: 305 RVRFTTSHPRDFDDRLIEVLAQGGNLLDHIHLPVQSGSSEILKKMNRKYTREEYLELVRK 364 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR P+ +++D IVGFP ET++ F TM LV+++G+ A++F YSPR GTP + + Sbjct: 365 IRIAMPNATLTTDIIVGFPNETEEQFEETMTLVEEVGFEAAYTFIYSPREGTPAARKKDD 424 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V E VK +RL L + + +Q + G+ ++VL+E K+ + L G + + V Sbjct: 425 VPEEVKKQRLYRLNELVNKQSAASMKDYAGKKVKVLVEGESKKDPEVLAGYTEKNKLVNF 484 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +IG I++V IT+ K +L G +V Sbjct: 485 KGPKSSIGKIVEVEITETKTWSLNGVMV 512 >gi|114566504|ref|YP_753658.1| 2-methylthioadenine synthetase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318431|sp|Q0AYB7|MIAB_SYNWW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|114337439|gb|ABI68287.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 445 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 176/447 (39%), Positives = 271/447 (60%), Gaps = 15/447 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P ++ + +YGCQMNV DS + + G+ + + +ADLIV NTC +R A KVY Sbjct: 8 PLKYRILTYGCQMNVRDSETIAGLLEGSGFNQAEDLSEADLIVFNTCSVRHSAENKVYGK 67 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LG I +LK R +LL+ GC+AQ E + L++ V+VV G + LP L+ R Sbjct: 68 LGEIASLKKKR----PELLIAFGGCMAQLPEVRQKLKKRG-VDVVFGTHNIHELPYLIAR 122 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A+ + V + E SIV+ + RK G++AF+ I GC+ FC++C+VPYTRG Sbjct: 123 AKEKRSPVFEVWEKEG-----SIVEPLPSCRKPGLSAFVNIMFGCNNFCSYCIVPYTRGR 177 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E +L G E+TLLGQNVN++ G+GL GEK F+DLLY + + G+ Sbjct: 178 ERSRKADDIIRELEELAAAGYKEVTLLGQNVNSY-GRGL-GEKIEFADLLYRANSVAGIE 235 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP+D+SD L++A + + L ++H P+Q+GS+RIL+ MNR ++ Y ++++R Sbjct: 236 RIRFTTSHPKDVSDRLLQAIAECEKLCEHIHAPLQAGSNRILQRMNRNYSREHYLKLVER 295 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P ++I+SD IVGFPGET++DF T+D+V+++ + AF+F YS R GT + + EQ Sbjct: 296 MRHYVPGVSITSDLIVGFPGETEEDFLETLDMVERVRFDAAFTFLYSQRSGTRAAELAEQ 355 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 + K +RL L ++ + N G I EVL+E K KL R+ + V+ Sbjct: 356 IPLEEKKQRLERLNRRQYQIATEINQELQGSIQEVLVEGPSKTNPQKLTSRTRSNRIVIF 415 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467 + IG +I V+IT+ K +L+GE+ Sbjct: 416 SGGKDLIGRLINVKITEAKTFSLFGEI 442 >gi|146297053|ref|YP_001180824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor saccharolyticus DSM 8903] gi|229890495|sp|A4XL48|MIAB_CALS8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|145410629|gb|ABP67633.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 471 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 277/446 (62%), Gaps = 16/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + + +YGCQMNV+DS ++ M + GY ++++ADLI+ NTC +RE A +VY +G Sbjct: 38 YHIITYGCQMNVHDSEKLAGMLNAMGYVETQNLEEADLIIFNTCAVREHAESRVYGNIGP 97 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ LK+ + +L++ V GC+ Q +++ + P ++++ G ++ ++ P+LL +A Sbjct: 98 LKRLKDKK----PELIIGVCGCMPQQLEVAQKLAKVFPFLDIIFGTKSLHKFPQLLYKAI 153 Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K+ V ED +V+G R+ GV+AF+ I GC+ FC++C+VPY RG E Sbjct: 154 TTKKTVIDVAEDED-----VVVEGIPTARREGVSAFVNIIYGCNNFCSYCIVPYVRGRER 208 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVR 262 SR +++ E ++L NGV E+TLLGQNVN++ GK L DG F LL ++ I+G+ R Sbjct: 209 SRRPEEIIFEIQQLAANGVKEVTLLGQNVNSY-GKDLPDG--IPFYKLLEKVNAIEGIER 265 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHP+D+SD LI A DL+ + ++HLPVQSGS RIL+ MNR +T +Y ++++++ Sbjct: 266 IRFVTSHPKDLSDELIFAMRDLEKVCEHIHLPVQSGSTRILRQMNRHYTKEDYLRLVEKL 325 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + PDIAI++D IVGFPGET++DF T+D+V K+ + A++F YS R GT + M QV Sbjct: 326 KENIPDIAITTDIIVGFPGETEEDFEDTLDVVRKVEFDSAYTFIYSKRKGTKAAQMPNQV 385 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 + VK ER L K + E + N +G++ E+LI+ + K L GR+ + V + Sbjct: 386 PDEVKHERFQRLVKLVEEIALKKNQQMLGKVCEILIDGYSKRNNLLEGRTRTNKVVNVKC 445 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 + + + V+I + LYGE++ Sbjct: 446 SDEFMYKFVNVKILEASRHWLYGEVI 471 >gi|218248044|ref|YP_002373415.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp. PCC 8801] gi|229890509|sp|B7JZ48|MIAB_CYAP8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|218168522|gb|ACK67259.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8801] Length = 451 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 180/454 (39%), Positives = 279/454 (61%), Gaps = 23/454 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + + ++GCQMN DS RM + + G+ + ADLI+ NTC IR+ A +KVYS+L Sbjct: 11 RHYHITTFGCQMNKADSERMAGILENMGFIWSEDPNQADLILYNTCTIRDNAEQKVYSYL 70 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + R E DL ++VAGCVAQ EGE+ILRR P +++V+GPQ RL +LL++ Sbjct: 71 GR----QAKRKHENPDLTLIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVF 126 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +VV T E + I++ +R +TA++ + GC++ C++CVVP RG+E Sbjct: 127 DGNQVVAT--------EPIHIIEDITKPRRDSTITAWVNVIYGCNERCSYCVVPNVRGVE 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256 SR+ ++ E L G E+TLLGQN++A+ G+ L G + T +DLLY++ + Sbjct: 179 QSRTPEAILAEMELLGKQGYKEVTLLGQNIDAY-GRDLPGVTESGRHQHTLTDLLYTVHD 237 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + G+ R+R+ TSHPR ++ LI A +L + + H+P QSG + ILK+M R +T +YR Sbjct: 238 VVGIERIRFATSHPRYFTERLIAACQELSKVCEHFHIPFQSGDNDILKAMKRGYTHEKYR 297 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 QIID+IR PD +IS+D IVGFPGET++ F T+ LV+ IG+ Q + YSPR GTP + Sbjct: 298 QIIDKIRDYMPDASISADAIVGFPGETEEQFENTLKLVEDIGFDQLNTAAYSPRPGTPAA 357 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWL 435 Q+ E VK++RL L + ++ + +G+I EVL+E ++ K+ +++GR+ Sbjct: 358 LWDNQLSEEVKSDRLQRLNHLVAQKAAERSQRYLGRIEEVLVEDQNPKDSTQVMGRTRGN 417 Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + N G +IKV+IT+V+ +L GE+V Sbjct: 418 RLTFFKGDINQLKGRLIKVKITEVRAFSLTGEIV 451 >gi|302874905|ref|YP_003843538.1| RNA modification enzyme, MiaB family [Clostridium cellulovorans 743B] gi|307690475|ref|ZP_07632921.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium cellulovorans 743B] gi|302577762|gb|ADL51774.1| RNA modification enzyme, MiaB family [Clostridium cellulovorans 743B] Length = 452 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 165/445 (37%), Positives = 274/445 (61%), Gaps = 17/445 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + ++GCQMN DS ++ + GYE+ ++A +I+ NTC +RE A KV+ +G Sbjct: 18 FCITTFGCQMNEEDSEKLSGVLMEMGYEKTEKREEASIIIFNTCAVRENAELKVFGNIGA 77 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ +K ++ L++ + GC+ Q +G EE++++ P V+++ G + PE L + Sbjct: 78 LKKMK----EKNPSLIIGICGCMMQQKGMAEEVIKKYPFVDIIFGTHNSHMFPEYLNSVK 133 Query: 145 -FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 GK VV+ + DK + IV+G +R + AF+TI GC+ FCT+C+VPY RG E Sbjct: 134 QHGKSVVE----ILDK--EVGIVEGLPIDRLSSIKAFVTIMYGCNNFCTYCIVPYVRGRE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR +++E ++L+ G E+TLLGQNVN++ GKGL+ E+ F+ LL ++EI+GL R Sbjct: 188 RSRKPEDIINEIKELVKVGYKEVTLLGQNVNSY-GKGLE-EEIDFAKLLRLVNEIEGLER 245 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +++ +SHP+D++D +IKA + D + +HLPVQ+GS +LK MNR +T +Y ++ RI Sbjct: 246 IKFMSSHPKDLTDDVIKAIAECDKVCEQIHLPVQAGSTSLLKRMNRHYTREQYLDLVKRI 305 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + P++A+++D I+GFPGET++D + LV ++ Y AF+F YSPR GTP + + +Q+ Sbjct: 306 KENIPNVALTTDLIIGFPGETEEDVEEVISLVKEVRYDSAFTFLYSPRKGTPAAELPDQI 365 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441 E++K R L +L + + G+++EVL+E K + KL+GR+ + V Sbjct: 366 PEDIKHRRFNALVDELNKIGAEISKEYDGKVVEVLVEGPSKNDDNKLMGRTRTGKLVNFT 425 Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466 NIG +I V+IT + +L GE Sbjct: 426 GNPENIGKLINVKITKTQAFSLLGE 450 >gi|291287753|ref|YP_003504569.1| RNA modification enzyme, MiaB family [Denitrovibrio acetiphilus DSM 12809] gi|290884913|gb|ADD68613.1| RNA modification enzyme, MiaB family [Denitrovibrio acetiphilus DSM 12809] Length = 435 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 175/457 (38%), Positives = 279/457 (61%), Gaps = 36/457 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++F+ + GCQMN YDSLR+ +F G+ M++ D +++NTC +REK K S + Sbjct: 2 RKYFIHTMGCQMNEYDSLRIAAVFDKIGFTEAEEMEEGDYLIVNTCSVREKPQHKAESAI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR R +K R ++ + GCVAQ EGE +L+ + ++ VVG +RL E++ Sbjct: 62 GRFRQIKRRR----PEVKIGFCGCVAQQEGENLLKTNKDIDFVVGTDGLHRLEEVVAHVE 117 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGG-----YNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G+R+ DT + +GG +NR+ V++F+TI +GC+ FC++C+VPY R Sbjct: 118 AGERLSDT-----------QVNEGGLEIDIFNREVSVSSFVTIMKGCNNFCSYCIVPYVR 166 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR S+++DE + L D G EITLLGQNVN++ G L + +F +LL +S+++G Sbjct: 167 GREKSREQSEIIDEIKYLADKGAREITLLGQNVNSY-GTALT-DPVSFPELLDKVSDVEG 224 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+ TSHP+D S+ LI D + YLHLP+QSGS+ +L+ MNR++T Y++ + Sbjct: 225 IKRIRFVTSHPKDFSNELIDVMRGNDKICEYLHLPLQSGSNAVLQKMNRKYTYDHYKERV 284 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R + + PD+A+SSDFIVGFPGET++DF++TM +++I Y ++F YS R GT + Sbjct: 285 LRAKEMIPDLALSSDFIVGFPGETEEDFQSTMKALEEIRYDMIYAFNYSTRPGTKAESFN 344 Query: 380 EQVDENVKAERLLCL---QKK-LREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPW 434 + V VK RL L QK+ + E ++ D ++EV++E K+ G+ GR+ Sbjct: 345 DDVPLEVKKMRLAKLLDAQKRIIAENSAAYQDL----VVEVMVEGESKKGAGQYSGRN-- 398 Query: 435 LQSVVLNSKNHNI---GDIIKVRITDVKISTLYGELV 468 Q+ V+N + I GD + V+IT+ + ++L GE V Sbjct: 399 RQNRVVNFSSETILSSGDFVNVKITEPRPNSLLGERV 435 >gi|298529986|ref|ZP_07017388.1| RNA modification enzyme, MiaB family [Desulfonatronospira thiodismutans ASO3-1] gi|298509360|gb|EFI33264.1| RNA modification enzyme, MiaB family [Desulfonatronospira thiodismutans ASO3-1] Length = 443 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 173/450 (38%), Positives = 268/450 (59%), Gaps = 17/450 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMNV DSL ++ + G + + ++AD+ ++NTC +REK +K+YS LGR Sbjct: 3 YYIFTFGCQMNVSDSLWLDQALQALGLKPCSREEEADIFLINTCSVREKPEQKIYSLLGR 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + +E + V GCVAQ G L R V +V G +PE ++R Sbjct: 63 LYEY----TREKPHVFAGVGGCVAQQVGRRFLERFSFVRLVFGTDGLVMVPEAIKRLLKD 118 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + + +D + GY ++ V AF+ I +GCD FC +C+VPYTRG + SR Sbjct: 119 RHLKTSLLDFQDHYPERK----GYQPEKAPVQAFVNIMQGCDNFCAYCIVPYTRGRQKSR 174 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S +++ E L+ G EITLLGQNVN++ G+ +G FS+LL S++ + GL RLR+ Sbjct: 175 SSREILQECAGLVARGCREITLLGQNVNSF-GQDKEGRDIPFSELLRSVAALPGLERLRF 233 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTSHP+D+ + +I+A G+L L P+LHLP+QSGSD++L SM R++ + +Y +I++++RS Sbjct: 234 TTSHPKDIDEEVIQAFGELPALCPHLHLPLQSGSDQVLSSMGRKYNSDDYLRIVEKLRSS 293 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDI++++D IVGFPGETD DF TMD+V K+G+ +FSFKYS R G ++M ++D+ Sbjct: 294 CPDISLTTDLIVGFPGETDADFEDTMDIVKKVGFDSSFSFKYSDRPGVRAADMQPKIDDE 353 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-----KLVGRSPW--LQSV 438 K ERL LQ+ E VG+ VL+E K++G GR P L V Sbjct: 354 TKTERLARLQQLQSELTRDRLAGRVGRQELVLVEGRSKKQGPPDTVSWTGRDPGGRLVHV 413 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 L + G++++V I +L GE++ Sbjct: 414 HLPVERDCTGEVLRVTIVRAHKHSLSGEVI 443 >gi|262038865|ref|ZP_06012212.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia goodfellowii F0264] gi|261747116|gb|EEY34608.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia goodfellowii F0264] Length = 441 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 171/446 (38%), Positives = 270/446 (60%), Gaps = 10/446 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + +YGCQMNV +S +M+ M + GYE ++++DL+ LNTC +RE AA KVY L Sbjct: 3 KRATIITYGCQMNVNESAKMKQMLQTMGYEITEDINESDLVFLNTCTVREGAAVKVYGKL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++ +K + G++++ V GC+AQ +E ++++P V++V+G Q R+P++LER Sbjct: 63 GDLKRIKEEK---NGNMIIGVTGCLAQEVRDEFIKKTPYVDLVLGNQNIGRIPDILERIE 119 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ VED+ E VD + + A ++I GC+ +CTFC+VPY RG+E S Sbjct: 120 KGEET--HIVMVEDEDELPKRVDADFGDD--IVASISITYGCNNYCTFCIVPYVRGMERS 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 L +V+ + G EI LGQNVN++ G L E F+ LL ++I+G ++ Sbjct: 176 VPLHEVLRDVEFYTKRGYKEILFLGQNVNSY-GSDLADENDNFATLLNESAKIEGDFWIK 234 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y + HP+D +D +I+A + + LHLP+QSGS +IL +MNR +T E+ Q+ +I+ Sbjct: 235 YVSPHPKDFNDEVIEAIANNSKISRMLHLPLQSGSTKILNAMNRGYTKEEFIQLAKKIKE 294 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PDI +++D IVGFPGETD DF+ TMD+V++IG+ AF F YS R GTP + M EQV+E Sbjct: 295 RIPDIGLTTDIIVGFPGETDKDFQDTMDVVEEIGFENAFMFMYSKRTGTPAATMEEQVNE 354 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSK 443 K ERL L + + + +G++++VL+E ++ + L GR+ + V+ S Sbjct: 355 QTKNERLQQLMRLQNRKAKEESQKYLGKVVKVLVEGPSRKNPEMLTGRTSTHKIVLFRSD 414 Query: 444 NHNI-GDIIKVRITDVKISTLYGELV 468 ++ G + +I + K TLYGELV Sbjct: 415 RKDLKGQFVHTKIYEAKTWTLYGELV 440 >gi|168180374|ref|ZP_02615038.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum NCTC 2916] gi|226949042|ref|YP_002804133.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium botulinum A2 str. Kyoto] gi|182668731|gb|EDT80709.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum NCTC 2916] gi|226843034|gb|ACO85700.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium botulinum A2 str. Kyoto] Length = 450 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 175/443 (39%), Positives = 267/443 (60%), Gaps = 13/443 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF++++GCQMN DS ++ M +GY R ++AD+I+ NTC +RE A KVY LG Sbjct: 16 FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAELKVYGNLGI 75 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ LK+ + +L++ V GC+ Q +G E I ++ P V++++G + P L + Sbjct: 76 LKGLKS----KNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFPNYLNEVK 131 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V +++K E I + +RK + AF+TI GC+ FCT+C+VPY RG E S Sbjct: 132 KKDTSV---LKIQEK-ENSIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGRERS 187 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+ + E +KLI EITLLGQNVN++ GK L+ TF++LL ++ I+GL R+R Sbjct: 188 RTPENIEAEIKKLISEDYKEITLLGQNVNSY-GKDLEP-NVTFAELLKRVNNIEGLERVR 245 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D++D +I+A D L +HLPVQSGS ILK MNR + +Y ++ +I+ Sbjct: 246 FMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSEILKKMNRHYDREKYLDVVSKIKK 305 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P++A+S+D IVGFPGET+ DF T+ LV ++ Y AF+F YS R GTP + +QV E Sbjct: 306 LIPNVALSTDIIVGFPGETEKDFEKTLSLVKEVEYDSAFTFLYSIRKGTPAAKFEDQVPE 365 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443 +VK +R L + L E N A G+I EVL+E K ++ KL+GR+ + V Sbjct: 366 DVKHKRFNRLVEVLNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRTGKLVNFIGD 425 Query: 444 NHNIGDIIKVRITDVKISTLYGE 466 +IG+++ V+I +L GE Sbjct: 426 KDSIGELVNVKIIKANSFSLTGE 448 >gi|116515198|ref|YP_802827.1| hypothetical protein BCc_272 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285406|sp|Q057G5|MIAB_BUCCC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|116257052|gb|ABJ90734.1| bifunctional enzyme involved in thiolation and methylation of tRNA [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 435 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 170/438 (38%), Positives = 272/438 (62%), Gaps = 13/438 (2%) Query: 36 MNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN +DS +E++ Y + +D+++LNTC IREKA EK++ LGR + LK Sbjct: 1 MNEHDSSIIENILKKTNLYIITKKPEISDILILNTCSIREKAQEKLFHQLGRWKKLK--- 57 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTD 153 ++ +L+ V GCVA EG++I +R+ ++++ GPQT ++LP+LL E + +++ Sbjct: 58 -QKNSKILIAVGGCVAVQEGKKIYKRAKFIDIIFGPQTLHKLPKLLIESNKKKSLIINIK 116 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 KF ++ N K+ ++F+TI EGC+K+C+FC+VPYTRG E+SR+ +++ E Sbjct: 117 KKSLKKFN--YTINKNTNIKKKFSSFVTIMEGCNKYCSFCIVPYTRGKEVSRNNKKIISE 174 Query: 214 ARKLIDNGVCEITLLGQNVNAWR-GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 +L GV EITLLGQNVNA++ + + +FSDLLYS+SEI + R+R+ TSHP + Sbjct: 175 IIELSKKGVREITLLGQNVNAYKFSDTFNKKNYSFSDLLYSISEIPRIDRIRFITSHPVE 234 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 ++ +I+A+ + L +LHLPVQSGS++ILK M R +T +Y I+++I+ +RP I IS Sbjct: 235 FNNNIIEAYKKIPKLTNFLHLPVQSGSNKILKLMKRGYTIEKYENIVNKIKKIRPKINIS 294 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 SDFI+GFPGET +DF+ T+ + KI + ++SF YS R T S + + V K +RL Sbjct: 295 SDFIIGFPGETKEDFQKTIYFISKINFDTSYSFIYSKRPRTRASKLEDNVTMEEKKKRLY 354 Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDII 451 +Q+K+ +Q + QI VL+E K +L GR+ ++V IG+ I Sbjct: 355 KVQQKINQQAFQWKRRSTEQI--VLVEGISKNNIQELYGRTENNRTVFFEGNPKFIGNFI 412 Query: 452 KVRITDVKIST-LYGELV 468 K++I +K +T L G+++ Sbjct: 413 KLKIISIKYNTFLKGKII 430 >gi|283778559|ref|YP_003369314.1| RNA modification enzyme, MiaB family [Pirellula staleyi DSM 6068] gi|283437012|gb|ADB15454.1| RNA modification enzyme, MiaB family [Pirellula staleyi DSM 6068] Length = 475 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 187/469 (39%), Positives = 276/469 (58%), Gaps = 33/469 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R ++++ GCQMNV DS + +GYE AD+++ NTC +RE+A K YS L Sbjct: 2 KRLYIETVGCQMNVLDSEMVVASLRKRGYELERDEASADVLLFNTCSVREQAENKTYSAL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-- 142 GR+R+LK K D ++ V GC+AQ + + + R+P V++VVGP R+P+L+++ Sbjct: 62 GRLRSLK----KANPDKIIGVMGCMAQKDQQLVFDRAPYVDLVVGPGQLSRIPDLIDQVA 117 Query: 143 ARFGKRVV-------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 A GK++ + V E + R A+L IQ GCDKFCT+C+V Sbjct: 118 AGHGKQMAVSLGRKDAANEEVRRSHETFDPLRDPTMRPTPFQAYLRIQIGCDKFCTYCIV 177 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSL 254 P TRG E R Q+ DEAR L D G EITL+GQ VN++R K GE T SDLL +L Sbjct: 178 PSTRGPEQGRPPQQIYDEARILADQGCKEITLIGQTVNSYRYKS--GESTTRLSDLLVNL 235 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 SEI G+ RL++ T++P+DM++ L+ A DL + PYLH+P QSGS+ +L M R ++ + Sbjct: 236 SEIDGIKRLKFVTNYPKDMTNDLLAAVRDLPKVSPYLHVPAQSGSNTVLTRMKRGYSVED 295 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 YR+++ RI + PD A++SDFIVGF GET+ DF AT LV + +F FKYS R GT Sbjct: 296 YREMMARIYEMVPDAAVTSDFIVGFCGETEADFEATKQLVSDCRFKNSFIFKYSERPGTK 355 Query: 375 GSNML-EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE-------KHGK 423 G+ +L + + +VK R LL LQ ++ EQ+ N +GQ +EVL+E G+ Sbjct: 356 GAELLADDIPFDVKHRRNNELLELQNRISEQE---NQKFLGQRVEVLVEGPSSRAVSRGE 412 Query: 424 EKGKLV---GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 +G LV GR+P + VV + G+++++ I + TL+G +V Sbjct: 413 VEGDLVQLTGRTPCDRIVVFDGNRRLTGELVQLAIYECAPHTLFGAIVT 461 >gi|251797360|ref|YP_003012091.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Paenibacillus sp. JDR-2] gi|247544986|gb|ACT02005.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. JDR-2] Length = 525 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 179/451 (39%), Positives = 269/451 (59%), Gaps = 15/451 (3%) Query: 20 QCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78 Q I +F+ +++YGCQMN +D+ M+ MF GY + AD+I+LNTC IRE A + Sbjct: 76 QTIGKGKFYLIQTYGCQMNEHDTEVMKGMFEEMGYTGTDDRLQADVILLNTCAIRENAED 135 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRL 136 KV+ LG ++ LK + +LL+ V GC++Q E +IL++ V+++ G +RL Sbjct: 136 KVFGELGHLKTLKLQK----PELLLGVCGCMSQEESVVGKILQKHAFVDMIFGTHNIHRL 191 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 P LL+ A F K +V +S E I++ ++ G+ A++ I GCDKFCT+C+VP Sbjct: 192 PHLLQNAYFSKEMVVEVWSKEG-----DIIENMPKKRDGMRAWVNIMYGCDKFCTYCIVP 246 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 YTRG E SR V+ E R+L G EITLLGQNVNA+ GK + F DL++ +S+ Sbjct: 247 YTRGKERSRRPEDVIAEVRELARQGFKEITLLGQNVNAY-GKDFEDISYRFGDLMHDISK 305 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I + R+R+TTSHPRD D LI+ L+ ++HLP+QSGS +LK M+R+++ + Sbjct: 306 ID-IPRIRFTTSHPRDFDDHLIEVLAQGGNLVEHIHLPIQSGSTEVLKRMSRKYSREQIF 364 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++ +I+ P++++S+D IVGFPGETD+ F TM LV +IG+ A++F YSPR GTP + Sbjct: 365 ELAAKIKRAIPNVSLSTDIIVGFPGETDEQFEDTMTLVRQIGFDFAYTFIYSPREGTPAA 424 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWL 435 M + V +K +RL L + + E N+ G+I+EVL+E K L GR+ Sbjct: 425 GMEDNVPMELKKKRLKRLNELMAELGRRGNERMEGEIVEVLVEGESKNNPNILAGRTRTN 484 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 + V L IG I VR+T+ K + E Sbjct: 485 KLVHLEGPKEWIGQFIHVRVTEAKTWYIKAE 515 >gi|254411897|ref|ZP_05025673.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Microcoleus chthonoplastes PCC 7420] gi|196181619|gb|EDX76607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Microcoleus chthonoplastes PCC 7420] Length = 451 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 181/456 (39%), Positives = 276/456 (60%), Gaps = 23/456 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+R+ + ++GCQMN DS RM + G+E +DA LI+ NTC IR+ A +KVYS+ Sbjct: 5 PRRYHITTFGCQMNKADSERMAGILEDMGFEWSEDPNDASLILYNTCTIRDNAEQKVYSY 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + R +E DL ++VAGCVAQ EGE +LRR P +++V+GPQ RL +LLE+ Sbjct: 65 LGR----QAKRKQEQADLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLEQV 120 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G ++V T E + IV+ +R VTA++ + GC++ CT+CVVP RG+ Sbjct: 121 GDGNQIVAT--------EPIHIVEDITKPRRDSTVTAWVNVIYGCNERCTYCVVPNVRGV 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLS 255 E SR+ + E +L G EITLLGQN++A+ G+ L G + T +DLLY + Sbjct: 173 EQSRTPEAIRAEMAELGQQGYKEITLLGQNIDAY-GRDLPGVTESGRHQHTLTDLLYYVH 231 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 ++ + R+R+ TSHPR ++ LI+A +L + + H+P QSG + ILK+M R +T +Y Sbjct: 232 DVPSIERIRFATSHPRYFTERLIRACKELPKVCEHFHIPFQSGDNDILKAMARGYTQEKY 291 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 R+IID IR PD +IS+D IVGFPGET+ F T+ LV+ I + Q + YSPR GTP Sbjct: 292 RRIIDTIRDYMPDASISADAIVGFPGETEAQFENTLKLVEDIEFDQLNTAAYSPRPGTPA 351 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPW 434 + Q+ E VK++RL L + + + + G+I EVL+E ++ K+ +++GR+ Sbjct: 352 ALWENQLSEEVKSDRLQRLNHLVSIKAAARSQRYFGRIEEVLVEDQNPKDSSQVMGRTRG 411 Query: 435 LQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELVV 469 + + N G ++KV+IT+V+ +L GE + Sbjct: 412 NRLTFFSGDINQLKGQLVKVKITEVRAFSLTGEALT 447 >gi|331697733|ref|YP_004333972.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pseudonocardia dioxanivorans CB1190] gi|326952422|gb|AEA26119.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pseudonocardia dioxanivorans CB1190] Length = 490 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 176/447 (39%), Positives = 265/447 (59%), Gaps = 40/447 (8%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + +++YGCQMNV+DS RM + S GY R + DDAD++VLNTC +RE A K+Y LG Sbjct: 5 YTIRTYGCQMNVHDSERMAGLLESAGYVRAEATDDADVVVLNTCAVRENADNKLYGNLGH 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + K +R + + V GC+AQ + + I+ ++P V+VV G LP LLERAR Sbjct: 65 LAPRKAARPG----MQIAVGGCLAQKDRDTIVAKAPWVDVVFGTHNVGALPTLLERARHN 120 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +R V+ S+E L R+ +++I GC+ CTFC+VP RG E R Sbjct: 121 ERAEVEIRESLEVFPSTLPA-----RRESAYAGWVSISVGCNNTCTFCIVPSLRGKERDR 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 V+ E L +GV E+TLLGQNVNA+ G++ G++ FS LL + +++GL R+R Sbjct: 176 RPGDVLAEVSALAADGVLEVTLLGQNVNAY---GVEFGDREAFSKLLRACGDVEGLERVR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HPR+ S +I A + + P LH+P+QSGSDR+L+ M R + + + I+D +R Sbjct: 233 FTSPHPREFSSDVIAAMAETPNVCPQLHMPLQSGSDRVLREMRRSYRSSRFLAILDEVRG 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD AIS+D IVGFPGET++DFRAT+D+V++ +AQAF+F+YSPR GTP + + +Q+ + Sbjct: 293 SIPDAAISTDIIVGFPGETEEDFRATLDVVERARFAQAFTFQYSPRPGTPAATLPDQLPK 352 Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-------------GKL 428 V + ERL+ LQ+++ +Q N A G+++EVL+ K G+L Sbjct: 353 AVVQERYERLVELQERISWEQ---NRALEGRVVEVLVSTGEGRKDSATRRLSGRARDGRL 409 Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRI 455 V +P V GD++ VR+ Sbjct: 410 VHFAPGAAPV-------RPGDVVTVRV 429 >gi|15895113|ref|NP_348462.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824] gi|81530267|sp|Q97I18|MIAB_CLOAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|15024813|gb|AAK79802.1|AE007692_10 Predicted Fe-S oxidoreductase, YMCB B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325509252|gb|ADZ20888.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018] Length = 441 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 178/446 (39%), Positives = 268/446 (60%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF++++GCQMN DS ++ M YE ++ +DADLI+ NTC +RE A KVY LG Sbjct: 7 FFIETWGCQMNAEDSEKLAGMLKEMKYEATDNREDADLIIFNTCCVRENAELKVYGNLGT 66 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ LK+ + +L++ V GC+ Q E I +R P V++V+G P+ L++ Sbjct: 67 LKKLKDKK----PNLIITVCGCMMQQRDMAEHIKKRFPFVDIVMGTHNTQMFPQYLKKVE 122 Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + V + DK E IV+G R + AF+TI GC+ FCT+C+VPY RG E Sbjct: 123 NERTSV---VEIWDKEE--GIVEGMPIYRSYDMKAFVTIMYGCNNFCTYCIVPYVRGRER 177 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +E ++L+ G EITLLGQNVN++ GK LD E+ F+ LL L+ I+GL+R+ Sbjct: 178 SRKPEDIENEIKELVKKGYKEITLLGQNVNSY-GKSLD-EEMNFALLLRRLNNIEGLLRI 235 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D++D +I A D D + ++HLPVQSGS IL MNR +T +Y ++++I+ Sbjct: 236 RFMTSHPKDLTDDVIAAIADCDKVCEHIHLPVQSGSTTILNKMNRNYTREDYINLVNKIK 295 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S ++AI++D IVGFPGET++DF T+ LV ++ Y AF+F YS R GTP + Q+ Sbjct: 296 SGIKNVAITTDIIVGFPGETEEDFEDTLSLVKEVEYDSAFTFLYSIREGTPAAKYENQIP 355 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLNS 442 + VK +R L + + N G+I+E+L+E K G KL+GR+ + V Sbjct: 356 DEVKHKRFNKLLEAVNLISEKKNKEYEGKIVEILVEGKSKNDGSKLMGRTRTGKLVNFEG 415 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 +IG +I V+IT + +L GE V Sbjct: 416 LESSIGKLINVKITKAQAFSLVGEEV 441 >gi|298493062|ref|YP_003723239.1| MiaB family RNA modification protein ['Nostoc azollae' 0708] gi|298234980|gb|ADI66116.1| RNA modification enzyme, MiaB family ['Nostoc azollae' 0708] Length = 453 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 184/454 (40%), Positives = 273/454 (60%), Gaps = 23/454 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R+ + ++GCQMN DS RM + G+E +DA++I+ NTC IRE A +KVYS+L Sbjct: 5 RRYHITTFGCQMNKADSERMAGILEKMGFEWSEDPNDANVILYNTCTIRENAEQKVYSYL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + R E DL +VVAGCVAQ EGE +LRR P +++V+GPQ RL +LLE Sbjct: 65 GR----QAKRKHERPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLEDLLESVF 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +VV T E + I++ +R VTA++ + GC++ CT+CVVP RG+E Sbjct: 121 DGNQVVAT--------EEVHILEDITQPRRDSQVTAWVNVIYGCNERCTYCVVPNVRGVE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256 SR+ + + E +L G E+TLLGQN++A+ G+ L G T +DLLY + + Sbjct: 173 QSRTPTAIRAEMEELGRKGYKEVTLLGQNIDAY-GRDLPGTTPEGRHLHTLTDLLYYVHD 231 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + G+ RLR+ TSHPR ++ LIKA +L + + H+P QSG ++ILK M+R +T +YR Sbjct: 232 VPGIERLRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNQILKGMSRGYTHEKYR 291 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +IID IR PD +IS D IVGFPGE ++ F T+ LVD IG+ + YSPR GTP + Sbjct: 292 RIIDTIRRYMPDASISGDAIVGFPGEREEQFENTLKLVDDIGFDLLNTAAYSPRPGTPAA 351 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWL 435 Q+ E VK+ERL L + + + G++ EVL+E ++ K+ +++GR+ Sbjct: 352 LWDNQLSEEVKSERLQRLNHLVNVKAAERSQRYFGRVEEVLVEDQNTKDNTQVMGRTGGN 411 Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + N G I+KV+IT+V+ +L GE + Sbjct: 412 RLTFFTGDINELKGQIVKVKITEVRPFSLTGEPI 445 >gi|219854806|ref|YP_002471928.1| hypothetical protein CKR_1463 [Clostridium kluyveri NBRC 12016] gi|219568530|dbj|BAH06514.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 454 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 170/445 (38%), Positives = 266/445 (59%), Gaps = 15/445 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + FF+ +YGCQMN DS ++ + GY+R + ADLI+ NTC +RE A KVY L Sbjct: 18 KSFFISTYGCQMNEEDSEKLSGILKKMGYKRAENKLSADLIIFNTCCVRENAELKVYGNL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK R +L++ + GC+ Q +G E+++++ P V+++ G Y+ PE L R Sbjct: 78 GALKKLKKQR----PELIIALCGCMMQQKGMAEKVIKKFPFVDIIFGTHNAYKFPEYLNR 133 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 V ++DK + IV+G +R+ V AF+TI GC+ FC +C+VPY RG Sbjct: 134 VNHQNVSV---IEIQDKED--GIVEGVPIDRESSVKAFVTIMYGCNNFCAYCIVPYVRGR 188 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR + +E ++L+ G E+TLLGQNVN++ GK L+ + FS+LL ++ + G+ Sbjct: 189 ERSRKPEDIENEIKELVSKGYKEVTLLGQNVNSY-GKNLN-PRVNFSELLRRINNVDGIE 246 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D++D +I + D + ++HLPVQSGS RILK MNR ++ +Y ++ Sbjct: 247 RIRFMTSHPKDLTDDVIDVISECDKICEHIHLPVQSGSTRILKKMNRNYSKEQYLALVSE 306 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ PD +I++D IVGFPGET++DF T++L + + + AF+F YS R GTP + EQ Sbjct: 307 IKHKIPDASITTDIIVGFPGETEEDFEETLNLAEGVEFDSAFTFIYSKREGTPAYKIEEQ 366 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 + ++VK ER L + + + N G+I EVL+E K + KL+GR+ + V Sbjct: 367 ISDDVKHERFNRLVEVINKSAAKKNKVYEGRIEEVLVEGPSKNDSTKLMGRTRTGKLVNF 426 Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465 IG+++KV IT +L G Sbjct: 427 QGDKAFIGELVKVEITKATSFSLLG 451 >gi|282862292|ref|ZP_06271354.1| RNA modification enzyme, MiaB family [Streptomyces sp. ACTE] gi|282562631|gb|EFB68171.1| RNA modification enzyme, MiaB family [Streptomyces sp. ACTE] Length = 497 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 182/454 (40%), Positives = 263/454 (57%), Gaps = 22/454 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKV 80 V + + V++YGCQMNV+DS R+ + GY R S DAD++V NTC +RE A K+ Sbjct: 3 VQKSYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNKL 62 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 Y LGR+ +K R + + V GC+AQ + + I+RR+P V+VV G +LP LL Sbjct: 63 YGNLGRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVRRAPWVDVVFGTHNIGKLPVLL 118 Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 ERAR + V+ S+E L R+ A+++I GC+ CTFC+VP R Sbjct: 119 ERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 173 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258 G E R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + I+ Sbjct: 174 GKEKDRRTGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGTIE 230 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R+T+ HPRD +D +I A + +MP LH+P+QSGSDRILK+M R + + I Sbjct: 231 GLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDRILKAMRRSYRQERFLGI 290 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I+++R+ PD AIS+D IVGFPGET++DF TM V + +A AF+F+YS R GTP ++M Sbjct: 291 IEKVRAAMPDAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADM 350 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434 Q+ + V ER + L E N VG+ ++V++ E G++ G +L GR+P Sbjct: 351 EGQIPKEVVQERYMRLSALQEEISWEENKKQVGRTLDVMVAEGEGRKDGATHRLSGRAPD 410 Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 + V ++ GD++ V IT L E Sbjct: 411 NRLVHFTKPAQDVRPGDVVTVDITYAAPHHLLAE 444 >gi|218437115|ref|YP_002375444.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp. PCC 7424] gi|229890508|sp|B7K993|MIAB_CYAP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|218169843|gb|ACK68576.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7424] Length = 454 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 182/454 (40%), Positives = 277/454 (61%), Gaps = 23/454 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R+ + ++GCQMN DS RM + GY+ + ++ADL++ NTC IR+ A +KVYS+L Sbjct: 6 RRYHITTFGCQMNKADSERMAGILEDIGYQWSDDPNEADLVLYNTCTIRDNAEQKVYSYL 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + R E DL ++VAGCVAQ EGE++LRR P +++V+GPQ RL +LL+ Sbjct: 66 GR----QAKRKHEKPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLQDLLQEVL 121 Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +VV T+ + VED + R+ VTA++ + GC++ CT+CVVP RG+E Sbjct: 122 AGNQVVATEPIHIVEDITKP--------RRESTVTAWVNVIYGCNERCTYCVVPNVRGVE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256 SR+ + E +L G EITLLGQN++A+ G+ L G + T +DLLY +++ Sbjct: 174 QSRTPQAIRAEMVELGQQGYKEITLLGQNIDAY-GRDLPGVTESGRHQHTLTDLLYYVND 232 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + G+ R+R+ TSHPR ++ LI A +L + + H+P QSG + +LK+M R +T YR Sbjct: 233 VPGIERIRFATSHPRYFTERLIVACKELPKVCEHFHIPFQSGDNDLLKAMKRGYTHERYR 292 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 QIID+IR PD +IS+D IVGFPGET+ F T+ LV+ IG+ Q + YSPR GTP + Sbjct: 293 QIIDKIREYMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAA 352 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWL 435 Q+ E VK++RL L + + + +G+I EVL+E + K+ +++GR+ Sbjct: 353 LWDNQLSEEVKSDRLQRLNHLVAIKAAERSQRYLGRIEEVLVEDVNPKDLTQVMGRTRGN 412 Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + N G +++V+ITDV+ +L GE V Sbjct: 413 RLTFFTGDINQLKGQLVEVKITDVRAFSLTGEPV 446 >gi|153954198|ref|YP_001394963.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium kluyveri DSM 555] gi|146347079|gb|EDK33615.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] Length = 444 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 170/445 (38%), Positives = 266/445 (59%), Gaps = 15/445 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + FF+ +YGCQMN DS ++ + GY+R + ADLI+ NTC +RE A KVY L Sbjct: 8 KSFFISTYGCQMNEEDSEKLSGILKKMGYKRAENKLSADLIIFNTCCVRENAELKVYGNL 67 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK R +L++ + GC+ Q +G E+++++ P V+++ G Y+ PE L R Sbjct: 68 GALKKLKKQR----PELIIALCGCMMQQKGMAEKVIKKFPFVDIIFGTHNAYKFPEYLNR 123 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 V ++DK + IV+G +R+ V AF+TI GC+ FC +C+VPY RG Sbjct: 124 VNHQNVSV---IEIQDKED--GIVEGVPIDRESSVKAFVTIMYGCNNFCAYCIVPYVRGR 178 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR + +E ++L+ G E+TLLGQNVN++ GK L+ + FS+LL ++ + G+ Sbjct: 179 ERSRKPEDIENEIKELVSKGYKEVTLLGQNVNSY-GKNLN-PRVNFSELLRRINNVDGIE 236 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D++D +I + D + ++HLPVQSGS RILK MNR ++ +Y ++ Sbjct: 237 RIRFMTSHPKDLTDDVIDVISECDKICEHIHLPVQSGSTRILKKMNRNYSKEQYLALVSE 296 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ PD +I++D IVGFPGET++DF T++L + + + AF+F YS R GTP + EQ Sbjct: 297 IKHKIPDASITTDIIVGFPGETEEDFEETLNLAEGVEFDSAFTFIYSKREGTPAYKIEEQ 356 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 + ++VK ER L + + + N G+I EVL+E K + KL+GR+ + V Sbjct: 357 ISDDVKHERFNRLVEVINKSAAKKNKVYEGRIEEVLVEGPSKNDSTKLMGRTRTGKLVNF 416 Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465 IG+++KV IT +L G Sbjct: 417 QGDKAFIGELVKVEITKATSFSLLG 441 >gi|257126661|ref|YP_003164775.1| RNA modification enzyme, MiaB family [Leptotrichia buccalis C-1013-b] gi|257050600|gb|ACV39784.1| RNA modification enzyme, MiaB family [Leptotrichia buccalis C-1013-b] Length = 441 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 169/447 (37%), Positives = 269/447 (60%), Gaps = 12/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + +YGCQMNV +S +M+ M + GY +++ DL+ LNTC +RE AA KVY L Sbjct: 3 KRATIITYGCQMNVNESAKMKQMLQTMGYNMTEDIENTDLVFLNTCTVREGAAVKVYGKL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++ +K + G +++ V GC+AQ +E ++++P V++V+G Q R+P++LER Sbjct: 63 GDLKRIKEEK---DGKMIIGVTGCLAQEVRDEFIKKTPYVDLVLGNQNIGRIPDILERIE 119 Query: 145 FGKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+ DT V+D+ E + VD + + A ++I GC+ +CTFC+VPY RG+E Sbjct: 120 SGE---DTHIVMVDDEDELPTRVDADFGDD--IVASISITYGCNNYCTFCIVPYVRGMER 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S L++++ + + G EI LGQNVN++ +G+ F++LL + ++G + Sbjct: 175 SVPLNEIIRDVEQYTKKGYKEILFLGQNVNSYGSDFANGQD-NFAELLEQSANVEGDFWI 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 +Y + HP+D SD +I + LHLP+QSGS +IL SMNR +T E+ + +I+ Sbjct: 234 KYVSPHPKDFSDEVIDVIARNPKIARMLHLPLQSGSTKILDSMNRGYTKEEFIALAKKIK 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PDI +++D IVGFPGETD+DF+ TMD+V+++G+ AF F YS R GTP + M EQVD Sbjct: 294 EKIPDIGLTTDIIVGFPGETDEDFQDTMDVVNEVGFENAFMFMYSKRTGTPAATMEEQVD 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 E K ERL L + + + +GQ ++VL+E ++ + L GRS + ++ S Sbjct: 354 EQTKNERLQQLMRLQNMKAKEESQKYLGQTVKVLVEGPSRKNPEMLTGRSSTHKIILFKS 413 Query: 443 KNHNI-GDIIKVRITDVKISTLYGELV 468 ++ G + V+I D K TLYGE+V Sbjct: 414 DRKDLKGQFVNVKIYDAKTWTLYGEMV 440 >gi|188996756|ref|YP_001931007.1| RNA modification enzyme, MiaB family [Sulfurihydrogenibium sp. YO3AOP1] gi|229891027|sp|B2V930|MIAB_SULSY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|188931823|gb|ACD66453.1| RNA modification enzyme, MiaB family [Sulfurihydrogenibium sp. YO3AOP1] Length = 437 Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 171/453 (37%), Positives = 279/453 (61%), Gaps = 30/453 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F++K++GCQMNV DS +M + + GY + ++AD+I++NTC +REK +KV S LG Sbjct: 2 KFYIKTFGCQMNVNDSEKMAGILQTLGYTPTENWEEADVILVNTCSVREKPDQKVLSALG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K + ++ V GC+AQ G EI +++P +++V G + LP LLE A+ Sbjct: 62 EFKKVK----KHNPNAVIGVCGCLAQRAGYEIYQKAPFIDIVFGTTNIHHLPNLLEEAKS 117 Query: 146 GKRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G + + D + ++ D+F + R+ TAF+T+ GCDK CT+C+VP TR Sbjct: 118 GNKAIEILEEIDENENLLDQFPTV--------RENKYTAFVTVIRGCDKKCTYCIVPTTR 169 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR + ++ E + L+++GV EI L+GQNV A+ G D F +LL +++E+ G Sbjct: 170 GRERSRRIGDILREVQYLVEDGVKEIHLIGQNVTAY---GKDFGDVKFWELLKAVAEVDG 226 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+TT HPRD+ + IK DL + LHLP+Q+GSDRIL++M+R +T EY Q I Sbjct: 227 VERIRFTTGHPRDLDEDTIKVMADLPQICEALHLPIQAGSDRILQAMDRGYTQKEYLQKI 286 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-- 377 + ++ P+IA+S+D IVGFPGET +D+ T+ ++ ++ Y Q F+FKYSPR GTP ++ Sbjct: 287 ELLKKYIPNIALSTDIIVGFPGETYEDYLETVKVIKEVEYDQVFAFKYSPRPGTPAADLP 346 Query: 378 MLEQVDE-NVKAERLLCLQKKLR-EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 M E +E + + L+ LQK + ++ + + D +I+E+L+E+ +E KLVGR+ Sbjct: 347 MTESPEELSKRLNDLINLQKDITFKKNLEYQD----KIVEILVEEINQE-NKLVGRTRTN 401 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V +G ++ V+I V +L G ++ Sbjct: 402 KLVYAEGSPEYLGKLVNVKIEKVNRFSLEGSII 434 >gi|226312967|ref|YP_002772861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brevibacillus brevis NBRC 100599] gi|226095915|dbj|BAH44357.1| probable tRNA methylthiotransferase [Brevibacillus brevis NBRC 100599] Length = 503 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 179/448 (39%), Positives = 266/448 (59%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R+ V++YGCQMN +DS + + + GY +S++DAD+I+ NTC IRE A +KV+ L Sbjct: 62 KRYHVRTYGCQMNEHDSETISGILQAMGYTSSDSVEDADVILFNTCAIRENAEDKVFGEL 121 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LKN+ +L++ V GC++Q E ++IL+ V+++ G +RLPELL Sbjct: 122 GHMKRLKNN----NPNLILGVCGCMSQEEKVVKKILKSYQQVDLIFGTHNIHRLPELLRD 177 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGI 201 A F K +V +S E IV+ + G T ++ I GCDKFCT+C+VPYTRG Sbjct: 178 AMFSKEMVIEVWSKEG-----DIVENMPKLREGNTKGWVNIMYGCDKFCTYCIVPYTRGK 232 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR V+ E R L G EI LLGQNVNA+ GK + K F DL+ + +I + Sbjct: 233 ERSRRPEDVIAEVRDLARQGFKEIMLLGQNVNAY-GKDFEDIKYGFGDLMDEIRKID-IP 290 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ +HLPVQSGS +LK M R+++ Y +++ + Sbjct: 291 RVRFTTSHPRDFDDHLIEVLAKGGNLVEQIHLPVQSGSTEVLKRMARKYSREHYLELVRK 350 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P++++S+D IVGFPGETD+ F T+ +V+++ Y A++F YSPR GTP + M + Sbjct: 351 IKDAIPNVSLSTDIIVGFPGETDEQFEDTISMVEEVKYDFAYTFIYSPREGTPAAVMEDN 410 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK RL L + L + N Q++EVL+E + + L GR+ + V Sbjct: 411 VPMEVKKARLYRLNEVLAGIALEQNKKLQDQVVEVLVEGESRTNAEVLAGRTRTNKLVHF 470 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + ++ITD K TL+GELV Sbjct: 471 TGDKSLIGQYVHIKITDAKTWTLHGELV 498 >gi|225849364|ref|YP_002729528.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Sulfurihydrogenibium azorense Az-Fu1] gi|225643388|gb|ACN98438.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sulfurihydrogenibium azorense Az-Fu1] Length = 437 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 173/451 (38%), Positives = 281/451 (62%), Gaps = 28/451 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +++++++GCQMNV DS +M + + GYE +AD+I++NTC +REK +KV S LG Sbjct: 2 KYYIRTFGCQMNVNDSEKMAGILKTLGYEPAQDWKEADVILVNTCSVREKPDQKVLSALG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K+ + ++ V GC+AQ G EIL+++P +++V G + LP+LLE A+ Sbjct: 62 EFKKIK----KDKPNAIIGVCGCLAQRAGYEILQKAPFIDMVFGTTNIHHLPQLLEEAKS 117 Query: 146 GKRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G + V D + ++ D+F + R+ TAF+T+ GCDK CT+C+VP TR Sbjct: 118 GNKAVEILEEIDENENLLDQFPTV--------RENKYTAFVTVIRGCDKKCTYCIVPTTR 169 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR + ++ E + L+++GV EI L+GQNV A+ GK L K F +LL +++ + G Sbjct: 170 GKERSRRIGDILREVQFLVEDGVKEIHLIGQNVTAY-GKDLGDVK--FWELLQAVASVPG 226 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+TT HPRD+ + IK DL + LHLP+Q+GSD++L++M+R +T EY Q I Sbjct: 227 VERIRFTTGHPRDLDEDTIKVMADLPQVCEALHLPIQAGSDKVLQAMDRGYTQKEYLQKI 286 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM- 378 D ++ PDIA+S+D IVGFPGET +D+ T+ ++ ++ Y Q F+FKYSPR GTP +++ Sbjct: 287 DLLKKYIPDIALSTDIIVGFPGETYEDYLETVKVIKEVEYDQVFAFKYSPRPGTPAADIP 346 Query: 379 LEQVDENVKA--ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 + + E + L+ +QK + ++ N + G+ +EVLIE+ E+GKL GR+ + Sbjct: 347 MTESPETISKWLNDLINIQKDITFKK---NLSYEGKTVEVLIEEVN-EEGKLTGRTRTNK 402 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 V ++ +G I+ V+I V +L G + Sbjct: 403 LVHVDGPQEYVGYIVNVKIEKVNRFSLEGRI 433 >gi|255066997|ref|ZP_05318852.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria sicca ATCC 29256] gi|255048822|gb|EET44286.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Neisseria sicca ATCC 29256] Length = 496 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 162/375 (43%), Positives = 233/375 (62%), Gaps = 7/375 (1%) Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTDY 154 ++ DL++ VAGCVA EGE I++R+P V+VV GPQT +RLP+++ ++ G VD + Sbjct: 125 RKNPDLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVDKETSGLSQVDISF 184 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 +KF+ L R G AF++I EGC K+C+FCVVPYTRG E SR L+ V+ E Sbjct: 185 PEIEKFDHLPPA-----RVEGGAAFVSIMEGCSKYCSFCVVPYTRGEEFSRPLNDVLTEI 239 Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274 L GV EI LLGQNVNA+RG+ DGE C F+ LL + EI G+ R+R+TTSHPR+ + Sbjct: 240 ANLAQQGVKEINLLGQNVNAYRGEMEDGEICDFATLLRIVHEIPGIERMRFTTSHPREFT 299 Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334 D +I+ + DL L+ +LHLP+QSGSDR+L +M R +TA EY+ II ++R++RPD+ +SSD Sbjct: 300 DSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRKLRAIRPDLCLSSD 359 Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394 FIVGFPGET+ +F T+ LV I + +F F YSPR GTP +N+ + K RL L Sbjct: 360 FIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDDTPHAEKVRRLEAL 419 Query: 395 QKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453 + + + N +G + L+E K+ +L R+ + V I +I + Sbjct: 420 NEVIEAETARINQTMIGTVQRCLVEGISKKDPDQLQARTANNRVVNFTGTPDMINQMIDL 479 Query: 454 RITDVKISTLYGELV 468 IT+ +L G+ V Sbjct: 480 EITEAYTFSLRGKPV 494 >gi|294500858|ref|YP_003564558.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium QM B1551] gi|294350795|gb|ADE71124.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium QM B1551] Length = 520 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 177/448 (39%), Positives = 260/448 (58%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F GYE +S++DA +I+LNTC IRE A KV+ L Sbjct: 77 RKFYIRTYGCQMNEHDTEVMAGIFLGLGYEPTDSVEDAHVILLNTCAIRENAENKVFGEL 136 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK R +LL+ V GC++Q E +IL++ V+++ G +RLP +L Sbjct: 137 GHLKALKRER----PELLIGVCGCMSQEESVVNKILQKHQHVDMIFGTHNIHRLPHILNE 192 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L RK V A++ I GCDKFCT+C+VPYTRG Sbjct: 193 AYLAKEMVIEVWSKEGDVIENLPRA-----RKGSVKAWVNIMYGCDKFCTYCIVPYTRGK 247 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L G EITLLGQNVNA+ GK + DL+ + +I + Sbjct: 248 ERSRRPEDIIQEVRHLAAQGYKEITLLGQNVNAY-GKDFEDMTYGLGDLMDEIRKI-DVA 305 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS ILK M R+++ Y +++ + Sbjct: 306 RIRFTTSHPRDFDDRLIEVLAKGGNLVDHIHLPVQSGSSDILKIMARKYSREHYLELVRK 365 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P ++++D IVGFP ETD+ F TM L ++ + A++F YSPR GTP + M + Sbjct: 366 IKEAIPTASLTTDIIVGFPNETDEQFEETMSLYREVEFDSAYTFIYSPREGTPAAKMQDN 425 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + E G+++EVL+E K + L G + + V Sbjct: 426 VPMEVKKERLQRLNALVNEISAKKLKEYEGKVVEVLVEGESKNNPEVLAGYTEKSKLVNF 485 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV++T K TL GE+V Sbjct: 486 KAPKSVIGQLVKVKVTKAKTWTLNGEMV 513 >gi|164688057|ref|ZP_02212085.1| hypothetical protein CLOBAR_01702 [Clostridium bartlettii DSM 16795] gi|164602470|gb|EDQ95935.1| hypothetical protein CLOBAR_01702 [Clostridium bartlettii DSM 16795] Length = 482 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 172/453 (37%), Positives = 282/453 (62%), Gaps = 19/453 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +F++++GCQMN +DS ++ M + GYE D+ADLI+ NTC +RE A KVY L Sbjct: 39 KSYFIQTFGCQMNEHDSEKLGAMLNAMGYEPSLMADNADLIIYNTCAVRENAELKVYGNL 98 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ +K + +L + V GC+ Q +EI + V++V G Y+ PELL Sbjct: 99 GHLKLIK----RRNPNLKIAVCGCMMQQPAIVKEIKAKYKHVDLVFGTHNLYKFPELLSE 154 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + ++ + V+ + +V+G +RK + AF+ I GC+ FCT+C+VPYTRG Sbjct: 155 SMSSDSILIDVWDVDGE-----VVEGLRSDRKFELKAFVNIMYGCNNFCTYCIVPYTRGR 209 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGL 260 E SR +++E ++L+ NG E+TLLGQNV+++ GK L+ E + TF++LL +++EI GL Sbjct: 210 ERSRRPEDIMNEIKELVANGTKEVTLLGQNVDSY-GKTLEEEDRMTFAELLRAVNEIDGL 268 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHP+D+SD +I A D D + +LHLPVQ GS ++LK MNR ++ +Y +I++ Sbjct: 269 ERIRFMTSHPKDISDEVIYAMRDCDKVCEFLHLPVQCGSTKLLKKMNRHYSKEDYLRIVE 328 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + ++ P+IA S+D +VGFPGET++D T+D++ ++ Y AF+F YS R GTP + M + Sbjct: 329 KAKAEVPNIAFSTDIMVGFPGETEEDVEDTLDVIRQVRYDNAFTFIYSKRTGTPAAKMED 388 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 Q+ E+VK +R + + + E N +++E+L+E K + K GR+ + V Sbjct: 389 QIPEDVKHKRFNRVLELVNEISKENNTTHQDEVVEILVEGKSKTDDTKFTGRTRQNKLVN 448 Query: 440 LNSKNHN---IGDIIKVRITDVKIS-TLYGELV 468 + KN + IG ++ V+IT+ +S +L GE+V Sbjct: 449 FSVKNPDADLIGKLVNVKITEAALSFSLNGEMV 481 >gi|326776162|ref|ZP_08235427.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Streptomyces cf. griseus XylebKG-1] gi|326656495|gb|EGE41341.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Streptomyces cf. griseus XylebKG-1] Length = 506 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 183/464 (39%), Positives = 272/464 (58%), Gaps = 29/464 (6%) Query: 15 SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHI 72 S+ VD V + + V++YGCQMNV+DS R+ + GY R S DAD++V NTC + Sbjct: 7 SEAVD---VQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAV 63 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 RE A K+Y LGR+ +K R + + V GC+AQ + + I++R+P V+VV G Sbjct: 64 RENADNKLYGNLGRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHN 119 Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 +LP LLERAR + ++ S+E L R+ A+++I GC+ CT Sbjct: 120 IGKLPVLLERARVQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCT 174 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDL 250 FC+VP RG E R ++ E L+ GVCEITLLGQNVNA+ G D G++ FS L Sbjct: 175 FCIVPALRGKEKDRRTGDILAEIEALVAEGVCEITLLGQNVNAY---GSDIGDREAFSKL 231 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L + +I+GL R+R+T+ HPRD +D +I A + +MP LH+P+QSGSD ILK+M R + Sbjct: 232 LRACGKIEGLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDTILKAMRRSY 291 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + II+++R+ P+ AIS+D IVGFPGET++DF TM V + +A AF+F+YS R Sbjct: 292 RQERFLGIIEKVRAAMPEAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKR 351 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLI-EKHGKEKG- 426 GTP ++M Q+ + V ER + L ++Q+S+ N VG+ ++V++ E G++ G Sbjct: 352 PGTPAADMDGQIPKEVVQERYMRLSA--LQEQISWDENKKQVGRTLDVMVAEGEGRKDGA 409 Query: 427 --KLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 +L GR+P + V + GD++ V IT L E Sbjct: 410 TQRLSGRAPDNRLVHFTQPEKAVRPGDVVTVEITYAAPHHLLAE 453 >gi|332982488|ref|YP_004463929.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mahella australiensis 50-1 BON] gi|332700166|gb|AEE97107.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mahella australiensis 50-1 BON] Length = 443 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 176/451 (39%), Positives = 272/451 (60%), Gaps = 21/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F + +YGCQMN +DS +M + GYE AD+I+ NTC +RE A ++VY + Sbjct: 4 KKFTIVTYGCQMNEHDSEKMAGILSDMGYEWTEDKAGADIILFNTCCVREHAEQRVYGNI 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DL++ V GC+ Q EG +++ + P V+++ G LP+L++ Sbjct: 64 GMLKPLK----QVNPDLIIGVCGCMMQQEGMAQKLAQTFPFVDIIFGTHNLNELPKLIDE 119 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A+ + V + + +F+ + R V+A++T+ GC+ FCT+C+VPY RG E Sbjct: 120 AKASRFTVVDIHEQDHEFDESMPI----RRASKVSAWVTVMYGCNNFCTYCIVPYVRGRE 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR +V+E ++L D G EITLLGQNVN++ GK D EK F+DLL L +I+G+ R Sbjct: 176 HSRRPDDIVNEVKELADQGYKEITLLGQNVNSY-GKDSD-EKVEFADLLRMLDDIEGVER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+D+SD LI A D + LHLPVQSGS RIL+ MNR +T Y +++++I Sbjct: 234 IRFTTSHPKDLSDNLIYAMRDCKKVCHQLHLPVQSGSTRILRRMNRHYTKEGYLELVEKI 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++ PDIA+S+D IVGFPGETD+DF T+D+V + Y A++F YS R GTP + + + Sbjct: 294 KANIPDIALSTDIIVGFPGETDEDFEDTLDVVRRAQYDLAYTFIYSKRSGTPAAKLEDPT 353 Query: 383 DENVKA---ERLLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQS 437 +K +RL+ LQ + RE+ N G ++EVL+E + KG+++GR+ + Sbjct: 354 PREIKQQRLQRLIDLQTAITREKNQRLN----GAVVEVLVEGPSRNGKGQMMGRTTGNKV 409 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V IG ++ V IT+ L G L+ Sbjct: 410 VNFEGNASLIGKLVDVLITEPSTWFLNGRLM 440 >gi|304404333|ref|ZP_07385995.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus curdlanolyticus YK9] gi|304347311|gb|EFM13143.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus curdlanolyticus YK9] Length = 530 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 171/447 (38%), Positives = 265/447 (59%), Gaps = 14/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + V ++GCQMN +DS M+ + GY AD+I+LNTC IRE A +KV+ L Sbjct: 87 KHYMVYTFGCQMNEHDSEVMKGLLEQMGYTPTEDRKLADVILLNTCAIRENAEDKVFGEL 146 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK R +LL+ V GC++Q E IL P V++V G +RLP LL+ Sbjct: 147 GHLKGLKRER----PNLLLGVCGCMSQEESVVGRILATHPFVDLVFGTHNIHRLPYLLQS 202 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A F + +V +S E I++ ++ G+ A++ I GCDKFCT+C+VPYTRG E Sbjct: 203 AYFNQEMVVEVWSKEG-----DIIENLPKKREGMRAWVNIMYGCDKFCTYCIVPYTRGKE 257 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + ++ E R+L G E+TLLGQNVNA+ GK + F+DL+ +S+I + R Sbjct: 258 RSRLPADIIAEVRELARQGYKEVTLLGQNVNAY-GKDFTDDNYRFADLMADISQI-AIPR 315 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHPRD D LI+ L+ ++HLPVQSGS ILK M+R+++ ++ + +RI Sbjct: 316 IRFMTSHPRDFDDHLIEVLAQGGNLVEHIHLPVQSGSSAILKRMSRKYSREQFLSLANRI 375 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + P++ +++D IVGFPGE+++ F T+ LV ++G+ A++F YSPR GTP ++M + V Sbjct: 376 KQAIPNVVLTTDIIVGFPGESEEQFEETLTLVREVGFDLAYTFIYSPREGTPAADMEDDV 435 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441 K +RL L + + EQ ++ VGQ++EVL+E K L GR+ + V Sbjct: 436 PMETKKKRLSRLNELMAEQGRIGHEKLVGQVVEVLVEGESKNNANVLAGRTRTNKLVHFE 495 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG +I+VR+T+ + + E + Sbjct: 496 GPKEWIGQLIQVRVTEAQTWYIKAEAI 522 >gi|309389296|gb|ADO77176.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halanaerobium praevalens DSM 2228] Length = 443 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 174/446 (39%), Positives = 271/446 (60%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + + +YGCQMN +DS R+ M GY+ + ++AD+I+LNTC IRE A KV+ LG Sbjct: 7 YNIITYGCQMNKHDSERLAGMLEEMGYQPTDKYENADIILLNTCIIRENAELKVFGKLGE 66 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER-A 143 ++ K +E DL++ + GC+ Q + +E+ ++ V+++ G + LP+L+ + Sbjct: 67 LKRYK----RENPDLIIGIGGCMMQQDEPVDEVYKKYRHVDLIFGTHNIHHLPDLINKIE 122 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + RVV+ V D+ E L I D RK +A+++I +GCD FCT+C+VPY RG E Sbjct: 123 KTRDRVVE----VWDEEEGL-IPDLPSQRKSEHSAWISIIQGCDNFCTYCIVPYVRGRER 177 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR L+ +V EA KL +GV EITLLGQNVN++ G L+ E TF LL L++++ L R+ Sbjct: 178 SRPLTSIVKEAEKLAADGVKEITLLGQNVNSY-GNDLEKE-TTFPKLLAELNKVQKLKRI 235 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHPRD SD L++ +LD + ++HLP+QSGS+++LK MNR +T Y + +++IR Sbjct: 236 RFMTSHPRDFSDELLEKIAELDKVANHIHLPIQSGSNKVLKQMNRGYTREYYIERVEKIR 295 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P ++S+DFIVGFPGET+ DF T++LV ++ + A++F YSPR GTP ++ +Q+D Sbjct: 296 KEMPHASVSTDFIVGFPGETEADFEQTINLVKELNFDMAYTFIYSPRSGTPAASRKDQID 355 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442 E VK +RL L + N +G EVL+ K+ GR+ + Sbjct: 356 EEVKKKRLKTLMDLQNKISYDKNQKLIGSTQEVLVTGASDSNPKVYEGRTSTNKICFFEK 415 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 + IG+++ V+I K TL G ++ Sbjct: 416 REELIGELVNVKIEAAKSWTLDGTII 441 >gi|295706204|ref|YP_003599279.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium DSM 319] gi|294803863|gb|ADF40929.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium DSM 319] Length = 509 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 179/450 (39%), Positives = 262/450 (58%), Gaps = 19/450 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F GYE +S++DA +I+LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFLGLGYEPTDSVEDAHVILLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK R +LL+ V GC++Q E +IL++ V+++ G +RLP +L Sbjct: 126 GHLKALKRER----PELLIGVCGCMSQEESVVNKILQKHQHVDMIFGTHNIHRLPHILNE 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L RK V A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AYLAKEMVIEVWSKEGDVIENLPRA-----RKGSVKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS--DLLYSLSEIKG 259 E SR ++ E R L G EITLLGQNVNA+ G D E T+ DL+ + +I Sbjct: 237 ERSRRPEDIIQEVRHLAAQGYKEITLLGQNVNAY---GKDFEDITYGLGDLMDEIRKI-D 292 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+TTSHPRD D LI+ L+ ++HLPVQSGS ILK M R+++ Y +++ Sbjct: 293 VARIRFTTSHPRDFDDRLIEVLAKGGNLVDHIHLPVQSGSSDILKIMARKYSREHYLELV 352 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +I+ P ++++D IVGFP ETD+ F TM L ++ + A++F YSPR GTP + M Sbjct: 353 RKIKEAIPTASLTTDIIVGFPNETDEQFEETMSLYREVEFDSAYTFIYSPREGTPAAKMQ 412 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438 + V VK ERL L + E G+++EVL+E K + L G + + V Sbjct: 413 DNVPMEVKKERLQRLNALVNEISAKKLKEYEGKVVEVLVEGESKNNPEVLAGYTEKSKLV 472 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV++T K TL GE+V Sbjct: 473 NFKAPKSVIGQLVKVKVTKAKTWTLNGEMV 502 >gi|210621065|ref|ZP_03292450.1| hypothetical protein CLOHIR_00393 [Clostridium hiranonis DSM 13275] gi|210155049|gb|EEA86055.1| hypothetical protein CLOHIR_00393 [Clostridium hiranonis DSM 13275] Length = 489 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 174/444 (39%), Positives = 274/444 (61%), Gaps = 18/444 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GCQMN +DS + M GYER + ADLI+ NTC +RE A KVY LG+++ Sbjct: 54 TFGCQMNEHDSEELAYMLERMGYERTEKLYKADLIIYNTCAVRENAEMKVYGNLGQLKFT 113 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERARFGK 147 K ++ D+ + + GC+ Q EEI + VN++ G YR PELL ++ GK Sbjct: 114 K----RKNPDVKIALCGCMMQQPHVVEEIKKNHKHVNLMFGTHNLYRFPELLYKQMTTGK 169 Query: 148 RVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +V+ + V+ + +++G + NRK + AF+ I GC+ FCT+C+VPYTRG E SR Sbjct: 170 NIVEV-WDVDGE-----VIEGLHSNRKFELKAFVNIMYGCNNFCTYCIVPYTRGRERSRE 223 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 ++DE ++L+ NG E+TLLGQNVN++ GK L+ TF++LL +++I+GL R+R+ Sbjct: 224 PQDILDEIKELVANGTKEVTLLGQNVNSY-GKTLEN-PMTFAELLREVNKIEGLERIRFM 281 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHP+D+SD +I A D + + +LHLPVQ GS +LK MNR +T +Y I+ ++R Sbjct: 282 TSHPKDLSDEVIYAMRDCEKICEFLHLPVQCGSSALLKKMNRHYTKEDYLNIVRKVRKEI 341 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDIA S+D +VGFPGET +D + T+D++++ Y AF+F YS R GTP + M +Q+ E+ Sbjct: 342 PDIAFSTDIMVGFPGETLEDVQDTIDVIEETKYDSAFTFIYSKREGTPAAKMEDQIPEDE 401 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKNH 445 K R + + + N + +++EVL+E + K+K + G++ ++V +S Sbjct: 402 KHRRFDEVLEHVNRIVNDINYSYQDKVVEVLVEGRSAKDKNRYTGKTRQNKTVNFDSNED 461 Query: 446 N-IGDIIKVRITDVKISTLYGELV 468 N IG ++ V+IT + +L GE+V Sbjct: 462 NLIGKLVNVKITQPRSFSLNGEVV 485 >gi|325295239|ref|YP_004281753.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065687|gb|ADY73694.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Desulfurobacterium thermolithotrophum DSM 11699] Length = 437 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 170/444 (38%), Positives = 272/444 (61%), Gaps = 13/444 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++K++GCQMNV DS +M + S GYE+ + ++ADLI++NTC +R K K YSF+ Sbjct: 2 KKFYIKTFGCQMNVNDSEKMAGILRSLGYEKTDLPEEADLIIVNTCSVRAKPDNKAYSFI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++ +K KE + ++ V GCV Q E E ILR V++V G + ++ EL++RA+ Sbjct: 62 GNLKKIK----KEKPETIIAVGGCVPQKEKESILRFKH-VDLVFGTFNFMKIGELIKRAK 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +RVV+ S + +++ ++D + A++T+Q GC++FC++C+VP+TRG E S Sbjct: 117 -KERVVEILNSKIPEEDKVPLIDSYL--ENPYVAYVTVQRGCNRFCSYCIVPFTRGRERS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 V+ E ++L + GV E+ LLGQNV+ + +G+D +DLLY +SE++G+ R+R Sbjct: 174 VKPELVLKEVKRLAERGVKEVHLLGQNVDFYNYEGID-----LADLLYMVSEVEGIERIR 228 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP + +++A +++ + PY+HLP QSGS +IL+ MNR +T EY + + ++ Sbjct: 229 FTTSHPCGFNRKIVEAMKNIEKVCPYVHLPPQSGSTKILERMNRGYTREEYTEKVMMLKE 288 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P +A+S DFIVGFPGET DF T+ LV+ + Q F F+YSPR T SN + V + Sbjct: 289 EIPKVALSGDFIVGFPGETTKDFEETLSLVETCVFDQGFVFEYSPRPFTKASNFKDDVPK 348 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 K RL LQ LR Q N +G I EVL+E + +L GR+ + VV + Sbjct: 349 EEKNRRLQELQNLLRVQAEEKNKKRLGCIEEVLVEGKSPKGKELSGRTKDNKLVVFDGSE 408 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 +G +++ IT+ L G+L+ Sbjct: 409 ELVGKFVEIEITETSPFFLKGKLL 432 >gi|299144078|ref|ZP_07037158.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518563|gb|EFI42302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 480 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 179/449 (39%), Positives = 271/449 (60%), Gaps = 17/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + ++GCQMN +DS ++E + GYE + + D+DL+VLNTC +R A +KVY L Sbjct: 43 KRAKIITHGCQMNEHDSEKIEWILEKMGYEIIQDLADSDLVVLNTCSVRHSAEDKVYGQL 102 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE--ILRRSPIVNVVVGPQTYYRLPELLER 142 G + K+ +L V V GC+ Q + ++ + V+++ G ++LPELL + Sbjct: 103 G----VLKHLKKKKNNLKVAVCGCMMQRKESRNYVIDKFENVDIIFGTNNIWKLPELLLK 158 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG--GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 +T+ D E S +D G NR +++ I GC+ FCTFC+VPYTRG Sbjct: 159 N------YETNKLSMDIEENFSGIDDTLGANRLYPYKSYVNIMYGCNNFCTFCIVPYTRG 212 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR ++ E L NG E+TLLGQNVN++ GK L + +F++LLY ++EI G+ Sbjct: 213 REQSRDPRDIIREIELLAKNGTKEVTLLGQNVNSY-GKNLQ-KPISFANLLYRINEIDGI 270 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHP+D+SD LI A+ DLD L +LHLPVQSGS RILK MNR+++ +Y + ID Sbjct: 271 DRIRFMTSHPKDISDELIYAYRDLDKLCNFLHLPVQSGSSRILKLMNRKYSKEDYLKKID 330 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +I++V P+IA+ +D +VGFPGET++DF T+DLV K+ Y +F+F YS R GT + E Sbjct: 331 KIKTVNPNIALCTDLMVGFPGETEEDFMETIDLVKKVQYDTSFTFIYSKREGTFAAKSNE 390 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVV 439 Q+ + +K +R L L Q N +G+ ++VL+E K + V GR+ + V Sbjct: 391 QIPDKIKHDRFQKLIDVLYPIQFEKNKKNIGRNVKVLVEDVSKNNSENVSGRTEEFKLVN 450 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG I+ V+ITD +L GE++ Sbjct: 451 FRADKNKIGKIVNVKITDTNTFSLTGEII 479 >gi|311068224|ref|YP_003973147.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus atrophaeus 1942] gi|310868741|gb|ADP32216.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus atrophaeus 1942] Length = 509 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 176/450 (39%), Positives = 266/450 (59%), Gaps = 19/450 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE NS+DDA++I+LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK KE DL++ V GC++Q E IL++ P V+++ G +RLPELL Sbjct: 126 GHLKTLK----KENPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSE 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V R+ + ++ I GCDKFCT+C+VPYTRG Sbjct: 182 AYLSKEMVIEVWSKEGDVIENLPKV-----RRGKIKGWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++ E R+L G EITLLGQNVNA+ GK D DL+ L +I + Sbjct: 237 ERSRRPEEIIQEVRRLASEGYKEITLLGQNVNAY-GKDFDDITYGLGDLMDELRKID-IP 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D L++ G L+ ++HLPVQSGS +LK M R++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLVEVLGKGGNLLDHIHLPVQSGSSEVLKLMARKYDRARYMELVGK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ P+ ++++D IVGFP ETD+ F T+ L ++ + A++F YSPR GTP + M + Sbjct: 355 IKAAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQ---KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 V VK ERL L K++ +++ + V +++ K+ E L G + + V Sbjct: 415 VPMRVKKERLQRLNDLVKEISAKKMKEYEGEVVEVLVEGESKNNPE--ILAGYTRKSKLV 472 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ V+I K +L GE+V Sbjct: 473 NFKGPKEAIGKLVHVKIHQAKTWSLDGEMV 502 >gi|52080307|ref|YP_079098.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus licheniformis ATCC 14580] gi|52785683|ref|YP_091512.1| YmcB [Bacillus licheniformis ATCC 14580] gi|319645912|ref|ZP_08000142.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2] gi|81385531|sp|Q65JE5|MIAB_BACLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|52003518|gb|AAU23460.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|52348185|gb|AAU40819.1| YmcB [Bacillus licheniformis ATCC 14580] gi|317391662|gb|EFV72459.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2] Length = 509 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 174/448 (38%), Positives = 260/448 (58%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE +S +DA++I+LNTC IRE A KV+ + Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDSTEDANVILLNTCAIRENAENKVFGEI 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK K+ DL++ V GC++Q E IL++ P V+++ G +RLPELL Sbjct: 126 GHLKALK----KDNPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSE 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V G + ++ I GCDKFCT+C+VPYTRG Sbjct: 182 AYLSKEMVIEVWSKEGDVIENLPKVRTG-----KIKGWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R+L G EITLLGQNVNA+ GK + + L+ L +I + Sbjct: 237 ERSRRPEDIIQEVRRLAAEGYKEITLLGQNVNAY-GKDFEDMEYGLGHLMDELRKID-IP 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS +LK M R++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSDVLKLMARKYDRERYLELVAK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ ++++D IVGFP ETD+ F T+ L ++ + A++F YSPR GTP + M + Sbjct: 355 IKKAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + E GQ++EVL+E K L G + + V Sbjct: 415 VPMRVKKERLQRLNEVVNEISAKKMKEYEGQVVEVLVEGESKNNPDILAGYTRKNKLVNF 474 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ V+I K +L GE+V Sbjct: 475 KGPKEAIGQLVNVKIHQAKTWSLDGEMV 502 >gi|326791331|ref|YP_004309152.1| RNA modification enzyme, MiaB family [Clostridium lentocellum DSM 5427] gi|326542095|gb|ADZ83954.1| RNA modification enzyme, MiaB family [Clostridium lentocellum DSM 5427] Length = 470 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 172/447 (38%), Positives = 264/447 (59%), Gaps = 15/447 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++ + ++GCQMN DS ++E M GY + + ++AD I+ NTC +RE A K+Y LG Sbjct: 34 QYCISTFGCQMNARDSEKIEGMLEQIGYTKTENEEEADFIIYNTCCVRENAELKIYGRLG 93 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLE-R 142 ++ R K+ + ++ + GC+ Q + + + ++ ++++ G Y+LPELL+ R Sbjct: 94 ALK----GRRKKNPNFMIALCGCMMQQDIVLDTLKKKFNFIDIIFGTYNIYKLPELLQTR 149 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D S +D E L +RK A + I GC+ FCT+C+VPY RG E Sbjct: 150 LETKQNVIDIWDSYQDIVEDLPD-----SRKYDFKACVNIMYGCNNFCTYCIVPYVRGRE 204 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR +V E + L+ GV EI LLGQNVN++ GK LD E +F++LL ++ I+GL R Sbjct: 205 RSRKPEDIVTEIKALVSEGVKEIMLLGQNVNSY-GKTLD-EPISFAELLKQINAIEGLKR 262 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHP+D+SD LI+ D + P +HLP QSGS ++LK MNR +T Y +++ +I Sbjct: 263 IRFMTSHPKDLSDELIEVMASCDKICPSVHLPFQSGSTKLLKKMNRHYTKESYLELVRKI 322 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++ P + +++D IVGFPGET++DF TM++V+K+ YA AF+F YS R GTP + M +QV Sbjct: 323 KAAIPRVELTTDIIVGFPGETEEDFLDTMEVVEKVHYASAFTFIYSKRTGTPAATMEDQV 382 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441 E+V ER L + +Q + VGQ +EVL E+ K+ L GR+ V Sbjct: 383 PEDVTKERFNRLLALVNKQSAATLHKYVGQTVEVLFEEVSKQDDNVLSGRTDTGLLVNTP 442 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +G +KV I D K L GEL Sbjct: 443 APKEYVGKFVKVHIVDNKTHYLIGELA 469 >gi|323703565|ref|ZP_08115210.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum nigrificans DSM 574] gi|323531468|gb|EGB21362.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum nigrificans DSM 574] Length = 459 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 179/448 (39%), Positives = 265/448 (59%), Gaps = 15/448 (3%) Query: 25 QRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 Q+F+ V ++GCQMN DS + M GY S ++AD+I+LNTC +RE A KV+ Sbjct: 17 QKFYHVITFGCQMNERDSESLAGMLEDMGYLPTESREEADIIILNTCCVRETAESKVFGL 76 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLE 141 LGR+R LK ++ DL++ VAGC++Q E ++I P V+++ G + LP +++ Sbjct: 77 LGRLRQLKVAK----PDLIIGVAGCMSQQEEVAKKIRHSFPFVDIIFGTHNIHELPRMIQ 132 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + R + V ++ E V RK + A++TI GC+ FCT+C+VPY RG Sbjct: 133 QVRENQEAVLEVWATEKGIAENVPV----RRKDKLKAWVTIMYGCNNFCTYCIVPYVRGR 188 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR+ +++E + L+ G E+TLLGQNVN++ GK L + F+DLL L +I GL Sbjct: 189 ERSRNPENIIEEIKGLVAQGYKEVTLLGQNVNSY-GKDLQMD-YRFADLLLDLDKITGLK 246 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHPRD LI + + + HLP Q+GS+RILK MNR +T Y Q+ID Sbjct: 247 RIRFMTSHPRDFDQRLIDVIASTNKVCEHFHLPAQAGSNRILKLMNRGYTREHYLQLIDN 306 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR P +I+SD +VGFPGET++DF T+DLV ++ Y AF+F Y+ R GTP + M EQ Sbjct: 307 IRKAIPGASITSDIMVGFPGETEEDFADTLDLVRRVRYDSAFTFVYNIRSGTPAAKM-EQ 365 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 V E VK+ R+ L + + N G+++EVL+E K KL GRS + VV Sbjct: 366 VPEEVKSARIQKLIDLQNQISLENNRQEEGKVLEVLVEGETKTNPDKLAGRSRTNKLVVF 425 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + G ++ ++IT +++ L GELV Sbjct: 426 DGSPDLTGQLVPIKITKGRLNLLEGELV 453 >gi|87310113|ref|ZP_01092245.1| probable MiaB protein-putative tRNA-thiotransferase [Blastopirellula marina DSM 3645] gi|87287103|gb|EAQ79005.1| probable MiaB protein-putative tRNA-thiotransferase [Blastopirellula marina DSM 3645] Length = 475 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 176/471 (37%), Positives = 270/471 (57%), Gaps = 31/471 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+R ++ + GCQMN+ DS + QGYE ++AD ++ NTC +RE+A K YS Sbjct: 1 MPKRLYIDTVGCQMNMLDSELVVASLRQQGYELTTKPEEADTLLFNTCSVREQAENKTYS 60 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LG +R+LK S ++ ++ V GC+AQ ++I +R+P V++VVGP +++P L+++ Sbjct: 61 HLGVLRDLKASHPEK----IIGVMGCMAQNHQKKIFQRAPYVDLVVGPGQLHQIPSLIDK 116 Query: 143 ARFGK-RVVDTDYSVED--------KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193 G+ R ++ D E + R A++ IQ GCDKFCT+C Sbjct: 117 VAAGEGRQIEVSLGRRDGSRVEIARSHESFDPLRDPEMRPTPFQAYVRIQIGCDKFCTYC 176 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 +VP RG E R ++ E R L D G EITL+GQ VN++RG+ G+ +DLL + Sbjct: 177 IVPSVRGPEQGRRPEDILAETRHLADQGTVEITLVGQTVNSYRGQDAAGKSWNLADLLAA 236 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 + EI G+ R+++ T++P+DM+D L+ A +LD + PYLH+P QSGS+ +LK M R +T Sbjct: 237 IHEIDGIRRIKFVTNYPKDMTDELLTAVRELDKVSPYLHVPAQSGSNDMLKRMKRGYTVE 296 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 +YR ++ RIR P A+SSDFIVGF GET+ +F+ T+DLV++ + +F FKYS R GT Sbjct: 297 QYRDMMRRIREGVPGAAVSSDFIVGFCGETEAEFQMTVDLVEECRFKNSFIFKYSEREGT 356 Query: 374 PGSNM-LEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-- 427 G+ + L+ V VK ER LL +Q ++ + N +G + VL+E K K Sbjct: 357 RGAELFLDDVPFTVKQERNNTLLEIQNRI---SLEDNQKQIGNTLNVLVEGISKAAAKKE 413 Query: 428 ---------LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L GR+ + VV + IG I+ V I D TL+GE++ Sbjct: 414 DADDSPVVQLTGRTHCDRIVVFDGNRRQIGQILPVAIYDSASHTLFGEVIT 464 >gi|182435525|ref|YP_001823244.1| hypothetical protein SGR_1732 [Streptomyces griseus subsp. griseus NBRC 13350] gi|229891007|sp|B1VXU5|MIAB_STRGG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|178464041|dbj|BAG18561.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 506 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 182/464 (39%), Positives = 271/464 (58%), Gaps = 29/464 (6%) Query: 15 SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHI 72 S+ VD V + + V++YGCQMNV+DS R+ + GY R S DAD++V NTC + Sbjct: 7 SEAVD---VQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAV 63 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 RE A K+Y LGR+ +K R + + V GC+AQ + + I++R+P V+VV G Sbjct: 64 RENADNKLYGNLGRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHN 119 Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 +LP LLERAR + ++ S+E L R+ A+++I GC+ CT Sbjct: 120 IGKLPVLLERARVQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCT 174 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDL 250 FC+VP RG E R ++ E L+ GVCEITLLGQNVNA+ G D G++ FS L Sbjct: 175 FCIVPALRGKEKDRRTGDILAEIEALVAEGVCEITLLGQNVNAY---GSDIGDREAFSKL 231 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L + I+GL R+R+T+ HPRD +D +I A + +MP LH+P+QSGSD +LK+M R + Sbjct: 232 LRACGRIEGLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDTVLKAMRRSY 291 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + II+++R+ P+ AIS+D IVGFPGET++DF TM V + +A AF+F+YS R Sbjct: 292 RQERFLGIIEKVRAAMPEAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKR 351 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLI-EKHGKEKG- 426 GTP ++M Q+ + V ER + L ++Q+S+ N VG+ ++V++ E G++ G Sbjct: 352 PGTPAADMDGQIPKEVVQERYMRLSAL--QEQISWDENKKQVGRTLDVMVAEGEGRKDGA 409 Query: 427 --KLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 +L GR+P + V + GD++ V IT L E Sbjct: 410 TQRLSGRAPDNRLVHFTQPEKAVRPGDVVTVEITYAAPHHLLAE 453 >gi|291448226|ref|ZP_06587616.1| RNA modification enzyme [Streptomyces roseosporus NRRL 15998] gi|291351173|gb|EFE78077.1| RNA modification enzyme [Streptomyces roseosporus NRRL 15998] Length = 506 Score = 310 bits (794), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 183/464 (39%), Positives = 271/464 (58%), Gaps = 29/464 (6%) Query: 15 SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHI 72 S+ VD V + + V++YGCQMNV+DS R+ + GY R S DAD++V NTC + Sbjct: 7 SEAVD---VQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAV 63 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 RE A K+Y LGR+ +K R + + V GC+AQ + + I++R+P V+VV G Sbjct: 64 RENADNKLYGNLGRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHN 119 Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 +LP LLERAR + ++ S+E L R+ A+++I GC+ CT Sbjct: 120 IGKLPVLLERARIQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCT 174 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDL 250 FC+VP RG E R ++ E L+ GV EITLLGQNVNA+ G D G++ FS L Sbjct: 175 FCIVPALRGKEKDRRTGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKL 231 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L + +I+GL R+R+T+ HPRD +D +I A + +MP LH+P+QSGSD ILK+M R + Sbjct: 232 LRACGKIEGLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDSILKAMRRSY 291 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + II+++R+ PD AIS+D IVGFPGET++DF TM V + +A AF+F+YS R Sbjct: 292 RQERFLGIIEKVRAAMPDAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKR 351 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLI-EKHGKEKG- 426 GTP ++M Q+ + V ER + L ++Q+S+ N VG+ ++V++ E G++ G Sbjct: 352 PGTPAADMDGQIPKEVVQERYMRLSA--LQEQISWDENKKQVGRTLDVMVAEGEGRKDGA 409 Query: 427 --KLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 +L GR+P + V + GD++ V IT L E Sbjct: 410 TQRLSGRAPDNRLVHFTQPEQAVRPGDVVTVEITYAAPHHLLAE 453 >gi|284929598|ref|YP_003422120.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [cyanobacterium UCYN-A] gi|284810042|gb|ADB95739.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [cyanobacterium UCYN-A] Length = 448 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 170/452 (37%), Positives = 277/452 (61%), Gaps = 23/452 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + + ++GCQMN DS RM + G++ + +D A+LI+ NTC IR+ A +KVYS+LG+ Sbjct: 9 YHIVTFGCQMNKADSERMAGILEDMGFQWTDVLDQANLILYNTCTIRDSAEQKVYSYLGK 68 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + L++ VAGCVAQ EGE+ILRR P +++V+GPQ L +LLE+ G Sbjct: 69 ----QAKRKHKDPSLILAVAGCVAQQEGEKILRRIPELDLVMGPQHVNYLGDLLEQVLKG 124 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++V T E + I++ +R +TA++ I GC++ C++CVVP RG+E S Sbjct: 125 NQIVAT--------EPIHIIEDITKPRRASKITAWVNIIYGCNERCSYCVVPSVRGLEQS 176 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIK 258 R+ + E + L G E+TLLGQN++A+ G+ L G + TF+DLLY + E+ Sbjct: 177 RTPEDICSEIKLLEQQGYKEVTLLGQNIDAY-GRDLPGTTETGRNQYTFTDLLYRIHEVS 235 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 + R+R+ TSHPR ++ LI A +L + + H+P QSG + ILK M R +T YRQ+ Sbjct: 236 NIKRIRFATSHPRYFTERLISACHELPNICEHFHIPFQSGDNDILKKMKRGYTHQRYRQL 295 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ID++R P+ +I++D IVGFPGET+ F T+ LV+ IG+ Q + YSPR GTP + Sbjct: 296 IDKVRYYMPNASITADAIVGFPGETEQQFENTLKLVEDIGFDQLNTAAYSPRPGTPAATW 355 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQS 437 EQVD+++K++RL L + ++ + +G+I E+L+E+ KE +++GR+ + Sbjct: 356 SEQVDDDIKSDRLQRLNHLVGQKAAENSRKYLGEIEEILVEQENPKENNQVMGRTRKNRL 415 Query: 438 VVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468 ++ G+++KV+IT+ + +L G+++ Sbjct: 416 TFFQGNIDDLRGELVKVKITEARPFSLTGKIL 447 >gi|296269109|ref|YP_003651741.1| RNA modification enzyme, MiaB family [Thermobispora bispora DSM 43833] gi|296091896|gb|ADG87848.1| RNA modification enzyme, MiaB family [Thermobispora bispora DSM 43833] Length = 498 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 179/443 (40%), Positives = 267/443 (60%), Gaps = 26/443 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ + V++YGCQMNV+DS R+ + S GY R + AD+IV NTC +RE A ++Y Sbjct: 12 PRTYEVRTYGCQMNVHDSERIAGLLESAGYVRAPEGEIADVIVFNTCAVRENADNRLYGN 71 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG +R +K +R + + V GC+AQ + EI+RR+P V+VV G LP LLERA Sbjct: 72 LGHLRPIKMAR----KGMQIAVGGCLAQKDRSEIIRRAPWVDVVFGTHNIGSLPALLERA 127 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201 R V + VE K E L KR A++ I GC+ CTFC+VP RG Sbjct: 128 R-----VAQEAQVEIK-EALETFPSTLPTKRESVYAAWVAISVGCNNTCTFCIVPSLRGK 181 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 E R ++ E R L+ GV E+TLLGQNVN + G++ G++ FS LL + EI+GL Sbjct: 182 ERDRRPGDILSEIRALVAEGVIEVTLLGQNVNTY---GVEFGDRQAFSKLLRACGEIEGL 238 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP +D +I A + +MP LH+P+QSGSDRIL++M R + A + I++ Sbjct: 239 ERVRFTSPHPAAFTDDVIAAMAETPNVMPSLHMPLQSGSDRILRAMRRSYRAERFLGILE 298 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R+ PD AIS+D IVGFPGET++DF+ T ++V + +A AF+F+YS R GTP + M Sbjct: 299 RVRAAIPDAAISTDIIVGFPGETEEDFQRTCEVVREARFAHAFTFQYSIRPGTPAAAMEN 358 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRSP 433 QV + V + +RL+ LQ+++ ++ N A VG+ +EVLI E G++ ++ GR+ Sbjct: 359 QVPKEVVQDRYDRLIALQEQISWEE---NKAQVGRTVEVLIAEGEGRKDDRTQRISGRAA 415 Query: 434 WLQSVVLNSKNHNIGDIIKVRIT 456 + V + + GD++ +T Sbjct: 416 DYRLVHVAPVDARPGDMVTAEVT 438 >gi|187779606|ref|ZP_02996079.1| hypothetical protein CLOSPO_03202 [Clostridium sporogenes ATCC 15579] gi|187773231|gb|EDU37033.1| hypothetical protein CLOSPO_03202 [Clostridium sporogenes ATCC 15579] Length = 450 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 173/445 (38%), Positives = 263/445 (59%), Gaps = 15/445 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +FF++++GCQMN DS ++ M + Y R ++AD+I+ NTC +RE A KVY LG Sbjct: 15 KFFIETWGCQMNEEDSEKLSGMLKRESYIRTEEREEADVIIFNTCCVRENAELKVYGNLG 74 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143 ++ LK + +L++ V GC+ Q G E I ++ P V++++G + L Sbjct: 75 ILKGLK----AKNPNLIIAVTGCMMQQAGMAETIKKKFPFVDIIIGTHNLHNFSNYLNEV 130 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V ED SI++ +RK + AF+TI GC+ FCT+C+VPY RG E Sbjct: 131 KKKHTSVLKIQEKED-----SIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGRE 185 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR+ + DE + L+ G EITLLGQNVN++ GK L+ TF++LL ++ I+GL R Sbjct: 186 RSRTPENIEDEIKNLVSKGYKEITLLGQNVNSY-GKDLE-PNVTFAELLKRVNTIEGLER 243 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHP+D++D +I+A D L +HLPVQSGS +LK MNR + +Y ++ +I Sbjct: 244 VRFMTSHPKDLTDDVIEAIAKCDKLCEQIHLPVQSGSSDMLKKMNRHYDREKYLDVVSKI 303 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + + P++A+S+D IVGFPGET+ DF T+ LV + Y AF+F YS R GTP + +QV Sbjct: 304 KKLIPNVALSTDIIVGFPGETEKDFEETLSLVKTVEYDSAFTFLYSIRKGTPAAKFDDQV 363 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLN 441 E+VK +R L + + E N A G+I EVL+E K ++ KL+GR+ + V Sbjct: 364 PEDVKHKRFNRLVEVVNEISAKKNKAYEGKIEEVLVEGTSKNDENKLMGRTRAGKLVNFI 423 Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466 +IG ++ V+IT +L GE Sbjct: 424 GNKESIGKLVNVKITKANSFSLTGE 448 >gi|320008158|gb|ADW03008.1| RNA modification enzyme, MiaB family [Streptomyces flavogriseus ATCC 33331] Length = 506 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 184/464 (39%), Positives = 271/464 (58%), Gaps = 29/464 (6%) Query: 15 SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHI 72 S+ VD V + + V++YGCQMNV+DS R+ + GY R S DAD++V NTC + Sbjct: 7 SEAVD---VQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAV 63 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 RE A K+Y LGR+ +K R + + V GC+AQ + + I+RR+P V+VV G Sbjct: 64 RENADNKLYGNLGRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVRRAPWVDVVFGTHN 119 Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 +LP LLERAR + V+ S+E L R+ A+++I GC+ CT Sbjct: 120 IGKLPVLLERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCT 174 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDL 250 FC+VP RG E R ++ E L+ GV EITLLGQNVNA+ G D G++ FS L Sbjct: 175 FCIVPALRGKEKDRRTGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKL 231 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L + I+GL R+R+T+ HPRD +D +I A + +MP LH+P+QSGSD ILK+M R + Sbjct: 232 LRACGTIEGLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDTILKAMRRSY 291 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + II+++R+ PD AIS+D IVGFPGET++DF TM V + +A AF+F+YS R Sbjct: 292 RQERFLGIIEKVRAAMPDAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKR 351 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLI-EKHGKEKG- 426 GTP + M Q+ + V ER + L ++Q+S+ N VG+ ++V++ E G++ G Sbjct: 352 PGTPAAEMEGQIPKEVVQERYMRLSAL--QEQISWDENKKQVGRTLDVMVAEGEGRKDGA 409 Query: 427 --KLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 +L GR+P + V + ++ GD++ V I+ L E Sbjct: 410 THRLSGRAPDNRLVHFTKPSEDVRPGDVVTVEISYAAPHHLLAE 453 >gi|56751740|ref|YP_172441.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus elongatus PCC 6301] gi|81301183|ref|YP_401391.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus elongatus PCC 7942] gi|81561774|sp|Q5N199|MIAB_SYNP6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|123755327|sp|Q31KL5|MIAB_SYNE7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|56686699|dbj|BAD79921.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81170064|gb|ABB58404.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus elongatus PCC 7942] Length = 452 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 173/456 (37%), Positives = 272/456 (59%), Gaps = 23/456 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+R+ + ++GCQMN DS RM + GY +DADL++ NTC IR+ A +KVYS Sbjct: 3 TPRRYHITTFGCQMNKADSERMAGILEDLGYIWSEEANDADLVLYNTCTIRDNAEQKVYS 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +LGR + R ++ DL ++VAGCVAQ EGE +LRR P +++V+GPQ RL +LL + Sbjct: 63 YLGR----QAERKRQQPDLTLIVAGCVAQQEGESLLRRVPELDLVMGPQHANRLADLLAQ 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRG 200 G +VV T E + I + +R +TA++ + GC++ CT+CVVP RG Sbjct: 119 VEAGSQVVAT--------EEVEIAEDITQPRRDSTITAWVNVIYGCNERCTYCVVPNVRG 170 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSL 254 E SR + + E +L G EITLLGQN++A+ G+ L G T +DLLY++ Sbjct: 171 REQSREPAAIRAEIEQLAAQGYREITLLGQNIDAY-GRDLPGSTPEGRHLHTLTDLLYTI 229 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 ++ G+ R+R+ TSHPR ++ LI+A +L + Y H+P QSG + +LK+M R +T Sbjct: 230 HDVPGIERIRFATSHPRYFTERLIRACAELPKVCEYFHIPFQSGDNDVLKAMARGYTVER 289 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 Y +I+++IR + PD AIS+D IV FPGET++ F T+ LV+++G+ + YSPR GTP Sbjct: 290 YLRIVEQIRDIIPDAAISADAIVAFPGETEEQFENTLKLVEQVGFDLVNTAAYSPRPGTP 349 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSP 433 +N Q+ E VK +RL L + + + +G+ EVLIE + + +++GR+ Sbjct: 350 AANAPNQLSEEVKQDRLQRLNHLVAQMAADRSQRYLGRTEEVLIEATNPRNPQQVMGRTR 409 Query: 434 WLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468 + V + + G ++ VRIT+ + +L G+++ Sbjct: 410 TNRLVFCDGTIAQLEGQLVPVRITETRAFSLTGQIL 445 >gi|15614935|ref|NP_243238.1| hypothetical protein BH2372 [Bacillus halodurans C-125] gi|81786524|sp|Q9KAB7|MIAB_BACHD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|10174992|dbj|BAB06091.1| BH2372 [Bacillus halodurans C-125] Length = 538 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 175/448 (39%), Positives = 261/448 (58%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F V++YGCQMN++DS M M G+E + DAD+I++NTC IRE A KV+ + Sbjct: 95 KKFLVRTYGCQMNIHDSENMAGMLKEMGFEATDETTDADVILINTCAIRENAENKVFGEI 154 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK +E +L++ V GC++Q EG I+++ ++++ G +RLP LL Sbjct: 155 GNLKQLK----REKPELVIGVCGCMSQEEGVVNRIMQKHQHIDMIFGTHNIHRLPHLLRN 210 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGI 201 A FGK ++ +S E IV+ + G T A++ I GCDKFCT+C+VPYTRG Sbjct: 211 ALFGKEMIIEVWSKEG-----DIVENMPRAREGKTQAWVNIMYGCDKFCTYCIVPYTRGK 265 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L G EITLLGQNVNA+ GK L DL+ + +I + Sbjct: 266 ERSRRPEDIIQEVRDLARQGYKEITLLGQNVNAY-GKDLADLDYGLGDLMDEIRKID-IP 323 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQ G+ ILK M R++T +Y ++ + Sbjct: 324 RVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQHGNSEILKLMARKYTREQYVELAQK 383 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ + ++D IVGFP ETD+ F T+ LV +I + AF++ YSPR GTP + M + Sbjct: 384 IKRAIPNASFTTDLIVGFPNETDEQFEDTLSLVREIEFDSAFTYIYSPREGTPAAKMKDN 443 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + + N +++EVL+E K+ L GR+ + V Sbjct: 444 VPMEVKRERLARLNALVNDISAQKNLEYQDKVVEVLVEGESKKDPNILAGRTRTNRLVNF 503 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IGDI+ V++T+ K +L GE+V Sbjct: 504 KGPKSVIGDIVYVKVTEAKTWSLNGEMV 531 >gi|148265155|ref|YP_001231861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacter uraniireducens Rf4] gi|229890547|sp|A5G670|MIAB_GEOUR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|146398655|gb|ABQ27288.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter uraniireducens Rf4] Length = 440 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 175/441 (39%), Positives = 262/441 (59%), Gaps = 9/441 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++++GCQMNV DS ++ + GY ADL++LNTC +R KA EKVY+ L + Sbjct: 7 LYLETFGCQMNVSDSEKIAALLKGIGYFPTQDSSQADLVILNTCSVRAKAEEKVYNHLVQ 66 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + LK R K G +++ V GCVAQ EGE +L P +++V G + LPEL+ A G Sbjct: 67 YKGLK--RKKPG--IILGVGGCVAQQEGERLLANVPHLDIVFGTHNLHLLPELVRAAEKG 122 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +R+ + + + L VD R GV+ F+T+ +GC+ FC++C+VPY RG EISR Sbjct: 123 ERLAEVGFIDNETRLDLFPVD---ERTDGVSRFVTVMQGCENFCSYCIVPYVRGREISRR 179 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + ++ E R + NGV E+TLLGQNVN++ G GE +F LL +S I G+ R+R+T Sbjct: 180 SADILGEVRGMAGNGVKEVTLLGQNVNSY-GLKSSGE-MSFIALLREVSLIPGIERIRFT 237 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHP+D S LI ++ L ++HLP QSGS+ +L +MNR +T EY I R+++ Sbjct: 238 TSHPKDFSQPLIDCFAEIPKLCRHIHLPAQSGSNAVLAAMNRGYTREEYLGSIARLKAAC 297 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P I I+ D IVGFPGET++DF+AT+ L++++ Y FSF YS R T + ++V ++ Sbjct: 298 PSIQITGDIIVGFPGETEEDFQATLSLMEEVRYTDVFSFIYSKRPETKAAGYADEVGQDE 357 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 K RL L R + N + VG + +VLIE + G+ GR+ + V L + Sbjct: 358 KQGRLSRLLDLQRRITLETNKSFVGTVQQVLIEGESRRGGQFYGRTSGNRVVNLAADVSL 417 Query: 447 IGDIIKVRITDVKISTLYGEL 467 +G I+ V IT ++L GEL Sbjct: 418 VGSIVNVMITRGDQNSLQGEL 438 >gi|332710909|ref|ZP_08430845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lyngbya majuscula 3L] gi|332350223|gb|EGJ29827.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lyngbya majuscula 3L] Length = 448 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 182/455 (40%), Positives = 277/455 (60%), Gaps = 23/455 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+R+ + ++GCQMN DS RM + G++ + ++ADLIV NTC IR+ A +KVYS+ Sbjct: 5 PRRYHITTFGCQMNKADSERMAGILEDIGFQWSENPNEADLIVYNTCTIRDNAEQKVYSY 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + R + DL +VVAGCVAQ EGE +LRR P V++V+GPQ RL +LL++ Sbjct: 65 LGR----QAKRKHQQPDLTLVVAGCVAQQEGEALLRRVPEVDLVMGPQHANRLGDLLDQV 120 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G ++V T E + IV+ +R ++A++ I GC++ C++CVVP RG+ Sbjct: 121 FDGNQLVAT--------EPIHIVEDITKPRRDSSISAWVNIIYGCNERCSYCVVPNVRGL 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLS 255 E SR+ + E +L G EITLLGQN++A+ G+ L G + T +DLLY +S Sbjct: 173 EQSRTPEAIRAEMEELGRLGYKEITLLGQNIDAY-GRDLPGVTESGRHQHTLTDLLYYVS 231 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + G+ RLR+ TSHPR + LI+A +L + + H+P QSG + ILK+M R +T +Y Sbjct: 232 NVPGIERLRFATSHPRYFVERLIRACHELPEVCEHFHIPFQSGDNDILKAMARGYTHQKY 291 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 R+II+ IR PD +IS+D IVGFPGET+ F T+ LV+ IG+ Q + YSPR GTP Sbjct: 292 RRIINTIRDYMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPA 351 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPW 434 + Q+ E VK +RL L + + + +G+I EVL+E ++ K+ +++GR+ Sbjct: 352 ALWENQLSEEVKCDRLQRLNHLVAVKAAERSQRYLGRIEEVLVEDQNPKDNTQVMGRTKG 411 Query: 435 LQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + + NH G+++ V+IT+ + +L GE V Sbjct: 412 NRLTFFSGDINHLKGELVLVKITEARAFSLTGERV 446 >gi|239944763|ref|ZP_04696700.1| hypothetical protein SrosN15_27475 [Streptomyces roseosporus NRRL 15998] gi|239991228|ref|ZP_04711892.1| hypothetical protein SrosN1_28246 [Streptomyces roseosporus NRRL 11379] Length = 497 Score = 309 bits (791), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 180/456 (39%), Positives = 267/456 (58%), Gaps = 26/456 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKV 80 V + + V++YGCQMNV+DS R+ + GY R S DAD++V NTC +RE A K+ Sbjct: 3 VQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAVRENADNKL 62 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 Y LGR+ +K R + + V GC+AQ + + I++R+P V+VV G +LP LL Sbjct: 63 YGNLGRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLL 118 Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 ERAR + ++ S+E L R+ A+++I GC+ CTFC+VP R Sbjct: 119 ERARIQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 173 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258 G E R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + +I+ Sbjct: 174 GKEKDRRTGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGKIE 230 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R+T+ HPRD +D +I A + +MP LH+P+QSGSD ILK+M R + + I Sbjct: 231 GLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDSILKAMRRSYRQERFLGI 290 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I+++R+ PD AIS+D IVGFPGET++DF TM V + +A AF+F+YS R GTP ++M Sbjct: 291 IEKVRAAMPDAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADM 350 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLI-EKHGKEKG---KLVGRS 432 Q+ + V ER + L ++Q+S+ N VG+ ++V++ E G++ G +L GR+ Sbjct: 351 DGQIPKEVVQERYMRLSA--LQEQISWDENKKQVGRTLDVMVAEGEGRKDGATQRLSGRA 408 Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 P + V + GD++ V IT L E Sbjct: 409 PDNRLVHFTQPEQAVRPGDVVTVEITYAAPHHLLAE 444 >gi|229092810|ref|ZP_04223948.1| hypothetical protein bcere0021_35610 [Bacillus cereus Rock3-42] gi|228690608|gb|EEL44389.1| hypothetical protein bcere0021_35610 [Bacillus cereus Rock3-42] Length = 457 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 168/403 (41%), Positives = 248/403 (61%), Gaps = 14/403 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S +DAD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKALK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGK 236 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L NG EITLLGQNVNA+ GK + + DL+ L ++ + Sbjct: 237 ERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDELRKV-DIA 294 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ G L+ ++HLPVQSGS +LK M R+++ Y +++ + Sbjct: 295 RIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRK 354 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ +++D IVGFP ETD+ F TM L ++G+ AF+F YSPR GTP + M + Sbjct: 355 IKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDN 414 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 V VK ERL L + + + ND GQI+EVL++ K+ Sbjct: 415 VPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKK 457 >gi|320103836|ref|YP_004179427.1| MiaB family RNA modification protein [Isosphaera pallida ATCC 43644] gi|319751118|gb|ADV62878.1| RNA modification enzyme, MiaB family [Isosphaera pallida ATCC 43644] Length = 633 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 177/423 (41%), Positives = 252/423 (59%), Gaps = 26/423 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+R F+++ GCQMNV DS + + GYE + AD I+ NTC +R+ A +KVYS Sbjct: 44 PRRLFIETVGCQMNVLDSELVVERLRRDGYELTSDPQQADTILFNTCSVRQHAEDKVYSA 103 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+R LK E ++ + V GC+AQ + + IL+R+P V+++VGP +PEL+ RA Sbjct: 104 LGRLRGLK----AEHPEVTIGVLGCMAQKDQKRILQRAPHVDLMVGPGQLEVVPELIARA 159 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYN----------RKRGVTAFLTIQEGCDKFCTFC 193 + G+R + T +S+ V +N RK AF+ I GCDKFCT+C Sbjct: 160 KNGERKL-TAFSLPRTAGSRDRVAASFNEFDPARRKEARKVPFQAFVRIMMGCDKFCTYC 218 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 +VP RG E SR ++V+E R L+D G E+TLLGQ VN++R K DG +F+DLL Sbjct: 219 IVPSVRGPEQSRHPDEIVEEVRNLVDQGTREVTLLGQTVNSYRHKTPDGRITSFADLLAK 278 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 L +I GL R+++ T++P DM+D L+ A DL + YLH+P QSG D++LK M R +T Sbjct: 279 LHDIDGLRRIKFVTNYPNDMTDELLAAIRDLPRISRYLHVPAQSGCDQVLKRMKRGYTVG 338 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 Y ++ RIR P+ A++SDFIVGF GET+ F+ T+DLV + + +F FKYSPR GT Sbjct: 339 LYNDMMARIRETLPEAAVTSDFIVGFCGETEASFQKTVDLVRRWRFKNSFIFKYSPREGT 398 Query: 374 PGSNML-EQVDENVKAER---LLCLQK--KLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 N+ + V E VK R LL +Q L +QQ A VG+ +E+L+E K K Sbjct: 399 KAYNLFPDDVPEAVKRRRNNELLAVQNAIALEDQQ-----AFVGRTVEILVEGPSKAHLK 453 Query: 428 LVG 430 G Sbjct: 454 AAG 456 >gi|306821117|ref|ZP_07454733.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550810|gb|EFM38785.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 475 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 174/447 (38%), Positives = 269/447 (60%), Gaps = 17/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F + ++GCQMN +DS ++ M + GYE N + DAD+++ NTC IRE A + + + Sbjct: 37 KKFIIVTFGCQMNEHDSENIKGMLTNMGYEETNKIYDADVVLYNTCAIRENAETRFFGNI 96 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++N+K K ++++ GC+ Q +E+ + VN++ G Y+ PELL Sbjct: 97 GALKNIK----KNKPNMIIATCGCMMQEPHIVKELTSKYKHVNIIFGTHNIYKFPELLYT 152 Query: 143 --ARFGKRVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + K V + ++ +IV+G + R+ AF+ I GC+ FCT+C+VP+TR Sbjct: 153 YISLIDKETVVDVWDIDG-----NIVEGLPSVRRYDFKAFVNIMYGCNNFCTYCIVPFTR 207 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR ++DE + L N V EITLLGQNVN++ D K +F LL ++++ Sbjct: 208 GRERSRLPKDILDEVKLLAQNNVKEITLLGQNVNSYGNNFTD--KYSFPMLLEDINKVDN 265 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+ TSHP+D+SD LI++ G LD L YLHLPVQ+GSD +LK MNR++TAY+Y + I Sbjct: 266 IRRIRFMTSHPKDISDELIESFGRLDKLCDYLHLPVQAGSDSVLKRMNRKYTAYDYMKKI 325 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++I+ V PDIA+++D IVGFPGET++DF+ T+ +V ++ Y AF F YS R GT M Sbjct: 326 EKIKKVVPDIALTTDIIVGFPGETEEDFQQTLKIVKEVEYDSAFMFMYSTRKGTAAEKME 385 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSV 438 + +DE +K +R L + E N +G I EVL+E K+ + L GR+ + + Sbjct: 386 DHIDEEIKKDRFNRLLETANEIAAKKNKQYLGNIEEVLVEGFSKKNESVLSGRNTKSKLI 445 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465 IG ++KV+ITDVK +L G Sbjct: 446 NFIGDETKIGQLVKVKITDVKSFSLNG 472 >gi|297559650|ref|YP_003678624.1| RNA modification enzyme, MiaB family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844098|gb|ADH66118.1| RNA modification enzyme, MiaB family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 496 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 172/441 (39%), Positives = 265/441 (60%), Gaps = 25/441 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS R+ + GY R AD++V NTC +RE A ++Y LG Sbjct: 7 YQVRTYGCQMNVHDSERLSGLLEDAGYARAAEDTTADIVVFNTCAVRENADNRLYGNLGH 66 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R +K++ + + V GC+AQ + EI+RR+P V+VV G LP LLER+R Sbjct: 67 LRPVKDANPG----MQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNIGSLPALLERSRVQ 122 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + V+ S+E L R+ A++++ GC+ CTFC+VP RG E R Sbjct: 123 REAQVEIAESLEHFPSTLP-----SRRESAYAAWVSVSVGCNNTCTFCIVPALRGKEQDR 177 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 V+ E R L+D GV EITLLGQNVNA+ G G G++ FS LL + EI+GL R+R+ Sbjct: 178 RPGDVLAEVRALVDEGVSEITLLGQNVNAY-GSGF-GDRQAFSKLLRACGEIEGLERVRF 235 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 T+ HPRD +D +I+A + +MP LH+P+QSGS R+LK+M R + + I++++R+ Sbjct: 236 TSPHPRDFTDDVIEAMAETPNVMPQLHMPLQSGSSRVLKAMRRSYRQERFLGIVEKVRAA 295 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P AI++D IVGFPGET++DF+ T+ +V + ++ AF+F+YS R GTP + M +QV Sbjct: 296 MPHAAITTDIIVGFPGETEEDFQETLHVVREARFSMAFTFQYSKRPGTPAATMDDQVPPE 355 Query: 386 V---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSP---WL 435 V + +RL+ LQ ++ ++ N VG+ +E+L+ E G++ G +L GR+P + Sbjct: 356 VVKDRYQRLVDLQDQISWEE---NQKLVGREVELLVAEGEGRKDGEHRRLSGRAPDNRLV 412 Query: 436 QSVVLNSKNHNIGDIIKVRIT 456 V + + GD + V +T Sbjct: 413 HFAVGDGDDPRPGDTVTVEVT 433 >gi|325846562|ref|ZP_08169477.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481320|gb|EGC84361.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 450 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 173/449 (38%), Positives = 269/449 (59%), Gaps = 19/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + ++GCQMN +DS R+ + GY + ++AD I+ NTC +RE A K+Y + Sbjct: 16 KKYNITTFGCQMNEHDSERISYILEDLGYTLTDDRNEADFILFNTCLVRENAELKLYGQV 75 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELL-E 141 ++ LK +E + ++ V+GC+ Q E I ++ V+++ G + LP+LL + Sbjct: 76 SSLKKLK----EENPEKIIAVSGCMMQTSVAREVIEKKHKEVDIIFGTKNINSLPDLLFK 131 Query: 142 RARFGKRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G+RV+D ++ +V+D + YN K A++ I GCD FC++C+VP +RG Sbjct: 132 YLETGERVIDVSEDNVKDDY-------VNYNSKNNFQAYVNIMTGCDNFCSYCIVPQSRG 184 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR S +++E L++NG EITLLGQNVN++ K TF +LL ++IKGL Sbjct: 185 REESRRPSHIIEEIENLVNNGYKEITLLGQNVNSYGNKS--DFNVTFPELLEKCAQIKGL 242 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR+TTSHP+D+SD LI+ + D + Y HLP+QSGSD++LK MNR++ +Y + Sbjct: 243 ERLRFTTSHPKDLSDDLIRVIKENDNICNYFHLPMQSGSDKVLKDMNRKYNKEQYLEKAR 302 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R P+IAIS+D IVG+P ET++DF+ T+D+ K+G+ AF+FKYSPR T + LE Sbjct: 303 KLREEIPNIAISTDIIVGYPTETEEDFQETLDVCRKVGFDTAFTFKYSPRPKTKAAK-LE 361 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 +DE + +R L L N VG+++EVL+E K K L GR+ + V Sbjct: 362 TIDEKIVQDRFDRLLDTLYPVFNEKNKEYVGKVVEVLLESESKNNKNVLTGRTDTFKLVH 421 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG I+KV+ITD T+ G LV Sbjct: 422 VEADKKLIGQIVKVKITDNTSFTISGHLV 450 >gi|158337776|ref|YP_001518952.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acaryochloris marina MBIC11017] gi|229890405|sp|B0C0E2|MIAB_ACAM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|158308017|gb|ABW29634.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acaryochloris marina MBIC11017] Length = 454 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 182/458 (39%), Positives = 283/458 (61%), Gaps = 35/458 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R+ + +YGCQMN DS RM + + GY+ + DDA+LI+ NTC IR+ A KVYS+L Sbjct: 6 RRYHITTYGCQMNKADSERMAGVLENMGYQWSENPDDANLILCNTCTIRDNAEHKVYSYL 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR K+++ DL +VVAGCVAQ EG+ +LRR P +++V+GPQ RL +LLE+ Sbjct: 66 GRQAKRKHAQ----PDLTLVVAGCVAQQEGDALLRRVPELDLVMGPQHANRLQDLLEQVA 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++V+ T E + IV+ +R VTA++ + GC++ CT+CVVP RG+E Sbjct: 122 SGQQVLAT--------EPIHIVEDITKPRRDSAVTAWVNVIYGCNERCTYCVVPNVRGVE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256 SR+ + E +L + G E+TLLGQN++A+ G+ L G + T +DLLY + + Sbjct: 174 QSRTPEAIRAEMVQLGEQGFKEVTLLGQNIDAY-GRDLPGTTSEGRHQHTLTDLLYFVHD 232 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + G+ R+R+ TSHPR ++ LI+A +L + + H+P QSG + +LK+M+R +T +YR Sbjct: 233 VPGIERIRFATSHPRYFTERLIQACYELPKVCEHFHIPFQSGDNDVLKAMSRGYTHEKYR 292 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +IID IR++ PD +IS+D IVGFPGET++ F TM LV+ I + + YSPR GTP + Sbjct: 293 RIIDNIRAIMPDASISADAIVGFPGETEEQFMNTMQLVEDIEFDLLNTAAYSPRPGTPAA 352 Query: 377 NMLEQVDENVKAERLLCLQK------KLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLV 429 Q+ E VKA+RL L + +LR Q+ + +I EVL+E ++ K+ +++ Sbjct: 353 LWDNQLSEEVKADRLQRLNRLVGVCAELRSQRYA------NRIEEVLVEDQNPKDPTQVM 406 Query: 430 GRSPWLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGE 466 GR+ + + G+II V++T+V+ +L GE Sbjct: 407 GRTRGNRLTFFPGNIEQLRGEIIAVKVTEVRSFSLTGE 444 >gi|329939964|ref|ZP_08289246.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces griseoaurantiacus M045] gi|329300790|gb|EGG44686.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces griseoaurantiacus M045] Length = 499 Score = 309 bits (791), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 178/460 (38%), Positives = 272/460 (59%), Gaps = 28/460 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKV 80 P+ + +++YGCQMNV+DS R+ + GY R +S DAD++V NTC +RE A ++ Sbjct: 5 APKSYEIRTYGCQMNVHDSERLSGLLEDAGYVRAPEDSDGDADVVVFNTCAVRENADNRL 64 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 Y LGR+ K SR + + V GC+AQ + + I++++P V+VV G +LP LL Sbjct: 65 YGNLGRLAPRKASRP----GMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLL 120 Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 ERAR + V+ S+E L R+ A+++I GC+ CTFC+VP R Sbjct: 121 ERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 175 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258 G E R V+ E L+ GV EITLLGQNVNA+ G D G++ FS LL + I+ Sbjct: 176 GKEKDRRPGDVLAEVEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGNIE 232 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R+T+ HPRD +D +I+A + +MP LH+P+QSGSD +LK+M R + Y I Sbjct: 233 GLERVRFTSPHPRDFTDDVIEAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGI 292 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I+++R+ P AI++D IVGFPGET++DF T+ +V + +AQAF+F+YS R GTP + M Sbjct: 293 IEKVRAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAATM 352 Query: 379 LEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGR 431 +Q+ + V + ERL+ LQ+++ ++ N VG+ +E+++ E G++ G +L GR Sbjct: 353 EDQIPKKVVQARYERLVALQEEISWEE---NKKQVGRTLELMVAEGEGRKDGATHRLSGR 409 Query: 432 SPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 +P + V + GD++ V +T L E V Sbjct: 410 APDNRLVHFTKPEQEVRPGDMVTVEVTYAAPHHLLSEGAV 449 >gi|194476570|ref|YP_002048749.1| hypothetical protein PCC_0084 [Paulinella chromatophora] gi|171191577|gb|ACB42539.1| hypothetical protein PCC_0084 [Paulinella chromatophora] Length = 470 Score = 309 bits (791), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 175/456 (38%), Positives = 271/456 (59%), Gaps = 27/456 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM + S GY+ S +ADL++ NTC IR+ A +KVYS+LGR Sbjct: 28 YWITTFGCQMNKADSERMAGILESIGYQIAPSEHEADLVLYNTCTIRDSAEQKVYSYLGR 87 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + ++++VAGCVAQ EG +LRR P +++V+GPQ RL LL + G Sbjct: 88 ----QAQRKRTNPHIILIVAGCVAQQEGASLLRRVPEIDLVMGPQQTNRLSYLLSQVENG 143 Query: 147 KRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++V+ T+ Y +ED I + R+ V ++ + GC++ CT+CVVP RG E S Sbjct: 144 QQVIATEESYILED------ITNA--RRESSVCGWVNVVYGCNERCTYCVVPSVRGKEQS 195 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIK 258 R + E L G E+TLLGQNV+A+ G+ L G T + LLY + E+K Sbjct: 196 RLPESIKMEMEILATQGFREVTLLGQNVDAY-GRDLAGISPEGRRHNTLTALLYFVHEVK 254 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R+R+ TSHPR ++ LI+A +L + + H+P QSG D +LK+M R + Y +I Sbjct: 255 GINRIRFATSHPRYFTERLIEACSNLSKVCEHFHIPCQSGDDEVLKTMARGYNVDRYYRI 314 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +DRIRS PD +IS+D IV FPGETD ++ T++LV+K+G+ Q + YSPR TP SN Sbjct: 315 VDRIRSRMPDASISADIIVAFPGETDTQYQRTLELVEKVGFDQVNTAAYSPRPNTPASNW 374 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS----- 432 QVDE +K ERL L + ++ + + +I E+LIE + K+ + +GR+ Sbjct: 375 SIQVDERIKVERLQQLNSLVEKKAFERSKRYLNRIEEILIEGLNPKDSNQFMGRTRSNRL 434 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + K++ GD++ V+I +++ +L G L+ Sbjct: 435 TFFPTHTSKGKSYTYGDLVMVKIKEIRAFSLTGTLL 470 >gi|169824439|ref|YP_001692050.1| 2-methylthioadenine synthetase [Finegoldia magna ATCC 29328] gi|302380704|ref|ZP_07269169.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna ACS-171-V-Col3] gi|229890534|sp|B0S1C0|MIAB_FINM2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|167831244|dbj|BAG08160.1| 2-methylthioadenine synthetase [Finegoldia magna ATCC 29328] gi|302311647|gb|EFK93663.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna ACS-171-V-Col3] Length = 461 Score = 309 bits (791), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 175/446 (39%), Positives = 271/446 (60%), Gaps = 16/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + + ++GCQMN +DS +++ + + G+E+ + DAD I+ NTC +RE A KVY LG Sbjct: 27 YSIITHGCQMNEHDSEKIKTLLENMGFEKSDEKLDADFIIFNTCLVRENAEMKVYGQLGA 86 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILR-RSPIVNVVVGPQTYYRLPELLERA- 143 ++NLK +E D+L+ V GC+ Q +I+R + P V++V G LP L++R Sbjct: 87 LKNLK----RENPDMLIAVCGCMMQTGPARDIIREKYPQVDIVFGVNNINSLPYLIDRHL 142 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK VVD + +D E ++I R ++ I GC+ FCT+C+VPY RG E Sbjct: 143 SSGKLVVDIERK-DDIDEDITI-----KRDNEYVGYVNIMTGCNNFCTYCIVPYARGREQ 196 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SRS+ ++ E ++++D G +ITLLGQNVN++ GK L+ TF++LL +++++GL RL Sbjct: 197 SRSVESILSEVKRMVDQGYKDITLLGQNVNSY-GKTLEN-PVTFTELLTKVNDVEGLERL 254 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD LI+A G LD + +HLP Q+GS+ +L+ M+RR+T Y + +++++ Sbjct: 255 RFLTSHPKDISDELIEAMGKLDKVCENIHLPFQAGSNSVLERMHRRYTKESYLEKVEKLK 314 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 I S+D IVGFPGET++DF+ T+D+V K+GY QAF+FKY+ R GT +QVD Sbjct: 315 KSVKGITFSTDIIVGFPGETEEDFQDTLDVVRKVGYEQAFTFKYNRRPGTKADLFEDQVD 374 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 E+VK +RL L N + +G I EVLIE K + + GR+ + V + Sbjct: 375 EDVKQDRLERLLDVAYPIFYEKNKSYLGTIQEVLIEGESKNNPEVMTGRTRTFKLVNVKC 434 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ +I D L GE+V Sbjct: 435 DKSYIGKLVNTKIVDFNSFALTGEMV 460 >gi|317129126|ref|YP_004095408.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cellulosilyticus DSM 2522] gi|315474074|gb|ADU30677.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cellulosilyticus DSM 2522] Length = 516 Score = 308 bits (790), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 175/448 (39%), Positives = 262/448 (58%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F +++YGCQMN +DS M + + G+E ++ DDAD+I+LNTC IRE A KV+ + Sbjct: 73 KKFLIRTYGCQMNEHDSENMAGILLNMGFESTSNSDDADVILLNTCAIRENAENKVFGEI 132 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ +K R +L+V V GC++Q E IL++ V+++ G +RLP LL+ Sbjct: 133 GHLKTMKRER----PELIVGVCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPTLLKN 188 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K +V +S E D E + RK + ++ I GCDKFCT+C+VPYTRG Sbjct: 189 AIFNKEMVVEVWSKEGDIIENMPRA-----RKGQIQGWVNIMYGCDKFCTYCIVPYTRGK 243 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++E R L NG EITLLGQNVNA+ GK L DL+ + +I + Sbjct: 244 ERSRRPEDIIEEVRHLARNGYKEITLLGQNVNAY-GKDLVDMDYGLGDLMDEIRKID-IP 301 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP+D D LI+ L+ ++HLPVQSG+ +LK M R++T EY + + Sbjct: 302 RVRFTTSHPKDFDDHLIEVLAKGGNLVEHIHLPVQSGNSDVLKLMARKYTREEYVTLAKK 361 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P + ++D IVGFP ETD F T+ LV ++ Y A+++ YSPR GTP + M + Sbjct: 362 IKEAIPHASFTTDIIVGFPNETDAQFEDTLSLVREMEYDSAYTYVYSPREGTPAAKMNDN 421 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 + VK ERL L + E N + G+++EVL+E K+ L GR+ + V Sbjct: 422 IPMEVKKERLQRLNALVNEISAEKNKSYQGRVVEVLVEGESKKNPDILAGRTRTNRLVNF 481 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +IG+I+ V+IT+ K +L G +V Sbjct: 482 KGAKSSIGEIVYVKITEAKSWSLDGHVV 509 >gi|297202829|ref|ZP_06920226.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sviceus ATCC 29083] gi|297148220|gb|EFH28901.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sviceus ATCC 29083] Length = 508 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 178/456 (39%), Positives = 268/456 (58%), Gaps = 28/456 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVY 81 P+ + V++YGCQMNV+DS R+ + GY S DAD++V NTC +RE A ++Y Sbjct: 16 PKTYEVRTYGCQMNVHDSERLSGLLEEAGYVPAPEGSDGDADVVVFNTCAVRENADNRLY 75 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 LGR+ K SR + + V GC+AQ + + I++R+P V+VV G +LP LLE Sbjct: 76 GNLGRLAPRKASRP----GMQIAVGGCLAQKDRDTIVQRAPWVDVVFGTHNIGKLPVLLE 131 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 RAR + V+ S+E L R+ A+++I GC+ CTFC+VP RG Sbjct: 132 RARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRG 186 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259 E R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + I+G Sbjct: 187 KEKDRRTGDILAEIEALVGEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGSIEG 243 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+T+ HPRD +D +I+A + +MP LH+P+QSGSD +LK+M R + Y II Sbjct: 244 LERVRFTSPHPRDFTDDVIEAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGII 303 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +++R+ PD AIS+D IVGFPGET++DF TM +V + + AF+F+YS R GTP + M Sbjct: 304 EKVRAAMPDAAISTDIIVGFPGETEEDFEQTMHVVRQARFTNAFTFQYSKRPGTPAATMD 363 Query: 380 EQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRS 432 Q+ + + + ERL+ LQ+++ ++ N VG+ +E+++ E G++ G +L GR+ Sbjct: 364 GQIPKEIVQSRYERLVALQEEISWEE---NKKQVGRTLELMVAEGEGRKDGATHRLSGRA 420 Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 P + V + + GD++ V IT L E Sbjct: 421 PDNRLVHFTKPDQEVRPGDVVTVEITYAAPHHLLAE 456 >gi|329956412|ref|ZP_08297009.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides clarus YIT 12056] gi|328524309|gb|EGF51379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides clarus YIT 12056] Length = 455 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 172/451 (38%), Positives = 271/451 (60%), Gaps = 20/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD + +NTC IR+ A +K+ + L Sbjct: 18 KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK K+ +L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 78 EFFHSLK----KKKKNLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 132 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 133 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + DGE TF LL +++E VR Sbjct: 188 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKADGEVITFPALLRTVAESAPGVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ ++ + ++HLPVQSGS RILK MNR++T Y + +D I Sbjct: 248 IRFTTSHPKDMSDETLQVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVDAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD +S+D GF ET++D R ++ L+++ GY AF FKYS R GT S L + Sbjct: 308 RRIIPDCGLSTDIFSGFHSETEEDHRLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDD 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N CVG+ EVL+E K + +L GR+ + Sbjct: 368 VPEEVKIRRLNEIIALQNRLSAEA---NARCVGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + H GD + V+IT+ +TL GE V Sbjct: 425 VVFDRGTHRTGDFVTVKITESSSATLKGEEV 455 >gi|308373494|ref|ZP_07667593.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium tuberculosis SUMu005] gi|308375495|ref|ZP_07668037.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis SUMu007] gi|308337478|gb|EFP26329.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium tuberculosis SUMu005] gi|308346063|gb|EFP34914.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis SUMu007] Length = 515 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 172/462 (37%), Positives = 269/462 (58%), Gaps = 27/462 (5%) Query: 23 VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P R + V++YGCQMNV+DS R+ + + GY R +AD++V NTC +RE A ++Y Sbjct: 25 APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 84 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L + R + D+ + V GC+AQ + + +LRR+P V+VV G LP LLE Sbjct: 85 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 140 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 RAR K V+ +++ L +R+ A+++I GC+ CTFC+VP RG Sbjct: 141 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 195 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256 E+ RS + ++ E R L+++GV E+TLLGQNVNA+ L + F++LL + + Sbjct: 196 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 255 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I GL R+R+T+ HP + +D +I+A + P LH+P+QSGSDRIL++M R + A Y Sbjct: 256 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 315 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 II+R+R+ P AI++D IVGFPGET++DF AT+D+V + +A AF+F+YS R GTP + Sbjct: 316 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 375 Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429 + Q+ + V + ERL+ LQ+++ + N A VGQ +EVL+ K ++ Sbjct: 376 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 432 Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 GR+ + V + + GD+I ++T+ L + V Sbjct: 433 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 474 >gi|311233220|gb|ADP86074.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris RCH1] Length = 476 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 179/452 (39%), Positives = 261/452 (57%), Gaps = 26/452 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F ++++GCQMNV DS + +G+ +A L ++NTC +R+K +KVYS LGR Sbjct: 33 FHIETFGCQMNVNDSDWLARALMERGFSPA-PFGEARLTIVNTCSVRDKPEQKVYSLLGR 91 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--AR 144 IR + + D V V GCVAQ G R P V +V G P+ L+R Sbjct: 92 IRQATSKK----PDAFVAVGGCVAQQIGSGFFSRFPQVRLVFGTDGLAMAPQALDRLVEE 147 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++ D+S ED ER +++ G + F+ I +GCD FC +C+VPYTRG + S Sbjct: 148 PDLKLSLLDFS-EDYPERDAVLGQG---AVPASVFVNIMQGCDNFCAYCIVPYTRGRQKS 203 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+ ++DE R L+D G EITLLGQNVN++ G+ G+ TF+ LL+ ++ + GL RLR Sbjct: 204 RATGTILDECRALLDRGAREITLLGQNVNSF-GQDSHGDGTTFAQLLHKVAALPGLERLR 262 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + T HP+D++ +++A G L L P LHLP+Q+GSDRILK M RR+ Y +I+D +R+ Sbjct: 263 FVTPHPKDIAPEVVEAFGTLPNLCPRLHLPLQAGSDRILKLMGRRYDMARYLRIVDDLRA 322 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDI +SSD IVGFPGET++DF TMD ++ +GYA ++SF YS R GT + +++ Sbjct: 323 ARPDIVLSSDIIVGFPGETEEDFMETMDALETVGYAASYSFCYSDRPGTRAEMLPDKLSR 382 Query: 385 NVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIE----KHGKEKGKLVGRSPW-- 434 VK ERL ++L+ Q + C VG+ +EVL+E K G E GR P+ Sbjct: 383 EVKLERL----ERLQTLQNRLTERCLQDMVGRKVEVLLEGMSRKPGDEGDSWQGRDPYGN 438 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 L +V L + G + V + K +L E Sbjct: 439 LVNVALPQGSDVRGRFLPVVVAQAKKHSLLAE 470 >gi|224369269|ref|YP_002603433.1| MiaB [Desulfobacterium autotrophicum HRM2] gi|223691986|gb|ACN15269.1| MiaB [Desulfobacterium autotrophicum HRM2] Length = 460 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 174/409 (42%), Positives = 249/409 (60%), Gaps = 15/409 (3%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 ++ + GCQMN YD+ R+ + GY + N + AD+IV NTC IREKA EK +SFLGR+ Sbjct: 17 YIYTIGCQMNTYDTERLFFILGGLGYVKTNDLHRADIIVCNTCSIREKAQEKAFSFLGRV 76 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 LK ++ L+ ++ GCVAQ E EE+ +R+ +++V+G Q + RL + G+ Sbjct: 77 PPLKKAK----PHLITIMTGCVAQQEAEEVFKRNACIDIVLGTQAFSRLGGHIMNVLNGR 132 Query: 148 -RVVDTDYS--VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++ D + S + + S +D N K V+ F+TI +GCD FCT+CVVPY RG E S Sbjct: 133 GQITDVEDSPAIYEAMPDFSFID---NDK--VSRFVTIMQGCDNFCTYCVVPYVRGRERS 187 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+ +V+E L D GV E+TLLGQNVN++ G + C+FSDLL +S + G+ R+R Sbjct: 188 RTPESIVEEISILADAGVKEVTLLGQNVNSY---GQKEQICSFSDLLEQISRVSGIERIR 244 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D+SD LI A D+D + LHLPVQSGS+RILK MNR +T +Y + + ++R Sbjct: 245 FATSHPKDLSDDLIYAIRDIDKVCNQLHLPVQSGSNRILKKMNRGYTKEQYLERVGKLRK 304 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P IA+SSD I+GFP ET DF TMDLV ++ + F+F YS R P S + V++ Sbjct: 305 NCPSIALSSDMIIGFPSETRADFDETMDLVRRVEFDGIFAFAYSDRPQAPASKFSDGVED 364 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 K ERL L + E N A VG +VL+E ++K G +P Sbjct: 365 AEKMERLNELIQFQDEMTHQKNQALVGAWEQVLVEGLSQKKRHDEGENP 413 >gi|332976877|gb|EGK13699.1| tRNA-I(6)A37 modification enzyme MiaB [Desmospora sp. 8437] Length = 495 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 177/448 (39%), Positives = 266/448 (59%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ +K+YGCQMNV+DS + + GY ++A +I++NTC IRE A +KV+ + Sbjct: 49 KKYLIKTYGCQMNVHDSETIAGILELMGYRPTEVEEEAAVILINTCAIRENAEDKVFGEI 108 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 GR++ LK E +L++ + GC++Q E IL++ V+++ G +RLP LL Sbjct: 109 GRLKTLKT----EKPELVLGMCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPHLLRE 164 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V R+ G+ A++ I GCDKFCT+C+VPYTRG Sbjct: 165 ALMSKEMVVEVWSKEGDIVENLPKV-----REDGLKAWVNIMYGCDKFCTYCIVPYTRGK 219 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR V+ E R L G E+TLLGQNVNA+ GK + F DL+ + +I G+ Sbjct: 220 ERSRRPEDVLAEIRDLARKGYREVTLLGQNVNAY-GKDFEDRDYRFGDLMEDVRKI-GIP 277 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLP QSG++ ILK M R++T + +++ + Sbjct: 278 RVRFTTSHPRDFDDHLIEVLARRGNLVEHIHLPAQSGNNAILKIMARKYTRERFLELVAK 337 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ PD+ +++D IVG+PGET++ F T+ L+ ++ + AF+F YSPR GTP + M + Sbjct: 338 IKAAIPDVVLTTDIIVGYPGETEEQFEDTLSLMREVEFDSAFTFIYSPREGTPAAKMKDD 397 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVL 440 V NVK ERL L E N A Q++EVL+E + K+ L GR+ + V Sbjct: 398 VPMNVKKERLYRLNHLQDEISRKKNLALKDQVVEVLVEGESKKDPNVLSGRTRTNKLVNF 457 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 H IG+ +VRIT+ + TL GE V Sbjct: 458 QGPKHLIGEFAQVRITEPRTWTLKGEWV 485 >gi|258515352|ref|YP_003191574.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum acetoxidans DSM 771] gi|257779057|gb|ACV62951.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum acetoxidans DSM 771] Length = 451 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 181/446 (40%), Positives = 270/446 (60%), Gaps = 18/446 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + ++GCQMN +DS + + ++GY + + +DAD+I+LNTC IRE A KVY L Sbjct: 11 KKYLIITFGCQMNEHDSEILAGILHNKGYIKTDKQEDADIILLNTCCIRETAESKVYGML 70 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILR-RSPIVNVVVGPQTYYRLPELLER 142 GR+R LK K DL++ V GC+ Q AE + LR R P V+++ G + L +LL++ Sbjct: 71 GRLRRLK----KSNPDLVLGVCGCMTQQAEAAKKLRQRFPYVDLIFGTHNSHLLSDLLDK 126 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRG 200 V++ V D + ++ V G +R G+ A + I GC+ FCT+C+VPY RG Sbjct: 127 ------VMEKREPVLDVWSDVAPVTGELPVQRVSGIKALVNITYGCNNFCTYCIVPYVRG 180 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SRS ++ E L+ G E+TLLGQNVN++ GK L F+DLL L E G+ Sbjct: 181 RERSRSPEDILQEVGGLVIAGYKEVTLLGQNVNSY-GKDLKN-PLDFADLLLML-EDTGI 237 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RY TSHPRD SD LI+ + + HLPVQ+GS+RIL+ MNR +T Y +++D Sbjct: 238 ERIRYMTSHPRDFSDKLIQVIAKSKKVCEHFHLPVQAGSNRILRLMNRGYTRENYLELVD 297 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +IR P I++D IVGFPGET+ DF AT+DL++K+ A++F Y+ R GTP +NM E Sbjct: 298 KIRCAVPQAGITTDIIVGFPGETEADFAATLDLLEKVRCYSAYTFVYNKRSGTPAANMQE 357 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 Q++ VK R+ L K + ++ N+A VG+I++VL+E GK L GR+ + VV Sbjct: 358 QIEATVKKARIQELIKMQNKISLADNEAEVGRILDVLVEGPGKTGNNLTGRTRTNKLVVF 417 Query: 441 NSK-NHNIGDIIKVRITDVKISTLYG 465 ++ N G + V+I ++S L G Sbjct: 418 AAQANFLTGQTVPVKIIKGRLSHLDG 443 >gi|323718661|gb|EGB27824.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Mycobacterium tuberculosis CDC1551A] Length = 518 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 172/462 (37%), Positives = 269/462 (58%), Gaps = 27/462 (5%) Query: 23 VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P R + V++YGCQMNV+DS R+ + + GY R +AD++V NTC +RE A ++Y Sbjct: 55 APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 114 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L + R + D+ + V GC+AQ + + +LRR+P V+VV G LP LLE Sbjct: 115 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 170 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 RAR K V+ +++ L +R+ A+++I GC+ CTFC+VP RG Sbjct: 171 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 225 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256 E+ RS + ++ E R L+++GV E+TLLGQNVNA+ L + F++LL + + Sbjct: 226 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 285 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I GL R+R+T+ HP + +D +I+A + P LH+P+QSGSDRIL++M R + A Y Sbjct: 286 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 345 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 II+R+R+ P AI++D IVGFPGET++DF AT+D+V + +A AF+F+YS R GTP + Sbjct: 346 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 405 Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429 + Q+ + V + ERL+ LQ+++ + N A VGQ +EVL+ K ++ Sbjct: 406 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 462 Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 GR+ + V + + GD+I ++T+ L + V Sbjct: 463 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 504 >gi|253798186|ref|YP_003031187.1| hypothetical protein TBMG_01242 [Mycobacterium tuberculosis KZN 1435] gi|289553483|ref|ZP_06442693.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis KZN 605] gi|289746535|ref|ZP_06505913.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|298526202|ref|ZP_07013611.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308378082|ref|ZP_07481451.2| conserved alanine and arginine rich protein [Mycobacterium tuberculosis SUMu009] gi|253319689|gb|ACT24292.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis KZN 1435] gi|289438115|gb|EFD20608.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis KZN 605] gi|289687063|gb|EFD54551.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|298495996|gb|EFI31290.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308353677|gb|EFP42528.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis SUMu009] gi|328457959|gb|AEB03382.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis KZN 4207] Length = 545 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 172/462 (37%), Positives = 269/462 (58%), Gaps = 27/462 (5%) Query: 23 VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P R + V++YGCQMNV+DS R+ + + GY R +AD++V NTC +RE A ++Y Sbjct: 55 APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 114 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L + R + D+ + V GC+AQ + + +LRR+P V+VV G LP LLE Sbjct: 115 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 170 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 RAR K V+ +++ L +R+ A+++I GC+ CTFC+VP RG Sbjct: 171 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 225 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256 E+ RS + ++ E R L+++GV E+TLLGQNVNA+ L + F++LL + + Sbjct: 226 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 285 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I GL R+R+T+ HP + +D +I+A + P LH+P+QSGSDRIL++M R + A Y Sbjct: 286 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 345 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 II+R+R+ P AI++D IVGFPGET++DF AT+D+V + +A AF+F+YS R GTP + Sbjct: 346 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 405 Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429 + Q+ + V + ERL+ LQ+++ + N A VGQ +EVL+ K ++ Sbjct: 406 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 462 Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 GR+ + V + + GD+I ++T+ L + V Sbjct: 463 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 504 >gi|15609870|ref|NP_217249.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium tuberculosis H37Rv] gi|31793905|ref|NP_856398.1| hypothetical protein Mb2752c [Mycobacterium bovis AF2122/97] gi|121638608|ref|YP_978832.1| hypothetical protein BCG_2746c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662574|ref|YP_001284097.1| hypothetical protein MRA_2759 [Mycobacterium tuberculosis H37Ra] gi|148823921|ref|YP_001288675.1| hypothetical protein TBFG_12746 [Mycobacterium tuberculosis F11] gi|167967441|ref|ZP_02549718.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis H37Ra] gi|215404696|ref|ZP_03416877.1| hypothetical protein Mtub0_13618 [Mycobacterium tuberculosis 02_1987] gi|215412537|ref|ZP_03421271.1| hypothetical protein Mtub9_14345 [Mycobacterium tuberculosis 94_M4241A] gi|215431668|ref|ZP_03429587.1| hypothetical protein MtubE_13568 [Mycobacterium tuberculosis EAS054] gi|218754467|ref|ZP_03533263.1| hypothetical protein MtubG1_14004 [Mycobacterium tuberculosis GM 1503] gi|219558738|ref|ZP_03537814.1| hypothetical protein MtubT1_16097 [Mycobacterium tuberculosis T17] gi|224991100|ref|YP_002645789.1| hypothetical alanine, arginine-rich protein [Mycobacterium bovis BCG str. Tokyo 172] gi|254232832|ref|ZP_04926159.1| conserved hypothetical alanine, arginine-rich protein [Mycobacterium tuberculosis C] gi|254365387|ref|ZP_04981432.1| conserved hypothetical alanine, arginine-rich protein [Mycobacterium tuberculosis str. Haarlem] gi|260187748|ref|ZP_05765222.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium tuberculosis CPHL_A] gi|260201856|ref|ZP_05769347.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium tuberculosis T46] gi|289444275|ref|ZP_06434019.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium tuberculosis T46] gi|289448388|ref|ZP_06438132.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis CPHL_A] gi|289570909|ref|ZP_06451136.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis T17] gi|289754836|ref|ZP_06514214.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289762904|ref|ZP_06522282.1| conserved hypothetical alanine, arginine-rich protein [Mycobacterium tuberculosis GM 1503] gi|294994178|ref|ZP_06799869.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium tuberculosis 210] gi|297635339|ref|ZP_06953119.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium tuberculosis KZN 4207] gi|297732335|ref|ZP_06961453.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium tuberculosis KZN R506] gi|306777010|ref|ZP_07415347.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis SUMu001] gi|306780913|ref|ZP_07419250.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium tuberculosis SUMu002] gi|306798636|ref|ZP_07436938.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium tuberculosis SUMu006] gi|306973125|ref|ZP_07485786.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis SUMu010] gi|313659668|ref|ZP_07816548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium tuberculosis KZN V2475] gi|54040612|sp|P67086|MIAB_MYCBO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|54042947|sp|P67085|MIAB_MYCTU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890564|sp|A1KM71|MIAB_MYCBP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890569|sp|A5U685|MIAB_MYCTA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|2292967|emb|CAB10909.1| CONSERVED HYPOTHETICAL ALANINE, ARGININE-RICH PROTEIN [Mycobacterium tuberculosis H37Rv] gi|31619499|emb|CAD94937.1| CONSERVED HYPOTHETICAL ALANINE, ARGININE-RICH PROTEIN [Mycobacterium bovis AF2122/97] gi|121494256|emb|CAL72734.1| Conserved hypothetical alanine, arginine-rich protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601891|gb|EAY60901.1| conserved hypothetical alanine, arginine-rich protein [Mycobacterium tuberculosis C] gi|134150900|gb|EBA42945.1| conserved hypothetical alanine, arginine-rich protein [Mycobacterium tuberculosis str. Haarlem] gi|148506726|gb|ABQ74535.1| conserved hypothetical alanine and arginine rich protein [Mycobacterium tuberculosis H37Ra] gi|148722448|gb|ABR07073.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis F11] gi|224774215|dbj|BAH27021.1| hypothetical alanine, arginine-rich protein [Mycobacterium bovis BCG str. Tokyo 172] gi|289417194|gb|EFD14434.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium tuberculosis T46] gi|289421346|gb|EFD18547.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis CPHL_A] gi|289544663|gb|EFD48311.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis T17] gi|289695423|gb|EFD62852.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289710410|gb|EFD74426.1| conserved hypothetical alanine, arginine-rich protein [Mycobacterium tuberculosis GM 1503] gi|308214667|gb|EFO74066.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis SUMu001] gi|308326311|gb|EFP15162.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium tuberculosis SUMu002] gi|308341151|gb|EFP30002.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium tuberculosis SUMu006] gi|308357524|gb|EFP46375.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis SUMu010] gi|326904348|gb|EGE51281.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis W-148] Length = 512 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 172/462 (37%), Positives = 269/462 (58%), Gaps = 27/462 (5%) Query: 23 VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P R + V++YGCQMNV+DS R+ + + GY R +AD++V NTC +RE A ++Y Sbjct: 22 APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 81 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L + R + D+ + V GC+AQ + + +LRR+P V+VV G LP LLE Sbjct: 82 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 137 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 RAR K V+ +++ L +R+ A+++I GC+ CTFC+VP RG Sbjct: 138 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 192 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256 E+ RS + ++ E R L+++GV E+TLLGQNVNA+ L + F++LL + + Sbjct: 193 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 252 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I GL R+R+T+ HP + +D +I+A + P LH+P+QSGSDRIL++M R + A Y Sbjct: 253 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 312 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 II+R+R+ P AI++D IVGFPGET++DF AT+D+V + +A AF+F+YS R GTP + Sbjct: 313 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 372 Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429 + Q+ + V + ERL+ LQ+++ + N A VGQ +EVL+ K ++ Sbjct: 373 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 429 Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 GR+ + V + + GD+I ++T+ L + V Sbjct: 430 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 471 >gi|317153127|ref|YP_004121175.1| RNA modification enzyme, MiaB family [Desulfovibrio aespoeensis Aspo-2] gi|316943378|gb|ADU62429.1| RNA modification enzyme, MiaB family [Desulfovibrio aespoeensis Aspo-2] Length = 452 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 185/462 (40%), Positives = 266/462 (57%), Gaps = 34/462 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F + ++GCQMNV+DS + S+G++ D+A + + NTC +R+K +KVYS LG Sbjct: 2 KFHITTFGCQMNVHDSQWLARALESRGWQEAGE-DEALVYIFNTCSVRDKPEQKVYSELG 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI + + + VV GCVAQ G R P V +V G P LER Sbjct: 61 RI----AAHLGRDDRVFAVVGGCVAQQIGRGFFERFPFVRLVFGSDGIVGAPNALERLVA 116 Query: 146 G--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G +RV D+ + ER + + NR R AF+TI +GCD FC +C+VPYTRG + Sbjct: 117 GDDERVALLDF-MPVYEERETPGEQTANRTR--QAFVTIMQGCDNFCAYCIVPYTRGRQK 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLV 261 SR VVDE R L+ +GV EITLLGQNVN++ GLD G +F+ LL ++ + GL Sbjct: 174 SRHPDAVVDECRALVASGVREITLLGQNVNSF---GLDKGGAGVSFAQLLRRVAGLDGLD 230 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR+TTSHP+D++ +I A G+ D+L P LHLP+QSGSD +LK+M RR+T Y + ++ Sbjct: 231 RLRFTTSHPKDIAPEVIAAFGEFDMLCPSLHLPLQSGSDAMLKAMRRRYTLDHYMRTVEA 290 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RP IA+++D IVGFPGET+ DF+AT+D+++ +GY +FSFKYS R G NM + Sbjct: 291 LRRARPGIALTTDLIVGFPGETEADFQATLDVMEAVGYDSSFSFKYSDRPGVAAVNMEPK 350 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACV----GQIIEVLIE---------KHGKEKGKL 428 VD V A+RL+ +L+ Q S C+ G +V +E Sbjct: 351 VDPQVAADRLM----RLQTLQNSITRKCLKMLEGVETDVFVEGLSRIQDPGATSSTATSW 406 Query: 429 VGRSPW--LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 GR P + +V + + +G ++ VRIT K +L GE + Sbjct: 407 KGRDPAGRIVNVPTDVREGLVGLLMPVRITQAKKHSLMGERI 448 >gi|255655942|ref|ZP_05401351.1| putative radical SAM protein [Clostridium difficile QCD-23m63] gi|296450635|ref|ZP_06892388.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium difficile NAP08] gi|296879247|ref|ZP_06903242.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium difficile NAP07] gi|296260479|gb|EFH07321.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium difficile NAP08] gi|296429790|gb|EFH15642.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium difficile NAP07] Length = 478 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 168/446 (37%), Positives = 275/446 (61%), Gaps = 16/446 (3%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 F +++GCQMN +DS ++ M GY+ ++++DLI+ NTC +RE A KVY LG++ Sbjct: 42 FTQTFGCQMNEHDSEKLCSMLEEMGYQMSMMVEESDLIIYNTCAVRENAELKVYGNLGQL 101 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARF 145 ++LK + ++ + V GC+ Q EE+ ++ V+++ G Y+ P+LL + Sbjct: 102 KHLKG----KNPNMKIAVCGCMMQQPHVVEELRKKYKHVDLIFGTHNLYKFPQLLTESMN 157 Query: 146 GKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +++ + V+ + +++G NRK + AF+ I GC+ FCT+C+VPYTRG E S Sbjct: 158 SDKMLVDVWDVDGE-----VIEGLRSNRKFELKAFVNIMYGCNNFCTYCIVPYTRGRERS 212 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+ +++E ++L+ NG EITLLGQNV+++ GK L+ +FS+LL +++I+G+ R+R Sbjct: 213 RTPEDIINEIKELVANGTKEITLLGQNVDSY-GKTLEN-PVSFSELLRKVNDIEGIERIR 270 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D+SD +I A D D + +LHLP+Q GS +LK MNR +T Y +II++ + Sbjct: 271 FMTSHPKDISDEVIYAIRDCDKVCEFLHLPIQCGSSSLLKKMNRHYTKEYYLEIIEKAKK 330 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+IA S+D ++GFPGET++D T+D+V+K+ Y AF+F YS R GTP + M Q+ E Sbjct: 331 EVPEIAFSTDLMIGFPGETEEDLLDTLDVVEKVRYDSAFTFIYSKRQGTPAAKMENQIPE 390 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443 ++K ER + + + ND +I+EVL+E K + KL GR+ + V Sbjct: 391 DIKHERFNRVLEAVNRISAEINDGYKNRIVEVLVEGRSKNNENKLSGRTRQNKLVNFEGG 450 Query: 444 NHN-IGDIIKVRITDVKISTLYGELV 468 N + IG ++ V IT+ + +L G LV Sbjct: 451 NDDLIGKLVMVEITEPRTFSLNGILV 476 >gi|308371116|ref|ZP_07423861.2| conserved alanine and arginine rich protein [Mycobacterium tuberculosis SUMu003] gi|308329792|gb|EFP18643.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis SUMu003] Length = 500 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 171/456 (37%), Positives = 267/456 (58%), Gaps = 27/456 (5%) Query: 23 VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P R + V++YGCQMNV+DS R+ + + GY R +AD++V NTC +RE A ++Y Sbjct: 55 APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 114 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L + R + D+ + V GC+AQ + + +LRR+P V+VV G LP LLE Sbjct: 115 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 170 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 RAR K V+ +++ L +R+ A+++I GC+ CTFC+VP RG Sbjct: 171 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 225 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256 E+ RS + ++ E R L+++GV E+TLLGQNVNA+ L + F++LL + + Sbjct: 226 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 285 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I GL R+R+T+ HP + +D +I+A + P LH+P+QSGSDRIL++M R + A Y Sbjct: 286 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 345 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 II+R+R+ P AI++D IVGFPGET++DF AT+D+V + +A AF+F+YS R GTP + Sbjct: 346 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 405 Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429 + Q+ + V + ERL+ LQ+++ + N A VGQ +EVL+ K ++ Sbjct: 406 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 462 Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTL 463 GR+ + V + + GD+I ++T+ L Sbjct: 463 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHL 498 >gi|307154937|ref|YP_003890321.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7822] gi|306985165|gb|ADN17046.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7822] Length = 446 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 178/454 (39%), Positives = 279/454 (61%), Gaps = 23/454 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R+ + ++GCQMN DS RM + GY+ ++ADL++ NTC IR+ A +KVYS+L Sbjct: 6 RRYHITTFGCQMNKADSERMAGILEDLGYQWSEDPNEADLVLYNTCTIRDNAEQKVYSYL 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + R E DL ++VAGCVAQ EGE++LRR P +++V+GPQ L +LL++ Sbjct: 66 GR----QAKRKHEKPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQYANLLQDLLKQVE 121 Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G ++V T+ + VED + R+ V+A++ + GC++ C++CVVP RG+E Sbjct: 122 DGHQIVATEPIHIVEDITKP--------RRESRVSAWVNVIYGCNERCSYCVVPNVRGVE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------FSDLLYSLSE 256 SR+ + E +L G EITLLGQN++A+ G+ L G T +DLLY +++ Sbjct: 174 QSRTPQAIRAEMEELGRQGYKEITLLGQNIDAY-GRDLPGVTATGRHLHTLTDLLYYVND 232 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + G+ R+R+ TSHPR ++ LI A +L + + H+P QSG ++ILK+M R +T +YR Sbjct: 233 VPGIERIRFATSHPRYFTERLIVACKELPKVCEHFHIPFQSGDNQILKAMKRGYTQEKYR 292 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 QII++IRS+ PD +IS+D IVGFPGET++ F T+ LVD IG+ Q + YSPR GTP + Sbjct: 293 QIIEKIRSLMPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAA 352 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWL 435 Q+ E VK++RL L + + + +G+ EVL+E+ + K +++GR+ Sbjct: 353 LWDNQLSEEVKSDRLQRLNHLVGIKAAERSQRYLGRTEEVLVEEVNPKNPTQVMGRTRGN 412 Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + N G I+ V+IT+V+ +L G++V Sbjct: 413 RLTFFEGDINQLKGQIVSVKITEVRPFSLSGKIV 446 >gi|297588418|ref|ZP_06947061.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna ATCC 53516] gi|297573791|gb|EFH92512.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna ATCC 53516] Length = 461 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 175/446 (39%), Positives = 272/446 (60%), Gaps = 16/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + + ++GCQMN +DS +++ + + G+E+ + DAD I+ NTC +RE A KVY LG Sbjct: 27 YSIITHGCQMNEHDSEKIKTLLENMGFEQSDEKLDADFIIFNTCLVRENAEMKVYGQLGA 86 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILR-RSPIVNVVVGPQTYYRLPELLERA- 143 ++NLK +E D+L+ V GC+ Q +I+R + P V++V G LP L++R Sbjct: 87 LKNLK----RENPDMLIAVCGCMMQTGPARDIIREKYPQVDIVFGVNNINSLPYLIDRHL 142 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK VVD + +D E ++I R ++ I GC+ FCT+C+VPY RG E Sbjct: 143 SSGKLVVDIERK-DDIDEDIAI-----KRDNEYVGYVNIMTGCNNFCTYCIVPYARGREQ 196 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SRS+ ++ E ++++D G +ITLLGQNVN++ GK L+ + TF++LL +++++GL RL Sbjct: 197 SRSVESILSEVKRMVDQGYKDITLLGQNVNSY-GKTLE-KPVTFTELLTKVNDVEGLERL 254 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD LI+A G LD + +HLP Q+GS+ +L+ M+RR+T Y + +++++ Sbjct: 255 RFLTSHPKDISDELIEAMGKLDKVCENIHLPFQAGSNSVLERMHRRYTKESYLEKVEKLK 314 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 I S+D IVGFPGET++DF+ T+D+V K+GY QAF+FKY+ R GT +QVD Sbjct: 315 KSVKGITFSTDIIVGFPGETEEDFQDTLDVVRKVGYEQAFTFKYNRRPGTKADLFEDQVD 374 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 E+VK +RL L N + +G I EVLIE K + + GR+ + V + Sbjct: 375 EDVKQDRLERLLDVAYPIFYEKNKSYLGTIQEVLIEGESKNNPEVMTGRTRTFKLVNVKC 434 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ +I D L GE+V Sbjct: 435 DKSYIGKLVNTKIVDFNSFALTGEMV 460 >gi|308372381|ref|ZP_07428457.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium tuberculosis SUMu004] gi|308333412|gb|EFP22263.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium tuberculosis SUMu004] Length = 498 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 171/456 (37%), Positives = 267/456 (58%), Gaps = 27/456 (5%) Query: 23 VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P R + V++YGCQMNV+DS R+ + + GY R +AD++V NTC +RE A ++Y Sbjct: 55 APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 114 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L + R + D+ + V GC+AQ + + +LRR+P V+VV G LP LLE Sbjct: 115 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 170 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 RAR K V+ +++ L +R+ A+++I GC+ CTFC+VP RG Sbjct: 171 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 225 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256 E+ RS + ++ E R L+++GV E+TLLGQNVNA+ L + F++LL + + Sbjct: 226 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 285 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I GL R+R+T+ HP + +D +I+A + P LH+P+QSGSDRIL++M R + A Y Sbjct: 286 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 345 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 II+R+R+ P AI++D IVGFPGET++DF AT+D+V + +A AF+F+YS R GTP + Sbjct: 346 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 405 Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429 + Q+ + V + ERL+ LQ+++ + N A VGQ +EVL+ K ++ Sbjct: 406 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 462 Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTL 463 GR+ + V + + GD+I ++T+ L Sbjct: 463 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHL 498 >gi|308380459|ref|ZP_07490004.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium tuberculosis SUMu011] gi|308361421|gb|EFP50272.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium tuberculosis SUMu011] Length = 500 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 172/462 (37%), Positives = 269/462 (58%), Gaps = 27/462 (5%) Query: 23 VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P R + V++YGCQMNV+DS R+ + + GY R +AD++V NTC +RE A ++Y Sbjct: 22 APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 81 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L + R + D+ + V GC+AQ + + +LRR+P V+VV G LP LLE Sbjct: 82 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 137 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 RAR K V+ +++ L +R+ A+++I GC+ CTFC+VP RG Sbjct: 138 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 192 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256 E+ RS + ++ E R L+++GV E+TLLGQNVNA+ L + F++LL + + Sbjct: 193 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 252 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I GL R+R+T+ HP + +D +I+A + P LH+P+QSGSDRIL++M R + A Y Sbjct: 253 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 312 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 II+R+R+ P AI++D IVGFPGET++DF AT+D+V + +A AF+F+YS R GTP + Sbjct: 313 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 372 Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429 + Q+ + V + ERL+ LQ+++ + N A VGQ +EVL+ K ++ Sbjct: 373 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 429 Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 GR+ + V + + GD+I ++T+ L + V Sbjct: 430 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 471 >gi|167754516|ref|ZP_02426643.1| hypothetical protein CLORAM_00017 [Clostridium ramosum DSM 1402] gi|167705348|gb|EDS19927.1| hypothetical protein CLORAM_00017 [Clostridium ramosum DSM 1402] Length = 481 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 171/447 (38%), Positives = 263/447 (58%), Gaps = 14/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++++++YGCQ N DS + + S Y+ + +AD+IVLNTC IRE A EKV+ + Sbjct: 44 KKYYIQTYGCQANERDSETLSGILESMSYQPTTEIKEADVIVLNTCAIRENAEEKVFGKV 103 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++NLK K +L+ + GC+AQ E IL + P V+++ G +RLPELL+ Sbjct: 104 GYVKNLK----KTNPNLIFAMCGCMAQEEVVVNRILEKHPHVDLIFGTHNIHRLPELLKD 159 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A + K ++ +S E I + R A++ I GC+KFCT+C+VPYTRG E Sbjct: 160 ALYSKEMIVEVWSKEGDV----IENAPVRRDNKYKAWVNIMYGCNKFCTYCIVPYTRGKE 215 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR ++ E +L+ G EITLLGQNVN++ GK L GE FS+LL +++ + R Sbjct: 216 RSRLAKDIIKEVEELVAEGYQEITLLGQNVNSY-GKDL-GEDYNFSNLLEDVAKT-NIPR 272 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP D S+ +IK D +MP +HLPVQSG++ +LK M RR++ +Y ++ +I Sbjct: 273 IRFTTSHPWDFSEDMIKIIAKYDNIMPAIHLPVQSGNNEVLKLMGRRYSREQYLELFHKI 332 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + PD +++D IVGFP ET + + T+ L + Y A++F YSPR GTP + M++ V Sbjct: 333 KEYIPDCTVTTDIIVGFPNETHEQYLDTLSLYQECEYDLAYTFVYSPRAGTPAAKMVDNV 392 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN 441 + K +RL L + + E+ N + +I+EVL+E K+ L G + + V Sbjct: 393 ASDEKDQRLYKLNEIVNEKAYKQNQRFLNKIVEVLVEGTSKKDDSMLTGYTRHQKLVNFK 452 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +IG IIKV+IT+ K L GE + Sbjct: 453 GDPKDIGKIIKVKITEAKTWALKGESI 479 >gi|298206730|ref|YP_003714909.1| putative SAM/TRAM family methylase protein [Croceibacter atlanticus HTCC2559] gi|83849361|gb|EAP87229.1| putative SAM/TRAM family methylase protein [Croceibacter atlanticus HTCC2559] Length = 482 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 178/462 (38%), Positives = 268/462 (58%), Gaps = 27/462 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGC MN DS + + +G+ +++DADL+++NTC IR+KA + V L Sbjct: 24 RKLFIESYGCAMNFSDSEIVASIMAKEGFNTTPNLEDADLVLVNTCSIRDKAEQTVRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K ++ V V GC+A+ + L IV++VVGP Y LP L++ Sbjct: 84 EKYNAVKRDH---NPNMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLIKEVE 140 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V+ S ++ + +S V N GV+AF++I GCD CTFCVVP+TRG E S Sbjct: 141 EGRDAVNVILSKDETYGDVSPVRLQTN---GVSAFVSITRGCDNMCTFCVVPFTRGRERS 197 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251 R ++DE R L +NG EITLLGQNV++ W G G+ D K T F LL Sbjct: 198 RDPQSILDEVRNLSENGYKEITLLGQNVDSYLWYGGGMKKDFSKATPMQQATATGFPQLL 257 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++E +R+R++TS+P+DM++ +IK + ++HLPVQSGSDRILK MNR HT Sbjct: 258 KMVAETFPNMRIRFSTSNPQDMTEDVIKTMAAYSNICKHIHLPVQSGSDRILKEMNRLHT 317 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY +ID IR+ PD +IS D I+GFP ET+ D + T+ L++K+ Y + +KYS R Sbjct: 318 REEYFSLIDTIRAYMPDCSISQDMIIGFPTETEQDHKDTLSLMEKVQYNFGYMYKYSERP 377 Query: 372 GT-PGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 GT G M + V E VK RL + LQ++L + Q N +G+ +EVL+E+ K+ K Sbjct: 378 GTMAGRKMEDDVPEEVKKRRLSEVVALQRQLSQLQTEKN---IGKTVEVLVERESKKSDK 434 Query: 428 -LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 GR+ V +++ +GD++ V+I D +TL G + Sbjct: 435 EWSGRTSQNAVAVFPKEHYKVGDLVNVKIHDCTSATLIGNAI 476 >gi|289424090|ref|ZP_06425876.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptostreptococcus anaerobius 653-L] gi|289155515|gb|EFD04194.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptostreptococcus anaerobius 653-L] Length = 482 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 171/450 (38%), Positives = 270/450 (60%), Gaps = 16/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F ++++GCQMN +DS + M S GY R S D AD+++ NTC +RE A KVY L Sbjct: 39 KSFIIQTFGCQMNEHDSEMLISMLESIGYSRALSEDTADIVIYNTCAVRENAELKVYGNL 98 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++++K R D+ +VV GC+ Q E EEI + V++V G Y+ PELL Sbjct: 99 GHLKSIKRKR----PDMKIVVCGCMMQQEHIVEEIKAKHQHVDLVFGTHNLYKFPELLAS 154 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +++ + ++ + +V+G NRK + AF+ I GC+ FCT+C+VPYTRG Sbjct: 155 TFESDKILVDVWDIDGE-----VVEGLKSNRKFDIKAFVNIMYGCNNFCTYCIVPYTRGR 209 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGL 260 E SR ++ E L+ GV E+TLLGQNVN++ GK L+ E + +F+DLL ++EI+GL Sbjct: 210 ERSRKPKDIISEIEDLVKGGVREVTLLGQNVNSY-GKTLEEEDRISFADLLRRVNEIEGL 268 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ +SHP+D+SD +I A D + +LHLP Q GS +LK MNR ++ +Y II Sbjct: 269 ERIRFMSSHPKDISDDVIYAMRDCKKVCEFLHLPFQVGSTSLLKKMNRHYSKEDYLNIIK 328 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + + PD+A S+D ++GFPGETD+D + T+D+ +++ + AF+F YS R GTP + M + Sbjct: 329 KAKEEIPDLAFSTDIMIGFPGETDEDVQDTIDICEEVRFDTAFTFIYSKRQGTPAAKMED 388 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439 Q+ E +K +R + + N G+I+EVL+E K+ + G+S ++V Sbjct: 389 QIPEEIKHKRFDKVLSVINRISGEKNHLYDGKIVEVLVEGASKKDSSIMTGKSRQNKTVN 448 Query: 440 LNSKNHN-IGDIIKVRITDVKISTLYGELV 468 + + +G ++ V+ITD K +L G+L Sbjct: 449 FTGGDESLVGRLVNVKITDPKSFSLNGQLA 478 >gi|300855303|ref|YP_003780287.1| putative MiaB protein [Clostridium ljungdahlii DSM 13528] gi|300435418|gb|ADK15185.1| putative MiaB protein [Clostridium ljungdahlii DSM 13528] Length = 447 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 174/448 (38%), Positives = 263/448 (58%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + FF++++GCQMN DS ++ M GY+R ADLI+ NTC +RE A KVY L Sbjct: 10 KNFFIETWGCQMNEEDSEKLSGMLKRLGYKRTEDRSSADLIIFNTCCVRENAELKVYGNL 69 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK IK +L++ + GC+ Q + + I++R P V+++ G Y+ PE L R Sbjct: 70 GMLKKLK---IK-NPNLIIAICGCMMQQKDMAKNIIKRFPFVDIIFGTHNAYKFPEYLNR 125 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + V ++DK IV+G +R+ V AF+TI GC+ FCT+C+VPY RG Sbjct: 126 VQQENTSV---IEIQDK--ESGIVEGLPIDRESNVKAFVTITYGCNNFCTYCIVPYVRGR 180 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR + E ++LI G EITLLGQNVN++ GK L+ K +FSDLL ++ I G+ Sbjct: 181 ERSRKPEDIEKEIKELISKGYKEITLLGQNVNSY-GKTLE-PKVSFSDLLRRINSIDGVE 238 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TS P+D+++ ++ A + + +HLPVQSGS +LK MNR ++ Y ++ Sbjct: 239 RIRFMTSQPKDLTEDVVDAVAECSKVCEQIHLPVQSGSTSLLKKMNRSYSKEGYLNLVKM 298 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR PD AI++D IVGFPGET++DF T++L ++ Y AF+F YS R GTP + +Q Sbjct: 299 IREKVPDAAITTDIIVGFPGETEEDFEETLNLAREVQYDSAFTFIYSKRKGTPAYDFEDQ 358 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 + E++K ER L + + E N G+ E+L+E K + KL GR+ + V Sbjct: 359 IPEDIKHERFNRLVEVINESSARKNKDYEGRTEEILVEGTSKNDNTKLTGRTRSGKLVNF 418 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +IG ++KV+IT +L GE + Sbjct: 419 KGNKKDIGKLVKVQITKATSFSLLGEEI 446 >gi|95930428|ref|ZP_01313164.1| tRNA-i(6)A37 modification enzyme MiaB [Desulfuromonas acetoxidans DSM 684] gi|95133468|gb|EAT15131.1| tRNA-i(6)A37 modification enzyme MiaB [Desulfuromonas acetoxidans DSM 684] Length = 444 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 170/440 (38%), Positives = 267/440 (60%), Gaps = 25/440 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F+++++GCQMNV DS + ++ Y V + ADLI+LNTC +R+KA KVY L Sbjct: 5 FYLETFGCQMNVVDSEWIVNLLGQIDYHPVETPQQADLILLNTCSVRDKAERKVYGHLSH 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERA 143 + LK+ R DL++ V GCVAQ EG+++L++ P +++V G ++LPEL+ E+ Sbjct: 65 FKPLKDQR----PDLILAVGGCVAQQEGQQLLKKVPYLDIVFGTHNVHKLPELIFAVEQG 120 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R G++ T Y + ++ + + F+T+ +GCD FC++CVVPY RG E+ Sbjct: 121 R-GRQCETTHYEGAKRLDQFP----QRADENAICRFVTVMQGCDNFCSYCVVPYVRGREV 175 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR+ ++DE R L+D GV E+TLLGQNVN++ KG +F +LL + +I GL RL Sbjct: 176 SRASGDILDEVRSLVDQGVREVTLLGQNVNSYGQKG--SGDMSFPELLQRVHDIDGLQRL 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+SHP+D+SD LI LD L ++HL +QSGS+R+L+ MNR ++ +Y + + R++ Sbjct: 234 RFTSSHPKDLSDDLIACFTSLDKLCKHMHLALQSGSNRVLELMNRGYSREQYLERVTRLK 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P+I +++D IVGFPGE DF T+D+++++ +A AFSF YS R T M + V Sbjct: 294 QACPEIRMTTDLIVGFPGEQQADFEQTLDMLEQVRFADAFSFLYSRRPQTKALEMEDPVP 353 Query: 384 ENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQS 437 + K ER+L LQ+ + + + C G + VL+E +HG +G++ GR+ W + Sbjct: 354 ADEKQRWFERMLKLQETISAE--IWQQDC-GTVQPVLVEGVSRHG--QGQVFGRNQWNRI 408 Query: 438 VVLNSKNHNIGDIIKVRITD 457 V + IG + VRI D Sbjct: 409 VNFDGPESLIGQQVAVRIED 428 >gi|256390815|ref|YP_003112379.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Catenulispora acidiphila DSM 44928] gi|256357041|gb|ACU70538.1| RNA modification enzyme, MiaB family [Catenulispora acidiphila DSM 44928] Length = 509 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 171/446 (38%), Positives = 268/446 (60%), Gaps = 31/446 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + V++YGCQMNV+DS R+ + GY R + +AD++VLNTC +RE A ++Y LG Sbjct: 10 YIVRTYGCQMNVHDSERLSGLLEGAGYVRAADGAGEADVVVLNTCAVRENADNRLYGNLG 69 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + ++K R + + V GC+AQ + EI RR+P V+VV G LP LLERAR Sbjct: 70 HLASVKAGRP----GMRIAVGGCLAQKDRGEITRRAPWVDVVFGTHNIGSLPVLLERARV 125 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 D + + E L + +R A++++ GC+ CTFC+VP RG E Sbjct: 126 ------RDEAQVEILESLDVFPSTLPTRRESAYAAWVSVSVGCNNTCTFCIVPALRGKEK 179 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 R +++ E L+ GVCE+TLLGQNVNA+ + G++ F+ LL + +I+GL R+ Sbjct: 180 DRRPGEILSEIEALVAEGVCEVTLLGQNVNAYGSEF--GDREAFAKLLRACGQIEGLERV 237 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HPRD +D +I A + +MP LH+P+QSGSD +L++M R + Y II+R+R Sbjct: 238 RFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQDRYLGIIERVR 297 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PD AI++D IVGFPGET++DF TM +V + ++ AF+F+YS R GTP + M EQV Sbjct: 298 AAMPDAAITTDIIVGFPGETEEDFEQTMHVVRQARFSAAFTFQYSKRPGTPAATMEEQVP 357 Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSP--- 433 + V + ERL+ LQ+++ ++ N VG+ +E+L+ E G++ G ++ GR+P Sbjct: 358 KAVVQARYERLVALQEEISWEE---NKKQVGRTVELLVAEGEGRKDGETRRMSGRAPDNR 414 Query: 434 WLQSVVLNSKNHNI---GDIIKVRIT 456 + V ++ ++ GD++ V +T Sbjct: 415 LVHFAVGDTAAADLPRPGDMVSVEVT 440 >gi|46579397|ref|YP_010205.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio vulgaris str. Hildenborough] gi|81404892|sp|Q72DE5|MIAB_DESVH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|46448811|gb|AAS95464.1| tRNA-i(6)A37 modification enzyme MiaB [Desulfovibrio vulgaris str. Hildenborough] Length = 449 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 179/452 (39%), Positives = 261/452 (57%), Gaps = 26/452 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F ++++GCQMNV DS + +G+ +A L ++NTC +R+K +KVYS LGR Sbjct: 6 FHIETFGCQMNVNDSDWLARALMERGFSPA-PFGEARLTIVNTCSVRDKPEQKVYSLLGR 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--AR 144 IR + + D V V GCVAQ G R P V +V G P+ L+R Sbjct: 65 IRQATSKKP----DAFVAVGGCVAQQIGSGFFSRFPQVRLVFGTDGLAMAPQALDRLVEE 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++ D+S ED ER +++ G + F+ I +GCD FC +C+VPYTRG + S Sbjct: 121 PDLKLSLLDFS-EDYPERDAVLGQG---AVPASVFVNIMQGCDNFCAYCIVPYTRGRQKS 176 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+ ++DE R L+D G EITLLGQNVN++ G+ G+ TF+ LL+ ++ + GL RLR Sbjct: 177 RATGTILDECRALLDRGAREITLLGQNVNSF-GQDSHGDGTTFAQLLHKVAALPGLERLR 235 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + T HP+D++ +++A G L L P LHLP+Q+GSDRILK M RR+ Y +I+D +R+ Sbjct: 236 FVTPHPKDIAPEVVEAFGTLPNLCPRLHLPLQAGSDRILKLMGRRYDMARYLRIVDDLRA 295 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDI +SSD IVGFPGET++DF TMD ++ +GYA ++SF YS R GT + +++ Sbjct: 296 ARPDIVLSSDIIVGFPGETEEDFMETMDALETVGYAASYSFCYSDRPGTRAEMLPDKLSR 355 Query: 385 NVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIE----KHGKEKGKLVGRSPW-- 434 VK ERL ++L+ Q + C VG+ +EVL+E K G E GR P+ Sbjct: 356 EVKLERL----ERLQTLQNRLTERCLQDMVGRKVEVLLEGMSRKPGDEGDSWQGRDPYGN 411 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 L +V L + G + V + K +L E Sbjct: 412 LVNVALPQGSDVRGRFLPVVVAQAKKHSLLAE 443 >gi|256545241|ref|ZP_05472606.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerococcus vaginalis ATCC 51170] gi|256399068|gb|EEU12680.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerococcus vaginalis ATCC 51170] Length = 452 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 172/452 (38%), Positives = 271/452 (59%), Gaps = 19/452 (4%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 V +++ + ++GCQMN +DS R+ + GY + + +DAD I+ NTC +RE A K+Y Sbjct: 13 FVNKKYNITTFGCQMNEHDSERISYILEDLGYTKTDDRNDADFILFNTCLVRENAELKLY 72 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPEL 139 + ++ LK +E + ++ V+GC+ Q E I ++ V+++ G + LP+L Sbjct: 73 GQVSSLKKLK----EENPEKIIAVSGCMMQTSVAREVIEKKHKEVDIIFGTKNINSLPDL 128 Query: 140 L-ERARFGKRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 L + G+RV+D ++ +V+D + YN K A++ I GCD FC++C+VP Sbjct: 129 LFKYLETGERVIDVSEDNVKDDY-------VNYNSKNNFQAYVNIMRGCDNFCSYCIVPQ 181 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 +RG E SR S +++E L+ NG EITLLGQNVN++ K TF +LL ++I Sbjct: 182 SRGREESRRPSHIIEEIENLVKNGYKEITLLGQNVNSYGNKS--DFNVTFPELLEKCAKI 239 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +GL RLR+TTSHP+D+SD LI+ + D + Y HLP+QSGSD++LK MNR++ +Y + Sbjct: 240 EGLQRLRFTTSHPKDLSDDLIRVIKENDNICNYFHLPMQSGSDKVLKDMNRKYNKEQYLE 299 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +++ P IAIS+D IVG+P ET++DF+ T+D+ K+G+ AF+FKYSPR T + Sbjct: 300 KARKLKEEIPGIAISTDIIVGYPTETEEDFQETLDVCRKVGFDTAFTFKYSPRPKTKAAK 359 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQ 436 L+ +D+ + +R L L N VG+++EVL+E K K L GR+ + Sbjct: 360 -LDPIDDKIVQDRFDRLLDTLYPIFNEKNKEYVGKVVEVLLESESKNNKNVLTGRTDTFK 418 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + + + IG I+KV+ITD T+ GELV Sbjct: 419 LVHVKADKNLIGQIVKVKITDNTSFTISGELV 450 >gi|307085426|ref|ZP_07494539.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis SUMu012] gi|308365073|gb|EFP53924.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis SUMu012] Length = 563 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 172/462 (37%), Positives = 269/462 (58%), Gaps = 27/462 (5%) Query: 23 VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P R + V++YGCQMNV+DS R+ + + GY R +AD++V NTC +RE A ++Y Sbjct: 73 APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 132 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L + R + D+ + V GC+AQ + + +LRR+P V+VV G LP LLE Sbjct: 133 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 188 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 RAR K V+ +++ L +R+ A+++I GC+ CTFC+VP RG Sbjct: 189 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 243 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256 E+ RS + ++ E R L+++GV E+TLLGQNVNA+ L + F++LL + + Sbjct: 244 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 303 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I GL R+R+T+ HP + +D +I+A + P LH+P+QSGSDRIL++M R + A Y Sbjct: 304 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 363 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 II+R+R+ P AI++D IVGFPGET++DF AT+D+V + +A AF+F+YS R GTP + Sbjct: 364 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 423 Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429 + Q+ + V + ERL+ LQ+++ + N A VGQ +EVL+ K ++ Sbjct: 424 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 480 Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 GR+ + V + + GD+I ++T+ L + V Sbjct: 481 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 522 >gi|118580144|ref|YP_901394.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pelobacter propionicus DSM 2379] gi|229890588|sp|A1APR6|MIAB_PELPD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|118502854|gb|ABK99336.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelobacter propionicus DSM 2379] Length = 440 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 170/443 (38%), Positives = 261/443 (58%), Gaps = 13/443 (2%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 +++++GCQMNV DS R+ M GY A LI+LNTC +R A EKVY L + Sbjct: 7 YIETFGCQMNVNDSERILTMLADIGYVPTQEPARARLILLNTCSVRAGAEEKVYRRLENL 66 Query: 88 RNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 LK NSR L++ V GCVAQ EGE +L R P +++V G + L +++ A Sbjct: 67 VVLKRHNSR------LIIGVGGCVAQQEGEALLERIPKLDLVFGTHNLHLLNDMVLAAER 120 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G+R +T + D +RL + R +++F+T+ +GC+ +C++C+VPY RG E+SR Sbjct: 121 GERKSETSFI--DNDQRLDLFPPIRGTAR-ISSFVTVMQGCENYCSYCIVPYVRGPEVSR 177 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ E R+L D GV E+ LLGQNVN++ K + +F++L+ ++ + G+ R+R+ Sbjct: 178 RSGDILREVRQLADQGVREVALLGQNVNSYGLK--SSAEPSFAELIRLVAAVDGIRRIRF 235 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TSHP+DMS LI GDL L LHLP QSGSD +L M R +T EY + + +R+V Sbjct: 236 FTSHPKDMSPELIACFGDLPALCSQLHLPAQSGSDNVLARMGRGYTREEYLEKVRALRAV 295 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RPDI + D IVGFPGET+++F+ T+ L++++ Y FSF YSPR GT + + + + Sbjct: 296 RPDIVFTGDMIVGFPGETEEEFQETLSLMEEVRYIDLFSFAYSPRPGTRAAELADDLSRG 355 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 K RL LQ + + ND +G VL+E+ GK G++ G++ ++V + Sbjct: 356 EKQSRLERLQALQKRTTMEINDVLLGTRQTVLVEREGKRPGQISGKADNGRTVNFSGDRS 415 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 IG + +RI V ++L GEL+ Sbjct: 416 LIGTFVDLRIIQVFQNSLLGELL 438 >gi|32475869|ref|NP_868863.1| MiaB protein- tRNA-thiotransferase [Rhodopirellula baltica SH 1] gi|81659862|sp|Q7ULM9|MIAB_RHOBA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|32446412|emb|CAD76240.1| probable MiaB protein-putative tRNA-thiotransferase [Rhodopirellula baltica SH 1] Length = 479 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 176/462 (38%), Positives = 267/462 (57%), Gaps = 30/462 (6%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 ++K+ GCQMNV DS + GY V++ +ADL++ NTC IRE+A EK YS LG++ Sbjct: 9 YIKTVGCQMNVLDSEMVIADLKRHGYTVVDTPGEADLLLYNTCSIREQAEEKTYSALGKL 68 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 + K ++ + V GC+AQ + E I RR+P V++VVGP + +P++L + G+ Sbjct: 69 KETKARHPEK----TIGVMGCMAQKDQETIFRRAPFVDMVVGPGQLHAIPDMLTKVTSGE 124 Query: 148 ---------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 R V E + R A+L IQ GCDKFCT+CVVP T Sbjct: 125 GRQMAVSLGRKDGKQTVVARSHETFDPLRDPTMRPTPFQAYLRIQIGCDKFCTYCVVPNT 184 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG E RS ++V EAR L + G EITLLGQ VN++R +G DGE + LL L +I Sbjct: 185 RGPEQGRSPEEIVSEARVLAEQGALEITLLGQTVNSYRHRGPDGE-TDMAGLLERLHDID 243 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+++ T++P+DM+ L++ DL + PYLH+P QSGSD +LK M R +T +Y ++ Sbjct: 244 GLKRIKFVTNYPKDMTARLLETIRDLPKVSPYLHVPAQSGSDAVLKRMKRGYTIADYMEM 303 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSN 377 +RI +V P+ ++SSDFIVGF GETD+DF+ ++ L+++ + +F F+YS R GT +N Sbjct: 304 FERIETVLPEASVSSDFIVGFCGETDEDFQKSVKLIERCRFKNSFIFQYSVREGTKAAAN 363 Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK------- 427 +++ V VKA R LL +Q ++ ++ N +G +EVL+E K+ K Sbjct: 364 LIDDVPREVKAARNNELLAVQDRISKED---NQKLIGDTVEVLVEGPSKKADKSDLDAPI 420 Query: 428 --LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 + GR+ + VV + G ++ ++I DV TL G + Sbjct: 421 VQMTGRTICDRIVVFDGNRRQAGQLMDIQIDDVSSHTLIGRV 462 >gi|254551787|ref|ZP_05142234.1| hypothetical alanine, arginine-rich protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 512 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 170/457 (37%), Positives = 267/457 (58%), Gaps = 26/457 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS R+ + + GY R +AD++V NTC +RE A ++Y L Sbjct: 27 YQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLYGNLSH 86 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + D+ + V GC+AQ + + +LRR+P V+VV G LP LLERAR Sbjct: 87 L----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLERARHN 142 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 K V+ +++ L +R+ A+++I GC+ CTFC+VP RG E+ R Sbjct: 143 KVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRGREVDR 197 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLV 261 S + ++ E R L+++GV E+TLLGQNVNA+ L + F++LL + +I GL Sbjct: 198 SPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGDIDGLE 257 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP + +D +I+A + P LH+P+QSGSDRIL++M R + A Y II+R Sbjct: 258 RVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYLGIIER 317 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ P AI++D IVGFPGET++DF AT+D+V + +A AF+F+YS R GTP + + Q Sbjct: 318 VRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAAQLDGQ 377 Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLVGRSPW 434 + + V + ERL+ LQ+++ + N A VGQ +EVL+ K ++ GR+ Sbjct: 378 LPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMSGRARD 434 Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 + V + + GD+I ++T+ L + V Sbjct: 435 GRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 471 >gi|108759982|ref|YP_631966.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Myxococcus xanthus DK 1622] gi|122388752|sp|Q1D5V7|MIAB_MYXXD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|108463862|gb|ABF89047.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Myxococcus xanthus DK 1622] Length = 462 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 185/452 (40%), Positives = 271/452 (59%), Gaps = 25/452 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R+F+ ++GCQMNV DSLRM ++ Y D+ADLI+LNTC IREKA +K+ S L Sbjct: 2 KRYFIHTFGCQMNVNDSLRMSEVLSQMSYAPTPVPDNADLIILNTCSIREKAEDKMLSAL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + +K SR L+ V GCVAQ E +++L++ P ++ V GP RLP+++ R Sbjct: 62 GRYKPVKASR-----GALIGVGGCVAQQEKDKLLKKVPYLDFVFGPDNIARLPDIIGRVS 116 Query: 145 FGK-RVVDTDY--SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RVV+T + S E F R D +R + VT F+T+ +GCD C+FC+VP+TRG Sbjct: 117 AERERVVETAFVNSEEYVFPR---ADPETSRGK-VTEFVTVMKGCDNVCSFCIVPHTRGR 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR+ V+ E L GV E+TL+GQNVN++ G +F+ LL +E+ G+ Sbjct: 173 EVSRAFPDVLVEVADLAKVGVREVTLIGQNVNSYAGG------ISFAQLLLRTAEVPGIE 226 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP D+SD LI+A + P+ HLPVQ GSDRILK M R +T +Y + + + Sbjct: 227 RVRFTTSHPHDLSDELIEAFRVQPKITPHFHLPVQCGSDRILKMMRRDYTVVQYLERLAK 286 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RP IA+++D IVGFPGET+++F TM L +++ Y FSF YSPR T G+ + E+ Sbjct: 287 LREARPGIAVTTDIIVGFPGETEEEFEMTMQLTEQVRYDNQFSFVYSPRPKT-GAALREK 345 Query: 382 ----VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQ 436 V VK RL LQK R A VG +EV++E H + + K GR+P + Sbjct: 346 DWGPVPHEVKIARLERLQKLQRRISGEITAALVGSEVEVMVEGHSRYDATKRFGRTPENR 405 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V + + G + V++ + L G+ V Sbjct: 406 TVNFDG-DAPAGSFVTVKVERATPNQLAGKQV 436 >gi|303233772|ref|ZP_07320426.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna BVS033A4] gi|302495206|gb|EFL54958.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Finegoldia magna BVS033A4] Length = 461 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 174/446 (39%), Positives = 271/446 (60%), Gaps = 16/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + + ++GCQMN +DS +++ + + G+E+ + DAD I+ NTC +RE A KVY LG Sbjct: 27 YSIITHGCQMNEHDSEKIKTLLENMGFEKSDEKLDADFIIFNTCLVRENAEMKVYGQLGA 86 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILR-RSPIVNVVVGPQTYYRLPELLERA- 143 ++NLK +E D+L+ V GC+ Q +I+R + P V++V G LP L++R Sbjct: 87 LKNLK----RENPDMLIAVCGCMMQTGPARDIIREKYPQVDIVFGVNNINSLPYLIDRHL 142 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK VVD + +D E ++I R ++ I GC+ FCT+C+VPY RG E Sbjct: 143 SSGKLVVDIERK-DDIDEDITI-----KRDNEYVGYVNIMTGCNNFCTYCIVPYARGREQ 196 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SRS+ ++ E +++++ G +ITLLGQNVN++ GK L+ TF++LL +++++GL RL Sbjct: 197 SRSVESILSEVKRMVNQGYKDITLLGQNVNSY-GKTLE-HPVTFTELLTKVNDVEGLERL 254 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD LI+A G LD + +HLP Q+GS+ +L+ M+RR+T Y + +++++ Sbjct: 255 RFLTSHPKDISDELIEAMGKLDKVCENIHLPFQAGSNSVLERMHRRYTKESYLEKVEKLK 314 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 I S+D IVGFPGET++DF+ T+D+V K+GY QAF+FKY+ R GT +QVD Sbjct: 315 KSVKGITFSTDIIVGFPGETEEDFQDTLDVVRKVGYEQAFTFKYNRRPGTKADLFEDQVD 374 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 E+VK +RL L N + +G I EVLIE K + + GR+ + V + Sbjct: 375 EDVKQDRLERLLDVAYPIFYEKNKSYLGTIQEVLIEGESKNNPEVMTGRTRTFKLVNVKC 434 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ +I D L GE+V Sbjct: 435 DKSYIGKLVNTKIVDFNSFALTGEMV 460 >gi|312143592|ref|YP_003995038.1| RNA modification enzyme, MiaB family [Halanaerobium sp. 'sapolanicus'] gi|311904243|gb|ADQ14684.1| RNA modification enzyme, MiaB family [Halanaerobium sp. 'sapolanicus'] Length = 442 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 174/449 (38%), Positives = 278/449 (61%), Gaps = 21/449 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + + +YGCQMN +DS ++ M + GY N +++AD+++LNTC IRE A KV+ LG+ Sbjct: 7 YHIITYGCQMNEHDSEKLAGMLENIGYNNTNKLENADIVLLNTCTIRENAELKVFGKLGQ 66 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ K ++ DL++ + GC+ Q E EEI ++ V+++ G +++PEL+++ Sbjct: 67 LKEYK----RKNPDLIIGIGGCMMQLEEPVEEIYKKYRHVDLIFGTHNIHQVPELIKKIE 122 Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + RVV+ V D+ E L I D R+ +A+++I +GCD FCT+C+VPY RG E Sbjct: 123 KNRERVVE----VWDQEEGL-IPDLPSQRESEHSAWISIIQGCDNFCTYCIVPYVRGRER 177 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR L ++ EA KL GV E+TLLGQNVN++ G L E+ F LL L+++ L R+ Sbjct: 178 SRPLEAIIKEAEKLAAEGVKEVTLLGQNVNSY-GNDL-AEEIDFPLLLEELNKVDSLARI 235 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHPRD S+ L+ A +L+ + ++HLP+QSGS++ILK MNR ++ Y + I+ Sbjct: 236 RFMTSHPRDFSEKLLLAIKNLEKVAKHIHLPIQSGSNKILKEMNRGYSREYYIDTVKEIQ 295 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P+ AIS+DFIVGFPGE+D+DF T+ LV ++ + A++F YSPR GTP + +Q+ Sbjct: 296 NKMPEAAISTDFIVGFPGESDEDFEQTLKLVKELRFDMAYTFIYSPRSGTPAAKREDQIA 355 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439 E VK ER L+ +Q ++ Q+ N +G+I ++L+ +++ GR+ + Sbjct: 356 EEVKKERLNKLMDIQNRISYQK---NQKLIGKIQKILVTGPSNRDENVYEGRTGTNKICF 412 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 +N + IG I+KV+I K TL G +V Sbjct: 413 INKRPDLIGKIVKVKIDSAKSWTLQGTVV 441 >gi|327540187|gb|EGF26778.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopirellula baltica WH47] Length = 479 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 175/462 (37%), Positives = 269/462 (58%), Gaps = 30/462 (6%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 ++K+ GCQMNV DS + GY V++ +ADL++ NTC IRE+A EK YS LG++ Sbjct: 9 YIKTVGCQMNVLDSEMVIADLKRHGYTVVDTPGEADLLLYNTCSIREQAEEKTYSALGKL 68 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 + K ++ + V GC+AQ + E I RR+P V++VVGP + +P++L + G+ Sbjct: 69 KETKARHPEK----TIGVMGCMAQKDQETIFRRAPFVDMVVGPGQLHAIPDMLTKVTSGE 124 Query: 148 -RVVDTDYSVED--------KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 R + +D E + R A+L IQ GCDKFCT+CVVP T Sbjct: 125 GRQIAVSLGRKDGKQTVVARSHETFDPLRDPTMRPTPFQAYLRIQIGCDKFCTYCVVPNT 184 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG E RS ++V EAR L + G EITLLGQ VN++R +G DGE + LL L +I Sbjct: 185 RGPEQGRSPEEIVSEARVLAEQGALEITLLGQTVNSYRHRGPDGE-TDMAGLLERLHDID 243 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+++ T++P+DM+ L++ DL + PYLH+P QSGSD +LK M R +T +Y ++ Sbjct: 244 GLKRIKFVTNYPKDMTARLLETIRDLPKVSPYLHVPAQSGSDAVLKRMKRGYTIADYMEM 303 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSN 377 +RI ++ P+ ++SSDFIVGF GETD+DF+ ++ L+++ + +F F+YS R GT +N Sbjct: 304 FERIETILPEASVSSDFIVGFCGETDEDFQKSVKLIERCRFKNSFIFQYSVREGTKAAAN 363 Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK------- 427 +++ V VKA R LL +Q ++ ++ N +G +EVL+E K+ K Sbjct: 364 LIDDVPREVKAARNNELLAVQDRISKED---NQKLIGDTVEVLVEGPSKKADKSDLDAPI 420 Query: 428 --LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 + GR+ + VV + G ++ ++I DV TL G + Sbjct: 421 VQMTGRTICDRIVVFDGNRRQAGQLMDIQIDDVSSHTLIGRV 462 >gi|291166609|gb|EFE28655.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Filifactor alocis ATCC 35896] Length = 483 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 178/450 (39%), Positives = 280/450 (62%), Gaps = 19/450 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++ + ++GCQMN +DS + MF GYE + +DAD+I+ NTC IRE A KVY L Sbjct: 39 KYMITTWGCQMNEHDSENLSGMFEYMGYELTDREEDADVILYNTCAIRENAELKVYGNLS 98 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL--E 141 ++++K +R D+++ V GC+ Q EE+ ++ V++V G Y+ PE+L + Sbjct: 99 LLKHIKENR----DDMIIGVCGCMMQQPHVVEELKKKYSHVDIVFGTHNIYQFPEMLYQQ 154 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 +++D + ++ + I++G RK V +F+ I GC+ FCT+C+VPYTRG Sbjct: 155 LTSNAGQLIDV-WDIDGQ-----IIEGLPTTRKFDVKSFVNIMYGCNNFCTYCIVPYTRG 208 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR ++DE R L + G+ EITLLGQNVN++ GK L+ + TF+DLL +++I G+ Sbjct: 209 RERSREPKDILDEIRFLANEGIKEITLLGQNVNSY-GKTLE-QNYTFADLLRDVNDIDGI 266 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ +SHP+D+SD LI A +L + LHLP+QSGS R+LK MNR ++ +Y ++D Sbjct: 267 ERIRFMSSHPKDLSDELIDAMAELPKVCESLHLPIQSGSTRLLKKMNRHYSKEDYYLLVD 326 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R+ P+I ++D +VGFPGET++DF TM++V+++ Y AF+F YS R GTP M + Sbjct: 327 KLRAKIPNIGFTTDIMVGFPGETEEDFLETMEVVERVQYDSAFTFLYSVRKGTPAEKMED 386 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 QV E VK ER L + + N A G+++EVL+E K ++ KL GR+ + V Sbjct: 387 QVPEEVKKERFQRLLEPVNRIAAEKNHAYAGKVVEVLVESVSKRDETKLTGRTRENKLVN 446 Query: 440 LNSKNHN-IGDIIKVRITDVKISTLYGELV 468 + + IG I+ V+IT+ K +L GE+V Sbjct: 447 FDRPEGDWIGKIVHVKITNPKSFSLNGEMV 476 >gi|169350629|ref|ZP_02867567.1| hypothetical protein CLOSPI_01401 [Clostridium spiroforme DSM 1552] gi|169292683|gb|EDS74816.1| hypothetical protein CLOSPI_01401 [Clostridium spiroforme DSM 1552] Length = 481 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 174/462 (37%), Positives = 269/462 (58%), Gaps = 15/462 (3%) Query: 10 VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69 V H+ + ++ + V +++++++YGCQ N DS + + S Y + + +AD+I+LNT Sbjct: 30 VYHVPADMI-KAGVGKKYYIQTYGCQANERDSETLSGILESMSYRATDEIKEADIIILNT 88 Query: 70 CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVV 127 C IRE A EKV+ +G ++NLK K +L+ + GC+AQ E IL + P V+++ Sbjct: 89 CAIRENAEEKVFGKVGYVKNLK----KTNPNLIFAMCGCMAQEEVVVNRILEKHPHVDLI 144 Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187 G +RLPELL+ A + K ++ +S E I + R A++ I GC+ Sbjct: 145 FGTHNIHRLPELLKEAFYSKEMIIEVWSKEGDV----IENAPVKRDSKHKAWVNIMYGCN 200 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247 KFCT+C+VPYTRG E SR +V E L+ +G EITLLGQNVN++ GK L G F Sbjct: 201 KFCTYCIVPYTRGKERSRLAKDIVKEVESLVADGYQEITLLGQNVNSY-GKDL-GNDYNF 258 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 S+LL +++ G+ R+R+TTSHP D S+ +IK D +MP +HLPVQSG++ +LK M Sbjct: 259 SNLLEDVAKT-GIPRIRFTTSHPWDFSEDMIKIIAKYDNIMPAIHLPVQSGNNEVLKLMG 317 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 RR+T +Y ++ +I+ PD I++D IVGFP ET + + T+ L + Y A++F Y Sbjct: 318 RRYTREQYLELFYKIKKYIPDCTITTDIIVGFPNETHEQYLDTLSLYQECEYDLAYTFVY 377 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKG 426 SPR GTP + M++ V K +RL L + + E+ N + + +EVL++ K+ Sbjct: 378 SPREGTPAAKMVDNVSSEEKDQRLYRLNEIVNEKAYKQNQRFLNKTVEVLVDGTSKKDDT 437 Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 L G + + V +IG IIKV+IT+ K L GE + Sbjct: 438 MLTGYTRHQKLVNFKGNPKDIGKIIKVKITEAKTWALKGEAI 479 >gi|300868939|ref|ZP_07113544.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Oscillatoria sp. PCC 6506] gi|300333062|emb|CBN58736.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Oscillatoria sp. PCC 6506] Length = 452 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 180/455 (39%), Positives = 275/455 (60%), Gaps = 23/455 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+R+ + ++GCQMN DS RM + G+E ++A LI+ NTC IR+ A KVYS Sbjct: 4 TPRRYHITTFGCQMNKADSERMAGILEDMGFEWSEDPNEASLILYNTCSIRDSAEHKVYS 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +LGR + R + +L ++VAGCVAQ EGE +LRR P +++V+GPQ RL +LLE+ Sbjct: 64 YLGR----QAGRKRVEPELTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQ 119 Query: 143 ARFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G +VV TD + +ED + R VTA++ + GC++ CT+CVVP RG Sbjct: 120 VFDGNQVVATDAVHIMEDITKP--------RRDSKVTAWVNVIYGCNERCTYCVVPNVRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSL 254 IE SR+ + E +L G E+TLLGQN++A+ G+ L G K T +DLLY + Sbjct: 172 IEQSRTPKAIRAEMEELGRQGYKEVTLLGQNIDAY-GRDLPGTKPDGSNQYTLTDLLYYV 230 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 S++ G+ R+R+ TSHPR ++ LIKA +L + + H+P QSG + ILK+M R +T + Sbjct: 231 SDVPGIERIRFATSHPRYFTERLIKACAELPQVCEHFHIPFQSGDNDILKAMARGYTQEK 290 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 YR+II+ IR PD +IS+D IVGFPGE++ F T++LV + + + YSPR GTP Sbjct: 291 YRRIIETIRQYMPDASISADAIVGFPGESEAQFEKTLNLVVDMRFDLVNTAAYSPRPGTP 350 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP 433 + Q+ E VKA+RL L + + + + +G+I EVL+E ++ K+ +++GR Sbjct: 351 AALWDTQLSEEVKADRLQRLNHVVTQTAMERSQRYLGRIEEVLVEDQNQKDATQVMGRGR 410 Query: 434 WLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGEL 467 + L + G +++V+ITDV+ +L G+L Sbjct: 411 GNRLTFLRGNIEELRGQLVQVKITDVRAFSLTGDL 445 >gi|257063789|ref|YP_003143461.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB [Slackia heliotrinireducens DSM 20476] gi|256791442|gb|ACV22112.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB [Slackia heliotrinireducens DSM 20476] Length = 451 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 176/458 (38%), Positives = 275/458 (60%), Gaps = 15/458 (3%) Query: 18 VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 ++Q + + F+V +YGCQMN +DS R+ M + G R + +D+++++ TC +RE A Sbjct: 1 MNQFLTGRSFYVFTYGCQMNEHDSERIVGMLEACGAHRTDVFEDSEIVIFMTCCVREAAD 60 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 ++ + I+N+ R E +V + GC+ Q +G++++ V+VV G Q RLP Sbjct: 61 VRLRGQVNSIKNVPLPRTSELKKRVVCIGGCIGQRDGQQLIDDMHHVDVVFGTQNIERLP 120 Query: 138 ELLERA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 L+ G + + V+++ + S D R+ A+L I GC+ FCT+C+VP Sbjct: 121 YLINGVLSRGGHIAE----VQEESDTFS-TDLPSKREHDWAAWLPITVGCNNFCTYCIVP 175 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 Y RG E SR++ VV +A+ L+ GV EITLLGQNVN++ G+ L GE F+D+L ++ Sbjct: 176 YVRGRERSRAIESVVADAQALVAEGVQEITLLGQNVNSY-GRDLYGEP-RFADVLKGVAA 233 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 G+ RLR+ TSHP+D++D +I+A G L LMP LHLPVQSGSD ILK M+R +T Y Sbjct: 234 -TGVPRLRFATSHPKDLTDEVIEAFGTLGNLMPALHLPVQSGSDAILKRMHRSYTVEHYL 292 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +ID++R+ PDI++S+D IVGFPGET++DF+AT DLV+K+GY+Q F+F YSPR GTP + Sbjct: 293 GLIDKLRAACPDISLSTDIIVGFPGETEEDFQATYDLVEKVGYSQVFTFIYSPREGTPAA 352 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSP-- 433 M + +V ER L + ++++ N + ++VL+E + ++ GRSP Sbjct: 353 KMKDDTPRSVIQERFERLVQMVQDKAYEQNQRFADRTLDVLVEGVSQRNDSIIAGRSPHN 412 Query: 434 -WLQSVVLNSKN--HNIGDIIKVRITDVKISTLYGELV 468 + + + K G II V + + K L G +V Sbjct: 413 AMVHAPIPEGKTIEQLKGTIIPVHVDEAKTWYLSGTVV 450 >gi|269127492|ref|YP_003300862.1| RNA modification enzyme, MiaB family [Thermomonospora curvata DSM 43183] gi|268312450|gb|ACY98824.1| RNA modification enzyme, MiaB family [Thermomonospora curvata DSM 43183] Length = 497 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 168/444 (37%), Positives = 265/444 (59%), Gaps = 24/444 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ + +++YGCQMNV+DS R+ + GY ++ D++V NTC +RE A ++Y Sbjct: 10 APRTYQIRTYGCQMNVHDSERLAGLLEEAGYVAAGESEEPDVVVFNTCAVRENADNRLYG 69 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LG +R +K++R + + V GC+AQ + E I+RR+P V+VV G LP LLER Sbjct: 70 NLGHLRPVKDARP----GMQIAVGGCLAQKDREAIVRRAPWVDVVFGTHNIGSLPALLER 125 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 AR + V+ ++E L R+ A++ I GC+ CTFC+VP RG Sbjct: 126 ARIQREAQVEIKEALETFPSTLPT-----RRESPYAAWVAISVGCNNTCTFCIVPSLRGR 180 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E R +++ E L+ GV E+TLLGQNVNA+ + G++ F+ LL + +I+GL Sbjct: 181 EKDRRPGEILAEIEALVAEGVLEVTLLGQNVNAYGSEF--GDRQAFAKLLRACGQIEGLE 238 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HPRD +D +I A + +MP LH+P+QSGSDRIL++M R + + II+R Sbjct: 239 RVRFTSPHPRDFTDDVIAAMAETPNVMPSLHMPLQSGSDRILRAMRRSYRQERFLGIIER 298 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ P+ AI++D IVGFPGETD+DF T+ +V + +A AF+F+YS R GTP + M Q Sbjct: 299 VRAAMPEAAITTDIIVGFPGETDEDFEQTLHVVRQARFAGAFTFQYSKRPGTPAAEMDGQ 358 Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434 V + V + ERL+ LQ+++ ++ N +G+ +EVL+ E G++ ++ GR+P Sbjct: 359 VPKEVVQERYERLVALQEQISWEE---NKKQLGRTLEVLVAEGEGRKDDATRRMSGRAPD 415 Query: 435 LQSVVLNSKNHNI--GDIIKVRIT 456 + V + GD++ V +T Sbjct: 416 NRLVHFRPPKEPVRPGDMVTVEVT 439 >gi|72161215|ref|YP_288872.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermobifida fusca YX] gi|123774758|sp|Q47RR8|MIAB_THEFY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|71914947|gb|AAZ54849.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermobifida fusca YX] Length = 494 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 159/395 (40%), Positives = 247/395 (62%), Gaps = 16/395 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS R+ + + GY+R D++V NTC +RE A ++Y LG+ Sbjct: 7 YQVRTYGCQMNVHDSERLSGLLEAAGYQRAAEGTTPDVVVFNTCAVRENADNRLYGNLGQ 66 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R +K++ D+ + V GC+AQ + EI+RR+P V+VV G LP LLERAR Sbjct: 67 LRPVKDA----NPDMQIAVGGCLAQKDRGEIIRRAPWVDVVFGTHNIGSLPALLERARVQ 122 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + + + ER R+ A++ I GC+ CTFC+VP RG E R Sbjct: 123 R---EAQVEIVESLERFPSTLP-TRRESVYAAWVAISVGCNNTCTFCIVPALRGKEKDRR 178 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 ++ E R ++ G E+TLLGQNVNA+ + G++ FS LL + EI+GL R+R+T Sbjct: 179 PGDILAEIRAVVAEGAIEVTLLGQNVNAYGSEF--GDRQAFSKLLRACGEIEGLERVRFT 236 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + HPRD +D +I A + +MP LH+P+QSGSDRIL++M R + A + +I++++R Sbjct: 237 SPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDRILRAMRRSYRAERFLRIVEKVREAI 296 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD AI++D IVGFPGET++DF T+ +++++ +A AF+F+YS R GTP ++M QV V Sbjct: 297 PDAAITTDVIVGFPGETEEDFAETLRVMEEVRFAHAFTFQYSKRPGTPAASMDNQVPREV 356 Query: 387 ---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + +RLL LQ+++ E++ N VG+ +EVL+ Sbjct: 357 VKERYQRLLELQERISEEE---NAKFVGREVEVLV 388 >gi|304440470|ref|ZP_07400359.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371222|gb|EFM24839.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii ATCC BAA-1640] Length = 476 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 181/453 (39%), Positives = 267/453 (58%), Gaps = 34/453 (7%) Query: 28 FVKSYGCQMNVYDS------LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +++++GCQMN +DS LR D + S ++DL ++NTC IR+ A +KVY Sbjct: 43 YIETFGCQMNEHDSEKIDWLLRQMDFYMSDR--------NSDLYIINTCSIRKNAEDKVY 94 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE--ILRRSPIVNVVVGPQTYYRLPEL 139 LG ++ K +E +LLV V GC+ Q + +L + P V+++ G Y+ P+L Sbjct: 95 GRLGELKGKK----RENENLLVAVCGCMMQRKESRDIVLEKFPNVDMIFGTNNIYKFPKL 150 Query: 140 L-ERARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 L ER G R VD +YS ED G NR +F+ I GC+ FCT+C+VP Sbjct: 151 LLERLENGVRAVDIEENYSNEDNL-------LGANRMYSFKSFVNIMYGCNNFCTYCIVP 203 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 YTRG E SR +V+E + L +GV E+TLLGQNVN++ GK L +F DLL ++E Sbjct: 204 YTRGREKSRRPMDIVNEIKGLASHGVKEVTLLGQNVNSY-GKSL-SNNVSFVDLLKMVNE 261 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I G+ R+R+ TSHPRD S L A+ DLD L +LHLPVQ+GS ++L+ MNR +T EY Sbjct: 262 IDGIERIRFMTSHPRDFSKELAYAYRDLDKLKNFLHLPVQAGSSKVLRDMNRHYTKEEYI 321 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 + ID ++ + P+IA+S+D +VGFP ET++DF+ T+DL + Y +F+F YS R GT Sbjct: 322 RKIDMVKEIVPEIALSTDLMVGFPTETEEDFKDTLDLCKYVEYDTSFTFIYSMREGTKAY 381 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWL 435 M +QV E +K +R L + Q+ N+ +G++ +VL+E K ++ KL GR+ Sbjct: 382 EM-DQVPEEIKHDRFNRLLDLIYPIQLKKNENEIGKVRKVLVESTSKSDENKLSGRTDEF 440 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V + IG I+ V ITD +L G+LV Sbjct: 441 KLVNFDGPKDLIGKIVDVNITDANTFSLKGDLV 473 >gi|195953226|ref|YP_002121516.1| RNA modification enzyme, MiaB family [Hydrogenobaculum sp. Y04AAS1] gi|229890609|sp|B4U8S7|MIAB_HYDS0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|195932838|gb|ACG57538.1| RNA modification enzyme, MiaB family [Hydrogenobaculum sp. Y04AAS1] Length = 435 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 172/447 (38%), Positives = 269/447 (60%), Gaps = 26/447 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++F+K+YGCQMN+ DS +++ + +QGYE +DADL++LNTC IREK +KV+S LG Sbjct: 2 KYFIKTYGCQMNINDSEKIKGILQTQGYEPATREEDADLVILNTCTIREKPDQKVWSHLG 61 Query: 86 RIRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 I+ LK N IK G V GC+AQ G EI + P +++V G + + +P+LLE Sbjct: 62 EIKKLKSINPNIKIG------VCGCMAQRAGYEIASKMPFIDLVFGTKNIHHMPKLLEDV 115 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G R ++ +E++ +I+D R A++TI GCDK CT+CVVP+TRG E Sbjct: 116 KVGNRAIEI---LEEEDPSENILDSYPTVRDNSYCAYVTIMRGCDKECTYCVVPFTRGKE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR+ ++DE + L+D+GV EI L+GQNV A+ GK +D F LL ++S+I+G+ R Sbjct: 173 RSRNPQSILDEVKSLVDSGVMEIHLIGQNVTAY-GKDID---YPFYKLLENISKIEGVKR 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TT HP DM+D +I+ +L ++ +LHLP Q+GSDRIL+ M R +T Y I+++ Sbjct: 229 IRFTTGHPIDMTDDIIETMANLPNMVNHLHLPFQAGSDRILELMKRNYTKAYYLNRIEKL 288 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++ DI S+D I+GFP ET++DF+ T+D+V + + Q FSFKYS R TP M + + Sbjct: 289 KAKIKDITFSTDIIIGFPTETEEDFQHTLDVVQTVEFEQVFSFKYSKRPNTPAYYMEDDL 348 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACV----GQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 + +K +R+ K+L E Q + + + +VL+E K+ +GR+ Sbjct: 349 TDEIKTDRI----KRLLEIQKAITSKLMQRYKNTVQKVLVE--DKKGNTYIGRTTTNVWC 402 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465 + S +G ++V I +L G Sbjct: 403 NITSSQDILGKEVEVLIAKAGFQSLDG 429 >gi|258405711|ref|YP_003198453.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfohalobium retbaense DSM 5692] gi|257797938|gb|ACV68875.1| RNA modification enzyme, MiaB family [Desulfohalobium retbaense DSM 5692] Length = 445 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 173/448 (38%), Positives = 266/448 (59%), Gaps = 15/448 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF + ++GCQMNV DS + G E + + A++ V+NTC +REK +KVYS LG Sbjct: 2 RFHIITHGCQMNVCDSDWLHRALVDLGGEPADE-ESAEVFVVNTCSVREKPEQKVYSLLG 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R++ + ++ V V GCVAQ G +R P V +V G +P+ ++R R Sbjct: 61 RLQGY----WQRNPNVFVAVGGCVAQQVGTRFWKRFPHVRLVFGTDGIAMVPQAVDRLRS 116 Query: 146 GKRVVDTDYSVEDKF-ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++ + E+ + ER + + AF+ I +GCD +C +C+VPYTRG + S Sbjct: 117 DPQLRLSLLDFEEHYPEREQLWP---EAEVPAQAFVNIMQGCDNYCAYCIVPYTRGRQKS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS + V+ E R+L G EITLLGQNVN++ G+ +G+ +F+ LL + I G+ ++R Sbjct: 174 RSSAAVLQECRELARRGAREITLLGQNVNSY-GQDANGDGTSFAALLEQVCAIPGIEQVR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP+D++ +I A G L L P+LHLP+QSGSDRILK+M RR+T Y I+ +R Sbjct: 233 FTTSHPKDIAPEVIAAFGRLPELSPHLHLPLQSGSDRILKAMRRRYTRQRYLDIVTGLRQ 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RP+I +++D IVGFPGET+ DF T++++ ++G+A +FSFKYS R G M ++V E Sbjct: 293 ARPEITLTTDLIVGFPGETEADFEQTLEMMREVGFASSFSFKYSDRPGVAAEQMEDKVPE 352 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441 +K+ RL LQ E A VG+ + VL+ + G++ G V GR P + V Sbjct: 353 EIKSHRLQRLQSLQEELTGEALQAEVGRHVTVLLREPGRQDGGGVIWRGRDPGGRVVNCR 412 Query: 442 SK--NHNIGDIIKVRITDVKISTLYGEL 467 ++ + IG + VR+T+ K +L+GE+ Sbjct: 413 TELDSALIGSYVGVRVTEAKKHSLFGEV 440 >gi|119510198|ref|ZP_01629336.1| tRNA-i(6)A37 modification enzyme MiaB [Nodularia spumigena CCY9414] gi|119465148|gb|EAW46047.1| tRNA-i(6)A37 modification enzyme MiaB [Nodularia spumigena CCY9414] Length = 454 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 182/454 (40%), Positives = 270/454 (59%), Gaps = 23/454 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + + ++GCQMN DS RM + G+E +DADLI+ NTC IR+ A KVYS+L Sbjct: 6 RHYHIITFGCQMNKADSERMAGILEDMGFEWSEDPNDADLILYNTCTIRDNAEHKVYSYL 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + R +E L ++VAGCVAQ EGE +LRR P +++V+GPQ RL +LL Sbjct: 66 GR----QAKRKQEEPGLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLTSVL 121 Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +VV T+ + +ED + R VTA++ I GC++ CT+CVVP RG+E Sbjct: 122 NGNQVVATESVHIMEDITQP--------RRDSSVTAWVNIIYGCNERCTYCVVPNVRGVE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256 SR+ + E +L G EITLLGQN++A+ G+ L G F+DLLY + + Sbjct: 174 QSRTPEAIRAEMEELGRQGYKEITLLGQNIDAY-GRDLPGTTPEGRHLHNFTDLLYYVHD 232 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I G+ RLR+ TSHPR ++ LIKA +L + + H+P QSG + +LK+M+R +T +YR Sbjct: 233 IPGIERLRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNELLKAMSRGYTHEKYR 292 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +IID IR PD +IS D IVGFPGET+ F T+ LV+ IG+ + YSPR GTP + Sbjct: 293 RIIDTIRRYMPDASISGDAIVGFPGETEAQFENTLKLVEDIGFDLLNTAAYSPRPGTPAA 352 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWL 435 Q+ E VK++RL L + + + +G+I +VL+E ++ K+ +++GR+ Sbjct: 353 LWSNQLSEEVKSDRLQRLNHLVNVKASERSQRYMGRIEDVLVEDQNSKDPTQVMGRTGGN 412 Query: 436 QSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468 + + G I+KV+IT+V+ +L GE V Sbjct: 413 RLTFFTGDISQLKGQIVKVKITEVRAFSLTGEPV 446 >gi|256827172|ref|YP_003151131.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB [Cryptobacterium curtum DSM 15641] gi|256583315|gb|ACU94449.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB [Cryptobacterium curtum DSM 15641] Length = 448 Score = 306 bits (783), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 179/458 (39%), Positives = 264/458 (57%), Gaps = 35/458 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + ++GCQMN +DS R+ + S G V+S +AD + TC +REKA E++ +G+ Sbjct: 7 FSITTFGCQMNKHDSERIAGLLESLGSIAVSSPAEADFSIFMTCCVREKADERL---MGQ 63 Query: 87 IRNLKNSRIKEG---GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + +KN ++G G V + GC+ Q +GE++L + V+VV G LP+LLE A Sbjct: 64 VATMKNDAPRKGSPFGRRFVAIGGCIGQRDGEKLLTQLDNVDVVFGTHNMETLPQLLESA 123 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDG--------GYNRKRGVTAFLTIQEGCDKFCTFCVV 195 +E R I+DG +R+ A+L I GC+ FCTFC+V Sbjct: 124 ------------IEKGSRRAEIIDGRAEFHDELPEDREHPWAAWLPITVGCNNFCTFCIV 171 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PY RG EISR L ++ D+AR + GV EITLLGQNVN++ G+ L G F +L +++ Sbjct: 172 PYVRGREISRPLDEIADQARAYVQQGVKEITLLGQNVNSY-GRDLYGSP-RFDAVLDAVA 229 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 G+ R+R+ TSHP+D++D +I+ L LMP LHLP QSGS+RIL +MNRR+T Y Sbjct: 230 -ASGIERIRFATSHPKDLTDGVIERFATLPNLMPALHLPAQSGSNRILAAMNRRYTIEHY 288 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 +I+++R VRP IA+S+D IVGFPGET+DDF T +LV ++GY Q F+F YS R GTP Sbjct: 289 EGLIEKLRVVRPYIALSTDIIVGFPGETEDDFEQTCELVKRVGYNQVFTFIYSRRDGTPA 348 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPW 434 + + + +V ER L +RE ++ N + + + VLIE K ++ G+SP+ Sbjct: 349 ARLPDDTPRSVIQERFDRLVSIVREGALARNRLSLDRTMPVLIEGISKRNASMMAGKSPY 408 Query: 435 LQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGEL 467 Q+V L S G I+ I + + L G + Sbjct: 409 NQTVHLPLPAGTSLQQWEGTIVTAHIEEARTWYLRGSM 446 >gi|126699594|ref|YP_001088491.1| putative radical SAM protein [Clostridium difficile 630] gi|254975583|ref|ZP_05272055.1| putative radical SAM protein [Clostridium difficile QCD-66c26] gi|255092971|ref|ZP_05322449.1| putative radical SAM protein [Clostridium difficile CIP 107932] gi|255101116|ref|ZP_05330093.1| putative radical SAM protein [Clostridium difficile QCD-63q42] gi|255306984|ref|ZP_05351155.1| putative radical SAM protein [Clostridium difficile ATCC 43255] gi|255314712|ref|ZP_05356295.1| putative radical SAM protein [Clostridium difficile QCD-76w55] gi|255517386|ref|ZP_05385062.1| putative radical SAM protein [Clostridium difficile QCD-97b34] gi|255650493|ref|ZP_05397395.1| putative radical SAM protein [Clostridium difficile QCD-37x79] gi|306520455|ref|ZP_07406802.1| putative radical SAM protein [Clostridium difficile QCD-32g58] gi|123363359|sp|Q187U6|MIAB_CLOD6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|115251031|emb|CAJ68861.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB (tRNA-i(6)A37 methylthiotransferase) [Clostridium difficile] Length = 478 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 171/447 (38%), Positives = 275/447 (61%), Gaps = 18/447 (4%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 F +++GCQMN +DS ++ M GY+ ++++DLI+ NTC +RE A KVY LG++ Sbjct: 42 FTQTFGCQMNEHDSEKLCSMLEEMGYQMSMMVEESDLIIYNTCAVRENAELKVYGNLGQL 101 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144 ++LK + D+ + V GC+ Q EE+ ++ V+++ G Y+ P+LL E Sbjct: 102 KHLKG----KNPDMKIAVCGCMMQQPHVVEELRKKYKHVDLIFGTHNLYKFPQLLTESIN 157 Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +VD + V+ + +++G NRK + AF+ I GC+ FCT+C+VPYTRG E Sbjct: 158 SDKMLVDV-WDVDGE-----VIEGLRSNRKFELKAFVNIMYGCNNFCTYCIVPYTRGRER 211 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR+ +++E ++L+ NG EITLLGQNV+++ GK L+ +FS+LL +++I+G+ R+ Sbjct: 212 SRTPEDIINEIKELVANGTKEITLLGQNVDSY-GKTLEN-PVSFSELLRKVNDIEGIERV 269 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD +I A D D + +LHLP+Q GS +LK MNR +T Y +II++ + Sbjct: 270 RFMTSHPKDISDEVIYAIRDCDKVCEFLHLPIQCGSSSLLKKMNRHYTKEYYLEIIEKAK 329 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P IA S+D ++GFPGET++D T+D+V+K+ Y AF+F YS R GTP + M Q+ Sbjct: 330 KEVPGIAFSTDLMIGFPGETEEDLLDTLDVVEKVRYDSAFTFIYSKRQGTPAAKMENQIP 389 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442 E++K +R + + + ND +I+EVL+E K + K GR+ + V Sbjct: 390 EDIKHDRFNRVLEAVNRISAEINDGYKDRIVEVLVEGRSKNNENKFAGRTRQNKLVNFEG 449 Query: 443 KNHN-IGDIIKVRITDVKISTLYGELV 468 N + IG ++ V+IT+ + +L G LV Sbjct: 450 GNDDLIGKLVMVKITEPRTFSLNGILV 476 >gi|15842271|ref|NP_337308.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium tuberculosis CDC1551] gi|13882563|gb|AAK47122.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] Length = 512 Score = 306 bits (783), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 171/462 (37%), Positives = 268/462 (58%), Gaps = 27/462 (5%) Query: 23 VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P R + V++YGCQMNV+DS R+ + + GY R +AD++V NTC +RE A ++Y Sbjct: 22 APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 81 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L + R + D+ + V GC+AQ + + +L R+P V+VV G LP LLE Sbjct: 82 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLXRAPWVDVVFGTHNIGSLPTLLE 137 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 RAR K V+ +++ L +R+ A+++I GC+ CTFC+VP RG Sbjct: 138 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 192 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256 E+ RS + ++ E R L+++GV E+TLLGQNVNA+ L + F++LL + + Sbjct: 193 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 252 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I GL R+R+T+ HP + +D +I+A + P LH+P+QSGSDRIL++M R + A Y Sbjct: 253 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 312 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 II+R+R+ P AI++D IVGFPGET++DF AT+D+V + +A AF+F+YS R GTP + Sbjct: 313 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 372 Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429 + Q+ + V + ERL+ LQ+++ + N A VGQ +EVL+ K ++ Sbjct: 373 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 429 Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 GR+ + V + + GD+I ++T+ L + V Sbjct: 430 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 471 >gi|113474257|ref|YP_720318.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Trichodesmium erythraeum IMS101] gi|123057124|sp|Q119H9|MIAB_TRIEI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|110165305|gb|ABG49845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Trichodesmium erythraeum IMS101] Length = 451 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 177/453 (39%), Positives = 274/453 (60%), Gaps = 23/453 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + + ++GCQMN DS RM + + G + AD+I+ NTC IR+ A +KVYS+L Sbjct: 6 RHYHITTFGCQMNKADSERMAGILDNMGLISSEDPNKADIILYNTCTIRDNAEQKVYSYL 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + R + DL ++VAGCVAQ EG +LRR P +++++GPQ RL +LLE+ Sbjct: 66 GR----QAKRKHKQPDLTLIVAGCVAQQEGAALLRRVPELDLIMGPQHANRLQDLLEQVF 121 Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +VV T+ + VED + R +TA++ I GC++ CT+CVVP RG+E Sbjct: 122 NGNQVVATEPIHIVEDITKP--------RRDSKITAWVNIIYGCNEHCTYCVVPSVRGVE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256 SR+ + E +L G EITLLGQN++A+ G+ L G K TF+DLLY + + Sbjct: 174 QSRTPEAIRAEMEELGRQGYQEITLLGQNIDAY-GRDLPGVTKEGRNKYTFTDLLYYVHD 232 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + G+ R+R+ TSHPR ++ LI+A +L + + H+P QSG +++LK+M R +T +YR Sbjct: 233 VPGVERIRFATSHPRYFTERLIRACAELPKVCEHFHIPFQSGDNKLLKAMARGYTHEKYR 292 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +IID+IR + PD +IS+D IVGFPGET+ F T+ LV+ IG+ Q + YSPR GTP + Sbjct: 293 RIIDKIRELMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAA 352 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWL 435 Q+ E VK++RL L + + + +G+I EVL+E + K +++GR+ Sbjct: 353 LWENQLGEEVKSDRLQRLNHLVGVKAADRSQRYMGRIEEVLVEDMNPKNAAQVMGRTRGN 412 Query: 436 QSVVLNSKNHNI-GDIIKVRITDVKISTLYGEL 467 + + G ++KV+IT+V+ +L GE+ Sbjct: 413 RLTFFEGDIAQLKGKLVKVKITEVRPFSLTGEV 445 >gi|212696093|ref|ZP_03304221.1| hypothetical protein ANHYDRO_00629 [Anaerococcus hydrogenalis DSM 7454] gi|212676722|gb|EEB36329.1| hypothetical protein ANHYDRO_00629 [Anaerococcus hydrogenalis DSM 7454] Length = 450 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 171/449 (38%), Positives = 269/449 (59%), Gaps = 19/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + ++GCQMN +DS R+ + GY + ++AD I+ NTC +RE A K+Y + Sbjct: 16 KKYNITTFGCQMNEHDSERISYILEDLGYTLTDDRNEADFILFNTCLVRENAELKLYGQV 75 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELL-E 141 ++ LK +E + ++ V+GC+ Q E I ++ V+++ G + LP+LL + Sbjct: 76 SSLKKLK----EENPEKIIAVSGCMMQTSVAREVIEKKHKEVDIIFGTKNINSLPDLLFK 131 Query: 142 RARFGKRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G+RV+D ++ +V+D + YN K A++ I GCD FC++C+VP +RG Sbjct: 132 YLEAGERVIDVSEDNVKDDY-------VNYNSKNNFQAYVNIMTGCDNFCSYCIVPQSRG 184 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR S +++E L++NG EITLLGQNVN++ K TF +LL ++I+GL Sbjct: 185 REESRRPSHIIEEIENLVNNGYKEITLLGQNVNSYGNKS--DFNVTFPELLERCAQIEGL 242 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR+TTSHP+D+SD LI+ + D + Y HLP+QSGSD++LK MNR++ +Y + Sbjct: 243 ERLRFTTSHPKDLSDDLIRVIKENDNICNYFHLPMQSGSDKVLKDMNRKYNKEQYLEKAR 302 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R P+IAIS+D IVG+P ET++DF+ T+D+ K+G+ AF+FKYSPR T + LE Sbjct: 303 KLREEIPNIAISTDIIVGYPTETEEDFQETLDVCRKVGFDTAFTFKYSPRPKTKAAK-LE 361 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 +DE + +R L L N VG++++VL+E K K L GR+ + V Sbjct: 362 TIDEKIVQDRFDRLLDTLYPVFNEKNKEYVGKVVDVLLESESKNNKNVLTGRTDTFKLVH 421 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG I+KV+ITD T+ G LV Sbjct: 422 VEADKKLIGQIVKVKITDNTSFTISGHLV 450 >gi|120603047|ref|YP_967447.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio vulgaris DP4] gi|120563276|gb|ABM29020.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfovibrio vulgaris DP4] Length = 476 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 178/452 (39%), Positives = 259/452 (57%), Gaps = 26/452 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F ++++GCQMNV DS + +G+ +A L ++NTC +R+K +KVYS LGR Sbjct: 33 FHIETFGCQMNVNDSDWLARALMERGFSPA-PFGEARLTIVNTCSVRDKPEQKVYSLLGR 91 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--AR 144 IR + D V V GCVAQ G R P V +V G P+ L+R Sbjct: 92 IRQATGKKP----DAFVAVGGCVAQQIGSGFFSRFPQVRLVFGTDGLAMAPQALDRLVEE 147 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++ D+S ED ER +++ G + F+ I +GCD FC +C+VPYTRG + S Sbjct: 148 PDLKLSLLDFS-EDYPERDAVLGQG---AVPASVFVNIMQGCDNFCAYCIVPYTRGRQKS 203 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+ ++DE R L+D G EITLLGQNVN++ G+ G+ TF+ LL+ ++ + GL RLR Sbjct: 204 RATGTILDECRALLDRGAREITLLGQNVNSF-GQDSHGDGTTFAQLLHKVAALPGLERLR 262 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + T HP+D++ +++A G L L P LHLP+Q+GSDRILK M RR+ Y +I+D +R+ Sbjct: 263 FVTPHPKDIAPEVVEAFGTLPNLCPRLHLPLQAGSDRILKLMGRRYDMARYLRIVDDLRA 322 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDI +SSD IVGFPGET++DF TM ++ +GYA ++SF YS R GT + +++ Sbjct: 323 ARPDIVLSSDIIVGFPGETEEDFMETMGALETVGYAASYSFCYSDRPGTRAEMLPDKLSR 382 Query: 385 NVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIE----KHGKEKGKLVGRSPW-- 434 VK ERL ++L+ Q + C VG+ +EVL+E K G E GR P+ Sbjct: 383 EVKLERL----ERLQTLQNRLTERCLQDMVGKKVEVLLEGMSRKPGDEGDSWQGRDPYGN 438 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 L +V L + G + V + K +L E Sbjct: 439 LVNVALPQGSDVRGRFLPVVVAQAKKHSLLAE 470 >gi|297584113|ref|YP_003699893.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus selenitireducens MLS10] gi|297142570|gb|ADH99327.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus selenitireducens MLS10] Length = 516 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 173/448 (38%), Positives = 265/448 (59%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F +++YGCQMN +DS M + G+E + D+AD+I+LNTC IRE A KV+ + Sbjct: 72 KKFLIRTYGCQMNEHDSENMAGILLEMGFESTVNQDEADVILLNTCAIRENAENKVFGEI 131 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ +K +E L+V V GC++Q E IL++ V+++ G +RLPEL++ Sbjct: 132 GNLKVMK----RENPGLIVGVCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPELIKN 187 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K ++ +S E D E + RK ++ I GCDKFCT+C+VP+TRG Sbjct: 188 AIFSKEMIVEVWSQEGDIIENMPRA-----RKGQFQGWVNIMYGCDKFCTYCIVPFTRGK 242 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR V++E R L NG EITLLGQNVNA+ GK L +DLL + +I G+ Sbjct: 243 ERSRRPEDVIEEVRHLARNGYKEITLLGQNVNAY-GKDLLDSSYRLADLLDDIRDI-GIP 300 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP D D LI +M ++HLPVQSG++ +LK MNR++T EY + D+ Sbjct: 301 RVRFTTSHPWDFDDELIDVIAKGGNMMEHIHLPVQSGNNDVLKIMNRKYTREEYVALADK 360 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P +++D IVG+P ET++ F+ T+ LV ++ + A+++ YS R GTP + M + Sbjct: 361 IKEKIPHATLTTDIIVGYPNETEEQFQDTLSLVKEMAFDAAYTYVYSAREGTPAAAMEDD 420 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V + VK +RL L + + N+ + +EVL+E K+ L+GR+ + V Sbjct: 421 VPKEVKKDRLQRLNEVVNRHSAMSNERMRDRTVEVLVEGESKKNPDVLMGRTRTNKLVNF 480 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG+++ V+ITD K +L GELV Sbjct: 481 KAPKSVIGELVYVKITDAKSWSLNGELV 508 >gi|294102364|ref|YP_003554222.1| RNA modification enzyme, MiaB family [Aminobacterium colombiense DSM 12261] gi|293617344|gb|ADE57498.1| RNA modification enzyme, MiaB family [Aminobacterium colombiense DSM 12261] Length = 440 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 171/444 (38%), Positives = 256/444 (57%), Gaps = 11/444 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF +K YGCQMNVYD ++ G++ S ++AD+++ N C IR KA KV+S LG Sbjct: 3 RFILKVYGCQMNVYDGDKLRTALIRNGWQE-TSEEEADIVIFNGCSIRAKAEHKVWSELG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R + + K V V GC+AQ G ++ R P V +V GP+ LPE LER Sbjct: 62 RYGESWSDKKKP----FVAVTGCIAQRLGSAMMTRFPWVRLVGGPRHIGDLPEALERVMA 117 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G+RV D ED + + R A++TI GCD FCT+C+VPY RG +SR Sbjct: 118 GERVSLLD---EDSRAFVDLAVPPIERVNPWKAYVTIAHGCDNFCTYCIVPYVRGRFVSR 174 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ E R L+++GV EITLLGQNVN++ +G TFS LL ++ I GL +R+ Sbjct: 175 FPEDILVEIRGLVEDGVKEITLLGQNVNSYGQDFKNG--YTFSSLLRDVAAIDGLPLIRF 232 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TSHP+D + +++ + P ++LP+QSGSDRILK MNR++T +YR+ + IR+ Sbjct: 233 VTSHPKDFTPDIVEVMAHHPKICPSINLPIQSGSDRILKKMNRKYTLAKYRETVSVIRNA 292 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P++ ++SD IVGFPGET++DF+A++ + + Y + YSPR GT S M +Q+D++ Sbjct: 293 LPEVGLTSDLIVGFPGETEEDFQASVAALHEFRYDLVHTAAYSPREGTAASTMEDQIDQD 352 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSKN 444 VK +RL + E + N VG+ ++LI+ + LV GR+P + V++ Sbjct: 353 VKMKRLNTVNAVQSEIALQINRGLVGKRYKILIDDWAPKGESLVQGRTPGDKVVIMEGTE 412 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG V IT + L+GE++ Sbjct: 413 EFIGRFALVSITSAENWCLHGEVI 436 >gi|319900623|ref|YP_004160351.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides helcogenes P 36-108] gi|319415654|gb|ADV42765.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides helcogenes P 36-108] Length = 459 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 173/451 (38%), Positives = 269/451 (59%), Gaps = 20/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD + +NTC IR+ A +K+ + L Sbjct: 18 KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK K+ L+V V GC+A+ ++++ V++VVGP Y LPEL+ Sbjct: 78 EFFHSLK----KKKRHLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIASVE 132 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + DG TF LL ++E VR Sbjct: 188 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPDGGVVTFPILLRMVAEAAQGVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ D+ + ++HLPVQSGS RILK MNRR+T Y + + I Sbjct: 248 IRFTTSHPKDMSDETLQVIADMPNVCKHIHLPVQSGSSRILKLMNRRYTREWYLERVAAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD +S+D GF ET++D + ++ L+++ GY AF FKYS R GT S L + Sbjct: 308 RRIIPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDD 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N CVG++ EVL+E K + +L GR+ + Sbjct: 368 VPEEVKIRRLNEIIALQNRLSAEA---NARCVGRMYEVLVEGVSKRSRNQLFGRTEQNRV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + H IGD + VR+T+ +TL GE V Sbjct: 425 VVFDRGTHRIGDFVTVRVTESSSATLKGEEV 455 >gi|330686356|gb|EGG97959.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus epidermidis VCU121] Length = 514 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 171/446 (38%), Positives = 265/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ M + + GY ++ AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVMAGILEALGYSATTDINTADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D L+ V GC++Q E +IL+ V+++ G +RLPE+LE A Sbjct: 130 LKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V G+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK ++G DLL +S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYQEITLLGQNVNSY-GKDIEGLDYGLGDLLEDISKID-IPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I+ + ++P++HLPVQSG++ +LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDRMIEVIANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVSRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P+IA+++D IVG+P ET++ F T+ L D++G+ A+++ YS R GTP + M + V Sbjct: 359 EAIPNIALTTDIIVGYPNETEEQFEDTLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 +VK ERL L KK+ E +I+ VL E K+ L G + + V + Sbjct: 419 TDVKKERLQRLNKKVGEYSQKAMSQYENEIVTVLCEGSSKKDDTVLAGYTSKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 +G ++ V+I + K +L G + Sbjct: 479 PKEMVGKLVDVKIDEAKQYSLNGTFI 504 >gi|86143888|ref|ZP_01062256.1| hypothetical protein MED217_03540 [Leeuwenhoekiella blandensis MED217] gi|85829595|gb|EAQ48058.1| hypothetical protein MED217_03540 [Leeuwenhoekiella blandensis MED217] Length = 481 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 180/464 (38%), Positives = 262/464 (56%), Gaps = 22/464 (4%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 Q ++ F++SYGCQMN DS + + +GY ++DADL+++NTC IR+KA + Sbjct: 19 QAANSKKLFIESYGCQMNFSDSEIVASILAKEGYNTTQQLEDADLVLVNTCSIRDKAEQT 78 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 V L + +K K+ + V V GC+A+ + L IV++VVGP Y LP L Sbjct: 79 VRKRLEKYNAVK----KDNPTMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNL 134 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 L G+ ++ S E+ + ++ V N GVTAF++I GCD CTFCVVP+TR Sbjct: 135 LGEVEEGRDAINVILSKEETYGDIAPVRLQSN---GVTAFVSITRGCDNMCTFCVVPFTR 191 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT--------- 246 G E SR +V+E L G E+TLLGQNV++ W G GL D EK + Sbjct: 192 GRERSRDPQSIVEEVNDLAAKGFKEVTLLGQNVDSYLWYGGGLKKDFEKASDMAKATAVN 251 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F+ LL ++E + +R+R++TS+P+DM+ +I+ + Y+HLPVQSGSDRILK M Sbjct: 252 FAGLLSLVAEAQPKMRIRFSTSNPQDMTLDVIRTMAKYPNICKYIHLPVQSGSDRILKEM 311 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 NR HT EY ++ID IR + PD AIS D I GFP ET++D + T+ L++ + Y F F Sbjct: 312 NRLHTRQEYFELIDNIREIMPDCAISQDMITGFPTETEEDHQDTLSLMEYVKYDFGFMFA 371 Query: 367 YSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 YS R GT + LE + +VK RL + +E + VG+ +EVLIEK K+ Sbjct: 372 YSERPGTLAARKLEDDIPLDVKKRRLAEVIALQQEHSLYNTQKQVGKTVEVLIEKASKKS 431 Query: 426 -GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + GR+ VV +++ +GD + V I D +TL G+ V Sbjct: 432 DAEWAGRNSQNTVVVFPKEHYKVGDFVNVEILDCTSTTLLGKAV 475 >gi|229890688|sp|A1VF04|MIAB_DESVV RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 449 Score = 305 bits (782), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 178/452 (39%), Positives = 259/452 (57%), Gaps = 26/452 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F ++++GCQMNV DS + +G+ +A L ++NTC +R+K +KVYS LGR Sbjct: 6 FHIETFGCQMNVNDSDWLARALMERGFSPA-PFGEARLTIVNTCSVRDKPEQKVYSLLGR 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--AR 144 IR + D V V GCVAQ G R P V +V G P+ L+R Sbjct: 65 IRQATGKKP----DAFVAVGGCVAQQIGSGFFSRFPQVRLVFGTDGLAMAPQALDRLVEE 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++ D+S ED ER +++ G + F+ I +GCD FC +C+VPYTRG + S Sbjct: 121 PDLKLSLLDFS-EDYPERDAVLGQG---AVPASVFVNIMQGCDNFCAYCIVPYTRGRQKS 176 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+ ++DE R L+D G EITLLGQNVN++ G+ G+ TF+ LL+ ++ + GL RLR Sbjct: 177 RATGTILDECRALLDRGAREITLLGQNVNSF-GQDSHGDGTTFAQLLHKVAALPGLERLR 235 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + T HP+D++ +++A G L L P LHLP+Q+GSDRILK M RR+ Y +I+D +R+ Sbjct: 236 FVTPHPKDIAPEVVEAFGTLPNLCPRLHLPLQAGSDRILKLMGRRYDMARYLRIVDDLRA 295 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDI +SSD IVGFPGET++DF TM ++ +GYA ++SF YS R GT + +++ Sbjct: 296 ARPDIVLSSDIIVGFPGETEEDFMETMGALETVGYAASYSFCYSDRPGTRAEMLPDKLSR 355 Query: 385 NVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIE----KHGKEKGKLVGRSPW-- 434 VK ERL ++L+ Q + C VG+ +EVL+E K G E GR P+ Sbjct: 356 EVKLERL----ERLQTLQNRLTERCLQDMVGKKVEVLLEGMSRKPGDEGDSWQGRDPYGN 411 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 L +V L + G + V + K +L E Sbjct: 412 LVNVALPQGSDVRGRFLPVVVAQAKKHSLLAE 443 >gi|167763971|ref|ZP_02436098.1| hypothetical protein BACSTE_02354 [Bacteroides stercoris ATCC 43183] gi|167698087|gb|EDS14666.1| hypothetical protein BACSTE_02354 [Bacteroides stercoris ATCC 43183] Length = 455 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 170/451 (37%), Positives = 272/451 (60%), Gaps = 20/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY +++++AD + +NTC IR+ A +K+ + L Sbjct: 18 RKLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK K+ +L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 78 EFFHSLK----KKKKNLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLSLPDLIAAVE 132 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 133 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + DGE TF LL +++E VR Sbjct: 188 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKADGEVVTFPMLLRTVAESAPGVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ ++ + ++HLPVQSGS RILK MNR++T Y + +D I Sbjct: 248 IRFTTSHPKDMSDETLQVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVDAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + D +S+D GF ET++D R ++ L+++ GY AF FKYS R GT S L + Sbjct: 308 RRIISDCGLSTDIFSGFHSETEEDHRLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDD 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N C+G+ EVL+E K + +L GR+ + Sbjct: 368 VPEEVKIRRLNEIIALQNRLSAEA---NARCMGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + H +GD + V+IT+ +TL GE V Sbjct: 425 VVFDRGTHRVGDFVNVKITESSSATLKGEEV 455 >gi|213964685|ref|ZP_03392885.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium amycolatum SK46] gi|213952878|gb|EEB64260.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium amycolatum SK46] Length = 515 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 163/454 (35%), Positives = 266/454 (58%), Gaps = 31/454 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ + V+++GCQMNV+DS R+ + GY ++ DL+V NTC +RE A ++Y Sbjct: 14 PRTYEVRTFGCQMNVHDSERLSGLLEENGYVAAAEGENPDLVVFNTCAVRENADNRLYGT 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+++ +K++ + + V GC+AQ + + +++++P V+VV G LP LLERA Sbjct: 74 LGQLKPVKDAHP----GMQIAVGGCLAQKDKDVVVKKAPWVDVVFGTHNLGSLPALLERA 129 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R + ++D E V R+ +++I GC+ CTFC+VP RG E Sbjct: 130 AHNDRA---EVEIKDALEEFPSVLPA-KRESTYAGWVSISVGCNNTCTFCIVPSLRGKER 185 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKG 259 R +++ E + L++ GV ++TLLGQNVNA+ ++ ++ FS LL + +I+G Sbjct: 186 DRRPGEILAEVQALVEQGVTDVTLLGQNVNAYGVNFADPDMERDRSAFSKLLRACGQIEG 245 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+T+ HP + +D +I A + ++ LH+P+QSGSDR+LK M R + ++ I+ Sbjct: 246 LERVRFTSPHPAEFTDDVIDAMAETPNVVHQLHMPLQSGSDRVLKDMRRSYRTKKFLGIL 305 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 D++R PD AI++D IVGFPGET++DF+AT+D+V+K ++ AF+F+YSPR GTP + M Sbjct: 306 DKVREKMPDAAITTDIIVGFPGETEEDFQATLDVVEKARFSSAFTFQYSPRPGTPAATMP 365 Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----------- 425 +QV V E RLL LQ+++ E++ N VG+ +E+L+ + K Sbjct: 366 DQVPPEVVKERYGRLLALQERISEEE---NAKLVGREVELLVSQSDGRKNAETHRMSGRS 422 Query: 426 --GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457 G+LV SP + + GD + VR+TD Sbjct: 423 RDGRLVHFSPSESEPGVVDRKIRPGDYVTVRVTD 456 >gi|186681269|ref|YP_001864465.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Nostoc punctiforme PCC 73102] gi|229890579|sp|B2IT24|MIAB_NOSP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|186463721|gb|ACC79522.1| RNA modification enzyme, MiaB family [Nostoc punctiforme PCC 73102] Length = 454 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 180/454 (39%), Positives = 273/454 (60%), Gaps = 23/454 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + + ++GCQMN DS RM + G+E ++AD+I+ NTC IR+ A +KVYS+L Sbjct: 6 RHYHITTFGCQMNKADSERMAGVLEDMGFEWSEDPNNADVILYNTCTIRDNAEQKVYSYL 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + R + DL ++VAGCVAQ EGE +LRR P +++V+GPQ RL +LLE Sbjct: 66 GR----QAKRKHDQPDLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVF 121 Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +VV T+ + +ED + R VTA++ + GC++ CT+CVVP RGIE Sbjct: 122 DGNQVVATESVHIIEDITQP--------RRDSKVTAWVNVIYGCNERCTYCVVPNVRGIE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256 SR+ S + E +L G EITLLGQN++A+ G+ L G F+DLLY + + Sbjct: 174 QSRTPSAIRAEMEELGRQGYKEITLLGQNIDAY-GRDLPGTTPEGRHLHNFTDLLYYVHD 232 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + G+ RLR+ TSHPR ++ LIKA +L + + H+P QSG + +LK+M R +T +YR Sbjct: 233 VPGIERLRFATSHPRYFTERLIKACAELPKVCKHFHIPFQSGDNELLKAMARGYTHEKYR 292 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +IID IR PD +IS+D IVGFPGET+ F T+ LV+ IG+ + YSPR GTP + Sbjct: 293 RIIDTIRRYMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDMLNTAAYSPRPGTPAA 352 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWL 435 Q+ E VK++RL L + + G+I EVL+E ++ K++ +++GR+ Sbjct: 353 LWDNQLSEEVKSDRLQRLNHLGNLKVAERSQRYFGRIEEVLVEDQNPKDQTQVMGRTDGN 412 Query: 436 QSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468 + + + G ++KV+IT+V+ +L G+ V Sbjct: 413 RLTFFSGDIKELKGQLVKVKITEVRPFSLTGQPV 446 >gi|260206040|ref|ZP_05773531.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium tuberculosis K85] gi|289575430|ref|ZP_06455657.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis K85] gi|289539861|gb|EFD44439.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis K85] Length = 512 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 171/462 (37%), Positives = 268/462 (58%), Gaps = 27/462 (5%) Query: 23 VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P R + V++YGCQMNV+DS R+ + + GY R +AD++V NTC +RE A ++Y Sbjct: 22 APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 81 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L + R + D+ + V GC+AQ + + +LRR+P V+VV G LP LLE Sbjct: 82 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 137 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 RAR K V+ +++ L +R+ A+++I GC+ CTFC+VP RG Sbjct: 138 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 192 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256 E+ RS + ++ E R L+++GV E+TLLGQNVNA+ L + F++LL + + Sbjct: 193 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 252 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I GL R+R+T+ HP + +D +I+A + P LH+P+QSGSDRIL++M R + A Y Sbjct: 253 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 312 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 II+R+R+ P AI++D IVGFP ET++DF AT+D+V + +A AF+F+YS R GTP + Sbjct: 313 GIIERVRAAIPHAAITTDLIVGFPWETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 372 Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLV 429 + Q+ + V + ERL+ LQ+++ + N A VGQ +EVL+ K ++ Sbjct: 373 QLDGQLPKAVVQERYERLIALQEQI---SLEANRALVGQAVEVLVATGEGRKDTVTARMS 429 Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 GR+ + V + + GD+I ++T+ L + V Sbjct: 430 GRARDGRLVHFTAGQPRVRPGDVITTKVTEAAPHHLIADAGV 471 >gi|239636980|ref|ZP_04677974.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri L37603] gi|239597330|gb|EEQ79833.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri L37603] Length = 514 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 171/446 (38%), Positives = 264/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ M + + GY ++ AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVMAGILEALGYSATTDINTADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D L+ V GC++Q E +IL+ V+++ G +RLPE+LE A Sbjct: 130 LKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V G+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK ++G DLL +S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYQEITLLGQNVNSY-GKDIEGLDYGLGDLLEDISKID-IPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I+ + ++P++HLPVQSG++ +LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDRMIEVIANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVSRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P+IA+++D IVG+P ET++ F T+ L D++G+ A+++ YS R GTP + M + V Sbjct: 359 EAIPNIALTTDIIVGYPNETEEQFEDTLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 VK ERL L KK+ E +I+ VL E K+ L G + + V + Sbjct: 419 TEVKKERLQRLNKKVGEYSQKAMSQYENEIVTVLCEGSSKKDDSVLAGYTSKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 +G ++ V+I + K +L G + Sbjct: 479 PKEMVGKLVDVKIDEAKQYSLNGTFI 504 >gi|225163478|ref|ZP_03725792.1| 2-alkenal reductase [Opitutaceae bacterium TAV2] gi|224801895|gb|EEG20177.1| 2-alkenal reductase [Opitutaceae bacterium TAV2] Length = 494 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 177/474 (37%), Positives = 262/474 (55%), Gaps = 39/474 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++K+YGCQMN DS + M ++GY VN+ DD D+++LNTC +R+ A +K LG Sbjct: 3 RVYIKTYGCQMNERDSNAVAAMLRARGYRIVNTEDDCDIMLLNTCSVRDAAEQKA---LG 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + + + R K D ++ + GC+AQ G EIL + P V++++G Q ++++P LE R Sbjct: 60 KASYM-SQRKKRNPDFVLGILGCMAQNRGAEILEKLPDVDLIIGTQKFHQVPGYLENLRA 118 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRG------------------------------ 175 + D V + ++ G N R Sbjct: 119 AR---DAGLPVGETIIDIAEEPGSQNTIRDHYFPPAPPASSAISAASDNSPLPPPPPAPQ 175 Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 VTA+++IQ+GC+ C FC+VP TRG E SR + +V E R L D G+ EITLLGQ V ++ Sbjct: 176 VTAYVSIQQGCNMDCAFCIVPKTRGDERSRPMDDIVAECRALADRGIREITLLGQIVTSY 235 Query: 236 --RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293 R G F L+ + I+G+ R+R+T+ HPR L+ A+ L L Y+HL Sbjct: 236 GRRDYEHTGGITPFVQLIEKVHAIEGIDRIRFTSPHPRGFKQDLVDAYARLPKLCEYVHL 295 Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 P+QSGSDRIL++M+R ++ YRQI+ +R+ RPD+ S+D IVGFPGETD +F T L Sbjct: 296 PMQSGSDRILRAMHRPYSRDRYRQIVQSLRAARPDMYFSTDIIVGFPGETDAEFEDTRTL 355 Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413 ++ Y A+ FKYS R GTP + M +Q+ E+VK R L + LR N A +G I Sbjct: 356 FEECNYDMAYIFKYSVRTGTPAAVMGDQIPEDVKEHRNQVLLEILRRNSERRNAALLGTI 415 Query: 414 IEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 EVL+E K + GR+ + + ++ IG ++ +RI ISTLYGEL Sbjct: 416 EEVLVEGPDKTGQRYTGRTRGNRVTIFDASPRLIGQLVPLRIQRASISTLYGEL 469 >gi|327398199|ref|YP_004339068.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Hippea maritima DSM 10411] gi|327180828|gb|AEA33009.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Hippea maritima DSM 10411] Length = 421 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 178/456 (39%), Positives = 271/456 (59%), Gaps = 51/456 (11%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F++K++GCQMN DS ++ + G++ + + A+L+++N+C +REKA K+YS +GR Sbjct: 3 FYIKTFGCQMNERDSEKVIGILTQNGWKMTDDIKSANLVIVNSCAVREKAENKIYSEIGR 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT---YYRLPELLERA 143 +R KN + VV GCVAQ E++ R + ++VVG T +Y++ + ++ Sbjct: 63 LR-FKNK------NATVVAMGCVAQINYEKLSR---VADIVVGTNTIDEFYKIAKTPQKG 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 F K ER+ D + GV+AF+ I GC+ FCT+C+VPYTRG EI Sbjct: 113 AFIK-------------ERMDNPDYIFPHVEGVSAFVDIMYGCNNFCTYCIVPYTRGREI 159 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++E ++L D G E+ LLGQNVN++ GKGL+ F DLLY +++I GL R+ Sbjct: 160 SRKKEAIIEEIKRLTDKGTKEVMLLGQNVNSY-GKGLE---YNFVDLLYEVNKIDGLKRI 215 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP+D S LI A DLD + ++HLP+QSGS++ILK M R +T +Y + + + Sbjct: 216 RFTTSHPKDFSKELIDAMRDLDKVCEHIHLPLQSGSNKILKLMRRGYTKEDYLEKVMLFK 275 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P +I++D IVGFP ET++DF T+D++ + Y +FSFKYS R T S M Q+D Sbjct: 276 ETIPQGSITTDIIVGFPQETEEDFLETIDVLKTVEYDTSFSFKYSKRPLTKASQMKGQID 335 Query: 384 ENVKAERLLCL--------QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 E K +RL L QKKL+ + G+I+EVL+E K++G L GR+ Sbjct: 336 EKTKLKRLNYLQELQAQITQKKLKNYE--------GKIVEVLVEGKAKKEGMLSGRNR-- 385 Query: 436 QSVVLN---SKNHNIGDIIKVRITDVKISTLYGELV 468 Q++V+N N GD ++V+I +L GEL+ Sbjct: 386 QNIVVNFNFRDNIKAGDCLRVKIIKALKHSLVGELI 421 >gi|220909156|ref|YP_002484467.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp. PCC 7425] gi|219865767|gb|ACL46106.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7425] Length = 446 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 177/455 (38%), Positives = 277/455 (60%), Gaps = 23/455 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R+ + ++GCQMN DS RM + G+ + + ADL++ NTC IR+ A +KVYS+L Sbjct: 5 RRYHITTFGCQMNKADSERMAGVLEDLGFIWEENPEVADLVLYNTCTIRDNAEQKVYSYL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G+ + R ++ DL +VVAGCVAQ EGE++LRR P +++V+GPQ RL ELLE+ Sbjct: 65 GK----QARRKRDRPDLTLVVAGCVAQQEGEQLLRRVPELDLVMGPQYANRLGELLEQVF 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +VV T E L IV+ +R VTA++ + GC++ CT+CVVP RG+E Sbjct: 121 NGNQVVAT--------EPLQIVEDITKPRRDSSVTAWVNVIYGCNERCTYCVVPNVRGVE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256 SR+ + + E +L G E+TLLGQN++A+ G+ L G + T +DLLY + + Sbjct: 173 QSRTPAAIRAEIEELARQGYKEVTLLGQNIDAY-GRDLPGVTPEGRHQHTLTDLLYYIHD 231 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + G+ R+R+ TSHPR ++ LI+A +L + + H+P QSG + ILK+M R +T +Y Sbjct: 232 VPGIERIRFATSHPRYFTERLIRACAELPKVCEHFHIPFQSGDNDILKAMARGYTREKYL 291 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 II++IRS PD +IS+D IVGFPGET+ F T++LV+ +G+ Q + YSPR GTP + Sbjct: 292 GIIEKIRSYMPDASISADAIVGFPGETEAQFINTLELVETVGFDQLNTAAYSPRPGTPAA 351 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWL 435 Q+ E VK++RL L + ++ +G+I VL+E ++ K+ +++GR+ Sbjct: 352 QWQNQLPEEVKSDRLQRLNHLVAQKAADRTARYLGRIETVLVEDQNPKDPSQVMGRTQGN 411 Query: 436 QSVVLNSKNHNI-GDIIKVRITDVKISTLYGELVV 469 + + G +I V+IT V+ +L GE ++ Sbjct: 412 RLTFFAGDMTQLRGQLIPVKITTVRPFSLSGEPLI 446 >gi|322421071|ref|YP_004200294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter sp. M18] gi|320127458|gb|ADW15018.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacter sp. M18] Length = 441 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 170/445 (38%), Positives = 269/445 (60%), Gaps = 11/445 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++++GCQMNV DS ++ + GY+R +ADL++LNTC IR A ++VY L Sbjct: 5 KKLYLETFGCQMNVSDSEKIVTLMKGIGYQRTADPVEADLVLLNTCSIRATAEQRVYGHL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G+ +++K K+ L++ V GCVAQ EGE +L+++P VN+V G + L +++ A Sbjct: 65 GKFKSMK----KQKPGLIIGVGGCVAQQEGERLLKKAPFVNLVFGTHNLHLLQKMVSGAE 120 Query: 145 FGKRVVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK+ V TD+ E +F+ + + GV+ F+T+ +GCD FC +C+VP+ RG EI Sbjct: 121 EGKQSVATDFLDDEKRFDLFPHAES----EGGVSRFVTVMQGCDNFCAYCIVPHVRGREI 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SRS ++VV+E L GV E+TLLGQNVN++ + + + F DLL ++ + G+ RL Sbjct: 177 SRSAARVVEEVAALAAAGVTEVTLLGQNVNSYGFR--EAGEPDFPDLLRMVARVDGIERL 234 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP+D+S LI+ + L P++HLP QSGSD++LK MNR +T +Y + +R Sbjct: 235 RFTTSHPKDISPRLIECFAGIPQLAPHIHLPAQSGSDQVLKKMNRGYTRADYLGKVRALR 294 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P+I + D IVGFPGE F TM+L++++ YA FSF YS R GT + ++V Sbjct: 295 DACPEIQFTGDMIVGFPGEDGAAFEQTMELLEEVQYADLFSFIYSARPGTKAAEFPDEVK 354 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 K RL LQ ++ ++ N++ VG + +VL+E L GR+ + V+ Sbjct: 355 RAEKQARLERLQAAQKKVTLARNESFVGGVQQVLVEGLSTSGDSLFGRTGGNRGTVMAGD 414 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 G I++VRIT+ + L GE++ Sbjct: 415 PSLAGRIVEVRITEGLQTLLKGEVL 439 >gi|254391805|ref|ZP_05007000.1| methylase [Streptomyces clavuligerus ATCC 27064] gi|294815497|ref|ZP_06774140.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB [Streptomyces clavuligerus ATCC 27064] gi|197705487|gb|EDY51299.1| methylase [Streptomyces clavuligerus ATCC 27064] gi|294328096|gb|EFG09739.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB [Streptomyces clavuligerus ATCC 27064] Length = 506 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 182/465 (39%), Positives = 268/465 (57%), Gaps = 31/465 (6%) Query: 15 SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHI 72 SQ VD V + + +++YGCQMNV+DS R+ + GY R S DAD++V NTC + Sbjct: 7 SQAVD---VQRSYEIRTYGCQMNVHDSERLSGLLEEAGYVRAAEGSDGDADVVVFNTCAV 63 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 RE A K+Y LGR+ +K R + + V GC+AQ + + I+ R+P V+VV G Sbjct: 64 RENADNKLYGNLGRLAPMKTRRP----GMQIAVGGCLAQKDRDTIVSRAPWVDVVFGTHN 119 Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 +LP LLERAR + V+ S+E L R+ A+++I GC+ CT Sbjct: 120 IGKLPVLLERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCT 174 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDL 250 FC+VP RG E R ++ E L+ GV EITLLGQNVNA+ G D G++ FS L Sbjct: 175 FCIVPALRGKEKDRRPGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKL 231 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L + I+GL R+R+T+ HPRD +D +I A + +MP LH+P+QSGSD +L++M R + Sbjct: 232 LRACGRIEGLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDAVLRAMRRSY 291 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + IID++R P AIS+D IVGFPGET++DF T+ V + +A AF+F+YS R Sbjct: 292 RQERFLGIIDKVREAIPHAAISTDIIVGFPGETEEDFEQTLHTVREARFANAFTFQYSKR 351 Query: 371 LGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG 426 GTP + M Q+ + V + ERL+ LQ+++ + N VG+++EV++ E G++ G Sbjct: 352 PGTPAATMEGQLPKEVVQARYERLVVLQEEISWAE---NKKQVGRVLEVMVAEGEGRKDG 408 Query: 427 ---KLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 +L GR+P + V + GD++ V IT L E Sbjct: 409 ATQRLSGRAPDNRLVHFTKPEEEVRPGDVVTVEITYAAPHHLLAE 453 >gi|328885508|emb|CCA58747.1| tRNA-i(6)A37 methylthiotransferase [Streptomyces venezuelae ATCC 10712] Length = 509 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 176/452 (38%), Positives = 267/452 (59%), Gaps = 26/452 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++YGCQMNV+DS R+ + GY + S DAD++V NTC +RE A K+Y L Sbjct: 19 YEIRTYGCQMNVHDSERLSGLLEEAGYVKAPKGSDGDADVVVFNTCAVRENADNKLYGNL 78 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+ +K +R + + V GC+AQ + E I+ ++P V+VV G +LP LLERAR Sbjct: 79 GRLAPMKTTRP----GMQIAVGGCLAQKDRETIVSKAPWVDVVFGTHNIGKLPVLLERAR 134 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + ++ S+E L R+ A+++I GC+ CTFC+VP RG E Sbjct: 135 VQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEE 189 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 R ++ E L+ GV EITLLGQNVNA+ G L G++ FS LL + +I+GL R+ Sbjct: 190 DRRPGDILAEIEALVAEGVSEITLLGQNVNAY-GSDL-GDREAFSKLLRACGQIEGLERV 247 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HPRD +D +I A + +MP LH+P+QSGSD IL++M R + + II+++R Sbjct: 248 RFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDSILRAMRRSYRQERFLGIIEKVR 307 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P AIS+D IVGFPGET++DF TM V + +A AF+F+YS R GTP ++M Q+ Sbjct: 308 AAIPHAAISTDIIVGFPGETEEDFEQTMHTVREARFANAFTFQYSKRPGTPAADMEGQIP 367 Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQ 436 + V E RL+ LQ+++ ++ N VG+ +EV++ E G++ G +L GR+P + Sbjct: 368 KEVVQERYMRLVALQEEISWEE---NKKQVGRTLEVMVAEGEGRKDGATDRLSGRAPDNR 424 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 V + ++ GD++ V IT L E Sbjct: 425 LVHFTKPDEDVRPGDVVTVEITYAAPHHLLAE 456 >gi|147677673|ref|YP_001211888.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pelotomaculum thermopropionicum SI] gi|229890589|sp|A5D2K1|MIAB_PELTS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|146273770|dbj|BAF59519.1| 2-methylthioadenine synthetase [Pelotomaculum thermopropionicum SI] Length = 448 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 179/449 (39%), Positives = 270/449 (60%), Gaps = 18/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + +GCQMN +DS + + S GY + + +D D+I++NTC +R+ A KV+S L Sbjct: 2 KKYRIIVFGCQMNEHDSEVLAGILESMGYCQAGNSEDPDIILINTCCVRKTAENKVFSLL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 GR+R K + +L++ V GC+ Q EG E I + P V+++ G ++LPEL+ + Sbjct: 62 GRLRRQK----AQNPNLIIGVCGCMPQQEGMAERIKQLFPHVDLIFGTHNVHQLPELIGK 117 Query: 143 ARFGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G++ V Y E + E L + RK GV A++TI GC+ FCT+C+VPY R Sbjct: 118 VIEGQKQVLEIWPGYGGELR-EELPV-----KRKEGVRAWVTIMYGCNNFCTYCIVPYVR 171 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SRS V +E +L G E+ LLGQNVN++ GK L G K F+ LL SL I G Sbjct: 172 GREKSRSPEAVYEEVARLAGEGFKEVILLGQNVNSY-GKDL-GVKTDFASLLESLENIDG 229 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+RY TSHPRD S L++A + + HLPVQ+GS+RILK MNR +T EY +I Sbjct: 230 IDRIRYMTSHPRDFSLRLVEAIAASKKVCEHFHLPVQAGSNRILKKMNRGYTREEYVDLI 289 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 I+S+ P +++D +VGFPGETD+DF T+DLV +I + A++F Y+ R GTP + M Sbjct: 290 RYIKSLIPHATVTTDIMVGFPGETDEDFNDTLDLVREIRFDSAYTFVYNIRPGTPAAEMP 349 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSV 438 +QV ENVK ER+ L K + + N+ VGQ EVL+E + + G + GR+ ++V Sbjct: 350 DQVAENVKKERIQALIKLQNKISLERNEEEVGQTQEVLVEGEKDRGSGFIYGRNRGNKTV 409 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467 + + +G ++ V +T +++ L G L Sbjct: 410 IFSGDPSLVGKVVPVTVTGARLAHLTGIL 438 >gi|298386977|ref|ZP_06996531.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 1_1_14] gi|298260127|gb|EFI02997.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 1_1_14] Length = 455 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 170/451 (37%), Positives = 268/451 (59%), Gaps = 20/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD + +NTC IR+ A +K+ + L Sbjct: 18 KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK K+ L+V V GC+A+ ++++ V++VVGP Y LPEL+ Sbjct: 78 EFFHSLK----KKKKALIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIAAVE 132 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ D S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 133 AGEKAINVDLSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + GE TF LL +++E VR Sbjct: 188 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPTGEVVTFPMLLRTVAEAAPGVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++T Y + I Sbjct: 248 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 + + PD +++D GF ET++D + ++ L+++ GY AF FKYS R GT S LE Sbjct: 308 KRIIPDCGLTTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLEDN 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E+VK RL + LQ +L + N C+G+ EVL+E K + +L GR+ + Sbjct: 368 VPEDVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + H IGD + VR+T+ +TL GE V Sbjct: 425 VVFDRGTHRIGDFVNVRVTEASSATLKGEEV 455 >gi|253316429|ref|ZP_04839642.1| hypothetical protein SauraC_09846 [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 514 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 171/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ + + + GY+ ++ AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D+L+ V GC++Q E +IL+ V+++ G + LPE+LE A Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK L + DLL ++S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDREYDLGDLLQAISKI-AIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I + ++P++HLPVQSG++ +LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P E+++ F T+ L D++G+ A+++ YS R GTP + M + V Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 NVK ERL L KK+ GQ + VL E K+ + L G + + V + Sbjct: 419 LNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG +++VRI + K +L G V Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504 >gi|160888105|ref|ZP_02069108.1| hypothetical protein BACUNI_00513 [Bacteroides uniformis ATCC 8492] gi|156862416|gb|EDO55847.1| hypothetical protein BACUNI_00513 [Bacteroides uniformis ATCC 8492] Length = 457 Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 170/452 (37%), Positives = 269/452 (59%), Gaps = 20/452 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY +++++AD + +NTC IR+ A +K+ + L Sbjct: 18 KKLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK K+ L+V V GC+A+ ++++ V++VVGP Y LPEL+ Sbjct: 78 EFFHSLK----KKKRGLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIASVE 132 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 133 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + DGE TF LL +++E VR Sbjct: 188 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPDGETITFPMLLRTVAEAAPGVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ D+ + ++HLPVQSGS RILK MNR++ Y + I Sbjct: 248 IRFTTSHPKDMSDETLQVIADMPNVCKHIHLPVQSGSSRILKLMNRKYDREWYMDRVAAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD +S+D GF ET++D + ++ L+++ GY AF FKYS R GT S L + Sbjct: 308 RRIIPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDSAFMFKYSERPGTHASKYLPDD 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N CVG+ EVL+E K + +L GR+ + Sbjct: 368 VPEEVKIRRLNEIIALQNRLSAEA---NARCVGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 VV + H +GD + V++T+ +TL GE V Sbjct: 425 VVFDRGTHRVGDFVMVKVTESSSATLKGEEVA 456 >gi|254386091|ref|ZP_05001405.1| methylase of isopentenylated A37 derivatives in tRNA [Streptomyces sp. Mg1] gi|194344950|gb|EDX25916.1| methylase of isopentenylated A37 derivatives in tRNA [Streptomyces sp. Mg1] Length = 506 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 178/452 (39%), Positives = 266/452 (58%), Gaps = 26/452 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84 + V++YGCQMNV+DS R+ + GY R S DAD++V NTC +RE A K+Y L Sbjct: 17 YEVRTYGCQMNVHDSERLSGLLEGAGYTRAPEGSDGDADVVVFNTCAVRENADNKLYGNL 76 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+ +K R + + V GC+AQ + + I++R+P V+VV G +LP LLERAR Sbjct: 77 GRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 132 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + V+ S+E L R+ A+++I GC+ CTFC+VP RG E Sbjct: 133 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEE 187 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 R ++ E L+ GV EITLLGQNVNA+ G L G++ FS LL + I+GL R+ Sbjct: 188 DRRPGDILAEVEALVAEGVSEITLLGQNVNAY-GSDL-GDREAFSKLLRACGGIEGLERV 245 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HPRD +D +I A + +MP LH+P+QSGSD IL++M R + + II+++R Sbjct: 246 RFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDPILRAMRRSYRQERFLGIIEKVR 305 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P AIS+D IVGFPGET++DF+ TM V + +A AF+F+YS R GTP ++M Q+ Sbjct: 306 AAIPHAAISTDIIVGFPGETEEDFQQTMHTVREARFANAFTFQYSKRPGTPAADMEGQIP 365 Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQ 436 + V + RL+ LQ+++ ++ N VG+ +EV++ E G++ G +L GR+P + Sbjct: 366 KEVVQDRYMRLVALQEEISWEE---NKKQVGRTLEVMVAEGEGRKDGATDRLSGRAPDNR 422 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 V + + GD++ V IT L E Sbjct: 423 LVHFTKPDEEVRPGDVVTVDITYAAPHHLLAE 454 >gi|126663275|ref|ZP_01734273.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BAL38] gi|126624933|gb|EAZ95623.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BAL38] Length = 482 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 177/459 (38%), Positives = 259/459 (56%), Gaps = 22/459 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGCQMN DS + + + GY +++DADL+++NTC IR+KA + + L Sbjct: 24 KKLFIESYGCQMNFSDSEIVASILYENGYNTTQNLEDADLVLVNTCSIRDKAEQTIRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K K + V V GC+A+ + L IV++VVGP Y LP LL Sbjct: 84 EKYNAVK----KINPTMKVGVLGCMAERLKSQFLEEEKIVDMVVGPDAYKDLPNLLAEVE 139 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ ++ S E+ + +S V N GV AF++I GCD CTFCVVP+TRG E S Sbjct: 140 EGRDAINVILSKEETYGDISPVRLNSN---GVNAFVSITRGCDNMCTFCVVPFTRGRERS 196 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251 R ++DE + L D G E+TLLGQNV++ W G GL D +K T F+ LL Sbjct: 197 REPQSIIDEIQDLYDRGFKEVTLLGQNVDSYLWYGGGLKKDYDKATEIQKATAMDFAQLL 256 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 + + +R R++TS+P+DM + ++ + Y+HLPVQSGS RILK MNR+HT Sbjct: 257 DKCATLFPKMRFRFSTSNPQDMHEEVLHVIAKHHNICNYIHLPVQSGSTRILKEMNRQHT 316 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY +ID+I S+ PDI++S D I GFP ET++D + T+ L++ + Y F F YS R Sbjct: 317 REEYMALIDKIYSIIPDISLSQDMIAGFPTETEEDHQDTLSLMEYVKYDFGFMFAYSERP 376 Query: 372 GTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLV 429 GT + +E V E VK RL + ++ + +GQ +EVLIEK K Sbjct: 377 GTLAARKMEDDVPEEVKKRRLTEIVDLQQKHGLERTQRFIGQEVEVLIEKESKRSDAHWS 436 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 GR+ VV +N+ +G+ + V+ITD +TL GE V Sbjct: 437 GRNSQNTVVVFPKENYKVGEFVMVKITDCTAATLIGEAV 475 >gi|239982707|ref|ZP_04705231.1| hypothetical protein SalbJ_24974 [Streptomyces albus J1074] Length = 480 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 174/454 (38%), Positives = 266/454 (58%), Gaps = 29/454 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEKVYSF 83 + V++YGCQMNV+DS R+ + GY R DAD++V NTC +RE A ++Y Sbjct: 19 YEVRTYGCQMNVHDSERLAGLLEGAGYVRSPEGTEEGDADVVVFNTCAVRENADNRLYGN 78 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+ +K R + + V GC+AQ + + I +R+P V+VV G +LP LLERA Sbjct: 79 LGRLAPMKTRRP----GMQIAVGGCLAQKDRDTITKRAPWVDVVFGTHNIGKLPVLLERA 134 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + V+ S+E L R+ A++++ GC+ CTFC+VP RG E Sbjct: 135 RVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRGKE 189 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + +I+GL Sbjct: 190 KDRRTGDILAEVEALVAEGVSEITLLGQNVNAY---GSDIGDRQAFSKLLRACGKIEGLE 246 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HPRD +D +I A + +MP LH+P+QSGSD +L++M R + + II++ Sbjct: 247 RVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQERFLSIIEK 306 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ PD AI++D IVGFPGET++DF+ T+ V + +AQAF+F+YS R GTP + M Q Sbjct: 307 VRAAIPDAAITTDIIVGFPGETEEDFQQTLHTVREARFAQAFTFQYSKRPGTPAAEMDGQ 366 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434 + + V E RL+ LQ+++ ++ N G+++EV++ E G++ G +L GR+P Sbjct: 367 IPKEVVQERYMRLVALQEEISWEE---NKKQTGRVLEVMVAEGEGRKDGATRRLSGRAPD 423 Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 + V + + GD++ V IT L E Sbjct: 424 NRLVHFTKPDEEVRPGDVVTVEITYAAPHHLLAE 457 >gi|242279951|ref|YP_002992080.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio salexigens DSM 2638] gi|242122845|gb|ACS80541.1| RNA modification enzyme, MiaB family [Desulfovibrio salexigens DSM 2638] Length = 458 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 188/464 (40%), Positives = 273/464 (58%), Gaps = 32/464 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F V ++GCQMNV+DS + S+G+ V +AD+ ++NTC +R+K +KVYS LG Sbjct: 2 KFTVLTFGCQMNVHDSDWLIRAMESRGWTAVEE-SEADIFIINTCSVRDKPEQKVYSVLG 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RA 143 R+ L K G V V GCVAQ G+ L + P V +V G + P+ L A Sbjct: 61 RLAPL----CKNPGSF-VAVGGCVAQQIGDGFLEKFPHVRLVFGSDGIAQAPDALVDLAA 115 Query: 144 RFGKRVVDTDYSVEDKFER--------LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 KR+V TD+ + D ER ++ G G AF+ I +GCD FC +C+V Sbjct: 116 NHEKRLVLTDF-LGDYPEREGGEVQPNADLIPPGIGTIPG-QAFVNIMQGCDNFCAYCIV 173 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYS 253 PYTRG + SRS V+ E L+ +GV EITLLGQNVN++ G+D GE +F+ LLY Sbjct: 174 PYTRGRQKSRSSEAVIKECAHLVKSGVREITLLGQNVNSF---GIDKKGEDISFAQLLYK 230 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 +S I+GL R+R+TTSHP+D++ +IKA G+L L P LHLPVQSGSDRILK M R++ Sbjct: 231 ISAIEGLERIRFTTSHPKDIAPEVIKAFGELPNLCPSLHLPVQSGSDRILKKMGRKYDRE 290 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 Y I++ ++ P+I++++D IVGFPGETD+DF TMD+++++ Y +FSFKYS R G Sbjct: 291 RYLGIVEGLKEACPNISLTTDLIVGFPGETDEDFEQTMDMLERVRYESSFSFKYSDRPGV 350 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLV-- 429 M +V E+V RL LQ++ + +A G VL+E+ K E+G + Sbjct: 351 AAVKMKPKVPEDVAQARLARLQERQKRITRKSLEALEGHETVVLLERLSKRQEEGGMTWR 410 Query: 430 GRSPWLQSVVLNSKNHNI-----GDIIKVRITDVKISTLYGELV 468 G+ P + V ++ + G ++KV+IT+ K +L G V Sbjct: 411 GKDPGGRVVNVHFAGYGEEQKLGGKLVKVKITEAKNHSLVGAKV 454 >gi|291454555|ref|ZP_06593945.1| RNA modification enzyme [Streptomyces albus J1074] gi|291357504|gb|EFE84406.1| RNA modification enzyme [Streptomyces albus J1074] Length = 505 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 174/454 (38%), Positives = 266/454 (58%), Gaps = 29/454 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEKVYSF 83 + V++YGCQMNV+DS R+ + GY R DAD++V NTC +RE A ++Y Sbjct: 44 YEVRTYGCQMNVHDSERLAGLLEGAGYVRSPEGTEEGDADVVVFNTCAVRENADNRLYGN 103 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+ +K R + + V GC+AQ + + I +R+P V+VV G +LP LLERA Sbjct: 104 LGRLAPMKTRRP----GMQIAVGGCLAQKDRDTITKRAPWVDVVFGTHNIGKLPVLLERA 159 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + V+ S+E L R+ A++++ GC+ CTFC+VP RG E Sbjct: 160 RVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRGKE 214 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + +I+GL Sbjct: 215 KDRRTGDILAEVEALVAEGVSEITLLGQNVNAY---GSDIGDRQAFSKLLRACGKIEGLE 271 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HPRD +D +I A + +MP LH+P+QSGSD +L++M R + + II++ Sbjct: 272 RVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQERFLSIIEK 331 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ PD AI++D IVGFPGET++DF+ T+ V + +AQAF+F+YS R GTP + M Q Sbjct: 332 VRAAIPDAAITTDIIVGFPGETEEDFQQTLHTVREARFAQAFTFQYSKRPGTPAAEMDGQ 391 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434 + + V E RL+ LQ+++ ++ N G+++EV++ E G++ G +L GR+P Sbjct: 392 IPKEVVQERYMRLVALQEEISWEE---NKKQTGRVLEVMVAEGEGRKDGATRRLSGRAPD 448 Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 + V + + GD++ V IT L E Sbjct: 449 NRLVHFTKPDEEVRPGDVVTVEITYAAPHHLLAE 482 >gi|94968901|ref|YP_590949.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Koribacter versatilis Ellin345] gi|123256543|sp|Q1IQH5|MIAB_ACIBL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|94550951|gb|ABF40875.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Koribacter versatilis Ellin345] Length = 444 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 176/451 (39%), Positives = 265/451 (58%), Gaps = 20/451 (4%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ F+++++GCQMN +DS ++ SQGY +V + DA LI+ NTC IR+KA +KV+ Sbjct: 7 PKTFYIETFGCQMNFHDSEKVVGTLISQGYRQVETELDAGLILYNTCSIRDKAEQKVFHR 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L R L+ KEG V+ GCVAQ EGE+I R+P V++V G +Y L E+L + Sbjct: 67 LSEFRQLQ----KEGKRFAVL--GCVAQQEGEKIFERAPHVSLVAGSASYRNLAEMLVQI 120 Query: 144 RFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G + + D + FE G +R ++TI EGCDKFC +CVVPYTRG Sbjct: 121 ESGSQRITGLDDRETDQTFETEFTARGNAHR-----GYITIIEGCDKFCAYCVVPYTRGK 175 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SRS V+ EAR++ D G ++ LLGQNVN++ TF++LL ++ EI G+ Sbjct: 176 ERSRSAESVLREARQMADAGFTDVQLLGQNVNSYHDPS---GTMTFAELLTAVGEITGIK 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD + +++A + L ++HLPVQSGS ++L+ M R +T +Y + I Sbjct: 233 RVRFTTSHPRDFTRDIVEAIDNHPTLCDHVHLPVQSGSSKVLREMFREYTREQYLERISW 292 Query: 322 IRSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +++ + ++I++D IVGFPGET+ +F T+ L+D + Y FSFKYSPR TP ++ Sbjct: 293 MKATKNRKLSITTDVIVGFPGETETEFEETLALLDHVQYDGVFSFKYSPRPNTPALKYID 352 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW---LQS 437 V E K+ RL L + RE Q + +G+ IEV++E + + +GR+ L Sbjct: 353 TVPEQEKSRRLQILMEHQREIQRANYRKHIGETIEVMVEAENATRAQWIGRTSQNKTLNF 412 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + IG +V +T ++L GELV Sbjct: 413 TVPQTVQPEIGSYHQVLVTQAFPNSLVGELV 443 >gi|189464718|ref|ZP_03013503.1| hypothetical protein BACINT_01062 [Bacteroides intestinalis DSM 17393] gi|189436992|gb|EDV05977.1| hypothetical protein BACINT_01062 [Bacteroides intestinalis DSM 17393] Length = 470 Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 171/451 (37%), Positives = 270/451 (59%), Gaps = 20/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY +++++AD + +NTC IR+ A +K+ + L Sbjct: 33 KKLFIETYGCQMNVADSEVIASVMQMAGYSTADTLEEADAVFMNTCSIRDNAEQKILNRL 92 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK K+ +L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 93 EFFHSLK----KKKRNLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLVAAVE 147 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 148 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 202 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + DGE TF LL +++E VR Sbjct: 203 RSRDVESILNEVSDLVVKGYKEVTLLGQNVNSYRFEKPDGEVVTFPMLLRTVAEAAPGVR 262 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++T Y +D I Sbjct: 263 VRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLGRVDAI 322 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD +S+D GF ET++D ++ L++ GY AF FKYS R GT S L + Sbjct: 323 RRIIPDCGLSTDIFSGFHSETEEDHLLSLSLMEICGYDSAFMFKYSERPGTYASKHLPDD 382 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N C+G+ EVL+E K + +LVGR+ + Sbjct: 383 VSEEVKIRRLNEIIALQNRLSAES---NARCIGKTYEVLVEGVSKRSREQLVGRTEQNRV 439 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + H +GD + V+IT+ +TL GE V Sbjct: 440 VVFDRGTHRVGDFVMVKITEASSATLKGEEV 470 >gi|319936488|ref|ZP_08010904.1| tRNA 2-methylthioadenine synthetase [Coprobacillus sp. 29_1] gi|319808603|gb|EFW05155.1| tRNA 2-methylthioadenine synthetase [Coprobacillus sp. 29_1] Length = 480 Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 167/448 (37%), Positives = 267/448 (59%), Gaps = 16/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q++F+++YGCQ N D + + S GYE + + DA +++LNTC IRE A EKV+ + Sbjct: 44 QKYFIQTYGCQANERDGETLAGILESLGYEATDEIKDAQVVLLNTCAIRENAEEKVFGKI 103 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ +K + +++ + GC+AQ E ++IL + V+++ G +RLP LL++ Sbjct: 104 GYLKKVKRT----NPNVIFGICGCMAQEEVVIQKILEKHQQVDMIFGTHNIHRLPVLLKQ 159 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L +R A++ I GC+KFCT+C+VPYTRG Sbjct: 160 AMLDKEMVLEVWSKEGDVIENLP-----SHRAHPYKAWVNIMYGCNKFCTYCIVPYTRGK 214 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++++E +L G EITLLGQNVN++ GK D + F+ LL +++ G+ Sbjct: 215 ERSRLKNEIIEEVNELKAQGYQEITLLGQNVNSY-GKDFD-DGYNFASLLADVAQT-GIP 271 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP D +D +I D +MP +HLPVQSG+ +LK M RR++ +Y ++ D+ Sbjct: 272 RIRFTTSHPWDFTDDMIDTIAQYDNIMPAIHLPVQSGNSEVLKRMGRRYSREQYLELFDK 331 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ PD I++D IVGFPGETD+ F T+ L + Y A++F YSPR GTP + M + Sbjct: 332 IKTKIPDCTITTDIIVGFPGETDEQFEDTITLYEHCEYDLAYTFIYSPRAGTPAAKMEDD 391 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVL 440 +D + K +RL L + E+ + N + +++EVL+E K+ L G + + + Sbjct: 392 IDIHTKEQRLYRLNDLVNEKALKQNQKYLDEVVEVLVEGTSKKDDNMLTGYTRHQKLINF 451 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +IG I+ V++T+VK L GE + Sbjct: 452 KGNQDHIGQIVPVKVTEVKTWALKGEEI 479 >gi|270295132|ref|ZP_06201333.1| tRNA-I(6)A37 thiotransferase [Bacteroides sp. D20] gi|317478131|ref|ZP_07937306.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 4_1_36] gi|270274379|gb|EFA20240.1| tRNA-I(6)A37 thiotransferase [Bacteroides sp. D20] gi|316905729|gb|EFV27508.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 4_1_36] Length = 457 Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 170/452 (37%), Positives = 269/452 (59%), Gaps = 20/452 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY +++++AD + +NTC IR+ A +K+ + L Sbjct: 18 KKLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK K+ L+V V GC+A+ ++++ V++VVGP Y LPEL+ Sbjct: 78 EFFHSLK----KKKRGLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIASVE 132 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + DGE TF LL +++E VR Sbjct: 188 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPDGETITFPMLLRTVAEAAPGVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ D+ + ++HLPVQSGS RILK MNR++ Y + I Sbjct: 248 IRFTTSHPKDMSDETLQVIADMPNVCKHIHLPVQSGSSRILKLMNRKYDREWYMDRVAAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD +S+D GF ET++D + ++ L+++ GY AF FKYS R GT S L + Sbjct: 308 RRIIPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDSAFMFKYSERPGTHASKYLPDD 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N CVG+ EVL+E K + +L GR+ + Sbjct: 368 VPEEVKIRRLNEIIALQNRLSAEA---NARCVGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 VV + H +GD + V++T+ +TL GE V Sbjct: 425 VVFDRGTHRVGDFVMVKVTESSSATLKGEEVA 456 >gi|160947537|ref|ZP_02094704.1| hypothetical protein PEPMIC_01471 [Parvimonas micra ATCC 33270] gi|158446671|gb|EDP23666.1| hypothetical protein PEPMIC_01471 [Parvimonas micra ATCC 33270] Length = 441 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 170/449 (37%), Positives = 260/449 (57%), Gaps = 14/449 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + +++ + +YGCQMN +DS ++ + + GY + + ++ +D I+ NTC +RE A KVY Sbjct: 4 LSKKYTIITYGCQMNHHDSEKISYLLETLGYTKEDDLEKSDFIIYNTCLVRENAELKVYG 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELL 140 LG ++NLK + ++++ V GC+ Q I+ + V+++ G + RLP L+ Sbjct: 64 QLGALKNLKRKK----PEMIIAVCGCMMQTGDARATIISKYKHVDIIFGTKNISRLPSLI 119 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R R V+ + + I NR+ A++ I GC+ +CTFC+VPY RG Sbjct: 120 ARHRSTGEVIVDIEEEDIIDDETPI-----NREHPFIAYVNIMTGCNNYCTFCIVPYARG 174 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 EISR+ +++E + L G EITLLGQNVN++ GK L K TF +LL ++EI G+ Sbjct: 175 KEISRTPESIINEIKDLAKKGYKEITLLGQNVNSY-GKTLR-PKVTFPELLKMVNEIDGI 232 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHP+D SD LI A LD + +HLP QSGS++ILK M+R +T Y ++I Sbjct: 233 ERIRFLTSHPKDCSDELIDAMASLDKVCENIHLPFQSGSNKILKDMHRVYTREHYLELIR 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +++ P+I +S+D IVGFPGET++DF T+ +V+K+GY Q F+F YS R GT + M Sbjct: 293 KLKEKVPNITLSTDIIVGFPGETEEDFEDTLSMVEKVGYDQGFTFLYSIRKGTKAAEMQN 352 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439 Q+ VK ER L + + N C+GQ +EVL+E K L GR+ + V Sbjct: 353 QIPHEVKQERFQRLIDSMYKIFYEKNKECLGQTLEVLVEGISKNNPDILTGRTRGYKLVH 412 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 NIG ++ V+IT L GE+V Sbjct: 413 FKGGKRNIGQLVNVKITGHNSFALEGEIV 441 >gi|218131688|ref|ZP_03460492.1| hypothetical protein BACEGG_03309 [Bacteroides eggerthii DSM 20697] gi|217985991|gb|EEC52330.1| hypothetical protein BACEGG_03309 [Bacteroides eggerthii DSM 20697] Length = 456 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 170/451 (37%), Positives = 271/451 (60%), Gaps = 20/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY +++++AD + +NTC IR+ A +K+ + L Sbjct: 19 KKLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRL 78 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK K+ +L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 79 EFFHSLK----KKKKNLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 133 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 188 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + DGE TF LL ++ VR Sbjct: 189 RSRDVESILNEVSDLVAKGYKEVTLLGQNVNSYRFEKADGEVITFPMLLRIVAGAAPGVR 248 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ ++ + ++HLPVQSGS RILK MNR++T Y + +D I Sbjct: 249 IRFTTSHPKDMSDETLQVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVDAI 308 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD +S+D GF ET++D + ++ L+++ GY AF FKYS R GT S L + Sbjct: 309 RRIVPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDD 368 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N CVG+ EVL+E K + +L GR+ + Sbjct: 369 VPEEVKIRRLNEIIALQNRLSAEA---NARCVGKTYEVLVEGVSKRSRDQLFGRTEQNRV 425 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + H +GD + V+IT+ +TL GE V Sbjct: 426 VVFDRGAHRVGDFVTVKITESSSATLKGEEV 456 >gi|16329745|ref|NP_440473.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis sp. PCC 6803] gi|2501538|sp|P73127|MIAB_SYNY3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|1652230|dbj|BAA17153.1| sll0996 [Synechocystis sp. PCC 6803] Length = 451 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 175/452 (38%), Positives = 272/452 (60%), Gaps = 23/452 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R+ + ++GCQMN DS RM + + G + + ADL++ NTC IR+ A +KVYS+L Sbjct: 6 RRYHIITFGCQMNKADSERMAGILENLGMTYTDDPNQADLVLYNTCSIRDNAEQKVYSYL 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR + R + +L +VVAGCVAQ EGE++LRR P +++V+GPQ RL +LLE+ Sbjct: 66 GR----QAKRKQVEPELTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDQLLEQVW 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVD--GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +VV T E L I++ R+ V+A++ I GC++ C++CVVP RG+E Sbjct: 122 AGSQVVAT--------ESLHIMEDITKPRRESTVSAWVNIIYGCNERCSYCVVPNVRGVE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSE 256 SR+ + E L G E+TLLGQN++A+ G+ L G T +DLLY + + Sbjct: 174 QSRTPEAIYGEMEVLAQQGFKEVTLLGQNIDAY-GRDLPGTTPSGRHLHTLTDLLYHVHD 232 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I+G+ RLR+ TSHPR ++ LI+A +L + + H+P QSG + ILK+M R +T +Y Sbjct: 233 IEGIDRLRFATSHPRYFTERLIQACQELPKVCEHFHIPFQSGDNDILKAMKRGYTREKYL 292 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 QII++IR PD AIS+D IVGFPGET+ F T++L++++G+ + YSPR GTP + Sbjct: 293 QIIEKIRRYMPDAAISADVIVGFPGETEAQFENTLNLIEEVGFDLLNTAAYSPRPGTPAA 352 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435 Q+ E VK +RL L + Q + + +G++ EVL+E K G+++GR+ Sbjct: 353 FWDNQLSEEVKGDRLQRLNHLVSTQAMERSQRYLGRVEEVLVEGENLKSPGQVMGRTRGN 412 Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGE 466 + + + +G + V+IT+ + +L GE Sbjct: 413 RLTFFQGEISELLGKTVPVKITEARAFSLTGE 444 >gi|162453546|ref|YP_001615913.1| hypothetical protein sce5270 [Sorangium cellulosum 'So ce 56'] gi|229891000|sp|A9FST8|MIAB_SORC5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|161164128|emb|CAN95433.1| hypothetical protein sce5270 [Sorangium cellulosum 'So ce 56'] Length = 498 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 180/471 (38%), Positives = 260/471 (55%), Gaps = 35/471 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ + ++GCQMNV+DS RM D+ GY S D+AD++VLNTC +REKA +K+ S +G Sbjct: 3 RYSITTFGCQMNVHDSERMHDVLRCAGYTEAGSADEADVLVLNTCSVREKAEQKLRSEVG 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R+ K R D ++VVAGCVAQ EGE +L++ ++VVVGP LP LL Sbjct: 63 RLARWKRER----ADRVLVVAGCVAQQEGERLLKQMRAIDVVVGPDNIPELPGLLGDLAI 118 Query: 146 G-----KRVVDTDYSVEDKF--ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 G + V D D +F + + TAF+T+ +GCD+ C+FC+VP+T Sbjct: 119 GGLPIARTVFDLDAP---RFLVASPPSPSSSSSPRAAPTAFVTVMKGCDERCSFCIVPHT 175 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-----------GKGLDGEKCTF 247 RG E R ++V E L+ G E+TLLGQ VN++R D ++ F Sbjct: 176 RGPERYRPSDEIVAEIAALVAAGTREVTLLGQTVNSYRDPLGALPRAPGASADDPDESEF 235 Query: 248 SDLLYSLS-EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 + LL ++ ++ GL RLRYT+ HPR ++ L+ AH +L VL ++H+PVQSGSDR+L+ M Sbjct: 236 AALLRRVAADVPGLARLRYTSPHPRHLTPSLVLAHAELPVLPRHVHMPVQSGSDRVLRRM 295 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 RR+T EY + P + +S+D IVGFPGET+DDF AT+ LV ++G+ F FK Sbjct: 296 IRRYTRAEYVARTRALVEAVPGLTLSTDIIVGFPGETEDDFAATLSLVREVGFKGLFGFK 355 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 YS R TP + + V E VK ERL L ++ + A VG EVL+E KE+G Sbjct: 356 YSRRPHTPALKLPDDVPEGVKGERLARLFEESEALLAAHLSALVGTTQEVLVEGRDKERG 415 Query: 427 K-LVGRSPWLQSVVLNSKNH--------NIGDIIKVRITDVKISTLYGELV 468 G + W + H +G++++V I +L EL Sbjct: 416 HGGAGGALWSGRTGRHEIAHIDGAGELDLLGEVVEVSIARANKHSLQAELT 466 >gi|229820928|ref|YP_002882454.1| RNA modification enzyme, MiaB family [Beutenbergia cavernae DSM 12333] gi|229566841|gb|ACQ80692.1| RNA modification enzyme, MiaB family [Beutenbergia cavernae DSM 12333] Length = 549 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 174/455 (38%), Positives = 271/455 (59%), Gaps = 41/455 (9%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV-----NSMDDA---DLIVLNTCHIREKAAE 78 + +++ GCQMNV+DS RM M + G R N + DA D++V+NTC +RE AA Sbjct: 52 YMIRTLGCQMNVHDSERMAGMLEAAGLVRAAGDGTNLLQDAAEADVVVINTCAVRENAAT 111 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 ++Y LG++ +LK R L + V GC+AQ+E +I+ ++P V+VV G LP Sbjct: 112 RLYGNLGQLASLKRERP----GLQIAVGGCLAQSERTKIVEKAPWVDVVFGTHNLDALPV 167 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVP 196 LLERAR + + VE E L + KR A++++ GC+ CTFC+VP Sbjct: 168 LLERARH-----NAEAQVEIA-ESLQVFPSTLPTKRESAFAAWVSVSVGCNNTCTFCIVP 221 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLS 255 + RG E R +V+ E ++D G E+TLLGQNVN++ G+ G++ F+ LL + Sbjct: 222 HLRGKERDRRPGEVLAEVAAVVDAGAIEVTLLGQNVNSY---GVSFGDRGAFAKLLRACG 278 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI+GL R+R+T+ HP +D +I A +MP LH+P+QSGSDRIL++M R + + ++ Sbjct: 279 EIEGLERVRFTSPHPAAFTDDVIDAMASTPNVMPQLHMPLQSGSDRILRAMRRSYRSEKF 338 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I+DR+R+ PD AI++D IVGFPGET++DF AT+D+V ++ AF+F+YSPR GT Sbjct: 339 LGILDRVRARIPDAAITTDIIVGFPGETEEDFAATLDVVAASRFSSAFTFQYSPRPGTSA 398 Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKG---KL 428 + + +QV +V E RL+ LQ+++ ++ N A VG+ +EVLI G++ G +L Sbjct: 399 ATLPDQVPADVVTERYARLVALQERISAEE---NAALVGREVEVLISAGEGRKDGATSRL 455 Query: 429 VGRSP-------WLQSVVLNSKNHNIGDIIKVRIT 456 GR+ L + + ++ GD++ R+T Sbjct: 456 TGRARDNRLVHVALPASMTTAERPRPGDVVVTRVT 490 >gi|256784788|ref|ZP_05523219.1| hypothetical protein SlivT_09878 [Streptomyces lividans TK24] gi|289768676|ref|ZP_06528054.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces lividans TK24] gi|289698875|gb|EFD66304.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces lividans TK24] Length = 505 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 178/456 (39%), Positives = 264/456 (57%), Gaps = 28/456 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84 + V++YGCQMNV+DS R+ + GY R + DAD++V NTC +RE A K+Y L Sbjct: 16 YEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKLYGNL 75 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G + K SR + + V GC+AQ + + I++R+P V+VV G +LP LLERAR Sbjct: 76 GHLAPKKASRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 131 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + V+ S+E L R+ A+++I GC+ CTFC+VP RG E Sbjct: 132 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + I GL R Sbjct: 187 DRRPGDILAEVEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGNINGLER 243 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HPRD +D +I A + MP LH+P+QSGSD +LK+M R + Y II+++ Sbjct: 244 VRFTSPHPRDFTDDVIAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKV 303 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P AI++D IVGFPGET++DF T+ +V + +AQAF+F+YS R GTP + M Q+ Sbjct: 304 RAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQI 363 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWL 435 + V + ERL+ LQ+++ + N VG+ +E+++ E G++ G +L GR+P Sbjct: 364 PKAVVQERYERLVALQEEISWDE---NKKQVGRTLELMVAEGEGRKDGATHRLSGRAPDN 420 Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 + V + + GD++ V IT L E V Sbjct: 421 RLVHFTKPDQEVRPGDVVTVEITYAAPHHLLAEGAV 456 >gi|297208061|ref|ZP_06924492.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296887304|gb|EFH26206.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 514 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 171/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ + + + GY+ ++ AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D+L+ V GC++Q E +IL+ V+++ G + LPE+LE A Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK L + DLL ++S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I + ++P++HLPVQSG++ +LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P E+++ F T+ L D++G+ A+++ YS R GTP + M + V Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 NVK ERL L KK+ GQ + VL E K+ + L G + + V + Sbjct: 419 LNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG +++VRI + K +L G V Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504 >gi|15924282|ref|NP_371816.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus subsp. aureus Mu50] gi|15926875|ref|NP_374408.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus aureus subsp. aureus N315] gi|21282904|ref|NP_645992.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus aureus subsp. aureus MW2] gi|49486131|ref|YP_043352.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus aureus subsp. aureus MSSA476] gi|148267782|ref|YP_001246725.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus aureus subsp. aureus JH9] gi|150393841|ref|YP_001316516.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus aureus subsp. aureus JH1] gi|156979613|ref|YP_001441872.1| hypothetical protein SAHV_1282 [Staphylococcus aureus subsp. aureus Mu3] gi|253733470|ref|ZP_04867635.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus TCH130] gi|255006079|ref|ZP_05144680.2| hypothetical protein SauraM_06400 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795652|ref|ZP_05644631.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A9781] gi|258421638|ref|ZP_05684562.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A9719] gi|258434794|ref|ZP_05688868.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus A9299] gi|258444630|ref|ZP_05692959.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A8115] gi|258447537|ref|ZP_05695681.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A6300] gi|258449379|ref|ZP_05697482.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A6224] gi|258454758|ref|ZP_05702722.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A5937] gi|269202909|ref|YP_003282178.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp. aureus ED98] gi|282892780|ref|ZP_06301015.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A8117] gi|282927634|ref|ZP_06335250.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A10102] gi|295406229|ref|ZP_06816036.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A8819] gi|296274850|ref|ZP_06857357.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus aureus subsp. aureus MR1] gi|297244457|ref|ZP_06928340.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A8796] gi|300912143|ref|ZP_07129586.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus TCH70] gi|81649395|sp|Q6G9S1|MIAB_STAAS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|81704466|sp|Q7A110|MIAB_STAAW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|81705771|sp|Q7A5W3|MIAB_STAAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|81781679|sp|Q99UI1|MIAB_STAAM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229891002|sp|A7X1T3|MIAB_STAA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229891003|sp|A6U1B1|MIAB_STAA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229891004|sp|A5ISH6|MIAB_STAA9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|13701092|dbj|BAB42387.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus N315] gi|14247062|dbj|BAB57454.1| similar to tRNA 2-methylthioadenosine synthase [Staphylococcus aureus subsp. aureus Mu50] gi|21204343|dbj|BAB95040.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244574|emb|CAG43003.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|147740851|gb|ABQ49149.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus JH9] gi|149946293|gb|ABR52229.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus JH1] gi|156721748|dbj|BAF78165.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253728524|gb|EES97253.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus TCH130] gi|257789624|gb|EEV27964.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A9781] gi|257842324|gb|EEV66749.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A9719] gi|257849155|gb|EEV73137.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus A9299] gi|257850123|gb|EEV74076.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A8115] gi|257853728|gb|EEV76687.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A6300] gi|257857367|gb|EEV80265.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A6224] gi|257863141|gb|EEV85905.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A5937] gi|262075199|gb|ACY11172.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp. aureus ED98] gi|282590637|gb|EFB95714.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A10102] gi|282764777|gb|EFC04902.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A8117] gi|285816974|gb|ADC37461.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus aureus 04-02981] gi|294968817|gb|EFG44839.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A8819] gi|297178487|gb|EFH37733.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A8796] gi|300886389|gb|EFK81591.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus TCH70] gi|312829686|emb|CBX34528.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131086|gb|EFT87070.1| hypothetical protein CGSSa03_06074 [Staphylococcus aureus subsp. aureus CGS03] gi|329727394|gb|EGG63850.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus 21172] Length = 514 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 171/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ + + + GY+ ++ AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D+L+ V GC++Q E +IL+ V+++ G + LPE+LE A Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK L + DLL ++S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I + ++P++HLPVQSG++ +LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P E+++ F T+ L D++G+ A+++ YS R GTP + M + V Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 NVK ERL L KK+ GQ + VL E K+ + L G + + V + Sbjct: 419 LNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG +++VRI + K +L G V Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504 >gi|168334526|ref|ZP_02692687.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Epulopiscium sp. 'N.t. morphotype B'] Length = 474 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 170/447 (38%), Positives = 259/447 (57%), Gaps = 15/447 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF+ ++GCQMN DS ++E + GY + S AD ++ NTC +RE A K++ LG Sbjct: 35 FFIGTFGCQMNALDSEKIEGVLTKLGYTKAASEKTADFLIYNTCCVRENAELKIFGKLGA 94 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE-RA 143 +++ R K+ + +V + GC+ Q + + + ++ V+++ G Y+LPELL+ R Sbjct: 95 LKH----RKKKXPNFMVALCGCMMQQDVVLKTLKQKYKFVDIIFGTYNIYKLPELLQTRI 150 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+ ++D + ++ E L + RK + + I GC+ FCT+C+VPY RG E Sbjct: 151 ETGENIIDIWETHQEIVEDLPSI-----RKHQFKSCVNIMYGCNNFCTYCIVPYVRGRER 205 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + + D+ + L+D+GV EI LLGQNVN++ GK L K TF+DLL L+ I GL R+ Sbjct: 206 SREVDDIYDQVKALVDDGVKEIMLLGQNVNSY-GKNL-ATKPTFTDLLERLASIDGLKRI 263 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D S LI + D + LHLP+QSGS RIL+ MNR +T EY ++ +I+ Sbjct: 264 RFMTSHPKDFSXQLIDSIAKHDNICKGLHLPIQSGSTRILQQMNRGYTREEYLDLVAKIK 323 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P +++D IVGFPGE+D DF T+D+V +I Y AF+F YS R GTP + M QVD Sbjct: 324 KAIPSATLTTDIIVGFPGESDSDFADTLDVVTQIQYLSAFTFIYSKRTGTPAATMENQVD 383 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442 E+V R L + F A +G E+L+E K ++ GR+ V + + Sbjct: 384 EDVIKARFNQLVAAVNTIAADFMAAQIGNTYEILLEDSSKNDATMLSGRTDTGILVHVKA 443 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 + IG+ + V+IT+ K L GE+ V Sbjct: 444 PLNFIGEFVTVQITNSKTHYLVGEIKV 470 >gi|297156736|gb|ADI06448.1| adenosine tRNA methylthiotransferase [Streptomyces bingchenggensis BCW-1] Length = 497 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 181/457 (39%), Positives = 266/457 (58%), Gaps = 32/457 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDA--DLIVLNTCHIREKAAEKV 80 + V++YGCQMNV+DS R+ + GY E V D+A D++V NTC +RE A ++ Sbjct: 4 YEVRTYGCQMNVHDSERLSGLLEEAGYVRAPEGVGEGDEAFADVVVFNTCAVRENADNRL 63 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 Y LGR+ +K R + + V GC+AQ + + I++++P V+VV G LP LL Sbjct: 64 YGNLGRLAPIKARRP----GMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGSLPVLL 119 Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 ERAR + V+ S+E L R+ A+++I GC+ CTFC+VP R Sbjct: 120 ERARIQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 174 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258 G E R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + + Sbjct: 175 GKEKDRRPGDILAEVETLVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGNVS 231 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R+T+ HPRD +D +I A + + +MP LH+P+QSGSD +LK+M R + Y I Sbjct: 232 GLERVRFTSPHPRDFTDDVIAAMAETENVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGI 291 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I+++R+ PD AIS+D IVGFPGETD DF T+ +V + +AQAF+F+YS R GTP + M Sbjct: 292 IEKVRAAMPDAAISTDIIVGFPGETDADFEQTLHVVREARFAQAFTFQYSKRPGTPAAEM 351 Query: 379 LEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGR 431 QV + V + ERL+ LQ+++ ++ N VG+ +EVL+ E G++ G +L GR Sbjct: 352 DGQVPKAVVQERYERLVALQEEISWEE---NKKQVGRTVEVLVAEGEGRKDGATHRLSGR 408 Query: 432 SPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 +P + V + GD++ V IT L E Sbjct: 409 APDNRLVHFARPEERVRPGDVVTVDITYAAPHHLLAE 445 >gi|172040556|ref|YP_001800270.1| hypothetical protein cur_0876 [Corynebacterium urealyticum DSM 7109] gi|229890501|sp|B1VDD8|MIAB_CORU7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|171851860|emb|CAQ04836.1| unnamed protein product [Corynebacterium urealyticum DSM 7109] Length = 540 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 168/477 (35%), Positives = 276/477 (57%), Gaps = 44/477 (9%) Query: 8 IGVAHMVSQIVDQCIVPQR-----FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA 62 +G AH+ + + V ++ + V+++GCQMNV+DS R+ + GY+ + ++ Sbjct: 19 VGSAHVTHAMKKKTSVSEQPEQRTYEVRTFGCQMNVHDSERLSGLLEDSGYQPAANGEEP 78 Query: 63 DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP 122 D++V NTC +RE A ++Y L ++ +K+ + + V GC+AQ + + ++ R+P Sbjct: 79 DVLVFNTCAVRENADNRLYGTLAMVKPMKD----RNPGMQIAVGGCMAQKDKDAVVDRAP 134 Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182 V+VV G LP LLER+ +R + + D E V R+ + ++++ Sbjct: 135 WVDVVFGTHNIGSLPTLLERSAHNQRA---EVEILDSLEEFPSVLPA-KRESAYSGWVSV 190 Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGK 238 GC+ CTFC+VP RG E R +++ E + L+D GV E+TLLGQNVNA+ + Sbjct: 191 SVGCNNTCTFCIVPSLRGKEQDRRPGEILAEVQALVDQGVQEVTLLGQNVNAYGVNFADE 250 Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 L ++ F+ LL + EI+GL RLR+T+ HP + +D +I A + + P LH+P+QSG Sbjct: 251 DLPRDRGAFAKLLRACGEIEGLERLRFTSPHPAEFTDDVIDAMAETPNVCPQLHMPLQSG 310 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 SDRILK M R + + ++ I+D++R P AI++D IVGFPGET++DF+AT+D+V+K Sbjct: 311 SDRILKEMRRSYRSKKFLGILDKVRERIPHAAITTDIIVGFPGETEEDFQATLDVVEKAR 370 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIE 415 ++ AF+F+YSPR GTP + M +Q+ + V + ERL+ LQ+++ Q N VG E Sbjct: 371 FSCAFTFQYSPRPGTPAATMPDQIPKAVVQERYERLIALQERI---QAEDNKELVGTTQE 427 Query: 416 VLIEKHGKEK-------------GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459 +L+++ G K G+LV +P S++ GDI++V ITD + Sbjct: 428 LLVQETGGRKDAQRHRMSGRARDGRLVHFTP--------SEDVRPGDIVEVTITDAR 476 >gi|251771426|gb|EES52005.1| TRNA-i(6)A37 modification enzyme (MiaB) [Leptospirillum ferrodiazotrophum] Length = 452 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 164/412 (39%), Positives = 244/412 (59%), Gaps = 11/412 (2%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + ++++GCQMNV+DS RM + GY + + A LI++NTC +R+KA +K S LGR Sbjct: 18 YHIRTFGCQMNVHDSERMAGILAEAGYRSTDDPEAASLIIVNTCTVRDKADQKALSDLGR 77 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R LK K G+ ++ V GC+A+ E E + R P +++V GP L +++R R Sbjct: 78 LRLLK----KGEGEKILAVTGCMAEREQERLHRIMPEIDLVAGPAQVRNLLPMIDRLRAE 133 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 KR + + F+ + R GVTA +T+QEGCDK C++CVVP TRG E SR Sbjct: 134 KR-----FQLGRDFDLPEMTTPPAIRPPGVTALVTVQEGCDKSCSYCVVPRTRGPERSRP 188 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 ++ +V E R L+ G E+TLLGQNVN + +GE F+DLL +L ++GL+R+R+T Sbjct: 189 IASIVSEVRGLVSQGYREVTLLGQNVNGYGKGAPEGEG--FADLLLALDRVEGLLRIRFT 246 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHP D+ I A +MP+LHLPVQSGSDR+L+ M R +T EYR+ I +R+ Sbjct: 247 TSHPSDLDLPTIGAMARSSKVMPHLHLPVQSGSDRMLRLMERGYTLEEYREKIRHLRAAI 306 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD+A+++D IVGF E+++DF+ T++ V + + AF F YSPR GTP D +V Sbjct: 307 PDVALTTDLIVGFCEESEEDFQRTLEAVREFRFDGAFCFIYSPRPGTPAYGREGLPDRSV 366 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 +R L L + N +G E+L+E+ + GRSP ++V Sbjct: 367 SLDRFRRLDDLLTGMVLEKNRGRIGATEEILVERTDEASRTFSGRSPHFRTV 418 >gi|242373585|ref|ZP_04819159.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis M23864:W1] gi|242348948|gb|EES40550.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis M23864:W1] Length = 514 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 171/446 (38%), Positives = 265/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ M + + GY + ++ AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVMAGILKALGYSATSDINQADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE + L+ V GC++Q E +IL+ V+++ G + LPE+LE A Sbjct: 130 LKHLK----KERPECLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGSIKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++E R+L G EITLLGQNVN++ GK ++G DLL +S+I + R+ Sbjct: 241 SRRPEDIINEVRELAREGYQEITLLGQNVNSY-GKDIEGLDYGLGDLLEDISKID-IPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I+ + ++P++HLPVQSG++ +LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDRMIEVIANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVSRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PDIA+++D IVG+P ET++ F T+ L D++ + A+++ YS R GTP + M + V Sbjct: 359 NAIPDIALTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 VK ERL L KK+ E G+I+ VL E K+ L G + + V + Sbjct: 419 TEVKKERLQRLNKKVGEYSQKAMSQYEGEIVTVLCEGSSKKDDTVLAGYTAKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ V+I + K +L G V Sbjct: 479 PKEMIGKLVDVKIDEAKQYSLNGTFV 504 >gi|29348604|ref|NP_812107.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides thetaiotaomicron VPI-5482] gi|253569055|ref|ZP_04846465.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|81443605|sp|Q8A2W0|MIAB_BACTN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|29340509|gb|AAO78301.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] gi|251841074|gb|EES69155.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 455 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 170/451 (37%), Positives = 267/451 (59%), Gaps = 20/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD + +NTC IR+ A +K+ + L Sbjct: 18 KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK K+ L+V V GC+A+ ++++ V++VVGP Y LPEL+ Sbjct: 78 EFFHSLK----KKKKALIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIAAVE 132 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ D S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 133 AGEKAINVDLSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + GE TF LL ++E VR Sbjct: 188 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPTGEVVTFPMLLRMVAEAAPGVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++T Y + I Sbjct: 248 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 + + PD +++D GF ET++D + ++ L+++ GY AF FKYS R GT S LE Sbjct: 308 KRIIPDCGLTTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLEDN 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E+VK RL + LQ +L + N C+G+ EVL+E K + +L GR+ + Sbjct: 368 VPEDVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + H IGD + VR+T+ +TL GE V Sbjct: 425 VVFDRGTHRIGDFVNVRVTEASSATLKGEEV 455 >gi|53711319|ref|YP_097311.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides fragilis YCH46] gi|60679624|ref|YP_209768.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides fragilis NCTC 9343] gi|253564573|ref|ZP_04842030.1| SAM/TRAM family methylase [Bacteroides sp. 3_2_5] gi|265764766|ref|ZP_06093041.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16] gi|81317302|sp|Q5LJ70|MIAB_BACFN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|81384036|sp|Q650P7|MIAB_BACFR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|52214184|dbj|BAD46777.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|60491058|emb|CAH05806.1| putative SAM/TRAM family methylase protein [Bacteroides fragilis NCTC 9343] gi|251948349|gb|EES88631.1| SAM/TRAM family methylase [Bacteroides sp. 3_2_5] gi|263254150|gb|EEZ25584.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16] gi|301161106|emb|CBW20643.1| putative SAM/TRAM family methylase protein [Bacteroides fragilis 638R] Length = 457 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 169/451 (37%), Positives = 266/451 (58%), Gaps = 20/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD + +NTC IR+ A +K+ + L Sbjct: 18 KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++K K+ L+V V GC+A+ ++++ V++VVGP Y LPEL+ Sbjct: 78 EFFHSMK----KKKKHLIVGVLGCMAERVKDDLIEHHH-VDLVVGPDAYLTLPELIASVE 132 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G EITLLGQNVN++R + GE TF LL ++E +R Sbjct: 188 RSRDVESILNEVADLVSKGYKEITLLGQNVNSYRFEKEGGEVVTFPMLLRLVAEAAPGIR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++T Y + I Sbjct: 248 VRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 + + PD +++D GF ET++D R ++ L++ GY AF FKYS R GT S LE Sbjct: 308 KRIVPDCGLTTDIFSGFHSETEEDHRESLSLMEACGYDAAFMFKYSERPGTYASKHLEDN 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E +K RL + LQ +L + N+ C+G+ EVL+E K + +L GR+ + Sbjct: 368 VPEEIKVRRLNEIIALQNRLSAES---NNRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + H IGD + VRIT+ +TL GE V Sbjct: 425 VVFDRGTHRIGDFVNVRITEASSATLKGEEV 455 >gi|183981993|ref|YP_001850284.1| hypothetical protein MMAR_1979 [Mycobacterium marinum M] gi|229890404|sp|B2HL08|MIAB2_MYCMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB 2; AltName: Full=tRNA-i(6)A37 methylthiotransferase 2 gi|183175319|gb|ACC40429.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 532 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 171/453 (37%), Positives = 264/453 (58%), Gaps = 24/453 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS RM + + GY R DAD++V NTC +RE A K+Y L Sbjct: 26 YQVRTYGCQMNVHDSERMAGLLEAAGYRRAAEGTDADVVVFNTCAVRENADNKLYGNLSH 85 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + D+ + V GC+AQ + + +LR++P V+VV G LP LL+RAR Sbjct: 86 L----APRKRTSPDMQIAVGGCLAQKDRDALLRKAPWVDVVFGTHNIGSLPALLDRARH- 140 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 RV + + + S+ R+ A+++I GC+ CTFC+VP RG EI RS Sbjct: 141 NRVAQVEIAEALQQFPSSLPSA---RESAYAAWVSISVGCNNTCTFCIVPSLRGKEIDRS 197 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 + ++ E + L+D GV EITLLGQNVNA+ L + F++LL + +I GL R Sbjct: 198 PADILAEVQSLVDTGVVEITLLGQNVNAYGVSFADPALPRNRGAFAELLRACGDIDGLER 257 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP + +D +I+A + P LH+P+QSGSDR+L++M R + A Y II+R+ Sbjct: 258 VRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERYLGIIERV 317 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P AI++D IVGFPGET+ DF AT+D+V + ++ AF+F+YS R GTP + + Q+ Sbjct: 318 RAAMPHAAITTDLIVGFPGETEQDFAATLDVVRQARFSAAFTFQYSKRPGTPAAELDGQL 377 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLVGRSPWL 435 + V + ERL+ LQ+++ + N A VGQ +E+L+ K ++ GR+ Sbjct: 378 PKAVVQERYERLVELQEQI---SLEGNRAIVGQRVELLVATGEGRKDTLTARMSGRARDG 434 Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 + V + + + GDI+ V +TD L + Sbjct: 435 RLVHFRAGDGPVRPGDIVTVEVTDAAPHHLIAD 467 >gi|302537334|ref|ZP_07289676.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. C] gi|302446229|gb|EFL18045.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. C] Length = 506 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 175/452 (38%), Positives = 269/452 (59%), Gaps = 26/452 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84 + V++YGCQMNV+DS R+ + GY R S DAD++V NTC +RE A K+Y L Sbjct: 18 YEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNKLYGNL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+ +K R + + V GC+AQ + + I++++P V+VV G +LP LLERAR Sbjct: 78 GRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERAR 133 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + ++ S+E L R+ A+++I GC+ CTFC+VP RG E Sbjct: 134 VQEEAQIEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEE 188 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 R ++ E L+ GV EITLLGQNVNA+ G L G++ FS LL + +I+GL R+ Sbjct: 189 DRRPGDILAEVEALVAEGVSEITLLGQNVNAY-GSDL-GDREAFSKLLRACGQIEGLERV 246 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP+D +D +I A + +MP LH+P+QSGSD IL++M R + + II+++R Sbjct: 247 RFTSPHPKDFTDDVIAAMAETPNVMPQLHMPLQSGSDPILRAMRRSYRQERFLGIIEKVR 306 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P AIS+D IVGFPGET++DF+ TM +V + +A AF+F+YS R GTP ++M Q+ Sbjct: 307 AAIPHAAISTDIIVGFPGETEEDFQQTMHVVREARFAGAFTFQYSKRPGTPAADMEGQIP 366 Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQ 436 + V + RL+ LQ+++ ++ N VG+ +EV++ E G++ G +L GR+P + Sbjct: 367 KEVVQDRYMRLVALQEEISWEE---NKKQVGRTLEVMVAEGEGRKDGATARLSGRAPDNR 423 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 V + ++ GD++ V IT L E Sbjct: 424 LVHFTKPDEDVRPGDVVTVEITYAAPHHLLAE 455 >gi|22298858|ref|NP_682105.1| hypothetical protein tlr1315 [Thermosynechococcus elongatus BP-1] gi|81743104|sp|Q8DJB2|MIAB_THEEB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|22295039|dbj|BAC08867.1| tlr1315 [Thermosynechococcus elongatus BP-1] Length = 450 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 177/453 (39%), Positives = 270/453 (59%), Gaps = 23/453 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+R+++ ++GCQMN DS RM + + G E D+AD+++ NTC IR+ A +K+YS Sbjct: 1 MPRRYYITTFGCQMNKADSERMAGILEAMGLELAAEPDEADVLLYNTCTIRDNAEQKLYS 60 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +LGR + R + +L ++VAGCVAQ EGE++LRR P V++V+GPQ RL ELLE+ Sbjct: 61 YLGR----QAKRKHQDPNLTLIVAGCVAQQEGEQLLRRVPEVDLVMGPQYANRLGELLEQ 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRG 200 G +VV T E L IV+ +R VTA++ + GC++ CT+CVVP RG Sbjct: 117 VWNGSQVVAT--------EPLQIVEDITKPRRDSTVTAWVNVIYGCNERCTYCVVPGVRG 168 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSL 254 E SR + E +L G E+TLLGQN++A+ G+ L G + TF+DLLY + Sbjct: 169 QEQSRRPEAIRAEIEELAAQGYKEVTLLGQNIDAY-GRDLPGITPEGRRQHTFTDLLYYI 227 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 ++ G+ R+R+ TSHPR ++ LI+A +L + + H+P QSG + ILK+M R +T Sbjct: 228 HDVAGIERIRFATSHPRYFTERLIRACAELPKVCKHFHIPFQSGDNEILKAMARGYTRER 287 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 Y II+ IR PD AIS+D IVGFPGET++ F+ T+DLV +G+ Q + YSPR TP Sbjct: 288 YLHIIETIRRYMPDAAISADAIVGFPGETEEQFQRTLDLVAAVGFDQLNTAAYSPRPNTP 347 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSP 433 + QV E +K +RL L + + + +G+ VL+E + K+ ++ GR+ Sbjct: 348 AATWENQVPEAIKEDRLQRLNHLVAKIAGDRSQRYLGREEVVLVEGVNPKDAQQVYGRTD 407 Query: 434 WLQSVVLNSKNHNI-GDIIKVRITDVKISTLYG 465 + L + G +++VRIT+ + +L G Sbjct: 408 GNRLTYLPGDIETLRGQLVRVRITEARAFSLSG 440 >gi|326333227|ref|ZP_08199474.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Nocardioidaceae bacterium Broad-1] gi|325948871|gb|EGD40964.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Nocardioidaceae bacterium Broad-1] Length = 500 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 172/454 (37%), Positives = 263/454 (57%), Gaps = 23/454 (5%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 M + I + + V++YGCQMNV+DS R+ + GY + AD++V NTC + Sbjct: 1 MTTSIASGSATARTYEVRTYGCQMNVHDSERLSGLLEDAGYLKATEGTQADVVVFNTCAV 60 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 RE A K+Y L + +K + DL + V GC+AQ + I ++P V+VV G Sbjct: 61 RENADNKLYGNLSHLAPIKEA----NPDLQIAVGGCLAQKDRATITEKAPYVDVVFGTHN 116 Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFC 190 LP LLERAR V + VE E L + KR A++++ GC+ C Sbjct: 117 IGSLPVLLERAR-----VQEEAQVE-ILESLEVFPSTLPTKRESAYAAWVSVSVGCNNTC 170 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSD 249 TFC+VP RG E R +++ E L+ GV E+TLLGQNVNA+ G++ G++ FS Sbjct: 171 TFCIVPSLRGKEKDRRPGEILAEIEALVAEGVTEVTLLGQNVNAY---GVEFGDRQAFSK 227 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL + EI+GL R+R+T+ HP + +D +I+A + +MP LH+P+QSGSDR+LK+M R Sbjct: 228 LLRACGEIEGLERVRFTSPHPAEFTDDVIEAMAETPNVMPSLHMPLQSGSDRVLKAMRRS 287 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + + ++ II+R+R P AI++D IVGFPGET++DF+AT+D+V + +A AF+F+YS Sbjct: 288 YRSTKFLGIIERVREAIPHAAITTDIIVGFPGETEEDFQATLDVVRESRFASAFTFQYSK 347 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK---EK 425 R GTP +++ +Q+ V +R L + E N VG+ +E+++ E G+ E Sbjct: 348 RPGTPAADLPDQISPEVVKDRYGRLVDLVNEIAYEENKKNVGRTLELMVAEGEGRKDAET 407 Query: 426 GKLVGRSPWLQSVVLNSKNHN---IGDIIKVRIT 456 +L GR+P + V N+ GD++KV IT Sbjct: 408 HRLSGRAPDNRLVHFNAAGAEGVRPGDMVKVEIT 441 >gi|57651862|ref|YP_186168.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp. aureus COL] gi|87160782|ref|YP_493882.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195002|ref|YP_499802.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221413|ref|YP_001332235.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp. aureus str. Newman] gi|161509458|ref|YP_001575117.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142526|ref|ZP_03567019.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452591|ref|ZP_05700597.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A5948] gi|262048179|ref|ZP_06021066.1| hypothetical protein SAD30_1955 [Staphylococcus aureus D30] gi|262051352|ref|ZP_06023575.1| hypothetical protein SA930_2074 [Staphylococcus aureus 930918-3] gi|282920536|ref|ZP_06328257.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A9765] gi|284024285|ref|ZP_06378683.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus aureus subsp. aureus 132] gi|294848288|ref|ZP_06789035.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A9754] gi|304381143|ref|ZP_07363796.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694614|sp|Q5HGD9|MIAB_STAAC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|123407056|sp|Q2FZ02|MIAB_STAA8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|123486136|sp|Q2FHE6|MIAB_STAA3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229891005|sp|A6QGJ1|MIAB_STAAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229891006|sp|A8Z1W3|MIAB_STAAT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|57286048|gb|AAW38142.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp. aureus COL] gi|87126756|gb|ABD21270.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202560|gb|ABD30370.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374213|dbj|BAF67473.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp. aureus str. Newman] gi|160368267|gb|ABX29238.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859809|gb|EEV82651.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A5948] gi|259160727|gb|EEW45748.1| hypothetical protein SA930_2074 [Staphylococcus aureus 930918-3] gi|259163745|gb|EEW48300.1| hypothetical protein SAD30_1955 [Staphylococcus aureus D30] gi|282594198|gb|EFB99185.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A9765] gi|294825088|gb|EFG41510.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A9754] gi|302751114|gb|ADL65291.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340126|gb|EFM06067.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198534|gb|EFU28863.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus CGS01] gi|320143843|gb|EFW35615.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus MRSA177] gi|329313962|gb|AEB88375.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Staphylococcus aureus subsp. aureus T0131] gi|329727801|gb|EGG64252.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus 21189] Length = 514 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ + + + GY+ ++ AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D+L+ V GC++Q E +IL+ V+++ G + LPE+LE A Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK L + DLL ++S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I + ++P++HLPVQSG++ +LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P E+++ F T+ L D++G+ A+++ YS R GTP + M + V Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 NVK ERL L KK+ GQ + VL E K+ + L G + + V + Sbjct: 419 LNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG +++VRI + K +L G + Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFI 504 >gi|21224132|ref|NP_629911.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces coelicolor A3(2)] gi|81344644|sp|O69963|MIAB_STRCO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|2995295|emb|CAA18324.1| conserved hypothetical protein SC4H2.08 [Streptomyces coelicolor A3(2)] Length = 505 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 178/456 (39%), Positives = 264/456 (57%), Gaps = 28/456 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84 + V++YGCQMNV+DS R+ + GY R + DAD++V NTC +RE A K+Y L Sbjct: 16 YEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKLYGNL 75 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G + K SR + + V GC+AQ + + I++R+P V+VV G +LP LLERAR Sbjct: 76 GHLAPKKASRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 131 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + V+ S+E L R+ A+++I GC+ CTFC+VP RG E Sbjct: 132 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + I GL R Sbjct: 187 DRRPGDILAEVEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGNIDGLER 243 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HPRD +D +I A + MP LH+P+QSGSD +LK+M R + Y II+++ Sbjct: 244 VRFTSPHPRDFTDDVIAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKV 303 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P AI++D IVGFPGET++DF T+ +V + +AQAF+F+YS R GTP + M Q+ Sbjct: 304 RAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQI 363 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWL 435 + V + ERL+ LQ+++ + N VG+ +E+++ E G++ G +L GR+P Sbjct: 364 PKAVVQERYERLVALQEEISWDE---NKKQVGRTLELMVAEGEGRKDGATHRLSGRAPDN 420 Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 + V + + GD++ V IT L E V Sbjct: 421 RLVHFTKPDQEVRPGDVVTVEITYAAPHHLLAEGAV 456 >gi|271963754|ref|YP_003337950.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Streptosporangium roseum DSM 43021] gi|270506929|gb|ACZ85207.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Streptosporangium roseum DSM 43021] Length = 502 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 175/441 (39%), Positives = 264/441 (59%), Gaps = 26/441 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS R+ + GY V + AD++V NTC +RE A K+Y LG Sbjct: 15 YEVRTYGCQMNVHDSERLSGLLEDAGYVPVPEGEAADVVVFNTCAVRENADNKLYGNLG- 73 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +L+ S++ G + + V GC+AQ + EI+R++P V+VV G LP LLERAR Sbjct: 74 --HLRPSKVSNPG-MQIAVGGCLAQKDQGEIVRKAPWVDVVFGTHNIGSLPVLLERARVR 130 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + V+ S+E L R+ A++++ GC+ CTFC+VP RG E R Sbjct: 131 QEAQVEIKESLETFPSTLPT-----KRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDR 185 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 +++E R L+D GV EITLLGQNVN + G++ G++ F LL + +I GL R+R Sbjct: 186 RPGDILNEVRTLVDQGVLEITLLGQNVNTY---GVEFGDRLAFGKLLRACGDIDGLERVR 242 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP +D +I A + +M LH+P+QSGSDRILK+M R + A Y II+R+R+ Sbjct: 243 FTSPHPAAFTDDVIAAMAETPNVMHQLHMPLQSGSDRILKAMRRSYRAERYLGIIERVRA 302 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD AIS+D IVGFPGET++DF+ T+D+V + +A AF+F+YS R GTP + M +Q+ + Sbjct: 303 AMPDAAISTDIIVGFPGETEEDFQGTLDVVRESRFANAFTFQYSIRPGTPAATMDDQIPK 362 Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRSP--WL 435 V + ERL+ LQ ++ ++ N VG+ +EVL+ E G++ +L GR+ L Sbjct: 363 EVVQERYERLVALQTEISWEE---NKKQVGRTLEVLVAEGEGRKDEATRRLSGRASDNRL 419 Query: 436 QSVVLNSKNHNIGDIIKVRIT 456 + GD++ V +T Sbjct: 420 VHFAPGEETPRPGDMVAVEVT 440 >gi|327439595|dbj|BAK15960.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046] Length = 511 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 172/450 (38%), Positives = 264/450 (58%), Gaps = 19/450 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F GY +++AD+++LNTC IRE A KV+ L Sbjct: 64 RKFYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEMIEEADVVLLNTCAIRENAENKVFGEL 123 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G + K ++ ++L+ V GC++Q E +IL++ V++V G +RLP +L Sbjct: 124 GFLLKYK----RKNPEMLIGVCGCMSQEESVVNKILKQYQHVDMVFGTHNIHRLPNILHD 179 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTR 199 A K +V +S E D E L +KR + A++ I GCDKFCT+C+VPYTR Sbjct: 180 AYMSKEMVVEVWSKEGDVIENLP-------KKRIGSIKAWVNIMYGCDKFCTYCIVPYTR 232 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR +++ E R+L G EI LLGQNVNA+ GK D + DL+ L +I Sbjct: 233 GKERSRRPEEIIQEVRELAAQGYKEIMLLGQNVNAY-GKDFDDIEYRLGDLMDELRKI-D 290 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+TTSHPRD D LIK L+ ++HLPVQSGS+ ILK M R++T + Q++ Sbjct: 291 IPRIRFTTSHPRDFDDHLIKVLAKGGNLVDHIHLPVQSGSNEILKIMARKYTREHFLQLV 350 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 D+I++ P + +++D IVG+P ET++ F+ T+DL ++G+ AF++ YSPR GTP + M+ Sbjct: 351 DKIKAAIPGVTLTTDIIVGYPNETEEQFQETLDLYRQVGFDMAFTYIYSPREGTPAAKMV 410 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438 + V E K +RL L + E GQ +EVL+E K + L G + + V Sbjct: 411 DNVTEEEKKDRLHRLNAVVSEYSAKALKGLEGQTVEVLVEGSSKRRDDVLAGYTRKNRLV 470 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++ V+I + K +L GE V Sbjct: 471 NFKADPKFIGKLVNVKILEAKSYSLMGEFV 500 >gi|297191648|ref|ZP_06909046.1| methylase [Streptomyces pristinaespiralis ATCC 25486] gi|297151014|gb|EDY65490.2| methylase [Streptomyces pristinaespiralis ATCC 25486] Length = 503 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 179/456 (39%), Positives = 265/456 (58%), Gaps = 28/456 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84 + V++YGCQMNV+DS R+ + GY R + DAD++V NTC +RE A K+Y L Sbjct: 15 YEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKLYGNL 74 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+ +K+ R + + V GC+AQ + + I+ ++P V+VV G +LP LLERAR Sbjct: 75 GRLAPMKSRRP----GMQIAVGGCLAQKDRDTIVTKAPWVDVVFGTHNIGKLPVLLERAR 130 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + V+ S+E L R+ A+++I GC+ CTFC+VP RG E Sbjct: 131 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 185 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + I+GL R Sbjct: 186 DRRPGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGNIEGLER 242 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HPRD +D +I A + +MP LH+P+QSGSD ILK+M R + + II+++ Sbjct: 243 VRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTILKAMRRSYRQERFLGIIEKV 302 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P AIS+D IVGFPGET++DF TM V + +A AF+F+YS R GTP + M Q+ Sbjct: 303 RAAIPHAAISTDIIVGFPGETEEDFEQTMHTVREARFANAFTFQYSKRPGTPAATMDGQI 362 Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWL 435 + V E RL+ LQ+++ ++ N VG+ +EV++ E G++ G +L GR+P Sbjct: 363 PKEVVQERYMRLVALQEEISWEE---NKKQVGRTLEVMVAEGEGRKDGATHRLSGRAPDN 419 Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 + V + + GD++ V IT L E V Sbjct: 420 RLVHFTKPDAEVRPGDVVTVEITYAAPHHLLAEGAV 455 >gi|118618695|ref|YP_907027.1| hypothetical protein MUL_3378 [Mycobacterium ulcerans Agy99] gi|229890570|sp|A0PT87|MIAB_MYCUA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|118570805|gb|ABL05556.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length = 532 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 171/453 (37%), Positives = 264/453 (58%), Gaps = 24/453 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS RM + + GY R DAD++V NTC +RE A K+Y L Sbjct: 26 YQVRTYGCQMNVHDSERMAGLLEAAGYRRAAEGTDADVVVFNTCAVRENADNKLYGNLSH 85 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + D+ + V GC+AQ + + +LR++P V+VV G LP LL+RAR Sbjct: 86 L----APRKRTSPDMQIAVGGCLAQKDRDALLRKAPWVDVVFGTHNIGSLPALLDRARH- 140 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 RV + + + S+ R+ A+++I GC+ CTFC+VP RG EI RS Sbjct: 141 NRVAQVEIAEALQQFPSSLPSA---RESAYAAWVSISVGCNNTCTFCIVPSLRGKEIDRS 197 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 + ++ E + L+D GV EITLLGQNVNA+ L + F++LL + +I GL R Sbjct: 198 PADILAEVQSLVDTGVVEITLLGQNVNAYGVSFADPALPRNRGAFAELLRACGDIDGLER 257 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP + +D +I+A + P LH+P+QSGSDR+L++M R + A Y II+R+ Sbjct: 258 VRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERYLGIIERV 317 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P AI++D IVGFPGET+ DF AT+D+V + ++ AF+F+YS R GTP + + Q+ Sbjct: 318 RAAMPHAAITTDLIVGFPGETEQDFAATLDVVRQARFSAAFTFQYSKRPGTPAAELDGQL 377 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLVGRSPWL 435 + V + ERL+ LQ+++ + N A VGQ +E+L+ K ++ GR+ Sbjct: 378 PKAVVQERYERLVELQEQI---SLEGNRAIVGQRVELLVATGEGRKDTLTARMSGRARDG 434 Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 + V + + + GDI+ V +TD L + Sbjct: 435 RLVHFRAGDGPVRPGDIVTVEVTDAAPHHLIAD 467 >gi|313896795|ref|ZP_07830343.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral taxon 137 str. F0430] gi|320529997|ref|ZP_08031073.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas artemidis F0399] gi|312974712|gb|EFR40179.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral taxon 137 str. F0430] gi|320137794|gb|EFW29700.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas artemidis F0399] Length = 436 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 175/444 (39%), Positives = 260/444 (58%), Gaps = 15/444 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ + YGCQMN+ D+ RME S GY R DAD+I++NTC +RE A +KVY +G Sbjct: 5 RYKILVYGCQMNIADAERMEGQLQSVGYTRTEETADADVILINTCCVRESAEDKVYGKIG 64 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I+ LK + L+ +AGC+AQ EG+ +++R+P ++ V+G L ++ R Sbjct: 65 EIKKLK----ERNPHLIFGIAGCMAQKEGDNLMQRAPHIDFVLGTGKVQELTRIIAEIRA 120 Query: 146 GKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 VVDT E L I GG +A++ I GC+ FCTFC+VPY RG E S Sbjct: 121 EHSPVVDTVIG-NTIAENLPIARGG-----KFSAWVPIMYGCNNFCTFCIVPYVRGRERS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+ VV E R+ + G E+TLLGQNVN++ G D + F+DLL + E++G+ R+R Sbjct: 175 RTPEDVVAEVRRAVAEGYTEVTLLGQNVNSY---GKDHKAADFADLLRMVDEVEGIRRVR 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D+SD LI + L ++HLPVQ GS+RILK+MNR +T YR+ + R+R Sbjct: 232 FMTSHPKDISDKLIDTIRNGRHLCEHIHLPVQYGSNRILKAMNRVYTVESYRERVRRVRE 291 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+ ++++D IVGFPGET++DF AT+D + +I Y A++F YS R GTP + M +QV + Sbjct: 292 ALPEASLTTDLIVGFPGETEEDFAATLDFLREIRYDSAYTFLYSKRSGTPAARMEDQVPD 351 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443 +VK RL L ++ + N+ G +EV++E K + GR+ + V+ Sbjct: 352 DVKHARLNLLMEEQNKISRDINEKLAGTELEVMVEGESKNDPAVWSGRTRTNKIVLFPHG 411 Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467 GD + VRI + L GE+ Sbjct: 412 TEQAGDFVHVRIDRAQTWVLKGEI 435 >gi|288817802|ref|YP_003432149.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6] gi|288787201|dbj|BAI68948.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6] gi|308751400|gb|ADO44883.1| RNA modification enzyme, MiaB family [Hydrogenobacter thermophilus TK-6] Length = 433 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 172/432 (39%), Positives = 268/432 (62%), Gaps = 15/432 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++++K++GCQMN DS R++ M + GY+ +AD+I++NTC IREK +KV+S LG Sbjct: 2 KYYIKTFGCQMNFNDSERIKGMLQTLGYQEAKDWQEADIILINTCTIREKPDQKVFSHLG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + LK K L+ V GC+AQ G E++++SP+V+++ ++LPEL+++A+ Sbjct: 62 EYKKLKEQNPKA----LIGVCGCLAQRMGFELIQKSPVVDIMFSSFNMHQLPELIQQAQA 117 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G + V + D ++L D R A++T+ +GCDK CT+CVVP TRG + SR Sbjct: 118 GYKAVAILENPPDDEDKLW--DYPTVRDNPYCAYVTVMKGCDKNCTYCVVPKTRGRQRSR 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 SL ++ E R L+ +GV E+ LLGQNV AW GK + FS+LLY ++EI G+ R+R+ Sbjct: 176 SLESILKEVRDLVSDGVKEVHLLGQNVTAW-GKDIGKH---FSELLYRVAEIDGVERIRF 231 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TT HP+D+ + + KA G++ + ++HLP Q+GSDRILK M+R +T EY + I ++ Sbjct: 232 TTGHPKDLDEGIAKAMGEIKKVCEHIHLPFQAGSDRILKLMDRGYTKEEYLEKISMLKEY 291 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 I S+D IVGFP ET++DF T+D++ K+ + Q FSFK+SPR TP +M QV + Sbjct: 292 VKGITFSTDVIVGFPTETEEDFEETLDMLKKVRFEQVFSFKFSPRPDTPAYSMEGQVPDQ 351 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVVLNSK 443 VK +R+ L + +E + G I EVLIE +HG KL+GR+ + V + Sbjct: 352 VKTQRMSRLLQLQKEIMGEVAKSYEGTIQEVLIESIEHG---NKLIGRTRTNRWVSMEGG 408 Query: 444 NHNIGDIIKVRI 455 +G ++KV++ Sbjct: 409 VEMLGKVVKVKV 420 >gi|282600854|ref|ZP_05979919.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Subdoligranulum variabile DSM 15176] gi|282571154|gb|EFB76689.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Subdoligranulum variabile DSM 15176] Length = 447 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 180/452 (39%), Positives = 259/452 (57%), Gaps = 20/452 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P FV+SYGCQ NV D ++ + G+ ++++DADLI+ NTC +RE A ++V+ Sbjct: 8 TPPLAFVRSYGCQQNVNDGEKIRGVLQDVGFGICDTLEDADLILFNTCAVREHAEQRVFG 67 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140 +G ++ LK + L++ V GC+AQ E++ + P V++V G RLP +L Sbjct: 68 NIGALKKLKEQNPR----LIIGVCGCMAQQPHIVEKLRQSYPYVDLVFGVDGIDRLPAML 123 Query: 141 -ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 ER R GKR ++T E + I R G A+L I GCD FCT+C+VPY R Sbjct: 124 AERLRRGKRYLETPEQRNAVVEEMPI-----RRDSGFRAWLPIMYGCDNFCTYCIVPYVR 178 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR ++ E R LI G EITLLGQNVN++ GKGL G F+DLL L + G Sbjct: 179 GRERSREPDAILAEFRDLITKGYKEITLLGQNVNSY-GKGL-GNPIDFADLLNLLCAVPG 236 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 ++R+ TSHP+D S LI + ++HLPVQSGS+R+L+ MNR +T +Y ++ Sbjct: 237 DYQIRFMTSHPKDASRKLIDTIAAQPHMCKHIHLPVQSGSNRLLQQMNRHYTVEQYLDLV 296 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 D R+ P + SSD IVGFPGET++DF AT++LV K+GY Q F+F YS R GTP + M Sbjct: 297 DYARNKIPGVTFSSDIIVGFPGETEEDFEATLELVRKVGYMQLFTFIYSKRNGTPAAKM- 355 Query: 380 EQVDENVKAERLLCLQKKLREQ-QVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 D AE+ +++ LR Q +++F + GQ + VL+E G+ G + GR Sbjct: 356 --PDPTTHAEKAARMERLLRTQDEIAFAAIASMAGQNVRVLVEAAGRTPGTVNGRLDNNL 413 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + IG +V +T + + L GELV Sbjct: 414 VVEFPAPEMLIGQWARVNLTGSRAALLTGELV 445 >gi|154494340|ref|ZP_02033660.1| hypothetical protein PARMER_03695 [Parabacteroides merdae ATCC 43184] gi|154085784|gb|EDN84829.1| hypothetical protein PARMER_03695 [Parabacteroides merdae ATCC 43184] Length = 456 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 171/450 (38%), Positives = 270/450 (60%), Gaps = 19/450 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY + ++DAD I +NTC +R+ A +K+Y L Sbjct: 19 KKLFIETYGCQMNVADSEVVASIMKMDGYAVTDKIEDADAIFVNTCSVRDNAEQKIYGRL 78 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++LK + L++ V GC+A+ EE++ ++VVGP +Y LP L+ Sbjct: 79 QYFQSLKRKK----KSLVIGVLGCMAERVKEELIEVHH-ADLVVGPDSYMDLPNLVGAVE 133 Query: 145 FGKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G++ ++ + S ++ ++ + + GG + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 134 HGEKAINVELSTQETYKDVIPLKLGGVH----ISGFVSIMRGCNNFCTYCIVPYTRGRER 189 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +++E R + D G E+TLLGQNVN++ + +GEK +F LL ++E +R+ Sbjct: 190 SRDIESILNEIRDMRDKGFKEVTLLGQNVNSYLFEK-EGEKISFPALLKRVAEEVPEMRV 248 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP+DMSD + + D + +HLP QSGS RILK MNR++T Y I IR Sbjct: 249 RFTTSHPKDMSDETLHVIAEHDNICKMIHLPAQSGSSRILKVMNRKYTREWYLDRIAAIR 308 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQV 382 + PD AIS+D GF ET++D++ T+ L+ ++GY AF FKYS R GT + L + V Sbjct: 309 RILPDCAISTDLFCGFHSETEEDYQETLSLMREVGYDSAFLFKYSERPGTYAAQHLPDTV 368 Query: 383 DENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 E K RL + LQ +L E+ N +G++ EVLIE K + +L GR+ + V Sbjct: 369 SEEEKVRRLQGMIDLQNQLSEES---NKRDIGKVFEVLIEGFSKRSREQLFGRTSQNKVV 425 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + KN+ +G IKVRI +TL+G+ V Sbjct: 426 IFDKKNYRVGQFIKVRINRASSATLFGDPV 455 >gi|326443848|ref|ZP_08218582.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces clavuligerus ATCC 27064] Length = 497 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 178/457 (38%), Positives = 264/457 (57%), Gaps = 28/457 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKV 80 V + + +++YGCQMNV+DS R+ + GY R S DAD++V NTC +RE A K+ Sbjct: 3 VQRSYEIRTYGCQMNVHDSERLSGLLEEAGYVRAAEGSDGDADVVVFNTCAVRENADNKL 62 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 Y LGR+ +K R + + V GC+AQ + + I+ R+P V+VV G +LP LL Sbjct: 63 YGNLGRLAPMKTRRP----GMQIAVGGCLAQKDRDTIVSRAPWVDVVFGTHNIGKLPVLL 118 Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 ERAR + V+ S+E L R+ A+++I GC+ CTFC+VP R Sbjct: 119 ERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 173 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258 G E R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + I+ Sbjct: 174 GKEKDRRPGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGRIE 230 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R+T+ HPRD +D +I A + +MP LH+P+QSGSD +L++M R + + I Sbjct: 231 GLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDAVLRAMRRSYRQERFLGI 290 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ID++R P AIS+D IVGFPGET++DF T+ V + +A AF+F+YS R GTP + M Sbjct: 291 IDKVREAIPHAAISTDIIVGFPGETEEDFEQTLHTVREARFANAFTFQYSKRPGTPAATM 350 Query: 379 LEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGR 431 Q+ + V + ERL+ LQ+++ + N VG+++EV++ E G++ G +L GR Sbjct: 351 EGQLPKEVVQARYERLVVLQEEISWAE---NKKQVGRVLEVMVAEGEGRKDGATQRLSGR 407 Query: 432 SPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 +P + V + GD++ V IT L E Sbjct: 408 APDNRLVHFTKPEEEVRPGDVVTVEITYAAPHHLLAE 444 >gi|296393361|ref|YP_003658245.1| RNA modification enzyme, MiaB family [Segniliparus rotundus DSM 44985] gi|296180508|gb|ADG97414.1| RNA modification enzyme, MiaB family [Segniliparus rotundus DSM 44985] Length = 514 Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 169/476 (35%), Positives = 277/476 (58%), Gaps = 44/476 (9%) Query: 21 CIVPQ------RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74 C VP+ + ++++GCQMNV+DS R+ + + G+ + AD++V NTC +RE Sbjct: 17 CSVPEDHPANRTYELRTFGCQMNVHDSERLAGLLEADGHVKAEDGASADVVVFNTCAVRE 76 Query: 75 KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134 A +++Y LG +R +K + + + V GC+AQ +G+ +LRR+P V+VV G Sbjct: 77 NADDRLYGTLGHLRPIKEA----NPGMQIAVGGCLAQKDGDTVLRRAPWVDVVFGTHNMG 132 Query: 135 RLPELLERARFGK----RVVDTDYSVEDKF--ERLSIVDGGYNRKRGVTAFLTIQEGCDK 188 LP LL RAR + +VD+ + +R S+ G +++I GC+ Sbjct: 133 SLPALLRRARHNQAAQIEIVDSLQAFPSTLPSKRDSLHAG----------WVSIAVGCNN 182 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG----KGLDGEK 244 CTFC+VP RG ++ R+ ++V E R L+ GV E+TLLGQNVNA+ L ++ Sbjct: 183 TCTFCIVPSLRGKQLDRAPQEIVAEVRALVAEGVLEVTLLGQNVNAYGSSFADPALPRDR 242 Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 F+ LL S+ EI+GL R+R+T+ HP + ++ ++ A + + P+LH+P+QSGSDR+LK Sbjct: 243 GAFAKLLRSMGEIEGLERVRFTSPHPAEFTEDVVLAMAETPNVCPHLHMPLQSGSDRVLK 302 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 +M R + + +Y I+ R+R + PD AI++D IVGFPGET++DF+AT+D+V + +A A++ Sbjct: 303 AMRRSYRSAKYLGIVRRVRELLPDAAITTDIIVGFPGETEEDFQATLDVVAQARFASAYT 362 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE-- 419 F+YS R GTP + + +Q+D+ V AE RL+ LQ+++ ++ N+ +G+ E+L+ Sbjct: 363 FQYSKRPGTPAAELPDQIDKEVVAERYQRLVELQERICLEE---NEQQLGREAELLVSAP 419 Query: 420 ---KHGKEKGKLVGRS---PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 K + +L GRS + + GD ++VRI L GE V Sbjct: 420 HEGKKNAQTSRLSGRSRDGRLVHFLPPEGAQLRPGDFVRVRIAHAAPHHLIGEAVA 475 >gi|331011329|gb|EGH91385.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 351 Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 157/352 (44%), Positives = 222/352 (63%), Gaps = 8/352 (2%) Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178 R+P V+VV GPQT +RLPE+++ AR + VD + +KF+ L R G +A Sbjct: 4 RAPYVDVVFGPQTLHRLPEMIDAARITRLPQVDVSFPEIEKFDHLP-----EPRVDGPSA 58 Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238 ++++ EGC K+CTFCVVPYTRG E+SR V+ E L +NGV E+TLLGQNVN +RG Sbjct: 59 YVSVMEGCSKYCTFCVVPYTRGEEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGT 118 Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 DG +DL+ ++ + G+ R+RYTTSHP + SD LI+AH ++ L+ +LHLPVQSG Sbjct: 119 THDGRVADLADLIRVVAAVDGIDRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQSG 178 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 SDRIL +M R HT EY+ + ++R+ P I+ISSDFIVGFPGET+ DF TM L++ +G Sbjct: 179 SDRILAAMKRNHTTLEYKSRLRKLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVG 238 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + +FSF YSPR GTP +++ + E +K ERL LQ +L +Q + VG I +L+ Sbjct: 239 FDFSFSFVYSPRPGTPAADLKDDTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILV 298 Query: 419 EKHG-KEKGKLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468 + K+ G+L GR+ + V N IG V I D + +L G L+ Sbjct: 299 TDYSKKDPGELQGRTENNRIVNFRCNNPKLIGQFANVHIDDAQPHSLRGSLL 350 >gi|302542068|ref|ZP_07294410.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces hygroscopicus ATCC 53653] gi|302459686|gb|EFL22779.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces himastatinicus ATCC 53653] Length = 496 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 177/454 (38%), Positives = 266/454 (58%), Gaps = 29/454 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEKVYSF 83 + V++YGCQMNV+DS R+ + GY R +AD++V NTC +RE A ++Y Sbjct: 6 YEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGTGEGEADIVVFNTCAVRENADNRLYGN 65 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+ +K R + + V GC+AQ + + I++++P V+VV G LP LLERA Sbjct: 66 LGRLAPVKARRP----GMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGSLPVLLERA 121 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + V+ S+E L R+ A+++I GC+ CTFC+VP RG E Sbjct: 122 RVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKE 176 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + ++GL Sbjct: 177 KDRRPGDILAEVEALVAEGVTEITLLGQNVNAY---GSDIGDREAFSKLLRACGNVEGLE 233 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HPRD +D +I A + + +MP LH+P+QSGSD +LK+M R + Y II++ Sbjct: 234 RVRFTSPHPRDFTDDVIAAMAETENVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEK 293 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ PD AIS+D IVGFPGETD+DF T+ +V + +AQAF+F+YS R GTP + M Q Sbjct: 294 VRAAMPDAAISTDIIVGFPGETDEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQ 353 Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434 + + V + ERL+ LQ+++ ++ N VG+ +EVL+ E G++ +L GR+P Sbjct: 354 LPKAVVQERYERLVALQEEISWEE---NKKQVGRTLEVLVAEGEGRKDDATRRLSGRAPD 410 Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 + V + + GD++ V IT L E Sbjct: 411 NRLVHFTRPDEPVRPGDVVTVDITYAAPHHLLAE 444 >gi|317474690|ref|ZP_07933964.1| MiaB family RNA modification enzyme [Bacteroides eggerthii 1_2_48FAA] gi|316909371|gb|EFV31051.1| MiaB family RNA modification enzyme [Bacteroides eggerthii 1_2_48FAA] Length = 456 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 170/451 (37%), Positives = 271/451 (60%), Gaps = 20/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY +++++AD + +NTC IR+ A +K+ + L Sbjct: 19 KKLFIETYGCQMNVADSEVIASVMQMAGYFVADTLEEADAVFMNTCSIRDNAEQKILNRL 78 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK K+ +L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 79 EFFHSLK----KKKKNLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 133 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 188 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + DGE TF LL ++ VR Sbjct: 189 RSRDVESILNEVSDLVAKGYKEVTLLGQNVNSYRFEKADGEVITFPMLLRIVAGAAPGVR 248 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ ++ + ++HLPVQSGS RILK MNR++T Y + +D I Sbjct: 249 IRFTTSHPKDMSDETLQVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVDAI 308 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD +S+D GF ET++D + ++ L+++ GY AF FKYS R GT S L + Sbjct: 309 RRIVPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDD 368 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N CVG+ EVL+E K + +L GR+ + Sbjct: 369 VPEEVKIRRLNEIIALQNRLSAEA---NARCVGKTYEVLVEGVSKRSRDQLFGRTEQNRV 425 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + H +GD + V+IT+ +TL GE V Sbjct: 426 VVFDRGTHRVGDFVTVKITESSSATLKGEEV 456 >gi|126658288|ref|ZP_01729438.1| tRNA-i(6)A37 modification enzyme MiaB [Cyanothece sp. CCY0110] gi|126620437|gb|EAZ91156.1| tRNA-i(6)A37 modification enzyme MiaB [Cyanothece sp. CCY0110] Length = 430 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 179/441 (40%), Positives = 266/441 (60%), Gaps = 23/441 (5%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN DS RM + G++ + AD+I+ NTC IR+ A +KVYS+LGR + R Sbjct: 1 MNKADSERMAGILEDMGFQWSEDPNGADVILYNTCTIRDNAEQKVYSYLGR----QAKRK 56 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 E DL +VVAGCVAQ EGE+ILRR P +++V+GPQ RL +LL + G +VV T Sbjct: 57 HENPDLTLVVAGCVAQQEGEQILRRVPELDLVMGPQHANRLQDLLTQVFDGNQVVAT--- 113 Query: 156 VEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 E + IV+ +R VTA++ I GC++ C++CVVP RG+E SR+ + E Sbjct: 114 -----EPIHIVEDITKPRRDSTVTAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYQE 168 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGLVRLRYTT 267 L G EITLLGQN++A+ G+ L G + T +DLLY + +I G+ RLR+ T Sbjct: 169 MELLGKQGYKEITLLGQNIDAY-GRDLPGVTETGRHQHTLTDLLYQVHDISGIERLRFAT 227 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 SHPR ++ LIKA +L + + H+P QSG + +LK+M R +T +YR+IID+IR P Sbjct: 228 SHPRYFTERLIKACHELPKVCEHFHIPFQSGDNDVLKAMKRGYTHEKYRKIIDKIRQYMP 287 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D +IS+D IVGFPGET++ F T+ LVD IG+ Q + YSPR GTP + Q+ E +K Sbjct: 288 DASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAAIWDNQLSEEIK 347 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKNHN 446 ++RL L + ++ + + +I EVL+E ++ K+ +++GR+ + Sbjct: 348 SDRLQRLNHLVAQKAAQRSQRYLNRIEEVLVEDQNPKDNSQVMGRTRGNRLTFFKGDIDQ 407 Query: 447 I-GDIIKVRITDVKISTLYGE 466 + G +IKV+IT+V+ +L GE Sbjct: 408 LKGQLIKVKITEVRAFSLTGE 428 >gi|320140890|gb|EFW32737.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus MRSA131] Length = 514 Score = 302 bits (774), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ + + + GY+ ++ AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D+L+ V GC++Q E +IL+ V+++ G + LPE+LE A Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK L + DLL ++S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I + ++P++HLPVQSG++ +LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P E+++ F T+ L D++G+ A+++ YS R GTP + M + V Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 NVK ERL L KK+ GQ + VL E K+ + L G + + V + Sbjct: 419 LNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLSGYTDKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG +++VRI + K +L G + Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFI 504 >gi|296171751|ref|ZP_06852910.1| tRNA-I(6)A37 thiotransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893980|gb|EFG73745.1| tRNA-I(6)A37 thiotransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 495 Score = 302 bits (774), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 169/453 (37%), Positives = 263/453 (58%), Gaps = 25/453 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS R+ + + GY+R DAD++V NTC +RE A K+Y L Sbjct: 7 YQVRTYGCQMNVHDSERLAGLLEAAGYQRAVDGSDADVVVFNTCAVRENADNKLYGNLSH 66 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + ++ + V GC+AQ + + +LR++P V+VV G LP LLERAR Sbjct: 67 L----APRKRGNPEMQIAVGGCLAQKDRDAVLRKAPWVDVVFGTHNIGSLPTLLERARHN 122 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 K V+ S+++ L R+ A++++ GC+ CTFC+VP RG E+ R Sbjct: 123 KAAQVEIAESLQEFPSSLPSA-----RESAYAAWVSVSVGCNNSCTFCIVPSLRGKEVDR 177 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLV 261 S + V+ E R L+ +GV E+TLLGQNVNA+ L ++ F+ LL + I GL Sbjct: 178 SPADVLAEVRALVADGVVEVTLLGQNVNAYGVSFADPALPRDRGAFARLLRACGNIDGLE 237 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP + +D +I+A + P LH+P+QSGSDR+L++M R + A Y IIDR Sbjct: 238 RVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERYLGIIDR 297 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ P+ AI++D IVGFPGET++DF AT+D+V + +A AF+F+YS R GTP + + Q Sbjct: 298 VRAAMPNAAITTDLIVGFPGETEEDFAATLDVVRQARFAAAFTFQYSKRPGTPAAELDGQ 357 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLVGRSPW 434 + + V E RL+ LQ+++ + N A VGQ +E+L+ K ++ GR+ Sbjct: 358 LPKTVVQERYDRLIELQEQI---SLEGNRALVGQTVELLVAAGEGRKDTRTARMTGRARD 414 Query: 435 LQSVVLNSKNH-NIGDIIKVRITDVKISTLYGE 466 + V + + GD + +IT L + Sbjct: 415 GRLVHFGADDRVRPGDFVTAKITQAAPHHLIAD 447 >gi|294631817|ref|ZP_06710377.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. e14] gi|292835150|gb|EFF93499.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. e14] Length = 500 Score = 302 bits (773), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 175/457 (38%), Positives = 268/457 (58%), Gaps = 28/457 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKV 80 V + + +++YGCQMNV+DS R+ + GY R S DAD++V NTC +RE A ++ Sbjct: 55 VTRSYEIRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNRL 114 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 Y LG + K R + + V GC+AQ + + I++++P V+VV G +LP LL Sbjct: 115 YGNLGHLAPKKAKRP----GMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLL 170 Query: 141 ERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 ERAR + V+ S+E L R+ A+++I GC+ CTFC+VP R Sbjct: 171 ERARVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALR 225 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258 G E R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + ++ Sbjct: 226 GKEKDRRPGDILAEVEALVGEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGNVE 282 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R+T+ HPRD +D +I A + +MP LH+P+QSGSD +LK+M R + Y I Sbjct: 283 GLERVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGI 342 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I+++R+ P AI++D IVGFPGET++DF T+ +V + +AQAF+F+YS R GTP + M Sbjct: 343 IEKVRAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEM 402 Query: 379 LEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGR 431 +QV + V + ERL+ LQ+++ ++ N VG+ +E+++ E G++ G +L GR Sbjct: 403 DDQVPKEVVQARYERLVALQEEISWEE---NKKQVGRTLELMVAEGEGRKDGATHRLSGR 459 Query: 432 SPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 +P + V + + GD++ V IT L E Sbjct: 460 APDNRLVHFTKPDEEVRPGDVVTVEITYAAPHHLLAE 496 >gi|237739942|ref|ZP_04570423.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 2_1_31] gi|229421959|gb|EEO37006.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 2_1_31] Length = 435 Score = 302 bits (773), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 164/441 (37%), Positives = 266/441 (60%), Gaps = 16/441 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV +S +++ +F + GY+ DDAD + LNTC +RE AA +++ LG ++ L Sbjct: 8 TYGCQMNVNESAKIKKIFQNLGYDVTEETDDADAVFLNTCTVREGAATQIFGKLGELKAL 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K E ++ V GC AQ +GEE++R+ PI+++V+G Q R+P+ +E+ + Sbjct: 68 K-----EKKGTIIGVTGCFAQEQGEELVRKFPIIDIVMGNQNIGRIPQAIEKIENNESTH 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + ED E +D + + TA ++I GC+ FCTFC+VPY RG E S L ++ Sbjct: 123 EVYTDNED--ELPPRLDAEFASDQ--TASISITYGCNNFCTFCIVPYVRGRERSVPLEEI 178 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V + + ++ G EI LLGQNVN++ +G+ F+ LL + +++G +R+ + HP Sbjct: 179 VKDVEQYVNKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLEEICKVEGDYIVRFVSPHP 236 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 RD +D +I D + LHLP+QSGS ++L+ M R +T +Y ++D+I+S PD+A Sbjct: 237 RDFTDDVIDVIAKNDKISKCLHLPLQSGSSQVLRKMGRGYTKEKYLALVDKIKSKIPDVA 296 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 +++D IVGFPGET++DF T+D+V+K+ + ++ F YS R GT + M Q+DENVK ER Sbjct: 297 LTADIIVGFPGETEEDFLDTIDVVEKVSFDNSYMFMYSIRKGTKAATMDNQIDENVKKER 356 Query: 391 LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI- 447 L L + + + SFN++ +I+ VL+E K+ +++ +VL + N+ Sbjct: 357 LQRLME--VQNKCSFNESSKYKDKIVRVLVEGPSKKNKEVLSGRTSTNKIVLFKGDMNLK 414 Query: 448 GDIIKVRITDVKISTLYGELV 468 G + V+I + K TLYGELV Sbjct: 415 GQFVNVKINECKTWTLYGELV 435 >gi|29829021|ref|NP_823655.1| methylase of isopentenylated A37 derivatives in tRNA [Streptomyces avermitilis MA-4680] gi|81720067|sp|Q82KC4|MIAB_STRAW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|29606127|dbj|BAC70190.1| putative methylase of isopentenylated A37 derivatives in tRNA [Streptomyces avermitilis MA-4680] Length = 508 Score = 302 bits (773), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 175/453 (38%), Positives = 263/453 (58%), Gaps = 28/453 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84 + V++YGCQMNV+DS R+ + GY R S DAD++V NTC +RE A ++Y L Sbjct: 15 YEVRTYGCQMNVHDSERLSGLLEDAGYVRAPDGSDGDADVVVFNTCAVRENADNRLYGNL 74 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+ +K R + + V GC+AQ + + I+ ++P V+VV G +LP LLERAR Sbjct: 75 GRLAPMKTKRP----GMQIAVGGCLAQKDRDTIVTKAPWVDVVFGTHNIGKLPVLLERAR 130 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + V+ S+E L R+ A+++I GC+ CTFC+VP RG E Sbjct: 131 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 185 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + +I GL R Sbjct: 186 DRRTGDILAEIEALVGEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGQIDGLER 242 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HPRD +D +I A + +MP LH+P+QSGSD +LK+M R + Y II+++ Sbjct: 243 VRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPMQSGSDTVLKAMRRSYRQDRYLGIIEKV 302 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P AI++D IVGFPGET++DF TM V + + QAF+F+YS R GTP + M Q+ Sbjct: 303 RAAIPHAAITTDIIVGFPGETEEDFEQTMHAVREARFTQAFTFQYSKRPGTPAATMENQI 362 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWL 435 + V + ERL+ LQ+++ + N VG+ +E+++ E G++ G +L GR+P Sbjct: 363 PKEVVQARYERLVALQEEISWDE---NKKQVGRTLELMVAEGEGRKDGATHRLSGRAPDN 419 Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 + V + + GD++ V +T L E Sbjct: 420 RLVHFTKPDEEVRPGDVVTVEVTYAAPHHLLAE 452 >gi|319892314|ref|YP_004149189.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus pseudintermedius HKU10-03] gi|317162010|gb|ADV05553.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus pseudintermedius HKU10-03] gi|323464588|gb|ADX76741.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus pseudintermedius ED99] Length = 516 Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 264/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ M + + GY ++ AD+I+LNTC IRE A KV+ +G Sbjct: 72 FLIKTYGCQMNAHDTEVMAGILTALGYTPTEDVNTADVILLNTCAIRENAENKVFGEIGN 131 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++++K R D L+ V GC++Q E +IL+ V+++ G +RLP++LE A Sbjct: 132 LKHIKQER----PDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPQILEEAY 187 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 188 LSKAMVVEVWSKEGDVIENLPKV-----RQGRIKAWVNIMYGCDKFCTYCIVPFTRGKER 242 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++E R L G EITLLGQNVNA+ GK ++ + DLL +S+I + R+ Sbjct: 243 SRRPEDIIEEVRDLARQGYQEITLLGQNVNAY-GKDIEDLEYGLGDLLADISKID-IPRV 300 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I+ + ++P++HLPVQSG+D++LK M R++T Y ++ RI+ Sbjct: 301 RFTTSHPWDFTDRMIEVIAEGGNIVPHIHLPVQSGNDQVLKIMGRKYTRESYLDLVARIK 360 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PD+A+++D IVG+P ET+ F T+ L + +G+ A+++ YS R GTP + M + V Sbjct: 361 AAMPDVALTTDIIVGYPNETEAQFEETLSLYEAVGFEHAYTYLYSQRDGTPAAKMKDNVP 420 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442 +VK ERL L + + E A G+ + VL E K++ L G + + V + Sbjct: 421 TDVKKERLQRLNRLVGEYSSRALKAYEGETVRVLCEGASKKDEAVLAGYTEKNKLVNFRA 480 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG I+ V+I + K +L GE V Sbjct: 481 PKSVIGKIVDVKIVEAKQYSLNGEFV 506 >gi|118471123|ref|YP_887063.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium smegmatis str. MC2 155] gi|229890566|sp|A0QVX5|MIAB_MYCS2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|118172410|gb|ABK73306.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mycobacterium smegmatis str. MC2 155] Length = 512 Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 169/444 (38%), Positives = 265/444 (59%), Gaps = 26/444 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS R+ + S GY+R DAD++V NTC +RE A K+Y L Sbjct: 25 YQVRTYGCQMNVHDSERLSGLLESAGYQRAAEGTDADIVVFNTCAVRENADNKLYGNLSH 84 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + ++ + V GC+AQ + + +LRR+P V+VV G LP LLERAR Sbjct: 85 L----APRKQADPNMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLERARHN 140 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + V+ ++++ L +R+ A+++I GC+ CTFC+VP RG E+ R Sbjct: 141 REAQVEIVEALQEFPSALPA-----SRESAYAAWVSISVGCNNTCTFCIVPSLRGKEVDR 195 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLV 261 ++ E + L+D GV EITLLGQNVNA+ D E + F+ LL + I GL Sbjct: 196 RPGDILAEVQSLVDQGVLEITLLGQNVNAYGVSFADPELPRDRGAFAKLLRACGGIDGLE 255 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP + +D +I+A + P LH+P+QSGSDRILK+M R + A + IID+ Sbjct: 256 RVRFTSPHPAEFTDDVIEAMAATPNVCPTLHMPLQSGSDRILKAMRRSYRAERFLGIIDK 315 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ P AI++D IVGFPGET++DF+AT+D+V++ +A AF+F+YS R GTP ++M +Q Sbjct: 316 VRAAIPHAAITTDLIVGFPGETEEDFQATLDVVEQARFAGAFTFQYSKRPGTPAADMPDQ 375 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPW 434 + ++V E RL+ LQ+++ +Q N VG+ +E+L+ + ++ GR+ Sbjct: 376 LPKSVVTERYQRLIELQERISLEQ---NREQVGRAVELLVATGEGRKDASTARMSGRARD 432 Query: 435 LQSVVLNSKNHNI--GDIIKVRIT 456 + V ++ I GDI+ +T Sbjct: 433 GRLVHFLPGDNEIRPGDIVTTTVT 456 >gi|255011954|ref|ZP_05284080.1| SAM/TRAM family methylase protein [Bacteroides fragilis 3_1_12] gi|313149788|ref|ZP_07811981.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138555|gb|EFR55915.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 457 Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 170/451 (37%), Positives = 265/451 (58%), Gaps = 20/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD + +NTC IR+ A +K+ + L Sbjct: 18 KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++K K+ L+V V GC+A+ ++++ V++VVGP Y LPEL+ Sbjct: 78 EFFHSMK----KKKKHLIVGVLGCMAERVKDDLIEHHH-VDLVVGPDAYLTLPELIASVE 132 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G EITLLGQNVN++R + GE TF LL ++E VR Sbjct: 188 RSRDVESILNEVADLVSKGYKEITLLGQNVNSYRFEKEGGEVVTFPMLLRVVAEAAPDVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++T Y + I Sbjct: 248 VRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVSAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 + + PD +++D GF ET++D + ++ L++ GY AF FKYS R GT S LE Sbjct: 308 KRIVPDCGLTTDIFSGFHSETEEDHQESLSLMEACGYDAAFMFKYSERPGTYASKHLEDN 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N C+G+ EVL+E K + +L GR+ + Sbjct: 368 VPEEVKVRRLNEIIALQNRLSAES---NTRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + H IGD + VRIT+ +TL GE V Sbjct: 425 VVFDRGTHRIGDFVNVRITEASSATLKGEEV 455 >gi|329963728|ref|ZP_08301174.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides fluxus YIT 12057] gi|328527738|gb|EGF54730.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides fluxus YIT 12057] Length = 458 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 169/452 (37%), Positives = 269/452 (59%), Gaps = 20/452 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD + +NTC IR+ A +K+ + L Sbjct: 18 KKLFIETYGCQMNVADSEVIASVMQMAGYSVAGTLEEADAVFMNTCSIRDNAEQKILNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK + + L+V V GC+A+ ++++ V++VVGP Y LPEL+ Sbjct: 78 EFFHSLKKKKRR----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPELIAAVE 132 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 133 AGEKAMNVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L G E+TLLGQNVN++R + DG TF LL +++E +R Sbjct: 188 RSRDVESILNEVADLAQKGYKEVTLLGQNVNSYRFEKPDGAVVTFPMLLRTVAEAAPGMR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ D+ + ++HLPVQSGS RILK MNRR+T Y + + I Sbjct: 248 VRFTTSHPKDMSDETLQVIADMPNVCKHIHLPVQSGSSRILKLMNRRYTREWYLERVAAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD +S+D GF ET++D + ++ L+++ GY AF FKYS R GT S L + Sbjct: 308 RRIIPDCGLSTDIFSGFHSETEEDHQLSLSLMEECGYDAAFMFKYSERPGTYASKHLPDD 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N CVG+ EVL+E K + +L GR+ + Sbjct: 368 VPEEVKIRRLNEIIALQNRLSAEA---NARCVGRTYEVLVEGVSKRSRDQLFGRTEQNRV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 VV + H +GD + V++T+ +TL GE V+ Sbjct: 425 VVFDRGTHRVGDFVTVKVTESSSATLKGEEVL 456 >gi|258416055|ref|ZP_05682323.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A9763] gi|257839203|gb|EEV63679.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A9763] Length = 514 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 171/446 (38%), Positives = 265/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ + + + GY+ ++ AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D+L+ V GC++Q E +IL+ V+++ G + LPE+LE A Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V G + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKVCEG-----NIKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK L + DLL ++S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I + ++P++HLPVQSG++ +LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P E+++ F T+ L D++G+ A+++ YS R GTP + M + V Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 NVK ERL L KK+ GQ + VL E K+ + L G + + V + Sbjct: 419 LNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG +++VRI + K +L G V Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504 >gi|308233434|ref|ZP_07664171.1| RNA modification enzyme, MiaB family protein [Atopobium vaginae DSM 15829] Length = 455 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 175/455 (38%), Positives = 264/455 (58%), Gaps = 18/455 (3%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +V + + +K++GCQMN++DS R+ + G V + ++AD+++ TC +REKA +Y Sbjct: 7 LVGKTYLIKTFGCQMNLHDSERVAGLLDDCGANEVATFEEADIVIFMTCSVREKADTHLY 66 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 G + NL G ++ V GC+AQ +G ++ P V+VV G +PELL Sbjct: 67 ---GAVSNLVTLPPSPCGKRVIAVGGCIAQRDGAKLREHVPNVDVVFGTSALASVPELLC 123 Query: 142 RARFGKRVVDTDYSVEDKFE--RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 A + D D E R D R + A++ I GC+ FCTFC+VPY R Sbjct: 124 EAFES----NDDEVFVDTIEKNRGFSTDLPSKRDQSFHAWVPIMTGCNNFCTFCIVPYVR 179 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR L +VVDE R+L D+GV E+TLLGQNVN++ G+ L + C F++LL + E+ G Sbjct: 180 GRERSRVLERVVDEVRRLKDDGVREVTLLGQNVNSY-GRDLYKKPC-FAELLRKVGEV-G 236 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+T+S+P+D+SD I A + +MP LHL VQSGS RILK+M+R +T +Y ++I Sbjct: 237 IERIRFTSSNPKDLSDETIAAMAETPAVMPQLHLAVQSGSTRILKAMHRSYTREKYLEVI 296 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 D ++S PDIA+S+D IVGFPGET++DF T+ LV ++ Y+ AF+F YS R GTP +N+ Sbjct: 297 DHLKSAMPDIALSTDIIVGFPGETEEDFEETLSLVREVEYSSAFTFIYSKRPGTPAANIE 356 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438 + V +R L + E N + ++ L+E K+ LVG SP Q+V Sbjct: 357 DTTPHEVIQQRFNRLTDLIEELAYKANQKELHTLVTSLVEGTSKKDSHVLVGHSPKNQTV 416 Query: 439 VLN-----SKNHNIGDIIKVRITDVKISTLYGELV 468 + + S IG + +V + + K L G+L Sbjct: 417 LFSLPKDASAQDYIGKMCEVYVEEAKTWYLRGKLT 451 >gi|328944037|ref|ZP_08241502.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829] gi|327492006|gb|EGF23780.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829] Length = 460 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 175/455 (38%), Positives = 264/455 (58%), Gaps = 18/455 (3%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +V + + +K++GCQMN++DS R+ + G V + ++AD+++ TC +REKA +Y Sbjct: 12 LVGKTYLIKTFGCQMNLHDSERVAGLLDDCGANEVATFEEADIVIFMTCSVREKADTHLY 71 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 G + NL G ++ V GC+AQ +G ++ P V+VV G +PELL Sbjct: 72 ---GAVSNLVTLPPSPCGKRVIAVGGCIAQRDGAKLREHVPNVDVVFGTSALASVPELLC 128 Query: 142 RARFGKRVVDTDYSVEDKFE--RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 A + D D E R D R + A++ I GC+ FCTFC+VPY R Sbjct: 129 EAFES----NDDEVFVDTIEKNRGFSTDLPSKRDQSFHAWVPIMTGCNNFCTFCIVPYVR 184 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR L +VVDE R+L D+GV E+TLLGQNVN++ G+ L + C F++LL + E+ G Sbjct: 185 GRERSRVLERVVDEVRRLKDDGVREVTLLGQNVNSY-GRDLYKKPC-FAELLRKVGEV-G 241 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+T+S+P+D+SD I A + +MP LHL VQSGS RILK+M+R +T +Y ++I Sbjct: 242 IERIRFTSSNPKDLSDETIAAMAETPAVMPQLHLAVQSGSTRILKAMHRSYTREKYLEVI 301 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 D ++S PDIA+S+D IVGFPGET++DF T+ LV ++ Y+ AF+F YS R GTP +N+ Sbjct: 302 DHLKSAMPDIALSTDIIVGFPGETEEDFEETLSLVREVEYSSAFTFIYSKRPGTPAANIE 361 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438 + V +R L + E N + ++ L+E K+ LVG SP Q+V Sbjct: 362 DTTPHEVIQQRFNRLTDLIEELAYKANQKELHTLVTSLVEGTSKKDSHVLVGHSPKNQTV 421 Query: 439 VLN-----SKNHNIGDIIKVRITDVKISTLYGELV 468 + + S IG + +V + + K L G+L Sbjct: 422 LFSLPKDASAQDYIGKMCEVYVEEAKTWYLRGKLT 456 >gi|218281313|ref|ZP_03487801.1| hypothetical protein EUBIFOR_00366 [Eubacterium biforme DSM 3989] gi|218217498|gb|EEC91036.1| hypothetical protein EUBIFOR_00366 [Eubacterium biforme DSM 3989] Length = 477 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 176/446 (39%), Positives = 264/446 (59%), Gaps = 18/446 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +F+ +YGCQ N DS + + G+ + + +D+I++NTC IR+ A EKV L Sbjct: 42 KTYFISTYGCQANERDSETLAGILDELGFTPNETAEGSDVIIINTCAIRQNAEEKV---L 98 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G I N K +E DL++ V GC+AQ EG E +L + P V ++ G LP +L Sbjct: 99 GEIGNFKR-LYRENKDLIIGVCGCMAQEEGLVETLLTKYPQVRLLFGTHNIQELPSMLYS 157 Query: 143 ARF-GKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 F GK+VV YS E + +E L + +R A++ I GCDKFCT+C+VPYTRG Sbjct: 158 CMFEGKKVVKI-YSKEGEVYENLPV-----HRFGTFKAWVNIMYGCDKFCTYCIVPYTRG 211 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 + SR +S+++ E ++L D G EITLLGQNVNA+ GK +D E+ F+ LL +++I G+ Sbjct: 212 KQRSRKMSEILKEVQELKDEGYKEITLLGQNVNAY-GKDMDNEQ-DFATLLEEVAKI-GI 268 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP D S+ +I D +MP++HLP+QSG D +LK M RR+T Y + D Sbjct: 269 PRVRFTTSHPWDFSEQMIDVIAKYDNIMPFIHLPLQSGDDDVLKLMGRRYTKESYLALYD 328 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +I + P++A+S+D IVGFP ETD+ F T+D+V Y AF+F +S R GTP S M + Sbjct: 329 KIINTIPNVAVSTDIIVGFPNETDEQFEHTLDVVRYCKYDNAFTFIFSARPGTPASRMHD 388 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439 +D K +RL L K + + N A +G+ + VL++ K++ G + + V Sbjct: 389 SIDMETKRKRLARLNKTWNDLALEKNKAYIGRTVTVLVDGPSKKDENVYSGYTDTQKLVN 448 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465 +N GD ++V+I D K +L G Sbjct: 449 FKGENLQAGDFVEVKILDAKTFSLDG 474 >gi|282916552|ref|ZP_06324310.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus D139] gi|283770356|ref|ZP_06343248.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19] gi|282319039|gb|EFB49391.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus D139] gi|283460503|gb|EFC07593.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19] Length = 514 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 267/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ + + + GY+ + ++ AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVIAGILEALGYQATSDINTADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D+L+ V GC++Q E +IL+ V+++ G + LPE+LE A Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK L + DLL ++S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I + ++P++HLPVQSG++ +LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P E+++ F T+ L D++G+ A+++ YS R GTP + M + V Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 +VK ERL L KK+ GQ + VL E K+ + L G + + V + Sbjct: 419 LDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG +++VRI + K +L G V Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504 >gi|329733662|gb|EGG69990.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus 21193] Length = 514 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ + + + GY+ ++ AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVIAGILKALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D+L+ V GC++Q E +IL+ V+++ G + LPE+LE A Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK L + DLL ++S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I + ++P++HLPVQSG++ +LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P E+++ F T+ L D++G+ A+++ YS R GTP + M + V Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 +VK ERL L KK+ GQ + VL E K+ + L G + + V + Sbjct: 419 LDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG +++VRI + K +L G V Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504 >gi|292669800|ref|ZP_06603226.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC 43541] gi|292648597|gb|EFF66569.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC 43541] Length = 444 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 163/445 (36%), Positives = 261/445 (58%), Gaps = 14/445 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ + YGCQMN+ D+ RME + GY R +AD+I++NTC +RE A +KVY +G Sbjct: 11 RYKILVYGCQMNIADAERMEGQLQAAGYARTEETANADIILINTCCVRETAEDKVYGKIG 70 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 ++ +K K L+ +AGC+AQ EG+ ++RR+P ++ V+G L ++ R Sbjct: 71 EVKKIKEKNPK----LIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIRA 126 Query: 146 GKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 VVD S + E L + GG +A++ I GC+ +CT+C+VPY RG E S Sbjct: 127 EHSPVVDVALSDSEIAEDLPVARGG-----KFSAWVPIMYGCNNYCTYCIVPYVRGRERS 181 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+ +VV E R+ + G E+TLLGQNVN++ G D ++ F+DLL + E++G+ R+R Sbjct: 182 RAPEEVVAEVRRAVAEGYREVTLLGQNVNSY---GKDHKEADFADLLRMVDEVEGIRRVR 238 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D+SD LI + ++HLPVQ GS R+LK+MNR +T +YR+ R+R Sbjct: 239 FMTSHPKDISDKLIDTIKSGAHICEHIHLPVQYGSSRLLKAMNRGYTVEKYRERALRVRE 298 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+ ++++D IVGFPGET++DF + + ++ Y A++F YS R GTP + M QV + Sbjct: 299 ALPEASLTTDLIVGFPGETEEDFAQMLAFLREMRYDSAYTFLYSKRSGTPAATMANQVAD 358 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVLNSK 443 +VK RL L ++ + N+ +G +E+++E K ++ GR+ + V+ Sbjct: 359 DVKHARLNRLMEEQNAISRAINERLMGAELEIMVEGASKNDPRVWSGRTRTNKIVLFPHG 418 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 GD ++V+I + L GE+V Sbjct: 419 AEREGDFVRVKINQPQTWLLKGEVV 443 >gi|283470508|emb|CAQ49719.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus ST398] Length = 514 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ + + + GY+ ++ AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D+L+ V GC++Q E +IL+ V+++ G + LPE+LE A Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK L + DLL ++S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I + ++P++HLPVQSG++ +LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P E+++ F T+ L D++G+ A+++ YS R GTP + M + V Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 +VK ERL L KK+ GQ + VL E K+ + L G + + V + Sbjct: 419 LDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG +++VRI + K +L G V Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504 >gi|269940783|emb|CBI49165.1| radical SAM superfamily protein [Staphylococcus aureus subsp. aureus TW20] Length = 514 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 265/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ + + + GY+ ++ AD+I++NTC IRE A KV S +G Sbjct: 70 FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVLSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D+L+ V GC++Q E +IL+ V+++ G + LPE+LE A Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK L + DLL ++S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I + ++P++HLPVQSG++ +LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P E+++ F T+ L D++G+ A+++ YS R GTP + M + V Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 NVK ERL L KK+ GQ + VL E K+ + L G + + V + Sbjct: 419 LNVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG +++VRI + K +L G + Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFI 504 >gi|49483455|ref|YP_040679.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus aureus subsp. aureus MRSA252] gi|253731911|ref|ZP_04866076.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257425346|ref|ZP_05601771.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus 55/2053] gi|257428007|ref|ZP_05604405.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430640|ref|ZP_05607022.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433400|ref|ZP_05609758.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus E1410] gi|257436242|ref|ZP_05612289.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus M876] gi|258423867|ref|ZP_05686752.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A9635] gi|282903847|ref|ZP_06311735.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus C160] gi|282905610|ref|ZP_06313465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus Btn1260] gi|282908586|ref|ZP_06316416.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910864|ref|ZP_06318667.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus WBG10049] gi|282914069|ref|ZP_06321856.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp. aureus M899] gi|282918991|ref|ZP_06326726.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus C427] gi|282924114|ref|ZP_06331790.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus C101] gi|283958035|ref|ZP_06375486.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus A017934/97] gi|293501101|ref|ZP_06666952.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus 58-424] gi|293510063|ref|ZP_06668771.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus M809] gi|293526649|ref|ZP_06671334.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp. aureus M1015] gi|295427779|ref|ZP_06820411.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591263|ref|ZP_06949901.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus MN8] gi|81651243|sp|Q6GHE3|MIAB_STAAR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|49241584|emb|CAG40270.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|253724321|gb|EES93050.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257271803|gb|EEV03941.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus 55/2053] gi|257274848|gb|EEV06335.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278768|gb|EEV09387.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281493|gb|EEV11630.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus E1410] gi|257284524|gb|EEV14644.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus M876] gi|257845896|gb|EEV69925.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus A9635] gi|282314086|gb|EFB44478.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus C101] gi|282316801|gb|EFB47175.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus C427] gi|282322137|gb|EFB52461.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp. aureus M899] gi|282325469|gb|EFB55778.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus WBG10049] gi|282327648|gb|EFB57931.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330902|gb|EFB60416.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus Btn1260] gi|282595465|gb|EFC00429.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus C160] gi|283790184|gb|EFC29001.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus A017934/97] gi|290920721|gb|EFD97784.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp. aureus M1015] gi|291096106|gb|EFE26367.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus 58-424] gi|291467007|gb|EFF09525.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus M809] gi|295128137|gb|EFG57771.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576149|gb|EFH94865.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus MN8] gi|298694584|gb|ADI97806.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] gi|302332898|gb|ADL23091.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus aureus subsp. aureus JKD6159] gi|312438327|gb|ADQ77398.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus TCH60] gi|315194179|gb|EFU24572.1| hypothetical protein CGSSa00_05748 [Staphylococcus aureus subsp. aureus CGS00] gi|323441074|gb|EGA98781.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus aureus O11] Length = 514 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ + + + GY+ ++ AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D+L+ V GC++Q E +IL+ V+++ G + LPE+LE A Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK L + DLL ++S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I + ++P++HLPVQSG++ +LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P E+++ F T+ L D++G+ A+++ YS R GTP + M + V Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 +VK ERL L KK+ GQ + VL E K+ + L G + + V + Sbjct: 419 LDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG +++VRI + K +L G V Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504 >gi|284992297|ref|YP_003410851.1| RNA modification enzyme, MiaB family [Geodermatophilus obscurus DSM 43160] gi|284065542|gb|ADB76480.1| RNA modification enzyme, MiaB family [Geodermatophilus obscurus DSM 43160] Length = 483 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 165/412 (40%), Positives = 245/412 (59%), Gaps = 18/412 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS R+ + + GY +DAD++VLNTC +RE A ++Y LG Sbjct: 12 YRVRTYGCQMNVHDSERLSGLLEAAGYAAAPEGEDADVVVLNTCAVRENADNRLYGNLGH 71 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R +K+ R + + V GC+AQ + EI+RR+P V+VV G LP LLERAR Sbjct: 72 LRPVKDGRPG----MQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNVGSLPALLERARH- 126 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + VE E L + KR + +++I GC+ CTFC+VP RG E Sbjct: 127 ----NAEAQVEIA-EALEVFPSTLPAKRDSAYSGWVSISVGCNNTCTFCIVPALRGKERD 181 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +++ E + L+D GV E+TLLGQNVNA+ + D + F+DLL + I GL R+R Sbjct: 182 RRPGEILAEVQALVDQGVLEVTLLGQNVNAYGVEFRD--RGAFADLLRATGRIDGLERVR 239 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HPR+ +D +I A + + LH+P+QSGSD +L+ M R + Y IIDR+R+ Sbjct: 240 FTSPHPREFTDDVITAMAETPAVCHQLHMPLQSGSDDVLRRMRRGYRQDRYLGIIDRVRA 299 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD AI++D IVGFPGET+ DF T+D+V + ++ AF+F+YS R GTP + M Q+ + Sbjct: 300 AMPDAAITTDIIVGFPGETEADFEQTLDVVRQARFSSAFTFQYSKRPGTPAAGMEGQLPK 359 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432 V ER L L E + N A VG+ +E+L+ ++G+L GR+ Sbjct: 360 EVVQERYLRLTALQDEISWAENRAQVGRTVELLVAAGEGSKDAQRGRLSGRA 411 >gi|82750892|ref|YP_416633.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus aureus RF122] gi|123727480|sp|Q2YXS2|MIAB_STAAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|82656423|emb|CAI80843.1| conserved hypothetical protein [Staphylococcus aureus RF122] Length = 514 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ + + + GY+ ++ AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D+L+ V GC++Q E +IL+ V+++ G + LPE+LE A Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK L + DLL ++S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I + ++P++HLPVQSG++ +LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P E+++ F T+ L D++G+ A+++ YS R GTP + M + V Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 +VK ERL L KK+ GQ + VL E K+ + L G + + V + Sbjct: 419 LDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG +++VRI + K +L G V Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504 >gi|323443943|gb|EGB01554.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus aureus O46] Length = 514 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 266/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ + + + GY+ ++ AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVIAGILDALGYQATTDINTADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D+L+ V GC++Q E +IL+ V+++ G + LPE+LE A Sbjct: 130 LKHLK----KERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK L + DLL ++S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYKEITLLGQNVNSY-GKDLQDIEYDLGDLLQAISKI-AIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I + ++P++HLPVQSG++ +LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P E+++ F T+ L D++G+ A+++ YS R GTP + M + V Sbjct: 359 DRIPNVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 +VK ERL L KK+ GQ + VL E K+ + L G + + V + Sbjct: 419 LDVKKERLQRLNKKVGHYSQIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG +++VRI + K +L G V Sbjct: 479 PKEMIGKLVEVRIDEAKQYSLNGSFV 504 >gi|258511464|ref|YP_003184898.1| RNA modification enzyme, MiaB family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478190|gb|ACV58509.1| RNA modification enzyme, MiaB family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 497 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 169/448 (37%), Positives = 264/448 (58%), Gaps = 14/448 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P RF +++YGCQMN +D+ M + + GYE + ++AD I+ NTC +RE A EKV+ Sbjct: 54 PYRFLIRTYGCQMNEHDTEVMAGLLTAMGYEPTHDAEEADFILFNTCAVRENAEEKVFGE 113 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS--PIVNVVVGPQTYYRLPELLE 141 +GR+R LK ++ +L+ + GC+AQ +G + + R P +++V G +RLP LL Sbjct: 114 IGRLRPLK----RQNPELIFGLCGCMAQEKGVQRMVREKYPWIDLVFGTHNIHRLPALLF 169 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 AR + V V D ++ D RK V A++ +Q GC+KFCT+C+VPYTRG+ Sbjct: 170 AARASQETV---MEVWDNAPE-TVEDWPKLRKDRVRAWVNVQYGCNKFCTYCIVPYTRGV 225 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR V+ E +L+ G +ITLLGQNVN + G+D F+ LL ++ + G+ Sbjct: 226 ERSRLPEDVLREVAELVQEGYQDITLLGQNVNDY---GVDLGTTNFARLLRQVNAVPGVG 282 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R+TTS+P + +D LI A + + ++ ++HLPVQSG++ IL+ MNR HT Y +++D+ Sbjct: 283 WIRFTTSNPWNFTDELIDAIAESENVVEHIHLPVQSGNNEILRRMNRSHTREYYLRLVDK 342 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IRS P ++I++D IVGFPGET+ F+ T+ LV ++ + AF+F YSPR TP + + Sbjct: 343 IRSRIPGVSITTDLIVGFPGETEAHFQDTLRLVREVEFDNAFTFIYSPRENTPAARWNDD 402 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 K ERL+ L + E N+ G ++EVL++ K L GR+ + V+ Sbjct: 403 TPLEEKKERLMRLNEVQNEISRRHNEKLRGTLLEVLVDGESKTNPDVLSGRTRTNKLVLF 462 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG I+VR+T+ + L GE+ Sbjct: 463 RGDKSLIGQRIRVRVTEPQTFLLKGEIA 490 >gi|229025211|ref|ZP_04181635.1| hypothetical protein bcere0029_35140 [Bacillus cereus AH1272] gi|228736144|gb|EEL86715.1| hypothetical protein bcere0029_35140 [Bacillus cereus AH1272] Length = 425 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 173/429 (40%), Positives = 254/429 (59%), Gaps = 15/429 (3%) Query: 44 MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103 M +F + GYE S +DAD+++LNTC IRE A KV+ LG +++LK + DLL+ Sbjct: 1 MAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGHLKSLK----RRNPDLLI 56 Query: 104 VVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE-DKF 160 V GC++Q E +I++++ V++V G +RLP +L+ A F K V +S E D Sbjct: 57 GVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVI 116 Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220 E L V R+ + A++ I GCDKFCT+C+VPYTRG E SR ++ E R L N Sbjct: 117 ENLPKV-----RRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAAN 171 Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280 G EITLLGQNVNA+ GK + + DL+ L ++ + R+R+TTSHPRD D LI+ Sbjct: 172 GYKEITLLGQNVNAY-GKDFEDFEYGLGDLMDELRKVD-IARIRFTTSHPRDFDDHLIEV 229 Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340 G L+ ++HLPVQSGS +LK M R+++ Y +++ +I+ P+ ++D IVGFP Sbjct: 230 LGKAGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVFTTDIIVGFP 289 Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400 ETD+ F TM L ++G+ AF+F YSPR GTP + M + V VK ERL L + Sbjct: 290 NETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNT 349 Query: 401 QQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459 + N+ GQI+EVL++ K + L G + + V + IG ++KV++T+ K Sbjct: 350 LAIEKNNRYKGQIVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVTEAK 409 Query: 460 ISTLYGELV 468 +L GELV Sbjct: 410 TWSLNGELV 418 >gi|258654111|ref|YP_003203267.1| RNA modification enzyme, MiaB family [Nakamurella multipartita DSM 44233] gi|258557336|gb|ACV80278.1| RNA modification enzyme, MiaB family [Nakamurella multipartita DSM 44233] Length = 508 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 161/413 (38%), Positives = 244/413 (59%), Gaps = 20/413 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + GY + D AD++V NTC +RE A K+Y LG Sbjct: 11 YQVRTFGCQMNVHDSERLSGLLEGAGYRAADDGDPADVVVFNTCAVRENADNKLYGNLGH 70 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + ++K R + + V GC+AQ + EI+RR+P V+VV G LP LLERAR Sbjct: 71 LASVKAKRPG----MQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNVGSLPTLLERARH- 125 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + + + L + KR +++I GC+ CTFC+VP RG E Sbjct: 126 -----YEQAQVEILDALEVFPSSLPAKRDSHYAGWVSISVGCNNTCTFCIVPSLRGKEAD 180 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263 R V+ E + L+D+GV E+TLLGQNVN++ G+ G++ F LL + I GL R+ Sbjct: 181 RRPGDVLAEVQMLVDDGVLEVTLLGQNVNSY---GVQFGDRQAFGKLLRACGAIDGLERV 237 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP+D + +I+A + LH+P+QSGSDR+LK+M R + + Y I+D +R Sbjct: 238 RFTSPHPKDFTPDVIEAMAQTPNVCHQLHMPLQSGSDRVLKAMRRSYRSTRYLAILDEVR 297 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PD AI++D IVGFPGETD+DF T+D+V + +A AF+F+YSPR GTP + + +QV Sbjct: 298 AAMPDAAITTDIIVGFPGETDEDFEQTLDVVRRSRFAGAFTFQYSPRPGTPAATLPDQVP 357 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432 V AER L + + E ++ N VG+ +E+L+ + G+L GR+ Sbjct: 358 PEVVAERFGRLTEIVTESALTENQRQVGRTVELLVSAGEGRKDNSSGRLTGRA 410 >gi|33240828|ref|NP_875770.1| 2-methylthioadenine synthetase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81664182|sp|Q7VAS5|MIAB_PROMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|33238357|gb|AAQ00423.1| 2-methylthioadenine synthetase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 466 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 173/455 (38%), Positives = 269/455 (59%), Gaps = 25/455 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM + + GY++ + ADL++ NTC IR+ A +KVYS+LGR Sbjct: 23 YWITTFGCQMNKADSERMAGILQAMGYQKAKTELCADLVLYNTCTIRDNAEQKVYSYLGR 82 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R K L +VVAGCVAQ EGE +LRR P +++V+GPQ RL +LL + G Sbjct: 83 ----QAIRKKSSPHLKLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLEDLLNQVDNG 138 Query: 147 KRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++VV T+ E L + D R + A++ + GC++ CT+CVVP RG E SR Sbjct: 139 QQVVATE-------EHLILEDLTAARRDSNICAWVNVIYGCNERCTYCVVPSVRGKEQSR 191 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKG 259 + E L G E+TLLGQN++A+ G+ L G + T +DLLY + +I G Sbjct: 192 EPKAIKLEIEDLAKKGFKEVTLLGQNIDAY-GRDLPGISSSGRRENTLTDLLYFIHDING 250 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+ TSHPR + LI+A +L L + H+P QSG + +LK M R +T +YR+II Sbjct: 251 INRIRFATSHPRYFTTRLIEACAELPKLCEHFHIPFQSGDNEVLKRMGRGYTIEKYRRII 310 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 D+IR + P+ +ISSD IV FPGE + F+ T+ ++ +IG+ Q + YS R TP ++ Sbjct: 311 DKIRELMPNSSISSDVIVAFPGEDESQFQNTLKIIREIGFDQVNTAAYSQRPNTPAASWA 370 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS-----P 433 EQ+ E+VK +RL L + + N QI+EVL E + K + +L+GR+ Sbjct: 371 EQLPESVKIDRLKELNLLVEQTAKDKNTRYHNQIVEVLAEGINPKNQEQLMGRTRTNRLT 430 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + ++N GD++KV+I++++ +L G + Sbjct: 431 FFSKIGPKKYSYNPGDLVKVKISEIRAFSLTGSPI 465 >gi|302558013|ref|ZP_07310355.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoflavus Tu4000] gi|302475631|gb|EFL38724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoflavus Tu4000] Length = 505 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 179/456 (39%), Positives = 264/456 (57%), Gaps = 28/456 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84 + V++YGCQMNV+DS R+ + GY R S DAD++V NTC +RE A K+Y L Sbjct: 16 YEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNKLYGNL 75 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G + K SR + + V GC+AQ + + I++R+P V+VV G +LP LLERAR Sbjct: 76 GHLAPKKASRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 131 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + V+ S+E L R+ A+++I GC+ CTFC+VP RG E Sbjct: 132 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + +I GL R Sbjct: 187 DRRTGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGKIDGLER 243 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HPRD +D +I A + +MP LH+P+QSGSD +LK+M R + Y II+++ Sbjct: 244 VRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKV 303 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P AIS+D IVGFPGET++DF T+ +V + +AQAF+F+YS R GTP + M Q+ Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRSPWL 435 + V + ERL+ LQ+ + ++ N VG+ +E+++ E G++ +L GR+P Sbjct: 364 PKKVVQERYERLVELQEAISWEE---NKKQVGRTLELMVAEGEGRKDDATHRLSGRAPDS 420 Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 + V + GD++ V IT L E V Sbjct: 421 RLVHFTKPEQEVRPGDVVTVEITYAAPHHLLAEGAV 456 >gi|262202141|ref|YP_003273349.1| RNA modification enzyme, MiaB family [Gordonia bronchialis DSM 43247] gi|262085488|gb|ACY21456.1| RNA modification enzyme, MiaB family [Gordonia bronchialis DSM 43247] Length = 528 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 160/417 (38%), Positives = 245/417 (58%), Gaps = 22/417 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS R+ + GY R D ADL+V NTC IRE A K+Y L Sbjct: 32 YQVRTYGCQMNVHDSERIAGLLEDAGYVRAAEDDAADLVVFNTCAIRENADNKLYGNLSH 91 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + +K+ R + + V GC+AQ + + +L+R+P V+VV G LP LL+RAR Sbjct: 92 LAPVKSRRPG----MQIAVGGCLAQKDKDTVLKRAPWVDVVFGTHNIGSLPALLDRARHN 147 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + D ER R + ++++ GC+ CTFC+VP RG E+ R Sbjct: 148 DAA---EVEILDALERFPSTLPA-KRDSAYSGWVSVSVGCNNTCTFCIVPSLRGKEVDRR 203 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLVR 262 ++ E L+D GV E+TLLGQNVNA+ D E + F+DLL + I GL R Sbjct: 204 PGDILAEVTALVDQGVLEVTLLGQNVNAYGMSFADPELPRDRGAFADLLRACGRIDGLER 263 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP + +D +I A + P LH+P+QSGSDR+L++M R + + I+D++ Sbjct: 264 VRFTSPHPAEFTDDVIDAMAQTPNVCPQLHMPLQSGSDRVLRAMRRSYRRTRFLGILDKV 323 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P AI++D IVGFPGET++DF T+D+V++ ++ AF+F+YSPR GTP + M +QV Sbjct: 324 RAAMPHAAITTDIIVGFPGETEEDFAETLDVVEQARFSSAFTFQYSPRPGTPAATMPDQV 383 Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI----EKHGKEKGKLVGRS 432 V +E RL+ LQ+++ +S N++ VG +E+L+ + G+L GR+ Sbjct: 384 PPEVVSERYQRLIALQERI---CLSENESLVGSAVELLVVDDDGRKSARTGRLTGRA 437 >gi|119489699|ref|ZP_01622458.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106] gi|119454436|gb|EAW35585.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106] Length = 452 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 176/456 (38%), Positives = 276/456 (60%), Gaps = 23/456 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+R+ + ++GCQMN DS RM + G ++AD+++ NTC IR+ A KVYS Sbjct: 4 TPRRYHITTFGCQMNKADSERMAGILEEMGLLFTADPNEADVVLYNTCTIRDNAEHKVYS 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +LGR + R + +L +++AGCVAQ EG+ +LRR P +++V+GPQ RL ELLE+ Sbjct: 64 YLGR----QAKRKHKQPNLTLILAGCVAQQEGQTLLRRVPELDLVMGPQHANRLQELLEQ 119 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRG 200 G +VV T E + IV+ +R VTA++ + GC++ CT+CVVP RG Sbjct: 120 VDEGNQVVAT--------EPIHIVEDITKPRRDSNVTAWVNVIYGCNERCTYCVVPNVRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSL 254 IE SR+ + E +L G EITLLGQN++A+ G+ L G K T +DLL + Sbjct: 172 IEQSRTPEAIRSEMEELGRLGYKEITLLGQNIDAY-GRDLPGSTPEGRHKHTLTDLLSFV 230 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 ++ G+ RLR+ TSHPR ++ LIKA +L + + H+P QSG ++ILK+M+R +T + Sbjct: 231 HDVPGIERLRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNQILKAMSRGYTHEK 290 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 YR+II+ +R PD +IS+D IVGFPGET++ F T+ LVD IG+ + YSPR GTP Sbjct: 291 YRRIINTVREYMPDASISADAIVGFPGETEEQFENTLKLVDDIGFDLLNTAAYSPRPGTP 350 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP 433 + QV ++VKA+RL L + + + G+I EVL+E ++ ++ +++GR+ Sbjct: 351 AALWENQVPDDVKADRLQQLNHLVGVKAAERSQRYFGRIEEVLVEGENPRDPSQVMGRTR 410 Query: 434 WLQ-SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + + + G ++KV++T+V+ +L E + Sbjct: 411 GNRLTFFVGNLAELKGKVLKVKVTEVRPFSLTAEAI 446 >gi|219668765|ref|YP_002459200.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfitobacterium hafniense DCB-2] gi|219539025|gb|ACL20764.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfitobacterium hafniense DCB-2] Length = 447 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 162/447 (36%), Positives = 261/447 (58%), Gaps = 14/447 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP++ +YGCQM+ D+ + ++ +GY R ++ ADLI++NTC +RE A K+ Sbjct: 6 VPKKVVTLAYGCQMSERDADTLTEISSQKGYVRSQELEQADLIIVNTCCVRESAENKILG 65 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140 +G +++LK + + L + ++GC+ Q G E + +R+P V++ G + LL Sbjct: 66 KIGELKHLKEANPQ----LKIAISGCMVQQPGALERLRKRAPHVDIWAGTHNIHEFQRLL 121 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 E A +V + + E + + G + A++ I GC+ FCT+C+VP+ RG Sbjct: 122 EEAEEKGKVAEVWEKPRETQESVLLAAKG-----KLKAYVNISYGCNNFCTYCIVPHVRG 176 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR +++ E R L++ G E+TLLGQNVN++ G+ LD F+DLL + I GL Sbjct: 177 RERSRQPEEILAEIRALVETGCREVTLLGQNVNSY-GQDLD-RAYDFADLLKDVDSIDGL 234 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHP+D+SD LI+ L ++HLP Q+GSD ILK MNR++T Y I Sbjct: 235 WRVRFMTSHPKDLSDKLIETIAAGTHLCEHIHLPFQAGSDEILKGMNRKYTREYYLSRIA 294 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +I+++ P +++++D IVGFPGET++DF T+ L+ ++ Y+QAF+F YS R GTP + M E Sbjct: 295 QIKAIIPQVSLTTDIIVGFPGETEEDFEQTLALIRQVKYSQAFTFMYSKRSGTPAAQMAE 354 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439 Q+ ++K RL L Q +++ +G+ EVL+E K +L GR+ + VV Sbjct: 355 QIPLDIKKRRLQQLITVQNAQSLAWRQEMIGKTCEVLVEGPSKSNPDRLTGRTRGYELVV 414 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGE 466 + IG +++V I D TL+GE Sbjct: 415 FPGEAQLIGTLVQVLIQDANSWTLFGE 441 >gi|299535293|ref|ZP_07048616.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus fusiformis ZC1] gi|298729275|gb|EFI69827.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus fusiformis ZC1] Length = 517 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 171/448 (38%), Positives = 262/448 (58%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + + +YGCQMN +D+ M +F GY +++AD+++LNTC IRE A KV+ L Sbjct: 71 KSYHIMTYGCQMNEHDTEVMAGIFMQLGYTPTEVIEEADVVLLNTCAIRENAENKVFGEL 130 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G + K ++ ++L+ V GC++Q E +ILR P V++V G +RLP +L+ Sbjct: 131 GFLLKYK----RKNPEMLIGVCGCMSQEESVVNKILRSYPHVDMVFGTHNIHRLPNILKE 186 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L R + A++ I GCDKFCT+C+VPYTRG Sbjct: 187 AYMSKEMVIEVWSKEGDVIENLP-----KKRLGSIKAWVNIMYGCDKFCTYCIVPYTRGK 241 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++ E R+L G EI LLGQNVNA+ GK + DL+ L +I + Sbjct: 242 ERSRRPEEIIAEVRELAAAGYKEIMLLGQNVNAY-GKDFEDIDYRLGDLMDELRKID-IP 299 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS+ +LK M R++T + ++DR Sbjct: 300 RIRFTTSHPRDFDDHLIEVLAKRGNLVEHIHLPVQSGSNDVLKIMARKYTREHFLGLVDR 359 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ P++ +++D IVG+P ET++ F T+ L ++G+ AF++ YSPR GTP + M++ Sbjct: 360 IKAAIPEVTLTTDIIVGYPNETEEQFEETLSLYREVGFDAAFTYIYSPREGTPAAKMIDN 419 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V E VK ERL L + + E + GQ++EVL+E K + L G + + V Sbjct: 420 VPEEVKKERLQRLNEVVGEYSRKALERLNGQVVEVLVEGTSKRRDDVLAGYTRKNRLVNF 479 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG ++KV+IT+ +L GE V Sbjct: 480 KAPAEVIGQLVKVKITETTSYSLTGEFV 507 >gi|319401418|gb|EFV89628.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus epidermidis FRI909] Length = 517 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 264/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ M + + GY + +++AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D L+ V GC++Q E +IL+ V++V G + LPE+LE A Sbjct: 130 LKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V G+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDIIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK ++G DLL +S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYQEITLLGQNVNSY-GKDIEGLDYELGDLLEDISKID-IPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I+ ++P++HLPVQSG++++LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P ET++ F T+ L D + + A+++ YS R GTP + M + V Sbjct: 359 EAIPNVALTTDIIVGYPNETEEQFEETLTLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442 VK ERL L KK+ G+I+ VL E K++ L G + + V Sbjct: 419 LEVKKERLQRLNKKVGMYSQQAMSQYEGKIVTVLCEGSSKKDENVLAGYTDKNKLVNFKG 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 +IG ++ V+I + K +L G + Sbjct: 479 PRESIGKLVDVKIDEAKQYSLNGTFI 504 >gi|294791811|ref|ZP_06756959.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27] gi|294793672|ref|ZP_06758809.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44] gi|294455242|gb|EFG23614.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44] gi|294457041|gb|EFG25403.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27] Length = 437 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 166/450 (36%), Positives = 259/450 (57%), Gaps = 21/450 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++ +YGCQMN DS R+ S GY +++ ADLI+LNTC +RE A KVY + Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++ LK + +L++ V GC+AQ E+ +R+P +++V+G + E++E + Sbjct: 62 GELKRLK----RNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQ 117 Query: 145 FGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G VD D SV + E + +G + A++ I GC+KFCT+C+VP+ RG Sbjct: 118 HGHTHQISVDMDNSVLPELE--AKPNGSF------YAWVPIMNGCNKFCTYCIVPHVRGR 169 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGL 260 EISR + +V E L G EITLLGQNVN++ GLD + T F L+ +L I G+ Sbjct: 170 EISRPVEAIVKEVTDLGVKGFKEITLLGQNVNSY---GLDFKDGTDFGTLIDALDGIPGI 226 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RY TSHP+DMS +I A G ++ +LHLP+QSGS+RILK MNR +T Y++++ Sbjct: 227 ERIRYMTSHPQDMSKSMIDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLS 286 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R D+ +++D IVGFPGET++DF+AT+ L+ + Y A++F YS R GTP + M + Sbjct: 287 YCREKIKDVVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDD 346 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439 Q+ E +K RL L E N GQ+ ++++E +++ GR+ + V+ Sbjct: 347 QIPEEIKRVRLQTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVL 406 Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + +IG + I + YG +V Sbjct: 407 FPKDDSLSIGQTVPAHIDKAQTWVCYGSIV 436 >gi|124023692|ref|YP_001017999.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Prochlorococcus marinus str. MIT 9303] gi|229890600|sp|A2CB74|MIAB_PROM3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|123963978|gb|ABM78734.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT 9303] Length = 480 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 175/451 (38%), Positives = 268/451 (59%), Gaps = 23/451 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F+++++GCQMN DS RM + + GY + +ADL++ NTC IR+ A +KVYS+LGR Sbjct: 31 FWIQTFGCQMNKADSERMAGILEAMGYHEAPAELEADLVLYNTCTIRDNAEQKVYSYLGR 90 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + L +VVAGCVAQ EGE +LRR P +++V+GPQ RL LL + G Sbjct: 91 ----QARRKRTHPHLKLVVAGCVAQQEGEALLRRIPELDLVMGPQHANRLEALLTQVDNG 146 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++VV TD + E L+ R + A++ + GC++ CT+CVVP RG E SRS Sbjct: 147 QQVVATDDN--HILEDLTTA----RRDSTICAWVNVIYGCNERCTYCVVPSVRGKEQSRS 200 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260 + E L G EITLLGQN++A+ G+ L G + T +DLL+ + +++G+ Sbjct: 201 PEAIRLEIEGLAARGFREITLLGQNIDAY-GRDLPGITPEGRRQNTLTDLLHHIHDVEGI 259 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHPR ++ LI+A DL + + H+P QSG + +LK+M R +T YR+I++ Sbjct: 260 ERIRFATSHPRYFTERLIEACFDLPKVCEHFHIPFQSGDNDVLKAMARGYTVERYRRIVN 319 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR + PD AIS+D IV FPGETD F+ T++LV+++G+ Q + YSPR TP + Sbjct: 320 RIRELMPDAAISTDVIVAFPGETDAQFQNTLNLVEEVGFDQVNTAAYSPRPNTPAATWSN 379 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS-----PW 434 Q+ E VK ERL L + + N G++ +VL E + K+ +L+GR+ + Sbjct: 380 QLPEVVKVERLKQLNALVERVALQRNSRYSGKVEQVLAEGINPKKPQQLMGRTRTNRLTF 439 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 + S ++ GD++ V+I V+ +L G Sbjct: 440 FAAEGPQSCRYSPGDLVDVQINSVRAFSLSG 470 >gi|89891819|ref|ZP_01203321.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BBFL7] gi|89515974|gb|EAS18639.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BBFL7] Length = 490 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 177/464 (38%), Positives = 270/464 (58%), Gaps = 31/464 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + +G+ N +++ADL+++NTC IR+KA + V Sbjct: 24 RKLYIESYGCQMNFSDSEIVASILSKEGFNTTNVLEEADLVLVNTCSIRDKAEQTV---- 79 Query: 85 GRIRNLKNSRIKE--GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 R R K +R+KE ++ V V GC+A+ + L IV++VVGP Y LP L+ Sbjct: 80 -RKRLEKYNRVKERQNPNMKVGVLGCMAERLKSKFLEEEKIVDMVVGPDAYKDLPNLVAE 138 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ V+ S E+ + ++ V N GVTAF++I GCD CTFCVVP+TRG E Sbjct: 139 IDEGRDAVNVILSKEETYGDIAPVRLNTN---GVTAFVSITRGCDNMCTFCVVPFTRGRE 195 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSD 249 SR +++E L G E+TLLGQNV++ W G GL D K T F+ Sbjct: 196 RSRDPQSILEEIADLTSKGFKEVTLLGQNVDSYLWYGGGLKKDFAKATPMAQATAVDFAQ 255 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL ++ +R+R+ TS+P+D+SD ++ A + + Y+HLPVQSGSDRILK MNR Sbjct: 256 LLNQVATAFPNLRVRFATSNPQDISDDVLHAIANHRNICNYIHLPVQSGSDRILKEMNRL 315 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 HT EY ++IDR+ ++ P+ A+S D I GFP ET++D + T+ L++ + Y F F YS Sbjct: 316 HTREEYMRLIDRVHTIIPECAVSQDMITGFPTETEEDHQDTLSLMEYVKYDYGFMFAYSE 375 Query: 370 RLGTPGSNMLE-QVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 R GT + +E V E+VK+ RL + +Q++ ++ + +G+ +E LIEK K+ Sbjct: 376 RPGTMAARKMEDDVPEDVKSRRLNEIIAIQRRTGLERAQY---FIGKTVECLIEKESKKS 432 Query: 426 -GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + GR+ V +N+ +GD + V+ITD +TL GE V Sbjct: 433 DSQWAGRNSQNYVAVFPKENYKVGDFVNVKITDCTSATLIGEAV 476 >gi|134299740|ref|YP_001113236.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfotomaculum reducens MI-1] gi|229890514|sp|A4J5Q8|MIAB_DESRM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|134052440|gb|ABO50411.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum reducens MI-1] Length = 456 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 168/445 (37%), Positives = 263/445 (59%), Gaps = 14/445 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + ++S+GCQMN D+ + M GY ++ ++AD+I+LNTC +RE A KV+ LGR Sbjct: 19 YLIQSFGCQMNERDAESLAGMLEDLGYCPTSAQEEADIILLNTCCVRETAESKVFGLLGR 78 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +R LK ++ DL++ V GC++Q E + I R P V+++ G + LP ++ + + Sbjct: 79 LRKLKVAK----PDLILGVCGCMSQQEDAAKRIRRSFPFVDLIFGTHNIHELPRMIHQVQ 134 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V ++ E V RK + A++TI GC+ FCT+C+VPY RG E S Sbjct: 135 ENHEAVLEVWATEKGITESIPV----KRKDKLKAWVTIMYGCNNFCTYCIVPYVRGRERS 190 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++DE ++L+ G E+TLLGQNVN++ GK F+DLL ++ +I GL R+R Sbjct: 191 RQPEDIIDEIKELVQEGYKEVTLLGQNVNSY-GKDFKN-NYRFADLLMAIDDITGLERVR 248 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHPRD LI+ + + HLP Q+GS+R+LK MNR +T Y ++I +I+ Sbjct: 249 FMTSHPRDFDQRLIEVVASAKKVCEHYHLPAQAGSNRVLKMMNRGYTREHYLELIRKIKE 308 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+ +I++D +VGFPGET++DF+ T+DLV ++ Y AF+F Y+ R GTP + LEQV E Sbjct: 309 RVPNASITADLMVGFPGETEEDFQETLDLVKQVRYDSAFTFVYNIRSGTPAAK-LEQVSE 367 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSK 443 VK+ER+ L + + N G+++EVL+E K L+ GR+ + VV Sbjct: 368 EVKSERIQRLIELQNLISLENNQREEGRVLEVLVEGETKTNPDLLAGRTRTNKLVVFQGS 427 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 H G ++++RIT + + L GE+V Sbjct: 428 GHLPGQLVQIRITKGRPNLLEGEVV 452 >gi|218290137|ref|ZP_03494299.1| RNA modification enzyme, MiaB family [Alicyclobacillus acidocaldarius LAA1] gi|218239846|gb|EED07035.1| RNA modification enzyme, MiaB family [Alicyclobacillus acidocaldarius LAA1] Length = 497 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 168/448 (37%), Positives = 264/448 (58%), Gaps = 14/448 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P RF +++YGCQMN +D+ M + + GYE + ++AD I+ NTC +RE A +KV+ Sbjct: 54 PYRFLIRTYGCQMNEHDTEVMAGLLTAMGYEPTHDAEEADFILFNTCAVRENAEDKVFGE 113 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS--PIVNVVVGPQTYYRLPELLE 141 +GR+R LK ++ +L+ + GC+AQ +G + + R P +++V G +RLP LL Sbjct: 114 IGRLRPLK----RQNPELIFGLCGCMAQEKGVQRMVREKYPWIDLVFGTHNIHRLPALLS 169 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 AR + V V D ++ D RK V A++ +Q GC+KFCT+C+VPYTRG+ Sbjct: 170 AARASQETV---MEVWDNAPE-TVEDWPKLRKDRVRAWVNVQYGCNKFCTYCIVPYTRGV 225 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR V+ E +L+ G +ITLLGQNVN + G+D F+ LL ++ I G+ Sbjct: 226 ERSRLPEDVLREVVELVQEGYQDITLLGQNVNDY---GVDLGTTNFARLLRQVNSIPGIG 282 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R+TTS+P + +D LI A + + ++ ++HLPVQSG++ IL+ MNR HT Y +++D+ Sbjct: 283 WIRFTTSNPWNFTDELIDAIAESENVVEHIHLPVQSGNNEILRRMNRSHTREYYLRLVDK 342 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ P ++I++D IVGFPGET+ F+ T+ LV ++ + AF+F YSPR TP + + Sbjct: 343 IRTRIPGVSITTDLIVGFPGETEAHFQDTLRLVREVEFDNAFTFIYSPRENTPAARWNDD 402 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 K ERL+ L + E N+ G ++EVL++ K L GR+ + V+ Sbjct: 403 TPLEEKKERLMRLNEVQNEISRRHNEKLRGALVEVLVDGESKTNPDVLSGRTRTNKLVLF 462 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG I+VR+T+ + L GE+ Sbjct: 463 RGDKSLIGQRIRVRVTEPQTFLLKGEIA 490 >gi|314933472|ref|ZP_07840837.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus caprae C87] gi|313653622|gb|EFS17379.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus caprae C87] Length = 514 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 264/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ M + + GY ++ AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D L+ V GC++Q E +IL+ V+++ G + LPE+LE A Sbjct: 130 LKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGSIKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++E R+L G EITLLGQNVN++ GK ++ DLL +S+I + R+ Sbjct: 241 SRRPEDIINEVRELAREGYQEITLLGQNVNSY-GKDIEDLDYGLGDLLEDISKI-DIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I+ + ++P++HLPVQSG++ +LK M R++T Y +++RI+ Sbjct: 299 RFTTSHPWDFTDRMIEVIANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P+IA+++D IVG+P ET++ F T+ L D++ + A+++ YS R GTP + M + V Sbjct: 359 TAIPNIALTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 VK ERL L KK+ E G+I+ VL E K+ L G + + V + Sbjct: 419 TEVKKERLQRLNKKVGEYSQKAMSQYEGEIVTVLCEGASKKDDTVLAGYTEKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ V+I + K +L G V Sbjct: 479 PKEMIGKLVDVKIDEAKQYSLNGTFV 504 >gi|242242576|ref|ZP_04797021.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis W23144] gi|242234003|gb|EES36315.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis W23144] Length = 514 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 264/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ M + + GY + +++AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D L+ V GC++Q E +IL+ V++V G + LPE+LE A Sbjct: 130 LKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V G+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDIIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK ++G DLL +S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYQEITLLGQNVNSY-GKDIEGLDYELGDLLEDISKID-IPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I+ ++P++HLPVQSG++++LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P ET++ F T+ L D + + A+++ YS R GTP + M + V Sbjct: 359 EAIPNVALTTDIIVGYPNETEEQFEETLTLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442 VK ERL L KK+ G+I+ VL E K++ L G + + V Sbjct: 419 LEVKKERLQRLNKKVGMYSQQAMSQYEGKIVTVLCEGSSKKDESVLAGYTDKNKLVNFKG 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 +IG ++ V+I + K +L G + Sbjct: 479 PRESIGKLVDVKIDEAKQYSLNGTFI 504 >gi|332519830|ref|ZP_08396294.1| RNA modification enzyme, MiaB family [Lacinutrix algicola 5H-3-7-4] gi|332044389|gb|EGI80583.1| RNA modification enzyme, MiaB family [Lacinutrix algicola 5H-3-7-4] Length = 479 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 182/463 (39%), Positives = 265/463 (57%), Gaps = 30/463 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGC MN DS + + QGY + ++DADL+++NTC IR+KA + V L Sbjct: 24 KKLFIESYGCAMNFSDSEIVASILDEQGYNTTSKLEDADLVLVNTCSIRDKAEQTVRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K + K + V V GC+A+ + L IV++VVGP Y LP LL Sbjct: 84 EKYNAVKRTNPK----MKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLLAEVE 139 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G ++ S ++ + +S V N GVTAF++I GCD CTFCVVP+TRG E S Sbjct: 140 EGHDAINVVLSKDETYGDVSPVRLNSN---GVTAFVSITRGCDNMCTFCVVPFTRGRERS 196 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEKCT---FSDLL 251 R +++E L G EITLLGQNV++ W G GL D +K T FS LL Sbjct: 197 RDPQSIIEEINDLWSKGYKEITLLGQNVDSYLWYGGGLKKDFSKASDIQKATAVDFSKLL 256 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +E + +R+R++TS+P+DMS +IK + ++HLPVQSGSDRILK+MNR HT Sbjct: 257 QICAEAQPKMRIRFSTSNPQDMSLEVIKTMAKYKNICNHIHLPVQSGSDRILKAMNRLHT 316 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY +ID I+++ PD AIS D I GFP ET++D + T+ L++ + Y + F YS R Sbjct: 317 RKEYFTLIDNIKTIIPDCAISQDMIAGFPTETEEDHQDTLSLMEYVKYNFGYMFTYSERP 376 Query: 372 GTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFND----ACVGQIIEVLIEKHGKE-K 425 GT L + + E VK+ RL K++ E Q+ ++ +G+ +EVLIE+ K+ K Sbjct: 377 GTLAERKLDDDIPEAVKSRRL----KEIIELQLKHSELRTREHLGKTVEVLIERESKKSK 432 Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + GR+ V N+ IGD + V++TD +TL GE V Sbjct: 433 EQWSGRTEKNLVAVFPKGNYKIGDFVNVKVTDCTKATLIGEAV 475 >gi|120403419|ref|YP_953248.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium vanbaalenii PYR-1] gi|229890571|sp|A1T7U2|MIAB_MYCVP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|119956237|gb|ABM13242.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium vanbaalenii PYR-1] Length = 510 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 169/432 (39%), Positives = 253/432 (58%), Gaps = 24/432 (5%) Query: 13 MVSQIVDQCIVP------QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66 M S + Q P + F V++YGCQMNV+DS R+ + GY R DAD++V Sbjct: 1 MTSTVTQQASGPSPDRSARTFEVRTYGCQMNVHDSERLAGLLEGAGYRRAGEGADADIVV 60 Query: 67 LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126 NTC +RE A K+Y L + K S D+ + V GC+AQ + + +LR++P V+V Sbjct: 61 FNTCAVRENADNKLYGNLSHLAPRKQSDP----DMQIAVGGCLAQKDRDSVLRKAPWVDV 116 Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186 V G LP LL+RAR RV + + E E S + +R+ A+++I GC Sbjct: 117 VFGTHNIGSLPALLDRARH-NRVAQVEIA-EALQEFPSALPA--SRESSYAAWVSISVGC 172 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG---- 242 + CTFC+VP RG E+ R V+ E + L+D GV EITLLGQNVNA+ D Sbjct: 173 NNTCTFCIVPALRGREVDRRPGDVLAEVQSLVDQGVLEITLLGQNVNAYGVSFADPTEPR 232 Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 ++ F+ LL + I GL R+R+T+ HP + +D +I+A + + P LH+P+QSGSDRI Sbjct: 233 DRGAFAKLLRACGRIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPTLHMPLQSGSDRI 292 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L++M R + A Y IIDR+R+ P AI++D IVGFPGET++DF+AT+D+V ++ A Sbjct: 293 LRAMRRSYRAERYLGIIDRVRAAIPHAAITTDLIVGFPGETEEDFQATLDVVAASRFSSA 352 Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 F+F+YS R GTP + + +QV + V +E RL+ LQ+++ ++ N A +G+ +E+L+ Sbjct: 353 FTFQYSKRPGTPAAELADQVPKAVVSERYQRLIELQERISLEE---NTAQIGRRVELLVA 409 Query: 420 KHGKEKGKLVGR 431 K R Sbjct: 410 TGEGRKDAATAR 421 >gi|71902415|ref|ZP_00684371.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification enzyme MiaB [Xylella fastidiosa Ann-1] gi|71727853|gb|EAO30094.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification enzyme MiaB [Xylella fastidiosa Ann-1] Length = 375 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 157/375 (41%), Positives = 231/375 (61%), Gaps = 17/375 (4%) Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERL 163 V GCVA EG+ I++R+P V++V GPQT +RLP+++ R R +D + +KF+ L Sbjct: 3 VGGCVASQEGQTIVKRAPYVDLVFGPQTLHRLPDMIRARREQNRPQIDISFPEIEKFDHL 62 Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223 R G +AF++I EGC K+C+FCVVPYTRG E+SR V+ E L GV Sbjct: 63 PTP-----RAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEVSRPFEDVLTEIAHLATQGVR 117 Query: 224 EITLLGQNVNAWRG-------KGLDGEKCTFSDL---LYSLSEIKGLVRLRYTTSHPRDM 273 EI LLGQNVNA+RG + ++DL + ++++ + + R+R+TTSHP + Sbjct: 118 EINLLGQNVNAYRGAMDPGPSNNTNPAAPPYADLGLLIRAIAQFESIGRIRFTTSHPLEF 177 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 SD L++A+ D+ L +LHLPVQSGSDRIL +M R +TA E++ I ++R+VRPDI+ISS Sbjct: 178 SDSLVEAYRDIPQLANHLHLPVQSGSDRILSAMKRGYTALEFKSKIRKLRAVRPDISISS 237 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 DFI+GFPGE+D DF+ TM L++ IG+ Q+FSF YS R GTP SN+ + + +K RL Sbjct: 238 DFIIGFPGESDTDFQKTMQLIEDIGFDQSFSFIYSRRPGTPASNLEDHTPDEIKRTRLEH 297 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQK + + +G + VL+E K+ +L G++ ++ V IG I Sbjct: 298 LQKHINAYAADISKRMIGTVQTVLVEGPSKKNPNELTGKTENMRPVNFPGNPRLIGQFID 357 Query: 453 VRITDVKISTLYGEL 467 V IT+ ++L G + Sbjct: 358 VHITEALTNSLRGRV 372 >gi|159903894|ref|YP_001551238.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT 9211] gi|229890601|sp|A9BBS2|MIAB_PROM4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|159889070|gb|ABX09284.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT 9211] Length = 467 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 174/457 (38%), Positives = 270/457 (59%), Gaps = 35/457 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM + GY++ ADL++ NTC IR+ A +KVYS+LGR Sbjct: 24 YWITTFGCQMNKADSERMAGILERMGYKQAEEELQADLVLYNTCTIRDNAEQKVYSYLGR 83 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R K L ++VAGCVAQ EGE +LRR P +++V+GPQ RL LL + G Sbjct: 84 ----QALRKKLFPQLKLIVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLNKVETG 139 Query: 147 KRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++V+ T+ Y +ED L+ R + A++ + GC++ CT+CVVP RG E S Sbjct: 140 QQVLATEELYIIED----LTTA----RRDSSICAWVNVIYGCNERCTYCVVPSVRGKEQS 191 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIK 258 R+ + E L + G E+TLLGQN++A+ G+ L G +K T +DLLY + +I+ Sbjct: 192 RTPPAIKREIENLANTGFKEVTLLGQNIDAY-GRDLPGTTPQGRKKNTLTDLLYYIHDIE 250 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R+R+ TSHPR + LI+A +L + + H+P QSG D IL M R + Y++I Sbjct: 251 GIERIRFATSHPRYFTSRLIEACAELPKVCEHFHIPFQSGDDEILNQMRRGYKIKTYKKI 310 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I RIR + P+ +I++D IV FPGET++ F+ ++ LV++IG+ Q + YSPR TP + Sbjct: 311 IGRIRELMPNASITADVIVAFPGETNEQFQRSLSLVEEIGFDQLNTAAYSPRPNTPAALW 370 Query: 379 LEQVDENVKAERLLCLQK----KLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS- 432 Q+ E +K ERL L K +E+ V + D ++ EVL E + K+K +L+GR+ Sbjct: 371 PNQIPEEIKIERLRKLNSLVEIKAKERNVRYKD----RVEEVLAENTNPKDKQQLMGRTR 426 Query: 433 ----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 + V ++ GD++KVR+ D++ +L G Sbjct: 427 TNRLTFFPKVDNQGNSYKPGDLVKVRVKDIRAFSLSG 463 >gi|223044509|ref|ZP_03614536.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis SK14] gi|222442106|gb|EEE48224.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis SK14] Length = 514 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 264/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ M + + GY ++ AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D L+ V GC++Q E +IL+ V+++ G + LPE+LE A Sbjct: 130 LKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGSIKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++E R+L G EITLLGQNVN++ GK ++ DLL +S+I + R+ Sbjct: 241 SRRPEDIINEVRELAREGYQEITLLGQNVNSY-GKDIEDLDYGLGDLLEDISKI-DIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I+ + ++P++HLPVQSG++ +LK M R++T Y +++RI+ Sbjct: 299 RFTTSHPWDFTDRMIEVIANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P+IA+++D IVG+P ET++ F T+ L D++ + A+++ YS R GTP + M + V Sbjct: 359 TAIPNIALTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 VK ERL L KK+ E G+I+ VL E K+ L G + + V + Sbjct: 419 TEVKKERLQRLNKKVGEYSQKAMSKYEGKIVTVLCEGASKKDDTVLAGYTDKNKLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ V+I + K +L G V Sbjct: 479 PKEMIGKLVDVKIDEAKQYSLNGTFV 504 >gi|86131573|ref|ZP_01050171.1| tRNA-i(6)A37 modification enzyme MiaB [Dokdonia donghaensis MED134] gi|85818018|gb|EAQ39186.1| tRNA-i(6)A37 modification enzyme MiaB [Dokdonia donghaensis MED134] Length = 484 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 178/463 (38%), Positives = 270/463 (58%), Gaps = 29/463 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGCQMN DS + + ++GY ++++ADL+++NTC IREKA V L Sbjct: 24 KKLFIESYGCQMNFADSEVVASILANEGYNTTQNLEEADLVLVNTCSIREKAEVTVRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + + +K K+ + V V GC+A+ + L IV++VVGP Y +P LL Sbjct: 84 EKYQAVKR---KQNPTMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDIPNLLSEVE 140 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V+ S E+ + +S V N GVTAF++I GCD CTFCVVP+TRG E S Sbjct: 141 EGRDAVNVILSKEETYGDISPVRLQTN---GVTAFVSITRGCDNMCTFCVVPFTRGRERS 197 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251 R +++E + L + G EITLLGQNV++ W G GL D +K + F+ L+ Sbjct: 198 RDPQSILEEVQDLANRGFKEITLLGQNVDSYLWYGGGLKKDFDKASEMAKATAVNFAQLM 257 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +++ + +R+R++TS+P+DM+ +I+ + Y+HLPVQSGSDRILK MNR+HT Sbjct: 258 DMVAKAQPKMRIRFSTSNPQDMTLDVIEVMASHKNICNYIHLPVQSGSDRILKLMNRQHT 317 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY+ +ID I+++ PDI IS D I GFP ET++D + T+DL+D + Y F F YS R Sbjct: 318 VAEYKTLIDNIKNLIPDIGISQDMITGFPTETEEDHQGTLDLIDYVKYDYGFMFYYSERP 377 Query: 372 GTPGSNMLE-QVDENVKAERL---LCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKE-K 425 GT +E + +K RL + LQ+++ R+ + + D Q IEVLIEK K+ K Sbjct: 378 GTLAERKMEDDIPLEIKKRRLQDVIDLQREISRKNLLRYQD----QTIEVLIEKESKKNK 433 Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + GR+ V ++ +GD + V++ + TL GE V Sbjct: 434 DEWSGRNDQNVVAVFPKGDYKVGDFVNVKVNECTTGTLIGEAV 476 >gi|118465431|ref|YP_882802.1| hypothetical protein MAV_3625 [Mycobacterium avium 104] gi|118166718|gb|ABK67615.1| conserved hypothetical protein [Mycobacterium avium 104] Length = 688 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 165/414 (39%), Positives = 244/414 (58%), Gaps = 21/414 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + V++YGCQMNV+DS R+ + + GY R + AD++V NTC +RE A K+Y L Sbjct: 4 YQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFNTCAVRENADNKLYGNLS 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + K S + + + V GC+AQ + E +LRR+P V+VV G LP LLERAR Sbjct: 64 HLAPRKRSNPQ----MQIAVGGCLAQKDREAVLRRAPWVDVVFGTHNIGSLPTLLERARH 119 Query: 146 GKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K V+ +++ L R+ A+++I GC+ CTFC+VP RG E+ Sbjct: 120 NKAAQVEIAEALQQFPSSLPSA-----RESAYAAWVSISVGCNNSCTFCIVPSLRGKEVD 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGL 260 RS ++ E R L+ +GV E+TLLGQNVNA+ L ++ F+ LL + EI GL Sbjct: 175 RSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRGAFARLLRACGEIDGL 234 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP + +D +I+A + P LH+P+QSGSDR+L++M R + A Y IID Sbjct: 235 ERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERYLGIID 294 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R+ P AI++D IVGFPGET++DF AT+D+V + +A AF+F+YS R GTP + + Sbjct: 295 RVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAAELDG 354 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 Q+ + V + ERL+ LQ+ + Q N A VGQ +E+L+ K R Sbjct: 355 QIPKAVVQERYERLVELQESISLQG---NQALVGQTVELLVATGEGRKDSATAR 405 >gi|313114011|ref|ZP_07799566.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium cf. prausnitzii KLE1255] gi|310623713|gb|EFQ07113.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium cf. prausnitzii KLE1255] Length = 459 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 185/463 (39%), Positives = 260/463 (56%), Gaps = 19/463 (4%) Query: 10 VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69 A +V Q D P FV SYGCQ NV D R++ + GY + +DADLI+ NT Sbjct: 12 AAELVKQAYD---TPPLAFVHSYGCQQNVNDGERIKGVLMDIGYGLCDKPEDADLILFNT 68 Query: 70 CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA-QAEGEEILRRS-PIVNVV 127 C +RE A ++V+ +G ++ LK + DL++ + GC+A Q E LR+S P V++V Sbjct: 69 CAVREHAEQRVFGNVGALKGLKEKK----HDLIIGLCGCMANQKHVVEKLRQSYPYVDLV 124 Query: 128 VGPQTYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEG 185 G LP+L+ ++ + KRV+ + +R IV+ R+ A+L I G Sbjct: 125 FGVDGIDTLPQLIAQKLQKHKRVL------MEPAQRPVIVENIPIRRESEFRAWLPIMYG 178 Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245 CD FCT+C+VPY RG E SR ++ E R L++ G EITLLGQNVN++ GKGL+ EK Sbjct: 179 CDNFCTYCIVPYVRGREKSRKPGDILAEFRGLVEAGYKEITLLGQNVNSY-GKGLE-EKV 236 Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 FSDLL L + G +R+ TSHP+D S LI L +LHLPVQ GSD +LK Sbjct: 237 DFSDLLNLLCTVPGDYHIRFMTSHPKDASHKLIDTIAAQPKLCKHLHLPVQCGSDELLKK 296 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 MNR +T +Y ++I+ R P I SSD IVGFPGET+ DF T++LV K+GY Q F+F Sbjct: 297 MNRHYTVEQYMELIEYARKTVPGITFSSDIIVGFPGETEADFVKTLELVQKVGYMQLFTF 356 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 YS R GT + M + K +R+ L K E ++ A VGQ ++VL+E G+ + Sbjct: 357 IYSKRTGTKAAEMPDPTPRKEKTDRMTRLLKVQDEIAMALVKAQVGQTVKVLVEGFGRNE 416 Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 G L GR +V + +G V +T + + L GEL Sbjct: 417 GTLSGRLDNNLTVEFTADASLMGSYANVHLTGARATVLLGELA 459 >gi|300933041|ref|ZP_07148297.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Corynebacterium resistens DSM 45100] Length = 507 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 161/455 (35%), Positives = 270/455 (59%), Gaps = 23/455 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + GY V D++V NTC +RE A ++Y LG+ Sbjct: 8 YEVRTFGCQMNVHDSERLSGLLEDNGYIPVGEGQTPDVVVFNTCAVRENADNRLYGTLGQ 67 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 ++ +K+S + + V GC+AQ + + +++++P V+VV G LP LL R+ Sbjct: 68 MKAVKDSHP----GMQIAVGGCMAQKDKQTVVKKAPWVDVVFGTHNLGSLPTLLARSAHN 123 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +R + + D E V R+ ++++ GC+ CTFC+VP RG E R Sbjct: 124 ERA---EVEIVDSLEEFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRR 179 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +++ E + L+D GV E+TLLGQNVNA+ L+ ++ F+ LL + EI+GL R Sbjct: 180 PGEILAEVKALVDQGVSEVTLLGQNVNAYGVNFSDPELERDRGAFAKLLRACGEIEGLER 239 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+T+ HP + +D +I+A + V+ P LH+P+QSGSD++LK M R + + ++ I++++ Sbjct: 240 LRFTSPHPAEFTDDVIEAMAETPVVCPQLHMPLQSGSDKVLKDMRRSYRSKKFLAILEKV 299 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P AI++D IVGFPGET++DF+ATMD+V+K +A A++F+YSPR GTP + M Q+ Sbjct: 300 RERIPHAAITTDIIVGFPGETEEDFQATMDVVEKSRFASAYTFQYSPRPGTPAAEMDNQI 359 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQ 436 + V + ERLL LQ+++ ++ N+ +G E+L++ G+ E ++ GR+ + Sbjct: 360 PKAVVQDRYERLLELQERISREE---NEKLIGTRQELLVQADGRKNDETKRMSGRARDGR 416 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 + + I GDI++V +T L+ + V Sbjct: 417 LIHFDPTVEGIRAGDIVEVEVTGAAGHFLFADAGV 451 >gi|269797930|ref|YP_003311830.1| RNA modification enzyme, MiaB family [Veillonella parvula DSM 2008] gi|269094559|gb|ACZ24550.1| RNA modification enzyme, MiaB family [Veillonella parvula DSM 2008] Length = 437 Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 165/450 (36%), Positives = 259/450 (57%), Gaps = 21/450 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++ +YGCQMN DS R+ S GY +++ ADLI+LNTC +RE A KVY + Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++ LK + +L++ V GC+AQ E+ +R+P +++V+G + E++E + Sbjct: 62 GELKRLK----RNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQ 117 Query: 145 FGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G VD D +V + E + +G + A++ I GC+KFCT+C+VP+ RG Sbjct: 118 HGHTHQISVDMDNTVLPELE--AKPNGSF------YAWVPIMNGCNKFCTYCIVPHVRGR 169 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGL 260 EISR + +V E L G EITLLGQNVN++ GLD + T F L+ +L I G+ Sbjct: 170 EISRPVEAIVKEVTDLGVKGFKEITLLGQNVNSY---GLDFKDGTDFGTLVDALDGIPGI 226 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RY TSHP+DMS +I A G ++ +LHLP+QSGS+RILK MNR +T Y++++ Sbjct: 227 ERIRYMTSHPQDMSKSMIDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLS 286 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R D+ +++D IVGFPGET+DDF+AT+ L+ + Y A++F YS R GTP + M + Sbjct: 287 YCREKIKDVVVTTDIIVGFPGETEDDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDD 346 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439 Q+ E +K RL L E N GQ+ ++++E +++ GR+ + V+ Sbjct: 347 QIPEEIKRVRLQTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVL 406 Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + +IG + I + YG ++ Sbjct: 407 FPKDDSLSIGQTVPAHIDKAQTWVCYGSIL 436 >gi|295099816|emb|CBK88905.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium cylindroides T2-87] Length = 477 Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 175/464 (37%), Positives = 273/464 (58%), Gaps = 25/464 (5%) Query: 18 VDQCIVPQ---------RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68 +D I+P+ ++++ +YGCQ N DS + + S G+E+ S +D D+I++N Sbjct: 26 IDSFIIPENAKFIGNGKKYYISTYGCQANERDSETLAGILDSLGFEKSESPEDVDVILIN 85 Query: 69 TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNV 126 TC IR+ A EKV LG I N K + DL++ V GC+AQ EG +L + P V + Sbjct: 86 TCAIRQNAEEKV---LGEIGNFK-RLYRANKDLVIGVCGCMAQEEGLVNTLLEKYPQVRL 141 Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEG 185 + G ++LPE+L F K+ V YS E + +E L + G ++ A++ I G Sbjct: 142 LFGTHNIHQLPEMLYSVMFEKKRVVKIYSKEGEVYENLPVHRFGKHK-----AWVNIMYG 196 Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245 CDKFCT+C+VPYTRG + SR++ Q++ E ++L D G EITLLGQNVNA+ GK +D Sbjct: 197 CDKFCTYCIVPYTRGKQRSRTMDQILFEVKELYDQGYKEITLLGQNVNAY-GKDID-PNM 254 Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 F+ LL +++I G+ R+R+TTSHP D SD +I D +MP++HLP+QSG D ILK Sbjct: 255 NFACLLEEVAKI-GIPRIRFTTSHPWDFSDDMIDVIAKYDNIMPFVHLPLQSGDDEILKR 313 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M RR+T+ Y ++ ++I + +A+S+D IVGFP E+D+ F T+++++K + AF+F Sbjct: 314 MGRRYTSESYMELFNKIVTKIDRVAVSTDVIVGFPNESDEQFEHTLEIMEKCKFDNAFTF 373 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 +SPR GTP + M + +D K ERL L + + N A G++++VL++ K+ Sbjct: 374 IFSPRPGTPAARMEDPIDFETKKERLARLNTLWNKYALEKNKAYEGKVVKVLVDGFSKKD 433 Query: 426 GKLV-GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + G + + V +N GD + V I K +L G +V Sbjct: 434 DHVYSGYTDTNKLVNFTGENIQPGDFVDVLIETGKTFSLDGRVV 477 >gi|27467889|ref|NP_764526.1| hypothetical protein SE0971 [Staphylococcus epidermidis ATCC 12228] gi|57866805|ref|YP_188442.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis RP62A] gi|251810724|ref|ZP_04825197.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis BCM-HMP0060] gi|282876275|ref|ZP_06285142.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus epidermidis SK135] gi|293366743|ref|ZP_06613419.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus epidermidis M23864:W2(grey)] gi|81674874|sp|Q5HPP8|MIAB_STAEQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|81843816|sp|Q8CSS3|MIAB_STAES RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|27315434|gb|AAO04568.1|AE016747_65 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637463|gb|AAW54251.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis RP62A] gi|251805884|gb|EES58541.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis BCM-HMP0060] gi|281295300|gb|EFA87827.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus epidermidis SK135] gi|291319044|gb|EFE59414.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus epidermidis M23864:W2(grey)] gi|329728030|gb|EGG64474.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus epidermidis VCU144] gi|329736630|gb|EGG72896.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus epidermidis VCU045] Length = 514 Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 264/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ M + + GY + +++AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D L+ V GC++Q E +IL+ V++V G + LPE+LE A Sbjct: 130 LKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V G+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDIIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLLGQNVN++ GK ++G DLL +S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYQEITLLGQNVNSY-GKDIEGLDYELGDLLEDISKID-IPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I+ ++P++HLPVQSG++++LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P ET++ F T+ L D + + A+++ YS R GTP + M + V Sbjct: 359 EAIPNVALTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442 VK ERL L KK+ G+I+ VL E K++ L G + + V Sbjct: 419 LEVKKERLQRLNKKVGIYSQQAMSQYEGKIVTVLCEGSSKKDENVLAGYTDKNKLVNFKG 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 +IG ++ V+I + K +L G + Sbjct: 479 PRESIGKLVDVKIDEAKQYSLNGTFI 504 >gi|229890676|sp|A0QIR4|MIAB_MYCA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 715 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 165/414 (39%), Positives = 244/414 (58%), Gaps = 21/414 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + V++YGCQMNV+DS R+ + + GY R + AD++V NTC +RE A K+Y L Sbjct: 31 YQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFNTCAVRENADNKLYGNLS 90 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + K S + + + V GC+AQ + E +LRR+P V+VV G LP LLERAR Sbjct: 91 HLAPRKRSNPQ----MQIAVGGCLAQKDREAVLRRAPWVDVVFGTHNIGSLPTLLERARH 146 Query: 146 GKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K V+ +++ L R+ A+++I GC+ CTFC+VP RG E+ Sbjct: 147 NKAAQVEIAEALQQFPSSLPSA-----RESAYAAWVSISVGCNNSCTFCIVPSLRGKEVD 201 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGL 260 RS ++ E R L+ +GV E+TLLGQNVNA+ L ++ F+ LL + EI GL Sbjct: 202 RSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRGAFARLLRACGEIDGL 261 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP + +D +I+A + P LH+P+QSGSDR+L++M R + A Y IID Sbjct: 262 ERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERYLGIID 321 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R+ P AI++D IVGFPGET++DF AT+D+V + +A AF+F+YS R GTP + + Sbjct: 322 RVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAAELDG 381 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 Q+ + V + ERL+ LQ+ + Q N A VGQ +E+L+ K R Sbjct: 382 QIPKAVVQERYERLVELQESISLQG---NQALVGQTVELLVATGEGRKDSATAR 432 >gi|89894341|ref|YP_517828.1| hypothetical protein DSY1595 [Desulfitobacterium hafniense Y51] gi|123091791|sp|Q24X58|MIAB_DESHY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|89333789|dbj|BAE83384.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 447 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 162/447 (36%), Positives = 260/447 (58%), Gaps = 14/447 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP++ +YGCQM+ D+ + ++ +GY R ++ ADLI++NTC +RE A K+ Sbjct: 6 VPKKVVTLAYGCQMSERDADTLTEISSQKGYVRSQELEQADLIIVNTCCVRESAENKILG 65 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140 +G +++LK + L + ++GC+ Q G E + +R+P V++ G + LL Sbjct: 66 KIGELKHLKEA----NPQLKIAISGCMVQQPGALERLRKRAPHVDIWAGTHNIHEFQRLL 121 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 E A +V + + E + + G + A++ I GC+ FCT+C+VP+ RG Sbjct: 122 EEAEEKGKVAEVWEKPRETQESVLLAAKG-----KLKAYVNISYGCNNFCTYCIVPHVRG 176 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR +++ E R L++ G E+TLLGQNVN++ G+ LD F+DLL + I GL Sbjct: 177 RERSRQPEEILAEIRALVETGCREVTLLGQNVNSY-GQDLD-RAYDFADLLKDVDSIDGL 234 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHP+D+SD LI+ L ++HLP Q+GSD ILK MNR++T Y I Sbjct: 235 WRVRFMTSHPKDLSDKLIETIAAGTHLCEHIHLPFQAGSDEILKGMNRKYTREYYLSRIA 294 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +I+ + P +++++D IVGFPGET++DF T++L+ ++ Y+QAF+F YS R GTP + M E Sbjct: 295 QIKVIIPQVSLTTDIIVGFPGETEEDFEQTLELIRQVRYSQAFTFMYSKRSGTPAAQMAE 354 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439 Q+ ++K RL L Q +++ +G+ EVL+E K +L GR+ + VV Sbjct: 355 QIPLDIKKRRLQQLITVQNAQSLAWRQEMIGKTCEVLVEGPSKSNPDRLTGRTRGYELVV 414 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGE 466 + IG +++V I D TL+GE Sbjct: 415 FPGEAQLIGTLVQVLIQDANSWTLFGE 441 >gi|153807123|ref|ZP_01959791.1| hypothetical protein BACCAC_01400 [Bacteroides caccae ATCC 43185] gi|149130243|gb|EDM21453.1| hypothetical protein BACCAC_01400 [Bacteroides caccae ATCC 43185] Length = 455 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 166/451 (36%), Positives = 267/451 (59%), Gaps = 20/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD + +NTC IR+ A +K+ + L Sbjct: 18 KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK + + L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 78 EFFHSLKKKKKR----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 132 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 133 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + GE TF LL +++E VR Sbjct: 188 RSRDVESILNEVSDLVAKGYKEVTLLGQNVNSYRFEKPTGEIVTFPMLLRTVAEAAPGVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++T Y + I Sbjct: 248 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 + + PD +++D GF ET++D ++ L+++ GY AF FKYS R GT S LE Sbjct: 308 KRIIPDCGLTTDIFSGFHSETEEDHALSLSLMEECGYDAAFMFKYSERPGTYASKHLEDN 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E+VK RL + LQ +L + N C+G+ EVL+E K + +L GR+ + Sbjct: 368 VPEDVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + H +GD + VR+T+ +TL GE V Sbjct: 425 VVFDRGTHRVGDFVNVRVTEASSATLKGEEV 455 >gi|284032611|ref|YP_003382542.1| RNA modification enzyme, MiaB family [Kribbella flavida DSM 17836] gi|283811904|gb|ADB33743.1| RNA modification enzyme, MiaB family [Kribbella flavida DSM 17836] Length = 497 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 173/416 (41%), Positives = 252/416 (60%), Gaps = 26/416 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS R+ + GY R D AD++V NTC +RE A K+Y LG Sbjct: 8 YEVRTYGCQMNVHDSERLRGLLEDAGYVRAPEGDQADVVVFNTCAVRENADNKLYGNLGH 67 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + +K K+ G L + V GC+AQ + I +++P V+VV G LP LLERAR Sbjct: 68 LAPVK---AKKPG-LQIAVGGCLAQKDKATITQKAPWVDVVFGTHNIGALPVLLERAR-- 121 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++ + VE E L + +R +A++++ GC+ CTFC+VP RG E Sbjct: 122 ---IEQESQVE-ILESLDVFPSTLPARRESAYSAWVSVSVGCNNTCTFCIVPALRGREKD 177 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263 R V+ E + L+ GV E+TLLGQNVN++ G++ G++ FS LL + EI GL R+ Sbjct: 178 RRPGDVLAEVQALVAEGVLEVTLLGQNVNSY---GVEFGDRYAFSKLLRACGEIDGLERV 234 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HPRD + +I+A + +MP LH+P+QSGSDRILK+M R + Y +II +R Sbjct: 235 RFTSPHPRDFTADVIEAMAETPNVMPSLHMPLQSGSDRILKTMRRSYRRDRYLKIISDVR 294 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PD AI++D IVGFPGET+ DF+ T+D+V + +A AF+F+YS R GTP +M +QV Sbjct: 295 AAMPDAAITTDIIVGFPGETEQDFQGTLDVVRQARFAGAFTFQYSKRPGTPAESMEDQVP 354 Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRS 432 V + ERL+ LQ E S N A VG+ +EVL+ E G++ +L GR+ Sbjct: 355 REVVQERYERLVALQD---EMAWSENKAIVGRSLEVLVAEGEGRKDAATHRLSGRA 407 >gi|259507456|ref|ZP_05750356.1| tRNA-I(6)A37 thiotransferase [Corynebacterium efficiens YS-314] gi|259164944|gb|EEW49498.1| tRNA-I(6)A37 thiotransferase [Corynebacterium efficiens YS-314] Length = 533 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 159/449 (35%), Positives = 257/449 (57%), Gaps = 27/449 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + GY D DLIV NTC +RE A +++Y LG Sbjct: 38 YEVRTFGCQMNVHDSERLSGLLEEAGYTAAGEGDTPDLIVFNTCAVRENADQRLYGTLGN 97 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R +K + + + V GC+AQ + + +++++P V+VV G LP LL RA Sbjct: 98 LRAVKENHPG----MQIAVGGCLAQKDKDTVVKKAPWVDVVFGTHNIASLPTLLNRAEHN 153 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++ + + D E+ V R+ ++++ GC+ CTFC+VP RG E R Sbjct: 154 QKA---EVEIVDSLEQFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRR 209 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLVR 262 ++ E + L+D GV E+TLLGQNVNA+ +D E + FS LL + +I+GL R Sbjct: 210 PGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFVDPELERDRSAFSKLLRACGDIEGLER 269 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP + + +I A + + P LH+P+QSGSDR+LK M R + + ++ I+D + Sbjct: 270 VRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDRVLKEMRRSYRSAKFLAILDEV 329 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P +I++D IVGFPGET++DF+AT+D+V+K + A++F+YSPR GTP ++ QV Sbjct: 330 RAKIPHASITTDIIVGFPGETEEDFQATLDVVEKARFTSAYTFQYSPRPGTPAADYENQV 389 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---------G 430 + V + ERL+ LQ+++ E++ N +GQ +E+L++ G K G Sbjct: 390 PKKVVQERYERLMALQERICEEE---NQKFIGQTVELLVQAGGGRKNDATKRMSGRARDG 446 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVK 459 R V GD++ V +T+ K Sbjct: 447 RLVHFTPVGTIDGEIRPGDVVTVEVTEAK 475 >gi|126652507|ref|ZP_01724672.1| YmcB [Bacillus sp. B14905] gi|126590635|gb|EAZ84751.1| YmcB [Bacillus sp. B14905] Length = 514 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 168/446 (37%), Positives = 264/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F++++YGCQMN +D+ M +F GY +++AD+++LNTC IRE A KV+ LG Sbjct: 70 FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEIIEEADVVLLNTCAIRENAENKVFGELGF 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + K ++ ++L+ V GC++Q E +ILR P V++V G +RLP +L+ A Sbjct: 130 LLKYK----RKNPEMLIGVCGCMSQEESVVNKILRSYPHVDMVFGTHNIHRLPNILKEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L R + A++ I GCDKFCT+C+VPYTRG E Sbjct: 186 MSKEMVVEVWSKEGDVIENLP-----KKRLGSIKAWVNIMYGCDKFCTYCIVPYTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++ E R+L G EI LLGQNVNA+ GK + + DL+ +L +I + R+ Sbjct: 241 SRRPEEIIAEVRELAAAGYQEIMLLGQNVNAY-GKDFEDIEYRLGDLMDALRKI-DIPRI 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHPRD D LI+ L+ ++HLPVQSGS+ ILK M R++T + ++++I+ Sbjct: 299 RFTTSHPRDFDDQLIEVLAKRGNLVEHIHLPVQSGSNDILKIMARKYTREHFLTLVEKIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P++ +++D IVG+P ET++ F T+ L ++G+ AF++ YSPR GTP + M++ V Sbjct: 359 AAIPEVTLTTDIIVGYPNETEEQFEETLSLYREVGFEAAFTYIYSPREGTPAAKMVDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 E VK ERL L + + E + G+++EVL+E K + L G + + V + Sbjct: 419 EEVKKERLQRLNEVVGEYSRKALERLNGEVVEVLVEGTSKRRDDVLAGYTRKNRLVNFKA 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG ++KV+I + +L GE + Sbjct: 479 PAEVIGQLVKVKIIETTSYSLTGEFL 504 >gi|332704873|ref|ZP_08424961.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Desulfovibrio africanus str. Walvis Bay] gi|332555022|gb|EGJ52066.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Desulfovibrio africanus str. Walvis Bay] Length = 474 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 173/450 (38%), Positives = 262/450 (58%), Gaps = 20/450 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + ++GCQMNV DS + S+G++ + AD+I++NTC +R+K +KVYS LGR Sbjct: 32 FHILTFGCQMNVGDSQWLSRALRSRGWQETTD-EQADVIIINTCSVRDKPEQKVYSLLGR 90 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + ++ ++E G V V GCVAQ G R P V +V G +P+ LER Sbjct: 91 LASI----VRETG-AFVAVGGCVAQQIGAGFWNRFPFVRLVFGTDGVAGVPQALERLAST 145 Query: 147 KRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 R+ + D+S E D + +AF+TI +GC+ FC +C+VPY RG + S Sbjct: 146 PRLRLSLLDFSEEYVERGQDFPDASVS----PSAFVTIMQGCNNFCAYCIVPYVRGRQKS 201 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+ + ++ E LI G EITLLGQNVN++ G+ G+ +F+ LL ++ + GL RLR Sbjct: 202 RTSASIISECESLIARGAREITLLGQNVNSY-GQDAGGDGLSFTQLLRRVAVLPGLARLR 260 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D++ ++ A G+L+ L P LHLP+QSGSD +L M R++ Y I+ R+R Sbjct: 261 FVTSHPKDIAPEVVAAFGELEQLCPCLHLPMQSGSDAVLARMGRKYDRARYLDIVRRLRQ 320 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RP + +++D IVGFPGET+ DFRATMD+++++ + ++FSFKYS R G M +V E Sbjct: 321 ARPGMVLTTDIIVGFPGETEQDFRATMDVLEEVRFERSFSFKYSDRPGVAAERMAFKVPE 380 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLV--GRSPWLQSV-- 438 VKAERL Q + E A G+ + VL+E+ K ++G L GR P + V Sbjct: 381 EVKAERLASFQARQAELTAEDLRAQEGRRVSVLLEELSKRQDEGGLSWRGREPGGRVVDI 440 Query: 439 -VLNSKNHNIGDIIKVRITDVKISTLYGEL 467 V++ G + VRI+ + +L GE+ Sbjct: 441 PVIDGGPDLTGALATVRISLARKHSLLGEM 470 >gi|297571230|ref|YP_003697004.1| RNA modification enzyme, MiaB family [Arcanobacterium haemolyticum DSM 20595] gi|296931577|gb|ADH92385.1| RNA modification enzyme, MiaB family [Arcanobacterium haemolyticum DSM 20595] Length = 514 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 162/426 (38%), Positives = 261/426 (61%), Gaps = 34/426 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQG----------YERVNSMDD--ADLIVLNTCHIRE 74 + V++ GCQMNV+DS RM + G R D AD++V+NTC +RE Sbjct: 13 YAVRTLGCQMNVHDSERMAGLLDQAGIVPVELVPEKAARATEAGDQGADVLVINTCSVRE 72 Query: 75 KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134 AA K++ LG+++ +K++R D+ + V GC+AQ + I++R+P V+VV+G Sbjct: 73 NAANKLFGHLGQLKAVKDAR----PDMQIAVGGCLAQQMRDGIVKRAPWVDVVLGTHNLD 128 Query: 135 RLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193 LP LLERAR K+ V+ + S++ L +R+ A+++I GC+ CTFC Sbjct: 129 VLPALLERARHNKKAAVEIEESLKVFPSTLPT-----HRESAYAAWVSISVGCNNTCTFC 183 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 +VP+ RG E R +++ E ++ G E+TLLGQNVN++ G G G++ F+ LL + Sbjct: 184 IVPHLRGKERDRRPGEILSEVEAVVSEGAIEVTLLGQNVNSY-GVGF-GDRGAFAKLLRA 241 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 +I GL R+R+T+ HP +D +I A + +MP LH+P+QSGSDR+L++M R + + Sbjct: 242 CGDIDGLERVRFTSPHPAAFTDDVIDAMAETPNVMPTLHMPLQSGSDRVLRAMRRSYRSA 301 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 ++ I+DR+R P+ AI++D IVGFPGET++DF+AT+D+V+K +A AF+F YSPR GT Sbjct: 302 KFLGILDRVRERIPNAAITTDIIVGFPGETEEDFQATLDVVEKSRFASAFTFLYSPRPGT 361 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----G 426 P ++M +QV +V +E RL+ LQ ++ ++ N +G+ ++VL+ G K Sbjct: 362 PAADMEDQVPADVASERYQRLIALQNRITLEE---NQKLIGERVDVLVSSDGGRKDASTS 418 Query: 427 KLVGRS 432 ++ GR+ Sbjct: 419 RITGRA 424 >gi|229890689|sp|Q8FPD5|MIAB_COREF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 524 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 159/449 (35%), Positives = 257/449 (57%), Gaps = 27/449 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + GY D DLIV NTC +RE A +++Y LG Sbjct: 29 YEVRTFGCQMNVHDSERLSGLLEEAGYTAAGEGDTPDLIVFNTCAVRENADQRLYGTLGN 88 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R +K + + + V GC+AQ + + +++++P V+VV G LP LL RA Sbjct: 89 LRAVKENHPG----MQIAVGGCLAQKDKDTVVKKAPWVDVVFGTHNIASLPTLLNRAEHN 144 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++ + + D E+ V R+ ++++ GC+ CTFC+VP RG E R Sbjct: 145 QKA---EVEIVDSLEQFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRR 200 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLVR 262 ++ E + L+D GV E+TLLGQNVNA+ +D E + FS LL + +I+GL R Sbjct: 201 PGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFVDPELERDRSAFSKLLRACGDIEGLER 260 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP + + +I A + + P LH+P+QSGSDR+LK M R + + ++ I+D + Sbjct: 261 VRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDRVLKEMRRSYRSAKFLAILDEV 320 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P +I++D IVGFPGET++DF+AT+D+V+K + A++F+YSPR GTP ++ QV Sbjct: 321 RAKIPHASITTDIIVGFPGETEEDFQATLDVVEKARFTSAYTFQYSPRPGTPAADYENQV 380 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---------G 430 + V + ERL+ LQ+++ E++ N +GQ +E+L++ G K G Sbjct: 381 PKKVVQERYERLMALQERICEEE---NQKFIGQTVELLVQAGGGRKNDATKRMSGRARDG 437 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVK 459 R V GD++ V +T+ K Sbjct: 438 RLVHFTPVGTIDGEIRPGDVVTVEVTEAK 466 >gi|311030160|ref|ZP_07708250.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp. m3-13] Length = 514 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 165/411 (40%), Positives = 247/411 (60%), Gaps = 14/411 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 V ++F++++YGCQMN +D+ M +F + GYE +++DAD+I+LNTC IRE A KV+ Sbjct: 66 VGKKFYIRTYGCQMNEHDTEVMAGIFLALGYEATYTVNDADVILLNTCAIRENAENKVFG 125 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140 LG ++ LK SR LL+ V GC++Q E +IL+ V+++ G +RLP +L Sbjct: 126 ELGHLKTLKKSR----PGLLIGVCGCMSQEESVVNKILKTYQQVDMIFGTHNIHRLPNIL 181 Query: 141 ERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + A K +V +S E D E L NRK + A++ I GCDKFCT+C+VPYTR Sbjct: 182 KDAYMSKEMVIEVWSKEGDVIENLP-----KNRKGEIKAWVNIMYGCDKFCTYCIVPYTR 236 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR ++ E R L G EITLLGQNVNA+ GK + K DL+ + +I Sbjct: 237 GKERSRRPEDIIQEVRHLAAQGYKEITLLGQNVNAY-GKDFEDIKYGLGDLMDEIRKID- 294 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+TTSHPRD D L++ L+ ++HLPVQSGS ILK M R++ Y +++ Sbjct: 295 IPRIRFTTSHPRDFDDRLVEVLAKGGNLLDHIHLPVQSGSSEILKLMARKYDRERYLELV 354 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +I++ P+ ++++D IVGFP ET++ F TM L ++ + A++F YSPR GTP + M+ Sbjct: 355 GKIKAAMPNASLTTDIIVGFPNETEEQFEETMSLYREVEFDTAYTFIYSPREGTPAAKMV 414 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 + V VK +RL L + E GQI+EVL+E K+ +++ Sbjct: 415 DNVPLEVKKDRLQRLNALVNEISAKKLKEYEGQIVEVLVEGESKKNPEVLA 465 >gi|295836161|ref|ZP_06823094.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB74] gi|197695257|gb|EDY42190.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB74] Length = 513 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 173/454 (38%), Positives = 264/454 (58%), Gaps = 29/454 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM---DDADLIVLNTCHIREKAAEKVYSF 83 + +++YGCQMNV+DS R+ + GY R DAD++V NTC +RE A ++Y Sbjct: 22 YEIRTYGCQMNVHDSERLAGLLEGAGYVRAPESAGDSDADVVVFNTCAVRENADNRLYGN 81 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+ K R + + V GC+AQ + + I+ R+P V+VV G +LP LLERA Sbjct: 82 LGRLAPKKTERP----GMQIAVGGCLAQKDRQTIVDRAPWVDVVFGTHNIGKLPVLLERA 137 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + V+ S+E L R+ A++++ GC+ CTFC+VP RG E Sbjct: 138 RVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRGKE 192 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + ++GL Sbjct: 193 KDRRPGDILAEVEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGRVEGLE 249 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HPRD +D +I A + +MP LH+P+QSGSD +L++M R + Y II++ Sbjct: 250 RVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQDRYLGIIEK 309 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ PD AIS+D IVGFPGET++DF T+ +V + +A AF+F+YS R GTP + M +Q Sbjct: 310 VRAAIPDAAISTDIIVGFPGETEEDFEQTLHVVREARFAAAFTFQYSKRPGTPAAEMDDQ 369 Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434 + + V + ERL+ LQ+++ ++ N VG+ ++V++ E G++ G +L GR+P Sbjct: 370 IPKEVVQKRYERLVALQEEISWEE---NKKQVGRTLDVMVAEGEGRKDGATQRLSGRAPD 426 Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 + V + GD++ V IT L E Sbjct: 427 NRLVHFTKPQEPVRPGDVVTVDITYAAPHHLLAE 460 >gi|311744192|ref|ZP_07717997.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aeromicrobium marinum DSM 15272] gi|311312547|gb|EFQ82459.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aeromicrobium marinum DSM 15272] Length = 487 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 171/439 (38%), Positives = 260/439 (59%), Gaps = 23/439 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS R+ + + GYE V + DL+V NTC +RE A K+Y LG Sbjct: 5 YEVRTYGCQMNVHDSERLSGLLETAGYEPVGA-GTPDLVVFNTCAVRENADNKLYGNLGH 63 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + ++K + + + V GC+AQ + + I RR+P V+VV G LP LLERAR Sbjct: 64 VASVKAAH----PGMQIAVGGCLAQKDRDTITRRAPYVDVVFGTHNIGSLPVLLERARVA 119 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + S + E L + KR A+++I GC+ CTFC+VP RG E Sbjct: 120 EE------SQVEILESLEVFPSTLPTKRDSVFAAWVSISVGCNNTCTFCIVPALRGKEKD 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263 R V+ E L+ +GV E+TLLGQNVNA+ G++ G+ F+ LL + I+GL R+ Sbjct: 174 RRPGDVLAEIEALVADGVVEVTLLGQNVNAY---GVEFGDSQAFAKLLRACGRIEGLERV 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP+D +D +I A + +MP LH+P+QSGSDR+L++M R + ++ IIDR+R Sbjct: 231 RFTSPHPKDFTDDVIAAMAETPTVMPQLHMPLQSGSDRVLRAMRRSYRREKFLGIIDRVR 290 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PD AI++D IVGFPGET++DF T+++V + AF+F+YS R GTP +++ +Q+ Sbjct: 291 AAMPDAAITTDIIVGFPGETEEDFVQTLEVVRAARFTSAFTFQYSRRPGTPAADLPDQLP 350 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKG---KLVGRSPWLQSVV 439 + V ER L + + E + G+++E+L+ H GK+ G +L GR+ + V Sbjct: 351 KAVVQERYDRLVEVVDEVAWAEARTQEGRVVELLVSDHEGKKDGATRRLTGRARDNRLVH 410 Query: 440 LNSKNHNI--GDIIKVRIT 456 H I GD++ VRIT Sbjct: 411 FVPGEHEIRPGDVVDVRIT 429 >gi|115379590|ref|ZP_01466678.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Stigmatella aurantiaca DW4/3-1] gi|115363417|gb|EAU62564.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Stigmatella aurantiaca DW4/3-1] Length = 443 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 179/423 (42%), Positives = 257/423 (60%), Gaps = 25/423 (5%) Query: 52 GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ 111 Y + D+ADLI+LNTC IREKA +K+ S LGR R +K SR L+ V GCVAQ Sbjct: 5 AYAPTPTPDNADLIILNTCAIREKAEDKMLSALGRYRPVKVSR-----GALIGVGGCVAQ 59 Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGKRVVDTDY--SVEDKFERLSIVDG 168 E + +L++ P V+ V GP +LPE++ R ++ +RVV+T + S E F R D Sbjct: 60 QEKDRLLKKVPYVDFVFGPDNIGKLPEIITRVSQERERVVETAFVDSEEYVFPR---ADP 116 Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228 +R + VT F+T+ +GCD C+FCVVP+TRG E+SR+ V+ E L G+ E+TL+ Sbjct: 117 ETSRGK-VTEFVTVMKGCDNVCSFCVVPHTRGREVSRAFPDVLTEVADLARVGLREVTLI 175 Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288 GQNVN++RG +F+ LL +E+ G+ R+R+TTSHP D+SD LI A + Sbjct: 176 GQNVNSYRGG------ISFAQLLLRTAEVPGIERVRFTTSHPHDLSDELIDAFRTQPKIA 229 Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348 P+ HLPVQ GSDRILK M R +T +Y + ++++R+ RP IA+++D IVGFPGET++DF Sbjct: 230 PHFHLPVQCGSDRILKMMRRDYTVVQYLERLEKLRAARPGIAVTTDIIVGFPGETEEDFE 289 Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ----VDENVKAERLLCLQKKLREQQVS 404 TM L +++ Y FSF +SPR T G+ + E+ V VK RL LQK R+ Sbjct: 290 MTMQLTEQVRYESQFSFIFSPRPKT-GAALREKDWGSVPHEVKIARLERLQKVQRKICGE 348 Query: 405 FNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463 + VG +EVL+E H K + GK GRSP ++V + + G I+KV + + L Sbjct: 349 IAVSQVGLEVEVLVEGHSKYDAGKRFGRSPENRTVNFDG-DAPAGAIVKVLVDRATPNHL 407 Query: 464 YGE 466 G+ Sbjct: 408 MGK 410 >gi|120437909|ref|YP_863595.1| tRNA-i(6)A37 modification enzyme MiaB [Gramella forsetii KT0803] gi|229890549|sp|A0M7D3|MIAB_GRAFK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|117580059|emb|CAL68528.1| tRNA-i(6)A37 modification enzyme MiaB [Gramella forsetii KT0803] Length = 481 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 180/462 (38%), Positives = 265/462 (57%), Gaps = 28/462 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGC MN DS + + +G+ ++++ADL+++NTC IREKA + V L Sbjct: 24 RKLFIESYGCAMNFSDSEIVASILSKEGFNTTQNLEEADLVLVNTCSIREKAEQTVRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K RI G + V V GC+A+ ++ L IV++VVGP Y LP L+ Sbjct: 84 EKYNAVK--RINPG--MKVGVLGCMAERLKDKFLEEEKIVDLVVGPDAYKDLPNLINEVE 139 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ ++ S E+ + +S V N GV+AF++I GCD CTFCVVP+TRG E S Sbjct: 140 EGRDAINVILSKEETYGDISPVRLQSN---GVSAFVSITRGCDNMCTFCVVPFTRGRERS 196 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDG--------EKCT---FSDLL 251 R +V+E L G EITLLGQNV++ W G GL +K T F+ LL Sbjct: 197 RDPQSIVEEVNDLAAKGYKEITLLGQNVDSYLWYGGGLKKDFKNATEIQKATATNFAALL 256 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++E + +R+R++TS+P+DM+ +I+A + Y+HLPVQSGSDRILK MNR HT Sbjct: 257 KLVAEAQPKMRIRFSTSNPQDMTLDVIEAMAAYRNICNYIHLPVQSGSDRILKKMNRLHT 316 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY +ID I+ + P+ IS D I GFP ET++D + T+ L++ + Y + F YS R Sbjct: 317 REEYFTLIDNIKKMIPNCGISHDLITGFPTETEEDHQDTLSLMEYVKYDFGYMFTYSERP 376 Query: 372 GTPGSNMLE-QVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 GT LE + E K RL + LQ+K +Q ++ +G +EVLIEK K+ K Sbjct: 377 GTTAERKLEDDIPEETKKRRLQEIVDLQQKHSKQNT---NSVIGTTVEVLIEKESKKSNK 433 Query: 428 -LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 GR+ V + +N+ IGD +KV+I D +TL GE + Sbjct: 434 HWSGRNERNTVTVFSKENYQIGDFVKVKIHDCTSATLIGEPI 475 >gi|25028399|ref|NP_738453.1| hypothetical protein CE1843 [Corynebacterium efficiens YS-314] gi|23493684|dbj|BAC18653.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 600 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 159/449 (35%), Positives = 257/449 (57%), Gaps = 27/449 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + GY D DLIV NTC +RE A +++Y LG Sbjct: 105 YEVRTFGCQMNVHDSERLSGLLEEAGYTAAGEGDTPDLIVFNTCAVRENADQRLYGTLGN 164 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R +K + + + V GC+AQ + + +++++P V+VV G LP LL RA Sbjct: 165 LRAVKENHPG----MQIAVGGCLAQKDKDTVVKKAPWVDVVFGTHNIASLPTLLNRAEHN 220 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++ + + D E+ V R+ ++++ GC+ CTFC+VP RG E R Sbjct: 221 QKA---EVEIVDSLEQFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRR 276 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLVR 262 ++ E + L+D GV E+TLLGQNVNA+ +D E + FS LL + +I+GL R Sbjct: 277 PGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFVDPELERDRSAFSKLLRACGDIEGLER 336 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP + + +I A + + P LH+P+QSGSDR+LK M R + + ++ I+D + Sbjct: 337 VRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDRVLKEMRRSYRSAKFLAILDEV 396 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P +I++D IVGFPGET++DF+AT+D+V+K + A++F+YSPR GTP ++ QV Sbjct: 397 RAKIPHASITTDIIVGFPGETEEDFQATLDVVEKARFTSAYTFQYSPRPGTPAADYENQV 456 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---------G 430 + V + ERL+ LQ+++ E++ N +GQ +E+L++ G K G Sbjct: 457 PKKVVQERYERLMALQERICEEE---NQKFIGQTVELLVQAGGGRKNDATKRMSGRARDG 513 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVK 459 R V GD++ V +T+ K Sbjct: 514 RLVHFTPVGTIDGEIRPGDVVTVEVTEAK 542 >gi|302554591|ref|ZP_07306933.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces viridochromogenes DSM 40736] gi|302472209|gb|EFL35302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces viridochromogenes DSM 40736] Length = 508 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 176/456 (38%), Positives = 266/456 (58%), Gaps = 28/456 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFL 84 + V++YGCQMNV+DS R+ + GY R D AD++V NTC +RE A K+Y L Sbjct: 16 YEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGEADVVVFNTCAVRENADNKLYGNL 75 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G + K R + + V GC+AQ + + I++++P V+VV G +LP LLERAR Sbjct: 76 GHLAPKKAGRP----GMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERAR 131 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + V+ S+E L R+ A+++I GC+ CTFC+VP RG E Sbjct: 132 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 R ++ E L+ +GV EITLLGQNVNA+ G D G++ FS LL + +I+GL R Sbjct: 187 DRRPGDILAEIEALVADGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGKIEGLER 243 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HPRD +D +I A + +MP LH+P+QSGSD +LK+M R + Y II+++ Sbjct: 244 VRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKV 303 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P AIS+D IVGFPGET++DF T+ +V + +AQAF+F+YS R GTP + M Q+ Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRSPWL 435 + V + ERL+ LQ+++ ++ N VG+ +E+++ E G++ +L GR+P Sbjct: 364 PKKVVQERYERLVALQEEISWEE---NKKQVGRTLELMVAEGEGRKDDSTHRLSGRAPDN 420 Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 + V + + GD++ V IT L E V Sbjct: 421 RLVHFTKPDQEVRPGDVVTVEITYAAPHHLLAEGAV 456 >gi|298483271|ref|ZP_07001450.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. D22] gi|298270588|gb|EFI12170.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. D22] Length = 457 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 166/449 (36%), Positives = 264/449 (58%), Gaps = 20/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD + +NTC IR+ A +K+ + L Sbjct: 20 KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK K+ L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 80 EFFHSLK----KKKKRLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 189 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + GE TF LL +++E VR Sbjct: 190 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVR 249 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++T Y + I Sbjct: 250 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 309 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 + + PD +++D GF ET++D ++ L++ GY AF FKYS R GT S LE Sbjct: 310 KRIIPDCGLTTDIFSGFHSETEEDHAMSLSLMEACGYDAAFMFKYSERPGTYASKHLEDN 369 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N C+G+ EVL+E K + +L GR+ + Sbjct: 370 VPEEVKVHRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 426 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466 VV + H +GD + VR+T+ +TL GE Sbjct: 427 VVFDRGTHRVGDFVNVRVTEASSATLKGE 455 >gi|293400769|ref|ZP_06644914.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305795|gb|EFE47039.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 479 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 176/449 (39%), Positives = 265/449 (59%), Gaps = 16/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++++++YGCQ N DS + + + V + ADLI+LNTC IR+ A +KV + Sbjct: 43 KKYYLRTYGCQANERDSETLAGILEELMFTPVEHPEQADLILLNTCAIRKNAEDKVLGEI 102 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK S DL+ + GC+AQ E + +L + VN++ G +RLPELL Sbjct: 103 GSLKRLKRS----NPDLIFGLCGCMAQEEDVVQVLLEKYRHVNLIFGTHNLHRLPELLYE 158 Query: 143 ARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G KR V+ + E L + G ++ A++ I GCDKFCT+C+VPYTRG Sbjct: 159 VMVGHKRSVEVLSKEGEVIENLPVRRFGKHK-----AWVNIMYGCDKFCTYCIVPYTRGK 213 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR++ V+ E R+L +G EITLLGQNVN++ GK L E F+ LL ++I G+ Sbjct: 214 ERSRAMEDVLQEIRQLKQDGYKEITLLGQNVNSY-GKDLHIEG-GFAKLLEETAKI-GIE 270 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP D SD +I D +MP++HLPVQSG D ILK M RR+T+ +Y + + Sbjct: 271 RIRFTTSHPWDFSDEMIDVIARFDNIMPFIHLPVQSGDDEILKIMGRRYTSAQYLTLFHK 330 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P+ AIS+D IVGFP E+++ F+ T+DLV + + AF+F YSPR GTP + M + Sbjct: 331 IKERMPECAISTDIIVGFPNESEEQFQHTLDLVKECQFDNAFTFIYSPREGTPAARMADS 390 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVL 440 V VK RL L N+A +G++++VL++ K+K + G + + V Sbjct: 391 VSLEVKQRRLAELNACWNHYAHVKNEAYLGKVVKVLVDGASKKKANVWSGYTETNKLVNF 450 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 ++ GDI+KV+IT K +L GE ++ Sbjct: 451 TGEHVTAGDIVKVKITACKTFSLDGEQIL 479 >gi|294782966|ref|ZP_06748292.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 1_1_41FAA] gi|294481607|gb|EFG29382.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 1_1_41FAA] Length = 435 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 164/441 (37%), Positives = 266/441 (60%), Gaps = 16/441 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV +S +++ +F + GY+ DDAD + LNTC +RE AA +++ LG +++L Sbjct: 8 TYGCQMNVNESAKIKKIFQNLGYDVTEETDDADAVFLNTCTVREGAATQIFGKLGELKSL 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K E ++ V GC AQ +GEE++++ PI+++V+G Q R+P+ +E+ + Sbjct: 68 K-----EKKGTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIENNESSH 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + ED E +D + + TA ++I GC+ FCTFC+VPY RG E S L ++ Sbjct: 123 EVYTDNED--ELPPRLDAEFASDQ--TASISITYGCNNFCTFCIVPYVRGRERSVPLEEI 178 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V + + ++ G EI LLGQNVN++ +G+ F+ LL + +++G +R+ + HP Sbjct: 179 VKDVEQYVNKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLEEICKVEGDYIVRFVSPHP 236 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 RD +D +I D + LHLP+QSGS +IL+ M R +T +Y ++D+I+S PD+A Sbjct: 237 RDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKSKIPDVA 296 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 +++D IVGFPGET++DF T+D+V+K+ + ++ F YS R GT + M Q+DENVK ER Sbjct: 297 LTADIIVGFPGETEEDFLDTVDVVEKVSFDNSYMFMYSIRKGTKAATMDNQIDENVKKER 356 Query: 391 LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNI 447 L L K + + SFN++ +++ VL+E K+ K L GR+ + V+ Sbjct: 357 LQRLMK--VQNECSFNESSKYKDKVVRVLVEGPSKKNKEVLSGRTSTNKIVLFKGDTALK 414 Query: 448 GDIIKVRITDVKISTLYGELV 468 G + V+I + K TLYG++V Sbjct: 415 GQFVDVKINECKTWTLYGDIV 435 >gi|260907232|ref|ZP_05915554.1| RNA modification enzyme, MiaB family protein [Brevibacterium linens BL2] Length = 498 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 167/446 (37%), Positives = 264/446 (59%), Gaps = 25/446 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ + VK+YGCQMNV+DS R+ + GY ++ D AD+IV NTC +RE A ++Y Sbjct: 15 PRSYEVKTYGCQMNVHDSERLSGLLDDAGYVPADTDDQADVIVFNTCAVRENADNRLYGN 74 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG++ ++K + D + V GC+AQ + + I++++P V+VV G LP LLERA Sbjct: 75 LGQLAHVK----ERNPDFQIAVGGCMAQKDRDTIVKKAPWVDVVFGTHNMGSLPALLERA 130 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGI 201 R + + VE E L + +R + +++I GC+ CTFC+VP RG Sbjct: 131 RHNQ-----EAQVE-ILESLDVFPSTLPSRRESQHSGWVSISVGCNNSCTFCIVPSLRGK 184 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E R ++ E L+ +GV E+TLLGQNVN++ + D K F+ LL ++ +++G+ Sbjct: 185 EKDRRPGDILAEVEALVADGVVEVTLLGQNVNSYGSEFRD--KGAFAKLLRAVGKVEGIE 242 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP SD +I A + +MP LH+P+QSGSD ILKSM R + + +I+D Sbjct: 243 RVRFTSPHPASFSDDVIDAMAETPAVMPQLHMPLQSGSDSILKSMRRSYRTSRFMRILDS 302 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P+ AI++D IVGFPGET++DF TMD+V + ++QAF+F+YS R GTP + M +Q Sbjct: 303 VREKIPNAAITTDIIVGFPGETEEDFLGTMDIVRRARFSQAFTFQYSIRPGTPAATMDDQ 362 Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQS 437 V +++ + ERL LQ ++ ++ N A +G+ +EVL+ + + +L GRS + Sbjct: 363 VPKHIVQERFERLTALQDEISWEE---NTAQIGREVEVLVTTRPHDDSPRLTGRSADNRL 419 Query: 438 VVL----NSKNHNIGDIIKVRITDVK 459 V + + GD + +TD K Sbjct: 420 VHVGIPDGEQMPRPGDFVTATVTDAK 445 >gi|282850159|ref|ZP_06259538.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC 17745] gi|282579652|gb|EFB85056.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC 17745] Length = 437 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 165/450 (36%), Positives = 259/450 (57%), Gaps = 21/450 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++ +YGCQMN DS R+ S GY +++ ADLI+LNTC +RE A KVY + Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++ LK + +L++ V GC+AQ E+ +R+P +++V+G + E++E + Sbjct: 62 GELKRLK----RNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQ 117 Query: 145 FGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G VD D SV + E + +G + A++ I GC+KFCT+C+VP+ RG Sbjct: 118 HGHTHQISVDMDNSVLPELE--AKPNGSF------YAWVPIMNGCNKFCTYCIVPHVRGR 169 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGL 260 EISR + +V E L G EITLLGQNVN++ GLD + T F L+ +L I G+ Sbjct: 170 EISRPVEAIVKEVTDLGVKGFKEITLLGQNVNSY---GLDFKDGTDFGTLVDALDGIPGI 226 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RY TSHP+DMS +I A G ++ +LHLP+QSGS+RILK MNR +T Y++++ Sbjct: 227 ERIRYMTSHPQDMSKSMIDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLS 286 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R D+ +++D IVGFPGET++DF+AT+ L+ + Y A++F YS R GTP + M + Sbjct: 287 YCREKIKDVVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDD 346 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439 Q+ E +K RL L E N GQ+ ++++E +++ GR+ + V+ Sbjct: 347 QIPEEIKRVRLQILMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVL 406 Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + +IG + I + YG ++ Sbjct: 407 FPKDDSLSIGQTVPAHIDKAQTWVCYGSIL 436 >gi|239928542|ref|ZP_04685495.1| hypothetical protein SghaA1_09973 [Streptomyces ghanaensis ATCC 14672] Length = 496 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 177/453 (39%), Positives = 262/453 (57%), Gaps = 28/453 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84 + V++YGCQMNV+DS R+ + GY R S DAD++V NTC +RE A K+Y L Sbjct: 7 YEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNKLYGNL 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G + K R + + V GC+AQ + + I++R+P V+VV G +LP LLERAR Sbjct: 67 GHLAPKKARRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 122 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + V+ S+E L R+ A+++I GC+ CTFC+VP RG E Sbjct: 123 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 177 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + I GL R Sbjct: 178 DRRPGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGRIDGLER 234 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HPRD +D +I A + +MP LH+P+QSGSD +LK+M R + Y II+++ Sbjct: 235 VRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDAVLKAMRRSYRQERYLGIIEKV 294 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P AIS+D IVGFPGET++DF T+ +V + +AQAF+F+YS R GTP + M Q+ Sbjct: 295 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 354 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRSPWL 435 + V + ERL+ LQ+++ ++ N VG+ +E+++ E G++ +L GR+P Sbjct: 355 PKKVVQERYERLVALQEEISWEE---NKKQVGRTLELMVAEGEGRKDDTTHRLSGRAPDN 411 Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 + V + GD++ V IT L E Sbjct: 412 RLVHFTKPEQEVRPGDVVTVEITYAAPHHLLAE 444 >gi|224014702|ref|XP_002297013.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220968393|gb|EED86741.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 432 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 166/403 (41%), Positives = 245/403 (60%), Gaps = 17/403 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GCQMN+ DS R+E S G + + D+IVLNTC IR+ A +KVYS+LG Sbjct: 2 GCQMNLADSERIEGQLMSLGIRPLGEDEKPDVIVLNTCSIRDHAEQKVYSYLGP----HA 57 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 R + G D+ ++VAGCVAQ EG+ +LRR P +++V+GPQ R+ +LLE G +VV T Sbjct: 58 KRKRAGEDITIIVAGCVAQQEGQSLLRRIPEIDLVMGPQYANRISDLLEDVANGNQVVAT 117 Query: 153 DYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + S I++ +RG V A++ + GC++ CT+C+VP TRG+E SR + + Sbjct: 118 EAS--------HIMEDSTKPRRGSDVCAWVNVIYGCNERCTYCIVPTTRGVEQSRPVESI 169 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 VDE +KL+++G E+TLLGQN++A+ L K FSDLL + + GL RLR+ TSHP Sbjct: 170 VDEVKKLVESGYKEVTLLGQNIDAYGRDMLPKRK--FSDLLRIVGGVDGLERLRFVTSHP 227 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 R MS ++ A + Y H+P QSGS+ ILK+M R HT ++ I+DRIR PD A Sbjct: 228 RYMSLGVVDAVAETPTACEYFHVPFQSGSNDILKAMGRGHTREKFLGIVDRIRQRLPDAA 287 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I++D IVGFPGET+ DF+ T+DL++ + + + YSPR TP S Q+ E VK +R Sbjct: 288 ITADVIVGFPGETEQDFQDTLDLMETVVFDNVNTAAYSPRPNTPASTWENQLSEEVKQDR 347 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432 L + + +G+++EVL+E+ K +++GR+ Sbjct: 348 LQRINELNLRHASERRARMMGRVVEVLVEERNVKVPTQVMGRT 390 >gi|323356750|ref|YP_004223146.1| 2-methylthioadenine synthetase [Microbacterium testaceum StLB037] gi|323273121|dbj|BAJ73266.1| 2-methylthioadenine synthetase [Microbacterium testaceum StLB037] Length = 515 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 161/419 (38%), Positives = 258/419 (61%), Gaps = 26/419 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ + V+++GCQMNV+DS R+ S GY R ++ +AD+IV+NTC +R+ AA K+Y Sbjct: 23 PRTYEVRTFGCQMNVHDSERLSGSLESAGYVRADAGAEADVIVINTCAVRDNAAGKLYGT 82 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG +++ K++ + + V GC+AQ + + + +++P V+VV G LP +LERA Sbjct: 83 LGHLKSRKDAH----AGMQIAVGGCLAQMDKDAVQQKAPWVDVVFGTHNMGSLPGMLERA 138 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGI 201 R + + +E E L I KR + +++I GC+ CTFC+VP RG Sbjct: 139 RH-----NGEAELE-ILESLEIFPSTLPTKRDSVHSGWVSISVGCNNTCTFCIVPSLRGK 192 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 E R +++E R L+D+G E+TLLGQNVN++ G++ G++ F LL + EI+GL Sbjct: 193 EKDRRPGDILNEIRLLVDDGAIEVTLLGQNVNSY---GVEFGDRLAFGKLLRAAGEIEGL 249 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP +D +I A + +MP LH+P+QSGSDRILK+M R + + ++ I+D Sbjct: 250 ERIRFTSPHPAAFTDDVIAAMAETPAVMPQLHMPLQSGSDRILKAMRRSYRSEKFLGILD 309 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R P AI++D IVGFPGET++DF+ T+ +V+ ++ AF+F+YS R GTP + M + Sbjct: 310 RVRERIPHAAITTDIIVGFPGETEEDFQETLRVVEAARFSSAFTFQYSIREGTPAATMAD 369 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432 QV + V + ERL+ LQ ++ ++ N +G+ +EVL+ K E +L GR+ Sbjct: 370 QVPKAVVQERYERLIALQDRIAAEE---NQKQLGRSLEVLVSAGEGKKDAETHRLTGRA 425 >gi|291436867|ref|ZP_06576257.1| RNA modification enzyme [Streptomyces ghanaensis ATCC 14672] gi|291339762|gb|EFE66718.1| RNA modification enzyme [Streptomyces ghanaensis ATCC 14672] Length = 505 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 177/453 (39%), Positives = 262/453 (57%), Gaps = 28/453 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84 + V++YGCQMNV+DS R+ + GY R S DAD++V NTC +RE A K+Y L Sbjct: 16 YEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNKLYGNL 75 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G + K R + + V GC+AQ + + I++R+P V+VV G +LP LLERAR Sbjct: 76 GHLAPKKARRP----GMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 131 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + V+ S+E L R+ A+++I GC+ CTFC+VP RG E Sbjct: 132 VQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + I GL R Sbjct: 187 DRRPGDILAEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGRIDGLER 243 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HPRD +D +I A + +MP LH+P+QSGSD +LK+M R + Y II+++ Sbjct: 244 VRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDAVLKAMRRSYRQERYLGIIEKV 303 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P AIS+D IVGFPGET++DF T+ +V + +AQAF+F+YS R GTP + M Q+ Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRSPWL 435 + V + ERL+ LQ+++ ++ N VG+ +E+++ E G++ +L GR+P Sbjct: 364 PKKVVQERYERLVALQEEISWEE---NKKQVGRTLELMVAEGEGRKDDTTHRLSGRAPDN 420 Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 + V + GD++ V IT L E Sbjct: 421 RLVHFTKPEQEVRPGDVVTVEITYAAPHHLLAE 453 >gi|288556902|ref|YP_003428837.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus pseudofirmus OF4] gi|288548062|gb|ADC51945.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus pseudofirmus OF4] Length = 541 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 172/446 (38%), Positives = 256/446 (57%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +++YGCQMN +DS M + G+ + DAD+I+LNTC IRE A KV+ +G Sbjct: 100 FHIRTYGCQMNTHDSENMAGLLTEMGFTETDDTKDADVILLNTCAIRENAENKVFGEIGH 159 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE ++++ V GC++Q E I+++ ++++ G +RLP LL+ A Sbjct: 160 LKSLK----KERPEVILGVCGCMSQEENVVNRIMQKHQHIDIIFGTHNIHRLPSLLQNAI 215 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEI 203 +GK +V +S E IV+ ++ G T A++ I GCDKFCT+C+VPYTRG E Sbjct: 216 YGKEMVIEVWSKEG-----DIVENMPRKREGKTQAWVNIMYGCDKFCTYCIVPYTRGKER 270 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R L G EITLLGQNVNA+ GK L L+ + +I + R+ Sbjct: 271 SRLPEDIIDEVRDLARQGYKEITLLGQNVNAY-GKDLKDRDYRLGHLMDDIHKID-IPRV 328 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHPRD D LI L+ ++HLPVQ G+ ILK M R++T +Y ++ +I+ Sbjct: 329 RFTTSHPRDFDDHLISVLSKGGNLVEHIHLPVQHGNSDILKLMARKYTREQYVELAHKIK 388 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P + ++D IVGFP ET++ F T+ LV +I + AF++ YSPR GTP + M + V Sbjct: 389 MAIPKASFTTDLIVGFPNETEEQFEDTLSLVREIEFDSAFTYIYSPREGTPAAKMKDNVP 448 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 VK ERL L + E N Q++EVL+E K+ L GR+ + V Sbjct: 449 MEVKKERLARLNALVNEISAKKNLDYQDQVVEVLVEGESKKDPDVLAGRTRTNRLVNFKG 508 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG+I+ V++ + K +L GELV Sbjct: 509 PKSIIGEIVYVKVNEAKTWSLTGELV 534 >gi|169827222|ref|YP_001697380.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus sphaericus C3-41] gi|229890559|sp|B1HR59|MIAB_LYSSC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|168991710|gb|ACA39250.1| UPF0004 protein [Lysinibacillus sphaericus C3-41] Length = 514 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 168/446 (37%), Positives = 263/446 (58%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F++++YGCQMN +D+ M +F GY +++AD+++LNTC IRE A KV+ LG Sbjct: 70 FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEIIEEADVVLLNTCAIRENAENKVFGELGF 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + K ++ ++L+ V GC++Q E +ILR P V++V G +RLP +L+ A Sbjct: 130 LLKYK----RKNPEMLIGVCGCMSQEESVVNKILRSYPHVDMVFGTHNIHRLPNILKEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L R + A++ I GCDKFCT+C+VPYTRG E Sbjct: 186 MSKEMVVEVWSKEGDVIENLP-----KKRLGSIKAWVNIMYGCDKFCTYCIVPYTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++ E R+L G EI LLGQNVNA+ GK + + DL+ +L +I + R+ Sbjct: 241 SRRPEEIIAEVRELAAAGYQEIMLLGQNVNAY-GKDFEDIEYRLGDLMDALRKI-DIPRI 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHPRD D LI+ L+ ++HLPVQSGS+ ILK M R++T + ++++I+ Sbjct: 299 RFTTSHPRDFDDHLIEVLAKRGNLVEHIHLPVQSGSNDILKIMARKYTREHFLTLVEKIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P++ +++D IVG+P ET++ F T+ L ++G+ AF++ YSPR GTP + M++ V Sbjct: 359 AAIPEVTLTTDIIVGYPNETEEQFEETLSLYREVGFEAAFTYIYSPREGTPAAKMVDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 E VK ERL L + + E + G+++EVL+E K + L G + + V Sbjct: 419 EEVKKERLQRLNEVVGEYSRKALERLNGEVVEVLVEGTSKRRDDVLAGYTRKNRLVNFKG 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG ++KV+I + +L GE + Sbjct: 479 PAEVIGQLVKVKIIETTSYSLTGEFL 504 >gi|160884905|ref|ZP_02065908.1| hypothetical protein BACOVA_02895 [Bacteroides ovatus ATCC 8483] gi|156109940|gb|EDO11685.1| hypothetical protein BACOVA_02895 [Bacteroides ovatus ATCC 8483] Length = 457 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 166/449 (36%), Positives = 264/449 (58%), Gaps = 20/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD + +NTC IR+ A +K+ + L Sbjct: 20 KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK K+ L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 80 EFFHSLK----KKKKRLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 189 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + GE TF LL +++E VR Sbjct: 190 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVR 249 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++T Y + I Sbjct: 250 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 309 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 + + PD +++D GF ET++D ++ L++ GY AF FKYS R GT S LE Sbjct: 310 KRIIPDCGLTTDIFSGFHSETEEDHAMSLSLMEACGYDAAFMFKYSERPGTYASKHLEDN 369 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N C+G+ EVL+E K + +L GR+ + Sbjct: 370 VPEEVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 426 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466 VV + H +GD + VR+T+ +TL GE Sbjct: 427 VVFDRGTHRVGDFVNVRVTEASSATLKGE 455 >gi|126696829|ref|YP_001091715.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT 9301] gi|229890597|sp|A3PED9|MIAB_PROM0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|126543872|gb|ABO18114.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT 9301] Length = 464 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 179/455 (39%), Positives = 268/455 (58%), Gaps = 27/455 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM GY R ++ +ADL++ NTC IR+ A +KVYSFLGR Sbjct: 21 YWITTFGCQMNKADSERMAGTLEKMGYTRADNELNADLVLYNTCTIRDNAEQKVYSFLGR 80 Query: 87 --IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R K R+K +VVAGC+AQ EGE +LRR P +++V+GPQ L LL + Sbjct: 81 QAKRKHKTPRLK------LVVAGCLAQQEGESLLRRVPELDLVMGPQHVNNLENLLGKVD 134 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G +VV T E+ F I R+ + ++ I GC++ C++CVVP RG E S Sbjct: 135 LGNQVVAT----EETFISEDITSA--RRESSICGWVNIIYGCNERCSYCVVPSVRGKEQS 188 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIK 258 R + + E +KL D+ EITLLGQN++A+ G+ L G ++ T +DLLY + ++K Sbjct: 189 RYPNAIKSEIQKLADDNFKEITLLGQNIDAY-GRDLPGTTKEGRKENTLTDLLYYIHDVK 247 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R+R+ TSHPR S LI+A +LD + + H+P QSG+D ILK M+R ++ +Y+ I Sbjct: 248 GIRRIRFATSHPRYFSKRLIQACYELDKVCEHFHIPFQSGNDEILKQMSRGYSIKKYKNI 307 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I+ IRS+ PD +I++D IV FPGET+ ++ T+ L+ +IG+ Q + YS R TP + Sbjct: 308 IENIRSLMPDASITADAIVAFPGETEKQYQDTLKLISEIGFDQVNTAAYSARPNTPAAVW 367 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQ- 436 Q+ E VK RL + + + S N + I VLIE + K +++GR+ + Sbjct: 368 TNQLSEEVKKARLQEINDLVEKTARSRNQRYIDNIESVLIEGLNPKNSSQIMGRTRTNRL 427 Query: 437 SVVLNSKNHN----IGDIIKVRITDVKISTLYGEL 467 + V KN N +GD I VRI + + +L GEL Sbjct: 428 TFVEIPKNINFNFSLGDEINVRINEARPFSLTGEL 462 >gi|225010050|ref|ZP_03700522.1| RNA modification enzyme, MiaB family [Flavobacteria bacterium MS024-3C] gi|225005529|gb|EEG43479.1| RNA modification enzyme, MiaB family [Flavobacteria bacterium MS024-3C] Length = 482 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 170/459 (37%), Positives = 270/459 (58%), Gaps = 22/459 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGC MN DS + + ++GY +++ADL+++NTC IR+KA + V L Sbjct: 24 KKLYIESYGCAMNFSDSEVVASILAAEGYHTTEVLEEADLVLINTCSIRDKAEQTVRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + + +K S + + V V GC+A+ ++L + IV++VVGP Y +P LL+ Sbjct: 84 EKFQAVKRSNPQ----MKVGVLGCMAERLKTKLLEEAKIVDMVVGPDAYKDIPNLLKEVE 139 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V+ S E+ + ++ V N+ +TAF++I GCD CTFCVVP+TRG E S Sbjct: 140 AGRNAVNVILSKEETYGDIAPVRLASNK---ITAFVSITRGCDNMCTFCVVPFTRGRERS 196 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251 R ++ E + L D G E+TLLGQNV++ W G GL D K T FS LL Sbjct: 197 RDPLSILTEIQDLWDKGYKEMTLLGQNVDSYLWYGGGLKKDFNKATQMAQATAVNFSQLL 256 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++ +R+R++TS+P+DM+ +++ + ++HLPVQSGS+RILK+MNR+HT Sbjct: 257 EKVALKFPEMRIRFSTSNPQDMTLDVVRTMAAHSNICKHIHLPVQSGSNRILKAMNRQHT 316 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY +ID IR++ PD AIS D I+GFP ET++D + T+ L++ + Y + + YS R Sbjct: 317 REEYMALIDNIRAIIPDCAISQDMIIGFPNETEEDHKDTLSLMEYVKYDFGYMYSYSDRP 376 Query: 372 GT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429 GT G N+ + + E +K++RL + R+ VG+I VL+E K+ K L+ Sbjct: 377 GTAAGKNLADNIPETLKSKRLAEVIAVQRKHAAMHTQNRVGKIETVLVEGVSKKSEKDLM 436 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 GR+ + VV + + IGD++ V+ITD TL G+ + Sbjct: 437 GRNNYNAVVVFPRETYKIGDLVAVKITDCTSGTLLGKAI 475 >gi|212704632|ref|ZP_03312760.1| hypothetical protein DESPIG_02695 [Desulfovibrio piger ATCC 29098] gi|212672031|gb|EEB32514.1| hypothetical protein DESPIG_02695 [Desulfovibrio piger ATCC 29098] Length = 448 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 173/463 (37%), Positives = 262/463 (56%), Gaps = 39/463 (8%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 ++ F + ++GCQMNV+DS + ++G+ +++A ++V+NTC +REK +KV Sbjct: 1 MIDNSFHIITFGCQMNVHDSQWLARALEARGFCEA-PLEEARVVVVNTCSVREKPEQKVM 59 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGRIR + + + +LV V GCVAQ GE++ R V +V G P+ +E Sbjct: 60 STLGRIRQVTGNSPR----VLVAVTGCVAQQLGEKLFSRQ--VRLVAGSDGISGAPQAIE 113 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVD---------GGYNRKRGVTAFLTIQEGCDKFCTF 192 R +++ RLS++D G + F+ I +GCD FC + Sbjct: 114 RL------------LDEPALRLSLLDFTSHYVEREPGADTPSAPVGFVNIMQGCDNFCAY 161 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 C+VPYTRG + SR ++DE R L+D G EITLLGQNVNA+ G+ G+ +F+ LL Sbjct: 162 CIVPYTRGRQKSRLTPAILDECRHLLDRGAHEITLLGQNVNAF-GRDTHGDGVSFATLLE 220 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 ++ + GL RLRY T HP+DM ++A D+ L P LHLP+Q+GSD +LK M R++ + Sbjct: 221 KVAALPGLKRLRYVTPHPKDMGPEDVRAFADIPQLCPRLHLPLQAGSDAVLKRMGRKYDS 280 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 Y +++ +R RPDIA+S+D IVGFPGET++DF AT++L+ + +FSF YS R G Sbjct: 281 VRYLELVASLRDARPDIALSTDLIVGFPGETEEDFAATLELMRASDFMSSFSFCYSDRPG 340 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG------ 426 T S L+++ +V+ +RLL LQ E + DA VGQ EVL+E + + Sbjct: 341 TRASRFLDKIAPDVQQDRLLRLQALQEELSQRWLDARVGQECEVLLENASRREATADDSL 400 Query: 427 -KLVGRSPW--LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 GR + L V L + +H G ++ RI + K +L E Sbjct: 401 QSWQGRDIYGALVHVPLPAGDHT-GRLVNARIVEAKKHSLVAE 442 >gi|33862596|ref|NP_894156.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Prochlorococcus marinus str. MIT 9313] gi|81577894|sp|Q7V8L8|MIAB_PROMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|33634512|emb|CAE20498.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 480 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 174/473 (36%), Positives = 274/473 (57%), Gaps = 23/473 (4%) Query: 5 IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64 + L+ + + S F+++++GCQMN DS RM + + GY + +ADL Sbjct: 9 LALVATSAIASNPATTAQHQGSFWIQTFGCQMNKADSERMAGILEAMGYHEAPAELEADL 68 Query: 65 IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124 ++ NTC IR+ A +KVYS+LGR + R + L +VVAGCVAQ EGE +LRR P + Sbjct: 69 VLYNTCTIRDNAEQKVYSYLGR----QARRKRTHPHLKLVVAGCVAQQEGEALLRRIPEL 124 Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184 ++V+GPQ RL LL + G++VV TD + E L+ R + A++ + Sbjct: 125 DLVMGPQHANRLEALLTQVDNGQQVVATDDN--HILEDLTTA----RRDSTICAWVNVIY 178 Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-- 242 GC++ CT+CVVP RG E SRS + E L G EITLLGQN++A+ G+ L G Sbjct: 179 GCNERCTYCVVPSVRGKEQSRSPEAIRLEIEGLAARGFREITLLGQNIDAY-GRDLPGIT 237 Query: 243 ----EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 + T +DLL+ + +++G+ R+R+ TSHPR ++ LI+A DL + + H+P QSG Sbjct: 238 PEGRRQNTLTDLLHHIHDVEGIERIRFATSHPRYFTERLIEACFDLPKVCEHFHIPFQSG 297 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 + +LK+M R +T YR+I++RIR + PD AIS+D IV FPGETD F+ T++L++++G Sbjct: 298 DNDVLKAMARGYTVERYRRIVNRIRELMPDAAISTDVIVAFPGETDAQFQNTLNLLEEVG 357 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + Q + YSPR TP + Q+ E VK ERL L + + N G++ +VL Sbjct: 358 FDQVNTAAYSPRPNTPAATWSNQLPEAVKVERLKQLNALVERIALQRNSRYSGKVEQVLA 417 Query: 419 EK-HGKEKGKLVGRSPWLQSVVLNSKN-----HNIGDIIKVRITDVKISTLYG 465 E + K+ +L+GR+ + ++ ++ GD++ ++I V+ +L G Sbjct: 418 EGINPKKPQQLMGRTRTNRLTFFATEGPQGCRYSPGDLVDIQINSVRAFSLSG 470 >gi|188586121|ref|YP_001917666.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Natranaerobius thermophilus JW/NM-WN-LF] gi|229890572|sp|B2A3X6|MIAB_NATTJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|179350808|gb|ACB85078.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Natranaerobius thermophilus JW/NM-WN-LF] Length = 451 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 166/449 (36%), Positives = 266/449 (59%), Gaps = 19/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F+ ++GCQMN +DS + M G+E+ S ++ADL+++NTC +REKA +KV + Sbjct: 10 KKFYTLTFGCQMNEHDSEVLAGMLDQMGFEKAASEEEADLLIINTCAVREKAEQKVLGKI 69 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142 G +R LK ++ D+ + + GC+ Q E +I R V+++ G R P+LLE Sbjct: 70 GTLRYLKENK----PDMKIAIGGCMVQQEHVANKIYRDFTHVDIIFGTHNINRFPQLLEH 125 Query: 143 A-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + GKRV + FE L + R+ + A++ I GCD +C +C+VPY RG Sbjct: 126 VMQKGKRVKEISQDDSQVFENLP-----HKREDSIKAWVVISYGCDNYCKYCIVPYVRGQ 180 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 + SR + E KL G+ EITLLGQNVN++ GK LD + +F++LL LS+I+G+ Sbjct: 181 QRSRDPEHIKYEVEKLAKEGLKEITLLGQNVNSY-GKDLD-QNISFTNLLEELSKIEGIE 238 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D LI + + + + HLPVQ+GS++ILK M R +T Y I++ Sbjct: 239 RIRFMTSHPKDFDKELITTLKESNKICEHFHLPVQAGSNKILKKMGRGYTREHYVDIVND 298 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ P+ +I++D IVG+PGE ++DF+ T+DLV + + AF+F YS R GTP + M EQ Sbjct: 299 IRAELPNASITTDIIVGYPGEEEEDFQETLDLVQNVKFDSAFTFVYSKRSGTPAAEMAEQ 358 Query: 382 VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 VDE K ++L+ +Q+++ EQ+ + V +I+ + K+ ++ L GR+ + V Sbjct: 359 VDEQTKKGRIQKLISVQQEISEQRNKDLENTVQRILVEGVSKNNED--MLSGRTRTDKLV 416 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467 IG+++ V+IT LYGE+ Sbjct: 417 HFPGDKELIGELVDVKITRGHSWNLYGEI 445 >gi|332881524|ref|ZP_08449173.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680522|gb|EGJ53470.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 441 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 165/448 (36%), Positives = 265/448 (59%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GYE ++D+AD + LNTC +R+ A +K+ + L Sbjct: 2 KKLFIETYGCQMNVADSEVVASVMRMAGYETCETLDEADAVFLNTCSVRDNAEQKIINRL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + L+ ++G L++ V GC+A+ EE++ V+VV GP Y LP+L+ + Sbjct: 62 EALHALR----RKGRHLIIGVLGCMAERVKEELIENHH-VDVVAGPDAYLSLPDLIAQVE 116 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G + ++ + SV + ++ + V G + ++ F++I GC+ FC +C+VPYTRG E Sbjct: 117 LGHKAINVELSVTETYKDVIPQRVCGSH-----ISGFVSIMRGCNNFCHYCIVPYTRGRE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E R L G E+TLLGQNVN++ +G DG+ +F +LL ++ +R Sbjct: 172 RSRDVESILNEVRDLKKRGYKEVTLLGQNVNSYLHEGADGKTVSFPELLRLVAHEADGMR 231 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS+RILK MNR++T Y + I Sbjct: 232 VRFTTSHPKDMSDDTLRVIAEEPNVCRHIHLPVQSGSNRILKLMNRKYTREWYLDRVAAI 291 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD +S+D G+ ET++D + ++ L+ + Y AF FKYS R GT S L + Sbjct: 292 RRIVPDCGLSTDIFSGYCSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 V E+VK RL L E N C G++ EVL+E K K +L GR+ + VV Sbjct: 352 VSEDVKVRRLNELIALQNELSAESNRRCEGRVYEVLVEGVSKRSKEQLFGRTEQNKVVVF 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + +++GD +KVR+ +TL GE+V Sbjct: 412 DRGKYHVGDFVKVRVNGSSSATLKGEVV 439 >gi|315444879|ref|YP_004077758.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium sp. Spyr1] gi|315263182|gb|ADT99923.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium sp. Spyr1] Length = 516 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 163/416 (39%), Positives = 250/416 (60%), Gaps = 18/416 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ F V++YGCQMNV+DS R+ + GY+R + DAD++V NTC +RE A K+Y Sbjct: 23 APRTFEVRTYGCQMNVHDSERLSGLLEQAGYQRAGAGVDADIVVFNTCAVRENADNKLYG 82 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L + K + + + + V GC+AQ + + +LR++P V+VV G LP LL+R Sbjct: 83 NLSHLAPRKQADPQ----MQIAVGGCLAQKDRDAVLRKAPWVDVVFGTHNIGSLPTLLDR 138 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 AR RV + + E E S + +R+ A+++I GC+ CTFC+VP RG E Sbjct: 139 ARH-NRVAQVEIA-ESLREFPSALPA--SRESAYAAWVSISVGCNNTCTFCIVPSLRGKE 194 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSDLLYSLSEIK 258 + R V+ E + L+D GV EITLLGQNVNA+ D ++ F+ LL + I Sbjct: 195 VDRRPGDVLAEVQALVDQGVLEITLLGQNVNAYGVSFADPTEARDRGAFAKLLRACGRID 254 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R+T+ HP + +D +I+A + P LH+P+QSGSDRIL++M R + A Y I Sbjct: 255 GLERVRFTSPHPAEFTDDVIEAMAQTSNVCPTLHMPLQSGSDRILRAMRRSYRADRYLGI 314 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 IDR+R+ P AI++D IVGFPGET++DF+AT+D+V+ ++ AF+F+YS R GTP + + Sbjct: 315 IDRVRTAIPHAAITTDLIVGFPGETEEDFQATLDVVEAARFSSAFTFQYSKRPGTPAAEL 374 Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 Q+ + V +E RL+ LQ+++ ++ N A +G+ +E+L+ K R Sbjct: 375 EGQIPKAVVSERYQRLIELQERISWEE---NRAQIGREVELLVATGEGRKDAATAR 427 >gi|326384493|ref|ZP_08206173.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gordonia neofelifaecis NRRL B-59395] gi|326196838|gb|EGD54032.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gordonia neofelifaecis NRRL B-59395] Length = 521 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 160/417 (38%), Positives = 242/417 (58%), Gaps = 22/417 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + GY DDADL+V NTC +RE A K+Y L Sbjct: 21 YSVRTFGCQMNVHDSERIAGLLEDAGYVAAVDGDDADLVVFNTCAVRENADNKLYGNLSH 80 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + +K R + + V GC+AQ + + + +R+P V+VV G LP LLERAR Sbjct: 81 LAPVKADRPG----MQIAVGGCLAQKDKDTVRKRAPWVDVVFGTHNIGSLPVLLERARHN 136 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + D ER R + ++++ GC+ CTFC+VP RG E+ R Sbjct: 137 D---EAQVEILDSLERFPSTLPA-RRDSAYSGWVSVSVGCNNTCTFCIVPSLRGKEVDRR 192 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLVR 262 V+ E + L+D GV E+TLLGQNVNA+ D E + F+DLL + I+GL R Sbjct: 193 PGDVLAEVQALVDQGVLEVTLLGQNVNAYGQSFADPETPRNRGAFADLLRACGTIEGLER 252 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP + +D +I A + + P LH+P+QSGSDR+L++M R + ++ I+DR+ Sbjct: 253 VRFTSPHPAEFTDDVIAAMAETPNICPQLHMPLQSGSDRVLRAMRRSYRRTKFLGILDRV 312 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P AI++D IVGFPGET++DF T+D+V+K ++ AF+F+YSPR GTP + M +QV Sbjct: 313 REAMPHAAITTDIIVGFPGETEEDFAETLDVVEKARFSSAFTFQYSPRPGTPAATMPDQV 372 Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI----EKHGKEKGKLVGRS 432 V E RL+ LQ+++ + N A VG E+L+ + G++ GR+ Sbjct: 373 PPEVVTERYQRLIALQERI---CLEGNTALVGTEAELLVVADEGRKSSSTGRMTGRA 426 >gi|68536191|ref|YP_250896.1| hypothetical protein jk1114 [Corynebacterium jeikeium K411] gi|123775708|sp|Q4JV79|MIAB_CORJK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|68263790|emb|CAI37278.1| miaB [Corynebacterium jeikeium K411] Length = 512 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 159/443 (35%), Positives = 263/443 (59%), Gaps = 22/443 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + GY + D++V NTC +RE A +++Y LG+ Sbjct: 19 YEVRTFGCQMNVHDSERLSGLLEDSGYVPASEGVTPDVVVFNTCAVRENADKRLYGTLGQ 78 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 ++ +K+ E + + V GC+AQ + + ++ ++P V+VV G LP LLER+ Sbjct: 79 MKAIKD----EHPGMQIAVGGCMAQKDKQTVVDKAPWVDVVFGTHNLGSLPTLLERSAHN 134 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + + D E V R+ ++++ GC+ CTFC+VP RG E R Sbjct: 135 HKA---EVEIFDALEEFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRR 190 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +++ E + L++ GV E+TLLGQNVNA+ + L+ ++ FS LL + EI+GL R Sbjct: 191 PGEILAEVKALVEQGVSEVTLLGQNVNAYGVNFADETLERDRTAFSKLLRACGEIEGLER 250 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+T+ HP + +D +I A + + P LH+P+QSGSD++LK M R + + ++ I+D++ Sbjct: 251 LRFTSPHPAEFTDDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMKRSYRSKKFLAILDKV 310 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P AI++D IVGFPGET++DF+AT+D+V+K ++ AF+F+YSPR GTP + M QV Sbjct: 311 RERIPHAAITTDIIVGFPGETEEDFQATLDVVEKARFSSAFTFQYSPRPGTPAAEMENQV 370 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 + V + ERLL LQ+++ E++ N +G E+L++ G++ + RS + Sbjct: 371 PKAVVQDRYERLLALQERISEEE---NRKLIGTTQELLVQADGRKNDRTQRRSGRSRDGR 427 Query: 440 L----NSKNHNIGDIIKVRITDV 458 L + GD+++V ITD Sbjct: 428 LVHFTPEGDVRAGDVVEVVITDA 450 >gi|303246488|ref|ZP_07332767.1| RNA modification enzyme, MiaB family [Desulfovibrio fructosovorans JJ] gi|302492198|gb|EFL52073.1| RNA modification enzyme, MiaB family [Desulfovibrio fructosovorans JJ] Length = 446 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 180/451 (39%), Positives = 252/451 (55%), Gaps = 22/451 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F + + GCQMNV D + G+ ++A+L +L TC +REK +KV S LG Sbjct: 2 KFHITTMGCQMNVGDGDWLTRSLIGLGFTPAPE-EEAELFILFTCSVREKPEQKVASELG 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143 RI + R ++ + V V GCVAQ G + RR P+V +V G P+ L R A Sbjct: 61 RIAD----RHRDNPNAFVAVGGCVAQQFGTALWRRFPMVRLVFGSDGIAGAPQALSRLAA 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G R+ D++ E ER R AF++I +GCD FC +C+VP+ RG + Sbjct: 117 EPGLRLSLLDFT-ETYPERDQSWPEDTVPPR---AFVSIMQGCDNFCAYCIVPFVRGRQK 172 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLV 261 SR L VV E L G EITLLGQNVN++ GLD G+ +F+ LL +++ I G+ Sbjct: 173 SRGLPAVVAECEALAGRGAREITLLGQNVNSY---GLDASGDGTSFARLLDAVATIPGIA 229 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP+D+SD ++ DL L P LHLPVQSGSD +L M RR+ Y +++D+ Sbjct: 230 RIRFTTSHPKDLSDDVVARFADLPELCPALHLPVQSGSDAVLTRMGRRYDRAAYLRLVDK 289 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RP IA+++D IVGFPGETDDDFR T+DLV ++G+ FSF Y R GT M + Sbjct: 290 LRRARPGIALTTDLIVGFPGETDDDFRRTLDLVREVGFDSGFSFMYCDRPGTVSERMEPK 349 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPW--L 435 V + VK+ RL LQ L E+ + A VG+ E+LIE + GR P + Sbjct: 350 VAQEVKSARLAELQALLDERLAAALAAQVGRTTEILIEGASRRDSPTGPSWRGRDPGGRI 409 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 ++ L G I++ RI K +L GE Sbjct: 410 VNMALPGVAEAAGTIVRARIRQAKKHSLIGE 440 >gi|260061724|ref|YP_003194804.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Robiginitalea biformata HTCC2501] gi|88785856|gb|EAR17025.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Robiginitalea biformata HTCC2501] Length = 481 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 180/456 (39%), Positives = 255/456 (55%), Gaps = 22/456 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + +G+ + +++ADLI++NTC IREKA + V L Sbjct: 24 RKLYIESYGCQMNFSDSEIVASILGQEGFNTTSRLEEADLILVNTCSIREKAEQTVRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 LK K + V V GC+A+ + L IV++VVGP Y LP L+ Sbjct: 84 VHFNGLK----KSNPGVKVGVLGCMAERLKSQFLEEEKIVDMVVGPDAYKDLPNLVREVD 139 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V+ S E+ + +S V G N GVTAF++I GCD CTFCVVP+TRG E S Sbjct: 140 SGQNAVNVILSKEETYADVSPVRLGSN---GVTAFVSITRGCDNMCTFCVVPFTRGRERS 196 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251 R ++ E L NG E+TLLGQNV++ W G GL D +K + F+ LL Sbjct: 197 RDPQSILREVGDLWANGYKEVTLLGQNVDSYLWYGGGLKKDFDKASPMQQATAVNFAGLL 256 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 + +R R++TS+P+DM+ +I+ D + Y+HLPVQSGSDRILK+MNR HT Sbjct: 257 EMAATAYPGMRFRFSTSNPQDMTLDVIETMARFDNICNYIHLPVQSGSDRILKAMNRLHT 316 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY +ID IR + PD IS D I GFP ET++D + T+ L+D + Y F F YS R Sbjct: 317 REEYFGLIDNIRRLIPDCGISQDMIAGFPTETEEDHQQTLSLMDYVKYDFGFMFAYSERP 376 Query: 372 GT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLV 429 GT M + V + VK RL + K + + N A +G++ EVLIE K + Sbjct: 377 GTLAARKMADDVPDAVKKRRLREIIDKQQAHSLERNQAHIGRVEEVLIEGPSRKSDAHWM 436 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 GR+ VV +N+ +G+ + VRI D +TL G Sbjct: 437 GRNTQNTVVVFPKENYRVGEFVNVRIEDCTSATLLG 472 >gi|145224548|ref|YP_001135226.1| RNA modification protein [Mycobacterium gilvum PYR-GCK] gi|229890565|sp|A4TCM9|MIAB_MYCGI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|145217034|gb|ABP46438.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium gilvum PYR-GCK] Length = 512 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 161/403 (39%), Positives = 248/403 (61%), Gaps = 18/403 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ F V++YGCQMNV+DS R+ + GY+R + DAD++V NTC +RE A K+Y Sbjct: 19 APRTFEVRTYGCQMNVHDSERLSGLLEQAGYQRAGAGVDADIVVFNTCAVRENADNKLYG 78 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L + K + + + + V GC+AQ + + +LR++P V+VV G LP LL+R Sbjct: 79 NLSHLAPRKQADPQ----MQIAVGGCLAQKDRDAVLRKAPWVDVVFGTHNIGSLPTLLDR 134 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 AR RV + + E E S + +R+ A+++I GC+ CTFC+VP RG E Sbjct: 135 ARH-NRVAQVEIA-ESLREFPSALPA--SRESAYAAWVSISVGCNNTCTFCIVPSLRGKE 190 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----EKCTFSDLLYSLSEIK 258 + R V+ E + L+D GV EITLLGQNVNA+ D ++ F+ LL + I Sbjct: 191 VDRRPGDVLAEVQALVDQGVLEITLLGQNVNAYGVSFADPTEARDRGAFAKLLRACGRID 250 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R+T+ HP + +D +I+A + P LH+P+QSGSDRIL++M R + A Y I Sbjct: 251 GLERVRFTSPHPAEFTDDVIEAMAQTSNVCPTLHMPLQSGSDRILRAMRRSYRADRYLGI 310 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 IDR+R+ P AI++D IVGFPGET++DF+AT+D+V+ ++ AF+F+YS R GTP + + Sbjct: 311 IDRVRTAIPHAAITTDLIVGFPGETEEDFQATLDVVEAARFSSAFTFQYSKRPGTPAAEL 370 Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI 418 Q+ + V +E RL+ LQ+++ ++ N A +G+ +E+L+ Sbjct: 371 EGQIPKAVVSERYQRLIELQERISWEE---NRAQIGREVELLV 410 >gi|330997206|ref|ZP_08321059.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paraprevotella xylaniphila YIT 11841] gi|329571001|gb|EGG52708.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paraprevotella xylaniphila YIT 11841] Length = 441 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 167/448 (37%), Positives = 263/448 (58%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GYE ++D+AD + LNTC +R+ A +K+ + L Sbjct: 2 KKLFIETYGCQMNVADSEVVASVMRMAGYETCETLDEADAVFLNTCSVRDNAEQKIINRL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + L+ ++G L++ V GC+A+ EE++ V++V GP Y LP+L+ + Sbjct: 62 EALHALR----RKGRHLVIGVLGCMAERVKEELIENHH-VDLVAGPDAYLSLPDLIAQVE 116 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G + ++ + SV + + + V G + ++ F++I GC+ FC +C+VPYTRG E Sbjct: 117 LGHKAINVELSVTETYRDVIPQRVCGSH-----ISGFVSIMRGCNNFCHYCIVPYTRGRE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E R L G E+TLLGQNVN++ G DG+ +F LL ++ +R Sbjct: 172 RSRDVESILNEVRDLKKRGYKEVTLLGQNVNSYLHVGGDGKTVSFPQLLRLVAHEADGMR 231 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGSDRILK MNR++T Y + I Sbjct: 232 VRFTTSHPKDMSDDTLRVIAEEPNVCRHIHLPVQSGSDRILKLMNRKYTREWYLDRVAAI 291 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD +S+D G+ ET++D + ++ L+ + Y AF FKYS R GT S L + Sbjct: 292 RRIVPDCGLSTDIFSGYCSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 V E+VK RL L E N C G++ EVL+E K K +L GR+ + VV Sbjct: 352 VPEDVKVRRLNELIALQNELSAESNRHCEGRVYEVLVEGVSKRSKEQLFGRTEQNKVVVF 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + H++GD +KVRI+ +TL GE+V Sbjct: 412 DRGKHHVGDFVKVRISGSSSATLKGEVV 439 >gi|73662777|ref|YP_301558.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123775346|sp|Q49X85|MIAB_STAS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|72495292|dbj|BAE18613.1| putative 2-methylthioadenine synthetase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 513 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 171/448 (38%), Positives = 265/448 (59%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F +K+YGCQMN +D+ M + + GY ++ AD+I++NTC IRE A KV+S + Sbjct: 67 KTFLIKTYGCQMNAHDTEVMAGILGALGYTPTEDINHADVILINTCAIRENAENKVFSEI 126 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK KE + ++ V GC++Q E +IL+ V+++ G +RLPE+LE Sbjct: 127 GNLKHLK----KEKPETVIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEE 182 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG Sbjct: 183 AYLSKAMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGK 237 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++DE R L G EITLLGQNVNA+ GK +DG DLL +S+I + Sbjct: 238 ERSRRPEDIIDEVRDLARQGYKEITLLGQNVNAY-GKDIDGLAYGLGDLLEDISKID-IP 295 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP D +D +I+ + ++P++HLPVQSG++ +LK M R++T Y +++R Sbjct: 296 RVRFTTSHPWDFTDRMIEVIANGGNIVPHVHLPVQSGNNAVLKIMGRKYTRESYLDLVNR 355 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ P++A+++D IVG+P ETD+ F T+ L D++ + A+++ YS R GTP + M + Sbjct: 356 IKTHIPNVALTTDIIVGYPNETDEQFEETLTLYDEVEFEHAYTYIYSQRDGTPAAKMNDN 415 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V +VK +RL L KK+ GQ ++VL E K+ L G + + V Sbjct: 416 VPLDVKKDRLQQLNKKVACYSERAMQQYEGQTVQVLCEGVSKKDDTVLSGYTSKNKLVNF 475 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG I+ V I + K +L G + Sbjct: 476 KAPKSMIGKIVNVYIDEAKQFSLNGTFI 503 >gi|253577928|ref|ZP_04855200.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850246|gb|EES78204.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 485 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 169/450 (37%), Positives = 270/450 (60%), Gaps = 24/450 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF+++ GCQMN + + + GY V+ +DAD+++ NTC +RE A K+Y LG Sbjct: 51 FFIQNAGCQMNSLQTDTVAGIVKRMGYTEVSREEDADVVIYNTCTVRENANLKIYGHLGH 110 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++++K K+ +L +++ GC+ Q E+I + V++V G +++ PEL R+ Sbjct: 111 LKSIK----KKNPELKIILFGCMMQEPEVIEKIHKEYSFVDLVFGTHNFHKFPELFYRS- 165 Query: 145 FGKRVVDTDYSVEDKF-ERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 ++T+ + D + E IV+G +RK + I GC+ FC++C+VPY RG E Sbjct: 166 -----LNTEGQIIDVWKESDEIVEGMPSDRKYSFKTGVNIMFGCNNFCSYCIVPYVRGRE 220 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR +++E + L+ +GV E+ LLGQNVN++ GK L+ TF+ LL + I+GL R Sbjct: 221 KSREPEAIIEEIKGLVADGVTEVMLLGQNVNSY-GKTLE-HPVTFAQLLKQVEAIEGLKR 278 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHP+D+SD LI+ + + +LHLP+QSGS RILK MNRR+ +Y +++ +I Sbjct: 279 IRFMTSHPKDLSDELIRTMAESKKVCHHLHLPMQSGSSRILKIMNRRYDKEKYLELVAKI 338 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ PDI++++D IVGFPGET++DF+ T+D+V+K + AF+F YS R GTP + M QV Sbjct: 339 RNAVPDISLTTDIIVGFPGETEEDFQDTLDVVEKCDFDSAFTFIYSKRSGTPAAKMENQV 398 Query: 383 DENV---KAERLLCL-QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 E+V + +RLL L Q+K R+ F G + E+L+E+ +EKG GR+ + V Sbjct: 399 PEDVVKDRFDRLLALVQEKGRKASSRFE----GTVQEILVEEESREKGIFTGRTEYNLLV 454 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG +KV++ K +G L Sbjct: 455 HFPGCQDLIGKYVKVKLDTCKGFYYFGSLA 484 >gi|240171189|ref|ZP_04749848.1| hypothetical protein MkanA1_17891 [Mycobacterium kansasii ATCC 12478] Length = 532 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 169/447 (37%), Positives = 263/447 (58%), Gaps = 29/447 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEKVYSF 83 + V++YGCQMNV+DS R+ + + GY R + DAD++V NTC +RE A K+Y Sbjct: 26 YQVRTYGCQMNVHDSERLAGLLEAAGYRRAADGSDFGDADVVVFNTCAVRENADNKLYGN 85 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L + R + D+ + V GC+AQ + + +LRR+P V+VV G LP LL+RA Sbjct: 86 LSHL----APRKRTNPDMQIAVGGCLAQKDRDVVLRRAPWVDVVFGTHNIGSLPTLLDRA 141 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K V+ +++ L R+ A+++I GC+ CTFC+VP RG E Sbjct: 142 RHNKVAQVEIAEALQQFPSSLPSA-----RESAYAAWVSISVGCNNSCTFCIVPSLRGKE 196 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIK 258 I RS + V+ E + L+D GV EITLLGQNVNA+ L + F++LL + I Sbjct: 197 IDRSPADVLAEVQSLVDTGVLEITLLGQNVNAYGVSFADPALPRNRGAFAELLRACGRIP 256 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R+T+ HP + +D +I+A + P LH+P+QSGSD +L++M R + A Y I Sbjct: 257 GLERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDPVLRAMRRSYRADRYLGI 316 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I+R+R+ P AI++D IVGFPGET++DF AT+D+V + +A AF+F+YS R GTP ++ Sbjct: 317 IERVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRQARFAAAFTFQYSKRPGTPAADF 376 Query: 379 LEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGR 431 EQ+ +++ + ERL+ LQ+++ + N VGQ +EVL+ + ++ GR Sbjct: 377 DEQLPKDIVRQRYERLIELQEQI---SLEGNRELVGQSVEVLVATGEGRKDSRTSRMSGR 433 Query: 432 SPWLQSVVLNSKNHNI--GDIIKVRIT 456 + + V + + ++ GD+I +IT Sbjct: 434 ARDGRLVHFRAGDQHVRPGDLITTQIT 460 >gi|123969036|ref|YP_001009894.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. AS9601] gi|229890604|sp|A2BSM6|MIAB_PROMS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|123199146|gb|ABM70787.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. AS9601] Length = 464 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 174/455 (38%), Positives = 265/455 (58%), Gaps = 23/455 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM GY R ++ +ADL++ NTC IR+ A +KVYSFLGR Sbjct: 21 YWITTFGCQMNKADSERMAGTLEKMGYTRADNELNADLVLYNTCTIRDNAEQKVYSFLGR 80 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + L +VVAGC+AQ EGE +LRR P +++V+GPQ L LL + G Sbjct: 81 ----QAKRKHKTPSLKLVVAGCLAQQEGESLLRRVPELDLVMGPQHVNNLENLLGKVDLG 136 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +V T E+ F I R+ + ++ I GC++ C++CVVP RG E SR Sbjct: 137 NQVAAT----EENFISEDITSA--RRESSICGWVNIIYGCNERCSYCVVPSVRGKEQSRY 190 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260 + + E +KL + EITLLGQN++A+ G+ L G ++ T +DLLY + ++KG+ Sbjct: 191 PNAIKSEIQKLAGDNFKEITLLGQNIDAY-GRDLPGTTKEGRKENTLTDLLYYIHDVKGI 249 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHPR S LI+A +LD + + H+P QSG+D ILK M+R +T +Y+ II+ Sbjct: 250 RRIRFATSHPRYFSKRLIQACYELDKVCEHFHIPFQSGNDEILKQMSRGYTIKKYKNIIE 309 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IRS+ PD +I++D IV FPGET+ ++ T+ L+ +IG+ Q + YSPR TP + Sbjct: 310 NIRSLMPDASITADAIVAFPGETEKQYQDTLKLITEIGFDQVNTAAYSPRPNTPAAVWSN 369 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439 Q+ E VK RL + + + S N + I VLIE + K +++GR+ + Sbjct: 370 QLSEEVKKARLQEINDLVEKTARSRNKRYINNIESVLIEGLNPKNSSQIMGRTRTNRLTF 429 Query: 440 LNSK-----NHNIGDIIKVRITDVKISTLYGELVV 469 + N ++GD I VRI + + +L GEL + Sbjct: 430 VEIPKNIDFNFSLGDEIDVRINETRPFSLTGELYL 464 >gi|237716928|ref|ZP_04547409.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405697|ref|ZP_06082247.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22] gi|294810637|ref|ZP_06769287.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides xylanisolvens SD CC 1b] gi|229442911|gb|EEO48702.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356572|gb|EEZ05662.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22] gi|294442179|gb|EFG10996.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides xylanisolvens SD CC 1b] Length = 457 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 166/449 (36%), Positives = 263/449 (58%), Gaps = 20/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD + +NTC IR+ A +K+ + L Sbjct: 20 KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK K+ L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 80 EFFHSLK----KKKKRLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 189 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + GE TF LL +++E VR Sbjct: 190 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVR 249 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++T Y + I Sbjct: 250 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 309 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 + + PD +++D GF ET+ D ++ L++ GY AF FKYS R GT S LE Sbjct: 310 KRIIPDCGLTTDIFSGFHSETEKDHAMSLSLMEACGYDAAFMFKYSERPGTYASKHLEDN 369 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N C+G+ EVL+E K + +L GR+ + Sbjct: 370 VPEEVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 426 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466 VV + H +GD + VR+T+ +TL GE Sbjct: 427 VVFDRGTHRVGDFVNVRVTEASSATLKGE 455 >gi|313903997|ref|ZP_07837377.1| RNA modification enzyme, MiaB family [Eubacterium cellulosolvens 6] gi|313471146|gb|EFR66468.1| RNA modification enzyme, MiaB family [Eubacterium cellulosolvens 6] Length = 487 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 176/439 (40%), Positives = 266/439 (60%), Gaps = 26/439 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F V ++GCQMN DS ++ + GY V++ ++ADL++ NTC +RE A KVY LG Sbjct: 52 FHVATFGCQMNARDSEKLRGILEEIGYVPVDT-EEADLVLYNTCTVRENANTKVYGRLGG 110 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA- 143 + + K K+ +++ + GC+ Q E + I + VN++ G Y+L EL+ RA Sbjct: 111 LHSWK----KKNPHMMIGLCGCMMQEEHVVKTIREKYRFVNLIFGTHNIYKLAELMSRAL 166 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VVD + E+L VD Y K GV I GC+ FC++C+VPY RG E Sbjct: 167 DHPDEMVVDIQQKTDLMVEQLP-VDRTYKFKSGVN----IMYGCNNFCSYCIVPYVRGRE 221 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR ++ E +L+ +GV E+ LLGQNVN++ GK L+ +F++LL S+++I GL R Sbjct: 222 KSREPLDILREIEQLVADGVIEVMLLGQNVNSY-GKTLEN-PVSFAELLESVAQIDGLRR 279 Query: 263 LRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R+ TSHP+D+SD LI D + P+LHLP+QSGS R+LK MNRR+T Y +++D+ Sbjct: 280 VRFMTSHPKDLSDELIAVMAKYPDKICPHLHLPLQSGSSRLLKHMNRRYTKESYLELVDK 339 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ PDI++++D IVG+PGET++DF+ T+++V+K+ Y AF+F YS R GTP + M +Q Sbjct: 340 IRAAMPDISLTTDIIVGYPGETEEDFQETLEVVEKVRYDSAFTFIYSKRSGTPAAKMDDQ 399 Query: 382 VDENVKAER----LLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQ 436 V E+V +R LL +Q REQ F GQ+ EVL+E + ++ G + GR Sbjct: 400 VPEDVVKDRFNRLLLLVQNIGREQTARFE----GQVKEVLVEHINEQDPGLVTGRMDNNS 455 Query: 437 SVVLNSKNHNIGDIIKVRI 455 V IG I+KV++ Sbjct: 456 VVHFPGDASLIGQIVKVKL 474 >gi|284050979|ref|ZP_06381189.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arthrospira platensis str. Paraca] Length = 452 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 174/455 (38%), Positives = 272/455 (59%), Gaps = 23/455 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ + + ++GCQMN DS RM + G V + AD+++ NTC IR+ A +KVYS+ Sbjct: 5 PRHYHITTFGCQMNKADSERMAGILDEMGLTFVEDPNQADIVLYNTCTIRDNAEQKVYSY 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + R +E +L ++VAGCVAQ EGE +LRR P +++V+GPQ RL +LLE+ Sbjct: 65 LGR----QAKRKQENPNLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQV 120 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G +VV T E ++IV+ +R +TA++ + GC++ CT+CVVP RG Sbjct: 121 FEGSQVVAT--------EPINIVEDITKPRRDSNITAWVNVIYGCNERCTYCVVPNVRGT 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLS 255 E SR+ + E +L G E+TLLGQN++A+ G+ L G + T +DLLY + Sbjct: 173 EQSRTPEAIRAEMEELARAGYKEVTLLGQNIDAY-GRDLPGSTPDGRHQHTLTDLLYYVH 231 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 +I G+ R+R+ TSHPR ++ LI+A +L + + H+P QSG + +LK+M R +T +Y Sbjct: 232 DIPGIERIRFATSHPRYFTERLIRACAELPKVCEHFHIPFQSGDNDVLKAMARGYTHEKY 291 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 R+II+ IR PD +IS+D IVGFPGET+ F T+ LVD IG+ + YSPR GT Sbjct: 292 RRIINTIREYIPDASISADAIVGFPGETEAQFENTLKLVDDIGFDLLNTAAYSPRPGTGA 351 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPW 434 + Q+ E VKA+RL L + + + + + +I EVL+E + K+ +++GR+ Sbjct: 352 ALWENQLSEEVKADRLQRLNRLVNVKAMERSQRYRDRIEEVLVEGTNPKDPSQVMGRTRG 411 Query: 435 LQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468 + + G+++KV+I +V+ +L GE + Sbjct: 412 NRLTFFKGNLAELSGELVKVKIIEVRAFSLTGEPI 446 >gi|310641636|ref|YP_003946394.1| tRNA-i(6)a37 thiotransferase enzyme miab [Paenibacillus polymyxa SC2] gi|309246586|gb|ADO56153.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus polymyxa SC2] Length = 517 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 174/447 (38%), Positives = 267/447 (59%), Gaps = 14/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + V ++GCQMN +DS ++ + GY+ +AD+I+LNTC IRE A +KV+ L Sbjct: 74 KHYIVYTFGCQMNEHDSETIKGLLEQMGYQATEDRKEADIILLNTCAIRENAEDKVFGEL 133 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK E LL+ V GC++Q E I+++ V+++ G +RLP+L++ Sbjct: 134 GHLKHLKT----EKPGLLLGVCGCMSQEENVVNRIMQKHGFVDMIFGTHNIHRLPQLVKE 189 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A F K +V +S E I++ ++ G+ A++ I GCDKFCT+C+VP+TRG E Sbjct: 190 ALFSKEMVVEVWSKEG-----DIIENLPKKREGMRAWVNIMYGCDKFCTYCIVPFTRGKE 244 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR V+ E R L G EITLLGQNVNA+ GK L F DL+ + +I + R Sbjct: 245 RSRRPEDVIAEVRDLARQGFKEITLLGQNVNAY-GKDLKDMNYRFGDLMDDMRKI-NIPR 302 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHPRD D L++ G L+ ++HLPVQSG+ ILK MNR++T ++ +I Sbjct: 303 VRFTTSHPRDFDDHLVEVLGKGGNLVEHIHLPVQSGNTDILKKMNRKYTRERVLELAAKI 362 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++ P +++++D IVGFPGETD+ F T+ LV ++GY A++F YSPR GTP ++M + V Sbjct: 363 KAAVPHVSLTTDIIVGFPGETDEQFEDTLSLVREVGYDFAYTFIYSPREGTPAASMEDNV 422 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441 +VK ERL L + + + FN G+++EVL+E K K L GR+ + V Sbjct: 423 PMSVKKERLRRLNIAVNQNSLRFNSRLRGEVVEVLVEGESKNDSKVLAGRTRSNKLVHFE 482 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++V+IT+ + G+LV Sbjct: 483 GSKDLIGSFVQVKITEPMTFYIKGDLV 509 >gi|170781615|ref|YP_001709947.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clavibacter michiganensis subsp. sepedonicus] gi|229890481|sp|B0RGZ1|MIAB_CLAMS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|169156183|emb|CAQ01325.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length = 530 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 171/446 (38%), Positives = 265/446 (59%), Gaps = 29/446 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ + V++YGCQMNV+DS R+ + GY + AD++V+NTC +RE A K+Y Sbjct: 18 PRTYEVRTYGCQMNVHDSERLTGSLEAAGYVSAEGAE-ADIVVINTCAVRENADNKLYGN 76 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K R EG + + V GC+AQ + +L ++P V+VV G LP LLERA Sbjct: 77 LGHLAGVK--RRHEG--MQIAVGGCLAQKDRATVLEKAPWVDVVFGTHNMGALPTLLERA 132 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ ++ S+E L R + +++I GC+ CTFC+VP RG E Sbjct: 133 RHNGEAQLEILESLETFPSTLPT-----KRDEIASGWVSISVGCNNTCTFCIVPALRGKE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R ++ E + L+D+G E+TLLGQNVN++ G++ G++ F LL + I+GL Sbjct: 188 KDRRPGDILAEIQALVDDGAVEVTLLGQNVNSY---GVEFGDRQAFGKLLRAAGAIEGLE 244 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I A + +MP LH+P+QSGSDRILK+M R + + + I+DR Sbjct: 245 RIRFTSPHPAAFTDDVIDAMAETPAVMPQLHMPLQSGSDRILKAMRRSYRSERFLGILDR 304 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ PD AI++D IVGFPGET++DF+ T+ +V+ ++ AF+F+YS R GTP + M EQ Sbjct: 305 VRTRVPDAAITTDIIVGFPGETEEDFQETLRVVEAARFSSAFTFQYSIRPGTPAATMEEQ 364 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKG---KLVGRSPW 434 V +V E RL LQ+++ ++ N VG+ +EVL+ H G++ G ++ GR+ Sbjct: 365 VPADVVKERYGRLTALQERISHEE---NQRVVGRTVEVLVSAHEGRKDGDTRRVTGRAQD 421 Query: 435 LQSVVLN----SKNHNIGDIIKVRIT 456 + V L+ S GD + V +T Sbjct: 422 GRLVHLDVPEGSAEPRPGDAVDVEVT 447 >gi|148273204|ref|YP_001222765.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|229890480|sp|A5CSL5|MIAB_CLAM3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|147831134|emb|CAN02086.1| putative methylthioadenine synthetase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 528 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 171/446 (38%), Positives = 266/446 (59%), Gaps = 29/446 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ + V++YGCQMNV+DS R+ + GY + AD++V+NTC +RE A K+Y Sbjct: 18 PRTYEVRTYGCQMNVHDSERLTGSLEAAGYVSAEGAE-ADIVVINTCAVRENADNKLYGN 76 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K R EG + + V GC+AQ + +L ++P V+VV G LP LLERA Sbjct: 77 LGHLAGVK--RRHEG--MQIAVGGCLAQKDRATVLEKAPWVDVVFGTHNMGALPTLLERA 132 Query: 144 RF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+ ++ S+E L R + +++I GC+ CTFC+VP RG E Sbjct: 133 RHNGEAQLEILESLETFPSTLPT-----KRDEIASGWVSISVGCNNTCTFCIVPALRGKE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R ++ E + L+D+G E+TLLGQNVN++ G++ G++ F LL + I+GL Sbjct: 188 KDRRPGDILAEIQALVDDGAVEVTLLGQNVNSY---GVEFGDRQAFGKLLRAAGAIEGLE 244 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I A + +MP LH+P+QSGSDR+LK+M R + + + I+DR Sbjct: 245 RIRFTSPHPAAFTDDVIDAMAETPAVMPQLHMPLQSGSDRVLKAMRRSYRSERFLGILDR 304 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ PD AI++D IVGFPGET++DF+ T+ +V+ ++ AF+F+YS R GTP + M EQ Sbjct: 305 VRTRIPDAAITTDIIVGFPGETEEDFQETLRVVEAARFSSAFTFQYSIRPGTPAATMEEQ 364 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKG---KLVGRSPW 434 V +V E RL LQ+++ ++ N VG+ +EVL+ H G++ G ++ GR+ Sbjct: 365 VPADVVKERYGRLTALQERISHEE---NQRVVGRTVEVLVSAHEGRKDGDTRRVTGRAQD 421 Query: 435 LQSVVLN----SKNHNIGDIIKVRIT 456 + V L+ S GD ++V IT Sbjct: 422 GRLVHLDVPAGSGEPRPGDAVEVEIT 447 >gi|84496889|ref|ZP_00995743.1| hypothetical protein JNB_05180 [Janibacter sp. HTCC2649] gi|84383657|gb|EAP99538.1| hypothetical protein JNB_05180 [Janibacter sp. HTCC2649] Length = 505 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 159/399 (39%), Positives = 242/399 (60%), Gaps = 18/399 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM------DDADLIVLNTCHIREKAAEKV 80 + V+++GCQMNV+DS R+ + + GY V SM + AD++V NTC +RE A K+ Sbjct: 7 YDVRTHGCQMNVHDSERLAGLLETAGYVDVASMAGDQQPEAADVVVFNTCAVRENADNKL 66 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 Y LG++R K + D+ + V GC+AQ + E I++R+P V+VV G LP LL Sbjct: 67 YGNLGQLREAK----RHNPDMQIAVGGCMAQKDRETIVQRAPWVDVVFGTHNIGSLPALL 122 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 +RAR KR + + + ER R A+++I GC+ CTFC+VP RG Sbjct: 123 DRARHNKRA---EVEILESLERFPSTLP-TRRDSAYAAWVSISVGCNNTCTFCIVPSLRG 178 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259 E R +++ E + L+D GV E+TLLGQNVN + G++ G++ F LL + I+G Sbjct: 179 KEADRRPGEILAEIQALVDQGVVEVTLLGQNVNTY---GVEFGDRFAFGKLLRACGAIEG 235 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+T+ HP +D +I A + +MP LH+P+QSGSD++LK M R + + ++ II Sbjct: 236 LERVRFTSPHPAAFTDDVIAAMAETPNVMPTLHMPLQSGSDKVLKDMRRSYRSEKFLGII 295 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 DR+R P+ AI++D IVGFPGET++DF T+ +V++ ++ AF+F+YS R GTP + M Sbjct: 296 DRVREQIPNAAITTDIIVGFPGETEEDFAETLRVVEQSRFSSAFTFQYSIRPGTPAATMA 355 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 +Q+ ++V ER L L K E + N A G +EVL+ Sbjct: 356 DQIPKDVVQERFLRLVKLQDEISWAENRALEGHTVEVLV 394 >gi|254821762|ref|ZP_05226763.1| hypothetical protein MintA_17652 [Mycobacterium intracellulare ATCC 13950] Length = 394 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 159/401 (39%), Positives = 245/401 (61%), Gaps = 21/401 (5%) Query: 23 VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P R + V++YGCQMNV+DS R+ + + GY+R DAD++V NTC +RE A K+Y Sbjct: 6 APARTYQVRTYGCQMNVHDSERLAGLLEAAGYQRAAEDADADVVVFNTCAVRENADNKLY 65 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L + R ++ ++ + V GC+AQ + + +LR++P V+VV G LP LLE Sbjct: 66 GNLSHL----APRKRDDPEMQIAVGGCLAQKDRDALLRKAPWVDVVFGTHNIGSLPTLLE 121 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 RAR K V+ ++++ L R+ A+++I GC+ CTFC+VP RG Sbjct: 122 RARHNKVAQVEIAEALQEFPSSLPSA-----RESAYAAWVSISVGCNNSCTFCIVPSLRG 176 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256 E+ RS ++ E L+D+GV E+TLLGQNVNA+ L ++ F+ LL + + Sbjct: 177 KEVDRSPDDILAEVASLVDDGVLEVTLLGQNVNAYGVSFADPALPRDRGAFARLLRACGD 236 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I GL R+R+T+ HP + +D +I+A + P LH+P+QSGSDR+L++M R + A Y Sbjct: 237 IDGLERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERYL 296 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 IIDR+R+ P AI++D IVGFPGET++DF AT+D+V + ++ AF+F+YS R GTP + Sbjct: 297 GIIDRVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFSAAFTFQYSKRPGTPAA 356 Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQII 414 ++ Q+ + V + ERL+ LQ+++ Q N A VGQ + Sbjct: 357 DLDGQLPKAVVQERYERLVALQEEISLQG---NQALVGQTV 394 >gi|213616133|ref|ZP_03371959.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 316 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 147/309 (47%), Positives = 209/309 (67%), Gaps = 8/309 (2%) Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVDGGY 170 EGE I +R+ V+++ GPQT +RLPE++ R G R VVD + +KF+RL Sbjct: 2 EGEHIRQRAHYVDIIFGPQTLHRLPEMINSVR-GDRSPVVDISFPEIEKFDRLP-----E 55 Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 R G TAF++I EGC+K+CT+CVVPYTRG E+SR ++ E +L GV E+ LLGQ Sbjct: 56 PRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQ 115 Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290 NVNAWRG+ DG TF+DLL ++ I G+ R+R+TTSHP + +D +I+ + D L+ + Sbjct: 116 NVNAWRGENYDGTTGTFADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSF 175 Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350 LHLPVQSGSDR+L M R HTA EY+ II ++R+ RPDI ISSDFIVGFPGET DDF T Sbjct: 176 LHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKT 235 Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410 M L+ + + ++SF +S R GTP ++M++ V E K +RL LQ+++ +Q ++++ + Sbjct: 236 MKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRML 295 Query: 411 GQIIEVLIE 419 G +L+E Sbjct: 296 GTTQRILVE 304 >gi|319948419|ref|ZP_08022558.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dietzia cinnamea P4] gi|319437923|gb|EFV92904.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dietzia cinnamea P4] Length = 522 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 160/453 (35%), Positives = 261/453 (57%), Gaps = 35/453 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------DLIVLNTCHIREKAAEKV 80 + V+++GCQMNV+DS R+ + + GY D DL+V NTC +RE A ++ Sbjct: 21 YQVRTFGCQMNVHDSERLSGVLDAAGYVPFEGDADPATGSLPDLVVFNTCAVRENADNRL 80 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 Y LG +R K++ + L + V GC+AQ + + ++ R+P V+VV G LP LL Sbjct: 81 YGTLGHLRPWKDANPR----LQIAVGGCLAQKDKDAVVSRAPWVDVVFGTHNLGHLPTLL 136 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 +R+R +R + + D + R ++++ GC+ CTFC+VP RG Sbjct: 137 DRSRHNERA---EVEIADSLQHFPSTLPA-TRDSAYAGWVSVSVGCNNTCTFCIVPSLRG 192 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-----DGEKCTFSDLLYSLS 255 E+ R +V+ E + L D GV E+TLLGQNVNA+ G+ +K F+ LL + Sbjct: 193 KEVDRRPGEVLAEMQALADEGVLEVTLLGQNVNAY-GRSFHDPDEPSDKGAFAKLLRAAG 251 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 I+G+ R+R+T+ HP + +D +I+A + P LH+P+QSGSDR+L++M R + + + Sbjct: 252 RIEGIERIRFTSPHPAEFTDDVIEAMASTPTVCPQLHMPLQSGSDRVLRAMRRSYRSERF 311 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 IIDR+R+ P AI++D IVGFPGET++DF+AT+D+V+K ++ AF+F+YSPR GTP Sbjct: 312 LGIIDRVRAAMPHAAITTDIIVGFPGETEEDFQATLDVVEKARFSSAFTFQYSPRPGTPA 371 Query: 376 SNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKL 428 + M +Q+ + V + ERL+ LQ+++ ++ N A VG+++E+L+ K ++ Sbjct: 372 ATMEDQIPKAVVQERYERLIALQERITLEE---NQAQVGRVVELLVTADEGRKDAATARM 428 Query: 429 VGRSP-----WLQSVVLNSKNHNIGDIIKVRIT 456 GR+ V + GD++ R+T Sbjct: 429 TGRARDGRLVHFAPVGEAADRVRPGDVVTTRVT 461 >gi|329736221|gb|EGG72493.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus epidermidis VCU028] Length = 514 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 169/446 (37%), Positives = 263/446 (58%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ M + + GY + +++AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK KE D L+ V GC++Q E +IL+ V++V G + LPE+LE A Sbjct: 130 LKHLK----KERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V G+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDIIENLPKVRDGH-----IKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R+L G EITLL QNVN++ GK ++G DLL +S+I + R+ Sbjct: 241 SRRPEDIIDEVRELAREGYQEITLLDQNVNSY-GKDIEGLDYELGDLLEDISKI-DIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I+ ++P++HLPVQSG++++LK M R++T Y ++ RI+ Sbjct: 299 RFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P ET++ F T+ L D + + A+++ YS R GTP + M + V Sbjct: 359 EAIPNVALTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442 VK ERL L KK+ G+I+ VL E K++ L G + + V Sbjct: 419 LEVKKERLQRLNKKVGIYSQQAMSQYEGKIVTVLCEGSSKKDENVLAGYTDKNKLVNFKG 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 +IG ++ V+I + K +L G + Sbjct: 479 PRESIGKLVDVKIDEAKQYSLNGTFI 504 >gi|254776064|ref|ZP_05217580.1| hypothetical protein MaviaA2_15530 [Mycobacterium avium subsp. avium ATCC 25291] Length = 490 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 163/414 (39%), Positives = 244/414 (58%), Gaps = 21/414 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + V++YGCQMNV+DS R+ + + GY R + AD++V NTC +RE A K+Y L Sbjct: 4 YQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFNTCAVRENADNKLYGNLS 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + R + ++ + V GC+AQ + E +LRR+P V+VV G LP LLERAR Sbjct: 64 HL----APRKRGNPEMQIAVGGCLAQKDREAVLRRAPWVDVVFGTHNIGSLPTLLERARH 119 Query: 146 GKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K V+ +++ L R+ A+++I GC+ CTFC+VP RG E+ Sbjct: 120 NKAAQVEIAEALQQFPSSLPSA-----RESAYAAWVSISVGCNNSCTFCIVPSLRGKEVD 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGL 260 RS ++ E R L+ +GV E+TLLGQNVNA+ L ++ F+ LL + EI GL Sbjct: 175 RSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRGAFARLLRACGEIDGL 234 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP + +D +I+A + P LH+P+QSGSDR+L++M R + A + IID Sbjct: 235 ERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERFLGIID 294 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R+ P AI++D IVGFPGET++DF AT+D+V + +A AF+F+YS R GTP + + Sbjct: 295 RVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAAELDG 354 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 Q+ + V + ERL+ LQ+ + Q N A VGQ +E+L+ K R Sbjct: 355 QIPKAVVQERYERLVELQESISLQG---NQALVGQTVELLVATGEGRKDSATAR 405 >gi|41408944|ref|NP_961780.1| hypothetical protein MAP2846c [Mycobacterium avium subsp. paratuberculosis K-10] gi|81413559|sp|Q73W15|MIAB_MYCPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|41397303|gb|AAS05163.1| hypothetical protein MAP_2846c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 517 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 163/414 (39%), Positives = 244/414 (58%), Gaps = 21/414 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + V++YGCQMNV+DS R+ + + GY R + AD++V NTC +RE A K+Y L Sbjct: 31 YQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFNTCAVRENADNKLYGNLS 90 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + R + ++ + V GC+AQ + E +LRR+P V+VV G LP LLERAR Sbjct: 91 HL----APRKRGNPEMQIAVGGCLAQKDREAVLRRAPWVDVVFGTHNIGSLPTLLERARH 146 Query: 146 GKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K V+ +++ L R+ A+++I GC+ CTFC+VP RG E+ Sbjct: 147 NKAAQVEIAEALQQFPSSLPSA-----RESAYAAWVSISVGCNNSCTFCIVPSLRGKEVD 201 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGL 260 RS ++ E R L+ +GV E+TLLGQNVNA+ L ++ F+ LL + EI GL Sbjct: 202 RSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRGAFARLLRACGEIDGL 261 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP + +D +I+A + P LH+P+QSGSDR+L++M R + A + IID Sbjct: 262 ERVRFTSPHPAEFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAERFLGIID 321 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R+ P AI++D IVGFPGET++DF AT+D+V + +A AF+F+YS R GTP + + Sbjct: 322 RVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAAELDG 381 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 Q+ + V + ERL+ LQ+ + Q N A VGQ +E+L+ K R Sbjct: 382 QIPKAVVQERYERLVELQESISLQG---NQALVGQTVELLVATGEGRKDSATAR 432 >gi|308068737|ref|YP_003870342.1| hypothetical protein PPE_01968 [Paenibacillus polymyxa E681] gi|305858016|gb|ADM69804.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 517 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 174/447 (38%), Positives = 267/447 (59%), Gaps = 14/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + V ++GCQMN +DS ++ + GY+ +AD+I+LNTC IRE A +KV+ L Sbjct: 74 KHYIVYTFGCQMNEHDSETIKGLLEQMGYQATEDRKEADIILLNTCAIRENAEDKVFGEL 133 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK E LL+ V GC++Q E I+++ V+++ G +RLP+L++ Sbjct: 134 GHLKHLKT----EKPGLLLGVCGCMSQEENVVNRIMQKHGFVDMIFGTHNIHRLPQLVKE 189 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A F K +V +S E I++ ++ G+ A++ I GCDKFCT+C+VP+TRG E Sbjct: 190 ALFSKEMVVEVWSKEG-----DIIENLPKKREGMRAWVNIMYGCDKFCTYCIVPFTRGKE 244 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR V+ E R L G EITLLGQNVNA+ GK L F DL+ + +I + R Sbjct: 245 RSRRPEDVIAEVRDLARQGFKEITLLGQNVNAY-GKDLKDLNYRFGDLMDDMRKI-NIPR 302 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHPRD D L++ G L+ ++HLPVQSG+ ILK MNR++T ++ +I Sbjct: 303 VRFTTSHPRDFDDHLVEVLGKGGNLVEHIHLPVQSGNTDILKKMNRKYTRERVLELAAKI 362 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++ P +++++D IVGFPGETD+ F T+ LV ++GY A++F YSPR GTP ++M + V Sbjct: 363 KAAVPHVSLTTDIIVGFPGETDEQFEDTLSLVREVGYDFAYTFIYSPREGTPAASMEDNV 422 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441 +VK ERL L + + + FN G+++EVL+E K K L GR+ + V Sbjct: 423 PMSVKKERLRRLNIAVNQNSLRFNSRLRGEVVEVLVEGESKNDSKVLAGRTRSNKLVHFE 482 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++V+IT+ + G+LV Sbjct: 483 GSKDLIGSFVQVKITEPMTFYIKGDLV 509 >gi|260172734|ref|ZP_05759146.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides sp. D2] gi|315921024|ref|ZP_07917264.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694899|gb|EFS31734.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 460 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 167/452 (36%), Positives = 266/452 (58%), Gaps = 20/452 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD + +NTC IR+ A +K+ + L Sbjct: 20 KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK + L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 80 EFFHSLKKKKKH----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 189 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + GE TF LL +++E VR Sbjct: 190 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVR 249 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++T Y + I Sbjct: 250 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 309 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 + + PD +++D GF ET++D ++ L+++ GY AF FKYS R GT S LE Sbjct: 310 KRIIPDCGLTTDIFSGFHSETEEDHALSLSLMEECGYDAAFMFKYSERPGTYASKHLEDN 369 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N C+G+ EVL+E K + +L GR+ + Sbjct: 370 VSEEVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 426 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 VV + H +GD + VR+T+ +TL GE VV Sbjct: 427 VVFDRGTHRVGDFVNVRVTEASSATLKGEEVV 458 >gi|296188730|ref|ZP_06857117.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium carboxidivorans P7] gi|296046657|gb|EFG86104.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium carboxidivorans P7] Length = 386 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 159/368 (43%), Positives = 232/368 (63%), Gaps = 14/368 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF++++GCQMN DS ++ M GYER D+DLI+ NTC +RE A KVY LG Sbjct: 15 FFIETWGCQMNEEDSEKLSGMLKKIGYERTEVKQDSDLIIFNTCCVRENAELKVYGNLGA 74 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ LK+ + L++ + GC+ Q EG +EI++R P V+++ G Y+ PE L R + Sbjct: 75 LKKLKDKKPD----LIIAICGCMMQQEGMAKEIVKRFPFVDIIFGTHNAYKFPEYLNRVK 130 Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + + ED IV+G +RK V AF+TI GC+ FCT+C+VP+ RG E Sbjct: 131 QEQNSIIEIQNKED-----GIVEGLPIDRKSDVKAFVTIMYGCNNFCTYCIVPFVRGRER 185 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +E + LI G EITLLGQNVN++ GK L+ K +F++LL ++EI+GL R+ Sbjct: 186 SRKPEDIENEIKDLISKGYKEITLLGQNVNSY-GKDLEP-KVSFANLLRRINEIEGLERI 243 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 ++ T HP+D + ++ A + + + +HLPVQSGS RILK MNR +T +Y ++ RIR Sbjct: 244 KFMTPHPKDFTQDVLDAIAECENVCEQVHLPVQSGSSRILKKMNRHYTKEQYLDLVRRIR 303 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PD+AI++D IVGFPGET++DF T+ L ++ Y AF+F YS R GTP M EQ+ Sbjct: 304 ETIPDVAITTDIIVGFPGETEEDFEETLSLAREVQYDSAFTFIYSRRKGTPADEMEEQIA 363 Query: 384 ENVKAERL 391 E+VK ER Sbjct: 364 EDVKHERF 371 >gi|257791365|ref|YP_003181971.1| RNA modification enzyme, MiaB family [Eggerthella lenta DSM 2243] gi|257475262|gb|ACV55582.1| RNA modification enzyme, MiaB family [Eggerthella lenta DSM 2243] Length = 459 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 172/459 (37%), Positives = 265/459 (57%), Gaps = 35/459 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F ++++GCQMN +DS R+ M G +V++++DAD++ TC +RE A ++Y G+ Sbjct: 10 FCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADVVAFMTCCVREAADTRLY---GQ 66 Query: 87 IRNLKNSRIKEGGDL---LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + +LKN ++ G L +V V GC+ Q +GE+++ ++VV G LP LLE A Sbjct: 67 VASLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAA 126 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYN--------RKRGVTAFLTIQEGCDKFCTFCVV 195 +E+ ++ ++D + R+ A+L I GC+ FC++C+V Sbjct: 127 ------------LEEGSHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIV 174 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PY RG E SR L +V EA + + GV EITLLGQNVN++ G+ L G F+ +L +L Sbjct: 175 PYVRGREKSRPLEDIVAEAERYVAAGVKEITLLGQNVNSY-GRDLYGSP-RFAQVLDALD 232 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + G+ RLR+ TSHP+D++D ++ L LMP LHLPVQSGSD +L +MNRR+T Y Sbjct: 233 QT-GIERLRFATSHPKDLNDEVVGRFATLRSLMPALHLPVQSGSDAVLAAMNRRYTRDHY 291 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 R ++ ++R PDIA+S+D IVGFPGET DF T LVD++GY Q F+F YS R GTP Sbjct: 292 RALVAKLRDAVPDIALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPA 351 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPW 434 ++M + V +R L ++++ N +G ++VL+E K +L+ G+SP Sbjct: 352 ASMDDDTPREVIQQRFDRLVDLVQQRAFEANQRDLGSTVDVLVEGASKRDERLLAGKSPK 411 Query: 435 LQSVVLNSK-----NHNIGDIIKVRITDVKISTLYGELV 468 Q+V + G ++VR+ + K L GE+V Sbjct: 412 NQTVHAPAPAGVRAEDLAGSTVRVRVDEAKTWYLAGEIV 450 >gi|310828246|ref|YP_003960603.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium limosum KIST612] gi|308739980|gb|ADO37640.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium limosum KIST612] Length = 439 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 161/445 (36%), Positives = 265/445 (59%), Gaps = 15/445 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + + ++GCQMN DS ++ + + GY ++ A +++LNTC +RE A +V+ L Sbjct: 3 KTYKIMTFGCQMNENDSEKISGLLKNMGYTPEEDVNKAGVVILNTCSVRENADVRVFGNL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-E 141 G +++K K DL++ V GC+ Q ++I + P V++V G ++ P++L Sbjct: 63 GTFKSVK----KVNPDLVLAVCGCMMQQPEIVKKIKEKYPQVDLVFGTHNIHQFPQMLGN 118 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G+R+ + + E L + +RK +F+TI GC+ FCT+C+VPYTRG Sbjct: 119 YLQRGERIFEIWDDSHEIIEDLPV-----DRKYPFKSFVTIMNGCNNFCTYCIVPYTRGR 173 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++++E +L D G E+TLLGQNVN++ G F+DLL L++I+ + Sbjct: 174 EVSRQPEKIIEEVTRLADEGCLEVTLLGQNVNSYGNDLKTGYH--FADLLRDLNQIEKIK 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D++D +I+A D + P +HL +QSGS R+LK+MNRR+T + ++D+ Sbjct: 232 RIRFMTSHPKDLTDEVIEAIAQCDKVCPAIHLAIQSGSTRVLKAMNRRYTKEQIIDLVDK 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +RS PD+AI++D IVGFPGET++DF+ T++++ + AFSF YS R GTP + M Q Sbjct: 292 VRSRIPDVAITTDIIVGFPGETEEDFQDTLEVMRACKFDSAFSFIYSIRTGTPAATMENQ 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440 + + +K +RL L LR+ N G+++ VL+E+ K +L GR+ + V Sbjct: 352 IPDEIKHDRLNRLLDVLRDISFGLNSKYEGRVLPVLVEEPSKNNSDRLSGRTETGKLVNF 411 Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465 NIG I+ V+IT +L G Sbjct: 412 EGSFENIGKIVNVKITKAGSFSLTG 436 >gi|317490506|ref|ZP_07948986.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA] gi|316910399|gb|EFV32028.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA] Length = 452 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 172/459 (37%), Positives = 265/459 (57%), Gaps = 35/459 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F ++++GCQMN +DS R+ M G +V++++DAD++ TC +RE A ++Y G+ Sbjct: 3 FCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADIVAFMTCCVREAADTRLY---GQ 59 Query: 87 IRNLKNSRIKEGGDL---LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + +LKN ++ G L +V V GC+ Q +GE+++ ++VV G LP LLE A Sbjct: 60 VASLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAA 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYN--------RKRGVTAFLTIQEGCDKFCTFCVV 195 +E+ ++ ++D + R+ A+L I GC+ FC++C+V Sbjct: 120 ------------LEEGGHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIV 167 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PY RG E SR L +V EA + + GV EITLLGQNVN++ G+ L G F+ +L +L Sbjct: 168 PYVRGREKSRPLEDIVAEAERYVAAGVKEITLLGQNVNSY-GRDLYGSP-RFAQVLDALD 225 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + G+ RLR+ TSHP+D++D ++ L LMP LHLPVQSGSD +L +MNRR+T Y Sbjct: 226 QT-GIERLRFATSHPKDLNDEVVGRFATLRSLMPALHLPVQSGSDAVLAAMNRRYTRDHY 284 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 R ++ ++R PDIA+S+D IVGFPGET DF T LVD++GY Q F+F YS R GTP Sbjct: 285 RALVAKLRDAVPDIALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPA 344 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPW 434 ++M + V +R L ++++ N +G ++VL+E K +L+ G+SP Sbjct: 345 ASMDDDTPREVIQQRFDRLVDLVQQRAFEANQRDLGSTVDVLVEGASKRDERLLAGKSPK 404 Query: 435 LQSVVLNSK-----NHNIGDIIKVRITDVKISTLYGELV 468 Q+V + G ++VR+ + K L GE+V Sbjct: 405 NQTVHAPAPAGVRAEDLAGSTVRVRVDEAKTWYLAGEIV 443 >gi|255693332|ref|ZP_05417007.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides finegoldii DSM 17565] gi|260620909|gb|EEX43780.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides finegoldii DSM 17565] Length = 455 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 166/449 (36%), Positives = 264/449 (58%), Gaps = 20/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD + +NTC IR+ A +K+ + L Sbjct: 18 KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK + L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 78 EFFHSLKKKKKH----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 132 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 133 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + GE TF LL +++E VR Sbjct: 188 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPTGETVTFPMLLRTVAEAAPGVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++T Y + I Sbjct: 248 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 + + PD +++D GF ET++D ++ L+++ GY AF FKYS R GT S LE Sbjct: 308 KRIIPDCGLTTDIFSGFHSETEEDHAMSLSLMEECGYDAAFMFKYSERPGTYASKHLEDN 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N C+G+ EVL+E K + +L GR+ + Sbjct: 368 VPEEVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466 VV + H +GD + VRIT+ +TL GE Sbjct: 425 VVFDRGTHRVGDFVNVRITEASSATLKGE 453 >gi|119868239|ref|YP_938191.1| RNA modification protein [Mycobacterium sp. KMS] gi|229890568|sp|A1UEZ3|MIAB_MYCSK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|119694328|gb|ABL91401.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium sp. KMS] Length = 529 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 167/448 (37%), Positives = 258/448 (57%), Gaps = 40/448 (8%) Query: 13 MVSQIVDQCI-----VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67 M S + Q V + + V++YGCQMNV+DS R+ + GY R DAD++V Sbjct: 1 MTSTVTQQAANALPPVARTYQVRTYGCQMNVHDSERLAGLLEDAGYRRAADGADADVVVF 60 Query: 68 NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127 NTC +RE A K+Y L + K S + + + V GC+AQ + + +LRR+P V+VV Sbjct: 61 NTCAVRENADNKLYGNLSHLAPRKRSEPQ----MQIAVGGCLAQKDRDAVLRRAPWVDVV 116 Query: 128 VGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186 G LP LLERAR + V+ ++++ L R+ +++I GC Sbjct: 117 FGTHNIGSLPTLLERARHNRAAQVEIAEALQEFPSTLPAA-----RESAYAGWVSISVGC 171 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----------- 235 + CTFC+VP RG E+ R V+ E + L+D GV E+TLLGQNVNA+ Sbjct: 172 NNTCTFCIVPSLRGKEVDRRPGDVLAEIQTLVDQGVLEVTLLGQNVNAYGVSFAADERLR 231 Query: 236 ----RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 + + + F++LL + I GL R+R+T+ HP + +D +I+A + + P L Sbjct: 232 EDPRMWQSVPRNRGAFAELLRACGRIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPAL 291 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 H+P+QSGSDRIL++M R + A +Y IIDR+R+ PD AI++D IVGFPGET++DF+AT+ Sbjct: 292 HMPLQSGSDRILRAMRRSYRAEKYLGIIDRVRAAIPDAAITTDLIVGFPGETEEDFQATL 351 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDA 408 D+V ++ AF+F+YS R GTP ++M Q+ + V +E RL+ LQ+++ ++ N A Sbjct: 352 DVVAASRFSSAFTFQYSKRPGTPAADMPGQLPKAVVSERYQRLIELQERISLEE---NQA 408 Query: 409 CVGQIIEVLIEKHGKEK----GKLVGRS 432 VG+ +E+L+ K +L GR+ Sbjct: 409 QVGRTLELLVATGEGRKDAATARLSGRA 436 >gi|254431186|ref|ZP_05044889.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobium sp. PCC 7001] gi|197625639|gb|EDY38198.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobium sp. PCC 7001] Length = 476 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 174/456 (38%), Positives = 265/456 (58%), Gaps = 27/456 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM + + GY + +ADL++ NTC IR+ A +KVYS+LGR Sbjct: 34 YWITTFGCQMNKADSERMAGILEAMGYREAGAELEADLVLYNTCTIRDNAEQKVYSYLGR 93 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + +L +VVAGCVAQ EGE +LRR P +++V+GPQ RL LL + G Sbjct: 94 ----QAQRKRANPNLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLETLLSQVEQG 149 Query: 147 KRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++VV T+ + +ED I R V A++ + GC++ CT+CVVP RG E S Sbjct: 150 QQVVATEEHHILED------ITTA--RRDSSVCAWVNVIYGCNERCTYCVVPSVRGQEQS 201 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIK 258 R + E L G E TLLGQN++A+ G+ L G + T +DLL + +++ Sbjct: 202 RLPEAIRLEMEGLAARGFKETTLLGQNIDAY-GRDLPGITPEGRRRHTLTDLLQFVHDVE 260 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R+R+ TSHPR ++ LI A L + + H+P QSG D +LK+M R +T YR+I Sbjct: 261 GIERIRFATSHPRYFTERLIDACAALPKVCEHFHIPFQSGDDAVLKAMARGYTVERYRRI 320 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + RIR PD AIS+D IV FPGETD FR T+ LV++IG+ Q + YSPR TP ++ Sbjct: 321 VHRIRERMPDAAISADVIVAFPGETDAQFRNTLRLVEEIGFDQVNTAAYSPRPNTPAADW 380 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRS----- 432 +Q+ E VK ERL L + +Q + G+ +VL+E + ++ + +GR+ Sbjct: 381 PDQLSEAVKVERLRELNALVEQQARRRSARYAGRTEQVLVEGTNPRDPSQRMGRTRTNRL 440 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + ++ + + GD++ VRI +V+ +L G L Sbjct: 441 TFFPALRPDGRAVEPGDLVNVRIEEVRAFSLSGTLA 476 >gi|283768308|ref|ZP_06341220.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bulleidia extructa W1219] gi|283104700|gb|EFC06072.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bulleidia extructa W1219] Length = 480 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 171/448 (38%), Positives = 258/448 (57%), Gaps = 16/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++++VK+YGCQ NV D + M G+ + AD+I+ NTC IR A EKV + + Sbjct: 43 KKYYVKTYGCQANVRDGESLSGMLEMMGFTYAEVPEKADVILFNTCAIRRAAEEKVMAEI 102 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK KE +++ V+ GC+AQ + EE+L++ P ++++ G YR P LL+ Sbjct: 103 GNLKYLK----KEKPNIIFVLCGCMAQEKDVVEELLQKHPQLDLIFGTHNLYRFPALLQE 158 Query: 143 ARFGKRVVDTDYSVEDKF-ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 K YS E + E L + R F+ I GCDKFCT+C+VPYTRG Sbjct: 159 VMVKKIQKVEVYSQEGEVVESLPV-----KRSMSSKGFVNIMYGCDKFCTYCIVPYTRGK 213 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR + +++E L +G E+ LLGQNVNA+ GK L E F+DLL ++S+ G+ Sbjct: 214 ERSRRMKDILEEVSALKKSGRKEVVLLGQNVNAY-GKDLHMED-GFTDLLRAISDT-GIE 270 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHPRD LI + +MP+LH PVQSGS+ ILK M R +T Y + D Sbjct: 271 RIRFYTSHPRDYRSSLIDLMAERKNIMPFLHFPVQSGSNEILKRMARGYTVEHYISLYDE 330 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 + P++ ++D IVGFPGE+D+DF TM+LV+ Y A++F YSPR+GTP ++M + Sbjct: 331 MMKKIPNMTFTTDIIVGFPGESDEDFEKTMNLVEHCQYDMAYTFLYSPRVGTPAASMTDS 390 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVL 440 + + VK RL L ++LRE N +G+I+ VL E K+ K+ G + + V Sbjct: 391 ISKEVKKARLQRLNQRLREIAAKKNKVYLGRIVRVLCEGISKKNEKIYAGYTEDNKLVNF 450 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + + +I+ V IT+ TL G ++ Sbjct: 451 SCPWNCMDEIVDVEITETHSYTLNGRVL 478 >gi|78779785|ref|YP_397897.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT 9312] gi|123741439|sp|Q319I4|MIAB_PROM9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|78713284|gb|ABB50461.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prochlorococcus marinus str. MIT 9312] Length = 463 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 174/453 (38%), Positives = 261/453 (57%), Gaps = 23/453 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM GY R + +ADL++ NTC IR+ A KVYSFLGR Sbjct: 21 YWITTFGCQMNKADSERMAGTLEKMGYTRADDELNADLVLYNTCTIRDNAEHKVYSFLGR 80 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + L +VVAGC+AQ EGE +LRR P +++V+GPQ L LL + G Sbjct: 81 ----QAKRKHKIPSLKLVVAGCLAQQEGESLLRRVPELDLVMGPQHVNNLENLLGKVDLG 136 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +V T E+ F I + R+ + ++ I GC++ C++CVVP RG E SR Sbjct: 137 NQVAAT----EETFISEDITNA--RRESSICGWVNIIYGCNERCSYCVVPSVRGKEQSRY 190 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260 + + E +KL D+ EITLLGQN++A+ G+ L G ++ T +DLLY + +I G+ Sbjct: 191 PNAIKSEIQKLADDNFKEITLLGQNIDAY-GRDLPGTTKEGRKENTLTDLLYYIHDINGI 249 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHPR S LI+A +LD + + H+P QSG+D ILK M+R + +Y+ IID Sbjct: 250 SRIRFATSHPRYFSKRLIQACYELDKVCEHFHIPFQSGNDEILKQMSRGYNIKKYKNIID 309 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IRS+ PD +I++D IV FPGET+ ++ T+ L+ IG+ Q + YSPR TP + Sbjct: 310 NIRSLMPDASITADAIVAFPGETEQQYQDTLKLISDIGFDQVNTAAYSPRPNTPAAVWSN 369 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439 Q+ E VK RL + + + + N + I VLIE + K +++GR+ + Sbjct: 370 QLSEEVKKTRLQEINALVEKTARNRNQRYINNIESVLIEGLNPKNSSQIMGRTRTNRLTF 429 Query: 440 LN-----SKNHNIGDIIKVRITDVKISTLYGEL 467 + N ++GD I VRI + + +L GEL Sbjct: 430 VKIPKNIQFNFSLGDEIDVRINEARPFSLTGEL 462 >gi|160945078|ref|ZP_02092304.1| hypothetical protein FAEPRAM212_02597 [Faecalibacterium prausnitzii M21/2] gi|158442809|gb|EDP19814.1| hypothetical protein FAEPRAM212_02597 [Faecalibacterium prausnitzii M21/2] Length = 463 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 184/472 (38%), Positives = 266/472 (56%), Gaps = 19/472 (4%) Query: 3 LFIKLIGVAH--MVSQIVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59 +F++ I H + +++V Q P FV SYGCQ NV D R++ + GY + Sbjct: 2 VFLEYINFEHNTVAAELVRQTYDTPPLAFVHSYGCQQNVNDGERIKGVLVDIGYGLCDKP 61 Query: 60 DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA-QAEGEEIL 118 +DADLI+ NTC +RE A ++V+ +G ++ LK + L++ + GC+A Q E L Sbjct: 62 EDADLILFNTCAVREHAEQRVFGNVGALKGLKEKK----PGLIIGLCGCMANQKHVVEKL 117 Query: 119 RRS-PIVNVVVGPQTYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRG 175 R+S P V++V G LP+L+ ++ + KRV+ D +R IV+ R+ Sbjct: 118 RKSYPYVDLVFGVDGIDTLPQLIAQKLQKHKRVL------LDPAQRPVIVENIPIRRESE 171 Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 A+L I GCD FCT+C+VPY RG E SR ++ E R L++ G EITLLGQNVN++ Sbjct: 172 FRAWLPIMYGCDNFCTYCIVPYVRGREKSRKPGDILAEFRSLVEAGYKEITLLGQNVNSY 231 Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295 GKGL+ E+ FSDLL L + G +R+ TSHP+D S LI L +LHLPV Sbjct: 232 -GKGLE-EQIDFSDLLNLLCTVPGDYHIRFMTSHPKDASHKLIDTIAAQPKLCKHLHLPV 289 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355 Q GSDR+L+ MNR +T +Y ++ID R P I SSD IVGFPGET++DF T++LV Sbjct: 290 QCGSDRLLQQMNRHYTVEQYLELIDYARKTVPGITFSSDIIVGFPGETEEDFVKTLELVR 349 Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415 K+GY Q F+F YS R GT + M + K +R+ L E ++ A VGQ + Sbjct: 350 KVGYMQLFTFIYSKRTGTKAAEMPDPTPRKEKTDRMTRLLATQDEIAMALVKAQVGQTVR 409 Query: 416 VLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 VL+E G+ +G L GR +V + +G V +T + + L GE+ Sbjct: 410 VLVEGFGRNEGTLSGRLDNNLTVEFAADPALLGSYATVHLTGARATVLLGEV 461 >gi|116747867|ref|YP_844554.1| RNA modification protein [Syntrophobacter fumaroxidans MPOB] gi|229891028|sp|A0LFB7|MIAB_SYNFM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|116696931|gb|ABK16119.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Syntrophobacter fumaroxidans MPOB] Length = 456 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 179/463 (38%), Positives = 267/463 (57%), Gaps = 21/463 (4%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 M++ + P+ +V+++GCQMN YDS R + + GY + + DAD+I LNTC + Sbjct: 1 MITPLAKTAPAPRYLYVRTFGCQMNEYDSQRALRLLCAVGYRPTSDIADADVIFLNTCSV 60 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 R+KA +KVYSFLGR+R LK R L +VVAGCVAQ G+ +L+R V++VVG + Sbjct: 61 RDKAEQKVYSFLGRLRRLKAHRPW----LKIVVAGCVAQQLGDGLLKRFEHVDLVVGTRG 116 Query: 133 YYRLPELLERARFGKRVVDTDYSVE------DKFERLSIVDGGYNRKRGVTAFLTIQEGC 186 + LLE KR V + E DK + D V A +TI +GC Sbjct: 117 IGSIASLLEEVERSKRRVAHLPAEELQGFTTDKCRTVGTGD--------VVAQVTIMQGC 168 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246 + FCT+C+VP+ RG E SR+ ++ E L G E+ LLGQNVN++ G+GL + + Sbjct: 169 NNFCTYCIVPHVRGRERSRAPDDILREIDFLASRGAREVLLLGQNVNSY-GRGLP-DPIS 226 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F DLL + + + R+R+TTSHP+D+++ LI+ L L +LHLP QSGSD ILK M Sbjct: 227 FPDLLRRIGKETSIRRVRFTTSHPKDLTEDLIECFAGLPFLCKHLHLPFQSGSDGILKLM 286 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 +R +TA +Y + I R+R V P+IA+S+D IVGFP E+++D+ T+ L++++ + FSF+ Sbjct: 287 HRGYTARQYLEKIARLREVCPEIALSTDVIVGFPAESEEDYLQTLRLIEEVRFDSLFSFR 346 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EK 425 YS R T + ++V +VK RL LQ + + N A G + EVL+E K Sbjct: 347 YSDRPLTRAAGFPDKVPMDVKVRRLARLQSIQADITLQKNLAETGTVREVLVEGPSKASN 406 Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 G++ GR+ + + G I+ VRI +L GEL+ Sbjct: 407 GQMTGRTQQNRIINFQCPVDLTGKIVPVRIVAAYSHSLKGELL 449 >gi|295085878|emb|CBK67401.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacteroides xylanisolvens XB1A] Length = 460 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 167/452 (36%), Positives = 266/452 (58%), Gaps = 20/452 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD + +NTC IR+ A +K+ + L Sbjct: 20 KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK + L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 80 EFFHSLKKKKKH----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 189 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + GE TF LL +++E VR Sbjct: 190 RSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVR 249 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++T Y + I Sbjct: 250 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 309 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 + + PD +++D GF ET++D ++ L+++ GY AF FKYS R GT S LE Sbjct: 310 KRIIPDCGLTTDIFSGFHSETEEDHALSLSLMEECGYDAAFMFKYSERPGTYASKHLEDN 369 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N C+G+ EVL+E K + +L GR+ + Sbjct: 370 VPEEVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 426 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 VV + H +GD + VR+T+ +TL GE VV Sbjct: 427 VVFDRGTHRVGDFVNVRVTEASSATLKGEEVV 458 >gi|332670088|ref|YP_004453096.1| RNA modification enzyme, MiaB family [Cellulomonas fimi ATCC 484] gi|332339126|gb|AEE45709.1| RNA modification enzyme, MiaB family [Cellulomonas fimi ATCC 484] Length = 522 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 172/463 (37%), Positives = 273/463 (58%), Gaps = 37/463 (7%) Query: 15 SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD----LIVLNTC 70 + + D VP+ + VK+ GCQMNV+DS M M GY + D A +IV+NTC Sbjct: 9 TPLADATDVPRTYLVKTLGCQMNVHDSEHMAGMLEQAGYVPASPADAAAEDADVIVINTC 68 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130 +RE AA+K+Y LGR+ K +R + + V GC+AQ + I+ R+P V+VV G Sbjct: 69 AVRENAADKLYGNLGRLAGTKRARPG----MQIAVGGCLAQKDRTGIVERAPWVDVVFGT 124 Query: 131 QTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTA-FLTIQEGCDK 188 LP LLERAR ++ V+ S++ L R+ V A +++I GC+ Sbjct: 125 HNLDVLPVLLERARHNQKAEVEIAESLQVFPSTLP------TRRESVYAGWVSISVGCNN 178 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTF 247 CTFC+VP+ RG E R +++ E L+ G E+TLLGQNVN++ G++ G++ F Sbjct: 179 TCTFCIVPHLRGKERDRRPGEILAEVEALVQQGAIEVTLLGQNVNSY---GVEFGDRGAF 235 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 + LL + ++GL RLR+T+ HP +D +I+A +MP LH+P+QSGSDR+L++M Sbjct: 236 AKLLRAAGAVEGLERLRFTSPHPAAFTDDVIEAMAATPTVMPQLHMPLQSGSDRVLRAMR 295 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + + + I+DR+R+ PD AI++D IVGFPGET++DF T+ +V+ ++ AF+F+Y Sbjct: 296 RSYRSERFLGILDRVRAAMPDAAITTDVIVGFPGETEEDFAETLRVVEASRFSSAFTFQY 355 Query: 368 SPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK 423 SPR GTP +++ +Q+ + V + ERL+ LQ+++ ++ N A VG+ +EVL+ E G+ Sbjct: 356 SPRPGTPAADLPDQLPKAVVQERYERLVALQERISLEE---NRAQVGRTVEVLVAEGEGR 412 Query: 424 EKG---KLVGRSP-------WLQSVVLNSKNHNIGDIIKVRIT 456 + G +L GR+ L + + GD++ V +T Sbjct: 413 KDGVTERLSGRAQDNRLVHLALPAGLAPHDAPRPGDVVTVTVT 455 >gi|295395412|ref|ZP_06805611.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brevibacterium mcbrellneri ATCC 49030] gi|294971734|gb|EFG47610.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brevibacterium mcbrellneri ATCC 49030] Length = 488 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 166/442 (37%), Positives = 260/442 (58%), Gaps = 24/442 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + VK+YGCQMNV+DS R+ + GY + AD++V NTC +RE A ++Y LGR Sbjct: 9 YEVKTYGCQMNVHDSERLSGLLDDAGYTPAEPNEQADVVVFNTCAVRENADNRLYGNLGR 68 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + +K + +L + V GC+AQ + + I+ R+P V+VV G LP LLERAR Sbjct: 69 LAEVKETHP----ELQIAVGGCMAQKDRDTIVERAPWVDVVFGTHNMGSLPVLLERARHN 124 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K + VE K E L + +R T +++I GC+ CTFC+VP+ RG E Sbjct: 125 K-----EAQVEIK-ESLEVFPSTLPTRRESTHSGWVSISVGCNNTCTFCIVPHLRGKEKD 178 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ E L GV E+TLLGQNVN++ + D + F LL ++ +++G+ R+R Sbjct: 179 RRPGDILAEVEALAAQGVIEVTLLGQNVNSYGTEFRD--RQAFGKLLRAVGKVQGIERVR 236 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP SD +I A + +MP LH+P+QSGSD +LK+M R + + I+D++R Sbjct: 237 FTSPHPAAFSDDVIDAMAETPTVMPQLHMPLQSGSDTVLKAMRRSYRTKRFMGILDKVRE 296 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P +I++D IVGFPGET++DF+ TMD+V + + QA++F+YS R GTP + M Q+ + Sbjct: 297 RIPHASITTDIIVGFPGETEEDFQQTMDVVREARFTQAYTFQYSIRPGTPAAAMENQIPK 356 Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 +V + ERL+ LQ ++ ++ N ACVG +EVLI + G++ GR+ + V + Sbjct: 357 DVVQERFERLVALQDEIAWEE---NKACVGNQVEVLINTGPDAQHGRMSGRARDNRLVHV 413 Query: 441 NSK---NHNIGDIIKVRITDVK 459 ++ + GDI+ +T+ K Sbjct: 414 RAQEGLDARPGDIVTATVTEAK 435 >gi|302522287|ref|ZP_07274629.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB78] gi|302431182|gb|EFL02998.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB78] Length = 506 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 173/454 (38%), Positives = 263/454 (57%), Gaps = 29/454 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD---ADLIVLNTCHIREKAAEKVYSF 83 + +++YGCQMNV+DS R+ + GY R + AD++V NTC +RE A ++Y Sbjct: 14 YEIRTYGCQMNVHDSERLAGLLEGAGYVRAPEGAEDGGADVVVFNTCAVRENADNRLYGN 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+ K R + + V GC+AQ + + I+ R+P V+VV G +LP LLERA Sbjct: 74 LGRLAPKKTERP----GMQIAVGGCLAQKDRQTIVDRAPWVDVVFGTHNIGKLPVLLERA 129 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + V+ S+E L R+ A++++ GC+ CTFC+VP RG E Sbjct: 130 RVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRGKE 184 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + I+GL Sbjct: 185 KDRRPGDILAEVEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGGIEGLE 241 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HPRD +D +I A + +MP LH+P+QSGSD +L++M R + Y II++ Sbjct: 242 RVRFTSPHPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDSVLRAMRRSYRQDRYLGIIEK 301 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ PD AIS+D IVGFPGET++DF T+ +V + +A AF+F+YS R GTP + M Q Sbjct: 302 VRAAIPDAAISTDIIVGFPGETEEDFEQTLHVVREARFAAAFTFQYSKRPGTPAAEMENQ 361 Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434 + + V + ERL+ LQ+++ ++ N VG+ ++V++ E G++ G +L GR+P Sbjct: 362 IPKEVVQKRYERLVALQEEISWEE---NKKQVGRTLDVMVAEGEGRKDGATQRLSGRAPD 418 Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 + V + GD++ V IT L E Sbjct: 419 NRLVHFTKPQDPVRPGDVVTVDITYAAPHHLLAE 452 >gi|227504866|ref|ZP_03934915.1| possible tRNA 2-methylthioadenine synthetase [Corynebacterium striatum ATCC 6940] gi|227198557|gb|EEI78605.1| possible tRNA 2-methylthioadenine synthetase [Corynebacterium striatum ATCC 6940] Length = 537 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 158/417 (37%), Positives = 240/417 (57%), Gaps = 22/417 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + GY + DLIV NTC +RE A +++Y LG Sbjct: 37 YEVRTFGCQMNVHDSERISGLLEEAGYVAAAEEQEPDLIVFNTCAVRENADKRLYGTLGA 96 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 ++ K + + + V GC+AQ + + +L +P V+ V G LP LLERAR Sbjct: 97 LKKTKENHPG----MQIAVGGCLAQKDKDTVLDNAPWVDAVFGTHNMAALPTLLERARHN 152 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + D E V R+ ++++ GC+ CTFC+VP RG E R Sbjct: 153 D---EAQVEIVDSLEAFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEEDRR 208 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ++ E + L+D GV E+TLLGQNVNA+ L +K FS LL + +I+GL R Sbjct: 209 PGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFADPDLPRDKFAFSKLLREVGKIEGLER 268 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+T+ HP + + +I A + + P LH+P+QSGSDRILK M R + + ++ I+D + Sbjct: 269 LRFTSPHPAEFTSDVIDAMAETPAVCPQLHMPLQSGSDRILKEMRRSYRSKKFLAILDEV 328 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P AI++D IVGFPGET++DF ATMD+V + +A AF+F+YSPR GTP + M +QV Sbjct: 329 REKMPHAAITTDIIVGFPGETEEDFEATMDVVKRARFASAFTFQYSPRPGTPAAEMEQQV 388 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRS 432 +++ + ERL+ LQ ++ ++ N +G E+L++ G K +L GRS Sbjct: 389 PKHIVQERFERLVALQDSIQAEE---NAKLIGTDAELLVQAEGGRKAGETHRLTGRS 442 >gi|254442609|ref|ZP_05056085.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Verrucomicrobiae bacterium DG1235] gi|198256917|gb|EDY81225.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Verrucomicrobiae bacterium DG1235] Length = 461 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 163/451 (36%), Positives = 262/451 (58%), Gaps = 12/451 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++K+YGCQMN DS ++ +GY V++ DAD+++LNTC +R++A +K G Sbjct: 11 RVYIKTYGCQMNERDSEQVASSLRDRGYSIVDTEYDADVVLLNTCSVRDQAEQKAIGKAG 70 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-- 143 ++ K K+ + L+ V GC+AQ G E+ R P +++VVG Q ++R+P+ L+ Sbjct: 71 YLKKHK----KDNPNFLIGVMGCMAQNRGAELFDRLPDLDLVVGTQKFHRVPDHLDNMIQ 126 Query: 144 ---RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G R E+ + +I D +K V AF++I +GC+ C FC+VP TRG Sbjct: 127 SMNGQGPRPSSVLDLGEEAGSQNTIRDH-IGKKGQVQAFVSIMQGCNMNCAFCIVPKTRG 185 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLLYSLSEIK 258 E +R + ++VDE L ++GV EITLLGQ V ++ R + K F LL + EI Sbjct: 186 RERARPIQEIVDEVIGLAESGVKEITLLGQIVTSYGRRDFPVVNGKSPFVQLLEKIEEIP 245 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R+R+T+ HPR L++A+ DL L Y+HLP+Q+G ++ L++MNR +T YR+I Sbjct: 246 GIERIRFTSPHPRGFKQDLVEAYRDLSKLCEYVHLPLQAGCNKTLRAMNRPYTKERYREI 305 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +D +R++ P + S+D IVGFPGET+ DF T + D I + A+ FKYS R GTP M Sbjct: 306 VDSLRAMVPSMYFSTDIIVGFPGETEADFNETAAMFDDIAFDMAYIFKYSIRTGTPAETM 365 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 +Q+ + K R L L + ++ N+ VG +VL+E K+ K VG + ++ Sbjct: 366 PDQIPQEEKERRNQVLLDLLHKHSLARNEGLVGTTEQVLVEGPAKKGDKYVGHTRGWRNA 425 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + ++ +G ++ ++I ST+YG+LV+ Sbjct: 426 IFDANERLVGQLVDLKIDRATASTVYGDLVL 456 >gi|108799124|ref|YP_639321.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium sp. MCS] gi|123178924|sp|Q1BA19|MIAB_MYCSS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|108769543|gb|ABG08265.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium sp. MCS] Length = 525 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 164/433 (37%), Positives = 254/433 (58%), Gaps = 35/433 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 V + + V++YGCQMNV+DS R+ + GY R DAD++V NTC +RE A K+Y Sbjct: 12 VARTYQVRTYGCQMNVHDSERLAGLLEDAGYRRAADGADADVVVFNTCAVRENADNKLYG 71 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L + K S + + + V GC+AQ + + +LRR+P V+VV G LP LLER Sbjct: 72 NLSHLAPRKRSEPQ----MQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLER 127 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 AR + V+ ++++ L R+ +++I GC+ CTFC+VP RG Sbjct: 128 ARHNRAAQVEIAEALQEFPSTLPAA-----RESAYAGWVSISVGCNNTCTFCIVPSLRGK 182 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---------------RGKGLDGEKCT 246 E+ R V+ E + L+D GV E+TLLGQNVNA+ + + + Sbjct: 183 EVDRRPGDVLAEIQTLVDQGVLEVTLLGQNVNAYGVSFAADERLREDPRMWQSVPRNRGA 242 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F++LL + I GL R+R+T+ HP + +D +I+A + + P LH+P+QSGSDRIL++M Sbjct: 243 FAELLRACGRIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPALHMPLQSGSDRILRAM 302 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + A +Y IIDR+R+ PD AI++D IVGFPGET++DF+AT+D+V ++ AF+F+ Sbjct: 303 RRSYRAEKYLGIIDRVRAAIPDAAITTDLIVGFPGETEEDFQATLDVVAASRFSSAFTFQ 362 Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 YS R GTP ++M Q+ + V +E RL+ LQ+++ ++ N A VG+ +E+L+ Sbjct: 363 YSKRPGTPAADMPGQLPKAVVSERYQRLIELQERISLEE---NQAQVGRTLELLVATGEG 419 Query: 424 EK----GKLVGRS 432 K +L GR+ Sbjct: 420 RKDAATARLSGRA 432 >gi|307329234|ref|ZP_07608399.1| RNA modification enzyme, MiaB family [Streptomyces violaceusniger Tu 4113] gi|306885133|gb|EFN16154.1| RNA modification enzyme, MiaB family [Streptomyces violaceusniger Tu 4113] Length = 500 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 173/454 (38%), Positives = 265/454 (58%), Gaps = 29/454 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN---SMDDADLIVLNTCHIREKAAEKVYSF 83 + +++YGCQMNV+DS R+ + G+ R +AD++V NTC +RE A ++Y Sbjct: 9 YEIRTYGCQMNVHDSERLSGLLEEAGFVRATEGTGEGEADIVVFNTCAVRENADNRLYGN 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR+ +K R + + V GC+AQ + + I++++P V+VV G LP LLERA Sbjct: 69 LGRLAPIKARRP----GMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGSLPVLLERA 124 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + V+ S+E L R+ A+++I GC+ CTFC+VP RG E Sbjct: 125 RVQEEAQVEIAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKE 179 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R ++ E L+ GV EITLLGQNVNA+ G D G++ FS LL + +++GL Sbjct: 180 KDRRPGDILAEVETLVAEGVTEITLLGQNVNAY---GSDIGDREAFSKLLRACGKVEGLE 236 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HPRD +D +I A + + +MP LH+P+QSGSD +LK+M R + Y II++ Sbjct: 237 RVRFTSPHPRDFTDDVISAMAETENVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEK 296 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ PD AIS+D IVGFPGET++DF T+ +V + +AQAF+F+YS R GTP + M Q Sbjct: 297 VRAAMPDAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQ 356 Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPW 434 V + V + ERL+ LQ+++ ++ N +G+ +EVL+ E G++ +L GR+ Sbjct: 357 VPKAVVQERYERLVALQEEISWEE---NKKQIGRTLEVLVAEGEGRKDDATRRLSGRAAD 413 Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 + V + GD++ V IT L E Sbjct: 414 NRLVHFARPEEPVRPGDVVTVDITYAAPHHLLAE 447 >gi|295696236|ref|YP_003589474.1| RNA modification enzyme, MiaB family [Bacillus tusciae DSM 2912] gi|295411838|gb|ADG06330.1| RNA modification enzyme, MiaB family [Bacillus tusciae DSM 2912] Length = 484 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 173/459 (37%), Positives = 275/459 (59%), Gaps = 22/459 (4%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 ++Q V V +R+++++YGCQMN +DS M M GY ++ ++ADLI+ NTC +R Sbjct: 30 MAQAVPAVGVGKRYWIRTYGCQMNEHDSEIMAGMLQEMGYRPASAPEEADLILFNTCAVR 89 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS--PIVNVVVGPQ 131 E A +KV+ +GRI+ LK + +LL+ + GC+AQ E R P V++V G Sbjct: 90 ENAEDKVFGEIGRIKPLK----RRHPELLLGLCGCMAQEEKVRQFVRDTFPHVDLVFGTH 145 Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 ++LPEL+ +A + V ++V D+ ++ + + R+ GV A++ IQ GC+K+CT Sbjct: 146 NLHQLPELVVQAMASQETV---FAVWDRPGQV-VENLPKLRQDGVKAWVNIQYGCNKYCT 201 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 +C+VP+TRG E SR VV E ++L + G+ E+TLLGQNVN + GLD F+DLL Sbjct: 202 YCIVPFTRGRERSRLPEDVVAEVKQLAEEGIREVTLLGQNVNDY---GLDLGDVDFADLL 258 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++ I G+ R+R+TTS+P + +D LI + + ++HLPVQSG++RILK MNR +T Sbjct: 259 QQVARIPGIERVRFTTSNPWNFTDKLIDVIAAEEAICEHIHLPVQSGNNRILKRMNRGYT 318 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 Y Q+++RIR P +++++D IVGFPGET+++F+ T+DLV + + AF+F YS R Sbjct: 319 RETYLQLVERIRDRIPGVSLTTDIIVGFPGETEEEFQDTLDLVRTVQFDNAFTFLYSRRQ 378 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVS----FNDACVGQIIEVLIEKHGKEKGK 427 GT + M + K +RL ++L E Q + +++ VG+ +VL+E K + Sbjct: 379 GTAAARMKDDTSLEAKKDRL----RRLNELQAAISRRYHEQLVGKTEDVLVEGESKTNPE 434 Query: 428 -LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 L GR+ + V+L IG I V+I + L G Sbjct: 435 ILAGRTRTNRLVLLQGSRELIGRTIPVQIVGAQTWLLRG 473 >gi|153823302|ref|ZP_01975969.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae B33] gi|126519166|gb|EAZ76389.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae B33] Length = 313 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 149/317 (47%), Positives = 211/317 (66%), Gaps = 6/317 (1%) Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRVVDTDYSVEDKFERLSIVD 167 VA EG+ I R+P V+V+ GPQT +RLPE++++++ V+D + +KF+RL Sbjct: 1 VATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQTSDAPVMDISFPEIEKFDRLP--- 57 Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227 R G TAF++I EGC K+CT+CVVPYTRG E+SR + V+ E +L + GV E+ L Sbjct: 58 --EPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQGVREVNL 115 Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287 LGQNVNA+RG DG C+F++LL ++ I G+ R+R+TTSHP + +D +I + D L Sbjct: 116 LGQNVNAYRGATHDGGICSFAELLRLVATIDGIDRIRFTTSHPLEFTDDIIAVYEDTPEL 175 Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347 + +LHLPVQSGSDRIL M R HTA EY+ II ++R RPDI ISSDFIVGFPGETD DF Sbjct: 176 VSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGETDKDF 235 Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407 + TM L+ + + +FSF +SPR GTP ++ + E VK ERL LQ+++ Q + ++ Sbjct: 236 QDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYELQQQINSQAMRYSR 295 Query: 408 ACVGQIIEVLIEKHGKE 424 +G +L+E K+ Sbjct: 296 LMLGTEQRILVEGPSKK 312 >gi|224476428|ref|YP_002634034.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421035|emb|CAL27849.1| putative radical SAM superfamily protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 513 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 169/446 (37%), Positives = 261/446 (58%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF+K++GCQMN +D+ M +F + GY + AD+I+LNTC IRE A KV+S +G Sbjct: 69 FFIKTFGCQMNAHDTEVMAGIFEALGYTLAEDILKADVILLNTCAIRENAENKVFSEIGN 128 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK R D L+ V GC++Q E +IL+ V+++ G ++LPE+LE A Sbjct: 129 LKHLKRDR----PDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAY 184 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V Y A++ I GCDKFCT+C+VP+TRG E Sbjct: 185 MSKAMVIDVWSKEGDVIENLPKVRDDY-----FKAWVNIMYGCDKFCTYCIVPFTRGKER 239 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE R L G EITLLGQNVN++ GK L + DL +S+I + R+ Sbjct: 240 SRRPQDIIDEVRDLARQGYQEITLLGQNVNSY-GKDLKDIEYDLGDLFEDISKI-DIPRV 297 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I ++P++HLPVQSG+D +LK M R++T Y +++RI+ Sbjct: 298 RFTTSHPWDFTDHMIDVIAKGGNIVPHIHLPVQSGNDAVLKIMGRKYTRESYLDLVNRIK 357 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PD+A+++D IVG+P ET++ F+ T+ L D++ + A+++ YS R GTP + M + V+ Sbjct: 358 TAIPDVALTTDIIVGYPNETEEQFQETLSLYDEVEFEHAYTYLYSQRDGTPAARMKDNVE 417 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 + VK +RL L +K+ GQ++ VL E K+ + L G + + V Sbjct: 418 KEVKKDRLQRLNQKVGYYSERALKGYEGQVVTVLCEGSSKKDNEVLAGYTDKNKLVNFRG 477 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ V+I + K +L G + Sbjct: 478 PKEVIGKLVDVKIDEAKQYSLNGTFL 503 >gi|225021202|ref|ZP_03710394.1| hypothetical protein CORMATOL_01214 [Corynebacterium matruchotii ATCC 33806] gi|224945935|gb|EEG27144.1| hypothetical protein CORMATOL_01214 [Corynebacterium matruchotii ATCC 33806] Length = 526 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 162/449 (36%), Positives = 262/449 (58%), Gaps = 27/449 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + GY+ V + + DLIV NTC +RE A ++Y LG Sbjct: 26 YEVRTFGCQMNVHDSERLSGLLEDAGYQPVVAGNTPDLIVFNTCAVRENADMRLYGTLGS 85 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R++K + + V GC+AQ + + +++++P V+VV G LP LL+RA Sbjct: 86 LRSVKERH----PGMQIAVGGCLAQKDKDAVVKKAPWVDVVFGTHNIGSLPALLKRASHN 141 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + + D E+ V R+ ++++ GC+ CTFC+VP RG EI R Sbjct: 142 HQA---EVEIVDALEQFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEIDRR 197 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ++ E + L+D GV E+TLLGQNVNA+ GL ++ FS LL + EI GL R Sbjct: 198 PGDILAEVQALVDQGVVEVTLLGQNVNAYGVNFADPGLPRDRSAFSRLLRACGEITGLER 257 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP + + +I A + + P LH+P+QSGSD++LK M R + ++ I+D + Sbjct: 258 VRFTSPHPAEFTSDVIDAMAETPTVCPQLHMPLQSGSDKVLKEMRRSYRTKKFLAILDEV 317 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P AI++D IVGFPGET++DF+AT+D+V+K + AF+F+YSPR GTP + +QV Sbjct: 318 RQKIPHAAITTDIIVGFPGETEEDFQATLDVVEKARFTSAFTFQYSPRPGTPAAEYEQQV 377 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRS--- 432 + V + ERL+ LQ+++ ++ N V +E+L++ G +K ++ GR+ Sbjct: 378 PKEVVQERYERLIALQERVCLEE---NQKLVNTEVELLVQADGGKKNAKTHRMTGRARDG 434 Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVK 459 + + S + +I GDII +T+ K Sbjct: 435 RLVHFHPVGSIDQSIRPGDIITTTVTEAK 463 >gi|160915264|ref|ZP_02077477.1| hypothetical protein EUBDOL_01272 [Eubacterium dolichum DSM 3991] gi|158433063|gb|EDP11352.1| hypothetical protein EUBDOL_01272 [Eubacterium dolichum DSM 3991] Length = 480 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 171/447 (38%), Positives = 264/447 (59%), Gaps = 18/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++++++YGCQ N DS + + S + + +AD+I+LNTC IR+ A +KV L Sbjct: 44 KKYYLRTYGCQANERDSETLAGILESMQFTPCSEPSEADVILLNTCAIRKNAEDKVLGEL 103 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-E 141 G ++ LK+ + DL+ V GC+AQ E +L + V ++ G +RLPELL E Sbjct: 104 GSLKRLKSDK----PDLIFAVCGCMAQEEEIVTLLLEKYRHVQLIFGTHNIHRLPELLYE 159 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 GKRVV+ + E L + G ++ A++ I GCDKFCT+C+VPYTRG Sbjct: 160 VMSEGKRVVEVLSKEGEVIENLPVRRFGKHK-----AWVNIMYGCDKFCTYCIVPYTRGK 214 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR++ ++DE R L + G E+TLLGQNVN++ + G+ G F+ LL ++I G+ Sbjct: 215 ERSRAMEDILDEVRILKEEGYKEVTLLGQNVNSYGKDAGIVG---GFASLLEETAKI-GI 270 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP D +D +I D +MP++HLPVQSG ILK M RR+T +Y + Sbjct: 271 ERIRFTTSHPWDFTDEMIDVIARYDNIMPFIHLPVQSGDSEILKIMGRRYTREQYLTLFH 330 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +I+ P+ AIS+D I+GFP E+++ F T+ LVD+ + AF+F YSPR GTP + M + Sbjct: 331 KIKERMPNCAISTDIIIGFPNESEEQFENTLSLVDECQFDNAFTFIYSPREGTPAARMAD 390 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVV 439 V VK RL L ++ + NDA +G+ + VL++ K+ +++ G + + V Sbjct: 391 NVSLEVKQHRLARLNERWNQYAKLKNDAYLGKTVRVLVDGASKKNDQIMSGYTETNKLVN 450 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGE 466 +K+ GDI+ V+IT K +L GE Sbjct: 451 FVAKDAKAGDIVTVKITGCKTFSLDGE 477 >gi|256832276|ref|YP_003161003.1| RNA modification enzyme, MiaB family [Jonesia denitrificans DSM 20603] gi|256685807|gb|ACV08700.1| RNA modification enzyme, MiaB family [Jonesia denitrificans DSM 20603] Length = 534 Score = 295 bits (756), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 168/423 (39%), Positives = 261/423 (61%), Gaps = 30/423 (7%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV----NSMDDADLIVLNTCHIREKAAEK 79 P+ + VK+ GCQMNV+DS M + GY + ++ DAD++V+NTC +RE AA K Sbjct: 15 PRTYTVKTLGCQMNVHDSEHMAGLLEQAGYVKAPDGSDATGDADIVVINTCAVRENAANK 74 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 +Y LG++ +K R K G + + V GC+AQ + I+ R+P V+VV G LP L Sbjct: 75 LYGQLGQLAAIK--RTKPG--MQIAVGGCLAQKDRGVIVERAPWVDVVFGTHNLDVLPVL 130 Query: 140 LERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTA-FLTIQEGCDKFCTFCVVPY 197 LERAR + V+ S++ L R+ V A +++I GC+ CTFC+VP+ Sbjct: 131 LERARHNEEAQVEIAESLQVFPSTLP------TRRESVYAGWVSISVGCNNTCTFCIVPH 184 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSE 256 RG E R Q++ E L+ G E+TLLGQNVN++ G++ G++ F+ LL + + Sbjct: 185 LRGKERDRRPGQILAEVEALVAAGAVEVTLLGQNVNSY---GVEFGDRGAFAKLLRACGD 241 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I+GL R+R+T+ HP +D +I+A +MP LH+P+QSGSDRIL++M R + + ++ Sbjct: 242 IEGLERVRFTSPHPAAFTDDVIEAMAQTPNVMPSLHMPLQSGSDRILRAMRRSYRSEKFL 301 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 I+DR+R+ PD AI++D IVGFPGET++DF+AT+D+V + +A AF+F+YSPR GTP + Sbjct: 302 GILDRVRTAMPDAAITTDIIVGFPGETEEDFQATLDVVRQSRFASAFTFQYSPRPGTPAA 361 Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLV 429 + Q+ + V + ERLL Q ++ + + A VG+ +EVL+ E G++ +L Sbjct: 362 TLDGQLPKEVVQERYERLLAAQDEISAAE---SQALVGRTVEVLVAESDGRKDDANHRLT 418 Query: 430 GRS 432 GR+ Sbjct: 419 GRA 421 >gi|291566663|dbj|BAI88935.1| tRNA-i(6)A37 modification enzyme MiaB [Arthrospira platensis NIES-39] Length = 452 Score = 295 bits (756), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 172/455 (37%), Positives = 272/455 (59%), Gaps = 23/455 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ + + ++GCQMN DS RM + G V + AD+++ NTC IR+ A +KVYS+ Sbjct: 5 PRHYHITTFGCQMNKADSERMAGILDEMGLTFVEDPNQADIVLYNTCTIRDNAEQKVYSY 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + R +E +L ++VAGCVAQ EGE +LRR P +++V+GPQ RL +LLE+ Sbjct: 65 LGR----QAKRKQENPNLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQV 120 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G +VV T E ++IV+ +R +TA++ + GC++ CT+CVVP RG Sbjct: 121 FEGSQVVAT--------EPINIVEDITKPRRDSNITAWVNVIYGCNERCTYCVVPNVRGT 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLS 255 E SR+ + E +L G E+TLLGQN++A+ G+ L G + T +DLLY + Sbjct: 173 EQSRTPEAIRAEMEELARAGYKEVTLLGQNIDAY-GRDLPGSTPDGRHQHTLTDLLYYVH 231 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 +I G+ R+R+ TSHPR ++ LI+A +L + + H+P QSG + +L++M R +T +Y Sbjct: 232 DIPGIERIRFATSHPRYFTERLIRACAELPKVCEHFHIPFQSGDNDVLRAMARGYTHEKY 291 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 R+II+ IR PD +IS+D IVGFPGET+ F T+ LVD I + + YSPR GT Sbjct: 292 RRIINTIREYIPDASISADAIVGFPGETEAQFENTLKLVDDIAFDLLNTAAYSPRPGTGA 351 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPW 434 + Q+ E VKA+RL L + + + + ++ +I EVL+E + K+ +++GR+ Sbjct: 352 ALWENQLSEEVKADRLQRLNRLVNVKAMERSERYRDRIEEVLVEGTNPKDPSQVMGRTRG 411 Query: 435 LQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468 + + G+++KV+I +V+ +L GE + Sbjct: 412 NRLTFFKGNLAELSGELVKVKIIEVRAFSLTGEPI 446 >gi|313893403|ref|ZP_07826975.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral taxon 158 str. F0412] gi|313442044|gb|EFR60464.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral taxon 158 str. F0412] Length = 438 Score = 295 bits (756), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 164/449 (36%), Positives = 258/449 (57%), Gaps = 21/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++ +YGCQMN DS R+ S GY ++ ADLI+LNTC +RE A KVY + Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYTPTEDVETADLILLNTCAVRENAETKVYGRI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G + LK ++ +L++ V GC+AQ E+ +R+P +++V+G + E++E + Sbjct: 62 GELMRLK----RKNKNLILAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQ 117 Query: 145 FGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G VD D +V + E + +G + A++ I GC+KFCT+C+VP+ RG Sbjct: 118 RGHTHQISVDMDNTVLPELE--AKPNGTF------YAWVPIMNGCNKFCTYCIVPHVRGR 169 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGL 260 EISR + +V E L G EITLLGQNVN++ GLD + T F L+ +L I G+ Sbjct: 170 EISRPVEAIVKEVTDLGAKGFKEITLLGQNVNSY---GLDFKDGTDFGTLIDALDGIPGI 226 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RY TSHP+DM+ +I A G ++ +LHLP+QSGSDRILK MNR +T Y++++ Sbjct: 227 ERIRYMTSHPQDMTKSMIDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLS 286 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R ++ +++D IVGFPGET++DF+AT+ L+ + Y A++F YS R GTP + M + Sbjct: 287 YCREKIKNVVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDD 346 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439 Q+ E VK RL L E N GQ+ ++++E +++ GR+ + V+ Sbjct: 347 QIPEEVKRVRLQTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVL 406 Query: 440 LNSKNH-NIGDIIKVRITDVKISTLYGEL 467 + +IG+ + I + YG + Sbjct: 407 FPKDDSLSIGETVPAYIDKAQTWVCYGTI 435 >gi|260910435|ref|ZP_05917107.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon 472 str. F0295] gi|260635511|gb|EEX53529.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon 472 str. F0295] Length = 440 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 163/451 (36%), Positives = 261/451 (57%), Gaps = 20/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GYE +AD I +NTC +RE A K+Y+ L Sbjct: 2 KKLYIETYGCQMNVADSEVVAAVMQMAGYEMCQDEAEADAIFMNTCSVRENAENKIYNRL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ K+G +++ V GC+A+ ++++ +V GP +Y LP+++ +A Sbjct: 62 DTL----HAEQKKGRKVILGVLGCMAERVKDDLIENHH-AQLVAGPDSYLNLPDMIAQAE 116 Query: 145 FGKRVVDTDYSVEDKF-----ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G + +D S + + +R+++ ++ F++I GCD FC +C+VPYTR Sbjct: 117 AGNKAIDIALSKTETYKDIVPQRVALAK--------ISGFVSIMRGCDNFCHYCIVPYTR 168 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR + +++E R L G E+TLLGQNVN++R +G+ F LL ++E Sbjct: 169 GRERSRDVDSILNEVRNLQQQGYKEVTLLGQNVNSYRFVNDEGQTVDFPQLLRLVAEAVP 228 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +R+R++T HP+DMSD ++ ++ + ++HLP+QSGSD++LK MNR++T Y + Sbjct: 229 TMRIRFSTPHPKDMSDATLRVIAEVPNVCRHIHLPIQSGSDKVLKLMNRKYTVEWYLSRV 288 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 IR + PD +S+D VG+ GET+ D ++ ++ ++GY AF FKYS R GT S L Sbjct: 289 KAIRELVPDCGLSTDIFVGYHGETEADHEESLRIMREVGYDSAFMFKYSERPGTYASKHL 348 Query: 380 -EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 + V E+VK RL L E N A VG I EVL+E K + +L GR+ + Sbjct: 349 PDDVPEDVKIRRLNELIMVQNENSARANHAEVGNIREVLVEGPSKRSREQLCGRTEQNKM 408 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + NH+IG+ +KVRIT +TL GE V Sbjct: 409 VVFDKGNHHIGEYVKVRITGSTSATLLGEAV 439 >gi|153213858|ref|ZP_01949064.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae 1587] gi|124115692|gb|EAY34512.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio cholerae 1587] Length = 375 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 155/346 (44%), Positives = 223/346 (64%), Gaps = 7/346 (2%) Query: 125 NVVVGPQTYYRLPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183 +V+ GPQT +RLPE++++++ V+D + +KF+RL R G TAF++I Sbjct: 1 DVIFGPQTLHRLPEMIKQSQTSDAPVMDISFPEIEKFDRLP-----EPRAEGPTAFVSIM 55 Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243 EGC K+CT+CVVPYTRG E+SR + V+ E +L + GV E+ LLGQNVNA+RG DG Sbjct: 56 EGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGG 115 Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 C+F++LL ++ I G+ R+R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL Sbjct: 116 ICSFAELLRLVATIDGIDRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRIL 175 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 M R HTA EY+ II ++R RPDI ISSDFIVGFPGETD DF+ TM L+ + + +F Sbjct: 176 TMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSF 235 Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 SF +SPR GTP ++ + E VK ERL LQ+++ Q + ++ +G +L+E K Sbjct: 236 SFIFSPRPGTPAADYPCDLSEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSK 295 Query: 424 EK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +L GR+ + V IG + V+I DV ++L GEL+ Sbjct: 296 KDLMELRGRTENNRVVNFEGSPDLIGQFVDVKIVDVFPNSLRGELL 341 >gi|325831353|ref|ZP_08164607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1] gi|325486607|gb|EGC89055.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1] Length = 459 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 172/459 (37%), Positives = 265/459 (57%), Gaps = 35/459 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F ++++GCQMN +DS R+ M G +V++++DAD++ TC +RE A ++Y G+ Sbjct: 10 FCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADIVAFMTCCVREAADTRLY---GQ 66 Query: 87 IRNLKNSRIKEGGDL---LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + +LKN ++ G L +V V GC+ Q +GE+++ ++VV G LP LLE A Sbjct: 67 VASLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAA 126 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYN--------RKRGVTAFLTIQEGCDKFCTFCVV 195 +E+ ++ ++D + R+ A+L I GC+ FC++C+V Sbjct: 127 ------------LEEGGHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIV 174 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PY RG E SR L +V EA + + GV EITLLGQNVN++ G+ L G F+ +L +L Sbjct: 175 PYVRGREKSRPLEDIVAEAERYVAAGVKEITLLGQNVNSY-GRDLYGSP-RFAQVLDALD 232 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + G+ RLR+ TSHP+D++D ++ L LMP LHLPVQSGSD +L +MNRR+T Y Sbjct: 233 QT-GIERLRFATSHPKDLNDEVVGRFATLRSLMPALHLPVQSGSDAVLAAMNRRYTRDHY 291 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 R ++ ++R PDIA+S+D IVGFPGET DF T LVD++GY Q F+F YS R GTP Sbjct: 292 RALVAKLRDDVPDIALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPA 351 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPW 434 ++M + V +R L ++++ N +G ++VL+E K +L+ G+SP Sbjct: 352 ASMDDDTPREVIQQRFDRLVDLVQQRAFEANQRDLGSTVDVLVEGASKRDERLLAGKSPK 411 Query: 435 LQSVVLNSK-----NHNIGDIIKVRITDVKISTLYGELV 468 Q+V + G ++VR+ + K L GE+V Sbjct: 412 NQTVHAPAPAGVRAEDLAGSTVRVRVDEAKTWYLAGEIV 450 >gi|260578888|ref|ZP_05846793.1| tRNA-I(6)A37 thiotransferase [Corynebacterium jeikeium ATCC 43734] gi|258602978|gb|EEW16250.1| tRNA-I(6)A37 thiotransferase [Corynebacterium jeikeium ATCC 43734] Length = 512 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 158/443 (35%), Positives = 262/443 (59%), Gaps = 22/443 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + GY + D++V NTC +RE A +++Y LG+ Sbjct: 19 YEVRTFGCQMNVHDSERLSGLLEDSGYVPASEGVTPDVVVFNTCAVRENADKRLYGTLGQ 78 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 ++ +K+ E + + V GC+AQ + + ++ ++P V+VV G LP LLER+ Sbjct: 79 MKAIKD----EHPGMQIAVGGCMAQKDKQTVVDKAPWVDVVFGTHNLGSLPTLLERSAHN 134 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + + D E V R+ ++++ GC+ CTFC+VP RG E R Sbjct: 135 HKA---EVEIFDALEEFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRR 190 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +++ E + L++ GV E+TLLGQNVNA+ + L+ ++ FS LL + EI+GL R Sbjct: 191 PGEILAEVKALVEQGVSEVTLLGQNVNAYGVNFADETLERDRTAFSKLLRACGEIEGLER 250 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+T+ HP + +D +I A + + P LH+P+QSGS ++LK M R + + ++ I+D++ Sbjct: 251 LRFTSPHPAEFTDDVIDAMAETPAVCPQLHMPLQSGSGKVLKDMKRSYRSKKFLAILDKV 310 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P AI++D IVGFPGET++DF+AT+D+V+K ++ AF+F+YSPR GTP + M QV Sbjct: 311 RERIPHAAITTDIIVGFPGETEEDFQATLDVVEKARFSSAFTFQYSPRPGTPAAEMENQV 370 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 + V + ERLL LQ+++ E++ N +G E+L++ G++ + RS + Sbjct: 371 PKAVVQDRYERLLALQERISEEE---NRKLIGTTQELLVQADGRKNDRTQRRSGRSRDGR 427 Query: 440 L----NSKNHNIGDIIKVRITDV 458 L + GD+++V ITD Sbjct: 428 LVHFTPEGDVRAGDVVEVVITDA 450 >gi|145593989|ref|YP_001158286.1| RNA modification protein [Salinispora tropica CNB-440] gi|229890661|sp|A4X4V8|MIAB_SALTO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|145303326|gb|ABP53908.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salinispora tropica CNB-440] Length = 499 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 162/417 (38%), Positives = 250/417 (59%), Gaps = 21/417 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-DLIVLNTCHIREKAAEKVYS 82 P+ + V++YGCQMNV+DS R+ + GY R + DD D++V NTC +RE A ++Y Sbjct: 9 PRTYQVRTYGCQMNVHDSERIAGLLEQAGYLRAGAADDTPDVVVFNTCAVRENADNRLYG 68 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LG++R K+ + ++ + V GC+AQ + EI+RR+P V+VV G LP LLER Sbjct: 69 NLGQLRPRKD----QHPEMQIAVGGCLAQKDRSEIVRRAPWVDVVFGTHNIGSLPVLLER 124 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRG 200 AR + VE E L + +R T +++I GC+ CTFC+VP RG Sbjct: 125 ARH-----NAAAEVE-ILESLEVFPSTLPTRRESTYAGWVSISVGCNNTCTFCIVPALRG 178 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259 E R +++ E R L+D GV E+TLLGQNVN++ G++ G++ F LL + +I G Sbjct: 179 KEKDRRPGEILSEVRSLVDEGVLEVTLLGQNVNSY---GIEFGDRYAFGKLLRACGDIDG 235 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+T+ HP+D +D +I A + + P LH+P+QSGSD +L++M R + + Y II Sbjct: 236 LERVRFTSPHPKDFTDDVIAAMAETPNVCPSLHMPLQSGSDDMLRAMRRSYRSERYLGII 295 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +++R+ PD AI++D IVGFPGET+ DF T+D+V ++ AF+F+YS R GTP + M Sbjct: 296 EKVRAAMPDAAITTDIIVGFPGETEADFERTLDVVRAARFSSAFTFQYSKRPGTPAATMA 355 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432 +Q+ + V ER L + E + N +G+ +EVL+ + + G+L GR+ Sbjct: 356 DQLPKAVVQERYERLIDCVEEITWAENRRLLGKTVEVLVAVGEGRKDERTGRLSGRA 412 >gi|126434730|ref|YP_001070421.1| RNA modification protein [Mycobacterium sp. JLS] gi|229890567|sp|A3PYF3|MIAB_MYCSJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|126234530|gb|ABN97930.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Mycobacterium sp. JLS] Length = 526 Score = 295 bits (756), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 165/435 (37%), Positives = 253/435 (58%), Gaps = 38/435 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 V + + V++YGCQMNV+DS R+ + GY R DAD++V NTC +RE A K+Y Sbjct: 12 VARTYQVRTYGCQMNVHDSERLAGLLEDAGYRRAADGADADVVVFNTCAVRENADNKLYG 71 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L + K S + + + V GC+AQ + + +LRR+P V+VV G LP LLER Sbjct: 72 NLSHLAPRKRSEPQ----MQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLER 127 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 AR + V+ ++++ L R+ +++I GC+ CTFC+VP RG Sbjct: 128 ARHNRAAQVEIAEALQEFPSTLPAA-----RESAYAGWVSISVGCNNTCTFCIVPSLRGK 182 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------------WRGKGLDGEK 244 E+ R V+ E + L+D GV E+TLLGQNVNA W+ + Sbjct: 183 EVDRRPGDVLAEIQTLVDQGVLEVTLLGQNVNAYGVSFAADERLREDPRMWQ-SAPHRNR 241 Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 F++LL + I GL R+R+T+ HP + +D +I+A + + P LH+P+QSGSDRIL+ Sbjct: 242 GAFAELLRACGRIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPALHMPLQSGSDRILR 301 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 +M R + A +Y IIDR+R+ PD AI++D IVGFPGET++DF+AT+D+V ++ AF+ Sbjct: 302 AMRRSYRAEKYLGIIDRVRAAIPDAAITTDLIVGFPGETEEDFQATLDVVAASRFSSAFT 361 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 F+YS R GTP ++M Q+ + V +E RL+ LQ+++ ++ N A VG+ +E+L+ Sbjct: 362 FQYSKRPGTPAADMPGQLPKAVVSERYQRLIELQERISLEE---NQAQVGRTLELLVATG 418 Query: 422 GKEK----GKLVGRS 432 K +L GR+ Sbjct: 419 EGRKDAATARLSGRA 433 >gi|294675532|ref|YP_003576148.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella ruminicola 23] gi|294471893|gb|ADE81282.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella ruminicola 23] Length = 470 Score = 295 bits (756), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 168/453 (37%), Positives = 266/453 (58%), Gaps = 19/453 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GYE ++D+AD + LNTC +R+ A +K+Y L Sbjct: 28 KKLYIETYGCQMNVADSEVVASVMQMAGYETTETIDEADAVFLNTCSVRDNAEQKIYHRL 87 Query: 85 GRIRNLKNSRIK---EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + + R+K E +++ V GC+A+ ++L + ++V GP Y LP+L+ Sbjct: 88 EALDAERRRRLKSNPEAPKMILGVLGCMAERAQRDLLD-NHFADLVAGPDAYLSLPDLIA 146 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +A G + ++T+ S + ++ + G K G F++I GC+ FC +C+VPYTRG Sbjct: 147 QAELGHKAMNTELSTSETYKDVVPQRIGIGHKIG--GFVSIMRGCNNFCHYCIVPYTRGR 204 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR + ++ E R L D G E+TLLGQNVN+++ + D F LL ++E + Sbjct: 205 ERSRDVESILREVRDLRDKGFKEVTLLGQNVNSYKFEDTD-----FPTLLRRVAEEVPTM 259 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP+DMSD +K ++ + ++HLPVQSGSDRILK MNR++T Y + Sbjct: 260 RVRFTTSHPKDMSDETLKVIAEVPNVCKHIHLPVQSGSDRILKLMNRKYTREWYMDRVHA 319 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-E 380 IR + PD +S+D VG+ ET++D + ++DL+ ++GY AF FKYS R GT S L + Sbjct: 320 IRRIIPDCGLSTDIFVGYHSETEEDHQLSLDLMREVGYDSAFMFKYSERPGTYASKHLPD 379 Query: 381 QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQ 436 V E K R L+ LQ ++ Q N G+ +VL+E K + +L GR+ + Sbjct: 380 DVPEEEKIRRLNELIALQTEMSAIQ---NKKDEGKEFDVLVEGFSKRSREQLCGRTEQNK 436 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 VV + H+IG+ ++VRIT +TL GE +V Sbjct: 437 MVVFDKGTHHIGETVRVRITGSTSATLLGEAIV 469 >gi|301312074|ref|ZP_07217996.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 20_3] gi|300830176|gb|EFK60824.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 20_3] Length = 457 Score = 295 bits (756), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 169/450 (37%), Positives = 270/450 (60%), Gaps = 19/450 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD I +NTC +R+ A +K+Y L Sbjct: 19 RKLFIETYGCQMNVADSEVVASIMKMDGYSMTENIEEADAIFVNTCSVRDNAEQKIYGRL 78 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++LK + L+V V GC+A+ E+++ ++VVGP +Y LP L+ Sbjct: 79 QYFQSLKRKK----KSLIVGVLGCMAERVKEDLIHVHH-ADLVVGPDSYLDLPNLVGAVE 133 Query: 145 FGKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G++ ++ + S ++ ++ + + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 134 HGEKAINVELSTQETYKDVIPLKLPGVH----ISGFVSIMRGCNNFCTYCIVPYTRGRER 189 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +++E R + + G E+TLLGQNVN++ + +GE TF LL +++ +R+ Sbjct: 190 SRDIESILNEIRDMHEKGFKEVTLLGQNVNSYSFEK-EGETITFPILLDCVAKEVPDMRI 248 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP+DMSD ++ D + ++HLP QSGS RILK MNR++T Y I IR Sbjct: 249 RFTTSHPKDMSDDTLRVIAANDNICKFIHLPAQSGSSRILKVMNRKYTREWYLDRIAAIR 308 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382 + PD AIS+D GF ET++D++ T+ L+ ++GY AF FKYS R GT ++ LE V Sbjct: 309 RIVPDCAISTDLFCGFHSETEEDYQETLSLMREVGYDSAFLFKYSERPGTYAASHLEDNV 368 Query: 383 DENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 E K RL + LQ KL E+ N +G+ EVLIE K + +L GR+ + V Sbjct: 369 PEEEKVRRLQGMIDLQNKLSEES---NLRDIGKTFEVLIEGFSKRSREQLFGRTSQNKVV 425 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + KN+++G IKV+I +TL+GE V Sbjct: 426 IFDKKNYHVGQFIKVKIHKASSATLFGEPV 455 >gi|228475022|ref|ZP_04059750.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis SK119] gi|228271007|gb|EEK12395.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis SK119] Length = 514 Score = 295 bits (756), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 164/446 (36%), Positives = 265/446 (59%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ M + + Y+ + +++AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK +R + L+ V GC++Q E +IL+ V+++ G ++LPE+LE A Sbjct: 130 LKHLKKNR----PETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGSTKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++E R+L G EITLLGQNVN++ GK + SDLL +S+I + R+ Sbjct: 241 SRRPQDIIEEVRELAREGYKEITLLGQNVNSY-GKDIKDLDYGLSDLLEDISKI-DIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I+ ++P++HLPVQSG++ +LK M R+++ Y ++DRI+ Sbjct: 299 RFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P ET++ F T+ L D++ + A+++ YS R GTP + M + V Sbjct: 359 EAIPNVALTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442 VK +RL L KK+ + GQ++ VL E K++ L G + + V Sbjct: 419 TEVKKDRLQRLNKKVGQYSEKAMQNYEGQVVTVLCEGTSKKDETVLAGYTEKNKLVNFKG 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ V++ + K +L GE + Sbjct: 479 PREAIGQLVDVKVKEAKQYSLNGEFL 504 >gi|311898737|dbj|BAJ31145.1| putative isopentenyl-adenosine A37 tRNA methylthiolase [Kitasatospora setae KM-6054] Length = 496 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 175/451 (38%), Positives = 258/451 (57%), Gaps = 26/451 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V +YGCQMNV+DS R+ + GY + D DL+V NTC +RE A K+Y LGR Sbjct: 8 YKVVTYGCQMNVHDSERLSGLLEQAGYAKAVGDGDPDLVVFNTCAVRENADNKLYGNLGR 67 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + K + + + V GC+AQ + E I+R++P V+VV G LP LLERA Sbjct: 68 LAPAKQANR----GMQIAVGGCLAQKDRETIVRKAPWVDVVFGTHNIGHLPALLERA--- 120 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V+ + VE E L +R A++ I GC+ CTFC+VP RG E Sbjct: 121 --AVEREAQVE-ILESLETFPSTLPARRESAYAAWVAISVGCNNTCTFCIVPALRGKEED 177 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ E L+ GV E+TLLGQNVNA+ G L G++ F LL + +++GL R+R Sbjct: 178 RRPGDILAEVEALVAEGVVEVTLLGQNVNAY-GSDL-GDREAFGKLLRACGQVEGLERVR 235 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HPRD +D +I A + M LH+P+QSGSDRILK+M R + + II+++R+ Sbjct: 236 FTSPHPRDFTDDVIAAMAETPNAMHQLHMPLQSGSDRILKAMRRSYRQERFLGIIEKVRA 295 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD AIS+D IVGFPGE+D+DF T+ +V + +A AF+F+YS R GTP + M +Q+ + Sbjct: 296 AMPDAAISTDIIVGFPGESDEDFEQTLHVVREARFANAFTFQYSKRPGTPAAEMDDQIPK 355 Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRSPWLQS 437 V + ERL+ LQ+++ ++ N VG+ +EVL+ E GK+ +L GR+P + Sbjct: 356 AVVQERYERLVALQEEISWEE---NKKQVGRRLEVLVAEGEGKKDDRTDRLSGRAPDNRL 412 Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 V + GD++ V I+ L E Sbjct: 413 VHFTRPEGGVRPGDMVTVEISYAAPHHLLAE 443 >gi|83596005|gb|ABC25364.1| tRNA-i(6)A37 thiotransferase enzyme [uncultured marine bacterium Ant29B7] Length = 484 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 178/462 (38%), Positives = 269/462 (58%), Gaps = 28/462 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + +GYE + +ADLI+LNTC IR+KA + V + L Sbjct: 29 KKLYLESYGCQMNFSDSEIVVSILDKEGYETTSDPKEADLILLNTCSIRDKAEQTVRNRL 88 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K +E D+ + + GC+A+ ++L +V++VVGP Y LP+L++ Sbjct: 89 KHFKRIK----RENKDMKIGILGCMAERVKAKLLEEEQLVDLVVGPDAYRDLPQLMKELD 144 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 GK+ ++ S ++ + + V G N GVTAF++I GCD C+FCVVP+TRG E S Sbjct: 145 GGKKAINVLLSKDETYHDIEPVRLGGN---GVTAFVSITRGCDNMCSFCVVPFTRGRERS 201 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEKCT---FSDLL 251 R+ +V E +KL +G E+TLLGQNV++ W G GL D K + FS LL Sbjct: 202 RNPQTIVVECQKLWADGYKEVTLLGQNVDSYLWYGGGLKKDFKVASDMAKASALQFSHLL 261 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 + ++ +R+R+ TS+P+DMSD +++A + + Y+HLPVQSGS RILK+MNR H Sbjct: 262 HMVANALPEIRIRFATSNPQDMSDDVLRAIAEHKNICKYIHLPVQSGSSRILKAMNRGHD 321 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 +Y +IDR++ + P+ AIS D + GFP ET++D T+ L+ ++ Y + F YS R Sbjct: 322 RADYIDLIDRVKRIIPNCAISQDIMSGFPTETEEDHNETLSLMSQVRYNFGYMFAYSERP 381 Query: 372 GTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSF---NDACVGQIIEVLIEKHGKEKGK 427 T + LE V VK R LQ+ + QQV N A VGQ++EVLIE + K K Sbjct: 382 NTMAARKLEDDVPLAVKKRR---LQEIIDLQQVHSAERNAANVGQVVEVLIEGYSKRSDK 438 Query: 428 LV-GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V GR+ V K+H GD++ V I +TL G+ + Sbjct: 439 DVFGRTSQNAVAVFPKKHHLPGDLVSVLIRSSTAATLLGDSI 480 >gi|317486846|ref|ZP_07945659.1| MiaB family RNA modification enzyme [Bilophila wadsworthia 3_1_6] gi|316921901|gb|EFV43174.1| MiaB family RNA modification enzyme [Bilophila wadsworthia 3_1_6] Length = 453 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 176/455 (38%), Positives = 257/455 (56%), Gaps = 23/455 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + ++GCQMNV DS + +G+ + ++ A++++LNTC +R+K +KVY+ LGR Sbjct: 6 FHIITFGCQMNVNDSFWLARSLQRRGFVE-SPLEKAEVVILNTCSVRDKPEQKVYAALGR 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 I+ + R+ VVAGCVAQ G R P V +VVG P+ +ER Sbjct: 65 IK-YETRRVPGS---FAVVAGCVAQQIGAGFFERFPQVRLVVGGDGLAMAPDAIERLHGD 120 Query: 147 K--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 R+ TD+S E ER + + AF+ I +GCD FCT+C+VP+TRG + S Sbjct: 121 PSLRLNLTDFS-EIYPERDPALPAQGEGEIPPVAFVNIMQGCDNFCTYCIVPFTRGRQKS 179 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLV 261 R ++DE R LIDNG EITLLGQNVN++ GLD +F+ LL +SE+ GL Sbjct: 180 RDAGAILDECRALIDNGAKEITLLGQNVNSY---GLDKHASGDTSFARLLRKVSELPGLA 236 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR+ T HP+D+S +I G++ L P LHLP+Q+GSDR+L MNR++ Y +++ Sbjct: 237 RLRFVTPHPKDLSPEVIAMFGEVPNLCPRLHLPLQAGSDRVLARMNRKYDMARYMTLVEG 296 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDIA+S+D IVGFPGET++ F+ T+D V + + +FSF YS R GT S ++ Sbjct: 297 LRAARPDIALSTDLIVGFPGETEEQFQETLDAVRAVNFMSSFSFCYSDRPGTAASRHTDK 356 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-------KLVGRSPW 434 V+ K RL LQ + + A VG ++L+E +++ GR PW Sbjct: 357 VEPAEKLRRLERLQALQEDLSSDWLKARVGCKTDILLEGASRKQDGEDAATESWQGRDPW 416 Query: 435 LQS--VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 + V L + G I+ V I K +L GEL Sbjct: 417 GDAVNVSLPAGIGKAGLIVPVTIVTAKKHSLIGEL 451 >gi|150009019|ref|YP_001303762.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Parabacteroides distasonis ATCC 8503] gi|255014851|ref|ZP_05286977.1| putative tRNA-i(6)A37 modification enzyme MiaB [Bacteroides sp. 2_1_7] gi|262383912|ref|ZP_06077048.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_33B] gi|298375748|ref|ZP_06985704.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_19] gi|229890584|sp|A6LEM6|MIAB_PARD8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|149937443|gb|ABR44140.1| conserved hypothetical protein, putative tRNA-i(6)A37 modification enzyme MiaB [Parabacteroides distasonis ATCC 8503] gi|262294810|gb|EEY82742.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_33B] gi|298266785|gb|EFI08442.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_19] Length = 457 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 169/450 (37%), Positives = 271/450 (60%), Gaps = 19/450 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD I +NTC +R+ A +K+Y L Sbjct: 19 RKLFIETYGCQMNVADSEVVASIMKMDGYSMTENIEEADAIFVNTCSVRDNAEQKIYGRL 78 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++LK ++ L+V V GC+A+ E+++ ++VVGP +Y LP L+ Sbjct: 79 QYFQSLK----RKKKSLIVGVLGCMAERVKEDLIHVHH-ADLVVGPDSYLDLPNLVGAVE 133 Query: 145 FGKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G++ ++ + S ++ ++ + + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 134 HGEKAINVELSTQETYKDVIPLKLPGVH----ISGFVSIMRGCNNFCTYCIVPYTRGRER 189 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +++E R + + G E+TLLGQNVN++ + +GE TF LL +++ +R+ Sbjct: 190 SRDIESILNEIRDMHEKGFKEVTLLGQNVNSYSFEK-EGETITFPILLDRVAKEVPDMRI 248 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP+DMSD ++ D + ++HLP QSGS RILK MNR++T Y I IR Sbjct: 249 RFTTSHPKDMSDDTLRVIAANDNICKFIHLPAQSGSSRILKVMNRKYTREWYLDRIAAIR 308 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382 + PD AIS+D GF ET++D++ T+ L+ ++GY AF FKYS R GT ++ LE V Sbjct: 309 RIVPDCAISTDLFCGFHSETEEDYQETLSLMREVGYDSAFLFKYSERPGTYAASHLEDNV 368 Query: 383 DENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 E K RL + LQ KL E+ N +G+ EVLIE K + +L GR+ + V Sbjct: 369 PEEEKVRRLQGMIDLQNKLSEES---NLRDIGKTFEVLIEGFSKRSREQLFGRTSQNKVV 425 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + KN+++G IKV+I +TL+GE V Sbjct: 426 IFDKKNYHVGQFIKVKIHKASSATLFGEPV 455 >gi|223986392|ref|ZP_03636398.1| hypothetical protein HOLDEFILI_03710 [Holdemania filiformis DSM 12042] gi|223961634|gb|EEF66140.1| hypothetical protein HOLDEFILI_03710 [Holdemania filiformis DSM 12042] Length = 484 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 174/450 (38%), Positives = 261/450 (58%), Gaps = 16/450 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 V +R+++ +YGCQ N DS + + + G+ + DADLI+LNTC +R+ A +KV Sbjct: 39 VGRRYYIHTYGCQANERDSETIAGILEAMGFTAAPAETDADLILLNTCAVRKNAEDKVIG 98 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140 LG ++ +K +E DL+ V GC+AQ E + IL++ V+++ G +RLP+LL Sbjct: 99 QLGALKRMK----RENPDLIFAVCGCMAQEEDIVDLILKKYHQVDLIFGTHNLHRLPQLL 154 Query: 141 ERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 +A +R V+ + E L + G ++ A++ I GCDKFCT+C+VPYTR Sbjct: 155 TQAMLSHERTVEIFSKEGEVIENLPVRRFGKHK-----AWVNIMYGCDKFCTYCIVPYTR 209 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR V+ E R+L G EITLLGQNVNA+ G F+ LL +EI G Sbjct: 210 GKERSRDPEDVLAEVRELKAQGYKEITLLGQNVNAYGKNRASG--YGFAQLLRDTAEI-G 266 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+TTSHP D +D +I D +MP +HLPVQSGS +LK M RR+T EY + Sbjct: 267 VERVRFTTSHPWDFTDEMIDVIASYDNIMPAIHLPVQSGSSEMLKIMGRRYTREEYLTLF 326 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +I+ P + ++D IVGFP ET++ F T+ LVD+ Y AF+F YSPR GTP + M Sbjct: 327 HKIKDRIPGCSFTTDIIVGFPNETEEQFEMTLSLVDECQYDGAFTFIYSPREGTPAARMQ 386 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSV 438 + V VK+ RL L +K+ N+ G+I+ VL++ K+ ++ G S + V Sbjct: 387 DNVPAEVKSRRLQQLNEKIAFYAHRNNEPYRGRIVTVLVDGPSKKNDQVYSGYSETNKLV 446 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +++ GD+++VRIT++ +L GE V Sbjct: 447 NFTAEHAEPGDLVQVRITEIHSWSLNGEKV 476 >gi|206890169|ref|YP_002248877.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermodesulfovibrio yellowstonii DSM 11347] gi|229891018|sp|B5YKW2|MIAB_THEYD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|206742107|gb|ACI21164.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermodesulfovibrio yellowstonii DSM 11347] Length = 431 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 167/445 (37%), Positives = 269/445 (60%), Gaps = 26/445 (5%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 ++K++GCQMN +DS RM + ++G+ V+ AD+++ NTC IR KA +K +S LGR+ Sbjct: 7 YIKTFGCQMNEHDSERMLGILGTKGFIEVDEPKKADIVIFNTCAIRHKAEQKFFSSLGRV 66 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 ++LK K+ L ++VAGC AQ +GE++L + P ++ ++GP + + ++E + Sbjct: 67 KHLK----KKNPQLKIIVAGCSAQLQGEKLLNKLPYIDYIIGPDNLHVIENIIENQVSHR 122 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D + V + ++ RK V A++ I GC+ +CT+CVVPYTRG E SR + Sbjct: 123 IFTDENPEVAN-------INLPVKRKDCVKAWVNIIYGCNNYCTYCVVPYTRGKERSRPV 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++ E L + G E+TLLGQNVN+++ DG F LL + +I+G+ R+R+ T Sbjct: 176 DDIIKEISLLAEQGYKEVTLLGQNVNSYK----DG-NTNFPLLLEKVEKIEGIKRIRFIT 230 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 SHP+D+S L+ D + ++HLP+Q+GS++ILK MNR++T EY + I +R P Sbjct: 231 SHPKDLSKELVDVMKDYKKICEHIHLPLQAGSNKILKLMNRKYTYEEYFEKICWLREAIP 290 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 DIAI+SD IVGFP E +DF T++ + +I + F+FK+SPRLGT + + + E VK Sbjct: 291 DIAITSDIIVGFPQEQHEDFEKTINALKEIRFDGIFAFKFSPRLGTAAAKLDGHISEEVK 350 Query: 388 AERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443 A RL L LQ ++ E++ N G+I EVL+E GK E+G G++ + V + S Sbjct: 351 AARLIEVLKLQDEITERK---NKRLEGKIQEVLVE--GKDEEGFTTGKTRTNKVVKIYS- 404 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 + G+I+ V+I +L G+++ Sbjct: 405 DIKAGEIVNVKIAKTHRHSLEGDII 429 >gi|119960909|ref|YP_947362.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arthrobacter aurescens TC1] gi|229890443|sp|A1R550|MIAB_ARTAT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|119947768|gb|ABM06679.1| tRNA-i(6)A37 thiotransferase [Arthrobacter aurescens TC1] Length = 515 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 167/449 (37%), Positives = 268/449 (59%), Gaps = 31/449 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ + V+++GCQMNV+DS RM + GY + + AD++V NTC +RE A K+Y Sbjct: 24 PKTYQVRTFGCQMNVHDSERMAGLLEEAGYVPADG-EVADVVVFNTCAVRENADNKLYGN 82 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG++R +K + + + V GC+AQ + E I++++P V+ V G LP LL RA Sbjct: 83 LGQLRQVKEANPG----MQIAVGGCLAQKDRETIVKKAPWVDAVFGTHNVGALPALLNRA 138 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201 R + + + E L + KR +++I GC+ CTFC+VP RG Sbjct: 139 RH------NNEAQLEILESLDVFPSTLPTKRDSVYAGWVSISVGCNNTCTFCIVPSLRGK 192 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 E R +++ E + L+D+G E+TLLGQNVN++ G++ G++ FS LL + EI+GL Sbjct: 193 EKDRRPGEILAEIQALVDDGAVEVTLLGQNVNSY---GVEFGDRQAFSKLLRACGEIEGL 249 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP +D +I A + MP LH+P+QSGSD++LK M R + + ++ I+D Sbjct: 250 ERVRFTSPHPAAFTDDVIDAMAETHNAMPQLHMPLQSGSDKVLKDMRRSYRSSKFLGILD 309 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R P AI++D IVGFPGET++DF+AT+D+V+K +A AF+F+YS R GTP +++ E Sbjct: 310 KVRDRIPHAAITTDIIVGFPGETEEDFQATLDVVEKSRFASAFTFQYSKRPGTPAADLPE 369 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSP 433 Q+ + V + ERL LQ ++ ++ N +G+ +EVL+ + G++ G +L GRS Sbjct: 370 QLPKAVVQERYERLTALQDRIAAEE---NAKQLGRKVEVLVTAQSGRKAGETHRLSGRSK 426 Query: 434 WLQ----SVVLNSKNHNIGDIIKVRITDV 458 + SV ++ GD + V IT+ Sbjct: 427 DQRLVHFSVPAGAEAPRPGDFVTVTITEA 455 >gi|256828394|ref|YP_003157122.1| MiaB family RNA modification protein [Desulfomicrobium baculatum DSM 4028] gi|256577570|gb|ACU88706.1| RNA modification enzyme, MiaB family [Desulfomicrobium baculatum DSM 4028] Length = 444 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 175/447 (39%), Positives = 251/447 (56%), Gaps = 14/447 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF + ++GCQMNV D+ + S+G+ DA + V+ TC +REK +KVYS LG Sbjct: 2 RFHILTFGCQMNVADADWLTQSLVSRGWTEAGE-SDAQVFVVTTCSVREKPEQKVYSLLG 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R+++ + D+ V V GCVAQ GEE R P V +V G +P+ LER Sbjct: 61 RLKSYAD----RSPDVFVAVGGCVAQQIGEEFWNRFPFVRLVFGTDGTAMVPQALERLAN 116 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + D + +GG + + AF+ I +GCD FC +C+VP+TRG + SR Sbjct: 117 DPALRISLLDFLDHYPEREQPEGGTVQAQ---AFVNIMQGCDNFCAYCIVPFTRGRQKSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S VV E L+ G E+TLLGQNVN++ G+ G+ +F+ LL +S I GL+RL++ Sbjct: 174 SSDAVVAECEALVRRGARELTLLGQNVNSY-GQDKHGDGTSFASLLERISAIPGLMRLKF 232 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTSHP+D++ ++ A G L L P LHLPVQSGSD +LK+M R++T Y I +R V Sbjct: 233 TTSHPKDIAPEVVTAFGKLPNLCPQLHLPVQSGSDAVLKAMGRKYTRARYLDTIRELRRV 292 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P I +++D IVGFPGET DF T++L+ ++ Y +FSFKYS R G M +V E Sbjct: 293 CPQITLTTDIIVGFPGETLQDFEDTLELMREVRYESSFSFKYSDRPGVRAEKMDFKVPEE 352 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK----LVGRSPWLQSVVLN 441 K+ RL LQ+ V A VG + EVL+E K + GR + V + Sbjct: 353 EKSRRLAVLQEMQDRITVEELAAQVGSMAEVLVEGPSKMQDSEYIFWRGRDGGGRIVNFS 412 Query: 442 SKNHNI-GDIIKVRITDVKISTLYGEL 467 S + G +++VRI D K +L GE+ Sbjct: 413 SPIPCLTGRMVRVRIVDAKKHSLVGEI 439 >gi|237722101|ref|ZP_04552582.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|293371177|ref|ZP_06617713.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides ovatus SD CMC 3f] gi|299145161|ref|ZP_07038229.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_23] gi|229448970|gb|EEO54761.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292633738|gb|EFF52291.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides ovatus SD CMC 3f] gi|298515652|gb|EFI39533.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_23] Length = 457 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 165/449 (36%), Positives = 264/449 (58%), Gaps = 20/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD + +NTC IR+ A +K+ + L Sbjct: 20 KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK + L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 80 EFFHSLKKKKKH----LIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 189 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L+ G E+TLLGQNVN++R + GE TF LL +++E VR Sbjct: 190 RSRDVESILNEVADLVTKGYKEVTLLGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVR 249 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++T Y + I Sbjct: 250 IRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAI 309 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 + + PD +++D GF ET++D ++ L+++ GY AF FKYS R GT S LE Sbjct: 310 KRIIPDCGLTTDIFSGFHSETEEDHALSLSLMEECGYDAAFMFKYSERPGTYASKHLEDN 369 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N C+G+ EVL+E K + +L GR+ + Sbjct: 370 VPEEVKVRRLNEIIALQNRLSAES---NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRV 426 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466 VV + H +GD + VR+T+ +TL GE Sbjct: 427 VVFDRGTHRVGDFVNVRVTEASSATLKGE 455 >gi|260494842|ref|ZP_05814972.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_33] gi|260198004|gb|EEW95521.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_33] Length = 435 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 163/447 (36%), Positives = 266/447 (59%), Gaps = 16/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + +YGCQMNV +S +++ +F + GY+ +D+AD + LNTC +RE AA +++ L Sbjct: 2 KRASIITYGCQMNVNESAKIKKIFQNLGYDITEEIDNADAVFLNTCTVREGAATQIFGKL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++ LK R ++ V GC AQ +GEE++++ PI+++V+G Q R+P+ +E+ Sbjct: 62 GELKALKEKR-----GTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIE 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + ED+ + G ++ TA ++I GC+ FCTFC+VPY RG E S Sbjct: 117 NNESTHEVYTDNEDELPPRLDAEFGSDQ----TASISITYGCNNFCTFCIVPYVRGRERS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 L ++V + + + G EI LLGQNVN++ +G+ F+ LL + ++KG +R Sbjct: 173 VPLEEIVKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVKGDYIVR 230 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + + HPRD +D +I D + LHLP+QSGS +IL+ M R +T +Y ++D+I+S Sbjct: 231 FVSPHPRDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKS 290 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P +A+++D IVGFPGET++DF T+D+V K+ + ++ F YS R GT + M Q+DE Sbjct: 291 KIPGVALTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIDE 350 Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441 +VK ERL L + + + SFN++ +I+ VL+E K+ K L GR+ + V+ Sbjct: 351 SVKKERLQRLME--VQNKCSFNESSKYKDKIVRVLVEGPSKKNKEVLSGRTSTNKIVLFK 408 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 G + V+I + K TLYGE+V Sbjct: 409 GNIALKGQFVNVKINECKTWTLYGEIV 435 >gi|188995206|ref|YP_001929458.1| putative SAM/TRAM family methylase protein [Porphyromonas gingivalis ATCC 33277] gi|229890595|sp|B2RKG6|MIAB_PORG3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|188594886|dbj|BAG33861.1| putative SAM/TRAM family methylase protein [Porphyromonas gingivalis ATCC 33277] Length = 465 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 165/450 (36%), Positives = 268/450 (59%), Gaps = 16/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GY +++D+AD I++NTC +R+ A +KV + L Sbjct: 18 RKLYIETYGCQMNVADSEVVASVMQMDGYSLTDNVDEADTILVNTCSVRDNAEQKVLNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +L+ R + L++ V GC+A+ EE++R V+VV GP +Y LP L+ A Sbjct: 78 AYYHSLRKKR-RASSRLVIGVLGCMAERVKEELIREHH-VDVVAGPDSYLDLPNLVGAAE 135 Query: 145 FGKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G++ ++ + S+++ ++ + + GG + + F++I GC+ FC++C+VPYTRG E Sbjct: 136 QGEKAINVELSMQETYKDVMPLKMGGVH----INGFVSIMRGCNNFCSYCIVPYTRGRER 191 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +++E R L E+TLLGQNVN++R + +G F DLL +++E +R+ Sbjct: 192 SREIESILNEVRDLKAKNFREVTLLGQNVNSYRYEQ-NGRIIRFPDLLAAVAEAVPDMRI 250 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP+DM D I + ++HLP QSGSD++L+ M R +T Y + IR Sbjct: 251 RFTSPHPKDMDDEAIAVMARYRNICNHIHLPAQSGSDKMLRVMKRGYTRRWYLDRVAAIR 310 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQV 382 PD AISSD GF ET++DF AT+ L++++GY AF FKYS R GT ++++ V Sbjct: 311 RAIPDCAISSDLFCGFHSETEEDFEATLSLMEEVGYDSAFMFKYSERPGTYAARHLVDDV 370 Query: 383 DENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 E VK +R++ LQ +L E+ N + + EVLIE K + +L GR+ + V Sbjct: 371 LEEVKLARLDRMIALQNRLSEES---NKRDISKTFEVLIEGFSKRSREQLFGRTQQNKVV 427 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + H +G I VRI D +TL+GE+V Sbjct: 428 IFDKNGHRVGQYIYVRIKDASSATLFGEVV 457 >gi|295135976|ref|YP_003586652.1| tRNA-i(6)A37 modification enzyme MiaB [Zunongwangia profunda SM-A87] gi|294983991|gb|ADF54456.1| tRNA-i(6)A37 modification enzyme MiaB [Zunongwangia profunda SM-A87] Length = 481 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 173/459 (37%), Positives = 254/459 (55%), Gaps = 22/459 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGCQMN DS + + +GY +++ADL+++NTC IREKA + V L Sbjct: 24 RKLFIESYGCQMNFSDSEIVASILSKEGYNTTQQLEEADLVLVNTCSIREKAEQTVRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K RI ++ V V GC+A+ + L IV++VVGP Y LP L+ Sbjct: 84 EKYNAVK--RI--NPNMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLINEVE 139 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V+ S E+ + +S V N GV+AF++I GCD CTFCVVP+TRG E S Sbjct: 140 EGRNAVNVILSKEETYGDISPVRLQTN---GVSAFVSITRGCDNMCTFCVVPFTRGRERS 196 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGE-----------KCTFSDLL 251 R +++E L G EITLLGQNV++ W G GL + +F+ LL Sbjct: 197 RDPQSIIEEVNDLASRGYKEITLLGQNVDSYLWYGGGLKKDFKDATPMQKATATSFASLL 256 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++E + +R+R++TS+P+DM+ +I+ + Y+HLPVQSGSD++LK MNR HT Sbjct: 257 KMVAEAQPKMRIRFSTSNPQDMTLDVIEVMAAHRNICNYIHLPVQSGSDKMLKKMNRLHT 316 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY +ID I+ + PD IS D I GFP ET++D + T+ L+ + Y F F YS R Sbjct: 317 REEYFTLIDNIKKLIPDCGISHDIITGFPTETEEDHKDTLSLMQYVKYDFGFMFAYSERP 376 Query: 372 GTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLV 429 GT + E V E K RL + +E +G+ +EVLIEK K+ Sbjct: 377 GTMAARKFEDDVPEETKKRRLTEIVNLQQEHSKYRTQQFIGKTVEVLIEKSSKKSDAHWS 436 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 GR+ VV +N+ +GD + V+I D +TL GE + Sbjct: 437 GRNTQNTVVVFPKENYEVGDFVNVKINDCTSATLIGEPI 475 >gi|220912233|ref|YP_002487542.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arthrobacter chlorophenolicus A6] gi|219859111|gb|ACL39453.1| RNA modification enzyme, MiaB family [Arthrobacter chlorophenolicus A6] Length = 509 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 169/446 (37%), Positives = 263/446 (58%), Gaps = 31/446 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS RM M GY + D AD++V NTC +RE A K+Y LG Sbjct: 22 YQVRTFGCQMNVHDSERMAGMLEDAGYVPADG-DRADVVVFNTCAVRENADNKLYGNLGI 80 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + +K + + + V GC+AQ + E IL+++P V+ V G LP LLERAR Sbjct: 81 LAPVKAANPG----MQIAVGGCLAQKDRETILKKAPWVDAVFGTHNVGALPALLERARH- 135 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 D + + E L + KR +++I GC+ CTFC+VP RG E Sbjct: 136 -----NDEAQLEILESLDVFPSTLPTKRDSVYAGWVSISVGCNNTCTFCIVPALRGKEKD 190 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263 R ++ E + L+D+G E+TLLGQNVN++ G++ G++ FS LL + +I+GL R+ Sbjct: 191 RRPGDILAEVQALVDDGAIEVTLLGQNVNSY---GVEFGDRQAFSKLLRACGDIEGLERV 247 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP +D +I A + +MP LH+P+QSGSD ILK+M R + + ++ I+D++R Sbjct: 248 RFTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDGILKAMKRSYRSTKFLGILDKVR 307 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P AIS+D IVGFPGET++DF+AT+D+V+K +A AF+F+YS R GTP +++ +Q+ Sbjct: 308 DKIPHAAISTDIIVGFPGETEEDFQATLDVVEKSRFATAFTFQYSKRPGTPAADLPDQLP 367 Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPWLQ 436 + V + ERL LQ ++ ++ N +G+ +EV++ + +E +L GRS + Sbjct: 368 KAVVQERFERLTALQDRIAAEE---NKKQLGRRVEVMVTAQSGRKAEETHRLSGRSRDQR 424 Query: 437 ----SVVLNSKNHNIGDIIKVRITDV 458 SV + GD++ V ITD Sbjct: 425 LVHFSVPAGAPAPRPGDLVTVTITDA 450 >gi|169630131|ref|YP_001703780.1| putative tRNA-i(6)A37 modification enzyme MiaB [Mycobacterium abscessus ATCC 19977] gi|229890563|sp|B1MD05|MIAB_MYCA9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|169242098|emb|CAM63126.1| Putative tRNA-i(6)A37 modification enzyme MiaB [Mycobacterium abscessus] Length = 507 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 169/447 (37%), Positives = 260/447 (58%), Gaps = 29/447 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS R+ + + GY + DAD+++ NTC +RE A K+Y G Sbjct: 15 YQVRTYGCQMNVHDSERVSGLLDAAGYVKAPEGTDADIVIFNTCAVRENADNKLY---GN 71 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 I +L R ++ + V GC+AQ + E +L ++P V+VV G LP LLERAR Sbjct: 72 ISHLA-PRKAANPNMQIAVGGCLAQKDREGMLAKAPWVDVVFGTHNIGSLPALLERARHN 130 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V+ ++E L R+ A+++I GC+ CTFC+VP RG EI R Sbjct: 131 NEAQVEIVEALEHFPSALPAT-----RESAYAAWVSISVGCNNTCTFCIVPSLRGKEIDR 185 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLV 261 ++ E + L+D GV E+TLLGQNVNA+ D E + F++LL + I GL Sbjct: 186 RPGDILGEVQALVDQGVLEVTLLGQNVNAYGVNFADPEIPRDRGAFAELLRACGRIDGLE 245 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP + +D +I+A + P LH+P+QSGSDRILK+M R + + + IID+ Sbjct: 246 RVRFTSPHPAEFTDDVIEAMAQTPNVCPQLHMPLQSGSDRILKAMRRSYRSERFLSIIDK 305 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +RS PD AI++D IVGFPGET++DF+ T+++V + ++ AF+F+YS R GTP + + +Q Sbjct: 306 VRSAMPDAAITTDIIVGFPGETEEDFQQTLEVVRRARFSSAFTFQYSIRPGTPAAKLPDQ 365 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPW 434 + + V E RL+ LQ+ + ++ N +G++IEVLI + E ++ GR+ Sbjct: 366 LPKAVVQERYDRLIALQESVTLEE---NQKQIGRMIEVLIATGEGRKDGETARMSGRARD 422 Query: 435 LQSVVLNSKNH-----NIGDIIKVRIT 456 + V + H GDII V +T Sbjct: 423 GRLVHFRPQGHVDGALRPGDIITVDVT 449 >gi|38234029|ref|NP_939796.1| hypothetical protein DIP1448 [Corynebacterium diphtheriae NCTC 13129] gi|81564788|sp|Q6NGR0|MIAB_CORDI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|38200291|emb|CAE49976.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 516 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 155/449 (34%), Positives = 262/449 (58%), Gaps = 27/449 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F V+++GCQMNV+DS R+ + GY V ++ DL+V NTC +RE A +++Y LG+ Sbjct: 19 FEVRTFGCQMNVHDSERLSGLLEEAGYHAVADGEEPDLVVFNTCAVRENADKRLYGTLGQ 78 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R+ K + + + V GC+AQ + + ++ ++P V+ V G LP LL R+ Sbjct: 79 LRSAKEKNPR----MQIAVGGCLAQKDKDTVVAKAPWVDAVFGTHNMGALPSLLSRSEHN 134 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 KR + + D E+ V R+ ++++ GC+ CTFC+VP RG E+ R Sbjct: 135 KRA---EVEIVDSLEQFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEVDRR 190 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ++ E + L+D GV E+TLLGQNVNA+ + ++ FS LL + +I+GL R Sbjct: 191 PGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFSDPDIQRDRFAFSKLLRACGKIEGLER 250 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+T+ HP + + +I A + + P LH+P+QSGSD++LK M R + + ++ I++ + Sbjct: 251 LRFTSPHPAEFTHDVIDAMAETPNVCPQLHMPLQSGSDKVLKEMRRSYRSKKFLGILEEV 310 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P +I++D IVGFPGET++DF+ T+++V+K + A++F+YSPR GTP ++ +QV Sbjct: 311 RAKIPHASITTDIIVGFPGETEEDFQETLNVVEKARFTSAYTFQYSPRPGTPAADYADQV 370 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWL 435 + V + ERLL LQ+++ ++ N +G +E+L++ G K ++ GRS Sbjct: 371 PKEVVQDRYERLLALQERISTEE---NAKLIGTEVELLVQASGGRKNDKTQRMTGRSRDG 427 Query: 436 QSVVLNSKNH-----NIGDIIKVRITDVK 459 + V + + H GD+I +T+ K Sbjct: 428 RLVHFDPQGHVDGDIRPGDVITTVVTEAK 456 >gi|270284053|ref|ZP_05965469.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium gallicum DSM 20093] gi|270278006|gb|EFA23860.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium gallicum DSM 20093] Length = 479 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 162/406 (39%), Positives = 252/406 (62%), Gaps = 23/406 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81 F+V + GCQMNV+DS R+ + + GY E++++ D DLIVLNTC +RE AAE++Y Sbjct: 27 FYVHTLGCQMNVHDSERIAGVLEADGYVPATQEQMDAQD-VDLIVLNTCAVRENAAERMY 85 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 +G +K R +L + V GC+AQ + E I R++P V+ V G + LP LL+ Sbjct: 86 GTVGLWYRIKQER----PNLQIAVGGCMAQLDRERICRKAPWVSAVFGTKNIGDLPALLD 141 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + R + V D D +R ++ +++I GC+ CTFC+VP TRG Sbjct: 142 QNRL---TGEPQVKVNDNLTMFP-SDLPVDRASKISNWVSISVGCNNTCTFCIVPTTRGK 197 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E R V+ E ++ +DNG E+TLLGQNVN++ G G+ G++ FS LL + I+GL Sbjct: 198 EHDRRPGDVLAEVQRCVDNGAKEVTLLGQNVNSY-GYGI-GDRFAFSKLLRACGSIEGLE 255 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I A + +M LH P+QSGSDR+L++M R + ++ I+D+ Sbjct: 256 RVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRVLRAMRRSYRTSKFLTILDK 315 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ PD IS+D IVGFPGET++DF+AT+D+V++ +A AF+F YSPR GTP + M EQ Sbjct: 316 IRAAMPDAQISTDIIVGFPGETEEDFQATLDVVEQARFASAFTFIYSPRPGTPAAAM-EQ 374 Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 +D +V + ERL+ LQ+++ + ++ + G+ +EV+I G++ Sbjct: 375 IDHDVVQERFERLVALQERITAENLATFE---GRDVEVMITGSGRK 417 >gi|167753302|ref|ZP_02425429.1| hypothetical protein ALIPUT_01575 [Alistipes putredinis DSM 17216] gi|167659233|gb|EDS03363.1| hypothetical protein ALIPUT_01575 [Alistipes putredinis DSM 17216] Length = 458 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 173/449 (38%), Positives = 266/449 (59%), Gaps = 20/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FV++YGCQMNV D+ + + +GY + +++AD++++NTC IR+ A ++++ Sbjct: 17 RKLFVETYGCQMNVGDTEIVVAIMQQEGYVYTDKIEEADVVLINTCSIRDNAEQRIW--- 73 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R + + R + G LLV + GC+A+ E +L V++V GP Y LP L+ A Sbjct: 74 GRLREMAHLRRRRPG-LLVGIIGCMAERLRERLLEGENPVDIVAGPDAYRDLPRLVREAG 132 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G R V+ S E+ + ++ V N GV++++ I GC+ +C++CVVPYTRG+E S Sbjct: 133 EGGRGVNVLLSREETYAEIAPVRLDRN---GVSSYIAIMRGCNNYCSYCVVPYTRGVERS 189 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ EA L +NG E+TLLGQNVN++R +D F +L+ +SEI L+R+R Sbjct: 190 RDPQTILSEALCLFENGYREVTLLGQNVNSYRYGAVD-----FPELMRLVSEISPLLRVR 244 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+DMSD L++ + +HLP QSGS R+L+ MNR++T Y I IR Sbjct: 245 FATSHPKDMSDRLLEVMASKPNICRCIHLPAQSGSSRMLEKMNRKYTREWYLDRIAAIRR 304 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVD 383 PD AI++D I GF ETD+D R T+ L+ ++GY A+ FKYS R T +M + V Sbjct: 305 YMPDCAITTDLIAGFCSETDEDHRQTLSLMREVGYEFAYMFKYSERPDTFAQRHMPDDVP 364 Query: 384 ENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439 ++VK RL + LQ L + N VG+ E+L+E K + L GR+ + VV Sbjct: 365 DSVKTARLNEIIALQNTLSAES---NARDVGKEFEILVEGTSKRSDRQLFGRTSQNKVVV 421 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + IGD ++VR+T +TL GELV Sbjct: 422 FDRGECRIGDYVRVRVTASSSATLQGELV 450 >gi|258592142|emb|CBE68447.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 438 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 178/444 (40%), Positives = 254/444 (57%), Gaps = 21/444 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GCQ N DS R+ + ++GY ++ADLI+LNTC IREKA KVYS LG + L Sbjct: 8 TFGCQANDLDSERITGLLHNEGYTLTECEEEADLILLNTCAIREKAEHKVYSRLGSFQVL 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K R L + + GCVAQ EG+ +L R P ++ VVGP +P LL+ R V Sbjct: 68 KRER----AGLKIGICGCVAQQEGQVLLNRFPYLDFVVGPAQLTAIPSLLQTG--ATRSV 121 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 T + + VD R+ + A+++I EGCD FCTFCVVP+TRG E SR ++ Sbjct: 122 VTTRAPGYSYP----VDAPVQRQSNIRAWVSIMEGCDHFCTFCVVPFTRGRERSRPPQEI 177 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTTSH 269 V+E R L G E+TLLGQ VN++ G+ L +F +LL + + + +R+R+T+ H Sbjct: 178 VEEIRGLKRQGYREVTLLGQTVNSY-GRKLT-PPISFVELLRQIDQLVDSQMRVRFTSPH 235 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P D++D L A L L +HLPVQSGSDRIL M R HT EY + I +R+ P+I Sbjct: 236 PLDVTDELAAAIAALPSLCEQIHLPVQSGSDRILYQMKRGHTRDEYLKKIALLRARTPEI 295 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA- 388 AI++D IVGFPGET++DF+AT+DL+ ++G+ AF FKYSPR T M +Q+ E K Sbjct: 296 AITTDVIVGFPGETEEDFQATLDLMQEVGFDGAFMFKYSPRPHTEAERMPDQLSEEAKGR 355 Query: 389 --ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVLNSKN 444 E+ L L +L + N A +G+ +EVL+ + + + GR+ + V + Sbjct: 356 WLEQALALMNRL---SLERNRAYLGRTVEVLVNREDAKGNTDRHTGRTRQNKIVHFGGEG 412 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 G + V IT L GE+V Sbjct: 413 VVDGSFVSVAITGATPLYLQGEMV 436 >gi|317121910|ref|YP_004101913.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermaerobacter marianensis DSM 12885] gi|315591890|gb|ADU51186.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermaerobacter marianensis DSM 12885] Length = 517 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 180/446 (40%), Positives = 256/446 (57%), Gaps = 16/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + + ++GCQMN DS + G +D+ADLI+LNTC +RE A EKV+ +G Sbjct: 58 YKILTWGCQMNERDSEILAGQLEEMGMVPAGLLDEADLILLNTCAVRETAEEKVFGTIGY 117 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ LK ++ DL++ + GC+AQ E I R P V++V G ++LP+L+ER R Sbjct: 118 LKVLK----QQNPDLILGLCGCMAQEESTIRRIQRYYPHVDLVFGTHNVHQLPQLIERVR 173 Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + VVD + E E L G GV A++ I GCDK+CTFC+VP TRG E Sbjct: 174 REEGMVVDVWQAAEGVVEHLPSRRAG-----GVKAWVNIIYGCDKYCTFCIVPTTRGRER 228 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR V+ E L G E+TLLGQNVN++ GK L G F+DLL L + G+ + Sbjct: 229 SRRPEDVIAEVEYLAAEGYKEVTLLGQNVNSY-GKDL-GTGFDFADLLARLDRVPGIRWI 286 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPRD +D LI+ + D + + HLPVQSGS+ +L+ MNRR+T Y ++I++IR Sbjct: 287 RYTTSHPRDFTDKLIRTIAESDKVTEHFHLPVQSGSNAVLRWMNRRYTREYYLRLIEKIR 346 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PD I++D IVGFP ET++DFR T+DLV ++ Y AF+F YSPR GTP + Q+ Sbjct: 347 EAVPDACITTDIIVGFPKETEEDFRQTLDLVRQVEYDNAFTFIYSPREGTPAARW-PQLP 405 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 VK ERL L + + N VGQ VLI+ K+ + L R+ + V++ Sbjct: 406 REVKQERLERLMEVQYAINLRKNQRLVGQTAVVLIDGPSKKNPRVLSARTRTNKLVLVPG 465 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 + G +V IT + TL G ++ Sbjct: 466 EAAWSGRFARVEITRAQTFTLEGRML 491 >gi|288928957|ref|ZP_06422803.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon 317 str. F0108] gi|288329941|gb|EFC68526.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon 317 str. F0108] Length = 440 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 162/451 (35%), Positives = 261/451 (57%), Gaps = 20/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GYE DAD I +NTC +RE A K+Y+ L Sbjct: 2 KKLYIETYGCQMNVADSEVVAAVMQMAGYEMCQDEADADAIFMNTCSVRENAENKIYNRL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ K+G +++ V GC+A+ ++++ +V GP +Y LP+++ +A Sbjct: 62 DTL----HAEQKKGRKVILGVLGCMAERVKDDLIENHH-AQLVAGPDSYLNLPDMIAQAE 116 Query: 145 FGKRVVDTDYSVEDKF-----ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G + +D S + + +R+++ ++ F++I GCD FC +C+VPYTR Sbjct: 117 AGNKAIDIALSKTETYRDVVPKRVALAK--------ISGFVSIMRGCDNFCHYCIVPYTR 168 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR + +++E R L G E+TLLGQNVN+++ +G+ F LL ++E Sbjct: 169 GRERSRDVDSILNEVRNLQQQGYKEVTLLGQNVNSYQFVNEEGQTIDFPQLLRLVAEAVP 228 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +R+R++T HP+DMSD ++ ++ + ++HLP+QSGSD++LK MNR++T Y + Sbjct: 229 TMRIRFSTPHPKDMSDATLRVIAEVPNVCRHIHLPIQSGSDKVLKLMNRKYTVEWYLSRV 288 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 IR + PD +S+D VG+ GET+ D ++ ++ ++GY AF FKYS R GT S L Sbjct: 289 KAIRELVPDCGLSTDIFVGYHGETEADHEESLRIMREVGYDSAFMFKYSERPGTYASKHL 348 Query: 380 -EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 + V E+VK RL L E N A VG + EVL+E K + +L GR+ + Sbjct: 349 PDDVPEDVKIRRLNELIMVQNENSARANHAEVGNVREVLVEGPSKRSREQLCGRTEQNKM 408 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + NH+IG+ +KVRIT +TL GE V Sbjct: 409 VVFDKGNHHIGEYVKVRITGSTSATLLGEAV 439 >gi|237745063|ref|ZP_04575544.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 7_1] gi|256026731|ref|ZP_05440565.1| MIAB protein [Fusobacterium sp. D11] gi|289764728|ref|ZP_06524106.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. D11] gi|229432292|gb|EEO42504.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 7_1] gi|289716283|gb|EFD80295.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. D11] Length = 435 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 163/447 (36%), Positives = 266/447 (59%), Gaps = 16/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + +YGCQMNV +S +++ +F + GY+ +D+AD + LNTC +RE AA +++ L Sbjct: 2 KRASIITYGCQMNVNESAKIKKIFQNLGYDITEEIDNADAVFLNTCTVREGAATQIFGKL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++ LK R ++ V GC AQ +GEE++++ PI+++V+G Q R+P+ +E+ Sbjct: 62 GELKALKEKR-----GTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIE 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + ED+ + G ++ TA ++I GC+ FCTFC+VPY RG E S Sbjct: 117 NNESTHEVYTDNEDELPPRLDAEFGSDQ----TASISITYGCNNFCTFCIVPYVRGRERS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 L ++V + + + G EI LLGQNVN++ +G+ F+ LL + ++KG +R Sbjct: 173 VPLEEIVKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVKGDYIVR 230 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + + HPRD +D +I D + LHLP+QSGS +IL+ M R +T +Y ++D+I+S Sbjct: 231 FVSPHPRDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKS 290 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P +A+++D IVGFPGET++DF T+D+V K+ + ++ F YS R GT + M Q+DE Sbjct: 291 KIPGVALTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIDE 350 Query: 385 NVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441 +VK ERL L + + + SFN++ +I+ VL+E K+ K L GR+ + V+ Sbjct: 351 SVKKERLQRLME--VQNKCSFNESSKYKDKIVRVLVEGPSKKNKEVLSGRTSTNKIVLFK 408 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 G + V+I + K TLYGE+V Sbjct: 409 GDIALKGQFVNVKINECKTWTLYGEIV 435 >gi|149369934|ref|ZP_01889785.1| 2-methylthioadenine synthetase [unidentified eubacterium SCB49] gi|149356425|gb|EDM44981.1| 2-methylthioadenine synthetase [unidentified eubacterium SCB49] Length = 479 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 171/462 (37%), Positives = 264/462 (57%), Gaps = 27/462 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGC MN DS + + QG+ ++++ADL+++NTC IR+KA + V L Sbjct: 24 RKLFIESYGCAMNFSDSEIVASILSEQGFNTTQTLEEADLVLVNTCSIRDKAEQTVRKRL 83 Query: 85 GRIRNLK---NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + +K N ++K G V GC+A+ E+ L IV++VVGP Y LP LL Sbjct: 84 EKYNAVKRDINPKMKVG------VLGCMAERLKEKFLDEEKIVDMVVGPDAYKDLPNLLA 137 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G V+ S ++ + ++ V N G+ A ++I GCD CTFCVVP+TRG Sbjct: 138 EVEAGNDAVNVVLSKDETYGDIAPVRLNTN---GINALVSITRGCDNMCTFCVVPFTRGR 194 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEKCT---FS 248 E SR ++DE KL ++G E+TLLGQNV++ W G GL + EK T FS Sbjct: 195 ERSRDPKSILDEISKLANSGYKEVTLLGQNVDSYLWYGGGLKKDYKNATEMEKATATSFS 254 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 LL ++ + +R+R++TS+P+DM++ + + ++HLPVQSGS+RILK MNR Sbjct: 255 QLLDLVASAQPEMRIRFSTSNPQDMTEEVFHVMAKHKNICKHVHLPVQSGSNRILKEMNR 314 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 +HT EY +++R+ + P+ +IS D I+GFP ET+ D + T+DL++K+ ++ + +KYS Sbjct: 315 QHTVEEYLALVNRMWEIIPEASISQDMIIGFPSETEQDHKDTLDLMEKVKFSFGYMYKYS 374 Query: 369 PRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-G 426 R GT + E V E K RL + + R+ VG++ EVLIEK K+ Sbjct: 375 ERPGTMAARKFEDDVPEATKKRRLQEIVDQQRKDAAYRTQQFVGKVTEVLIEKVSKKNPD 434 Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + GR+ VV +N+ +GD ++V I D +TL GE V Sbjct: 435 QWSGRNEQSIGVVFPKENYKVGDFVQVLIKDCTSATLIGEAV 476 >gi|283853068|ref|ZP_06370324.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. FW1012B] gi|283571535|gb|EFC19539.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. FW1012B] Length = 446 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 177/452 (39%), Positives = 252/452 (55%), Gaps = 24/452 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F V + GCQMNV D + + G+ + ADL +L TC +REK +KV S LG Sbjct: 2 KFHVITMGCQMNVGDGDWLTRSLQTTGFTPAPEHE-ADLFILFTCSVREKPEQKVASELG 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ--TYYRLPELLERA 143 RI + R ++ + V V GCVAQ G + RR P+V +V G Sbjct: 61 RIAD----RHRDNPNACVAVGGCVAQQLGTSLWRRFPMVRLVFGTDGIAAAPRALARLAE 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR-GVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G R+ D++ E ER D + R AF++I +GCD +C +C+VP+ RG + Sbjct: 117 EPGLRLSLLDFT-ESYPER----DQSWPEDRLPPRAFVSIMQGCDNYCAYCIVPFVRGRQ 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGL 260 SR + VV+E R L + GV E+TLLGQNVN++ GLD G+ +F+ LL +++ + G+ Sbjct: 172 KSRGAAAVVEECRNLAERGVREVTLLGQNVNSY---GLDASGDGTSFARLLDAVAAVPGI 228 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+TTSHP+D+SD +I+ G L L P LHLPVQSGSDRIL+ M RR+ +YR+++ Sbjct: 229 ARIRFTTSHPKDLSDDVIERFGSLPQLCPALHLPVQSGSDRILRRMGRRYDTADYRRLVA 288 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R RPD+A+++D IVGFPGET+ DF+ T+DLV ++ + FSF Y R GT + Sbjct: 289 KLRRARPDLALTTDLIVGFPGETEADFKETLDLVREVRFESGFSFMYGDRPGTASERLEP 348 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQ 436 ++ KA RL LQ L + A VG E+LIE + G GR PW + Sbjct: 349 KIAPEAKAARLAELQTLLDAGLTASLAARVGTSAEILIEGPSRRDGAAGPSWRGRDPWGR 408 Query: 437 SVVLNSKNHN--IGDIIKVRITDVKISTLYGE 466 V L H G I+ RI K +L GE Sbjct: 409 IVNLPLPGHGDAAGTIVPARIVQAKKHSLIGE 440 >gi|325299379|ref|YP_004259296.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacteroides salanitronis DSM 18170] gi|324318932|gb|ADY36823.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacteroides salanitronis DSM 18170] Length = 463 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 167/443 (37%), Positives = 257/443 (58%), Gaps = 10/443 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GYE ++D+AD + +NTC IR+ A +K+ + L Sbjct: 19 KKLFIETYGCQMNVADSEVVASVMQMAGYEPCGTLDEADAVFMNTCSIRDNAEQKILNRL 78 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 L+ R L+V V GC+A+ E+++ V++V GP Y LP+L+ Sbjct: 79 EFFHALRKKR----KHLIVGVLGCMAERVKEDLIENHH-VDLVAGPDAYLSLPDLIASVE 133 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ ++ + S + + + NR V+ +++I GC+ FC +C+VPYTRG E S Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNR---VSGYVSIMRGCNNFCHYCIVPYTRGRERS 190 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ +++E L G E+TLLGQNVN++R + DG TF LL +++E +R+R Sbjct: 191 RDVASILNEVNDLCQKGYKEVTLLGQNVNSYRFEQADGTVITFPMLLRTVAEAVPGMRVR 250 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP+DMSD ++ D+ + ++HLPVQSGS RILK MNR++T Y + + IR Sbjct: 251 FTTSHPKDMSDETLQVIADVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAIRR 310 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVD 383 + PD +S+D GF ET++D + ++ L+ + Y AF FKYS R GT S L + V Sbjct: 311 IIPDCGLSTDIFSGFHSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDDVP 370 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442 E VK RL L + + N VG+ EVL+E K K +L GR+ + VV + Sbjct: 371 EEVKIRRLNELIELQNQLSAESNAKDVGKTFEVLVEGVSKRSKEQLFGRTEQNKVVVFDR 430 Query: 443 KNHNIGDIIKVRITDVKISTLYG 465 H IGD +KVRIT+ +TL G Sbjct: 431 GTHRIGDFVKVRITESSSATLKG 453 >gi|46447392|ref|YP_008757.1| 2-methylthioadenine synthetase [Candidatus Protochlamydia amoebophila UWE25] gi|81626503|sp|Q6MAB7|MIAB_PARUW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|46401033|emb|CAF24482.1| probable 2-methylthioadenine synthetase [Candidatus Protochlamydia amoebophila UWE25] Length = 450 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 174/448 (38%), Positives = 272/448 (60%), Gaps = 20/448 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++FFVK+YGCQMN DS M ++G R + +DADL++ NTC IR+ A KV L Sbjct: 17 KKFFVKTYGCQMNELDSEIMIGQLENRGLTRSHDENDADLLIFNTCSIRDLAERKVMGKL 76 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143 G++ K S+ ++ V GC+A A+ + + ++ P ++ V+G + L +L E Sbjct: 77 GKLGLTKQSQA------IIGVTGCMANAKKDSLFQKLPHIDFVLGTNNIHDLNHVLDEVL 130 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK+ + TD E + + L+ R+ + A+++I GCDKFCT+CVVPYTRG E+ Sbjct: 131 ASGKQSIRTDDHFEFELDYLNA-----KREDQIKAYVSIIRGCDKFCTYCVVPYTRGSEV 185 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR+ +++E R L++ G EITLLGQNVN++ GK KC F DLLY L +I GL R+ Sbjct: 186 SRAPENILEECRHLVNQGYKEITLLGQNVNSY-GKDKLEWKCLFHDLLYQLDKIPGLERV 244 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP D+S L++A DL L ++H P+Q+GS+R+LK M+R +T +Y + + ++ Sbjct: 245 RFMTSHPVDISKELMEAIRDLKTLCEFVHFPLQAGSNRVLKKMHRIYTVEQYLEKVQMLK 304 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P++A+ +D IVGFP ET+++F+ T L+ +I Y+ AF F YSPR GTP + V Sbjct: 305 EIVPNVALGTDIIVGFPTETEEEFQETYRLLKEIEYSVAFLFSYSPRKGTPAMRWRDDVP 364 Query: 384 ENVKAERLLCLQKKLREQQVSF---NDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVV 439 E VK +R LQ+ L+ Q + A +GQ +EVL+E+ + +LV GR+ ++V+ Sbjct: 365 EEVKQDR---LQRLLQLQDTIYMKHRQAFLGQTVEVLVERRNFKDDRLVKGRTRCWKNVL 421 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467 + +G + +V+I TL G+L Sbjct: 422 FTGGDELVGTMQQVKIHGYSHQTLLGDL 449 >gi|297621452|ref|YP_003709589.1| miaB-methiolase [Waddlia chondrophila WSU 86-1044] gi|297376753|gb|ADI38583.1| miaB-methiolase [Waddlia chondrophila WSU 86-1044] Length = 439 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 167/449 (37%), Positives = 265/449 (59%), Gaps = 20/449 (4%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FFV++YGCQMN D+ + + S+G ER + ADL++ NTC IR+ A KV Sbjct: 4 PKNFFVRTYGCQMNELDTEVIVGLLESRGLERTEDENLADLLIYNTCSIRDLAERKV--- 60 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 +G++ L SR K D ++ V GC+A A+ + + R+ P ++ V+G + L +L E Sbjct: 61 MGKLGKLGRSRKK---DKMIGVTGCMANAKKDTLFRKLPHIDFVLGTNNIHDLNSVLDEV 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G + TD +KF + R + AF++I GCDKFCT+CVVPYTRG E Sbjct: 118 MATGTQSCRTD----EKFS-FELDYASAKRDDHLKAFVSIIRGCDKFCTYCVVPYTRGPE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SRS +++E ++L D G E+TLLGQNVN++ GK C F DLL + + G+ R Sbjct: 173 VSRSPEHIIEEIKQLADKGYKEVTLLGQNVNSY-GKDQPEWNCLFHDLLERIDQETGIAR 231 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHP D++ L++A D D L ++H P+QSGS RIL+ M+R +T +Y + + + Sbjct: 232 VRFMTSHPVDITRELMEAIRDFDSLCEFVHFPIQSGSSRILRKMHRIYTLEQYMEKVQML 291 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + + P++++ +D IVGFP ET+++F+ T D + +I Y+ AF F YSPR GTP + + Sbjct: 292 KEIVPNVSLGTDVIVGFPTETEEEFQMTYDAMKEIEYSVAFIFAYSPRKGTPAMRWKDDI 351 Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSV 438 E VK E RL+ LQ+ + ++Q+ +G+ +EVL+E+ + + V GR+ + V Sbjct: 352 PEEVKQERLHRLMELQESIYKKQLQ---EMMGKEVEVLVERRNSKDDRFVKGRTSCWKKV 408 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467 + + IG + KV + TL G++ Sbjct: 409 IFPGTDEMIGTLQKVIVDGYSHQTLIGKM 437 >gi|222151135|ref|YP_002560289.1| tRNA-i(6)A37 modification enzyme MiaB [Macrococcus caseolyticus JCSC5402] gi|222120258|dbj|BAH17593.1| tRNA-i(6)A37 modification enzyme MiaB [Macrococcus caseolyticus JCSC5402] Length = 509 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 164/448 (36%), Positives = 268/448 (59%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + YE + ++DAD+I+LNTC IRE A KV+ + Sbjct: 65 RKFYIRTYGCQMNEHDTEVMAGIFEALEYEATSDVNDADVILLNTCAIRENAENKVFGEI 124 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++++K ++ D+L+ V GC++Q E +IL+ V+++ G +RLP +L+ Sbjct: 125 GNLKHIKQAK----PDVLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPAILDE 180 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L +R A++ I GCDKFCT+C+VP+TRG Sbjct: 181 AYMSKAMVVEVWSKEGDVIENLP-----KSRLGDTKAWVNIMYGCDKFCTYCIVPFTRGK 235 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++ E R L G EI LLGQNVNA+ GK +DG DLL + +I + Sbjct: 236 ERSRMPEEIIAEVRDLARRGYKEICLLGQNVNAY-GKDIDGLNYGLGDLLADIQKID-IP 293 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP D D LI+ ++P++HLPVQSG++ +LK M R+++ Y +++ + Sbjct: 294 RVRFTTSHPWDFDDRLIEVIAAGGNIVPHIHLPVQSGNNEVLKIMGRKYSRESYLELVGK 353 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ P++A+++D IVG+P ET++ F+ T+ L +++ + A+++ YSPR GTP + M + Sbjct: 354 IKAAMPEVALTTDIIVGYPNETEEQFQETLSLYEEVAFDHAYTYLYSPREGTPAAKMEDN 413 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V K +RL L K + + + Q + VL E K+ + L G + + V Sbjct: 414 VPMREKKDRLQRLNKLVGDYTERALSHYLDQEVVVLCEGPSKKNDEILAGYTEKNKLVNF 473 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 N IG ++KVRIT+ K ++ GEL+ Sbjct: 474 NGPKEAIGQLVKVRITETKQYSMNGELI 501 >gi|34540755|ref|NP_905234.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Porphyromonas gingivalis W83] gi|81416611|sp|Q7MAW4|MIAB_PORGI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|34397069|gb|AAQ66133.1| tRNA-i(6)A37 modification enzyme MiaB [Porphyromonas gingivalis W83] Length = 463 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 168/453 (37%), Positives = 268/453 (59%), Gaps = 22/453 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GY +++D+AD I++NTC +R+ A +KV + L Sbjct: 18 RKLYIETYGCQMNVADSEVVASVMQMDGYNLTDNVDEADTILVNTCSVRDNAEQKVLNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +L+ R + L++ V GC+A+ EE++R V+VV GP +Y LP L+ A Sbjct: 78 AYYHSLRKKR-RASSRLVIGVLGCMAERVKEELIREHH-VDVVAGPDSYLDLPNLVGAAE 135 Query: 145 FGKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G++ ++ + S ++ ++ + + GG + + F++I GC+ FC++C+VPYTRG E Sbjct: 136 QGEKAINVELSTQETYKDVMPLKMGGVH----INGFVSIMRGCNNFCSYCIVPYTRGRER 191 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +++E R L E+TLLGQNVN++R + +G F DLL +++E +R+ Sbjct: 192 SREIESILNEVRDLKAKNFREVTLLGQNVNSYRYEQ-NGRIIRFPDLLAAVAEAVPDMRI 250 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP+DM D I + ++HLP QSGSD++L+ M R Y R +DR+ Sbjct: 251 RFTSPHPKDMDDEAIAVMARYRNICNHIHLPAQSGSDKMLRVMKR---GYTRRWYLDRVA 307 Query: 324 SVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379 ++R PD AISSD GF ET++DF AT+ L++++ Y AF FKYS R GT + L Sbjct: 308 AIRRAIPDCAISSDLFCGFHSETEEDFEATLSLMEEVRYDSAFMFKYSERPGTYAARHLA 367 Query: 380 EQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWL 435 + V E VK RL + LQ +L E+ N +G+ EVLIE K + +L GR+ Sbjct: 368 DDVPEEVKLSRLDRMIALQNRLSEES---NKRDIGKTFEVLIEGFSKRSREQLFGRTQQN 424 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V+ + H +G I VRI D +TL+GE+V Sbjct: 425 KVVIFDKNGHRVGQYIYVRIKDASSATLFGEVV 457 >gi|303233246|ref|ZP_07319918.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium vaginae PB189-T1-4] gi|302480636|gb|EFL43724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium vaginae PB189-T1-4] Length = 459 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 181/466 (38%), Positives = 271/466 (58%), Gaps = 21/466 (4%) Query: 13 MVSQIV-DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71 M Q+V D +V + + +K++GCQMN++DS R+ + G V ++++AD++V TC Sbjct: 1 MERQLVQDNKLVGKTYLIKTFGCQMNLHDSERVAGLLDDCGCNEVQTVEEADIVVFMTCS 60 Query: 72 IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131 +REKA +Y G + NL G ++ V GC+AQ +G + + P V+VV G Sbjct: 61 VREKADTHLY---GAVSNLVVVPAPPCGKRVIAVGGCIAQRDGARLKKHIPNVDVVFGTS 117 Query: 132 TYYRLPELLERA--RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188 +PELL A G V VDT VE R + R++ A++ I GC+ Sbjct: 118 ALASVPELLCEAFESDGSEVFVDT---VEKN--RGFSCELPSKREQYFHAWVPIMTGCNN 172 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248 FCTFC+VP RG E SR +VV E +L+D+GV E+TLLGQNVN++ G+ L G K FS Sbjct: 173 FCTFCIVPLVRGRERSRVFERVVAEVARLVDDGVREVTLLGQNVNSY-GRDLYG-KPRFS 230 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 +LL + + G+ R+R+T+S+P+D+S I+A + +MP LHL VQSGS+RIL++M+R Sbjct: 231 ELLREVGKT-GIERIRFTSSNPKDLSHDTIRAMAETPNVMPQLHLAVQSGSNRILRAMHR 289 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + +Y +I ++ P IA+S+D IVGFPGET++DF TM LVD++GYA A++F YS Sbjct: 290 AYNREKYLSVIAELKEAIPGIALSTDIIVGFPGETEEDFLQTMSLVDEVGYASAYTFIYS 349 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK- 427 R GTP + +++ V ER L K++ E S N + + L+E K+ Sbjct: 350 KRPGTPAAKIVDTTPHEVIQERFERLTKRIEELAYSANQVDLHAHVTALVEGTSKKNPSV 409 Query: 428 LVGRSPWLQSVVLN-----SKNHNIGDIIKVRITDVKISTLYGELV 468 LVG SP Q+V+ + H IG + +V I++ K L G LV Sbjct: 410 LVGHSPKNQTVLFDLPEGTKPEHFIGQMCEVEISEAKTWYLRGSLV 455 >gi|313157989|gb|EFR57395.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alistipes sp. HGB5] Length = 445 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 168/444 (37%), Positives = 261/444 (58%), Gaps = 14/444 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FV++YGCQMNV D+ + + +GY +D+AD+I++NTC IR+ A ++++ Sbjct: 9 RKLFVETYGCQMNVGDTEIVVSVMQREGYVYTERIDEADVILINTCSIRDNAEQRIW--- 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+ +K R G L+V V GC+A+ E+++ V+VV GP Y LP L+ A Sbjct: 66 GRLAEMKRYRRANPG-LVVGVIGCMAERLKEKLVEGPHGVDVVAGPDVYRDLPRLVREAE 124 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + V+ S E+ + ++ V N GV+AF+ I GC+ FC++CVVPYTRG E S Sbjct: 125 AGGKGVNVLLSTEETYAEIAPVRLDRN---GVSAFVAIMRGCNNFCSYCVVPYTRGRERS 181 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ E R L NG E+TLLGQNVN++R +D F L+ ++ + L+R+R Sbjct: 182 RDPETILAEVRTLFGNGYREVTLLGQNVNSYRFGEVD-----FPGLMRRVASVSPLLRVR 236 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D+SD L++ ++ + +HLP QSG+ +L MNR++T Y + IR Sbjct: 237 FATSHPKDISDSLLEVMAEMPNICRAIHLPAQSGASSMLARMNRKYTREWYLDRVAAIRR 296 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVD 383 PD A+++D I GF GET+++ AT+ L+ ++GY A+ FKYS R GT L + V Sbjct: 297 YLPDCAVTTDLIAGFSGETEEEHAATLSLMREVGYEFAYMFKYSERPGTYAHKHLPDDVP 356 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442 E VK+ RL + E + N VG+ EVL+E K ++ +L GR+ + VV + Sbjct: 357 EEVKSARLAEIIALQNELSRASNLRDVGREFEVLVEGTSKRDENQLSGRTSQNKVVVFDR 416 Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466 H +GD ++VRIT +TL+GE Sbjct: 417 GGHGVGDYVRVRITGCTPATLFGE 440 >gi|302344087|ref|YP_003808616.1| RNA modification enzyme, MiaB family [Desulfarculus baarsii DSM 2075] gi|301640700|gb|ADK86022.1| RNA modification enzyme, MiaB family [Desulfarculus baarsii DSM 2075] Length = 447 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 173/446 (38%), Positives = 258/446 (57%), Gaps = 24/446 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + ++GCQMN YDS RM M GY ADL++ NTC +R+KA +K+YS LG + Sbjct: 12 IATFGCQMNEYDSARMARMLGQMGYIAEADPQKADLVIFNTCSVRDKAEQKLYSALGPLV 71 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +K R DL++ V GCVAQ EG +LRR ++ V+G +LPEL+ A G R Sbjct: 72 KIKRQR-----DLIIGVTGCVAQQEGRRLLRRVAHLDFVLGTAQIDKLPELVHDAAKGLR 126 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + S++ E IV + G++A +T+ GCD FC++CVVPY RG E SR Sbjct: 127 --RAELSLKRASEPAPIV---LPPQVGLSANVTVMRGCDNFCSYCVVPYVRGREQSRPAD 181 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 QV++E L+ G E+ LLGQNV+++R G+G+ F++LL + ++GL R+R+ Sbjct: 182 QVLEEIAALVAAGAREVVLLGQNVDSYRDPGRGIG-----FAELLRLAAGVEGLWRVRFL 236 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHP+D+S LI+ +M +HLP+QSG D +L +MNR +T +Y ++ +R Sbjct: 237 TSHPKDLSPELIETLAAEPKVMEQMHLPIQSGDDSVLAAMNRGYTTGQYLAKVEALRRAA 296 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P++ + D IVGFPGE+ D F T++LV+++GY F F YS R T S M ++D++V Sbjct: 297 PEVTLGGDIIVGFPGESADAFARTLELVERVGYDTLFCFIYSDRPFTKASRMTGKIDQDV 356 Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442 KA R LL L ++L ++ N A VG I EVL+E K+ +G L GR +V Sbjct: 357 KASRVNQLLELHRRLGRER---NRARVGTIREVLVEGPAKKGQGMLAGRDRGGLAVNFAG 413 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 + +G I +V +T ++L G L Sbjct: 414 EAALVGTIQRVLVTQGLTNSLIGRLA 439 >gi|166031818|ref|ZP_02234647.1| hypothetical protein DORFOR_01519 [Dorea formicigenerans ATCC 27755] gi|166028271|gb|EDR47028.1| hypothetical protein DORFOR_01519 [Dorea formicigenerans ATCC 27755] Length = 470 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 180/456 (39%), Positives = 260/456 (57%), Gaps = 30/456 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P F V ++GCQMN DS ++ + GYE S ++AD ++ NTC +RE A +VY Sbjct: 34 PMTFCVTTFGCQMNARDSEKLRGILLEIGYEEA-SEEEADFVIFNTCTVRENANTRVYGR 92 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLE 141 LG++++ K K+ + + + GC+ Q E E LR S V+++ G Y+ EL+ Sbjct: 93 LGQLKSHK----KKNPHMKIALCGCMMQEPEVVEKLRTSYRFVDLIFGTHNIYKFAELIT 148 Query: 142 RARFGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 G R+V DTD VED D Y+ K GV I GC+ FC++C+VP Sbjct: 149 AVYEGGRMVIDIWKDTDKIVEDLPN-----DRKYSFKSGVN----IMFGCNNFCSYCIVP 199 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 Y RG E SR +V E +L+ +GV E+ LLGQNVN++ GK L+ E F++LL + + Sbjct: 200 YVRGRERSRKPEAIVREIERLVADGVTEVMLLGQNVNSY-GKNLE-EPLPFAELLQKIEQ 257 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I+GL R+R+ TSHP+D+SD LI+ G + +LHLPVQSGS RILK MNR +T +Y Sbjct: 258 IEGLHRIRFMTSHPKDLSDELIEVMGKSKKICKHLHLPVQSGSSRILKKMNRHYTKEQYL 317 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +++D+IR+ PDI++++D IVGFPGET++DF T+D+V K+ Y AF+F YS R GTP + Sbjct: 318 ELVDKIRAAVPDISLTTDIIVGFPGETEEDFLETLDIVRKVRYDSAFTFIYSKRTGTPAA 377 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACV---GQIIEVLIEKHGKEKGKLV-GRS 432 M +QV E V +R + L+E Q + C G + EVL+E +V GR Sbjct: 378 TMEDQVPEEVVKDR---FDRLLKEVQTIAAEVCAVHEGTVQEVLVESVSDHDDHMVTGRL 434 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V IGD + V++ K GE V Sbjct: 435 SNNILVHFRGDASMIGDYVNVKLDQCKGFYYIGEQV 470 >gi|42523558|ref|NP_968938.1| hypothetical protein Bd2086 [Bdellovibrio bacteriovorus HD100] gi|81617194|sp|Q6MLC6|MIAB_BDEBA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|39575764|emb|CAE79931.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100] Length = 453 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 161/444 (36%), Positives = 259/444 (58%), Gaps = 17/444 (3%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 ++ +YGCQMNV D+ RM + Q + V A LI++N+C +REK KVYS +G Sbjct: 24 YISTYGCQMNVNDTERMYALLEMQNFVPVTDPKKASLIIINSCSVREKPVHKVYSEVGTY 83 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG- 146 + +K ++ +L + V GCV Q E E +++ P+++ V G LP+L+ ++ G Sbjct: 84 KYMK----RKNPELKIGVGGCVGQQEKENLMKTQPMIDFVFGTDQIDSLPQLVAKSFAGE 139 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +R+V++ + + ++V R GV ++ I +GCD FCTFCVVPYTRG E SR Sbjct: 140 RRLVNSRFEHRSPYHIETLV-----RNPGVATYVNITKGCDNFCTFCVVPYTRGREKSRP 194 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + ++ + R L+ GV E+TLLGQNVN+++G +G+D F+DLL +++ + R+RY Sbjct: 195 VQHILTDIRHLVKRGVKEVTLLGQNVNSYQGDEGID-----FADLLAKVAKETDVERIRY 249 Query: 266 TTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 TTSHP+D + L+ + + +M Y+HLP Q+GS ++L+ MNR +T EY + I I+ Sbjct: 250 TTSHPKDFNQKLVDVMAEHSNKIMEYIHLPFQAGSTKVLERMNRNYTREEYLERIAMIQK 309 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P++ S+D IVGFPGET++DF+ T+++V ++G+ F+F YSPR T + +Q+ E Sbjct: 310 GLPNVCFSTDIIVGFPGETEEDFQDTLNMVTEVGFETIFAFSYSPRPFTKAAKFEDQLPE 369 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +VK ERL L G ++VL+E ++ GK+ GRS + V Sbjct: 370 DVKNERLNRLFDVHEAMAFERVKRYEGTTMKVLVENVDRDHGKMQGRSTGNKLVHFLGTA 429 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG + V+IT + GE++ Sbjct: 430 DLIGKTVDVKITKAFPAVFRGEMI 453 >gi|257784577|ref|YP_003179794.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469] gi|257473084|gb|ACV51203.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469] Length = 455 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 169/454 (37%), Positives = 262/454 (57%), Gaps = 18/454 (3%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +V + + +K++GCQMN++D+ R+ + + G V+ DDAD+++ TC +RE A +++Y Sbjct: 7 LVGKTYHIKTFGCQMNLHDTERVSGLLEACGCNEVSDTDDADIVIFMTCSVRENADQRLY 66 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 G+ + ++ G +V + GC+AQ +GE++ + P V+VV G LP LL Sbjct: 67 ---GQASAMVSAPTPPSGKRIVAIGGCIAQRDGEKLREKVPAVDVVFGTSALASLPALLT 123 Query: 142 RARFGKR-VVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 A G+ V D S E K F D NR + A++ I GC+ FCT+C+VPY R Sbjct: 124 SAFRGENDRVAVDISEEGKGFS----TDLPSNRAQQYHAWVPIMTGCNNFCTYCIVPYVR 179 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR+ V+ E +L+ +GV EITLLGQNVN++ G+ L G K F++LL ++ + G Sbjct: 180 GRERSRTFEAVIGECERLVADGVREITLLGQNVNSY-GRDLYG-KPRFAELLRAVGQT-G 236 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+T+S+P+D++D I A + +MP+LHL VQSGS R+LK MNR +T EY ++ Sbjct: 237 VERIRFTSSNPKDLTDETIAAMKETPAVMPHLHLAVQSGSTRVLKKMNRSYTREEYLDVV 296 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R+R+ P +A+S+D IVGFPGET++DF T+ LV + GY+ A++F YS R GTP + Sbjct: 297 SRLRAAIPGLALSTDIIVGFPGETEEDFEETLSLVKEAGYSSAYTFIYSKRPGTPAAKYE 356 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438 + V ER L + + +Q N + VL+E K +VG S Q+V Sbjct: 357 DNTPHEVIQERFDRLAELVAQQAHEANQVDLNTTQAVLVEGTSKRDDTVMVGHSEKNQTV 416 Query: 439 VLN-----SKNHNIGDIIKVRITDVKISTLYGEL 467 N + IG I+ V I + + L G + Sbjct: 417 HFNLPEGYTSKDLIGKIVDVHIDEARTWYLRGTM 450 >gi|294055618|ref|YP_003549276.1| RNA modification enzyme, MiaB family [Coraliomargarita akajimensis DSM 45221] gi|293614951|gb|ADE55106.1| RNA modification enzyme, MiaB family [Coraliomargarita akajimensis DSM 45221] Length = 461 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 173/460 (37%), Positives = 272/460 (59%), Gaps = 29/460 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++K+YGCQMN DS + M ++GY V S DAD+I+LNTC +RE+A +K G Sbjct: 3 RVYIKTYGCQMNERDSDAVAAMLRAKGYSIVGSESDADVILLNTCSVREQAEQKAIGKAG 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +R K+ +L+V + GC+AQ G+++L R P ++++VG Q ++R+P+ L+ Sbjct: 63 HI----TARKKKNPNLVVGIMGCMAQNRGDDLLDRLPDLDLIVGTQKFHRVPDHLD---- 114 Query: 146 GKRVVDTDYSVEDKFERLSIV------DGGYNRKR-------GVTAFLTIQEGCDKFCTF 192 + S++ + R S V G N R V+AF++I +GC+ C++ Sbjct: 115 -----NMIASLQGQGPRPSTVVDLEAEAGSQNTIREHAEDTVQVSAFVSIMQGCNMKCSY 169 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDL 250 C+VP TRG E +R + Q+VDE + L G E+TLLGQ VN + R +K F L Sbjct: 170 CIVPKTRGAERARPMDQIVDEIKDLAAKGTKEVTLLGQIVNQYGIREFPFVDKKSPFVQL 229 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L ++EI G+ R+R+T+ HP D LI+ + L L YLH P+QSGSDR+LK+M R + Sbjct: 230 LEKVNEIDGIERIRFTSPHPVGFKDDLIECYARLPKLCEYLHFPMQSGSDRVLKAMRRPY 289 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + +R+IID++R++RPDI IS+D IVGFPGETD+DF T +++G+ A+ FKYS R Sbjct: 290 SIERFRRIIDKLRAIRPDIYISTDVIVGFPGETDEDFELTRKHFEEVGFDMAYLFKYSVR 349 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLV 429 GT + + + VK +R L L ++ + N++ +G + +VL E ++ + + Sbjct: 350 PGTTAEPLGDPIATEVKEKRNQILLDILGKRSLERNESLLGTVEDVLFEGPARKGENMFM 409 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 GR+ + V++ + IG ++ VRI STL+GELV+ Sbjct: 410 GRTRGHRKVIVKASPRLIGQLVPVRIQRATTSTLFGELVL 449 >gi|78188191|ref|YP_378529.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobium chlorochromatii CaD3] gi|123770899|sp|Q3AU39|MIAB_CHLCH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|78170390|gb|ABB27486.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chlorobium chlorochromatii CaD3] Length = 449 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 165/450 (36%), Positives = 258/450 (57%), Gaps = 14/450 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P F++ ++GCQMN DS M + ++GY ++ DA +++LNTC +RE A E+V Sbjct: 6 PDAFYIHTFGCQMNQADSGIMTAILQNEGYVAASNEADAGIVLLNTCAVREHATERVGHL 65 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L ++L + + G LLV V GC+ Q E E + + P+V+ + GP TY LP L+++ Sbjct: 66 L---QHLHGRKKRSKGRLLVGVTGCIPQYEREVLFKNYPVVDFLAGPDTYRSLPLLIKQV 122 Query: 144 R-FGKRVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + GK + + F DG R ++AF+ + GC+ C +CVVP TRG Sbjct: 123 QQAGKGATEAALA----FNSAETYDGIEPVRSSSMSAFVPVMRGCNNHCAYCVVPLTRGR 178 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E S + V++E R+L + G EITLLGQNVN++ +C F++LL ++S Sbjct: 179 ERSHPKAAVLNEVRQLAEAGYREITLLGQNVNSYYDPL---AQCNFAELLAAVSCAAPAT 235 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP+D+S+ L++ + + ++HLPVQSGS RIL+ M R HT EY + I Sbjct: 236 RIRFTTSHPKDISEALVRTIAEHSNICNHIHLPVQSGSSRILRLMQRGHTIEEYLEKIAL 295 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-E 380 IRS+ P++ +S+D I GF GET+ D +AT+ L++++ + AF F YSPR TP + L + Sbjct: 296 IRSLIPNVTLSTDMIAGFCGETEADHQATLRLLEEVQFDSAFMFYYSPRPRTPAAEKLTD 355 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439 V E +K RL + + S VG ++EVL E + +L+GR+ ++VV Sbjct: 356 DVPEALKKARLQEIIECQNRISASLFSQAVGSVVEVLAEAESRRSSEQLMGRTAGNRTVV 415 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + GD++ VRIT +TL GE ++ Sbjct: 416 FARNGYQAGDVLHVRITGSTSATLLGEPLI 445 >gi|304438410|ref|ZP_07398350.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368493|gb|EFM22178.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 437 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 170/445 (38%), Positives = 257/445 (57%), Gaps = 14/445 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ + YGCQMNV D+ RME + GY R DAD+I++NTC +RE A +KVY +G Sbjct: 4 RYKILVYGCQMNVADAERMEGQLQAAGYVRTEKTADADVILINTCCVRETAEDKVYGKIG 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144 I+ +K + L+ + GC+AQ EGE ++RR+P ++ V+G L ++ E A Sbjct: 64 EIKKVKEHHPQ----LIFGITGCMAQKEGENLMRRAPHIDFVLGTGKVQELGRIVAEIAA 119 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 VVD E L I GG ++A++ I GC+ +CT+C+VPY RG E S Sbjct: 120 ERAPVVDVALDAHAVEEDLPIARGGT-----LSAWVPIMYGCNNYCTYCIVPYVRGRERS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+ +VV E R+ +G E+TLLGQNVN++ G D + F+DLL + ++G+ R+R Sbjct: 175 RTPEEVVAEVRRAAADGYREVTLLGQNVNSY---GKDHGQADFADLLRMVDAVEGIRRVR 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D+SD LI + + ++HLPVQ GS+RILK+MNR +T +YR+ R+R Sbjct: 232 FMTSHPKDISDKLIDTIKNGTHICEHIHLPVQYGSNRILKAMNRVYTVEQYRERARRVRE 291 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P ++++D IVGFPGET++DF T+D + ++ Y A++F YS R GTP + M QV + Sbjct: 292 ALPGASLTTDLIVGFPGETEEDFAETLDFLREMRYDAAYTFLYSKRSGTPAAAMAAQVPD 351 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443 VK RL L E + N+ EV++E K + GR+ + V+ Sbjct: 352 EVKHARLERLMAVQNEISRAINEGLRSAQAEVMVEGASKNDPAVWSGRTRTNKIVLFPHG 411 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 +GD ++V+IT + L GE+V Sbjct: 412 AERVGDFVQVKITQPQTWVLKGEVV 436 >gi|238063462|ref|ZP_04608171.1| RNA modification protein [Micromonospora sp. ATCC 39149] gi|237885273|gb|EEP74101.1| RNA modification protein [Micromonospora sp. ATCC 39149] Length = 511 Score = 293 bits (751), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 163/417 (39%), Positives = 250/417 (59%), Gaps = 21/417 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYS 82 P+ + V++YGCQMNV+DS R+ + GY R DD D++V NTC +RE A ++Y Sbjct: 9 PRTYQVRTYGCQMNVHDSERISGLLEQAGYVRAAEADDNPDVVVFNTCAVRENADNRLYG 68 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LG +R +K+ K G + + V GC+AQ + +I+R++P V+VV G LP LLER Sbjct: 69 NLGHLRPVKD---KHPG-MQIAVGGCLAQKDRGDIVRKAPWVDVVFGTHNIGSLPALLER 124 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRG 200 AR + VE E L + +R T +++I GC+ CTFC+VP RG Sbjct: 125 ARH-----NAAAEVE-ILESLDVFPSTLPTRRESTYAGWVSISVGCNNTCTFCIVPALRG 178 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259 E R V+ E R L+D+GV E+TLLGQNVN++ G++ G++ F LL + EI G Sbjct: 179 REKDRRPGDVLAEVRALVDSGVLEVTLLGQNVNSY---GVEFGDRYAFGKLLRACGEIDG 235 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+T+ HP+D +D +I A + + LH+P+QSGSD +L++M R + + Y II Sbjct: 236 LERVRFTSPHPKDFTDDVIAAMAETPNVCHSLHMPLQSGSDDVLRAMRRSYRSERYLGII 295 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +R+R+ PD AI++D IVGFPGET+ DF+ T+D+V + ++ AF+F+YS R GTP + M Sbjct: 296 ERVRAAMPDAAITTDIIVGFPGETEADFQRTLDVVREARFSSAFTFQYSKRPGTPAATMP 355 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432 +Q+ + V ER L + E + N +G+ +EVL+ + + G++ GR+ Sbjct: 356 DQLPKQVVQERYERLIATVEEITWAENRKLIGETVEVLVAVGEGRKDERTGRMSGRA 412 >gi|229890680|sp|B1ZVI7|MIAB_OPITP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 480 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 171/472 (36%), Positives = 262/472 (55%), Gaps = 32/472 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R +K+YGCQMN DS + M ++GY V +D D+++LNTC +R+ A +K G Sbjct: 3 RVHIKTYGCQMNERDSEAVAAMLRARGYRIVADENDCDILLLNTCSVRDAAEQKAIGKAG 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144 ++ K K+ D ++ + GC+AQ G +L + P V+++VG Q ++++P L+ R Sbjct: 63 YLQQRK----KKQPDFVLGILGCMAQNRGASLLDQLPDVDLIVGTQKFHQVPGYLDNLRA 118 Query: 145 -------FGKRVVD-----------------TDYSVEDKFERL-SIVDGGYNRKRGVTAF 179 G+ +VD D + + L S + G +TAF Sbjct: 119 ARDAGVPIGETIVDIGEEAGSQNTIKDHLLPQDSDSDSQPSTLNSQLRGAAAPPPQITAF 178 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RG 237 ++IQ+GC+ C FC+VP TRG E SR + +V E +L GV E+TLLGQ V ++ R Sbjct: 179 VSIQQGCNMDCAFCIVPKTRGDERSRPMDDIVRECEQLAARGVREVTLLGQIVTSYGRRD 238 Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297 F LL + + G+ R+R+T+ HPR D L+ A+G L L Y+HLP+QS Sbjct: 239 YTHTNGISPFVQLLERVHALDGIERIRFTSPHPRGFKDDLVAAYGRLPKLCGYVHLPLQS 298 Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 GS+RIL++MNR +T YR+I+D +R+VR D+ S+D IVGFPGETD+DF T +L + Sbjct: 299 GSNRILRAMNRPYTRERYREIVDALRAVRSDMYFSTDVIVGFPGETDEDFEQTRELFEAC 358 Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417 Y A+ FKYS R GTP + +QV E+VK +R L + LR+ N + + EVL Sbjct: 359 NYDMAYVFKYSVRTGTPAAERGDQVPEDVKEQRNQLLLELLRQNSERRNALLLDTVEEVL 418 Query: 418 IEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 +E K + GR+ + + + +G ++ +RIT +STLYGEL++ Sbjct: 419 VEGPDKTGQRFTGRTRGNRVCIFEATPDLVGRLVSLRITRASVSTLYGELML 470 >gi|314936546|ref|ZP_07843893.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis subsp. hominis C80] gi|313655165|gb|EFS18910.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis subsp. hominis C80] Length = 514 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 163/446 (36%), Positives = 263/446 (58%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ M + + Y+ + +++AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK +R + L+ V GC++Q E +IL+ V+++ G ++LPE+LE A Sbjct: 130 LKHLKKNR----PETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKV-----REGSTKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++E R+L G EITLLGQNVN++ GK + DLL +S I + R+ Sbjct: 241 SRRPQDIIEEVRELAREGYKEITLLGQNVNSY-GKDIKDLDYGLGDLLEDISNI-DIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I+ ++P++HLPVQSG++ +LK M R+++ Y ++DRI+ Sbjct: 299 RFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P ET++ F T+ L D++ + A+++ YS R GTP + M + V Sbjct: 359 EAIPNVALTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNS 442 VK +RL L KK+ + GQ++ VL E K++ L G + + V Sbjct: 419 TEVKKDRLQRLNKKVGQYSEKAMQNYEGQVVTVLCEGTSKKDETVLAGYTEKNKLVNFKG 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ V++ + K +L GE + Sbjct: 479 PREAIGQLVDVKVKEAKQYSLNGEFL 504 >gi|163839482|ref|YP_001623887.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Renibacterium salmoninarum ATCC 33209] gi|229890623|sp|A9WQ47|MIAB_RENSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|162952958|gb|ABY22473.1| tRNA 2-methylthioadenosine synthase [Renibacterium salmoninarum ATCC 33209] Length = 515 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 165/454 (36%), Positives = 268/454 (59%), Gaps = 31/454 (6%) Query: 19 DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78 D+ + P+ + V++YGCQMNV+DS RM + G + AD++V NTC +RE A Sbjct: 15 DESVTPRTYEVRTYGCQMNVHDSERMAGLLERSGLVKAEG-KVADVVVFNTCAVRENADN 73 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 K+Y LG + K + + + V GC+AQ + + IL+R+P V+VV G LP Sbjct: 74 KLYGNLGMLAPAKEANP----GMQIAVGGCLAQKDRDTILKRAPWVDVVFGTHNVGALPT 129 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVP 196 LLERAR + + + E L + KR + +++I GC+ CTFC+VP Sbjct: 130 LLERARHNEE------AQLEILESLDVFPSTLPTKRDAVYSGWVSISVGCNNTCTFCIVP 183 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLS 255 RG E R ++ E + L+++G E+TLLGQNVN++ G++ G++ FS LL + Sbjct: 184 SLRGKEKDRRPGDILAEIQALVEDGAIEVTLLGQNVNSY---GVEFGDRQAFSKLLRACG 240 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI+GL R+R+T+ HP ++ +I+A + +MP LH+P+QSGSD++LK M R + + ++ Sbjct: 241 EIEGLERVRFTSPHPAAFTEDVIEAMAETHNVMPQLHMPLQSGSDKVLKDMRRSYRSSKF 300 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I+D++R+ PD AIS+D IVGFPGET++DF+AT+D+V K +A AF+F+YS R GTP Sbjct: 301 LGILDKVRTQIPDAAISTDIIVGFPGETEEDFQATLDVVAKSRFATAFTFQYSKRPGTPA 360 Query: 376 SNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKL 428 +++ +Q+ + V + ERL LQ ++ ++ N +G+ +E+++ K E +L Sbjct: 361 ADLPDQLPKAVVQERFERLTALQDQISAEE---NARQIGREVELMVTAGSGKKAAETQRL 417 Query: 429 VGRSPWLQ----SVVLNSKNHNIGDIIKVRITDV 458 GR+ + +V + GD++ V IT+ Sbjct: 418 SGRAKDSRLVHFAVPEGEETPRPGDLVTVTITEA 451 >gi|56963955|ref|YP_175686.1| 2-methylthioadenine synthetase [Bacillus clausii KSM-K16] gi|81366024|sp|Q5WFY0|MIAB_BACSK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|56910198|dbj|BAD64725.1| 2-methylthioadenine synthetase [Bacillus clausii KSM-K16] Length = 520 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 174/468 (37%), Positives = 271/468 (57%), Gaps = 16/468 (3%) Query: 5 IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64 ++++ +++ + V ++F +++YGCQMNV+DS M + G+E ++AD+ Sbjct: 57 VQVLRPENLIPEEVANLGAGKKFLIRTYGCQMNVHDSENMSGLLLGMGFEETTETEEADI 116 Query: 65 IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSP 122 I+LNTC IRE A KV+ +G ++ LK E +L++ V GC++Q E +I+ + Sbjct: 117 ILLNTCAIRENAENKVFGEIGNLKPLK----LEKPELIIGVCGCMSQEESVVGKIMEKHQ 172 Query: 123 IVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLT 181 ++++ G +RLP LL A FGK +V +S E D E + +RK A++ Sbjct: 173 HIDLIFGTHNIHRLPHLLRDAIFGKEMVIEVWSKEGDIVENMP-----RSRKNKTQAWVN 227 Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241 I GCDKFCT+C+VPYTRG E SR ++ E R L G EITLLGQNVNA+ GK L Sbjct: 228 IMYGCDKFCTYCIVPYTRGKERSRLPEDIIAEVRDLARQGYKEITLLGQNVNAY-GKDLP 286 Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301 G DL+ + +I + R+R+TTSHPRD D LI+ L+ ++HLPVQ G+ Sbjct: 287 G-SYRLGDLMNEIHKID-IPRVRFTTSHPRDFDDHLIEVLAQGGNLVEHIHLPVQHGNSD 344 Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361 ILK M R++T +Y + ++I+ P+ + ++D IVGFP ET++ F+ + LV++I + Sbjct: 345 ILKLMGRKYTREQYITLANKIKQAIPNASFTTDLIVGFPNETEEQFQDMLSLVEEIQFDA 404 Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 A+++ YSPR GTP + M + V +VK ERL L + + N +I+EVL+E Sbjct: 405 AYTYIYSPREGTPAARMEDNVPMSVKKERLARLNALVNDISNKRNLDYQDKIVEVLVEGE 464 Query: 422 GKEKGK-LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 K+ L GR+ + V IG+I+ V+IT+ K +L GE+V Sbjct: 465 SKKNTDVLAGRTRTNRLVNFVGPKSAIGEIVYVKITEAKTWSLDGEIV 512 >gi|229890670|sp|Q2RZF8|MIAB_SALRD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 503 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 163/447 (36%), Positives = 262/447 (58%), Gaps = 9/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GY AD+++LNTC IRE A K+ + L Sbjct: 42 KQVYIETYGCQMNVNDSGIVASVLEESGYGLTRDQAAADVVLLNTCAIRENAERKIRARL 101 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143 +R+ K R G+L++ V GC+A+ E++L + +V+VVVGP Y LP+LL E Sbjct: 102 SMLRSEKEKR---DGELMLGVLGCMAERLREKLLEQEDLVDVVVGPDAYRDLPQLLYEAD 158 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+ V+ + S ++ +E + V N GV+A+++I GCD CTFCVVP+TRG E Sbjct: 159 ATGQAAVNVELSKQETYEDIQPVRYDSN---GVSAYVSIMRGCDNMCTFCVVPFTRGREE 215 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ ++ E +L + G E+TLLGQNVN++ DG +F++L+ +S + +R+ Sbjct: 216 SRPVTTILSEVARLAEEGYKEVTLLGQNVNSYHYTDADGTSVSFAELVDRVSRVSPEMRV 275 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY+TSHP+D +D L+K H D + Y+HLPVQ G+ +L M R +T EY + +R + Sbjct: 276 RYSTSHPKDCTDDLLKVHRDRPNVCNYIHLPVQHGNTEVLDRMRRTYTREEYLALTERAK 335 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382 + P +++S+D I GF GET+ T+ L++++ Y A+ FKYS R T + E V Sbjct: 336 ELCPGVSLSTDLIAGFCGETEAQHEDTLSLMEEVRYDHAYMFKYSERPQTYAARKYEDDV 395 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K RL + + + N+A VG++ VL+E K+ + GR+ + VV + Sbjct: 396 PEDTKQRRLEEIIELQNQHAKESNEAEVGRVHTVLVEGPSKKSDAQFFGRTDTNKGVVFD 455 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +++ GD ++VRI D STL G + Sbjct: 456 REDYEKGDYVRVRIEDCTSSTLLGTAI 482 >gi|315225572|ref|ZP_07867382.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga ochracea F0287] gi|314944516|gb|EFS96555.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga ochracea F0287] Length = 482 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 173/457 (37%), Positives = 259/457 (56%), Gaps = 22/457 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + GY +++DDADL+++NTC +REKA + + L Sbjct: 24 KKLYIESYGCQMNFSDSEIVASILSKAGYNTTDTVDDADLVLINTCSVREKAEQTIRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + K + + V V GC+A+ L IV++VVGP Y LP LLE Sbjct: 84 EQFNVYKRKKPA----MKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEEVE 139 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V+ S ++ + ++ + N GVTAF++I GCD CTFC+VP+TRG E S Sbjct: 140 EGREAVNVILSKDETYADIAPIRLNSN---GVTAFVSITRGCDNMCTFCIVPFTRGRERS 196 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251 R +++E L G E+TLLGQNV++ W G GL D K + F+ LL Sbjct: 197 RDPYSILNEIADLQARGFKEVTLLGQNVDSYLWYGGGLKKDFSKASEMQQATAINFAKLL 256 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++ + +R+R++TS+P+DM+ +I + Y+HLPVQSGS+RILK+MNR HT Sbjct: 257 DMVATAQPEMRIRFSTSNPQDMTLDVIDTMAKHPNICKYIHLPVQSGSNRILKAMNRLHT 316 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY +ID IR P+ AIS D I GFP ET+DD + T+ L++ + Y F F YS R Sbjct: 317 REEYFALIDSIRERIPECAISQDMIAGFPTETEDDHQDTLSLMEYVKYDFGFMFAYSERP 376 Query: 372 GTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429 GT + +E V E VK RL + ++ + A +G+ +EVLIE + K+ K + Sbjct: 377 GTLAARKIEDDVPEEVKKRRLAEIIDLQQKHSLYRTQAQIGKTVEVLIEGNSKKSDKEWM 436 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 GR+ VV +++ IGD + V+ITD +TL G+ Sbjct: 437 GRNSQNTVVVFPKEDYKIGDFVMVKITDCTSTTLIGK 473 >gi|258645507|ref|ZP_05732976.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM 15470] gi|260402861|gb|EEW96408.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM 15470] Length = 478 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 162/459 (35%), Positives = 266/459 (57%), Gaps = 20/459 (4%) Query: 17 IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 I+ + +++F+++YGCQMN D+ R+ GY + +DDAD+++LNTC IR+ A Sbjct: 32 ILKEVSFDKKYFIETYGCQMNESDTERISGQLEELGYVPADILDDADVVILNTCSIRQNA 91 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 EKVY +G ++ LK + +L+ +AGC+AQ +++ R P+++ V+GP + L Sbjct: 92 EEKVYGKIGEVKKLKGKK----PGVLLGIAGCMAQENKGKLIERMPVIDFVIGPYHIHDL 147 Query: 137 PELLER-ARFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 +++ R G VV T + V D E S+ RK + A++ I +GC+KFCT+ Sbjct: 148 KDIVSRRGAEGSHVVMTQMNPNRVNDYSELHSV------RKSRIFAWVPIMQGCNKFCTY 201 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLL 251 C+VPY RG E SR++ + E KL G EITLLGQNVN++ GLD T F L+ Sbjct: 202 CIVPYVRGRETSRTIDDICREIEKLAREGYKEITLLGQNVNSY---GLDFHDGTDFGSLI 258 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +++ +I G+ R+RY TSHP+DM+ ++ A ++ ++HLPVQ G++ IL+ MNR +T Sbjct: 259 HAIDKIDGIKRVRYMTSHPKDMTFGMVDAMAASPKVVRHMHLPVQHGANEILRRMNRGYT 318 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 +++++ +R P I +++D I GFPGET+D T+ L+ ++ + A++F YSPR Sbjct: 319 IERFKELLKYVREKMPGITVTTDLITGFPGETEDMHEETLTLLKEMKFDSAYTFIYSPRR 378 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVG 430 GTP + M QV + V RL + E +S N G++ V+ E K+ G Sbjct: 379 GTPAARMTNQVSDAVCHRRLQEIMNVENEISLSLNKEMEGKVYTVIAEGETKQNPDNWFG 438 Query: 431 RSPWLQSVVL-NSKNHNIGDIIKVRITDVKISTLYGELV 468 R+ + V+ + + ++GDI+KVR+ + L G +V Sbjct: 439 RTSGNKMVIFPKAGSLSVGDILKVRVDTAQTWILKGTIV 477 >gi|227549086|ref|ZP_03979135.1| tRNA 2-methylthioadenosine synthase [Corynebacterium lipophiloflavum DSM 44291] gi|227078868|gb|EEI16831.1| tRNA 2-methylthioadenosine synthase [Corynebacterium lipophiloflavum DSM 44291] Length = 512 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 161/455 (35%), Positives = 264/455 (58%), Gaps = 32/455 (7%) Query: 24 PQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P R + V+++GCQMNV+DS R+ M GY + DL+V NTC +R+ A +++Y Sbjct: 17 PARTYEVRTFGCQMNVHDSERLSGMLEEAGYVAAADGAEPDLVVFNTCAVRDNADQRLYG 76 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LG++++ K++ + + V GC+AQ + + ++ ++P V+ V G LP LL+R Sbjct: 77 SLGQLKHTKDNHP----GMQIAVGGCLAQKDRDTVIEKAPWVDAVFGTHNISALPALLDR 132 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 AR + + V + E V R+ +++I GC+ CTFC+VP RG E Sbjct: 133 ARVSE---EAQVEVVEALEVFPSVLPA-KRESSYAGWVSISVGCNNTCTFCIVPSLRGKE 188 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIK 258 + R ++ E L+ GV E+TLLGQNVNA+ +D E + FS LL + EI+ Sbjct: 189 LDRRPGDILAEVTALVQQGVSEVTLLGQNVNAYGVNFVDEELGRDRSAFSKLLRACGEIQ 248 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R+T+ HP + + +I A + + P LH+P+QSGSD++LK M R + + ++ I Sbjct: 249 GLERVRFTSPHPAEFTSDVIDAMAETPNVCPQLHMPLQSGSDKVLKDMRRSYRSKKFLGI 308 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +D +R+ P +I++D IVGFPGET++DF+AT+D+V+K + AF+F+YSPR GTP + M Sbjct: 309 LDEVRAKLPHASITTDIIVGFPGETEEDFQATLDVVEKARFTSAFTFQYSPRPGTPAATM 368 Query: 379 LEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGR 431 QV + V + ERL+ LQ+++ ++ N VG +E+L++ G +K ++ GR Sbjct: 369 DNQVPKEVVQERFERLVALQERISAEE---NAKLVGTEVELLVQAAGGKKNDSTKRMSGR 425 Query: 432 SPWLQSVVLNSKNHNI-------GDIIKVRITDVK 459 + +++ H + GDI+ V +TD K Sbjct: 426 A--RDGRLVHFAVHGLIDASVRPGDIVTVTVTDAK 458 >gi|78357421|ref|YP_388870.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123741239|sp|Q30YS1|MIAB_DESDG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|78219826|gb|ABB39175.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 464 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 179/467 (38%), Positives = 266/467 (56%), Gaps = 41/467 (8%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + ++GCQMNV DS + ++G+ +V +A + ++NTC +R+K +KVYS LGR Sbjct: 6 FHIMTFGCQMNVNDSDWLARALEARGFTQVPE-HEAAIYIINTCSVRDKPEQKVYSLLGR 64 Query: 87 IR-NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143 IR KN R ++ V V GCVAQ G+ +R V +V G P+ +ER Sbjct: 65 IRRETKNRR-----NVTVCVGGCVAQQIGKGFFKRFSQVRLVFGTDGAASAPQAIERLVQ 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R+ D+S E+ ER D G+ N + V+A++ I +GC+ FC +C+VPYTRG + Sbjct: 120 EPHARISLLDFS-EEFPER----DAGWENGEVPVSAYVNIMQGCNNFCAYCIVPYTRGRQ 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGL 260 SRS + V+DE R L+ NG EITLLGQNVN++ GLD G+ TF+ LL+ ++ I GL Sbjct: 175 KSRSSAAVLDECRTLVGNGAREITLLGQNVNSY---GLDPHGDGTTFARLLHDVAAIPGL 231 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR+ T HP+D++ +I+A G L L P +HLP+QSGSDR+LK+M R++ Y I+ Sbjct: 232 ERLRFMTPHPKDIAGEVIEAFGALKNLCPRVHLPLQSGSDRVLKAMGRKYDMARYMDIVT 291 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+++VRPDI I+SD IVGFPGET+ DF T++ + + + Q+FSF YS R GT + Sbjct: 292 RLKAVRPDIQITSDLIVGFPGETEADFEQTLEAMRTVPFVQSFSFIYSDRPGTRAEMLPG 351 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-------------------EKH 421 ++ K RL+ LQ+ E + A VG+ + VL E+ Sbjct: 352 KLSREEKTARLVRLQEVQNEYSEAALQAMVGKTVMVLFESPSPKSAAGSGTDAQNAAEES 411 Query: 422 GKEKGKLVGRSP--WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 G+ GR ++ +V L + G I+ V +T + +L GE Sbjct: 412 GRTASSWQGRDEHGFILNVHLPAPADLYGKIMPVTVTAARKHSLTGE 458 >gi|305681499|ref|ZP_07404306.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium matruchotii ATCC 14266] gi|305659704|gb|EFM49204.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium matruchotii ATCC 14266] Length = 531 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 161/449 (35%), Positives = 261/449 (58%), Gaps = 27/449 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + GY+ V + + DLIV NTC +RE A ++Y LG Sbjct: 31 YEVRTFGCQMNVHDSERLSGLLEDAGYQPVVAGNTPDLIVFNTCAVRENADMRLYGTLGS 90 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R++K + + V GC+AQ + + +++++P V+VV G LP LL+RA Sbjct: 91 LRSVKERH----PGMQIAVGGCLAQKDKDAVVKKAPWVDVVFGTHNIGSLPALLKRASHN 146 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + + D E+ V R+ ++++ GC+ CTFC+VP RG EI R Sbjct: 147 HQA---EVEIVDALEQFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEIDRR 202 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ++ E + L+D GV E+TLLGQNVNA+ L ++ FS LL + EI GL R Sbjct: 203 PGDILAEVQALVDQGVVEVTLLGQNVNAYGVNFADPDLPRDRSAFSRLLRACGEITGLER 262 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP + + +I A + + P LH+P+QSGSD++LK M R + ++ I+D + Sbjct: 263 VRFTSPHPAEFTSDVIDAMAETPTVCPQLHMPLQSGSDKVLKEMRRSYRTKKFLAILDEV 322 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P AI++D IVGFPGET++DF+AT+D+V+K + AF+F+YSPR GTP + +QV Sbjct: 323 RQKIPHAAITTDIIVGFPGETEEDFQATLDVVEKARFTSAFTFQYSPRPGTPAAEYEQQV 382 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRS--- 432 + V + ERL+ LQ+++ ++ N V +E+L++ G +K ++ GR+ Sbjct: 383 PKEVVQERYERLIALQERVCLEE---NQKLVNTEVELLVQADGGKKNAKTHRMTGRARDG 439 Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVK 459 + + S + +I GDII +T+ K Sbjct: 440 RLVHFHPVGSIDQSIRPGDIITTTVTEAK 468 >gi|253583333|ref|ZP_04860531.1| tRNA 2-methylthioadenosine synthase [Fusobacterium varium ATCC 27725] gi|251833905|gb|EES62468.1| tRNA 2-methylthioadenosine synthase [Fusobacterium varium ATCC 27725] Length = 436 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 159/441 (36%), Positives = 267/441 (60%), Gaps = 16/441 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV +S +++ +F + GYE +++++D I LNTC +RE AA ++Y LG ++++ Sbjct: 8 TYGCQMNVNESAKIKKIFQNIGYEITENIEESDAIFLNTCTVREGAATQIYGKLGELKHI 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFGKR 148 K R ++ + GC AQ +G+E+L++ P +++++G Q R+P+ ++ + K Sbjct: 68 KEKR-----GSIIGITGCFAQEQGKELLKKFPQIDIIMGNQNIGRIPQAIDDIEHKTNKH 122 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ TD ED E +D ++ K+ TA ++I GC+ FCT+C+VPY RG E S L Sbjct: 123 IIYTD--CED--ELPPRLDADFDSKK--TASISITYGCNNFCTYCIVPYVRGRERSVPLD 176 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +++ + ++ ++ G EI LLGQNVN++ +G+ F+ LL + +++G +R+ + Sbjct: 177 EIIHDVKQYVEKGYKEIILLGQNVNSYGKDFKNGD--NFAKLLEEICKVEGDFLVRFISP 234 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 HPRD SD +I D + LHLP+QSGS RILK MNR +T +Y + ++I+ P Sbjct: 235 HPRDFSDEVIDVIAKNDKIAKSLHLPLQSGSTRILKMMNRGYTKEQYIALAEKIKEKIPG 294 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A+++D IVGFPGET++DF T+D+V +I + +F F YS R GT ++M Q+D VK Sbjct: 295 VALTADIIVGFPGETEEDFLDTLDVVKRIQFENSFMFMYSIRQGTKAADMDNQIDSEVKK 354 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNI 447 ERL L + ++ ++ G+I+ +L+E K+ K L GR+ + V+ Sbjct: 355 ERLQRLIEVQNSCSLAESETYRGKIVRILVEGESKKNKDVLTGRTSTNKIVLFKGDKSLE 414 Query: 448 GDIIKVRITDVKISTLYGELV 468 G + V+I D K TLYG++V Sbjct: 415 GTFVNVKINDCKTWTLYGDIV 435 >gi|150003734|ref|YP_001298478.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacteroides vulgatus ATCC 8482] gi|294777449|ref|ZP_06742900.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides vulgatus PC510] gi|229890425|sp|A6KZJ2|MIAB_BACV8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|149932158|gb|ABR38856.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] gi|294448517|gb|EFG17066.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides vulgatus PC510] Length = 456 Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 167/451 (37%), Positives = 269/451 (59%), Gaps = 20/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++D+AD + +NTC IR+ A +K+ + L Sbjct: 18 KKLFIETYGCQMNVADSEVIASIMQMAGYHVCETLDEADAVFMNTCSIRDNAEQKILNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++K ++ + +L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 78 EFFHSMKKNKRR---NLIVGVLGCMAERVKDDLIENHH-VDLVVGPDAYLTLPDLVASVE 133 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FC +C+VPYTRG E Sbjct: 134 AGEKAINVELSTTETYREVIPSRICGNH-----ISGFVSIMRGCNNFCHYCIVPYTRGRE 188 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E R L D G E+TLLGQNVN++R + +GE TF LL +++E +R Sbjct: 189 RSRDVESILNEVRDLADKGYKEVTLLGQNVNSYRFEK-EGEIITFPMLLRTVAEAVPDMR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++T Y + + I Sbjct: 248 VRFTTSHPKDMSDETLQVIAETPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD +S+D G+ ET++D + ++ L+ + Y AF FKYS R GT S L + Sbjct: 308 RRIIPDCGLSTDIFSGYHSETEEDHQESLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N VG+ EV++E K + +L GR+ + Sbjct: 368 VPEEVKIRRLNEIIELQNRLSAES---NARDVGKTFEVMVEGVSKRSREQLFGRTQQNKV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + NH IGD + VRIT+ +TL GE V Sbjct: 425 VVFDRGNHRIGDFVHVRITEASSATLKGEEV 455 >gi|300858669|ref|YP_003783652.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Corynebacterium pseudotuberculosis FRC41] gi|300686123|gb|ADK29045.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Corynebacterium pseudotuberculosis FRC41] gi|302206376|gb|ADL10718.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Corynebacterium pseudotuberculosis C231] gi|302330932|gb|ADL21126.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Corynebacterium pseudotuberculosis 1002] gi|308276619|gb|ADO26518.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Corynebacterium pseudotuberculosis I19] Length = 512 Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 157/448 (35%), Positives = 261/448 (58%), Gaps = 25/448 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + GY V + DD DL+V NTC +RE A ++Y LG+ Sbjct: 17 YEVRTFGCQMNVHDSERLSGLLEDAGYSPVAAGDDPDLVVFNTCAVRENADMRLYGTLGQ 76 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R K R + + V GC+AQ + + +++++P V+VV G LP LL+RA Sbjct: 77 LRATKIERP----GMQIAVGGCLAQKDKDAVVKKAPWVDVVFGTHNIGSLPALLDRAEHN 132 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 R + D E+ V R+ ++++ GC+ CTFC+VP RG E+ R Sbjct: 133 NRA---QVEIVDSLEQFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEVDRR 188 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ++ E L++ GV E+TLLGQNVNA+ ++ ++ FS LL + +I+GL R Sbjct: 189 PGDILAEVHALVEQGVSEVTLLGQNVNAYGVNFADSSIERDRSAFSKLLRACGDIEGLDR 248 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+T+ HP + + +I A + + P LH+P+QSGSD++LK M R + + ++ I+D + Sbjct: 249 LRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDKVLKEMRRSYRSKKFLAILDEV 308 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P +I++D IVGFPGET++DF+AT+++V+K + A++F+YSPR GTP + Q+ Sbjct: 309 REKIPHASITTDIIVGFPGETEEDFQATLEVVEKARFTSAYTFQYSPRPGTPAAEYENQI 368 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLVGRSPWL 435 + V + ERLL LQ+++ ++ N +G +E+L++ G K +L GR+ Sbjct: 369 PKEVVQERYERLLELQERVSLEE---NQKLIGTEVELLVQTEGGRKNNKTNRLTGRARDG 425 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTL 463 + V + + G+I R D+ ++T+ Sbjct: 426 RLVHFSPEGSTDGEI---RPGDIIVTTV 450 >gi|224542096|ref|ZP_03682635.1| hypothetical protein CATMIT_01271 [Catenibacterium mitsuokai DSM 15897] gi|224525029|gb|EEF94134.1| hypothetical protein CATMIT_01271 [Catenibacterium mitsuokai DSM 15897] Length = 483 Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 166/448 (37%), Positives = 263/448 (58%), Gaps = 16/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q +++++YGCQ N D+ + + GY + + AD+++LNTC IRE A EKV+ + Sbjct: 44 QTYYIQTYGCQANERDTETLSGILEMMGYTHTDEVKQADVVLLNTCAIRENAEEKVFGKI 103 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++N+K +R +L+ V GC+AQ E +IL + P V+++ G +RLP LL++ Sbjct: 104 GYLKNIKKTR----PNLIFGVCGCMAQEEVVVNKILEKFPQVDLIFGTHNIHRLPVLLKQ 159 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K +V +S E D E L +R A++ I GC+KFCT+C+VPYTRG Sbjct: 160 AMLEKELVLEVWSKEGDVIENLP-----SHRANNYKAWVNIMYGCNKFCTYCIVPYTRGK 214 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L +++ E +L ++G EITLLGQNVN++ GK L+ F+ LL ++++ G+ Sbjct: 215 ERSRELEEIIKEVEELKNSGYKEITLLGQNVNSY-GKDLNN-GTDFATLLEAVAKT-GID 271 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP D + +I D +MP +HLPVQSG+D +L+ M RR++ Y ++ D Sbjct: 272 RIRFTTSHPWDFNADMIDIIAKYDNIMPSIHLPVQSGNDDVLQLMGRRYSKESYLKLFDM 331 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ PD +++D IVGFP ET++ F+ T+ L + Y A++F YSPR GTP + M + Sbjct: 332 IKEKIPDCTVTTDIIVGFPNETEEQFQDTLSLYNYCKYDLAYTFIYSPREGTPAAKMEDN 391 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V + K +RL L + + + N +GQ+++VL+E K+ L G + + + Sbjct: 392 VPLSDKEQRLYRLNELVNKYANEANQKYLGQVVKVLVEGPSKKNPDVLSGYTEHNKLINF 451 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +G I+ VR+T+ K L GE V Sbjct: 452 KGDASMVGQIVDVRVTEAKTWALTGEQV 479 >gi|311113252|ref|YP_003984474.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia dentocariosa ATCC 17931] gi|310944746|gb|ADP41040.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia dentocariosa ATCC 17931] Length = 505 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 159/450 (35%), Positives = 268/450 (59%), Gaps = 30/450 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ + V+++GCQMNV+DS RM + + GY R ++ DL+V NTC +RE A+ ++Y Sbjct: 16 TPRTYEVRTFGCQMNVHDSERMSGLLEANGYVRAAEGEEPDLVVFNTCAVRENASNRLYG 75 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LG++ ++K R EG + + V GC+AQ + I+ ++P V+VV G LP LLER Sbjct: 76 HLGQLASVK--RRHEG--MQIAVGGCLAQKDQNTIIEKAPWVDVVFGTHNIGSLPTLLER 131 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRG 200 AR + + E L + KR + +++I GC+ CTFC+VP RG Sbjct: 132 ARHNHE------AQAELLESLEVFPSTLPTKRDHVYSGWVSISVGCNNTCTFCIVPSLRG 185 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259 E R ++ E + L+D+G E+TLLGQNVN++ G++ G++ FS LL + +IKG Sbjct: 186 KEKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSY---GVEFGDRQAFSKLLRACGDIKG 242 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+T+ HP +D +I+A + +MP LH+P+QSGSD++LK M R + + ++ I+ Sbjct: 243 LERVRFTSPHPAMFTDDVIEAMAETPNVMPVLHMPLQSGSDKVLKDMRRSYRSKKFLGIL 302 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +++R P I++D IVGFPGE+++DF+ T+ +V++ ++ AF+F+YS R GTP + M Sbjct: 303 EKVRERIPHAVITTDIIVGFPGESEEDFQDTLRVVEQARFSSAFTFQYSIRPGTPAATME 362 Query: 380 EQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI----EKHGKEKGKLVGRS 432 Q+ ++V + ERL+ LQ ++ ++ N +G+ +E+++ + ++ +L GR Sbjct: 363 NQIPKDVVQERYERLVALQDRIAGEE---NHKQLGKTVELMVVAESGRKAQQTHRLAGRG 419 Query: 433 PWLQ----SVVLNSKNHNIGDIIKVRITDV 458 P + SV + GD++ V IT+ Sbjct: 420 PDQRLVHFSVPAGCEEPRPGDMVTVPITEA 449 >gi|152965467|ref|YP_001361251.1| RNA modification enzyme, MiaB family [Kineococcus radiotolerans SRS30216] gi|229890611|sp|A6W848|MIAB_KINRD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|151359984|gb|ABS02987.1| RNA modification enzyme, MiaB family [Kineococcus radiotolerans SRS30216] Length = 510 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 167/433 (38%), Positives = 249/433 (57%), Gaps = 33/433 (7%) Query: 19 DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD---------DADLIVLNT 69 D + + V+++GCQMNV+DS R+ + GY R + + D++V NT Sbjct: 13 DTVAAARTYQVRTFGCQMNVHDSERLSGLLEDAGYVRFDEAGRPEGSDAPVEPDVVVFNT 72 Query: 70 CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129 C +RE A K+Y LG + +K R + + V GC+AQ + EI+R++P V+VV G Sbjct: 73 CAVRENADNKLYGNLGHLAPVKERRPG----MQIAVGGCLAQKDRGEIVRKAPWVDVVFG 128 Query: 130 PQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188 LP LLERAR V+ S+E L R+ A+++I GC+ Sbjct: 129 THNVGSLPVLLERARHNAEAQVEILESLETFPSTLPT-----RRESPYAAWVSISVGCNN 183 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTF 247 CTFC+VP RG E R V+ E L+ GV E+TLLGQNVN + G++ G+K F Sbjct: 184 TCTFCIVPALRGKEKDRRPGDVLAEIEALVGEGVLEVTLLGQNVNTY---GVEFGDKLAF 240 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 LL + I+GL R+R+T+ HP +D ++ A + +MP LH+P+QSGSDR+LK+M Sbjct: 241 GKLLRATGGIEGLERVRFTSPHPSSFTDDVVDAMAETPNVMPSLHMPLQSGSDRVLKAMR 300 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + + IIDR+RS PD AI++D IVGFPGETD+DF T+ +V++ ++ AF+F+Y Sbjct: 301 RSYRQSRFLGIIDRVRSSIPDAAITTDIIVGFPGETDEDFEQTLHVVEQARFSSAFTFQY 360 Query: 368 SPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK 423 SPR GTP + M +Q+ + V + ERL LQ ++ + N A G+ +EVL+ E G+ Sbjct: 361 SPRPGTPAATMGDQIPKRVVQERYERLTALQDRITYED---NQAQTGRTLEVLVAEGEGR 417 Query: 424 EKG---KLVGRSP 433 + +L GR+P Sbjct: 418 KDAATRRLSGRAP 430 >gi|171909784|ref|ZP_02925254.1| hypothetical protein VspiD_01390 [Verrucomicrobium spinosum DSM 4136] Length = 455 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 168/457 (36%), Positives = 268/457 (58%), Gaps = 19/457 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++K+YGCQMN DS ++ MF +GY +AD++++NTC +R++A +K +G Sbjct: 3 KVYIKTYGCQMNERDSEQVSQMFIERGYTMTREEPEADVVLINTCSVRDQAEQKAIGKMG 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---R 142 +R + R ++ GC+AQ+ E+L+ + V++VVG Q Y+R+ E +E R Sbjct: 63 MLRKIHRQRTH----VVTGFMGCMAQSRAGELLKTAK-VDLVVGTQKYHRVVEYVEEIVR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYN---RKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 A+ +++ D +S+ D E S + + +++ +AF++I +GC+ CTFC+VPYTR Sbjct: 118 AKEARQMDDEKFSIVDVEEESSSQNAIRDHILKEKQASAFVSIMQGCNMKCTFCIVPYTR 177 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---DGEKCTFSDLLYSLSE 256 G E R ++++V+E R+L D G+ E+TLLGQ VN + DG K F LL + E Sbjct: 178 GGERGRPIAEIVEEVRRLADQGIKEVTLLGQIVNLYGRHEFPMKDG-KSPFVQLLEGVHE 236 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + G+ R+R+T+ HP LI A L L ++HLP+QSGSD ILK M+R ++A ++ Sbjct: 237 VPGIERIRFTSPHPIGYKSDLINAFTYLPKLAEHVHLPLQSGSDAILKKMHRPYSAAKFE 296 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++ RIR+ RP IA+S+D IVGFPGET++ ++ T L D++ + AF F+YS R GTP + Sbjct: 297 DLVARIRAARPGIAVSTDIIVGFPGETEEHYQETRALCDRVQFENAFIFRYSKRRGTPAA 356 Query: 377 NMLE--QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSP 433 M + Q+ E VK ER L + + + +G +E+L E K + +LVGR+ Sbjct: 357 EMDDALQLSERVKEERNQDLLALVNQHAQAKYVPLIGTKVEILCEGPSKTDASRLVGRTR 416 Query: 434 WLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELVV 469 + VV + G I V +TD TLYGE V+ Sbjct: 417 TNKIVVFEGPAERLTGQIFDVHVTDFANFTLYGEAVL 453 >gi|254881037|ref|ZP_05253747.1| SAM/TRAM family methylase [Bacteroides sp. 4_3_47FAA] gi|319640044|ref|ZP_07994771.1| hypothetical protein HMPREF9011_00368 [Bacteroides sp. 3_1_40A] gi|254833830|gb|EET14139.1| SAM/TRAM family methylase [Bacteroides sp. 4_3_47FAA] gi|317388322|gb|EFV69174.1| hypothetical protein HMPREF9011_00368 [Bacteroides sp. 3_1_40A] Length = 456 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 167/451 (37%), Positives = 269/451 (59%), Gaps = 20/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++D+AD + +NTC IR+ A +K+ + L Sbjct: 18 KKLFIETYGCQMNVADSEVVASIMQMAGYHVCETLDEADAVFMNTCSIRDNAEQKILNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++K ++ + +L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 78 EFFHSMKKNKRR---NLIVGVLGCMAERVKDDLIENHH-VDLVVGPDAYLTLPDLVASVE 133 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FC +C+VPYTRG E Sbjct: 134 AGEKAINVELSTTETYREVIPSRICGNH-----ISGFVSIMRGCNNFCHYCIVPYTRGRE 188 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E R L D G E+TLLGQNVN++R + +GE TF LL +++E +R Sbjct: 189 RSRDVESILNEVRDLADKGYKEVTLLGQNVNSYRFEK-EGEIITFPMLLRTVAEAVPDMR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++T Y + + I Sbjct: 248 VRFTTSHPKDMSDETLQVIAETPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD +S+D G+ ET++D + ++ L+ + Y AF FKYS R GT S L + Sbjct: 308 RRIIPDCGLSTDIFSGYHSETEEDHQESLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N VG+ EV++E K + +L GR+ + Sbjct: 368 VPEEVKIRRLNEIIELQNRLSAES---NARDVGKTFEVMVEGVSKRSREQLFGRTQQNKV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + NH IGD + VRIT+ +TL GE V Sbjct: 425 VVFDRGNHRIGDFVHVRITEASSATLKGEEV 455 >gi|226226860|ref|YP_002760966.1| hypothetical protein GAU_1454 [Gemmatimonas aurantiaca T-27] gi|226090051|dbj|BAH38496.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 451 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 167/430 (38%), Positives = 256/430 (59%), Gaps = 18/430 (4%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 ++++YGCQMNV DS M + GYE V++ D AD+I++NTC IRE A +V LG + Sbjct: 8 YIETYGCQMNVADSELMYGKLVAHGYEPVDAPDGADVILVNTCAIRENAETRVIGRLGEL 67 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 R D +V V GC+AQ G +L ++ V++VVGP Y LP LL+ AR G+ Sbjct: 68 RRYMKP------DTIVGVTGCMAQRLGPRVLEQARHVSLVVGPDGYRALPALLDGARRGE 121 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + TD+ +E+ +E D R GV A++ +Q GCD CT+C+VP+TRG E SR L Sbjct: 122 KFTATDFDLEEHYE-----DVVARRFEGVKAWIPVQRGCDYRCTYCIVPFTRGPERSRKL 176 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 VV E +++++ G+ E+ LLGQ VN++ DG F+DLL ++ + G+ R+RYT+ Sbjct: 177 DDVVREVQQVVEQGLSEVVLLGQTVNSY----TDGTH-DFADLLRAVGAVDGIRRVRYTS 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 HP D SD +I A + + ++HLP+QSGS +LK M RR++ EY + R+R+ P Sbjct: 232 PHPNDFSDRVIDAMASVATVCEHIHLPMQSGSTSMLKRMLRRYSREEYLDCVARMRAAIP 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--VDEN 385 +++++D IVGFPGETD +F T+ L ++ + AF FK+SPR GTP + M + ++ Sbjct: 292 GLSLTTDIIVGFPGETDAEFEDTLSLCQEVRFDDAFMFKFSPREGTPATRMPADWTIPDD 351 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 V A R L K +R N +G +EVLIEK ++ RS ++V++ + Sbjct: 352 VMAARFDRLVKTVRGISRENNLKRLGDTVEVLIEKLARDGELWQARSRDFKTVMVPADAG 411 Query: 446 NIGDIIKVRI 455 IGD ++V++ Sbjct: 412 KIGDYLRVQL 421 >gi|229891226|sp|Q0IC70|MIAB_SYNS3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 473 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 179/456 (39%), Positives = 270/456 (59%), Gaps = 25/456 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM + + GY+ N+ DADL++ NTC IR+ A +KVYS+LGR Sbjct: 29 YWITTFGCQMNKADSERMAGILETMGYQEANAELDADLVLYNTCTIRDNAEQKVYSYLGR 88 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + +L +VVAGCVAQ EGE +LRR P +++V+GPQ RL LL + + G Sbjct: 89 ----QAIRKRTNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLTQVQAG 144 Query: 147 KRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++VV T D+ + E L+ R A++ + GC++ CT+CVVP RG E SR Sbjct: 145 QQVVATEDHHI---LEDLTTA----RRDSSTCAWVNVIYGCNERCTYCVVPSVRGKEQSR 197 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKG 259 ++ E L G EITLLGQN++A+ G+ L G + T +DLL+ + +++G Sbjct: 198 LPESILLEMEGLAARGFKEITLLGQNIDAY-GRDLPGITAEGRRQHTLTDLLHQVHDVEG 256 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + RLR+ TSHPR ++ LI A DL + + H+P QSG + +LK+M R +T YR+II Sbjct: 257 IERLRFATSHPRYFTERLIDACADLPKVCEHFHIPFQSGDNELLKAMARGYTVERYRRII 316 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 DRIR PD AIS+D IV FPGETD +R T+ L+++IG+ Q + YSPR TP ++ Sbjct: 317 DRIRKRMPDAAISADVIVAFPGETDAQYRRTLALIEEIGFDQVNTAAYSPRPNTPAADWN 376 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSV 438 Q+ E VK RL + + N G+I +VL E + K+ +L+GR+ + Sbjct: 377 NQLSEEVKVARLQEINALVESTAKERNARYAGRIEQVLAEGMNPKDPSQLMGRTRTNRLT 436 Query: 439 VLNSKN-----HNIGDIIKVRITDVKISTLYGELVV 469 ++++ H GD++ VRI V+ +L G V+ Sbjct: 437 FFSAESPQGITHRAGDLVDVRIDQVRSFSLTGTPVI 472 >gi|332292317|ref|YP_004430926.1| RNA modification enzyme, MiaB family [Krokinobacter diaphorus 4H-3-7-5] gi|332170403|gb|AEE19658.1| RNA modification enzyme, MiaB family [Krokinobacter diaphorus 4H-3-7-5] Length = 483 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 173/461 (37%), Positives = 268/461 (58%), Gaps = 29/461 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGCQMN DS + + ++GY +++ADL+++NTC IREKA V L Sbjct: 24 KKLFIESYGCQMNFADSEVVASILANEGYNTTQILEEADLVLVNTCSIREKAEVTVRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + + +K K+ ++ V V GC+A+ + L IV++VVGP Y +P LL Sbjct: 84 EKYQAVKR---KQNPNMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDIPNLLSEVE 140 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V+ S E+ + +S V N GVTAF++I GCD CTFCVVP+TRG E S Sbjct: 141 EGRNAVNVILSKEETYGDISPVRLLTN---GVTAFVSITRGCDNMCTFCVVPFTRGRERS 197 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251 R +++E + L + G EITLLGQNV++ W G GL D +K + F+ L+ Sbjct: 198 RDPQSILEEVQDLAEKGFKEITLLGQNVDSYLWYGGGLKKDFDKASEMAKATAVNFAQLM 257 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++++ + +R+R++TS+P+DM+ +I+ + Y+HLPVQSGSDRIL+ MNR+HT Sbjct: 258 DTVAKAQPKMRIRFSTSNPQDMTLDVIEVMAKHKNVCNYIHLPVQSGSDRILQLMNRQHT 317 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY+ +ID I+++ P I IS D I GFP ET++D + T+DL++ + Y F F YS R Sbjct: 318 VAEYKTLIDNIKNLIPHIGISQDMITGFPTETEEDHQGTLDLINYVKYDFGFMFYYSERP 377 Query: 372 GTPGSNMLE-QVDENVKAERL---LCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKE-K 425 GT +E + +K RL + LQ+ + R+ + + D Q +E+LIEK K+ K Sbjct: 378 GTMAERKMEDDIPLAIKKRRLQDVIDLQRAISRDNLLRYQD----QTVEILIEKESKKNK 433 Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 + GR+ V ++ +GD + V+I + TL GE Sbjct: 434 DEWSGRNDQNVVAVFPKGDYKVGDFVNVKINECTTGTLIGE 474 >gi|324997385|ref|ZP_08118497.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudonocardia sp. P1] Length = 492 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 168/441 (38%), Positives = 255/441 (57%), Gaps = 27/441 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+D+ RM + GY R D AD++V NTC +RE A K+Y LG Sbjct: 5 YTVRTYGCQMNVHDTERMAGLLEQAGYARAEDPDAADVVVFNTCAVRENADNKLYGNLGH 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R K + D+ + V GC+AQ + + I R++P V+VV G + LP LLERAR Sbjct: 65 LRPRKQANP----DMQIAVGGCLAQKDRDTITRKAPWVDVVFGTHNVHALPTLLERARHN 120 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + V+ S+E L R+ +++I GC+ CTFC+VP RG E R Sbjct: 121 ETAEVEIAESLEVFPSTLPA-----RRESAYAGWVSISVGCNNTCTFCIVPALRGKERDR 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 V+ E L GV E+TLLGQNVNA+ G D G++ FS LL + ++GL R+R Sbjct: 176 RPGDVLAEVEALAAEGVLEVTLLGQNVNAY---GQDMGDREAFSKLLRACGGVEGLERVR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HPRD + +I A + + P LH+P+QSGSD +L+ M R + + + +I+ +R Sbjct: 233 FTSPHPRDFTSDVIAAMAETPNVCPQLHMPLQSGSDAVLRRMRRSYRSDRFLRILSDVRE 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P AIS+D IVGFPGET++DF+AT+D+V ++QAF+F+YSPR GTP ++M Q+ + Sbjct: 293 SIPHAAISTDIIVGFPGETEEDFQATLDVVAAARFSQAFTFQYSPRPGTPAADMDGQLPK 352 Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRS---PW 434 V + ERL+ LQ+++ ++ N A G+ +E+L+ K +L GR+ Sbjct: 353 KVVQERYERLVALQEEISWEE---NRAQEGREVELLVSTGEGRKDDATRRLTGRARDGRL 409 Query: 435 LQSVVLNSKNHNIGDIIKVRI 455 + ++ GD++ VRI Sbjct: 410 VHFAPGDATGIRPGDLVTVRI 430 >gi|260683603|ref|YP_003214888.1| putative radical sam protein [Clostridium difficile CD196] gi|260687263|ref|YP_003218397.1| putative radical sam protein [Clostridium difficile R20291] gi|260209766|emb|CBA63567.1| putative radical sam protein [Clostridium difficile CD196] gi|260213280|emb|CBE04822.1| putative radical sam protein [Clostridium difficile R20291] Length = 429 Score = 292 bits (748), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 167/439 (38%), Positives = 268/439 (61%), Gaps = 18/439 (4%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN +DS ++ M GY+ ++++DLI+ NTC +RE A KVY LG++++LK Sbjct: 1 MNEHDSEKLCSMLEEMGYQMSMMVEESDLIIYNTCAVRENAELKVYGNLGQLKHLKG--- 57 Query: 96 KEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVDT 152 + D+ + V GC+ Q EE+ ++ V+++ G Y+ P+LL E K +VD Sbjct: 58 -KNPDMKIAVCGCMMQQPHVVEELRKKYKHVDLIFGTHNLYKFPQLLTESINSDKMLVDV 116 Query: 153 DYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211 + V+ + +++G NRK + AF+ I GC+ FCT+C+VPYTRG E SR+ ++ Sbjct: 117 -WDVDGE-----VIEGLRSNRKFELKAFVNIMYGCNNFCTYCIVPYTRGRERSRTPEDII 170 Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271 +E ++L+ NG EITLLGQNV+++ GK L+ +FS+LL +++I+G+ R+R+ TSHP+ Sbjct: 171 NEIKELVANGTKEITLLGQNVDSY-GKTLEN-PVSFSELLRKVNDIEGIERVRFMTSHPK 228 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 D+SD +I A D D + +LHLP+Q GS +LK MNR +T Y +II++ + P IA Sbjct: 229 DISDEVIYAIRDCDKVCEFLHLPIQCGSSSLLKKMNRHYTKEYYLEIIEKAKKEVPGIAF 288 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391 S+D ++GFPGET++D T+D+V+K+ Y AF+F YS R GTP + M Q+ E++K +R Sbjct: 289 STDLMIGFPGETEEDLLDTLDVVEKVRYDSAFTFIYSKRQGTPAAKMENQIPEDIKHDRF 348 Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHN-IGD 449 + + + ND +I+EVL+E K + K GR+ + V N + IG Sbjct: 349 NRVLEAVNRISAEINDGYKDRIVEVLVEGRSKNNENKFAGRTRQNKLVNFEGGNDDLIGK 408 Query: 450 IIKVRITDVKISTLYGELV 468 ++ V+IT+ + +L G LV Sbjct: 409 LVMVKITEPRTFSLNGILV 427 >gi|88855436|ref|ZP_01130100.1| hypothetical protein A20C1_01396 [marine actinobacterium PHSC20C1] gi|88815343|gb|EAR25201.1| hypothetical protein A20C1_01396 [marine actinobacterium PHSC20C1] Length = 514 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 168/460 (36%), Positives = 270/460 (58%), Gaps = 31/460 (6%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 M I ++ P+ + V++YGCQMNV+DS R+ + GY R + AD++V+NTC + Sbjct: 1 MEDMIDEKLATPRSYEVRTYGCQMNVHDSERLSGSLEAAGYIRA-TKGQADVVVINTCAV 59 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 RE A K+Y LG + ++K R EG + + V GC+AQ + IL ++P V+VV G Sbjct: 60 RENADNKLYGNLGMLASVK--REHEG--MQIAVGGCLAQKDKNVILEKAPWVDVVFGTHN 115 Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFC 190 LP LLERAR + + + E L + +R T A+++I GC+ C Sbjct: 116 MGSLPTLLERARHNEE------AQLEILESLDVFPSTLPTRRESTHSAWVSISVGCNNTC 169 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSD 249 TFC+VP RG E R ++ E + ++D+G EITLLGQNVN++ G++ G++ FS Sbjct: 170 TFCIVPALRGKEKDRRAGDILSEVQAIVDDGAIEITLLGQNVNSY---GVEFGDRQAFSK 226 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL + I GL R+R+T+ HP +D +I A + +MP LH+P+QSGSDRILK+M R Sbjct: 227 LLRATGAIDGLERVRFTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDRILKAMRRS 286 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + + ++ I++R+R+ P AIS+D IVGFPGET++DF T+ +V++ +A A++F+YS Sbjct: 287 YRSTKFLGILERVRAQMPHAAISTDIIVGFPGETEEDFAETLRVVEEARFASAYTFQYSI 346 Query: 370 RLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHG 422 R GTP + M +Q+ + + + ERL LQ ++ ++ N+ VG+ ++V++ + Sbjct: 347 REGTPAATMEDQIPKEIVQERYERLAALQDRISREE---NEKQVGRTVQVMVTATEGRKQ 403 Query: 423 KEKGKLVGRSPWLQSVVLN----SKNHNIGDIIKVRITDV 458 E +L GR+ + V N S GD++ + I++ Sbjct: 404 AETDRLSGRAEDSRLVHFNVPEASPVPRPGDVVTLTISEA 443 >gi|83815966|ref|YP_446673.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salinibacter ruber DSM 13855] gi|83757360|gb|ABC45473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salinibacter ruber DSM 13855] Length = 572 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 163/447 (36%), Positives = 262/447 (58%), Gaps = 9/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GY AD+++LNTC IRE A K+ + L Sbjct: 111 KQVYIETYGCQMNVNDSGIVASVLEESGYGLTRDQAAADVVLLNTCAIRENAERKIRARL 170 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143 +R+ K R G+L++ V GC+A+ E++L + +V+VVVGP Y LP+LL E Sbjct: 171 SMLRSEKEKR---DGELMLGVLGCMAERLREKLLEQEDLVDVVVGPDAYRDLPQLLYEAD 227 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+ V+ + S ++ +E + V N GV+A+++I GCD CTFCVVP+TRG E Sbjct: 228 ATGQAAVNVELSKQETYEDIQPVRYDSN---GVSAYVSIMRGCDNMCTFCVVPFTRGREE 284 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ ++ E +L + G E+TLLGQNVN++ DG +F++L+ +S + +R+ Sbjct: 285 SRPVTTILSEVARLAEEGYKEVTLLGQNVNSYHYTDADGTSVSFAELVDRVSRVSPEMRV 344 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY+TSHP+D +D L+K H D + Y+HLPVQ G+ +L M R +T EY + +R + Sbjct: 345 RYSTSHPKDCTDDLLKVHRDRPNVCNYIHLPVQHGNTEVLDRMRRTYTREEYLALTERAK 404 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382 + P +++S+D I GF GET+ T+ L++++ Y A+ FKYS R T + E V Sbjct: 405 ELCPGVSLSTDLIAGFCGETEAQHEDTLSLMEEVRYDHAYMFKYSERPQTYAARKYEDDV 464 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K RL + + + N+A VG++ VL+E K+ + GR+ + VV + Sbjct: 465 PEDTKQRRLEEIIELQNQHAKESNEAEVGRVHTVLVEGPSKKSDAQFFGRTDTNKGVVFD 524 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +++ GD ++VRI D STL G + Sbjct: 525 REDYEKGDYVRVRIEDCTSSTLLGTAI 551 >gi|28493577|ref|NP_787738.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Tropheryma whipplei str. Twist] gi|81437721|sp|Q83FT9|MIAB_TROWT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|28476619|gb|AAO44707.1| unknown [Tropheryma whipplei str. Twist] Length = 470 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 161/416 (38%), Positives = 254/416 (61%), Gaps = 25/416 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS R+ + +GY + S DDAD++VLNTC +RE A + Y LG+ Sbjct: 3 YTVRTYGCQMNVHDSERIAGVLEDEGYVKSGS-DDADVVVLNTCAVRENADNRFYGNLGQ 61 Query: 87 IRNLKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + KN+ RI++ + V GC+AQ + +I ++P V+VV G LP LL R+R Sbjct: 62 LLQKKNNGRIRQ-----IAVGGCLAQKDRHKIFEKAPWVDVVFGTHNLGSLPALLRRSRH 116 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 K + ++D E R+ +A+++I GC+ CTFC+VP RG E R Sbjct: 117 NK---TAEIEIKDFLETFP-SSLPVRRESNYSAWVSISVGCNNTCTFCIVPSLRGKERDR 172 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 ++ E L+ GV E+TLLGQNVN + G++ G++ F+ LL I+GL RL+ Sbjct: 173 RPGDILAEISALVSEGVLEVTLLGQNVNTY---GVEFGDRSAFASLLRKAGAIEGLERLK 229 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP + +I A D ++P LH+P+QSGSDRIL++M R + A ++ +II R+ Sbjct: 230 FTSPHPAAFTSDVIDAMHDTQAVLPQLHMPLQSGSDRILRAMRRSYRAGKFLKIISEARN 289 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+IAI++D IVGFPGET++DF+ T++LV ++ +A AF+F+YSPR GTP ++M Q+ Sbjct: 290 KIPNIAITTDIIVGFPGETEEDFQDTLNLVAEVRFASAFTFQYSPRPGTPAASMPNQIPG 349 Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL----VGRSP 433 ++ + ERLL LQ ++ ++ N +G+ +E+L+ G++ L GR+P Sbjct: 350 DIVQERYERLLDLQNRIALEE---NRKLIGKEVELLVTVGGRKDSMLDNRYTGRTP 402 >gi|226306246|ref|YP_002766206.1| tRNA-thiotransferase [Rhodococcus erythropolis PR4] gi|226185363|dbj|BAH33467.1| putative tRNA-thiotransferase [Rhodococcus erythropolis PR4] Length = 515 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 150/409 (36%), Positives = 238/409 (58%), Gaps = 13/409 (3%) Query: 15 SQIVDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 + + + P R + V++YGCQMNV+DS R+ + GY + + D DL+V NTC +R Sbjct: 9 TAVPEATATPVRTYEVRTYGCQMNVHDSERLSGLLEDAGYSKAETGTDPDLVVFNTCAVR 68 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133 E A K+Y L ++ K + D+ + V GC+AQ + + +++++P V+VV G Sbjct: 69 ENADNKLYGNLSQLAPNKEANP----DMQIAVGGCLAQKDRDTVVKKAPFVDVVFGTHNI 124 Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193 LP LL+RAR +R + + D E R+ +++I GC+ CTFC Sbjct: 125 GSLPALLDRARHNQRA---EVEILDALEAFPSTLPA-KRESAYAGWVSISVGCNNTCTFC 180 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSD 249 +VP RG E+ R ++ E + L+D GV E+TLLGQNVNA+ D E + F+ Sbjct: 181 IVPALRGKEVDRRPGDILAEVQALVDEGVSEVTLLGQNVNAYGVSFADPEQPRDRGAFAS 240 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL + I GL R+R+T+ HP + +D +I+A + P LH+P+QSGSD++LK+M R Sbjct: 241 LLKACGHIDGLERVRFTSPHPAEFTDDVIEAMATTPNVCPQLHMPLQSGSDKVLKAMKRS 300 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + +Y II+++R+ P AI++D IVGFPGET++DF+ T+D+V K ++ A++F+YS Sbjct: 301 YRKSKYLGIIEKVRAAMPHAAITTDIIVGFPGETEEDFQETLDVVRKARFSNAYTFQYSK 360 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 R GTP + M +Q+ + V ER + L E + N VG +E+L+ Sbjct: 361 RPGTPAAEMADQLPKEVVQERYMRLLAVQEEVNIEENRKLVGTEVELLV 409 >gi|312195023|ref|YP_004015084.1| RNA modification enzyme, MiaB family [Frankia sp. EuI1c] gi|311226359|gb|ADP79214.1| RNA modification enzyme, MiaB family [Frankia sp. EuI1c] Length = 550 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 165/410 (40%), Positives = 245/410 (59%), Gaps = 20/410 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + S GY V++ + DL+V NTC +RE A ++Y LG Sbjct: 5 YQVRTFGCQMNVHDSERISGLLESAGYVPVDAGETPDLVVFNTCAVRENADNRLYGNLGH 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + K ++ + + V GC+AQ + I R++P V+VV G +RLP LLERAR Sbjct: 65 LYPTK----RDNPGMQIAVGGCLAQKDRGTITRKAPWVDVVFGTHNLHRLPVLLERARH- 119 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + VE E L + +R +A+++I GCD CTFC+VP RG E Sbjct: 120 ----NAEAQVEIA-EALEVFPSTLPARRASHASAWVSISVGCDNTCTFCIVPSLRGKERD 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R V+ E L+ +G E+TLLGQNVN++ G+ G+ F+ LL + I+GL R+R Sbjct: 175 RRPGDVLAEVEALVADGAVEVTLLGQNVNSY-GRSF-GDPGAFAKLLRACGRIEGLERVR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HPRD +D +I A + + P LH+P+QSGSD +L+ M R + Y I++R+R+ Sbjct: 233 FTSPHPRDFTDDVIAAMAETPNVCPSLHMPMQSGSDEVLRRMRRSYRRDRYLGIVERVRA 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD AI++D IVGFPGET+ DF T+D+V + ++ AF+F+YSPR GTP + M EQV Sbjct: 293 ALPDAAITTDIIVGFPGETERDFLDTLDVVGQARFSGAFTFQYSPRPGTPAATMDEQVPP 352 Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 V AE RL+ LQ E ++ N A VG+ +EVL+ + K + GR Sbjct: 353 AVVAERYGRLVALQD---EVSLAENRAQVGRTVEVLLAEGEGRKDESTGR 399 >gi|303232055|ref|ZP_07318758.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica ACS-049-V-Sch6] gi|302513161|gb|EFL55200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica ACS-049-V-Sch6] Length = 438 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 161/447 (36%), Positives = 256/447 (57%), Gaps = 17/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++ +YGCQMN DS R+ + GY + ++ ADLI+LNTC +RE A KV+ + Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLETVGYIPTDDVELADLILLNTCAVRETAETKVFGRI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143 G ++ LK ++ +L++ + GC+AQ E+ +R+P +++V+G + E++ E Sbjct: 62 GELKRLK----QKNKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQ 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R K ++ D E + +G + A++ I GC+KFCT+C+VP+ RG EI Sbjct: 118 RTHKHQINVDMDNTVLPELQAKPNGTF------FAWVPIMNGCNKFCTYCIVPHVRGREI 171 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVR 262 SR + +V E +L G EITLLGQNVN++ GLD + T F L+ +L I G+ R Sbjct: 172 SRPVEAIVKEVTELGAKGFKEITLLGQNVNSY---GLDFKDGTDFGTLVDALDHIPGIER 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RY TSHP+DM+ +I A G ++ +LHLP+QSGSDRILK MNR +T Y++++ Sbjct: 229 IRYMTSHPQDMTKSMIDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYC 288 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R ++ +++D IVGFPGET++DF T+ L+ + Y A++F YS R GTP + M EQV Sbjct: 289 REKIKNVVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQV 348 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN 441 E VK RL L E + N G++ ++++E K++ GR+ + V+ Sbjct: 349 PEEVKRVRLQQLMDIQNEISLELNKTMEGKVFDIIVEGPSAKDETMWFGRTSGNKMVLFP 408 Query: 442 SKNH-NIGDIIKVRITDVKISTLYGEL 467 + IGD + I + YG + Sbjct: 409 KDDELTIGDTVPAYIDKAQTWVCYGTI 435 >gi|193214302|ref|YP_001995501.1| RNA modification enzyme, MiaB family [Chloroherpeton thalassium ATCC 35110] gi|229890479|sp|B3QVA0|MIAB_CHLT3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|193087779|gb|ACF13054.1| RNA modification enzyme, MiaB family [Chloroherpeton thalassium ATCC 35110] Length = 451 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 170/450 (37%), Positives = 260/450 (57%), Gaps = 20/450 (4%) Query: 21 CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 C R ++++YGCQMN D+ + + GY S AD+I LNTC +RE A +++ Sbjct: 14 CNQKARVYLETYGCQMNFSDTEIISSILSDAGYAIAESEQVADIIFLNTCAVRENAEQRI 73 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 + L +R LK K+ L+V V GC+A+ E++ + IV+++ GP Y LP LL Sbjct: 74 RNRLQNLRPLK----KQNPKLIVGVLGCMAERLREKLFQEEKIVDLIAGPDAYRTLPNLL 129 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + A G++ + S+E+ + ++ + RK G +AFL I GCD C FC+VPYTRG Sbjct: 130 DLAESGEKAANVMLSLEETYADINPL-----RKNGHSAFLAIMRGCDNMCAFCIVPYTRG 184 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR ++ ++DE ++L D G E+TLLGQNVN++ + F++L+ S + Sbjct: 185 RERSRPMTSILDELKQLSDEGTREVTLLGQNVNSYYD---ENSGTRFANLMDKASLVNPN 241 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R+R+TTSHP+D+S LI + L ++HLPVQSGS R+L+ MNR HT +Y + I Sbjct: 242 MRIRFTTSHPKDISSELIDVIAERKNLCEFIHLPVQSGSSRMLELMNRGHTREDYLEKIA 301 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379 I+S P+ +IS+D I GF ET+ D AT+ L+ ++ Y AF+F YS R TP + L Sbjct: 302 LIKSKIPNCSISTDMISGFCTETEADHAATLSLLREVRYDYAFTFVYSVRPNTPAATRLN 361 Query: 380 EQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWL 435 + V ++VK RL + LQ+K+ ++ ND +G EVLIE K + +GR+ Sbjct: 362 DDVPDDVKQRRLSEVIALQQKI-SAELYRND--IGNTHEVLIEGESKRSSDMWMGRARNN 418 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 + VV +GD + V+ITD +TL G Sbjct: 419 RVVVFPKNGAQVGDFVNVKITDATSATLIG 448 >gi|332799273|ref|YP_004460772.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Tepidanaerobacter sp. Re1] gi|332697008|gb|AEE91465.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Tepidanaerobacter sp. Re1] Length = 437 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 174/453 (38%), Positives = 272/453 (60%), Gaps = 28/453 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++ + ++GCQMN++DS + + GY +++ ++D+I+LNTC +RE A KVY G Sbjct: 2 KYKILTWGCQMNIHDSEIISGVMQKMGYCPADTLQESDVIILNTCCVRENAERKVY---G 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143 RI LK + K +L++ V+GC+ Q E I + P V+++ G + ++LPEL+E Sbjct: 59 RIAQLKQFKSK-NPNLILAVSGCMVQQPHVVEYISEKLPYVDILFGIKNVHKLPELIEST 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201 R T+ V D S++D K A++TI GC+ +C++C+VPY RG Sbjct: 118 R------QTNLPVID-ISGDSMIDENLPIKHTNDAKAWVTITYGCNNYCSYCIVPYVRGK 170 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E L +NG EI LLGQNVN++ GK L+ TF +LL ++++ G+ Sbjct: 171 EVSRRPDDILREIETLANNGFIEINLLGQNVNSY-GKDLNI-PVTFPELLRRVNDVDGIK 228 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D+S+ LI A D + ++HLPVQSGS++IL MNR++T Y ++I + Sbjct: 229 RIRFITSHPKDLSNELILAMRDCKKVCEHIHLPVQSGSNQILSKMNRKYTREHYIELIYK 288 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P+IAI++D IVGFPGET+ DF T++LV + + AF+F YS R GTP + M +Q Sbjct: 289 LRDAIPNIAITTDIIVGFPGETEKDFLDTLELVKAVEFDSAFTFMYSKRKGTPAAKMADQ 348 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGRSPWL 435 +D ++K + RL+ LQ + E S N+ G I EVL+E G KG +L GRS Sbjct: 349 IDNDIKKDRLNRLMQLQDAITE---SKNNRLKGTIQEVLVE--GVSKGNINRLSGRSRTN 403 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V + IG ++ V+I + +L GE+V Sbjct: 404 KLVNFDGSEKLIGKLVNVKIIEPHTWSLLGEIV 436 >gi|116670023|ref|YP_830956.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arthrobacter sp. FB24] gi|229890444|sp|A0JUY6|MIAB_ARTS2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|116610132|gb|ABK02856.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arthrobacter sp. FB24] Length = 522 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 168/449 (37%), Positives = 268/449 (59%), Gaps = 32/449 (7%) Query: 25 QRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 QR + V+++GCQMNV+DS RM M GY S ++AD++V NTC +RE A K+Y Sbjct: 27 QRTYQVRTFGCQMNVHDSERMAGMLEDAGYVPA-SGENADVVVFNTCAVRENADNKLYGN 85 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K + + + V GC+AQ + E IL+++P V+ V G LP LL+RA Sbjct: 86 LGMLAPVKAA----NPGMQIAVGGCLAQKDRETILKKAPWVDAVFGTHNVGALPALLDRA 141 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201 R + + + E L + KR + +++I GC+ CTFC+VP RG Sbjct: 142 RH------NNEAQLEILESLDVFPSTLPTKRDSVYSGWVSISVGCNNTCTFCIVPALRGK 195 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 E R ++ E + L+D+G E+TLLGQNVN++ G++ G++ FS LL + EI+GL Sbjct: 196 EKDRRPGDILAEIQALVDDGAIEVTLLGQNVNSY---GVEFGDRQAFSKLLRACGEIQGL 252 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP +D +I A + +MP LH+P+QSGSD++LK M R + + ++ I+D Sbjct: 253 ERVRFTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDKVLKDMKRSYRSTKFLGILD 312 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R P AIS+D IVGFPGET++DF+AT+D+V+K +A AF+F+YS R GTP +++ + Sbjct: 313 KVRERIPHAAISTDIIVGFPGETEEDFQATLDVVEKSRFATAFTFQYSKRPGTPAADLPD 372 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSP 433 Q+ + V + ERL LQ ++ ++ N +G+ +EV++ + +E +L GRS Sbjct: 373 QLPKAVVQERFERLTALQDRIAAEE---NARQLGRRVEVMVTAQSGRKSEETHRLSGRSQ 429 Query: 434 WLQ----SVVLNSKNHNIGDIIKVRITDV 458 + SV ++ GD++ V IT+ Sbjct: 430 DQRLVHFSVPEGAEKPRPGDLVTVTITEA 458 >gi|225018519|ref|ZP_03707711.1| hypothetical protein CLOSTMETH_02466 [Clostridium methylpentosum DSM 5476] gi|224948720|gb|EEG29929.1| hypothetical protein CLOSTMETH_02466 [Clostridium methylpentosum DSM 5476] Length = 496 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 175/445 (39%), Positives = 258/445 (57%), Gaps = 20/445 (4%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 ++YGCQ NV D ++ + GYE + D+AD I+ NTC +RE A ++V+ +G + Sbjct: 43 TRTYGCQANVADGEKIRGILHEIGYEFTDEPDEADFILFNTCAVRENAEDRVFGNIGALA 102 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA-RF 145 +LK KE +L++ V GC+ Q E E+I + P V +V G +RLPEL+ RA Sbjct: 103 HLK----KENPNLIIAVCGCMMQQEHIVEKIRKSYPYVGLVFGTHVVHRLPELVYRALTE 158 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 KRV D+ S E L +V R+ G A+L I GC+ FCT+C+VPY RG E SR Sbjct: 159 HKRVFDSTQSDGVIAEDLPVV-----REEGSKAWLPIMYGCNNFCTYCIVPYVRGRERSR 213 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ EAR+L+ +G EITLLGQNVN++ GK L + FS LL +++I G R+R+ Sbjct: 214 EPDAILREARQLVADGYKEITLLGQNVNSY-GKNLP-QPIRFSQLLRMINDIPGDFRIRF 271 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TSHP+D + LI D D + +LHLPVQ GSD IL+ MNR +T +Y ++++ + Sbjct: 272 MTSHPKDATRELIDTIADCDKVCNHLHLPVQCGSDEILRRMNRGYTCEQYLELVEYAKKR 331 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P +++SSD IVGFPGET ++F+ T+ L++ +GY ++F YS R+GT +N + VD Sbjct: 332 IPGLSLSSDIIVGFPGETYENFQGTLKLIEAVGYDLLYTFIYSKRVGTKAANYDDPVDPK 391 Query: 386 VKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 K+ LL +Q K+ + +F + VGQ VL++ GK++G L GR V Sbjct: 392 EKSRWFRELLEVQAKI--GRANF-EGYVGQTARVLVDGTGKKEGMLTGRDEHNILVEFEG 448 Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467 IG V+IT + L G L Sbjct: 449 PPALIGSFADVKITQAHQAALVGSL 473 >gi|307109122|gb|EFN57360.1| hypothetical protein CHLNCDRAFT_30275 [Chlorella variabilis] Length = 524 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 170/455 (37%), Positives = 260/455 (57%), Gaps = 22/455 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + ++GCQMN DS RM GY V AD++V NTC IREKA K+YS L Sbjct: 80 KKYHIITFGCQMNSADSERMAGCLEEAGYRCVEEAGHADVLVYNTCSIREKAELKLYSAL 139 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR K + GDL +VVAGCVA EG +LRR P V++V+GP R+ +LLE+ Sbjct: 140 GRQAKRKRQHM---GDLKIVVAGCVAAQEGHALLRRVPEVDLVMGPHHANRIGDLLEQVE 196 Query: 145 FGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G +VV +++ +E+ R +TA++ + GC++ CT+C+VP+TRG E Sbjct: 197 AGSQVVAVEHAPIEEDIT-------APRRDSAITAWVNVIHGCNEKCTYCIVPFTRGQEQ 249 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--------EKCTFSDLLYSLS 255 SR+ + E L + G E+TLLGQNV+A+ G+ L G TF+DLL + Sbjct: 250 SRTPEAIRREMLSLGEAGYREVTLLGQNVDAY-GRDLPGFAPDNSGRRAWTFNDLLRHVH 308 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 ++ G+ R+R+ TSHPR ++ LI+A +LD L + H+P QSG + IL+ M R +T Y Sbjct: 309 DVPGIARIRFATSHPRYFTERLIRACAELDKLCEFFHVPFQSGDNYILREMKRGYTHERY 368 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 R+++ IR PD +IS D IVGFPGE+++ F T+ LV+++G+ + + YSPR GTP Sbjct: 369 REMVHTIRRHMPDASISGDAIVGFPGESEEQFERTVALVEEVGFDRVNTAAYSPRPGTPA 428 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPW 434 + QV + VKA+RL L + +G+ +EVL+E + ++ + VGR+ Sbjct: 429 AVWDGQVADLVKADRLNRLNAVVNRVAEERAQRFLGRELEVLVEGPNPRDPAQAVGRTRH 488 Query: 435 LQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468 + + + G ++ VR+ V TLYG + Sbjct: 489 NKLLYFAGDGEALRGQLVDVRVDRVHAYTLYGSMA 523 >gi|332879166|ref|ZP_08446867.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682966|gb|EGJ55862.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 482 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 177/463 (38%), Positives = 260/463 (56%), Gaps = 30/463 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + GY +S+DDADL+++NTC +R+KA + + L Sbjct: 24 KKLYIESYGCQMNFSDSEIVASILSKVGYNTTDSVDDADLVLINTCSVRDKAEQTIRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + K + + V V GC+A+ L IV++VVGP Y LP LLE Sbjct: 84 EQFNVYKRKKPA----MKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEEVE 139 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V+ S ++ + ++ + N GVTAF++I GCD CTFC+VP+TRG E S Sbjct: 140 GGREAVNVILSKDETYADIAPIRLNSN---GVTAFVSITRGCDNMCTFCIVPFTRGRERS 196 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251 R +++E L G E+TLLGQNV++ W G GL D K T F+ LL Sbjct: 197 RDPFSIINEIGDLQARGFKEVTLLGQNVDSYLWYGGGLKKDFSKATEMQQATAINFAKLL 256 Query: 252 YSLSEIKGLVRLRYTTSHPRDMS----DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 ++ +R+R++TS+P+DM+ D + K H + Y+HLPVQSGS+RILK+MN Sbjct: 257 DMVATAYPKMRIRFSTSNPQDMTFEVIDTMAKHHN----ICKYIHLPVQSGSNRILKAMN 312 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R HT EY +ID IR PD AIS D I GFP ET++D R T+ L++ + Y F F Y Sbjct: 313 RMHTREEYFALIDGIRQRIPDCAISQDMITGFPTETEEDHRDTLSLMEYVKYDFGFMFAY 372 Query: 368 SPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 S R GT + +++ V E VK RL + + + A VG +EVLIE + K+ Sbjct: 373 SERPGTLAARKIVDDVPEEVKKRRLTEIIDLQQAHSLYRTQAQVGNTVEVLIEGNSKKSD 432 Query: 427 K-LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +GR+ VV +++ IGD + V+ITD +TL G+ V Sbjct: 433 QEWMGRNSQNTVVVFPKEDYKIGDFVMVKITDCTSTTLIGKAV 475 >gi|325962847|ref|YP_004240753.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arthrobacter phenanthrenivorans Sphe3] gi|323468934|gb|ADX72619.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arthrobacter phenanthrenivorans Sphe3] Length = 519 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 168/449 (37%), Positives = 270/449 (60%), Gaps = 31/449 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ + V+++GCQMNV+DS RM M GY + + AD++V NTC +RE A K+Y Sbjct: 29 PRTYQVRTFGCQMNVHDSERMAGMLEDAGYVQAEG-EQADVVVFNTCAVRENADNKLYGN 87 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K + + + V GC+AQ + E IL+++P V+ V G LP LLERA Sbjct: 88 LGILAPVKAANPG----MQIAVGGCLAQKDRETILKKAPWVDAVFGTHNVGALPALLERA 143 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGI 201 R +++ +E E L + KR + +++I GC+ CTFC+VP RG Sbjct: 144 RH-----NSEAQLE-ILESLDVFPSTLPTKRDSVYSGWVSISVGCNNTCTFCIVPALRGK 197 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 E R ++ E + L+D+G E+TLLGQNVN++ G++ G++ FS LL + I GL Sbjct: 198 EKDRRPGDILAEIQALVDDGAIEVTLLGQNVNSY---GVEFGDRLAFSKLLRACGGIDGL 254 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP +D +I+A + +MP LH+P+QSGSDRIL++M R + + ++ I+D Sbjct: 255 ERVRFTSPHPAAFTDDVIEAMAETPNVMPQLHMPLQSGSDRILRAMKRSYRSTKFLGILD 314 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R P AIS+D IVGFPGET++DF+AT+D+V++ +A AF+F+YS R GTP +++ + Sbjct: 315 KVRERIPHAAISTDIIVGFPGETEEDFQATLDVVEQSRFATAFTFQYSKRPGTPAADLPD 374 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSP 433 Q+ + V + ERL LQ ++ ++ N +G+ +EV++ + G++ G +L GRS Sbjct: 375 QLPKAVVQERFERLTALQDRIAAEE---NQRQLGRRVEVMVTAQSGRKAGETHRLSGRSR 431 Query: 434 WLQ----SVVLNSKNHNIGDIIKVRITDV 458 + SV + GD++ V IT+ Sbjct: 432 DQRLVHFSVPEGAPAPRPGDLVTVTITEA 460 >gi|315924594|ref|ZP_07920813.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter alactolyticus ATCC 23263] gi|315622124|gb|EFV02086.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter alactolyticus ATCC 23263] Length = 443 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 163/442 (36%), Positives = 257/442 (58%), Gaps = 15/442 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMN DS ++ M + GY A L+V+NTC +RE A + + +G +++ Sbjct: 13 TYGCQMNENDSEKLSGMLKAMGYTPTEDETTAGLVVMNTCSVRENADVRFFGNVGNFKHI 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARF-GK 147 K K+ DL++ V GC+ Q ++I +P V++V G +R PELL + G Sbjct: 73 K----KKNPDLILAVCGCMMQQPQIVKKIKEDNPQVDIVFGTHNLHRFPELLANYQASGN 128 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 R ++ + E L + +R+ ++++I +GC+ FCT+C+VPYTRG E+SR Sbjct: 129 RTIEIYDDDDGLIENLPV-----DRRYPFKSYVSIMKGCNNFCTYCIVPYTRGREVSRPH 183 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +++DE + L+ +G E+TLLGQNVN++ DG F+DLL ++ I+GL R+R+ T Sbjct: 184 EKIIDEVKALVADGCLEVTLLGQNVNSYGNDRKDGYG--FADLLRDVNAIEGLERIRFMT 241 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 SHP+DM+D +I A D + P +HL VQSGS ++LK+M+R +T + +++++ P Sbjct: 242 SHPKDMTDEVIDAVAACDKVCPVVHLAVQSGSTKVLKAMHRGYTKEKIIALVEKMHKRIP 301 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI++D IVGFPGET+ DF T+D+V + + AFSF YS R GTP + M +Q+ EN+K Sbjct: 302 HVAITTDLIVGFPGETETDFEETLDIVRRCHFDAAFSFLYSIRTGTPAAKMPDQIPENIK 361 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKNHN 446 ERL L K L + N Q ++VL+E K + +L GR+ + V + Sbjct: 362 HERLNRLLKVLHSEGNERNLWFQDQTVDVLVEGKSTHNEDRLTGRTMNGKLVNFDGNAAT 421 Query: 447 IGDIIKVRITDVKISTLYGELV 468 IG I+ V I + +L G V Sbjct: 422 IGTIVPVHIDCARTFSLDGHAV 443 >gi|303228532|ref|ZP_07315360.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica ACS-134-V-Col7a] gi|302516779|gb|EFL58693.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica ACS-134-V-Col7a] Length = 438 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 161/447 (36%), Positives = 255/447 (57%), Gaps = 17/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++ +YGCQMN DS R+ GY + ++ ADLI+LNTC +RE A KV+ + Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLEIVGYIPTDDVESADLILLNTCAVRETAETKVFGRI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143 G ++ LK ++ +L++ + GC+AQ E+ +R+P +++V+G + E++ E Sbjct: 62 GELKRLK----QKNKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQ 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R K ++ D E + +G + A++ I GC+KFCT+C+VP+ RG EI Sbjct: 118 RTHKHQINVDMDNTVLPELQAKPNGTF------FAWVPIMNGCNKFCTYCIVPHVRGREI 171 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVR 262 SR + +V E +L G EITLLGQNVN++ GLD + T F L+ +L I G+ R Sbjct: 172 SRPVEAIVKEVTELGAKGFKEITLLGQNVNSY---GLDFKDGTDFGTLVDALDHIPGIER 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RY TSHP+DM+ +I A G ++ +LHLP+QSGSDRILK MNR +T Y++++ Sbjct: 229 IRYMTSHPQDMTKSMIDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYC 288 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R ++ +++D IVGFPGET++DF T+ L+ + Y A++F YS R GTP + M EQV Sbjct: 289 REKIKNVVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQV 348 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN 441 E VK RL L E + N G++ ++++E K++ GR+ + V+ Sbjct: 349 PEEVKRVRLQQLMDIQNEISLELNKTMEGKVFDIIVEGPSAKDETMWFGRTSGNKMVLFP 408 Query: 442 SKNH-NIGDIIKVRITDVKISTLYGEL 467 + IGD + I + YG + Sbjct: 409 KDDELTIGDTVPAYIDKAQTWVCYGTI 435 >gi|296139507|ref|YP_003646750.1| RNA modification enzyme, MiaB family [Tsukamurella paurometabola DSM 20162] gi|296027641|gb|ADG78411.1| RNA modification enzyme, MiaB family [Tsukamurella paurometabola DSM 20162] Length = 503 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 163/452 (36%), Positives = 260/452 (57%), Gaps = 23/452 (5%) Query: 17 IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 ++D + + V++YGCQMNV+DS R+ + GY R + + ADL+V NTC +RE A Sbjct: 1 MIDPAQQSRTYEVRTYGCQMNVHDSERLSGLLEDAGYVRADGGEQADLVVFNTCAVRENA 60 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 K+Y L + +K R + + V GC+AQ + +++++P V+VV G L Sbjct: 61 DNKLYGNLSHLAPIKRERPG----MQIAVGGCLAQKDRGTVVKKAPWVDVVFGTHNIGSL 116 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 P LLERAR ++ D F R+ +++I GC+ CTFC+VP Sbjct: 117 PTLLERARHNEKAEVEIKEALDAFPSTLPA----RRESAYAGWVSISVGCNNTCTFCIVP 172 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLY 252 RG E+ R ++ E L+D GV E+TLLGQNVNA+ L +K F+DLL Sbjct: 173 SLRGKEVDRRPGDILAEVHALVDQGVSEVTLLGQNVNAYGVNFADPDLPRDKGAFADLLR 232 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 + I+GL R+R+T+ HP + +D +I A + + P LH+P+QSGSD +LK M R + + Sbjct: 233 ACGRIEGLERVRFTSPHPAEFTDDVIDAMAETPNICPQLHMPLQSGSDTVLKDMRRSYRS 292 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 ++ I+DR+R P AI++D IVGFPGET++DF+AT+D+V+K ++ AF+F+YS R G Sbjct: 293 TKFLGILDRVRERIPHAAITTDIIVGFPGETEEDFQATLDVVEKARFSSAFTFQYSIRPG 352 Query: 373 TPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEK 425 TP +++ +QV + V E RL+ LQ+++ ++ N VG+ +E+L+ + Sbjct: 353 TPAADLPDQVPKQVVQERYDRLIALQERITLEE---NRKQVGRRVELLVALGEGRKDAAT 409 Query: 426 GKLVGRSPWLQSV-VLNSKNHNIGDIIKVRIT 456 ++ GR+ + V S + GD+++V IT Sbjct: 410 KRMSGRARDGRLVHFAGSTDIRPGDVVEVEIT 441 >gi|325279819|ref|YP_004252361.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Odoribacter splanchnicus DSM 20712] gi|324311628|gb|ADY32181.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Odoribacter splanchnicus DSM 20712] Length = 443 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 167/448 (37%), Positives = 261/448 (58%), Gaps = 14/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMNV DS + + + G+E ++AD+I++NTC +RE A ++V Sbjct: 3 KKFYIETYGCQMNVADSEVVAAILTAAGFEHTTDKNEADVILVNTCSVRENAEQRVR--- 59 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR++ R K LLV V GC+A+ G ++ VN+VVGP Y LP L+E+A Sbjct: 60 GRVQGFSEIR-KRNPHLLVGVMGCMAERLGAKLFEEEKNVNIVVGPDAYMDLPLLIEQAA 118 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 GK+ ++ + S + ++ + S +D + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 119 QGKKAINIELSTTETYKDICPSRID-----ETAISGFVSIMRGCNNFCTYCIVPYTRGRE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SRS +V E L G E+TLLGQNVN++ K + + F LL ++ +R Sbjct: 174 RSRSPHSIVGEVIDLQRRGYKEVTLLGQNVNSYLYKD-EQTRVDFPALLELVARTVPDMR 232 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHP+DMSD ++ + +HLPVQSGS+ +LK MNR++T Y I I Sbjct: 233 IRFATSHPKDMSDKTLETIARWPNICKAIHLPVQSGSNSVLKDMNRKYTREWYLDRIAAI 292 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD IS+D VGF E+++D+R T++L+ ++G+ A+ FKYS R GT S L + Sbjct: 293 RRIVPDCGISTDVFVGFHNESEEDYRQTLELMREVGFDLAYMFKYSERPGTQASKSLPDN 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440 +DE K RL L + N +G+ EVL+E K+ ++ GRS + +V Sbjct: 353 IDETTKGRRLQELIDLQTGWSLESNRRDIGKTFEVLVEGVSKKSSDEMFGRSSQNKVIVF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +KN IG +I+V+I D +TL GE+ Sbjct: 413 PAKNIPIGSLIQVKIKDCTSATLIGEIA 440 >gi|218961210|ref|YP_001740985.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Cloacamonas acidaminovorans] gi|167729867|emb|CAO80779.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Cloacamonas acidaminovorans] Length = 427 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 166/442 (37%), Positives = 263/442 (59%), Gaps = 23/442 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F++++YGCQMNV DS + + G++ V + +ADL++ NTC +R A E+V LG Sbjct: 2 KFYIETYGCQMNVADSELIASILTKAGHQEVTQISEADLLLFNTCSVRGHAEERV---LG 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI++ +N R KE +L + V GC+AQ GEEI + V+ V+G Y LP++L Sbjct: 59 RIQS-ENHRKKENPNLKIGVVGCMAQRLGEEINKEKLTVDFVIGVDQYQHLPDILNEE-- 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ + TD D+ + + Y+ A++TI GC+ FC++C+VPY RG E SR Sbjct: 116 TEKTILTDL---DETQLYKGIQPAYHN--DYCAYITIMRGCNNFCSYCIVPYVRGRERSR 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S +++E + G +ITLLGQNVN++ L+GE F LL L+E+ + RLR+ Sbjct: 171 SWQDIIEETISAGNQGKKDITLLGQNVNSY----LNGE-VNFPRLLIILNELDEIYRLRF 225 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TSHP+D+S+ LI+ + + ++HLPVQSGSD ILK+MNR +T Y +++++ Sbjct: 226 ITSHPKDLSEELIEVLANSAKICEHIHLPVQSGSDNILKAMNRNYTVQHYISLVEKLHKF 285 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+IAI++D + GFPGET++DF+ T+ L+ I + AF +K+SPR GT + QV E Sbjct: 286 IPNIAITTDIMTGFPGETENDFQDTLSLMKTIEFDDAFCYKFSPRPGTTAETLSNQVPE- 344 Query: 386 VKAERLLCLQKKL---REQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441 AERL LQ+ + R+ + N +G+ +EV IE K+ K+V G++ ++ VL Sbjct: 345 --AERLARLQQMIDLQRKISLKKNREQIGRKVEVYIESFSKKSRKMVLGKTRDFKTAVLP 402 Query: 442 SKNHNIGDIIKVRITDVKISTL 463 + G + ++ + D STL Sbjct: 403 GTEDDFGTLKQIEVKDATASTL 424 >gi|255326358|ref|ZP_05367442.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia mucilaginosa ATCC 25296] gi|255296575|gb|EET75908.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia mucilaginosa ATCC 25296] Length = 504 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 161/449 (35%), Positives = 263/449 (58%), Gaps = 30/449 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ + V+++GCQMNV+DS RM + + GY R DL+V NTC +RE A+ ++Y Sbjct: 16 PRTYEVRTFGCQMNVHDSERMSGLLEANGYVRAEEGTQPDLVVFNTCAVRENASNRLYGN 75 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG++ +K R +G + + V GC+AQ + + I+ ++P V+VV G LP LLERA Sbjct: 76 LGQLAPVK--RAHKG--MQIAVGGCLAQKDQDAIIEKAPWVDVVFGTHNIGALPTLLERA 131 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201 R + + E L + KR + +++I GC+ CTFC+VP RG Sbjct: 132 RHNHE------AQAELLESLEVFPSTLPTKRDHVYSGWVSISVGCNNTCTFCIVPSLRGK 185 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 E R ++ E + L+D+G E+TLLGQNVN++ G++ G++ FS LL + EI+GL Sbjct: 186 EKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSY---GVEFGDRQAFSKLLRACGEIEGL 242 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP +D +I A + +MP LH+P+QSGSD++LK M R + + ++ I+D Sbjct: 243 ERVRFTSPHPAMFTDDVIDAMAETPNVMPVLHMPLQSGSDKVLKDMRRSYRSKKFLNILD 302 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R P+ I++D IVGFPGET++DF+ T+ +V++ ++ AF+F+YS R GTP + M Sbjct: 303 KVRERIPNAVITTDIIVGFPGETEEDFQDTLKVVEQARFSSAFTFQYSIRPGTPAATMEN 362 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSP 433 Q+ + V + ERL+ LQ ++ ++ N +G+ +E+++ K +L GR P Sbjct: 363 QIPKEVVQERYERLIALQDRIAGEE---NRKQLGKTVELMVVAEAGRKAEQTHRLSGRGP 419 Query: 434 WLQ----SVVLNSKNHNIGDIIKVRITDV 458 + SV + GD++ V IT+ Sbjct: 420 DQRLVHFSVPEGCETPRPGDMVTVPITEA 448 >gi|256840979|ref|ZP_05546486.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13] gi|256736822|gb|EEU50149.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13] Length = 457 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 168/450 (37%), Positives = 269/450 (59%), Gaps = 19/450 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD I +NTC +R+ A +K+Y L Sbjct: 19 RKLFIETYGCQMNVADSEVVASIMKMDGYSMTENIEEADAIFVNTCSVRDNAEQKIYGRL 78 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++LK ++ L+V V GC+A+ E+++ ++VVGP +Y LP L+ Sbjct: 79 QYFQSLK----RKKKSLIVGVLGCMAERVKEDLIHVHH-ADLVVGPDSYLDLPNLVGAVE 133 Query: 145 FGKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G++ ++ + S ++ ++ + + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 134 HGEKAINVELSTQETYKDVIPLKLPGVH----ISGFVSIMRGCNNFCTYCIVPYTRGRER 189 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +++E R + + G E+TLLGQNVN++ + +GE TF LL +++ +R+ Sbjct: 190 SRDIESILNEIRDMHEKGFKEVTLLGQNVNSYSFEK-EGETITFPILLDRVAKEVPDMRI 248 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP+DMSD ++ D + ++HLP QSGS RIL MNR++T Y I IR Sbjct: 249 RFTTSHPKDMSDDTLRVIAANDNICKFIHLPAQSGSSRILMVMNRKYTREWYLDRIAAIR 308 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382 + PD AIS+D GF ET+ D++ T+ L+ ++GY AF FKYS R GT ++ LE V Sbjct: 309 RIVPDCAISTDLFCGFHSETEGDYQETLSLMREVGYDSAFLFKYSERPGTYAASHLEDNV 368 Query: 383 DENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 E K RL + LQ KL E+ N +G+ EVLIE K + +L GR+ + V Sbjct: 369 PEEEKVRRLQGMIDLQNKLSEES---NLRDIGKTFEVLIEGFSKRSREQLFGRTSQNKVV 425 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + KN+++G IKV+I +TL+GE V Sbjct: 426 IFDKKNYHVGQFIKVKIHKASSATLFGEPV 455 >gi|294508608|ref|YP_003572667.1| 2-methylthioadenine synthetase [Salinibacter ruber M8] gi|294344937|emb|CBH25715.1| 2-methylthioadenine synthetase [Salinibacter ruber M8] Length = 613 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 163/447 (36%), Positives = 262/447 (58%), Gaps = 9/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GY AD+++LNTC IRE A K+ + L Sbjct: 152 KQVYIETYGCQMNVNDSGIVASVLEESGYGLTRDQAAADVVLLNTCAIRENAERKIRARL 211 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143 +R+ K R G+L++ V GC+A+ E++L + +V+VVVGP Y LP+LL E Sbjct: 212 SMLRSEKEKR---DGELMLGVLGCMAERLREKLLEQEDLVDVVVGPDAYRDLPQLLYEAD 268 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+ V+ + S ++ +E + V N GV+A+++I GCD CTFCVVP+TRG E Sbjct: 269 ATGQAAVNVELSKQETYEDIQPVRYDSN---GVSAYVSIMRGCDNMCTFCVVPFTRGREE 325 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ ++ E +L + G E+TLLGQNVN++ DG +F++L+ +S + +R+ Sbjct: 326 SRPVTTILSEVARLAEEGYKEVTLLGQNVNSYHYTDADGTSVSFAELVDRVSRVSPEMRV 385 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY+TSHP+D +D L+K H D + Y+HLPVQ G+ +L M R +T EY + +R + Sbjct: 386 RYSTSHPKDCTDDLLKVHRDRPNVCNYIHLPVQHGNTEVLDRMRRTYTREEYLALTERAK 445 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382 + P +++S+D I GF GET+ T+ L++++ Y A+ FKYS R T + E V Sbjct: 446 ELCPGVSLSTDLIAGFCGETEAQHEDTLSLMEEVRYDHAYMFKYSERPQTYAARKYEDDV 505 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E+ K RL + + + N+A VG++ VL+E K+ + GR+ + VV + Sbjct: 506 PEDTKQRRLEEIIELQNQHAKESNEAEVGRVHTVLVEGPSKKSDAQFFGRTDTNKGVVFD 565 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +++ GD ++VRI D STL G + Sbjct: 566 REDYEKGDYVRVRIEDCTSSTLLGTAI 592 >gi|227833318|ref|YP_002835025.1| 2-methylthioadenine synthetase [Corynebacterium aurimucosum ATCC 700975] gi|227454334|gb|ACP33087.1| 2-methylthioadenine synthetase [Corynebacterium aurimucosum ATCC 700975] Length = 520 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 154/420 (36%), Positives = 241/420 (57%), Gaps = 22/420 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ + V+++GCQMNV+DS R+ + GY + + DLIV NTC +RE A +++Y Sbjct: 22 PRTYEVRTFGCQMNVHDSERISGLLEEAGYSAAPNGTEPDLIVFNTCAVRENADKRLYGT 81 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG ++ K + + + V GC+AQ + + +L +P V+ V G LP LLERA Sbjct: 82 LGALKKTKENHPG----MQIAVGGCLAQKDKDTVLDHAPWVDAVFGTHNMAALPALLERA 137 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R + + D E V R+ ++++ GC+ CTFC+VP RG E Sbjct: 138 RHND---EAQVEIVDALEAFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEE 193 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKG 259 R ++ E + L+D GV E+TLLGQNVNA+ L ++ FS LL + +I+G Sbjct: 194 DRRPGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFADPDLPRDRFAFSKLLREVGKIEG 253 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L RLR+T+ HP + + +I A + + P LH+P+QSGSD++LK M R + ++ I+ Sbjct: 254 LERLRFTSPHPAEFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMRRSYRTKKFLGIL 313 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 D +R P AI++D IVGFPGET++DF AT+++V + +A AF+F+YSPR GTP + M Sbjct: 314 DEVREKMPHAAITTDIIVGFPGETEEDFEATLEVVRRARFASAFTFQYSPRPGTPAAEME 373 Query: 380 EQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRS 432 Q+ + V + ERL+ LQ ++ ++ N VG +E+L++ G K +L GR+ Sbjct: 374 NQIPKEVVQERFERLVALQDSIQAEE---NAKLVGTDVELLVQAEGGRKSAETHRLTGRA 430 >gi|320450914|ref|YP_004203010.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermus scotoductus SA-01] gi|320151083|gb|ADW22461.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermus scotoductus SA-01] Length = 440 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 168/443 (37%), Positives = 257/443 (58%), Gaps = 17/443 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + ++GCQMN YDS + S G+E V+S+++AD +++NTC +R K EKV S LG Sbjct: 2 RAHIITFGCQMNEYDSHLVASELVSLGWELVDSVEEADFVLVNTCAVRGKPVEKVRSLLG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 ++R K+ R LL+ + GC+AQ + + + R V+V++GP LPE L + Sbjct: 62 QLRKEKDRR-----GLLIGLMGCLAQLDEGQQMARKFGVDVLLGPGALTSLPEAL---KG 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +R D + ED + + G ++A +TI GC+ CT+C+VP TRG E+SR Sbjct: 114 NQRFWDLTFK-EDLLDYIPPPPRG-----ALSAHVTIIRGCNHHCTYCIVPTTRGPEVSR 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ E L GV E+TLLGQNVN++ GK G +F++LL + ++ G+ R+R+ Sbjct: 168 HPDLILKEIETLKKAGVVEVTLLGQNVNSY-GKDQPGFP-SFAELLRMVGQM-GIPRVRF 224 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TSHP + +D +I+A + + Y+HLPVQSGSDR+L+ M R + +Y + I RIR + Sbjct: 225 LTSHPVNFTDDIIEAIAETPAITRYIHLPVQSGSDRVLRRMAREYRRAQYLERIRRIREI 284 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD +S+D IVGFPGET++DF+ T+ L D++GY QA+ F YSPR GTP + + Sbjct: 285 LPDAVLSTDIIVGFPGETEEDFQETLSLYDEVGYDQAYMFIYSPRPGTPAYKHFQDLPRE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 VK ERL L +K +E N VG+ +EVL+ KE+G + G V++ + Sbjct: 345 VKVERLQRLIEKQKEWSYRRNLEWVGKTVEVLVRGVAKEEGYVQGHDRGNHPVLVPAHQA 404 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 + +V I L+GE+V Sbjct: 405 PTPGLYQVEIKQATPHLLFGEVV 427 >gi|291301633|ref|YP_003512911.1| RNA modification enzyme, MiaB family [Stackebrandtia nassauensis DSM 44728] gi|290570853|gb|ADD43818.1| RNA modification enzyme, MiaB family [Stackebrandtia nassauensis DSM 44728] Length = 495 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 168/442 (38%), Positives = 259/442 (58%), Gaps = 28/442 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + VK+YGCQMNV+DS R+ + GY +AD++V NTC +RE A ++Y LG Sbjct: 10 YAVKTYGCQMNVHDSERIGGLLEDAGYVPAADTGEADVVVFNTCAVRENADNRLYGNLGH 69 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R K ++ + + V GC+AQ + +I++++P V+VV G LP LLERAR Sbjct: 70 LRPQKVAKPG----MQIAVGGCLAQKDRGDIVKKAPWVDVVFGTHNIGSLPVLLERARHN 125 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEIS 204 R VE E L + KR T +++I GC+ CTFC+VP RG E Sbjct: 126 ARA-----EVE-ILEALEVFPSTLPTKRESTYAGWVSISVGCNNTCTFCIVPSLRGKEKD 179 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263 R +++ E R L+D GV E+TLLGQNVN++ G++ G+K F LL + EI GL R+ Sbjct: 180 RRPGEILAEVRALVDEGVSEVTLLGQNVNSY---GVEFGDKLAFGKLLRACGEIDGLERV 236 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP+D +D +I A + + LH+P+QSGSD +LK M R + +Y IID++R Sbjct: 237 RFTSPHPKDFTDDVIDAMAETPNVCHQLHMPLQSGSDTVLKGMRRSYRREKYLGIIDKVR 296 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PD AI++D IVGFPGET+ DF T+D+V K ++ AF+F+YS R GTP + M QV Sbjct: 297 AAMPDAAITTDIIVGFPGETEADFEDTLDVVRKARFSGAFTFQYSIRPGTPAATMDGQVP 356 Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPWLQ 436 ++V + ERL+ +Q+++ + N +G+ +EVL+ + G++ GR+ + Sbjct: 357 KHVVQERYERLIAVQEEISWDE---NKKQIGREVEVLVAVGEGRKDAATGRMSGRARDGR 413 Query: 437 SVVLNSKNHNI--GDIIKVRIT 456 V ++ ++ GD++ IT Sbjct: 414 LVHFDATGFDVRPGDVVTTTIT 435 >gi|333029498|ref|ZP_08457559.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacteroides coprosuis DSM 18011] gi|332740095|gb|EGJ70577.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacteroides coprosuis DSM 18011] Length = 459 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 171/452 (37%), Positives = 263/452 (58%), Gaps = 20/452 (4%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 I ++ +++YGCQMNV DS + + GYE +++AD + LNTC IRE A K+Y Sbjct: 16 IAEKKLLIETYGCQMNVADSEVVASVMKMAGYEITEDLEEADAVFLNTCSIRENAELKIY 75 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L ++K R K+G L++ V GC+A+ + ++ N+VVGP Y LP+L+ Sbjct: 76 KRLDYFYSMKR-RKKKG--LIIGVLGCMAERVKQSLIEEHH-ANLVVGPDAYLSLPDLIA 131 Query: 142 RARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G++ +D + S + ++ + S + G ++ F++I GC+ FCT+C+VPYTR Sbjct: 132 SVEAGEKAIDIELSTTETYKDIIPSRLCGT-----AISGFVSIMRGCNNFCTYCIVPYTR 186 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258 G E SR + +++E LI G EITLLGQNVN++ + GE F LL ++ Sbjct: 187 GRERSREVESILNEVDDLIKKGYKEITLLGQNVNSYHFINKETGEDIQFHHLLEIVATHA 246 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 R+R++TSHP+DMSD ++ + ++HLPVQSGS RILK MNR++T Y Sbjct: 247 PSTRIRFSTSHPKDMSDDTLRVIAKTPNICKHIHLPVQSGSSRILKLMNRKYTREWYLDR 306 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-N 377 I+ I+ + P+ I++D GF ET++D + ++ L+++ + AF FKYS R GT S N Sbjct: 307 IEAIKRIIPNCGITTDIFCGFHSETEEDHQMSLSLMEQCQFDYAFMFKYSERPGTYASKN 366 Query: 378 MLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSP 433 + + V E +K RL + LQ KL ++ N A +GQ EVL+E K K +L GRS Sbjct: 367 LPDDVPEEIKTRRLNEIIELQSKL---SLASNKADIGQTYEVLVEGVSKKSKDQLFGRSQ 423 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 + V+ + KNH IGD ++VRI +V +TL G Sbjct: 424 QNKVVIFDRKNHRIGDYVQVRIDEVSSATLIG 455 >gi|289550913|ref|YP_003471817.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus lugdunensis HKU09-01] gi|315658416|ref|ZP_07911288.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus lugdunensis M23590] gi|289180445|gb|ADC87690.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus lugdunensis HKU09-01] gi|315496745|gb|EFU85068.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus lugdunensis M23590] Length = 514 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 163/446 (36%), Positives = 263/446 (58%), Gaps = 15/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ M + + GY+ + + +AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVMAGILEALGYQSTSDIQEADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK +R D L+ V GC++Q E +IL+ V+++ G ++LPE+LE A Sbjct: 130 LKHLKKNR----PDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ + A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 MSKAMVVDVWSKEGDIIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E ++L G EITLLGQNVN++ GK ++ DLL ++S+I + R+ Sbjct: 241 SRRPEDIIAEVKELAREGYQEITLLGQNVNSY-GKDIEDIDYELGDLLEAISKI-DIPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I+ ++P++HLPVQSG++ +LK M R++T Y +++ +I+ Sbjct: 299 RFTTSHPWDFTDRMIQVIAQGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLELVSKIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P+IA+++D IVG+P ET+D F T+ L D++ + A+++ YS R GTP + M + V Sbjct: 359 AAIPNIALTTDIIVGYPNETEDQFEETLTLYDEVAFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 VK +RL L +K+ + + VL E K+ L G + + V Sbjct: 419 LEVKKQRLQRLNQKVGQYSQQAMSHYENTTVTVLCEGTSKKDDTVLAGYTGKNKLVNFKG 478 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG +++V+I + K +L G V Sbjct: 479 PKEAIGQLVEVKIDEAKQYSLNGTFV 504 >gi|194335519|ref|YP_002017313.1| RNA modification enzyme, MiaB family [Pelodictyon phaeoclathratiforme BU-1] gi|229890587|sp|B4SCB6|MIAB_PELPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|194307996|gb|ACF42696.1| RNA modification enzyme, MiaB family [Pelodictyon phaeoclathratiforme BU-1] Length = 440 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 164/448 (36%), Positives = 261/448 (58%), Gaps = 22/448 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F++ ++GCQMN DS + + GY S D A +I+LNTC +RE A +++ +L Sbjct: 9 FYIHTFGCQMNQADSATITSLLQQAGYVAAESEDRAGIILLNTCAVRENAVDRIEHYLQH 68 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 ++ LK K L+V + GC+ Q + EE+ SP ++++ GP TY LP+L+E+AR G Sbjct: 69 LQGLK----KRDKRLIVGILGCIPQHQREEMFATSPAIDLLAGPDTYRTLPQLIEQARSG 124 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + D++V + +E + V R+ ++AF+ + GC+ C +CVVP+TRG E S Sbjct: 125 AKPFSLDFNVAETYEGIDPV-----RQGSISAFVPVMRGCNNMCAYCVVPFTRGRERSHP 179 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRY 265 V+ E +KL+ +G EITLLGQNVN++ D E+ F+ LL ++S R+R+ Sbjct: 180 FRAVMGEVQKLVASGYSEITLLGQNVNSYD----DPEQGVNFAALLDAVSCAAPQARVRF 235 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTSHP+D+S L++ + + ++HLPVQSGS L MNR HT EY + I IRS+ Sbjct: 236 TTSHPKDISGELVRTIANRPNICNHIHLPVQSGSTATLGRMNRGHTIEEYLEKIALIRSL 295 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDE 384 P + +S+D I GF GE ++D +A+++L+ + + A+ F YS R GT +++ V E Sbjct: 296 LPGVTLSTDIIAGFCGEQEEDHQASLELLSTLRFDSAYMFYYSTRPGTFAARTLVDDVPE 355 Query: 385 NVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440 VK RL + LQ + + F A +G ++EVL E K +L+GR+P ++VV Sbjct: 356 VVKKRRLQEIIDLQNTISGEL--FQQA-IGSVVEVLAESESKRSAEQLMGRTPGNRAVVF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + + GD+++V IT +TL G V Sbjct: 413 DREGYRPGDLVRVLITAATSATLTGRPV 440 >gi|86609143|ref|YP_477905.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502140|sp|Q2JKY0|MIAB_SYNJB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|86557685|gb|ABD02642.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. JA-2-3B'a(2-13)] Length = 444 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 168/446 (37%), Positives = 257/446 (57%), Gaps = 16/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++ ++GCQMN D+ RM + S GY ADL++ NTC IR+ A +KVYS+LG Sbjct: 6 YYTITFGCQMNRADTERMAGILESLGYVATEDELQADLVLYNTCTIRDNAEQKVYSYLG- 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 ++ R ++ + ++VAGCVAQ EGE++LRR P +++V+GPQ RL +LL + G Sbjct: 65 ---IQAQRKRKNPAIKLIVAGCVAQQEGEKLLRRVPELDLVMGPQYVNRLGDLLAQVEAG 121 Query: 147 KRVVDTD-YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +VV TD + + + R VTA++ + GC++ CT+C+VP RG E SR Sbjct: 122 NQVVATDPVEIPEDITKP-------RRDSQVTAWINVIYGCNERCTYCIVPRVRGQEQSR 174 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + E + G E+TLLGQN++A+ G+ LD K + LL + ++G+ R+R+ Sbjct: 175 QPQAIRAEIEDVARAGYREVTLLGQNIDAY-GRDLD-PKTNLASLLRFVHSVEGIERIRF 232 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TSHPR ++ LI +L + + H+P Q+GS+ +LK M R +T YRQII IR Sbjct: 233 ATSHPRYFTEELITTCAELPKVCEHFHIPFQAGSNEVLKRMRRGYTHERYRQIIQLIRQY 292 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ AIS+D IVGFPGET+ F+ T+ LV IG+ Q + YSPR GTP + +QV E Sbjct: 293 MPEAAISADAIVGFPGETEAQFQETLQLVQDIGFDQVNTAAYSPRPGTPAAEWPDQVPEE 352 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKN 444 K++RL L + + E + + +GQ+ EVL+E + K + +GR+ + V Sbjct: 353 EKSDRLQRLNRLVAEVAAARSARLLGQVQEVLVEGPNPKNPRQAMGRTRGNRLVFFEGDP 412 Query: 445 HNI-GDIIKVRITDVKISTLYGELVV 469 + G ++ VRIT + +L GE V Sbjct: 413 EELQGSLVPVRITATRAFSLTGEAVT 438 >gi|257467848|ref|ZP_05631944.1| MIAB protein [Fusobacterium ulcerans ATCC 49185] gi|317062137|ref|ZP_07926622.1| tRNA 2-methylthioadenosine synthase [Fusobacterium ulcerans ATCC 49185] gi|313687813|gb|EFS24648.1| tRNA 2-methylthioadenosine synthase [Fusobacterium ulcerans ATCC 49185] Length = 436 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 160/441 (36%), Positives = 265/441 (60%), Gaps = 16/441 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV +S +++ +F + GYE +++++D I LNTC +RE AA ++Y LG ++++ Sbjct: 8 TYGCQMNVNESAKIKKIFQNIGYEITENIEESDAIFLNTCTVREGAATQIYGKLGELKHI 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFGKR 148 K R ++ + GC AQ +G+E+L++ P +++++G Q R+P+ ++ + K Sbjct: 68 KERR-----GSIIGITGCFAQEQGKELLKKFPQIDIIMGNQNIGRIPQAIDDIEHKTNKH 122 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V+ TD ED E +D ++ K+ TA ++I GC+ FCT+C+VPY RG E S L Sbjct: 123 VIYTD--CED--ELPPRLDADFDSKK--TASISITYGCNNFCTYCIVPYVRGRERSVPLD 176 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +++ + ++ + G EI LLGQNVN++ +G+ F+ LL + +++G +R+ + Sbjct: 177 EIIHDVKQYAEKGYKEIILLGQNVNSYGKDFKNGD--NFAKLLEEICKVEGDFLVRFISP 234 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 HPRD SD +I D + LHLP+QSGS RILK MNR +T +Y + ++I+ P Sbjct: 235 HPRDFSDEVIDVIAKNDKIAKSLHLPLQSGSTRILKMMNRGYTKEQYIALAEKIKERIPG 294 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A+++D IVGFPGET++DF T+D+V +I + +F F YS R GT + M EQ+D VK Sbjct: 295 VALTADIIVGFPGETEEDFLDTLDVVKRIQFENSFMFMYSIRQGTKAAEMDEQIDSEVKK 354 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNI 447 ERL L + ++ ++ +G+ + +L+E K K L GR+ + V+ Sbjct: 355 ERLQRLIEVQNSCSLAESETYMGKTVRILVEGESRKNKDVLTGRTSTNKIVLFKGDKALE 414 Query: 448 GDIIKVRITDVKISTLYGELV 468 G + V+I D K TLYG++V Sbjct: 415 GTFVNVKIYDCKTWTLYGDIV 435 >gi|229490909|ref|ZP_04384744.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rhodococcus erythropolis SK121] gi|229322299|gb|EEN88085.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rhodococcus erythropolis SK121] Length = 521 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 148/396 (37%), Positives = 232/396 (58%), Gaps = 12/396 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS R+ + GY + + D DL+V NTC +RE A K+Y L + Sbjct: 28 YEVRTYGCQMNVHDSERLSGLLEDAGYSKAETGTDPDLVVFNTCAVRENADNKLYGNLSQ 87 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + K + D+ + V GC+AQ + + +++++P V+VV G LP LL+RAR Sbjct: 88 LAPNKEANP----DMQIAVGGCLAQKDRDTVVKKAPFVDVVFGTHNIGSLPALLDRARHN 143 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +R + + D E R+ +++I GC+ CTFC+VP RG E+ R Sbjct: 144 QRA---EVEILDALEAFPSTLPA-KRESAYAGWVSISVGCNNTCTFCIVPALRGKEVDRR 199 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLVR 262 ++ E + L+D GV E+TLLGQNVNA+ D E + F+ LL + I GL R Sbjct: 200 PGDILAEVQALVDEGVSEVTLLGQNVNAYGVSFADPEQPRDRGAFASLLKACGHIDGLER 259 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP + +D +I+A + P LH+P+QSGSD++LK+M R + +Y II+++ Sbjct: 260 VRFTSPHPAEFTDDVIEAMATTPNVCPQLHMPLQSGSDKVLKAMKRSYRKSKYLGIIEKV 319 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P AI++D IVGFPGET++DF T+D+V K ++ A++F+YS R GTP + M +Q+ Sbjct: 320 RAAMPHAAITTDIIVGFPGETEEDFEETLDVVRKARFSNAYTFQYSKRPGTPAAEMADQL 379 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + V ER + L E + N VG +E+L+ Sbjct: 380 PKEVVQERYMRLLAVQEEVNIEENRKLVGTEVELLV 415 >gi|296327837|ref|ZP_06870374.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155051|gb|EFG95831.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 435 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 160/441 (36%), Positives = 265/441 (60%), Gaps = 16/441 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV +S +++ +F + GY+ +D+AD + LNTC +RE AA +++ LG ++ L Sbjct: 8 TYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKLGELKAL 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K R ++ V GC AQ +GEE++++ PI+++V+G Q R+P+ +E+ + Sbjct: 68 KEKR-----GTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIENNESTH 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + ED+ + G ++ TA ++I GC+ FCTFC+VPY RG E S L ++ Sbjct: 123 EVYTDNEDELPPRLDAEFGSDQ----TASISITYGCNNFCTFCIVPYVRGRERSVPLEEI 178 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V + + + G EI LLGQNVN++ +G+ F+ LL + +++G +R+ + HP Sbjct: 179 VKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVRFVSPHP 236 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 RD +D +I+ + + LHLP+QSGS +ILK M R +T +Y ++D+I+S P +A Sbjct: 237 RDFTDDVIEVIAKNEKISKCLHLPLQSGSSQILKKMRRGYTKEKYLALVDKIKSKIPGVA 296 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 +++D IVGFPGET++DF T+D+V K+ + ++ F YS R GT + M Q++E+VK ER Sbjct: 297 LTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIEESVKKER 356 Query: 391 LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNI 447 L L + + + SF ++ G+I++VL+E K+ K L GR+ + V+ Sbjct: 357 LQRLME--VQNKCSFYESSKYKGRIVKVLVEGPSKKNKEVLSGRTSTNKIVLFRGNLALK 414 Query: 448 GDIIKVRITDVKISTLYGELV 468 G + V+I + K TLYGE+V Sbjct: 415 GQFVNVKINECKTWTLYGEIV 435 >gi|329121178|ref|ZP_08249806.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus DSM 19965] gi|327470260|gb|EGF15721.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus DSM 19965] Length = 447 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 157/417 (37%), Positives = 255/417 (61%), Gaps = 25/417 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++++ +YGCQMN D+ R+ + GY N MD+AD+++LNTC IR+ A EKVY + Sbjct: 9 KKYYTITYGCQMNESDTERINGQLEALGYTPANVMDEADIVILNTCSIRQNAEEKVYGKI 68 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143 G ++ LK K+G +L+ +AGC+AQ ++++ R PI++ V+GP + L +++ R Sbjct: 69 GEVKKLKEK--KDG--VLLGIAGCMAQESKKKLIERMPIIDFVIGPYHIHDLKDIVTARN 124 Query: 144 RFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G VV T + V+D E + +RK + A++ I +GC+KFCT+C+VPY RG Sbjct: 125 AEGAHVVLTKMNPQRVKDYSELTA------SRKSNIFAWVPIMQGCNKFCTYCIVPYVRG 178 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKG 259 E SR +S V+ E ++L +G EITLLGQNVN++ GLD T FSDL+ +L + G Sbjct: 179 RETSRPISDVLKEVKQLAKDGYKEITLLGQNVNSY---GLDFRNGTDFSDLIKALDTVDG 235 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+RY TSHPRDM+ ++ A + ++ +HLPVQ GS+ +LK MNR +T Y ++ Sbjct: 236 IERIRYMTSHPRDMTFEMVDAIAESPKVVTQMHLPVQHGSNEMLKKMNRGYTIEHYFELF 295 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 D ++ PD+ +++D I GFPGET++ + T++++ + + A++F YSPR GTP + M Sbjct: 296 DYVKKKIPDVVVTTDLITGFPGETEEMHKETLEILKRARFDSAYTFIYSPRKGTPAARMT 355 Query: 380 EQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRS 432 + V +++ RL + LQ K+ + N G+ +V++E K+ K GR+ Sbjct: 356 DTVPSDIQHRRLNEIMELQNKI---SLEINKEMEGKTFQVIVEGPTKQNKDNWFGRT 409 >gi|28572773|ref|NP_789553.1| hypothetical protein TW627 [Tropheryma whipplei TW08/27] gi|81629788|sp|Q83HG3|MIAB_TROW8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|28410906|emb|CAD67291.1| conserved hypothetical protein [Tropheryma whipplei TW08/27] Length = 470 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 161/416 (38%), Positives = 253/416 (60%), Gaps = 25/416 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS R+ + +GY + S DDAD++VLNTC +RE A + Y LG+ Sbjct: 3 YTVRTYGCQMNVHDSERIAGVLEDEGYVKSGS-DDADVVVLNTCAVRENADNRFYGNLGQ 61 Query: 87 IRNLKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + KN+ RI++ + V GC+AQ + +I ++P V+VV G LP LL R+R Sbjct: 62 LLQKKNNGRIRQ-----IAVGGCLAQKDRHKIFEKAPWVDVVFGTHNLGSLPALLRRSRH 116 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 K + ++D E R+ +A+++I GC+ CTFC+VP RG E R Sbjct: 117 NK---TAEIEIKDFLETFP-SSLPVRRESNYSAWVSISVGCNNTCTFCIVPSLRGKERDR 172 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 ++ E L+ GV E+TLLGQNVN + G++ G++ F+ LL I+GL RL+ Sbjct: 173 RPGDILAEISALVSEGVLEVTLLGQNVNTY---GVEFGDRSAFASLLRKAGAIEGLERLK 229 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP + +I A D ++P LH+P+QSGSDRIL++M R + A ++ +II R+ Sbjct: 230 FTSPHPAAFTSDVIDAMHDTQAVLPQLHMPLQSGSDRILRAMRRSYRAGKFLKIISEARN 289 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+IAI++D IVGFPGET++DF+ T++LV ++ +A AF+F+YSPR GTP ++M Q+ Sbjct: 290 KIPNIAITTDIIVGFPGETEEDFQDTLNLVAEVRFASAFTFQYSPRPGTPAASMPNQIPG 349 Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL----VGRSP 433 ++ E RLL LQ ++ ++ N +G+ +E+L+ G++ L GR+P Sbjct: 350 DIVQERYDRLLDLQNRIALEE---NRKLIGKEVELLVTVGGRKDSMLDNRYTGRTP 402 >gi|239917253|ref|YP_002956811.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus NCTC 2665] gi|281414269|ref|ZP_06246011.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus NCTC 2665] gi|239838460|gb|ACS30257.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus NCTC 2665] Length = 515 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 164/446 (36%), Positives = 259/446 (58%), Gaps = 30/446 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + S GY V ADL+V NTC +RE A ++Y LG Sbjct: 28 YEVRTFGCQMNVHDSERISGLLESTGYAPVADNAQADLVVFNTCAVRENADNRLYGNLGN 87 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R +K++ + + V GC+AQ + I RR+P V+VV G LP LLER+R Sbjct: 88 LRAVKDAHP----GMQIAVGGCLAQKDQAAIQRRAPWVDVVFGTHNIGSLPVLLERSRH- 142 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + +E E L + KR T +++I GC+ CTFC+VP RG E Sbjct: 143 ----NAEAEIE-ILESLEVFPSTLPTKRDSTHSGWVSISVGCNNTCTFCIVPSLRGKEKD 197 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263 R +++ E + L+ G E+TLLGQNVN + G++ G++ F+ LL + EI+GL R+ Sbjct: 198 RRPGEILAEVQALVGAGAVEVTLLGQNVNTY---GVEFGDRGAFAKLLRACGEIEGLERV 254 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP +D +I A + +MP LH+P+QSGSD++LK M R + + ++ +I++++R Sbjct: 255 RFTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDKVLKDMRRSYRSAKFLRILEKVR 314 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P AI++D IVGFPGET++DF TM +V+ ++ AF+F+YS R GTP M QV Sbjct: 315 ERIPHAAITTDIIVGFPGETEEDFAETMRVVEASRFSSAFTFQYSIRPGTPAGEMEHQVP 374 Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPWLQ 436 + V + ERL+ LQ ++ ++++ VG E+L+ E+G+L GR+P + Sbjct: 375 KAVVQERFERLVALQDRISAEEMA---TLVGTRQELLVTADSGSKAAERGRLSGRAPDNR 431 Query: 437 ----SVVLNSKNHNIGDIIKVRITDV 458 SV ++ GD + V +T+ Sbjct: 432 LVHFSVPAGAETPRPGDFVTVTVTEA 457 >gi|313892531|ref|ZP_07826118.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dialister microaerophilus UPII 345-E] gi|313118928|gb|EFR42133.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dialister microaerophilus UPII 345-E] Length = 447 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 157/417 (37%), Positives = 255/417 (61%), Gaps = 25/417 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++++ +YGCQMN D+ R+ + GY N MD+AD+++LNTC IR+ A EKVY + Sbjct: 9 KKYYTITYGCQMNESDTERINGQLEALGYTPANVMDEADIVILNTCSIRQNAEEKVYGKI 68 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143 G ++ LK K+G +L+ +AGC+AQ ++++ R PI++ V+GP + L +++ R Sbjct: 69 GEVKKLKEK--KDG--VLLGIAGCMAQESKKKLIERMPIIDFVIGPYHIHDLKDIVTARN 124 Query: 144 RFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G VV T + V+D E + +RK + A++ I +GC+KFCT+C+VPY RG Sbjct: 125 AEGAHVVLTKMNPQRVKDYSELTA------SRKSNIFAWVPIMQGCNKFCTYCIVPYVRG 178 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKG 259 E SR +S V+ E ++L +G EITLLGQNVN++ GLD T FSDL+ +L + G Sbjct: 179 RETSRPISDVLKEVKQLAKDGYKEITLLGQNVNSY---GLDFRNGTDFSDLIRALDTVDG 235 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+RY TSHPRDM+ ++ A + ++ +HLPVQ GS+ +LK MNR +T Y ++ Sbjct: 236 IERIRYMTSHPRDMTFEMVDAIAESPKVVTQMHLPVQHGSNEMLKKMNRGYTIEHYFELF 295 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 D ++ PD+ +++D I GFPGET++ + T++++ + + A++F YSPR GTP + M Sbjct: 296 DYVKKKIPDVVVTTDLITGFPGETEEMHKETLEILKRARFDSAYTFIYSPRKGTPAARMT 355 Query: 380 EQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRS 432 + V +++ RL + LQ K+ + N G+ +V++E K+ K GR+ Sbjct: 356 DTVPSDIQHRRLNEIMELQNKI---SLEINKEMEGKTFQVIVEGPTKQNKDNWFGRT 409 >gi|19703810|ref|NP_603372.1| MIAB protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|81484620|sp|Q8RG43|MIAB_FUSNN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|19713958|gb|AAL94671.1| MIAB protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 435 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 161/441 (36%), Positives = 264/441 (59%), Gaps = 16/441 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV +S +++ +F + GY+ +D+AD + LNTC +RE AA +++ LG ++ L Sbjct: 8 TYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKLGELKAL 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K R ++ V GC AQ +GEE++++ PI+++V+G Q R+P+ +E+ + Sbjct: 68 KEKR-----GTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIENNESTH 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + ED+ + G ++ TA ++I GC+ FCTFC+VPY RG E S L ++ Sbjct: 123 EVYTDNEDELPPRLDAEFGSDQ----TASISITYGCNNFCTFCIVPYVRGRERSVPLEEI 178 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V + + + G EI LLGQNVN++ +G+ F+ LL + +++G +R+ + HP Sbjct: 179 VKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVRFVSPHP 236 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 RD +D +I+ + LHLP+QSGS +ILK M R +T +Y ++D+I+S P +A Sbjct: 237 RDFTDDVIEVIAKNKKISKCLHLPLQSGSSQILKKMRRGYTKEKYLALVDKIKSKIPGVA 296 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 +++D IVGFPGET++DF T+D+V K+ + ++ F YS R GT + M Q++E+VK ER Sbjct: 297 LTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIEESVKKER 356 Query: 391 LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNI 447 L L + + + SF ++ G+I++VL+E K+ K L GR+ + V+ Sbjct: 357 LQRLME--VQNKCSFYESSKYKGRIVKVLVEGPSKKNKEVLSGRTSTNKIVLFRGNLALK 414 Query: 448 GDIIKVRITDVKISTLYGELV 468 G I V+I + K TLYGE+V Sbjct: 415 GQFINVKINECKTWTLYGEIV 435 >gi|229890694|sp|A9KMU9|MIAB_CLOPH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 456 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 164/458 (35%), Positives = 265/458 (57%), Gaps = 14/458 (3%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 V ++ D+ P F V+++GCQMN DS ++ + + GY +S ++AD +V NTC +R Sbjct: 8 VKKVADELGRPLTFNVQTFGCQMNAKDSEKLAGILETIGYVESDS-EEADFVVYNTCTVR 66 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131 E A +VY +G + NLK K+ + + + GC+ Q E+I + V++V G Sbjct: 67 ENANTRVYGRIGFLGNLK----KKNPHMRIALCGCMMQESHVVEKIKKSYRFVDIVFGTH 122 Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 ++L EL+ K++V + DK + Y K GV I GC+ FC+ Sbjct: 123 NIFKLAELIYARHTTKKMVIDIWKETDKIVEELPSEQKYKFKAGVN----IMYGCNNFCS 178 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 +C+VPY RG E SR+ ++ E ++L+ GV E+ LLGQNVN++ GK LD E +F+ LL Sbjct: 179 YCIVPYVRGRERSRNPEDIIKEIKQLVSKGVVEVMLLGQNVNSY-GKTLD-EPVSFAQLL 236 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 + +++GL R+R+ T HP+D+S+ +I+ + + ++HLPVQSGS +L MNR++T Sbjct: 237 QMVEQVEGLKRIRFMTPHPKDLSNDVIEVMKNSKKICNHIHLPVQSGSTELLMKMNRKYT 296 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 +Y ++DRI+ P+I++++D IVGFPGET++DF T+D+V K+GY A++F YS R Sbjct: 297 KEDYLNLVDRIKMAMPNISLTTDIIVGFPGETEEDFLDTLDVVRKVGYDSAYTFIYSKRS 356 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-G 430 GTP + M Q+ E V ER L +RE + G+I EVL+E+ ++ L+ G Sbjct: 357 GTPAATMENQIPEEVANERFQRLLTTIRESSSKISKDDEGKIAEVLVEEVNEQDNSLMTG 416 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 R V IG+I+ V++++ K GE++ Sbjct: 417 RLSNNVLVHFKGTKELIGNIVSVKLSECKGFYYMGEMM 454 >gi|46199244|ref|YP_004911.1| hypothetical protein TTC0942 [Thermus thermophilus HB27] gi|81405796|sp|Q72J39|MIAB_THET2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|46196869|gb|AAS81284.1| conserved hypothetical protein [Thermus thermophilus HB27] Length = 465 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 169/444 (38%), Positives = 258/444 (58%), Gaps = 19/444 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + +YGCQMN YDS + S G+E V+S+++AD +++NTC +R K EKV S LG Sbjct: 27 RAHIITYGCQMNEYDSHLVASELVSLGWELVDSVEEADFVLVNTCAVRGKPVEKVRSLLG 86 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++R K R LL+ + GC+AQ EG+++ ++ V+V++GP LPE L + Sbjct: 87 QLRKEKERR-----GLLIGMMGCLAQLDEGQQMAKKF-GVDVLLGPGALTSLPEAL---K 137 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +R D + ED + + G ++A +TI GC+ CT+C+VP TRG E+S Sbjct: 138 ANERFFDLTFR-EDVLDYIPPPPKG-----ALSAHVTIIRGCNHHCTYCIVPTTRGPEVS 191 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ E L GV E+TLLGQNVN++ GK G +F++LL + + G+ R+R Sbjct: 192 RHPDLILKEIELLKQAGVVEVTLLGQNVNSY-GKDQPGFP-SFAELLRMVGGM-GIPRVR 248 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP + +D +I+A + + Y+HLPVQSGSDR+L+ M R + Y + I +IR Sbjct: 249 FLTSHPVNFTDDIIEAIAETPAICRYIHLPVQSGSDRVLRRMAREYRRAHYLERIRKIRE 308 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD +S+D IVGFPGET++DF+ T+ L D++GY QA+ F YSPR GTP + + Sbjct: 309 ALPDAVLSTDIIVGFPGETEEDFQETLSLYDEVGYDQAYMFIYSPRPGTPAYKHFQDLPR 368 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL+ L +K +E N VG+ +EVL+ KE+G + G V++ + Sbjct: 369 EVKVERLMRLIEKQKEWSYRRNLEWVGKTVEVLVRGEAKEEGFVQGHDRGNHPVLVPASQ 428 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 + + +V I L+GE+V Sbjct: 429 APVPGLYQVEIKQATPHLLFGEVV 452 >gi|254304069|ref|ZP_04971427.1| tRNA 2-methylthioadenosine synthase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324261|gb|EDK89511.1| tRNA 2-methylthioadenosine synthase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 435 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 160/441 (36%), Positives = 264/441 (59%), Gaps = 16/441 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV +S +++ +F + GY+ +D+AD + LNTC +RE AA +++ LG ++ L Sbjct: 8 TYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKLGELKAL 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K R ++ V GC AQ +GEE++++ PI+++V+G Q R+P+ +E+ + Sbjct: 68 KEKR-----GTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIENNESTH 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + ED+ + G ++ TA ++I GC+ FCTFC+VPY RG E S L ++ Sbjct: 123 EVYTDNEDELPPRLDAEFGSDQ----TASISITYGCNNFCTFCIVPYVRGRERSVPLEEI 178 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V + + + G EI LLGQNVN++ +G+ F+ LL + +++G +R+ + HP Sbjct: 179 VKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVRFVSPHP 236 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 RD +D +I D + LHLP+QSGS +ILK M R +T +Y ++D+I+S P +A Sbjct: 237 RDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILKKMGRGYTKEKYLALVDKIKSKIPGVA 296 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 +++D IVGFPGET++DF T+D+V K+ + ++ F YS R GT + M Q++E+VK ER Sbjct: 297 LTADIIVGFPGETEEDFLDTVDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIEESVKKER 356 Query: 391 LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNI 447 L L + + + SF+++ +I++VL+E K+ K L GR+ + V+ Sbjct: 357 LQRLME--VQNKCSFDESSKYKDKIVKVLVEGPSKKNKEVLSGRTSTNKVVLFKGDLALK 414 Query: 448 GDIIKVRITDVKISTLYGELV 468 G + V+I + K TLYGE+V Sbjct: 415 GQFVNVKINECKTWTLYGEIV 435 >gi|304389608|ref|ZP_07371570.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327161|gb|EFL94397.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 498 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 165/456 (36%), Positives = 263/456 (57%), Gaps = 36/456 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGY----------ERVNSMDD--ADLIVLNTC 70 P+ + VK+ GCQMN +DS RM + + G+ R + D ADL+VLNTC Sbjct: 3 TPRTYLVKTLGCQMNEHDSERMAGLLDAAGWVPVAEVPQKAARATNAGDGGADLVVLNTC 62 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130 +RE A K+Y LG++ ++K +R +++ V GC AQ EG +I+ R+P V+ V G Sbjct: 63 SVREAAGTKLYGHLGQLADVKRNRP----GMMIAVGGCFAQQEGSKIIDRAPWVDAVFGT 118 Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 LP LL+RA + + +E+ + V + R+ +A+++I GC+ C Sbjct: 119 HNIDALPVLLKRAEHNQ---EAAVEIEESLKVFPSVLPAH-RQSPASAWVSISVGCNNTC 174 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSD 249 TFC+VP RG E R+ + +V E + ++D G E+TLLGQNVN++ G+ G + F+D Sbjct: 175 TFCIVPSLRGRERDRNPADIVAEVKAVVDAGALEVTLLGQNVNSY---GMSFGRRGAFAD 231 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL + + GL RLR+T+ HP ++ +I A + +MP LH P+QSGSDRIL+ M R Sbjct: 232 LLREVGKTPGLERLRFTSPHPAAFTEEVIAAMAETPTVMPSLHFPLQSGSDRILRQMRRS 291 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + + + +I+ +RS P+ AI++D IVGFPGET+ DF+ T+D++ + + AF+F YS Sbjct: 292 YRSERFLRILREVRSAIPEAAITTDVIVGFPGETEADFQDTLDVLSEARFQAAFTFIYSR 351 Query: 370 RLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-- 424 R GTP ++ +QVD + A +RLL LQ+K+ ++ N+ G+I+EVL+ G++ Sbjct: 352 RPGTPAADRDDQVDPEIVAQRYQRLLELQEKITLEE---NEKQEGRIVEVLVTAGGRKDE 408 Query: 425 -KGKLVGRSP---WLQSVVLNSKNHNIGDIIKVRIT 456 ++ GR+ + V GD + VR+T Sbjct: 409 ATARMSGRAQDNRLVHFAVPQGIKVRPGDFVTVRVT 444 >gi|311739645|ref|ZP_07713480.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium pseudogenitalium ATCC 33035] gi|311305461|gb|EFQ81529.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium pseudogenitalium ATCC 33035] Length = 520 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 162/460 (35%), Positives = 252/460 (54%), Gaps = 32/460 (6%) Query: 18 VDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 V+Q I R + V+++GCQMNV+DS R+ + GY + DLIV NTC +RE A Sbjct: 13 VEQTIADNRTYEVRTFGCQMNVHDSERISGLLEEAGYAAAGEGVEPDLIVFNTCAVRENA 72 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 +++Y LG ++ K + + + V GC+AQ + + +L +P V+ V G L Sbjct: 73 DKRLYGTLGALKKTKENHPG----MQIAVGGCLAQKDKDTVLDNAPWVDAVFGTHNMAAL 128 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 P LLERAR + + D E V R+ ++++ GC+ CTFC+VP Sbjct: 129 PTLLERARHND---EAQVEIVDSLEAFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVP 184 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLY 252 RG E R ++ E + L+D GV E+TLLGQNVNA+ + ++ FS LL Sbjct: 185 SLRGKEEDRRPGDILAEVKALVDQGVSEVTLLGQNVNAYGVNFADPNMPRDRFAFSKLLR 244 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 + +I+GL RLR+T+ HP + + +I A + + P LH+P+QSGSD++LK M R + Sbjct: 245 EVGKIEGLERLRFTSPHPAEFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMRRSYRT 304 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 ++ +I+D +R P AI++D IVGFPGET++DF+ TM+LV + +A AF+F+YSPR G Sbjct: 305 KKFLRILDEVRDKIPHAAITTDIIVGFPGETEEDFQDTMELVRRARFASAFTFQYSPRPG 364 Query: 373 TPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---- 425 TP + M +Q+ + V + ERL+ LQ + Q N +G +E+L++ G K Sbjct: 365 TPAAEMEDQIPKEVVQDRFERLVALQDSI---QAEANKMLIGTDVELLVQAEGGRKNDET 421 Query: 426 ---------GKLVGRSPWLQSVVLNSKNHNIGDIIKVRIT 456 G+LV +P S GD++ ++T Sbjct: 422 HRMTGRARDGRLVHFTPVDSDGTDISAEIRPGDVVHTQVT 461 >gi|146299610|ref|YP_001194201.1| RNA modification protein [Flavobacterium johnsoniae UW101] gi|229890535|sp|A5FIU2|MIAB_FLAJ1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|146154028|gb|ABQ04882.1| RNA modification enzyme, MiaB family [Flavobacterium johnsoniae UW101] Length = 481 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 173/460 (37%), Positives = 261/460 (56%), Gaps = 24/460 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGC MN DS + + GY + +++ADL+++NTC IR+KA + + L Sbjct: 24 KKLFIESYGCAMNFSDSEVVASILSDGGYNTTSVLEEADLVLVNTCSIRDKAEQTIRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K + K + V V GC+A+ + L IV++VVGP Y LP LL Sbjct: 84 EKYNAVKRTNPK----MKVGVLGCMAERLKSQFLEEEKIVDLVVGPDAYKDLPNLLAEVE 139 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ ++ S E+ + +S V N G+TA ++I GCD CTFCVVP+TRG E S Sbjct: 140 EGRDAINVILSKEETYGDISPVRLMSN---GITALVSITRGCDNMCTFCVVPFTRGRERS 196 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEKCT---FSDLL 251 R ++ E + L G EITLLGQNV++ W G GL + +K T F LL Sbjct: 197 REPQSIMAEIQDLWSKGFKEITLLGQNVDSYLWYGGGLKKDFVNASEMQKATAVDFDQLL 256 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++ +R+R++TS+P+DM + ++ + ++HLPVQSGS+RILK MNR H+ Sbjct: 257 EMVAVGFPKMRIRFSTSNPQDMHESILHVMAKYPNICKHIHLPVQSGSNRILKEMNRLHS 316 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY +ID+IR++ PD +IS D I GFP ET+ D + TM L++ + Y + + YS R Sbjct: 317 REEYMALIDKIRAIVPDASISQDMIAGFPTETEQDHQDTMSLMEYVKYNFGYMYSYSERP 376 Query: 372 GT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSF-NDACVGQIIEVLIEK-HGKEKGKL 428 GT G M + V+E KA RL + L+++ F ++ VG+ +EVL+EK K K + Sbjct: 377 GTLAGRKMKDDVEEETKARRLQEIV-DLQQKHAWFRSEEFVGKTVEVLVEKVSKKSKDEF 435 Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 GR+ +VV +N+ IGD + V+IT TL GE V Sbjct: 436 SGRNSQSITVVFPKENYKIGDFVNVKITSCTSGTLKGEAV 475 >gi|221194392|ref|ZP_03567449.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium rimae ATCC 49626] gi|221185296|gb|EEE17686.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium rimae ATCC 49626] Length = 455 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 169/455 (37%), Positives = 258/455 (56%), Gaps = 20/455 (4%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +V + + +K++GCQMN++DS R+ + G V S DDAD+++ TC +RE A +++Y Sbjct: 7 LVGKTYHIKTFGCQMNLHDSERVRGLLDVCGCNEVESTDDADIVIFMTCSVRENADQRLY 66 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 G+ + ++ G +V + GC+AQ +GE + ++ P V+VV G +P LL Sbjct: 67 ---GQASAMVSAPTPPSGKRVVAIGGCIAQRDGEALKKKVPAVDVVFGTSALASVPSLLS 123 Query: 142 RARFGKRVVDTDYSVE-DKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 A D D SV+ D E D +R + A++ I GC+ FCT+C+VPY Sbjct: 124 AA-----FADDDDSVKVDTSEEHKGFSTDLPSHRDQVFHAWVPIMTGCNNFCTYCIVPYV 178 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG E SR+ VV E +L+ +GV EITLLGQNVN++ G+ L G F++LL ++ + Sbjct: 179 RGRERSRTFEAVVGECERLVADGVREITLLGQNVNSY-GRDLYGTP-RFAELLRAVGKT- 235 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ RLR+T+S+P+D++D I A + +MP+LHL VQSGS RILK MNR +T EY + Sbjct: 236 GIERLRFTSSNPKDLTDETIAAMKETPAVMPHLHLAVQSGSTRILKKMNRSYTREEYLDL 295 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + R+++ PDIA S+D IVGFPGET++DF T+ LV + Y+ A++F YS R GTP + Sbjct: 296 VHRLKAAMPDIAFSTDIIVGFPGETEEDFEQTLSLVKEAAYSSAYTFIYSKRPGTPAAKF 355 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQS 437 + V ER L + +Q N + + VL+E K + +VG S Q+ Sbjct: 356 EDNTSHEVIQERFNRLTDLVAKQAFEANQKDLHTTVSVLVENTSKRDNRVMVGHSEKNQT 415 Query: 438 VVL-----NSKNHNIGDIIKVRITDVKISTLYGEL 467 V + + IG I+ V + + L G L Sbjct: 416 VHFVLPEGHVSDDYIGKIVDVYVEKARTWYLKGTL 450 >gi|70726621|ref|YP_253535.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus haemolyticus JCSC1435] gi|123734986|sp|Q4L5Z6|MIAB_STAHJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|68447345|dbj|BAE04929.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 514 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 164/443 (37%), Positives = 260/443 (58%), Gaps = 15/443 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K+YGCQMN +D+ M + + GY +++AD+I++NTC IRE A KV+S +G Sbjct: 70 FLIKTYGCQMNAHDTEVMAGILQALGYTATEDINEADVILINTCAIRENAENKVFSEIGN 129 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++LK +R + L+ V GC++Q E +IL+ V+++ G ++LPE+LE A Sbjct: 130 LKHLKKNR----PEALIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAY 185 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K +V +S E D E L V R+ A++ I GCDKFCT+C+VP+TRG E Sbjct: 186 LSKAMVVEVWSKEGDIIENLPKV-----REGSTKAWVNIMYGCDKFCTYCIVPFTRGKER 240 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++E R L +G EITLLGQNVN++ GK + + DLL +S+I + R+ Sbjct: 241 SRRPEDIIEEVRGLARDGYKEITLLGQNVNSY-GKDIKDLEYGLGDLLEDISKID-IPRV 298 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP D +D +I+ ++P++HLPVQSG++ +LK M R++T Y +++RI+ Sbjct: 299 RFTTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIK 358 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++A+++D IVG+P ET++ F T+ L D++ + A+++ YS R GTP + M + V Sbjct: 359 KSIPNVALTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVP 418 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNS 442 E+VK RL L KK+ + G+ + VL E K+ L G + + V Sbjct: 419 EDVKKARLQRLNKKVGHYSEKAMNQYEGKTVTVLCEGSSKKDDTVLAGYTEKNKLVNFKG 478 Query: 443 KNHNIGDIIKVRITDVKISTLYG 465 IG ++ V I + K +L G Sbjct: 479 PREAIGKLVNVEIDETKQYSLNG 501 >gi|237733845|ref|ZP_04564326.1| tRNA 2-methylthioadenine synthetase [Mollicutes bacterium D7] gi|229383183|gb|EEO33274.1| tRNA 2-methylthioadenine synthetase [Coprobacillus sp. D7] Length = 415 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 164/422 (38%), Positives = 247/422 (58%), Gaps = 14/422 (3%) Query: 50 SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109 S Y+ + +AD+IVLNTC IRE A EKV+ +G ++NLK K +L+ + GC+ Sbjct: 3 SMSYQPTTEIKEADVIVLNTCAIRENAEEKVFGKVGYVKNLK----KTNPNLIFAMCGCM 58 Query: 110 AQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167 AQ E IL + P V+++ G +RLPELL+ A + K ++ +S E I + Sbjct: 59 AQEEVVVNRILEKHPHVDLIFGTHNIHRLPELLKDALYSKEMIVEVWSKEGDV----IEN 114 Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227 R A++ I GC+KFCT+C+VPYTRG E SR ++ E +L+ G EITL Sbjct: 115 APVRRDNKYKAWVNIMYGCNKFCTYCIVPYTRGKERSRLAKDIIKEVEELVAEGYQEITL 174 Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287 LGQNVN++ GK L GE FS+LL +++ + R+R+TTSHP D S+ +IK D + Sbjct: 175 LGQNVNSY-GKDL-GEDYNFSNLLEDVAKT-NIPRIRFTTSHPWDFSEDMIKIIAKYDNI 231 Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347 MP +HLPVQSG++ +LK M RR++ +Y ++ +I+ PD +++D IVGFP ET + + Sbjct: 232 MPAIHLPVQSGNNEVLKLMGRRYSREQYLELFHKIKEYIPDCTVTTDIIVGFPNETHEQY 291 Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407 T+ L + Y A++F YSPR GTP + M++ V + K +RL L + + E+ N Sbjct: 292 LDTLSLYQECEYDLAYTFVYSPRAGTPAAKMVDNVASDEKDQRLYKLNEIVNEKAYKQNQ 351 Query: 408 ACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 + +I+EVL+E K+ L G + + V +IG IIKV+IT+ K L GE Sbjct: 352 RFLNKIVEVLVEGTSKKDDSMLTGYTRHQKLVNFKGDPKDIGKIIKVKITEAKTWALKGE 411 Query: 467 LV 468 + Sbjct: 412 SI 413 >gi|160880731|ref|YP_001559699.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium phytofermentans ISDg] gi|160429397|gb|ABX42960.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium phytofermentans ISDg] Length = 487 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 164/458 (35%), Positives = 265/458 (57%), Gaps = 14/458 (3%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 V ++ D+ P F V+++GCQMN DS ++ + + GY +S ++AD +V NTC +R Sbjct: 39 VKKVADELGRPLTFNVQTFGCQMNAKDSEKLAGILETIGYVESDS-EEADFVVYNTCTVR 97 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131 E A +VY +G + NLK K+ + + + GC+ Q E+I + V++V G Sbjct: 98 ENANTRVYGRIGFLGNLK----KKNPHMRIALCGCMMQESHVVEKIKKSYRFVDIVFGTH 153 Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 ++L EL+ K++V + DK + Y K GV I GC+ FC+ Sbjct: 154 NIFKLAELIYARHTTKKMVIDIWKETDKIVEELPSEQKYKFKAGVN----IMYGCNNFCS 209 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 +C+VPY RG E SR+ ++ E ++L+ GV E+ LLGQNVN++ GK LD E +F+ LL Sbjct: 210 YCIVPYVRGRERSRNPEDIIKEIKQLVSKGVVEVMLLGQNVNSY-GKTLD-EPVSFAQLL 267 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 + +++GL R+R+ T HP+D+S+ +I+ + + ++HLPVQSGS +L MNR++T Sbjct: 268 QMVEQVEGLKRIRFMTPHPKDLSNDVIEVMKNSKKICNHIHLPVQSGSTELLMKMNRKYT 327 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 +Y ++DRI+ P+I++++D IVGFPGET++DF T+D+V K+GY A++F YS R Sbjct: 328 KEDYLNLVDRIKMAMPNISLTTDIIVGFPGETEEDFLDTLDVVRKVGYDSAYTFIYSKRS 387 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-G 430 GTP + M Q+ E V ER L +RE + G+I EVL+E+ ++ L+ G Sbjct: 388 GTPAATMENQIPEEVANERFQRLLTTIRESSSKISKDDEGKIAEVLVEEVNEQDNSLMTG 447 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 R V IG+I+ V++++ K GE++ Sbjct: 448 RLSNNVLVHFKGTKELIGNIVSVKLSECKGFYYMGEMM 485 >gi|213963289|ref|ZP_03391546.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sputigena Capno] gi|213954151|gb|EEB65476.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sputigena Capno] Length = 482 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 172/459 (37%), Positives = 260/459 (56%), Gaps = 22/459 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + GY +++DDADL+++NTC +REKA + + L Sbjct: 24 KKLYIESYGCQMNFSDSEIVASILSKVGYNTTDTVDDADLVLINTCSVREKAEQTIRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + K ++ + V V GC+A+ L IV++VVGP Y LP LLE Sbjct: 84 EQFNVYK----RKKPTMKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEEVD 139 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V+ S ++ + ++ + N GVTAF++I GCD CTFC+VP+TRG E S Sbjct: 140 EGREAVNVILSKDETYADIAPIRLNSN---GVTAFVSITRGCDNMCTFCIVPFTRGRERS 196 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251 R +++E L G E+TLLGQNV++ W G GL D K + F+ LL Sbjct: 197 RDPYSILNEIADLQARGFKEVTLLGQNVDSYLWYGGGLKKDFSKASEMQQATAINFAKLL 256 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++ + +R+R++TS+P+DM+ +I + Y+HLPVQSGS+RILK+MNR HT Sbjct: 257 DMVATAQPEMRIRFSTSNPQDMTLDVIDTMAKHPNICKYIHLPVQSGSNRILKAMNRLHT 316 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY +ID IR P+ AIS D I GFP ET++D R T+ L++ + Y F F YS R Sbjct: 317 REEYFTLIDSIRERIPECAISQDMIAGFPTETEEDHRDTLSLMEYVKYDFGFMFAYSERP 376 Query: 372 GTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLV 429 GT + +E V E VK RL + ++ + A VG+++EVLIE K+ + + Sbjct: 377 GTLAARKIEDDVPEEVKKRRLAEIIDLQQKHSLYRTQAQVGKVVEVLIEGTSKKSADEWM 436 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 GR+ VV +N+ +GD + V IT+ +TL G+ + Sbjct: 437 GRNTQNTVVVFPKENYKVGDFVLVEITNCTSTTLIGKAI 475 >gi|291519342|emb|CBK74563.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Butyrivibrio fibrisolvens 16/4] Length = 477 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 171/448 (38%), Positives = 260/448 (58%), Gaps = 23/448 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GCQMN DS ++ + GY S ++AD ++ NTC +RE A KVY LG + Sbjct: 44 VTTFGCQMNARDSEKLLGILKQIGYVETES-ENADFVIYNTCTVRENANNKVYGHLGILH 102 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 K K+ D+++ + GC+ Q E + V+++ G Y+ EL A Sbjct: 103 GYK----KKNKDMMIGLCGCMMQEPTVIEHLKANYKFVDLIFGTHNLYKFAELFTTALLN 158 Query: 147 KR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K+ ++D + E L I +RK + + I GC+ FC++C+VPY RG E S Sbjct: 159 KKGMIIDIWKDTDKIVENLPI-----SRKYPFKSGVNISFGCNNFCSYCIVPYVRGRERS 213 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +V E ++L+ +GV E+ LLGQNVN++ G GL+ EK +F+DLL +++I+GL R+R Sbjct: 214 RKPEDIVAEIKELVADGVVEVMLLGQNVNSY-GVGLE-EKISFADLLRMVNDIEGLKRIR 271 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + T HP+D+SD LI+A D + ++HLP+QSGS ILK MNRR+T Y +++++R+ Sbjct: 272 FMTPHPKDLSDDLIEAMATCDKVCHHMHLPLQSGSTEILKKMNRRYTKEHYLGLVEKLRA 331 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD+AI++D IVGFPGET++DF TMD+VDK+ Y AF+F YS R GTP + M QV E Sbjct: 332 RIPDVAITTDIIVGFPGETEEDFLDTMDVVDKVHYDSAFTFIYSKRTGTPAAAMENQVPE 391 Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVL 440 +V + +RLL L +K +V + G + EVL+E+ ++ LV G+ +V Sbjct: 392 DVVKDRFDRLLALVQKHGHDKVK---SLEGTVQEVLVEEVNEQDNTLVSGKLANNVTVHF 448 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG I+ VR+ K GE+ Sbjct: 449 PGDESMIGKIVNVRLNCCKGFYFIGEIA 476 >gi|55981277|ref|YP_144574.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermus thermophilus HB8] gi|81364777|sp|Q5SME9|MIAB_THET8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|55772690|dbj|BAD71131.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 465 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 169/444 (38%), Positives = 258/444 (58%), Gaps = 19/444 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + +YGCQMN YDS + S G+E V+S+++AD +++NTC +R K EKV S LG Sbjct: 27 RAHIITYGCQMNEYDSHLVASELVSLGWELVDSVEEADFVLVNTCAVRGKPVEKVRSLLG 86 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++R K R LL+ + GC+AQ EG+++ ++ V+V++GP LPE L + Sbjct: 87 QLRKEKERR-----GLLIGMMGCLAQLDEGQQMAKKF-GVDVLLGPGALTSLPEAL---K 137 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +R D + ED + + G ++A +TI GC+ CT+C+VP TRG E+S Sbjct: 138 ANERFWDLTFR-EDVLDYIPPPPKG-----ALSAHVTIIRGCNHHCTYCIVPTTRGPEVS 191 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ E L GV E+TLLGQNVN++ GK G +F++LL + + G+ R+R Sbjct: 192 RHPDLILKEIELLKQAGVVEVTLLGQNVNSY-GKDQPGFP-SFAELLRMVGGM-GIPRVR 248 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP + +D +I+A + + Y+HLPVQSGSDR+L+ M R + Y + I +IR Sbjct: 249 FLTSHPVNFTDDIIEAIAETPAICRYIHLPVQSGSDRVLRRMAREYRRAHYLERIRKIRE 308 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD +S+D IVGFPGET++DF+ T+ L D++GY QA+ F YSPR GTP + + Sbjct: 309 ALPDAVLSTDIIVGFPGETEEDFQETLSLYDEVGYDQAYMFIYSPRPGTPAYKHFQDLPR 368 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL+ L +K +E N VG+ +EVL+ KE+G + G V++ + Sbjct: 369 EVKVERLMRLIEKQKEWSYRRNLEWVGKTVEVLVRGEAKEEGFVQGHDRGNHPVLVPASQ 428 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 + + +V I L+GE+V Sbjct: 429 APVPGLYQVEIKQATPHLLFGEVV 452 >gi|269215580|ref|ZP_06159434.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC 700122] gi|269131067|gb|EEZ62142.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC 700122] Length = 454 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 178/460 (38%), Positives = 275/460 (59%), Gaps = 33/460 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F+ +YGCQMN +DS R+ + S G V++++++++++ TC +RE+A ++ + Sbjct: 10 KTFYTFTYGCQMNEHDSERIAGLLESCGCVPVSTLEESEIVIFMTCCVRERADIRL---M 66 Query: 85 GRIRNLKNSRIKEGGDL---LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 G++ +K + EG L +V + GC+ Q +G + V+VV G Q RLP L+ Sbjct: 67 GQVSTIKGVPLPEGSALDKRIVCIGGCIGQRDGIALTETLDNVDVVFGTQNIERLPYLIT 126 Query: 142 RA-RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G V+ + D F D +R++ +A+L I GCD FCTFC+VPY RG Sbjct: 127 GVLSQGGHFVEIEQD-SDSFS----TDLPSDREKPWSAWLPITVGCDNFCTFCIVPYVRG 181 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR++ VV A + GV EITLLGQNVN++ G+ L G F+D+L +++ G+ Sbjct: 182 RERSRAIEDVVMNAEAYVAEGVKEITLLGQNVNSY-GRDLYGSP-RFADVLKAVAA-TGV 238 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR+ TSHP+D++D +I A G+LD LMP LHLPVQSGSDRIL+ MNR + + Y ++ Sbjct: 239 ERLRFATSHPKDLTDEVIAAFGELDNLMPALHLPVQSGSDRILEDMNRTYDSAHYLGLVR 298 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R+ PDIA+S+D IVGFPGET++DF+AT DL++ +GY+Q F+F YS R GTP ++M + Sbjct: 299 KLRASCPDIALSTDVIVGFPGETEEDFQATYDLIESVGYSQVFTFIYSRREGTPAADMFD 358 Query: 381 QVDENV---KAERLLCL-QKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435 +V + +RL+ L Q+K EQ F +G+ ++VL E ++ LVG SP Sbjct: 359 DTPRDVIQRRFDRLVELVQRKALEQNRRF----LGRDLDVLFEGPSRRDPSMLVGHSP-- 412 Query: 436 QSVVLNSK-------NHNIGDIIKVRITDVKISTLYGELV 468 +V +++ + +G V I + K L G LV Sbjct: 413 HNVTVHAPLPAGMDASAFVGRTCLVHIDEAKTWYLSGTLV 452 >gi|326334454|ref|ZP_08200666.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693421|gb|EGD35348.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 481 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 178/466 (38%), Positives = 264/466 (56%), Gaps = 36/466 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + +G+ + + +ADLI++NTC +REKA + + L Sbjct: 24 RKLYIESYGCQMNFSDSEIVASILHKEGFNTTDKLHEADLILINTCSVREKAEQTIRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K + + V V GC+A+ + L IV++VVGP Y LP LL Sbjct: 84 EQFNTVKRHKPA----MRVGVLGCMAERLKHKFLEEEHIVDLVVGPDAYKDLPNLLTEVD 139 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V+ S ++ + +S + N GVTAF++I GCD CTFC+VP+TRG E S Sbjct: 140 NGRDAVNVQLSKDETYADISPIRLNSN---GVTAFVSITRGCDNMCTFCIVPFTRGRERS 196 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251 R +++E +L G EITLLGQNV++ W G GL D EK + F+ LL Sbjct: 197 RDPHSIINEIAELQQRGYKEITLLGQNVDSYLWYGGGLKKDFEKASDIQKVTAVNFAKLL 256 Query: 252 YSLSEIKGLVRLRYTTSHPRDMS----DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 ++ +R+R++TS+P+DM+ D + K H + Y+HLPVQSGS+RILK+MN Sbjct: 257 DIVASEFPKMRIRFSTSNPQDMTLDVIDTMAKHHN----ICKYIHLPVQSGSNRILKAMN 312 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R HT EY +ID IR PD AIS D I GFP ET++D + T+ L++ + Y F F Y Sbjct: 313 RLHTREEYFALIDGIRERIPDCAISQDMITGFPTETEEDHQDTLSLMEYVKYDFGFMFAY 372 Query: 368 SPRLGT-PGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 S R GT +L+ V E VK RL + LQ+K + A VG+ +EVLIE + K Sbjct: 373 SERPGTLAARKILDDVPEEVKKRRLAEIIDLQQKHSHYRTQ---AQVGKTVEVLIEGNSK 429 Query: 424 EKGK-LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + +GR+ VV + + +GD + V+IT+ +TL GE V Sbjct: 430 KSDQEWMGRNTQNTVVVFPKEQYKVGDFVNVKITNCTSTTLIGEAV 475 >gi|315656851|ref|ZP_07909738.1| tRNA 2-methylthioadenine synthetase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492806|gb|EFU82410.1| tRNA 2-methylthioadenine synthetase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 498 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 166/456 (36%), Positives = 263/456 (57%), Gaps = 36/456 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGY----------ERVNSMDD--ADLIVLNTC 70 P+ + VK+ GCQMN +DS RM + + G+ R + D ADL+VLNTC Sbjct: 3 TPRTYLVKTLGCQMNEHDSERMAGLLDAAGWVPVAEVPQKAARATNAGDGGADLVVLNTC 62 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130 +RE A K+Y LG++ ++K +R +++ V GC AQ EG +I+ R+P V+ V G Sbjct: 63 SVREAAGTKLYGHLGQLADVKRNRP----GMMIAVGGCFAQQEGSKIIDRAPWVDAVFGT 118 Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 LP LL+RA + + +E+ + V +R+ +A+++I GC+ C Sbjct: 119 HNIDALPVLLKRAEHNQ---EAAVEIEESLKVFPSVLP-VHRQSPASAWVSISVGCNNTC 174 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSD 249 TFC+VP RG E R+ + +V E + ++D G E+TLLGQNVN++ G+ G + F+D Sbjct: 175 TFCIVPSLRGRERDRNPADIVAEVKAVVDAGALEVTLLGQNVNSY---GMSFGRRGAFAD 231 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL + + GL RLR+T+ HP ++ +I A + +MP LH P+QSGSDRIL+ M R Sbjct: 232 LLREVGKTPGLERLRFTSPHPAAFTEEVIAAMAETPTVMPSLHFPLQSGSDRILRQMRRS 291 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + + + +I+ +RS P+ AI++D IVGFPGET+ DF+ T+D++ + + AF+F YS Sbjct: 292 YRSERFLRILREVRSAIPEAAITTDVIVGFPGETEADFQDTLDVLSEARFQAAFTFIYSR 351 Query: 370 RLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-- 424 R GTP ++ +QVD V A +RLL LQ+K+ ++ N+ G+I+EVL+ G++ Sbjct: 352 RPGTPAADRDDQVDPEVVAQRYQRLLELQEKITLEE---NEKQEGRIVEVLVTAGGRKDE 408 Query: 425 -KGKLVGRSP---WLQSVVLNSKNHNIGDIIKVRIT 456 ++ GR+ + V GD + VR+T Sbjct: 409 ATARMSGRAQDNRLVHFAVPQGIKVRPGDFVTVRVT 444 >gi|315655228|ref|ZP_07908129.1| tRNA-I(6)A37 thiotransferase [Mobiluncus curtisii ATCC 51333] gi|315490483|gb|EFU80107.1| tRNA-I(6)A37 thiotransferase [Mobiluncus curtisii ATCC 51333] Length = 498 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 166/456 (36%), Positives = 262/456 (57%), Gaps = 36/456 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGY----------ERVNSMDD--ADLIVLNTC 70 P+ + VK+ GCQMN +DS RM + + G+ R + D ADL+VLNTC Sbjct: 3 TPRTYLVKTLGCQMNEHDSERMAGLLDAAGWVPVAEVPQKAARATNAGDGGADLVVLNTC 62 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130 +RE A K+Y LG++ ++K +R +++ V GC AQ EG +I+ R+P V+ V G Sbjct: 63 SVREAAGTKLYGHLGQLADVKRNRP----GMMIAVGGCFAQQEGSKIIDRAPWVDAVFGT 118 Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 LP LL+RA + + +E+ + V + R+ +A+++I GC+ C Sbjct: 119 HNIDALPILLKRAEHNQ---EAAVEIEESLKVFPSVLPAH-RQSPASAWVSISVGCNNTC 174 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSD 249 TFC+VP RG E R+ + +V E + ++D G E+TLLGQNVN++ G+ G + F+D Sbjct: 175 TFCIVPSLRGRERDRNPADIVAEVKAVVDAGALEVTLLGQNVNSY---GMSFGRRGAFAD 231 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL + + GL RLR+T+ HP ++ +I A + +MP LH P+QSGSDRIL+ M R Sbjct: 232 LLREVGKTPGLERLRFTSPHPAAFTEEVIAAMAETPTVMPSLHFPLQSGSDRILRQMRRS 291 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + + + +I+ +RS P AI++D IVGFPGET+ DF+ T+D++ + + AF+F YS Sbjct: 292 YRSERFLRILREVRSAIPKAAITTDVIVGFPGETEADFQDTLDVLSEARFQAAFTFIYSR 351 Query: 370 RLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-- 424 R GTP ++ +QVD V A +RLL LQ+K+ ++ N+ G+I+EVL+ G++ Sbjct: 352 RPGTPAADRDDQVDPEVVAQRYQRLLELQEKITLEE---NEKQEGRIVEVLVTAGGRKDE 408 Query: 425 -KGKLVGRSP---WLQSVVLNSKNHNIGDIIKVRIT 456 ++ GR+ + V GD + VR+T Sbjct: 409 ATARMSGRAQDNRLVHFAVPQGVKVRPGDFVTVRVT 444 >gi|255325173|ref|ZP_05366279.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium tuberculostearicum SK141] gi|255297738|gb|EET77049.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium tuberculostearicum SK141] Length = 520 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 161/460 (35%), Positives = 254/460 (55%), Gaps = 32/460 (6%) Query: 18 VDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 V+Q I R + V+++GCQMNV+DS R+ + GY + DLIV NTC +RE A Sbjct: 13 VEQTIADNRTYEVRTFGCQMNVHDSERISGLLEEAGYAAAGEGVEPDLIVFNTCAVRENA 72 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 +++Y LG ++ K + + + V GC+AQ + + +L +P V+ V G L Sbjct: 73 DKRLYGTLGALKKTKENHPG----MQIAVGGCLAQKDKDTVLDNAPWVDAVFGTHNMAAL 128 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 P LLERAR + + D E V R+ ++++ GC+ CTFC+VP Sbjct: 129 PTLLERARHND---EAQVEIVDSLEAFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVP 184 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLY 252 RG E R ++ E + L+D GV E+TLLGQNVNA+ + ++ FS LL Sbjct: 185 SLRGKEEDRRPGDILAEVKALVDQGVSEVTLLGQNVNAYGVNFADPDMPRDRFAFSKLLR 244 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 + +I+GL RLR+T+ HP + + +I A + + P LH+P+QSGSD++LK M R + Sbjct: 245 EVGKIEGLERLRFTSPHPAEFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMRRSYRT 304 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 ++ +I+D +R P AI++D IVGFPGET++DF+ TM+LV + +A AF+F+YSPR G Sbjct: 305 KKFLRILDEVRDKIPHAAITTDIIVGFPGETEEDFQDTMELVRRARFASAFTFQYSPRPG 364 Query: 373 TPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---- 425 TP + M +Q+ + V + ERL+ LQ ++ ++ N +G +E+L++ G K Sbjct: 365 TPAAEMEDQIPKEVVQDRFERLVALQDSIQAEE---NKKLIGTDVELLVQAEGGRKNDET 421 Query: 426 ---------GKLVGRSPWLQSVVLNSKNHNIGDIIKVRIT 456 G+LV +P S GD++ ++T Sbjct: 422 HRMTGRARDGRLVHFTPVDSDGTDISAEIRPGDVVHTQVT 461 >gi|225027640|ref|ZP_03716832.1| hypothetical protein EUBHAL_01899 [Eubacterium hallii DSM 3353] gi|224954954|gb|EEG36163.1| hypothetical protein EUBHAL_01899 [Eubacterium hallii DSM 3353] Length = 483 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 172/446 (38%), Positives = 259/446 (58%), Gaps = 14/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F+ +++GCQMN DS ++ + GY + ++ + AD + NTC +RE A +VY LG Sbjct: 47 FYDQTFGCQMNFKDSEKLNGILEDIGYVKADT-EKADFVYYNTCTVRENANVRVYGRLGA 105 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++N K K+ ++++ + GC+ Q E E++ V+VV G ++L ELL Sbjct: 106 LKNYK----KKNPEMVIAMCGCMMQEPEEQEKVKTTFKFVDVVFGTHNIFKLAELLYECL 161 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ V + V +K +++ I D +RK G A + I GC+ FC++C+VPY RG E S Sbjct: 162 SGRKRV---FDVWEKTDQI-IEDLPSDRKFGFKAGVNIMFGCNNFCSYCIVPYVRGRERS 217 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +V E +KL GV E+ LLGQNVN++ GK L+ +F+ LL + E++G+ R+R Sbjct: 218 RKPEDIVAEVKKLASEGVVEVMLLGQNVNSY-GKNLEN-PISFAKLLTMVEEVEGIERIR 275 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D+SD LI+ + +LHLPVQSGS RILK MNR++T Y +++D+IR+ Sbjct: 276 FMTSHPKDLSDELIEVMAHSKKICKHLHLPVQSGSSRILKLMNRKYTKEHYLELVDKIRT 335 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PDIAI++D IVGFPGET++DF+ T+D+V K Y AF+F YS R GTP + M +QV + Sbjct: 336 AVPDIAITTDIIVGFPGETEEDFQETLDVVRKAKYDSAFTFIYSKRSGTPAAKMPDQVPD 395 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSK 443 +V ER L K + E N G VL+E+ K+ + GR V Sbjct: 396 DVVHERFDRLLKVVNEAAKEQNGKLTGNTELVLVEEIDEKDDTMVTGRLSNNSVVHFKGD 455 Query: 444 NHNIGDIIKVRITDVKISTLYGELVV 469 IG I+ V + + K G L V Sbjct: 456 ASLIGKIVPVVLEESKGFYYLGRLSV 481 >gi|300744000|ref|ZP_07073020.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia dentocariosa M567] gi|300380361|gb|EFJ76924.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Rothia dentocariosa M567] Length = 505 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 157/450 (34%), Positives = 268/450 (59%), Gaps = 30/450 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ + V+++GCQMNV+DS RM + + GY R ++ DL+V NTC +RE A+ ++Y Sbjct: 16 TPRTYEVRTFGCQMNVHDSERMSGLLEANGYVRAAEGEEPDLVVFNTCAVRENASNRLYG 75 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LG++ ++K R EG + + V GC+AQ + I+ ++P V+VV G LP LLER Sbjct: 76 HLGQLASVK--RRHEG--MQIAVGGCLAQKDQNTIIEKAPWVDVVFGTHNIGSLPTLLER 131 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRG 200 AR + + E L + KR + +++I GC+ CTFC+VP RG Sbjct: 132 ARHNHE------AQAELLESLEVFPSTLPTKRDHVYSGWVSISVGCNNTCTFCIVPSLRG 185 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259 E R ++ E + L+D+G E+TLLGQNVN++ G++ G++ FS LL + +I+G Sbjct: 186 KEKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSY---GVEFGDRQAFSKLLRACGDIEG 242 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+T+ HP +D +I+A + +MP LH+P+QSGSD++LK M R + + ++ I+ Sbjct: 243 LERVRFTSPHPAMFTDDVIEAMAETPNVMPVLHMPLQSGSDKVLKDMRRSYRSKKFLGIL 302 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +++R P I++D IVGFPGE+++DF+ T+ +V++ ++ AF+F+YS R GTP + M Sbjct: 303 EKVRERIPHAVITTDIIVGFPGESEEDFQDTLRVVEQARFSSAFTFQYSIRPGTPAATME 362 Query: 380 EQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI----EKHGKEKGKLVGRS 432 Q+ +++ + ERL+ LQ ++ ++ N +G+ +E+++ + ++ +L GR Sbjct: 363 NQIPKDIVQERYERLVALQDRIAGEE---NRKQLGKTVELMVVAESGRKAQQTHRLAGRG 419 Query: 433 PWLQ----SVVLNSKNHNIGDIIKVRITDV 458 P + SV + GD++ V IT+ Sbjct: 420 PDQRLVHFSVPAGCEEPRPGDMVTVPITEA 449 >gi|298346683|ref|YP_003719370.1| putative tRNA 2-methylthioadenine synthetase [Mobiluncus curtisii ATCC 43063] gi|298236744|gb|ADI67876.1| possible tRNA 2-methylthioadenine synthetase [Mobiluncus curtisii ATCC 43063] Length = 498 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 165/456 (36%), Positives = 263/456 (57%), Gaps = 36/456 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGY----------ERVNSMDD--ADLIVLNTC 70 P+ + VK+ GCQMN +DS RM + + G+ R + D ADL+VLNTC Sbjct: 3 TPRTYLVKTLGCQMNEHDSERMAGLLDAAGWVPVAEVPQKAARATNAGDGGADLVVLNTC 62 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130 +RE A K+Y LG++ ++K +R +++ V GC AQ EG +I+ R+P V+ V G Sbjct: 63 SVREAAGTKLYGHLGQLADVKRNR----PGMMIAVGGCFAQQEGSKIIDRAPWVDAVFGT 118 Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 LP LL+RA + + +E+ + V + R+ +A+++I GC+ C Sbjct: 119 HNIDALPVLLKRAEHNQ---EAAVEIEESLKVFPSVLPAH-RQSPASAWVSISVGCNNTC 174 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSD 249 TFC+VP RG E R+ + +V E + ++D G E+TLLGQNVN++ G+ G + F+D Sbjct: 175 TFCIVPSLRGRERDRNPADIVAEVKAVVDAGALEVTLLGQNVNSY---GMSFGRRGAFAD 231 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL + + GL RLR+T+ HP ++ +I A + +MP LH P+QSGSDRIL+ M R Sbjct: 232 LLREVGKTPGLERLRFTSPHPAAFTEEVIAAMAETPTVMPSLHFPLQSGSDRILRQMRRS 291 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + + + +I+ +RS P+ AI++D IVGFPGET+ DF+ T+D++ + + AF+F YS Sbjct: 292 YRSERFLRILREVRSAIPEAAITTDVIVGFPGETEVDFQDTLDVLSEARFQAAFTFIYSR 351 Query: 370 RLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-- 424 R GTP ++ +QVD + A +RLL LQ+K+ ++ N+ G+I+EVL+ G++ Sbjct: 352 RPGTPAADRDDQVDPEIVAQRYQRLLELQEKITLEE---NEKQEGRIVEVLVTAGGRKDE 408 Query: 425 -KGKLVGRSP---WLQSVVLNSKNHNIGDIIKVRIT 456 ++ GR+ + V GD + VR+T Sbjct: 409 ATARMSGRAQDNRLVHFAVPQGIKVRPGDFVTVRVT 444 >gi|256825582|ref|YP_003149542.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Kytococcus sedentarius DSM 20547] gi|256688975|gb|ACV06777.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Kytococcus sedentarius DSM 20547] Length = 510 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 165/456 (36%), Positives = 268/456 (58%), Gaps = 37/456 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------DLIVLNTCHIREKA 76 P+ + V+++GCQMNV+DS R+ + GY +++++ A D++V NTC +RE A Sbjct: 5 TPKTYDVRTHGCQMNVHDSERLSGLLEGAGYTDLDAVEPAERPEVADVVVFNTCAVRENA 64 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 A K+Y LG++R K +E DL + V GC+AQ + + I+ R+P V+VV G L Sbjct: 65 ANKLYGNLGQLRQAK----RENPDLQIAVGGCLAQKDRDTIVARAPWVDVVFGTHNIGSL 120 Query: 137 PELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 P LLERAR + V+ ++E L R + +++I GC+ CTFC+V Sbjct: 121 PVLLERARHNQEAQVEILEALETFPSTLPT-----RRDSAYSGWVSISVGCNNTCTFCIV 175 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSL 254 P RG E R ++ E R L++ GV EITLLGQNVN + G++ G++ FS LL + Sbjct: 176 PALRGKEKDRRPGDILAEVRALVEQGVVEITLLGQNVNTY---GVEFGDRQAFSKLLRAC 232 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 EI+GL R+R+T+ HP +D +I A + +MP LH+P+Q+GSD++LK M R + + + Sbjct: 233 GEIEGLERVRFTSPHPAAFTDDVIDAMAETPNVMPSLHMPLQAGSDKVLKDMRRSYRSKK 292 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + I+DR+R P AI++D IVGFPGET++DF T+ +V+ ++ AF+F+YS R GTP Sbjct: 293 FLGILDRVREQIPHAAITTDLIVGFPGETEEDFAETLRVVEASRFSSAFTFQYSIRPGTP 352 Query: 375 GSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGK 427 + M +QV + V + +RL+ LQ+++ ++ N G+ +EVL+ + E + Sbjct: 353 AAEMADQVPKAVVQDRFDRLIELQERISWEE---NRTQEGRTVEVLVAPGEGRKDAETHR 409 Query: 428 LVGRSP-------WLQSVVLNSKNHNIGDIIKVRIT 456 + GR+ L + + +++ GD++ V +T Sbjct: 410 MSGRADDNRLVHFALPADLPDAERPRPGDMVTVEVT 445 >gi|260592003|ref|ZP_05857461.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella veroralis F0319] gi|260536287|gb|EEX18904.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella veroralis F0319] Length = 450 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 160/450 (35%), Positives = 273/450 (60%), Gaps = 15/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GY+ ++ D+AD I LNTC +RE A K+Y L Sbjct: 10 KKLYIETYGCQMNVADSEVVASVMKMAGYDVCDNEDEADAIFLNTCSVRENAENKIYHRL 69 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ K+G L++ V GC+A+ +++++ + N+V GP +Y LP+++ + Sbjct: 70 DTL----HAEQKKGRKLILGVLGCMAERVRDDLIQ-NHFANLVCGPDSYLNLPDMIAQCE 124 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G +D + S + + + G NR V+ F++I GC+ FC +C+VP+TRG E S Sbjct: 125 NGNNALDIELSTTETYRDVIPQRFGGNR---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 181 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260 R + ++ E + L D G E+TLLGQNVN++ G +G++ +F++LL +++ Sbjct: 182 RDVDSILKEVKDLHDKGFKEVTLLGQNVNSY-GLLPNGKRPENGTSFAELLRKVAQSVPD 240 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R+R+TTS+P DM++ +IKA L ++H P QSGS+ +L+ MNR++T +Y + +D Sbjct: 241 MRVRFTTSNPEDMTEDIIKAVASEPNLCNHIHFPAQSGSNEVLRLMNRKYTREDYLRKVD 300 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379 IR + PD +++D +G+ ET+ D++ T+ L+ ++G+ AF FKYS R GT + L Sbjct: 301 TIRRLIPDCGLTTDIFIGYHNETEADYQETLSLMREVGFDSAFMFKYSERPGTYAAKHLP 360 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 + V E+ K RL L + E N G+ E+LIE+ GK + +L+GR+P ++V Sbjct: 361 DNVSEDEKIRRLNELIRLQTEISAEQNKKDEGKEFEILIERFGKRSREQLMGRTPQNKAV 420 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V+ NH+IG+ ++VRIT +TL+GE V Sbjct: 421 VIARGNHHIGEFVRVRITGSTSATLFGEEV 450 >gi|237709181|ref|ZP_04539662.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724341|ref|ZP_04554822.1| SAM/TRAM family methylase [Bacteroides sp. D4] gi|265752708|ref|ZP_06088277.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_33FAA] gi|229437210|gb|EEO47287.1| SAM/TRAM family methylase [Bacteroides dorei 5_1_36/D4] gi|229456877|gb|EEO62598.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263235894|gb|EEZ21389.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 3_1_33FAA] Length = 456 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 166/451 (36%), Positives = 268/451 (59%), Gaps = 20/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++D+AD + +NTC IR+ A +K+ + L Sbjct: 18 KKLFIETYGCQMNVADSEVIASIMQMAGYHVCETLDEADAVFMNTCSIRDNAEQKILNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++K ++ + +L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 78 EFFHSMKKNKRR---NLIVGVLGCMAERVKDDLIENHH-VDLVVGPDAYLTLPDLVASVE 133 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FC +C+VPYTRG E Sbjct: 134 AGEKAINVELSTTETYREVIPSRICGNH-----ISGFVSIMRGCNNFCHYCIVPYTRGRE 188 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E R L G E+TLLGQNVN++R + +GE TF LL +++E +R Sbjct: 189 RSRDVESILNEVRDLAAKGYKEVTLLGQNVNSYRFEK-EGEIITFPMLLRTVAEAVPDMR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++T Y + + I Sbjct: 248 VRFTTSHPKDMSDETLQVIAETPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD +S+D G+ ET++D + ++ L+ + Y AF FKYS R GT S L + Sbjct: 308 RRIIPDCGLSTDIFSGYHSETEEDHQESLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N VG+ EV++E K + +L GR+ + Sbjct: 368 VPEEVKIRRLNEIIELQNRLSAES---NARDVGKTFEVMVEGVSKRSREQLFGRTQQNKV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + NH IGD + VRIT+ +TL GE V Sbjct: 425 VVFDRGNHRIGDFVHVRITEASSATLKGEEV 455 >gi|283458476|ref|YP_003363102.1| 2-methylthioadenine synthetase [Rothia mucilaginosa DY-18] gi|283134517|dbj|BAI65282.1| 2-methylthioadenine synthetase [Rothia mucilaginosa DY-18] Length = 504 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 160/449 (35%), Positives = 263/449 (58%), Gaps = 30/449 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ + V+++GCQMNV+DS RM + + GY R DL+V NTC +RE A+ ++Y Sbjct: 16 PRTYEVRTFGCQMNVHDSERMSGLLEANGYVRAEEGTQPDLVVFNTCAVRENASNRLYGN 75 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG++ +K R +G + + V GC+AQ + + I+ ++P V+VV G LP LLERA Sbjct: 76 LGQLAPVK--RAHKG--MQIAVGGCLAQKDQDAIIEKAPWVDVVFGTHNIGALPTLLERA 131 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201 R + + E L + KR + +++I GC+ CTFC+VP RG Sbjct: 132 RHNHE------AQAELLESLEVFPSTLPTKRDHVYSGWVSISVGCNNTCTFCIVPSLRGK 185 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 E R ++ E + L+D+G E+TLLGQNVN++ G++ G++ FS LL + EI+GL Sbjct: 186 EKDRRPGDILAEVQALVDDGAIEVTLLGQNVNSY---GVEFGDRQAFSKLLRACGEIEGL 242 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP +D +I A + +MP LH+P+QSGSD++LK M R + + ++ I++ Sbjct: 243 ERVRFTSPHPAMFTDDVIDAMAETPNVMPVLHMPLQSGSDKVLKDMRRSYRSKKFLNILE 302 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R P+ I++D IVGFPGET++DF+ T+ +V++ ++ AF+F+YS R GTP + M Sbjct: 303 KVRERIPNAVITTDIIVGFPGETEEDFQDTLKVVEQARFSSAFTFQYSIRPGTPAATMEN 362 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSP 433 Q+ + V + ERL+ LQ ++ ++ N +G+ +E+++ K +L GR P Sbjct: 363 QIPKEVVQERYERLIALQDRIAGEE---NRKQLGKTVELMVVAEAGRKAEQTHRLSGRGP 419 Query: 434 WLQ----SVVLNSKNHNIGDIIKVRITDV 458 + SV + GD++ V IT+ Sbjct: 420 DQRLVHFSVPEGCETPRPGDMVTVPITEA 448 >gi|81760370|sp|Q8NP67|MIAB_CORGL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|21324719|dbj|BAB99342.1| 2-methylthioadenine synthetase [Corynebacterium glutamicum ATCC 13032] Length = 522 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 153/432 (35%), Positives = 250/432 (57%), Gaps = 25/432 (5%) Query: 14 VSQIVDQCIVPQR-------FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66 V+Q Q +P+ + VK+YGCQMNV+DS R+ + GY DL+V Sbjct: 6 VNQHPGQATLPETAEGQVRTYEVKTYGCQMNVHDSERLSGLLEEAGYVAAPEDTTPDLVV 65 Query: 67 LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126 NTC +RE A ++Y LG +R++K ++ + + V GC+AQ + + +++++P V+V Sbjct: 66 FNTCAVRENADMRLYGTLGNLRSVK----EKNPGMQIAVGGCLAQKDKDTVVKKAPWVDV 121 Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186 V G LP LL+RA + + + D E+ V R+ ++++ GC Sbjct: 122 VFGTHNIGSLPTLLQRAEHNAQA---EVEIVDSLEQFPSVLSA-KRESAYAGWVSVSVGC 177 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--- 243 + CTFC+VP RG E R ++ E + L+D GV E+TLLGQNVNA+ +D E Sbjct: 178 NNTCTFCIVPSLRGKEQDRRPGDILAEVQALVDQGVTEVTLLGQNVNAYGVNFVDPELER 237 Query: 244 -KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 + FS LL + EI+GL R+R+T+ HP + + +I A + + P LH+P+QSGSD++ Sbjct: 238 DRSAFSKLLRACGEIEGLERVRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDKV 297 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 LK M R + + ++ I+D +R+ P +I++D IVGFPGET++DF+AT+D+V K + A Sbjct: 298 LKEMRRSYRSKKFLSILDEVRAKIPHASITTDIIVGFPGETEEDFQATLDVVKKARFTSA 357 Query: 363 FSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ++F+YSPR GTP + Q+ + V + ERL+ +Q+++ E++ N +G +E+L++ Sbjct: 358 YTFQYSPRPGTPAAEYENQLPKEVVQERYERLMVVQEQVCEEE---NQKLIGTTVELLVQ 414 Query: 420 KHGKEKGKLVGR 431 G K R Sbjct: 415 AGGGRKNDATKR 426 >gi|19553154|ref|NP_601156.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Corynebacterium glutamicum ATCC 13032] gi|62390789|ref|YP_226191.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Corynebacterium glutamicum ATCC 13032] gi|41326127|emb|CAF20290.1| TRNA METHYLTHIOTRANSFERASE [Corynebacterium glutamicum ATCC 13032] Length = 526 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 153/432 (35%), Positives = 250/432 (57%), Gaps = 25/432 (5%) Query: 14 VSQIVDQCIVPQR-------FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66 V+Q Q +P+ + VK+YGCQMNV+DS R+ + GY DL+V Sbjct: 10 VNQHPGQATLPETAEGQVRTYEVKTYGCQMNVHDSERLSGLLEEAGYVAAPEDTTPDLVV 69 Query: 67 LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126 NTC +RE A ++Y LG +R++K ++ + + V GC+AQ + + +++++P V+V Sbjct: 70 FNTCAVRENADMRLYGTLGNLRSVK----EKNPGMQIAVGGCLAQKDKDTVVKKAPWVDV 125 Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186 V G LP LL+RA + + + D E+ V R+ ++++ GC Sbjct: 126 VFGTHNIGSLPTLLQRAEHNAQA---EVEIVDSLEQFPSVLSA-KRESAYAGWVSVSVGC 181 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--- 243 + CTFC+VP RG E R ++ E + L+D GV E+TLLGQNVNA+ +D E Sbjct: 182 NNTCTFCIVPSLRGKEQDRRPGDILAEVQALVDQGVTEVTLLGQNVNAYGVNFVDPELER 241 Query: 244 -KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 + FS LL + EI+GL R+R+T+ HP + + +I A + + P LH+P+QSGSD++ Sbjct: 242 DRSAFSKLLRACGEIEGLERVRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDKV 301 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 LK M R + + ++ I+D +R+ P +I++D IVGFPGET++DF+AT+D+V K + A Sbjct: 302 LKEMRRSYRSKKFLSILDEVRAKIPHASITTDIIVGFPGETEEDFQATLDVVKKARFTSA 361 Query: 363 FSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ++F+YSPR GTP + Q+ + V + ERL+ +Q+++ E++ N +G +E+L++ Sbjct: 362 YTFQYSPRPGTPAAEYENQLPKEVVQERYERLMVVQEQVCEEE---NQKLIGTTVELLVQ 418 Query: 420 KHGKEKGKLVGR 431 G K R Sbjct: 419 AGGGRKNDATKR 430 >gi|256820151|ref|YP_003141430.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Capnocytophaga ochracea DSM 7271] gi|256581734|gb|ACU92869.1| RNA modification enzyme, MiaB family [Capnocytophaga ochracea DSM 7271] Length = 482 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 172/459 (37%), Positives = 260/459 (56%), Gaps = 22/459 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + GY +++D+ADL+++NTC +REKA + + L Sbjct: 24 KKLYIESYGCQMNFSDSEIVASILSKAGYNTTDTVDEADLVLINTCSVREKAEQTIRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + K + + V V GC+A+ L IV++VVGP Y LP LLE Sbjct: 84 EQFNVYKRKKPA----MKVGVLGCMAERVKHAFLEEEKIVDMVVGPDAYKDLPNLLEEVE 139 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V+ S ++ + ++ + N GVTAF++I GCD CTFC+VP+TRG E S Sbjct: 140 EGREAVNVILSKDETYADIAPIRLNSN---GVTAFVSITRGCDNMCTFCIVPFTRGRERS 196 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251 R +++E L G E+TLLGQNV++ W G GL D K + F+ LL Sbjct: 197 RDPYSILNEIADLQARGFKEVTLLGQNVDSYLWYGGGLKKDFSKASEMQQATAINFAKLL 256 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++ + +R+R++TS+P+DM+ +I + Y+HLPVQSGS+RILK+MNR HT Sbjct: 257 DMVAIAQPEMRIRFSTSNPQDMTLDVIDTMAKHPNICKYIHLPVQSGSNRILKAMNRLHT 316 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY +ID IR P+ AIS D I GFP ET++D + T+ L++ + Y F F YS R Sbjct: 317 REEYFALIDSIRERIPECAISQDMIAGFPTETEEDHQDTLSLMEYVKYDFGFMFAYSERP 376 Query: 372 GTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429 GT + +E V E VK RL + ++ + A +G+ +EVLIE + K+ K + Sbjct: 377 GTLAARKIEDDVPEEVKKRRLAEIIDLQQKHSLYRTQAQIGKTVEVLIEGNSKKSDKEWM 436 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 GR+ VV +++ IGD + V+ITD +TL G+ V Sbjct: 437 GRNSQNTVVVFPKEDYKIGDFVMVKITDCTSTTLIGKAV 475 >gi|304383561|ref|ZP_07366021.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella marshii DSM 16973] gi|304335371|gb|EFM01641.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella marshii DSM 16973] Length = 441 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 164/449 (36%), Positives = 260/449 (57%), Gaps = 15/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GYE S+++AD + LNTC +RE A K+Y Sbjct: 2 KKLFIETYGCQMNVADSEVVASVMQMAGYEMCESIEEADAVFLNTCSVRENAENKIYH-- 59 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R+ L K+ +L V+ GC+A+ ++++ ++V GP +Y LP+L+ +A Sbjct: 60 -RLEALHAKSTKKHRVILGVL-GCMAERVRDDLIENHH-ADLVAGPDSYLNLPDLIAQAE 116 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + + G + ++ F++I GCD FC +C+VPYTRG E Sbjct: 117 LGQKAINIELSKTETYRDIVPQRIMGNH-----ISGFVSIMRGCDNFCHYCIVPYTRGRE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLV 261 SR + +V E L + G EITLLGQNVN++R + DG + F LL ++ + Sbjct: 172 RSRDIESIVKEVHDLQEKGFKEITLLGQNVNSYRFQPADGSSEIGFPQLLRHVARAFPKM 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R++T HP+DMSD + + L ++HLPVQSGS+++LK MNRR+TA YR + Sbjct: 232 RVRFSTPHPKDMSDETLHVIAEEPNLCNHIHLPVQSGSNKVLKLMNRRYTAEWYRDRVAA 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-E 380 +R + PD +S+D VG+ GE ++D R ++ L+++I Y AF FKYS R GT S L + Sbjct: 292 VRRIIPDCGLSTDIFVGYHGEEEEDHRQSLALMEEIVYDSAFMFKYSERPGTYASKHLPD 351 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 V E +K RL + N G++ EVL+E K + +L GR+ + VV Sbjct: 352 NVPEEIKLRRLAEMIDLQTRMSAVANKKDEGKMFEVLVENFSKRSRQQLCGRTQQNKMVV 411 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + NH+IG+ + VRIT +TL GE+V Sbjct: 412 FDKGNHHIGEFLNVRITGSTSATLLGEVV 440 >gi|238927480|ref|ZP_04659240.1| tRNA 2-methylthioadenine synthetase [Selenomonas flueggei ATCC 43531] gi|238884762|gb|EEQ48400.1| tRNA 2-methylthioadenine synthetase [Selenomonas flueggei ATCC 43531] Length = 437 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 168/445 (37%), Positives = 255/445 (57%), Gaps = 14/445 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ + YGCQMN+ D+ RME + GY R DAD+I++NTC +RE A +KVY +G Sbjct: 4 RYKILVYGCQMNIADAERMEGQLQAAGYVRTEETADADVILINTCCVRETAEDKVYGKIG 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144 I+ +K + L+ + GC+AQ EGE ++RR+P ++ V+G L ++ E A Sbjct: 64 EIKKVKERHPQ----LIFGITGCMAQKEGENLMRRAPHIDFVLGTGKVQELGRIVAEIAA 119 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 VVD E L I G ++A++ I GC+ +CT+C+VPY RG E S Sbjct: 120 KRTPVVDVALDARAVEEHLPIARSGT-----LSAWVPIMYGCNNYCTYCIVPYVRGRERS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +VV E R+ +G E+TLLGQNVN++ G D + F+DLL + ++G+ R+R Sbjct: 175 RMPEEVVAEVRRAAADGYREVTLLGQNVNSY---GKDHGQADFADLLRMVDAVEGIRRVR 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D+SD LI + + ++HLPVQ GS+RILK+MNR +T +YR+ R+R Sbjct: 232 FMTSHPKDISDKLIDTIKNGTHICEHIHLPVQYGSNRILKAMNRVYTVEQYRERARRVRE 291 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P ++++D IVGFPGET++DF T+D + ++ Y A++F YS R GTP + M QV + Sbjct: 292 ALPGASLTTDLIVGFPGETEEDFAETLDFLREMRYDAAYTFLYSKRSGTPAAAMAAQVPD 351 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443 VK RL L E + N+ EV++E K + GR+ + V+ Sbjct: 352 EVKHARLERLMAVQNEISRAINEGLRSAQAEVMVEGASKNDPAVWSGRTRTNKIVLFPHG 411 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 +GD ++V+IT + L GE+V Sbjct: 412 AERVGDFVQVKITQPQTWVLKGEVV 436 >gi|218886426|ref|YP_002435747.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757380|gb|ACL08279.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 478 Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 179/484 (36%), Positives = 261/484 (53%), Gaps = 56/484 (11%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + ++GCQMNV DS + ++G+ + A + ++NTC +R+K +KVYS LGR Sbjct: 6 FHILTFGCQMNVNDSDWLARALVARGFTEA-PLGKARVNIVNTCSVRDKPEQKVYSVLGR 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--AR 144 IR ++ D VV GCVAQ G R P V +V G P+ +ER A Sbjct: 65 IRQA----TRKLPDAFAVVGGCVAQQIGSGFFTRFPQVRLVFGGDGSSMAPQAIERLCAE 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G R+ D+S E+ ER + +D G +AF+ I +GCD FC +C+VPYTRG + S Sbjct: 121 PGLRLSLLDFS-EEYPERDAQLDAGPVPP---SAFVNIMQGCDNFCAYCIVPYTRGRQKS 176 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---------DGEKCTFSDLLYSLS 255 R+ VV E +L++ G EITLLGQNVN++ DG TF++LL+ ++ Sbjct: 177 RAADAVVRECAELVERGAKEITLLGQNVNSYGQDAEAARQATVAGDGNAVTFAELLHRVA 236 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + GL RLR+ T HP+D++ +I A G LD L P LHLP+QSGSDRILK+M R++ Y Sbjct: 237 ALPGLARLRFVTPHPKDIAPEVIDAFGTLDNLCPRLHLPMQSGSDRILKAMGRKYDMARY 296 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I+ R+++ RPDI +S+D IVGFPGET+ DF T+ + +G+A +FSF YS R GT Sbjct: 297 MDIVHRLKAARPDIQLSTDIIVGFPGETEQDFEDTLSAMRAVGFAASFSFCYSDRPGTRA 356 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIEKHGKEKGKLV-- 429 + ++D KA RL +L+E Q + + C VG VL++ ++ G Sbjct: 357 EMLPGKLDAAEKAARL----ARLQEWQNDYTEQCLRNMVGLHTMVLLDGMSRKPGMATPE 412 Query: 430 -------------------GRSPWLQS--VVLNSKNHN-----IGDIIKVRITDVKISTL 463 GR P+ Q+ VV+ + +G I+ V I + K +L Sbjct: 413 SHEGVHDGATGTPGGESWQGRDPYGQAVNVVMPPRTEGGPEGWLGRIVPVTIVEAKKHSL 472 Query: 464 YGEL 467 G L Sbjct: 473 RGVL 476 >gi|225572114|ref|ZP_03780978.1| hypothetical protein RUMHYD_00408 [Blautia hydrogenotrophica DSM 10507] gi|225040448|gb|EEG50694.1| hypothetical protein RUMHYD_00408 [Blautia hydrogenotrophica DSM 10507] Length = 488 Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 169/447 (37%), Positives = 255/447 (57%), Gaps = 18/447 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F V ++GCQMN DS ++ + GYE+ +S ++AD ++ NTC +RE A +VY LG Sbjct: 55 FCVNTFGCQMNARDSEKLVGILEQAGYEKSDS-EEADFVLYNTCTVRENANLRVYGRLGH 113 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + LK K+ + + + GC+ Q E+I + V+++ G Y+ PELL Sbjct: 114 LNRLK----KKNPHMRIALCGCMMQEAHVVEKIKKSYSFVDLIFGTHNLYKFPELLANML 169 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 R++ + D+ D Y K GV GC+ FC++C+VPY RG E S Sbjct: 170 ASDRMIIDIWEGTDQIVEDLPTDRKYPFKSGVNIMF----GCNNFCSYCIVPYVRGRERS 225 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ E KL+ +GV E+ LLGQNVN++ GK LD E +F+ LL + +++GL R+R Sbjct: 226 REPKAIIREIEKLVADGVREVMLLGQNVNSY-GKTLD-EPVSFARLLEEVEQVEGLERIR 283 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D+SD LI+ + +LHLP+QSGS RILK MNRR+ Y +++++IR+ Sbjct: 284 FMTSHPKDLSDELIQVMAKSQKICRHLHLPLQSGSSRILKEMNRRYDQERYLELVEKIRA 343 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PDI++++D IVGFPGET+ DF T+ +VD++GY AF+F YS R GTP + M +QV + Sbjct: 344 AMPDISLTTDLIVGFPGETESDFEETLKVVDQVGYDTAFTFIYSKRSGTPAAAMEDQVPD 403 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVVLN 441 V ER L K ++E+ + +G EVL+E+ HG +G L GR V Sbjct: 404 EVVKERFDRLLKLVQERGRQESSRFLGTNQEVLVEEVSHHG--EGLLTGRMGQNLLVHFP 461 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + IG + VR+ K GE + Sbjct: 462 GEKELIGKTVTVRLEQCKGFYYIGEKI 488 >gi|145295854|ref|YP_001138675.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Corynebacterium glutamicum R] gi|229890500|sp|A4QEV7|MIAB_CORGB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|140845774|dbj|BAF54773.1| hypothetical protein [Corynebacterium glutamicum R] Length = 526 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 156/434 (35%), Positives = 255/434 (58%), Gaps = 29/434 (6%) Query: 14 VSQIVDQCIVPQR-------FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA--DL 64 V+Q Q +P+ + VK+YGCQMNV+DS R+ + GY V + +DA DL Sbjct: 10 VNQHPGQATLPETAEGQVRTYEVKTYGCQMNVHDSERLSGLLEEAGY--VAAPEDATPDL 67 Query: 65 IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124 +V NTC +RE A ++Y LG +R++K ++ + + V GC+AQ + + +++++P V Sbjct: 68 VVFNTCAVRENADMRLYGTLGNLRSVK----EKNPGMQIAVGGCLAQKDKDTVVKKAPWV 123 Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184 +VV G LP LL+RA + + + D E+ V R+ ++++ Sbjct: 124 DVVFGTHNIGSLPTLLQRAEHNAQA---EVEIVDSLEQFPSVLPA-KRESAYAGWVSVSV 179 Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE- 243 GC+ CTFC+VP RG E R ++ E + L+D GV E+TLLGQNVNA+ +D E Sbjct: 180 GCNNTCTFCIVPSLRGKEQDRRPGDILAEVQALVDQGVTEVTLLGQNVNAYGVNFVDPEL 239 Query: 244 ---KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300 + FS LL + EI+GL R+R+T+ HP + + +I A + + P LH+P+QSGSD Sbjct: 240 ERDRSAFSKLLRACGEIEGLERVRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSD 299 Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 ++LK M R + + ++ I+D +R+ P +I++D IVGFPGET++DF+AT+D+V K + Sbjct: 300 KVLKEMRRSYRSKKFLSILDEVRAKIPHASITTDIIVGFPGETEEDFQATLDVVKKARFT 359 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVL 417 A++F+YSPR GTP + Q+ + V + ERL+ +Q+++ E++ N +G +E+L Sbjct: 360 SAYTFQYSPRPGTPAAEYENQLPKEVVQERYERLMVVQEQVCEEE---NQKLIGTTVELL 416 Query: 418 IEKHGKEKGKLVGR 431 ++ G K R Sbjct: 417 VQAGGGRKNDATKR 430 >gi|256844844|ref|ZP_05550302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_36A2] gi|294785875|ref|ZP_06751163.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_27] gi|256718403|gb|EEU31958.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_36A2] gi|294487589|gb|EFG34951.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_27] Length = 435 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 158/441 (35%), Positives = 262/441 (59%), Gaps = 16/441 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV +S +++ +F + GY+ +D+AD + LNTC +RE AA +++ LG ++ L Sbjct: 8 TYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKLGELKAL 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K R ++ V GC AQ +GEE++++ PI+++V+G Q R+P+ +E+ + Sbjct: 68 KEKR-----GTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIENNESTH 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + ED+ + G ++ TA ++I GC+ FCTFC+VPY RG E S L ++ Sbjct: 123 EVYTDNEDELPPRLDAEFGSDQ----TASISITYGCNNFCTFCIVPYVRGRERSVPLEEI 178 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V + + + G EI LLGQNVN++ +G+ F+ LL + +++G +R+ + HP Sbjct: 179 VKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVRFVSPHP 236 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 RD +D +I D + LHLP+QSGS +IL+ M R +T +Y ++D+I+S P +A Sbjct: 237 RDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKSKIPGVA 296 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 +++D IVGFPGET++DF T+D+V K+ + ++ F YS R GT + M Q++E VK ER Sbjct: 297 LTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIEEAVKKER 356 Query: 391 LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI- 447 L L + + + SF ++ +I++VL+E K+ +++ VVL N + Sbjct: 357 LQRLME--VQNKCSFEESSKYKDRIVKVLVEGSSKKNKEVLSGRTSTNKVVLFKGNLGLK 414 Query: 448 GDIIKVRITDVKISTLYGELV 468 G + V+I + K TLYGE+V Sbjct: 415 GQFVNVKINECKTWTLYGEIV 435 >gi|289758861|ref|ZP_06518239.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289714425|gb|EFD78437.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] Length = 423 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 151/377 (40%), Positives = 228/377 (60%), Gaps = 20/377 (5%) Query: 23 VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P R + V++YGCQMNV+DS R+ + + GY R +AD++V NTC +RE A ++Y Sbjct: 55 APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 114 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L + R + D+ + V GC+AQ + + +LRR+P V+VV G LP LLE Sbjct: 115 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 170 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 RAR K V+ +++ L +R+ A+++I GC+ CTFC+VP RG Sbjct: 171 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 225 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256 E+ RS + ++ E R L+++GV E+TLLGQNVNA+ L + F++LL + + Sbjct: 226 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 285 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I GL R+R+T+ HP + +D +I+A + P LH+P+QSGSDRIL++M R + A Y Sbjct: 286 IDGLERVRFTSPHPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYL 345 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 II+R+R+ P AI++D IVGFPGET++DF AT+D+V + +A AF+F+YS R GTP + Sbjct: 346 GIIERVRAAIPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAA 405 Query: 377 NMLEQVDENVKAERLLC 393 + + AE LC Sbjct: 406 QL-----DGTAAESRLC 417 >gi|319441566|ref|ZP_07990722.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Corynebacterium variabile DSM 44702] Length = 529 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 154/422 (36%), Positives = 249/422 (59%), Gaps = 23/422 (5%) Query: 23 VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P R + V+++GCQMNV+DS R+ + Y V D D+IV NTC +RE A ++Y Sbjct: 20 TPARTYEVRTFGCQMNVHDSERLSGLLEDSDYVPVGEGDTPDVIVFNTCAVRENADNRLY 79 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 LG+++ +K+S + + V GC+AQ + + ++ R+P V+VV G LP LL Sbjct: 80 GTLGQLKKVKDSHPG----MQIAVGGCMAQKDKDTVVSRAPWVDVVFGTHNMGSLPTLLS 135 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R+ R + + D E+ V R+ ++++ GC+ CTFC+VP RG Sbjct: 136 RSAHNSRA---EVEIVDALEQFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGK 191 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEI 257 E R ++ E + L+D GV E+TLLGQNVNA+ L+ ++ FS LL + EI Sbjct: 192 EQDRRPGDILAEVKALVDQGVTEVTLLGQNVNAYGVHFSDPSLERDRSAFSKLLRACGEI 251 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +GL RLR+T+ HP + +D +I A + V+ P LH+P+QSGSD++LK M R + + ++ Sbjct: 252 EGLERLRFTSPHPAEFTDDVIDAMAETPVVCPQLHMPLQSGSDKVLKDMRRSYRSTKFLG 311 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 I+D++R PD AI++D IVGFPGET++DF+ T+ +V++ + A++F+YSPR GTP + Sbjct: 312 ILDKVRDRLPDAAITTDIIVGFPGETEEDFQETLRVVEESRFTSAYTFQYSPRPGTPAAE 371 Query: 378 MLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVG 430 + QV + V + ERL LQ+++ ++ N +G +E+L++ G K ++ G Sbjct: 372 LDNQVPKAVVQDRYERLEELQERISGEE---NAKQIGCTVELLVQAGGGRKNDRTRRMTG 428 Query: 431 RS 432 R+ Sbjct: 429 RA 430 >gi|257439844|ref|ZP_05615599.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium prausnitzii A2-165] gi|257197753|gb|EEU96037.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium prausnitzii A2-165] Length = 460 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 179/449 (39%), Positives = 256/449 (57%), Gaps = 16/449 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P FV SYGCQ NV D R++ + GY + +DADLI+ NTC +RE A ++V+ Sbjct: 22 TPPLAFVHSYGCQQNVNDGERIKGVLVDIGYGLCDKPEDADLILFNTCAVREHAEQRVFG 81 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVA-QAEGEEILRRS-PIVNVVVGPQTYYRLPELL 140 +G ++ LK K G L++ + GC+A Q E LR+S P V++V G LP+L+ Sbjct: 82 NVGALKGLKEK--KRG--LMIGLCGCMANQKHVVEKLRKSYPYVDLVFGVDGIDTLPQLI 137 Query: 141 -ERARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++ + KRV+ + +R IV+ R+ A+L I GCD FCT+C+VPY Sbjct: 138 AQKLQKHKRVL------MEPAQRPVIVENIPIRRESEFRAWLPIMYGCDNFCTYCIVPYV 191 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG E SR ++ E R L++ G EITLLGQNVN++ GKGL+ E+ F+DLL L + Sbjct: 192 RGREKSRKPGDILAEFRGLVEAGYKEITLLGQNVNSY-GKGLE-EQVDFADLLNLLCAVP 249 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G ++R+ TSHP+D S LI L +LHLPVQ GSD +LK MNR +T +Y ++ Sbjct: 250 GDYQIRFMTSHPKDASHKLIDTIAAQPHLCKHLHLPVQCGSDELLKKMNRHYTIGQYMEL 309 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I+ R P I SSD IVGFPGET++DF+ T++LV K+GY Q F+F YS R GT + M Sbjct: 310 IEYARKKVPGITFSSDIIVGFPGETEEDFQDTLELVKKVGYMQLFTFIYSKRTGTKAAEM 369 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 + K +R+ L K E + VGQ + VL+E +G+ G L GR +V Sbjct: 370 PDPTPRAEKTDRMTRLLKVQDEIAMDLVRQQVGQTVRVLVEGYGRSDGTLSGRLDNNLTV 429 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467 + +G +V +T + + L GEL Sbjct: 430 EFAADPALMGSYAQVHLTGARATVLLGEL 458 >gi|168702635|ref|ZP_02734912.1| probable MiaB protein-putative tRNA-thiotransferase [Gemmata obscuriglobus UQM 2246] Length = 492 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 175/465 (37%), Positives = 268/465 (57%), Gaps = 30/465 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ ++++ GCQMNV DS + +GY+ + AD+++ NTC +RE A +K YS L Sbjct: 3 QKVYIETVGCQMNVLDSELVIGALRKRGYDLTDDPAAADVLLFNTCSVREHAEDKTYSAL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K R K G ++ V GC+AQ + + I +R+P V++VVG +P+L+++ R Sbjct: 63 GRVRLVK--RDKPGA--VIGVLGCMAQKDQDAIRKRAPYVDMVVGTGQLGAVPDLVDKVR 118 Query: 145 FGK---------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 + R VE F R A++ IQ GCDKFCT+CVV Sbjct: 119 ATREPQLAVSLGRADGGRNEVEASFVSYDPARDPSMRPTPFQAYVRIQIGCDKFCTYCVV 178 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 P TRG E SR + +E R+L+D G E+TLLGQ VN++ + D + SDL+ + Sbjct: 179 PSTRGPEQSRPPEHIWNEVRQLVDQGCKEVTLLGQTVNSYVYESGD-TRTRLSDLIAGMH 237 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 ++ GL R+++ T++P+DM+D L+ A DL ++ YLH+PVQSG D +LK M R +TA Y Sbjct: 238 DVAGLERIKFVTNYPKDMTDDLLDAVRDLPKVVKYLHVPVQSGCDEVLKRMKRSYTAAYY 297 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 +++ R R + P +++SSDFIVGF GET++ F+ +M+LV + + +F FKYS R GT Sbjct: 298 MEMLARCRELVPGVSVSSDFIVGFCGETEESFQKSMELVREARFKNSFIFKYSERGGTKA 357 Query: 376 SNML-EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLI------EKHGKEK 425 + + V E VK R LL +Q E + A VG+++EVL+ E+ +E+ Sbjct: 358 AERYPDDVPEEVKKRRNNDLLAVQN---ENSRLDHRAQVGRVVEVLVEGPSRREQSNRER 414 Query: 426 G---KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 G +L GRS VV + IG+ +KV +TD TLYG++ Sbjct: 415 GATMQLTGRSMADHIVVFDGTERLIGETVKVTVTDASPFTLYGDV 459 >gi|91216870|ref|ZP_01253834.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychroflexus torquis ATCC 700755] gi|91185031|gb|EAS71410.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Psychroflexus torquis ATCC 700755] Length = 485 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 172/457 (37%), Positives = 259/457 (56%), Gaps = 22/457 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++SYGC MN DS + + +GY N + +ADL+++NTC IR+KA + V L + Sbjct: 26 LYIESYGCAMNFSDSEIVASILNKEGYNTTNELSEADLVLVNTCSIRDKAEQTVRKRLEK 85 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +K K + V V GC+A+ + L IV++VVGP Y LP LLE G Sbjct: 86 YNAVK----KINPSMKVGVLGCMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLLEEVESG 141 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + ++ S E+ + +S V N GV+AF++I GCD CTFC+VP+TRG E SR Sbjct: 142 RDAINVILSKEETYGDISPVRLQSN---GVSAFVSITRGCDNMCTFCIVPFTRGRERSRD 198 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEKCT---FSDLLYS 253 ++DE L G EITLLGQNV++ W G GL + +K T FS LL Sbjct: 199 PLSIIDEVNDLWSKGFKEITLLGQNVDSYLWYGGGLKKDFKSATEMQKATAVGFSHLLDI 258 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 +++ + +R+R++TS+P+DM+ +I+ + + Y+HLPVQSGSDRILK MNR HT Sbjct: 259 VAKAQPGMRIRFSTSNPQDMTIDVIEVMAKHNNICDYIHLPVQSGSDRILKKMNRLHTRE 318 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 EY ++ID IR + P IS D I+GFP ET++D + T+ L++ + Y + F YS R GT Sbjct: 319 EYFRLIDNIRKIIPGCGISQDMIIGFPSETEEDHKDTLSLMENVKYNFGYMFAYSERPGT 378 Query: 374 PGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGR 431 G+ E + E K +RL + ++ + +G+I EVL+EK K+ + GR Sbjct: 379 LGAKKFEDDIPEATKKKRLQEIIDVQQKHSRFRTEQHLGKIEEVLVEKESKKSDSQWSGR 438 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +VV K++ +GD + V++ +TL GE V Sbjct: 439 NTQNTTVVFPKKDYKLGDYVLVKMEKCTSATLIGEPV 475 >gi|237741509|ref|ZP_04571990.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 4_1_13] gi|229429157|gb|EEO39369.1| tRNA 2-methylthioadenosine synthase [Fusobacterium sp. 4_1_13] Length = 435 Score = 289 bits (739), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 158/441 (35%), Positives = 262/441 (59%), Gaps = 16/441 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV +S +++ +F + GY+ +D+AD + LNTC +RE AA +++ LG ++ L Sbjct: 8 TYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKLGELKAL 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K R ++ V GC AQ +GEE++++ PI+++V+G Q R+P+ +E+ + Sbjct: 68 KEKR-----GTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIENNESTH 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + ED+ + G ++ TA ++I GC+ FCTFC+VPY RG E S L ++ Sbjct: 123 EVYTDNEDELPPRLDAEFGSDQ----TASISITYGCNNFCTFCIVPYVRGRERSVPLEEI 178 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V + + + G EI LLGQNVN++ +G+ F+ LL + +++G +R+ + HP Sbjct: 179 VKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVRFVSPHP 236 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 RD +D +I D + LHLP+QSGS +IL+ M R +T +Y ++D+I+S P +A Sbjct: 237 RDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKSKIPGVA 296 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 +++D IVGFPGET++DF T+D+V K+ + ++ F YS R GT + M Q++E VK ER Sbjct: 297 LTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIEEAVKKER 356 Query: 391 LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI- 447 L L + + + SF ++ +I++VL+E K+ +++ VVL N + Sbjct: 357 LQRLME--VQNKCSFEESSKYKDRIVKVLVEGPSKKNKEVLSGRTSTNKVVLFKGNLGLK 414 Query: 448 GDIIKVRITDVKISTLYGELV 468 G + V+I + K TLYGE+V Sbjct: 415 GQFVNVKINECKTWTLYGEIV 435 >gi|269956048|ref|YP_003325837.1| RNA modification enzyme, MiaB family [Xylanimonas cellulosilytica DSM 15894] gi|269304729|gb|ACZ30279.1| RNA modification enzyme, MiaB family [Xylanimonas cellulosilytica DSM 15894] Length = 543 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 165/421 (39%), Positives = 258/421 (61%), Gaps = 30/421 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV----LNTCHIREKAAEKVYS 82 + V++ GCQMNV+DS M M GY R + DDA +NTC +RE AA ++Y Sbjct: 23 YVVRTLGCQMNVHDSEHMAGMLEQAGYVRASQADDAANAADVVVINTCAVRENAATRLYG 82 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LG++ ++K +R + + V GC+AQ + EI+ ++P V+VV G LP LLER Sbjct: 83 NLGQLASIKAARP----GMQIAVGGCLAQKDRGEIVAKAPYVDVVFGTHNLDALPVLLER 138 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTA-FLTIQEGCDKFCTFCVVPYTRG 200 AR + V+ S++ L R+ V A +++I GC+ CTFC+VP+ RG Sbjct: 139 ARHNEAAQVEIAESLQVFPSTLP------TRRESVYAGWVSISVGCNNTCTFCIVPHLRG 192 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259 E R +++ E + L+D G E+TLLGQNVN++ G++ G++ F+ LL + +I G Sbjct: 193 KERDRRPGEILAEVQALVDAGAVEVTLLGQNVNSY---GVEFGDRGAFAKLLRACGQIAG 249 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+T+ HP +D +I A +MP LH+P+QSGSDR+L++M R + + ++ I+ Sbjct: 250 LERVRFTSPHPAAFTDDVIDAMAQTPNVMPSLHMPLQSGSDRVLRAMRRSYRSEKFLGIL 309 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 DR+R+ PD AI++D IVGFPGET++DF T+ +V+ +A AF+F+YSPR GTP + M Sbjct: 310 DRVRAAMPDAAITTDLIVGFPGETEEDFAETLRVVEASRFASAFTFQYSPRPGTPAATMD 369 Query: 380 EQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRS 432 Q+ + V + ERLL LQ+++ ++ + A VG+ +E+L+ E GK+ G +L GR+ Sbjct: 370 GQLPKEVVQERFERLLALQERISTEESA---AQVGRTVELLVTEGRGKKDGATHRLSGRA 426 Query: 433 P 433 P Sbjct: 427 P 427 >gi|302335738|ref|YP_003800945.1| RNA modification enzyme, MiaB family [Olsenella uli DSM 7084] gi|301319578|gb|ADK68065.1| RNA modification enzyme, MiaB family [Olsenella uli DSM 7084] Length = 455 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 177/458 (38%), Positives = 267/458 (58%), Gaps = 24/458 (5%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +V + +FV+++GCQMN++DS R+ + G V D+AD++V TC +REKA ++ Sbjct: 7 LVGKTYFVRTFGCQMNLHDSERVAGLLDDCGCVAVQGPDEADIVVFMTCSVREKADTHLF 66 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140 G NL G +V V GC+AQ +G+ + P V+VV G +P LL Sbjct: 67 ---GEASNLVRLPRPPSGRRVVAVGGCIAQRDGDRLREHIPNVDVVFGTSALASVPALLV 123 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 E G V D S E + + +R++ A++ I GCD FCT+C+VP+ RG Sbjct: 124 EALEEGGGRVHVDTSEEGRGFSAELPS---HREQDFHAWVPIMTGCDNFCTYCIVPHVRG 180 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR+ +VVDE +L+ +GV EITLLGQNVN++ G+ L GE F++LL ++ E G+ Sbjct: 181 RERSRAFERVVDECARLVADGVREITLLGQNVNSY-GRDLYGEP-RFAELLQAVGE-TGV 237 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+S+P+D+S I A +MP+LHL VQSGS RILK+MNR +T Y +I Sbjct: 238 ERIRFTSSNPKDLSAETIAAMAGTPNVMPHLHLAVQSGSTRILKAMNRSYTREGYLDVIR 297 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 I++ P IA+S+D IVGFPGET++DF T+ LV+++G+A A++F YS R GTP + + + Sbjct: 298 DIKAAIPGIALSTDIIVGFPGETEEDFLDTLSLVEEVGFASAYTFIYSRRPGTPAARITD 357 Query: 381 QVDENV---KAERLLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWL 435 V + +RL L ++L E V + G +E LIE K+ + LVG SP Sbjct: 358 DTPREVIQGRFDRLASLVERLAHEANVPYQ----GSRVEALIEGASKKDDRVLVGHSPHN 413 Query: 436 QSVVLNSKNHN-----IGDIIKVRITDVKISTLYGELV 468 Q+V+L+ + +G + V +T+ + L GEL Sbjct: 414 QTVLLDLPEGSHAGDFVGTLCDVHVTEARTWYLRGELA 451 >gi|288801850|ref|ZP_06407292.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella melaninogenica D18] gi|302346093|ref|YP_003814446.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella melaninogenica ATCC 25845] gi|288335892|gb|EFC74325.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella melaninogenica D18] gi|302149644|gb|ADK95906.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella melaninogenica ATCC 25845] Length = 442 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 159/450 (35%), Positives = 273/450 (60%), Gaps = 15/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GY+ + D+AD I LNTC +RE A K+Y+ L Sbjct: 2 KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEDEADAIFLNTCSVRENAENKIYNRL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ K+G DL++ V GC+A+ +++++ N+V GP +Y LP+++ + Sbjct: 62 EAL----HAEQKKGRDLILGVLGCMAERVRDDLIQNHH-ANLVCGPDSYLNLPDMIAQCE 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G +D + S + + + G NR V+ F++I GC+ FC +C+VP+TRG E S Sbjct: 117 NGTNALDIELSTTETYRDVIPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260 R + ++ E + L D G E+TLLGQNVN++ G +G++ +F++LL+ +++ Sbjct: 174 RDVESILKEVKDLHDKGFKEVTLLGQNVNSY-GLLPNGKRPENGVSFAELLHKVAQSVPD 232 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R+R+TTS+P DM++ +I+A L ++H P QSGS+ +LK MNR++T +Y + + Sbjct: 233 MRVRFTTSNPEDMTEDIIEAVATEPNLCNHIHFPAQSGSNSVLKVMNRKYTREDYLEKVA 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379 IR + PD +++D +G+ E+++DF+ T+ L+ ++G+ AF FKYS R GT + L Sbjct: 293 AIRRLVPDCGLTTDIFIGYHNESEEDFQQTLSLMREVGFDSAFMFKYSERPGTYAAKHLP 352 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 + V E K RL L + E N G+ ++LIE+ GK + +L+GR+P ++V Sbjct: 353 DNVSEEEKIRRLNELIRLQTEISAEQNKKDEGKEFDILIERFGKRSREQLMGRTPQNKAV 412 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V+ NH+IG+ ++VRIT +TL+GE V Sbjct: 413 VMPRGNHHIGETVRVRITGSTSATLFGEEV 442 >gi|284044702|ref|YP_003395042.1| RNA modification enzyme, MiaB family [Conexibacter woesei DSM 14684] gi|283948923|gb|ADB51667.1| RNA modification enzyme, MiaB family [Conexibacter woesei DSM 14684] Length = 443 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 167/451 (37%), Positives = 251/451 (55%), Gaps = 28/451 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R+ V ++GCQMN +DS RM+ M S GY D ADLI+ NTC IRE A + + L Sbjct: 2 KRYHVTTFGCQMNEHDSERMKGMLESLGYREAPDADVADLILFNTCSIREAADSRFKAHL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G + K R ++++ V GC AQ+ +E+ + P V+V GP ++L E L Sbjct: 62 GHAKRRKRER----PEVVIGVGGCWAQSVKDEVFEQFPFVDVAFGPGQVHKLAEFL---- 113 Query: 145 FGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + FE D R R + I GC+ C++C+VP TRG ++ Sbjct: 114 -----TSESLTAQGYFEFEGFTGDLPEKRAREFQGWTQISVGCNMACSYCIVPSTRGRDV 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---KCTFSDLLYSLSEIKGL 260 R L +V + ++ GV E+TLLGQNVNA+ G+ L TF+DLL ++ I G+ Sbjct: 169 GRPLGVLVADVERMASEGVTEVTLLGQNVNAY-GRDLHRRGFPSATFADLLSAVDAIDGI 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+RYT+ HP+DM + +I+AH +L+ L ++HLP+QSGS R+LK+M R ++ Y + Sbjct: 228 RRIRYTSPHPQDMKEDVIRAHAELEALCEHVHLPLQSGSSRVLKAMRRTYSRERYLDRVA 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R PD+AI++D IVGFPGETD+DF T+ L +++ Y AF+F YSPR T + + + Sbjct: 288 LLREHVPDVAITTDIIVGFPGETDEDFAQTLSLCEEVAYDGAFTFVYSPRRETEAATLPD 347 Query: 381 QVDENVKAERL----LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWL 435 QV VK ER+ +Q++ +E+ F VG+ +EVL+E + + +L GRS Sbjct: 348 QVPHEVKVERMDRLVEVIQRRAKERAQRF----VGRTVEVLVEGPSRTDPTRLRGRSRH- 402 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 VV S GD + V + TL GE Sbjct: 403 NKVVNFSGLAQPGDYVHVDVESATSQTLMGE 433 >gi|33861861|ref|NP_893422.1| 2-methylthioadenine synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|81575722|sp|Q7V0F7|MIAB_PROMP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|33640229|emb|CAE19764.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 464 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 171/453 (37%), Positives = 263/453 (58%), Gaps = 23/453 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM GY R ADL++ NTC IR+ A +KVYSFLG+ Sbjct: 21 YWITTFGCQMNKADSERMAGTLEKMGYSRAIDELKADLVLYNTCTIRDSAQQKVYSFLGK 80 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 K+S K L +VVAGC+AQ EGE +LRR P +++++GPQ L LLER G Sbjct: 81 QVKRKHSTPK----LKLVVAGCLAQQEGESLLRRVPELDLIMGPQHVNNLENLLERVDLG 136 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +VV T E+ F I + R + ++ I GC++ C++CVVP RG E SR Sbjct: 137 NQVVAT----EETFISEDITNP--RRDSSICGWVNIIYGCNERCSYCVVPSVRGKEQSRY 190 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260 + E L N E+TLLGQN++A+ G+ L G ++ + +DLLY + +++G+ Sbjct: 191 PDAIKSEIESLAHNNFKEVTLLGQNIDAY-GRDLPGTTKEGRKENSLTDLLYFIHDVEGI 249 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R++TSHP+ S LI A +LD + + H+P QSG++ IL+ M R +T +Y++II+ Sbjct: 250 KRIRFSTSHPKYFSKRLINACYELDKVCEHFHIPFQSGNNEILRLMARGYTIEKYKRIIE 309 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR + P+ +I++D IV FPGET+ +R T+ L+ IG+ Q + YSPR TP + Sbjct: 310 NIRQLMPNASITADAIVAFPGETETQYRETLKLISDIGFDQVMTAAYSPRPNTPAAFWDN 369 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQ-SV 438 Q+ E VK ERL + + + N + I VLIE + K +++GR+ + + Sbjct: 370 QIPEEVKKERLKEINELVETTSRKRNQRYLNNIESVLIEGLNPKNNAQMMGRTRTNRLTF 429 Query: 439 VLNSK----NHNIGDIIKVRITDVKISTLYGEL 467 V SK N++ GD I V+IT+ + +L G++ Sbjct: 430 VEISKNIEFNYSYGDEINVKITEARSFSLSGQI 462 >gi|254424981|ref|ZP_05038699.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. PCC 7335] gi|196192470|gb|EDX87434.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. PCC 7335] Length = 453 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 167/454 (36%), Positives = 270/454 (59%), Gaps = 23/454 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R+ V ++GCQMN DS RM + G AD+++ NTC IR+ A +KVYS+L Sbjct: 5 RRYHVTTFGCQMNKADSERMAGILEKMGMRWEEDPLQADVVLYNTCTIRDSAEQKVYSYL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G+ + R ++ +L +VVAGCVAQ EGE++LRR P ++VV+GPQ +L LL +A Sbjct: 65 GK----QAKRKRKDPNLTIVVAGCVAQQEGEQLLRRVPELDVVMGPQYANQLESLLAQAA 120 Query: 145 FGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +VV TD + +ED + R+ V+A++ + GC++ CT+CVVP RG+E Sbjct: 121 QGSQVVATDPVHIMEDITKP--------RRESEVSAWVNVIYGCNERCTYCVVPGVRGLE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSE 256 SR+ + E L D G E+TLLGQN++A+ G+ L G + T +DLL+ + + Sbjct: 173 QSRTKEAIRAEMAALGDQGYAEVTLLGQNIDAY-GRDLPGITSEGRRENTLTDLLHYVHD 231 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + G+ R+R+ TSHPR ++ L++A +L + + H+P QSG++++LK+M R +T +Y+ Sbjct: 232 VPGIERIRFATSHPRYFTERLVRACAELPKVCEHFHIPFQSGNNQVLKAMGRGYTREKYQ 291 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +II+ +R PD +IS+D IV FPGET+ F+ T+ L+++I + + YSPR GTP + Sbjct: 292 RIIETVRRYVPDASISADVIVAFPGETEAQFQDTLSLMEEIVFDMVNTAAYSPRPGTPAA 351 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWL 435 Q+DE VK +RL + + +Q + ++ VL+E + K+ +++GR+ Sbjct: 352 EWTNQLDEEVKQDRLQRINHLVSQQAEVRSQRYQNRVETVLVEAINPKDPNQVMGRTRGN 411 Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + N N G I+ V IT+ + +L GE V Sbjct: 412 RLTFFNGDINLLKGQIVPVAITETRAFSLTGERV 445 >gi|51892897|ref|YP_075588.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM 14863] gi|81388796|sp|Q67NJ9|MIAB_SYMTH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|51856586|dbj|BAD40744.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM 14863] Length = 470 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 174/454 (38%), Positives = 259/454 (57%), Gaps = 22/454 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++++GCQMN +DS M + GY + DDADL++ NTC +RE A E + +G Sbjct: 21 RVHIETFGCQMNEHDSEIMYGILAQMGYVKAQGPDDADLLLFNTCAVRESAVEHAFGRIG 80 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143 +++ LK + DL++ V GCV Q EG E I R P ++++ G +RLPEL+ERA Sbjct: 81 QLKPLKYT----NPDLIIGVCGCVPQVEGQVERIKRMFPYLDLIFGTHNIHRLPELVERA 136 Query: 144 RFGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VVD S+ D F + R+ + A++TI GCDK CT+C+VP TRG E Sbjct: 137 RSERETVVDVWESMGDDFPDILPA----AREGDLKAWVTIMYGCDKHCTYCIVPTTRGKE 192 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----FSDLLYSLS-EI 257 SR ++ E ++L G EITLLGQNVNA+ GK L G F DL+ + Sbjct: 193 RSRPYEVILAEVQELARQGFKEITLLGQNVNAY-GKDLYGRHGEGAFDFGDLIELIDRNS 251 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 G+ R+R+TT+HP+D + +++ + + + HLPVQSGSD +L+ M R + +Y + Sbjct: 252 PGIERIRFTTNHPKDFTRKMVEQIARAEKVCEWFHLPVQSGSDSVLRRMKRSYNRKQYLR 311 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++ IR + PD I++D IVGFPGET+++F+ T+ LV+++ Y AF F YS R GTP + Sbjct: 312 LVGWIRELIPDAVITTDIIVGFPGETEEEFQETLSLVEEVQYDAAFMFMYSERAGTPAAQ 371 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 M +++ K ERL L + + N+A VG++ ++L+E G +KGK W + Sbjct: 372 MEDRLSVPEKKERLQRLMEVQNRIARAKNEARVGKVYDILVE--GLDKGKPDVVFGWTRG 429 Query: 438 ---VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V G I+ VRIT TL GELV Sbjct: 430 NILVTFPGDESLRGRIVPVRITRAGTWTLEGELV 463 >gi|329947487|ref|ZP_08294689.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral taxon 170 str. F0386] gi|328524766|gb|EGF51821.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral taxon 170 str. F0386] Length = 553 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 154/412 (37%), Positives = 246/412 (59%), Gaps = 26/412 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------------DLIVLNTC 70 +P+ + V++ GCQMNV+DS M + GY RV + +A D++++NTC Sbjct: 17 LPRTYHVRTLGCQMNVHDSEHMAGLLEGAGYLRVEDVPEAAARATDAGDGGADVVIINTC 76 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130 +RE AA +++ LG++ +K R + + VAGC+AQ GE I+ R+P V+VV G Sbjct: 77 SVRENAATRLFGNLGQLAAVKRERPG----MQIAVAGCLAQQMGEGIVERAPWVDVVFGT 132 Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDK 188 LP LLERAR ++ +VE + E L + +R A+++I GC+ Sbjct: 133 HNLDVLPALLERARH-----NSAAAVELE-ESLKVFPSTLPTRRESSYAAWVSIAVGCNN 186 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248 CTFC+VP RG + R V+ E + G E+TLLGQNVN++ G G G++ F+ Sbjct: 187 TCTFCIVPSLRGKQRDRRPGDVLAEVEAVAAQGAIEVTLLGQNVNSY-GVGF-GDRGAFT 244 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 LL + ++G+ R+R+T+ HP +D +I+A + +MP LH+P+QSGSDR+L++M R Sbjct: 245 KLLRAAGSVEGIERVRFTSPHPAAFTDDVIEAMATTEAVMPSLHMPLQSGSDRVLRAMRR 304 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + + I+D++R V P+ AI++D IVGFPGET++DF+AT+D+V++ +A A++F+YS Sbjct: 305 SYRTQRFLGILDKVRGVMPEAAITTDIIVGFPGETEEDFQATLDVVERARFASAYTFEYS 364 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 PR GTP ++ +QV V ER L +R N+ G+++EVL+ + Sbjct: 365 PRPGTPAADRDDQVPAEVVKERYRRLDALVRRIAREENERQEGRVVEVLVAE 416 >gi|54025805|ref|YP_120047.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Nocardia farcinica IFM 10152] gi|81374170|sp|Q5YT08|MIAB_NOCFA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|54017313|dbj|BAD58683.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 503 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 153/413 (37%), Positives = 242/413 (58%), Gaps = 20/413 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + ++++GCQMNV+DS R+ + GY + ADL+V NTC +RE A K+Y LG Sbjct: 7 YEIRTFGCQMNVHDSERLSGLLEDAGYVKAAPGATADLVVFNTCAVRENADNKLYGTLGH 66 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + +K R + + V GC+AQ + + ++R++P V+VV G LP LLERAR Sbjct: 67 LAPVKAGRP----GMQIAVGGCLAQKDRDTVVRKAPWVDVVFGTHNIGSLPVLLERARHN 122 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ V+ S+E L R+ +++I GC+ CTFC+VP RG E+ R Sbjct: 123 EQAQVEILESLEAFPSTLPA-----KRESAYAGWVSISVGCNNTCTFCIVPALRGKEVDR 177 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLV 261 V+ E + L+D GV E+TLLGQNVN++ D + + F+ LL + I+GL Sbjct: 178 RPGDVLAEVQALVDQGVLEVTLLGQNVNSYGASFADPDEPRDRGAFAKLLRACGGIEGLE 237 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP + +D +I+A + P LH+P+QSGSDR+LK+M R + Y II++ Sbjct: 238 RVRFTSPHPAEFTDDVIEAMAQTPNICPQLHMPLQSGSDRVLKAMRRSYRKARYLGIIEK 297 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ P AI++D IVGFPGET++DF+ T+D+V + + AF+F+YS R GTP + M +Q Sbjct: 298 VRAAMPHAAITTDIIVGFPGETEEDFQETLDVVRQARFTSAFTFQYSKRPGTPAAEMADQ 357 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 V + V E RL+ LQ+++ ++ N +G +E+L+ + +K R Sbjct: 358 VPKQVVQERYDRLIALQEEI---SLAANRELIGTEVELLVAEGSGKKNAATAR 407 >gi|226366166|ref|YP_002783949.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhodococcus opacus B4] gi|226244656|dbj|BAH55004.1| putative tRNA-thiotransferase [Rhodococcus opacus B4] Length = 525 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 155/427 (36%), Positives = 251/427 (58%), Gaps = 25/427 (5%) Query: 18 VDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 +DQ P R + V++YGCQMNV+DS R+ + GY + + DL+V NTC +RE A Sbjct: 24 IDQ--TPHRSYEVRTYGCQMNVHDSERLSGLLEDAGYTKAAAGQSPDLVVFNTCAVRENA 81 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 K+Y L + K ++ D+ + V GC+AQ + + +++++P V+VV G L Sbjct: 82 DNKLYGNLSHLAPAK----EQNPDMQIAVGGCLAQKDRDVVVKKAPWVDVVFGTHNIGSL 137 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 P LL+RAR +R + + D E R+ +++I GC+ CTFC+VP Sbjct: 138 PALLDRARHNQRA---EVEILDALEAFPSTLPA-KRESAYAGWVSISVGCNNTCTFCIVP 193 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLY 252 RG E+ R ++ E + L++ GV E+TLLGQNVNA+ D + + F+ LL Sbjct: 194 ALRGKEVDRRPGDILAEVQALVNEGVVEVTLLGQNVNAYGVSFADPDQPRDRGAFAALLR 253 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 + EI GL R+R+T+ HP + +D +I+A + + P LH+P+QSGSDR+LK+M R + Sbjct: 254 ACGEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLKAMRRSYRK 313 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + II+++RS P AI++D IVGFPGET++DF+ T+D+V + + AF+F+YS R G Sbjct: 314 SRFLGIIEKVRSAMPHAAITTDIIVGFPGETEEDFQDTLDVVRQARFTSAFTFQYSKRPG 373 Query: 373 TPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEK 425 TP ++M +Q+ + V + ERL+ LQ+++ ++ N VG +E+L+ + E Sbjct: 374 TPAADMDDQLPKAVVQERYERLIALQEQITLEE---NQKLVGAEVELLVATGEGRKNAET 430 Query: 426 GKLVGRS 432 ++ GR+ Sbjct: 431 ARMSGRA 437 >gi|212692499|ref|ZP_03300627.1| hypothetical protein BACDOR_01995 [Bacteroides dorei DSM 17855] gi|212664974|gb|EEB25546.1| hypothetical protein BACDOR_01995 [Bacteroides dorei DSM 17855] Length = 456 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 166/451 (36%), Positives = 268/451 (59%), Gaps = 20/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++D+AD + +NTC IR+ A +K+ + L Sbjct: 18 KKLFIETYGCQMNVADSEVIASIMQMAGYHVCETLDEADAVFMNTCSIRDNAEQKILNRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++K ++ + +L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 78 EFFHSMKKNKRR---NLIVGVLGCMAERVKDDLIENHH-VDLVVGPDAYLTLPDLVASVE 133 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FC +C+VPYTRG E Sbjct: 134 AGEKAINVELSTTETYREVIPSRICGNH-----ISGFVSIMRGCNNFCHYCIVPYTRGRE 188 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E R L G E+TLLGQNVN++R + +GE TF LL +++E +R Sbjct: 189 RSRDVESILNEVRDLAAKGYKEVTLLGQNVNSYRFEK-EGEIITFPMLLRTVAEAVPDMR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++T Y + + I Sbjct: 248 VRFTTSHPKDMSDETLQVIVETPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD +S+D G+ ET++D + ++ L+ + Y AF FKYS R GT S L + Sbjct: 308 RRIIPDCGLSTDIFSGYHSETEEDHQESLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + N VG+ EV++E K + +L GR+ + Sbjct: 368 VPEEVKIRRLNEIIELQNRLSAES---NARDVGKTFEVMVEGVSKRSREQLFGRTQQNKV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + NH IGD + VRIT+ +TL GE V Sbjct: 425 VVFDRGNHRIGDFVHVRITEASSATLKGEEV 455 >gi|134098330|ref|YP_001103991.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Saccharopolyspora erythraea NRRL 2338] gi|291004251|ref|ZP_06562224.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Saccharopolyspora erythraea NRRL 2338] gi|229890638|sp|A4FAJ1|MIAB_SACEN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|133910953|emb|CAM01066.1| methylase of isopentenylated A37 derivatives in tRNA [Saccharopolyspora erythraea NRRL 2338] Length = 491 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 164/421 (38%), Positives = 250/421 (59%), Gaps = 36/421 (8%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + +++YGCQMNV+DS R+ M GY R + D D++V NTC +RE A ++Y LG Sbjct: 5 YQIRTYGCQMNVHDSERLAGMLEDAGYVRAGTDVDPDVVVFNTCAVRENADNRLYGNLGH 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R K+ + + V GC+AQ + EI++R+P V+VV G LP LLERAR Sbjct: 65 LRPAKD----RNPGMQIAVGGCLAQKDRGEIVKRAPWVDVVFGTHNLGSLPTLLERAR-- 118 Query: 147 KRVVDTDYSVEDKFERLSIVDG-----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 ++ E + E L +D R+ + ++++ GC+ CTFC+VP RG Sbjct: 119 -------HNEEAEVEILESLDVFPSTLPARRESAYSGWVSVSVGCNNTCTFCIVPALRGK 171 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 E R +++ E + L+ GV E+TLLGQNVNA+ G++ G++ F LL S EI+GL Sbjct: 172 EKDRRPGEILSEVQALVSEGVLEVTLLGQNVNAY---GVEFGDRFAFGKLLRSCGEIEGL 228 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HPRD +D +I A + + LH+P+QSGSDR+LK M R + + Y I+ Sbjct: 229 ERVRFTSPHPRDFTDDVIAAMAETPNVCHQLHMPLQSGSDRVLKQMRRSYRSQRYLDILR 288 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R PD AI++D IVGFPGET++DF ATM +V + +A AF+F+YS R GTP + M Sbjct: 289 KVREAMPDAAITTDIIVGFPGETEEDFEATMQVVREARFASAFTFQYSKRPGTPAAEMEG 348 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFN--DACVGQIIEVLI-EKHGK---EKGKLVGR 431 Q+ + V + +RL+ LQ Q+S++ VG+ +E+L+ E G+ E +L GR Sbjct: 349 QLPKEVVQQRYDRLIELQN-----QISWDVGKELVGRSVELLVAEGEGRKDTETHRLSGR 403 Query: 432 S 432 + Sbjct: 404 A 404 >gi|255534247|ref|YP_003094618.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Flavobacteriaceae bacterium 3519-10] gi|255340443|gb|ACU06556.1| tRNA-i(6)A37 methylthiotransferase [Flavobacteriaceae bacterium 3519-10] Length = 508 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 176/463 (38%), Positives = 263/463 (56%), Gaps = 29/463 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGCQMN DS + + QGY + ++ADLI+LNTC IREKA + V L Sbjct: 48 KKLFLESYGCQMNFSDSEIVASILSKQGYNTTLNHEEADLILLNTCSIREKAEQTVRMRL 107 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +NLK KE +L V V GC+A+ + L +V++VVGP Y LP LL+ Sbjct: 108 SQFKNLK----KERPNLTVGVLGCMAERLKTKFLEEEQLVDLVVGPDAYRDLPNLLKETD 163 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ ++ S ++ + ++ V G N GVTAF+TI GCD CTFCVVP+TRG E S Sbjct: 164 SGRDAINVILSKDETYADINPVRLGGN---GVTAFVTITRGCDNMCTFCVVPFTRGRERS 220 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGE-----------KCTFSDLL 251 R +V+E + L +NG EITLLGQNV++ W G G + F+ LL Sbjct: 221 RDPHSIVEECKTLWENGYKEITLLGQNVDSYLWYGGGAKKDFKNASEMQQLTAIRFAQLL 280 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++ +R+R++TS+P DM+ + + D + Y+HLPVQSGSDRIL+ MNR+HT Sbjct: 281 EMVAVAVPEMRIRFSTSNPHDMTVDVFEVMAKHDNICKYVHLPVQSGSDRILEKMNRQHT 340 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY +I+R + + P+I+ S D I+GF GET++D + T+ L+ ++ Y + F YS R Sbjct: 341 RAEYLNLINRAKEIVPEISFSQDMIIGFCGETEEDHQLTLSLMREVEYDYGYMFAYSERP 400 Query: 372 GTPGSNMLE-QVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KG 426 GTP +E V +VK RL + LQ +L +++ G++ EVLIE K+ + Sbjct: 401 GTPAHRKMEDDVPADVKQRRLAEVIALQGELSRKRMQ---GYAGRMHEVLIEGTSKKNQN 457 Query: 427 KLVGRSPWLQSVVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468 + GR+ V + ++ +GDI+ V + TL G V Sbjct: 458 QWKGRNSQNAVCVFDKLEDQKLGDIVTVFVHGNTQGTLLGTTV 500 >gi|325107255|ref|YP_004268323.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Planctomyces brasiliensis DSM 5305] gi|324967523|gb|ADY58301.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Planctomyces brasiliensis DSM 5305] Length = 497 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 172/479 (35%), Positives = 268/479 (55%), Gaps = 34/479 (7%) Query: 17 IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 I+ Q P++ F+++ GCQMNV DS + GYE ++M AD I+ NTC +RE A Sbjct: 11 IMSQSEAPKKLFIETVGCQMNVLDSELVVAALRKDGYELTDNMKKADTILFNTCSVREHA 70 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 +K+YS LGR++ K +R DL++ V GC+AQ + ++I +++P V++VVG + Sbjct: 71 EQKIYSQLGRLKYSKQTR----PDLVIGVMGCMAQKDQKKIFQKAPQVDLVVGTGQLAEI 126 Query: 137 PELLERARFGK---------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187 P L+ AR + R T V F+ + R AF+ I GCD Sbjct: 127 PRLVVEAREKRDRQLAVSLSRKGGTRQEVSSSFQSYDPLRDPEMRPSPYQAFVRITFGCD 186 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247 KFCT+CVVP TRG E SR+ S+++ E + L D GV EITLLGQ VN++R +G++ Sbjct: 187 KFCTYCVVPMTRGPEQSRNPSEILKETKALADQGVQEITLLGQTVNSYRLTE-NGKEYRL 245 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 +DLL L E++G+ R+++ T++P+DM++ L++A D + YLH+P+Q G D LK M Sbjct: 246 ADLLTMLHEVEGIKRIKFVTNYPKDMTNDLLQAVRDYKKVSHYLHVPLQHGCDEQLKLMK 305 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R +T +YR ++ RIR P ++SSDFIVGF GET++ + +++ + + + +F FKY Sbjct: 306 RGYTTEDYRDMMGRIREHLPHASVSSDFIVGFCGETEESHQKSLEAIREYRFKNSFIFKY 365 Query: 368 SPRLGT-PGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 S R GT +N + + + VK R +L LQ + + N +G+ +EVL+E K Sbjct: 366 SERAGTKAAANFADDIPDEVKKRRNNEMLDLQNAISAED---NAEFIGREVEVLVEGPSK 422 Query: 424 EKGK-------------LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 K L+GR+ + VV N + G + +V I D +TL G +V Sbjct: 423 NAVKAEQNRPSNATPDQLMGRTRCDRIVVFNGNSRLTGSLTQVAIHDCTPTTLMGNIVT 481 >gi|308176878|ref|YP_003916284.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arthrobacter arilaitensis Re117] gi|307744341|emb|CBT75313.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arthrobacter arilaitensis Re117] Length = 509 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 165/452 (36%), Positives = 273/452 (60%), Gaps = 33/452 (7%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEKV 80 P+ + V+++GCQMNV+DS R+ + + G R + + AD++V NTC +RE A K+ Sbjct: 16 PRTYEVRTFGCQMNVHDSERLSGLLENAGLSRKPEEQAEEVADVVVFNTCAVRENADNKL 75 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 Y LG ++NLK R + + V GC+AQ + + I++++P V+VV G LP LL Sbjct: 76 YGHLGLLKNLKAER----PGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGSLPALL 131 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGY-NRKRGVTA-FLTIQEGCDKFCTFCVVPYT 198 +RA K+ + + E L + R+ V A +++I GC+ CTFC+VP Sbjct: 132 DRATHNKK------AQLEILESLDVFPSTLPTRRESVYAGWVSISVGCNNTCTFCIVPSL 185 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEI 257 RG E R +++ E + L+D+G E+TLLGQNVN++ G++ G++ F LL + EI Sbjct: 186 RGKERDRRPGEILAEIQALVDDGAIEVTLLGQNVNSY---GVEFGDRLAFGKLLRACGEI 242 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +GL R+R+T+ HP +D +I+A + +MP LH+P+QSGSD++LK M R + + ++ Sbjct: 243 EGLERVRFTSPHPAAFTDDVIEAMAETPNVMPQLHMPLQSGSDKVLKDMRRSYRSKKFLG 302 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 I+D++R P AI++D IVGFPGET++DF+AT+D+V ++ AF+F+YS R GTP + Sbjct: 303 ILDKVRERIPHAAITTDIIVGFPGETEEDFQATLDVVQASRFSSAFTFQYSKRPGTPAAE 362 Query: 378 MLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK---EKGKLVG 430 + EQ+ + V + ERL LQ ++ +++ N +G+ +EV++ E+ G+ E +L G Sbjct: 363 LEEQLPKAVVQERYERLTQLQDRIAKEE---NAKQLGRTVEVMVTEQSGRKSAETHRLTG 419 Query: 431 RSPWLQ----SVVLNSKNHNIGDIIKVRITDV 458 R+ + SV ++ GD+ + IT+V Sbjct: 420 RAQDQRLVHFSVPDGAETPRPGDLATLPITEV 451 >gi|157413867|ref|YP_001484733.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Prochlorococcus marinus str. MIT 9215] gi|229890599|sp|A8G6B6|MIAB_PROM2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|157388442|gb|ABV51147.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT 9215] Length = 464 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 171/455 (37%), Positives = 265/455 (58%), Gaps = 23/455 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM GY R + ADL++ NTC IR+ A +KVYSFLGR Sbjct: 21 YWITTFGCQMNKADSERMAGTLEKMGYTRADDELKADLVLYNTCTIRDNAEQKVYSFLGR 80 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + L +VVAGC+AQ EGE +LRR P +++V+GPQ L LL + G Sbjct: 81 ----QAKRKHKIPSLKLVVAGCLAQQEGESLLRRVPELDLVMGPQHVNNLENLLGKVDLG 136 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +V T E+ F I + R+ + ++ I GC++ C++CVVP RG E SR Sbjct: 137 NQVAAT----EETFISEDITNA--RRESSICGWVNIIYGCNERCSYCVVPSVRGKEQSRY 190 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260 + E +KL ++ EITLLGQN++A+ G+ L G ++ T +DLLY + +++G+ Sbjct: 191 PDAIKSEIQKLANDNFKEITLLGQNIDAY-GRDLPGTTKEGRKENTLTDLLYYIHDVEGI 249 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHPR S LI+A +LD + + H+P QSG++ ILK M R +T +Y++II+ Sbjct: 250 RRIRFATSHPRYFSRRLIQACYELDKVCEHFHIPFQSGNNEILKLMARGYTIDKYKRIIE 309 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IRS+ P+ +I++D IV FPGE+++ +R T+ L+ IG+ Q + YSPR TP + Sbjct: 310 NIRSLMPNASITADAIVAFPGESEEQYRDTLKLISDIGFDQVMTAAYSPRPNTPAALWHN 369 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSP----WL 435 Q+ E VK ERL + + + N+ + I VLIE + K +++GR+ Sbjct: 370 QISEEVKKERLKEINELVETTSKQRNERYLDSIESVLIEGFNPKNSSQIMGRTRTNRLTF 429 Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELVV 469 + N K N ++GD I V+I + + +L G L + Sbjct: 430 VEIPKNIKFNFSLGDEIDVKINEARPFSLTGILCL 464 >gi|227503441|ref|ZP_03933490.1| tRNA 2-methylthioadenosine synthase [Corynebacterium accolens ATCC 49725] gi|227075944|gb|EEI13907.1| tRNA 2-methylthioadenosine synthase [Corynebacterium accolens ATCC 49725] Length = 489 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 160/441 (36%), Positives = 245/441 (55%), Gaps = 31/441 (7%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNV+DS R+ + GY + + DLIV NTC +RE A +++Y LG ++ K + Sbjct: 1 MNVHDSERISGLLEEAGYAAADEATEPDLIVFNTCAVRENADKRLYGTLGALKKTKENHP 60 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 + + V GC+AQ + + +L +P V+ V G LP LLERAR + + Sbjct: 61 G----MQIAVGGCLAQKDKDTVLDNAPWVDAVFGTHNMAALPTLLERARHNE---EAQVE 113 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 + D E V R+ ++++ GC+ CTFC+VP RG E R ++ E + Sbjct: 114 IVDSLEAFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEEDRRPGDILAEVQ 172 Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLVRLRYTTSHPR 271 L+D GV E+TLLGQNVNA+ D E + FS LL + +I GL RLR+T+ HP Sbjct: 173 ALVDQGVSEVTLLGQNVNAYGVNFADPEMPRDRFAFSKLLREVGKIDGLERLRFTSPHPA 232 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 + + +I A + + P LH+P+QSGSD++LK M R + ++ +I+D +R P+ AI Sbjct: 233 EFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMRRSYRTKKFLRILDEVREKIPNAAI 292 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KA 388 ++D IVGFPGET++DF+ATMDLV + +A AF+F+YSPR GTP + M QV + V + Sbjct: 293 TTDIIVGFPGETEEDFQATMDLVRRARFASAFTFQYSPRPGTPAAEMENQVPKEVVQDRF 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-------------GKLVGRSPWL 435 ERL+ LQ ++ ++ N VG +E+L++ G K G+LV SP Sbjct: 353 ERLVALQDSIQAEE---NQKLVGTEVELLVQAEGGRKNDETHRMSGRARDGRLVHFSPID 409 Query: 436 QSVVLNSKNHNIGDIIKVRIT 456 + S GD+++ ++T Sbjct: 410 ANGADISAEIRPGDVVRTKVT 430 >gi|281421531|ref|ZP_06252530.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella copri DSM 18205] gi|281404603|gb|EFB35283.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella copri DSM 18205] Length = 444 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 163/450 (36%), Positives = 265/450 (58%), Gaps = 15/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GYE ++AD I LNTC IRE A K+Y L Sbjct: 2 KKLFIETYGCQMNVADSEVVASVMQMAGYEICEKEEEADAIFLNTCSIRENAENKIYHRL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ K+G +++ V GC+A+ +++++ + N+V GP +Y LP+++ + Sbjct: 62 DTL----HAEQKKGRKVILGVLGCMAERVKDDLIQ-NHYANLVCGPDSYLNLPDMIAQCE 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G ++ + S + + + G NR V+ F++I GC+ FC +C+VPYTRG E S Sbjct: 117 MGTNAINIELSKTETYRDIVPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPYTRGRERS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGL 260 R ++ E R L G E+TLLGQNVN++ GK +G +F++LL+ +++ Sbjct: 174 RDAESILREVRDLQQRGFKEVTLLGQNVNSYGLSPSGKREEG-SLSFAELLHMVAQAVPD 232 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R+R+TTS+P DM++ ++ A + L ++H P QSGS++ILK MNR++T EY Q I Sbjct: 233 MRVRFTTSNPEDMTEDILHAIAEEPNLCKHIHFPAQSGSNKILKLMNRKYTREEYLQRIA 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379 I+ + P I++D VG+ ET++D + T+ LV ++G+ AF FKYS R GT + L Sbjct: 293 DIKRIIPGCGITTDIFVGYHDETEEDHQETLSLVKEVGFDSAFMFKYSERPGTYAAKHLP 352 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 + V E K RL L K E N G++ +LIE K + +++GR+ ++V Sbjct: 353 DNVSEETKIARLNELIKLQTEVSAEQNKKDEGKVFTILIENFSKRSREQMMGRTEQNKAV 412 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V++ NH+IG+ +KVRIT +TL+GE V Sbjct: 413 VIDKGNHHIGEFVKVRITGSTSATLFGEEV 442 >gi|78185107|ref|YP_377542.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus sp. CC9902] gi|123743500|sp|Q3AV90|MIAB_SYNS9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|78169401|gb|ABB26498.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. CC9902] Length = 472 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 178/455 (39%), Positives = 268/455 (58%), Gaps = 31/455 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM + S GY + DADL++ NTC IR+ A +KVYS+LGR Sbjct: 24 YWITTFGCQMNKADSERMAGILESMGYCEATAELDADLVLYNTCTIRDNAEQKVYSYLGR 83 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R ++ +L +VVAGCVAQ EGE +LRR P +++V+GPQ RL LL++ G Sbjct: 84 ----QAQRKRDNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLQQVDSG 139 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++VV T+ E ++ R + ++ + GC++ CT+CVVP RG E SR Sbjct: 140 QQVVATEE--HHILEDITTA----RRDSAICGWVNVIYGCNERCTYCVVPSVRGQEQSRR 193 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260 + E L G EITLLGQN++A+ G+ L G + T +DLL+ + +++G+ Sbjct: 194 PEAIRLEMEGLAAQGFKEITLLGQNIDAY-GRDLPGITAEGRREHTLTDLLHHVHDVEGI 252 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR+ TSHPR ++ LI A DL + + H+P QSG + +LKSM R +T YR+IID Sbjct: 253 ERLRFATSHPRYFTERLIDACADLSKVCEHFHIPFQSGDNALLKSMARGYTVERYRRIID 312 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR PD +IS+D IVGFPGETD +R T+DL+D+I + Q + YSPR TP + Sbjct: 313 RIRDRMPDASISADVIVGFPGETDAQYRRTLDLIDEIAFDQVNTAAYSPRPNTPAATWDN 372 Query: 381 QVDENVKAERL----LCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS--- 432 Q+ E+VK ERL +++ RE+ + + G+ EVL E + K+ +L+GR+ Sbjct: 373 QLPESVKVERLKEINALVERNARERNIRYQ----GRTEEVLAEGINPKDPEQLMGRTRTN 428 Query: 433 --PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 + + + + GD++ VRI V+ +L G Sbjct: 429 RLTFFSATSPDGHLYQPGDLVNVRIDAVRSFSLSG 463 >gi|256375581|ref|YP_003099241.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Actinosynnema mirum DSM 43827] gi|255919884|gb|ACU35395.1| RNA modification enzyme, MiaB family [Actinosynnema mirum DSM 43827] Length = 491 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 159/440 (36%), Positives = 256/440 (58%), Gaps = 18/440 (4%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++F ++++GCQMNV+DS R+ M + GY + + AD++V NTC +RE A K+Y Sbjct: 4 PKKFEIRTFGCQMNVHDSERLAGMLEAAGYAAASGGESADVVVFNTCAVRENADNKLYGT 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + K + D+ + V GC+AQ + I++R+P V+VV G LP LLERA Sbjct: 64 LGHLAPAKAANP----DMQIAVGGCLAQKDQAAIVKRAPWVDVVFGTHNIGSLPVLLERA 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R + + + D E R + ++++ GC+ CTFC+VP RG E Sbjct: 120 RHNR---EAQVEILDSLETFPSTLPA-RRDSAYSGWVSVSVGCNNTCTFCIVPSLRGKEK 175 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 R +V+ E + L+ GV E+TLLGQNVN++ G++ G++ F LL + +++GL R Sbjct: 176 DRRPGEVLAEVQALVAEGVLEVTLLGQNVNSY---GVEFGDRYAFGKLLRACGDVEGLER 232 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP+D +D +I A + + LH+P+QSGSDR+LK M R + Y I++ + Sbjct: 233 VRFTSPHPKDFTDDVIAAMAETPNVCHQLHMPLQSGSDRVLKEMRRSYRTGRYLSILENV 292 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ PD AI++D IVGFPGET+ DF+AT+D+V + ++ AF+F+YS R GTP + + +Q+ Sbjct: 293 RAAMPDAAITTDIIVGFPGETEADFQATLDVVREARFSSAFTFQYSKRPGTPAAELPDQL 352 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPWLQSV 438 + V ER L + E + N A VG+++EVL + E ++ GR+ + V Sbjct: 353 PKQVVQERYDRLVTLVNELAWAENKAQVGRVVEVLASAGEGRKDTETNRMSGRARDGKLV 412 Query: 439 VLNSKNHNI--GDIIKVRIT 456 + + GD+++ IT Sbjct: 413 HFTPGDARVRPGDVVETAIT 432 >gi|34763969|ref|ZP_00144862.1| tRNA 2-methylthioadenosine synthase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886260|gb|EAA23543.1| tRNA 2-methylthioadenosine synthase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 435 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 158/441 (35%), Positives = 262/441 (59%), Gaps = 16/441 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV +S +++ +F + GY+ +D+AD + LNTC +RE AA +++ LG ++ L Sbjct: 8 TYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGKLGELKAL 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K R ++ V GC AQ +GEE++++ PI+++V+G Q R+P+ +E+ + Sbjct: 68 KEKR-----GTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIENNESTH 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + ED+ + G ++ TA ++I GC+ FCTFC+VPY RG E S L ++ Sbjct: 123 EVYTDNEDELPPRLDAEFGSDQ----TASISITYGCNNFCTFCIVPYVRGRERSVPLEEI 178 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V + + + G EI LLGQNVN++ +G+ F+ LL + +++G +R+ + HP Sbjct: 179 VKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLDEICKVEGDYIVRFVSPHP 236 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 RD +D +I D + LHLP+QSGS +IL+ M R +T +Y ++D+I+S P +A Sbjct: 237 RDFTDDVIDVIAKNDKISKCLHLPLQSGSSQILRKMGRGYTKEKYLALVDKIKSKIPGVA 296 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 +++D IVGFPGET++DF T+D+V K+ + ++ F YS R GT + M Q++E VK ER Sbjct: 297 LTADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAAIMDNQIEEAVKKER 356 Query: 391 LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI- 447 L L + + + SF ++ +I++VL+E K+ +++ VVL N + Sbjct: 357 LQRLME--VQNKCSFEESSKYKDRIVKVLVEGPSKKNKEVLSGRTSTNKVVLFKGNLGLK 414 Query: 448 GDIIKVRITDVKISTLYGELV 468 G + V+I + K TLYGE+V Sbjct: 415 GQFVNVKINECKTWTLYGEIV 435 >gi|169334037|ref|ZP_02861230.1| hypothetical protein ANASTE_00430 [Anaerofustis stercorihominis DSM 17244] gi|169258754|gb|EDS72720.1| hypothetical protein ANASTE_00430 [Anaerofustis stercorihominis DSM 17244] Length = 438 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 172/448 (38%), Positives = 259/448 (57%), Gaps = 16/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + +YGCQMN DS ++ M GY R DADLI++NTC +RE A + + L Sbjct: 2 KKYLIITYGCQMNENDSEKISGMVEELGYSRTEDEKDADLIIMNTCSVRENANNRFFGNL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG---EEILRRSPIVNVVVGPQTYYRLPELLE 141 G + LK + DL++ V GC+ Q EG ++I + V++V G LP LLE Sbjct: 62 GNFKKLKKKK----PDLILAVCGCMMQ-EGHIVKKIKEKYSFVDIVFGTHNISSLPSLLE 116 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 ++++ DK V + K AF++I +GC+ FC++C+VPYTRG Sbjct: 117 ECDAKRKLIVEVLEDSDKLAEGLPVHRQFKHK----AFVSIMKGCNNFCSYCIVPYTRGR 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R+L ++GV E+TLLGQNVN++ GK LD + F+ LL +SE++G+ Sbjct: 173 ERSREYQNILSEVRELANDGVKEVTLLGQNVNSY-GKNLD-DPVPFAKLLKMVSEVEGIE 230 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D+SD LI+ D + ++HLP+QSGS RILK MNR + Y +++ + Sbjct: 231 RVRFMTSHPKDLSDELIEVIRDNPKICRHIHLPMQSGSSRILKLMNRHYDKDTYIKLVKK 290 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR PD+AI++D IVGFP ET++DF T+D+ K + AF+F YS R GT + M Q Sbjct: 291 IRREIPDVAITTDIIVGFPTETEEDFLDTLDVYKKCEFDTAFTFIYSKREGTKAAVMDGQ 350 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 +DE +R L K E + N + + +++LI+ K L GR+ + V Sbjct: 351 IDEKTVKDRFDRLLKLHDEIVLKQNKKYLNREVDILIDGKSKTNDNVLTGRTSSFKLVNF 410 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 K GDI+KV+ITDV L GE++ Sbjct: 411 TGKGET-GDIVKVKITDVHTFHLSGEVI 437 >gi|313206813|ref|YP_004045990.1| tRNA-i(6)a37 thiotransferase enzyme miab [Riemerella anatipestifer DSM 15868] gi|312446129|gb|ADQ82484.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Riemerella anatipestifer DSM 15868] gi|315023886|gb|EFT36888.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Riemerella anatipestifer RA-YM] gi|325335747|gb|ADZ12021.1| 2-methylthioadenine synthetase [Riemerella anatipestifer RA-GD] Length = 477 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 179/460 (38%), Positives = 263/460 (57%), Gaps = 29/460 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGCQMN DS + + +GY +++ADLI+LNTC IREKA + V L Sbjct: 25 KKLFLESYGCQMNFSDSEIVASILNDEGYNTTLKVEEADLILLNTCSIREKAEQTVRMRL 84 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +NLK KE L V V GC+A+ + L +V++VVGP Y LP LL+ Sbjct: 85 SQFKNLK----KEKPSLTVGVLGCMAERLKTKFLEEEQLVDLVVGPDAYRDLPNLLKETE 140 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ ++ S E+ + ++ V G N GVTAF+TI GCD CTFCVVP+TRG E S Sbjct: 141 DGRDAINVILSKEETYADINPVRLGGN---GVTAFVTITRGCDNMCTFCVVPFTRGRERS 197 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKG--LDGEKCT---------FSDLL 251 R ++ E ++L +NG EITLLGQNV++ W G G D +K T FS LL Sbjct: 198 RDPHSIIKECQELWENGYKEITLLGQNVDSYLWYGGGPKKDFDKATEMQKATAVDFSQLL 257 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +++ +R+R++TS+P+DMS + + + Y+HLPVQ+GS+++L+ MNR+HT Sbjct: 258 EMVAKAVPEMRIRFSTSNPQDMSLEVFRKMAQYPNICKYVHLPVQTGSNKMLELMNRQHT 317 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY ++I R + PD+A S D IVGF ET++D + T+ L+ ++ Y + F YS R Sbjct: 318 REEYLELIREARKIVPDVAFSQDMIVGFCNETEEDHQDTLSLMREVEYDYGYMFAYSERP 377 Query: 372 GTPGSNMLE-QVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKG 426 GTP +E V VK RL + LQ +L +++ VG+ E+LIE + K+K Sbjct: 378 GTPAHKKMEDNVPAEVKKRRLQEVIDLQGELSRKRMK---GYVGRHHEILIEGESKKDKN 434 Query: 427 KLVGRSPWLQSVVLNSKN-HNIGDIIKVRITDVKISTLYG 465 + GR+ V + K IGDI+ V + D TL G Sbjct: 435 QWKGRNSQNAVCVFDKKEGQKIGDIVSVFVYDNTQGTLLG 474 >gi|158313078|ref|YP_001505586.1| RNA modification protein [Frankia sp. EAN1pec] gi|229890538|sp|A8L6J8|MIAB_FRASN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|158108483|gb|ABW10680.1| RNA modification enzyme, MiaB family [Frankia sp. EAN1pec] Length = 494 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 166/412 (40%), Positives = 241/412 (58%), Gaps = 18/412 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + S GY DAD++V NTC +RE A ++Y LG Sbjct: 6 YQVRTFGCQMNVHDSERLAGLLESAGYVPAPEGSDADVVVFNTCAVRENADNRLYGNLGH 65 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + K S + + V GC+AQ + IL R+P V+VV G +RLP LLERAR Sbjct: 66 LYPAKKSNPA----MQIAVGGCLAQKDRSVILDRAPWVDVVFGTHNIHRLPVLLERARH- 120 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++ VE E L + +R +A+++I GCD CTFC+VP RG E Sbjct: 121 ----NSAAQVEIA-EALEVFPSSLPARRASHHSAWVSISVGCDNTCTFCIVPSLRGGERD 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R V+ E L+ G EITLLGQNVN++ G+ L G+ F+ LL + ++GL R+R Sbjct: 176 RRPGDVLAEVEALVAEGALEITLLGQNVNSY-GRSL-GDPGAFAKLLRACGRVEGLERVR 233 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HPRD +D +I+A + P LH+P+QSGSD +L+ M R + + I++R+R+ Sbjct: 234 FTSPHPRDFTDDVIEAMAQTPNVCPQLHMPLQSGSDVVLRRMRRSYRRERFLGIVERVRA 293 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD AI++D IVGFPGET+ DF T+D+V +A AF+FKYSPR GTP + M VD Sbjct: 294 AMPDAAITTDIIVGFPGETEADFADTLDVVRTARFAGAFTFKYSPRPGTPAAEMDGAVDP 353 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRS 432 V +ER L E + N A VG+ +E+++ E G++ G+L GR+ Sbjct: 354 AVVSERYGRLASLQDEMSWAENRAQVGRRVEIVVAEGEGRKDSATGRLSGRA 405 >gi|227488710|ref|ZP_03919026.1| tRNA 2-methylthioadenosine synthase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542291|ref|ZP_03972340.1| tRNA 2-methylthioadenosine synthase [Corynebacterium glucuronolyticum ATCC 51866] gi|227091371|gb|EEI26683.1| tRNA 2-methylthioadenosine synthase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181891|gb|EEI62863.1| tRNA 2-methylthioadenosine synthase [Corynebacterium glucuronolyticum ATCC 51866] Length = 483 Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 159/415 (38%), Positives = 247/415 (59%), Gaps = 27/415 (6%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDD---------ADLIVLNTCHIREKAAEKVYSFLGR 86 MNV+DS R+ + S GY D DLIV NTC +RE AA+++Y LG+ Sbjct: 1 MNVHDSERLSGLLESAGYVAYEGEDPLVAGDHTVVPDLIVFNTCAVRENAAQRLYGTLGQ 60 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + +K ++ + + V GC AQ +G++I+ ++P V+VV G LP LL+RA Sbjct: 61 LLGVK----EDHPTMQIAVGGCQAQNDGKKIIEKAPWVDVVFGTHNLGSLPALLDRASHN 116 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 KR + ++D E V R+ + +++I GC+ CTFC+VP+ RG E+ R Sbjct: 117 KRA---EVEIKDALEDFPSVLPA-KRESAYSGWVSISVGCNNTCTFCIVPHLRGKELDRR 172 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ++ E R L++ GV E+TLLGQNVNA+ ++ ++ FS LL + EI GL R Sbjct: 173 PGDILAEVRALVEQGVEEVTLLGQNVNAYGVNFADPSVERDRSAFSKLLRACGEIDGLER 232 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+T+ HP + + +I A D + P LH+P+QSGSD++LK M R + ++ I+D + Sbjct: 233 LRFTSPHPAEFTSDVIDAMVDTPNICPQLHMPLQSGSDQVLKRMRRSYRTKKFLSILDEV 292 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P AI++D IVGFPGET++DF+ T+D+V++ + AF+F+YSPR GTP ++ +QV Sbjct: 293 REKIPHAAITTDIIVGFPGETEEDFQKTLDVVERARFTSAFTFQYSPRPGTPAASYEDQV 352 Query: 383 DENVKAERLLCLQKKLREQQVSFNDAC-VGQIIEVLIEKHGKEKG----KLVGRS 432 + V ER LQ L+E+ + +AC VGQ +E+L+++H +KG +L GR+ Sbjct: 353 PKEVVQERFERLQ-ALQERICAEENACFVGQEVELLVQEHQSKKGTENHRLSGRA 406 >gi|116072319|ref|ZP_01469586.1| hypothetical protein BL107_11046 [Synechococcus sp. BL107] gi|116064841|gb|EAU70600.1| hypothetical protein BL107_11046 [Synechococcus sp. BL107] Length = 518 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 177/455 (38%), Positives = 267/455 (58%), Gaps = 31/455 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM + + GY + DADL++ NTC IR+ A +KVYS+LGR Sbjct: 72 YWITTFGCQMNKADSERMAGILETMGYREATAELDADLVLYNTCTIRDNAEQKVYSYLGR 131 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R ++ +L +VVAGCVAQ EGE +LRR P +++V+GPQ RL LL++ G Sbjct: 132 ----QAQRKRDNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLQQVDSG 187 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++VV T+ E ++ R + ++ + GC++ CT+CVVP RG E SR Sbjct: 188 QQVVATEE--HHILEDITTA----RRDSAICGWVNVIYGCNERCTYCVVPSVRGQEQSRQ 241 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260 + E L G EITLLGQN++A+ G+ L G + T +DLL+ + +++GL Sbjct: 242 PGAIRLEMEGLAAQGFKEITLLGQNIDAY-GRDLPGITAEGRREHTLTDLLHQVHDVEGL 300 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR+ TSHPR ++ LI A DL + + H+P QSG + +LKSM R +T YR+IID Sbjct: 301 ERLRFATSHPRYFTERLIDACADLPKVCEHFHIPFQSGDNELLKSMARGYTVERYRRIID 360 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR PD +IS+D IVGFPGETD +R T++L+D+I + Q + YSPR TP + Sbjct: 361 RIRDRMPDASISADVIVGFPGETDAQYRRTLNLIDEIAFDQVNTAAYSPRPNTPAATWDN 420 Query: 381 QVDENVKAERL----LCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS--- 432 Q+ E+VK ERL +++ RE+ + G+ EVL E + K+ +L+GR+ Sbjct: 421 QLSESVKVERLKEINALVERNARERNARYQ----GRTEEVLAEGINPKDPEQLMGRTRTN 476 Query: 433 --PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 + + + + GD++ VRI V+ +L G Sbjct: 477 RLTFFSATSADGHLYQPGDLVNVRIDAVRSFSLSG 511 >gi|317506460|ref|ZP_07964261.1| MiaB family RNA modification enzyme [Segniliparus rugosus ATCC BAA-974] gi|316255221|gb|EFV14490.1| MiaB family RNA modification enzyme [Segniliparus rugosus ATCC BAA-974] Length = 519 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 159/463 (34%), Positives = 268/463 (57%), Gaps = 38/463 (8%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + ++++GCQMNV+DS R+ + + G+ + AD++V NTC +RE A +++Y LG Sbjct: 29 YELRTFGCQMNVHDSERLAGLLEADGHVKAEPGQTADVVVFNTCAVRENADDRLYGTLGH 88 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R +K++ + + V GC+AQ +G+ +LR++P V+VV G LP LL RA Sbjct: 89 LRPVKDANP----GMQIAVGGCLAQKDGDTVLRKAPWVDVVFGTHNIGSLPALLRRAAHN 144 Query: 147 K----RVVDTDYSVEDKF--ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + +VD+ + +R S+ G +++I GC+ CTFC+VP RG Sbjct: 145 QAAQVEIVDSLQAFPSTLPSKRDSLHAG----------WVSIAVGCNNTCTFCIVPSLRG 194 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG----KGLDGEKCTFSDLLYSLSE 256 ++ R+ ++ E R L+ GV E+TLLGQNVNA+ L ++ F+ LL S+ E Sbjct: 195 KQLDRAPEEIAAEVRALVAEGVLEVTLLGQNVNAYGSSFADPALARDRGAFAKLLRSMGE 254 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I+GL R+R+T+ HP + ++ ++ A + + P+LH+P+QSGSDRILK+M R + + ++ Sbjct: 255 IEGLERVRFTSPHPAEFTEDVVLAMAETPNVCPHLHMPLQSGSDRILKAMRRSYRSAKFL 314 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 I+ R+R + PD AI++D IVGFPGET++DF+ T+++V + +A A++F+YS R GTP + Sbjct: 315 GIVRRVRELLPDAAITTDIIVGFPGETEEDFQQTLEVVAEARFASAYTFQYSKRPGTPAA 374 Query: 377 NMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE-----KHGKEKGKL 428 + +QV + V AE RL+ LQ+++ ++ N +G+ +E+++ K + +L Sbjct: 375 ELPDQVAKEVVAERYQRLVDLQERICLEE---NRKQLGREVELVVAAPHEGKKNAQTARL 431 Query: 429 VGRSP---WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 GR+ + L GD + RI L GE V Sbjct: 432 SGRAKDGRLVHFSPLPGAQPRPGDFVVARIAHAAPHHLIGEAV 474 >gi|257056745|ref|YP_003134577.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Saccharomonospora viridis DSM 43017] gi|256586617|gb|ACU97750.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Saccharomonospora viridis DSM 43017] Length = 494 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 164/445 (36%), Positives = 254/445 (57%), Gaps = 30/445 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + ++++GCQMNV+DS R+ GY + AD++VLNTC +RE A K+Y LG Sbjct: 5 YTIRTFGCQMNVHDSERLAGQLEEAGYSLAAEGEQADVVVLNTCAVRENADNKLYGHLGH 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R K + + + V GC+AQ + EI+RR+P V+VV G LP LLERAR Sbjct: 65 LRAAKAANP----GMQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNLGSLPVLLERARHN 120 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V+ ++E L R+ + +++I GC+ CTFC+VP RG E R Sbjct: 121 AEAQVEIVEALETFPSTLPA-----RRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDR 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 +++ E L+ GV E+TLLGQNVN++ G++ G++ F LL S I GL R+R Sbjct: 176 RPGEILAEVEALVAEGVLEVTLLGQNVNSY---GVEFGDRYAFGKLLRSCGSIDGLERVR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP +D +I A + + LH+P+QSGSDR+LK+M R + + + I+D++R+ Sbjct: 233 FTSPHPAAFTDDVIDAMAETPNVCHQLHMPLQSGSDRVLKAMRRSYRSARFLSILDKVRA 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD AI++D IVGFPGET++DF+ T+++V + ++ AF+F+YSPR GTP + M +QV + Sbjct: 293 AMPDAAITTDIIVGFPGETEEDFQQTLEVVRQARFSSAFTFQYSPRPGTPAAEMPDQVPK 352 Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRSPWLQS 437 V E RL+ LQ + Q+ N VG +E+L+ + E ++ GR+ + Sbjct: 353 EVVQERYDRLVELQNDISWQE---NRKLVGTTVELLVATGEGRKDAETHRMSGRARDGRL 409 Query: 438 VVLNSKNHNI------GDIIKVRIT 456 V + I GDI++ IT Sbjct: 410 VHFTPRGDAIDRKIRPGDIVETTIT 434 >gi|187735351|ref|YP_001877463.1| RNA modification enzyme, MiaB family [Akkermansia muciniphila ATCC BAA-835] gi|229890497|sp|B2UQE7|MIAB_AKKM8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|187425403|gb|ACD04682.1| RNA modification enzyme, MiaB family [Akkermansia muciniphila ATCC BAA-835] Length = 458 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 165/454 (36%), Positives = 266/454 (58%), Gaps = 19/454 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++K+YGCQMN DS ++ MF +GY + D+AD+I+ N+C IRE+A +K +G Sbjct: 3 KLYIKTYGCQMNERDSEQVARMFVQKGYTMTDREDEADVILFNSCSIREQAEQKALGKMG 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---R 142 + + R ++ + GC+AQ++ EE+ + P +++VVG Q Y+R+ E ++ R Sbjct: 63 LLAKQQRHR----PHVVYGMMGCMAQSKKEELFKELPRLDLVVGTQKYHRVFEHVDGILR 118 Query: 143 ARFGKRV--VDTDYS------VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 AR +R+ + T +S V ++ + + + N TA+++I +GC+ C +C+ Sbjct: 119 ARQERRMDELQTAFSGTHVCDVAEEADSQNRIRDHLNPGVRSTAYVSIMQGCEMKCAYCI 178 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLY 252 VPYTRG E SR + VVDE + L D GV E+TLLGQ VN + G+ ++ G K F LL Sbjct: 179 VPYTRGAERSRPIRDVVDEVKMLADAGVKEVTLLGQIVNRY-GRQMETAGGKGGFVQLLE 237 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 ++ E++G+ R+R+ + HP L++A L L ++H P+QSGSDRILK M R + Sbjct: 238 AVHEVEGIRRIRFVSPHPIGFRQDLVQAFTYLPKLCSHIHFPMQSGSDRILKMMRRPYRN 297 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 Y + R++ RPD++I++D IVGFPGET++D+ T V+++ + AF F+YSPR G Sbjct: 298 ETYLDLCSRMKQARPDLSITTDIIVGFPGETEEDYLLTRQAVEQVQFDNAFIFRYSPRRG 357 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGR 431 TP + M Q+ E VK R L + E + N VG + EVL+E K +L GR Sbjct: 358 TPAAVMENQIPEEVKEARNQDLLAVVNEIAIRKNRDLVGTVQEVLLEGPSKTNAARLSGR 417 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 + + V++++ G+I+ +RI + TLYG Sbjct: 418 TSQNKPVMVDAAPDLAGEILPIRIEESTGFTLYG 451 >gi|86607496|ref|YP_476259.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus sp. JA-3-3Ab] gi|123504633|sp|Q2JQX6|MIAB_SYNJA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|86556038|gb|ABD00996.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. JA-3-3Ab] Length = 453 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 168/446 (37%), Positives = 257/446 (57%), Gaps = 18/446 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++ ++GCQMN DS RM + S GY ADL++ NTC IR+ A +KVYS+LG Sbjct: 6 YYTITFGCQMNRADSERMAGILESLGYVPAEDELQADLVLFNTCTIRDNAEQKVYSYLG- 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 ++ R ++ + ++VAGCVAQ EGE +LRR P +++V+GPQ RL +LL + G Sbjct: 65 ---IQAQRKRKNPAIKLIVAGCVAQQEGERLLRRVPELDLVMGPQYVNRLGDLLAQVEAG 121 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +VV T E + I + +R VTA++ + GC++ CT+C+VP RG E S Sbjct: 122 NQVVAT--------EPVEIPEDITKPRRDSRVTAWINVIYGCNERCTYCIVPLVRGREQS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + E + G E+TLLGQN++A+ G+ LD K + LL + ++G+ R+R Sbjct: 174 RQPQAIRAEIEDVARAGYREVTLLGQNIDAY-GRDLD-PKTNLASLLRFVHSVEGIERIR 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHPR ++ LI +L + + H+P Q+GSD +LK M R +T YRQ+I IR Sbjct: 232 FATSHPRYFTEELIATCAELPKVCEHFHIPFQAGSDAVLKRMRRGYTQERYRQLIQLIRQ 291 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+ IS+D IVGFPGET+ F+ T+ LV IG+ + YSPR GTP + +QV E Sbjct: 292 YMPEATISADAIVGFPGETEAQFQETLQLVQDIGFDFLNTAAYSPRPGTPAAEWPDQVPE 351 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSK 443 K++RL L + + E + + +GQ+ EVL+E + K + +GR+ + V + Sbjct: 352 EEKSDRLQRLNRLVAEVAAARSARLLGQVQEVLVEGPNPKNPRQAMGRTRGNRIVFFDGD 411 Query: 444 NHNI-GDIIKVRITDVKISTLYGELV 468 + G ++ VRIT + +L GE+V Sbjct: 412 PEQLQGSLVPVRITATRAFSLSGEIV 437 >gi|317131675|ref|YP_004090989.1| RNA modification enzyme, MiaB family [Ethanoligenens harbinense YUAN-3] gi|315469654|gb|ADU26258.1| RNA modification enzyme, MiaB family [Ethanoligenens harbinense YUAN-3] Length = 467 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 173/450 (38%), Positives = 255/450 (56%), Gaps = 25/450 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ +V++YGCQ NV DS ++ M GY +S DADL++ NTC +RE A ++V Sbjct: 27 APKKAYVRTYGCQQNVSDSEKLSGMLSEMGYVFTDSPKDADLVLFNTCAVREHAEQRVLG 86 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELL 140 +G ++ K + D+L+ + GC+ Q E+I + P V++V G R PELL Sbjct: 87 NVGALKGFKAKKP----DMLIALCGCMMQERHVSEKIKQSYPYVDLVFGTGALPRFPELL 142 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-TAFLTIQEGCDKFCTFCVVPYTR 199 RA + + V D E+ +V+G R+ G TA+L + GC+ FCT+C+VPY R Sbjct: 143 WRA------LTENGRVFDLEEQNGVVEGVPVRRDGAYTAWLPVMNGCNNFCTYCIVPYVR 196 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR+ QV+ EA +L+ GV ++TLLGQNVN++ GK L + F+ LL L+ + G Sbjct: 197 GREHSRAPEQVLREAEELLAAGVKDLTLLGQNVNSY-GKNLQND-WDFAKLLEKLAALPG 254 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 RL + TSHP+D S L + LHLP QSGSDRIL+ MNR +TA +YR+++ Sbjct: 255 EFRLHFMTSHPKDASHRLFDTIAANPKISRRLHLPFQSGSDRILRQMNRGYTAAQYRELV 314 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++ P + ++SD IVGFPGET +DF+ T+ LV+++G+A ++F YSPR GTP + M Sbjct: 315 AYAKAAIPGLCLTSDVIVGFPGETCEDFKQTLALVEEVGFANLYTFLYSPRKGTPAAEMP 374 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 + V KA E LL Q + +F ++ VG VL E E G G + Sbjct: 375 DPVAREEKARWFEELLAAQGV---KSRAFLESHVGMAGRVLAEN--VENGLAAGHTD--S 427 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 V ++ G +V T+VK TL GE Sbjct: 428 GVAVSFPAPAAGRFYEVSFTEVKGVTLLGE 457 >gi|306822499|ref|ZP_07455877.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium dentium ATCC 27679] gi|304554044|gb|EFM41953.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium dentium ATCC 27679] Length = 503 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 162/400 (40%), Positives = 245/400 (61%), Gaps = 23/400 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MD-DADLIVLNTCHIREKAAEKVYS 82 F+V + GCQMNV+DS R+ + S GY MD D DLIV+NTC +RE AAE++Y Sbjct: 50 FYVHTLGCQMNVHDSERIAGVLESAGYVPATEEQYMDHDVDLIVMNTCAVRENAAERMYG 109 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +K R +L + V GC+AQ + E I ++P V+ V G + LP+LL++ Sbjct: 110 TIGLWAEMKRER----PNLQIAVGGCMAQLDRERIAEKAPWVDAVFGTKNIGSLPQLLDQ 165 Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 AR G V + + +L +R V++++ I GC+ CTFC+VP TRG Sbjct: 166 ARVQGHAQVKVEEELNYFPSQLPT-----DRASRVSSWVAISVGCNNTCTFCIVPTTRGK 220 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E R ++ E R+ +D G EITLLGQNVN++ G G+ G++ FS LL + EI+GL Sbjct: 221 EHDRRPGDILAEIRQCVDEGAKEITLLGQNVNSF-GYGI-GDRFAFSKLLRACGEIEGLE 278 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + ++ I+ + Sbjct: 279 RVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRK 338 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR PD IS+D IVGFPGET++DF+ TM +V++ ++ AF+F YSPR GTP + M EQ Sbjct: 339 IREAMPDAQISTDIIVGFPGETEEDFQETMRVVEEARFSSAFTFIYSPRPGTPAAEM-EQ 397 Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 V +V + ERL+ LQ+++ E+ + + G+ +EV++ Sbjct: 398 VPHDVVQNRFERLVALQERITEENLKIFE---GRDVEVMV 434 >gi|256424882|ref|YP_003125535.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chitinophaga pinensis DSM 2588] gi|256039790|gb|ACU63334.1| RNA modification enzyme, MiaB family [Chitinophaga pinensis DSM 2588] Length = 473 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 168/445 (37%), Positives = 259/445 (58%), Gaps = 11/445 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F+++SYGCQMN DS + + +G+ ++++A L++LNTC IREKA V L Sbjct: 30 KKFYIESYGCQMNFNDSEIVASILKEEGFGPTRNVEEASLVLLNTCSIREKAETTVRKRL 89 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R +K + +LLV V GC+A+ ++L +V++VVGP Y LP L+E A Sbjct: 90 TEFRKIK----QRNPELLVGVLGCMAERLKAKLLEEEKLVDMVVGPDAYRTLPALIEEAE 145 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ V+ S E+ + +S V N GVTAF++I GC+ C+FCVVP+TRG E S Sbjct: 146 TGQKAVNVLLSREETYGDISPVRLDSN---GVTAFVSIMRGCNNMCSFCVVPFTRGRERS 202 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 R + ++ EA + + G E+TLLGQNV++ W D + TF++LL +++ I L+R Sbjct: 203 RDKASILQEATDMFNRGYREVTLLGQNVDSYYWVSPDNDNDITTFANLLEAVALISPLLR 262 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R++TSHP+D++D ++ + + Y+HLP+QSGS RIL+ MNR +T Y + +DRI Sbjct: 263 VRFSTSHPKDITDDVLYTMAKYENICKYIHLPMQSGSTRILQLMNRTYTREWYIKKVDRI 322 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 R + P A+S+D I GF ET++D + TM L+D Y A+ F YS R GT + + Sbjct: 323 REILPGCALSTDVITGFCTETEEDHQDTMTLMDYGQYDLAYMFFYSERPGTLAARRYQDD 382 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 V E VK RL + R Q + VG+ +VLIE K + +L GR+ + VV Sbjct: 383 VPEEVKKRRLSEIVDLHRAQSLKSMQQDVGKTFKVLIEGVSKRSEDQLFGRTDHNKVVVF 442 Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465 ++ G+ I V++ D TL G Sbjct: 443 PKEDFRKGEYIWVKVEDCTAGTLLG 467 >gi|198274122|ref|ZP_03206654.1| hypothetical protein BACPLE_00259 [Bacteroides plebeius DSM 17135] gi|198273200|gb|EDY97469.1| hypothetical protein BACPLE_00259 [Bacteroides plebeius DSM 17135] Length = 457 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 165/448 (36%), Positives = 264/448 (58%), Gaps = 21/448 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY +++++AD + +NTC IR+ A +K+ + L Sbjct: 19 KKLFIETYGCQMNVADSEVIASIMQMAGYSPCDTLEEADAVFMNTCSIRDNAEQKILNRL 78 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +L+ R +L+V V GC+A+ E++ + V++V GP Y LP+L+ Sbjct: 79 EFFHSLRKKR----KNLIVGVLGCMAERVKNELIEKHH-VDLVAGPDAYLTLPDLIAAVE 133 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FC +C+VPYTRG E Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCHYCIVPYTRGRE 188 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E R L G E+TLLGQNVN++R + DG+ TF LL ++E +R Sbjct: 189 RSRDVESILNEVRDLQRKGYKEVTLLGQNVNSYRFEK-DGQTVTFPMLLRIVAEAVPDMR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD + ++ + ++HLPVQSGS RILK MNR++T Y + + I Sbjct: 248 VRFTTSHPKDMSDETLHVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVAAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD +S+D GF ET++D + ++ L+ + Y AF FKYS R GT S L + Sbjct: 308 RRIIPDCGLSTDIFSGFHSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E +K RL + LQ +L + N VG+ EVL+E K K +L GR+ + Sbjct: 368 VPEEIKIRRLNEMIELQNQLSAES---NAKDVGKTFEVLVEGVSKRSKEQLFGRTEQNKV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYG 465 VV + +H IGD +KV+IT+ +TL G Sbjct: 425 VVFDRGSHRIGDFVKVKITESSSATLKG 452 >gi|261878931|ref|ZP_06005358.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella bergensis DSM 17361] gi|270334514|gb|EFA45300.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella bergensis DSM 17361] Length = 452 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 164/458 (35%), Positives = 271/458 (59%), Gaps = 22/458 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GYE ++ D+AD I LNTC IRE A K+Y L Sbjct: 3 KKLYIETYGCQMNVADSEVVASVMKMAGYELTDNEDEADAIFLNTCSIRENAENKIYHRL 62 Query: 85 GRIRNLKNSRIKEGGDL-----LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 + + R E + ++ V GC+A+ +++++ N+V GP Y LPE+ Sbjct: 63 DALHAEQRKRAVETQNPKCPTPILGVLGCMAERVKDDLVKNHH-ANLVCGPDAYLNLPEM 121 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + G+ VD S + + + G NR ++ F++I GC+ FC +C+VP+TR Sbjct: 122 IAAVEMGQEAVDVQLSTTETYRDIIPQRIGGNR---ISGFVSIMRGCNNFCHYCIVPFTR 178 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLS 255 G E SR + ++ E L D G E+TLLGQNVN++ G +G++ +F++LL ++ Sbjct: 179 GRERSRDVESILKEVHDLHDKGFKEVTLLGQNVNSY-GLLPNGKRPENGTSFAELLRLVA 237 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 +R+R+TTS+P DM++ +I+A D L ++H PVQSGS +ILK MNR++T +Y Sbjct: 238 REVPDMRVRFTTSNPEDMTEDIIQAVADEPNLCNHIHFPVQSGSSKILKLMNRKYTREDY 297 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + + IR + PD +++D VG+ ET++D + T+DL+ ++G+ AF FKYS R GT Sbjct: 298 LEKVAAIRRIIPDCGLTTDVFVGYHDETEEDHQMTLDLMREVGFDSAFMFKYSERPGTYA 357 Query: 376 SNML-EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVG 430 + L + V E VK R L+ LQ ++ +Q N G+ E+L+E+ K + +L+G Sbjct: 358 AKHLPDNVPEEVKVRRLNELIQLQTQISAEQ---NKKDEGKEFEILLERFSKRSRQQLMG 414 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 R+P ++V+++ H+IG+ +KVRIT +TL+GE + Sbjct: 415 RTPQNKAVLVDKGTHHIGETMKVRITGSSSATLFGEEI 452 >gi|309801462|ref|ZP_07695589.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium dentium JCVIHMP022] gi|308221977|gb|EFO78262.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium dentium JCVIHMP022] Length = 484 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 162/400 (40%), Positives = 245/400 (61%), Gaps = 23/400 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MD-DADLIVLNTCHIREKAAEKVYS 82 F+V + GCQMNV+DS R+ + S GY MD D DLIV+NTC +RE AAE++Y Sbjct: 31 FYVHTLGCQMNVHDSERIAGVLESAGYVPATEEQYMDHDVDLIVMNTCAVRENAAERMYG 90 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +K R +L + V GC+AQ + E I ++P V+ V G + LP+LL++ Sbjct: 91 TIGLWAEMKRER----PNLQIAVGGCMAQLDRERIAEKAPWVDAVFGTKNIGSLPQLLDQ 146 Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 AR G V + + +L +R V++++ I GC+ CTFC+VP TRG Sbjct: 147 ARVQGHAQVKVEEELNYFPSQLPT-----DRASRVSSWVAISVGCNNTCTFCIVPTTRGK 201 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E R ++ E R+ +D G EITLLGQNVN++ G G+ G++ FS LL + EI+GL Sbjct: 202 EHDRRPGDILAEIRQCVDEGAKEITLLGQNVNSF-GYGI-GDRFAFSKLLRACGEIEGLE 259 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + ++ I+ + Sbjct: 260 RVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRK 319 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR PD IS+D IVGFPGET++DF+ TM +V++ ++ AF+F YSPR GTP + M EQ Sbjct: 320 IREAMPDAQISTDIIVGFPGETEEDFQETMRVVEEARFSSAFTFIYSPRPGTPAAEM-EQ 378 Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 V +V + ERL+ LQ+++ E+ + + G+ +EV++ Sbjct: 379 VPHDVVQNRFERLVALQERITEENLKIFE---GRDVEVMV 415 >gi|326773675|ref|ZP_08232958.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces viscosus C505] gi|326636905|gb|EGE37808.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces viscosus C505] Length = 553 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 153/412 (37%), Positives = 247/412 (59%), Gaps = 26/412 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------------DLIVLNTC 70 +P+ + V++ GCQMNV+DS M + GY RV + +A D++++NTC Sbjct: 17 LPRTYHVRTLGCQMNVHDSEHMAGLLERAGYLRVEDVPEAASRATDAGDGGADVVIINTC 76 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130 +RE AA +++ LG++ +K R + + VAGC+AQ GE I+ R+P V+VV G Sbjct: 77 SVRENAATRLFGNLGQLAAVKRERPG----MQIAVAGCLAQQMGEGIVERAPWVDVVFGT 132 Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDK 188 LP LLERAR ++ +VE + E L + +R A+++I GC+ Sbjct: 133 HNLDVLPALLERARH-----NSAAAVELE-ESLKVFPSTLPTRRESSYAAWVSIAVGCNN 186 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248 CTFC+VP RG + R V+ E + G E+TLLGQNVN++ G G G++ F+ Sbjct: 187 TCTFCIVPSLRGKQRDRRPGDVLAEVEAVAAQGAIEVTLLGQNVNSY-GVGF-GDRGAFA 244 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 LL + ++G+ R+R+T+ HP +D +I+A + +MP LH+P+QSGSDR+L++M R Sbjct: 245 KLLRAAGSVEGIERVRFTSPHPAAFTDDVIEAMATTEAVMPSLHMPLQSGSDRVLRAMRR 304 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + + I+D++R+V P+ AI++D IVGFPGET++DF+AT+D+V++ +A A++F+YS Sbjct: 305 SYRTQRFLGILDKVRAVMPEAAITTDIIVGFPGETEEDFQATLDVVEQARFASAYTFEYS 364 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 PR GTP ++ +QV V +R L +R N+ G+++EVL+ + Sbjct: 365 PRPGTPAADRDDQVPTEVVKDRYRRLDALVRRIAHEENERQEGRVVEVLVAE 416 >gi|300780998|ref|ZP_07090852.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium genitalium ATCC 33030] gi|300532705|gb|EFK53766.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium genitalium ATCC 33030] Length = 520 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 161/453 (35%), Positives = 264/453 (58%), Gaps = 29/453 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ + V+++GCQMNV+DS R+ + GY DDADLIV NTC +RE A +++Y Sbjct: 15 PRTYEVRTFGCQMNVHDSERLSGLLEDAGYVAATD-DDADLIVFNTCAVRENADKRLYGT 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG +R+ K + + + V GC+AQ + + ++ ++P V+ V G LP LL+RA Sbjct: 74 LGALRDKK----RHHPGMQIAVGGCLAQKDRDTVVEKAPWVDAVFGTHNMSALPALLDRA 129 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R + + F S++ R+ ++++ GC+ CTFC+VP RG E Sbjct: 130 RVEEEAQVEVVESLEVFP--SVLPA--KRESSYAGWVSVSVGCNNTCTFCIVPSLRGKEQ 185 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKG 259 R ++ E + L+D GV E+TLLGQNVNA+ +D + + FS L + EI+G Sbjct: 186 DRRPGDILAEVQALVDQGVSEVTLLGQNVNAYGVNFVDPDMPRDRSAFSKLPRACGEIEG 245 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L RLR+T+ HP + + +I A + + P LH+P+QSGSD++LK M R + + ++ I+ Sbjct: 246 LERLRFTSPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDKVLKDMRRSYRSKKFLGIL 305 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 D +R+ P +I++D IVGFPGET++DF+AT+++V+K + A++F+YSPR GTP + M Sbjct: 306 DEVRAKLPHASITTDIIVGFPGETEEDFQATLNVVEKARFTSAYTFQYSPRPGTPAAEMD 365 Query: 380 EQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG------KLVG 430 QV + V + ERLL LQ+++ ++ N +G E+L+++ ++K +L G Sbjct: 366 GQVPKEVVQERFERLLALQERISYEE---NLKLIGTSQELLVQETNEKKADRAQSTRLSG 422 Query: 431 RSPWLQSVVLNSKNH----NIGDIIKVRITDVK 459 R+ + V ++ + GDI+ V ITD + Sbjct: 423 RARDGRLVHFDAGSLIDAVRPGDIVHVTITDAR 455 >gi|227495170|ref|ZP_03925486.1| possible tRNA 2-methylthioadenine synthetase [Actinomyces coleocanis DSM 15436] gi|226831622|gb|EEH64005.1| possible tRNA 2-methylthioadenine synthetase [Actinomyces coleocanis DSM 15436] Length = 485 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 160/408 (39%), Positives = 250/408 (61%), Gaps = 35/408 (8%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDA------------DLIVLNTCHIREKAAEKVYSF 83 MNV+DS RM + + GY V + +A D++V+NTC +RE AA +++ Sbjct: 1 MNVHDSERMAGLLAADGYVPVEQVPEAAARATEAGDGGADVVVINTCSVRENAANRLFGN 60 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG++ ++K +R D+ + V GC+AQ +I++++P V+VV G LP LL+RA Sbjct: 61 LGQLASVKKNR----PDMQIAVGGCLAQQMRADIVKKAPFVDVVFGTHNIDVLPVLLKRA 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R + D +VE + E L + +K A+++I GC+ CTFC+VP+ RG Sbjct: 117 RHNR-----DAAVEIE-ESLKVFPSTLPKKADSSYAAWVSISVGCNNTCTFCIVPHLRGK 170 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 E R +V+ E ++ G E+TLLGQNVN++ G+ GE+ F+ LL + I+GL Sbjct: 171 ERDRRPGEVLAEIEAVVSEGAVEVTLLGQNVNSY---GVSFGERDAFAKLLRAAGNIEGL 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR+T+ HP SD +I+A + +MP LH+P+QSGSDRIL+ M R + ++ I++ Sbjct: 228 ERLRFTSPHPAAFSDDVIRAMAETPTVMPSLHMPLQSGSDRILRMMRRSYRRAKFEGILE 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R + PD AI++D IVGFPGET++DF+ T+++V+K +A AF+F YSPR GTP ++M + Sbjct: 288 RVRELIPDAAITTDIIVGFPGETEEDFQQTLEVVEKARFASAFTFLYSPRPGTPAADMED 347 Query: 381 QVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE 424 QV ++V AE RLL LQ+K+ +++ G +EVLI E G++ Sbjct: 348 QVPDDVAAERYKRLLALQEKISFEEMQ---KLEGTTVEVLIAETEGRK 392 >gi|149198156|ref|ZP_01875203.1| hypothetical protein LNTAR_15882 [Lentisphaera araneosa HTCC2155] gi|149138758|gb|EDM27164.1| hypothetical protein LNTAR_15882 [Lentisphaera araneosa HTCC2155] Length = 452 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 163/454 (35%), Positives = 258/454 (56%), Gaps = 21/454 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +K+YGCQMN DS +E GYE DAD+I+LNTC +R++A K + Sbjct: 4 EKVLIKTYGCQMNDRDSEAVEMDLLKSGYEITTEEKDADVIILNTCSVRDQAERKALGKV 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G + L+ K L V V GC+AQ+ ++I+ ++ VN V G +++PEL+E+++ Sbjct: 64 GSLIKLRRKNPK----LQVGVIGCMAQSRADDIVEKNAHVNFVAGTDQLHKIPELIEKSK 119 Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + +++T S D ERL N G + A + I GC+++CT+C+VP+TRG E Sbjct: 120 DTEDALIETGLS-RDIMERLD------NHPEGQMNASVAIMRGCNEYCTYCIVPFTRGQE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGEKCTFSDLLYSLSE 256 SR+++ ++ E + L + GV EI LGQN+ A+ R + + E F+ LL ++ Sbjct: 173 KSRTIASIIAEVKALSEKGVREIMYLGQNITAYGLIEARRDRTFNKEVSPFAALLRETAK 232 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I+G+ R+R+T+ H R +D LI + +H P+QSGS+R+LK M RRHTA E+ Sbjct: 233 IEGIKRIRFTSPHARYFNDDLIDTIAAEPKICRAIHFPLQSGSNRLLKVMRRRHTAEEFL 292 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 I++++ I ++D IVGFPGET++DF+AT D+ ++I + Q F F+YS R TP + Sbjct: 293 SWINKMKERIDGITFTTDLIVGFPGETEEDFKATRDMCNEIDFDQQFIFRYSTRKNTPAA 352 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWL 435 M Q+DE K ER L K L E+ N+ VG I E+++E K K GR+ Sbjct: 353 QMPNQLDEETKIERNQILLKDLEERLTHKNEQRVGTIEEIMVEGVSKRNDDKWTGRTTNY 412 Query: 436 QSVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + V+ + + +GD+I ++I LYG V Sbjct: 413 KIVIFDPQEDVKVGDLINIKIERATQHALYGSYV 446 >gi|257462249|ref|ZP_05626666.1| MIAB protein [Fusobacterium sp. D12] gi|317059918|ref|ZP_07924403.1| adenosine tRNA methylthiotransferase [Fusobacterium sp. D12] gi|313685594|gb|EFS22429.1| adenosine tRNA methylthiotransferase [Fusobacterium sp. D12] Length = 435 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 171/447 (38%), Positives = 263/447 (58%), Gaps = 24/447 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V +YGCQMNV +S +M+ +F + GYE ++ ++D I LNTC +RE AA ++Y LG + Sbjct: 6 VITYGCQMNVNESAKMKKIFENLGYEITENIRESDAIFLNTCTVREGAATQIYGKLGELM 65 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFG 146 +K R ++ V GC AQ +G+E+L++ P++++V+G Q RLP+ +E + Sbjct: 66 QIKAKR-----GSIIGVTGCFAQEQGKELLKKFPVIDIVMGNQNIGRLPQAIENIENQTE 120 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K VV TD+ ED D G ++ TA + I GC+ FCTFC+VPY RG E S Sbjct: 121 KHVVFTDH--EDDLPPRLDADFGSDQ----TASIAISYGCNNFCTFCIVPYVRGRERSVP 174 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++V + + + G EI LLGQNVN++ +G+ TF+ LL + ++ G +R+ Sbjct: 175 LEEIVRDVEQYVKKGAKEIMLLGQNVNSYGHDFKNGD--TFARLLTEICKVDGDFIVRFV 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + HPRD +D +I + + LHLP+QSGS +ILK MNR +T +Y + +I++ Sbjct: 233 SPHPRDFTDDVIDVIAKEEKIAKCLHLPLQSGSSQILKRMNRGYTKEQYLSLAHKIQNRI 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P +A+++D IVGFPGET+ DF T+++V +I Y AF F YS R GT + M EQV E+ Sbjct: 293 PGVALTTDIIVGFPGETEQDFLDTLEVVREINYDNAFMFMYSIRQGTRAATMQEQVPEDT 352 Query: 387 KAERLLCLQKKLREQQV--SFNDA--CVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441 K ERL +KL + Q S+ ++ G+++ VL+E K+ K L GR+ + V+ Sbjct: 353 KKERL----QKLMDVQARCSYKESQKYQGKVVRVLVEGESKKNKQVLSGRTSTNKIVLFQ 408 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + G + V I + K TLYG+LV Sbjct: 409 APISLKGSFVDVEIYECKTWTLYGKLV 435 >gi|296129399|ref|YP_003636649.1| RNA modification enzyme, MiaB family [Cellulomonas flavigena DSM 20109] gi|296021214|gb|ADG74450.1| RNA modification enzyme, MiaB family [Cellulomonas flavigena DSM 20109] Length = 538 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 163/419 (38%), Positives = 253/419 (60%), Gaps = 27/419 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL----IVLNTCHIREKAAEKVYS 82 + VK+ GCQMNV+DS M M GY + D A +V+NTC +RE AA+K+Y Sbjct: 31 YHVKTLGCQMNVHDSEHMAGMLEQAGYVPADPADAAADDVDVLVINTCAVRENAADKLYG 90 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LGR+ K SR G + + V GC+AQ + I+ R+P V+VV G LP LLER Sbjct: 91 NLGRLAGTKRSR---AGGMQIAVGGCLAQKDRAGIVERAPWVDVVFGTHNLDVLPTLLER 147 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTA-FLTIQEGCDKFCTFCVVPYTRG 200 AR V+ + S++ L R+ V A +++I GC+ CTFC+VP+ RG Sbjct: 148 ARHNAAAQVEIEESLKVFPSTLP------TRRESVYAGWVSISVGCNNTCTFCIVPHLRG 201 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E R V+ E L+ G E+TLLGQNVN++ G G G++ F LL ++ + GL Sbjct: 202 KERDRRPGDVLAEVEALVATGAIEVTLLGQNVNSY-GVGF-GDRHAFGKLLRAVGAVPGL 259 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP +D +I+A +MP LH+P+QSGSDR+L++M R + A + I++ Sbjct: 260 ERVRFTSPHPAAFTDDVIEAMAATPTVMPQLHMPLQSGSDRVLRAMRRSYRADRFLGILE 319 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R+ P AI++D IVGFPGET++DFR T+ +V+ ++ AF+F+YSPR GTP +++ + Sbjct: 320 RVRAAIPHAAITTDVIVGFPGETEEDFRETLRVVEASRFSSAFTFQYSPRPGTPAADLPD 379 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKG---KLVGRS 432 Q+ + V + ERL+ LQ+++ ++ N A VG+ ++VL+ + G++ G ++ GR+ Sbjct: 380 QLPKAVVQERYERLVALQERISAEE---NAAQVGRTVDVLVAQGEGRKDGATARISGRA 435 >gi|255994069|ref|ZP_05427204.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC 49989] gi|255993737|gb|EEU03826.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC 49989] Length = 440 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 174/444 (39%), Positives = 258/444 (58%), Gaps = 18/444 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++ + ++GCQMN DS + + S G S+++AD++V+NTC IRE A K Y LG Sbjct: 8 KYNIITFGCQMNERDSESIAGILKSHGLTSA-SIEEADIVVINTCSIRENANNKFYGTLG 66 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGE---EILRRSPIVNVVVGPQTYYRLPELLER 142 ++N+K K G DL+V V GC+ Q EGE ++ R P V+V+ G R+ +L+ Sbjct: 67 IVKNIKKKLKKNGDDLVVCVCGCMMQ-EGEVVEDLKARFPFVDVIFGTHNIDRVYDLI-- 123 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + ++T + E I + +R AF+ I GC+ FCT+C+VPYTRG E Sbjct: 124 ----IKTIETKRREIEILENAEIKEMPVDRVNKHKAFVNITFGCNNFCTYCIVPYTRGRE 179 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SRSL +++ E + G E+T LGQNVN++RG+ +GE F D+L S+I+GL R Sbjct: 180 KSRSLDKILGETADAVSLGAKEVTFLGQNVNSYRGE--NGE--NFRDVLVEASKIQGLER 235 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHP+D++D LI LD +MP++HLPVQSGS ILK MNR + Y +IID+I Sbjct: 236 IRFMTSHPKDLTDELIDVMS-LDKIMPHIHLPVQSGSSEILKRMNRHYDRERYLEIIDKI 294 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 S+ DIAI++D IVGFP ET++DF T+DLV + + AF+F YS R T +N QV Sbjct: 295 YSLNEDIAITTDIIVGFPTETEEDFSKTLDLVRRARFDAAFTFMYSKRRNTKAANFDGQV 354 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 D R L + L++ N +G+ I+V+++K + + GRSP + V Sbjct: 355 DRVEMGRRFDMLSELLKDISFEKNKKFIGRRIKVMVDKIEGDNAE--GRSPEFKLVKFYG 412 Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466 KN GDI+ V + +L G+ Sbjct: 413 KNIKKGDILDVVVDRASPFSLSGK 436 >gi|78212394|ref|YP_381173.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. CC9605] gi|123743350|sp|Q3ALB4|MIAB_SYNSC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|78196853|gb|ABB34618.1| Protein of unknown function UPF0004 [Synechococcus sp. CC9605] Length = 464 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 178/463 (38%), Positives = 270/463 (58%), Gaps = 27/463 (5%) Query: 18 VDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 D PQR +++ ++GCQMN DS RM + + GY ++ DADL++ NTC IR+ Sbjct: 9 TDATANPQRGSYWITTFGCQMNKADSERMAGILEAMGYREASAELDADLVLYNTCTIRDN 68 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A +KVYS+LGR + R + +L++VVAGCVAQ EGE +LRR P +++V+GPQ R Sbjct: 69 AEQKVYSYLGR----QAQRKRSNPNLILVVAGCVAQQEGESLLRRVPELDLVMGPQHANR 124 Query: 136 LPELLERARFGKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 L LL + G++VV T D+ + E ++ R + ++ + GC++ CT+CV Sbjct: 125 LETLLLQVDSGQQVVATEDHHI---LEDITTA----RRDSSICGWVNVIYGCNERCTYCV 177 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFS 248 VP RG E SR + E L G EITLLGQN++A+ G+ L G + T + Sbjct: 178 VPSVRGKEQSRLPQAIKLEMEGLAAQGYKEITLLGQNIDAY-GRDLPGITPEGRRQHTLT 236 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 DLL+ + +++G+ R+R+ TSHPR ++ LI A DL L + H+P QSG + +L++M R Sbjct: 237 DLLHHVHDVEGIERIRFATSHPRYFTERLIDACADLPKLCEHFHIPFQSGDNDVLQAMAR 296 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 +T YR+IIDRIR PD ++S+D IV FPGETD +R T+DL+++IG+ Q + YS Sbjct: 297 GYTVERYRRIIDRIRERMPDASLSADVIVAFPGETDAQYRRTLDLIEEIGFDQVNTAAYS 356 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGK 427 PR TP +N Q+ E VK ERL + + N G+ EVL E + K+ + Sbjct: 357 PRPNTPAANWDNQLPEEVKVERLREINALVERCARKANARYEGRTEEVLAEGINPKDPSQ 416 Query: 428 LVGRS-----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 L+GR+ + + + + GD+++VRI V+ +L G Sbjct: 417 LMGRTRTNRLTFFSATGADGHANKAGDLVQVRIDAVRSFSLSG 459 >gi|260435870|ref|ZP_05789840.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. WH 8109] gi|260413744|gb|EEX07040.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. WH 8109] Length = 464 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 178/463 (38%), Positives = 269/463 (58%), Gaps = 27/463 (5%) Query: 18 VDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 D PQR +++ ++GCQMN DS RM + + GY ++ DADL++ NTC IR+ Sbjct: 9 TDATANPQRGSYWITTFGCQMNKADSERMAGILEAMGYREASAELDADLVLYNTCTIRDN 68 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A +KVYS+LGR + R + +L +VVAGCVAQ EGE +LRR P +++V+GPQ R Sbjct: 69 AEQKVYSYLGR----QAQRKRSNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANR 124 Query: 136 LPELLERARFGKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 L LL + G++VV T D+ + E ++ R + ++ + GC++ CT+CV Sbjct: 125 LETLLLQVDSGQQVVATEDHHI---LEDITTA----RRDSSICGWVNVIYGCNERCTYCV 177 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFS 248 VP RG E SR + E L G EITLLGQN++A+ G+ L G + T + Sbjct: 178 VPSVRGKEQSRLPEAIKLEMEGLAAQGYKEITLLGQNIDAY-GRDLPGITPEGRRQHTLT 236 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 DLL+ + +++G+ R+R+ TSHPR ++ LI A DL L + H+P QSG + +L++M R Sbjct: 237 DLLHHVHDVEGIERIRFATSHPRYFTERLIDACADLPKLCEHFHIPFQSGDNDVLQAMAR 296 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 +T YR+IIDRIR PD ++S+D IV FPGETD +R T+ L+++IG+ Q + YS Sbjct: 297 GYTVERYRRIIDRIRERMPDASLSADVIVAFPGETDAQYRRTLHLIEEIGFDQVNTAAYS 356 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGK 427 PR TP +N Q+ E VK ERL + + N G+ EVL E + K + Sbjct: 357 PRPNTPAANWENQLPEEVKVERLREINALVERCARKANTRYEGRTEEVLAEGINPKAPSQ 416 Query: 428 LVGRS-----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 L+GR+ + S + + + GD+++VRI +V+ +L G Sbjct: 417 LMGRTRTNRLTFFSSTGADGRAYKAGDLVEVRIDEVRSFSLSG 459 >gi|254495105|ref|ZP_05108029.1| tRNA-i(6)A37 modification enzyme MiaB [Polaribacter sp. MED152] gi|85819455|gb|EAQ40612.1| tRNA-i(6)A37 modification enzyme MiaB [Polaribacter sp. MED152] Length = 484 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 179/467 (38%), Positives = 266/467 (56%), Gaps = 38/467 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGCQMN+ DS + + +GY +++ADL+++NTC IREKA V L Sbjct: 27 KKLFIESYGCQMNMNDSEIVAAILDKEGYNTTQILEEADLVLVNTCSIREKAETTVRRRL 86 Query: 85 GRIRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + +K N ++K G V GC+A+ E+ L IV++VVGP Y LP LLE Sbjct: 87 QKYNAVKQVNKKMKVG------VLGCMAERLKEKFLEEEKIVDLVVGPDAYKDLPNLLEE 140 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ V+ S E+ + +S V N GV+AF++I GCD CTFCVVP+TRG E Sbjct: 141 VYEGRDAVNVILSKEETYGDISPVRLNSN---GVSAFVSITRGCDNMCTFCVVPFTRGRE 197 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSD 249 SR +++E ++++D EITLLGQNV++ W G GL D +K + F+ Sbjct: 198 RSRDPKSILEEIQQMVDKNYKEITLLGQNVDSFLWYGGGLKKDFKKASEMAQATAVDFAQ 257 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL + R R++TS+P+DMS +I + Y+HLPVQSGS+ +LK+MNR+ Sbjct: 258 LLDMCATQFPKTRFRFSTSNPQDMSLDVIHVMAKHRNICKYIHLPVQSGSNAMLKAMNRQ 317 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 HT EY +++D I + P++A+S D IVGF GET+ D + T+DL++ + Y F F YS Sbjct: 318 HTREEYMELVDNIFKIVPEMALSQDMIVGFCGETEQDHQDTLDLMEYVKYDFGFMFAYSE 377 Query: 370 RLGT-PGSNMLEQVDENVKAERL---LCLQKK---LREQQVSFNDACVGQIIEVLIEKHG 422 R GT G M + V E VK RL + LQ+K R QQ +G++ EVLIE Sbjct: 378 RPGTLAGKKMEDDVPEAVKKRRLTEVIDLQQKHALYRTQQ------HLGKVEEVLIEGTS 431 Query: 423 KEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 K+ + GR+ +V +++ +GD + V++ D +TL G V Sbjct: 432 KKNPNEWKGRNTQNTVIVFPKEHYKLGDFVNVKVEDCTSATLKGTAV 478 >gi|145219118|ref|YP_001129827.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prosthecochloris vibrioformis DSM 265] gi|229890605|sp|A4SCW6|MIAB_PROVI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|145205282|gb|ABP36325.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chlorobium phaeovibrioides DSM 265] Length = 448 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 164/445 (36%), Positives = 252/445 (56%), Gaps = 22/445 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F++ ++GCQMN DS + + G+ S +DAD+++LNTC +RE A E++ L Sbjct: 9 FYIHTFGCQMNQADSAIITAILMDGGFRVAGSQEDADIVILNTCAVRENAVERITHQLQF 68 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R K + LLV VAGCV Q E+L P+++ + GP TY LP L+ A G Sbjct: 69 LRGAKRRK----KSLLVGVAGCVPQHLKREMLEMFPVIDFLAGPDTYRNLPALIGDAEEG 124 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 KR ++ +E+ + + + R+ GV AF+ + GC+ C FCVVP+TRG E S+ Sbjct: 125 KRPAALEFRIEETYAGIDPL-----REVGVGAFVPVTRGCNNMCAFCVVPFTRGRERSQP 179 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 S V+DE R++++ G EITLLGQNVN++ E F+ LL ++S R+R+T Sbjct: 180 FSAVMDEVRRVVEKGYGEITLLGQNVNSYADPE---EGRDFASLLRAVSREAPGCRIRFT 236 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHP+D+S L+ A D + ++HLPVQSGS R+L MNR H EY + + +R Sbjct: 237 TSHPKDISPDLVDAIADSPNICNHVHLPVQSGSSRMLHRMNRGHGIDEYLETVALLRRRI 296 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDEN 385 P +++++D I GF GE D+D AT+ L+ ++ Y AF F YSPR GT L + V Sbjct: 297 PGVSLTTDLIAGFCGEEDEDHEATLALLREVRYDNAFMFYYSPRFGTAAWKTLADTVPLA 356 Query: 386 VKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440 VK +RL +++ + Q+S + C VG +++VL E + +L+GR+ ++VV Sbjct: 357 VKKQRL----QEIIDLQLSISAECLQEAVGSVVDVLAESESRRSTEQLMGRTGTNRAVVF 412 Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465 + GD + V I+ +TL G Sbjct: 413 DRGGARPGDRVSVLISKASSATLTG 437 >gi|315651392|ref|ZP_07904417.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saburreum DSM 3986] gi|315486351|gb|EFU76708.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saburreum DSM 3986] Length = 485 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 164/437 (37%), Positives = 260/437 (59%), Gaps = 15/437 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V ++GCQMN DS ++ + GY S +DADL++ NTC +RE A +++Y GR Sbjct: 47 YKVVTFGCQMNARDSEKLSGILSGIGYTEAKSEEDADLVLFNTCTVRENANDRLY---GR 103 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143 + LK S+ K D+++ + GC+ Q E E+I + V++V G Y+L E+L + Sbjct: 104 VGQLKKSKEK-NPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFGTHNIYKLAEILFDHL 162 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + K++VD S + E+L R+ + + I GC+ FC++C+VPY RG E Sbjct: 163 KTKKQIVDVMESADMIVEKLP-----NKRQYAFKSGVNITFGCNNFCSYCIVPYVRGKER 217 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ DE + L+ +GV E+ LLGQNVN++ GKGLD EK F+ LL +++I GL RL Sbjct: 218 SRKPEEITDEIKGLVADGVKEVMLLGQNVNSY-GKGLD-EKTNFAMLLDEVAKIDGLERL 275 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ T HP+D+SD +I+ + + +LHLP+QSGS ILK MNR +T Y ++ RI+ Sbjct: 276 RFMTPHPKDLSDEVIEVMKNNKKICKHLHLPLQSGSSAILKKMNRVYTKESYLDLVKRIK 335 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PDI++++D IVGFPGET++DF T+D+V ++ Y AF+F YS R GTP + M EQ+D Sbjct: 336 AAIPDISLTTDIIVGFPGETEEDFLDTLDVVKQVRYDSAFTFIYSKRSGTPAAKMEEQID 395 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442 ++ +R L K +++ G+ + VL+E + + +G L G+ +V Sbjct: 396 PDIIKDRFDRLLKTVQDIAAENTKKNEGKCMPVLVENNDEHLEGYLTGKLENNLTVHFKG 455 Query: 443 KNHNIGDIIKVRITDVK 459 IG+I+ V + + K Sbjct: 456 GKRLIGEIVDVVLDEAK 472 >gi|239617912|ref|YP_002941234.1| RNA modification enzyme, MiaB family [Kosmotoga olearia TBF 19.5.1] gi|239506743|gb|ACR80230.1| RNA modification enzyme, MiaB family [Kosmotoga olearia TBF 19.5.1] Length = 440 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 172/445 (38%), Positives = 268/445 (60%), Gaps = 24/445 (5%) Query: 30 KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 +++GCQMNV D+ M + S GY V++ ++AD++++NTC +REKA +K+Y LGR+R+ Sbjct: 6 RTFGCQMNVNDTETMAGILKSNGYVIVDNEEEADVVIVNTCAVREKAEKKLYGKLGRLRS 65 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 LK K+ +L++ V+GCVA+ E E +L+R VN V G ++ R+ E LERA G+R Sbjct: 66 LK----KKNRNLIIGVSGCVAEKEKEALLKREE-VNFVFGTRSISRVNEFLERAIKGERF 120 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 V+ +++ ++ R R A++TI GC+KFC++C+VPYTRG E SRS+ Sbjct: 121 VELSDFIDE-------INSSTPRLRTSRHHAWVTIIYGCNKFCSYCIVPYTRGREKSRSM 173 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +++E ++L G E+T LGQNV+++ GK L + T + L+ +I+ + R+ Y T Sbjct: 174 EDILNEVKRLASKGYREVTYLGQNVDSY-GKDL-ADGSTLAKLIRETLKIEQIERIWYLT 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 S+P+D SD LI + +HLP+QSGS+RILK+MNR +T EY +I RIR+ P Sbjct: 232 SYPKDFSDELIDVIATSKRVSRSIHLPIQSGSNRILKAMNRGYTREEYLDLIRRIRTKVP 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENV 386 D +IS+D IVGFPGE++DD+ T L++++ + + YSPR GT + M + V + Sbjct: 292 DASISTDIIVGFPGESEDDYLQTKSLLEEVIFERVNLAIYSPREGTISAKYMKDDVPHEI 351 Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 K R LL LQK L + N +G+ +E+++E K+ G L GR+ + V + Sbjct: 352 KVRRLQELLELQKCLNRK---INSEYIGKTVEIIVEAKHKD-GMLYGRTINNKIVFFHGS 407 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 IG K+ I LYG+LV Sbjct: 408 EELIGSKAKITIEKTTAGPLYGQLV 432 >gi|213416623|ref|ZP_03349767.1| hypothetical protein Salmonentericaenterica_01023 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 297 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 146/305 (47%), Positives = 206/305 (67%), Gaps = 13/305 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG TF+DLL ++ I G+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGID 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II + Sbjct: 233 RIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRK 292 Query: 322 IRSVR 326 +R+ R Sbjct: 293 LRAAR 297 >gi|325068449|ref|ZP_08127122.1| RNA modification enzyme, MiaB family protein [Actinomyces oris K20] Length = 417 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 153/412 (37%), Positives = 246/412 (59%), Gaps = 26/412 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------------DLIVLNTC 70 +P+ + V++ GCQMNV+DS M + GY RV + +A D++++NTC Sbjct: 17 LPRTYHVRTLGCQMNVHDSEHMAGLLERAGYLRVEDVPEAAARATDAGDGGADVVIINTC 76 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130 +RE AA +++ LG++ +K R + + VAGC+AQ GE I+ R+P V+VV G Sbjct: 77 SVRENAATRLFGNLGQLAAVKRERPG----MQIAVAGCLAQQMGEGIVERAPWVDVVFGT 132 Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDK 188 LP LLERAR ++ +VE + E L + +R A+++I GC+ Sbjct: 133 HNLDVLPALLERARH-----NSAAAVELE-ESLKVFPSTLPTRRESSYAAWVSIAVGCNN 186 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248 CTFC+VP RG + R V+ E + G E+TLLGQNVN++ G G G++ F+ Sbjct: 187 TCTFCIVPSLRGKQRDRRPGDVLAEVEAVAAQGAIEVTLLGQNVNSY-GVGF-GDRGAFA 244 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 LL + ++G+ R+R+T+ HP +D +I+A + +MP LH+P+QSGSDR+L++M R Sbjct: 245 KLLRAAGSVEGIERVRFTSPHPAAFTDDVIEAMATTEAVMPSLHMPLQSGSDRVLRAMRR 304 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + + I+D++R V P+ AI++D IVGFPGET++DF+AT+D+V++ +A A++F+YS Sbjct: 305 SYRTQRFLGILDKVRDVMPEAAITTDIIVGFPGETEEDFQATLDVVEQARFASAYTFEYS 364 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 PR GTP ++ +QV V +R L +R N+ G+++EVL+ + Sbjct: 365 PRPGTPAADRDDQVPTEVVKDRYRRLDALVRRIAHEENERQEGRVVEVLVAE 416 >gi|319952447|ref|YP_004163714.1| tRNA-i(6)a37 thiotransferase enzyme miab [Cellulophaga algicola DSM 14237] gi|319421107|gb|ADV48216.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cellulophaga algicola DSM 14237] Length = 480 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 173/459 (37%), Positives = 261/459 (56%), Gaps = 22/459 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGC MN DS + + +G+ +++ADL+++NTC IREKA V L Sbjct: 24 RKLYIESYGCAMNFSDSEVVASILAKEGFNTTQILEEADLVLVNTCSIREKAELTVRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K +R + V V GC+A+ + L IV++VVGP Y LP L++ Sbjct: 84 EKFNAVKKTR----PHMKVGVLGCMAERLKSKFLEEEKIVDMVVGPDAYKDLPNLIKEID 139 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V+ S ++ + +S V N GV+AF++I GCD CTFCVVP+TRG E S Sbjct: 140 EGRDAVNVILSKDETYGDISPVRLQTN---GVSAFVSITRGCDNMCTFCVVPFTRGRERS 196 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEKCT---FSDLL 251 R ++ E + L D+ E+TLLGQNV++ W G GL D +K T FS LL Sbjct: 197 REPQSILKEIQDLHDSNFKEVTLLGQNVDSYLWYGGGLKKEFEKATDMQKATAVNFSSLL 256 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++++ +R+R++TS+P+DM+ +I+ + ++HLPVQSGS+RILK MNR HT Sbjct: 257 DTVAKKFPKMRIRFSTSNPQDMTLDVIETVAKHKNICNHIHLPVQSGSNRILKEMNRLHT 316 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY +ID IR + PD AIS D I GFP ET++D +AT+D++ ++ Y + + YS R Sbjct: 317 IEEYITLIDNIRRILPDCAISQDMISGFPTETEEDHQATIDVLKRVQYDFGYMYSYSERP 376 Query: 372 GTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429 GT + LE V E K RL + RE +G+ EVLIE K+ + + Sbjct: 377 GTMAARKLEDDVPEETKKRRLAEIIAVQRENGHIKTREHLGKTEEVLIEGSSKKSDQDWM 436 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 GR+ V+ N+ IGD++ V+ITD +TL GE + Sbjct: 437 GRNSQNAVVIFAKGNYKIGDLVHVKITDCTSATLLGEAI 475 >gi|88809161|ref|ZP_01124670.1| hypothetical protein WH7805_05696 [Synechococcus sp. WH 7805] gi|88787103|gb|EAR18261.1| hypothetical protein WH7805_05696 [Synechococcus sp. WH 7805] Length = 497 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 178/460 (38%), Positives = 268/460 (58%), Gaps = 27/460 (5%) Query: 22 IVPQR----FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 ++P R +++ ++GCQMN DS RM + S GY + DADL++ NTC IR+ A Sbjct: 44 MLPNRERGSYWITTFGCQMNKADSERMAGILESMGYREASGELDADLVLYNTCTIRDNAE 103 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 +KVYS+LGR + R + +L +VVAGCVAQ EGE +LRR P +++V+GPQ RL Sbjct: 104 QKVYSYLGR----QAQRKRTNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLE 159 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 LL++ G++VV T+ E ++ R + ++ + GC++ CT+CVVP Sbjct: 160 TLLQQVDSGQQVVATEE--HHILEDITTA----RRDSSICGWVNVIYGCNERCTYCVVPS 213 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLL 251 RG E SR + E L G EITLLGQN++A+ G+ L G + T +DLL Sbjct: 214 VRGKEQSRLPDAIRLEMEGLAAQGFKEITLLGQNIDAY-GRDLPGITPEGRRQHTLTDLL 272 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 + + ++GL R+R+ TSHPR ++ LI A DL L + H+P QSG + +L++M R +T Sbjct: 273 HHVHSVEGLERIRFATSHPRYFTERLIDACADLPKLCEHFHIPFQSGDNDVLRAMARGYT 332 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 YR+IIDRIR PD ++S+D IV FPGETD +R T+ L+++IG+ Q + YSPR Sbjct: 333 VERYRRIIDRIRDRMPDASLSADVIVAFPGETDAQYRRTLALIEEIGFDQVNTAAYSPRP 392 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVG 430 TP +N Q+ E+ K ERL + + N+ G++ EVL E + K+ +L+G Sbjct: 393 NTPAANWDNQLSEDTKVERLREINALVERCARERNERYSGRVEEVLAEGINPKDPSQLMG 452 Query: 431 RSPWLQSVVLNSKNHN-----IGDIIKVRITDVKISTLYG 465 R+ + S+N N GD+++VRI V+ +L G Sbjct: 453 RTRTNRLTFFRSENGNGRRFSAGDLVQVRIDAVRSFSLSG 492 >gi|237785694|ref|YP_002906399.1| 2-methylthioadenine synthetase [Corynebacterium kroppenstedtii DSM 44385] gi|237758606|gb|ACR17856.1| 2-methylthioadenine synthetase [Corynebacterium kroppenstedtii DSM 44385] Length = 509 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 149/408 (36%), Positives = 245/408 (60%), Gaps = 22/408 (5%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNV+DS R+ + GY V S D AD++V NTC +RE A ++Y LG+++++K+++ Sbjct: 1 MNVHDSERLAGLLEEAGYVPVGSDDPADVVVFNTCAVRENADNRLYGTLGQLKSVKDAK- 59 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 D+ + V GC+AQ + + +++R+P V+VV G +LP LL RA + Sbjct: 60 ---PDMQIAVGGCMAQKDKDVVVKRAPWVDVVFGTHNIGKLPTLLARAAHNH---EAQVE 113 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 + D E+ V R + ++++ GC+ CTFC+VP RG E R ++ E + Sbjct: 114 IADALEQFPSVLPA-KRDSAYSGWVSVSVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQ 172 Query: 216 KLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271 L+D+GV E+TLLGQNVNA+ L+ ++ FS LL + +I+GL R+R+T+ HP Sbjct: 173 TLVDDGVSEVTLLGQNVNAYGVHFEDPTLERDRSAFSKLLRACGDIEGLERVRFTSPHPA 232 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 + + +I A + + P LH+P+QSGSD++LK M R + + +I+D +R P +I Sbjct: 233 EFTSDVIDAMAETHNVCPQLHMPLQSGSDKVLKEMRRSYRTKRFMRILDEVREKLPQASI 292 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KA 388 ++D IVGFPGET++DF+ T+DLV+K + A++F+YSPR GTP + M +QV + V + Sbjct: 293 TTDIIVGFPGETEEDFQQTLDLVEKARFTSAYTFQYSPRPGTPAAAMEDQVPKAVVQDRY 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432 ERL+ LQ+++ + N VG ++EVL++ + + +L GR+ Sbjct: 353 ERLVELQERISAE---LNAEMVGDVVEVLVQADDGRRSAQTHRLSGRT 397 >gi|325954192|ref|YP_004237852.1| (dimethylallyl)adenosine tRNA methylthiotransferase miaB [Weeksella virosa DSM 16922] gi|323436810|gb|ADX67274.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Weeksella virosa DSM 16922] Length = 482 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 169/462 (36%), Positives = 266/462 (57%), Gaps = 29/462 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGCQMN DS + + +GY+ N +++ADLI+LNTC IR+KA + V + L Sbjct: 27 KKLFLESYGCQMNFSDSEIVASILTEEGYQTTNQVNEADLILLNTCSIRDKAEQTVRNRL 86 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K K+ L + V GC+A+ + L +V++VVGP Y LP LL Sbjct: 87 NALNAIK----KQNPSLKIGVLGCMAERLKHKFLEEEHLVDIVVGPDAYRDLPNLLTEVE 142 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ ++ S E+ + +S + G N GVTAF+TI GCD CTFCVVP+TRG E S Sbjct: 143 DGRDAINVQLSKEETYAEISPIRLGGN---GVTAFVTITRGCDNMCTFCVVPFTRGRERS 199 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKG--------LDGEKCT---FSDLL 251 R ++ E ++L + G E+TLLGQNV++ W G G + +K T F+ LL Sbjct: 200 RDPHSILREIQELHEAGYKEVTLLGQNVDSYLWYGGGPKKDFKNATEIQKATAVDFAQLL 259 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++ +R+R++TS+P+DM D +++ + Y+HLPVQSGS +L+ MNR+HT Sbjct: 260 DMVAMQFPSIRIRFSTSNPQDMKDNVLETMAKHHNICKYIHLPVQSGSTTVLERMNRQHT 319 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 +Y ++ID+IR + PD A+S D I GF GET+++ + T+ L++ + Y + F YS R Sbjct: 320 REQYFELIDKIRKIIPDCALSHDMIAGFCGETEEEHQDTLSLMEYVKYDFGYMFAYSDRP 379 Query: 372 GTPG-SNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKG 426 GTP M + V K RL + LQ++ +++ A VG+ EVLIE + K++ Sbjct: 380 GTPAHKKMADDVPAETKKRRLQEIISLQQQHSAERMK---AYVGKTHEVLIEGNSKKDEN 436 Query: 427 KLVGRSPWLQSVVLNS-KNHNIGDIIKVRITDVKISTLYGEL 467 GR+ +V + ++GD ++V + D +TL GE+ Sbjct: 437 YWFGRNTQNAVIVFPKIEGTSVGDFVQVYVHDCTTATLLGEM 478 >gi|288800434|ref|ZP_06405892.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon 299 str. F0039] gi|288332647|gb|EFC71127.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella sp. oral taxon 299 str. F0039] Length = 441 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 160/452 (35%), Positives = 263/452 (58%), Gaps = 21/452 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GYE ++ +AD I +NTC +RE A K+Y+ L Sbjct: 2 KKLFIETYGCQMNVADSEVVASVMQMAGYEMCDNEAEADAIFMNTCSVRENAENKIYNRL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ K+G L++ V GC+A+ ++++ ++V GP +Y LP+++ +A Sbjct: 62 DTL----HAEQKKGRKLILGVLGCMAERVKDDLINNHH-ADLVAGPDSYLNLPDMIAQAE 116 Query: 145 FGKRVVDTDYSVEDKF-----ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G + +D + S + + +R+++ G F++I GCD FC +C+VPYTR Sbjct: 117 TGSKAIDIELSKTETYKDIVPQRIALSKIG--------GFVSIMRGCDNFCHYCIVPYTR 168 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-LDGEKCTFSDLLYSLSEIK 258 G E SR + V+ E R L G E+TLLGQNVN++ + + GE +F DLL ++ Sbjct: 169 GRERSRDVESVLAEVRDLCKQGYREVTLLGQNVNSYSFENEVTGEVTSFPDLLRLVAREV 228 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 +R+R++TSHP+DMSD ++ + + ++HLPVQSGSD++LK MNR++T Y Sbjct: 229 PTMRIRFSTSHPKDMSDDTLRVIAEEPNVCKHIHLPVQSGSDKVLKLMNRKYTVAWYLDR 288 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + I+ + PD IS+D VG+ GE ++D + +++L+ +GY +F FKYS R GT S Sbjct: 289 VKAIKEIIPDCGISTDIFVGYHGEEEEDHQMSLELMKTVGYDSSFMFKYSERPGTYASKH 348 Query: 379 L-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQ 436 L + + E VK RL + + + N G++ EVL+E K + +L GR+ + Sbjct: 349 LPDNISEEVKLRRLNEMIQLQTQLSAISNKKDEGKVFEVLVEGPSKRSREQLCGRTEQNK 408 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + NH+IG+ + V+IT +TL GE V Sbjct: 409 MVVFDKGNHHIGERVMVKITSSTSATLLGEAV 440 >gi|282892480|ref|ZP_06300814.1| hypothetical protein pah_c260o033 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497762|gb|EFB40126.1| hypothetical protein pah_c260o033 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 437 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 165/446 (36%), Positives = 248/446 (55%), Gaps = 14/446 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ F+V++YGCQMN DS M + ++G R + ADL++ NTC IR+ A KV Sbjct: 4 PKTFYVRTYGCQMNELDSEVMVGILENRGLVRSMEEETADLLIFNTCSIRDLAERKVMGK 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG++ +N D ++ V GC+A A+ E + + P ++ V+G + L +L+ Sbjct: 64 LGKLGRNRNH------DTIIGVTGCMANAKKESLFHKVPHIDFVLGTNNIHDLNRVLDDV 117 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 GK+ TD E + + + G R V+A ++I GC K+CT+CVVPYTRG E Sbjct: 118 ISTGKQTSLTDTKFETELDYM-----GAKRDNKVSAHVSIIRGCSKYCTYCVVPYTRGEE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR +V+E R L+ G EITLLGQNVN++ GK C F DLL L I GL R Sbjct: 173 VSRPPEHIVEECRHLVSQGYREITLLGQNVNSY-GKDAPEWGCLFHDLLEKLDAIPGLER 231 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHP D+S L+ A DL L ++H P+Q+GS+RILK M+R +T EY + + + Sbjct: 232 IRFMTSHPVDISRELMLAIRDLKSLCEFVHFPIQAGSNRILKKMHRMYTVEEYLEKVAML 291 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + P +A+ +D IVGFP ETD++F+ T ++ + YA AF F YS R GTP + + Sbjct: 292 RELVPHVALGTDIIVGFPTETDEEFQETYRILKETEYAVAFIFAYSARKGTPAMRWKDDI 351 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441 E VK +RL L + + + + +EVL+E+ + +L+ R+ ++VV Sbjct: 352 PEEVKDQRLKALMQLQEDIYAKQRQNLLDETLEVLVERPSTKDPRLLKARTRCWKNVVFE 411 Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467 IG + V+I TL L Sbjct: 412 GGEELIGTLQNVKIHSYTNQTLLATL 437 >gi|225351354|ref|ZP_03742377.1| hypothetical protein BIFPSEUDO_02948 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157698|gb|EEG70981.1| hypothetical protein BIFPSEUDO_02948 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 484 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 160/400 (40%), Positives = 245/400 (61%), Gaps = 23/400 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82 F+V + GCQMNV+DS R+ + + GY E D DLIV+NTC +RE AAE++Y Sbjct: 31 FYVHTLGCQMNVHDSERIAGVLEADGYVPATEEQYLDHDVDLIVMNTCAVRENAAERMYG 90 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G LK R +L + V GC+AQ + E+I +++P V+ V G + LP+LL++ Sbjct: 91 TIGLWAELKRQR----PNLQIAVGGCMAQLDREKIAKKAPWVDAVFGTKNIGSLPQLLDQ 146 Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 AR G V + +L +R V++++ I GC+ CTFC+VP TRG Sbjct: 147 ARIEGHAQVKVKEELNYFPSQLPT-----DRASKVSSWVAISVGCNNTCTFCIVPTTRGK 201 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E R ++ E R+ +D G E+TLLGQNVN++ G G+ G++ FS LL + EI+GL Sbjct: 202 EHDRRPGDILAEIRQCVDEGAKEVTLLGQNVNSF-GYGI-GDRFAFSKLLRACGEIEGLE 259 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + ++ I+ + Sbjct: 260 RVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRK 319 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR PD IS+D IVGFPGET++DF+ T+ +V++ +A AF+F YSPR GTP + M EQ Sbjct: 320 IREAMPDAQISTDIIVGFPGETEEDFQKTLRVVEEARFASAFTFIYSPRPGTPAAEM-EQ 378 Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 V +V + ERL+ LQ+++ E+ + + G+ +EV++ Sbjct: 379 VPHDVVQDRFERLVALQERITEENLKTFE---GRDVEVMV 415 >gi|268317612|ref|YP_003291331.1| RNA modification enzyme, MiaB family [Rhodothermus marinus DSM 4252] gi|262335146|gb|ACY48943.1| RNA modification enzyme, MiaB family [Rhodothermus marinus DSM 4252] Length = 482 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 167/448 (37%), Positives = 262/448 (58%), Gaps = 16/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + + GY + AD+++LNTC IRE A +KV L Sbjct: 27 RKVYIETYGCQMNVSDSEIVAAILRAHGYGLTRDPEQADVVLLNTCAIRENAEQKVRHRL 86 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R K K+ L + V GC+A+ ++L +V++VVGP Y LP LLE A Sbjct: 87 DIFRAHKR---KQRPGLRIGVLGCMAERLRHKLLEEEQLVDLVVGPDAYRDLPRLLEEAE 143 Query: 145 F-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+ V+ S E+ + ++ V N GVTA+++I GCD C FCVVP+TRG E Sbjct: 144 TTGQAAVNVQLSREETYADIAPVRYDSN---GVTAYVSIMRGCDNMCAFCVVPFTRGRER 200 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + ++DE +L++ G E+T+LGQNVN++R +G TF +LLY +S I +R+ Sbjct: 201 SRPVQSILDECARLVEEGYREVTVLGQNVNSYRYTE-NGTVVTFPELLYRVSLISPELRV 259 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RY+TSHP+D SD L+ H + + Y+HLPVQ G+ +L+ M R +T +Y +++R R Sbjct: 260 RYSTSHPKDCSDELLHVHRERHNVCNYIHLPVQHGNTDVLRRMRRTYTREQYLALVERAR 319 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQV 382 + P I++S+D I GF GET+++ R T+ L++++ + A+ F YS R GT + + V Sbjct: 320 RIVPGISLSTDIIAGFCGETEEEHRDTLSLLEEVRFDHAYMFMYSERPGTYAARKYKDDV 379 Query: 383 DENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438 VK RL + LQ ++ + N +G++ VL+E K +L GR+ + V Sbjct: 380 PLEVKKRRLQEIIELQTRI---SLENNRKEIGRVHTVLVEGPSKRSPEQLCGRTDTNKMV 436 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGE 466 V + + GD ++VRITD +TL+GE Sbjct: 437 VFDRHDFRPGDYVRVRITDCTSATLFGE 464 >gi|254525438|ref|ZP_05137490.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prochlorococcus marinus str. MIT 9202] gi|221536862|gb|EEE39315.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prochlorococcus marinus str. MIT 9202] Length = 464 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 170/455 (37%), Positives = 265/455 (58%), Gaps = 23/455 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM GY + + ADL++ NTC IR+ A +KVYSFLGR Sbjct: 21 YWITTFGCQMNKADSERMAGTLEKMGYTKADDELKADLVLYNTCTIRDNAEQKVYSFLGR 80 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + L +VVAGC+AQ EGE +LRR P +++V+GPQ L LL + G Sbjct: 81 ----QAKRKHKIPSLKLVVAGCLAQQEGESLLRRVPELDLVMGPQHVNNLENLLGKVDSG 136 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +V T E+ F I + R+ + ++ I GC++ C++CVVP RG E SR Sbjct: 137 NQVAAT----EETFISEDITNA--RRESSICGWVNIIYGCNERCSYCVVPSVRGKEQSRY 190 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260 + + E +KL ++ EITLLGQN++A+ G+ L G ++ T +DLLY + +++G+ Sbjct: 191 PNAIKSEIQKLANDNFKEITLLGQNIDAY-GRDLPGTTKEGRKENTLTDLLYYIHDVEGI 249 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHPR S LI+A +LD + + H+P QSG++ ILK M R +T +Y++II+ Sbjct: 250 RRIRFATSHPRYFSKRLIQACYELDKVCEHFHIPFQSGNNEILKLMARGYTIDKYKRIIE 309 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IRS+ P+ +I++D IV FPGE+++ +R T+ L+ IG+ Q + YSPR TP + Sbjct: 310 NIRSLMPNASITADAIVAFPGESEEQYRDTLKLISDIGFDQVMTAAYSPRPNTPAALWHN 369 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSP----WL 435 Q+ E VK ERL + + + N + I VLIE + K +++GR+ Sbjct: 370 QISEEVKKERLKEINELVETTSKQRNARYLDSIESVLIEGFNPKNSSQIMGRTRTNRLTF 429 Query: 436 QSVVLNSK-NHNIGDIIKVRITDVKISTLYGELVV 469 + N K N ++GD I V+I + + +L G L + Sbjct: 430 VEIPKNIKFNFSLGDEIDVKINEARPFSLTGILCL 464 >gi|110598152|ref|ZP_01386430.1| tRNA-i(6)A37 modification enzyme MiaB [Chlorobium ferrooxidans DSM 13031] gi|110340284|gb|EAT58781.1| tRNA-i(6)A37 modification enzyme MiaB [Chlorobium ferrooxidans DSM 13031] Length = 428 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 164/436 (37%), Positives = 253/436 (58%), Gaps = 22/436 (5%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN DS M + GY S +A +I+LNTC +RE A E++ +L + +K Sbjct: 1 MNQADSAIMAALLVEDGYVPAESEGEAGIILLNTCAVRENAVERIEHYLQHLLGMK---- 56 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 ++ DL++ VAGC+ Q + EE+ SP ++ + GP TY LP L+ +AR GKR +++ Sbjct: 57 RKQKDLILGVAGCIPQYQREEMFSMSPAIDFLAGPDTYRSLPLLISQARSGKRAASLEFN 116 Query: 156 VEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 + + G R++G +TAF+ + GC+ C +CVVP+TRG E S ++S V+DE Sbjct: 117 PAETYA------GIDPRRQGLITAFVPVMRGCNNMCAYCVVPFTRGRERSHTMSSVLDEV 170 Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274 RK+ +G EITLLGQNVN++ D + F+ LL ++S +R+R+TTSHP+D+S Sbjct: 171 RKVAASGYREITLLGQNVNSYSAPDRDMD---FAGLLEAVSRQAPELRIRFTTSHPKDIS 227 Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334 + L++ + ++HLPVQSGS R+L MNR HT +YR+ I IRSV PD+++S+D Sbjct: 228 ESLVRTIARRPNICNHIHLPVQSGSSRVLGLMNRGHTIEQYREKIALIRSVIPDVSLSTD 287 Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERL-- 391 I GF GE + D + T+ L+ I + A+ F YS R GT + LE V E VK RL Sbjct: 288 LIAGFCGEDEADHQLTLKLLSDIRFDAAYMFFYSTRPGTLAARTLEDDVPEAVKKRRLQE 347 Query: 392 -LCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGD 449 + LQ + Q + +G ++EVL E + +L+GR+ ++VV + K + GD Sbjct: 348 IIDLQNDISGQLL---QQSIGSVVEVLAESESRRSAAQLMGRTDTNRAVVFDRKGYQPGD 404 Query: 450 IIKVRITDVKISTLYG 465 ++ V IT +T+ G Sbjct: 405 LVSVLITSATSATMTG 420 >gi|171742622|ref|ZP_02918429.1| hypothetical protein BIFDEN_01735 [Bifidobacterium dentium ATCC 27678] gi|283456298|ref|YP_003360862.1| tRNA 2-methylthioadenosine synthase [Bifidobacterium dentium Bd1] gi|171278236|gb|EDT45897.1| hypothetical protein BIFDEN_01735 [Bifidobacterium dentium ATCC 27678] gi|283102932|gb|ADB10038.1| tRNA 2-methylthioadenosine synthase [Bifidobacterium dentium Bd1] Length = 503 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 161/400 (40%), Positives = 245/400 (61%), Gaps = 23/400 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MD-DADLIVLNTCHIREKAAEKVYS 82 F+V + GCQMNV+DS R+ + + GY MD D DLIV+NTC +RE AAE++Y Sbjct: 50 FYVHTLGCQMNVHDSERIAGVLENAGYVPATEEQYMDHDVDLIVMNTCAVRENAAERMYG 109 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +K R +L + V GC+AQ + E I ++P V+ V G + LP+LL++ Sbjct: 110 TIGLWAEMKRER----PNLQIAVGGCMAQLDRERIAEKAPWVDAVFGTKNIGSLPQLLDQ 165 Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 AR G V + + +L +R V++++ I GC+ CTFC+VP TRG Sbjct: 166 ARVQGHAQVKVEEELNYFPSQLPT-----DRDSRVSSWVAISVGCNNTCTFCIVPTTRGK 220 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E R ++ E R+ +D G EITLLGQNVN++ G G+ G++ FS LL + EI+GL Sbjct: 221 EHDRRPGDILAEIRQCVDEGAKEITLLGQNVNSF-GYGI-GDRFAFSKLLRACGEIEGLE 278 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + ++ I+ + Sbjct: 279 RVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRK 338 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR PD IS+D IVGFPGET++DF+ TM +V++ ++ AF+F YSPR GTP + M EQ Sbjct: 339 IREAMPDAQISTDIIVGFPGETEEDFQETMRVVEEARFSSAFTFIYSPRPGTPAAEM-EQ 397 Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 V +V + ERL+ LQ+++ E+ + + G+ +EV++ Sbjct: 398 VPHDVVQNRFERLVALQERITEENLKIFE---GRDVEVMV 434 >gi|240144034|ref|ZP_04742635.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis L1-82] gi|257203960|gb|EEV02245.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis L1-82] Length = 496 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 175/471 (37%), Positives = 263/471 (55%), Gaps = 34/471 (7%) Query: 16 QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 Q+ ++ P F V ++GCQMN DS ++ + GY +S ++AD ++ NTC +RE Sbjct: 42 QLSEEKGSPLTFHVSTFGCQMNARDSEKLVGILEKIGYVEEDS-EEADFVIYNTCTVREN 100 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTY 133 A KVY LG + + K+ +++ + GC+ Q E+I + VN++ G Sbjct: 101 ANNKVYGRLGYLNGFQ----KKNPFMMIGLCGCMMQEPTVVEKIKQSYRFVNLIFGTHNI 156 Query: 134 YRLPELL----------ERARFGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTA 178 Y+ EL+ A G + DTD VED V+ Y+ K GV Sbjct: 157 YKFAELIVTALENSYSEHAAGHGTSMTIDIWKDTDKIVED-----LPVERKYSFKSGVN- 210 Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238 I GC+ FC++C+VPY RG E SR +++ E +L +GV EI LLGQNVN++ GK Sbjct: 211 ---IMFGCNNFCSYCIVPYVRGRERSREPKEIIREVERLAADGVVEIMLLGQNVNSY-GK 266 Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 L+ + TF+ LL + ++ G+ R+R+ TSHP+D+SD LI+ + + +LHLP+QSG Sbjct: 267 NLE-QPMTFAQLLQEIEKVDGIERIRFMTSHPKDLSDDLIEVMKNSKKICKHLHLPLQSG 325 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 S RILK MNRR+ Y +++D+IR+ PDIA+++D IVGFPGET++DF TMD+V K+ Sbjct: 326 SSRILKLMNRRYDKEHYLELVDKIRAAVPDIALTTDIIVGFPGETEEDFEETMDVVRKVR 385 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 Y AF+F YS R GTP + M +Q+ E+V R L K+++ A GQ + VLI Sbjct: 386 YDSAFTFIYSKRTGTPAAVMEDQIPEDVIKARFDRLLKEVQTISAEKAGALTGQTLPVLI 445 Query: 419 EKHGKEKGKLV-GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 E+ ++ LV GR V L IG I+ V++ + K GE + Sbjct: 446 EEKNEQDASLVTGRLSNNSVVHLPGTEDMIGKIVDVKLLECKGFYYMGESI 496 >gi|315606981|ref|ZP_07881987.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccae ATCC 33574] gi|315251362|gb|EFU31345.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccae ATCC 33574] Length = 444 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 165/451 (36%), Positives = 265/451 (58%), Gaps = 17/451 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GYE ++AD I LNTC +RE A K+Y Sbjct: 3 KKLFIETYGCQMNVADSEVVASVMKMAGYELCEKEEEADAIFLNTCSVRENAENKIYH-- 60 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R+ L R K+G +L++ V GC+A+ ++++ ++V GP +Y LP+++ + Sbjct: 61 -RLDTLHAER-KKGRELILGVLGCMAERVKDDLIDNHH-ASLVCGPDSYLNLPDMVAQCE 117 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + +D + S + + + G N V+ F++I GC+ FC +C+VP+TRG E S Sbjct: 118 MGNKAIDIELSKTETYRDVIPQRIGGNH---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGK-GLDGEKCTFSDLLYSLSEIKG 259 R + ++ E L D G E+TLLGQNVN++ GK DG +F+ LL ++E Sbjct: 175 RDVESILKEVCDLRDRGFKEVTLLGQNVNSYGLLPNGKRPADG--TSFAQLLRKVAETVS 232 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +R+R+TTS+P DM+D +++A D+ L ++H P QSGSD++L+ MNR++T +Y + Sbjct: 233 EMRVRFTTSNPEDMTDDIVQAVADMPNLCNHIHFPAQSGSDKVLRLMNRKYTRQQYLDKV 292 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 I+ + PD I++D VG+ E+++D++ T+ LV ++GY AF FKYS R GT + L Sbjct: 293 ATIKRLIPDCGITTDIFVGYHDESEEDYQQTLSLVREVGYDSAFMFKYSERPGTYAAEHL 352 Query: 380 -EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 + V E K RL L K E N G+ +LIE K + +L+GR+ ++ Sbjct: 353 PDNVPEEEKVRRLNELIKLQTEISALQNKKDEGKEFVILIENFSKRSRQQLMGRTEQNKA 412 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV++ NH+IG+ +KVRIT +TL+GE V Sbjct: 413 VVIDKGNHHIGEFVKVRITGSTSATLFGEEV 443 >gi|119718067|ref|YP_925032.1| RNA modification protein [Nocardioides sp. JS614] gi|229890578|sp|A1SNG0|MIAB_NOCSJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|119538728|gb|ABL83345.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nocardioides sp. JS614] Length = 496 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 158/424 (37%), Positives = 247/424 (58%), Gaps = 26/424 (6%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 Q P+ + V++YGCQMNV+DS R+ + GY AD++V NTC +RE A K Sbjct: 5 QHTSPRTYEVRTYGCQMNVHDSERLTGLLEDAGYVAAPDGQQADVVVFNTCAVRENADNK 64 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 +Y LG + +K + + + V GC+AQ + + I R+P V+VV G LP L Sbjct: 65 LYGNLGHLAPVKAATPG----MQIAVGGCLAQKDRDTITTRAPWVDVVFGTHNIGSLPAL 120 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPY 197 LERAR D + + E L + +R A++++ GC+ CTFC+VP Sbjct: 121 LERARV------QDEAQVEILESLEVFPSTLPTRRESAYAAWVSVSVGCNNTCTFCIVPS 174 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSE 256 RG E R +++ E L+ +GV EITLLGQNVNA+ G++ G++ FS LL + E Sbjct: 175 LRGKEKDRRPGEILAEVEALVADGVSEITLLGQNVNAY---GVEFGDRQAFSKLLRACGE 231 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + GL R+R+T+ HP + +D +I A + +MP LH+P+QSGSD++L+ M R + ++ Sbjct: 232 VDGLERVRFTSPHPAEFTDDVIAAMAETPNVMPQLHMPLQSGSDKVLRDMRRSYRQRKFL 291 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 I++R+R+ PD AI++D IVGFPGET++DF TM +V ++ AF+F+YS R GTP + Sbjct: 292 GILERVRAAMPDAAITTDIIVGFPGETEEDFLQTMHVVRAARFSGAFTFQYSKRPGTPAA 351 Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLV 429 + +QV V + ERL+ L ++ ++ N VG+ +E+++ E G++ +L Sbjct: 352 TLPDQVPPEVVKDRYERLVALVNEIAWEE---NKRLVGRRVELMVAEGEGRKDAATHRLS 408 Query: 430 GRSP 433 GR P Sbjct: 409 GRGP 412 >gi|309775695|ref|ZP_07670693.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae bacterium 3_1_53] gi|308916534|gb|EFP62276.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae bacterium 3_1_53] Length = 478 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 172/448 (38%), Positives = 258/448 (57%), Gaps = 16/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++++++YGCQ N DS + + + V DADLI++NTC IR+ A +KV + Sbjct: 43 KKYYLRTYGCQANERDSETLAGILEEMNFTAVEHPQDADLILMNTCAIRKNAEDKVLGEI 102 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-E 141 G ++ LK ++ DLL + GC+AQ E +L + VN++ G +RLPELL + Sbjct: 103 GSLKRLKRNK----PDLLFGLCGCMAQEEDVVATLLEKYRHVNLIFGTHNIHRLPELLYD 158 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 GKR V+ D E L + G ++ A++ I GCDKFCT+C+VPYTRG Sbjct: 159 VMVHGKRSVEVLSKEGDVIENLPVRRFGRHK-----AWVNIMYGCDKFCTYCIVPYTRGK 213 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR + +++E R L +G EITLLGQNVN++ GK L E F+ LL ++ G+ Sbjct: 214 ERSRLMEDILEEVRVLKQDGFKEITLLGQNVNSY-GKDLHMEG-GFAKLLEETAKT-GIE 270 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP D SD +I D +MP++HLPVQSG ILK M RR+T +Y + + Sbjct: 271 RIRFTTSHPWDFSDEMIDVIARYDNIMPFIHLPVQSGDSDILKIMGRRYTREQYLTLFHK 330 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ AIS+D IVGFP ET++ F+ T+ LVD+ + AF+F YSPR GTP + M + Sbjct: 331 IKERVAGCAISTDIIVGFPNETEEQFQNTLSLVDECQFDNAFTFIYSPREGTPAAAMEDN 390 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVL 440 + VK RL L ++ N+A +G I++VL++ K+ ++ G + + V Sbjct: 391 IPLAVKQRRLQELNERWNLYAHEKNEAYLGSIVKVLVDGASKKNKEVYSGYTETNKLVNF 450 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + GDI+ V+IT K +L GE + Sbjct: 451 QRTDAKPGDIVSVKITACKTFSLDGEQI 478 >gi|123966699|ref|YP_001011780.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT 9515] gi|229890602|sp|A2BY12|MIAB_PROM5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|123201065|gb|ABM72673.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT 9515] Length = 464 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 171/453 (37%), Positives = 261/453 (57%), Gaps = 23/453 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM GY R ADL++ NTC IR+ A +KVYSFLGR Sbjct: 21 YWITTFGCQMNKADSERMAGTLEKMGYSRAIDELKADLVLYNTCTIRDSAQQKVYSFLGR 80 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 K+S K L +VVAGC+AQ EGE +LRR P +++++GPQ L LLER G Sbjct: 81 QIKRKHSLPK----LKLVVAGCLAQQEGESLLRRVPELDLIMGPQHVNNLENLLERVDSG 136 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +VV T E+ F I + R + ++ I GC++ C++CVVP RG E SR Sbjct: 137 NQVVAT----EETFISEDITNA--RRDSTICGWVNIIYGCNERCSYCVVPSVRGKEQSRY 190 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-----DGEK-CTFSDLLYSLSEIKGL 260 + E + L N EITLLGQN++A+ G+ L +G K T +DLLY + ++ G+ Sbjct: 191 PKAIKSEIQTLAQNNYKEITLLGQNIDAY-GRDLPVTTKEGRKENTLTDLLYFIHDVDGI 249 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R++TSHP+ S LIKA +LD + + H+P QSG+D IL+ M R +T +Y++II+ Sbjct: 250 RRIRFSTSHPKYFSKRLIKACYELDKVCEHFHIPFQSGNDEILRLMARGYTIDKYKKIIE 309 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IRS+ P+ +I++D IV FPGET+ ++ T+ L+ +G+ Q + YSPR TP + Sbjct: 310 NIRSLMPNASITADAIVAFPGETEKQYQDTLRLISDVGFDQVMTAAYSPRPNTPAAIWNN 369 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439 Q+ E VK ERL + + + N + VLIE + K +++GR+ + Sbjct: 370 QIAEEVKKERLKEINELVEATSRKRNQRYLNNTESVLIEGLNPKNSMQMMGRTRTNRLTF 429 Query: 440 LNSK-----NHNIGDIIKVRITDVKISTLYGEL 467 + N++ GD + V+IT+ + +L G++ Sbjct: 430 VEIPENIEFNYSFGDELNVKITEARSFSLSGQI 462 >gi|313901801|ref|ZP_07835224.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermaerobacter subterraneus DSM 13965] gi|313467921|gb|EFR63412.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermaerobacter subterraneus DSM 13965] Length = 518 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 185/446 (41%), Positives = 258/446 (57%), Gaps = 16/446 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + + ++GCQMN DS + G +DDADLI+LNTC +RE A EKV+ +G Sbjct: 59 YKILTWGCQMNERDSEILAGQLEEMGMVPAGLLDDADLILLNTCAVRETAEEKVFGTIGY 118 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ LK ++ DL++ + GC+AQ E I R P V++V G ++LP+L+ER R Sbjct: 119 LKVLK----QKNPDLILGLCGCMAQEEATIRRIQRYYPHVDLVFGTHNVHQLPQLIERVR 174 Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + VVD + E E L G GV A++ I GCDKFCTFC+VP TRG E Sbjct: 175 REEGMVVDVWQAAEGVVEHLPSRRAG-----GVKAWVNIIYGCDKFCTFCIVPTTRGRER 229 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR V+ E L G E+TLLGQNVN++ GK L G F+DLL L ++ G+ + Sbjct: 230 SRRPEDVIAEVEYLAAEGYKEVTLLGQNVNSY-GKDL-GIGYDFADLLARLDQVPGIRWI 287 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 RYTTSHPRD SD LI+ + D + + HLPVQSGS+++L+ MNRR+T Y ++I++IR Sbjct: 288 RYTTSHPRDFSDKLIRTIAESDKVTEHFHLPVQSGSNQVLRWMNRRYTREHYLRLIEKIR 347 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PD I++D IVGFP ET++DFR T+DLV ++ Y AF+F YSPR GTP + Q+ Sbjct: 348 EAVPDACITTDIIVGFPKETEEDFRQTLDLVRQVEYDNAFTFIYSPREGTPAARW-PQLP 406 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 VK ERL L + E + N VGQ VLI+ K+ +++ +VL S Sbjct: 407 REVKQERLERLMEVQYEINLRKNKRLVGQRAVVLIDGPSKKNPQVLSARTRTNKLVLVSG 466 Query: 444 NHN-IGDIIKVRITDVKISTLYGELV 468 + G +V IT + TL G L+ Sbjct: 467 DAAWAGRFARVEITRAQTFTLEGRLL 492 >gi|290956967|ref|YP_003488149.1| radical SAM protein [Streptomyces scabiei 87.22] gi|260646493|emb|CBG69590.1| putative Radical SAM protein [Streptomyces scabiei 87.22] Length = 483 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 169/448 (37%), Positives = 257/448 (57%), Gaps = 29/448 (6%) Query: 36 MNVYDSLRMEDMFFSQGYERVN---SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 MNV+DS R+ + GY R +AD++V NTC +RE A ++Y LGR+ +K Sbjct: 1 MNVHDSERLSGLLEDAGYVRAPEDAGEGNADVVVFNTCAVRENADNRLYGNLGRLAPMKT 60 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VD 151 +R + + V GC+AQ + + I++++P V+VV G +LP LLERAR V+ Sbjct: 61 ARP----GMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARVQDEAQVE 116 Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211 S+E L R+ A+++I GC+ CTFC+VP RG E R ++ Sbjct: 117 IAESLEAFPSTLPT-----RRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDIL 171 Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 E L+ GV EITLLGQNVNA+ G D G++ FS LL + +I+GL R+R+T+ HP Sbjct: 172 AEIEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGKIEGLERVRFTSPHP 228 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 RD +D +I A + +MP LH+P+QSGSD +LK+M R + Y II+++R+ P A Sbjct: 229 RDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRASIPHAA 288 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---K 387 I++D IVGFPGET++DF TM +V + + QAF+F+YS R GTP + M Q+ + V + Sbjct: 289 ITTDIIVGFPGETEEDFEQTMHVVREARFTQAFTFQYSKRPGTPAATMENQIPKQVVQAR 348 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQSVVLNSK 443 ERL+ LQ+++ + N VG+ +E+++ E G++ G +L GR+ + V Sbjct: 349 YERLVALQEEISWDE---NKKQVGRTLELMVAEGEGRKDGATHRLSGRAADNRLVHFTKP 405 Query: 444 NHNI--GDIIKVRITDVKISTLYGELVV 469 + + GD++ V IT L E V Sbjct: 406 DQEVRPGDVVTVEITYAAPHHLLAEGAV 433 >gi|189460206|ref|ZP_03008991.1| hypothetical protein BACCOP_00843 [Bacteroides coprocola DSM 17136] gi|189433067|gb|EDV02052.1| hypothetical protein BACCOP_00843 [Bacteroides coprocola DSM 17136] Length = 457 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 166/448 (37%), Positives = 262/448 (58%), Gaps = 21/448 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY S+D+AD + +NTC IR+ A +K+ + L Sbjct: 19 KKLFIETYGCQMNVADSEVIASIMQMAGYSPCESLDEADAVFMNTCSIRDNAEQKILNRL 78 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +L+ R L+V V GC+A+ +++ V++V GP Y LP+L+ Sbjct: 79 EFFHSLRKKR----KHLIVGVLGCMAERVKNDLIENHH-VDLVAGPDAYLTLPDLIGAVE 133 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FC +C+VPYTRG E Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCHYCIVPYTRGRE 188 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L G E+TLLGQNVN++R + +GE TF LL ++E +R Sbjct: 189 RSRDVESILNEVHDLQQKGYKEVTLLGQNVNSYRFER-EGEVVTFPMLLRIVAEAVPEMR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD + ++ + ++HLPVQSGS RILK MNR++T Y + ++ I Sbjct: 248 VRFTTSHPKDMSDETLYVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVEAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD +S+D GF ET++D + ++ L+ + Y AF FKYS R GT S L + Sbjct: 308 RRIIPDCGLSTDIFSGFHSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK RL + LQ +L + + N VG+ EVL+E K K +L GR+ + Sbjct: 368 VPEEVKIRRLNEMIELQNQLSAESNARN---VGKTFEVLVEGISKRSKEQLFGRTEQNKV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYG 465 VV + H IGD+++VRIT+ +TL G Sbjct: 425 VVFDRGTHRIGDLVRVRITESSSATLKG 452 >gi|300775426|ref|ZP_07085288.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Chryseobacterium gleum ATCC 35910] gi|300506166|gb|EFK37302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Chryseobacterium gleum ATCC 35910] Length = 478 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 174/460 (37%), Positives = 265/460 (57%), Gaps = 29/460 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGCQMN DS + + QGY +++ADLI+LNTC IREKA + V L Sbjct: 25 KKLFLESYGCQMNFSDSEIVASILNEQGYNTTMKVEEADLILLNTCSIREKAEQTVRMRL 84 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +NLK KE ++ V V GC+A+ + L +V++VVGP Y LP LL+ Sbjct: 85 SQFKNLK----KERPNMTVGVLGCMAERLKTKFLEEEQLVDLVVGPDAYRDLPNLLKETD 140 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ ++ S E+ + ++ V G N GVTAF+TI GCD CTFCVVP+TRG E S Sbjct: 141 DGRDAINVILSKEETYADINPVRLGGN---GVTAFVTITRGCDNMCTFCVVPFTRGRERS 197 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRG--------KGLDGEKCT---FSDLL 251 R +++E + L +NG EITLLGQNV++ W G K + +K T F+ LL Sbjct: 198 RDPHSIIEECKDLANNGYKEITLLGQNVDSYLWYGGGPKKDFAKASEMQKATAVNFAQLL 257 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +++ +R+R++TS+P+DMS + + D + Y+HLPVQSGS+ +L +MNR+HT Sbjct: 258 DLVAKAVPELRIRFSTSNPQDMSLDVFRMMAKHDNICKYVHLPVQSGSNNMLAAMNRQHT 317 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY +I + + + P++A S D IVGF ET++D + T+ L+ ++ Y + F YS R Sbjct: 318 REEYLDLIRKAKEIVPEVAFSQDMIVGFCNETEEDHQDTLSLMREVEYDYGYMFAYSERP 377 Query: 372 GTPGSNMLE-QVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKG 426 GTP +E + +VK RL + LQ +L ++++ + VG+ ++LIE K K Sbjct: 378 GTPAHKKMEDNIPADVKQRRLAEVIALQGELSKKRMK---SYVGREHQILIEGISKKNKN 434 Query: 427 KLVGRSPWLQSVVLNS-KNHNIGDIIKVRITDVKISTLYG 465 + GR+ V + + IGDI+ V + D TL G Sbjct: 435 QWKGRNSQNAVCVFDKLEGQKIGDIVNVFVYDNTQGTLLG 474 >gi|281411880|ref|YP_003345959.1| RNA modification enzyme, MiaB family [Thermotoga naphthophila RKU-10] gi|281372983|gb|ADA66545.1| RNA modification enzyme, MiaB family [Thermotoga naphthophila RKU-10] Length = 443 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 171/448 (38%), Positives = 264/448 (58%), Gaps = 24/448 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF++K++GCQMN DS M + +G+ ++ ++AD++++NTC +R K+ EK YS LG Sbjct: 2 RFYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 ++ +K R L+V VAGCVA+ E E++L R + V+G + ++ E ++RA Sbjct: 62 QMLKIKRKR-----KLVVGVAGCVAEKEREKLLERG--ADFVLGTRAVLKVTEAVKRALQ 114 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G++V + +++ LS + R A++TI GCD+FCT+C+VPYTRG E SR Sbjct: 115 GEKVALFEDHLDEYTHDLSRI-----RSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSR 169 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264 + +++E R+L G E+T LGQNV+A+ GK L DG + + LL S+I+G+ R+ Sbjct: 170 PMEDILEEVRELAKQGYREVTFLGQNVDAY-GKDLKDG--SSLAKLLEEASKIEGIERIW 226 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TS+P D SD LI+ + +HLPVQSGS+RILK MNR +T EY +++RIRS Sbjct: 227 FLTSYPTDFSDELIEVIARNPKVAKSVHLPVQSGSNRILKLMNRSYTKEEYLALLERIRS 286 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVD 383 PD+AISSD IVGFP ET++DF T+DLV+K + + YSPR GT + ++V Sbjct: 287 KVPDVAISSDIIVGFPTETEEDFMETIDLVEKAQFERLNLAIYSPRKGTVAWKHYKDEVP 346 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 K R L+ LQK++ + N+ G+ + V++E K G GR + + Sbjct: 347 YEEKVRRMQFLMNLQKRINRK---LNERYKGKTVRVIVEAQAK-NGLFYGRDIRNKIIAF 402 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG V+I + LYG++V Sbjct: 403 EGEEWMIGRFADVKIEKITAGPLYGKVV 430 >gi|283797908|ref|ZP_06347061.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. M62/1] gi|291074375|gb|EFE11739.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. M62/1] gi|295091886|emb|CBK77993.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium cf. saccharolyticum K10] Length = 483 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 168/445 (37%), Positives = 262/445 (58%), Gaps = 16/445 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F ++++GCQMN +DS ++E + G+ + ++ ++ADL++ NTC +RE A ++VY LG Sbjct: 48 FHIETFGCQMNAHDSEKLEGILLEAGFVKTDT-EEADLVLYNTCTVRENANQRVYGRLGY 106 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERA 143 + +LK K+ +L+ + GC+ Q + E+I + V+V+ G Y+L ELL R Sbjct: 107 LNSLK----KKNPRMLIGLCGCMMQEDQVVEKIKKTYRFVDVIFGTHNIYKLAELLFARL 162 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK V+D + DK + D RK + + I GC+ FC++C+VPY RG E Sbjct: 163 HTGKMVIDI-WKDTDKI----VEDLPSERKYPFKSGVNIMFGCNNFCSYCIVPYVRGRER 217 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E L+ +GV E+ LLGQNVN++ GK L E TF++LL + +I+GL R+ Sbjct: 218 SRRPEDIIKEIEGLVADGVVEVMLLGQNVNSY-GKNLP-EPITFAELLRRVEQIEGLERI 275 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD LI+ D + +LHLP+QSGS RIL MNRR+T +Y + ++I+ Sbjct: 276 RFMTSHPKDLSDELIEVMRDSKKICRHLHLPLQSGSSRILGQMNRRYTKEQYLALAEKIK 335 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PDI++++D IVGFPGET +DF T+D+V K+ Y AF+F YS R GTP + M QV Sbjct: 336 TAIPDISLTTDIIVGFPGETKEDFEETLDVVRKVRYDSAFTFIYSKRTGTPAAVMENQVP 395 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442 E+V ER L +++ + V + +VL+E+ +G + GR +V Sbjct: 396 EDVIKERFDRLLSEVQRISNEISGRDVHTVQKVLVEEPDTHAEGMVTGRLSNNITVHFEG 455 Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467 IG I+ V + + K G+L Sbjct: 456 SRELIGKIVDVYLEESKGFYYMGKL 480 >gi|288925880|ref|ZP_06419810.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccae D17] gi|288337304|gb|EFC75660.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccae D17] Length = 444 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 165/451 (36%), Positives = 265/451 (58%), Gaps = 17/451 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GYE ++AD I LNTC +RE A K+Y Sbjct: 3 KKLFIETYGCQMNVADSEVVASVMKMAGYELCEKEEEADAIFLNTCSVRENAENKIYH-- 60 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R+ L R K+G +L++ V GC+A+ ++++ ++V GP +Y LP+++ + Sbjct: 61 -RLDTLHAER-KKGRELILGVLGCMAERVKDDLIDNHH-ASLVCGPDSYLNLPDMVAQCE 117 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + +D + S + + + G N V+ F++I GC+ FC +C+VP+TRG E S Sbjct: 118 MGNKAIDIELSKTETYRDVIPQRIGGNH---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGK-GLDGEKCTFSDLLYSLSEIKG 259 R + ++ E L D G E+TLLGQNVN++ GK DG +F+ LL ++E Sbjct: 175 RDVESILKEVCDLRDRGFKEVTLLGQNVNSYGLLPNGKRPADG--TSFAQLLRKVAETVP 232 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +R+R+TTS+P DM+D +++A D+ L ++H P QSGSD++L+ MNR++T +Y + Sbjct: 233 EMRVRFTTSNPEDMTDDIVQAVADMPNLCNHIHFPAQSGSDKVLRLMNRKYTRQQYLDKV 292 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 I+ + PD I++D VG+ E+++D++ T+ LV ++GY AF FKYS R GT + L Sbjct: 293 ATIKRLIPDCGITTDIFVGYHDESEEDYQQTLSLVREVGYDSAFMFKYSERPGTYAAEHL 352 Query: 380 -EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 + V E K RL L K E N G+ +LIE K + +L+GR+ ++ Sbjct: 353 PDNVPEEEKVRRLNELIKLQTEISALQNKKDEGKEFVILIENFSKRSRQQLMGRTEQNKA 412 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV++ NH+IG+ +KVRIT +TL+GE V Sbjct: 413 VVIDKGNHHIGEFVKVRITGSTSATLFGEEV 443 >gi|119026050|ref|YP_909895.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bifidobacterium adolescentis ATCC 15703] gi|229890431|sp|A1A280|MIAB_BIFAA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|118765634|dbj|BAF39813.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] Length = 480 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 160/400 (40%), Positives = 244/400 (61%), Gaps = 23/400 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82 F+V + GCQMNV+DS R+ + + GY E D DLIV+NTC +RE AAE++Y Sbjct: 27 FYVHTLGCQMNVHDSERIAGVLEADGYVPATEEQYLNHDIDLIVMNTCAVRENAAERMYG 86 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G LK R +L + V GC+AQ + E+I +++P V+ V G + LP+LL++ Sbjct: 87 TIGLWAELKRER----PNLQIAVGGCMAQLDREKIAKKAPWVDAVFGTKNIGSLPQLLDQ 142 Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 AR G V + +L +R V++++ I GC+ CTFC+VP TRG Sbjct: 143 ARIEGHAQVKVQEELNYFPSQLPT-----DRASKVSSWVAISVGCNNTCTFCIVPTTRGK 197 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E R ++ E R+ +D G E+TLLGQNVN++ G G+ G++ FS LL + EI GL Sbjct: 198 EHDRRPGDILAEIRQCVDEGAKEVTLLGQNVNSF-GYGI-GDRFAFSKLLRACGEIDGLE 255 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + ++ I+ + Sbjct: 256 RVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRK 315 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR PD IS+D IVGFPGET++DF+ T+ +V++ +A AF+F YSPR GTP + M EQ Sbjct: 316 IREAMPDAQISTDIIVGFPGETEEDFQETLRVVEEARFASAFTFIYSPRPGTPAAEM-EQ 374 Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 V +V + ERL+ LQ+++ E+ + + G+ +EV++ Sbjct: 375 VPHDVVQDRFERLVALQERITEENLKTFE---GRDVEVMV 411 >gi|237737681|ref|ZP_04568162.1| MIAB protein [Fusobacterium mortiferum ATCC 9817] gi|229419561|gb|EEO34608.1| MIAB protein [Fusobacterium mortiferum ATCC 9817] Length = 444 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 159/441 (36%), Positives = 266/441 (60%), Gaps = 16/441 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV +S +++ MF + GYE ++++++D+ LNTC +RE AA ++Y LG +++ Sbjct: 16 TYGCQMNVNESAKIKKMFQNMGYEITDNIEESDVTFLNTCTVREGAATQIYGKLGELKH- 74 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--KR 148 IKE +++ V GC AQ +G E++++ P +++V+G Q R+P+ ++ G K Sbjct: 75 ----IKENKGMIIGVTGCFAQEQGIELVKKFPQIDIVMGNQNIGRIPQAIDDIEHGVDKH 130 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 +V TD +D RL D ++ K+ TA ++I GC+ FC +C+VPY RG E S ++ Sbjct: 131 LVFTDCE-DDLPPRL---DADFDSKK--TASISITYGCNNFCAYCIVPYVRGRERSVPMT 184 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +++ + R+ ++ G EI LLGQNVN++ + +G+ F+ LL + +++G +R+ + Sbjct: 185 EILHDVRQYVEKGYKEIILLGQNVNSYGKEFKNGD--NFARLLEEICKVEGDFIVRFVSP 242 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 HPRD +D +I + + LHLP+Q+GS ILK+MNR +T +Y + ++I+ Sbjct: 243 HPRDFTDEVIDVIAKNEKIARSLHLPLQAGSSTILKAMNRGYTKEQYIALANKIKERILG 302 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A+++D IVGFPGET++DF+ T+D+V +I + +F F YS R GT + M Q+DE VK Sbjct: 303 VALTADVIVGFPGETEEDFQDTLDVVRQIQFENSFMFMYSIRKGTKAATMENQIDEAVKK 362 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNI 447 +RL L ++ + VG+ VL+E K+ K L GR+ + V+ Sbjct: 363 DRLQRLIDVQTACSLAESKTYVGKTFRVLVEGESKKNKEVLSGRTSTNKIVLFKGDKALE 422 Query: 448 GDIIKVRITDVKISTLYGELV 468 G + V+I D K TLYGE+V Sbjct: 423 GTFVNVKINDCKTWTLYGEIV 443 >gi|50955210|ref|YP_062498.1| hypothetical protein Lxx15990 [Leifsonia xyli subsp. xyli str. CTCB07] gi|81390772|sp|Q6AE03|MIAB_LEIXX RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|50951692|gb|AAT89393.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 535 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 154/398 (38%), Positives = 242/398 (60%), Gaps = 23/398 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + GY N ++AD++V+NTC +RE A K+Y LG Sbjct: 26 YEVRTFGCQMNVHDSERLSGSLEAAGYVPANG-EEADIVVINTCAVRENADNKLYGNLGH 84 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + ++K + + + V GC+AQ + IL ++P V+VV G LP LLERAR Sbjct: 85 LASVK----RRHAGMQIAVGGCLAQKDKNVILEKAPWVDVVFGTHNMGALPRLLERARH- 139 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 D + + E L KR + +++I GC+ CTFC+VP RG E Sbjct: 140 -----NDAAEIEILEALETFPSTLPTKRDSSFSGWVSISVGCNNTCTFCIVPALRGKEKD 194 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263 R ++ E + L+D G E+TLLGQNVN++ G++ G++ FS LL + +I+GL R+ Sbjct: 195 RRPGDILAEVQALVDEGAVEVTLLGQNVNSY---GVEFGDRQAFSKLLRAAGQIEGLERI 251 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP ++ +I A + +MP LH+P+QSGSDRIL+SM R + + ++ I+DR+R Sbjct: 252 RFTSPHPAAFTEDVIDAMAETPNVMPQLHMPLQSGSDRILRSMRRSYRSEKFLGILDRVR 311 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P AIS+D IVGFPGET++DF T+ +V+ +A AF+F+YS R GTP + M QV Sbjct: 312 AKLPGAAISTDIIVGFPGETEEDFLDTLRVVEAARFASAFTFQYSIRPGTPAATMAGQVP 371 Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + V E RL+ LQ+++ ++ N+ +G+ +E+L+ Sbjct: 372 KEVVQERYDRLIALQERISLEE---NEKLIGRDVELLV 406 >gi|312139388|ref|YP_004006724.1| tRNA modification enzyme miab [Rhodococcus equi 103S] gi|311888727|emb|CBH48039.1| putative tRNA modification enzyme MiaB [Rhodococcus equi 103S] Length = 505 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 153/418 (36%), Positives = 247/418 (59%), Gaps = 24/418 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS R+ + GY + + ADL+V NTC +RE A K+Y L Sbjct: 12 YEVRTYGCQMNVHDSERLSGLLEDAGYTKAVPGEQADLVVFNTCAVRENADNKLYGNLSH 71 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + +K R + + V GC+AQ + + +++++P V+VV G LP LLERAR Sbjct: 72 LAPVKEERP----GMQIAVGGCLAQKDRDTVVKKAPWVDVVFGTHNIGSLPALLERARHN 127 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ V+ S+E L R+ +++I GC+ CTFC+VP RG E+ R Sbjct: 128 EQAQVEILESLEAFPSTLPA-----KRESAYAGWVSISVGCNNTCTFCIVPSLRGKEVDR 182 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLV 261 ++ E + L++ GV E+TLLGQNVN++ D E + F+ LL + +I GL Sbjct: 183 RPGDILAEVQALVNEGVLEVTLLGQNVNSYGVSFADPELPRDRGAFAKLLSACGQIDGLE 242 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP + +D +I+A + P LH+P+QSGSDR+LK+M R + + ++ II++ Sbjct: 243 RVRFTSPHPAEFTDDVIEAMATTPNVCPQLHMPLQSGSDRVLKAMRRSYRSAKFLGIIEK 302 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ P AI++D IVGFPGET++DF+AT+D+V + + AF+F+YS R GTP + M Q Sbjct: 303 VRAAMPHAAITTDIIVGFPGETEEDFQATLDVVRQARFTSAFTFQYSKRPGTPAAEMNGQ 362 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432 + + V E RL+ LQ+++ ++ N VG +E+L+ + E ++ GR+ Sbjct: 363 LPKAVVQERYDRLIALQEEITLEE---NRKLVGTEVELLVTAGDGRKNAETARMSGRA 417 >gi|284048550|ref|YP_003398889.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans DSM 20731] gi|283952771|gb|ADB47574.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans DSM 20731] Length = 442 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 162/452 (35%), Positives = 253/452 (55%), Gaps = 27/452 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + + +YGCQMN DS GY DAD+I++NTC +RE A +K+ + Sbjct: 3 KHYTILNYGCQMNESDSEHYAGQLSDLGYHYTEDYHDADVILINTCCVRESAEKKILGKI 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++ +K +E ++ V GC+AQ +GE+ L++ P V++++G +L+ Sbjct: 63 GEMKQVK----REDPSKVLCVTGCMAQKDGEDFLKKYPQVDLLIGTAHVNNFSAILQ--- 115 Query: 145 FGKRVVDTDYSVEDK---FERLSIV----DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 D + + K F L+++ +G + RK A++ I GC+ FCT+C+VPY Sbjct: 116 ------DYLHQTQRKSGMFNDLTVMPREFEGHFVRKSSYAAWVPIMYGCNNFCTYCIVPY 169 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSE 256 RG E SRS + +E RK +D G E TLLGQNVN++ G D G+K F+ LL + Sbjct: 170 VRGRERSRSAEAICEEIRKAVDQGYREFTLLGQNVNSY---GKDRGDKDAFAALLRQVDA 226 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I G+ R+RY TSHPRDMS+ LI+ + + + H+PVQSGS RI+++MNR +T Y Sbjct: 227 IPGVERVRYMTSHPRDMSEELIRTVAESKHVCKHFHIPVQSGSTRIMQAMNRGYTRESYL 286 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++D IR P+ +++D IVGFPGET++DF+ T+ L D++ Y A++F YS R GTP + Sbjct: 287 HLVDTIRKYVPEAVLTTDIIVGFPGETEEDFQETLSLFDRVSYDAAYTFIYSKRSGTPAA 346 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWL 435 M QV E VK +RL L + + N VG+ + V++E K+ GR+ Sbjct: 347 AMEAQVPEAVKKDRLNRLMELQNRHSLKHNQKLVGRTLPVMVEGLSHNNSKMWSGRTDGN 406 Query: 436 QSVV--LNSKNHNIGDIIKVRITDVKISTLYG 465 + V+ + + N GD++ V I + L G Sbjct: 407 KLVLWPVGERFFNPGDLVPVTIETAQTWLLKG 438 >gi|305666326|ref|YP_003862613.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Maribacter sp. HTCC2170] gi|88708318|gb|EAR00555.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Maribacter sp. HTCC2170] Length = 481 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 260/459 (56%), Gaps = 22/459 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F++SYGC MN DS + + ++G+ ++DADL+++NTC IREKA V L Sbjct: 24 RNLFIESYGCAMNFSDSEIVASILANEGFNTTQKLEDADLVLVNTCSIREKAELTVRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K R + V V GC+A+ ++L IV++VVGP Y LP L++ Sbjct: 84 EKYNAIKKKR----PHMKVGVLGCMAERLKSKLLEEEKIVDMVVGPDAYKDLPNLIQEID 139 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V+ S ++ + ++ V N GV+A ++I GCD CTFCVVP+TRG E S Sbjct: 140 EGREAVNVILSKDETYGDIAPVRLNTN---GVSALVSITRGCDNMCTFCVVPFTRGRERS 196 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251 R ++ E L + G EITLLGQNV++ W G GL D +K + F++LL Sbjct: 197 RDSQSIIAEVNDLWNKGFKEITLLGQNVDSYLWYGGGLKKDFDKASEMQIATAVDFANLL 256 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++E + + +R++TS+P+DMS +IK D + ++HLPVQSGS+RILK+MNR HT Sbjct: 257 DMVAEAQPKMWIRFSTSNPQDMSLDVIKTMAKHDNICNHIHLPVQSGSNRILKAMNRLHT 316 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY ++ID IR + P+IA+S D I GFP ET++D + T+ ++D++ Y + + YS R Sbjct: 317 IEEYFELIDNIRKIIPEIALSHDMISGFPTETEEDHQDTLAVLDRVKYDYGYMYSYSERP 376 Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV- 429 GT + M + + E K RL + RE + +G + E+LIE K+ + Sbjct: 377 GTMAARKMDDDIPEKTKQRRLSEIIALQREHCQFRTEKHLGSVQEILIEGTSKKDETMWK 436 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 GR+ V +N+ +GD + V++ D +TL GE V Sbjct: 437 GRNSQNVVAVFPKENYKLGDFVDVKMNDCTSATLIGEAV 475 >gi|315502601|ref|YP_004081488.1| RNA modification enzyme, miab family [Micromonospora sp. L5] gi|315409220|gb|ADU07337.1| RNA modification enzyme, MiaB family [Micromonospora sp. L5] Length = 499 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 159/417 (38%), Positives = 247/417 (59%), Gaps = 21/417 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYS 82 P+ + V++YGCQMNV+DS R+ + GY R D+ D++V NTC +RE A ++Y Sbjct: 9 PRTYQVRTYGCQMNVHDSERISGLLEDAGYVRAAEADEQPDVVVFNTCAVRENADNRLYG 68 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LG +R +K K G + + V GC+AQ + +I+R++P V+VV G LP LL+R Sbjct: 69 NLGHLRPVK---AKHPG-MQIAVGGCLAQKDRGDIVRKAPWVDVVFGTHNIGSLPALLDR 124 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRG 200 AR + VE E L + +R T +++I GC+ CTFC+VP RG Sbjct: 125 ARH-----NAAAEVE-ILESLEVFPSTLPTRRESTYAGWVSISVGCNNTCTFCIVPSLRG 178 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259 E R ++ E R L+D+GV E+TLLGQNVN++ G++ G++ F LL + +I G Sbjct: 179 KEKDRRPGDILSEVRALVDSGVLEVTLLGQNVNSY---GVEFGDRYAFGKLLRACGDIDG 235 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+T+ HP+D +D +I A + + LH+P+QSGSD +L++M R + + Y II Sbjct: 236 LERVRFTSPHPKDFTDDVIAAMAETPNVCHSLHMPLQSGSDDVLRAMRRSYRSERYLGII 295 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +++R+ PD AI++D IVGFPGET+ DF T+D+V + ++ AF+F+YS R GTP + M Sbjct: 296 EKVRAAMPDAAITTDIIVGFPGETEADFARTLDVVREARFSSAFTFQYSKRPGTPAATMD 355 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432 Q+ + V ER L + E + N VG+ +EVL+ + + G++ GR+ Sbjct: 356 GQLPKQVVQERYERLIACVEEITWAENKKLVGETVEVLVAVGEGRKDERTGRMSGRA 412 >gi|229815363|ref|ZP_04445698.1| hypothetical protein COLINT_02409 [Collinsella intestinalis DSM 13280] gi|229809143|gb|EEP44910.1| hypothetical protein COLINT_02409 [Collinsella intestinalis DSM 13280] Length = 453 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 161/451 (35%), Positives = 258/451 (57%), Gaps = 18/451 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +F++++GCQMN++DS R+ + S G +S DAD+++ TC +RE A ++Y Sbjct: 10 KTYFIRTFGCQMNLHDSERVSGLLDSCGCLVASSPADADIVIFMTCCVREAADTRLY--- 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G+ + K+ G ++ V GC+AQ +GE +L V+V+ G + + +LL A Sbjct: 67 GQCSSCKSLPASPSGKRVIAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVADLLADA- 125 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 D D+ V ++ + + D ++R+ A++ I GC+ FC++C+VPY RG E Sbjct: 126 ----FADGDHHVRVEEIDTGAATDMPWHRETAYHAWVPIMTGCNNFCSYCIVPYVRGREK 181 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + ++VDE L+ GV ITLLGQNVN++ G+ D + F++LL + + G+ R+ Sbjct: 182 SRPMDEIVDEVTGLVRQGVRSITLLGQNVNSY-GRDHDHDP-RFAELLRRVGD-TGIERI 238 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 +T+SHP+D+ I A ++ +MP LHL VQSGS RILK MNR++T +Y ++ R+R Sbjct: 239 YFTSSHPKDLLPETIDAMAEVPAVMPQLHLAVQSGSSRILKLMNRKYTREQYLDLVQRVR 298 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P+IA+++D IVGFPGE ++DF T+ LVD+ +AQAF+F YS R GTP + +++ Sbjct: 299 DRIPNIALTTDIIVGFPGEAEEDFEQTVSLVDEAKFAQAFTFIYSKREGTPAAKIVDPTP 358 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN- 441 +V ER L K + + FN + + +LIE K+ L G+SPW Q+V Sbjct: 359 RSVIQERFDRLVKHVEQTAFDFNQGSLDTTVPMLIEGTSKKDPNVLQGKSPWNQTVHCPV 418 Query: 442 ----SKNHNIGDIIKVRITDVKISTLYGELV 468 IG +I V + + L G V Sbjct: 419 PAGVDPTTLIGKVIDVHVDTARTWYLAGASV 449 >gi|261414864|ref|YP_003248547.1| RNA modification enzyme, MiaB family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371320|gb|ACX74065.1| RNA modification enzyme, MiaB family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326764|gb|ADL25965.1| tRNA-i(6)A37 modification enzyme MiaB [Fibrobacter succinogenes subsp. succinogenes S85] Length = 440 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 168/460 (36%), Positives = 262/460 (56%), Gaps = 37/460 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + +YGCQMN YDS + G N+ +DAD+I++NTC +REKA E + Sbjct: 2 KKYHLATYGCQMNEYDSAMIAQELDMCGCVETNNQEDADIIIVNTCSVREKAEETAIVNI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++ L+ K+ D+ VVV GC+A+ G E+L+R VN +VGP Y ++PELL Sbjct: 62 SKLKYLR----KKNPDVKVVVCGCMAKNRGPELLKRLKNVNYIVGPDQYRKIPELL---- 113 Query: 145 FGKRVVDTDYSVEDKFERLSIVD-------GGYNR-KRGVTAFLTIQEGCDKFCTFCVVP 196 FG D + ++ I + G Y + + V+AF+ IQ GC+K C++C+VP Sbjct: 114 FG----DAQSPLHKTHHKMFIDEDRDENYLGEYAKLQNDVSAFVAIQRGCNKRCSYCIVP 169 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 Y RG E R + V+ E ++ D G+ E+ LLGQ VNA++ D F+ LL +SE Sbjct: 170 YLRGPEKYRDMDDVLTEVKRAADKGITEVMLLGQTVNAYKTPNAD-----FTTLLTKVSE 224 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I G+ R+R+T+ HPR ++ LI + + Y H+P+QSGSD ILK M R+H +Y Sbjct: 225 IGGIKRIRFTSPHPRHYTNELIDVLLNNPKVCHYAHIPLQSGSDAILKKMRRQHNMEQYM 284 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +I+++RS P AIS+D I GF GETD+DF T+ + + A+ F YSPR GT Sbjct: 285 TVIEQLRSKDPYYAISTDVICGFVGETDEDFEQTIKAFEACQFDTAYMFIYSPRKGTESF 344 Query: 377 N---MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG--KEKGKLVGR 431 N +L +++ + RL+ LQ + + N +G+ E+L+E HG ++K +LVG+ Sbjct: 345 NEAEILTPEEKSARHSRLVELQNAI---TLKRNQMMIGRTEEILVE-HGSTRDKTELVGK 400 Query: 432 SPWLQSVVLNSKNHNI---GDIIKVRITDVKISTLYGELV 468 + + V+ + I GD +KV+I D++ TL G LV Sbjct: 401 TDNFKKVIFKPEEGRIIKPGDYVKVKIDDIRGWTLRGTLV 440 >gi|87302974|ref|ZP_01085778.1| hypothetical protein WH5701_07366 [Synechococcus sp. WH 5701] gi|87282470|gb|EAQ74429.1| hypothetical protein WH5701_07366 [Synechococcus sp. WH 5701] Length = 474 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 175/458 (38%), Positives = 262/458 (57%), Gaps = 30/458 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM + GY+ + ADL++ NTC IR+ A +KVYS+LGR Sbjct: 24 YWITTFGCQMNKADSERMAGILEGMGYQPGSDEHSADLVLYNTCTIRDNAEQKVYSYLGR 83 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + L +VVAGCVAQ EGE +LRR P +++V+GPQ RL LLE+ G Sbjct: 84 ----QAQRKRTNPHLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDTLLEQVASG 139 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++VV T E ++ R V A++ + GC++ CT+CVVP RG E SRS Sbjct: 140 QQVVAT--GEHHILEDITTA----RRDSQVCAWVNVIYGCNERCTYCVVPSVRGKEQSRS 193 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260 + E L + G EITLLGQN++A+ G+ L G + T +DLL+ + ++ G+ Sbjct: 194 PGAIRLEMEGLAERGFKEITLLGQNIDAY-GRDLPGITPQGRRQHTLTDLLHHVHDVAGI 252 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHPR ++ LI A +L L + H+P QSG D +LK+M R +T YR+I++ Sbjct: 253 ERIRFATSHPRYFTERLIDACAELPKLCEHFHIPFQSGDDDVLKAMARGYTVDRYRRILE 312 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR PD AIS+D IV FPGE+D +R T+ L++ IG+ Q + YSPR TP ++ + Sbjct: 313 RIRERMPDAAISADVIVAFPGESDAQYRRTLALIEAIGFDQVNTAAYSPRPNTPAADWPD 372 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRS------- 432 Q+ E VK ERL L + ++ +G+I +VL+E + ++ G+ +GR+ Sbjct: 373 QLPEAVKVERLQELNALVERTARQRSERYLGRIEQVLVEGTNPRDPGQRMGRTRTNRLTF 432 Query: 433 -----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 P L GD++ VRI V+ +L G Sbjct: 433 FPDLAPSRSPAELEGGIIQPGDLVNVRIEKVRAFSLTG 470 >gi|309811287|ref|ZP_07705076.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dermacoccus sp. Ellin185] gi|308434769|gb|EFP58612.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dermacoccus sp. Ellin185] Length = 512 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 165/455 (36%), Positives = 265/455 (58%), Gaps = 46/455 (10%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM------DDADLIVLNTCHIREKAAEKV 80 + V+++GCQMNV+DS R+ + GY ++ ++ DL+V NTC +RE AA K+ Sbjct: 7 YEVRTHGCQMNVHDSERISGLLEQAGYTDFAALPETERSENPDLVVFNTCAVRENAANKL 66 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 Y LG +R K++ + + V GC+AQ + I+ R+P V+VV G LP LL Sbjct: 67 YGNLGHLRPTKDATPG----MQIAVGGCLAQKDRATIVERAPWVDVVFGTHNVGSLPALL 122 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYT 198 +RAR + + VE E L + +R + +++I GC+ CTFC+VP Sbjct: 123 DRARH-----NAEAQVE-ILESLEVFPSTLPTRRDSAYSGWVSISVGCNNTCTFCIVPAL 176 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEI 257 RG E R +++ E + L+ GV EITLLGQNVN + G++ G++ FS LL + EI Sbjct: 177 RGKEKDRRPGEILAEVKALVAQGVVEITLLGQNVNTY---GVEFGDRHAFSKLLRACGEI 233 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +GL R+R+T+ HP +D +I A + +MP LH+P+QSGSD++LK M R + + ++ Sbjct: 234 EGLERVRFTSPHPAAFTDDVIDAMAETPNVMPSLHMPLQSGSDKVLKDMRRSYRSKKFLG 293 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 II+++R PD AI++D IVGFPGET++DF+ T+D+V+ ++ AF+F+YS R GTP + Sbjct: 294 IIEKVREKMPDAAITTDIIVGFPGETEEDFQGTLDVVEASRFSSAFTFQYSIRPGTPAAT 353 Query: 378 MLEQVDENV---KAERLLCLQKKL-----REQQVSFNDACVGQIIEVLIE----KHGKEK 425 M +Q+ + V + ERL+ LQ+++ REQ+ G+ +EVL+ + E Sbjct: 354 MDDQIPKEVVQERFERLIELQERVSWAGNREQE--------GRTVEVLVAPSEGRKDAET 405 Query: 426 GKLVGRSPWLQ----SVVLNSKNHNIGDIIKVRIT 456 ++ GR+ + +V +K GD++ V +T Sbjct: 406 HRMSGRARDNRLVHFAVPEGAKRPRPGDMVTVDVT 440 >gi|313901066|ref|ZP_07834554.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium sp. HGF2] gi|312954024|gb|EFR35704.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium sp. HGF2] Length = 478 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 170/448 (37%), Positives = 257/448 (57%), Gaps = 16/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++++++YGCQ N DS + + + V +DADLI++NTC IR+ A +KV + Sbjct: 43 KKYYLRTYGCQANERDSETLAGILEEMNFTAVEHPEDADLILMNTCAIRKNAEDKVLGEI 102 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DLL + GC+AQ E ++L VN++ G +RLPELL Sbjct: 103 GSLKRLKRKK----PDLLFGLCGCMAQEEDVVAKLLETYRHVNLIFGTHNIHRLPELLYD 158 Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G R V+ D E L + G ++ A++ I GCDKFCT+C+VPYTRG Sbjct: 159 VMVNGNRSVEVLSKEGDVIENLPVRRFGKHK-----AWVNIMYGCDKFCTYCIVPYTRGK 213 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR + +++E R L G EITLLGQNVN++ GK L E F+ LL ++I G+ Sbjct: 214 ERSRMMEDILEEVRILKAEGFKEITLLGQNVNSY-GKDLHMEG-GFAGLLEETAKI-GIE 270 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP D +D +I + +MP++HLPVQSG ILK M RR+T +Y + + Sbjct: 271 RIRFTTSHPWDFTDEMIDVIARYENIMPFIHLPVQSGDSDILKIMGRRYTREQYLTLFHK 330 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P AIS+D IVGFP ET++ F+ T+ LVD+ + AF+F YSPR GTP ++M + Sbjct: 331 IKERIPHCAISTDIIVGFPNETEEQFQNTLSLVDECRFDNAFTFIYSPREGTPAASMADN 390 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVL 440 V+ VK RL L ++ N+ +G +++VL++ K+ ++ G + + V Sbjct: 391 VELAVKQRRLQELNERWNLYAREKNEEYLGSVVKVLVDGASKKNPEVFSGYTETNKLVNF 450 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 GDI+ V+IT K +L GE + Sbjct: 451 RRTTAQSGDIVSVKITACKTFSLDGEQI 478 >gi|313140558|ref|ZP_07802751.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313133068|gb|EFR50685.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 480 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 157/403 (38%), Positives = 247/403 (61%), Gaps = 29/403 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82 F+V + GCQMNV+DS R+ + GY E + D DLI++NTC +RE AAE++Y Sbjct: 27 FYVHTLGCQMNVHDSERIAGVLEDDGYIPATEEQAADKDVDLIIMNTCAVRENAAERMYG 86 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +LK + ++ + + GC+AQ + + I +++P V+ V G + LP LL++ Sbjct: 87 TIGLWADLKRTH----PNMQIAIGGCMAQLDRKRIAQKAPWVDAVFGTKNIGSLPRLLDQ 142 Query: 143 ARFGKRVVDTDYSVEDKFE----RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 AR V DK + +L + R V+++++I GC+ CTFC+VP T Sbjct: 143 ARMAGTC---QVEVADKLDYFPSQLPVA-----RASKVSSWVSISIGCNNTCTFCIVPTT 194 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG E R ++ E R+ +D G E+TLLGQNVN++ G G+ G++ FS LL + +I+ Sbjct: 195 RGKEHDRRPGDILAEIRRCVDEGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGDIE 252 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R+T+ HP +D +I A + +M LH+P+QSGSD+IL++M R + + ++ I Sbjct: 253 GLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHMPLQSGSDKILRAMRRSYRSAKFLDI 312 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + ++R PD IS+D IVGFPGETD+DF ATMD+V + + AF+F+YSPR GTP + M Sbjct: 313 LRKVREAMPDAQISTDIIVGFPGETDEDFEATMDVVRQARFQSAFTFEYSPRPGTPAAEM 372 Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI 418 EQV V E RL+ LQ+++ E++++ + G+ +EV+I Sbjct: 373 -EQVPHEVVQERFDRLVKLQEQITEEELAKFE---GRDVEVMI 411 >gi|302866042|ref|YP_003834679.1| RNA modification enzyme, MiaB family [Micromonospora aurantiaca ATCC 27029] gi|302568901|gb|ADL45103.1| RNA modification enzyme, MiaB family [Micromonospora aurantiaca ATCC 27029] Length = 499 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 159/417 (38%), Positives = 247/417 (59%), Gaps = 21/417 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYS 82 P+ + V++YGCQMNV+DS R+ + GY R D+ D++V NTC +RE A ++Y Sbjct: 9 PRTYQVRTYGCQMNVHDSERISGLLEDAGYVRAAEADEQPDVVVFNTCAVRENADNRLYG 68 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LG +R +K K G + + V GC+AQ + +I+R++P V+VV G LP LL+R Sbjct: 69 NLGHLRPVK---AKHPG-MQIAVGGCLAQKDRGDIVRKAPWVDVVFGTHNIGSLPALLDR 124 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRG 200 AR + VE E L + +R T +++I GC+ CTFC+VP RG Sbjct: 125 ARH-----NAAAEVE-ILESLEVFPSTLPTRRESTYAGWVSISVGCNNTCTFCIVPSLRG 178 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259 E R ++ E R L+D+GV E+TLLGQNVN++ G++ G++ F LL + +I G Sbjct: 179 KEKDRRPGDILSEVRALVDSGVLEVTLLGQNVNSY---GVEFGDRYAFGKLLRACGDIDG 235 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+T+ HP+D +D +I A + + LH+P+QSGSD +L++M R + + Y II Sbjct: 236 LERVRFTSPHPKDFTDDVIAAMAETPNVCHSLHMPLQSGSDDVLRAMRRSYRSERYLGII 295 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +++R+ PD AI++D IVGFPGET+ DF T+D+V + ++ AF+F+YS R GTP + M Sbjct: 296 EKVRAAMPDAAITTDIIVGFPGETEADFARTLDVVREARFSSAFTFQYSKRPGTPAATMD 355 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432 Q+ + V ER L + E + N VG+ +EVL+ + + G++ GR+ Sbjct: 356 GQLPKQVVQERYERLIACVEEITWAENKKLVGETVEVLVAVGEGRKDERTGRMSGRA 412 >gi|78186125|ref|YP_374168.1| hypothetical protein Plut_0237 [Chlorobium luteolum DSM 273] gi|123743738|sp|Q3B6A6|MIAB_PELLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|78166027|gb|ABB23125.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chlorobium luteolum DSM 273] Length = 446 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 167/443 (37%), Positives = 248/443 (55%), Gaps = 14/443 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +RF+++++GCQMN DS + + G+ R ++ DAD+++LNTC +RE A EK+ L Sbjct: 5 RRFYIQTFGCQMNEADSGIIARVLLDAGFRRADTEQDADVVLLNTCAVRENAVEKIAHLL 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ K R L V V GCV Q + EE+ R P ++ + GP +Y RLP L++ A Sbjct: 65 EHLKGAKKRR----KTLQVGVLGCVPQHQREEMFSRFPAIDFIAGPDSYRRLPSLIDDAA 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 R D+ + + + V G ++AF+ + GC+ C FCVVP+TRG E S Sbjct: 121 SAVRSAMLDFDPSETYVGIRQVREGR-----ISAFIPVMRGCNNMCAFCVVPFTRGRERS 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + L+ V EAR+L + G EITLLGQNVN++ TFS LL +++ VR+R Sbjct: 176 QPLAMVTGEARELAEAGYREITLLGQNVNSYSDPA---SGATFSALLDAVALAAPDVRIR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP+D+S LI + ++HLPVQSGSD +L+ MNR H EY + I IR Sbjct: 233 FTTSHPKDISVGLIDTIARRPNICRHVHLPVQSGSDSVLRRMNRGHGISEYLEKIRIIRD 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVD 383 P + +S+D I GF GE ++D RAT+DL+ + + AF F YS R GT + L + V Sbjct: 293 ALPGVTLSTDIIAGFCGEREEDHRATLDLLRTVRFDAAFMFHYSTREGTLAARTLPDDVA 352 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442 E K RL + +E N VG + EVL E + G+L+GR+ ++VV + Sbjct: 353 ETDKKRRLQEIIDLQQEISAENNRRQVGTVAEVLAESESRRSPGRLLGRTDGNRAVVFDR 412 Query: 443 KNHNIGDIIKVRITDVKISTLYG 465 GD+++VR+T +TL G Sbjct: 413 GECMPGDLVRVRLTSSTSATLSG 435 >gi|312129884|ref|YP_003997224.1| tRNA-i(6)a37 thiotransferase enzyme miab [Leadbetterella byssophila DSM 17132] gi|311906430|gb|ADQ16871.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leadbetterella byssophila DSM 17132] Length = 464 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 167/447 (37%), Positives = 257/447 (57%), Gaps = 11/447 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + S GY + + +ADLI+LNTC IR+ A ++V + L Sbjct: 25 KKLYIESYGCQMNFADSEVVASILRSNGYSTTSDVVEADLILLNTCAIRDNAEQRVRNRL 84 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ NS K +L + V GC+A+ + L +V++VVGP Y LP LL Sbjct: 85 ----SILNSNKKRNPELKIGVLGCMAERLKTKFLEEEKMVDLVVGPDAYRDLPNLLAEVE 140 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + V+ S E+ + ++ + N GV+AF++I GC+ C+FCVVP+TRG E S Sbjct: 141 EGHKAVNVFLSREETYADITPIRLDSN---GVSAFISIMRGCNNMCSFCVVPFTRGRERS 197 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + EA++L D G E+TLLGQNV+++ K + E+ TF++LL ++ I +R+R Sbjct: 198 RDPYSIEKEAKELFDQGYREVTLLGQNVDSYLWKS-ETEQFTFANLLEKIALIHPDLRIR 256 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++TSHP+D++D ++ D + Y+HLP QSGS RIL+ MNR + Y IDRIR Sbjct: 257 FSTSHPKDITDEVLYTMKKYDNICNYIHLPAQSGSSRILELMNRTYDREWYLGKIDRIRE 316 Query: 325 VR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382 + + IS D I GF ET++D + T+ L+D + + + F YS R GTP + E V Sbjct: 317 ILGEECGISHDLIAGFCTETEEDHQDTLTLMDYVKFDYGYMFYYSERPGTPAAKKYEDDV 376 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN 441 E VK RL + K +E + N VG++ +LIE K + L GR+ + VV Sbjct: 377 PEEVKKRRLNEIIAKQQEHSLERNQMTVGKVYRILIEGESKRSDEDLCGRTDQNKMVVFP 436 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 K++ G+ + VRI +TL GE+V Sbjct: 437 RKHYKKGEYVNVRILSCSAATLKGEIV 463 >gi|333024041|ref|ZP_08452105.1| putative tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. Tu6071] gi|332743893|gb|EGJ74334.1| putative tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. Tu6071] Length = 484 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 169/445 (37%), Positives = 255/445 (57%), Gaps = 29/445 (6%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDD---ADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 MNV+DS R+ + GY R + AD++V NTC +RE A ++Y LGR+ K Sbjct: 1 MNVHDSERLAGLLEGAGYVRAPEGAEDGGADVVVFNTCAVRENADNRLYGNLGRLAPKKT 60 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VD 151 R + + V GC+AQ + + I+ R+P V+VV G +LP LLERAR + V+ Sbjct: 61 ERP----GMQIAVGGCLAQKDRQTIVDRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVE 116 Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211 S+E L R+ A++++ GC+ CTFC+VP RG E R ++ Sbjct: 117 IAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDRRPGDIL 171 Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 E L+ GV EITLLGQNVNA+ G D G++ FS LL + I+GL R+R+T+ HP Sbjct: 172 AEVEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGGIEGLERVRFTSPHP 228 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 RD +D +I A + +MP LH+P+QSGSD +L++M R + Y II+++R+ PD A Sbjct: 229 RDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQDRYLGIIEKVRAAIPDAA 288 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---K 387 IS+D IVGFPGET++DF T+ +V + +A AF+F+YS R GTP + M Q+ + V + Sbjct: 289 ISTDIIVGFPGETEEDFEQTLHVVREARFAAAFTFQYSKRPGTPAAEMENQIPKEVVQKR 348 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQSVVLNSK 443 ERL+ LQ+++ ++ N VG+ ++V++ E G++ G +L GR+P + V Sbjct: 349 YERLVALQEEISWEE---NKKLVGRTLDVMVAEGEGRKDGATQRLSGRAPDNRLVHFTKP 405 Query: 444 NHNI--GDIIKVRITDVKISTLYGE 466 + GD++ V IT L E Sbjct: 406 QEPVRPGDVVTVDITYAAPHHLLAE 430 >gi|325672731|ref|ZP_08152427.1| tRNA-I(6)A37 thiotransferase [Rhodococcus equi ATCC 33707] gi|325556608|gb|EGD26274.1| tRNA-I(6)A37 thiotransferase [Rhodococcus equi ATCC 33707] Length = 505 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 153/418 (36%), Positives = 247/418 (59%), Gaps = 24/418 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++YGCQMNV+DS R+ + GY + + ADL+V NTC +RE A K+Y L Sbjct: 12 YEVRTYGCQMNVHDSERLSGLLEDAGYTKAVPGEQADLVVFNTCAVRENADNKLYGNLSH 71 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + +K R + + V GC+AQ + + +++++P V+VV G LP LLERAR Sbjct: 72 LAPVKEERP----GMQIAVGGCLAQKDRDTVVKKAPWVDVVFGTHNIGSLPALLERARHN 127 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ V+ S+E L R+ +++I GC+ CTFC+VP RG E+ R Sbjct: 128 EQAQVEILESLEAFPSTLPA-----KRESAYAGWVSISVGCNNTCTFCIVPSLRGKEVDR 182 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLV 261 ++ E + L++ GV E+TLLGQNVN++ D E + F+ LL + +I GL Sbjct: 183 RPGDILAEVQALVNEGVLEVTLLGQNVNSYGVSFADPELPRDRGAFAKLLSACGQIDGLE 242 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP + +D +I+A + P LH+P+QSGSDR+LK+M R + + ++ II++ Sbjct: 243 RVRFTSPHPAEFTDDVIEAMATTPNVCPQLHMPLQSGSDRVLKAMRRSYRSAKFLGIIEK 302 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ P AI++D IVGFPGET++DF+AT+D+V + + AF+F+YS R GTP + M Q Sbjct: 303 VRAAMPHAAITTDIIVGFPGETEEDFQATLDVVRQARFTSAFTFQYSKRPGTPAAEMDGQ 362 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432 + + V E RL+ LQ+++ ++ N VG +E+L+ + E ++ GR+ Sbjct: 363 LPKAVVQERYDRLIALQEEITLEE---NRKLVGTEVELLVTAGDGRKNAETARMSGRA 417 >gi|212715618|ref|ZP_03323746.1| hypothetical protein BIFCAT_00517 [Bifidobacterium catenulatum DSM 16992] gi|212660985|gb|EEB21560.1| hypothetical protein BIFCAT_00517 [Bifidobacterium catenulatum DSM 16992] Length = 484 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 159/400 (39%), Positives = 246/400 (61%), Gaps = 23/400 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82 F+V + GCQMNV+DS R+ + + GY E D DLIV+NTC +RE AAE++Y Sbjct: 31 FYVHTLGCQMNVHDSERISGVLEADGYVPATEEQYLDHDVDLIVMNTCAVRENAAERMYG 90 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G L R ++ +L + V GC+AQ + E+I +++P V+ V G + LP+LL++ Sbjct: 91 TIG----LWAERKRQRPNLQIAVGGCMAQLDREKIAKKAPWVDAVFGTKNIGSLPQLLDQ 146 Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 AR G V + +L +R V++++ I GC+ CTFC+VP TRG Sbjct: 147 ARIEGHAQVKVKEELNYFPSQLPT-----DRASKVSSWVAISVGCNNTCTFCIVPTTRGK 201 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E R ++ E R+ +D G E+TLLGQNVN++ G G+ G++ FS LL + EI+GL Sbjct: 202 EHDRRPGDILAEIRQCVDEGAKEVTLLGQNVNSF-GYGI-GDRFAFSKLLRACGEIEGLE 259 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + ++ I+ + Sbjct: 260 RVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRK 319 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR PD IS+D IVGFPGET++DF+ T+ +V++ +A AF+F YSPR GTP + M EQ Sbjct: 320 IREAMPDAQISTDIIVGFPGETEEDFQETLRVVEEARFASAFTFIYSPRPGTPAAEM-EQ 378 Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 V +V + ERL+ LQ+++ E+ + + G+ +EV++ Sbjct: 379 VPHDVVQDRFERLVALQERITEENLKTFE---GRDVEVMV 415 >gi|302338928|ref|YP_003804134.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Spirochaeta smaragdinae DSM 11293] gi|301636113|gb|ADK81540.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Spirochaeta smaragdinae DSM 11293] Length = 440 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 156/448 (34%), Positives = 258/448 (57%), Gaps = 20/448 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RFF+++YGCQMN+ +S M + G+ ++AD+++LNTC +R+ A ++++ +G Sbjct: 4 RFFLETYGCQMNIAESNAMTLQLEALGWSAAERPEEADIVLLNTCAVRQTAEDRIWGRIG 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ER 142 + LK SR D ++V GC+A+ GEEI++ S V+ V+G +L E+ Sbjct: 64 YYKFLKESR-----DFTLIVTGCMAERLGEEIIKESKAVDYVLGTFQKRKLSEIACGHGE 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + D S +FE + G + AFL I GC+ FC++C+VPY RG E Sbjct: 119 THAPVKADDLSVSPHFQFEPYHLAKGAFK------AFLPIMHGCNNFCSYCIVPYVRGRE 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISRS + E +L + GV EITLLGQNVN++ + F DLL ++ + +R Sbjct: 173 ISRSPEDIFREIERLEEKGVREITLLGQNVNSYNWN----DTLRFPDLLAKIASMTDSIR 228 Query: 263 -LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R+ +SHP+D+ LI+ + + + ++HLPVQ GS+ +L+ MNR++T Y +++ Sbjct: 229 WIRFMSSHPKDIPQELIRVIAEHETVCNHIHLPVQHGSNSVLRRMNRKYTREHYFDLVEM 288 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +RSV P +++S+D ++GFPGE+++DF T+DLV ++G+ AF++ Y+PR GT +M EQ Sbjct: 289 MRSVIPGLSLSTDLMIGFPGESEEDFELTLDLVRQVGFDDAFTYYYNPREGTAAYDMAEQ 348 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVL 440 V VK +RL L + RE + A +G VL+E+ K++ G+L+ R+ + V Sbjct: 349 VPHEVKLDRLKTLIELQREISFARRKARIGDSERVLVEQRAKKREGELLARTNRNEMVAF 408 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V + + +T GE+V Sbjct: 409 PGGEGLIGSFVPVVLKTLHGNTFRGEVV 436 >gi|229890675|sp|Q0S1P3|MIAB_RHOSR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 505 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 155/428 (36%), Positives = 251/428 (58%), Gaps = 27/428 (6%) Query: 18 VDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 +DQ P R + V++YGCQMNV+DS R+ + GY + + DL+V NTC +RE A Sbjct: 4 IDQ--TPHRSYEVRTYGCQMNVHDSERLSGLLEDAGYTKAAAGQAPDLVVFNTCAVRENA 61 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 K+Y L + K + D+ + V GC+AQ + + +++++P V+VV G L Sbjct: 62 DNKLYGNLSHLAPAK----ERNPDMQIAVGGCLAQKDRDVVVKKAPWVDVVFGTHNIGSL 117 Query: 137 PELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 P LL+RAR +R V+ ++E L R+ +++I GC+ CTFC+V Sbjct: 118 PALLDRARHNQRAEVEILEALEAFPSTLPA-----KRESAYAGWVSISVGCNNTCTFCIV 172 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLL 251 P RG E+ R ++ E + L++ GV E+TLLGQNVNA+ D + + F+ LL Sbjct: 173 PALRGKEVDRRPGDILAEVQALVNEGVVEVTLLGQNVNAYGVSFADPDQPRDRGAFAALL 232 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 + +I GL R+R+T+ HP + +D +I+A + + P LH+P+QSGSDR+LK+M R + Sbjct: 233 RACGQIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLKAMRRSYR 292 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + IID++R+ P AI++D IVGFPGET++DF+ T+D+V + + A++F+YS R Sbjct: 293 KSRFLGIIDKVRTAMPHAAITTDIIVGFPGETEEDFQDTLDVVRQARFTSAYTFQYSKRP 352 Query: 372 GTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKE 424 GTP + M EQ+ + V + ERL+ LQ+++ ++ N VG +E+L+ + E Sbjct: 353 GTPAAEMDEQLPKAVVQERYERLIALQEQITLEE---NQKLVGAEVELLVAAGEGRKNAE 409 Query: 425 KGKLVGRS 432 ++ GR+ Sbjct: 410 TARMSGRA 417 >gi|149917237|ref|ZP_01905736.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Plesiocystis pacifica SIR-1] gi|149821844|gb|EDM81238.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Plesiocystis pacifica SIR-1] Length = 486 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 166/458 (36%), Positives = 267/458 (58%), Gaps = 29/458 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R +++++GCQMN D+ + G+ RV S +ADL+++NTC +REKA ++VY G Sbjct: 37 RVYMETFGCQMNEADTALVLGRLRQDGWVRVTSPAEADLVLVNTCAVREKAEDRVY---G 93 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R L + R DL++ + GC+A+ +++ R+P + +V GP +Y + L +A Sbjct: 94 RTTQLLDHR-NRNPDLVIGITGCMAEHLRDKLETRAPHIQLVAGPDSYRNIAALARKAIT 152 Query: 146 GKRVVDTDYSVEDKFERLSIV---------DGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 G+R VD + +E L V + +R GV+ ++TIQ GCDKFCTFCVVP Sbjct: 153 GERAVDVHLDKAEVYEGLDPVIRSPGDDGSEAATSRDDGVSGYVTIQRGCDKFCTFCVVP 212 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN--AWRGKGLDGEKCTFSDLLYSL 254 +TRG E +V+ +AR+L + G E+TLLGQ VN AW E +F++LL ++ Sbjct: 213 FTRGRERGVPPREVLRQARRLAEAGYRELTLLGQTVNSYAW-------EDVSFAELLRAV 265 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 + ++G+ R+R+T+ +P D SD LI+ + PY+H+PVQ+G+D +L+ M R +T + Sbjct: 266 AAVEGIERIRFTSPYPVDFSDELIEVLATEPKVCPYVHMPVQAGADVVLERMRRGYTLAD 325 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 YR+++ ++R+ P IAIS+D +VGF GET+ D T+ L++++ + AF F YS R T Sbjct: 326 YRELVRKLRAAVPHIAISTDIMVGFCGETEADHAETLALMEEVQFDFAFMFAYSDREITY 385 Query: 375 GS-NMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 S +++ V + K RL + LQ+K +++ A VGQ VL+ K KL+G Sbjct: 386 ASKKLVDDVPQETKLRRLREVIELQEKHTRARLA---ARVGQRDRVLVVNTSKRGDKLLG 442 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 R+P Q V+L G+ + V IT +L+GEL+ Sbjct: 443 RTPTFQKVLLPLGCAAPGEFVDVTITGTTGHSLFGELL 480 >gi|148269423|ref|YP_001243883.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga petrophila RKU-1] gi|170288080|ref|YP_001738318.1| RNA modification protein [Thermotoga sp. RQ2] gi|229891014|sp|A5IJD4|MIAB_THEP1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229891017|sp|B1L8F3|MIAB_THESQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|147734967|gb|ABQ46307.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga petrophila RKU-1] gi|170175583|gb|ACB08635.1| RNA modification enzyme, MiaB family [Thermotoga sp. RQ2] Length = 443 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 170/448 (37%), Positives = 263/448 (58%), Gaps = 24/448 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF++K++GCQMN DS M + +G+ ++ ++AD++++NTC +R K+ EK YS LG Sbjct: 2 RFYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 ++ +K R L+V VAGCVA+ E E++L R + V+G + ++ E ++RA Sbjct: 62 QMLKIKRKR-----KLVVGVAGCVAEKEREKLLERG--ADFVLGTRAVLKVTEAVKRALQ 114 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G++V + +++ L + R A++TI GCD+FCT+C+VPYTRG E SR Sbjct: 115 GEKVALFEDHLDEYTHELPRI-----RSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSR 169 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264 + +++E R+L G E+T LGQNV+A+ GK L DG + + LL S+I+G+ R+ Sbjct: 170 PMEDILEEVRELAKQGYREVTFLGQNVDAY-GKDLKDG--SSLAKLLEEASKIEGIERIW 226 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TS+P D SD LI+ + +HLPVQSGS+RILK MNR +T EY +++RIRS Sbjct: 227 FLTSYPTDFSDELIEVIARNPKVAKSVHLPVQSGSNRILKLMNRSYTKEEYLALLERIRS 286 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVD 383 PD+AISSD IVGFP ET++DF T+DLV+K + + YSPR GT + ++V Sbjct: 287 KVPDVAISSDIIVGFPTETEEDFMETIDLVEKAQFERLNLAIYSPRKGTVAWKHYKDEVP 346 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 K R L+ LQK++ + N+ G+ + V++E K G GR + + Sbjct: 347 YEEKVRRMQFLMNLQKRINRK---LNERYKGKTVRVIVEAQAK-NGLFYGRDIRNKIIAF 402 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG V+I + LYG++V Sbjct: 403 EGEEWMIGRFADVKIEKITAGPLYGKVV 430 >gi|289706447|ref|ZP_06502805.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus SK58] gi|289556942|gb|EFD50275.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Micrococcus luteus SK58] Length = 513 Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 161/446 (36%), Positives = 257/446 (57%), Gaps = 30/446 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + S GY ADL+V NTC +RE A ++Y LG Sbjct: 26 YEVRTFGCQMNVHDSERISGLLESTGYAPAAEDAQADLVVFNTCAVRENADNRLYGNLGN 85 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R +K++ + + V GC+AQ + I R++P V+VV G LP LLER+R Sbjct: 86 LRAVKDAHP----GMQIAVGGCLAQKDQAAIQRKAPWVDVVFGTHNIGSLPVLLERSRH- 140 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + +E E L + KR T +++I GC+ CTFC+VP RG E Sbjct: 141 ----NAEAEIE-ILESLEVFPSTLPTKRDSTHSGWVSISVGCNNTCTFCIVPSLRGKEKD 195 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263 R +++ E + L+D G E+TLLGQNVN + G++ G++ F+ LL + +I+GL R+ Sbjct: 196 RRPGEILAEVQALVDAGAVEVTLLGQNVNTY---GVEFGDRGAFAKLLRACGQIEGLERV 252 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP +D +I A + +MP LH+P+QSGSD +LK+M R + + + I++++R Sbjct: 253 RFTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRSKRFLGILEKVR 312 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P AI++D IVGFPGET++DF+ TM +V+ ++ AF+F+YS R GTP M +QV Sbjct: 313 ERIPHAAITTDIIVGFPGETEEDFQDTMRVVEASRFSSAFTFQYSIRPGTPAGEMADQVP 372 Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQ 436 + V + ERL+ LQ ++ ++++ VG E+L+ E+G+L GR+ + Sbjct: 373 KAVVQERYERLVALQDRISAEEMA---TLVGTRQELLVTADSGTKAAERGRLSGRARDNR 429 Query: 437 ----SVVLNSKNHNIGDIIKVRITDV 458 SV + GD + V +T+ Sbjct: 430 LVHFSVPAGAPTPRPGDFVSVTVTEA 455 >gi|224283403|ref|ZP_03646725.1| hypothetical protein BbifN4_06194 [Bifidobacterium bifidum NCIMB 41171] Length = 479 Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 157/403 (38%), Positives = 247/403 (61%), Gaps = 29/403 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82 F+V + GCQMNV+DS R+ + GY E + D DLI++NTC +RE AAE++Y Sbjct: 26 FYVHTLGCQMNVHDSERIAGVLEDDGYIPATEEQAADKDVDLIIMNTCAVRENAAERMYG 85 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +LK + ++ + + GC+AQ + + I +++P V+ V G + LP LL++ Sbjct: 86 TIGLWADLKRTH----PNMQIAIGGCMAQLDRKRIAQKAPWVDAVFGTKNIGSLPRLLDQ 141 Query: 143 ARFGKRVVDTDYSVEDKFE----RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 AR V DK + +L + R V+++++I GC+ CTFC+VP T Sbjct: 142 ARMAGTC---QVEVADKLDYFPSQLPVA-----RASKVSSWVSISIGCNNTCTFCIVPTT 193 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG E R ++ E R+ +D G E+TLLGQNVN++ G G+ G++ FS LL + +I+ Sbjct: 194 RGKEHDRRPGDILAEIRRCVDEGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGDIE 251 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R+T+ HP +D +I A + +M LH+P+QSGSD+IL++M R + + ++ I Sbjct: 252 GLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHMPLQSGSDKILRAMRRSYRSAKFLDI 311 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + ++R PD IS+D IVGFPGETD+DF ATMD+V + + AF+F+YSPR GTP + M Sbjct: 312 LRKVREAMPDAQISTDIIVGFPGETDEDFEATMDVVRQARFQSAFTFEYSPRPGTPAAEM 371 Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI 418 EQV V E RL+ LQ+++ E++++ + G+ +EV+I Sbjct: 372 -EQVPHEVVQERFDRLVKLQEQITEEELAKFE---GRDVEVMI 410 >gi|307720461|ref|YP_003891601.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurimonas autotrophica DSM 16294] gi|306978554|gb|ADN08589.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurimonas autotrophica DSM 16294] Length = 434 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 164/450 (36%), Positives = 254/450 (56%), Gaps = 19/450 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + ++ F+++ GC MN DS M + +GYE +++DADLI++NTC +RE+ K++ Sbjct: 1 MSKKLFIETLGCAMNSRDSEHMIAQLREKEGYETTQNLEDADLILINTCSVRERPVHKLF 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LG + K K G V GC A GEEI++R+P VN V+G + ++ E+L Sbjct: 61 SELGGFKKRKKPSAKIG------VCGCTASHLGEEIIKRAPYVNFVLGARNVSKIGEVLH 114 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + + + ++ D S E F+ R A++ I GCDK CT+C+VP TRG Sbjct: 115 KDKAVEIDINYDES-EFAFDDF--------RTSSYKAYINISIGCDKQCTYCIVPKTRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLLYSLSEIKG 259 EIS +++EA++ +DNG EI LLGQNVN + R + EK F++LL LS+I+G Sbjct: 166 EISIPDDLIINEAKRAVDNGAKEIFLLGQNVNNYGRRFSSSEHEKVNFTELLRRLSKIEG 225 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+T+ HP M D I+ + +H+P+QSGS ++LK M R +T + + Sbjct: 226 LERIRFTSPHPFHMDDEFIEEFAKNPKICKSMHMPLQSGSSKVLKEMKRGYTKEWFLNRV 285 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++RSV PD++IS+D IV FPGE+D+DF T+D++ ++ + Q FSFKYSPR T + Sbjct: 286 QKLRSVCPDVSISTDIIVAFPGESDEDFADTIDVMKQVKFDQIFSFKYSPRPETEAEHFT 345 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 VDE+V ++RL LQ E N +G+ V E K+ + GRS + Sbjct: 346 NVVDEDVASDRLAYLQSLHNELLDEINTKYLGETFRVYFENLNKDNF-VSGRSDNNLVIK 404 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + +G+ V+IT + + L GE+V Sbjct: 405 VKGSEELLGEFRDVKITSIGRTILTGEIVA 434 >gi|257466304|ref|ZP_05630615.1| MIAB protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917461|ref|ZP_07913701.1| tRNA-methylthiotransferase MiaB protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691336|gb|EFS28171.1| tRNA-methylthiotransferase MiaB protein [Fusobacterium gonidiaformans ATCC 25563] Length = 435 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 167/443 (37%), Positives = 255/443 (57%), Gaps = 16/443 (3%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V +YGCQMNV +S +M+ +F + GYE + ++D I LNTC +RE AA ++Y LG + Sbjct: 6 VITYGCQMNVNESAKMKKIFENLGYEITEDIRESDAIFLNTCTVREGAATQIYGKLGELM 65 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFG 146 +K R ++ V GC AQ +G+E+L++ P++++V+G Q RLP+ +E + Sbjct: 66 QVKADR-----GSIIGVTGCFAQEQGKELLKKFPVIDIVMGNQNIGRLPQAIENIENQTE 120 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K VV TD+ ED D G ++ TA + I GC+ FCTFC+VPY RG E S Sbjct: 121 KHVVFTDH--EDDLPPRLDADFGSDQ----TASIAISYGCNNFCTFCIVPYVRGRERSVP 174 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++V + + + G EI LLGQNVN++ +G+ TF+ LL + +++G +R+ Sbjct: 175 LEEIVRDVDQYVKKGAKEIMLLGQNVNSYGHDFKNGD--TFAKLLTEICKVEGDFIVRFV 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + HPRD +D +I+ D + LHLP+QSGS +ILK MNR +T +Y + +I+ Sbjct: 233 SPHPRDFTDDVIEVIAKEDKIAKCLHLPLQSGSSQILKRMNRGYTKEQYLALAHKIQDKI 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 +A+++D IVGFPGET++DF T+++V +I Y AF F YS R GT + M EQ+ E++ Sbjct: 293 SGVALTTDIIVGFPGETEEDFLDTLEIVREINYDNAFMFMYSIRQGTRAATMQEQIPEDI 352 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNH 445 K ERL L + G+ + VL+E K+ K L GR+ + V+ Sbjct: 353 KKERLQRLMDVQARCSYKESQKYQGKTVRVLVEGESKKNKEVLSGRTSTNKIVLFQGPIS 412 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 G + V I + K TLYG+LV Sbjct: 413 LKGSFVDVEIYECKTWTLYGKLV 435 >gi|318060989|ref|ZP_07979710.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces sp. SA3_actG] gi|318077279|ref|ZP_07984611.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces sp. SA3_actF] Length = 484 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 169/445 (37%), Positives = 255/445 (57%), Gaps = 29/445 (6%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDD---ADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 MNV+DS R+ + GY R + AD++V NTC +RE A ++Y LGR+ K Sbjct: 1 MNVHDSERLAGLLEGAGYVRAPEGAEDGGADVVVFNTCAVRENADNRLYGNLGRLAPKKT 60 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-VD 151 R + + V GC+AQ + + I+ R+P V+VV G +LP LLERAR + V+ Sbjct: 61 ERP----GMQIAVGGCLAQKDRQTIVDRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVE 116 Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211 S+E L R+ A++++ GC+ CTFC+VP RG E R ++ Sbjct: 117 IAESLEAFPSTLPT-----RRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDRRPGDIL 171 Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 E L+ GV EITLLGQNVNA+ G D G++ FS LL + I+GL R+R+T+ HP Sbjct: 172 AEVEALVAEGVSEITLLGQNVNAY---GSDIGDREAFSKLLRACGGIEGLERVRFTSPHP 228 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 RD +D +I A + +MP LH+P+QSGSD +L++M R + Y II+++R+ PD A Sbjct: 229 RDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQDRYLGIIEKVRAAIPDAA 288 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---K 387 IS+D IVGFPGET++DF T+ +V + +A AF+F+YS R GTP + M Q+ + V + Sbjct: 289 ISTDIIVGFPGETEEDFEQTLHVVREARFAAAFTFQYSKRPGTPAAEMENQIPKEVVQKR 348 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRSPWLQSVVLNSK 443 ERL+ LQ+++ ++ N VG+ ++V++ E G++ G +L GR+P + V Sbjct: 349 YERLVALQEEISWEE---NKKQVGRTLDVMVAEGEGRKDGATQRLSGRAPDNRLVHFTKP 405 Query: 444 NHNI--GDIIKVRITDVKISTLYGE 466 + GD++ V IT L E Sbjct: 406 QEPVRPGDVVTVDITYAAPHHLLAE 430 >gi|307718683|ref|YP_003874215.1| hypothetical protein STHERM_c09960 [Spirochaeta thermophila DSM 6192] gi|306532408|gb|ADN01942.1| hypothetical protein STHERM_c09960 [Spirochaeta thermophila DSM 6192] Length = 448 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 163/448 (36%), Positives = 265/448 (59%), Gaps = 17/448 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++V++YGCQMN +S + G+ R ++ D+AD++VLNTC +R+ A E++ LG Sbjct: 4 YWVETYGCQMNKAESEALIRDLEEAGWGRASAPDEADVVVLNTCAVRQTAEERIAGRLGY 63 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP---QTYYRLPELLERA 143 R LK G ++V+ GC+A+ EE+L P V+VVVG +++ RL L ERA Sbjct: 64 YRYLKKH-----GRFVLVLMGCMAERMKEEVLEAFPHVDVVVGTFQKKSFVRL--LRERA 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + ED++ I G G AF+ I GC+ FC++C+VPY RG E+ Sbjct: 117 EDLTLLQQLLLTEEDEYSFEKIHHSG----PGFKAFVPIMHGCNNFCSYCIVPYVRGREV 172 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262 SR S++ +E L++ GV EITLLGQNVN++R +G++ F+ LL + L Sbjct: 173 SRHPSEIFEEIEALLEKGVKEITLLGQNVNSYRFT-WEGKEVRFAGLLREIVHRFPELPW 231 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+ TSHP+D+SD LI+ + +LHLPVQ GS+RIL +MNRR+T Y +++RI Sbjct: 232 LRFLTSHPKDLSDELIEVMSASPSICKHLHLPVQHGSNRILGAMNRRYTREHYLNLVERI 291 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P IA+++D +VGFPGET++D T+DL+ ++ +A A+++ Y+PR GT + + Sbjct: 292 RTAMPGIALTTDILVGFPGETEEDLELTLDLMRRVRFADAYTYYYNPRKGTRAYEWGDPI 351 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441 VK ERL + + RE + + +G++++VL+E+ K + +++ R+ + VV Sbjct: 352 PLEVKKERLDRVIRLQRELSLEWKQMRIGRMVDVLVEEVSRKREDEVLARTEQDEMVVFP 411 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469 + IG +V++ ++ +T E VV Sbjct: 412 ASPERIGRFARVQLVSLEGNTFRAEEVV 439 >gi|33866174|ref|NP_897733.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus sp. WH 8102] gi|81574233|sp|Q7U5R0|MIAB_SYNPX RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|33639149|emb|CAE08155.1| 2-methylthioadenine synthetase [Synechococcus sp. WH 8102] Length = 460 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 175/452 (38%), Positives = 263/452 (58%), Gaps = 25/452 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM + S GY N+ +ADL++ NTC IR+ A +KVYS+LGR Sbjct: 12 YWITTFGCQMNKADSERMAGILESMGYRAANAELEADLVLYNTCTIRDNAEQKVYSYLGR 71 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + +L ++VAGCVAQ EGE +LRR P +++V+GPQ RL LL R G Sbjct: 72 ----QAQRKRLDPNLTLIVAGCVAQQEGESLLRRVPELDLVMGPQHANRLEVLLNRVDSG 127 Query: 147 KRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++VV T D+ + E ++ R + ++ + GC++ CT+CVVP RG E SR Sbjct: 128 QQVVATEDHHI---LEDITTA----RRDSSICGWVNVIYGCNERCTYCVVPSVRGKEQSR 180 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKG 259 + E L G EITLLGQN++A+ G+ L G + T +DLL+ + ++ G Sbjct: 181 LPEAIRLEMEGLAAQGYKEITLLGQNIDAY-GRDLPGITPEGRRQHTLTDLLHQVHDVSG 239 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+ TSHPR ++ LI A DL L + H+P QSG + +L++M R +T YR+II Sbjct: 240 IKRIRFATSHPRYFTERLIDACADLPKLCEHFHIPFQSGDNDVLRAMARGYTVERYRRII 299 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 DRIR PD ++S+D IV FPGETD ++ T+DL+++IG+ Q + YSPR TP + Sbjct: 300 DRIRERMPDASLSADVIVAFPGETDLQYQRTLDLIEEIGFDQVNTAAYSPRPNTPAATWD 359 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS-----P 433 Q+ E VK RL + + N G+ EVL E + K+ +L+GR+ Sbjct: 360 NQLPEEVKVIRLQTINALVERCARERNARYAGRTEEVLAEGINPKDPSQLMGRTRTNRLT 419 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 + Q+ + HN GD++ VRI V+ +L G Sbjct: 420 FFQAAGPDGHQHNPGDLVNVRIDAVRSFSLSG 451 >gi|206895928|ref|YP_002247164.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Coprothermobacter proteolyticus DSM 5265] gi|229890499|sp|B5Y8R7|MIAB_COPPD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|206738545|gb|ACI17623.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Coprothermobacter proteolyticus DSM 5265] Length = 426 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 170/449 (37%), Positives = 254/449 (56%), Gaps = 35/449 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++++ +YGCQMN DS + + S G+E ++ D+DL+V+NTC +R A E+ +G Sbjct: 2 KYYIFTYGCQMNKNDSEMVSGILKSSGWEEAKNVVDSDLVVINTCSVRLHAEERA---IG 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I LK K VVV GC+++ G EI+ R P V V+GP + ++L R Sbjct: 59 TISALKKLGKK------VVVMGCMSEVRGNEIMSRFPHVQAVLGPSYEAHILDVLNGER- 111 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 R++ D V+ FE+ S NRK + +++I +GCD FCT+C+VP+TRG SR Sbjct: 112 --RILVGDEKVD--FEKYS----SANRKEKHSVYVSIMKGCDDFCTYCIVPFTRGRVQSR 163 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +++E R +DNG EITLLGQNVN + GK L G F L+ ++ I G+ R+R+ Sbjct: 164 DPESILEEVRVCVDNGAVEITLLGQNVNDY-GKDLSG--WDFVSLVERVATIDGVRRIRF 220 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 + HP + I +L + PY HLP+QSG D IL+ MNR++T E+ +++ IR Sbjct: 221 MSPHPANFKKDDITRLANLPQVAPYYHLPLQSGDDEILRRMNRKYTTGEFAELVGFIRES 280 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P++AI +D IVGFPGE+D+ F+ T ++K+ + + YSPR PG+ Q Sbjct: 281 VPNVAIGTDLIVGFPGESDEHFQNTFKFLEKMQFDVVYMAIYSPR---PGTAAARQETSF 337 Query: 386 VKAE-------RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 V AE LL LQ+K+ S N VG + EVLI++ K GK +GR+P ++V Sbjct: 338 VPAEVAKARYDELLRLQEKI---SYSINQRYVGTLQEVLIDREDKTTGKFIGRTPTNKTV 394 Query: 439 VLNSKNH-NIGDIIKVRITDVKISTLYGE 466 V S H + G+ + VRI + K LYGE Sbjct: 395 VFTSIRHVSPGEFVDVRINEAKSWVLYGE 423 >gi|291461037|ref|ZP_06026579.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium periodonticum ATCC 33693] gi|291379315|gb|EFE86833.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium periodonticum ATCC 33693] Length = 423 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 159/436 (36%), Positives = 259/436 (59%), Gaps = 16/436 (3%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNV +S +++ +F + GY+ DDAD + LNTC +RE AA +++ LG ++ LK Sbjct: 1 MNVNESAKIKKIFQNLGYDVTEETDDADAVFLNTCTVREGAATQIFGKLGELKTLK---- 56 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 E ++ V GC AQ +GEE++R+ PI+++V+G Q R+P+ +E+ + + Sbjct: 57 -EKKGTIIGVTGCFAQEQGEELVRKFPIIDIVMGNQNIGRIPQAIEKIENNESAHEVYTD 115 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 ED E +D + + TA ++I GC+ FCTFC+VPY RG E S L ++V + Sbjct: 116 NED--ELPPRLDAEFASDQ--TASISITYGCNNFCTFCIVPYVRGRERSVPLEEIVKDVE 171 Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275 + + G EI LLGQNVN++ +G+ F+ LL + +++G +R+ + HPRD +D Sbjct: 172 QYVSKGAKEIVLLGQNVNSYGKDFKNGD--NFAKLLEEICKVEGDYIVRFVSPHPRDFTD 229 Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335 +I D + LHLP+QSGS ++L+ M R +T +Y ++D+I+S PD+A+++D Sbjct: 230 DVIDVIAKNDKISKCLHLPLQSGSSQVLRKMRRGYTKEKYLALVDKIKSKIPDVALTADI 289 Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395 IVGFPGET++DF T+D+V+K+ + ++ F YS R GT + M Q+DE+VK ERL L Sbjct: 290 IVGFPGETEEDFLDTVDVVEKVSFDNSYMFMYSIRKGTKAATMDNQIDESVKKERLQRLM 349 Query: 396 KKLREQQVSFNDAC--VGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNIGDIIK 452 + + + SFN++ +I+ VL+E K+ K L GR+ + V+ G + Sbjct: 350 E--VQNKCSFNESSKYKDKIVRVLVEGPSKKNKEVLSGRTSTNKIVLFKGDMALKGQFVD 407 Query: 453 VRITDVKISTLYGELV 468 V+I + K TLYG++V Sbjct: 408 VKINECKTWTLYGDIV 423 >gi|303328189|ref|ZP_07358627.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Desulfovibrio sp. 3_1_syn3] gi|302861519|gb|EFL84455.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Desulfovibrio sp. 3_1_syn3] Length = 449 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 169/450 (37%), Positives = 256/450 (56%), Gaps = 24/450 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F + ++GCQMNV+DSL + ++G+ +++A ++V+NTC +REK +KV S L Sbjct: 4 KSFHIITFGCQMNVHDSLWLARALTARGFTEA-PLEEAGVVVVNTCSVREKPEQKVMSAL 62 Query: 85 GRIRNLKNSRIKEGGD--LLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 GRIR + GG+ +LV VAGCVAQ G R V +V G P +ER Sbjct: 63 GRIRQVT------GGNSGVLVAVAGCVAQQLGTAFFERESQVRLVAGSDGISGAPAAIER 116 Query: 143 --ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 A R+ D++ ER DG G A++ I +GCD FC +C+VP+TRG Sbjct: 117 LLAEPDLRLSLLDFT-SHYVEREPGADG----PSGPVAYVNIMQGCDNFCAYCIVPFTRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 + SR+ ++DE R +D G EITLLGQNVNA+ G G+ +F+ LL ++ + GL Sbjct: 172 RQKSRATPAILDECRTRLDQGAREITLLGQNVNAF-GHDKSGDGVSFAQLLAQVAALPGL 230 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR+ T HP+DM + A +L L P LHLP+Q+GSD +L M RR+ + +++D Sbjct: 231 ERLRFVTPHPKDMGLEDVAAFAELAPLCPRLHLPLQAGSDAVLTRMRRRYDRRGFLELVD 290 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R RPD+A+S+D IVGFPGE+++DF+AT+++++ G+ +FSF YS R G + + Sbjct: 291 SLRKARPDLALSTDLIVGFPGESEEDFQATLEMMEACGFMSSFSFCYSDRPGARAALFPD 350 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-----KLVGRSPW- 434 ++ V+ ERLL LQ + DA V + +LIE ++ G GR P+ Sbjct: 351 KIPPEVQQERLLRLQALQDRLSQRWLDARVDRETCLLIEGRSRKDGPDGESSWQGRDPYG 410 Query: 435 -LQSVVLNSKNHNIGDIIKVRITDVKISTL 463 L V L + + G ++ VRI + K +L Sbjct: 411 ALVHVALPPEADHTGRMVPVRIIEAKKHSL 440 >gi|224023497|ref|ZP_03641863.1| hypothetical protein BACCOPRO_00199 [Bacteroides coprophilus DSM 18228] gi|224016719|gb|EEF74731.1| hypothetical protein BACCOPRO_00199 [Bacteroides coprophilus DSM 18228] Length = 455 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 164/448 (36%), Positives = 260/448 (58%), Gaps = 21/448 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD + +NTC IR+ A +K+ + L Sbjct: 19 KKLFIETYGCQMNVADSEVIASIMQMAGYSPCETLEEADAVFMNTCSIRDNAEQKILNRL 78 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +L+ R L+V V GC+A+ +++ V++V GP Y LPEL+ Sbjct: 79 EFFHSLRKKR----KHLIVGVLGCMAERVKNDLIEHHH-VDLVAGPDAYLTLPELISAVE 133 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ +++I GC+ FC +C+VPYTRG E Sbjct: 134 AGEKAINVELSTTETYRDVIPSRICGNH-----ISGYVSIMRGCNNFCHYCIVPYTRGRE 188 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E L G E+TLLGQNVN++R + DG+ TF LL ++E +R Sbjct: 189 RSRDVESILNEVHDLERKGYKEVTLLGQNVNSYRFER-DGQTVTFPMLLRLVAESVPGMR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+DMSD + ++ + ++HLPVQSGS RILK MNR++T Y + ++ I Sbjct: 248 IRFTTSHPKDMSDETLHVIAEVPNVCKHIHLPVQSGSSRILKLMNRKYTREWYLERVEAI 307 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + PD +S+D GF ET++D + ++ L+ + Y AF FKYS R GT S L + Sbjct: 308 RRIIPDCGLSTDIFSGFHSETEEDHQMSLSLMRECAYDSAFMFKYSERPGTYASKHLPDD 367 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E +K RL + LQ +L + N VG+ EVL+E K K +L GR+ + Sbjct: 368 VPEEIKIRRLNEMIELQNQLSAES---NARDVGKTFEVLVEGVSKRSKDQLFGRTEQNKV 424 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYG 465 VV + H IGD ++VRITD +TL G Sbjct: 425 VVFDRGTHRIGDFVQVRITDSSSATLKG 452 >gi|111023729|ref|YP_706701.1| hypothetical protein RHA1_ro06771 [Rhodococcus jostii RHA1] gi|110823259|gb|ABG98543.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 552 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 155/428 (36%), Positives = 251/428 (58%), Gaps = 27/428 (6%) Query: 18 VDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 +DQ P R + V++YGCQMNV+DS R+ + GY + + DL+V NTC +RE A Sbjct: 51 IDQ--TPHRSYEVRTYGCQMNVHDSERLSGLLEDAGYTKAAAGQAPDLVVFNTCAVRENA 108 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 K+Y L + K + D+ + V GC+AQ + + +++++P V+VV G L Sbjct: 109 DNKLYGNLSHLAPAK----ERNPDMQIAVGGCLAQKDRDVVVKKAPWVDVVFGTHNIGSL 164 Query: 137 PELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 P LL+RAR +R V+ ++E L R+ +++I GC+ CTFC+V Sbjct: 165 PALLDRARHNQRAEVEILEALEAFPSTLPA-----KRESAYAGWVSISVGCNNTCTFCIV 219 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLL 251 P RG E+ R ++ E + L++ GV E+TLLGQNVNA+ D + + F+ LL Sbjct: 220 PALRGKEVDRRPGDILAEVQALVNEGVVEVTLLGQNVNAYGVSFADPDQPRDRGAFAALL 279 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 + +I GL R+R+T+ HP + +D +I+A + + P LH+P+QSGSDR+LK+M R + Sbjct: 280 RACGQIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLKAMRRSYR 339 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + IID++R+ P AI++D IVGFPGET++DF+ T+D+V + + A++F+YS R Sbjct: 340 KSRFLGIIDKVRTAMPHAAITTDIIVGFPGETEEDFQDTLDVVRQARFTSAYTFQYSKRP 399 Query: 372 GTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKE 424 GTP + M EQ+ + V + ERL+ LQ+++ ++ N VG +E+L+ + E Sbjct: 400 GTPAAEMDEQLPKAVVQERYERLIALQEQITLEE---NQKLVGAEVELLVAAGEGRKNAE 456 Query: 425 KGKLVGRS 432 ++ GR+ Sbjct: 457 TARMSGRA 464 >gi|210633082|ref|ZP_03297649.1| hypothetical protein COLSTE_01557 [Collinsella stercoris DSM 13279] gi|210159236|gb|EEA90207.1| hypothetical protein COLSTE_01557 [Collinsella stercoris DSM 13279] Length = 453 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 163/452 (36%), Positives = 256/452 (56%), Gaps = 30/452 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +F++++GCQMN++DS R+ + S G + DAD+++ TC +RE A ++Y G+ Sbjct: 12 YFIRTFGCQMNLHDSERVSGLLDSLGCLQALDPKDADIVIFMTCCVREAADTRLY---GQ 68 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + K+ G +V V GC+AQ +GE +L V+V+ G + + +LL A Sbjct: 69 CSSCKSLPASPSGRRVVAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVGDLLADA--- 125 Query: 147 KRVVDTDYSVEDKFERLSIVDGG------YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 ++ D+ R+ +D G ++R+ A++ I GC+ FC++C+VPY RG Sbjct: 126 -------FADGDRHVRVEEIDSGAATEMPWHRETAYHAWVPIMTGCNNFCSYCIVPYVRG 178 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259 E SR + ++VDE L+ GV +TLLGQNVN++ G D G F++LL + E G Sbjct: 179 REKSRPMEEIVDEVTGLVRQGVRSVTLLGQNVNSY---GRDHGSAPRFAELLRRVGE-TG 234 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+ +T+SHP+D+ I A ++ +MP LHL VQSGS RILK MNR++T +Y ++ Sbjct: 235 VERIYFTSSHPKDLLPETIDAIAEVPAVMPQLHLAVQSGSSRILKLMNRKYTREQYLDLV 294 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 DR+R PDIA+++D IVGFPGET++DF T+ LVD+ +AQAF+F YS R GTP + + Sbjct: 295 DRVRDRIPDIALTTDIIVGFPGETEEDFEQTVTLVDEAKFAQAFTFIYSKRAGTPAAEID 354 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438 + +V +R L + + +N +G + +LIE K+ L G+SPW Q+V Sbjct: 355 DPTPRSVIQQRFDRLVRHVETTAFDYNQRFLGTTVPMLIEGTSKKNDAVLQGKSPWNQTV 414 Query: 439 VLN-----SKNHNIGDIIKVRITDVKISTLYG 465 IG I+ VR+ + L G Sbjct: 415 HCPVPEGMDARQLIGKILDVRVDAARTWYLSG 446 >gi|310287756|ref|YP_003939014.1| RNA modification enzyme, MiaB family [Bifidobacterium bifidum S17] gi|309251692|gb|ADO53440.1| RNA modification enzyme, MiaB family [Bifidobacterium bifidum S17] Length = 479 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 157/403 (38%), Positives = 247/403 (61%), Gaps = 29/403 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82 F+V + GCQMNV+DS R+ + GY E + D DLI++NTC +RE AAE++Y Sbjct: 26 FYVHTLGCQMNVHDSERIAGVLEDDGYIPATEEQAADKDVDLIIMNTCAVRENAAERMYG 85 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +LK + ++ + + GC+AQ + + I +++P V+ V G + LP LL++ Sbjct: 86 TIGLWADLKRTH----PNMQIAIGGCMAQLDRKRIAQKAPWVDAVFGTKNIGSLPRLLDQ 141 Query: 143 ARFGKRVVDTDYSVEDKFE----RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 AR V DK + +L + R V+++++I GC+ CTFC+VP T Sbjct: 142 ARMAGTC---QVEVADKLDYFPSQLPVA-----RASKVSSWVSISIGCNNTCTFCIVPTT 193 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG E R ++ E R+ +D G E+TLLGQNVN++ G G+ G++ FS LL + +I+ Sbjct: 194 RGKEHDRRPGDILAEIRRCVDEGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGDIE 251 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R+T+ HP +D +I A + +M LH+P+QSGSD+IL++M R + + ++ I Sbjct: 252 GLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHMPLQSGSDKILRAMRRSYRSAKFLDI 311 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + ++R PD IS+D IVGFPGETD+DF ATMD+V + + AF+F+YSPR GTP + M Sbjct: 312 LRKVREAMPDAQISTDVIVGFPGETDEDFEATMDVVRQARFQSAFTFEYSPRPGTPAAEM 371 Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI 418 EQV V E RL+ LQ+++ E++++ + G+ +EV+I Sbjct: 372 -EQVPHEVVQERFDRLVKLQEQITEEELAKFE---GRDVEVMI 410 >gi|311064642|ref|YP_003971367.1| tRNA 2-methylthioadenosine synthase [Bifidobacterium bifidum PRL2010] gi|310866961|gb|ADP36330.1| tRNA 2-methylthioadenosine synthase [Bifidobacterium bifidum PRL2010] Length = 479 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 157/403 (38%), Positives = 247/403 (61%), Gaps = 29/403 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82 F+V + GCQMNV+DS R+ + GY E + D DLIV+NTC +RE AAE++Y Sbjct: 26 FYVHTLGCQMNVHDSERIAGVLEDDGYMPATEEQAADKDVDLIVMNTCAVRENAAERMYG 85 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +LK + ++ + + GC+AQ + + I +++P V+ V G + LP LL++ Sbjct: 86 TIGLWADLKRTH----PNMQIAIGGCMAQLDRKRIAQKAPWVDAVFGTKNIGSLPRLLDQ 141 Query: 143 ARFGKRVVDTDYSVEDKFE----RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 AR V D+ + +L + R V+++++I GC+ CTFC+VP T Sbjct: 142 ARMAGTC---QVEVADRLDYFPSQLPVA-----RASKVSSWVSISIGCNNTCTFCIVPTT 193 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG E R ++ E R+ +D G E+TLLGQNVN++ G G+ G++ FS LL + +I+ Sbjct: 194 RGKEHDRRPGDILAEIRRCVDEGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGDIE 251 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R+T+ HP +D +I A + +M LH+P+QSGSD+IL++M R + + ++ I Sbjct: 252 GLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHMPLQSGSDKILRAMRRSYRSAKFLDI 311 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + ++R PD IS+D IVGFPGETD+DF ATMD+V + + AF+F+YSPR GTP + M Sbjct: 312 LRKVREAMPDAQISTDIIVGFPGETDEDFEATMDVVRQARFQSAFTFEYSPRPGTPAAEM 371 Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI 418 EQV V E RL+ LQ+++ E++++ + G+ +EV+I Sbjct: 372 -EQVPHEVVQERFDRLVKLQEQITEEELAKFE---GRDVEVMI 410 >gi|163787659|ref|ZP_02182106.1| hypothetical protein FBALC1_03932 [Flavobacteriales bacterium ALC-1] gi|159877547|gb|EDP71604.1| hypothetical protein FBALC1_03932 [Flavobacteriales bacterium ALC-1] Length = 481 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 170/457 (37%), Positives = 255/457 (55%), Gaps = 22/457 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGC MN DS + + QG+ ++++ADL+++NTC IR+KA + V L Sbjct: 24 RKLFIESYGCAMNFSDSEIVASILSDQGFNTTKNLEEADLVLVNTCSIRDKAEQTVRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K + K + V V GC+A+ + L IV++VVGP Y LP LL Sbjct: 84 QQYNVVKRTNPK----MKVGVLGCMAERLKTKFLEEEKIVDLVVGPDAYKDLPNLLAEVD 139 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ ++ S E+ + +S V N GVTAF++I GCD CTFCVVP+TRG E S Sbjct: 140 EGRDAINVILSKEETYGDISPVRLNTN---GVTAFVSITRGCDNMCTFCVVPFTRGRERS 196 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251 R +++E L G EITLLGQNV++ W G GL D +K T F+ LL Sbjct: 197 RDPQSIIEEINDLWAKGFKEITLLGQNVDSYLWYGGGLKKDFDKATDLQKATAVNFASLL 256 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++ + +R+R++TS+P+D + +I+ D + ++HLPVQSGSDRILK MNR HT Sbjct: 257 ELAAKAQPKMRIRFSTSNPQDFTLDVIETMSKYDNICKHIHLPVQSGSDRILKEMNRLHT 316 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY ++ID IR + P+ +IS D I GFP E + D + T+ L++ + Y + F YS R Sbjct: 317 REEYFELIDNIRRIIPECSISQDLIAGFPTENEQDHQDTLSLMEYVKYNFGYMFTYSERP 376 Query: 372 GT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLV 429 GT G M + V E K RL + + R+ + +E+LIEK K+ + Sbjct: 377 GTMAGRKMEDDVPEETKKRRLNDIVQLQRKHSDFRTRQHLNTTVEILIEKSSKKSDLQWS 436 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 GR+ V +++ +GD++ V ITD +TL GE Sbjct: 437 GRTSDNTVAVFPKEDYKVGDLVNVYITDCTSATLIGE 473 >gi|148240091|ref|YP_001225478.1| 2-methylthioadenine synthetase [Synechococcus sp. WH 7803] gi|229891030|sp|A5GML6|MIAB_SYNPW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|147848630|emb|CAK24181.1| 2-methylthioadenine synthetase [Synechococcus sp. WH 7803] Length = 454 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 174/460 (37%), Positives = 268/460 (58%), Gaps = 27/460 (5%) Query: 22 IVPQR----FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 ++P R +++ ++GCQMN DS RM + S GY ++ DADL++ NTC IR+ A Sbjct: 1 MLPSRERGSYWITTFGCQMNKADSERMAGILESMGYREASAELDADLVLYNTCTIRDNAE 60 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 +KVYS+LGR + R + +L +VVAGCVAQ EGE +LRR P +++V+GPQ RL Sbjct: 61 QKVYSYLGR----QAQRKRTNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLE 116 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 LL++ G++VV T+ E ++ R + ++ + GC++ CT+CVVP Sbjct: 117 TLLQQVDSGQQVVATEE--HHILEDITTA----RRDSSICGWVNVIYGCNERCTYCVVPS 170 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLL 251 RG E SR + E L G EITLLGQN++A+ G+ L G + T +DLL Sbjct: 171 VRGKEQSRLPDAIKLEMEGLAAQGFKEITLLGQNIDAY-GRDLPGITPEGRRQHTLTDLL 229 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 + + +++GL R+R+ TSHPR +D LI A DL L + H+P QSG + +L++M R +T Sbjct: 230 HHVHDVEGLERIRFATSHPRYFTDRLIDACADLPKLCEHFHIPFQSGDNDVLRAMARGYT 289 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 YR+IIDRIR PD ++S+D IV FPGETD +R T+ L+++IG+ Q + YSPR Sbjct: 290 VERYRRIIDRIRERMPDASLSADVIVAFPGETDAQYRRTLALIEEIGFDQVNTAAYSPRP 349 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVG 430 TP ++ Q+ E++K ERL + + N G++ EVL E + K+ +L+G Sbjct: 350 NTPAADWDNQLPEDIKVERLREINALVERCARERNGRYAGRVEEVLAEGINPKDPSQLMG 409 Query: 431 RS-----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 R+ + + + + + GD++ V I V+ +L G Sbjct: 410 RTRTNRLTFFSATGADDRRYQAGDLVNVHIDAVRSFSLSG 449 >gi|222098978|ref|YP_002533546.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga neapolitana DSM 4359] gi|221571368|gb|ACM22180.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga neapolitana DSM 4359] Length = 443 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 166/448 (37%), Positives = 267/448 (59%), Gaps = 24/448 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF++K++GCQMN DS M + +G+ ++ ++AD++++NTC +R K+ EK YS LG Sbjct: 2 RFYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 ++ +K R L+V VAGCVA+ E E++L R + V+G + R+ E +++A Sbjct: 62 QMLKIKRKR-----KLVVGVAGCVAEKEREKLLERG--ADFVLGTRAVPRVTEAVKKALE 114 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G++V + +++ L + R A++TI GCD+FCT+C+VPYTRG E SR Sbjct: 115 GEKVALFEDHLDEYTHELPRI-----RTSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSR 169 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264 ++ +++E +KL + G E+T LGQNV+A+ GK L DG + + LL S+I+G+ R+ Sbjct: 170 PMADILEEVKKLAEQGYREVTFLGQNVDAY-GKDLKDG--SSLAKLLEEASKIEGIERIW 226 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TS+P D SD LI+ + +HLPVQSGS+RILK MNRR+T EY ++++IRS Sbjct: 227 FLTSYPTDFSDELIEVIAKNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRS 286 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--- 381 P++AISSD IVGFP ET++DF T+DLV+K + + YSPR GT + Sbjct: 287 KVPEVAISSDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVP 346 Query: 382 VDENV-KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 +E V + + L+ LQK++ + N+ G+ + +++E K G GR + + Sbjct: 347 YEEKVRRMQFLMNLQKRINRK---LNERYRGKTVRIIVEAQAK-NGLFYGRDIRNKIIAF 402 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ IG V++ + LYG++V Sbjct: 403 EGEDWMIGRFADVKVEKITAGPLYGKVV 430 >gi|224372319|ref|YP_002606691.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Nautilia profundicola AmH] gi|223588403|gb|ACM92139.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Nautilia profundicola AmH] Length = 422 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 167/446 (37%), Positives = 257/446 (57%), Gaps = 27/446 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++++GCQMNV DS + S YE + +DA+LI+LNTC +REK +K++S L Sbjct: 2 KKLYIETFGCQMNVKDSEHI-IAELSDEYETTQNPEDAELILLNTCSVREKPVQKLFSEL 60 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++ KN K G V GC A G+EI++R+P V+ V+G + R+ E L + Sbjct: 61 GALKK-KNPNAKFG------VCGCTASHMGKEIIKRAPFVSFVLGARNVSRIKEALNTPK 113 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V TD + +D + RK F+ I GCDK C+FC+VP TRG E+S Sbjct: 114 ----AVITDINYDD-----TTYIFKNTRKNPYKDFVNIMVGCDKKCSFCIVPKTRGKELS 164 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGLVR 262 + ++ + KL GV EITLLGQNVN + GK ++ K F+DLL +S+I G+ R Sbjct: 165 IPMDLIIKQIEKLAKEGVKEITLLGQNVNNY-GKRFSVEHPKVDFTDLLKEVSKIDGIER 223 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP D + + + ++H P+QSGS ILK+M R +T + + I Sbjct: 224 IRFTSPHPLHADDRFLDEFANNPKICKHIHFPLQSGSSEILKAMRRGYTKEWFLNRCEII 283 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + PD++I++D IVGFPGE+++DF TMD+++K+ + Q FSF YSPR T + M QV Sbjct: 284 RQI-PDVSITTDIIVGFPGESEEDFEHTMDVLEKVRFEQIFSFVYSPRPLTEAAEMPNQV 342 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 D+N+ ERL LQ + E +G+I +VLI++ G G+S +V + Sbjct: 343 DKNIAKERLYRLQSRHGEILDEIAKNQIGKIYKVLIDEPGS------GKSDNFFTVKIPE 396 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 N +G+I+ V+IT+ TL GE++ Sbjct: 397 TNKYLGEIVDVKITEANKHTLKGEVI 422 >gi|227875229|ref|ZP_03993371.1| possible tRNA 2-methylthioadenine synthetase [Mobiluncus mulieris ATCC 35243] gi|227844134|gb|EEJ54301.1| possible tRNA 2-methylthioadenine synthetase [Mobiluncus mulieris ATCC 35243] Length = 552 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 155/428 (36%), Positives = 245/428 (57%), Gaps = 31/428 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------------ADLIVLNTC 70 +P+ + V + GCQMN +DS RM + + G V+S+ + AD++VLNTC Sbjct: 23 LPRTYHVVTLGCQMNEHDSERMAGLLDAAGMVPVSSVPEKAARATRAGDGGADVVVLNTC 82 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130 +RE AA K+Y LG++ +K R +++ V GC AQ EG ILRR+P V+ + G Sbjct: 83 SVRENAANKLYGHLGQLAEVKRERP----GMMIAVGGCFAQQEGSGILRRAPWVDAIFGT 138 Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 LP LL RA + + +E+ + + + R +A+++I GC+ C Sbjct: 139 HNIDMLPVLLRRAELRQ---EAAVELEETLKVFPSMLPAH-RTSPASAWVSISVGCNNTC 194 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 TFC+VP RG E R +++ E + ++ G E+TLLGQNVN++ G G G + F+ L Sbjct: 195 TFCIVPSLRGRERDREPEEILRELQAVVAQGAVEVTLLGQNVNSY-GNGF-GRRGAFAQL 252 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L GL RLR+ + HP ++ +I A + +MP LH P+QSGSDR+L+ M R + Sbjct: 253 LREAGRTPGLERLRFASPHPAAFTEDVIAAMAETPTVMPSLHFPLQSGSDRVLRQMRRSY 312 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + +I+ +R P+ AI++D IVGFPGETD DF AT+ ++++ ++ AF+F YS R Sbjct: 313 RVERFLRILGEVRDAIPEAAITTDVIVGFPGETDADFEATLRVMEQARFSAAFTFIYSRR 372 Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG---KE 424 GTP ++ +QV V +E RLL LQ+++ ++ N+ GQ +EVL+ + G +E Sbjct: 373 PGTPAADREDQVPSEVVSERYQRLLALQERISTEE---NERLEGQTVEVLVGEQGTKDRE 429 Query: 425 KGKLVGRS 432 G++ GR+ Sbjct: 430 TGRMSGRA 437 >gi|209525671|ref|ZP_03274208.1| RNA modification enzyme, MiaB family [Arthrospira maxima CS-328] gi|209493840|gb|EDZ94158.1| RNA modification enzyme, MiaB family [Arthrospira maxima CS-328] Length = 436 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 170/443 (38%), Positives = 263/443 (59%), Gaps = 23/443 (5%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN DS RM + G V + AD+++ NTC IR+ A +KVYS+LGR + R Sbjct: 1 MNKADSERMAGILDEMGLTFVEDPNQADIVLYNTCTIRDNAEQKVYSYLGR----QAKRK 56 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 +E +L ++VAGCVAQ EGE +LRR P +++V+GPQ RL +LLE+ G +VV T Sbjct: 57 QENPNLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQVFEGSQVVAT--- 113 Query: 156 VEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 E ++IV+ +R +TA++ + GC++ CT+CVVP RG E SR+ + E Sbjct: 114 -----EPINIVEDITKPRRDSNITAWVNVIYGCNERCTYCVVPNVRGTEQSRTPEAIRAE 168 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGLVRLRYTT 267 +L G E+TLLGQN++A+ G+ L G + T +DLLY + +I G+ R+R+ T Sbjct: 169 MEELARAGYKEVTLLGQNIDAY-GRDLPGSTPDGRHQHTLTDLLYYVHDIPGIERIRFAT 227 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 SHPR ++ LI+A +L + + H+P QSG + +LK+M R +T +YR+II+ IR P Sbjct: 228 SHPRYFTERLIRACAELPKVCEHFHIPFQSGDNDVLKAMARGYTHEKYRRIINTIREYIP 287 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D +IS+D IVGFPGET+ F T+ LVD IG+ + YSPR GT + Q+ E VK Sbjct: 288 DASISADAIVGFPGETEAQFENTLKLVDDIGFDLLNTAAYSPRPGTGAALWENQLSEEVK 347 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKNHN 446 A+RL L + + + + + +I EVL+E + K+ +++GR+ + Sbjct: 348 ADRLQRLNRLVNVKAMERSQRYRDRIEEVLVEGTNPKDPSQVMGRTRGNRLTFFKGNLAE 407 Query: 447 I-GDIIKVRITDVKISTLYGELV 468 + G+++KV+I +V+ +L GE + Sbjct: 408 LSGELVKVKIIEVRAFSLTGEPI 430 >gi|295115178|emb|CBL36025.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [butyrate-producing bacterium SM4/1] Length = 457 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 167/445 (37%), Positives = 261/445 (58%), Gaps = 16/445 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F ++++GCQMN +DS ++E + G+ + ++ ++ADL++ NTC +RE A ++VY LG Sbjct: 22 FHIETFGCQMNAHDSEKLEGILLEAGFVKTDT-EEADLVLYNTCTVRENANQRVYGRLGY 80 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERA 143 + +LK K+ +L+ + GC+ Q + E+I + V+V+ G Y+L ELL R Sbjct: 81 LNSLK----KKNPRMLIGLCGCMMQEDQVVEKIKKTYRFVDVIFGTHNIYKLAELLFARL 136 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK V+D + DK + D RK + + I GC+ FC++C+VPY RG E Sbjct: 137 HTGKMVIDI-WKDTDKI----VEDLPSERKYPFKSGVNIMFGCNNFCSYCIVPYVRGRER 191 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E L+ +GV E+ LLGQNVN++ GK L E TF++LL + +I+GL R+ Sbjct: 192 SRRPEDIIKEIEGLVADGVVEVMLLGQNVNSY-GKNLP-EPITFAELLRRVEQIEGLERI 249 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD LI+ D + +LHLP+QSG RIL MNRR+T +Y + ++I+ Sbjct: 250 RFMTSHPKDLSDELIEVMRDSKKICRHLHLPLQSGRSRILGQMNRRYTKEQYLALAEKIK 309 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PDI++++D IVGFPGET +DF T+D+V K+ Y AF+F YS R GTP + M QV Sbjct: 310 TAIPDISLTTDIIVGFPGETKEDFEETLDVVRKVRYDSAFTFIYSKRTGTPAAVMENQVP 369 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442 E+V ER L +++ + V + +VL+E+ +G + GR +V Sbjct: 370 EDVIKERFDRLLSEVQRISNEISGRDVHTVQKVLVEEPDTHAEGMVTGRLSNNITVHFEG 429 Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467 IG I+ V + + K G+L Sbjct: 430 SRELIGKIVDVYLEESKGFYYMGKL 454 >gi|306818491|ref|ZP_07452214.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris ATCC 35239] gi|304648664|gb|EFM45966.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris ATCC 35239] Length = 552 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 155/428 (36%), Positives = 245/428 (57%), Gaps = 31/428 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------------ADLIVLNTC 70 +P+ + V + GCQMN +DS RM + + G V+S+ + AD++VLNTC Sbjct: 23 LPRTYHVVTLGCQMNEHDSERMAGLLDAAGMVPVSSVPEKAARATRAGDGGADVVVLNTC 82 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130 +RE AA K+Y LG++ +K R +++ V GC AQ EG ILRR+P V+ + G Sbjct: 83 SVRENAANKLYGHLGQLAEVKRERP----GMMIAVGGCFAQQEGSGILRRAPWVDAIFGT 138 Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 LP LL RA + + +E+ + + + R +A+++I GC+ C Sbjct: 139 HNIDMLPVLLRRAELRQ---EAAVELEETLKVFPSMLPAH-RTSPASAWVSISVGCNNTC 194 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 TFC+VP RG E R +++ E + ++ G E+TLLGQNVN++ G G G + F+ L Sbjct: 195 TFCIVPSLRGRERDREPEEILRELQAVVAQGAVEVTLLGQNVNSY-GNGF-GRRGAFAQL 252 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L GL RLR+ + HP ++ +I A + +MP LH P+QSGSDR+L+ M R + Sbjct: 253 LREAGRTPGLERLRFASPHPAAFTEDVIAAMAETPTVMPSLHFPLQSGSDRVLRQMRRSY 312 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + +I+ +R P+ AI++D IVGFPGETD DF AT+ ++++ ++ AF+F YS R Sbjct: 313 RVERFLRILGEVRDAIPEAAITTDVIVGFPGETDADFEATLRVMEQARFSAAFTFIYSRR 372 Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG---KE 424 GTP ++ +QV V +E RLL LQ+++ ++ N+ GQ +EVL+ + G +E Sbjct: 373 PGTPAADREDQVPSEVVSERYQRLLALQERISTEE---NERLEGQTVEVLVGEQGTKDRE 429 Query: 425 KGKLVGRS 432 G++ GR+ Sbjct: 430 TGRMSGRA 437 >gi|320534666|ref|ZP_08035108.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral taxon 171 str. F0337] gi|320133122|gb|EFW25628.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral taxon 171 str. F0337] Length = 495 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 154/422 (36%), Positives = 248/422 (58%), Gaps = 26/422 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------------DLIVLNTCH 71 P+ + V++ GCQMNV+DS M + GY RV + +A D++++NTC Sbjct: 18 PRTYHVRTLGCQMNVHDSEHMAGLLERAGYLRVEDVPEAAARATDAGDGGADVVIINTCS 77 Query: 72 IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131 +RE AA +++ LG++ +K R + + VAGC+AQ GE I+ R+P V+VV G Sbjct: 78 VRENAATRLFGNLGQLAAVKRERPG----MQIAVAGCLAQQMGEGIVDRAPWVDVVFGTH 133 Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKF 189 LP LLERAR ++ +VE + E L + +R A+++I GC+ Sbjct: 134 NLDVLPALLERARH-----NSAAAVELE-ESLKVFPSTLPTRRESSYAAWVSIAVGCNNT 187 Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249 CTFC+VP RG + R V+ E + G E+TLLGQNVN++ G G G++ F+ Sbjct: 188 CTFCIVPSLRGKQRDRRPGDVLAEVEAVAAQGAIEVTLLGQNVNSY-GVGF-GDRGAFAK 245 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL + ++G+ R+R+T+ HP +D +I+A + +MP LH+P+QSGSDR+L++M R Sbjct: 246 LLRATGSVEGIERVRFTSPHPAAFTDDVIEAMAFTEAVMPSLHMPLQSGSDRVLRAMRRS 305 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + + I+D++R V P+ AI++D IVGFPGET++DF+AT+D+V++ +A A++F+YSP Sbjct: 306 YRTQRFLGILDKVRDVMPEAAITTDIIVGFPGETEEDFQATLDVVEQARFASAYTFEYSP 365 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 R GTP ++ +QV V +R L +R N+ G+++EVL+ + + + Sbjct: 366 RPGTPAADRDDQVPVEVVKDRYRRLDALVRRIAHEENERQEGRVVEVLVAEGEGRRDSVT 425 Query: 430 GR 431 R Sbjct: 426 AR 427 >gi|269978120|ref|ZP_06185070.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris 28-1] gi|269933629|gb|EEZ90213.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris 28-1] Length = 547 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 155/428 (36%), Positives = 245/428 (57%), Gaps = 31/428 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------------ADLIVLNTC 70 +P+ + V + GCQMN +DS RM + + G V+S+ + AD++VLNTC Sbjct: 18 LPRTYHVVTLGCQMNEHDSERMAGLLDAAGMVPVSSVPEKAARATRAGDGGADVVVLNTC 77 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130 +RE AA K+Y LG++ +K R +++ V GC AQ EG ILRR+P V+ + G Sbjct: 78 SVRENAANKLYGHLGQLAEVKRERP----GMMIAVGGCFAQQEGSGILRRAPWVDAIFGT 133 Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 LP LL RA + + +E+ + + + R +A+++I GC+ C Sbjct: 134 HNIDMLPVLLRRAELRQ---EAAVELEETLKVFPSMLPAH-RTSPASAWVSISVGCNNTC 189 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 TFC+VP RG E R +++ E + ++ G E+TLLGQNVN++ G G G + F+ L Sbjct: 190 TFCIVPSLRGRERDREPEEILRELQAVVAQGAVEVTLLGQNVNSY-GNGF-GRRGAFAQL 247 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L GL RLR+ + HP ++ +I A + +MP LH P+QSGSDR+L+ M R + Sbjct: 248 LREAGRTPGLERLRFASPHPAAFTEDVIAAMAETPTVMPSLHFPLQSGSDRVLRQMRRSY 307 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + +I+ +R P+ AI++D IVGFPGETD DF AT+ ++++ ++ AF+F YS R Sbjct: 308 RVERFLRILGEVRDAIPEAAITTDVIVGFPGETDADFEATLRVMEQARFSAAFTFIYSRR 367 Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG---KE 424 GTP ++ +QV V +E RLL LQ+++ ++ N+ GQ +EVL+ + G +E Sbjct: 368 PGTPAADREDQVPSEVVSERYQRLLALQERISTEE---NERLEGQTVEVLVGEQGTKDRE 424 Query: 425 KGKLVGRS 432 G++ GR+ Sbjct: 425 TGRMSGRA 432 >gi|307700980|ref|ZP_07638005.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris FB024-16] gi|307613975|gb|EFN93219.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mobiluncus mulieris FB024-16] Length = 547 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 155/428 (36%), Positives = 245/428 (57%), Gaps = 31/428 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------------ADLIVLNTC 70 +P+ + V + GCQMN +DS RM + + G V+S+ + AD++VLNTC Sbjct: 18 LPRTYHVVTLGCQMNEHDSERMAGLLDAAGMVPVSSVPEKAARATRAGDGGADVVVLNTC 77 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130 +RE AA K+Y LG++ +K R +++ V GC AQ EG ILRR+P V+ + G Sbjct: 78 SVRENAANKLYGHLGQLAEVKRERP----GMMIAVGGCFAQQEGSGILRRAPWVDAIFGT 133 Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 LP LL RA + + +E+ + + + R +A+++I GC+ C Sbjct: 134 HNIDMLPVLLRRAELRQ---EAAVELEETLKVFPSMLPAH-RTSPASAWVSISVGCNNTC 189 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 TFC+VP RG E R +++ E + ++ G E+TLLGQNVN++ G G G + F+ L Sbjct: 190 TFCIVPSLRGRERDREPEEILRELQAVVAQGAVEVTLLGQNVNSY-GNGF-GRRGAFAQL 247 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L GL RLR+ + HP ++ +I A + +MP LH P+QSGSDR+L+ M R + Sbjct: 248 LREAGRTPGLERLRFASPHPAAFTEDVIAAMAETPTVMPSLHFPLQSGSDRVLRQMRRSY 307 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + +I+ +R P+ AI++D IVGFPGETD DF AT+ ++++ ++ AF+F YS R Sbjct: 308 RVERFLRILGEVRDAIPEAAITTDVIVGFPGETDADFEATLRVMEQARFSAAFTFIYSRR 367 Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG---KE 424 GTP ++ +QV V +E RLL LQ+++ ++ N+ GQ +EVL+ + G +E Sbjct: 368 PGTPAADREDQVPSEVVSERYQRLLALQERISTEE---NERLEGQTVEVLVGEQGTKDRE 424 Query: 425 KGKLVGRS 432 G++ GR+ Sbjct: 425 TGRMSGRA 432 >gi|291457707|ref|ZP_06597097.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve DSM 20213] gi|291380760|gb|EFE88278.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve DSM 20213] Length = 483 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 160/402 (39%), Positives = 246/402 (61%), Gaps = 27/402 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81 F + + GCQMNV+DS R+ + + GY E+VN D DLIVLNTC +RE AAE++Y Sbjct: 30 FHIHTLGCQMNVHDSERIAGVLETDGYVPATEEQVND-HDLDLIVLNTCAVRENAAERMY 88 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 +G +K R +L + V GC+AQ + ++I ++P V V G + LP+LL Sbjct: 89 GTVGLWAEMKRQR----PNLQIAVGGCMAQLDRQKIANKAPWVAAVFGTKNIGDLPQLLN 144 Query: 142 RARFGKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + R DT V+D+ ++ R V++++ I GC+ CTFC+VP TRG Sbjct: 145 Q----NRATDTPQVKVDDQLQQFPSQLPAARASR-VSSWVAISVGCNNTCTFCIVPTTRG 199 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E R ++DE R+ + NG E+TLLGQNVN++ G G+ G++ FS LL + I GL Sbjct: 200 KEKDRRPGDILDEVRQCVANGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGL 257 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP +D +I+A + +M LH+P+QSGSD+IL++M R + A ++ I++ Sbjct: 258 ERVRFTSPHPAAFTDDVIEAMAETPNVMHQLHMPLQSGSDKILRAMRRSYRASKFMTILE 317 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R PD IS+D IVGFPGET++DF+ T+D+V + ++ AF+F YSPR GTP + M E Sbjct: 318 KVRQAMPDAQISTDIIVGFPGETEEDFQQTLDVVRQARFSSAFTFIYSPRPGTPAAEM-E 376 Query: 381 QVDENV---KAERLLCLQKKLREQQV-SFNDACVGQIIEVLI 418 QV +V + RL+ LQ+++ + + SF G+ +EV+I Sbjct: 377 QVPHDVVQDRFNRLVALQEQITAENLQSFE----GRDVEVMI 414 >gi|86742200|ref|YP_482600.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Frankia sp. CcI3] gi|123737135|sp|Q2J771|MIAB_FRASC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|86569062|gb|ABD12871.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Frankia sp. CcI3] Length = 540 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 165/415 (39%), Positives = 246/415 (59%), Gaps = 24/415 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + S GY V+ +AD++V NTC +RE A ++Y LG+ Sbjct: 6 YEVRTFGCQMNVHDSERLCGLLESAGYSPVDPGGEADVVVFNTCAVRENADNRLYGNLGQ 65 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + +K K + + V GC+AQ + IL R+P V+VV G +RLP LLERAR Sbjct: 66 LVPVK----KGHPGMQIAVGGCLAQKDRAAILDRAPWVDVVFGTHNLHRLPVLLERARH- 120 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + VE E L + +R +A+++I GCD CTFC+VP RG E Sbjct: 121 ----NAAAQVEIA-EALEVFPSSLPTRRASHHSAWVSISVGCDNTCTFCIVPSLRGRERD 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R V+ E L+ G EITLLGQNVN++ G+ L G+ F+ LL + + GL R+R Sbjct: 176 RRPGDVLAEVEALVAEGALEITLLGQNVNSY-GRSL-GDPGAFAKLLAACGRVDGLERVR 233 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HPRD +D +I+A + LH+P+QSGSD +L+ M R + + I++R+R+ Sbjct: 234 FTSPHPRDFTDDVIEAMATTSNVCHQLHMPLQSGSDTVLRRMRRSYRRDRFLGIVERVRA 293 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD AI++D IVGFPGET+ DF T+D+V ++ AF+F+YSPR GTP + M QVD Sbjct: 294 AMPDAAITTDIIVGFPGETEADFADTLDVVRAARFSGAFTFQYSPRPGTPAATMDAQVDR 353 Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRS 432 A+ RL+ LQ ++ + N A VG+ +EVL+ E G++ G++ GR+ Sbjct: 354 ATVADRYTRLVALQDEISWAE---NRALVGRRVEVLVSEGEGRKDGATGRMSGRA 405 >gi|291538852|emb|CBL11963.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis XB6B4] Length = 496 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 174/463 (37%), Positives = 258/463 (55%), Gaps = 34/463 (7%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P F V ++GCQMN DS ++ + GY +S + AD ++ NTC +RE A KVY Sbjct: 50 PLTFHVSTFGCQMNARDSEKLVGILEKIGYVEEDS-EKADFVIYNTCTVRENANNKVYGR 108 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL- 140 LG + + K+ +++ + GC+ Q E+I + VN++ G Y+ EL+ Sbjct: 109 LGYLNGFQ----KKNPFMMIGLCGCMMQEPTVVEKIKQSYRFVNLIFGTHNIYKFAELIV 164 Query: 141 ---------ERARFGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186 A G + DTD VED V+ Y+ K GV I GC Sbjct: 165 TALENSYSEHAAGHGTSMTIDIWKDTDKIVED-----LPVERKYSFKSGVN----IMFGC 215 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246 + FC++C+VPY RG E SR +++ E +L +GV EI LLGQNVN++ GK L+ + T Sbjct: 216 NNFCSYCIVPYVRGRERSREPKEIIREVERLAADGVVEIMLLGQNVNSY-GKNLE-QPMT 273 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F+ LL + ++ G+ R+R+ TSHP+D+SD LI+ + + +LHLP+QSGS RILK M Sbjct: 274 FAQLLQEIEKVDGIERIRFMTSHPKDLSDDLIEVMKNSKKICKHLHLPLQSGSSRILKLM 333 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 NRR+ Y +++D+IR+ PDIA+++D IVGFPGET++DF TMD+V K+ Y AF+F Sbjct: 334 NRRYDKEHYLELVDKIRAAVPDIALTTDIIVGFPGETEEDFEETMDVVRKVRYDSAFTFI 393 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 YS R GTP + M +Q+ ++V R L K+++ A GQ + VLIE+ ++ Sbjct: 394 YSKRTGTPAAVMDDQIPDDVIKARFDRLLKEVQTISAEKAGALTGQTLPVLIEEKNEQDA 453 Query: 427 KLV-GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 LV GR V L IG I+ V++ + K GE V Sbjct: 454 ALVTGRLSNNSVVHLPGTEDMIGKIVDVKLLECKGFYYMGECV 496 >gi|269123553|ref|YP_003306130.1| RNA modification enzyme, MiaB family [Streptobacillus moniliformis DSM 12112] gi|268314879|gb|ACZ01253.1| RNA modification enzyme, MiaB family [Streptobacillus moniliformis DSM 12112] Length = 438 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 157/442 (35%), Positives = 261/442 (59%), Gaps = 13/442 (2%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V +YGCQMNV +S +++ +F + GY+ V+ +DD D + LNTC +RE AA +++ LG + Sbjct: 6 VITYGCQMNVNESAKIKKIFQNMGYQVVDEIDDCDAVFLNTCTVREGAATQIFGKLGELI 65 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 LK ++ ++ + GC AQ G E++++ P++++V+G Q R+P+ +E+ + Sbjct: 66 ELKKNK-----GTVIGITGCFAQEAGFELIKKFPMIDIVMGNQNIGRIPDAIEKILKHES 120 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ED+ D G ++ TA ++I GCDK C+FC+VPY RG E S + Sbjct: 121 EHEVYTDNEDELPPRLDADFGSDK----TASISISYGCDKRCSFCIVPYVRGKERSVPME 176 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++ + R + G EI LLGQNVNA+ K +G+ TF+ LL + +I+G LR+T+ Sbjct: 177 DILSDVRHYLKKGAKEIVLLGQNVNAYGKKFKNGD--TFAKLLDEICKIEGDYILRFTSP 234 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 HP+D +D +I + + +H+P+QSGS +ILK M R +T ++ + +I+ P+ Sbjct: 235 HPKDFTDDVIDVIARNEKIARCIHMPLQSGSTKILKKMIRGYTKEQFLDLAYKIKERIPE 294 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++++D IVGFPGETD+DF+ T+D+V+K+G+ A+ F YS R GT + M EQV E +K Sbjct: 295 ASLTTDIIVGFPGETDEDFKDTLDVVEKVGFENAYIFMYSIRRGTRAAIMDEQVSEEIKK 354 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI- 447 ERL L + + +G+++ VL+E K+ +++ VVL S + + Sbjct: 355 ERLQKLNNLQDRRAYKESVKYLGKVMRVLVEGPSKKNKEILTGRTSTNKVVLFSGDAKLY 414 Query: 448 -GDIIKVRITDVKISTLYGELV 468 G + V+I + K TLYGE+V Sbjct: 415 RGRFVNVKINECKTWTLYGEIV 436 >gi|317970572|ref|ZP_07971962.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus sp. CB0205] Length = 461 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 173/455 (38%), Positives = 268/455 (58%), Gaps = 31/455 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM + S GY + +ADL++ NTC IR+ A +KVYS+LGR Sbjct: 18 YWITTFGCQMNKADSERMAGILESMGYSEATAELEADLVLYNTCTIRDNAEQKVYSYLGR 77 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + +L +VVAGCVAQ EGE +LRR P +++V+GPQ RL LL + G Sbjct: 78 ----QAQRKRVNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDVLLSQVEQG 133 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++VV T+ E ++ R + ++ + GC++ CT+CVVP RG E SR Sbjct: 134 QQVVATEE--HHILEDITTA----RRDSSICGWVNVIYGCNERCTYCVVPSVRGKEQSRL 187 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260 + E L G EITLLGQN++A+ G+ L G + T +DLL + +++G+ Sbjct: 188 PEAIKLEMEGLAAQGFKEITLLGQNIDAY-GRDLPGITPEGRRQHTLTDLLQFVHDVEGI 246 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHPR ++ LI A DL + + H+P QSG D +LK+M R +T YR+IID Sbjct: 247 ERIRFATSHPRYFTERLIDACADLPKVCEHFHVPFQSGDDDVLKAMARGYTIDRYRRIID 306 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR PD +IS+D IV FPGETD +R T+DL+D+IG+ Q + YSPR TP ++ Sbjct: 307 RIRDRMPDASISADVIVAFPGETDAQYRRTLDLIDEIGFDQVNTAAYSPRPNTPAADWPN 366 Query: 381 QVDENVKAERL----LCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS--- 432 Q+ E VK +RL +++K +E+ + G+ +VL+E + K+ +++GR+ Sbjct: 367 QLSEEVKVQRLQEINALVERKAKERSARY----AGRTEQVLVEGVNPKQADQVMGRTRTN 422 Query: 433 --PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 + + + + GD+++VRI +V+ +L G Sbjct: 423 RLTFFPAARASEGHWQAGDLVEVRIEEVRAFSLSG 457 >gi|315226650|ref|ZP_07868438.1| tRNA-I(6)A37 thiotransferase [Parascardovia denticolens DSM 10105] gi|315120782|gb|EFT83914.1| tRNA-I(6)A37 thiotransferase [Parascardovia denticolens DSM 10105] Length = 501 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 165/450 (36%), Positives = 262/450 (58%), Gaps = 38/450 (8%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DADLIVLNTCHIREKAAEKVYS 82 ++V + GCQMNV+DS R+ + S GY + N + D DLIV+NTC +RE A+ ++Y Sbjct: 50 YYVHTLGCQMNVHDSERIAGVLESDGYVKANQVQIDSHDLDLIVMNTCAVRENASNRMYG 109 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LG+ LK +E L + V GC+AQ + + I R+P V+ V G + L LL++ Sbjct: 110 TLGQWAELK----RENPRLQIAVGGCMAQKDRQRITERAPWVDAVFGTKNIGSLTGLLDK 165 Query: 143 ARFGKR-----VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 AR +R D DY +L + +R V+A++ I GC+ CTFC+VP Sbjct: 166 ARAERRSQVQVATDLDYFPS----QLPV-----SRASRVSAWVAISMGCNNTCTFCIVPS 216 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG E R V+DE ++ +D G E+TLLGQNVN++ G + G++ FS LL + +I Sbjct: 217 VRGRERDRRPGDVLDEIQRCVDAGSKEVTLLGQNVNSY-GYSM-GDRYAFSKLLRACGKI 274 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 GL R+R+T+ HP +D +I+A + +M LH+P+QSGSDRIL++M R + ++ Sbjct: 275 DGLERVRFTSPHPAAFTDDVIEAMAETPNVMHQLHMPLQSGSDRILRAMRRSYRTAKFMD 334 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 I+ ++R+ PD IS+D IVGFPGET++DF+ T+DL+ + +A A++F+YSPR GTP + Sbjct: 335 ILGKVRAAMPDAQISTDVIVGFPGETEEDFQRTLDLISQARFASAYTFEYSPRPGTPAA- 393 Query: 378 MLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGR 431 +L Q+ +V + RL LQ+++ E+ + A G+ +EV++ G++ G ++ GR Sbjct: 394 LLPQIPADVMRDRYTRLHDLQEEITEEGLK---AFRGKEVEVMVTGQGRKDGNTHRITGR 450 Query: 432 SPWLQSVVLNSKN----HNIGDIIKVRITD 457 V + +GD + +TD Sbjct: 451 EKTGTLVHIGPPEGYPAARVGDFVTCTVTD 480 >gi|153864929|ref|ZP_01997651.1| tRNA-i(6)A37 modification enzyme MiaB [Beggiatoa sp. SS] gi|152145575|gb|EDN72348.1| tRNA-i(6)A37 modification enzyme MiaB [Beggiatoa sp. SS] Length = 304 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 136/298 (45%), Positives = 202/298 (67%), Gaps = 2/298 (0%) Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231 + G TAF++I EGC +CTFCVVPYTRG E+SR V+ E L D GV E+TLLGQN Sbjct: 5 KAEGPTAFVSIMEGCSHYCTFCVVPYTRGEEVSRPFDDVIAEVAFLADQGVREVTLLGQN 64 Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 VN +RG +G+ + L+ ++ I G+ R+RYTTSHP ++S+ LI+ + ++ L+ +L Sbjct: 65 VNGYRGHKAEGDIADLALLITYIAAIDGIERIRYTTSHPLELSENLIQVYAEVPKLVSHL 124 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 HLPVQSGSDRIL M R HTA EY+Q + ++R+VRPD+++SSDFI+GFPGET+ DF+ATM Sbjct: 125 HLPVQSGSDRILSLMKRGHTALEYKQKVRKLRAVRPDLSLSSDFIIGFPGETEADFQATM 184 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411 L+++IG+ +FSF YSPR GTP +++ + V +K +RL LQ ++ E + + + VG Sbjct: 185 QLIEEIGFDHSFSFIYSPRPGTPAASLPDDVPIALKKQRLAQLQARITEMAHAISASLVG 244 Query: 412 QIIEVLIEKHGKEKGK--LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 I +L+E+ ++ K + GR+ + V K IG ++VRIT+ ++L GE+ Sbjct: 245 SIQRILVEQPSRKNPKELVAGRTENNRVVNFAGKASLIGQFVEVRITEALPNSLRGEI 302 >gi|183981582|ref|YP_001849873.1| 2-methylthioadenine synthetase, MiaB [Mycobacterium marinum M] gi|229890403|sp|B2HGN2|MIAB1_MYCMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB 1; AltName: Full=tRNA-i(6)A37 methylthiotransferase 1 gi|183174908|gb|ACC40018.1| 2-methylthioadenine synthetase, MiaB [Mycobacterium marinum M] Length = 529 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 167/464 (35%), Positives = 255/464 (54%), Gaps = 37/464 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V++ GC MN +DS RM + GY + + ADL+V NTC +RE A K+Y L Sbjct: 27 YEVRTLGCLMNAHDSERMAGLLEDAGYIKADPGAPADLVVFNTCAVRENADNKLYGSLAH 86 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + +K SR + + V GC+AQ + +L R+P V+VV G LP LLER+R Sbjct: 87 LAPIKASRPG----MQIAVGGCLAQKDRHIVLDRAPWVDVVFGTHNIGSLPVLLERSRHN 142 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + D VE E L R A+++I GC+ CTFC+VP RG E Sbjct: 143 Q-----DAQVE-ILESLRTFPSALPAARDSAYAAWVSISVGCNNSCTFCIVPSLRGKEAD 196 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-----------FSDLLYS 253 R ++ E + L++ GV E+TLLGQNVN++ D + T F+ LL + Sbjct: 197 RRPGDILAEVQALVEQGVLEVTLLGQNVNSYGVNFADPDPSTGEEPLPRDRGAFAQLLRA 256 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 I+GL R+R+T+ HP + +D +I A + + P+LH+P+QSGSD+ILK+M R + Sbjct: 257 CGRIEGLERIRFTSPHPAEFTDDVILAMAETPAVCPHLHMPLQSGSDQILKAMRRSYRRD 316 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 Y IID++R+ P AI++D IVGFPGET+ DF T+D+V K + AF+F+YSPR GT Sbjct: 317 RYLGIIDKVRAAIPHAAITTDIIVGFPGETEHDFEQTLDVVQKARFTSAFTFQYSPRPGT 376 Query: 374 PGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI----EKHGKEKG 426 P ++M +Q+ +NV + ERL+ LQ+++ + N + VG E+L+ + Sbjct: 377 PAADMPDQIPKNVVQQRFERLVALQERI---SLESNRSLVGTRQELLVVAGEGRKNATTA 433 Query: 427 KLVGRS--PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 ++ GR+ L +S + ++ GD++ V ITD L + Sbjct: 434 RISGRARDGRLVHFRPDSADGSVRPGDLVDVEITDAAPHHLIAD 477 >gi|116073345|ref|ZP_01470607.1| hypothetical protein RS9916_32882 [Synechococcus sp. RS9916] gi|116068650|gb|EAU74402.1| hypothetical protein RS9916_32882 [Synechococcus sp. RS9916] Length = 473 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 178/458 (38%), Positives = 269/458 (58%), Gaps = 31/458 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM + S GY + DADL++ NTC IR+ A +KVYS+LGR Sbjct: 29 YWITTFGCQMNKADSERMAGILESMGYCEATAELDADLVLYNTCTIRDNAEQKVYSYLGR 88 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + +L +VVAGCVAQ EGE +LRR P +++V+GPQ RL LL + G Sbjct: 89 ----QAQRKRSNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLTQVEAG 144 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++VV T+ E L+ R + A++ + GC++ CT+CVVP RG E SR Sbjct: 145 QQVVATEE--HHILEDLTTA----RRDSAICAWVNVIYGCNERCTYCVVPSVRGKEQSRM 198 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260 + E L G EITLLGQN++A+ G+ L G + T +DLL+ + ++ G+ Sbjct: 199 PEAIKLEMEGLAAQGFKEITLLGQNIDAY-GRDLPGITPEGRRQHTLTDLLHFVHDVDGV 257 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHPR ++ LI A DL L + H+P QSG + +L+SM R +T YR+IID Sbjct: 258 ERIRFATSHPRYFTERLIDACADLPKLCEHFHIPFQSGDNDVLRSMARGYTVERYRRIID 317 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR PD ++S+D IV FPGETD +R T+DL+++IG+ Q + YSPR TP ++ Sbjct: 318 RIRERMPDASLSADVIVAFPGETDAQYRRTLDLIEEIGFDQVNTAAYSPRPNTPAADWDN 377 Query: 381 QVDENVKAERL----LCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWL 435 Q+ E VK RL +++ RE+ ++ G+I EVL E + K+ +L+GR+ Sbjct: 378 QLPEEVKVARLQEINALVERCARERNARYD----GRIEEVLAEGINPKDPSQLMGRTRTN 433 Query: 436 QSVVLNSKNHN-----IGDIIKVRITDVKISTLYGELV 468 + +++ + GD+++VRI V+ +L G V Sbjct: 434 RLTFFSAQGADGCSFKPGDLVQVRIDAVRSFSLSGTPV 471 >gi|302386432|ref|YP_003822254.1| RNA modification enzyme, MiaB family [Clostridium saccharolyticum WM1] gi|302197060|gb|ADL04631.1| RNA modification enzyme, MiaB family [Clostridium saccharolyticum WM1] Length = 482 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 165/441 (37%), Positives = 266/441 (60%), Gaps = 24/441 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + ++GCQMN DS +++ + + G+ ++ ++AD ++ NTC +RE A ++VY LG Sbjct: 48 FHIATFGCQMNSRDSEKLQGILEAIGFVEHDT-EEADFVLYNTCTVRENANDRVYGRLGY 106 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERA 143 + +LK K+ +++ + GC+ Q E +I + V+++ G ++L EL+ ER Sbjct: 107 LNSLK----KKNPYMMIALCGCMMQEEEVVAKIKKSYRFVDIIFGTHNIFKLAELMYERL 162 Query: 144 RFGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 K VVD TD VED + Y+ K GV I GC+ FC++C+VPY R Sbjct: 163 EEKKMVVDIWEGTDRIVED-----LPTERKYSFKSGVN----IMFGCNNFCSYCIVPYVR 213 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SRS +++E ++L+++GV EI LLGQNVN++ GK LD +F++LL + +++G Sbjct: 214 GRERSRSPKDILEEIKQLVNDGVVEIMLLGQNVNSY-GKTLDT-PVSFAELLTQIDQVEG 271 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+ TSHP+D+SD LIKA + + +LHLP+QSGS RILK MNR++T +Y +++ Sbjct: 272 LERIRFMTSHPKDLSDELIKAMKNSKKVCHHLHLPLQSGSSRILKVMNRKYTKEQYLELV 331 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++IR+ PDI++++D IVGFPGET++DF T+++V K+ + AF+F YS R GTP + M Sbjct: 332 EKIRTAIPDISLTTDIIVGFPGETEEDFNETLEVVRKVRFDSAFTFIYSKRTGTPAAKME 391 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438 EQV E R L +++ V + +VL E+ + E+G L GR +V Sbjct: 392 EQVSEEAIKNRFDRLLDEVKNISSEVCGREVHTVQKVLAEEVNDHEEGLLTGRLGNNTTV 451 Query: 439 VLNSKNHNIGDIIKVRITDVK 459 + IG I+ V + + + Sbjct: 452 HFKGDSSLIGKIVDVYLDESR 472 >gi|228471870|ref|ZP_04056641.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga gingivalis ATCC 33624] gi|228276800|gb|EEK15503.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Capnocytophaga gingivalis ATCC 33624] Length = 481 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 170/463 (36%), Positives = 261/463 (56%), Gaps = 30/463 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + G+ + +ADL+++NTC +REKA + + L Sbjct: 24 RKLYIESYGCQMNFSDSEIVASILHKVGFNTTEELHEADLVLINTCSVREKAEQTIRKRL 83 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K + + V V GC+A+ + L IV++VVGP Y LP LL+ Sbjct: 84 EQFNAVKRHKPA----MKVGVLGCMAERLKHQFLEEEHIVDLVVGPDAYKDLPNLLQEVD 139 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V+ S ++ + +S + N GVTAF++I GCD CTFC+VP+TRG E S Sbjct: 140 NGRDAVNVLLSRDETYADISPIRLNSN---GVTAFVSITRGCDNMCTFCIVPFTRGRERS 196 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251 R ++ E +L G E+TLLGQNV++ W G GL D EK + F+ LL Sbjct: 197 RDPHSIIHEIEELWARGFREVTLLGQNVDSYLWYGGGLKKDFEKASDIQKVTAVNFAKLL 256 Query: 252 YSLSEIKGLVRLRYTTSHPRDMS----DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 ++ +R+R++TS+P+DM+ D + K H + Y+HLPVQSGS+RILK+MN Sbjct: 257 DMVATQFPKMRIRFSTSNPQDMTLDVIDTMAKHHN----ICKYIHLPVQSGSNRILKAMN 312 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R HT EY +ID IR P+ AIS D I GFP ET++D + T+ L++ + Y F F Y Sbjct: 313 RLHTREEYFALIDGIRERIPECAISQDMITGFPTETEEDHQDTLSLMEYVKYDFGFMFAY 372 Query: 368 SPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 S R GT + + + V + VK RL + ++ + A VG+ +EVLIE + K+ Sbjct: 373 SERPGTLAARKIADDVPDEVKKRRLTEIIDLQQKHSLLRTQAQVGKTVEVLIEGNSKKSD 432 Query: 427 K-LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +GR+ VV +++ +GD + V+IT+ +TL GE V Sbjct: 433 QEWMGRNTQNTVVVFPKEHYKVGDFVNVKITNCTSTTLIGEAV 475 >gi|294787007|ref|ZP_06752261.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parascardovia denticolens F0305] gi|294485840|gb|EFG33474.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parascardovia denticolens F0305] Length = 481 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 165/450 (36%), Positives = 262/450 (58%), Gaps = 38/450 (8%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DADLIVLNTCHIREKAAEKVYS 82 ++V + GCQMNV+DS R+ + S GY + N + D DLIV+NTC +RE A+ ++Y Sbjct: 30 YYVHTLGCQMNVHDSERIAGVLESDGYVKANQVQIDSHDLDLIVMNTCAVRENASNRMYG 89 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LG+ LK +E L + V GC+AQ + + I R+P V+ V G + L LL++ Sbjct: 90 TLGQWAELK----RENPRLQIAVGGCMAQKDRQRITERAPWVDAVFGTKNIGSLTGLLDK 145 Query: 143 ARFGKR-----VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 AR +R D DY +L + +R V+A++ I GC+ CTFC+VP Sbjct: 146 ARAERRSQVQVATDLDYFPS----QLPV-----SRASRVSAWVAISMGCNNTCTFCIVPS 196 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG E R V+DE ++ +D G E+TLLGQNVN++ G + G++ FS LL + +I Sbjct: 197 VRGRERDRRPGDVLDEIQRCVDAGSKEVTLLGQNVNSY-GYSM-GDRYAFSKLLRACGKI 254 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 GL R+R+T+ HP +D +I+A + +M LH+P+QSGSDRIL++M R + ++ Sbjct: 255 DGLERVRFTSPHPAAFTDDVIEAMAETPNVMHQLHMPLQSGSDRILRAMRRSYRTAKFMD 314 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 I+ ++R+ PD IS+D IVGFPGET++DF+ T+DL+ + +A A++F+YSPR GTP + Sbjct: 315 ILGKVRAAMPDAQISTDVIVGFPGETEEDFQRTLDLISQARFASAYTFEYSPRPGTPAA- 373 Query: 378 MLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG---KLVGR 431 +L Q+ +V + RL LQ+++ E+ + A G+ +EV++ G++ G ++ GR Sbjct: 374 LLPQIPADVMRDRYTRLHDLQEEITEEGLK---AFRGKEVEVMVTGQGRKDGNTHRITGR 430 Query: 432 SPWLQSVVLNSKN----HNIGDIIKVRITD 457 V + +GD + +TD Sbjct: 431 EKTGTLVHIGPPEGYPAARVGDFVTCTVTD 460 >gi|306836314|ref|ZP_07469294.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium accolens ATCC 49726] gi|304567785|gb|EFM43370.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium accolens ATCC 49726] Length = 489 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 159/441 (36%), Positives = 243/441 (55%), Gaps = 31/441 (7%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNV+DS R+ + GY + + DLIV NTC +RE A +++Y LG ++ K + Sbjct: 1 MNVHDSERISGLLEEAGYAAADEATEPDLIVFNTCAVRENADKRLYGTLGALKKTKENHP 60 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 + + V GC+AQ + + +L +P V+ V G LP LLERAR + + Sbjct: 61 G----MQIAVGGCLAQKDKDTVLDNAPWVDAVFGTHNMAALPTLLERARHNE---EAQVE 113 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 + D E V R+ ++++ GC+ CTFC+VP RG E R ++ E + Sbjct: 114 IVDSLEAFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEEDRRPGDILAEVQ 172 Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGE----KCTFSDLLYSLSEIKGLVRLRYTTSHPR 271 L+D GV E+TLLGQNVNA+ D E + FS LL + +I GL RLR+T+ HP Sbjct: 173 ALVDQGVSEVTLLGQNVNAYGVNFADPEMPRDRFAFSKLLREVGKIDGLERLRFTSPHPA 232 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 + + +I A + + P LH+P+QSGSD++LK M R + ++ +I+D +R P+ AI Sbjct: 233 EFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMRRSYRTKKFLRILDEVREKIPNAAI 292 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KA 388 ++D IVGFPGET+ DF+ TMDLV + +A AF+F+YSPR GTP + M QV + V + Sbjct: 293 TTDIIVGFPGETEVDFQDTMDLVRRARFASAFTFQYSPRPGTPAAEMENQVPKEVVQDRF 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-------------GKLVGRSPWL 435 ERL+ LQ ++ ++ N VG +E+L++ G K G+LV SP Sbjct: 353 ERLVALQDSIQAEE---NQKLVGTEVELLVQAEGGRKNDETHRMSGRARDGRLVHFSPID 409 Query: 436 QSVVLNSKNHNIGDIIKVRIT 456 + S GD+++ ++T Sbjct: 410 DNGADISVEIRPGDVVRTKVT 430 >gi|167758192|ref|ZP_02430319.1| hypothetical protein CLOSCI_00530 [Clostridium scindens ATCC 35704] gi|167664089|gb|EDS08219.1| hypothetical protein CLOSCI_00530 [Clostridium scindens ATCC 35704] Length = 492 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 170/452 (37%), Positives = 262/452 (57%), Gaps = 32/452 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 +++GCQMN DS ++ + GYE D AD ++ NTC +RE A +VY LG+++ Sbjct: 61 ARTFGCQMNARDSEKLRGILEKIGYEEAPE-DVADFVIYNTCTVRENANTRVYGRLGQLK 119 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLERARFG 146 LK K+ +++ + GC+ Q E E LR+S V+++ G ++ EL+ + Sbjct: 120 PLK----KKNPHMMIGLCGCMMQEPEVVEKLRKSYRFVDIIFGTHNIFKFAELIVQRLES 175 Query: 147 KRVV-----DTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + +V DTD VED ER G N I GC+ FC++C+VPY RG Sbjct: 176 QEMVIDIWKDTDKIVEDLPNERKYFFKSGVN----------IMFGCNNFCSYCIVPYVRG 225 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR ++ E +L+ +GV E+ LLGQNVN++ GK L+ E +F+ LL + +I+GL Sbjct: 226 RERSRDPKAIIREIERLVADGVVEVMLLGQNVNSY-GKNLE-EPMSFARLLTEIEKIEGL 283 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHP+D+SD LI+ G+ + +LHLP+QSGS RIL+ MNRR+T +Y ++D Sbjct: 284 ERIRFMTSHPKDLSDELIEVMGNSKKICKHLHLPIQSGSSRILEKMNRRYTKEQYLTLVD 343 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +IR PDI++++D IVGFPGET++DF+ T+D+V K+ Y AF+F YS R GTP + M + Sbjct: 344 KIRKAVPDISLTTDIIVGFPGETEEDFQETLDVVRKVRYDSAFTFIYSKRTGTPAAAMED 403 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQ 436 Q+ E+V + +RLL + + Q S ++ CV L+E + +V GR Sbjct: 404 QIPEDVVKDRFDRLLREVQAIAAQVCSVHEGCVQT---ALVEAKSEHDDSMVTGRLSNNL 460 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + IG ++ VR+++ K GE V Sbjct: 461 LVHFKGSSELIGQLVDVRLSECKGFYYLGEQV 492 >gi|296117712|ref|ZP_06836296.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium ammoniagenes DSM 20306] gi|295969443|gb|EFG82684.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Corynebacterium ammoniagenes DSM 20306] Length = 488 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 159/441 (36%), Positives = 251/441 (56%), Gaps = 29/441 (6%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNV+DS R+ + GY + DL+V NTC +RE A +++Y LG ++ +K + Sbjct: 1 MNVHDSERISGLLEEAGYIAAEQEAEPDLVVFNTCAVRENADKRLYGSLGALKKVKENH- 59 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 + + V GC+AQ + + ++ +P V+ V G LP LLERAR ++ Sbjct: 60 ---PGMQIAVGGCLAQKDKDTVVSNAPWVDAVFGTHNMAALPTLLERARHNEKA---QVE 113 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 + D E V R+ +++I GC+ CTFC+VP RG E R ++ E + Sbjct: 114 IVDSLEAFPSVLPA-KRESSYAGWVSISVGCNNTCTFCIVPSLRGKEEDRRPGDILAEVQ 172 Query: 216 KLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271 L+D GV E+TLLGQNVN++ L +K FS LL ++ I+GL RLR+T+ HP Sbjct: 173 ALVDQGVTEVTLLGQNVNSYGVNFADPDLPRDKFAFSKLLRAVGAIEGLERLRFTSPHPA 232 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 + + +I A + + P LH+P+QSGSD++LK+M R + ++ +I+D +R P AI Sbjct: 233 EFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKNMRRSYRTKKFMRIVDEVREKMPHAAI 292 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KA 388 ++D IVGFPGET++DF+ TMD+V + ++ A++F+YSPR GTP + M EQV ++V + Sbjct: 293 TTDIIVGFPGETEEDFQGTMDIVRRARFSAAYTFQYSPRPGTPAATMDEQVPKHVVQERF 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQSV----VLN 441 ERL+ LQ ++ ++ N +G +E+L++ G+ EK +L GR+ + V V N Sbjct: 353 ERLIKLQDEIAAEE---NAKLIGTDVELLVQAEGRKNNEKHRLSGRARDGRLVHFAPVAN 409 Query: 442 ----SKNHNIGDIIKVRITDV 458 S+ GDI+ ITD Sbjct: 410 GEDISEQIRPGDIVHTTITDA 430 >gi|317504443|ref|ZP_07962422.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella salivae DSM 15606] gi|315664431|gb|EFV04119.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella salivae DSM 15606] Length = 444 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 161/453 (35%), Positives = 267/453 (58%), Gaps = 21/453 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GY+ + ++AD I LNTC +RE A K+Y+ L Sbjct: 3 KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSVRENAENKIYNRL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ K+G L++ V GC+A+ +++++ ++V GP +Y LP ++ Sbjct: 63 DTL----HAEQKKGRQLILGVLGCMAERVKDDLIKNHH-ASLVCGPDSYLNLPTMIAECE 117 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G VDTD S + + + G NR V+ F++I GC+ FC +C+VPYTRG E S Sbjct: 118 LGHAAVDTDLSTTETYRDVLPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPYTRGRERS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260 R + ++ E + L D G E+TLLGQNVN++ G +G++ +F++LL +++ Sbjct: 175 RDVESILAEVKDLHDKGFKEVTLLGQNVNSY-GLLPNGKRPENGTSFAELLRKVAQSVPD 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R+R+TTS+P DMS+ ++ A D L ++H P QSGS++ILK MNR++T +Y + Sbjct: 234 MRVRFTTSNPEDMSEDILHAIADEPNLCKHIHFPAQSGSNKILKLMNRKYTREDYLDKVA 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNML 379 I+ + P +++D VG+ ET++D T+ LV ++GY AF FKYS R GT ++ Sbjct: 294 AIKRIIPGCGLTTDIFVGYHNETEEDQEQTLSLVKEVGYDSAFMFKYSERPGTYAAKHLA 353 Query: 380 EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435 + V E VK R L+ LQ + +Q N G+ +L E+ K++ L+GR+ Sbjct: 354 DNVPEEVKIARLNQLIHLQTAISAEQ---NKKDEGREFVILTERFSKKDRHHLMGRTEQN 410 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++V++ NH+IG+ IKVRIT +TL+GE + Sbjct: 411 KAVIVEKGNHHIGEFIKVRITGSTSATLFGEEI 443 >gi|331001788|ref|ZP_08325310.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae oral taxon 107 str. F0167] gi|330412762|gb|EGG92145.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae oral taxon 107 str. F0167] Length = 475 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 164/449 (36%), Positives = 266/449 (59%), Gaps = 16/449 (3%) Query: 15 SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74 S+ +D+ P + V ++GCQMN DS ++ + GY + +DADL++ NTC +RE Sbjct: 26 SRAMDKGAYPT-YKVVTFGCQMNARDSEKLSGILSGIGYTEAENEEDADLVLFNTCTVRE 84 Query: 75 KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQT 132 A +++Y GR+ LK S+ K D++V + GC+ Q E E+I + V++V G Sbjct: 85 NANDRLY---GRVGQLKKSKEK-NHDMIVGICGCMMQEAEEVEKIKKSYRHVDLVFGTHN 140 Query: 133 YYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 Y+L E+L + K++++ S + E+L R+ + + I GC+ FC+ Sbjct: 141 IYKLAEILFDHLTTKKQIINVMESADMIVEKLP-----NKRQYAFKSGVNITFGCNNFCS 195 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 +C+VPY RG E SR +++DE + L+ +GV EI LLGQNVN++ G+GL+ E+ +F+ LL Sbjct: 196 YCIVPYVRGRERSRKPEEIIDEIKTLVADGVKEIMLLGQNVNSY-GRGLE-EEISFAGLL 253 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++EI+GL RLR+ T HP+D+SD +I+ + + +LHLP+QSGS ILK MNR +T Sbjct: 254 ERIAEIEGLERLRFMTPHPKDLSDEVIEVMKNNKKICKHLHLPLQSGSSAILKKMNRVYT 313 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 +Y ++ RI++ PDI++++D IVGFPGET+ DF T+++V ++ Y AF+F YS R Sbjct: 314 KEDYLNLVKRIKTAIPDISLTTDIIVGFPGETEGDFLDTLEVVKEVRYDSAFTFIYSKRS 373 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVG 430 GTP + M EQVD +R L K +++ G+ + L+E K+ +G L G Sbjct: 374 GTPAAKMEEQVDPKAIKDRFDRLLKTVQDIAAENTKKNEGKCMPALVEGKNEHMEGYLTG 433 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVK 459 + +V + IG+I+ V + + K Sbjct: 434 KLENNLTVHFKGQERLIGEIVDVILDEAK 462 >gi|291528925|emb|CBK94511.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium rectale M104/1] Length = 479 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 168/448 (37%), Positives = 252/448 (56%), Gaps = 16/448 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P +FVK++GCQMN DS ++ + GY N + +D IV NTC +RE A KVY Sbjct: 40 PMTYFVKTFGCQMNARDSEKLVGILEQIGYVEGND-EHSDFIVYNTCTVRENANNKVYGR 98 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL- 140 LG ++N K K+ + + + GC+ Q E I + V++V G ++ E+L Sbjct: 99 LGYLQNYK----KKNPLMKIALCGCMMQEPEVVENIKKHYKFVDIVFGTHNIFKFAEILC 154 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G +V+D E L + RK + + I GC+ FC++C+VPY RG Sbjct: 155 NNIESGSQVIDIWKDTNQIVEDLPV-----KRKFSFKSGVNIMFGCNNFCSYCIVPYVRG 209 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR ++ E KL+ +GVCEI LLGQNVN++ GK LD TF++LL +++I+GL Sbjct: 210 RERSREPKDIIREIEKLVADGVCEIMLLGQNVNSY-GKTLDN-PITFAELLREVNKIEGL 267 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHP+D+SD LI A + D + ++HLP+QSGS R+LK MNR + +Y + Sbjct: 268 KRIRFMTSHPKDLSDDLIMAIKECDKVCKHMHLPLQSGSSRVLKEMNRHYDKEKYLDEVK 327 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R PDIAI++D IVGFPGET++DF TMD+V ++ Y AF+F YS R GT + M Sbjct: 328 RLREQIPDIAITTDIIVGFPGETEEDFLETMDVVKQVRYDSAFTFIYSKRTGTRAATMEN 387 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVV 439 QV ++V +R L K+++ G+++ VL E+ +K G + GR V Sbjct: 388 QVPDDVVKDRFDRLLKEVQTISSEKAKCYEGKVVPVLAEEMDDQKDGYVTGRMDNNSIVH 447 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467 IG+I V++ + + GE+ Sbjct: 448 FPGTEDMIGNIYNVKLDECRGFYYMGEI 475 >gi|291536277|emb|CBL09389.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis M50/1] Length = 496 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 173/463 (37%), Positives = 258/463 (55%), Gaps = 34/463 (7%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P F V ++GCQMN DS ++ + G+ +S ++AD ++ NTC +RE A KVY Sbjct: 50 PLTFHVSTFGCQMNARDSEKLVGILEKIGFVEEDS-EEADFVIYNTCTVRENANNKVYGR 108 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141 LG + + K+ +++ + GC+ Q E+I + VN++ G Y+ EL+ Sbjct: 109 LGYLNGFQ----KKNPFMMIGLCGCMMQEPTVVEKIKQSYRFVNLIFGTHNIYKFAELIV 164 Query: 142 RAR----------FGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186 A G + DTD VED V+ Y+ K GV I GC Sbjct: 165 TALENSFPEHSSGHGTSMTIDIWKDTDKIVED-----LPVERKYSFKSGVN----IMFGC 215 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246 + FC++C+VPY RG E SR +++ E +L +GV EI LLGQNVN++ GK L+ + T Sbjct: 216 NNFCSYCIVPYVRGRERSREPKEIIREIERLAADGVVEIMLLGQNVNSY-GKNLE-QPMT 273 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F+ LL + ++ G+ R+R+ TSHP+D+SD LI+ + + +LHLP+QSGS RILK M Sbjct: 274 FAQLLQEIEKVDGIERIRFMTSHPKDLSDDLIEVMKNSKKICKHLHLPLQSGSSRILKLM 333 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 NRR+ Y +++D+IR+ PDIA+++D IVGFPGET++DF TMD+V K+ Y AF+F Sbjct: 334 NRRYDKEHYLELVDKIRAAVPDIALTTDIIVGFPGETEEDFEETMDVVRKVRYDSAFTFI 393 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 YS R GTP + M Q+ E+V R L K+++ A GQ + VLIE+ ++ Sbjct: 394 YSKRTGTPAAVMENQIPEDVIKARFDRLLKEVQTISAEKAGALTGQTLPVLIEEKNEQDA 453 Query: 427 KLV-GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 LV GR V L IG I+ V++ + K GE + Sbjct: 454 SLVTGRLSNNSVVHLPGTEDMIGKIVDVKLLECKGFYYMGESI 496 >gi|227824423|ref|ZP_03989255.1| RNA modification enzyme [Acidaminococcus sp. D21] gi|226904922|gb|EEH90840.1| RNA modification enzyme [Acidaminococcus sp. D21] Length = 441 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 162/447 (36%), Positives = 248/447 (55%), Gaps = 20/447 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + + +YGCQMN DS GYE + AD++V+NTC +RE A +K+ +G Sbjct: 5 YAIINYGCQMNESDSEHYAGQLLDLGYEASADYEHADVVVINTCCVRENAEKKILGKIGE 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 ++ LK +E D+++ VAGC+AQ G+++ ++ P V++V+G +L+ G Sbjct: 65 MKRLK----RENPDMVLCVAGCMAQEWGKDLQKKYPQVDLVLGTAHVNNFSSILQNHLAG 120 Query: 147 KRVVDTDYSVEDKFERLSIV----DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 E ++ L+I+ +G + RK A++ I GC+ FCT+C+VPY RG E Sbjct: 121 HG------RAESVYDDLTIMPQEFEGSFVRKSSFAAWVPIMYGCNNFCTYCIVPYVRGRE 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 SRS + E K + G E TLLGQNVN++ G D GE+ FS LL + I G+ Sbjct: 175 RSRSAEAICHEIEKAVALGYKEFTLLGQNVNSY---GKDRGEEEGFSKLLELVDAIPGVE 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+RY TSHPRDMS+ +++ + + H+PVQSGS RI+K+MNR + Y ++++ Sbjct: 232 RIRYMTSHPRDMSEAVVRTIAESQHICKNFHIPVQSGSSRIMKAMNRGYDRERYLKLVET 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR PD I++D IVGFPGET+ DF T+DL+ + Y AF+F YSPR GTP + Q Sbjct: 292 IRRCVPDAVITTDLIVGFPGETEKDFEETLDLLRTVEYDDAFTFIYSPRKGTPAAGFGAQ 351 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V + VK ERL L E + N VG+ + V++E K ++ +VL Sbjct: 352 VPDAVKHERLDRLMALQNEICLKRNKRLVGRTLAVMVEGPSKSNPAMLSGRTDGNDLVLW 411 Query: 442 SK--NHNIGDIIKVRITDVKISTLYGE 466 K +H GD++ V++ + + G+ Sbjct: 412 PKIRDHAPGDLVNVKMERAQTWLIRGK 438 >gi|294790986|ref|ZP_06756144.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Scardovia inopinata F0304] gi|294458883|gb|EFG27236.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Scardovia inopinata F0304] Length = 483 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 156/410 (38%), Positives = 245/410 (59%), Gaps = 31/410 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVN----SMDDADLIVLNTCHIREKAAEKVYS 82 ++V + GCQMNV+DS R+ + + GY + +D DLIV+NTC +RE A+ ++Y Sbjct: 31 YYVHTLGCQMNVHDSERIAGVLEADGYVKATRRQIENNDLDLIVMNTCAVRENASNRMYG 90 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LG+ LK +E L + V GC+AQ + I++R+P V+ V G + L LL++ Sbjct: 91 TLGQWAELK----RERPGLQIAVGGCMAQKDRRRIVQRAPWVDAVFGTKNIGSLTGLLKK 146 Query: 143 ARFGKR-----VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 AR R D DY +L R V++++ I GC+ CTFC+VP Sbjct: 147 ARLENRSQVQVATDLDYFPS----QLPAA-----RASRVSSWVAISVGCNNTCTFCIVPS 197 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG E R ++DE ++ +D G EITLLGQNVN++ G++ FS LL + +I Sbjct: 198 VRGKERDRRPGDILDEIQRCVDAGAKEITLLGQNVNSYGYS--TGDRYAFSKLLRACGKI 255 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 GL R+R+T+ HP +D +I+A + D +M LH+P+QSGSDRIL++M R + ++ Sbjct: 256 DGLKRVRFTSPHPAAFTDDVIEAMAETDNVMHQLHMPLQSGSDRILRAMRRSYRVSRFKG 315 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 IID++R+ PD I++D IVGFPGET+DDF+ TMDL+ +I ++ A++F+YSPR GTP + Sbjct: 316 IIDKVRAAMPDAQITTDIIVGFPGETEDDFQQTMDLLRQIRFSSAYTFEYSPRPGTPAA- 374 Query: 378 MLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 ++EQ+ V + RL +Q+ + Q++ +G+ +EVL+ G++ Sbjct: 375 LMEQIPPEVMRDRYTRLHDMQETITAQEMQ---KFLGRTVEVLVTGQGRK 421 >gi|323448466|gb|EGB04364.1| hypothetical protein AURANDRAFT_32629 [Aureococcus anophagefferens] Length = 494 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 175/464 (37%), Positives = 262/464 (56%), Gaps = 27/464 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + + + GCQMN DS R+E G A+++VLNTC IRE A KVYS++G Sbjct: 30 YAMVTMGCQMNAADSERLEGSLRQLGLVEAPDPKLANVVVLNTCSIREHAETKVYSYVG- 88 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-F 145 + R + G D+ +VVAGCVAQ EG +LRR+P V+VV+GPQ RLP++LERA Sbjct: 89 ---PQAKRKRNGEDVTIVVAGCVAQQEGARLLRRAPEVDVVMGPQYANRLPDVLERAMVH 145 Query: 146 GKRVVDTDYSVEDKFERLSI------VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G++V T S + R GV A++TI GC++ CT+CVVP TR Sbjct: 146 GEQVAATSASYGATSTSSAASGAALDAPTAPRRASGVVAWVTITHGCNERCTYCVVPNTR 205 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK- 258 G+E SR+ +++ E L + G E+TLLGQNV+A+ G+ + + F DLL +++++ Sbjct: 206 GVEQSRAPDEILAEIDDLGNRGYREVTLLGQNVDAY-GRDMRPRR-HFHDLLAAVADVAR 263 Query: 259 --GLVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 G +R+R+ TSHPR ++D +I A D DV+MP H+P QSG D +L+ M R +TA Y Sbjct: 264 RHGDMRVRFVTSHPRYITDAVIDAVADHGDVIMPVFHMPAQSGDDAMLRLMGRGYTADRY 323 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 R I+ +IR PD ISSDFIVG PGE++ F AT+ L+D + + + YSPR GTP Sbjct: 324 RSIVAKIRKRLPDATISSDFIVGCPGESEAAFEATLALMDDVEFDACMTAAYSPRPGTPM 383 Query: 376 SNMLEQV--------DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKG 426 ++ D++VK +RL + K + +G++ VL+E ++ + Sbjct: 384 AHWDGAADAFATLGCDDDVKEDRLRRINAKSDAHVKRRAERYLGRVEPVLVEQRNTRAPT 443 Query: 427 KLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDVKISTLYGELVV 469 ++VGR+ + V + +G + V IT+ +L G VV Sbjct: 444 QVVGRTRGNKLVFFEGDADDLVGRTVDVEITEANTFSLVGVRVV 487 >gi|257452434|ref|ZP_05617733.1| MIAB protein [Fusobacterium sp. 3_1_5R] gi|317058977|ref|ZP_07923462.1| adenosine tRNA methylthiotransferase [Fusobacterium sp. 3_1_5R] gi|313684653|gb|EFS21488.1| adenosine tRNA methylthiotransferase [Fusobacterium sp. 3_1_5R] Length = 435 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 166/443 (37%), Positives = 255/443 (57%), Gaps = 16/443 (3%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V +YGCQMNV +S +M+ +F + GYE + ++D I LNTC +RE AA ++Y LG + Sbjct: 6 VITYGCQMNVNESAKMKKIFENLGYEITEDIRESDAIFLNTCTVREGAATQIYGKLGELM 65 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFG 146 +K R ++ V GC AQ +G+E+L++ P++++V+G Q RLP+ +E + Sbjct: 66 QVKADR-----GSIIGVTGCFAQEQGKELLKKFPVIDIVMGNQNIGRLPQAIENIENQTE 120 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K VV T++ ED D G ++ TA + I GC+ FCTFC+VPY RG E S Sbjct: 121 KHVVFTNH--EDDLPPRLDADFGSDQ----TASIAISYGCNNFCTFCIVPYVRGRERSVP 174 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++V + + + G EI LLGQNVN++ +G+ TF+ LL + +++G +R+ Sbjct: 175 LEEIVRDVDQYVKKGAKEIMLLGQNVNSYGHDFKNGD--TFAKLLTEICKVEGDFIVRFV 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + HPRD +D +I+ D + LHLP+QSGS +ILK MNR +T +Y + +I+ Sbjct: 233 SPHPRDFTDDVIEVIAKEDKIAKCLHLPLQSGSSQILKRMNRGYTKEQYLALAHKIQDKI 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 +A+++D IVGFPGET++DF T+++V +I Y AF F YS R GT + M EQ+ E++ Sbjct: 293 SGVALTTDIIVGFPGETEEDFLDTLEVVREINYDNAFMFMYSIRQGTRAATMKEQIPEDI 352 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNH 445 K ERL L + G+ + VL+E K+ K L GR+ + V+ Sbjct: 353 KKERLQRLMDVQARCSYKESQKYQGKTVRVLVEGESKKNKEVLSGRTSTNKIVLFQGPIS 412 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 G + V I + K TLYG+LV Sbjct: 413 LKGSFVDVEIYECKTWTLYGKLV 435 >gi|229817424|ref|ZP_04447706.1| hypothetical protein BIFANG_02686 [Bifidobacterium angulatum DSM 20098] gi|229785213|gb|EEP21327.1| hypothetical protein BIFANG_02686 [Bifidobacterium angulatum DSM 20098] Length = 484 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 160/408 (39%), Positives = 248/408 (60%), Gaps = 27/408 (6%) Query: 23 VPQR----FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIRE 74 VP R F+V + GCQMNV+DS R+ + GY E D DLIV+NTC +RE Sbjct: 23 VPARGKGVFYVHTLGCQMNVHDSERIAGVLEQAGYVPATEEQYLDHDIDLIVMNTCAVRE 82 Query: 75 KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134 AAE++Y +G N+K R +L + V GC+AQ + E+I +++P V+ V G + Sbjct: 83 NAAERMYGTIGLWANMKRER----PNLQIAVGGCMAQLDREKIAKKAPWVDAVFGTKNIG 138 Query: 135 RLPELLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193 LP+LL++AR G V + +L +R V++++ I GC+ CTFC Sbjct: 139 SLPQLLDQARIQGHAQVKVQEDLNYFPSQLPT-----DRASKVSSWVAISVGCNNTCTFC 193 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 +VP TRG E R ++ E R+ +D G EITLLGQNVN++ G G+ G++ FS LL + Sbjct: 194 IVPTTRGKEHDRRPGDILAEIRQCVDEGAKEITLLGQNVNSF-GYGI-GDRFAFSKLLRA 251 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 +I+GL R+R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + Sbjct: 252 CGDIEGLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSA 311 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 ++ I+ +IR PD IS+D IVGFPGET++DF+ T+ +V++ ++ AF+F YSPR GT Sbjct: 312 KFLDILRKIRQAMPDAQISTDIIVGFPGETEEDFQETLRVVEEARFSSAFTFIYSPRPGT 371 Query: 374 PGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 P + M EQ+ +V + +RL+ LQ+++ E+ + + G+ +EV++ Sbjct: 372 PAAQM-EQLPHDVVQDRFDRLVALQERITEENLKTFE---GRDVEVMV 415 >gi|332884749|gb|EGK05005.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Dysgonomonas mossii DSM 22836] Length = 456 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 161/446 (36%), Positives = 254/446 (56%), Gaps = 9/446 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY + +++AD + +NTC IR+ A ++V L Sbjct: 18 KKLFIETYGCQMNVADSEVVASVMQMDGYTMTDKLEEADAVFVNTCSIRDNAEQRVIQRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 LK K+ ++++ V GC+A+ EE L V+VVVGP Y LP L+ A Sbjct: 78 DYFNALKR---KKKPNMIIGVLGCMAERVKEE-LHDKHHVDVVVGPDAYLDLPNLVGAAE 133 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + ++ S + ++ + + G N ++ F++I GCDK C++C+VPYTRG E S Sbjct: 134 NGNKAINVQLSKTETYKDVIPLRIGGNH---ISGFISIMRGCDKVCSYCIVPYTRGRERS 190 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS +++E L D G E TLLGQNVN++R DG F LL ++ +R+R Sbjct: 191 RSPQSILNELENLRDKGFKEATLLGQNVNSYRFTNEDGSVVDFPALLEMTAKAAPKMRIR 250 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTS+P DM+D ++ D L ++HLPVQSGS ++L M R++ Y I+ I+ Sbjct: 251 FTTSYPTDMTDETLEVIAKYDNLCKFIHLPVQSGSSKMLNVMKRKYDREWYLNRIEAIKR 310 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVD 383 + P IS+D + GF ET++D + T+ L+ ++ + AF FKYS R GT S LE + Sbjct: 311 IIPGCGISTDIMCGFHSETEEDQQETLSLMREVCFDSAFMFKYSERPGTYASKKLEDDIP 370 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442 E+VK +RL + E + N VG++ EVL+E K + +L GR+ + V+ + Sbjct: 371 EDVKIKRLQEIIDLQNECSLESNKRDVGKVFEVLVEGFSKRSREQLFGRTSQNKVVIFDK 430 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 NH IGD + V++T +TL+GE + Sbjct: 431 GNHRIGDFVTVKVTGNTSATLFGEAI 456 >gi|37523584|ref|NP_926961.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gloeobacter violaceus PCC 7421] gi|81708482|sp|Q7NE65|MIAB_GLOVI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|35214589|dbj|BAC91956.1| glr4015 [Gloeobacter violaceus PCC 7421] Length = 441 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 164/439 (37%), Positives = 260/439 (59%), Gaps = 20/439 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GCQMN DS RM GY V+ D ADL++ NTC IR+ A +KVYS+LG+ Sbjct: 16 TFGCQMNKADSERMAGALTHLGYRIVDESDTADLVLFNTCTIRDNAEQKVYSYLGQ---- 71 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + R + + +V+AGCVAQ EGE++LRR P +++V+GPQ RL +LLER G++VV Sbjct: 72 QARRKQRDPHITLVLAGCVAQQEGEKLLRRVPELDLVMGPQHVNRLSDLLERVAEGEQVV 131 Query: 151 DTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 T E + I++ +R VTA+ I GC++ CT+C+VP RG E SR+ Sbjct: 132 AT--------EPIEILEDITKPRRDSAVTAWANIIYGCNEGCTYCIVPSVRGREQSRTPE 183 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 + E +L +G E+TLLGQN++A+ G+ + + LL + G+ RLR+ TS Sbjct: 184 AIKAEICELGASGYKEVTLLGQNIDAY-GRDIG---TNLASLLRFIHNAPGIERLRFATS 239 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 HPR SD LI +L + + H+P QSG + +L+ M R +T +YR II++IR++ PD Sbjct: 240 HPRYFSDELIATCAELPKVCEHFHIPFQSGDNEVLRRMARGYTHEKYRAIIEKIRAILPD 299 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 AIS+D IVGFPGET+ F ++ LVD++ + + YSPR GTP + Q+D+ VK Sbjct: 300 AAISADLIVGFPGETEAQFENSLRLVDELEFDALNTAAYSPRPGTPAARWPGQLDDEVKQ 359 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHNI 447 +RL + + ++ + +G+ +VL+E+ + +++ ++VGR+ + V + + Sbjct: 360 DRLQRTNRLVAQKAFERSQRYLGRTEQVLVEETNPRDRSQVVGRTRTNRLVFFAGELAKL 419 Query: 448 -GDIIKVRITDVKISTLYG 465 G ++ V+IT + +L G Sbjct: 420 RGQLVDVQITAARAFSLTG 438 >gi|295110088|emb|CBL24041.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus obeum A2-162] Length = 478 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 169/456 (37%), Positives = 261/456 (57%), Gaps = 31/456 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P + + ++GCQMN S + + GY R ++ ++AD+++ NTC +RE A KVY Sbjct: 41 PLTYCLTTFGCQMNEKQSEAVAGIMDEIGYVRQDN-EEADVVLYNTCTVRENANLKVYGR 99 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL- 140 LG + +LK+ D+ +++ GC+ Q + ++I + P V++V G ++ EL Sbjct: 100 LGHLHSLKD----RNPDMKIILFGCMMQEQHVVDKIRKSYPFVDLVFGTHNIFKFAELFY 155 Query: 141 ERARFGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 E + +++++ TD VED + Y K GV I GC+ FC++C+VP Sbjct: 156 EMLQSDQQIINIWEGTDQIVED-----LPTERNYTFKSGVN----IMFGCNNFCSYCIVP 206 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 Y RG E SR +V E ++L+ +GV E+ LLGQNVN++ GK L+ TF+ LL L + Sbjct: 207 YVRGRERSREPEAIVKEVKRLVADGVSEVMLLGQNVNSY-GKTLE-HPVTFAQLLEMLED 264 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 ++GL R+R+ TSHP+D+SD LI+ + +LHLP+QSGS RILK MNR + +Y Sbjct: 265 VEGLKRIRFMTSHPKDLSDELIETMAKSKKICHHLHLPLQSGSSRILKIMNRCYDKEKYL 324 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++++IR PDI++++D IVGFPGET++DFR T+D+V K GY AF+F YS R TP + Sbjct: 325 NLVEKIRKAIPDISLTTDIIVGFPGETEEDFRETLDVVAKCGYDTAFTFLYSKRSDTPAA 384 Query: 377 NMLEQVDENVKAER----LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 M QV ++V ER L +QK+ R + F + EVL+E+ KEKG GR+ Sbjct: 385 AMENQVPQDVAKERFNRLLALVQKEGRTRSSRFE----ASVQEVLVEEESKEKGIFTGRT 440 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V +G +KV + + G LV Sbjct: 441 EYNLLVHFPGSADLLGKYVKVSLDECHGFYYMGSLV 476 >gi|332828703|gb|EGK01395.1| Dimethylallyladenosine tRNA methylthiotransferase miaB [Dysgonomonas gadei ATCC BAA-286] Length = 456 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 163/446 (36%), Positives = 258/446 (57%), Gaps = 9/446 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY + ++DAD + +NTC IR+ A ++V L Sbjct: 18 KKLFIETYGCQMNVADSEVVASVMQMDGYTMTDKLEDADAVFVNTCSIRDNAEQRVIQRL 77 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 LK K+ ++++ V GC+A+ EE L V+VVVGP Y LP L+ A Sbjct: 78 DYFNALKR---KKKPNMIIGVLGCMAERVKEE-LHDKHHVDVVVGPDAYLDLPNLVGAAE 133 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ ++ S + ++ + + G N ++ F++I GCDK C++C+VPYTRG E S Sbjct: 134 SGEKAINVVLSKTETYKDVIPLRIGGNH---ISGFISIMRGCDKVCSYCIVPYTRGRERS 190 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +++E L D G E+TLLGQNVN++R + DG FS LL ++ +R+R Sbjct: 191 RLPQSILNEVADLRDKGFKEVTLLGQNVNSYRYENEDGTVVDFSRLLEIVALEAPKMRIR 250 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTS+P DM+D ++ D L ++HLPVQSGS R+L M R++ Y I+ I+ Sbjct: 251 FTTSYPTDMTDETLEVIAKYDNLCKFIHLPVQSGSSRMLNVMKRKYDREWYLNRIEAIKR 310 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVD 383 + P +S+D + GF ET++D + T+ L+ ++ + AF FKYS R GT + LE V Sbjct: 311 IIPGCGLSTDIMCGFHSETEEDQQETLSLMREVCFDSAFMFKYSERPGTFAAKKLEDDVP 370 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNS 442 E+VK +RL + + E + N +G++ EVL+E K K +L GR+ + V+ + Sbjct: 371 EDVKIKRLQEIIELQNECSLESNKRDIGKVFEVLVEGFSKRSKEQLFGRTSQNKVVIFDK 430 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 +H IGD + VRIT +TL+GE + Sbjct: 431 GSHRIGDFVTVRITGNTSATLFGEAI 456 >gi|154488819|ref|ZP_02029668.1| hypothetical protein BIFADO_02127 [Bifidobacterium adolescentis L2-32] gi|154082956|gb|EDN82001.1| hypothetical protein BIFADO_02127 [Bifidobacterium adolescentis L2-32] Length = 484 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 159/400 (39%), Positives = 243/400 (60%), Gaps = 23/400 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82 F+V + GCQMNV+DS R+ + + GY E D DLIV+NTC +RE AAE++Y Sbjct: 31 FYVHTLGCQMNVHDSERIAGVLEADGYVPATEEQYLNHDIDLIVMNTCAVRENAAERMYG 90 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G LK R +L + V GC+AQ + E+I +++P V+ V G + LP+LL++ Sbjct: 91 TIGLWAELKRER----PNLQIAVGGCMAQLDREKIAKKAPWVDAVFGTKNIGSLPQLLDQ 146 Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A G V + +L +R V++++ I GC+ CTFC+VP TRG Sbjct: 147 ACIEGHAQVKVQEELNYFPSQLPT-----DRASKVSSWVAISVGCNNTCTFCIVPTTRGK 201 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E R ++ E R+ +D G E+TLLGQNVN++ G G+ G++ FS LL + EI GL Sbjct: 202 EHDRRPGDILAEIRQCVDEGAKEVTLLGQNVNSF-GYGI-GDRFAFSKLLRACGEIDGLE 259 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + ++ I+ + Sbjct: 260 RVRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRK 319 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR PD IS+D IVGFPGET++DF+ T+ +V++ +A AF+F YSPR GTP + M EQ Sbjct: 320 IREAMPDAQISTDIIVGFPGETEEDFQETLRVVEEARFASAFTFIYSPRPGTPAAEM-EQ 378 Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 V +V + ERL+ LQ+++ E+ + + G+ +EV++ Sbjct: 379 VPHDVVQDRFERLVALQERITEENLKTFE---GRDVEVMV 415 >gi|238924014|ref|YP_002937530.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium rectale ATCC 33656] gi|238875689|gb|ACR75396.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium rectale ATCC 33656] Length = 479 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 169/449 (37%), Positives = 253/449 (56%), Gaps = 18/449 (4%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYS 82 P +FVK++GCQMN DS ++ + GY V D+ +D IV NTC +RE A KVY Sbjct: 40 PMTYFVKTFGCQMNARDSEKLVGILEQIGY--VEGTDEHSDFIVYNTCTVRENANNKVYG 97 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140 LG ++N K K+ + + + GC+ Q E I + V++V G ++ E+L Sbjct: 98 RLGYLQNYK----KKNPLMKIALCGCMMQEPEVVENIKKHYKFVDIVFGTHNIFKFAEIL 153 Query: 141 -ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G +V+D E L + RK + + I GC+ FC++C+VPY R Sbjct: 154 CNNIESGSQVIDIWKDTNQIVEDLPV-----KRKFSFKSGVNIMFGCNNFCSYCIVPYVR 208 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR ++ E KL+ +GVCEI LLGQNVN++ GK LD TF++LL +++I+G Sbjct: 209 GRERSREPKDIIREIEKLVADGVCEIMLLGQNVNSY-GKTLDN-PITFAELLREVNKIEG 266 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+ TSHP+D+SD LI A + D + ++HLP+QSGS R+LK MNR + +Y + Sbjct: 267 LKRIRFMTSHPKDLSDDLIMAIKECDKVCKHMHLPLQSGSSRVLKEMNRHYDKEKYLDEV 326 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R+R PDIAI++D IVGFPGET++DF TMD+V ++ Y AF+F YS R GT + M Sbjct: 327 KRLREQIPDIAITTDIIVGFPGETEEDFLETMDVVKQVRYDSAFTFIYSKRTGTRAATME 386 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438 QV ++V +R L K+++ G+++ VL E+ +K G + GR V Sbjct: 387 NQVPDDVVKDRFDRLLKEVQTISSEKAKCYEGKVVPVLAEEMDDQKDGYVTGRMDNNSIV 446 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467 IG+I V++ + + GE+ Sbjct: 447 HFPGTEDMIGNIYNVKLDECRGFYYMGEI 475 >gi|291524754|emb|CBK90341.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium rectale DSM 17629] Length = 479 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 169/449 (37%), Positives = 253/449 (56%), Gaps = 18/449 (4%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYS 82 P +FVK++GCQMN DS ++ + GY V D+ +D IV NTC +RE A KVY Sbjct: 40 PMTYFVKTFGCQMNARDSEKLVGILEQIGY--VEGADEHSDFIVYNTCTVRENANNKVYG 97 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL 140 LG ++N K K+ + + + GC+ Q E I + V++V G ++ E+L Sbjct: 98 RLGYLQNYK----KKNPLMKIALCGCMMQEPEVVENIKKHYKFVDIVFGTHNIFKFAEIL 153 Query: 141 -ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G +V+D E L + RK + + I GC+ FC++C+VPY R Sbjct: 154 CNNIESGSQVIDIWKDTNQIVEDLPV-----KRKFSFKSGVNIMFGCNNFCSYCIVPYVR 208 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR ++ E KL+ +GVCEI LLGQNVN++ GK LD TF++LL +++I+G Sbjct: 209 GRERSREPKDIIREIEKLVADGVCEIMLLGQNVNSY-GKTLDN-PITFAELLREVNKIEG 266 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+ TSHP+D+SD LI A + D + ++HLP+QSGS R+LK MNR + +Y + Sbjct: 267 LKRIRFMTSHPKDLSDDLIMAIKECDKVCKHMHLPLQSGSSRVLKEMNRHYDKEKYLDEV 326 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R+R PDIAI++D IVGFPGET++DF TMD+V ++ Y AF+F YS R GT + M Sbjct: 327 KRLREQIPDIAITTDIIVGFPGETEEDFLETMDVVKQVRYDSAFTFIYSKRTGTRAATME 386 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSV 438 QV ++V +R L K+++ G+++ VL E+ +K G + GR V Sbjct: 387 NQVPDDVVKDRFDRLLKEVQTISSEKAKCYEGKVVPVLAEEMDDQKDGYVTGRMDNNSIV 446 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467 IG+I V++ + + GE+ Sbjct: 447 HFPGTEDMIGNIYNVKLDECRGFYYMGEI 475 >gi|299142064|ref|ZP_07035198.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oris C735] gi|298576526|gb|EFI48398.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oris C735] Length = 444 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 161/453 (35%), Positives = 267/453 (58%), Gaps = 21/453 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GY+ + ++AD I LNTC IRE A K+Y+ L Sbjct: 3 KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSIRENAENKIYNRL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ K+G L++ V GC+A+ +++++ ++V GP +Y LP ++ Sbjct: 63 DTL----HAEQKKGRQLILGVLGCMAERVKDDLIKNHH-ASLVCGPDSYLNLPTMIAECE 117 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G VDT+ S + + + G NR V+ F++I GC+ FC +C+VPYTRG E S Sbjct: 118 LGHATVDTNLSTTETYRNVLPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPYTRGRERS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260 R + ++ E + L D G E+TLLGQNVN++ G +G++ +F++LL +++ Sbjct: 175 RDVESILAEVKDLHDKGFKEVTLLGQNVNSY-GLLPNGKRPENGTSFAELLRKVAQSVPD 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R+R+TTS+P DM++ ++ A + L ++H P QSGSD+ILK MNR++T EY + Sbjct: 234 MRVRFTTSNPEDMTEDILHAIAEEPNLCKHIHFPAQSGSDKILKLMNRKYTREEYLDKVA 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379 I+ + P +++D VG+ ET++D + T+ LV ++G+ AF FKYS R GT + L Sbjct: 294 AIKRIIPGCGLTTDIFVGYHDETEEDQQLTLSLVKEVGFDSAFMFKYSERPGTYAAKHLP 353 Query: 380 EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435 + V E VK R L+ LQ + +Q N G +L E+ K++ L+GR+ Sbjct: 354 DNVSEEVKIARLNELIHLQTAISGEQ---NKKDEGSEFVILTERFSKKDRNHLMGRTEQN 410 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++V++ NH+IG+ IKVRIT +TL+GE + Sbjct: 411 KAVIIEKGNHHIGEFIKVRITGSTSATLFGEEI 443 >gi|323486941|ref|ZP_08092256.1| hypothetical protein HMPREF9474_04007 [Clostridium symbiosum WAL-14163] gi|323399713|gb|EGA92096.1| hypothetical protein HMPREF9474_04007 [Clostridium symbiosum WAL-14163] Length = 503 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 169/447 (37%), Positives = 258/447 (57%), Gaps = 30/447 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P F+ ++GCQMN +DS ++ + G+ S +++D ++ NTC +RE A ++VY Sbjct: 57 PMTCFISTFGCQMNAHDSEKLMGILLEAGFTEGQS-EESDFVLYNTCTVRENANQRVYGR 115 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLE 141 LG + +LK K+ +++ + GC+ Q E E L++S V+++ G Y+L ELL Sbjct: 116 LGYLNSLK----KKNPHMIISLCGCMMQEPEVVEKLKKSYRFVDIIFGTHNIYKLAELLS 171 Query: 142 RARFGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 G+++V DT VED RK + + I GC+ FC++C+VP Sbjct: 172 ERIDGRKMVIDIWKDTAKIVEDL---------PSERKYPFKSGVNIMFGCNNFCSYCIVP 222 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 Y RG E SR+ ++ E L+ +GV EI LLGQNVN++ GK L+ + TF++LL + + Sbjct: 223 YVRGRERSRNPEDIIREIEALVASGVVEIMLLGQNVNSY-GKNLE-KPITFAELLQQIEQ 280 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I+GL R+R+ TSHP+D+SD LI+ + +LHLP+QSGS RIL MNR++T +Y Sbjct: 281 IEGLERIRFMTSHPKDLSDELIEVMKHSRKICRHLHLPLQSGSSRILNLMNRKYTKEQYL 340 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 + +I+ PDI++++D IVGFPGET++DF TMD+V ++ Y AF+F YS R GTP + Sbjct: 341 TLAAKIKEAIPDISLTTDIIVGFPGETEEDFEETMDVVQRVRYDSAFTFIYSKRTGTPAA 400 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDAC---VGQIIEVLIEK-HGKEKGKLVGRS 432 +M +QV E+V ER + L+E Q C V + EVL+E+ E+G L GR Sbjct: 401 SMEDQVPEDVVKER---FDRLLKEVQAISAQVCGREVHTVQEVLVEEPDDHEEGFLTGRL 457 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVK 459 V IG I+KV + K Sbjct: 458 SNNTIVHFPGSRELIGKIVKVYLEQSK 484 >gi|317125291|ref|YP_004099403.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Intrasporangium calvum DSM 43043] gi|315589379|gb|ADU48676.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Intrasporangium calvum DSM 43043] Length = 510 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 168/461 (36%), Positives = 264/461 (57%), Gaps = 38/461 (8%) Query: 17 IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM------DDADLIVLNTC 70 + + ++P+ + V+++GCQMNV+DS R+ + + GY V ++ D AD++V NTC Sbjct: 1 MTTENMMPKTYDVRTHGCQMNVHDSERLAGLLETAGYVDVATVPVAQRPDVADVVVFNTC 60 Query: 71 HIREKAAEKVYSFLGRIR--NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128 +RE A K+Y LG++R L+N D+ + V GC+AQ + I+ R+P V+VV Sbjct: 61 AVRENADNKLYGNLGQLRPAKLRNP------DMQIAVGGCMAQKDRSTIVERAPWVDVVF 114 Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187 G LP LL RA KR V+ S+E L R + +++I GC+ Sbjct: 115 GTHNIGSLPALLARAAHNKRAEVEILESLETFPSTLPT-----RRDSAYSGWVSISVGCN 169 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCT 246 CTFC+VP RG E R +++ E L+ GV EITLLGQNVN + G++ G++ Sbjct: 170 NTCTFCIVPSLRGTEQDRRPGEILAEIEALVAQGVIEITLLGQNVNTY---GVEFGDRLA 226 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F LL + EI+GL R+R+T+ HP +D +I A + +MP LH+P+QSGSD +L+ M Sbjct: 227 FGKLLRACGEIEGLERVRFTSPHPAAFTDDVILAMAETPNVMPSLHMPLQSGSDTVLRQM 286 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + + + I+D +R PD AI++D IVGFPGET++DF+ T+D+V + ++ AF+F+ Sbjct: 287 RRSYRSARFLGILDTVREHIPDAAITTDIIVGFPGETEEDFQGTLDVVRQARFSSAFTFQ 346 Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE---- 419 YS R GTP + M +QV + V E RLL LQ+++ + N G+ +EVL+ Sbjct: 347 YSIRPGTPAATMSDQVPKAVVQERFDRLLALQEEVSWAE---NRRFEGREVEVLVAPAEG 403 Query: 420 KHGKEKGKLVGRSPWLQ----SVVLNSKNHNIGDIIKVRIT 456 + E ++ GR+ + +V S+ GD++ V +T Sbjct: 404 RKDSETQRMSGRARDNRLVHFAVPDGSERPRPGDLVTVGVT 444 >gi|323691989|ref|ZP_08106237.1| hypothetical protein HMPREF9475_01100 [Clostridium symbiosum WAL-14673] gi|323503912|gb|EGB19726.1| hypothetical protein HMPREF9475_01100 [Clostridium symbiosum WAL-14673] Length = 500 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 169/447 (37%), Positives = 258/447 (57%), Gaps = 30/447 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P F+ ++GCQMN +DS ++ + G+ S +++D ++ NTC +RE A ++VY Sbjct: 54 PMTCFISTFGCQMNAHDSEKLMGILLEAGFTEGQS-EESDFVLYNTCTVRENANQRVYGR 112 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLE 141 LG + +LK K+ +++ + GC+ Q E E L++S V+++ G Y+L ELL Sbjct: 113 LGYLNSLK----KKNPHMIISLCGCMMQEPEVVEKLKKSYRFVDIIFGTHNIYKLAELLS 168 Query: 142 RARFGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 G+++V DT VED RK + + I GC+ FC++C+VP Sbjct: 169 ERIDGRKMVIDIWKDTAKIVEDL---------PSERKYPFKSGVNIMFGCNNFCSYCIVP 219 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 Y RG E SR+ ++ E L+ +GV EI LLGQNVN++ GK L+ + TF++LL + + Sbjct: 220 YVRGRERSRNPEDIIREIEALVASGVVEIMLLGQNVNSY-GKNLE-KPITFAELLQQIEQ 277 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I+GL R+R+ TSHP+D+SD LI+ + +LHLP+QSGS RIL MNR++T +Y Sbjct: 278 IEGLERIRFMTSHPKDLSDELIEVMKHSRKICRHLHLPLQSGSSRILNLMNRKYTKEQYL 337 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 + +I+ PDI++++D IVGFPGET++DF TMD+V ++ Y AF+F YS R GTP + Sbjct: 338 TLAAKIKEAIPDISLTTDIIVGFPGETEEDFEETMDVVQRVRYDSAFTFIYSKRTGTPAA 397 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDAC---VGQIIEVLIEK-HGKEKGKLVGRS 432 +M +QV E+V ER + L+E Q C V + EVL+E+ E+G L GR Sbjct: 398 SMEDQVPEDVVKER---FDRLLKEVQAISAQVCGREVHTVQEVLVEEPDDHEEGFLTGRL 454 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVK 459 V IG I+KV + K Sbjct: 455 SNNTIVHFPGSRELIGKIVKVYLEQSK 481 >gi|183221201|ref|YP_001839197.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911292|ref|YP_001962847.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|229890556|sp|B0S9E2|MIAB_LEPBA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890557|sp|B0SS31|MIAB_LEPBP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|167775968|gb|ABZ94269.1| 2-methylthioadenine synthetase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779623|gb|ABZ97921.1| Putative tRNA-i(6)A37 modification enzyme MiaB [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 458 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 172/467 (36%), Positives = 274/467 (58%), Gaps = 28/467 (5%) Query: 15 SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74 SQ + I + +V++YGCQMN YDS ++++F + YE N ++++D+I LNTC +RE Sbjct: 8 SQTLTPTIQLGKVYVETYGCQMNEYDSGIVKELFRKEHYETTNVVEESDIIFLNTCAVRE 67 Query: 75 KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134 A K+Y L + LK K+ +L++ V GC+AQ GE++ + ++++VGP Y Sbjct: 68 NAHAKIYGRLQSLGYLK----KKNPNLVIGVLGCMAQNLGEDLFHQELPLDLIVGPDNYR 123 Query: 135 RLPELLERARFGKRVVD-TDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCT 191 LPEL++ R G++ V T S + ++ L +V+G + AF+TI GC+ FCT Sbjct: 124 TLPELIQNIRNGEKDVQLTRLSRSETYDELEPKVVNG-------IQAFVTIMRGCNNFCT 176 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 FCVVPYTRG E SR ++ E ++L + GV ++TLLGQNVN++ + D F L+ Sbjct: 177 FCVVPYTRGRERSREPKSIIHEIKQLQEMGVKQVTLLGQNVNSYSYESYD-----FCALV 231 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 S+ + + R+R+T+ HP+D D LI D +H+P+Q+GS ++L+ M R +T Sbjct: 232 ESILKETTIERVRFTSPHPKDFPDHLISLMAKEDRFSSQIHMPLQAGSSKVLRDMKRSYT 291 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY ++ +I+SV PDI I+SD IVGFPGET+++F T+++V K+ + ++ FKYS R Sbjct: 292 KEEYLDLVKKIQSVIPDIGITSDIIVGFPGETEEEFLETLEVVKKVKFDMSYMFKYSERE 351 Query: 372 GTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLV 429 GT ++ V E VK+ RL+ L + + + N + +G+I +LIE K+ K +L Sbjct: 352 GTIAKRKFIDDVPEEVKSRRLIELVELQTKISLEKNTSKIGKIFSILIENTSKKSKQELC 411 Query: 430 GRSPWLQSVVL-------NSKNHNIGDIIKVRITDVKISTLYGELVV 469 GRS + VV + IG + V I +TL G+L+V Sbjct: 412 GRSHCGRMVVFPIPEGMSQDLSDWIGKTVNVLIEQATSATLKGKLIV 458 >gi|310779250|ref|YP_003967583.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ilyobacter polytropus DSM 2926] gi|309748573|gb|ADO83235.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ilyobacter polytropus DSM 2926] Length = 437 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 158/445 (35%), Positives = 261/445 (58%), Gaps = 24/445 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV +S +++ + GY+ + ++D + LNTC +RE AA ++Y LG ++++ Sbjct: 9 TYGCQMNVNESAKIKRILQDMGYDITEDVSESDAVFLNTCTVREGAATQIYGKLGELKHI 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K R +++ V GC AQ +GEE+ ++ +++V+G Q ++P+ +E+ G Sbjct: 69 KEKR-----GMIIGVTGCFAQEQGEELAKKVKAIDIVMGNQNIGKIPQAIEKIESG---- 119 Query: 151 DTDY--SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 D Y V D+ E +D ++ K+ T++ TI GC+ FCT+C+VPY RG E S + Sbjct: 120 DFKYVIYVGDEDELPPRLDADFDSKK--TSYSTITYGCNNFCTYCIVPYVRGRERSVPMD 177 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 Q++DE + ++ G EI LLGQNVN++ GK + K F+ LL + +I+G +R+ + Sbjct: 178 QLLDEIKGFVEKGSKEIILLGQNVNSY-GKDFEN-KDNFAKLLEEICKIEGEFIVRFMSP 235 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 HPRD +D LI+ D + +HLP+Q+GS R+L MNR + EY + ++I+ P Sbjct: 236 HPRDFTDELIEVIAKNDKIARSMHLPIQAGSSRVLGLMNRGYKKEEYIALAEKIKRSIPG 295 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +I++D IVGFPGET++DF T+D+ ++ + A+ F YSPR GT + M Q+D+ K Sbjct: 296 SSITTDVIVGFPGETEEDFLDTIDVAKRVKFENAYMFMYSPRKGTKAAEMDGQIDQKTKK 355 Query: 389 E---RLLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 E RL+ +Q + +EQ VS+ +G I VL E ++ ++ VVL + Sbjct: 356 ERLHRLIEVQNAISKEQSVSY----IGSIQRVLAEGPSRKNPDVMCARTSTNKVVLFKGD 411 Query: 445 HNI-GDIIKVRITDVKISTLYGELV 468 + G+ I ++ITD TLYG++V Sbjct: 412 PELEGEFINLKITDANTWTLYGDIV 436 >gi|282856153|ref|ZP_06265436.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pyramidobacter piscolens W5455] gi|282585912|gb|EFB91197.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pyramidobacter piscolens W5455] Length = 435 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 166/443 (37%), Positives = 255/443 (57%), Gaps = 14/443 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 F +K YGCQMN YD+ ++ ++G YE + + AD I+ C IR+KA KV+S LG Sbjct: 4 FAMKVYGCQMNQYDADKIRTALVARGAYE--TAEEGADAIIFIGCSIRDKAEHKVWSELG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R ++ +V + GC+AQ G ++ RR P + VV GP+ +P+ LE A Sbjct: 62 HY----EERWRKERRPVVAMTGCIAQNVGVDMSRRYPWIRVVSGPRHIGLVPDALETAMS 117 Query: 146 G-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G +++V D +D E + R+ A + I GCD FCT+C+VPY RG S Sbjct: 118 GDEKIVLLD---DDPRELHELRFAPLERQFPWKASVMISHGCDNFCTYCIVPYVRGRFAS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS +++ EA +L++ GV EI LLGQNV+ + GK LD + +F+DLL ++ IKGL RLR Sbjct: 175 RSPREIMSEAEQLVEGGVKEICLLGQNVDTY-GKDLD--RYSFADLLNDVAHIKGLERLR 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TS+P D + ++ A + P ++LP+Q+GSDRILK+MNRR+T EY +++D IR Sbjct: 232 FMTSYPTDFTKDVVDAIAGNANICPAINLPIQAGSDRILKAMNRRYTVEEYAKVVDCIRC 291 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P++ ++SD IVGFP ET+DDF +M+ +++ + Q + YS R GTP + M +QV E Sbjct: 292 GLPEVGLTSDLIVGFPSETEDDFACSMEALERFRFDQVHTAAYSRRQGTPAAAMKDQVPE 351 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +VK RL + + E N VG+ VL++ + L GR+P + ++ Sbjct: 352 SVKNRRLNDVNRLQTEIAKDINKKLVGRRYRVLVDGRALKGNLLQGRNPADKVILFEGGE 411 Query: 445 HNIGDIIKVRITDVKISTLYGEL 467 IG + V +T +L G++ Sbjct: 412 SVIGTFVDVEVTAADSWSLKGKI 434 >gi|227499453|ref|ZP_03929564.1| tRNA 2-methylthioadenine synthetase [Anaerococcus tetradius ATCC 35098] gi|227218515|gb|EEI83758.1| tRNA 2-methylthioadenine synthetase [Anaerococcus tetradius ATCC 35098] Length = 448 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 165/450 (36%), Positives = 262/450 (58%), Gaps = 21/450 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + + ++GCQMN +DS R+ + S GY+++ + AD I+ NTC +RE A K+Y + Sbjct: 14 KTYNITTFGCQMNEHDSERISYILESLGYKKIQDRNKADFILFNTCLVRENAELKLYGQV 73 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 ++ LK KE D ++ V+GC+ Q + I+ + V+++ G + L +L+ R Sbjct: 74 SSLKKLK----KENPDKIIAVSGCMMQTSTARQVIIDKHKEVDIIFGTKNINSLADLIFR 129 Query: 143 -ARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 +RV+D TD +V+D F YN A++ I GCD FC++C+VP +R Sbjct: 130 YLETNERVIDISTD-NVKDDFVY-------YNTPNDFQAYVNIMTGCDNFCSYCIVPESR 181 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR S ++DE L+ G EITLLGQNVN++ G D + TF LL +S I+G Sbjct: 182 GREESRRPSSILDEVENLVSRGYKEITLLGQNVNSY-GNRADFD-MTFPALLEKISHIEG 239 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L RLR+TTSHP+D+SD LI + D + Y HLP+QSGS ++LK MNR++ +Y + Sbjct: 240 LKRLRFTTSHPKDLSDELIDVIKNNDNICNYFHLPLQSGSSKVLKDMNRKYDQEKYLERA 299 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R P IAIS+D IVG+P ET++DF+ T+ + +K+ Y A++FK+SPR T + L Sbjct: 300 LKLREEIPSIAISTDIIVGYPTETEEDFQETLKVCEKVKYDSAYTFKFSPRPKTRAAK-L 358 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438 + +D+ + +R L + N+ +G+ +EVL+E K + L GR+ + V Sbjct: 359 KTIDDAIVQDRFDRLLDTIYPIFNKKNEEYIGRTVEVLLESESKNNPQILTGRTDTFKLV 418 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG +KV+ITD T+ G+L+ Sbjct: 419 HVKADKKLIGQFVKVKITDNTSFTISGDLI 448 >gi|269795611|ref|YP_003315066.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sanguibacter keddieii DSM 10542] gi|269097796|gb|ACZ22232.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sanguibacter keddieii DSM 10542] Length = 557 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 158/420 (37%), Positives = 247/420 (58%), Gaps = 30/420 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD----LIVLNTCHIREKAAEKVYS 82 + V++ GCQMNV+DS M M GY+R + A ++V+NTC +RE AA ++Y Sbjct: 30 YVVRTLGCQMNVHDSEHMSGMLEQAGYQRATAEAAARDEADVVVINTCAVRENAATRLYG 89 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LG++ K R + + V GC+AQ + I+ R+P V+VV G LP LLER Sbjct: 90 NLGQLAGAKKRR----AGMQIAVGGCLAQKDRSTIVERAPWVDVVFGTHNLDALPVLLER 145 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRG 200 AR + + + E L + +R +++I GC+ CTFC+VP+ RG Sbjct: 146 ARH------NEAAQVEIAESLQVFPSTLPTRRESIYAGWVSISVGCNNTCTFCIVPHLRG 199 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259 E R QV+ E L+ G E+TLLGQNVN++ G++ G++ F+ LL + I G Sbjct: 200 KERDRRPGQVLAEVEALVAQGAVEVTLLGQNVNSY---GVEFGDRGAFAHLLRACGRIDG 256 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+T+ HP +D +I A + +MP LH+P+QSGSDR+L++M R + + + I+ Sbjct: 257 LERVRFTSPHPAAFTDDVIDAMAETHNVMPQLHMPLQSGSDRVLRAMRRSYRSDRFLGIL 316 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 DR+R+ P+ AI++D IVGFPGET+DDF T+ +V+ +A AF+F+YSPR GTP + + Sbjct: 317 DRVRAAIPEAAITTDLIVGFPGETEDDFAETLRVVEASRFASAFTFQYSPRPGTPAATLE 376 Query: 380 EQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG---KLVGRS 432 +Q+ + V + ERL+ LQ + ++ + VG+ +EVL+ E G++ G +L GR+ Sbjct: 377 DQLPKEVVQERYERLMALQDAVSARESARQ---VGRTVEVLVTEGAGRKDGATHRLTGRA 433 >gi|111225071|ref|YP_715865.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Frankia alni ACN14a] gi|123142677|sp|Q0RDX2|MIAB_FRAAA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|111152603|emb|CAJ64344.1| Putative 2-methylthioadenine synthetase [Frankia alni ACN14a] Length = 497 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 162/413 (39%), Positives = 239/413 (57%), Gaps = 20/413 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V+++GCQMNV+DS R+ + S GY +AD++V NTC +RE A ++Y LG+ Sbjct: 6 YEVRTFGCQMNVHDSERLSGLLESAGYVPAPPGSEADVVVFNTCAVRENADNRLYGNLGQ 65 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + +K K + + V GC+AQ + IL R+P V+VV G +RLP LLERAR Sbjct: 66 LVPVK----KGHPGMQIAVGGCLAQKDRSTILDRAPWVDVVFGTHNLHRLPVLLERARHN 121 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + F R +A+++I GCD CTFC+VP RG E R Sbjct: 122 AAAELEIAEALEVFPSSLPT----RRASHHSAWVSISVGCDNTCTFCIVPSLRGRERDRR 177 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 V+ E L+ G EITLLGQNVN++ G+ L G+ F+ LL + + GL R+R+T Sbjct: 178 PGDVLAEVEALVGEGALEITLLGQNVNSY-GRSL-GDPGAFAKLLLACGRVDGLERVRFT 235 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + HPRD +D +I+A + LH+P+QSGSD +L+ M R + + I++R+R+ Sbjct: 236 SPHPRDFTDDVIEAMAATPNVCHQLHMPLQSGSDDVLRRMRRSYRRDRFLGIVERVRAAM 295 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD AI++D IVGFPGET+ DF T+D+V + +A AF+F+YSPR GTP + M Q+D Sbjct: 296 PDAAITTDIIVGFPGETEADFADTLDVVRQARFAGAFTFQYSPRPGTPAATMDGQIDRTT 355 Query: 387 KAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRS 432 AE RL+ LQ ++ Q N VG+ +E+L+ E G++ G+L GR+ Sbjct: 356 VAERYARLVALQDEVSWAQ---NRELVGRRVELLVAEGEGRKDDATGRLSGRA 405 >gi|219114795|ref|XP_002178193.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409928|gb|EEC49858.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 455 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 161/413 (38%), Positives = 245/413 (59%), Gaps = 21/413 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYER----VNSMDDADLIVLNTCHIREKAAEKVYS 82 + +++ GCQMN+ DS R+E G V+ D+++LNTC IR+ A +KVYS Sbjct: 15 YKLETMGCQMNMADSERIEGQLQGLGIRPLDPDVDKNKQPDVVILNTCSIRDHAEQKVYS 74 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 ++G R ++G D+ ++VAGCVAQ EGE +LRR P V++V+GPQ R+ +LLE Sbjct: 75 YIG----PHAKRKRDGEDVTIIVAGCVAQQEGEALLRRVPEVDLVMGPQYANRIGDLLED 130 Query: 143 ARFGKRVVDTDYS--VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G +VV T+ S +ED + R+ V A++ + GC++ CTFC+VP TRG Sbjct: 131 VSNGNQVVATEASHIMEDSTK--------PRRQSTVAAWVNVIYGCNERCTFCIVPTTRG 182 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 +E SR +V E +L++ G EITLLGQN++A+ G+ + ++ FSDL+ + EI GL Sbjct: 183 VEQSRPAESIVREVTELVEQGFKEITLLGQNIDAY-GRDMIPKR-KFSDLIRIVGEIPGL 240 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR+ TSHPR MS ++ + + H+P QSGS+ IL +M R HT +Y I+D Sbjct: 241 DRLRFVTSHPRYMSLGVVDSVAETPAACECFHIPFQSGSNEILAAMGRGHTREKYLHIVD 300 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIRS PD AI++D IVGFPGET++ F T+ L+ ++ + + YSPR TP + + Sbjct: 301 RIRSRIPDAAITADVIVGFPGETEEQFEDTLSLMREVVFDSVNTAAYSPRPNTPAAVWDD 360 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS 432 QVD+ VK RL + E G+ +E+L+E+ + +++GR+ Sbjct: 361 QVDDAVKQNRLQRINALNLEHAAQRRARMKGRTVEILVEERNVRVPTQVMGRT 413 >gi|23465968|ref|NP_696571.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bifidobacterium longum NCC2705] gi|317482468|ref|ZP_07941485.1| MiaB family RNA modification enzyme [Bifidobacterium sp. 12_1_47BFAA] gi|81753721|sp|Q8G4H4|MIAB_BIFLO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|23326682|gb|AAN25207.1| widely conserved hypothetical protein in upf0004 [Bifidobacterium longum NCC2705] gi|316916128|gb|EFV37533.1| MiaB family RNA modification enzyme [Bifidobacterium sp. 12_1_47BFAA] Length = 480 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 160/408 (39%), Positives = 251/408 (61%), Gaps = 26/408 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81 F + + GCQMNV+DS R+ + + GY +++N +D DL+VLNTC +RE AAE++Y Sbjct: 27 FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQIND-NDLDLLVLNTCAVRENAAERMY 85 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 +GR +K R +L + V GC+AQ + ++I +P V+ V G + LP+LL+ Sbjct: 86 GTIGRFNRVKLVR----PNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLD 141 Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + R GK V + +L R +++++ I GC+ CTFC+VP TRG Sbjct: 142 QNRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRG 196 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E R ++DE R+ + +G E+TLLGQNVN++ G G+ G++ FS LL + I GL Sbjct: 197 KEKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGL 254 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + ++ I+ Sbjct: 255 ERVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILG 314 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR+ PD IS+D IVGFPGET++DF+ TMD+V + ++ AF+F YSPR GTP + M E Sbjct: 315 RIRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-E 373 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424 Q+ +V + +RL+ LQ+++ E+ ++ + G+ +EV+I K GK+ Sbjct: 374 QIPRDVVQDRFDRLVALQEQITEENLATFE---GRDVEVMITGKLGKK 418 >gi|322691385|ref|YP_004220955.1| hypothetical protein BLLJ_1196 [Bifidobacterium longum subsp. longum JCM 1217] gi|320456241|dbj|BAJ66863.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 480 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 160/408 (39%), Positives = 251/408 (61%), Gaps = 26/408 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81 F + + GCQMNV+DS R+ + + GY +++N +D DL+VLNTC +RE AAE++Y Sbjct: 27 FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQIND-NDLDLLVLNTCAVRENAAERMY 85 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 +GR +K R +L + V GC+AQ + ++I +P V+ V G + LP+LL+ Sbjct: 86 GTIGRFNRVKLVR----PNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLD 141 Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + R GK V + +L R +++++ I GC+ CTFC+VP TRG Sbjct: 142 QNRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRG 196 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E R ++DE R+ + +G E+TLLGQNVN++ G G+ G++ FS LL + I GL Sbjct: 197 KEKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGL 254 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + ++ I+ Sbjct: 255 ERVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILG 314 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR+ PD IS+D IVGFPGET++DF+ TMD+V + ++ AF+F YSPR GTP + M E Sbjct: 315 RIRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-E 373 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424 Q+ +V + +RL+ LQ+++ E+ ++ + G+ +EV+I K GK+ Sbjct: 374 QIPRDVVQDRFDRLVALQEQITEENLATFE---GRDVEVMITGKLGKK 418 >gi|328955566|ref|YP_004372899.1| RNA modification enzyme, MiaB family [Coriobacterium glomerans PW2] gi|328455890|gb|AEB07084.1| RNA modification enzyme, MiaB family [Coriobacterium glomerans PW2] Length = 456 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 168/449 (37%), Positives = 267/449 (59%), Gaps = 18/449 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +FV+++GCQMN++DS R+ + S G V + +AD++V TC +RE A ++Y G+ Sbjct: 15 YFVRTFGCQMNLHDSERVAGLLDSCGCLEVETPQEADIVVFMTCCVREAADVRLY---GQ 71 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +LK+ GG +V V GC+AQ +G ++L V+VV G + + +LL A Sbjct: 72 CSSLKSLSSPPGGRRIVAVGGCIAQRDGRDLLCNLDNVDVVFGTHSIAHVAQLLAAA--- 128 Query: 147 KRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 D V + E+ + D ++R+R A++ I GC+ FC++C+VPY RG E SR Sbjct: 129 --FEDESPHVRTRDQEKRAATDMPWSRRRTYHAWVPIMTGCNNFCSYCIVPYVRGRERSR 186 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +V+DE L +GV E+TLLGQNVN++ G+ G + F+ LL +++ G+ R+R+ Sbjct: 187 PADEVIDEVVGLARSGVREVTLLGQNVNSY-GRDSAG-RPRFAKLLREVADT-GIERIRF 243 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 T+SHP+D+ I+A DL +MP LHL VQSGS RIL MNRR++ Y ++IDR+R Sbjct: 244 TSSHPKDLLPETIEAMADLPAVMPQLHLAVQSGSSRILSLMNRRYSRESYLELIDRVRQR 303 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+IA+S+D IVGFPGE++DDF T+ LV + ++QAF+F YS R GTP + + + + Sbjct: 304 MPEIALSTDIIVGFPGESEDDFEETLSLVRSVRFSQAFTFIYSRRQGTPAAQIEDSTPRD 363 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSV---VLN 441 V +R L + + + + N+ +G+ + VLIE K+ ++ G+SP Q+V V + Sbjct: 364 VVLDRYNRLLRVVEQGALENNERDLGRTVPVLIEGSSKKNPDMLQGKSPKNQTVHAPVPD 423 Query: 442 SKNHN--IGDIIKVRITDVKISTLYGELV 468 + + +G I+ V I + L G +V Sbjct: 424 TADARRFVGSILDVTIKRARTWYLTGSVV 452 >gi|332654850|ref|ZP_08420592.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ruminococcaceae bacterium D16] gi|332516193|gb|EGJ45801.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ruminococcaceae bacterium D16] Length = 473 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 168/465 (36%), Positives = 261/465 (56%), Gaps = 22/465 (4%) Query: 12 HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71 H V+QI Q P FV +YGCQ N DS R+ GY + AD+IV+NTC Sbjct: 21 HAVAQINAQRPQPPLAFVDTYGCQQNEADSERIRGYLQEMGYGFTQDEEQADVIVINTCA 80 Query: 72 IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVG 129 IRE A ++V LG + ++K + L+ + GC+AQ +++ V++V G Sbjct: 81 IREHAEQRVLGNLGALVHVKRRHPGQ----LICLCGCMAQEAHVAQKVKESYRHVDLVFG 136 Query: 130 PQTYYRLPELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188 PQ +R PE + + RV T E + +V R+ V A+++I GC+ Sbjct: 137 PQVLWRFPEFIHSLLTARGRVFQTPDLPGSIAEGIPVV-----RQDKVKAWVSIMYGCNN 191 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248 FC++C+VPY RG E SR ++ E R+L++ G +ITLLGQNVN++ GK L+ F+ Sbjct: 192 FCSYCIVPYVRGRERSREPQDILAEVRQLVEEGYKDITLLGQNVNSY-GKDLEN-PMDFA 249 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 DLL ++EI G +R+ TSHP+D + L + + + P LHLP Q+G+DRILK MNR Sbjct: 250 DLLAKVNEIPGDFLIRFMTSHPKDATQKLFETMARCEKVAPVLHLPFQAGNDRILKVMNR 309 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 RHT +Y + I ++++ PDI ++SD IVGFPGET ++F T+ +++++ Y F+F YS Sbjct: 310 RHTREQYLEKIRALKALIPDIVLTSDVIVGFPGETTEEFEDTLKVLEEVRYDALFTFIYS 369 Query: 369 PRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE- 424 PR+GTP + M + + K RL+ LQ K+ E++ + A +G+ + LI+ G + Sbjct: 370 PRVGTPAAKMDDPMPREEKLANFNRLVALQDKISEEK---HAAYIGKTVRCLIDGQGDDA 426 Query: 425 KGKLVGRSPWLQSV-VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + R+P + V V ++G ++ I +LYGELV Sbjct: 427 EYPFTARTPGNRLVRVKGGTADDVGQFREIHIIGANKWSLYGELV 471 >gi|327404270|ref|YP_004345108.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Fluviicola taffensis DSM 16823] gi|327319778|gb|AEA44270.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Fluviicola taffensis DSM 16823] Length = 479 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 169/459 (36%), Positives = 263/459 (57%), Gaps = 27/459 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +V+SYGCQMN DS + + +GY ++D+AD++++NTC IRE A +V + L Sbjct: 29 KKLYVESYGCQMNFSDSEVVASIMTKEGYTTTRNIDEADVVLINTCSIRENAETRVRNRL 88 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + R E +L+V + GC+A+ + +L +V++V GP Y LP L++ Sbjct: 89 TEFK----KRKAEQPNLVVGILGCMAERLKQALLEEEQLVDLVAGPDAYRDLPNLIDEVG 144 Query: 145 FGKRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+R V+ S E+ + +S V D G GV+AF+TI GCD C+FCVVP+TRG E Sbjct: 145 TGQRAVNVLLSREETYADISPVRMDQG-----GVSAFVTITRGCDNMCSFCVVPFTRGRE 199 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR----GKGLDGEKC----TFSDLLYSL 254 SR +V E + L NG E+TLLGQNV+++R KG+ ++ F+ L+ + Sbjct: 200 RSRDPLTIVQECKDLFANGYREVTLLGQNVDSYRWNMSSKGVLKDETIPTTNFAQLMEMV 259 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 + I +R+R++TSHP+DM+D +++ + + PY+HLPVQSG+ +L+ MNR ++ Sbjct: 260 ALIHPDLRIRFSTSHPKDMTDDVLEMMAKYENICPYIHLPVQSGNSNVLERMNRGYSREW 319 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 Y + I I+ + PD AIS+D I GF GET+++ + T+ L+ ++GY A+ FKYS R T Sbjct: 320 YLERIAAIKRIIPDCAISTDIITGFCGETEEEHQETVSLMREVGYDFAYMFKYSERPKTL 379 Query: 375 GSNMLE-QVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429 E V E VK +RL + LQ K + + + VG+I +VL+E K + Sbjct: 380 AERKFEDDVPEEVKGKRLEEIIALQLK---NASAAHKSQVGKIAKVLVEGPSKRSAEHFS 436 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 GR VV + G + V+ITD +TL GELV Sbjct: 437 GRDGRNSKVVFPKGDSKKGQYVFVKITDYTSATLMGELV 475 >gi|189439139|ref|YP_001954220.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bifidobacterium longum DJO10A] gi|227547646|ref|ZP_03977695.1| possible tRNA 2-methylthioadenine synthetase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621252|ref|ZP_04664283.1| RNA modification enzyme [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132572|ref|YP_003999911.1| miab [Bifidobacterium longum subsp. longum BBMN68] gi|229890432|sp|B3DQX6|MIAB_BIFLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|189427574|gb|ACD97722.1| 2-methylthioadenine synthetase [Bifidobacterium longum DJO10A] gi|227211901|gb|EEI79797.1| possible tRNA 2-methylthioadenine synthetase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515713|gb|EEQ55580.1| RNA modification enzyme [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311773512|gb|ADQ03000.1| MiaB [Bifidobacterium longum subsp. longum BBMN68] Length = 484 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 160/408 (39%), Positives = 251/408 (61%), Gaps = 26/408 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81 F + + GCQMNV+DS R+ + + GY +++N +D DL+VLNTC +RE AAE++Y Sbjct: 31 FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQIND-NDLDLLVLNTCAVRENAAERMY 89 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 +GR +K R +L + V GC+AQ + ++I +P V+ V G + LP+LL+ Sbjct: 90 GTIGRFNRVKLVR----PNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLD 145 Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + R GK V + +L R +++++ I GC+ CTFC+VP TRG Sbjct: 146 QNRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRG 200 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E R ++DE R+ + +G E+TLLGQNVN++ G G+ G++ FS LL + I GL Sbjct: 201 KEKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGL 258 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + ++ I+ Sbjct: 259 ERVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILG 318 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR+ PD IS+D IVGFPGET++DF+ TMD+V + ++ AF+F YSPR GTP + M E Sbjct: 319 RIRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-E 377 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424 Q+ +V + +RL+ LQ+++ E+ ++ + G+ +EV+I K GK+ Sbjct: 378 QIPRDVVQDRFDRLVALQEQITEENLATFE---GRDVEVMITGKLGKK 422 >gi|189347647|ref|YP_001944176.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobium limicola DSM 245] gi|229890475|sp|B3EGT4|MIAB_CHLL2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|189341794|gb|ACD91197.1| RNA modification enzyme, MiaB family [Chlorobium limicola DSM 245] Length = 442 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 161/446 (36%), Positives = 254/446 (56%), Gaps = 21/446 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++ ++GCQMN DS + + GY++ +S ++A +I+LNTC +RE A E++ +L Sbjct: 6 RKFYIHTFGCQMNQADSGIIAALLEQDGYQQASSEEEAGIIMLNTCAVRENAVERIAHYL 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ K ++ +LLV + GC+ Q EE+ P+++ + GP TY LP L+ A Sbjct: 66 QHVKGFK----RKCPELLVGLTGCIPQYRREELFTVFPVIDFLAGPDTYRVLPVLIAEAG 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G R D++ + ++ ++ R + +TAF+ I GC+ C FCVVP+TRG E S Sbjct: 122 KG-RAARLDFNPFETYDGVT-----QARTQSLTAFVPIMRGCNNMCAFCVVPFTRGRERS 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 V+DE R L ++G EITLLGQNVN++ + FS LL ++S R+R Sbjct: 176 HPFGSVLDEVRALAESGCREITLLGQNVNSYHDSQSGAD---FSRLLDAVSREAPETRIR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP+DMS L++ + +LHLPVQSGS R+L MNR H +YR I+ +R Sbjct: 233 FTTSHPKDMSHSLVETMASRPNICNHLHLPVQSGSTRMLARMNRGHDIEDYRNKIELLRE 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVD 383 P I++S+D I GF GE+D D T++L+ ++ + AF F YS R GT M + V Sbjct: 293 RIPGISLSTDLIAGFCGESDADHCQTLELMREVRFDSAFMFYYSVRPGTLAARTMPDDVP 352 Query: 384 ENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVV 439 E VK +RL + LQ + + + +G ++EVL+E + +L+GR+ + VV Sbjct: 353 EEVKKQRLQEIIDLQNGISAELLRL---AIGSVVEVLVESESRRSSDQLMGRTGGNRVVV 409 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465 + H GD+++V IT +TL G Sbjct: 410 FDRGIHQPGDMVRVMITGSTSATLIG 435 >gi|282858916|ref|ZP_06268056.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella bivia JCVIHMP010] gi|282588298|gb|EFB93463.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella bivia JCVIHMP010] Length = 442 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 158/450 (35%), Positives = 261/450 (58%), Gaps = 15/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GY+ ++AD I LNTC IRE A K+Y+ L Sbjct: 2 KKLYIETYGCQMNVADSEVVASVMKMAGYDVCEKEEEADAIFLNTCSIRENAENKIYNRL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + K ++G DL++ V GC+A+ ++++ N+V GP +Y LP+++ + Sbjct: 62 ETLHAEK----RKGRDLILGVLGCMAERVRDDLIENH-YANLVCGPDSYLNLPDMIAQCE 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G D + S + + + G NR V+ F++I GC+ FC +C+VP+TRG E S Sbjct: 117 NGNNACDIELSTTETYRNIIPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260 R + ++ E + L G E+TLLGQNVN++ G +G++ +F++LL +++ Sbjct: 174 RDVESILQEVQDLKGRGFREVTLLGQNVNSY-GLLPNGKRPENGTSFAELLRKVAQSVPN 232 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R+R+TTS+P DM++ +++A D L ++H P QSGS+ +LK MNR++T EY + Sbjct: 233 MRVRFTTSNPEDMTEDILQAIADEPNLCHHIHFPAQSGSNSVLKDMNRKYTREEYLDKVA 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379 IR + PD +++D VG+ E+ +D + T+DL+ ++G+ AF FKYS R GT + L Sbjct: 293 AIRRIIPDCGLTTDIFVGYHNESLEDHQQTLDLMREVGFDSAFMFKYSERPGTYAAKHLP 352 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 + V E K RL L + N G+ ++LIE+ GK +L+GR+P ++V Sbjct: 353 DNVSEEEKVRRLNELIHLQTQISAEMNKKDEGKEFDILIERFGKRSHDQLMGRTPQNKAV 412 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V+ NH+IGD + VRI +TL GE + Sbjct: 413 VIPKGNHHIGDTVHVRIVSSSSATLIGEEI 442 >gi|150026019|ref|YP_001296845.1| hypothetical protein FP1979 [Flavobacterium psychrophilum JIP02/86] gi|229890536|sp|A6H119|MIAB_FLAPJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|149772560|emb|CAL44043.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 481 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 167/461 (36%), Positives = 257/461 (55%), Gaps = 26/461 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGC MN DS + + GY N +++ADL+++NTC IR+KA + + L Sbjct: 24 KKLFIESYGCAMNFSDSEIVASILSGNGYNTTNVLEEADLVLVNTCSIRDKAEQTIRKRL 83 Query: 85 GRIRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + +K N ++K G V GC+A+ ++ L IV++VVGP Y LP LL Sbjct: 84 EKYNAVKRINPKMKVG------VLGCMAERLKDKFLEEEKIVDLVVGPDAYKDLPNLLNE 137 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ ++ S ++ + +S V N G+TA + I GCD CTFCVVP+TRG E Sbjct: 138 VEEGRDAINVILSKDETYGDISPVRLMSN---GITALVAITRGCDNMCTFCVVPFTRGRE 194 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDG--------EKCT---FSD 249 SR ++ E + L G EITLLGQNV++ W G GL +K T F Sbjct: 195 RSREPQSIMAEIQDLWHKGFKEITLLGQNVDSYLWYGGGLKKDFTNASEIQKATAVDFDQ 254 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL ++ +R+R++TS+P+DM + ++ + ++HLPVQSGS+RILK MNR Sbjct: 255 LLEMVAVGFPKMRIRFSTSNPQDMHESILHVMAKHSNICKHIHLPVQSGSNRILKEMNRL 314 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 HT EY +ID+IR++ P+ +IS D I GFP ET++D + T+ L+ + Y + + YS Sbjct: 315 HTREEYMILIDKIRAIIPNASISQDMIAGFPTETEEDHQDTISLMQYVKYNFGYMYSYSE 374 Query: 370 RLGT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-K 427 R GT G M + V + +KA RL + ++ ++ +GQ +EVL+EK K+ + Sbjct: 375 RPGTLAGRKMKDDVSDEIKARRLQEIVDLQQKHAWWRSEDFIGQTVEVLVEKVSKKSTEE 434 Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 GR+ +VV +++ IGD + V+I TL GE V Sbjct: 435 FSGRNSQSITVVFPKEHYKIGDFVNVKIKSCTSGTLKGEAV 475 >gi|291516737|emb|CBK70353.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum subsp. longum F8] Length = 484 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 160/408 (39%), Positives = 251/408 (61%), Gaps = 26/408 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81 F + + GCQMNV+DS R+ + + GY +++N +D DL+VLNTC +RE AAE++Y Sbjct: 31 FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQIND-NDLDLLVLNTCAVRENAAERMY 89 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 +GR +K R +L + V GC+AQ + ++I +P V+ V G + LP+LL+ Sbjct: 90 GTIGRFNRVKLVR----PNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLD 145 Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + R GK V + +L R +++++ I GC+ CTFC+VP TRG Sbjct: 146 QNRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRG 200 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E R ++DE R+ + +G E+TLLGQNVN++ G G+ G++ FS LL + I GL Sbjct: 201 KEKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGL 258 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + ++ I+ Sbjct: 259 ERVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILG 318 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR+ PD IS+D IVGFPGET++DF+ TMD+V + ++ AF+F YSPR GTP + M E Sbjct: 319 RIRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-E 377 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424 Q+ +V + +RL+ LQ+++ E+ ++ + G+ +EV+I K GK+ Sbjct: 378 QIPRDVVQDRFDRLVALQEQITEENLATFE---GRDVEVMITGKLGKK 422 >gi|320527236|ref|ZP_08028422.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Solobacterium moorei F0204] gi|320132427|gb|EFW24971.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Solobacterium moorei F0204] Length = 477 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 247/446 (55%), Gaps = 16/446 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++F+ +YGCQ NV D + M GY N DDAD++ NTC IR+ A ++V S + Sbjct: 42 KKYFIHTYGCQANVRDGEALAGMMEMMGYTSTNVPDDADVLFFNTCAIRKAAEDRVLSDV 101 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-E 141 ++R LK R + + GC+AQ E + IL SP V+++ G +R+P LL E Sbjct: 102 NKLRYLKEQR----PTTVFCICGCMAQEEETVKRILSVSPHVDLIFGTHNIHRMPNLLAE 157 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + +R V+ D E + + R F+ I GCDKFCT+C+VPYTRG Sbjct: 158 VIQSNQRKVEVFSQEGDVVEDVPV-----KRSMDSKGFVNIMYGCDKFCTYCIVPYTRGR 212 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR + ++ E +L +G E+ LLGQNVNA+ GK L E F+ LL ++++ G+ Sbjct: 213 ERSRRMEDILREVEELKASGRKEVVLLGQNVNAY-GKDLKMED-GFTQLLVAVAKT-GIE 269 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+ + TSHPRD S I A D +MP+LHLPVQSGS+ +L+ M R +T Y+Q+ + Sbjct: 270 RISFYTSHPRDYSATTIDAMRDYPNIMPFLHLPVQSGSNEVLRRMARGYTVERYKQLYND 329 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 ++ P IA ++D IVGFP ETD++F AT+DLV + A++F YSPR GTP +NM + Sbjct: 330 LKKKVPHIAFTTDLIVGFPNETDEEFEATLDLVRYCRFDMAYAFIYSPRAGTPAANMEDN 389 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVL 440 + VK ERL L L E N +G+I+ VL K ++ G S + V Sbjct: 390 IPLEVKKERLARLNDLLTEIAEENNRRFLGEIVSVLCIGTSKRNSEVYSGYSKDNKLVNF 449 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466 S+ I I+ V IT L G+ Sbjct: 450 TSEKDCINQIVNVEITATHSYYLEGK 475 >gi|319955951|ref|YP_004167214.1| tRNA-i(6)a37 thiotransferase enzyme miab [Nitratifractor salsuginis DSM 16511] gi|319418355|gb|ADV45465.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nitratifractor salsuginis DSM 16511] Length = 434 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 165/446 (36%), Positives = 253/446 (56%), Gaps = 19/446 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GC MNV D+ M ++ + Y+ ++++ADLI++NTC +REK K++S Sbjct: 3 KKLYIETLGCAMNVRDTEHMIAELSRKEDYDLTENLEEADLIIINTCSVREKPVAKLFSE 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +GR R + KEG + VAGC A GEEI+RR+P V+ V+G + ++ ++L Sbjct: 63 IGRFRKQR----KEGAK--IGVAGCTASHLGEEIIRRAPYVDFVLGARNVSKITKVLNEK 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + V TDY S G R A + I GCDK CTFC+VP TRG EI Sbjct: 117 HAVE--VSTDYDE-------STYPFGEYRSNPFKAMVNISIGCDKKCTFCIVPATRGDEI 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLLYSLSEIKGLV 261 S S ++ E +K + G E+ LLGQNVN + R + E F++LL +S ++GL Sbjct: 168 SIPSSLILQEVKKAVQAGAKEVILLGQNVNNYGRRFSAGEDEVRNFTELLKRVSAVEGLE 227 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ + HP M D ++ + P +H+P+QSGS R+LK M R ++ + +R Sbjct: 228 RIRFQSPHPLHMDDAFLEEFASNPKICPQIHVPLQSGSTRLLKRMKRGYSKEWFLDRCER 287 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR++ P +AIS+D IVGFPGE+++DF TM++V+K+ + Q FSF+YSPR T + +Q Sbjct: 288 IRAMVPGVAISTDIIVGFPGESEEDFAETMEVVEKVRFDQMFSFRYSPRPMTAAAEYEDQ 347 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + E V AERL LQ + E A G+I EV E+ + ++ GRS + V + Sbjct: 348 IPETVAAERLKRLQSRQDEITDEIMAAQEGRIHEVYFEEL-RPGNRVAGRSADGRLVSVE 406 Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467 +G I+ VRIT +L GEL Sbjct: 407 GSEELLGKILPVRITRAMRRSLEGEL 432 >gi|282880437|ref|ZP_06289144.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella timonensis CRIS 5C-B1] gi|281305540|gb|EFA97593.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella timonensis CRIS 5C-B1] Length = 451 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 170/465 (36%), Positives = 262/465 (56%), Gaps = 36/465 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GYE ++AD I LNTC +RE A K+Y+ Sbjct: 2 KKLFIETYGCQMNVADSEVVASVMQMAGYELCEQEEEADAIFLNTCSVRENAENKIYN-- 59 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R+ L R K+G +L++ V GC+A+ +++L ++V GP +Y LP+++ +A Sbjct: 60 -RLDALHAER-KKGRNLILGVLGCMAERVKDDLLNNHH-TDLVCGPDSYLNLPDMMAQAE 116 Query: 145 FGKRVVDTDYSVEDKF-----ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G + +D + S + + +RL I V+ F++I GC+ FC +C+VPYTR Sbjct: 117 TGNKAIDIELSKTETYKDVVPQRLMI--------GKVSGFVSIMRGCNNFCHYCIVPYTR 168 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----------RGKGLDGEKCTFSD 249 G E SR + ++ E R L D EITLLGQNVN++ G+ + F Sbjct: 169 GRERSRDIESILREVRDLRDKHYKEITLLGQNVNSYCFTVPERQLDNGETIAAHTIDFPQ 228 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL ++ +R+R+T+SHP+DMSD + + + ++HLPVQSGS++ILK MNR+ Sbjct: 229 LLRRVAHEVPDIRIRFTSSHPKDMSDDTLHVIAEEPNVCKHIHLPVQSGSNKILKLMNRK 288 Query: 310 HTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 +T Y +DRIR+++ PD IS+D VG+ GET++D + ++ L+ +GY AF FK Sbjct: 289 YTVEWY---MDRIRAIQRIIPDCGISTDIFVGYHGETEEDHQLSLQLMRTVGYDSAFMFK 345 Query: 367 YSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-E 424 YS R GT S L + V E K RL + E N G+ EVL+E K Sbjct: 346 YSERPGTYASKHLPDNVPEEEKIRRLNEMIHLQTELSAISNKKDEGKEFEVLVEGFSKRS 405 Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + +L GR+ + VVL+ H+IG+ ++VRIT +TL+GE V Sbjct: 406 REQLCGRTEQNKMVVLDKGKHHIGETVRVRITRSTSATLFGEEVT 450 >gi|323343556|ref|ZP_08083783.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oralis ATCC 33269] gi|323095375|gb|EFZ37949.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oralis ATCC 33269] Length = 434 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 160/449 (35%), Positives = 260/449 (57%), Gaps = 21/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GY+ ++ +AD + LNTC +RE A K+Y+ Sbjct: 2 KKLYIETYGCQMNVADSEVVASVMKMAGYDVCDTESEADAVFLNTCSVRENAENKIYN-- 59 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R+ L R K+G +L++ V GC+A+ ++++ ++V GP +Y LP+++ +A Sbjct: 60 -RLDALHAER-KKGRELILGVLGCMAERVKDDLIENHH-ADLVAGPDSYLNLPDMIAQAE 116 Query: 145 FGKRVVDTDYSVEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G + +D + S + ++ + ++ G + F++I GCD FC +C+VPYTRG Sbjct: 117 TGNKAIDIELSKTETYKDVVPQRVILGK------IGGFVSIMRGCDNFCHYCIVPYTRGR 170 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR + ++ E L D E+TLLGQNVN++R + F LL ++E+ + Sbjct: 171 ERSRDIESILREVIDLRDKHYKEVTLLGQNVNSYRFGDI-----GFPQLLRRVAEVVPDM 225 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHP+DMSD + D+ + ++HLPVQSGS+++LK MNR++T Y + Sbjct: 226 RVRFTTSHPKDMSDETLHVIADMPNVCKHIHLPVQSGSNKVLKLMNRKYTREWYMDRVQA 285 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-E 380 IR + PD +S+D VG+ GET++D R ++ L+ ++GY AF FKYS R GT S L + Sbjct: 286 IRRIVPDCGLSTDIFVGYHGETEEDHRQSLSLMKEVGYDSAFMFKYSERPGTYASKHLPD 345 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV 439 V E K RL L E N G+ +VL+E K + +L GR+ + VV Sbjct: 346 NVSEEEKVRRLNELIHLQTELSAVSNKRDEGKEFDVLVEGFSKRSRSQLCGRTEQNKMVV 405 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + N +IG+ ++V+IT +TL+GE V Sbjct: 406 FDKGNRHIGETVRVKITGSTSATLFGEEV 434 >gi|184201228|ref|YP_001855435.1| putative tRNA-thiotransferase [Kocuria rhizophila DC2201] gi|229890554|sp|B2GKH0|MIAB_KOCRD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|183581458|dbj|BAG29929.1| putative tRNA-thiotransferase [Kocuria rhizophila DC2201] Length = 513 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 168/446 (37%), Positives = 254/446 (56%), Gaps = 35/446 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFLG 85 + V++ GCQMN +DS R+ + + GY V ++ + DL+V NTC +RE A K+Y LG Sbjct: 29 YEVRTLGCQMNAHDSERITGLLENAGY--VPAVGREPDLVVFNTCAVRENADNKLYGQLG 86 Query: 86 RIRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 ++ +K N R++ + V GC+AQ + I+ ++P V+VV G LP LLERA Sbjct: 87 QLAPVKRRNDRLQ------IAVGGCLAQKDRSTIVEKAPWVDVVFGTHNIGSLPVLLERA 140 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R ++ V+ S+E L R++ +++I GC+ CTFC+VP RG E Sbjct: 141 RHNQQAQVEILESLETFPSALPT-----KREQAYAGWVSISVGCNNTCTFCIVPQLRGKE 195 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R ++ E R L+D+G E+TLLGQNVN++ G++ G++ F+ LL + EI+GL Sbjct: 196 KDRRPGDILAEVRALVDSGAVEVTLLGQNVNSY---GVEFGDRGAFAKLLRACGEIEGLE 252 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I A + +MP LH+P+QSGSDRILK M R + + + I+DR Sbjct: 253 RIRFTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDRILKRMRRSYRSTRFLGILDR 312 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R PD AI++D IVGFPGET+ DF+ T+D+V ++ AF+F+YS R GTP M +Q Sbjct: 313 VRDRIPDAAITTDIIVGFPGETEQDFQDTLDVVAASEFSSAFTFQYSIRPGTPAGEMADQ 372 Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPW 434 V V + ERL LQ + + N VG EVL+ K +L GRS Sbjct: 373 VPAAVVQERFERLTALQDGISAR---LNRQLVGTRAEVLVSAQSGRKSESTHRLSGRSRD 429 Query: 435 LQSVVLNSKNHNI----GDIIKVRIT 456 + V + + GD++ V +T Sbjct: 430 QRLVHFTVPDGAVAPRPGDVVSVPVT 455 >gi|322689418|ref|YP_004209152.1| hypothetical protein BLIF_1234 [Bifidobacterium longum subsp. infantis 157F] gi|320460754|dbj|BAJ71374.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 480 Score = 279 bits (713), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 160/408 (39%), Positives = 250/408 (61%), Gaps = 26/408 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81 F + + GCQMNV+DS R+ + + GY +++N +D DL+VLNTC +RE AAE++Y Sbjct: 27 FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQIND-NDLDLLVLNTCAVRENAAERMY 85 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 +GR +K R +L + V GC+AQ + ++I +P V+ V G + LP+LL+ Sbjct: 86 GTIGRFNRVKLVR----PNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLD 141 Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + R GK V + +L R +++++ I GC+ CTFC+VP TRG Sbjct: 142 QNRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRG 196 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E R ++DE R+ + +G E+TLLGQNVN++ G G+ G++ FS LL + I GL Sbjct: 197 KEKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGL 254 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + ++ I+ Sbjct: 255 ERVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILG 314 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR PD IS+D IVGFPGET++DF+ TMD+V + ++ AF+F YSPR GTP + M E Sbjct: 315 RIREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-E 373 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424 Q+ +V + +RL+ LQ+++ E+ ++ + G+ +EV+I K GK+ Sbjct: 374 QIPRDVVQDRFDRLVALQEQITEENLATFE---GRDVEVMITGKLGKK 418 >gi|238762863|ref|ZP_04623831.1| hypothetical protein ykris0001_31730 [Yersinia kristensenii ATCC 33638] gi|238698874|gb|EEP91623.1| hypothetical protein ykris0001_31730 [Yersinia kristensenii ATCC 33638] Length = 361 Score = 279 bits (713), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 147/321 (45%), Positives = 202/321 (62%), Gaps = 6/321 (1%) Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 VVD + +KF+RL R G TAF++I EGC+K+CTFCVVPYTRG E+SR Sbjct: 12 VVDISFPEIEKFDRLP-----EPRADGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSD 66 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++ E +L GV E+ LLGQNVNA+RG DGE C+F++LL ++ I G+ R+R+TTS Sbjct: 67 DILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGEICSFAELLRLVAAIDGIDRVRFTTS 126 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 HP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++R RPD Sbjct: 127 HPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKLRQARPD 186 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I ISSDFI+GFPGET DF TM LV I + ++SF YS R GTP +++ + V E K Sbjct: 187 IQISSDFIIGFPGETQQDFEQTMKLVADIRFDTSYSFIYSSRPGTPAADLPDNVSEEEKK 246 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNI 447 +RL LQ+++ +Q + + VG + +L+E ++ +L GR+ + V I Sbjct: 247 QRLHILQERITQQAMEISREMVGTVQRILVEGTSRKNLMELAGRTENNRVVNFEGTPDMI 306 Query: 448 GDIIKVRITDVKISTLYGELV 468 G + V I DV S+L G LV Sbjct: 307 GKFVDVEIVDVYASSLRGILV 327 >gi|238019356|ref|ZP_04599782.1| hypothetical protein VEIDISOL_01220 [Veillonella dispar ATCC 17748] gi|237864055|gb|EEP65345.1| hypothetical protein VEIDISOL_01220 [Veillonella dispar ATCC 17748] Length = 426 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 161/438 (36%), Positives = 248/438 (56%), Gaps = 21/438 (4%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN DS R+ S GY ++ ADLI+LNTC +RE A KVY +G + LK Sbjct: 1 MNTADSERLSHQLESVGYTPTEDVEIADLILLNTCAVRENAETKVYGRIGELMRLK---- 56 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---VVDT 152 ++ +L++ V GC+AQ E+ +R+P +++V+G + E++E + G VD Sbjct: 57 RKNKNLILAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQRGHTHQINVDM 116 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 D SV + E + +G + A++ I GC+KFCT+C+VP+ RG EISR + +V Sbjct: 117 DNSVLPELE--AKPNGTF------YAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIVK 168 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSHPR 271 E +L G EITLLGQNVN++ GLD + T F L+ +L I G+ R+RY TSHP+ Sbjct: 169 EVTELGAKGFKEITLLGQNVNSY---GLDFKDGTDFGTLVDALDGIPGIERIRYMTSHPQ 225 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 DM+ +I A G ++ +LHLP+QSGS+RILK MNR +T Y++++ R D+ + Sbjct: 226 DMTKSMIDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKDVVV 285 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391 ++D I GFPGET++DF AT+ L+ + Y A++F YS R GTP + M +QV E VK RL Sbjct: 286 TTDIIAGFPGETEEDFLATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQVPEEVKRVRL 345 Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKNH-NIGD 449 L E N GQ+ ++++E +++ GR+ + V+ + +IG+ Sbjct: 346 QTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVLFPKDDSLSIGE 405 Query: 450 IIKVRITDVKISTLYGEL 467 + I + YG + Sbjct: 406 TVPAYIDKAQTWVCYGTI 423 >gi|313887037|ref|ZP_07820737.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Porphyromonas asaccharolytica PR426713P-I] gi|312923563|gb|EFR34372.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Porphyromonas asaccharolytica PR426713P-I] Length = 450 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 160/451 (35%), Positives = 261/451 (57%), Gaps = 19/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R F+++YGCQMNV DS + GY+ + +D+AD +++NTC +R+ A +++ + Sbjct: 10 KRVFIETYGCQMNVADSEIIAAQMQLAGYQLTDQIDEADAVLINTCSVRDNAEQRI---I 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R+ NL R + G +V V GC+A+ E +++ V++V GP Y LP L+ A Sbjct: 67 HRLDNLNGQRRRSGHPQIVGVLGCMAERVRETLIQDHG-VDLVAGPDAYTDLPHLIAAAE 125 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ + + S + + + V R G ++ F++I GCD FCT+C+VPYTRG E Sbjct: 126 AGEPAISIELSKSETYSDVIPV-----RLPGLHISGFVSIMRGCDNFCTYCIVPYTRGRE 180 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR +V E +++ G E+TLLGQNVN++ + G TF+DLL ++E +R Sbjct: 181 RSRDPESIVREVQRMAQEGYREVTLLGQNVNSYCWQSETGVSYTFADLLRKVAEAVPTMR 240 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP+DM D ++ + ++H P+QSGS+RIL+ M+RR+T Y + ++RI Sbjct: 241 IRFTSPHPKDMKDETLEVMSLYPNICRHIHFPLQSGSNRILERMHRRYTREWYLERVERI 300 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381 R PD +S+D GF GET++DF+ T++++ + AF FKYS R GT S ++++ Sbjct: 301 RDYMPDCGLSTDVFCGFSGETEEDFQETLEVMRQARLDSAFMFKYSERPGTYASRHLVDD 360 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK ERL + LQ +L + N+ VG+ EVLIE + K + GR+ + Sbjct: 361 VPEEVKVERLNRMIALQNEL---SLESNERDVGKSFEVLIEGYSKRSRDDFFGRTQQNKV 417 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V ++ IG ++ VR+ V +T+ G V Sbjct: 418 IVFPKGHNQIGKLVTVRVERVTSATMIGSEV 448 >gi|15827471|ref|NP_301734.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium leprae TN] gi|221229948|ref|YP_002503364.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium leprae Br4923] gi|13432283|sp|Q49842|MIAB_MYCLE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|13093021|emb|CAC31370.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933055|emb|CAR71084.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 517 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 163/474 (34%), Positives = 260/474 (54%), Gaps = 60/474 (12%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MDDADLIVLNTCHIREKAAEKVYSF 83 + V++YGCQMNV+DS R+ + + GY+R + DAD++V NTC +RE A ++Y Sbjct: 20 YQVRTYGCQMNVHDSERLAGLLEAAGYQRAADEADVGDADVVVFNTCAVRENADNRLYGN 79 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L + R + D+ + V GC+AQ + +L ++P V++V G LP LL+RA Sbjct: 80 LSHL----APRKRNNPDMQIAVGGCLAQKDKHTVLSKAPWVDIVFGTHNLGSLPTLLDRA 135 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDG--------GYNRKRGVTAFLTIQEGCDKFCTFCVV 195 R +K ++ IV+ R+ A+++I GC+ CTFC+V Sbjct: 136 R------------HNKVAQVEIVEALQHFPSSLPSARESDYAAWVSISVGCNNSCTFCIV 183 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLL 251 P RG E+ RS + ++ E L+ +GV E+TLLGQNVNA+ L + +F++LL Sbjct: 184 PSLRGKEVDRSPADILAEVEALVADGVLEVTLLGQNVNAYGVSFADPALARNRGSFAELL 243 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 S I GL R+R+T+ HP + + +I+A + P LH+P+QSGSDR+L++M R + Sbjct: 244 RSCGSIDGLERVRFTSPHPAEFTYDVIEAMAQTPNVCPSLHMPLQSGSDRVLRAMRRSYR 303 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 Y II ++R+ P AI++D IVGFPGET++DF AT+D+V ++ + AF+F+YS R Sbjct: 304 VERYLGIIGQVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRQVRFTAAFTFQYSKRP 363 Query: 372 GTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--- 425 GTP + + Q+ + V + ERL+ LQ+++ ++ N +G+I+E+L+ K Sbjct: 364 GTPAAELGGQLPKAVVQERYERLVELQEQICMEE---NRVLIGRIVELLVTTGEGRKDAR 420 Query: 426 ----------GKLVG---RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 G+LV +PW V GDII V +T+ L + Sbjct: 421 TARRTGRARDGRLVHFALDTPWEAQV-------RPGDIITVMVTEAAPHHLIAD 467 >gi|323140809|ref|ZP_08075724.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Phascolarctobacterium sp. YIT 12067] gi|322414691|gb|EFY05495.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Phascolarctobacterium sp. YIT 12067] Length = 442 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 162/443 (36%), Positives = 251/443 (56%), Gaps = 18/443 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMN D+ GY AD+I++NTC +RE A +K+ +G ++ + Sbjct: 12 NYGCQMNESDTEHYAGQLQELGYAPNPDFHTADIIIVNTCCVRESAEKKIAGKIGELKAV 71 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP---QTYYRLPELLERARFGK 147 K + D+++ VAGC+AQ +GE++ ++ P V++++G + RL LLE K Sbjct: 72 KRA----NPDVVICVAGCMAQKDGEKLRKKHPQVDLLLGTAYVNDFKRL--LLEFLAERK 125 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 V TD ++ S +G R+ A++ I GC+ FCT+C+VPY RG E SRS+ Sbjct: 126 AAVYTDLTIHQ-----SEFEGHMVRQSSFAAWIPIMYGCNNFCTYCIVPYVRGRERSRSI 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +V E + +G E TLLGQNVN++ GK G+K F+ LL + I G+ R+ Y T Sbjct: 181 DNIVAEIEAAVKDGYKEFTLLGQNVNSY-GKDF-GDKDAFAKLLRRVDIIPGVERIHYMT 238 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 SHPRDMS+ +IKA + + + H+P Q+GS IL+ MNR +T +Y +++ +R P Sbjct: 239 SHPRDMSEEVIKAVAECEHICENFHMPFQAGSSEILRRMNRGYTKEKYLELVKLVRKYVP 298 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D I++D IVGFPGET+++F T+D+V ++G+ A++F YS R GTP + M QV VK Sbjct: 299 DATITTDIIVGFPGETEENFEETLDVVRQVGFTSAYTFIYSKRSGTPAAKMENQVPLAVK 358 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV--LNSKNH 445 ERL L E + ++ VGQ +EVL E K+K GR+ V+ + K + Sbjct: 359 KERLNRLMALQNENSLKCHEKLVGQTVEVLAEGPSKQKTVWNGRTRTGVLVLWPIEDKQY 418 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 +G + V+I + + G+ V Sbjct: 419 EVGQKVNVQIEAAQTWLVKGKAV 441 >gi|229891230|sp|A6QCD0|MIAB_SULNB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 431 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 166/446 (37%), Positives = 247/446 (55%), Gaps = 18/446 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS M ++ + YE ++++ADLI++NTC +REK K++S Sbjct: 2 KKLFIETLGCAMNVRDSEHMIAELNQKEPYELTQNVEEADLIIINTCSVREKPVAKLFSE 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G K K G VAGC A G++I++R+P V+ V+G + ++ E++++ Sbjct: 62 IGVFNKYKKPGAKIG------VAGCTASHLGKDIIKRAPSVDFVIGARNVSKITEVVDKK 115 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + +DTDY S G R A + I GCDK CTFC+VP TRG EI Sbjct: 116 HAVE--IDTDYDE-------STYAFGEYRTNPFKAMVNISIGCDKSCTFCIVPATRGDEI 166 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S +V E K + G E+ LLGQNVN + R G EK F+ LL +S+I+GL R Sbjct: 167 SIPSDLLVQEITKAVATGAKEVMLLGQNVNNYGRRFGATEEKIDFTGLLQKISKIEGLER 226 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP M D I+ + +H+P+QSGS +LK M R +T + ++I Sbjct: 227 IRFTSPHPLHMDDAFIQEFASNPKICKQIHVPLQSGSTSLLKVMKRGYTKENFLGRCEKI 286 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + P+ IS+D IVGFPGET+ DF TMD+++K+ + Q FSFKYSPR T + EQ+ Sbjct: 287 RMLCPEATISTDIIVGFPGETEADFEDTMDVLEKVRFEQLFSFKYSPRPHTEAAEFEEQI 346 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 D + ERL LQ + E DA +G++ EV ++ K G++ GRS + V + Sbjct: 347 DNKIAGERLTRLQTRHTEILDEIMDAQLGKVHEVYFDEL-KSNGRVSGRSDDGKLVFVEG 405 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 +G I+ VRI L G LV Sbjct: 406 SEELLGKIVDVRIIKTSRGALDGVLV 431 >gi|467090|gb|AAA17273.1| B2235_C2_195 [Mycobacterium leprae] Length = 516 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 163/474 (34%), Positives = 260/474 (54%), Gaps = 60/474 (12%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MDDADLIVLNTCHIREKAAEKVYSF 83 + V++YGCQMNV+DS R+ + + GY+R + DAD++V NTC +RE A ++Y Sbjct: 19 YQVRTYGCQMNVHDSERLAGLLEAAGYQRAADEADVGDADVVVFNTCAVRENADNRLYGN 78 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L + R + D+ + V GC+AQ + +L ++P V++V G LP LL+RA Sbjct: 79 LSHL----APRKRNNPDMQIAVGGCLAQKDKHTVLSKAPWVDIVFGTHNLGSLPTLLDRA 134 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDG--------GYNRKRGVTAFLTIQEGCDKFCTFCVV 195 R +K ++ IV+ R+ A+++I GC+ CTFC+V Sbjct: 135 R------------HNKVAQVEIVEALQHFPSSLPSARESDYAAWVSISVGCNNSCTFCIV 182 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLL 251 P RG E+ RS + ++ E L+ +GV E+TLLGQNVNA+ L + +F++LL Sbjct: 183 PSLRGKEVDRSPADILAEVEALVADGVLEVTLLGQNVNAYGVSFADPALARNRGSFAELL 242 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 S I GL R+R+T+ HP + + +I+A + P LH+P+QSGSDR+L++M R + Sbjct: 243 RSCGSIDGLERVRFTSPHPAEFTYDVIEAMAQTPNVCPSLHMPLQSGSDRVLRAMRRSYR 302 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 Y II ++R+ P AI++D IVGFPGET++DF AT+D+V ++ + AF+F+YS R Sbjct: 303 VERYLGIIGQVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRQVRFTAAFTFQYSKRP 362 Query: 372 GTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--- 425 GTP + + Q+ + V + ERL+ LQ+++ ++ N +G+I+E+L+ K Sbjct: 363 GTPAAELGGQLPKAVVQERYERLVELQEQICMEE---NRVLIGRIVELLVTTGEGRKDAR 419 Query: 426 ----------GKLVG---RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 G+LV +PW V GDII V +T+ L + Sbjct: 420 TARRTGRARDGRLVHFALDTPWEAQV-------RPGDIITVMVTEAAPHHLIAD 466 >gi|269219570|ref|ZP_06163424.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral taxon 848 str. F0332] gi|269210812|gb|EEZ77152.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces sp. oral taxon 848 str. F0332] Length = 496 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 160/418 (38%), Positives = 250/418 (59%), Gaps = 36/418 (8%) Query: 36 MNVYDSLRMEDMFFSQGY-------ERVNSMDDA-----DLIVLNTCHIREKAAEKVYSF 83 MNV+DS R+ + + GY E+ DA D++V+NTC +RE AA +++ Sbjct: 1 MNVHDSERLAGLLENAGYVPVAVVPEKAARATDAGDEGADVVVVNTCSVRENAATRLFGN 60 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG++ +K R + + V GC+AQ I+ ++P V+ V+G LP LLERA Sbjct: 61 LGQLAAVKRERP----GMQIAVGGCLAQQMRGGIIEKAPWVDAVLGTHNLDVLPALLERA 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R + + +VE + E L + +R A+++I GC+ CTFC+VP+ RG Sbjct: 117 RH-----NAEAAVEIE-ESLKVFPSTLPTRRESAFAAWVSISVGCNNTCTFCIVPHLRGK 170 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E R +V+ E ++ G E+TLLGQNVN++ G G G++ F+ LL + EI+GL Sbjct: 171 ERDRRPGEVLAEVEAVVSEGAIEVTLLGQNVNSY-GVGF-GDRQAFAKLLRACGEIEGLE 228 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP SD +I A + +MP LH+P+QSGSDR+L++M R + + + I+DR Sbjct: 229 RVRFTSPHPAAFSDEVIAAMAETPSVMPSLHMPLQSGSDRVLRAMRRSYRSSRFLGILDR 288 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ P+ AI++D IVGFPGETD+DF AT+D+V++ +A A++F YSPR GTP ++M Q Sbjct: 289 VRARMPEAAITTDVIVGFPGETDEDFEATLDVVERSRFASAYTFIYSPRPGTPAADMDNQ 348 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK---EKGKLVGRS 432 VD V ++ RL+ LQ+++ ++ N A G +EVLI E G+ E ++ GR+ Sbjct: 349 VDPEVVSDRYRRLVALQERISTEE---NKAKEGSAVEVLISEGEGRKDAETERVSGRA 403 >gi|281424718|ref|ZP_06255631.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oris F0302] gi|281401088|gb|EFB31919.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella oris F0302] Length = 444 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 160/453 (35%), Positives = 267/453 (58%), Gaps = 21/453 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GY+ + ++AD I LNTC IRE A K+Y+ L Sbjct: 3 KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSIRENAENKIYNRL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ K+G L++ V GC+A+ +++++ ++V GP +Y LP ++ Sbjct: 63 DTL----HAEQKKGRQLILGVLGCMAERVKDDLIKNHH-ASLVCGPDSYLNLPTMIAECE 117 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G VDT+ S + + + G NR V+ F++I GC+ FC +C+VPYTRG E S Sbjct: 118 LGHATVDTNLSTTETYRNVLPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPYTRGRERS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260 R + ++ E + L D G E+TLLGQNVN++ G +G++ +F++LL +++ Sbjct: 175 RDVESILAEVKDLHDKGFKEVTLLGQNVNSY-GLLPNGKRPENGTSFAELLRKVAQSVPD 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R+R+TTS+P DM++ ++ A + L ++H P QSGS++ILK MNR++T EY + Sbjct: 234 MRVRFTTSNPEDMTEDILHAIAEEPNLCKHIHFPAQSGSNKILKLMNRKYTREEYLDKVA 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379 I+ + P +++D VG+ ET++D + T+ LV ++G+ AF FKYS R GT + L Sbjct: 294 AIKRIIPGCGLTTDIFVGYHDETEEDQQLTLSLVKEVGFDSAFMFKYSERPGTYAAKYLP 353 Query: 380 EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWL 435 + V E VK R L+ LQ + +Q N G +L E+ K++ L+GR+ Sbjct: 354 DNVSEEVKIARLNELIHLQTTISGEQ---NKKDEGSEFVILTERFSKKDRNHLMGRTEQN 410 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++V++ NH+IG+ IKVRIT +TL+GE + Sbjct: 411 KAVIIEKGNHHIGEFIKVRITGSTSATLFGEEI 443 >gi|113952803|ref|YP_729952.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus sp. CC9311] gi|113880154|gb|ABI45112.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp. CC9311] Length = 436 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 176/447 (39%), Positives = 262/447 (58%), Gaps = 25/447 (5%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN DS RM + + GY+ N+ DADL++ NTC IR+ A +KVYS+LGR + R Sbjct: 1 MNKADSERMAGILETMGYQEANAELDADLVLYNTCTIRDNAEQKVYSYLGR----QAIRK 56 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT-DY 154 + +L +VVAGCVAQ EGE +LRR P +++V+GPQ RL LL + + G++VV T D+ Sbjct: 57 RTNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLETLLTQVQAGQQVVATEDH 116 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 + E L+ R A++ + GC++ CT+CVVP RG E SR ++ E Sbjct: 117 HI---LEDLTTA----RRDSSTCAWVNVIYGCNERCTYCVVPSVRGKEQSRLPESILLEM 169 Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGLVRLRYTTS 268 L G EITLLGQN++A+ G+ L G + T +DLL+ + +++G+ RLR+ TS Sbjct: 170 EGLAARGFKEITLLGQNIDAY-GRDLPGITAEGRRQHTLTDLLHQVHDVEGIERLRFATS 228 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 HPR ++ LI A DL + + H+P QSG + +LK+M R +T YR+IIDRIR PD Sbjct: 229 HPRYFTERLIDACADLPKVCEHFHIPFQSGDNELLKAMARGYTVERYRRIIDRIRKRMPD 288 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 AIS+D IV FPGETD +R T+ L+++IG+ Q + YSPR TP ++ Q+ E VK Sbjct: 289 AAISADVIVAFPGETDAQYRRTLALIEEIGFDQVNTAAYSPRPNTPAADWNNQLSEEVKV 348 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKN--- 444 RL + + N G+I +VL E + K+ +L+GR+ + ++++ Sbjct: 349 ARLQEINALVESTAKERNARYAGRIEQVLAEGMNPKDPSQLMGRTRTNRLTFFSAESPQG 408 Query: 445 --HNIGDIIKVRITDVKISTLYGELVV 469 H GD++ VRI V+ +L G V+ Sbjct: 409 ITHRAGDLVDVRIDQVRSFSLTGTPVI 435 >gi|159037038|ref|YP_001536291.1| RNA modification protein [Salinispora arenicola CNS-205] gi|229890640|sp|A8M7W6|MIAB_SALAI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|157915873|gb|ABV97300.1| RNA modification enzyme, MiaB family [Salinispora arenicola CNS-205] Length = 502 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 162/417 (38%), Positives = 243/417 (58%), Gaps = 21/417 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV-LNTCHIREKAAEKVYS 82 P+ + V++YGCQMNV+DS R+ + GY R DD +V NTC +RE A ++Y Sbjct: 11 PRTYQVRTYGCQMNVHDSERIAGLLEQAGYLRAGDADDVPDVVVFNTCAVRENADNRLYG 70 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LG++R K+ + + V GC+AQ + EI+RR+P V+VV G LP LLER Sbjct: 71 NLGQLRPSKDRHPG----MQIAVGGCLAQKDRSEIVRRAPWVDVVFGTHNIGSLPVLLER 126 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRG 200 AR + VE E L + +R T +++I GC+ CTFC+VP RG Sbjct: 127 ARH-----NAAAEVE-ILESLDVFPSTLPTRRESTYAGWVSISVGCNNTCTFCIVPALRG 180 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259 E R V+ E R L+D GV E+TLLGQNVN++ G++ G++ F LL + +I G Sbjct: 181 KERDRRPGDVLSEVRALVDEGVLEVTLLGQNVNSY---GIEFGDRYAFGKLLRACGDIDG 237 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+T+ HP+D +D +I A + + LH+P+QSGSD +L++M R + + Y II Sbjct: 238 LERVRFTSPHPKDFTDDVIAAMAETPNVCHSLHMPLQSGSDDVLRAMRRSYRSERYLGII 297 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +++R+ PD AI++D IVGFPGET+ DF T+D+V ++ AF+F+YS R GTP + M Sbjct: 298 EKVRAAMPDAAITTDIIVGFPGETEADFERTLDVVRSARFSSAFTFQYSKRPGTPAATMA 357 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432 +Q+ + V ER L + E + N VG+ +EVL+ + + G+L GR+ Sbjct: 358 DQLPKPVVQERYERLVACVEEITWAENRRLVGETVEVLVAVGEGRKDERTGRLSGRA 414 >gi|154504378|ref|ZP_02041116.1| hypothetical protein RUMGNA_01882 [Ruminococcus gnavus ATCC 29149] gi|153795307|gb|EDN77727.1| hypothetical protein RUMGNA_01882 [Ruminococcus gnavus ATCC 29149] Length = 494 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 166/453 (36%), Positives = 253/453 (55%), Gaps = 23/453 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P F V ++GCQMN DS ++ + GY + AD ++ NTC +RE A +KVY Sbjct: 52 PLTFHVTTFGCQMNARDSEKLTGILEQIGYVEEEEENQADFVIYNTCTVRENANQKVYGH 111 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLE 141 LG++ +K K+ +L+ + GC+ Q E E L++S V+++ G ++ EL+ Sbjct: 112 LGQLNRVK----KKNPHMLIGLCGCMMQEPEVVEKLKKSYRFVDLIFGTHNIFKFAELVA 167 Query: 142 RARFGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 R+V DTD VED RK + + I GC+ FC++C+VP Sbjct: 168 TRLESDRMVIDIWKDTDKIVEDL---------PSERKFSFKSGVNIMFGCNNFCSYCIVP 218 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 Y RG E SR+ ++ E L+ +GV E+ LLGQNVN++ GK L+ E TF+ LL + + Sbjct: 219 YVRGRERSRNPKDIIREIESLVADGVVEVMLLGQNVNSY-GKTLE-EPMTFAQLLQEIEK 276 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I+GL R+R+ TSHP+D+SD LI+ + +LHLPVQSGS RIL+ MNRR+T Y Sbjct: 277 IEGLERIRFMTSHPKDLSDELIEVMAQSQKICKHLHLPVQSGSTRILEKMNRRYTKEHYL 336 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++++I++ PDI++++D IVGFPGET++DF+ T+D+V K+ Y AF+F YS R GTP + Sbjct: 337 GLVEKIKAAVPDISLTTDIIVGFPGETEEDFQETLDVVRKVRYDSAFTFIYSKRTGTPAA 396 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWL 435 + EQV E + +R L K+++ + VL+E LV GR Sbjct: 397 VLEEQVPEEIVKDRFDRLLKEVQSISAEVCSVHTKTVQRVLVESVNDHDDSLVTGRMSNN 456 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + +G ++ VR+ K GE+V Sbjct: 457 LLVHFPGEKDLVGKLVDVRLDTCKGFYYLGEMV 489 >gi|72382710|ref|YP_292065.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Prochlorococcus marinus str. NATL2A] gi|123732603|sp|Q46JG6|MIAB_PROMT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|72002560|gb|AAZ58362.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prochlorococcus marinus str. NATL2A] Length = 463 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 164/454 (36%), Positives = 258/454 (56%), Gaps = 23/454 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM + GY ADL++ NTC IR+ A +KVYS+LGR Sbjct: 21 YWITTFGCQMNKADSERMSGILEYMGYYPAEEELKADLVLYNTCTIRDSAEQKVYSYLGR 80 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + +L +VVAGC+AQ EGE +LRR P +++++GPQ RL LL + G Sbjct: 81 ----QAIRKRSLPNLKIVVAGCLAQQEGESLLRRVPEIDLLMGPQHCNRLESLLNQVDSG 136 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++V+ T E++F I R + ++ I GC++ CT+CVVP RG E SR+ Sbjct: 137 QQVLAT----EEQFILEDITTP--RRDSSICGWVNIIYGCNERCTYCVVPSVRGKEQSRT 190 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL------DGEKCTFSDLLYSLSEIKGL 260 + E L +G EITLLGQN++A+ G+ D + T S LL + +I+G+ Sbjct: 191 PEAIKSEVEDLAKSGYKEITLLGQNIDAY-GRDFQSQNKEDSAQVTLSYLLKYIHDIEGI 249 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHPR + LI +L + + H+P QSGS++ILK+M R +T Y+ II+ Sbjct: 250 ERIRFATSHPRYFTKELIDTCSELPKVCEHFHIPFQSGSNKILKNMGRGYTIESYKNIIN 309 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 I++ P AIS D IV FPGE++ D+ T+ L+D+I + + YSPR TP + Sbjct: 310 YIKAKIPKAAISGDAIVAFPGESETDYEQTLSLIDEIKFDHVNTAAYSPRPNTPAATWPR 369 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS-----PW 434 Q++E++K +RL + + N E+LIE + K+ +L+GR+ + Sbjct: 370 QLNEDIKVKRLREINSLVENIAKERNQRYKNTSQEILIENINPKDSFQLMGRTRTNRLTF 429 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + N + +G++IKV+ITDV+ +L +L+ Sbjct: 430 FPRSLKNGVENKLGELIKVKITDVRPFSLTAKLL 463 >gi|320457927|dbj|BAJ68548.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 480 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 160/408 (39%), Positives = 249/408 (61%), Gaps = 26/408 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81 F + + GCQMNV+DS R+ + + GY +++N +D DL+VLNTC +RE AAE++Y Sbjct: 27 FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQIND-NDLDLLVLNTCAVRENAAERMY 85 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 +GR +K R +L + V GC+AQ + ++I +P V+ V G + LP+LL+ Sbjct: 86 GTIGRFNRVKLVR----PNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLD 141 Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + R GK V + +L R +++++ I GC+ CTFC+VP TRG Sbjct: 142 QNRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRG 196 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E R ++DE R+ + G E+TLLGQNVN++ G G+ G++ FS LL + I GL Sbjct: 197 KEKDRRPGDILDEIRQCVAGGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGL 254 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + ++ I+ Sbjct: 255 ERVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILG 314 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR PD IS+D IVGFPGET++DF+ TMD+V + ++ AF+F YSPR GTP + M E Sbjct: 315 RIREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-E 373 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424 Q+ +V + +RL+ LQ+++ E+ ++ + G+ +EV+I K GK+ Sbjct: 374 QIPRDVVQDRFDRLVALQEQITEENLATFE---GRDVEVMITGKLGKK 418 >gi|213691832|ref|YP_002322418.1| RNA modification enzyme, MiaB family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|229890433|sp|B7GQG0|MIAB_BIFLI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|213523293|gb|ACJ52040.1| RNA modification enzyme, MiaB family [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 484 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 160/408 (39%), Positives = 249/408 (61%), Gaps = 26/408 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVY 81 F + + GCQMNV+DS R+ + + GY +++N +D DL+VLNTC +RE AAE++Y Sbjct: 31 FHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQIND-NDLDLLVLNTCAVRENAAERMY 89 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 +GR +K R +L + V GC+AQ + ++I +P V+ V G + LP+LL+ Sbjct: 90 GTIGRFNRVKLVR----PNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLD 145 Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + R GK V + +L R +++++ I GC+ CTFC+VP TRG Sbjct: 146 QNRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRG 200 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E R ++DE R+ + G E+TLLGQNVN++ G G+ G++ FS LL + I GL Sbjct: 201 KEKDRRPGDILDEIRQCVAGGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGL 258 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + ++ I+ Sbjct: 259 ERVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILG 318 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR PD IS+D IVGFPGET++DF+ TMD+V + ++ AF+F YSPR GTP + M E Sbjct: 319 RIREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-E 377 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424 Q+ +V + +RL+ LQ+++ E+ ++ + G+ +EV+I K GK+ Sbjct: 378 QIPRDVVQDRFDRLVALQEQITEENLATFE---GRDVEVMITGKLGKK 422 >gi|182412618|ref|YP_001817684.1| RNA modification protein [Opitutus terrae PB90-1] gi|177839832|gb|ACB74084.1| RNA modification enzyme, MiaB family [Opitutus terrae PB90-1] Length = 468 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 165/462 (35%), Positives = 254/462 (54%), Gaps = 32/462 (6%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN DS + M ++GY V +D D+++LNTC +R+ A +K G ++ K Sbjct: 1 MNERDSEAVAAMLRARGYRIVADENDCDILLLNTCSVRDAAEQKAIGKAGYLQQRK---- 56 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--------FGK 147 K+ D ++ + GC+AQ G +L + P V+++VG Q ++++P L+ R G+ Sbjct: 57 KKQPDFVLGILGCMAQNRGASLLDQLPDVDLIVGTQKFHQVPGYLDNLRAARDAGVPIGE 116 Query: 148 RVVD-----------------TDYSVEDKFERL-SIVDGGYNRKRGVTAFLTIQEGCDKF 189 +VD D + + L S + G +TAF++IQ+GC+ Sbjct: 117 TIVDIGEEAGSQNTIKDHLLPQDSDSDSQPSTLNSQLRGAAAPPPQITAFVSIQQGCNMD 176 Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTF 247 C FC+VP TRG E SR + +V E +L GV E+TLLGQ V ++ R F Sbjct: 177 CAFCIVPKTRGDERSRPMDDIVRECEQLAARGVREVTLLGQIVTSYGRRDYTHTNGISPF 236 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 LL + + G+ R+R+T+ HPR D L+ A+G L L Y+HLP+QSGS+RIL++MN Sbjct: 237 VQLLERVHALDGIERIRFTSPHPRGFKDDLVAAYGRLPKLCGYVHLPLQSGSNRILRAMN 296 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R +T YR+I+D +R+VR D+ S+D IVGFPGETD+DF T +L + Y A+ FKY Sbjct: 297 RPYTRERYREIVDALRAVRSDMYFSTDVIVGFPGETDEDFEQTRELFEACNYDMAYVFKY 356 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 S R GTP + +QV E+VK +R L + LR+ N + + EVL+E K + Sbjct: 357 SVRTGTPAAERGDQVPEDVKEQRNQLLLELLRQNSERRNALLLDTVEEVLVEGPDKTGQR 416 Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 GR+ + + + +G ++ +RIT +STLYGEL++ Sbjct: 417 FTGRTRGNRVCIFEATPDLVGRLVSLRITRASVSTLYGELML 458 >gi|293397289|ref|ZP_06641561.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Serratia odorifera DSM 4582] gi|291420207|gb|EFE93464.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Serratia odorifera DSM 4582] Length = 365 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 140/318 (44%), Positives = 205/318 (64%), Gaps = 6/318 (1%) Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 +VD + +KF+RL R G TA+++I EGC+K+CTFCVVPYTRG E+SR Sbjct: 12 IVDISFPEIEKFDRLP-----EPRAEGPTAYVSIMEGCNKYCTFCVVPYTRGEEVSRPSD 66 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V+ E +L GV E+ LLGQNVNA+RG DG C+F++LL ++ I G+ R+R+TTS Sbjct: 67 DVLFEIAQLAAQGVREVNLLGQNVNAYRGATYDGGVCSFAELLRLVAAIDGIDRIRFTTS 126 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 HP + +D +I + D L+ +LHLPVQSGSDRIL M R HTA EY+ II ++R RP+ Sbjct: 127 HPIEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKLRKARPN 186 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I ISSDFI+GFPGE+ DF TM+L+ ++ + +FSF YS R GTP ++M++ V E+ K Sbjct: 187 IQISSDFIIGFPGESQADFEQTMNLIAEVNFDTSFSFIYSSRPGTPAADMVDDVSEDEKK 246 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNI 447 +RL LQ+++ +Q + F+ +G + +L+E ++ +L GR+ + V I Sbjct: 247 QRLYILQERILQQAMRFSRQMLGTVQRILVEGTSRKSVMELAGRTECNRMVNFEGTPDMI 306 Query: 448 GDIIKVRITDVKISTLYG 465 G + V IT+V ++L G Sbjct: 307 GQFVDVEITEVLTNSLRG 324 >gi|296454331|ref|YP_003661474.1| MiaB family RNA modification protein [Bifidobacterium longum subsp. longum JDM301] gi|296183762|gb|ADH00644.1| RNA modification enzyme, MiaB family [Bifidobacterium longum subsp. longum JDM301] Length = 479 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 160/407 (39%), Positives = 248/407 (60%), Gaps = 24/407 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY----ERVNSMDDADLIVLNTCHIREKAAEKVYS 82 F + + GCQMNV+DS R+ + + GY E + +D DL+VLNTC +RE AAE++Y Sbjct: 26 FHIHTLGCQMNVHDSERIAGVLEANGYVPATEGQINDNDLDLLVLNTCAVRENAAERMYG 85 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +GR +K R +L + V GC+AQ + ++I +P V+ V G + LP+LL++ Sbjct: 86 TIGRFNRVKLVR----PNLQIAVGGCMAQLDRKKIADTAPWVSAVFGTKNIEDLPKLLDQ 141 Query: 143 ARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R GK V + +L R +++++ I GC+ CTFC+VP TRG Sbjct: 142 NRATGKAQVQVTEQLRQFPSQLPAA-----RASRISSWVAISVGCNNTCTFCIVPTTRGK 196 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E R ++DE R+ + +G E+TLLGQNVN++ G G+ G++ FS LL + I GL Sbjct: 197 EKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSF-GYGI-GDRYAFSKLLRACGTIDGLE 254 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + ++ I+ R Sbjct: 255 RVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 314 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR PD IS+D IVGFPGET++DF+ TMD+V + ++ AF+F YSPR GTP + M EQ Sbjct: 315 IREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAM-EQ 373 Query: 382 VDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424 + +V + +RL+ LQ+++ E+ ++ + G+ +EV+I K GK+ Sbjct: 374 IPRDVVQDRFDRLVALQEQITEENLATFE---GRDVEVMITGKLGKK 417 >gi|290968596|ref|ZP_06560134.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera genomosp. type_1 str. 28L] gi|290781249|gb|EFD93839.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera genomosp. type_1 str. 28L] Length = 442 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 159/444 (35%), Positives = 249/444 (56%), Gaps = 15/444 (3%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 ++ +YGCQMN DS R + GY MD AD+I+LNTC +RE A K LG+I Sbjct: 10 YIATYGCQMNSSDSERYAGQLEALGYRLTEEMDVADVILLNTCCVRETAEGKT---LGKI 66 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 LK+ + + +L++ V GC+AQ E + R+P +++V+G ++L LL+ R GK Sbjct: 67 GELKHYK-ERNPELVIAVTGCMAQEWQERLFERAPHIDLVIGTHNIHKLTALLQE-RQGK 124 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + +++ + D R A++ I GC+KFCT+C+VP+ RG E+SR + Sbjct: 125 ----SGHALAADMSLPAFHDLPTKRFHKFFAWVPIMNGCNKFCTYCIVPHVRGREVSRPV 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYT 266 +++V E +L +G E+TLLGQNVN++ GLD T F L+ +L + G+ R+RY Sbjct: 181 AEIVREVAQLGKDGYKEVTLLGQNVNSY---GLDLRDGTDFGTLVEALETVPGVERIRYM 237 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHP+DM+ +I A ++ +LHLP+QSGS+ +LK MNR +T Y +I R Sbjct: 238 TSHPKDMTPAMIDAIAAGSRVVHHLHLPIQSGSNAMLKRMNRGYTVEHYLDLIAYARKKM 297 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 D+ +++D IVGFPGET+ F+ T+ L+ ++GY A++F YSPR GTP + +QV Sbjct: 298 SDLVLTTDLIVGFPGETEAMFQETLQLIRQVGYDMAYTFIYSPRTGTPAATWPDQVAAAE 357 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNH 445 K+ RL CL E ++ N G+ EV++E K + GR+ + ++ Sbjct: 358 KSRRLQCLMDIQNETSLALNREMEGRSYEVIVEGPTKNDARHWFGRTRGNKMIIWEEDGS 417 Query: 446 -NIGDIIKVRITDVKISTLYGELV 468 IGD V + + L G ++ Sbjct: 418 VQIGDTADVMVDKGQTWVLKGHVI 441 >gi|88801432|ref|ZP_01116960.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polaribacter irgensii 23-P] gi|88782090|gb|EAR13267.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polaribacter irgensii 23-P] Length = 484 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 171/461 (37%), Positives = 258/461 (55%), Gaps = 26/461 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGCQMN+ DS + + +GY +++ADL+++NTC IREKA V L Sbjct: 27 KKLFIESYGCQMNMNDSEIVAAILDKEGYNTTQILEEADLVLVNTCSIREKAETSVRKRL 86 Query: 85 GRIRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + +K N ++K G V GC+A+ E+ L IV++VVGP Y LP LL Sbjct: 87 QKYNAVKKINPKMKVG------VLGCMAERLKEKFLEEEKIVDLVVGPDAYKDLPNLLSE 140 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ V+ S ++ + +S V N GVTAF++I GCD CTFCVVP+TRG E Sbjct: 141 VSEGRSAVNVILSKDETYGDISPVRLNTN---GVTAFVSITRGCDNMCTFCVVPFTRGRE 197 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSD 249 SR +++E + ++D EITLLGQNV++ W G GL D +K T F++ Sbjct: 198 RSRDPKSILEEIQSMVDQNFKEITLLGQNVDSFLWFGGGLKKDFKKATEMARATAIGFAE 257 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL + R R++TS+P+DMS +I + YLHLPVQSGS+ +LK+MNR+ Sbjct: 258 LLDMCATKFPKTRFRFSTSNPQDMSLDVIHVMAKHINICKYLHLPVQSGSNAMLKAMNRQ 317 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 HT EY ++D I + P++++S D IVGF GET++D + T+ L+ + Y F F YS Sbjct: 318 HTREEYMTLVDNIFKIIPEMSLSQDMIVGFCGETEEDHQDTLALMQYVKYDFGFMFTYSE 377 Query: 370 RLGT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GK 427 R GT G+ M + V + VK RL + +E + +G+I E LIE K+ + Sbjct: 378 RPGTLAGNKMDDDVPQPVKKRRLQEIIDLQQEHALFRTQQHLGKIEEFLIEGTSKKNPDE 437 Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 R+ V +++ +GD + V++ D +TL G +V Sbjct: 438 WKARNTQNTIAVFKKEHYKLGDFVNVKVEDCTSATLKGTVV 478 >gi|228471151|ref|ZP_04055970.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Porphyromonas uenonis 60-3] gi|228307091|gb|EEK16165.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Porphyromonas uenonis 60-3] Length = 452 Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 161/450 (35%), Positives = 258/450 (57%), Gaps = 17/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R ++++YGCQMNV DS + GY+ + +D+AD +++NTC +R+ A ++ + Sbjct: 10 KRVYIETYGCQMNVADSEIIAAQMQLAGYQLTDQIDEADAVLINTCSVRDNAELRI---V 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R+ NL R + G +V V GC+A+ +E L ++ V++V GP Y LP L+ A Sbjct: 67 RRLDNLNGQRRRSGHPQIVGVLGCMAE-RVQETLIQNHGVDLVAGPDAYTDLPHLIAAAE 125 Query: 145 FGKRVVDTDYSVEDKF-ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+ + + S + + + + I G + ++ F++I GCD FCT+C+VPYTRG E Sbjct: 126 AGEPAISIELSKSETYSDVIPIRLPGLH----ISGFVSIMRGCDNFCTYCIVPYTRGRER 181 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E +++ G E+TLLGQNVN++ G TF+DLL S++E +R+ Sbjct: 182 SRDPESIIREVQRMAQEGYREVTLLGQNVNSYCWHTETGASYTFADLLRSVAEAVPTMRI 241 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP+DM D ++ + ++H P+QSGS+RIL+ M RR+T Y + ++RIR Sbjct: 242 RFTSPHPKDMKDETLEVMSRYHNICSHIHFPLQSGSNRILERMRRRYTREWYLERVERIR 301 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQV 382 PD +S+D GF GET++DF+ T++++ AF FKYS R GT S+ L + V Sbjct: 302 DYMPDCGLSTDVFCGFSGETEEDFQETLEVMRLARLDSAFMFKYSERPGTYASHHLVDDV 361 Query: 383 DENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 E VK ERL + LQ +L + N+ VG+ EVLIE + K GR+ + + Sbjct: 362 PEEVKVERLNRMIALQNEL---SLESNERDVGKSFEVLIEGYSKRSHDDFFGRTQQNKVI 418 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V N+ IG ++ VR+ V +T+ G V Sbjct: 419 VFPKGNNQIGKLVTVRVERVTSATMIGSEV 448 >gi|307564743|ref|ZP_07627271.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella amnii CRIS 21A-A] gi|307346465|gb|EFN91774.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella amnii CRIS 21A-A] Length = 442 Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 159/453 (35%), Positives = 264/453 (58%), Gaps = 21/453 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GY+ DDAD I +NTC IRE A K+Y+ L Sbjct: 2 KKLYIETYGCQMNVADSEVVASVMKMAGYDVCEKEDDADAIFINTCSIRENAENKIYNRL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + K ++G DL++ V GC+A+ ++++ N+V GP +Y LP+++ + Sbjct: 62 ESLHAEK----RKGRDLILGVLGCMAERVRDDLIDNHH-ANLVCGPDSYLNLPDMIAQCE 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G D + S + + + G N+ V+ F++I GC+ FC +C+VP+TRG E S Sbjct: 117 NGNNACDIELSTTETYRNIIPQRIGGNK---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260 R + ++ E L + G E+TLLGQNVN++ G +G++ +F++LL +++ Sbjct: 174 RDVESILQEVNDLKERGFKEVTLLGQNVNSY-GLLPNGKRPKNGTSFAELLQKVAQSVPN 232 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R+R+TTS+P DM++ ++ D L ++H P QSGS+ +LK MNR++T EY + + Sbjct: 233 MRVRFTTSNPEDMTEDILHVVAQEDNLCNHIHFPAQSGSNTVLKDMNRKYTREEYLEKVA 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379 IRS+ P+ +++D VG+ E+ +D T+DLV ++G+ AF FKYS R GT + L Sbjct: 293 AIRSIIPNCGLTTDIFVGYHNESIEDHHQTLDLVREVGFDSAFMFKYSERPGTYAAKHLP 352 Query: 380 EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWL 435 + V E K R L+ LQ ++ +Q N G+ ++LIE+ GK +L+GR+P Sbjct: 353 DNVSEQEKIRRLNELIHLQTQISAEQ---NKKDEGKEFDILIERFGKRSHDQLMGRNPQN 409 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++VV+ H+IG+ + VRI +TL GE V Sbjct: 410 KAVVIPKGKHHIGETVHVRIISSTSATLIGEEV 442 >gi|257066511|ref|YP_003152767.1| RNA modification enzyme, MiaB family [Anaerococcus prevotii DSM 20548] gi|256798391|gb|ACV29046.1| RNA modification enzyme, MiaB family [Anaerococcus prevotii DSM 20548] Length = 449 Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 166/450 (36%), Positives = 256/450 (56%), Gaps = 21/450 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + + ++GCQMN +DS R+ + GY + AD I+ NTC +RE A K+Y + Sbjct: 14 KTYNITTFGCQMNEHDSERISYILEDLGYTKTEDRSSADFILFNTCLVRENAELKLYGQV 73 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 ++ LK KE + ++ V+GC+ Q E I++ V+++ G + L +L+ R Sbjct: 74 SSLKKLK----KEHPEKIIAVSGCMMQTSTAREVIIKDHKEVDIIFGTKNINSLVDLIFR 129 Query: 143 -ARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 +RV+D TD V+D + YN AF+ I GCD FC++C+VP +R Sbjct: 130 YLETNERVIDISTD-DVKDDY-------VNYNTLNDFQAFVNIMTGCDNFCSYCIVPESR 181 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR S ++ E L++ G EITLLGQNVN++ K TF +LL +S+I+G Sbjct: 182 GREESRRPSAILAEVEHLVEEGYKEITLLGQNVNSYGNKA--DFDMTFPELLEKISQIEG 239 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L RLR+TTSHP+D+SD LI+ + D + Y HLP+QSGS ++LK MNR++ +Y + Sbjct: 240 LKRLRFTTSHPKDLSDELIEVIKNNDNICNYFHLPLQSGSSKVLKDMNRKYDQEKYIERA 299 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R P IAIS+D IVG+P ET++DF+ T+ + +I + AF+FKYSPR T + L Sbjct: 300 KKLREEIPGIAISTDIIVGYPTETEEDFKETLKVCREIEFDSAFTFKYSPRPKTRAAK-L 358 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438 +D+ + +R L + N +G+ +EVL+E K L GR+ + V Sbjct: 359 TPIDDEIVQDRFDRLLDTIYPIFNEKNKEYIGKTVEVLLESESKNNPDILTGRTDTFKLV 418 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG+I+KV+ITD T+ GELV Sbjct: 419 HVKASKKLIGEIVKVKITDNTSFTISGELV 448 >gi|225374900|ref|ZP_03752121.1| hypothetical protein ROSEINA2194_00523 [Roseburia inulinivorans DSM 16841] gi|225213283|gb|EEG95637.1| hypothetical protein ROSEINA2194_00523 [Roseburia inulinivorans DSM 16841] Length = 480 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 168/455 (36%), Positives = 256/455 (56%), Gaps = 26/455 (5%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHI 72 V+++ +Q P F V ++GCQMN DS ++ + GY V + D+ AD ++ NTC + Sbjct: 34 VAELAEQKGAPLTFCVTTFGCQMNARDSEKLVGILEKIGY--VEAPDEKADFVIYNTCTV 91 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGP 130 RE A KVY LG + K K+ +++ + GC+ Q E+I V+++ G Sbjct: 92 RENANNKVYGRLGYLHGFK----KKNPYMMIGLCGCMMQEPTVVEKIQNSYRFVDLIFGT 147 Query: 131 QTYYRLPELLERARFGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185 Y+ EL+ A + DTD VED V+ Y+ K GV I G Sbjct: 148 HNIYKFAELIVTALESDSMTIDIWKDTDKIVED-----LPVERKYSFKSGVN----IMFG 198 Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245 C+ FC++C+VPY RG E SR ++V E L+ +GV E+ LLGQNVN++ G+ L+ Sbjct: 199 CNNFCSYCIVPYVRGRERSREPKEIVREIEHLVQDGVVEVMLLGQNVNSY-GRNLE-HPM 256 Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 TF+ LL + +I+GL R+R+ TSHP+D+SD LI+ + + +LHLP+QSGS RILK Sbjct: 257 TFAQLLQEIEKIEGLERIRFMTSHPKDLSDELIEVMKNSKKICNHLHLPLQSGSSRILKI 316 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 MNR + Y +++D+IR+ PDIA+++D IVGFPGET++DF TMD+V ++ Y AF+F Sbjct: 317 MNRHYDKEHYLELVDKIRAAVPDIALTTDIIVGFPGETEEDFEETMDVVRRVRYDSAFTF 376 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKE 424 YS R GTP + M +Q+ E V ER L +++ GQ + VL+E+ +G++ Sbjct: 377 IYSKRTGTPAATMDDQIPEEVIKERFDRLLHEVQTISAEKAGKLTGQTLPVLVEEVNGQD 436 Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459 + G+ +V IG I V + + K Sbjct: 437 ASLVTGKLTNNSTVHFPGTADMIGTIQNVVLEECK 471 >gi|262184302|ref|ZP_06043723.1| 2-methylthioadenine synthetase [Corynebacterium aurimucosum ATCC 700975] Length = 487 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 149/408 (36%), Positives = 231/408 (56%), Gaps = 22/408 (5%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNV+DS R+ + GY + + DLIV NTC +RE A +++Y LG ++ K + Sbjct: 1 MNVHDSERISGLLEEAGYSAAPNGTEPDLIVFNTCAVRENADKRLYGTLGALKKTKENHP 60 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 + + V GC+AQ + + +L +P V+ V G LP LLERAR + Sbjct: 61 G----MQIAVGGCLAQKDKDTVLDHAPWVDAVFGTHNMAALPALLERARHND---EAQVE 113 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 + D E V R+ ++++ GC+ CTFC+VP RG E R ++ E + Sbjct: 114 IVDALEAFPSVLPA-KRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEEDRRPGDILAEVQ 172 Query: 216 KLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271 L+D GV E+TLLGQNVNA+ L ++ FS LL + +I+GL RLR+T+ HP Sbjct: 173 ALVDQGVSEVTLLGQNVNAYGVNFADPDLPRDRFAFSKLLREVGKIEGLERLRFTSPHPA 232 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 + + +I A + + P LH+P+QSGSD++LK M R + ++ I+D +R P AI Sbjct: 233 EFTSDVIDAMAETPAVCPQLHMPLQSGSDKVLKDMRRSYRTKKFLGILDEVREKMPHAAI 292 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KA 388 ++D IVGFPGET++DF AT+++V + +A AF+F+YSPR GTP + M Q+ + V + Sbjct: 293 TTDIIVGFPGETEEDFEATLEVVRRARFASAFTFQYSPRPGTPAAEMENQIPKEVVQERF 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRS 432 ERL+ LQ ++ ++ N VG +E+L++ G K +L GR+ Sbjct: 353 ERLVALQDSIQAEE---NAKLVGTDVELLVQAEGGRKSAETHRLTGRA 397 >gi|229829135|ref|ZP_04455204.1| hypothetical protein GCWU000342_01220 [Shuttleworthia satelles DSM 14600] gi|229792298|gb|EEP28412.1| hypothetical protein GCWU000342_01220 [Shuttleworthia satelles DSM 14600] Length = 534 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 163/447 (36%), Positives = 254/447 (56%), Gaps = 16/447 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F V ++GCQMN DS ++ + GY S ++AD ++ NTC +RE A KVY LG Sbjct: 97 FCVTTFGCQMNARDSEKLRGILEKIGYVEKES-EEADFVIYNTCTVRENANNKVYGRLGY 155 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + K K +++ + GC+ Q + ++I + V+++ G Y+ EL A Sbjct: 156 LHGFK----KTNPGMMIALCGCMMQEDVVVDKIRQSYRFVDLIFGTHNIYKFAELAYEAL 211 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +++ + D+ V+ Y+ K GV I GCD FCT+C+VPY RG E S Sbjct: 212 QADQMIIDIWKDADRIVENLPVERKYSFKSGVN----IMFGCDNFCTYCIVPYVRGRERS 267 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +++ E +L+D+GV E+ LLGQNVN++ G GL+ + +F+ LL + +I+GL R+R Sbjct: 268 RRPVEIIREIERLVDDGVVEVMLLGQNVNSY-GAGLE-DHMSFAQLLSEIEKIEGLARIR 325 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D+SD LI D + ++HLP+QSGS R+L MNRR+T Y + DRIR Sbjct: 326 FMTSHPKDLSDELIDVIAASDKICHHVHLPLQSGSSRLLARMNRRYTKESYLALADRIRK 385 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML--EQV 382 P+++I++D IVGFPGE ++DF TMD+V ++GY AF+F YSPR GTP + +Q Sbjct: 386 RIPNVSITTDIIVGFPGEEEEDFEDTMDVVRQVGYDSAFTFVYSPRTGTPAAKWAREDQT 445 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441 +V +R L + ++ + A G I EVL+E+ ++ LV GR +V Sbjct: 446 PASVIKDRFDRLLAQTQKDARNRAAAYTGSIQEVLVEEVNRQDPALVTGRMSNNSTVHFP 505 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG +++VR+T+ + GE + Sbjct: 506 GGADLIGRLVQVRLTECRGFYYIGEQI 532 >gi|327312819|ref|YP_004328256.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella denticola F0289] gi|326945460|gb|AEA21345.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella denticola F0289] Length = 442 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 156/450 (34%), Positives = 267/450 (59%), Gaps = 15/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GY+ + ++AD I LNTC +RE A K+Y L Sbjct: 2 KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSVRENAENKIYHRL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ K+G L++ V GC+A+ +++++ N+V GP +Y LP+++ + Sbjct: 62 EAL----HAEQKKGRRLILGVLGCMAERVRDDLIQNHH-ANLVCGPDSYLNLPDMIAQCE 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G +D + S + + + G NR V+ F++I GC+ FC +C+VP+TRG E S Sbjct: 117 NGMNAMDIELSTTETYRDVVPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260 R + ++ E L D G E+TLLGQNVN++ G +G + +F++LL +++ Sbjct: 174 RDVESILKEVHDLHDKGFKEVTLLGQNVNSY-GLLPNGRRPENGTSFAELLRKVAQSVPN 232 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R+R+TTS+P DM++ +++A L ++H P QSGS+ +LK MNR++T +Y + Sbjct: 233 MRVRFTTSNPEDMTEDIVEAIAAEPNLCNHIHFPAQSGSNNVLKLMNRKYTREDYLAKVA 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379 IR + PD +++D +G+ ET++DF+ T+ L+ ++G+ AF FKYS R GT + L Sbjct: 293 AIRRLVPDCGLTTDIFIGYHNETEEDFQQTLSLMREVGFDSAFMFKYSERPGTYAARHLP 352 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 + V E+ K RL L + E N G+ ++LIE+ GK + +L+GR+P ++V Sbjct: 353 DNVPEDEKIRRLNELIRLQTEISAEQNRKDEGREFDILIERFGKRSREQLMGRTPQNKAV 412 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V+ H+IG+ ++VRIT +TL+GE V Sbjct: 413 VIARGGHHIGETVRVRITGSTSATLFGEEV 442 >gi|325268417|ref|ZP_08135049.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella multiformis DSM 16608] gi|324989271|gb|EGC21222.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella multiformis DSM 16608] Length = 442 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 156/450 (34%), Positives = 267/450 (59%), Gaps = 15/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GY+ + ++AD I LNTC +RE A K+Y L Sbjct: 2 KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSVRENAENKIYHRL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ K+G L++ V GC+A+ +++++ N+V GP +Y LP+++ + Sbjct: 62 EAL----HAEQKKGRGLILGVLGCMAERVRDDLIQNHH-ANLVCGPDSYLNLPDMIAQCE 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G +D + S + + + G NR V+ F++I GC+ FC +C+VP+TRG E S Sbjct: 117 NGMNAMDIELSTTETYRDVVPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260 R + ++ E L D G E+TLLGQNVN++ G +G + +F++LL +++ Sbjct: 174 RDVESILKEVHDLHDKGFKEVTLLGQNVNSY-GLLPNGRRPENGTSFAELLRKVAQSVPD 232 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R+R+TTS+P DM++ +++A L ++H P QSGS+ +LK MNR++T +Y + Sbjct: 233 MRVRFTTSNPEDMTEDIVEAVAAEPNLCHHIHFPAQSGSNNVLKLMNRKYTREDYLAKVA 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379 IR + PD +++D +G+ ET++DF+ T+ L+ ++G+ AF FKYS R GT + L Sbjct: 293 AIRRLVPDCGLTTDIFIGYHNETEEDFQQTLSLMREVGFDSAFMFKYSERPGTYAARHLP 352 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 + V E K RL L + E N G+ ++LIE+ GK + +L+GR+P ++V Sbjct: 353 DNVPEEEKIRRLNELIRLQTEISAEQNRKDEGREFDILIERFGKRSREQLMGRTPQNKAV 412 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V+ +H+IG+ ++VRIT +TL+GE V Sbjct: 413 VIARGSHHIGETVRVRITGSTSATLFGEEV 442 >gi|291522245|emb|CBK80538.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coprococcus catus GD/7] Length = 481 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 167/442 (37%), Positives = 257/442 (58%), Gaps = 26/442 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + V ++GCQMN DS ++ + GY ++ +DAD ++ NTC +RE A +VY LG+ Sbjct: 47 YHVVTFGCQMNARDSEKLAGILERIGYAETDT-EDADFVIYNTCTVRENANLRVYGRLGQ 105 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143 ++ K + D+L+ + GC+ Q ++I + V+++ G ++L EL++ R Sbjct: 106 MKRTK----QRHPDMLIALCGCMMQEPLVVDKIRKSYRHVDIIFGTHNIFKLAELIQTRL 161 Query: 144 RFGKRVVD----TDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 GK VVD T+ VED ER Y+ K GV GC+ FC++C+VPY Sbjct: 162 NTGKMVVDIWKDTNQIVEDLPNER------KYSFKTGVNIMF----GCNNFCSYCIVPYV 211 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG E SR ++ E + + +GV E+ LLGQNVN++ GK L+ +F+ LL + +I+ Sbjct: 212 RGRERSREPKDIIREIERDVADGVKEVMLLGQNVNSY-GKNLEN-PISFAKLLQEIEKIE 269 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R+ TSHP+D+SD LI G + +LHLP+QSGS RILK MNR++T Y + Sbjct: 270 GLERIRFMTSHPKDLSDELIAVMGQSKKICRHLHLPLQSGSSRILKLMNRKYTKESYLDL 329 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +DRIR PDI++++D IVGFPGET++DF TMD+V+K+G+ AF+F YS R GTP ++M Sbjct: 330 VDRIRKGCPDISLTTDIIVGFPGETEEDFLETMDVVEKVGFDSAFTFIYSKRTGTPAASM 389 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQS 437 QV E+V +R L K ++++ + G + +VL+E + +V GR Sbjct: 390 ENQVPEDVVKDRFDRLLKLVQQKASEASARFTGSVQKVLVEDVNEHDETMVTGRMSNNLL 449 Query: 438 VVLNSKNHNIGDIIKVRITDVK 459 V IG I+ V + + K Sbjct: 450 VHFKGTPDLIGQIVDVHLEECK 471 >gi|315185787|gb|EFU19553.1| RNA modification enzyme, MiaB family [Spirochaeta thermophila DSM 6578] Length = 448 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 159/448 (35%), Positives = 263/448 (58%), Gaps = 17/448 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++V++YGCQMN +S + G+ R ++ ++AD++VLNTC +R+ A E++ LG Sbjct: 4 YWVETYGCQMNKAESEALIRDLEEAGWGRASAPEEADVVVLNTCTVRQTAEERIAGRLGY 63 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP---QTYYRLPELLERA 143 R LK G ++V+ GC+A+ EE+L P V+VVVG ++ RL L ERA Sbjct: 64 YRYLKKH-----GRFILVLMGCMAERMKEEVLEAFPHVDVVVGTFQKNSFVRL--LRERA 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + ED++ + G G AF+ I GC+ FC++C+VPY RG EI Sbjct: 117 EDLTLLQQLLLTEEDEYSFEKLHHSGL----GFKAFVPIMHGCNNFCSYCIVPYVRGREI 172 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVR 262 SR S++ +E L++ GV EITLLGQNVN++R +G++ F+ LL + L Sbjct: 173 SRRPSEIFEEIEALLEKGVREITLLGQNVNSYRFT-WEGKEMRFAGLLREIVHRFPELPW 231 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+ TSHP+D+S+ LI+ + +LHLPVQ GS+RIL +MNRR+T Y +++RI Sbjct: 232 LRFLTSHPKDLSEELIEVMSASSSICKHLHLPVQHGSNRILGAMNRRYTREHYLNLVERI 291 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P IA+++D +VGFPGET++D T+DL+ ++ +A A+++ Y+PR GT + + Sbjct: 292 RTAMPGIALTTDILVGFPGETEEDLELTLDLMRRVRFADAYTYYYNPRKGTRAYEWGDPI 351 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441 VK ERL + + RE + + +G++++VL+E+ K + +++ R+ + VV Sbjct: 352 PLEVKKERLGRVIRLQRELSLEWKQRKIGRMVDVLVEEVSRKREDEVLARTEQDEMVVFP 411 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469 + IG V++ ++ +T + V+ Sbjct: 412 APPERIGRFAHVQLVSLEGNTFRAKEVI 439 >gi|291459240|ref|ZP_06598630.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Oribacterium sp. oral taxon 078 str. F0262] gi|291418494|gb|EFE92213.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Oribacterium sp. oral taxon 078 str. F0262] Length = 479 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 164/445 (36%), Positives = 251/445 (56%), Gaps = 17/445 (3%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 V GCQM+ D+ ++ + GY DDAD+I+ TC +RE A +K+Y +GR+ Sbjct: 48 LVNVIGCQMSAKDAEKLRGILKGCGYREAEREDDADVILFTTCTVRENANQKLYGRIGRL 107 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLERA-R 144 ++ R +++ + GC+ Q E E I +R P V ++ G Y+L ELL R R Sbjct: 108 KHQCERR----KGMILGITGCMMQEKDEVETIRKRYPYVKLIFGTHNVYKLAELLYRTLR 163 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +R V+ E L + RK A + I GC+ FCT+C+VPY RG E S Sbjct: 164 RDERTVEIIDDTSLIVENLPSL-----RKTDFRASVNISYGCNNFCTYCIVPYVRGREKS 218 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS +++ E R L+ +GV EI LLGQNVN++ GLD E+ F +LL +SEI GL R+R Sbjct: 219 RSSEEILRECRDLVRDGVKEIMLLGQNVNSY---GLDREELRFPELLRRVSEIPGLRRIR 275 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + T +P+D S+ LI G+ + + ++HLP+QSGS +L+ MNR +T Y ++ RIR Sbjct: 276 FMTPNPKDFSEELIDLIGERENICRHIHLPLQSGSTEVLRRMNRHYTKESYLALVRRIRE 335 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD+++++D IVGFPGE++ DF+ TMD+V ++G+ AF+F YS R GTP + E V E Sbjct: 336 KLPDVSLTTDIIVGFPGESERDFQDTMDVVRRVGFDSAFTFVYSKRSGTPAAKW-EGVSE 394 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSK 443 + +R L +RE +G+++EVL+E+ +EK G L GR V Sbjct: 395 ELVKDRFHRLLDAVRESSAENEGRDIGKVMEVLVEERDREKPGFLTGRLSNNILVHFRGG 454 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 IG+++ V + + + G L+ Sbjct: 455 ERLIGELVSVELLESRGFYYMGRLL 479 >gi|282879448|ref|ZP_06288185.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccalis ATCC 35310] gi|281298420|gb|EFA90852.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella buccalis ATCC 35310] Length = 497 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 169/460 (36%), Positives = 262/460 (56%), Gaps = 32/460 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GYE + ++AD I LNTC +RE A K+Y+ Sbjct: 50 KKLYIETYGCQMNVADSEVVASVMQMAGYEICDKEEEADAIFLNTCSVRENAENKIYN-- 107 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R+ +L R K+G +L++ V GC+A+ +++L ++V GP +Y LP+++ +A Sbjct: 108 -RLDSLHAER-KKGRNLILGVLGCMAERVKDDLLDNHH-TDLVCGPDSYLNLPDMIAQAE 164 Query: 145 FGKRVVDTDYSVEDKF-----ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G + +D + S + + +RL I G F++I GC+ FC +C+VPYTR Sbjct: 165 TGNKAIDIELSKTETYKDVVPQRLLIGKIG--------GFVSIMRGCNNFCHYCIVPYTR 216 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----------RGKGLDGEKCTFSD 249 G E SR + ++ E R L D EITLLGQNVN++ G+ + E F Sbjct: 217 GRERSRDVESILREVRDLRDKHCKEITLLGQNVNSYCFTIPEHLSATGETIPAETIDFPK 276 Query: 250 LLYSLS-EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 LL ++ E+ G VR+R+T+SHP+DMSD ++ + + ++HLPVQSGS++ILK MNR Sbjct: 277 LLRRVAHEVPG-VRIRFTSSHPKDMSDDTLRVIAEEPNVCKHIHLPVQSGSNKILKLMNR 335 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 ++T Y I+ IR + PD IS+D VG+ GET++D + ++ L+ +GY AF FKYS Sbjct: 336 KYTVEWYMDRINAIRRIIPDCGISTDMFVGYHGETEEDHQQSLVLMRTVGYDSAFMFKYS 395 Query: 369 PRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKG 426 R GT S L + V E K RL + E N G+ +VL+E K + Sbjct: 396 ERPGTYASKHLPDDVPEEEKIRRLNEMIHLQTELSAVSNKKDEGKTFDVLVEGFSKRSRE 455 Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 +L GR+ + VV + NH+IG+ ++VRI +TL GE Sbjct: 456 QLCGRTEQNKMVVFDKVNHHIGETVRVRIVGSTSATLLGE 495 >gi|318040423|ref|ZP_07972379.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus sp. CB0101] Length = 464 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 171/451 (37%), Positives = 261/451 (57%), Gaps = 23/451 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM + S GY + +ADL++ NTC IR+ A +KVYS+LGR Sbjct: 21 YWITTFGCQMNKADSERMAGILESMGYSEAQAELEADLVLYNTCTIRDNAEQKVYSYLGR 80 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + +L +VVAGCVAQ EGE +LRR P +++V+GPQ RL LL + G Sbjct: 81 ----QAQRKRVNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDVLLAQVEQG 136 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++VV T+ E ++ R + ++ + GC++ CT+CVVP RG E SR Sbjct: 137 QQVVATEE--HHILEDITTA----RRDSSICGWVNVIYGCNERCTYCVVPSVRGKEQSRL 190 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260 + E L G EITLLGQN++A+ G+ L G + T +DLL + ++GL Sbjct: 191 PEAIKLEMEGLAAQGFKEITLLGQNIDAY-GRDLPGITPEGRRQHTLTDLLQFVHNVEGL 249 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHPR ++ LI A DL + + H+P QSG D +LK+M R +T YR+II+ Sbjct: 250 ERIRFATSHPRYFTERLIDACADLPKVCEHFHIPFQSGDDDVLKAMARGYTVDRYRRIIE 309 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR PD +IS+D IV FPGETD +R T+DL+++IG+ Q + YSPR TP ++ + Sbjct: 310 RIRERMPDASISADVIVAFPGETDAQYRRTLDLIEEIGFDQVNTAAYSPRPNTPAADWPD 369 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS-----PW 434 Q+ E VK ERL + + + G+ +VL+E + K+ +++GR+ + Sbjct: 370 QLSEEVKVERLREINALVERVAKGRSARYAGRTEQVLVEGINPKDGDQVMGRTRTNRLTF 429 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 + + GD++ VRI +V+ +L G Sbjct: 430 FAAARTDGNRWEPGDLVDVRIDEVRAFSLSG 460 >gi|262197995|ref|YP_003269204.1| RNA modification enzyme, MiaB family [Haliangium ochraceum DSM 14365] gi|262081342|gb|ACY17311.1| RNA modification enzyme, MiaB family [Haliangium ochraceum DSM 14365] Length = 521 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 167/468 (35%), Positives = 267/468 (57%), Gaps = 44/468 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++++YGCQMNV DS + + GY R S D AD+I++NTC +RE+A +KV + Sbjct: 45 RVYLETYGCQMNVADSDMLTGILLDAGYRRAASADAADVILINTCAVRERAEDKVLARAR 104 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144 ++ LK R D+++ +AGC+A+ + +L ++P V++V GP +Y R+ ELL RAR Sbjct: 105 QLSALKRQR----PDMVLGIAGCMAEHLKDSLLEQAPYVDIVAGPDSYRRMGELLARARD 160 Query: 145 ----------------------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182 G +VVD + +E LS GG G++ F+TI Sbjct: 161 LAAPAAGERADSDAPRPVRAPGVGAQVVDVQLDKGETYEGLSGALGG----DGISGFVTI 216 Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242 Q GCDKFCTFCVVP+TRG E + +++ + R ++ G E+ LLGQ VN++R Sbjct: 217 QRGCDKFCTFCVVPFTRGRERGSAPREILRQVRAYVEAGYREVVLLGQTVNSYRY----- 271 Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 E F++LL +++ + GL R+R+T+ +P D + +I A D + Y+HLP+QSGSD + Sbjct: 272 EDVGFAELLRAVARVDGLERIRFTSPYPVDFTAEVIDAIASEDKVCKYVHLPLQSGSDEV 331 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L M R +T ++R I+ +R+ PDIAIS+D + F GET+ D +AT+ L+ ++ + A Sbjct: 332 LARMRRGYTVDDFRAIVAALRARMPDIAISTDILSSFSGETEADHQATLALMRELRFDSA 391 Query: 363 FSFKYSPR-LGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLI 418 F F+YS R L + + V E K RL + LQ+++ + + A +G+ VL+ Sbjct: 392 FMFRYSERSLTYAAKKLPDDVSEADKKRRLAEIIALQERISAEVFA---AQIGKRERVLL 448 Query: 419 EKHGKEKG-KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 K +LVGR+ +SV++ + IGDI++V I ++TL+G Sbjct: 449 HNRSKRSDQQLVGRTDGFKSVIVPAAGLAIGDIVEVEIERATMATLFG 496 >gi|227485050|ref|ZP_03915366.1| tRNA 2-methylthioadenine synthetase [Anaerococcus lactolyticus ATCC 51172] gi|227236883|gb|EEI86898.1| tRNA 2-methylthioadenine synthetase [Anaerococcus lactolyticus ATCC 51172] Length = 451 Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 170/453 (37%), Positives = 267/453 (58%), Gaps = 27/453 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + + ++GCQMN +DS R+ + GY AD I+ NTC +RE A K+Y Sbjct: 16 KTYNITTFGCQMNEHDSERISYILEDLGYVYEEDRKKADFILFNTCLVRENAELKLY--- 72 Query: 85 GRIRNLKNSRIKEGG-DLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLE 141 G++ +LK +IKE + ++ V+GC+ Q E + I+ + V+++ G + L +L+ Sbjct: 73 GQVSSLK--KIKESHPEKIIAVSGCMMQTEVARQVIIDKHREVDIIFGTKNINSLSDLIF 130 Query: 142 R-ARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 R G+RVVD TD +V+D F + YN A++ I GCD FC++C+VP + Sbjct: 131 RYLETGERVVDISTD-NVKDDFVK-------YNTPNHFQAYVNIMTGCDNFCSYCIVPES 182 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG E SR S +++E L++ G EITLLGQNVN++ K TF +LL +++I Sbjct: 183 RGREESRRPSSIIEEVEYLVNQGYKEITLLGQNVNSYGNKA--DFNHTFPELLEKVAQIP 240 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L RLR+TTSHP+D+SD LIK D + Y HLP+QSGSD++LK MNR++T +Y + Sbjct: 241 NLKRLRFTTSHPKDLSDELIKVIKRNDNICKYFHLPLQSGSDKVLKDMNRKYTQEKYLER 300 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +++ P+IAIS+D IVG+P ET++DF T+ + ++GY AF+FKYSPR T + + Sbjct: 301 ARKLKEEIPEIAISTDIIVGYPTETEEDFEQTLKVCKEVGYDTAFTFKYSPRPKTRAAKL 360 Query: 379 LEQVDENVKA--ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWL 435 D+ V+A ++LL L + ++ N +G+ +EVL+E K + L GR+ Sbjct: 361 TPIDDDIVQARFDKLLDLLYPIFNEK---NQTYIGKTVEVLLESESKNNPEVLTGRTDDY 417 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V + + IG+ +KV+IT T+ G+LV Sbjct: 418 KLVHVKADKSLIGEFVKVKITGNTSFTISGDLV 450 >gi|325859700|ref|ZP_08172830.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella denticola CRIS 18C-A] gi|325482626|gb|EGC85629.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Prevotella denticola CRIS 18C-A] Length = 442 Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 156/450 (34%), Positives = 267/450 (59%), Gaps = 15/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GY+ + ++AD I LNTC +RE A K+Y L Sbjct: 2 KKLYIETYGCQMNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSVRENAENKIYHRL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ K+G L++ V GC+A+ +++++ N+V GP +Y LP+++ + Sbjct: 62 EAL----HAEQKKGRRLILGVLGCMAERVRDDLIQNHH-ANLVCGPDSYLNLPDMIAQCE 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G +D + S + + + G NR V+ F++I GC+ FC +C+VP+TRG E S Sbjct: 117 NGMNAMDIELSTTETYRDVVPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260 R + ++ E L D G E+TLLGQNVN++ G +G + +F++LL +++ Sbjct: 174 RDVESILKEVHDLHDKGFKEVTLLGQNVNSY-GLLPNGRRPENGTSFAELLRKVAQSVPD 232 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R+R+TTS+P DM++ +++A L ++H P QSGS+ +LK MNR++T +Y + Sbjct: 233 MRVRFTTSNPEDMTEDIVEAIAAEPNLCNHIHFPAQSGSNNVLKLMNRKYTREDYLAKVA 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379 IR + PD +++D +G+ ET++DF+ T+ L+ ++G+ AF FKYS R GT + L Sbjct: 293 AIRRLVPDCGLTTDIFIGYHNETEEDFQQTLSLMREVGFDSAFMFKYSERPGTYAARHLP 352 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 + V E+ K RL L + E N G+ ++LIE+ GK + +L+GR+P ++V Sbjct: 353 DNVPEDEKIRRLNELIRLQTEISAEQNRKDEGREFDILIERFGKRSREQLMGRTPQNKAV 412 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V+ H+IG+ ++VRIT +TL+GE V Sbjct: 413 VIARGGHHIGETVRVRITGSTSATLFGEEV 442 >gi|289178890|gb|ADC86136.1| tRNA 2-methylthioadenosine synthase [Bifidobacterium animalis subsp. lactis BB-12] Length = 515 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 158/416 (37%), Positives = 243/416 (58%), Gaps = 25/416 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS----MDDADLIVLNTCHIREKAAEKVYS 82 ++V + GCQMNV+DS R+ + GY + D D++++NTC +RE A E++Y Sbjct: 61 YYVHTLGCQMNVHDSERIAGVMEENGYRPASEEQFLAHDVDVVIMNTCAVRENATERMYG 120 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G+ + K + + GC+AQ + E I +R+P V+ V G + LP LL++ Sbjct: 121 TIGKWKRFK----YRNPHAQIAIGGCMAQLDRERIAKRTPWVDAVFGTKNIEDLPALLDQ 176 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 AR + T V + L +R +A++ I GC+ CTFC+VP TRG E Sbjct: 177 ARAAQH---TQVKVNEDLT-LFPSQLPAHRASAHSAWVAISMGCNNTCTFCIVPTTRGKE 232 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 R V+ E R+ + NG EITLLGQNVN++ G G+ G++ FS LL + EI+GL R Sbjct: 233 RDRRPGDVLAEIRETVTNGAKEITLLGQNVNSY-GYGI-GDRYAFSKLLRACGEIEGLER 290 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + + I+ +I Sbjct: 291 VRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSERFLGILAKI 350 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PD IS+D IVGFPGET++DF+ T+ +V++ ++ AF+F YSPR GTP + M EQV Sbjct: 351 REAMPDAQISTDIIVGFPGETEEDFQQTLRVVEEARFSSAFTFIYSPRPGTPAAAM-EQV 409 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGR 431 +V + ERLL +Q+++ E+ + + VG+ +EV+I K E + GR Sbjct: 410 PYDVALDRLERLLAVQERITEEIL---EKFVGRDVEVMITGVTGKKDAETHRYTGR 462 >gi|87125523|ref|ZP_01081368.1| hypothetical protein RS9917_02081 [Synechococcus sp. RS9917] gi|86166823|gb|EAQ68085.1| hypothetical protein RS9917_02081 [Synechococcus sp. RS9917] Length = 465 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 172/451 (38%), Positives = 263/451 (58%), Gaps = 23/451 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++V ++GCQMN DS RM + S GY ++ +ADL++ NTC IR+ A +KVYS+LGR Sbjct: 23 YWVTTFGCQMNKADSERMAGILESMGYREASAELEADLVLYNTCTIRDNAEQKVYSYLGR 82 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + +L +VVAGCVAQ EGE +LRR P +++V+GPQ RL LL + G Sbjct: 83 ----QAQRKRTNPNLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDVLLAQVEQG 138 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++VV T+ E ++ R + ++ + GC++ CT+CVVP RG E SR Sbjct: 139 QQVVATEE--HHILEDITTA----RRDSAICGWVNVIYGCNERCTYCVVPSVRGKEQSRL 192 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLSEIKGL 260 + + E L G EITLLGQN++A+ G+ L G + T +DLL + +++GL Sbjct: 193 PAAIRLEMEGLAAQGFKEITLLGQNIDAY-GRDLPGITPEGRRQHTLTDLLQFVHDVEGL 251 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHPR ++ LI A +L + + H+P QSG D +LK+M R +T YR+IID Sbjct: 252 ERIRFATSHPRYFTERLIDACAELPKVCEHFHIPFQSGDDAVLKAMARGYTVDRYRRIID 311 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR PD AIS+D IV FPGET +R T+DL++ IG+ Q + YSPR TP ++ + Sbjct: 312 RIRERMPDAAISADVIVAFPGETAAQYRRTLDLIEAIGFDQVNTAAYSPRPNTPAADWPD 371 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS-----PW 434 Q+ E VK ERL + + + + G+ +VL+E + K+ +++GR+ + Sbjct: 372 QLPEAVKVERLREINALVERVARARSARYAGRTEQVLVEGINPKDPEQVMGRTRTNRLTF 431 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 + + GD+++VRI V+ +L G Sbjct: 432 FPAARTDGSRWQPGDLVEVRIEAVRSFSLSG 462 >gi|326574282|gb|EGE24230.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella catarrhalis 101P30B1] Length = 356 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 148/359 (41%), Positives = 216/359 (60%), Gaps = 23/359 (6%) Query: 126 VVVGPQTYYRLPELLE--------------RARFGKRVVDTDYSVEDKFERLSIVDGGYN 171 +V GPQT +RLPEL E + R G VVD + +KF+ L Sbjct: 1 MVFGPQTLHRLPELYESTTNQAKTDMGQIPKNRIG--VVDVSFPSIEKFDFLP-----EP 53 Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231 R G TAF++I EGC K+C+FCVVPYTRG E+SR L V+ E L + GV E+ LLGQN Sbjct: 54 RVEGYTAFVSIMEGCSKYCSFCVVPYTRGEELSRPLDDVLAEIDSLAEQGVREVNLLGQN 113 Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 VN +RG+ DG C FS+LL+ +S I G+ R+RYTTSHP + +D +I+A+ +D L+ +L Sbjct: 114 VNGYRGEKDDGSICRFSELLHYVSYIDGIERIRYTTSHPLEFTDDIIEAYQSIDKLVSHL 173 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 HLP+QSGS+++L +M R HT Y I ++R +RPD+ +SSDFI+GFPGETD+DF T+ Sbjct: 174 HLPIQSGSNQVLAAMKRNHTVDVYMNQIAKLRKIRPDLHLSSDFIIGFPGETDEDFLQTL 233 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411 + + ++SF YS R GTP S++ + V K +RL Q+ ++ A VG Sbjct: 234 QFAKDLDFDHSYSFIYSKRPGTPASDLPDDVSLETKKQRLAVFQELIKRSTFDKTQAMVG 293 Query: 412 QIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD-VKISTLYGELV 468 Q + VL E+ + +G L G + +SV+ + +G + ++IT + + + GELV Sbjct: 294 QTLRVLAEEPANRRQGYLHGTADNTRSVIFKADTDLLGKFVMIKITKAISMHLVEGELV 352 >gi|300784287|ref|YP_003764578.1| methylase of isopentenylated A37 derivatives in tRNA [Amycolatopsis mediterranei U32] gi|299793801|gb|ADJ44176.1| methylase of isopentenylated A37 derivatives in tRNA [Amycolatopsis mediterranei U32] Length = 497 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 154/419 (36%), Positives = 241/419 (57%), Gaps = 24/419 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ + ++++GCQMNV+DS R+ GY + DLIV NTC +RE A K+Y Sbjct: 6 APRAYQIRTFGCQMNVHDSERLAGQLEDAGYVPATAGAKPDLIVFNTCAVRENADNKLYG 65 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 LG +R K + DL + V GC+AQ + EI++R+P V+VV G LP LLER Sbjct: 66 TLGHLRPDKVANP----DLQIAVGGCLAQKDRGEIVKRAPWVDVVFGTHNIGALPTLLER 121 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 AR V+ S+E L R+ +++++ GC+ CTFC+VP RG Sbjct: 122 ARHNAEAEVEILESLETFPSTLPA-----RRESSYASWVSVSVGCNNTCTFCIVPALRGK 176 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 E R +++ E L+ GV E+TLLGQNVN++ G++ G++ F LL + + GL Sbjct: 177 ERDRRPGEILAEVEALVAEGVLEVTLLGQNVNSY---GVEFGDRLAFGKLLRACGTVDGL 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP + +I A + LH+P+QSGSDR+L+ M R + + + I+D Sbjct: 234 ERVRFTSPHPAAFTSDVIDAMAATPNVCHQLHMPLQSGSDRVLREMKRSYRSARFLNILD 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R+ PD AI++D IVGFPGET++DF+AT+D+V + ++ AF+F+YS R GTP + M Sbjct: 294 EVRAAMPDAAITTDIIVGFPGETEEDFQATLDVVAQARFSSAFTFQYSKRPGTPAATMDG 353 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432 Q+ + V + ERL+ LQ + ++ N VG+ +E+L+ + E ++ GR+ Sbjct: 354 QLPKEVVQERYERLVELQNAISWEE---NKKIVGRRVELLVAAGEGRKDAETHRMSGRA 409 >gi|183601356|ref|ZP_02962726.1| hypothetical protein BIFLAC_01822 [Bifidobacterium animalis subsp. lactis HN019] gi|183218962|gb|EDT89603.1| hypothetical protein BIFLAC_01822 [Bifidobacterium animalis subsp. lactis HN019] Length = 492 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 158/416 (37%), Positives = 243/416 (58%), Gaps = 25/416 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS----MDDADLIVLNTCHIREKAAEKVYS 82 ++V + GCQMNV+DS R+ + GY + D D++++NTC +RE A E++Y Sbjct: 38 YYVHTLGCQMNVHDSERIAGVMEENGYRPASEEQFLAHDVDVVIMNTCAVRENATERMYG 97 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G+ + K + + GC+AQ + E I +R+P V+ V G + LP LL++ Sbjct: 98 TIGKWKRFK----YRNPHAQIAIGGCMAQLDRERIAKRTPWVDAVFGTKNIEDLPALLDQ 153 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 AR + T V + L +R +A++ I GC+ CTFC+VP TRG E Sbjct: 154 ARAAQH---TQVKVNEDLT-LFPSQLPAHRASAHSAWVAISMGCNNTCTFCIVPTTRGKE 209 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 R V+ E R+ + NG EITLLGQNVN++ G G+ G++ FS LL + EI+GL R Sbjct: 210 RDRRPGDVLAEIRETVTNGAKEITLLGQNVNSY-GYGI-GDRYAFSKLLRACGEIEGLER 267 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + + I+ +I Sbjct: 268 VRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSERFLGILAKI 327 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PD IS+D IVGFPGET++DF+ T+ +V++ ++ AF+F YSPR GTP + M EQV Sbjct: 328 REAMPDAQISTDIIVGFPGETEEDFQQTLRVVEEARFSSAFTFIYSPRPGTPAAAM-EQV 386 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGR 431 +V + ERLL +Q+++ E+ + + VG+ +EV+I K E + GR Sbjct: 387 PYDVALDRLERLLAVQERITEEIL---EKFVGRDVEVMITGVTGKKDAETHRYTGR 439 >gi|219683412|ref|YP_002469795.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bifidobacterium animalis subsp. lactis AD011] gi|241191145|ref|YP_002968539.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196551|ref|YP_002970106.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|219621062|gb|ACL29219.1| RNA modification enzyme, MiaB family protein [Bifidobacterium animalis subsp. lactis AD011] gi|240249537|gb|ACS46477.1| hypothetical protein Balac_1121 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251105|gb|ACS48044.1| hypothetical protein Balat_1121 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794134|gb|ADG33669.1| hypothetical protein BalV_1081 [Bifidobacterium animalis subsp. lactis V9] Length = 491 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 158/416 (37%), Positives = 243/416 (58%), Gaps = 25/416 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS----MDDADLIVLNTCHIREKAAEKVYS 82 ++V + GCQMNV+DS R+ + GY + D D++++NTC +RE A E++Y Sbjct: 37 YYVHTLGCQMNVHDSERIAGVMEENGYRPASEEQFLAHDVDVVIMNTCAVRENATERMYG 96 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G+ + K + + GC+AQ + E I +R+P V+ V G + LP LL++ Sbjct: 97 TIGKWKRFK----YRNPHAQIAIGGCMAQLDRERIAKRTPWVDAVFGTKNIEDLPALLDQ 152 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 AR + T V + L +R +A++ I GC+ CTFC+VP TRG E Sbjct: 153 ARAAQH---TQVKVNEDLT-LFPSQLPAHRASAHSAWVAISMGCNNTCTFCIVPTTRGKE 208 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 R V+ E R+ + NG EITLLGQNVN++ G G+ G++ FS LL + EI+GL R Sbjct: 209 RDRRPGDVLAEIRETVTNGAKEITLLGQNVNSY-GYGI-GDRYAFSKLLRACGEIEGLER 266 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP +D +I A + +M LH P+QSGSDRIL++M R + + + I+ +I Sbjct: 267 VRFTSPHPAAFTDDVIAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSERFLGILAKI 326 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PD IS+D IVGFPGET++DF+ T+ +V++ ++ AF+F YSPR GTP + M EQV Sbjct: 327 REAMPDAQISTDIIVGFPGETEEDFQQTLRVVEEARFSSAFTFIYSPRPGTPAAAM-EQV 385 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGR 431 +V + ERLL +Q+++ E+ + + VG+ +EV+I K E + GR Sbjct: 386 PYDVALDRLERLLAVQERITEEIL---EKFVGRDVEVMITGVTGKKDAETHRYTGR 438 >gi|260438409|ref|ZP_05792225.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus DSM 2876] gi|292808995|gb|EFF68200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus DSM 2876] Length = 473 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 159/450 (35%), Positives = 259/450 (57%), Gaps = 24/450 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + ++++GCQMN DS ++ + + G+ ++ ++AD ++ NTC +RE A ++Y LGR Sbjct: 40 YHIQTFGCQMNARDSEKLAGILEAAGFVHTDN-EEADFVIYNTCSVRENANNRLYGHLGR 98 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ +K K D+L+ + GC+ Q E E+I + +++V G ++ EL+ Sbjct: 99 MKVVK----KNNPDMLIAICGCMMQEPDEIEKIKTKYKFIDIVFGTHNIFKFAELVHTKL 154 Query: 145 FGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + ++ DT+ VED L V RK + + I GC+ FC++C+VPY R Sbjct: 155 NSEGMIIDIWKDTNQIVED----LPDV-----RKYTFKSGVNIMYGCNNFCSYCIVPYVR 205 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR ++ E + + GV E+ LLGQNVN++ GK L+ +F++LL +S+++G Sbjct: 206 GRERSREPKDIIREVERFVKEGVKEVMLLGQNVNSY-GKTLEN-PISFAELLKEVSKVEG 263 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+ T HP+D+SD LI+ + ++HLP+QSGS RILK MNR +T Y +++ Sbjct: 264 LERIRFMTPHPKDLSDELIETMAVTPKVCHHIHLPLQSGSSRILKLMNRHYTKESYLELV 323 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +IR PD A+++D IVGFPGET++DF TMD+V + + A++F YS R GTP ++M Sbjct: 324 KKIRKRMPDAALTTDIIVGFPGETEEDFNDTMDVVREAEFDSAYTFIYSKREGTPAASMT 383 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438 EQ+ E V ER L K++ E VG+ ++VL+E+ + +G L GR V Sbjct: 384 EQIPEEVTKERFDRLLKQVGESSKKRCGLDVGKTLKVLVEEVNQNHEGLLTGRLENNTLV 443 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +G I V++ + K GELV Sbjct: 444 HFKGNSSLVGTICDVKLNESKGFYYIGELV 473 >gi|153853169|ref|ZP_01994578.1| hypothetical protein DORLON_00563 [Dorea longicatena DSM 13814] gi|149753955|gb|EDM63886.1| hypothetical protein DORLON_00563 [Dorea longicatena DSM 13814] Length = 481 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 168/448 (37%), Positives = 253/448 (56%), Gaps = 14/448 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P F V ++GCQMN DS ++ + GY + D+AD I+ NTC +RE A +VY Sbjct: 44 PLTFCVTTFGCQMNARDSEKLCGILEKIGYVEA-AEDEADFIIFNTCTVRENANMRVYGR 102 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLE 141 LG+++ R K+ +++ + GC+ Q E E L+ S V+++ G ++ EL+ Sbjct: 103 LGQLK----PRKKKNPHMMIGLCGCMMQEPEVVEKLKTSYRYVDIIFGTHNIFKFAELIV 158 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +R+V + DK D ++ K GV I GC+ FC++C+VPY RG Sbjct: 159 TRFESQRMVIDIWKDTDKIVENLPNDRKFSFKSGVN----IMFGCNNFCSYCIVPYVRGR 214 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R+L+ +GV E+ LLGQNVN++ GK L+ TF+ LL + +I+GL Sbjct: 215 ERSRDPEAIISEIRQLVADGVVEVMLLGQNVNSY-GKNLE-HPITFAQLLERIEQIEGLE 272 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D+SD LI+ G + +LHLPVQSGS +ILK MNR +T +Y +++++ Sbjct: 273 RIRFMTSHPKDLSDELIEVMGKSKKICKHLHLPVQSGSSKILKKMNRHYTKEQYLELVEK 332 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR PD+++++D IVGFPGET++DF TMD+V K+ Y AF+F YS R GTP + M +Q Sbjct: 333 IRRSVPDVSLTTDIIVGFPGETEEDFEETMDIVRKVRYDSAFTFIYSKRTGTPAAVMEDQ 392 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVL 440 V E+V R L K++ G + LIE + +V GR V + Sbjct: 393 VPEDVVKNRFDRLLKEVHSIASEVCSVHEGTVQTALIESVSEHDPSMVTGRLSNNLLVHI 452 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + VR+T+ K GEL Sbjct: 453 KGDKGMIGRLADVRLTECKGFYYLGELA 480 >gi|227495825|ref|ZP_03926136.1| possible tRNA 2-methylthioadenine synthetase [Actinomyces urogenitalis DSM 15434] gi|226834647|gb|EEH67030.1| possible tRNA 2-methylthioadenine synthetase [Actinomyces urogenitalis DSM 15434] Length = 588 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 151/410 (36%), Positives = 244/410 (59%), Gaps = 27/410 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD------------DADLIVLNTC 70 +P+ + V++ GCQMNV+DS M + + GY RV + AD++++NTC Sbjct: 32 LPRTYHVRTLGCQMNVHDSEHMAGLLEAAGYRRVEEVPAAAARATEAGDGGADVVIINTC 91 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130 +RE AA +++ LG++ +K R + + VAGC+AQ GE I+ ++P V+VV G Sbjct: 92 SVRENAATRLFGNLGQLAAVKRERP----GMQIAVAGCLAQQMGEGIVEKAPWVDVVFGT 147 Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDK 188 LP LLERAR + + +VE + E L + +R A+++I GC+ Sbjct: 148 HNLDVLPALLERARH-----NAEAAVELE-ESLKVFPSTLPTRRESAYAAWVSIAVGCNN 201 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248 CTFC+VP RG + R +V+ E + GV E+TLLGQNVN++ G G G++ F+ Sbjct: 202 TCTFCIVPSLRGKQRDRRPGEVLAEIEAVAAQGVTEVTLLGQNVNSY-GVGF-GDRGAFA 259 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 LL + ++G+ R+R+T+ HP + +I A + +MP LH+P+QSGSD++L++M R Sbjct: 260 KLLRAAGGVEGIERVRFTSPHPAAFTSDVIDAMAETPQVMPSLHMPLQSGSDKVLRAMRR 319 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + + + +I+D +R P+ AI++D IVGFPGET++DF+AT+++V+K +A AF+F+YS Sbjct: 320 SYRSERFLRILDEVREKIPNAAITTDLIVGFPGETEEDFQATLEVVEKARFASAFTFEYS 379 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 PR GTP ++ L QV V +R L + +R N G ++E+L+ Sbjct: 380 PRPGTPAAD-LPQVPVEVVKDRYKRLDELVRRITHEENVRQEGSVVELLV 428 >gi|124026430|ref|YP_001015545.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. NATL1A] gi|229890598|sp|A2C471|MIAB_PROM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|123961498|gb|ABM76281.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. NATL1A] Length = 463 Score = 276 bits (705), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 164/454 (36%), Positives = 257/454 (56%), Gaps = 23/454 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ ++GCQMN DS RM + GY ADL++ NTC IR+ A +KVYS+LGR Sbjct: 21 YWITTFGCQMNKADSERMSGILEYMGYYPAEEELKADLVLYNTCTIRDSAEQKVYSYLGR 80 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R + +L +VVAGC+AQ EGE +LRR P +++++GPQ RL LL + G Sbjct: 81 ----QAIRKRSLPNLKIVVAGCLAQQEGESLLRRVPEIDLLMGPQHCNRLESLLNQVDSG 136 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++V+ T E++F I R ++ I GC++ CT+CVVP RG E SR+ Sbjct: 137 QQVLAT----EEQFILEDITTP--RRDSSFCGWVNIIYGCNERCTYCVVPSVRGKEQSRT 190 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------KCTFSDLLYSLSEIKGL 260 + E L +G EITLLGQN++A+ G+ + + T S LL + +I+G+ Sbjct: 191 PEAIKSEVEDLAKSGYKEITLLGQNIDAY-GRDFQSQNKEASAQITLSYLLKYIHDIEGI 249 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHPR + LI +L + + H+P QSGS++ILK+M R +T Y+ II+ Sbjct: 250 ERIRFATSHPRYFTKELIDTCSELPKVCEHFHIPFQSGSNKILKNMGRGYTIESYKNIIN 309 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 I+S P AIS D IV FPGE++ D+ T+ L+D+I + + YSPR TP + Sbjct: 310 YIKSKIPKAAISGDAIVAFPGESETDYEQTLSLIDEIKFDHVNTAAYSPRPNTPAATWPR 369 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS-----PW 434 Q++E++K +RL + + N E+LIE + K+ +L+GR+ + Sbjct: 370 QLNEDIKVKRLREINSLVENIAKERNQRYKNTSQEILIENINPKDSFQLMGRTRTNRLTF 429 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + N + +G++IKV+ITDV+ +L +L+ Sbjct: 430 FPRSLENGVENKLGELIKVKITDVRPFSLTAKLL 463 >gi|328950938|ref|YP_004368273.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Marinithermus hydrothermalis DSM 14884] gi|328451262|gb|AEB12163.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Marinithermus hydrothermalis DSM 14884] Length = 445 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 168/454 (37%), Positives = 259/454 (57%), Gaps = 39/454 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + ++GCQMN YD+ ++ S G E V+++ DA+ +++NTC +R K EKV S LG Sbjct: 7 RAHLITFGCQMNEYDTHLVQSELASLGAEFVDTIQDANFVLVNTCAVRGKPVEKVKSLLG 66 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++R K R LLV + GCVAQ EG+EI ++ V++++GP ++ + LE Sbjct: 67 KLRKEKERR-----PLLVGMMGCVAQLEEGQEIAKKFD-VDILLGPGAITQIAKALES-- 118 Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-----GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 DKF L+ D K ++AF++I GC+ CT+C+VP TR Sbjct: 119 ------------HDKFWDLTFRDEVNTYVPPPPKGTLSAFVSIIRGCNHHCTYCIVPKTR 166 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E+SR +++E +L GV E+TLLGQNVN++ GK G +F++LL + +I G Sbjct: 167 GPEVSRHPDLILEEIERLKAAGVLEVTLLGQNVNSY-GKDQPGYP-SFAELLRMVGQI-G 223 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ-- 317 + R+++TTSHP + +D +I+A + + Y+HLPVQSGS+R+L+ M R EYR+ Sbjct: 224 IPRIKFTTSHPVNFTDDIIQAIAETPQVCRYIHLPVQSGSNRVLRRMGR-----EYRREW 278 Query: 318 IIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +DR+R+++ PD+ +S+D IVGFPGET+ DF T+ L D++GY A+ F YSPR GTP Sbjct: 279 YLDRVRAIKEALPDVVLSTDIIVGFPGETEADFEETLTLYDEVGYDHAYMFIYSPRPGTP 338 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 + + + VK RL L +K +E N G+++EVL+ KE G G Sbjct: 339 SARHFQDLPREVKVARLQRLIEKQKEWSYRKNKRWEGRVVEVLVRGTAKEDGYAEGHDRG 398 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V++ + + +V I LYGE+V Sbjct: 399 NHPVLVPAAQAPEPGLYQVEIKQATPHLLYGEVV 432 >gi|325285677|ref|YP_004261467.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Cellulophaga lytica DSM 7489] gi|324321131|gb|ADY28596.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Cellulophaga lytica DSM 7489] Length = 480 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 166/466 (35%), Positives = 262/466 (56%), Gaps = 35/466 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGC MN DS + + +G+ ++DADL+++NTC IREKA + L Sbjct: 26 RKLYIESYGCAMNFSDSEIVASILSEEGFNTTKVLEDADLVLVNTCSIREKAELTIRKRL 85 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K ++ L V V GC+A+ + L IV++VVGP Y LP L++ Sbjct: 86 EKFNAVKRTK----PHLKVGVLGCMAERLKSQFLEEEKIVDMVVGPDAYKDLPNLIKEVD 141 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ ++ S E+ + ++ V N G++A+++I GCD CTFCVVP+TRG E S Sbjct: 142 EGRNAINVILSKEETYGDVAPVRLNTN---GISAYVSITRGCDNMCTFCVVPFTRGRERS 198 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEKCT---FSDLL 251 R +++E L + G EITLLGQNV++ W G GL + +K T F++LL Sbjct: 199 REPQSILEEVNDLWNRGYKEITLLGQNVDSYLWYGGGLKKDFNQATEMQKATAVNFANLL 258 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 + + +R+R++TS+P+D++ ++K D + ++HLPVQSGSDRILK+MNR HT Sbjct: 259 EMTAIAQPKMRIRFSTSNPQDLTLDVVKTMAKYDNICKHIHLPVQSGSDRILKAMNRLHT 318 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EY +ID IR + PD AIS D I GFP ET++D + T+ L++ + Y + + YS R Sbjct: 319 REEYFTLIDNIRQIIPDCAISQDMIAGFPTETEEDHKDTLSLLEYVKYDFGYMYSYSERP 378 Query: 372 GTPGSNMLE----QVDENVKAERLLCLQKK---LREQQVSFNDACVGQIIEVLIEKHGKE 424 GT + LE + D+ + ++ LQ++ R QQ +G+I EVLIE K Sbjct: 379 GTMAARKLEDDVPEADKKRRLAEIIALQRQHSGYRLQQR------LGKIDEVLIEGESKR 432 Query: 425 KGK-LVGRSPWLQSVVL-NSKNHNIGDIIKVRITDVKISTLYGELV 468 + +GR+ VV + +G+ ++V+I D TL G +V Sbjct: 433 STEHWMGRNSQNAVVVFPKEEGSQVGEFVQVKIEDCTTGTLLGSIV 478 >gi|313205436|ref|YP_004044093.1| tRNA-i(6)a37 thiotransferase enzyme miab [Paludibacter propionicigenes WB4] gi|312444752|gb|ADQ81108.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paludibacter propionicigenes WB4] Length = 456 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 162/454 (35%), Positives = 256/454 (56%), Gaps = 28/454 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + G+ + + +AD I +NTC IR+ A ++V + L Sbjct: 20 KKLFIETYGCQMNVADSEVVASIMQMDGFALTDKITEADAIFVNTCSIRDNAEQRVINRL 79 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 LK ++ L+V V GC+A+ +E++ VN+VVGP Y +P L+ Sbjct: 80 KYFETLK----RKNKKLIVGVVGCMAERVKDELINEYG-VNIVVGPDAYMDIPNLIGSVE 134 Query: 145 FGKRVVDTDYSVEDKFE-----RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G + ++ D S + + R+S + ++ F++I GC+ FC++C+VPYTR Sbjct: 135 QGNKAINVDLSTTETYSDVLPTRIS---------KSISGFISIMRGCNNFCSYCIVPYTR 185 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR + ++ E + L E+TLLGQNVN++R + DGE F DLL ++E Sbjct: 186 GRERSRDVESILTELKDLQAKNYKEVTLLGQNVNSYRMEK-DGEVIEFPDLLAIVAEAAP 244 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +R R++TSHP+DMSD ++ L +HLPVQSGS++ILK MNR++T Y + I Sbjct: 245 EMRFRFSTSHPKDMSDRTLEVIAQYPNLCKSIHLPVQSGSNKILKLMNRKYTREWYLERI 304 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNM 378 IR + P+ +IS+D GF GET++D + T+ L+ ++ + AF FKYS R GT N+ Sbjct: 305 AAIRRILPEASISTDVFCGFHGETEEDHQETLSLLREVNFDLAFMFKYSERPGTFAAKNL 364 Query: 379 LEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPW 434 + + E K RL + LQ++L Q N VG+ EVL+E K K +L GR+ Sbjct: 365 PDNISEEEKLRRLAEIIDLQRELTNQG---NQRDVGKTFEVLVEGFSKRSKEQLFGRTSQ 421 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V+ IG+ I+VR+ ++L E+V Sbjct: 422 NKVVIFPRLGRRIGETIQVRVLSASSASLIAEVV 455 >gi|154509070|ref|ZP_02044712.1| hypothetical protein ACTODO_01587 [Actinomyces odontolyticus ATCC 17982] gi|153798704|gb|EDN81124.1| hypothetical protein ACTODO_01587 [Actinomyces odontolyticus ATCC 17982] Length = 512 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 160/471 (33%), Positives = 266/471 (56%), Gaps = 41/471 (8%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---------- 62 M + D +P+ + V++ GCQMN +DS RM + G V + +A Sbjct: 1 MNTMTQDGTTLPRTYAVRTLGCQMNEHDSERMAGLLEQAGLVPVEQVPEAAARATDAGDM 60 Query: 63 --DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120 D+IV+NTC +RE AA +++ LG++ ++K +R + + V GC+AQ + I+ + Sbjct: 61 GADVIVINTCSVRENAATRLFGNLGQLASVKRARPG----MQIAVGGCLAQQMRDGIVEK 116 Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179 +P V+ V G LP LL RA + V+ + S++ L +R+ A+ Sbjct: 117 APWVDAVFGTHNIDVLPALLRRAEHNRAAAVEIEESLKVFPSTLPT-----HRESAYAAW 171 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 ++I GC+ CTFC+VP+ RG E R ++ E + G E+TLLGQNVN++ G G Sbjct: 172 VSISVGCNNTCTFCIVPHLRGKERDRRPGDILAEVEAVASQGAIEVTLLGQNVNSY-GVG 230 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 GE+ F+DLL ++ ++G+ R+R+T+ HP +D +I A +MP LH+P+QSGS Sbjct: 231 F-GERGAFADLLRAVGRVEGIERVRFTSPHPAAFTDDVIAAMAQTPTVMPSLHMPLQSGS 289 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 D IL+ M R + + I++R+R+ P+ AI++D IVGFPGET++DF+AT+++V++ + Sbjct: 290 DAILRQMRRSYRRERFMGILERVRAAIPEAAITTDIIVGFPGETEEDFQATLEVVEQARF 349 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEV 416 + AF+F YSPR GTP ++ +QV ++V E RL+ LQ+++ + N A G +EV Sbjct: 350 SSAFTFLYSPRPGTPAADREDQVPDDVALERYQRLIKLQERICAED---NAALAGTEVEV 406 Query: 417 LI-EKHGKEKG---KLVGRSP-------WLQSVVLNSKNHNIGDIIKVRIT 456 L+ E G++ G ++ GR+ L + + GD+I+ +T Sbjct: 407 LVSEGDGRKDGATHRISGRARDNRLVHVALPEGMAEADRPRPGDMIRATVT 457 >gi|325289891|ref|YP_004266072.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Syntrophobotulus glycolicus DSM 8271] gi|324965292|gb|ADY56071.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Syntrophobotulus glycolicus DSM 8271] Length = 442 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 158/448 (35%), Positives = 252/448 (56%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ SYGCQM+ D+ + QGYE+ ++ ADLI++NTC +RE A K+ + Sbjct: 6 KKYLTLSYGCQMSERDAETFSSVARQQGYEKTTELEQADLIIINTCCVRESAENKIIGKI 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G+++N K + L + V GC+ Q G E++ +R+ V++ G +LL+ Sbjct: 66 GQLKNYKEKK----PSLKIAVCGCMVQQPGTAEKLSKRAAHVDIWTGTNDIGNFAQLLKS 121 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A +++ + +R I Y + + A + I GC+ +C +C+VP+ RG E Sbjct: 122 ASENSKIICVSQEAQKNGDR-EISTAEYGK---LKANVNIMYGCNNYCAYCIVPFVRGEE 177 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLV 261 SR + +E L+ G E+TLLGQNVN++ GL DG FS+LL + ++ L Sbjct: 178 RSRPKEDICEEIGVLVQGGCKEVTLLGQNVNSY---GLRDGFAYDFSNLLQEVDQLPNLD 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D+SD LIK + + ++HLP Q+GS+ IL++MNR +T Y + I Sbjct: 235 RIRFITSHPKDLSDLLIKTIAEGQKICEHIHLPFQAGSNTILRAMNRNYTREYYLERIKA 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I + P++ +++D IVGFPGET++DF T+DLV K+ ++QAF+F YS R GT ++ EQ Sbjct: 295 ILGMIPEVRLTTDIIVGFPGETEEDFEQTIDLVQKVHFSQAFTFMYSKRSGTAAASYEEQ 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 + +VK RL L + +S+ + G+ EVL+E K + L GR+ + VV Sbjct: 355 IPLDVKKRRLQRLMSIQNARSLSWREQMTGKEYEVLVEGPSKNNPEMLTGRTRGNEVVVF 414 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 G ++ VRI V TL+GELV Sbjct: 415 PGHLDLAGTLVLVRIQSVNSWTLWGELV 442 >gi|206900889|ref|YP_002250798.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dictyoglomus thermophilum H-6-12] gi|229890516|sp|B5YE40|MIAB_DICT6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|206739992|gb|ACI19050.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dictyoglomus thermophilum H-6-12] Length = 440 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 164/456 (35%), Positives = 257/456 (56%), Gaps = 36/456 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++++ +YGCQMN DS ++ + + GY M++AD+I+LNTC +RE+A EKV+ LG Sbjct: 3 KYYIITYGCQMNKSDSEKVAGILENLGYTPSEKMEEADIILLNTCSVRERAEEKVFGKLG 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +R LK K +LL+ + GC+AQ EE++ + P V+ V+G + LP++LE Sbjct: 63 ELRKLK----KRNQNLLIGIFGCMAQRMKEELIEKFPHVDFVLGSYKFTELPKILESLDG 118 Query: 146 GKRVV---------DTDYSV---EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193 K+VV D D+ V E+KF+ A++ I GC+ FCT+C Sbjct: 119 KKKVVLAEDIPSPQDVDFRVIKRENKFQ----------------AWIPIIYGCNNFCTYC 162 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 +VPY RG E SR +++ E L GV E+TLLGQNV+++ G D +DLL Sbjct: 163 IVPYLRGREKSRDPEEIIREVEYLASQGVVEVTLLGQNVDSY---GKDLGNVDLADLLVE 219 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 + I + R+R+ TSHPRD+SD LI+ + P+ HLP+Q+GSDRIL+ M R +T Sbjct: 220 IHRIPRIKRIRFLTSHPRDVSDKLIRVVATHPKVCPHWHLPLQAGSDRILRRMGRGYTYS 279 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 EY+ +I++IR+ P + S+D IVGFPGE ++DF AT +++I + YS R GT Sbjct: 280 EYKALIEKIRAEIPKASFSTDIIVGFPGEEEEDFLATRRALEEIKFDTVNLAIYSKRPGT 339 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRS 432 P +N + + K L+ R+ N + VG+ VL E+ + K +L GR+ Sbjct: 340 PAANYEDLIPYETKKRWFDELENLQRKIIYEKNLSRVGKEEIVLAEEVNPKNPRELSGRT 399 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V ++ IG + V+IT+ ++ +L GE++ Sbjct: 400 ENYRLVFFEAEKELIGKFLLVKITEARLWSLKGEVI 435 >gi|331084033|ref|ZP_08333140.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Lachnospiraceae bacterium 6_1_63FAA] gi|330402395|gb|EGG81965.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Lachnospiraceae bacterium 6_1_63FAA] Length = 491 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 162/439 (36%), Positives = 256/439 (58%), Gaps = 24/439 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + ++GCQMN DS ++ + GY V ++AD ++ NTC +RE A +VY LG + Sbjct: 59 ITTFGCQMNARDSEKLVGILERIGYVEVPD-ENADFVIYNTCTVRENANLRVYGRLGYLH 117 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +LK K+ +++ + GC+ Q E++ + VN++ G Y+ EL+ + Sbjct: 118 SLK----KKNPHMMIGLCGCMMQEPQVVEKLKKSYSFVNLIFGTHNIYKFAELVVSSLLS 173 Query: 147 KRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R++ DTD VED V+ Y K GV I GC+ FC++C+VPY RG Sbjct: 174 DRMIIDIWKDTDKIVED-----LPVERKYPFKSGVN----IMFGCNNFCSYCIVPYVRGR 224 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR+ +V E +L+ +GV E+ LLGQNVN++ GK LD E TF+ LL + +I+GL Sbjct: 225 ERSRNPKDIVREIERLVKDGVVEVMLLGQNVNSY-GKNLD-EPMTFAQLLTEIEKIEGLK 282 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D+SD LI+ + + +LHLP+QSGS IL+ MNRR+ +Y ++++ Sbjct: 283 RIRFMTSHPKDLSDELIEVMKNSKKICKHLHLPLQSGSSDILQKMNRRYDKEKYLNLVEK 342 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ PDI++++D IVGFPGET++DF T+D+V K+ Y AF+F YS R GTP + M Q Sbjct: 343 IRTAIPDISLTTDIIVGFPGETEEDFLETVDVVKKVRYDSAFTFIYSKRTGTPAAVMENQ 402 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVL 440 V E V +R L + ++ + G+++EVL+ E++ ++K + GR V Sbjct: 403 VSEGVVKDRFNRLLETVQSIGREMSARDTGKVMEVLVEEQNSQDKHLMTGRLSNNLLVHF 462 Query: 441 NSKNHNIGDIIKVRITDVK 459 IG + +VR+ + + Sbjct: 463 EGDTSLIGQLCQVRLDECR 481 >gi|296121908|ref|YP_003629686.1| RNA modification enzyme, MiaB family [Planctomyces limnophilus DSM 3776] gi|296014248|gb|ADG67487.1| RNA modification enzyme, MiaB family [Planctomyces limnophilus DSM 3776] Length = 501 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 165/466 (35%), Positives = 257/466 (55%), Gaps = 30/466 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GCQMN+ DS + +GYE + DDAD I+ NTC +RE A K+YS LG Sbjct: 29 KLYIETVGCQMNMLDSELVVAALRREGYELTSQPDDADTILFNTCSVREHAEHKIYSALG 88 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R+++ + R ++ ++ V GC+AQ + I R+P V++VVG +P L++ AR Sbjct: 89 RLKHARKQRPQQ----VIGVMGCMAQKDQSLIFDRAPHVDIVVGTGQMAEIPGLIKNARK 144 Query: 146 GK---------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 + R T V F+ + R AF+ I GCDKFCT+CVVP Sbjct: 145 DRERALAVSLDRKAGTRREVSASFQSYDPLREPEMRPSPYQAFVRIMFGCDKFCTYCVVP 204 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 TRG E SR S+++ E L GV E+TLLGQ VN+++ +G+ SDLL ++ E Sbjct: 205 MTRGPEQSRLPSEILAEVAHLAGQGVKEVTLLGQTVNSYKCVE-NGKTWRLSDLLAAMHE 263 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 G++R ++ TS+PRDM+D L+ A DL Y+H+P+Q G D +L M R +T YR Sbjct: 264 TPGMLRFKFVTSYPRDMTDDLLIALRDLPKCSHYIHVPLQHGCDDVLTRMKRGYTTAHYR 323 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++ RI+ P A+SSDFIVGF GET++ + +++ + + + +F FKYS R GT Sbjct: 324 EMHQRIKEYLPYSAVSSDFIVGFCGETEESHQKSLEAIREYRFKNSFIFKYSERPGTKAQ 383 Query: 377 NMLE-QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-------- 424 ++ + + + VK R LL LQ ++ E+ N A +G+ +EVL+E K Sbjct: 384 SLFQDDIPDEVKKRRNQELLELQNEISEED---NAAFIGREVEVLVEGPSKNAIKKADSS 440 Query: 425 -KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 K +L GR+ + VV + G + +V + DV +TL G ++ Sbjct: 441 LKEQLTGRTRCDRIVVFDGNPRLAGSLAQVVVHDVTPTTLVGSILT 486 >gi|288572815|ref|ZP_06391172.1| RNA modification enzyme, MiaB family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568556|gb|EFC90113.1| RNA modification enzyme, MiaB family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 442 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 159/445 (35%), Positives = 257/445 (57%), Gaps = 17/445 (3%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +K YGCQMNVYD ++ +G+ V D AD++V C IR+KA K++S +GR Sbjct: 4 FCIKVYGCQMNVYDGDKIRTAMILKGWREVPETD-ADVVVYVGCSIRDKAEHKIWSEMGR 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 R + +V + GC+AQ G ++++R P + ++ GP++ +P+ L RA G Sbjct: 63 YRPGWEGKKSP----IVCLVGCMAQNVGRDMMKRFPWIRMIAGPRSIGFIPDGLIRAVSG 118 Query: 147 KRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +RV +D D +F L +V R A++TI GCD FCT+C+VPY RG +S Sbjct: 119 ERVDLLDADAR---EFNDLDVVP--IKRDNPWKAYVTIAHGCDYFCTYCIVPYVRGRFMS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKGLVRL 263 R ++++E R L+D+GV EI+LLGQNV+ + G D ++ F+DLL ++E G+ + Sbjct: 174 RDSEEILEEIRALVDDGVREISLLGQNVDTY---GADFDRSYRFADLLRDVAETDGVDLV 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TS+P+D++ ++ + + P ++LP+QSGSDRILKSMNR ++ EY + + IR Sbjct: 231 RFMTSYPKDLTADVVSVMAEYPKICPGINLPIQSGSDRILKSMNRHYSIAEYTETVRIIR 290 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++ ++SD IVGFPGET++DF A+M+ V + + + YSPR GTP + M +Q+ Sbjct: 291 EGLPEVGLTSDLIVGFPGETEEDFMASMEAVRQFRFDLVHTAAYSPRAGTPAAKMEDQLP 350 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442 + K RL + + + N+A VG+ +LI+ + LV GR+ + V+ Sbjct: 351 DEEKFRRLSEINRLQSSIAMEINEATVGRRYRILIDGPAPKGDGLVQGRTMTDKVVICPG 410 Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467 + G V+I + L+GE+ Sbjct: 411 EASWAGRFADVKIVRAENWCLHGEI 435 >gi|119358129|ref|YP_912773.1| RNA modification protein [Chlorobium phaeobacteroides DSM 266] gi|229890478|sp|A1BIX2|MIAB_CHLPD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|119355478|gb|ABL66349.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chlorobium phaeobacteroides DSM 266] Length = 442 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 160/448 (35%), Positives = 249/448 (55%), Gaps = 23/448 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++ ++GCQMN DS + + +GY++ S ++A +I+LNTC +RE A E++ +L Sbjct: 6 RKFYIHTFGCQMNQADSGIITALLEKEGYQQAASEEEAGIIMLNTCAVRENAVERISHYL 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ K ++ +L+V + GC+ Q EE+ P+++ + GP TY LP L+ A Sbjct: 66 QHVKGFK----RKCPELIVGLTGCIPQYRREELFTVFPVIDFLAGPDTYRVLPALIAEAG 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + S +F DG R + + AF+ I GC+ C FCVVP+TRG E Sbjct: 122 DSR-------SARLEFNAFETYDGVRQARTQSLNAFVPIIRGCNNMCAFCVVPFTRGRER 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S V+DE R L D+G EITLLGQNVN++ + FS LL ++S R+ Sbjct: 175 SHPFESVLDEVRALADDGCREITLLGQNVNSYHDPASGAD---FSRLLDAVSREAPETRI 231 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP+DMS L++ + +LHLPVQSGS R+L MNR H EYR I+ +R Sbjct: 232 RFTTSHPKDMSHSLVETMALRPNICNHLHLPVQSGSTRMLARMNRGHDIEEYRNKIELLR 291 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQV 382 P I++S+D I GF GE++ D T++L+ ++ + F F YS R GT M + V Sbjct: 292 KWIPGISLSTDLIAGFCGESEADHDQTLELMREVRFDSVFMFYYSVRQGTLAARTMPDDV 351 Query: 383 DENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSV 438 E VK +RL + LQ + + + G ++EVL+E + +L+GR+ + V Sbjct: 352 PEEVKKQRLQEIIDLQNGISAELLGL---APGSVVEVLVESESRRSSDQLMGRTDGNRVV 408 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGE 466 V + H GD+++V IT +TL+G+ Sbjct: 409 VFDRGIHQPGDLVRVMITGSTSATLFGQ 436 >gi|313837164|gb|EFS74878.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL037PA2] gi|314927814|gb|EFS91645.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL044PA1] gi|314971937|gb|EFT16035.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL037PA3] Length = 490 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 164/443 (37%), Positives = 256/443 (57%), Gaps = 25/443 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + V +YGCQMNV+DS R+ + GY R +++ AD++V NTC +RE A ++Y Sbjct: 14 YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + ++K++ + + V GC+AQ + + ++ R+P V+VV G LP LL+RA Sbjct: 74 LGHMASVKSA----NPGMQLAVGGCMAQKDKDAVVARAPWVDVVFGTHNVGSLPALLKRA 129 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R V+ + S+ L R +A+++I GC+ CTFC+VP RG E Sbjct: 130 RHNATAQVEIEESLITFPSNLPT-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGRE 184 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R +++ E R L+D GV E+TLLGQNVN++ G+ G++ F+ LL + I GL Sbjct: 185 TDRRPGEILSEIRALVDEGVQEVTLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I+A + +MP LH+P+QSGSD +L+ M R + + ++ I+DR Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R PD AI++D IVGFPGETD DF TM +V + ++ AF+F+YS R TP M +Q Sbjct: 302 VREAIPDAAITTDIIVGFPGETDKDFAETMRVVAESKFSAAFTFQYSIRPHTPAGVMADQ 361 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRS--PWL 435 V + + ER L + + + N+A VG+ +EV+ E G++ ++ GR+ L Sbjct: 362 VPKPIVQERYERLVELVDDIAWQENEAQVGRTVEVMFAEGEGRKDEATHRVTGRACDNRL 421 Query: 436 QSVVLNSKNH--NIGDIIKVRIT 456 V LN + GDI +V IT Sbjct: 422 VHVSLNPGDDVPRPGDIGEVVIT 444 >gi|163753931|ref|ZP_02161054.1| 2-methylthioadenine synthetase [Kordia algicida OT-1] gi|161326145|gb|EDP97471.1| 2-methylthioadenine synthetase [Kordia algicida OT-1] Length = 481 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 165/461 (35%), Positives = 255/461 (55%), Gaps = 26/461 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + +G+ N +++ADL+++NTC IR+KA + V L Sbjct: 24 RKLYIESYGCQMNFADSEVVASILAKEGFNTTNRLEEADLVLVNTCSIRDKAEQTVRKRL 83 Query: 85 GRIRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + +K N ++K G V GC+A+ + L IV++VVGP Y LP L++ Sbjct: 84 EKYNAVKRHNPKMKVG------VLGCMAERLKSKFLEEEKIVDMVVGPDAYKDLPNLIQE 137 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ V+ S E+ + +S V N G+ A ++I GCD CTFCVVP+TRG E Sbjct: 138 IDDGRNAVNVVLSKEETYGDISPVRLNTN---GINALVSITRGCDNMCTFCVVPFTRGRE 194 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSD 249 SR +++E ++L D EITLLGQNV++ W G GL D +K + F+ Sbjct: 195 RSRDPQSILEEIQELSDKNFKEITLLGQNVDSYLWYGGGLKKDFDKASEMQKATAVDFAK 254 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL ++ +RLR++TS+P+DM + + + ++HLPVQSGS+RILK MNR Sbjct: 255 LLDMVATKFPKLRLRFSTSNPQDMHESVFHVMAKHRNICKHIHLPVQSGSNRILKEMNRL 314 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 HT EY +ID+I+ + P +S D I GFP ET++D + T+ L++ + Y + F YS Sbjct: 315 HTREEYFALIDKIQEILPGCGVSQDLIAGFPTETEEDHQDTLSLMEYVKYDFGYMFTYSE 374 Query: 370 RLGT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK- 427 R GT G M + V E K RL + + R+ + + + EVLIE K+ + Sbjct: 375 RPGTMAGRKMEDDVPEATKKRRLAEIIELQRKHSAFRTKSHLNTVQEVLIEGTSKKSDEH 434 Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +GR+ V +N+ GD + V+I D +TL GE + Sbjct: 435 WMGRTSRNTVTVFPKENYKPGDFVNVKIYDCTSATLIGEAI 475 >gi|219123728|ref|XP_002182171.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406132|gb|EEC46072.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 453 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 169/449 (37%), Positives = 262/449 (58%), Gaps = 12/449 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSF 83 Q + +++ GCQMNV DS R+ + ++ RV + DADL++ NTC IR+ A +K+Y Sbjct: 2 QTYHIQTSGCQMNVADSERLAGVLRNELNMRVADQSQDADLVLFNTCSIRDHAEQKLYDA 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG K K+ + ++V GCVAQ EGE +LRR P ++VV+GPQ L +LE Sbjct: 62 LGPYAAQKRKGQKQ---MALIVTGCVAQQEGEALLRRVPEIDVVLGPQYVPFLKNVLESV 118 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGI 201 G+++V T + + S D + RG V A++ I GC++ CT+CVVP TRG+ Sbjct: 119 SLGQQIVATAPMLLQEDVSGSSADWNHKPVRGHDVRAWVNIIHGCNEHCTYCVVPGTRGM 178 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKG 259 E SR++ ++ E L G E+TLLGQN++A+ G+ + K TF+DLL L+ + Sbjct: 179 EQSRTMEAILQEIIDLGRRGYKEVTLLGQNIDAY-GRDM-VPKRTFADLLTFLNFRIPQD 236 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +R+RY TSHPR SD +I A +LD + H+P Q+G D +L+ M R +T Y +II Sbjct: 237 DMRIRYVTSHPRYFSDRVIDAVANLDKVCECFHMPFQAGDDEVLRRMRRGYTYDSYMRII 296 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +IR PD AI D IVGFPGETD+ F T+ L++++ + +F YSPR T + Sbjct: 297 RKIRDKAPDAAICGDVIVGFPGETDEGFEKTLQLMEEVHFDNLNTFAYSPRPNTEAATWD 356 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438 +QV ++VKAERL +Q E + + VG+++ VL+E + + +++GR+ + V Sbjct: 357 DQVPDSVKAERLQRVQTLAAEHGLERSMRYVGRVVPVLVEDGNPRNPAQVMGRTRQGRQV 416 Query: 439 VLNSKNHNI-GDIIKVRITDVKISTLYGE 466 + + G+I+ V IT+ + +L GE Sbjct: 417 YFDGDLAALRGEIVDVHITEARTWSLMGE 445 >gi|325680283|ref|ZP_08159843.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus albus 8] gi|324107992|gb|EGC02248.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus albus 8] Length = 465 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 165/445 (37%), Positives = 254/445 (57%), Gaps = 21/445 (4%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 FV SYGCQ NV D +++ M GY+ + D A LI+LNTC +RE A ++V+ +G Sbjct: 36 FVHSYGCQQNVSDGEKIKGMLAKVGYDFTDDTDSAQLILLNTCAVRENAEDRVFGNIGNF 95 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144 + LK ++ +L++ + GC+AQ + E+I V++V G Y + +L E Sbjct: 96 KKLK----EQNRELVIGICGCMAQQKHVAEKIKASYRQVDLVFGTFAYNDMYSMLWEVIS 151 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 KR+ + + + E ++ + R+ V AFL I GC+ FCT+C+VPY RG E S Sbjct: 152 KHKRLFNQSEACTEIDESMTQL-----REDKVRAFLPIMYGCNNFCTYCIVPYVRGRERS 206 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R V+ E R L++ G EITLLGQNVN++ + F LL + +I+G R+R Sbjct: 207 RKPEAVIAEVRSLVEQGYKEITLLGQNVNSY--------EYGFPALLREIDKIEGKYRIR 258 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + +SHP+D + LI A D + + +LHLPVQ+GS+R+LK+MNRR+T +Y ++ID RS Sbjct: 259 FMSSHPKDATKELIDAIIDCEHVCTHLHLPVQAGSNRVLKAMNRRYTVEKYMEMIDYARS 318 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD + ++D IVGFPGET ++F T +++ ++ Y +SF YS R GTP + + V + Sbjct: 319 RVPDFSFTTDLIVGFPGETYEEFCETKEVIKRVKYDNIYSFVYSRRSGTPAAKFEDHVTD 378 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSK 443 K L L + RE + VG+ +EVL+E G+ +G L G++ V + + Sbjct: 379 KQKGLWLRELLLEQREITSEWFGRFVGRTVEVLVEGEGRTGEGWLTGKNDENIIVEVKAD 438 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 IG+ ++VRIT L GELV Sbjct: 439 KKYIGEFVRVRITKAMNWALSGELV 463 >gi|15643418|ref|NP_228462.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga maritima MSB8] gi|81553183|sp|Q9WZC1|MIAB_THEMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|4981175|gb|AAD35737.1|AE001738_17 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 443 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 165/448 (36%), Positives = 266/448 (59%), Gaps = 24/448 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF++K++GCQMN DS M + +G+ +S ++AD++++NTC +R K+ EK YS LG Sbjct: 2 RFYIKTFGCQMNENDSEAMAGLLVKEGFTPASSPEEADVVIINTCAVRRKSEEKAYSELG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 ++ LK + ++V VAGCVA+ E E+ L + + V+G + R+ E +++A Sbjct: 62 QVLKLKKKKK-----IVVGVAGCVAEKEREKFLEKG--ADFVLGTRAVPRVTEAVKKALE 114 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G++V + +++ L + R A++TI GCD+FCT+C+VPYTRG E SR Sbjct: 115 GEKVALFEDHLDEYTHELPRI-----RTSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSR 169 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264 ++ +++E +KL + G E+T LGQNV+A+ GK L DG + + LL S+I+G+ R+ Sbjct: 170 PMADILEEVKKLAEQGYREVTFLGQNVDAY-GKDLKDG--SSLAKLLEEASKIEGIERIW 226 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TS+P D SD LI+ + +HLPVQSGS+RILK MNRR+T EY ++++IRS Sbjct: 227 FLTSYPTDFSDELIEVIAKNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRS 286 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--- 381 P++AISSD IVGFP ET++DF T+DLV+K + + YSPR GT + Sbjct: 287 KVPEVAISSDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVP 346 Query: 382 VDENV-KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 +E V + + L+ LQK++ + N+ G+ + +++E K G GR + + Sbjct: 347 YEEKVRRMQFLMNLQKRINRK---LNERYRGKTVRIIVEAQAK-NGLFYGRDIRNKIIAF 402 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ IG V++ + LYG++V Sbjct: 403 EGEDWMIGRFADVKVEKITAGPLYGKVV 430 >gi|332299874|ref|YP_004441795.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Porphyromonas asaccharolytica DSM 20707] gi|332176937|gb|AEE12627.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Porphyromonas asaccharolytica DSM 20707] Length = 450 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 159/451 (35%), Positives = 259/451 (57%), Gaps = 19/451 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R F+++YGCQMNV DS + GY+ + +D+AD +++NTC +R+ A +++ + Sbjct: 10 KRVFIETYGCQMNVADSEIIAAQMQLAGYQLTDQIDEADAVLINTCSVRDNAEQRI---I 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R+ NL R + G +V V GC+A+ E +++ V++V GP Y LP L+ A Sbjct: 67 HRLDNLNGQRRRSGHPQIVGVLGCMAERVRETLIQDHG-VDLVAGPDAYTDLPHLIAAAE 125 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ + + S + + + V R G ++ F++I GCD FCT+C+VPYTRG E Sbjct: 126 AGEPAISIELSKSETYSDVIPV-----RLPGLHISGFVSIMRGCDNFCTYCIVPYTRGRE 180 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR +V E +++ G E+TLLGQNVN++ + G TF+DLL ++E +R Sbjct: 181 RSRDPESIVREVQRMAQEGYREVTLLGQNVNSYCWQSETGVSYTFADLLRKVAEAVPTMR 240 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP+DM D ++ + ++H P+QSGS+RIL+ M+RR+T Y + ++RI Sbjct: 241 IRFTSPHPKDMKDETLEVMSLYPNICRHIHFPLQSGSNRILERMHRRYTREWYLERVERI 300 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381 R PD +S+D GF GET++DF+ T++++ + AF FKYS R GT S ++++ Sbjct: 301 RDYMPDCGLSTDVFCGFSGETEEDFQETLEVMRQARLDSAFMFKYSERPGTYASRHLVDD 360 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 V E VK ERL + LQ +L + N+ V + EVLIE + K GR+ + Sbjct: 361 VPEEVKVERLNRMIALQNEL---SLESNERDVDKSFEVLIEGYSKRSHDDFFGRTQQNKV 417 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V ++ IG ++ VR+ V +T+ G V Sbjct: 418 IVFPKGHNQIGKLVTVRVERVTSATMIGSEV 448 >gi|328907278|gb|EGG27044.1| RNA modification enzyme, MiaB family [Propionibacterium sp. P08] Length = 493 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 164/443 (37%), Positives = 256/443 (57%), Gaps = 25/443 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + V +YGCQMNV+DS R+ + GY R +++ AD++V NTC +RE A ++Y Sbjct: 17 YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 76 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + ++K++ + + V GC+AQ + + ++ R+P V+VV G LP LL+RA Sbjct: 77 LGHMASVKSA----NPGMQLAVGGCMAQKDKDAVVARAPWVDVVFGTHNVGSLPALLKRA 132 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R V+ + S+ L R +A+++I GC+ CTFC+VP RG E Sbjct: 133 RHNATAQVEIEESLITFPSNLPT-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGRE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R +++ E R L+D GV E+TLLGQNVN++ G+ G++ F+ LL + I GL Sbjct: 188 TDRRPGEILSEIRALVDEGVQEVTLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 244 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I+A + +MP LH+P+QSGSD +L+ M R + + ++ I+DR Sbjct: 245 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 304 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R PD AI++D IVGFPGETD DF TM +V + ++ AF+F+YS R TP M +Q Sbjct: 305 VREAIPDAAITTDIIVGFPGETDKDFAETMRVVAESKFSAAFTFQYSIRPHTPAGVMADQ 364 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE---KGKLVGRS--PWL 435 V + + ER L + + + N+A VG+ +EV+ E G++ ++ GR+ L Sbjct: 365 VPKPIVQERYERLVELVDDIAWQENEAQVGRTVEVMFAEGEGRKDEATHRVTGRACDNRL 424 Query: 436 QSVVLNSKNH--NIGDIIKVRIT 456 V LN + GDI +V IT Sbjct: 425 VHVSLNPGDDVPRPGDIGEVVIT 447 >gi|163814091|ref|ZP_02205483.1| hypothetical protein COPEUT_00244 [Coprococcus eutactus ATCC 27759] gi|158450540|gb|EDP27535.1| hypothetical protein COPEUT_00244 [Coprococcus eutactus ATCC 27759] Length = 483 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 168/444 (37%), Positives = 253/444 (56%), Gaps = 16/444 (3%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 ++++GCQMNV DS ++ + GY R S + AD I+ NTC +RE A KVY LG ++ Sbjct: 51 IQTFGCQMNVRDSEKLAGILEQMGYVRTES-EHADFIIYNTCTVRENANRKVYGHLGLMK 109 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPEL-LERARF 145 +LK ++ ++ + + GC+ Q + E I + V++V G Y+L E+ + R Sbjct: 110 HLK----EKNPEMKIALCGCMMQEQHVVEIISKSYRFVDMVFGTHNVYKLAEIFVNRIES 165 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G V+D ++ E L V R+ + + I GC+ FCT+C+VPY RG E SR Sbjct: 166 GSMVIDIWKDAKEVVEDLPAV-----REFPFKSGVNIMFGCNNFCTYCIVPYVRGRERSR 220 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + ++ E +L D+GV EI LLGQNVN++ GK L+ TF++LL + I+ + R+R+ Sbjct: 221 NPEDIIAECERLADDGVVEIMLLGQNVNSY-GKNLE-HPITFAELLRRICTIEKIQRVRF 278 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TSHP+D+SD LI D + +LHLPVQSGS +IL +MNRR+T Y ++DRIR+ Sbjct: 279 MTSHPKDLSDELIDVIADNPKVCRHLHLPVQSGSTKILNAMNRRYTKESYLALVDRIRTK 338 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+I++++D IVGFPGET++DF TMD+V+K+ Y AF+F YS R GTP + M + Sbjct: 339 VPEISLTTDIIVGFPGETEEDFLETMDVVEKVQYDTAFTFIYSKRTGTPAAGMENGSTKE 398 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKN 444 +R L ++++E A GQ VL+E K G L GR V Sbjct: 399 EIQDRYNRLLRRVQEISDVKTLAIKGQTQPVLVEGFDEKGDGLLTGRLSNNILVHFPGCA 458 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 +G I+ V++ + K GEL Sbjct: 459 EMVGKILNVKLVECKGFYYMGELA 482 >gi|116327643|ref|YP_797363.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330557|ref|YP_800275.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281687|sp|Q04UA3|MIAB_LEPBJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|122284560|sp|Q053R5|MIAB_LEPBL RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|116120387|gb|ABJ78430.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124246|gb|ABJ75517.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 449 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 159/451 (35%), Positives = 254/451 (56%), Gaps = 28/451 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGCQMN YDS + + Y +++D+I LNTC IRE A K+Y+ L Sbjct: 12 KVYIETYGCQMNEYDSGIVSSLMKDAEYSSSPDPENSDIIFLNTCAIRENAHAKIYNRLQ 71 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + LK K +L++ V GC+AQ G+++ + +++VVGP Y LPEL++R R Sbjct: 72 SLGYLK----KRNPELVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRS 127 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRK-RGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ + + ++ D R G+ AF+TI GC+ FCTFCVVPYTRG E S Sbjct: 128 GEHSISLT-----RLSKIETYDEIEPRVVNGIQAFVTIMRGCNNFCTFCVVPYTRGRERS 182 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +V E + L + G+ ++TLLGQNVN+++ +G D F+ L+ L + + R+R Sbjct: 183 RDPKSIVREIQDLTEKGIRQVTLLGQNVNSYKEQGTD-----FAGLIQMLLDETTIERIR 237 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP+D L++ P +HLP+Q+G+ R+L+ M R ++ E+ ++ IR+ Sbjct: 238 FTSPHPKDFPVRLLRLMAQNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVREIRN 297 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVD 383 + PD+ I++D IVGFP ET+++F T+ +V ++ + AF FKYS R GT L + V Sbjct: 298 IVPDVGITTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMARKKLPDNVS 357 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439 E K+ R L+ LQ + +Q N A +G++ +LIE ++ K L GR+P + V Sbjct: 358 EETKSARLTKLVDLQTSISHEQ---NRARIGRVYSILIENTSRKSEKQLCGRTPCGRMTV 414 Query: 440 L-----NSKNHNIGDIIKVRITDVKISTLYG 465 S + IG + VRI +TL G Sbjct: 415 FPLPEGRSASEMIGSTVSVRIESATSATLKG 445 >gi|291563253|emb|CBL42069.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [butyrate-producing bacterium SS3/4] Length = 476 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 164/450 (36%), Positives = 258/450 (57%), Gaps = 18/450 (4%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P F+ ++GCQMN DS ++ + GYE + +++D ++ NTC +RE A KVY Sbjct: 39 PLTCFINTFGCQMNARDSEKLLGILKEAGYEE-GTDENSDFVLYNTCTVRENANLKVYGR 97 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE---EILRRSPIVNVVVGPQTYYRLPELL 140 LG + +K ++ D+++ + GC+ Q E E +I + V+++ G ++L ELL Sbjct: 98 LGYLSGVK----RKNPDMMIALCGCMMQ-EPEVVAKIKKSYRHVDLIFGTHNIFKLAELL 152 Query: 141 -ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 ER K VVD + E L I RK + + I GC+ FC++C+VPY R Sbjct: 153 YERFMEKKMVVDVWEGTNEIVEELPI-----ERKYPFKSGVNIMFGCNNFCSYCIVPYVR 207 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR ++ E L+ +GV E+ LLGQNVN++ GK L+ + TF++LL + +I+G Sbjct: 208 GRERSREPEDIIKEIEGLVADGVVEVMLLGQNVNSY-GKNLE-QPITFAELLRRVEKIEG 265 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+ TSHP+D+SD LI+ + + +LHLP+QSGS ILK MNR+++ +Y ++ Sbjct: 266 LERIRFMTSHPKDLSDELIETMKNSKKICSHLHLPLQSGSSEILKRMNRKYSKEQYLALV 325 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +++R+ PDI++++D IVGFPGET++DF TMD+V K+ Y AF+F YS R GTP + M Sbjct: 326 EKLRAAMPDISLTTDIIVGFPGETEEDFEETMDVVRKVRYDSAFTFIYSKRTGTPAAAMP 385 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438 Q+ E+V +R L K++++ G + +VL+E+ E + GR V Sbjct: 386 NQIPEDVVKDRFDRLLKEVQDIASEVVKRHEGTVQKVLVEEIDTHEDSFVTGRLSNNTVV 445 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG I+ V + + K G LV Sbjct: 446 HFAGDASLIGKIVDVSLDEAKGFYYMGSLV 475 >gi|160939143|ref|ZP_02086494.1| hypothetical protein CLOBOL_04037 [Clostridium bolteae ATCC BAA-613] gi|158438106|gb|EDP15866.1| hypothetical protein CLOBOL_04037 [Clostridium bolteae ATCC BAA-613] Length = 502 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 167/445 (37%), Positives = 253/445 (56%), Gaps = 26/445 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + ++GCQMN DS ++ + + GY+ V S + AD ++ NTC +RE A +VY LG++ Sbjct: 56 INTFGCQMNARDSEKLLGILETIGYQAVES-EKADFVLFNTCTVRENANLRVYGRLGQLG 114 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPEL----LER 142 K K D+++ + GC+ Q E E+I + V+++ G ++L EL LER Sbjct: 115 AYK----KTHPDMMIALCGCMMQEEEVVEKIRKSYRYVDLIFGTHNIFKLAELVSLCLER 170 Query: 143 ARFG-------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 G K VVD + E L + RK + + I GC+ FC++C+V Sbjct: 171 RTQGGQKQGKTKMVVDVWKDTDQIVEDLPV-----ERKFPFKSGVNIMFGCNNFCSYCIV 225 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PY RG E SR +++ E +KL +GV EI LLGQNVN++ GK LD TF+ LL + Sbjct: 226 PYVRGRERSRRPEEIIKEIQKLAADGVVEIMLLGQNVNSY-GKNLDN-PMTFAQLLEEVE 283 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 +I G+ R+R+ TSHP+D+SD LI+ + + +LHLP+QSGS RILK MNRR+T +Y Sbjct: 284 KIDGIERIRFMTSHPKDLSDELIEVMARSEKICRHLHLPLQSGSSRILKVMNRRYTKEQY 343 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + +RI+ P I++++D IVGFPGETD+DF TMD+V ++G+ AF+F YS R GTP Sbjct: 344 LDLAERIKKAVPGISLTTDIIVGFPGETDEDFEETMDVVRRVGFDSAFTFIYSKRTGTPA 403 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 + M +QV E + ER L K++++ V + EVL+E+ + G + GR Sbjct: 404 AAMEDQVPEAIVKERFDRLLKEVQDISAEVCGRDVRTVQEVLVEEVNDHAPGLMTGRLSN 463 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVK 459 V IG ++ V + + K Sbjct: 464 NTVVHFPGDASMIGRLVPVYLQESK 488 >gi|78777940|ref|YP_394255.1| tRNA-i(6)A37 modification enzyme MiaB [Sulfurimonas denitrificans DSM 1251] gi|123768587|sp|Q30PR1|MIAB_SULDN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|78498480|gb|ABB45020.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurimonas denitrificans DSM 1251] Length = 435 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 165/449 (36%), Positives = 253/449 (56%), Gaps = 24/449 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MN DS M ++ +GYE N + ADLI++NTC +REK K++S Sbjct: 5 KKLFIETLGCAMNSRDSEHMIAELSEKEGYETTNDLSSADLIIINTCSVREKPVAKLFSE 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + N R KEG + V GC A GEEI++R+P V+ V+G + ++ E+L + Sbjct: 65 LG----VFNKRKKEGAK--IGVCGCTASHLGEEIIKRAPYVSFVLGARNVSKISEVLHKE 118 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYN--RKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R + +D +Y E +F +N R A++ I GCDK CT+C+VP TRG Sbjct: 119 RAVE--IDINYD-ESEF--------AFNDFRTSPYKAYINISIGCDKSCTYCIVPKTRGE 167 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKG 259 EIS ++ EA+K + G EI LLGQNVN + G+ GE K +FS+LL LS+I Sbjct: 168 EISIPTELILREAQKAVKGGAKEIFLLGQNVNNY-GRRFSGEHEKVSFSELLRRLSKIDA 226 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+T+ HP M D I+ + +H+P+QSGS ++LK M R +T + + Sbjct: 227 LERIRFTSPHPFHMDDEFIEEFSSNPKICKSMHMPLQSGSSKVLKDMKRGYTKEWFLNRV 286 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R++ PD++IS+D IV FPGE+D+DF T+ ++ ++ + Q FSFKYSPR T + Sbjct: 287 QKLRAMSPDVSISTDIIVAFPGESDEDFEETLSIMREVKFDQIFSFKYSPRPETEAEHFT 346 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 VDE+V + RL LQ N +G+I V E ++ GRS + Sbjct: 347 NIVDEDVASSRLTTLQNLAVNILDEKNKTHLGKIYRVYFEDLNQDY-YASGRSDNNLLIK 405 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + +G+ V+ITD+ + L GE+V Sbjct: 406 VKGSDELLGEFRDVKITDIGRTILSGEIV 434 >gi|302832307|ref|XP_002947718.1| hypothetical protein VOLCADRAFT_57473 [Volvox carteri f. nagariensis] gi|300267066|gb|EFJ51251.1| hypothetical protein VOLCADRAFT_57473 [Volvox carteri f. nagariensis] Length = 453 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 167/446 (37%), Positives = 249/446 (55%), Gaps = 23/446 (5%) Query: 35 QMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 QMN+ DS RM + + GYE AD+++ NTC IREKA +KVYS LG+ K R Sbjct: 1 QMNMADSERMAGVLEAVGYECSQDASQADVLIYNTCSIREKAEQKVYSALGKQAKRKRDR 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154 + GDL +VVAGCVAQ EG+ +LRR P +++V+GPQ R+ +LL++A + Sbjct: 61 V---GDLKIVVAGCVAQQEGQTLLRRVPELDIVMGPQFANRIHDLLDQANDAQVCATEQV 117 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 +VE+ R+ +TA++ + GC++ CT+CVVPYTRG E SR + E Sbjct: 118 AVEEDITTP-------RRESNITAWVNVIYGCNEKCTYCVVPYTRGAEQSRRPDDIRREM 170 Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDG--------EKCTFSDLLYSLSEIKGLVRLRYT 266 L + G E+TLLGQN++A+ G+ L G TF+DLL + ++ G+ R+R+ Sbjct: 171 LALGEAGYKEVTLLGQNIDAY-GRDLPGLAADASGRRAWTFTDLLRHVHDVPGIERIRFA 229 Query: 267 TSHPRDMSDC--LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 TSHPR + L++A +L L + H+P QSG + IL+ M R +T YR IID IR Sbjct: 230 TSHPRYFTGKHRLVRACAELPKLCEFFHIPFQSGDNDILREMKRGYTHERYRAIIDNIRR 289 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD +IS D IVGFPGET++ + AT LV ++G+ + + YSPR TP + QV + Sbjct: 290 YMPDASISGDAIVGFPGETEEQYLATERLVREVGFDRVNTAAYSPRPNTPAAEWDNQVAD 349 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSK 443 +K +RL L K + + G+ +EVL+E + K + GR + V + Sbjct: 350 LIKQDRLNRLNKVVMDVATERAQRFQGRTLEVLVEGPNPKNPRQAFGRIRHNKLVYFDGD 409 Query: 444 NHNI-GDIIKVRITDVKISTLYGELV 468 + + G ++ RI +L+G L Sbjct: 410 GNELRGKLVLARIDQCNAFSLFGTLT 435 >gi|239906359|ref|YP_002953100.1| tRNA-i(6)A37 modification enzyme MiaB family protein [Desulfovibrio magneticus RS-1] gi|239796225|dbj|BAH75214.1| tRNA-i(6)A37 modification enzyme MiaB family protein [Desulfovibrio magneticus RS-1] Length = 446 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 170/460 (36%), Positives = 248/460 (53%), Gaps = 40/460 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F V + GCQMNV D + + G+ + + A+ +L TC +R+K +KV S +G Sbjct: 2 KFHVTTMGCQMNVGDGDWLARSLIAAGFTQAPEAE-AECFILFTCSVRDKPEQKVVSEIG 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ----------TYYR 135 RI + R + + + V GC AQ G + RR P+V +V G Sbjct: 61 RIAD----RNRHNPNAFIAVGGCTAQQLGTTLWRRFPMVRLVFGTDGIAAAPRALARLAE 116 Query: 136 LPEL-LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 P+L L F + + D S D K AF++I +GCD +C +C+ Sbjct: 117 EPQLRLSLLDFSEAYPERDQSWPDD-------------KLPPKAFVSIMQGCDNYCAYCI 163 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLY 252 VP+ RG + SR L V+ E + L GV E+TLLGQNVN++ GLD G+ +F+ LL Sbjct: 164 VPFVRGRQKSRPLPSVIAECQSLASRGVREVTLLGQNVNSY---GLDDAGDGASFAKLLD 220 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +++ + G+ R+R+TTSHP+D+SD +I+ L L P LHLPVQSGSD IL+ M RR+ Sbjct: 221 AVAAVPGIERIRFTTSHPKDLSDEVIERFAALPQLCPALHLPVQSGSDDILRRMGRRYDT 280 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 Y +++++R PDIA++SDFIVGFPGET DF AT++LV K+G+ FSF YS R G Sbjct: 281 AAYLTLVEKLRRACPDIALTSDFIVGFPGETRADFEATLELVRKVGFDSGFSFMYSDRPG 340 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL---- 428 T + ++ K+ RL LQ L E+ + A +G+ VLIE + +G L Sbjct: 341 TASEKLAPKILPEEKSARLAELQALLDERLAASLAARLGRREVVLIEGESRREGTLGATW 400 Query: 429 VGRSPW--LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 GR P + +V L + G + VRI K +L GE Sbjct: 401 RGRDPGGRVVNVPLPAGADYAGRFVAVRIVQAKKHSLVGE 440 >gi|149194207|ref|ZP_01871305.1| tRNA-i(6)A37 modification enzyme MiaB [Caminibacter mediatlanticus TB-2] gi|149136160|gb|EDM24638.1| tRNA-i(6)A37 modification enzyme MiaB [Caminibacter mediatlanticus TB-2] Length = 422 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 163/451 (36%), Positives = 254/451 (56%), Gaps = 37/451 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++++GCQMNV DS + S Y + +ADLI+LNTC +REK +K++S L Sbjct: 2 KKLYIETFGCQMNVKDSEHI-IAELSDFYGTTQNPKEADLIILNTCSVREKPVQKLFSEL 60 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++ + N K G V GC A GEEI++++P V+ V+G + R+ E++ + + Sbjct: 61 GALKKI-NPNAKFG------VCGCTASHMGEEIIKKAPYVSFVLGARNVSRIKEVINKEK 113 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGY----NRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + D DY D Y RK F+ I GCDK CTFC+VP TRG Sbjct: 114 --AVITDIDYD-----------DTTYVFKNTRKNPYKDFVNIMVGCDKKCTFCIVPKTRG 160 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKG 259 EIS + ++ + L +GV EITLLGQNVN + + + K F+DLL +S+I G Sbjct: 161 KEISIPMDLILKQVENLAKDGVKEITLLGQNVNNYGKRFSVPHSKVDFTDLLREVSKIDG 220 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+T+ HP D + + + ++H P+QSGS +IL+SM R Y+ + Sbjct: 221 VERIRFTSPHPLHADDKFLDEFANNPKICKHIHFPLQSGSSKILQSMKR---GYDKEWFL 277 Query: 320 DRIRSVR--PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +R +R PD+AIS+D IVGFPGE+++DF+ T+D+V+K+ + Q FSF YSPR T +N Sbjct: 278 NRCEIIRQIPDVAISTDIIVGFPGESEEDFKDTLDVVEKVKFEQIFSFVYSPRPLTEAAN 337 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 QVD+ V +RL LQ+ E + +G+I +VL+E+ G +G+S + Sbjct: 338 YPNQVDKEVAKKRLWKLQELHAEILEEVSKKQIGKIYKVLVEEEG------MGKSDNFFT 391 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V L+ +G I+ V+I TL G+++ Sbjct: 392 VKLDKDPTLLGKIVDVKIHKANKHTLKGQVI 422 >gi|24213805|ref|NP_711286.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira interrogans serovar Lai str. 56601] gi|45658409|ref|YP_002495.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|81406958|sp|Q72PA4|MIAB_LEPIC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|81470597|sp|Q8F743|MIAB_LEPIN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|24194637|gb|AAN48304.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai str. 56601] gi|45601652|gb|AAS71132.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 449 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 158/455 (34%), Positives = 256/455 (56%), Gaps = 28/455 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGCQMN YDS + + Y + +++D+I LNTC IRE A K+Y+ L Sbjct: 12 KVYIETYGCQMNEYDSGIVSSLMRDAEYSTSSDPENSDIIFLNTCAIRENAHAKIYNRLQ 71 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + LK K +L++ V GC+AQ G+++ + +++VVGP Y LPEL++R R Sbjct: 72 SLGYLK----KRNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRK 127 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRK-RGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ + + ++ D R G+ AF+TI GC+ FCTFCVVPYTRG E S Sbjct: 128 GENSISLT-----RLSKIETYDEIEPRVVNGIQAFVTIMRGCNNFCTFCVVPYTRGRERS 182 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +V E + L+ G+ +ITLLGQNVN+++ + D F+ L+ L + + R+R Sbjct: 183 RDPKSIVREVQDLVQKGIRQITLLGQNVNSYKEQDTD-----FAGLIQMLLDETSIERIR 237 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP+D L++ + P +HLP+Q+G+ R+L+ M R ++ E+ ++ IR+ Sbjct: 238 FTSPHPKDFPTHLLQLMSENPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRN 297 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVD 383 + PD+ I++D IVGFP ET+++F T+ +V ++ + AF FKYS R GT L + V Sbjct: 298 IVPDVGITTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMAQRKLPDNVP 357 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439 E VK+ R L+ LQ + +Q N A +G++ +LIE K + +L GR+P + V Sbjct: 358 EEVKSARLTKLVDLQTSISHEQ---NRARIGRVYSILIENISRKSEKQLCGRTPCGRMTV 414 Query: 440 LNSKNHN-----IGDIIKVRITDVKISTLYGELVV 469 IG + V+I +TL G ++ Sbjct: 415 FPLPQETNVSGMIGSTVSVQIESATSATLKGRILA 449 >gi|325263898|ref|ZP_08130631.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. D5] gi|324030936|gb|EGB92218.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. D5] Length = 481 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 165/452 (36%), Positives = 261/452 (57%), Gaps = 21/452 (4%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P F V ++GCQMN DS ++ + GY+ + AD ++ NTC +RE A ++VY Sbjct: 44 PLTFCVVTFGCQMNARDSEKLVGILEQIGYQEETDEEKADFVIYNTCTVRENANQRVYGR 103 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLE 141 LG++ +K K+ +L+ + GC+ Q E E L++S V+++ G Y+ EL+ Sbjct: 104 LGQLNRVK----KKNPHMLIGLCGCMMQEPEVVEKLKKSYRFVDLIFGTHNIYKFAELIT 159 Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R G+ V+D + DK + D RK + + I GC+ FC++C+VPY RG Sbjct: 160 TRLESGRMVIDI-WKDTDKI----VEDLPAERKYAFKSGVNIMFGCNNFCSYCIVPYVRG 214 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR+ ++ E +L+ +GV E+ LLGQNVN++ GK L+ + +F+ LL + +I+GL Sbjct: 215 RERSRNPLDIIREIEELVADGVIEVMLLGQNVNSY-GKTLE-QPMSFAQLLQEIEKIEGL 272 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHP+D+SD LI+ G + + +LHLP+QSGS RIL+ MNRR+T Y +++ Sbjct: 273 RRIRFMTSHPKDLSDELIEVMGRSEKICRHLHLPIQSGSSRILEKMNRRYTKEHYLELVG 332 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +IR+ PDI++++D IVGFPGET++DF+ T+D+V K+ Y AF+F YS R GTP + M + Sbjct: 333 KIRASVPDISLTTDIIVGFPGETEEDFQETLDIVRKVRYDSAFTFIYSKRTGTPAAVMED 392 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDAC---VGQIIEVLIEKHGKEKGKLV-GRSPWLQ 436 QV E+V +R + L+E Q + C +VL+E LV GR Sbjct: 393 QVPEDVVKDR---FDRLLKEVQSISGEVCSVYTDTTQDVLVETINDHDPALVTGRMSNNL 449 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V +G I+ V + + + GE++ Sbjct: 450 LVHFPGDESLVGKIVSVHLKECRGFYYIGEML 481 >gi|293192300|ref|ZP_06609411.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces odontolyticus F0309] gi|292820215|gb|EFF79209.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Actinomyces odontolyticus F0309] Length = 512 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 151/424 (35%), Positives = 248/424 (58%), Gaps = 30/424 (7%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---------- 62 M + D +P+ + V++ GCQMN +DS RM + G V + +A Sbjct: 1 MNTMTQDGTALPRTYAVRTLGCQMNEHDSERMAGLLEQAGLIPVEQVPEAAARATDAGDM 60 Query: 63 --DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120 D+IV+NTC +RE AA +++ LG++ ++K +R + + V GC+AQ + I+++ Sbjct: 61 GADVIVINTCSVRENAATRLFGNLGQLASVKRARPG----MQIAVGGCLAQQMRDGIVQK 116 Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179 +P V+ V G LP LL RA + V+ + S++ L +R+ A+ Sbjct: 117 APWVDAVFGTHNIDVLPALLRRAEHNRAAAVEIEESLKVFPSTLPT-----HRESAYAAW 171 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 ++I GC+ CTFC+VP+ RG E R ++ E + G E+TLLGQNVN++ G G Sbjct: 172 VSISVGCNNTCTFCIVPHLRGKERDRRPGDILAEVEAVASQGAIEVTLLGQNVNSY-GVG 230 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 GE+ F+DLL ++ ++G+ R+R+T+ HP +D +I A +MP LH+P+QSGS Sbjct: 231 F-GERGAFADLLRAVGRVEGIERVRFTSPHPAAFTDDVIAAMAQTPTVMPSLHMPLQSGS 289 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 D IL+ M R + + I++R+R+ P+ AI++D IVGFPGET++DF+AT+D+V++ + Sbjct: 290 DAILRQMRRSYRRERFMGILERVRAAIPEAAITTDIIVGFPGETEEDFQATLDVVEQARF 349 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEV 416 + AF+F YSPR GTP ++ +QV ++V E RL+ LQ+++ + N A G +EV Sbjct: 350 SSAFTFLYSPRPGTPAADREDQVPDDVALERYQRLVKLQERICAED---NAALAGTEVEV 406 Query: 417 LIEK 420 L+ + Sbjct: 407 LVSE 410 >gi|331091143|ref|ZP_08339985.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Lachnospiraceae bacterium 2_1_46FAA] gi|330405365|gb|EGG84901.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Lachnospiraceae bacterium 2_1_46FAA] Length = 485 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 165/441 (37%), Positives = 250/441 (56%), Gaps = 23/441 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F V ++GCQMN DS ++ + GY + AD I+ NTC +RE A +VY LG+ Sbjct: 50 FCVTTFGCQMNARDSEKLVGILEQIGYAEETDEEKADFIIYNTCTVRENANMRVYGRLGQ 109 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLERAR 144 ++ +K KE +++ + GC+ Q E E L++S V+++ G Y+ EL+ Sbjct: 110 LKRVK----KENPHMMIGLCGCMMQEPEVVEKLKKSYRFVDLIFGTHNIYKFAELIVTRF 165 Query: 145 FGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 +R+V DTD VED RK + + I GC+ FC++C+VPY R Sbjct: 166 ESERMVIDIWKDTDKIVEDL---------PSERKFSFKSGVNIMFGCNNFCSYCIVPYVR 216 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR+ +V E +L+ +GV E+ LLGQNVN++ GK L+ TF+ LL + +I G Sbjct: 217 GRERSRNPKDIVREIERLVADGVVEVMLLGQNVNSY-GKNLET-PMTFAQLLQEVEKIDG 274 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+ TSHP+D+SD LI+ + + +LHLPVQSGS RIL+ MNRR+T +Y +++ Sbjct: 275 LKRIRFMTSHPKDLSDDLIEVMKNSKKICKHLHLPVQSGSSRILQKMNRRYTKEQYLELV 334 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +I++ PDI++++D IVGFPGET++DF TMD+V ++ Y AF+F YS R GTP + M Sbjct: 335 RKIKTAIPDISLTTDIIVGFPGETEEDFLETMDVVKQVRYDSAFTFIYSKRTGTPAATME 394 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSV 438 Q+ ++V +R L K+++ G EVL+E LV GR V Sbjct: 395 NQIADDVVKDRFDRLLKEVQGISTEVCGVHTGTTQEVLVESLNDHDDSLVTGRLSNNILV 454 Query: 439 VLNSKNHNIGDIIKVRITDVK 459 IG I+ V++ + K Sbjct: 455 HFPGDEDLIGKIVDVKLEECK 475 >gi|297624625|ref|YP_003706059.1| RNA modification enzyme, MiaB family [Truepera radiovictrix DSM 17093] gi|297165805|gb|ADI15516.1| RNA modification enzyme, MiaB family [Truepera radiovictrix DSM 17093] Length = 444 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 166/437 (37%), Positives = 254/437 (58%), Gaps = 13/437 (2%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GCQMN YD+ + + G++ V++ DA+LI+LNTC +R K EKV S LG R Sbjct: 5 VITHGCQMNEYDTHTILSELVAGGHQIVDTPADAELIILNTCAVRGKPVEKVISLLGEFR 64 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 K + G DL V + GC+AQ E + L + V+++VGP + ++L+ + Sbjct: 65 KQKLA----GRDLTVGMMGCLAQLEEGQALAKKFGVDILVGPGA---ITDILKAIEAVET 117 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ +S++ K + S + N +T FLTI GC+ CT+C+VP TRG E+SRSL Sbjct: 118 RGESFWSLDFKDDLHSYLTPPPNT---LTGFLTIMRGCNHHCTYCIVPQTRGPEVSRSLE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++ EAR + GV EI LLGQNVN++ G G + +F++LL L G+ R+++TTS Sbjct: 175 SIMHEARAMQAAGVQEIYLLGQNVNSY-GLGRP-DLPSFAELL-RLVAATGIPRVKFTTS 231 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 HP + + +I A + D + Y+HLPVQSGSDR+L+ M R + Y +II I++ PD Sbjct: 232 HPMNFTSDVIDAMAECDNVCKYIHLPVQSGSDRVLRRMAREYRRARYLEIIAEIKAKIPD 291 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + IS+D IVGFPGET++DF AT+ L D++G+ A+ F YS R GTP + + VK Sbjct: 292 VVISTDIIVGFPGETEEDFEATLTLYDEVGFDHAYMFMYSARPGTPSYKHFKDLPREVKT 351 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 ERL L ++ + N VG+ + VL+++ + LVG S +V++ + Sbjct: 352 ERLGRLIERQKYWSNRRNARWVGRNLRVLVKEVATDGQYLVGHSDQNHTVLVPKEQVRTL 411 Query: 449 DIIKVRITDVKISTLYG 465 + +VRI TLYG Sbjct: 412 GLHEVRIDSATPHTLYG 428 >gi|229824790|ref|ZP_04450859.1| hypothetical protein GCWU000182_00139 [Abiotrophia defectiva ATCC 49176] gi|229791119|gb|EEP27233.1| hypothetical protein GCWU000182_00139 [Abiotrophia defectiva ATCC 49176] Length = 515 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 168/467 (35%), Positives = 261/467 (55%), Gaps = 34/467 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-DLIVLNTCHIREKAAEKVYSFLG 85 F ++GCQMN DS ++ + G+E N+ D + D ++LNTC IRE A +KVY LG Sbjct: 56 FNCNTFGCQMNFRDSEKIAGILEKIGFE--NTEDKSPDFVILNTCTIRENADQKVYGNLG 113 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERA 143 ++ LK ++++ + GC+ Q +++ ++++ G Y+L EL+ A Sbjct: 114 YLKKLKEL----NPNMIIALCGCMMQETTVVQKLRESYSFIDLIYGTHNIYKLAELV-FA 168 Query: 144 RFGKRVVDTDYSVED----KFERLSIVDGGYN-----------RKRGVTAFLTIQEGCDK 188 F + + V+ K + +VD + RK A + I GCD Sbjct: 169 MFALKSYAAHHPVKKNGKYKIKHSMLVDIWKDTDKIVEDLPDERKYSFKASVNITYGCDN 228 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---C 245 FCT+C+VPY RG E SR +V E + L D GV EI LLGQNVN++ GKGL+GEK Sbjct: 229 FCTYCIVPYVRGRERSRRPGDIVKEVKCLADAGVIEIMLLGQNVNSY-GKGLEGEKGEPV 287 Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 TF++LL + +++G+ R+R+ T HP+D SD LI+ D + + ++HLP Q+GS+ +L+ Sbjct: 288 TFANLLRMVEKVEGIKRIRFMTPHPKDFSDELIEVIADSEKICKHIHLPFQAGSNNVLRR 347 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 MNRR+T Y ++ +I++ PDIA+++D IVGFPGET++DF T+D+V ++ Y A+ F Sbjct: 348 MNRRYTKESYLELAGKIKTRIPDIALTTDIIVGFPGETEEDFEDTLDVVKEVRYQSAYMF 407 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 +YS R GTP + M +QVD R LQ + E VG + EVL E+ E+ Sbjct: 408 EYSKRTGTPAATMEDQVDAEAVKRRFKRLQDTVAEYADDKFGNKVGCMAEVLAEEVNSEE 467 Query: 426 -----GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 G++ + V ++K IG ++KV+IT+ L GEL Sbjct: 468 PLIITGRMSDNTLVHFKVPTDNKEDYIGKLLKVKITENCRFYLMGEL 514 >gi|157364247|ref|YP_001471014.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga lettingae TMO] gi|229891012|sp|A8F716|MIAB_THELT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|157314851|gb|ABV33950.1| RNA modification enzyme, MiaB family [Thermotoga lettingae TMO] Length = 436 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 170/450 (37%), Positives = 265/450 (58%), Gaps = 29/450 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R F K+YGCQMN+ D+ M + GYE VN ++AD+++LNTC +R+K+ EK +S LG Sbjct: 2 RVFFKTYGCQMNLNDTETMAGILSQHGYEVVNLPEEADIVILNTCVVRQKSQEKYHSALG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + LK S G L+ +AGC + EGEE+++ + V+G ++ ++ E+L++A Sbjct: 62 QFVKLKKS----GKIKLIGIAGCGSNLEGEELIKSG--ADFVIGSRSIGKIAEVLQKAAR 115 Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+++V D +V+ K R+ R A++TI GC++FCT+C+VPYTRG E Sbjct: 116 GEKIVYLEDDICTVDSKTPRM--------RFSKHHAWITIIHGCNRFCTYCIVPYTRGRE 167 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLV 261 SR L V+ E KL NGV EIT LGQNV+A+ GK L DG + L+ + + + Sbjct: 168 KSRPLPDVLLEVEKLAKNGVKEITFLGQNVDAY-GKDLKDG--TNLASLIEQAGKFEQIK 224 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+ + TS+P D++D LI+ + H+PVQSGS+RIL+ MNRR+ ++ Q++++ Sbjct: 225 RIWFLTSYPTDITDKLIETVAEDPKAAKSFHIPVQSGSNRILRLMNRRYDRDQFLQLVEK 284 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-E 380 IRS P +ISSD IVGFP ET+ D+ TMDLV K + + YSPR GT S + Sbjct: 285 IRSKIPHASISSDIIVGFPTETEYDYMQTMDLVRKARFERLNLAVYSPRQGTVASKYFKD 344 Query: 381 QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 V K +R LL LQK++ + N +G+++E+++E KE G GR + Sbjct: 345 DVPREEKVQRLNKLLELQKQINRE---LNMQYLGKVVEIIVEGKTKE-GLYYGRDIRNKV 400 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ +S+ + G+ + ++I + LYG+L Sbjct: 401 IIFSSQEVSEGENVLLKIDKITAGPLYGKL 430 >gi|154483536|ref|ZP_02025984.1| hypothetical protein EUBVEN_01240 [Eubacterium ventriosum ATCC 27560] gi|149735446|gb|EDM51332.1| hypothetical protein EUBVEN_01240 [Eubacterium ventriosum ATCC 27560] Length = 468 Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 166/445 (37%), Positives = 251/445 (56%), Gaps = 18/445 (4%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GCQMN DS ++ + GY+ + + ADL++ NTC +RE A K+Y LG + Sbjct: 36 VVTFGCQMNFKDSEKLMGILSQIGYQETDD-EHADLVLYNTCTVRENANLKIYGRLGYL- 93 Query: 89 NLKNSRIKEGG-DLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144 S+IKE ++++ + GC+ Q E++ + V+++ G ++L ELL +R Sbjct: 94 ----SKIKEKNPEMIIGLCGCMMQEPQVVEKLNKSYRFVDIIFGTHNVFQLAELLYDRLI 149 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G R+ D + E L + RK + + I GC+ FC++C+VPY RG E S Sbjct: 150 GGHRIEDIWDGTTEIVEDLPTI-----RKYDFKSGVNIMYGCNNFCSYCIVPYVRGRERS 204 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+ +V E +L+ NGV E+ LLGQNVN++ GK LD +F+ LL + +++GL R+R Sbjct: 205 RNPEDIVKEVEELVSNGVVEVMLLGQNVNSY-GKTLDN-PISFAKLLEMVEQVEGLERIR 262 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D+SD LI+ + +HLP+QSGS R+LK MNR + +Y ++D++R+ Sbjct: 263 FMTSHPKDLSDELIEVMAKSKKICKQMHLPLQSGSSRLLKIMNRHYDKEQYLTLVDKLRA 322 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PDI IS+D IVGFPGETD+DF T+D+V K Y AF+F YS R GTP + M +QV E Sbjct: 323 AIPDIGISTDIIVGFPGETDEDFEETLDVVRKARYDSAFTFIYSKRSGTPAATMPDQVPE 382 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSK 443 +V ER L + E G + VL+E+ K+ G + GR V Sbjct: 383 DVVKERFDRLLNLVNEISREKTKHLEGTVQSVLVEELNKKIPGYVTGRLSNNSVVHFEGC 442 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 IG I+ V + + K GE+V Sbjct: 443 KELIGKIVDVNLKEAKGFYYMGEMV 467 >gi|260885970|ref|ZP_05736252.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella tannerae ATCC 51259] gi|260851116|gb|EEX70985.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella tannerae ATCC 51259] Length = 458 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 159/448 (35%), Positives = 252/448 (56%), Gaps = 13/448 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++YGCQMNV DS + + GYE ++D+AD + LNTC +R+ A +++ L Sbjct: 19 KHLLIETYGCQMNVADSEVVASVMKMAGYEPTENLDEADAVFLNTCSVRDNAEQRIIHRL 78 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + L+ K G L++ V GC+A+ E +L ++V GP Y LP+L+ +A Sbjct: 79 DALHALR----KHGRRLIIGVLGCMAERVKEGLLHDHH-ADLVAGPDAYLSLPDLIAQAE 133 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + ++ + S + + R + + K ++ F++I GC+ FC +C+VPYTRG E S Sbjct: 134 AGHKAMNIELSTSETY-RDVVPERVCGSK--LSGFVSIMRGCNNFCHYCIVPYTRGRERS 190 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 R + ++ E L D E+TLLGQNVN+ W+ E F LL ++ +R Sbjct: 191 RDVESILREVADLHDKHFKEVTLLGQNVNSYCWQADE-QSEAVNFPGLLRRVARAFPDMR 249 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ T HP+DMSD + + + ++HLPVQSGS+RILK MNR++T Y + I Sbjct: 250 IRFVTPHPKDMSDETLHVIAEEPNVCRHIHLPVQSGSNRILKLMNRKYTREWYLDRVAAI 309 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + P+ +S+D VG+ ET +D + ++ L++++GY AF FKYS R GT S L + Sbjct: 310 RRIVPECGLSTDIFVGYCSETPEDHQESLSLMEEVGYDSAFMFKYSERPGTYASKHLPDD 369 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL 440 + E VK ERL L + N C G++ EVLIE K + +L GR+ + V+ Sbjct: 370 ISEAVKVERLEELIALQNRKSAEANRRCEGKVYEVLIEGTSKRSRDQLFGRTEQNKVVIF 429 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + NH+ G+ I+VR+T +TL GE+V Sbjct: 430 DRGNHHPGEFIRVRVTGSSSATLLGEVV 457 >gi|326798175|ref|YP_004315994.1| (dimethylallyl)adenosine tRNA methylthiotransferase miaB [Sphingobacterium sp. 21] gi|326548939|gb|ADZ77324.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Sphingobacterium sp. 21] Length = 477 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 160/453 (35%), Positives = 258/453 (56%), Gaps = 16/453 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + +G+ +AD++ +NTC IRE A ++V + Sbjct: 31 RKLYIESYGCQMNFADSEIVASILLDKGFSTTPDYKEADVVFINTCSIRENAEQRVRN-- 88 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R++ +++++K+ G ++V V GC+A+ + L +V+VVVGP Y LP L+E+ Sbjct: 89 -RLKEFESAKLKKPG-MIVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRDLPNLIEKVD 146 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G R V+ S E+ + ++ V N GVTAF++I GCD C+FCVVP+TRG E S Sbjct: 147 DGSRAVNVLLSREETYADINPVRLNTN---GVTAFISIMRGCDNMCSFCVVPFTRGRERS 203 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC------TFSDLLYSLSEIK 258 R +V EAR L G E+TLLGQNV++++ + + TF+ LL ++ + Sbjct: 204 RDPYSIVKEARDLFKAGYREVTLLGQNVDSYKWSPQEDDAAANHTTITFAKLLEMVAAVD 263 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L+R+R++TSHP+D++D ++ + + + Y+HLPVQSG+ RIL+ MNR + Y + Sbjct: 264 PLLRVRFSTSHPKDITDEVLYSIARHENICNYIHLPVQSGNSRILELMNRTYDRAWYMER 323 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSN 377 ID I+ + PD AIS+D I GF ET+++ + T+ ++D + Y A+ F YS R GT Sbjct: 324 IDTIKRIIPDCAISTDVITGFCSETEEEHQDTLSMMDYVQYDYAYMFAYSERPGTLAAKR 383 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQ 436 + + E +K RL + +K R + VG+I +VLIE K K GR+ Sbjct: 384 YADDIPEEIKKRRLTEVVEKQRAHSLFRLQQQVGKIHKVLIEGFSKRSDKDYCGRNDQNA 443 Query: 437 SVVLN-SKNHNIGDIIKVRITDVKISTLYGELV 468 VV + +GD + V +TL G++V Sbjct: 444 MVVFPVDARYKVGDYVNVMAETCTSATLIGKIV 476 >gi|315101123|gb|EFT73099.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL046PA1] Length = 494 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 235/399 (58%), Gaps = 17/399 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + V +YGCQMNV+DS R+ + GY R +++ AD++V NTC +RE A ++Y Sbjct: 14 YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K++ + + V GC+AQ + + ++ R+P V+VV G LP LL+RA Sbjct: 74 LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R V+ + S+ L R +A+++I GC+ CTFC+VP RG E Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R +++ E R L++ GV EITLLGQNVN++ G+ G++ F+ LL + I GL Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I+A + +MP LH+P+QSGSD +L+ M R + + ++ I+DR Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P +AI++D IVGFPGETD DF TM +V++ ++ AF+F+YS R TP M +Q Sbjct: 302 VREAIPHVAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 361 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 V + V ER L + + + N A VG+ +EV+ + Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400 >gi|302525513|ref|ZP_07277855.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. AA4] gi|302434408|gb|EFL06224.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. AA4] Length = 493 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 152/415 (36%), Positives = 239/415 (57%), Gaps = 24/415 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + ++++GCQMNV+DS R+ GY DL+V NTC +RE A K+Y LG Sbjct: 6 YQIRTFGCQMNVHDSERLAGQLEEAGYVPAAGQAKPDLVVFNTCAVRENADNKLYGTLGH 65 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R K + D+ + V GC+AQ + +I++R+P V+VV G LP LLERAR Sbjct: 66 LRPDKVANP----DMQIAVGGCLAQKDRGDIVKRAPWVDVVFGTHNIGSLPTLLERARHN 121 Query: 147 KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V+ S+E L R+ +++++ GC+ CTFC+VP RG E R Sbjct: 122 AEAEVEILESLETFPSTLPA-----RRESSYASWVSVSVGCNNTCTFCIVPSLRGKERDR 176 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 +++ E L+ GV E+TLLGQNVN++ G++ G++ F LL + I GL R+R Sbjct: 177 RPGEILAEVEALVAEGVLEVTLLGQNVNSY---GVEFGDRLAFGKLLRATGGIDGLERVR 233 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP + +I A + + LH+P+QSGSDR+L+ M R + + + I+D +R+ Sbjct: 234 FTSPHPAAFTSDVIDAMAETPNVCHQLHMPLQSGSDRVLREMRRSYRSARFLNILDEVRA 293 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD AI++D IVGFPGET++DF+AT+D+V ++ AF+F+YS R GTP + M EQ+ + Sbjct: 294 AMPDAAITTDIIVGFPGETEEDFQATLDVVRAARFSSAFTFQYSKRPGTPAAEMAEQLPK 353 Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432 V E RL+ LQ ++ ++ N VG+ +E+L+ + E ++ GR+ Sbjct: 354 EVVQERYDRLVELQNEISWEE---NRKLVGRRVELLVAAGEGRKDAETHRMSGRA 405 >gi|197303393|ref|ZP_03168432.1| hypothetical protein RUMLAC_02115 [Ruminococcus lactaris ATCC 29176] gi|197297391|gb|EDY31952.1| hypothetical protein RUMLAC_02115 [Ruminococcus lactaris ATCC 29176] Length = 490 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 163/413 (39%), Positives = 239/413 (57%), Gaps = 28/413 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F V ++GCQMN DS ++ + GY + AD ++ NTC +RE A +VY LG+ Sbjct: 53 FCVTTFGCQMNARDSEKLVGILEQIGYVEEPDEEKADFVIYNTCTVRENANLRVYGRLGQ 112 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELLERAR 144 + +K K+ +++ + GC+ Q E E L++S V+++ G Y+ ELL + Sbjct: 113 LGRIK----KKNPHMMIALCGCMMQEPEVVEKLKKSYRFVDLIFGTHNIYKFAELLTNSM 168 Query: 145 FGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 R+V DTD VED V+ Y+ K GV I GC+ FC++C+VPY R Sbjct: 169 QSDRMVIDIWKDTDKIVED-----LPVERKYSFKSGVN----IMFGCNNFCSYCIVPYVR 219 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR +V E +L+ +GV E+ LLGQNVN++ GK L+ TF+ LL + +I+G Sbjct: 220 GRERSRDPKAIVREIERLVADGVVEVMLLGQNVNSY-GKNLE-HPMTFAQLLQEIEKIEG 277 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+ TSHP+D+SD LI+ + +LHLPVQSGS RILK MNR +T Y +++ Sbjct: 278 LERIRFMTSHPKDLSDELIEVMSRSKKICRHLHLPVQSGSSRILKKMNRHYTKEHYLELV 337 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 D+I+ PDI++++D IVGFPGET++DFR T+D+V K+ Y AF+F YS R GTP + M Sbjct: 338 DKIKKAVPDISLTTDIIVGFPGETEEDFRETLDVVRKVRYDSAFTFIYSKRTGTPAAVME 397 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACV---GQIIEVLIEKHGKEKGKLV 429 +QV E +R + L+E Q C G I + L+E + LV Sbjct: 398 DQVSEAEVKDR---FDRLLKEVQTISAQRCAIHEGTIQKALVECQNEHDPSLV 447 >gi|110638221|ref|YP_678430.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cytophaga hutchinsonii ATCC 33406] gi|123058778|sp|Q11U26|MIAB_CYTH3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|110280902|gb|ABG59088.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cytophaga hutchinsonii ATCC 33406] Length = 481 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 161/449 (35%), Positives = 260/449 (57%), Gaps = 13/449 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + +G++ ++ ++AD+I+LNTC IR+ A +KV L Sbjct: 38 RKLYIESYGCQMNFSDSEIVMSILTEEGFDTTSTPNNADVILLNTCSIRDNAEQKVRHRL 97 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + LK ++ ++V V GC+A+ ++L IV++VVGP Y LP L+ Sbjct: 98 VHFKGLKRNK----PSMIVGVLGCMAERLKAQLLEEEKIVDMVVGPDAYRDLPNLINEVD 153 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + V+ S E+ + ++ + + GV+AF++I GCD C+FCVVPYTRG E S Sbjct: 154 SGHKAVNVFLSREETYADINPLRLSGD---GVSAFVSIMRGCDNMCSFCVVPYTRGRERS 210 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 R +++E R+L+ NG E+TLLGQNV++ W +G D E+ F+ LL ++ + +R Sbjct: 211 RDAHSILNEVRELVANGYKEVTLLGQNVDSYKWSAEGTD-ERVNFAQLLERVALVDPDLR 269 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R++TSHP+D++D ++ D + +HLP QSG+ RIL+ MNR +T Y + I +I Sbjct: 270 VRFSTSHPKDITDEVLYTMKKYDNICNSIHLPAQSGNTRILELMNRTYTREWYMERITKI 329 Query: 323 RSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-E 380 R + D ISSD I GF ET+++ + T+ L++ + + F YS R GTP + L + Sbjct: 330 RQILGDDCGISSDTIAGFCSETEEEHQDTLSLMEFARFDFGYQFVYSERPGTPAAKKLAD 389 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVV 439 V E+VK RL + R+ + N A +G I ++LIE K + L GR+ + Sbjct: 390 DVPEDVKQRRLSEIITVQRQLSLEHNQAQIGTIQKILIEGVSKKSEHDLKGRNSRNMMAI 449 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 KN++ G + V IT TL+GE+V Sbjct: 450 FPKKNYSKGQYVDVLITGCSGGTLFGEIV 478 >gi|314966778|gb|EFT10877.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL082PA2] Length = 492 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + V +YGCQMNV+DS R+ + GY R +++ AD++V NTC +RE A ++Y Sbjct: 14 YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K++ + + V GC+AQ + + ++ R+P V+VV G LP LL+RA Sbjct: 74 LGHMAAVKSAHPG----MQLAVGGCMAQKDKDAVVARAPWVDVVFGTHNVGSLPVLLKRA 129 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R V+ + S+ L R +A+++I GC+ CTFC+VP RG E Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R +++ E R L+D GV EITLLGQNVN++ G+ G++ F+ LL + I GL Sbjct: 185 TDRRPGEILSEIRALVDEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I+A + +MP LH+P+QSGSD +L+ M R + + ++ I+DR Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P AI++D IVGFPGETD DF TM +V++ ++ AF+F+YS R TP M +Q Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMEDQ 361 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 V + V ER L + + + N A +G+ +EV+ + Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQIGRAVEVMFAQ 400 >gi|312898810|ref|ZP_07758198.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera micronuciformis F0359] gi|310619972|gb|EFQ03544.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera micronuciformis F0359] Length = 453 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 158/437 (36%), Positives = 251/437 (57%), Gaps = 16/437 (3%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN DS R GY + AD+I++NTC +RE A +KV +G ++LK +R Sbjct: 1 MNESDSERYAGQLEELGYTPTEDPELADVILMNTCCVRETAEDKVLGKIGEFKHLK-TRN 59 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 K DL++ V GC+AQ + + +R+P +++V+G ++L +L++ K Sbjct: 60 K---DLILAVTGCMAQEWQDRLFKRAPHLDLVIGTHNIHKLIDLIKDKEGQKESHMLATE 116 Query: 156 VEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 +ED F + R + A++ I GC+KFCT+C+VPY RG E+SR L ++++E Sbjct: 117 MEDNIFHAVPT-----KRFQKFFAWVPIMNGCNKFCTYCIVPYVRGREVSRPLEEIIEEI 171 Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSHPRDM 273 R L G EITLLGQNVN++ GLD + T FS LLY++ +I G+ R+RY TSHP+DM Sbjct: 172 RNLAKEGYKEITLLGQNVNSY---GLDFKDGTDFSALLYAIEDIDGIERVRYMTSHPKDM 228 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 + +I A ++ ++HLPVQSGS +LK MNR +T Y +++ IR P +++ Sbjct: 229 TFTMIDAIAQCKKVVSHIHLPVQSGSTELLKRMNRGYTTEHYEELVSYIREKMPQAVLTT 288 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 D IVGFPGET+ F+ T+DL+ ++ Y A++F YSPR GTP + M Q+ ++ K+ RL Sbjct: 289 DIIVGFPGETEAMFQETLDLLRRVRYDMAYTFIYSPRTGTPAATMDNQIPQDEKSRRLKR 348 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVL-NSKNHNIGDII 451 L E +++N G+ EV++E K ++ GR+ + ++ N +GD I Sbjct: 349 LADVQNEISLAYNVEMEGKDYEVIVEGPTKNDENHWFGRTRGNKMIIWENDGTSAVGDTI 408 Query: 452 KVRITDVKISTLYGELV 468 +V + + L G ++ Sbjct: 409 RVHVDKGQTWVLKGHVL 425 >gi|282854035|ref|ZP_06263372.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes J139] gi|282583488|gb|EFB88868.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes J139] gi|314981113|gb|EFT25207.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL110PA3] gi|315091939|gb|EFT63915.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL110PA4] gi|315093305|gb|EFT65281.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL060PA1] gi|315103440|gb|EFT75416.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL050PA2] gi|327327604|gb|EGE69380.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL103PA1] Length = 492 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + V +YGCQMNV+DS R+ + GY R +++ AD++V NTC +RE A ++Y Sbjct: 14 YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K++ + + V GC+AQ + + ++ R+P V+VV G LP LL+RA Sbjct: 74 LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R V+ + S+ L R +A+++I GC+ CTFC+VP RG E Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R +++ E R L+D GV EITLLGQNVN++ G+ G++ F+ LL + I GL Sbjct: 185 TDRRPGEILSEIRALVDEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I+A + +MP LH+P+QSGSD +L+ M R + + ++ I+DR Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P AI++D IVGFPGETD DF TM +V++ ++ AF+F+YS R TP M +Q Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMEDQ 361 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 V + V ER L + + + N A +G+ +EV+ + Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQIGRAVEVMFAQ 400 >gi|189218731|ref|YP_001939372.1| 2-methylthioadenine synthetase [Methylacidiphilum infernorum V4] gi|229890614|sp|B3E0M0|MIAB_METI4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|189185589|gb|ACD82774.1| 2-methylthioadenine synthetase [Methylacidiphilum infernorum V4] Length = 467 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 152/444 (34%), Positives = 255/444 (57%), Gaps = 13/444 (2%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 F+K++GCQMNV DS ++ F +GY+ +S AD+I++NTC +R A EK L + Sbjct: 5 FIKTFGCQMNVRDSEQVLQDFIERGYQIASSEKWADIILINTCSVRAMAEEKAIDKLASL 64 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 + K K+ +L++ + GC+AQ G EI + V++V+G Q ++++ E+ + Sbjct: 65 KTAK----KKNPNLVLGIIGCMAQNRGREIAEKYRFVDLVLGTQKFHKVAEIADNLLKNP 120 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + + + + ++ + K A+++I +GC C+FC+VP TRG E SR + Sbjct: 121 DRSSSYVDLSKEEAAHNAINKHLSTKAQPIAYVSIMQGCSMHCSFCIVPTTRGEERSRPI 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLVRLRY 265 ++ +E ++L + V EI LLGQ VN + K K F LL LS I+ + R+R+ Sbjct: 181 DEIFEEVKRLAETSVKEIVLLGQIVNRYGAKEFPWVKGKSPFVQLLEKLSTIEEIKRIRF 240 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 T+ HP + LI A D+ L ++HLPVQSGSD+ILK+M R ++ ++ ++D++R Sbjct: 241 TSPHPLGFKEDLIAALRDIPQLCEHVHLPVQSGSDKILKAMRRGYSRSKFLSLVDKLRKA 300 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P +A+S+D IVG+PGET++DF+ T L++++ + AF F+YS R GT +++ +Q+ E Sbjct: 301 IPQLALSTDIIVGYPGETEEDFQQTCSLLNEVRFDNAFIFRYSAREGTTAASLGDQLSEE 360 Query: 386 VKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVLN 441 VK E RLL +Q K+ ++ VGQ++E+L+E K+ K GR+ V++ Sbjct: 361 VKFERNYRLLEIQNKITMEKA---QKWVGQVVEILVEGESKKNASKFQGRTRTNHLVIIP 417 Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465 G+ + VRI + T YG Sbjct: 418 KNERWRGEFLPVRIVETTGHTFYG 441 >gi|314923002|gb|EFS86833.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL001PA1] Length = 492 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + V +YGCQMNV+DS R+ + GY R +++ AD++V NTC +RE A ++Y Sbjct: 14 YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K++ + + V GC+AQ + + ++ R+P V+VV G LP LL+RA Sbjct: 74 LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R V+ + S+ L R +A+++I GC+ CTFC+VP RG E Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R +++ E R L+D GV EITLLGQNVN++ G+ G++ F+ LL + I GL Sbjct: 185 TDRRPGEILSEIRALVDEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I+A + +MP LH+P+QSGSD +L+ M R + + ++ I+DR Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P AI++D IVGFPGETD DF TM +V++ ++ AF+F+YS R TP M +Q Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMEDQ 361 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 V + V ER L + + + N A +G+ +EV+ + Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQIGRAVEVMFAQ 400 >gi|224003997|ref|XP_002291670.1| hypothetical protein THAPSDRAFT_41246 [Thalassiosira pseudonana CCMP1335] gi|220973446|gb|EED91777.1| hypothetical protein THAPSDRAFT_41246 [Thalassiosira pseudonana CCMP1335] Length = 453 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 162/457 (35%), Positives = 264/457 (57%), Gaps = 30/457 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA----------DLIVLNTCHIREKA 76 + + + GCQMNV DS R+ M +G + S+DD D+++LNTC IR+ A Sbjct: 11 YKILTAGCQMNVADSERI--MGVLEGELGLTSLDDTEENTNKQTTPDILLLNTCTIRDHA 68 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 +KVY LG +LK ++G L +VVAGCVAQ EGE +LRR P +++V+GPQ L Sbjct: 69 EQKVYDALGPYASLK----RDGKPLAIVVAGCVAQQEGEALLRRFPEIDLVLGPQYIPWL 124 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 +LL G ++ T+ + + + R V A++ + GC++ CT+CVVP Sbjct: 125 GDLLVEVGKGSQLCMTESMIWNWMVPIK-------RGHSVRAWVNVIYGCNEHCTYCVVP 177 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 RG+E SRS+ ++ E +L +G E+TLLGQN++A+ G+ + + TF+DLL+ L++ Sbjct: 178 SVRGVEQSRSMEAILQECVQLAASGYKEVTLLGQNIDAY-GRDMTPRR-TFADLLHYLND 235 Query: 257 ---IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 + R+RY TSHPR SD +I A DLD + H+P Q+G D++L+ M R +T Sbjct: 236 NLPPDTISRIRYVTSHPRYFSDRVIDAVADLDKVCECFHMPFQAGDDQVLRDMRRGYTYA 295 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 Y II +IR+ PD +I D IVGFP ETD+ F+ T+DL++++ + +F YSPR T Sbjct: 296 SYMNIIKKIRAKAPDASICGDIIVGFPNETDEAFQRTLDLMEEVKFDNLNTFAYSPRPNT 355 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRS 432 +N Q+ +V++ERL +Q + + + G+++EVL+E + G +++GR+ Sbjct: 356 EAANWENQIPPDVQSERLQRVQALAAKHALERSQRYEGRVVEVLVEDRNPKNGNEVMGRT 415 Query: 433 PWLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468 + V + G+++ V++ + + +L G+L Sbjct: 416 RQGRQVFFEGSVDELKGELVMVKVVEARTWSLVGKLA 452 >gi|315604451|ref|ZP_07879517.1| tRNA-I(6)A37 thiotransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315314157|gb|EFU62208.1| tRNA-I(6)A37 thiotransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 512 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 160/472 (33%), Positives = 265/472 (56%), Gaps = 43/472 (9%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---------- 62 M + ++P+ + V++ GCQMN +DS RM + G V + +A Sbjct: 1 MNTMTPQDAVLPRTYAVRTLGCQMNEHDSERMAGLLEQAGLIPVEKVPEAAARATDAGDM 60 Query: 63 --DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120 D++V+NTC +RE AA +++ LG++ +K R + + V GC+AQ + I+ + Sbjct: 61 GADVVVINTCSVRENAATRLFGNLGQLAAVKRKRPG----MQIAVGGCLAQQMRDGIVEK 116 Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTA 178 +P V+ V G LP LL RA +++ +VE + E L + +R+ A Sbjct: 117 APWVDAVFGTHNIDVLPALLRRAEH-----NSEAAVEIE-ESLKVFPSTLPTHRESVYAA 170 Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238 +++I GC+ CTFC+VP RG E R ++ E + G E+TLLGQNVN++ G Sbjct: 171 WVSISVGCNNTCTFCIVPRLRGKERDRRPGDILAEVEAVASQGAIEVTLLGQNVNSY-GV 229 Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 G GE+ F+DLL ++ + G+ R+R+T+ HP +D +I+A + +MP LH+P+QSG Sbjct: 230 GF-GERGAFADLLRAVGRVDGIERVRFTSPHPAAFTDDVIEAMANTPTVMPSLHMPLQSG 288 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 SD +L+ M R + + I++R+R+ PD AI++D IVGFPGET++DF+AT+D+V++ Sbjct: 289 SDAVLRQMRRSYRRERFMGILERVRAAIPDAAITTDIIVGFPGETEEDFQATLDVVEQAR 348 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIE 415 + AF+F YSPR GTP ++ ++V ++V E RL+ LQ+ + Q N A VG +E Sbjct: 349 FTSAFTFLYSPRPGTPAADREDRVPDDVALERYQRLVALQESICAQD---NAALVGTDVE 405 Query: 416 VLIEK-HGKEKG---KLVGRSP-------WLQSVVLNSKNHNIGDIIKVRIT 456 VL+ G++ G ++ GR+ L + + + GD+I+ +T Sbjct: 406 VLVSSGDGRKDGATHRISGRARDNRLVHVALPAGLAAGERPRPGDMIRATVT 457 >gi|229495400|ref|ZP_04389135.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Porphyromonas endodontalis ATCC 35406] gi|229317843|gb|EEN83741.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Porphyromonas endodontalis ATCC 35406] Length = 462 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 162/455 (35%), Positives = 259/455 (56%), Gaps = 25/455 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++YGCQMNV DS + + + GYE +S DDAD I++NTC +RE A +KV L Sbjct: 11 KKIHIETYGCQMNVADSEVVAAIMETAGYEMSDSPDDADAILINTCSVRENAEKKV---L 67 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R+ + R K G ++ V GC+A+ +E++ + ++V GP Y LP L Sbjct: 68 NRLEHYNQLRRKHGKPSIIGVLGCMAERVRQELIEKHG-ADIVAGPDAYNDLPNLFAAVE 126 Query: 145 FGKRVVDTDYSVEDKF-ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G++ ++ D S + + + + + G + +T F++I GCD +CT+C+VPYTRG E Sbjct: 127 TGEKAINIDLSRTETYRDVIPLKLAGLH----ITGFVSIMRGCDNYCTYCIVPYTRGHER 182 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL--DGEKCTFSDLLYSLSEIKGLV 261 SR + ++ E +++ G E+TLLGQNVN++R + D F+DLL +++E + Sbjct: 183 SREVESILREIDHMVELGYREVTLLGQNVNSYRREAATPDAPPFDFADLLQAVAERAPKM 242 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP+DMSD I + +HLPVQSGS+ ILK M R +T Y +DR Sbjct: 243 RIRFTSPHPKDMSDKTIAVMARYPNICKQIHLPVQSGSNHILKQMKRGYTREWY---LDR 299 Query: 322 IRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +R++R P+ +I +D GF GE+++DF+ T+ L+ ++ + AF FKYS R GT + Sbjct: 300 VRAIREAMPECSIGTDMFCGFCGESEEDFQETLRLMREVAFDSAFMFKYSERPGTFAAKH 359 Query: 379 LE-QVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSP 433 L+ V E K RL + LQ +L ++ N +G+ EVL+E K + +L GR+ Sbjct: 360 LQDDVPEETKIRRLNEMIALQNEL---SLASNKRDIGKQFEVLVEGTSKRSREELFGRTS 416 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + VV + IG + V I D +TL G+ V Sbjct: 417 QNKVVVFPKEQARIGQFVVVEIHDATSATLLGKEV 451 >gi|305433013|ref|ZP_07402169.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter coli JV20] gi|304443714|gb|EFM36371.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter coli JV20] Length = 433 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 165/447 (36%), Positives = 247/447 (55%), Gaps = 20/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS M ++ Y + +ADLI++NTC +REK K++S Sbjct: 4 KKLFIQTLGCAMNVRDSEHMIAELTQKDNYTLTEDIKEADLILINTCSVREKPVHKLFSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G +K S K G V GC A G EI RR+P V+ V+G + ++ + + Sbjct: 64 VGGFEKVKKSGAKIG------VCGCTASHLGSEIFRRAPYVDFVLGARNISKITQAVNTP 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +F VD DY E +F G R +++ I GCDK CT+C+VP+TRG EI Sbjct: 118 KFMS--VDIDYD-ESEFA------FGDFRNSIYKSYINISIGCDKHCTYCIVPHTRGDEI 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261 S L+ + EA+K +D G EI LLGQNVN + GK E K FSDLL LS I+GL Sbjct: 169 SIPLNIIYKEAQKAVDKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEGLE 227 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP M D ++ + +H+P+QSGS +ILK+M R +T Y + Sbjct: 228 RIRFTSPHPLHMDDKFLEVFAKNPKVCKSMHMPLQSGSSQILKAMKRGYTKEWYLDRALK 287 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R + P+++IS+D IV FPGE+D DF TM++++K+ + Q FSFKYS R T + M Q Sbjct: 288 LRELCPNVSISTDIIVAFPGESDKDFEETMEVLEKVRFEQMFSFKYSKRPLTKAATMPNQ 347 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 +DE + + RL LQ + E + +VL E+ + +VGR+ V + Sbjct: 348 IDEEIASNRLSTLQARHNEILDDIVKKQENKTFKVLFEEL-RAGNAIVGRTDNNFLVQVE 406 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G +V+IT+ K LYGE++ Sbjct: 407 GSEELLGTFKEVKITNAKRMVLYGEII 433 >gi|289642430|ref|ZP_06474576.1| RNA modification enzyme, MiaB family [Frankia symbiont of Datisca glomerata] gi|289507775|gb|EFD28728.1| RNA modification enzyme, MiaB family [Frankia symbiont of Datisca glomerata] Length = 469 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 166/435 (38%), Positives = 249/435 (57%), Gaps = 31/435 (7%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNV+DS R+ M + GY + D++V NTC +RE A ++Y LG++ K Sbjct: 1 MNVHDSERIAGMLEAAGYVPAATDVTPDVVVFNTCAVRENADNRLYGNLGQMYPAK---- 56 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 K + + V GC+AQ + I R+P V+VV G +RLP LLERAR + Sbjct: 57 KHHPGMQIAVGGCLAQKDRATITERAPWVDVVFGTHNLHRLPVLLERARH-----NAAAE 111 Query: 156 VEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 VE E L + +R +A+++I GCD CTFC+VP RG E R V+ E Sbjct: 112 VE-IVEALEVFPSALPSRRSTHHSAWVSISVGCDNTCTFCIVPSLRGREADRRPGGVLAE 170 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 L+ +GV EITLLGQNVN++ G+ L G+ F+ LL++ I GL R+R+T+ HPRD Sbjct: 171 VEALVADGVIEITLLGQNVNSY-GRSL-GDPGAFAKLLHACGTIDGLERVRFTSPHPRDF 228 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D +I+A + P LH+P+QSGSD +L+ M R + + I++R+R+V P AI++ Sbjct: 229 TDDVIEAMAATPNVCPQLHMPLQSGSDAVLRRMRRSYRQERFLGILERVRAVMPHAAITT 288 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAER 390 D IVGFPGET+ DF T+ +V + +A AF+F+YS R GTP + M QVD + ER Sbjct: 289 DIIVGFPGETEADFADTLRVVREARFAGAFTFQYSARAGTPAAAMDGQVDPAAVRDRYER 348 Query: 391 LLCLQKKLREQQVSF--NDACVGQIIEVL-IEKHGKE---KGKLVGRSPWLQSVVLNSKN 444 L+ +Q ++S+ N A VGQ +EVL +E G++ G+ GR+ + V L + + Sbjct: 349 LVAVQ-----DEISWVGNRALVGQPVEVLVVEGEGRKDAATGRRSGRARDGRLVHLGAPS 403 Query: 445 HNI---GDIIKVRIT 456 + GD+++ +T Sbjct: 404 AALIRPGDVVRTAVT 418 >gi|325661614|ref|ZP_08150238.1| hypothetical protein HMPREF0490_00972 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472141|gb|EGC75355.1| hypothetical protein HMPREF0490_00972 [Lachnospiraceae bacterium 4_1_37FAA] Length = 491 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 163/437 (37%), Positives = 245/437 (56%), Gaps = 23/437 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GCQMN DS ++ + GY+ + +DAD ++ NTC +RE A +VY LG++ + Sbjct: 61 TFGCQMNARDSEKLLGVLEQIGYQEETNEEDADFVIYNTCTVRENANMRVYGRLGQLNRV 120 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 K K+ +L+ + GC+ Q E+I + V+++ G Y+ EL+ +R Sbjct: 121 K----KQKPHMLIGLCGCMMQEPEVVEKIKKSYRFVDLIFGTHNIYKFAELIVTRLESQR 176 Query: 149 VV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +V DTD VED RK + + I GC+ FC++C+VPY RG E Sbjct: 177 MVIDIWKDTDKIVEDL---------PSERKFSFKSGVNIMFGCNNFCSYCIVPYVRGRER 227 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR+ ++ E + L+ +GV E+ LLGQNVN++ GK L+ TF+ LL + +I+GL R+ Sbjct: 228 SRNPEDIIREIQGLVADGVVEVMLLGQNVNSY-GKTLE-HPMTFAQLLTEIEKIEGLERI 285 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD LI+ + +LHLPVQSGS ILK MNRR+T +Y +++ +I+ Sbjct: 286 RFMTSHPKDLSDELIEVMKHSKKICKHLHLPVQSGSTEILKKMNRRYTKEQYLELVRKIK 345 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PDI++++D IVGFPGET++DF TMD+V K+ Y AF+F YS R GTP + M QV Sbjct: 346 EAVPDISLTTDIIVGFPGETEEDFLETMDVVKKVRYDSAFTFIYSKRTGTPAAAMENQVP 405 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442 E+V +R L K+++ G VL+E LV GR V Sbjct: 406 EDVVKDRFDRLLKEVQSISAEVCSVHEGTTQSVLVEAVNDHDPALVTGRLSNNILVHFPG 465 Query: 443 KNHNIGDIIKVRITDVK 459 + IG I+ VR+ K Sbjct: 466 EKELIGKIVSVRLDACK 482 >gi|295094832|emb|CBK83923.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coprococcus sp. ART55/1] Length = 483 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 166/444 (37%), Positives = 252/444 (56%), Gaps = 16/444 (3%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 ++++GCQMNV DS ++ + GY R S + AD I+ NTC +RE A KVY LG ++ Sbjct: 51 IQTFGCQMNVRDSEKLAGILEQMGYVRTES-EHADFIIYNTCTVRENANRKVYGHLGLMK 109 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPEL-LERARF 145 +LK ++ ++ + + GC+ Q + I + V++V G Y+L E+ + R Sbjct: 110 HLK----EKNPEMKIALCGCMMQEQHVVTTISKSYRFVDMVFGTHNVYKLAEIFVSRIES 165 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G V+D ++ E L V R+ + + I GC+ FCT+C+VPY RG E SR Sbjct: 166 GSMVIDIWKDAKEVVEDLPAV-----REFPFKSGVNIMFGCNNFCTYCIVPYVRGRERSR 220 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + ++ E +L D+GV EI LLGQNVN++ GK L+ TF++LL + I+ + R+R+ Sbjct: 221 NPEDIIAECERLADDGVVEIMLLGQNVNSY-GKNLE-HPITFAELLRRVCAIEKIQRVRF 278 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TSHP+D+SD LI + + +LHLPVQSGS +IL +MNRR+T Y ++DRIR+ Sbjct: 279 MTSHPKDLSDELIDVIAENQKICRHLHLPVQSGSTKILNAMNRRYTKESYLALVDRIRAK 338 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+I++++D IVGFPGET++DF TMD+V+K+ Y AF+F YS R GTP + M + Sbjct: 339 IPEISLTTDIIVGFPGETEEDFLETMDVVEKVQYDTAFTFIYSKRTGTPAAGMENGSTKE 398 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKN 444 +R L ++++E A GQ VL+E K G L GR V Sbjct: 399 EIQDRYNRLLRRVQEISDVKTIAIKGQTQPVLVEGFDEKGDGLLTGRLSNNILVHFPGCA 458 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 +G I+ V++ + K GEL Sbjct: 459 EMVGKILNVKLVECKGFYYMGELA 482 >gi|313772146|gb|EFS38112.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL074PA1] gi|313810010|gb|EFS47731.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL083PA1] gi|313830338|gb|EFS68052.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL007PA1] gi|313833712|gb|EFS71426.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL056PA1] gi|314973343|gb|EFT17439.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL053PA1] gi|314976020|gb|EFT20115.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL045PA1] gi|314983958|gb|EFT28050.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL005PA1] gi|315096258|gb|EFT68234.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL038PA1] gi|327326170|gb|EGE67960.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL096PA2] gi|327445942|gb|EGE92596.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL043PA2] gi|327448079|gb|EGE94733.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL043PA1] gi|328760608|gb|EGF74175.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL099PA1] Length = 494 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + V +YGCQMNV+DS R+ + GY R +++ AD++V NTC +RE A ++Y Sbjct: 14 YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K++ + + V GC+AQ + + ++ R+P V+VV G LP LL+RA Sbjct: 74 LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R V+ + S+ L R +A+++I GC+ CTFC+VP RG E Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R +++ E R L++ GV EITLLGQNVN++ G+ G++ F+ LL + I GL Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I+A + +MP LH+P+QSGSD +L+ M R + + ++ I+DR Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P AI++D IVGFPGETD DF TM +V++ ++ AF+F+YS R TP M +Q Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 361 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 V + V ER L + + + N A VG+ +EV+ + Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400 >gi|327453856|gb|EGF00511.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL083PA2] Length = 494 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + V +YGCQMNV+DS R+ + GY R +++ AD++V NTC +RE A ++Y Sbjct: 14 YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K++ + + V GC+AQ + + ++ R+P V+VV G LP LL+RA Sbjct: 74 LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R V+ + S+ L R +A+++I GC+ CTFC+VP RG E Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R +++ E R L++ GV EITLLGQNVN++ G+ G++ F+ LL + I GL Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I+A + +MP LH+P+QSGSD +L+ M R + + ++ I+DR Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P AI++D IVGFPGETD DF TM +V++ ++ AF+F+YS R TP M +Q Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 361 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 V + V ER L + + + N A VG+ +EV+ + Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400 >gi|289449396|ref|YP_003475195.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289183943|gb|ADC90368.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 485 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 153/410 (37%), Positives = 236/410 (57%), Gaps = 18/410 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +F++++GCQ N DS ++ + GY + + AD++++NTC +RE A+++ + LG Sbjct: 31 YFIQTFGCQQNDNDSEKLAGLLQKMGYTPAANRESADIVLINTCSVRENASDRFFGNLGI 90 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ LK K +L+ GC+ + E E+I R P V+V++ P YR PELL R Sbjct: 91 LKPLK----KSNPGMLICTCGCMMKQEEVVEKIKRSYPFVDVLLAPSDLYRFPELLWRRL 146 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYN--RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G R V D + +D +V G +R A TI GC+ +CT+C+VP+TRG E Sbjct: 147 NGTRRV-YDITADD------VVAEGIPVLHERKYRALCTIMYGCNNYCTYCIVPFTRGRE 199 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR +++ E ++L +G E+ LLGQNVN++ G+ L +K +F++LL +E GL R Sbjct: 200 RSRQPEEILRELQELAASGYTEVMLLGQNVNSY-GRDL-ADKMSFAELLALAAEHSGLPR 257 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RY TSHP+D+S LI + ++HLP+QSGSD +L+ MNR + Y I+D Sbjct: 258 IRYMTSHPKDLSPELIDVMAAYPNIERHIHLPLQSGSDAVLRKMNRHYNIARYMSIVDLA 317 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + PD++I++D IVGFPGET+ DF T+ +V ++GY AF+F+YSPR GTP + QV Sbjct: 318 KRKIPDLSITTDIIVGFPGETEADFAETLRIVGEVGYDSAFTFQYSPRPGTPAAKWTNQV 377 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGR 431 V +ER L + ++ N + + EVLIE G GR Sbjct: 378 PAEVVSERFDRLVTLQNQNSLAANLRRLNRSGEVLIEGISDHNPGMFTGR 427 >gi|296274350|ref|YP_003656981.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arcobacter nitrofigilis DSM 7299] gi|296098524|gb|ADG94474.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arcobacter nitrofigilis DSM 7299] Length = 439 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 158/452 (34%), Positives = 263/452 (58%), Gaps = 29/452 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GCQMN DS + ++ + Y+ ++M+DADLI++NTC +REK +K++S Sbjct: 7 KKLFIQTLGCQMNDTDSQHIIAELEKYKDYKTTDNMEDADLIIINTCSVREKPVQKLFSE 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G+ N++ K+G + V GC A G++I++R+P V+ VVG + ++ Sbjct: 67 IGQF----NAKKKDGAK--IGVCGCTASHLGKDIIKRAPYVDFVVGARNISKI------- 113 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF----LTIQEGCDKFCTFCVVPYTR 199 K ++D +VE E D Y R T+ + I GCDK CT+C+VP TR Sbjct: 114 ---KDIIDVKGAVEISIEN---DDSTYEFARSETSMYKTSVNISIGCDKECTYCIVPATR 167 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIK 258 G EIS +V + +K +D G E+ LLGQNVN++ + D K TF+ LL +S+I+ Sbjct: 168 GDEISIPPEMIVQQIQKDVDKGAVEVMLLGQNVNSYGRRFSDKRAKTTFTKLLQEISKIE 227 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R+T+ HP M D I+ + +H+P+QSGS ILK+M R +T + Sbjct: 228 GLRRIRFTSPHPLHMDDEFIEEFSSNPKISKCIHMPLQSGSTSILKAMKRGYTKEWFLNR 287 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++IR + P++ I++D IVGFPGET +DF TMD+++K+ + Q F+FKYSPR T + Sbjct: 288 AEKIRRLVPNVRITTDIIVGFPGETQEDFEDTMDVIEKVKFDQIFNFKYSPRPNTAALAL 347 Query: 379 LEQ-VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQ 436 +Q +D+ + RL+ + +E V ++ +G+ +E+L+E + K G++ G + W Q Sbjct: 348 KDQEIDDEIAGARLIKVIDLHKEHLVEHMNSHIGKTVEILVE-NLKSDGEVCGFTDNWCQ 406 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + + +G +KV+I D + L GE++ Sbjct: 407 -VFVKGSDELLGKFVKVKINDASRTALKGEVI 437 >gi|315080658|gb|EFT52634.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL078PA1] Length = 494 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + V +YGCQMNV+DS R+ + GY R +++ AD++V NTC +RE A ++Y Sbjct: 14 YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K++ + + V GC+AQ + + ++ R+P V+VV G LP LL+RA Sbjct: 74 LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R V+ + S+ L R +A+++I GC+ CTFC+VP RG E Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R +++ E R L++ GV EITLLGQNVN++ G+ G++ F+ LL + I GL Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I+A + +MP LH+P+QSGSD +L+ M R + + ++ I+DR Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P AI++D IVGFPGETD DF TM +V++ ++ AF+F+YS R TP M +Q Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 361 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 V + V ER L + + + N A VG+ +EV+ + Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400 >gi|212550847|ref|YP_002309164.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|229890446|sp|B6YRD1|MIAB_AZOPC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|212549085|dbj|BAG83753.1| tRNA-i(6)A37 modification enzyme MiaB [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 449 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 158/448 (35%), Positives = 267/448 (59%), Gaps = 20/448 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R F+++YGCQMN+ DS + + G+E ++ +AD++++NTC +RE A +K++S L Sbjct: 13 RRIFIETYGCQMNIADSEIVIAIVQMDGFEYTENILEADVVLINTCSVRENAEKKIFSRL 72 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++LK R L++ V GC+A+ E ++++ V++VVGP +Y LP L+ Sbjct: 73 QYFQSLKKKR----NQLIIGVLGCMAKRIRETLIQQYH-VDLVVGPDSYMDLPHLIGTVE 127 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + ++ + S + ++ IV +R + ++ F++I GC+ FC++C+VPYTRG E S Sbjct: 128 KGAKAININLSSTEVYK--GIVPLKLSRIK-ISGFISIIRGCNNFCSYCIVPYTRGRERS 184 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRL 263 R +++E L + G E+ LLGQNVN++ K E T F LL ++ +R+ Sbjct: 185 RDPKSILNELHILKEQGYKEVILLGQNVNSYFYKN---ENITDFPHLLELVALNAPEMRI 241 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP+DM D ++ + + ++HLP+QSGS +IL++MNR++T Y Q + IR Sbjct: 242 RFTTSHPKDMGDETLRVIAKYNNICKHIHLPIQSGSSKILRAMNRKYTREWYLQRVTSIR 301 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQV 382 + P+++IS+D GFP ET++D + T+ L+ ++G+ AF FKYS R T S L + V Sbjct: 302 KIVPEVSISTDLFCGFPSETEEDHKKTLSLMKEVGFDSAFMFKYSERPETYASRYLPDNV 361 Query: 383 DENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 E VK RL + LQ K+ + N +G+ +E+LIE K + +L GR+ + V Sbjct: 362 PEEVKIRRLNEIITLQLKISLMK---NKENIGKTMEILIEGFSKRSREQLFGRTLQNKIV 418 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGE 466 + KN++IG+ + V I +TL+G+ Sbjct: 419 LFPRKNYHIGEKVLVEIKKASAATLFGD 446 >gi|50842500|ref|YP_055727.1| MiaB family protein [Propionibacterium acnes KPA171202] gi|81611809|sp|Q6A8Z7|MIAB_PROAC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|50840102|gb|AAT82769.1| MiaB family protein [Propionibacterium acnes KPA171202] gi|313764472|gb|EFS35836.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL013PA1] gi|313812959|gb|EFS50673.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL025PA1] gi|313816010|gb|EFS53724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL059PA1] gi|313827761|gb|EFS65475.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL063PA2] gi|314915464|gb|EFS79295.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL005PA4] gi|314918252|gb|EFS82083.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL050PA1] gi|314920065|gb|EFS83896.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL050PA3] gi|314932079|gb|EFS95910.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL067PA1] gi|314955740|gb|EFT00140.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL027PA1] gi|314958155|gb|EFT02258.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL002PA1] gi|314967816|gb|EFT11915.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL037PA1] gi|315098519|gb|EFT70495.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL059PA2] gi|315105399|gb|EFT77375.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL030PA1] gi|315108344|gb|EFT80320.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL030PA2] gi|328754531|gb|EGF68147.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL025PA2] Length = 494 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + V +YGCQMNV+DS R+ + GY R +++ AD++V NTC +RE A ++Y Sbjct: 14 YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K++ + + V GC+AQ + + ++ R+P V+VV G LP LL+RA Sbjct: 74 LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R V+ + S+ L R +A+++I GC+ CTFC+VP RG E Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R +++ E R L++ GV EITLLGQNVN++ G+ G++ F+ LL + I GL Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I+A + +MP LH+P+QSGSD +L+ M R + + ++ I+DR Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P AI++D IVGFPGETD DF TM +V++ ++ AF+F+YS R TP M +Q Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 361 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 V + V ER L + + + N A VG+ +EV+ + Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400 >gi|313792158|gb|EFS40259.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL110PA1] gi|313801889|gb|EFS43123.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL110PA2] gi|313838715|gb|EFS76429.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL086PA1] gi|314962816|gb|EFT06916.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL082PA1] gi|315078033|gb|EFT50084.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL053PA2] gi|327453124|gb|EGE99778.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL092PA1] Length = 494 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + V +YGCQMNV+DS R+ + GY R +++ AD++V NTC +RE A ++Y Sbjct: 14 YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K++ + + V GC+AQ + + ++ R+P V+VV G LP LL+RA Sbjct: 74 LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R V+ + S+ L R +A+++I GC+ CTFC+VP RG E Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R +++ E R L++ GV EITLLGQNVN++ G+ G++ F+ LL + I GL Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I+A + +MP LH+P+QSGSD +L+ M R + + ++ I+DR Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P AI++D IVGFPGETD DF TM +V++ ++ AF+F+YS R TP M +Q Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 361 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 V + V ER L + + + N A VG+ +EV+ + Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400 >gi|255530165|ref|YP_003090537.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pedobacter heparinus DSM 2366] gi|255343149|gb|ACU02475.1| RNA modification enzyme, MiaB family [Pedobacter heparinus DSM 2366] Length = 485 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 168/456 (36%), Positives = 254/456 (55%), Gaps = 18/456 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + QG+E +AD++ +NTC IRE A ++V + L Sbjct: 31 RKLYIESYGCQMNFADSEIVASILLDQGFETTGDYKEADVVFINTCSIRENAEQRVRNRL 90 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + K K L+V V GC+A+ + L +V+VVVGP Y LP+LL Sbjct: 91 SQFGAEKRRNPK----LIVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRELPQLLNEVE 146 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + ++ S E+ + +S V N G+TAF++I GCD C+FCVVP+TRG E S Sbjct: 147 SGHKAINVLLSREETYADISPVRLNGN---GITAFISIMRGCDNMCSFCVVPFTRGRERS 203 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGEK------CTFSDLLYSLSE 256 R ++ EA+ L D G E+TLLGQNV++ W+G D + F+ LL ++ Sbjct: 204 RDPHSILAEAQDLFDRGYKEVTLLGQNVDSYKWKGAATDENREAQEIEVNFAQLLEKVAL 263 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I +R+R++TSHP+D++D ++ + + Y+HLPVQSGS R+L+ MNR +T Y Sbjct: 264 ISPELRVRFSTSHPKDITDEVLYTIAKYENICNYIHLPVQSGSTRVLELMNRTYTREWYI 323 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ID IR + PD AISSD I GF ET+++ + T+ ++D +GY AF+F YS R GT + Sbjct: 324 NRIDAIRQIIPDCAISSDIIAGFCTETEEEHQETLSIMDYVGYDFAFTFSYSERPGTLAA 383 Query: 377 NMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPW 434 LE V E VK RL + K +E + VG+ +++L+E K+ + GR+ Sbjct: 384 RKLEDDVPEEVKKRRLAEILAKQQETSLFRLQQFVGKTVKILVEGTSKKSDRDFCGRNDQ 443 Query: 435 LQSVVL-NSKNHNIGDIIKVRITDVKISTLYGELVV 469 VV + G + V I +TL G +VV Sbjct: 444 NAMVVFPATAGIKAGQYVNVHIDRCTSATLLGTVVV 479 >gi|313807502|gb|EFS45989.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL087PA2] gi|313818544|gb|EFS56258.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL046PA2] gi|313820311|gb|EFS58025.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL036PA1] gi|313822882|gb|EFS60596.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL036PA2] gi|313825186|gb|EFS62900.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL063PA1] gi|314925198|gb|EFS89029.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL036PA3] gi|314960019|gb|EFT04121.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL002PA2] gi|314978441|gb|EFT22535.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL072PA2] gi|314988142|gb|EFT32233.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL005PA2] gi|314989946|gb|EFT34037.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL005PA3] gi|315084330|gb|EFT56306.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL027PA2] gi|315085672|gb|EFT57648.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL002PA3] gi|315088906|gb|EFT60882.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL072PA1] gi|327331955|gb|EGE73692.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL096PA3] gi|327443156|gb|EGE89810.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL013PA2] gi|328753487|gb|EGF67103.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL020PA1] gi|332675417|gb|AEE72233.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Propionibacterium acnes 266] Length = 494 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + V +YGCQMNV+DS R+ + GY R +++ AD++V NTC +RE A ++Y Sbjct: 14 YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K++ + + V GC+AQ + + ++ R+P V+VV G LP LL+RA Sbjct: 74 LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R V+ + S+ L R +A+++I GC+ CTFC+VP RG E Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R +++ E R L++ GV EITLLGQNVN++ G+ G++ F+ LL + I GL Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I+A + +MP LH+P+QSGSD +L+ M R + + ++ I+DR Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P AI++D IVGFPGETD DF TM +V++ ++ AF+F+YS R TP M +Q Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 361 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 V + V ER L + + + N A VG+ +EV+ + Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400 >gi|327330240|gb|EGE71989.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL097PA1] Length = 494 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + V +YGCQMNV+DS R+ + GY R +++ AD++V NTC +RE A ++Y Sbjct: 14 YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRESADNRLYGT 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K++ + + V GC+AQ + + ++ R+P V+VV G LP LL+RA Sbjct: 74 LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R V+ + S+ L R +A+++I GC+ CTFC+VP RG E Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R +++ E R L++ GV EITLLGQNVN++ G+ G++ F+ LL + I GL Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I+A + +MP LH+P+QSGSD +L+ M R + + ++ I+DR Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P AI++D IVGFPGETD DF TM +V++ ++ AF+F+YS R TP M +Q Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 361 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 V + V ER L + + + N A VG+ +EV+ + Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400 >gi|289427275|ref|ZP_06428991.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes J165] gi|289159744|gb|EFD07932.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes J165] Length = 497 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + V +YGCQMNV+DS R+ + GY R +++ AD++V NTC +RE A ++Y Sbjct: 17 YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 76 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K++ + + V GC+AQ + + ++ R+P V+VV G LP LL+RA Sbjct: 77 LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 132 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R V+ + S+ L R +A+++I GC+ CTFC+VP RG E Sbjct: 133 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R +++ E R L++ GV EITLLGQNVN++ G+ G++ F+ LL + I GL Sbjct: 188 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 244 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I+A + +MP LH+P+QSGSD +L+ M R + + ++ I+DR Sbjct: 245 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 304 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P AI++D IVGFPGETD DF TM +V++ ++ AF+F+YS R TP M +Q Sbjct: 305 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 364 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 V + V ER L + + + N A VG+ +EV+ + Sbjct: 365 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 403 >gi|295130577|ref|YP_003581240.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes SK137] gi|291375467|gb|ADD99321.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes SK137] Length = 497 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + V +YGCQMNV+DS R+ + GY R +++ AD++V NTC +RE A ++Y Sbjct: 17 YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 76 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K++ + + V GC+AQ + + ++ R+P V+VV G LP LL+RA Sbjct: 77 LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 132 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R V+ + S+ L R +A+++I GC+ CTFC+VP RG E Sbjct: 133 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R +++ E R L++ GV EITLLGQNVN++ G+ G++ F+ LL + I GL Sbjct: 188 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 244 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I+A + +MP LH+P+QSGSD +L+ M R + + ++ I+DR Sbjct: 245 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 304 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P AI++D IVGFPGETD DF TM +V++ ++ AF+F+YS R TP M +Q Sbjct: 305 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 364 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 V + V ER L + + + N A VG+ +EV+ + Sbjct: 365 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 403 >gi|289425065|ref|ZP_06426842.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes SK187] gi|289154043|gb|EFD02731.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes SK187] Length = 497 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 234/399 (58%), Gaps = 17/399 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + V +YGCQMNV+DS R+ + GY R +++ AD++V NTC +RE A ++Y Sbjct: 17 YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 76 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K++ + + V GC+AQ + + ++ R+P V+VV G LP LL+RA Sbjct: 77 LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 132 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R V+ + S+ L R +A+++I GC+ CTFC+VP RG E Sbjct: 133 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 187 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R +++ E R L++ GV EITLLGQNVN++ G+ G++ F+ LL + I GL Sbjct: 188 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 244 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I+A + +MP LH+P+QSGSD +L+ M R + + ++ I+DR Sbjct: 245 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 304 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P AI++D IVGFPGETD DF TM +V++ ++ AF+F+YS R TP M +Q Sbjct: 305 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTPAGVMKDQ 364 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 V + V ER L + + + N A VG+ +EV+ + Sbjct: 365 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 403 >gi|167765542|ref|ZP_02437606.1| hypothetical protein CLOSS21_00036 [Clostridium sp. SS2/1] gi|167712727|gb|EDS23306.1| hypothetical protein CLOSS21_00036 [Clostridium sp. SS2/1] Length = 497 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 158/449 (35%), Positives = 257/449 (57%), Gaps = 26/449 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GCQMN DS ++ + + GYE V + ++AD ++ NTC +RE A K+Y LG+++ Sbjct: 64 VTTFGCQMNEKDSEKLLGILETIGYEEVET-EEADFLIFNTCTVRENANTKLYGHLGQVK 122 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +K + +++ + GC+ Q E E+I V+++ G ++L ELL +AR Sbjct: 123 KMK----ERNPQMMIGLCGCMMQEEHVIEKIRSSYKFVDIIFGTHNIFKLAELL-KARVD 177 Query: 147 KRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + + DTD VED +RK + I GC+ FC++C+VPY RG Sbjct: 178 SKGMIVDIWKDTDQIVEDL---------PSDRKFSFKCGVNIMYGCNNFCSYCIVPYVRG 228 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR ++ E ++++ GV E+ LLGQNVN++ GK L+ E +F++LL + +++GL Sbjct: 229 RERSRKPEDIIKEVKQVVSEGVKEVMLLGQNVNSY-GKTLE-EPMSFAELLREVEKVEGL 286 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ T HP+D+SD LI+ + ++HLP+QSGS R+LK MNR +T +Y + Sbjct: 287 ERIRFMTPHPKDLSDDLIEVMATSKKVCKHMHLPMQSGSSRLLKLMNRHYTKEQYVALAK 346 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +I+ P ++ ++D IVGFPGET++DF+ T+D+V ++G+ A+++ YS R GTP ++M + Sbjct: 347 KIQERIPGVSFTTDIIVGFPGETEEDFKETLDVVREVGFDSAYTYVYSKRSGTPAASMED 406 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439 QVD++V +R L L+E VG I VLIE+ E+G L GR V Sbjct: 407 QVDKDVIKDRFDRLLALLKETSAKNCKKKVGDIERVLIEEENTHEEGMLTGRLENNLLVH 466 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V++ + K GE + Sbjct: 467 FKGCKEQIGTMADVKLVEEKGFYYMGEQI 495 >gi|167771421|ref|ZP_02443474.1| hypothetical protein ANACOL_02787 [Anaerotruncus colihominis DSM 17241] gi|167666061|gb|EDS10191.1| hypothetical protein ANACOL_02787 [Anaerotruncus colihominis DSM 17241] Length = 457 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 164/451 (36%), Positives = 249/451 (55%), Gaps = 21/451 (4%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P +V S+GCQ N D ++ M GY ++ + ADL++ NTC +RE A ++V+ Sbjct: 18 PPMAYVHSFGCQQNQSDGEKIAGMLAQMGYGFTDAPEQADLVIYNTCAVRENAEDRVFGN 77 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCV--AQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 +G +++ K R +L+ + GC+ QA ++I + P V++V G + LPELL Sbjct: 78 VGALKSAKKRR----AGMLIGLCGCMMQQQAVADKIKKSYPYVDLVFGTHALHTLPELLY 133 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRG 200 R G+ + +S E+ R I++G R+ G + A L + GCD FCT+C+VPY RG Sbjct: 134 RRLLGE---NRQFSTENA--RGEIIEGVPLRRSGSIKANLPVMYGCDNFCTYCIVPYVRG 188 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR+ V++EAR L+ G E+ LLGQNVN++ GKGL E F+ LL ++EI+ Sbjct: 189 RERSRNPGDVLNEARALVGQGYRELLLLGQNVNSY-GKGLS-EPINFAALLRRVNEIEDD 246 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R+ TSHP+D + LI + + ++HLPVQSGSDRIL +MNR +T Y ++ID Sbjct: 247 FWIRFMTSHPKDCTHELIDTIAACNKVCRHIHLPVQSGSDRILAAMNRHYTVAHYLELID 306 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+ P + SSD IVGFPGET DF T++L+ ++ + ++F YSPR GT + M Sbjct: 307 YARARIPGVTFSSDIIVGFPGETRADFEQTLELIKRVRFNALYTFIYSPRPGTKAAGM-- 364 Query: 381 QVDENVKAERLLCLQKKLREQ---QVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQ 436 D A++ L L++ L + + VG + VL E G+ G L GR+ Sbjct: 365 -EDPTPAADKSLWLRELLDAESDIRSGMQADAVGTTLRVLAEGEGRSGDGWLTGRTQGND 423 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 V + IG + V I + L+G L Sbjct: 424 IVEFTAPRAMIGSFVDVTIERAQNWALFGRL 454 >gi|317498496|ref|ZP_07956790.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium 5_1_63FAA] gi|291559009|emb|CBL37809.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [butyrate-producing bacterium SSC/2] gi|316894189|gb|EFV16377.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium 5_1_63FAA] Length = 470 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 158/449 (35%), Positives = 257/449 (57%), Gaps = 26/449 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GCQMN DS ++ + + GYE V + ++AD ++ NTC +RE A K+Y LG+++ Sbjct: 37 VTTFGCQMNEKDSEKLLGILETIGYEEVET-EEADFLIFNTCTVRENANTKLYGHLGQVK 95 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +K + +++ + GC+ Q E E+I V+++ G ++L ELL +AR Sbjct: 96 KMK----ERNPQMMIGLCGCMMQEEHVIEKIRSSYKFVDIIFGTHNIFKLAELL-KARVD 150 Query: 147 KRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + + DTD VED +RK + I GC+ FC++C+VPY RG Sbjct: 151 SKGMIVDIWKDTDQIVEDL---------PSDRKFSFKCGVNIMYGCNNFCSYCIVPYVRG 201 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR ++ E ++++ GV E+ LLGQNVN++ GK L+ E +F++LL + +++GL Sbjct: 202 RERSRKPEDIIKEVKQVVSEGVKEVMLLGQNVNSY-GKTLE-EPMSFAELLREVEKVEGL 259 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ T HP+D+SD LI+ + ++HLP+QSGS R+LK MNR +T +Y + Sbjct: 260 ERIRFMTPHPKDLSDDLIEVMATSKKVCKHMHLPMQSGSSRLLKLMNRHYTKEQYVALAK 319 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +I+ P ++ ++D IVGFPGET++DF+ T+D+V ++G+ A+++ YS R GTP ++M + Sbjct: 320 KIQERIPGVSFTTDIIVGFPGETEEDFKETLDVVREVGFDSAYTYVYSKRSGTPAASMED 379 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439 QVD++V +R L L+E VG I VLIE+ E+G L GR V Sbjct: 380 QVDKDVIKDRFDRLLALLKETSAKNCKKKVGDIERVLIEEENTHEEGMLTGRLENNLLVH 439 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V++ + K GE + Sbjct: 440 FKGCKEQIGTMADVKLVEEKGFYYMGEQI 468 >gi|167745633|ref|ZP_02417760.1| hypothetical protein ANACAC_00325 [Anaerostipes caccae DSM 14662] gi|167654945|gb|EDR99074.1| hypothetical protein ANACAC_00325 [Anaerostipes caccae DSM 14662] Length = 470 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 164/453 (36%), Positives = 258/453 (56%), Gaps = 24/453 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P + ++GCQMN DS ++ + + GY + ++ + ADL++ NTC +RE A K+Y Sbjct: 32 PLTCHITTFGCQMNEKDSEKLLGVLETIGYRQTDT-EYADLVLFNTCTVRENANTKLYGH 90 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141 LG ++ K ++ ++++ + GC+ Q E E+I + P V+++ G ++L ELL+ Sbjct: 91 LGHVKKAK----EQNPEMIIGLCGCMMQEEQVVEKIRKSYPFVDLIFGTHNIFKLAELLK 146 Query: 142 -RARFGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 RA G +VD TD VED +RK + I GC+ FC++C+VP Sbjct: 147 ARADSGGMIVDIWKDTDQIVEDL---------PSDRKFSFKCGVNIMFGCNNFCSYCIVP 197 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 Y RG E SR ++ E L+ GV E+ LLGQNVN++ GK LD E +F+ LL + + Sbjct: 198 YVRGRERSRKPEDIIREIEGLVQEGVREVMLLGQNVNSY-GKNLD-EPVSFAQLLQKIEQ 255 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I+GL R+R+ T HP+D+SD LI+ + ++HLPVQSGS RILK MNR +T Y Sbjct: 256 IEGLARIRFMTPHPKDLSDELIEVMASSKKICRHMHLPVQSGSSRILKKMNRHYTKESYL 315 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 + ++I+ P IA+++D IVGFPGET++DF T+D+V K+ + A++F YS R GTP + Sbjct: 316 ALAEKIKEKIPGIAMTTDIIVGFPGETEEDFEETLDVVRKVKFDSAYTFVYSKRTGTPAA 375 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG-QIIEVLIEKHGKEKGKLVGRSPWL 435 +M +QV+ V +R L + ++E +G + ++ EK+ E G + GR Sbjct: 376 SMEDQVEPEVVKKRFSRLLEVIKESSKDNRKDGIGKEEEVLVEEKNTHEDGMVTGRLSNN 435 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V IG +++V+IT+ K GE V Sbjct: 436 ILVHFKGDESLIGQLVRVKITEEKGFYYMGEQV 468 >gi|229890692|sp|A7GZE1|MIAB_CAMC5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 433 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 160/449 (35%), Positives = 249/449 (55%), Gaps = 20/449 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + ++ F+++ GC MNV DS + ++ + Y ++++ADLI++NTC +REK K++ Sbjct: 1 MSKKLFIQTLGCAMNVRDSEHIIAELSQKEDYTLTQNLEEADLILINTCSVREKPVHKLF 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S +G K + K G V GC A G+EI +R+P V+ V+G + ++ ++ Sbjct: 61 SEVGAFEKAKKNGAKIG------VCGCTASHLGDEIFKRAPYVDFVLGARNVSKISTAVK 114 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +F ++ D S E F G R + + I GCDK CT+C+VP+TRG Sbjct: 115 TPKFISTDINHDES-EYAF--------GEFRGSPYKSHINISIGCDKKCTYCIVPHTRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKG 259 EIS + ++ E K NG EI LLGQNVN + GK G EK FSDLL +SE+ G Sbjct: 166 EISIPANLILREVEKAATNGAKEIFLLGQNVNNY-GKRFSGAHEKIDFSDLLVRISEVAG 224 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+T+ HP M D ++ + +H+P+QSG+ ++L+ M R +T + Sbjct: 225 VERIRFTSPHPLHMDDKFLEIFSQNPKICKSMHMPLQSGNTKVLREMKRGYTKEWFLDRA 284 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R + PD++IS+D IV FPGE+D +F TMD+++++ + Q FSFKYSPR T + Sbjct: 285 AKLREMCPDVSISTDIIVAFPGESDAEFEDTMDVLERVKFEQIFSFKYSPRPMTKAAEFT 344 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 Q+DE + RL LQ + E A G+I++V E+ + G + GRS V Sbjct: 345 NQIDEATASARLTRLQSRHNEILDEIVAAQEGKILDVYFEEL-RANGGVAGRSFNNFLVQ 403 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 +N +G +KV+ITD K LYGEL Sbjct: 404 VNGSEELLGRTLKVKITDTKRMVLYGELA 432 >gi|303236111|ref|ZP_07322713.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella disiens FB035-09AN] gi|302483693|gb|EFL46686.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Prevotella disiens FB035-09AN] Length = 443 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 157/450 (34%), Positives = 263/450 (58%), Gaps = 15/450 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV DS + + GY+ ++AD I LNTC IRE A K+Y+ L Sbjct: 2 KKLYIETYGCQMNVADSEVVASVMKMAGYDVCEKEEEADAIFLNTCSIRENAENKIYNRL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + K ++G ++++ V GC+A+ ++++ + N+V GP +Y LPE++ R Sbjct: 62 ETLYAEK----RKGREVILGVLGCMAERVRKDLIE-NHYANLVCGPDSYLNLPEMIARCE 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G +D D S + + + G NR V+ F++I GC+ FC +C+VP+TRG E S Sbjct: 117 NGHNAMDVDLSTTETYRDIVPQRIGGNR---VSGFVSIMRGCNNFCHYCIVPFTRGRERS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----CTFSDLLYSLSEIKGL 260 R + ++ E + L D G E+TLLGQNVN++ G +G++ +F++LL +++ Sbjct: 174 RDVESILREVKDLHDRGFKEVTLLGQNVNSY-GLLPNGKRPENGTSFAELLRKVAQSVPD 232 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R+R++TS+P DM++ ++ A + L ++H P QSGS+++LK MNR++T +Y + + Sbjct: 233 MRVRFSTSNPEDMTEDILHAVAEEPNLCNHIHFPAQSGSNKVLKDMNRKYTREDYLEKVA 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379 IR + P+ +++D VG+ ET +D T+ LV + + AF FKYS R GT + L Sbjct: 293 AIRRIIPNCGLTTDIFVGYHDETLEDQELTLSLVRECQFDSAFMFKYSERPGTYAAKHLP 352 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 + V E K RL L K E N G+ ++LIE+ K + +L+GR+ ++V Sbjct: 353 DNVSEEEKVRRLNELIKLQTEISAQQNKKDEGKEFDILIERFSKRSREQLMGRTEQNKAV 412 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V+ NH+IG+ ++VRIT +TL GE V Sbjct: 413 VIPRGNHHIGETVRVRITSSSSATLIGEAV 442 >gi|255323483|ref|ZP_05364614.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter showae RM3277] gi|255299520|gb|EET78806.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter showae RM3277] Length = 436 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 161/447 (36%), Positives = 249/447 (55%), Gaps = 20/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS + ++ + YE + +ADLI++NTC +REK K++S Sbjct: 6 KKLFIQTLGCAMNVRDSEHIIAELKQKEDYELTQDISEADLILINTCSVREKPVHKLFSE 65 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G +K + K G V GC A G EI +R+P V+ ++G + ++ ++ Sbjct: 66 VGGFEKVKKAGAKIG------VCGCTASHLGSEIFKRAPYVDFILGARNVSKISAAVKTP 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +F ++ D S E F G R +++ I GCDK CT+C+VP+TRG EI Sbjct: 120 KFISTDINHDES-EYAF--------GEFRGSPYKSYINISIGCDKKCTYCIVPHTRGDEI 170 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLV 261 S + ++ E +K + G EI LLGQNVN + GK G EK FSDLL +SEI+G+ Sbjct: 171 SIPANLILREVKKAAEGGAKEIFLLGQNVNNY-GKRFSGTHEKIDFSDLLVKISEIEGVE 229 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP M D ++ + +H+P+QSGS ++L+ M R +T + R Sbjct: 230 RIRFTSPHPLHMDDKFLEIFSQNPKICKSMHMPLQSGSTKVLREMKRGYTKEWFLDRAGR 289 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++ P+++IS+D IV FP ETD++F TMD+++K+ + Q FSFKYSPR T + Q Sbjct: 290 LRAMCPEVSISTDIIVAFPSETDEEFEDTMDVLEKVRFEQIFSFKYSPRPMTKAAEFTNQ 349 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + E V + RL LQ + E A G+I +V E+ + G + GRS V + Sbjct: 350 IPEAVASARLTRLQSRHNEILDEIVAAQKGKIFDVYFEEL-RANGGVAGRSFNNFLVQVA 408 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G +KVR+ D K LYGELV Sbjct: 409 GSEELLGKTLKVRVNDPKRMVLYGELV 435 >gi|189485484|ref|YP_001956425.1| hypothetical protein TGRD_481 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|229891020|sp|B1H0D2|MIAB_UNCTG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|170287443|dbj|BAG13964.1| conserved hypothetical protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 418 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 144/442 (32%), Positives = 252/442 (57%), Gaps = 26/442 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + +++ GCQMNV DS + +F + G + N++ +AD+++LNTC +R +A +K +S+LGR Sbjct: 3 YLIETIGCQMNVCDSDMLVSIFSAYGASKANNLSEADVVILNTCSVRSQAEQKAFSYLGR 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 ++ K ++ + +VV GC+A+ G I +R V++++G + ++ A Sbjct: 63 VKEFK----QKNPCIKIVVIGCMAERLGPNIKKRFSSVDLIIGAK------DIGNAALKI 112 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + TDYS + + K + ++TI GCD +C++C VP+ RG E+S + Sbjct: 113 MNLFRTDYSAKKVNSEI---------KSKIVRYITIMRGCDNYCSYCAVPFVRGREVSIN 163 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +V+E ++ NG EI LLGQNVN+++ E F+ L+ + I+ L R+R+ Sbjct: 164 CETIVNECSSMVKNGAREIILLGQNVNSYQY-----EDVNFASLIKKTAAIENLERIRFM 218 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 T+HP+D+SD LIK + P++H+P+QS SD+ILK+MNR+++ Y +I ++R+ Sbjct: 219 TNHPKDLSDDLIKIMATEPKVCPHIHIPMQSASDKILKAMNRKYSYEHYLGLIKKLRTAV 278 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD+++++D IVGFPGETD+DF T+ V I + + F+YSPR T + M++ V Sbjct: 279 PDVSVTTDIIVGFPGETDEDFEDTLKAVKTIRFGGLYVFRYSPRPDTKAAEMIDDVPFEE 338 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 K R + K+ + + +G +VL E+ + G + R+ + V + Sbjct: 339 KKRRHAVVLKESNKISIEIVSEMLGSTQQVLAEEI--KNGIIKARTKNGRKVFAEGRKEY 396 Query: 447 IGDIIKVRITDVKISTLYGELV 468 IG I V I + KI++L+G++V Sbjct: 397 IGKHINVNIKEAKINSLFGDIV 418 >gi|21674804|ref|NP_662869.1| hypothetical protein CT1993 [Chlorobium tepidum TLS] gi|81790619|sp|Q8KB05|MIAB_CHLTE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|21648022|gb|AAM73211.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 444 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 171/454 (37%), Positives = 247/454 (54%), Gaps = 25/454 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P F++ ++GCQMN DS + + ++G+ +AD+++LN+C +RE A E++ + Sbjct: 8 MPSSFYIHTFGCQMNQADSEIVTALLRAEGFVPSADETNADIVLLNSCAVRENAEERLGN 67 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L ++ K R KE L++ V GCV Q E E + P V+ +VGP Y L L+ Sbjct: 68 ILMHLKGRKR-RCKE---LVIGVLGCVPQFERERVFSDYPFVDFIVGPDNYRELAGLVAG 123 Query: 143 ARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R R DY + + + V G ++AFL + GC+ C FCVVP TRG Sbjct: 124 LREAVARPALLDYDQTETYAGIEPVRAG-----SISAFLPVMRGCNNHCAFCVVPVTRGR 178 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKG 259 E S +VV E L G E+TLLGQNVN+WR KGLD F+ LL +S Sbjct: 179 ERSVGFERVVAEVVALEKAGFREVTLLGQNVNSWRDAEKGLD-----FAGLLEGVSLAVP 233 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +R+R+TTSHP+D+S+ L+K L ++HLPVQSGS R+L M R HT EY I Sbjct: 234 SMRIRFTTSHPKDISEALVKVIAARPNLCNHIHLPVQSGSSRMLDLMKRGHTREEYLDRI 293 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NM 378 IRS P++AI++D I GF ET+ D R T+ L++ +GY AF F YS R GT + N+ Sbjct: 294 AMIRSYIPEVAITTDLIAGFCTETEKDHRETLSLMEAVGYDTAFMFHYSVRPGTWAARNL 353 Query: 379 LEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPW 434 + V + VK RL + LQ + + +G+ +EVL E K + L+GR+P Sbjct: 354 PDDVPDTVKKARLQEIIELQNAISREIFQRE---IGKTVEVLAEAESKRSESMLMGRTPE 410 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + VV + N D + V+IT +TL GE V Sbjct: 411 NRVVVFSRGRFNPSDTLLVKITGATSATLSGEAV 444 >gi|331084790|ref|ZP_08333878.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410884|gb|EGG90306.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Lachnospiraceae bacterium 9_1_43BFAA] Length = 491 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 162/437 (37%), Positives = 245/437 (56%), Gaps = 23/437 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GCQMN DS ++ + GY+ + ++AD ++ NTC +RE A +VY LG++ + Sbjct: 61 TFGCQMNARDSEKLLGVLEQIGYQEETNEEEADFVIYNTCTVRENANMRVYGRLGQLNRV 120 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 K K+ +L+ + GC+ Q E+I + V+++ G Y+ EL+ +R Sbjct: 121 K----KQKPHMLIGLCGCMMQEPEVVEKIKKSYRFVDLIFGTHNIYKFAELIVTRLESQR 176 Query: 149 VV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +V DTD VED RK + + I GC+ FC++C+VPY RG E Sbjct: 177 MVIDIWKDTDKIVEDL---------PSERKFSFKSGVNIMFGCNNFCSYCIVPYVRGRER 227 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR+ ++ E + L+ +GV E+ LLGQNVN++ GK L+ TF+ LL + +I+GL R+ Sbjct: 228 SRNPEDIIREIQGLVADGVVEVMLLGQNVNSY-GKTLE-HPMTFAQLLTEIEKIEGLERI 285 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD LI+ + +LHLPVQSGS ILK MNRR+T +Y +++ +I+ Sbjct: 286 RFMTSHPKDLSDELIEVMKHSKKICKHLHLPVQSGSTEILKKMNRRYTKEQYLELVRKIK 345 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PDI++++D IVGFPGET++DF TMD+V K+ Y AF+F YS R GTP + M QV Sbjct: 346 EAVPDISLTTDIIVGFPGETEEDFLETMDVVKKVRYDSAFTFIYSKRTGTPAAAMENQVP 405 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442 E+V +R L K+++ G VL+E LV GR V Sbjct: 406 EDVVKDRFDRLLKEVQSISAEVCSVHEGTTQSVLVEAVNDHDPALVTGRLSNNILVHFPG 465 Query: 443 KNHNIGDIIKVRITDVK 459 + IG I+ VR+ K Sbjct: 466 EKELIGKIVSVRLDACK 482 >gi|255036486|ref|YP_003087107.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dyadobacter fermentans DSM 18053] gi|254949242|gb|ACT93942.1| RNA modification enzyme, MiaB family [Dyadobacter fermentans DSM 18053] Length = 489 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 18/455 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R F++SYGCQMN DS + + G+ + ++DADLI LNTC IR+ A +KV + L Sbjct: 35 KRLFIESYGCQMNFSDSEIVASVMRDAGFATTSDVNDADLIFLNTCAIRDNAEQKVRNRL 94 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ LK K +L+ V GC+A+ + L +V++V GP Y LP L++ A Sbjct: 95 KQLNFLK----KNKPGMLIGVLGCMAERLKTKFLEEEKMVDIVTGPDAYRDLPRLVDEAE 150 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ V+ S E+ + +S + N GVTAF++I GCD C+FCVVP+TRG E S Sbjct: 151 TGQKGVNVFLSREETYADISPIRLNSN---GVTAFISIMRGCDNMCSFCVVPFTRGRERS 207 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-------GLDGEK-CTFSDLLYSLSE 256 R +V EA L +G E+TLLGQNV++++ K GL GE F+ LL +++ Sbjct: 208 RDPYSIVKEAEDLFRDGYREVTLLGQNVDSYKWKPEATAEGGLTGETIVNFAHLLEMVAK 267 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + +R+R++TSHP+D++D ++ D + Y+HLP QSG+ R+L+ MNR +T Y Sbjct: 268 VSPELRIRFSTSHPKDITDEVLYTMKKYDNICKYIHLPAQSGNTRVLEIMNRTYTREWYM 327 Query: 317 QIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + ID IR + D IS D I GF ET+++ R T+ L++ + F F YS R GT Sbjct: 328 ERIDAIRRILGDECGISQDMIAGFCTETEEEHRDTLSLMEYAKFDFGFMFAYSERPGTLA 387 Query: 376 SNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP 433 + + + E+VK RL + + + ++ N VG I VLIE K L GR+ Sbjct: 388 AKKFKDDIPEDVKKRRLAEIIEVQQRLSLARNQQLVGTIQRVLIEGTSKRSDDDLSGRND 447 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + VV +N G + V IT+ TL G +V Sbjct: 448 QNKKVVFPRENFEKGQYVDVLITECTTVTLLGHVV 482 >gi|312880310|ref|ZP_07740110.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aminomonas paucivorans DSM 12260] gi|310783601|gb|EFQ23999.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aminomonas paucivorans DSM 12260] Length = 446 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 169/448 (37%), Positives = 242/448 (54%), Gaps = 23/448 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + YGCQMN YD R+ G+ V D+AD ++ TC IR+KA +KV S LGR Sbjct: 4 FKIDVYGCQMNAYDGDRLRTALSGAGWTEVQGEDEADAVLFVTCSIRDKAEQKVASELGR 63 Query: 87 IRNLKNSRIKEGGDLLVVVA--GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R GG VVA GC+AQ GE+I RR P V ++ GP+ R+PE L R Sbjct: 64 YR-------PGGGRKAPVVALLGCMAQRLGEDIPRRFPWVRLLAGPRHLGRVPEALGRCL 116 Query: 145 FGKRV---VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 ++ +D D + V G + A++TI GCD FC +C+VPY RG Sbjct: 117 EDDQLRVFLDEDPRALEDLRFPPQVTPG-----SIRAYVTIAHGCDHFCAYCIVPYVRGR 171 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 SR ++ E R L D GV EITLLGQNVN + G+D + +F LL ++E+ G+ Sbjct: 172 FQSRDPEAILREVRCLADRGVREITLLGQNVNRF---GVDRSDGFSFPRLLREVAEVPGV 228 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R+RY TSHP D S+ L++ + + P L+LPVQSGSDRIL +M R + YR+ + Sbjct: 229 LRVRYATSHPVDFSEELVRVMAEHPRVCPALNLPVQSGSDRILAAMGRGYDGASYRRSVG 288 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R PD +++D IVGFPGET++DFR ++ L++++ + Q S YS R GT ++ Sbjct: 289 LLRERVPDAGLTTDLIVGFPGETEEDFRESLSLLEELRFDQVHSAAYSVRPGTRAESLPG 348 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVV 439 +D+ + RL + N+ VG+++ VL E K +G GR+P VV Sbjct: 349 HLDQATRMRRLGEVNDLQSRIAREINETYVGRVLPVLAEGPAPKGEGFWQGRTP-QDKVV 407 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467 L G+ I VRI + L GE+ Sbjct: 408 LFPGPATAGEEILVRIVSAETWYLRGEV 435 >gi|330902117|gb|EGH33396.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 294 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 135/293 (46%), Positives = 189/293 (64%), Gaps = 2/293 (0%) Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237 A++++ EGC K+CTFCVVPYTRG E+SR V+ E L +NGV E+TLLGQNVN +RG Sbjct: 1 AYVSVMEGCSKYCTFCVVPYTRGEEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRG 60 Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297 DG +DL+ ++ + G+ R+RYTTSHP + SD LI+AH ++ L+ +LHLPVQS Sbjct: 61 TTHDGRVADLADLIRVVAAVDGIDRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQS 120 Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 GSDRIL +M R HT EY+ + ++R+ P I+ISSDFIVGFPGET+ DF TM L++ + Sbjct: 121 GSDRILAAMKRNHTTLEYKSRLRKLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDV 180 Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417 G+ +FSF YSPR GTP +++ + E +K ERL LQ +L +Q + VG I +L Sbjct: 181 GFDFSFSFVYSPRPGTPAADLKDDTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRIL 240 Query: 418 IEKHG-KEKGKLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468 + + K+ G+L GR+ + V N IG V I D + +L G L+ Sbjct: 241 VTDYSKKDPGELQGRTENNRIVNFRCDNPKLIGQFADVHIDDAQPHSLRGSLL 293 >gi|317472764|ref|ZP_07932076.1| MiaB family RNA modification enzyme [Anaerostipes sp. 3_2_56FAA] gi|316899756|gb|EFV21758.1| MiaB family RNA modification enzyme [Anaerostipes sp. 3_2_56FAA] Length = 470 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 164/453 (36%), Positives = 257/453 (56%), Gaps = 24/453 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P + ++GCQMN DS ++ + + GY + ++ + ADL++ NTC +RE A K+Y Sbjct: 32 PLTCHITTFGCQMNEKDSEKLLGVLETIGYRQTDT-EYADLVLFNTCTVRENANTKLYGH 90 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141 LG ++ K ++ ++++ + GC+ Q E E+I + P V+++ G ++L ELL+ Sbjct: 91 LGHVKKAK----EQNPEMIIGLCGCMMQEEQVVEKIRKSYPFVDLIFGTHNIFKLAELLK 146 Query: 142 -RARFGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 RA G +VD TD VED +RK + I GC+ FC++C+VP Sbjct: 147 ARADSGGMIVDIWKDTDQIVEDL---------PSDRKFSFKCGVNIMFGCNNFCSYCIVP 197 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 Y RG E SR ++ E L+ GV E+ LLGQNVN++ GK LD E +F+ LL + + Sbjct: 198 YVRGRERSRKPEDIIREIEGLVQEGVREVMLLGQNVNSY-GKNLD-EPVSFAQLLQKIEQ 255 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I+GL R+R+ T HP+D+SD LI+ + ++HLPVQSGS RILK MNR +T Y Sbjct: 256 IEGLARIRFMTPHPKDLSDELIEVMASSKKICRHMHLPVQSGSSRILKKMNRHYTKESYL 315 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 + ++I+ P IA+++D IVGFPGET++DF T+D+V K+ + A++F YS R GTP + Sbjct: 316 ALAEKIKEKIPGIAMTTDIIVGFPGETEEDFEETLDVVRKVKFDSAYTFVYSKRTGTPAA 375 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG-QIIEVLIEKHGKEKGKLVGRSPWL 435 M +QV+ V +R L + ++E +G + ++ EK+ E G + GR Sbjct: 376 AMEDQVEPEVVKKRFSRLLEVIKESSKDNRKDGIGKEEEVLVEEKNTHEDGMVTGRLSNN 435 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V IG +++V+IT+ K GE V Sbjct: 436 ILVHFKGDESLIGQLVRVKITEEKGFYYMGEQV 468 >gi|291296231|ref|YP_003507629.1| RNA modification enzyme, MiaB family [Meiothermus ruber DSM 1279] gi|290471190|gb|ADD28609.1| RNA modification enzyme, MiaB family [Meiothermus ruber DSM 1279] Length = 440 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 166/444 (37%), Positives = 251/444 (56%), Gaps = 29/444 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMN YD+ + S G E V+ +AD +++NTC +R K EKV S LG +R Sbjct: 7 TYGCQMNEYDTHLVRSELVSLGAEFVDHWREADFVLVNTCAVRGKPVEKVRSLLGELRKE 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGKRV 149 K R LLV + GC+AQ E + + R V+V++GP + + LE ++RF Sbjct: 67 KEKR-----PLLVGMMGCLAQLEEGQQMARKFEVDVLLGPGALTEIGKALEAKSRFW--- 118 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 D + E+ L G ++AF++I GC+ CT+C+VP TRG E+SR Sbjct: 119 -DLSFR-EELTHHLPPAPQG-----ALSAFVSIIRGCNHHCTYCIVPTTRGPEVSRHPDL 171 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 ++ E +L GV E+TLLGQNVN++ GK G +F++LL ++++ G+ R+++TTSH Sbjct: 172 ILREVEQLKAAGVLEVTLLGQNVNSY-GKDQPGFP-SFAELLRLVAQV-GIPRIKFTTSH 228 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ--IIDRIRSVR- 326 P + +D +I A + + Y+HLPVQSGS+R+L+ M R EYR+ +DRIR++R Sbjct: 229 PVNFTDDVIAAMAETPQICRYIHLPVQSGSNRVLRRMGR-----EYRREWYLDRIRAIRE 283 Query: 327 --PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD+ +S+D IVGFPGET++DF+AT+ L D++ Y A+ F YSPR GTP + + Sbjct: 284 AMPDVVLSTDIIVGFPGETEEDFQATLSLYDEVRYDSAYMFIYSPRPGTPSYKHFQDLPR 343 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL L +K +E N VGQ +EVL+ K+ + G + +L + Sbjct: 344 EVKVERLQRLIEKQKEWSYRQNQRWVGQTVEVLVRGAAKDDSFVEGHTRGNHPTLLPAAQ 403 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 + + I L GE+V Sbjct: 404 APRPGLYQAVIQQATPHMLLGEVV 427 >gi|313681425|ref|YP_004059163.1| tRNA-i(6)a37 thiotransferase enzyme miab [Sulfuricurvum kujiense DSM 16994] gi|313154285|gb|ADR32963.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfuricurvum kujiense DSM 16994] Length = 433 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 161/447 (36%), Positives = 247/447 (55%), Gaps = 18/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS M ++ +GYE + ADLI++NTC +REK K++S Sbjct: 3 KKLFIETLGCAMNVRDSEHMIAELNAHEGYELTDDAASADLILINTCSVREKPVHKLFSE 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG LK + K G V GC A G+EI++R+P VN V+G + ++ ++L R Sbjct: 63 LGVFNKLKKADAKIG------VCGCTASHLGKEIIKRAPYVNFVLGARNVSKIADVLHRD 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R + +D D E +F Y A++ I GCDK CTFC+VP TRG EI Sbjct: 117 RAVEVEIDYD---ESQFAFKDFRSSPYK------AYINISIGCDKQCTFCIVPKTRGDEI 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 S +V E RK ++NG E+ LLGQNVN + + D +K F++LL +S ++GL R Sbjct: 168 SIPPDLIVAEVRKAVENGAKEVFLLGQNVNNYGRRFSDVNDKMNFTELLRRVSAVEGLER 227 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP M D ++ + +H+P+QSGS ILK+M R +T + ++ Sbjct: 228 IRFTSPHPFHMDDEFLEEFARNPKICKSMHMPLQSGSTDILKAMKRGYTKEWFLNRARKL 287 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + PD++IS+D IV FPGE+D DF T+D++ ++ + Q FSFKYSPR T + V Sbjct: 288 RELVPDVSISTDIIVAFPGESDADFEDTLDVMKEVRFEQVFSFKYSPRPLTEAESFTNVV 347 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 D + + RL LQ S + +G+ +V E+ + G + GRS + + Sbjct: 348 DSELGSFRLSTLQAYQDTILDSISAGLLGKEYDVYFEEL-RSDGYVAGRSDNNIMIKVKG 406 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 +G I +V+IT+V S YGE++ Sbjct: 407 SEEWLGKIARVKITEVSRSVQYGEIIA 433 >gi|330466440|ref|YP_004404183.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Verrucosispora maris AB-18-032] gi|328809411|gb|AEB43583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Verrucosispora maris AB-18-032] Length = 491 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 156/416 (37%), Positives = 233/416 (56%), Gaps = 32/416 (7%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDA-DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MNV+DS R+ + GY R DD+ D++V NTC +RE A ++Y LG +R +K+ Sbjct: 1 MNVHDSERISGLLEQAGYVRAGESDDSPDVVVFNTCAVRENADNRLYGNLGHLRPVKDRH 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154 + + V GC+AQ + +I+R++P V+VV G LP LLERAR + Sbjct: 61 PG----MQIAVGGCLAQKDRGDIVRKAPWVDVVFGTHNIGSLPVLLERARH-----NAAA 111 Query: 155 SVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 VE E L + +R T +++I GC+ CTFC+VP RG E R ++ Sbjct: 112 EVE-ILESLDVFPSTLPTRRESTYAGWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILS 170 Query: 213 EARKLIDNGVCEITLLGQNVNA------------WRGKGLDGEKCTFSDLLYSLSEIKGL 260 E R L+D GV E+TLLGQNVN+ W+ G + F+ LL + +I GL Sbjct: 171 EVRALVDEGVLEVTLLGQNVNSYGVAFGDAGEPNWK---RSGGRSAFAQLLRACGDIDGL 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+T+ HP+D +D +I A + + LH+P+QSGSD +L++M R + A Y IID Sbjct: 228 ERVRFTSPHPKDFTDDVIAAMAETPNVCHSLHMPLQSGSDDVLRAMRRSYRAERYLGIID 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R+ PD AI++D IVGFPGET+ DF T+D+V ++ AF+F+YS R GTP + M Sbjct: 288 KVRAAMPDAAITTDIIVGFPGETEADFERTLDVVRAARFSSAFTFQYSKRPGTPAATMDG 347 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KHGKEKGKLVGRS 432 Q+ + V ER L + E + N VG+ +EVL+ + + G+L GR+ Sbjct: 348 QLPKQVVQERYERLIACVEEITWAENKKLVGEAVEVLVAVGEGRKDERTGRLSGRA 403 >gi|283955880|ref|ZP_06373370.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni 1336] gi|283792540|gb|EFC31319.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni 1336] Length = 433 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 162/447 (36%), Positives = 247/447 (55%), Gaps = 20/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS M ++ + Y + +ADLI++NTC +REK K++S Sbjct: 4 KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G +K KEG + V GC A G EI +R+P V+ V+G + ++ + ++ Sbjct: 64 VGGFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +F VD DY E +F + Y +++ I GCDK CT+C+VP+TRG EI Sbjct: 118 KFMG--VDIDYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261 S + + EA+K ++ G EI LLGQNVN + GK E K FSDLL LS I+GL Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEGLE 227 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP M D +K + + +H+P+QSGS ILK+M R +T Y + Sbjct: 228 RIRFTSPHPLHMDDKFLKVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALK 287 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R + P+++IS+D IV FPGE++ DF TMD+++K+ + Q FSFKYS R T + M Q Sbjct: 288 LRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQ 347 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 +DE + RL LQ + E + +VL E+ + + GR+ V + Sbjct: 348 IDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVE 406 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G +V+IT+ K LYGE+V Sbjct: 407 GSEELLGQFKEVKITNAKRMVLYGEIV 433 >gi|269926079|ref|YP_003322702.1| RNA modification enzyme, MiaB family [Thermobaculum terrenum ATCC BAA-798] gi|269789739|gb|ACZ41880.1| RNA modification enzyme, MiaB family [Thermobaculum terrenum ATCC BAA-798] Length = 432 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 160/442 (36%), Positives = 248/442 (56%), Gaps = 24/442 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F++ + GCQMNV DS R D GY+ N +AD+I+LNTC +RE A + + LG Sbjct: 6 FYIWTVGCQMNVADSRRAADALKHSGYKETNKPSEADVIILNTCSVRESAERRTWGKLGA 65 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + LK R D ++V+ GC+ ++ + R+ P+V+ V + ELL Sbjct: 66 LSQLKRQR----PDTIIVMMGCMVHSDTALLHRQFPLVDHFVPAGD---IDELLASIP-- 116 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 VED++ + D + GVTAF+ + GC+KFCTFCVVPY RG E S Sbjct: 117 --------PVEDEWG-TQLYD--LSSASGVTAFVPVIMGCNKFCTFCVVPYRRGRERSIP 165 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + VV+E R L D GV E+TLLGQ +N + GK L + +DLLY++ E+ G+ R+R+ Sbjct: 166 IPDVVEEVRFLADRGVKEVTLLGQTINHY-GKDLPN-RPDLADLLYAVHEVPGIERIRFL 223 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TS+PR M+D ++ A DL + ++++P Q+G + +L++M R +T +Y +IDR+RS+ Sbjct: 224 TSYPRTMTDKILHAVADLPKVCEHINIPFQAGDNDVLRAMRRGYTIEQYIDLIDRVRSII 283 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P ++I++D IVGFP ET++ F+ T D+++++ Q YSPR GT M + + Sbjct: 284 PGVSIATDIIVGFPNETEEKFQKTYDVLEQLRLDQVHIACYSPRPGTKAYEMGDPIPLEE 343 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 K R L+++ N G I EVL E+ K+KGK GR+ + V ++S+ Sbjct: 344 KQRRFRILEEQHERISAEINKQLEGTIQEVLFEE--KQKGKWKGRTRTNKLVFVDSEEDL 401 Query: 447 IGDIIKVRITDVKISTLYGELV 468 G + VRIT ++ ELV Sbjct: 402 TGKTLPVRITHTTAWSMQAELV 423 >gi|255656429|ref|ZP_05401838.1| putative radical SAM superfamily protein [Clostridium difficile QCD-23m63] gi|296450124|ref|ZP_06891885.1| 2-methylthioadenine synthetase [Clostridium difficile NAP08] gi|296878505|ref|ZP_06902510.1| 2-methylthioadenine synthetase [Clostridium difficile NAP07] gi|296260887|gb|EFH07721.1| 2-methylthioadenine synthetase [Clostridium difficile NAP08] gi|296430312|gb|EFH16154.1| 2-methylthioadenine synthetase [Clostridium difficile NAP07] Length = 432 Score = 268 bits (686), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 162/446 (36%), Positives = 259/446 (58%), Gaps = 29/446 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M ++F GYE+VNS + AD+ V+NTC + + K ++ R++ Sbjct: 8 TLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVK-- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K+ D ++ V GC +Q EEIL VN+V+G ++ E +++ K+V Sbjct: 66 -----KKNPDAIIAVVGCYSQVSPEEILDIEE-VNLVMGTNDRRKIVEEIKKINSSKKVS 119 Query: 151 DTDYSVEDK-FERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 D ++ K FE + I ++ G T AF+ IQ+GCD+FCT+C++PY RG SR + Sbjct: 120 TVDDIMKVKAFEEIEI-----SQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDID 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VDE +KL +NG E+ L G +V ++ GK L D++ +++I+ + R+R ++ Sbjct: 175 SIVDEVKKLANNGYKEVVLTGIHVASY-GKDLKDRDIKLLDVIKQINKIEKIERIRLSSV 233 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P +D + +D + P+ HL +QSG D LK MNRR+T EY+ I+DR+RS PD Sbjct: 234 EPILFTDEFVNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPD 293 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK- 387 +AI++D IVGFPGET+++F+ T + + +I +Q FKYSPR GTP + M QVD +K Sbjct: 294 VAITTDVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVDPQMKH 353 Query: 388 --AERLLCLQKKLREQQVSFNDAC---VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 +E+LL L K V+FN +G+ ++VL E++ E K G + VV+ S Sbjct: 354 FRSEQLLNLSK------VNFNKFATKFIGRKLDVLFEQNL-EGNKYEGLTSNYIRVVVES 406 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 + G I+KV+I DVK + G L+ Sbjct: 407 DKNIQGQILKVKINDVKDEYVEGILL 432 >gi|193211917|ref|YP_001997870.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobaculum parvum NCIB 8327] gi|229890476|sp|B3QR49|MIAB_CHLP8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|193085394|gb|ACF10670.1| RNA modification enzyme, MiaB family [Chlorobaculum parvum NCIB 8327] Length = 443 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 162/455 (35%), Positives = 250/455 (54%), Gaps = 33/455 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF+ ++GCQMN+ D+ + + G+ AD+++LNTC +R A ++ + L Sbjct: 5 FFIHTFGCQMNMADTEIVTAILVEGGFAPAEDEGTADMVLLNTCAVRANAVDRAGNVLSH 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 ++ +K R L+V + GCV Q E E++ P V+ +VGP Y L ++ R G Sbjct: 65 LKGMKRRR----KGLVVGLLGCVPQYEREQLFGDFPFVDFIVGPDNYRDLCGIVRSVREG 120 Query: 147 -KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +R DY ++ + + + R V+ FL + GC+ C FCVVP TRG E S Sbjct: 121 EQRRAFIDYDQQETYAGIDPI-----RANRVSTFLPVMRGCNNHCAFCVVPVTRGRERSV 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 + +V+ E L G E+TLLGQNVN+W K LD F+ LL +S +R+ Sbjct: 176 AFDRVIAEVAALEQAGYREVTLLGQNVNSWCDADKSLD-----FAGLLEGVSHAAPSMRI 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+TTSHP+D+S+ L++ G+ L ++HLPVQSGS R+L M R HT EY I IR Sbjct: 231 RFTTSHPKDISESLVRVIGERPNLCKHIHLPVQSGSSRMLDLMKRGHTREEYLDKIAMIR 290 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQV 382 + P +AI++D I GF ET+ D R T+ L++ +GY AF F YS R GT + N+ + V Sbjct: 291 ELVPGVAITTDLIAGFCTETEVDHRETLSLMEAVGYDTAFMFYYSVRPGTWAARNLPDDV 350 Query: 383 DENVKAERL-------LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPW 434 E VK RL + ++L +++ +G+++EVL E K +L+GR+ Sbjct: 351 PEAVKKARLQEIIDLQTAMSRELYQRE-------IGKVVEVLAEAESKRSASQLMGRTSE 403 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 ++VV + ++ GD++ VRIT +TL GE +V Sbjct: 404 NRAVVFSREHFMPGDLVPVRITAATSATLSGEALV 438 >gi|167465242|ref|ZP_02330331.1| tRNA 2-methylthioadenosine synthase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 376 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 156/376 (41%), Positives = 223/376 (59%), Gaps = 12/376 (3%) Query: 97 EGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154 E +L++ V GC++Q E IL++ V+++ G +RLP LL+ A F K +V + Sbjct: 1 EKPNLILGVCGCMSQEEAVINLILQKHAFVDLIFGTHNIHRLPFLLQDAYFSKEMVVEVW 60 Query: 155 SVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 S E D E L + GG + A++ I GCDKFCT+C+VPYTRG E SR V+ E Sbjct: 61 SKEGDIIENLPMKRGG------MRAWVNIMYGCDKFCTYCIVPYTRGKERSRRPQDVIQE 114 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 R+L G EITLLGQNVN + GK D + TF DL+ + +I + R+R+TTSHPRD Sbjct: 115 VRELARQGFKEITLLGQNVNVY-GKDFDDIEYTFGDLMDDIRKID-IPRVRFTTSHPRDF 172 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 D LI+ LM ++HLPVQSG+ ILK M+R++T Y +++ +I+ PD +++ Sbjct: 173 DDRLIEVLAKKGNLMEHIHLPVQSGNTEILKKMSRKYTRERYLELVGKIKEAIPDAVLTT 232 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 D IVGFPGETD+ F T+ LV ++ Y AF+F YSPR GTP ++M + + VK ERL Sbjct: 233 DIIVGFPGETDEQFEDTLSLVKEVKYDSAFTFIYSPREGTPAASMEDNIPMEVKKERLAR 292 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNHNIGDIIK 452 L + L E N GQ++EVL+E K+ K L GR+ + V IG+ + Sbjct: 293 LNEVLAEFSKESNWELKGQVLEVLVEGQSKKNAKVLSGRTRTNKLVHFEGSKDLIGEFVH 352 Query: 453 VRITDVKISTLYGELV 468 V+IT+ + L GE+V Sbjct: 353 VKITEPQTWLLKGEIV 368 >gi|291550415|emb|CBL26677.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus torques L2-14] Length = 482 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 164/462 (35%), Positives = 259/462 (56%), Gaps = 39/462 (8%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 V+++ ++ P V ++GCQMN DS ++ + GY + AD ++ NTC +R Sbjct: 33 VAEMSEKLGRPLTACVTTFGCQMNSRDSEKLLGILEKVGYAEETDEEKADFVIYNTCTVR 92 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQ 131 E A +VY LG++ ++K K+ ++ + GC+ Q E E L++S V+++ G Sbjct: 93 ENANLRVYGRLGQLGSIK----KKNPHKMIALCGCMMQEPEVVEKLKKSYRFVDLIFGTH 148 Query: 132 TYYRLPELLERARFGKRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186 Y+ ELL A R V DTD VED V+ Y K GV GC Sbjct: 149 NIYKFAELLTSAIQSDRTVIDIWKDTDKIVED-----LPVERKYPFKSGVNIMF----GC 199 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246 + FC++C+VPY RG E SR ++ E +L+ +GV E+ LLGQNVN++ GK L+ E T Sbjct: 200 NNFCSYCIVPYVRGRERSREPKAIIREIERLVADGVVEVMLLGQNVNSY-GKNLE-EPMT 257 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F+ LL + +I+GL R+R+ TSHP+D+SD LI+ + +LHLPVQSGS RILK M Sbjct: 258 FAQLLQEIEKIEGLERIRFMTSHPKDLSDELIEVMSKSKKICKHLHLPVQSGSSRILKLM 317 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 NR + +Y + ++IR PD+++++D IVGFPGET++DF+ T+D+V K+ Y AF+F Sbjct: 318 NRHYDKEQYLALAEKIRKAVPDLSLTTDIIVGFPGETEEDFQETLDVVRKVRYDSAFTFI 377 Query: 367 YSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-- 421 YS R GTP + M +Q+ E+V + RLL + + +Q + ++ V ++ + +H Sbjct: 378 YSKRTGTPAAVMEDQIPEDVVKDRFNRLLHEVQTISAEQCAIHEGTVQTVLVECVNEHDH 437 Query: 422 ----GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459 G+ L+ P +S+ IG ++ V + + K Sbjct: 438 HLMTGRMSNNLLVHFPGDESL--------IGQLVDVHLDECK 471 >gi|126700065|ref|YP_001088962.1| putative radical SAM superfamily protein [Clostridium difficile 630] gi|254976042|ref|ZP_05272514.1| putative radical SAM superfamily protein [Clostridium difficile QCD-66c26] gi|255093430|ref|ZP_05322908.1| putative radical SAM superfamily protein [Clostridium difficile CIP 107932] gi|255101608|ref|ZP_05330585.1| putative radical SAM superfamily protein [Clostridium difficile QCD-63q42] gi|255307477|ref|ZP_05351648.1| putative radical SAM superfamily protein [Clostridium difficile ATCC 43255] gi|255315175|ref|ZP_05356758.1| putative radical SAM superfamily protein [Clostridium difficile QCD-76w55] gi|255517844|ref|ZP_05385520.1| putative radical SAM superfamily protein [Clostridium difficile QCD-97b34] gi|255650960|ref|ZP_05397862.1| putative radical SAM superfamily protein [Clostridium difficile QCD-37x79] gi|260684029|ref|YP_003215314.1| putative radical SAM superfamily protein [Clostridium difficile CD196] gi|260687689|ref|YP_003218823.1| putative radical SAM superfamily protein [Clostridium difficile R20291] gi|306520839|ref|ZP_07407186.1| putative radical SAM superfamily protein [Clostridium difficile QCD-32g58] gi|115251502|emb|CAJ69335.1| putative MiaB-like tRNA modifying enzyme [Clostridium difficile] gi|260210192|emb|CBA64398.1| putative radical SAM superfamily protein [Clostridium difficile CD196] gi|260213706|emb|CBE05587.1| putative radical SAM superfamily protein [Clostridium difficile R20291] Length = 432 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 162/446 (36%), Positives = 259/446 (58%), Gaps = 29/446 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M ++F GYE+VNS + AD+ V+NTC + + K ++ R++ Sbjct: 8 TLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVK-- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K+ D ++ V GC +Q EEIL VN+V+G ++ E +++ K+V Sbjct: 66 -----KKNPDAIIAVVGCYSQVSPEEILDIEE-VNLVMGTNDRRKIVEEIKKINSSKKVS 119 Query: 151 DTDYSVEDK-FERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 D ++ K FE + I ++ G T AF+ IQ+GCD+FCT+C++PY RG SR + Sbjct: 120 TVDDIMKVKAFEEIEI-----SQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDID 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VDE +KL +NG E+ L G +V ++ GK L D++ +++I+ + R+R ++ Sbjct: 175 SIVDEVKKLANNGYKEVVLTGIHVASY-GKDLKDRDIKLLDVIKQINQIEKIERIRLSSV 233 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P +D + +D + P+ HL +QSG D LK MNRR+T EY+ I+DR+RS PD Sbjct: 234 EPILFTDEFVNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPD 293 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK- 387 +AI++D IVGFPGET+++F+ T + + +I +Q FKYSPR GTP + M QVD +K Sbjct: 294 VAITTDVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVDPQMKH 353 Query: 388 --AERLLCLQKKLREQQVSFNDAC---VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 +E+LL L K V+FN +G+ ++VL E++ E K G + VV+ S Sbjct: 354 FRSEQLLNLSK------VNFNKFATKFIGRELDVLFEQNI-EGNKYEGLTSNYIRVVVES 406 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 + G I+KV+I DVK + G L+ Sbjct: 407 DKNIQGQILKVKINDVKDEYVEGILL 432 >gi|283954250|ref|ZP_06371774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni 414] gi|283794268|gb|EFC33013.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni 414] Length = 433 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 162/447 (36%), Positives = 247/447 (55%), Gaps = 20/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS M ++ + Y ++ +ADLI++NTC +REK K++S Sbjct: 4 KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTENIKEADLILINTCSVREKPVHKLFSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G +K KEG + V GC A G EI +R+P V+ V+G + ++ + ++ Sbjct: 64 VGSFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +F VD DY E +F + Y +++ I GCDK CT+C+VP+TRG EI Sbjct: 118 KFMG--VDIDYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261 S + + EA+K ++ G EI LLGQNVN + GK E K FSDLL LS IK L Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIKDLE 227 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP M D ++ + + +H+P+QSGS ILK+M R +T Y + Sbjct: 228 RIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALK 287 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R + P++ IS+D IV FPGE++ DF TMD+++K+ + Q FSFKYS R T + M Q Sbjct: 288 LRELCPNVNISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQ 347 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 +DE + RL LQ + E +I +VL E+ + + GR+ V + Sbjct: 348 IDEETASRRLKILQNRHSEILDEIVKKQENKIFKVLFEEL-RAGNAIAGRTDNNFLVQVE 406 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G +V+IT+ K LYGE+V Sbjct: 407 GSEELLGHFKEVKITNAKRMVLYGEIV 433 >gi|86153933|ref|ZP_01072136.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni HB93-13] gi|157414751|ref|YP_001482007.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni 81116] gi|229890469|sp|A8FKP3|MIAB_CAMJ8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|85842894|gb|EAQ60106.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni HB93-13] gi|157385715|gb|ABV52030.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni 81116] gi|307747390|gb|ADN90660.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Campylobacter jejuni subsp. jejuni M1] gi|315931101|gb|EFV10075.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni 327] Length = 433 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 161/447 (36%), Positives = 247/447 (55%), Gaps = 20/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS M ++ + Y + +ADLI++NTC +REK K++S Sbjct: 4 KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G +K KEG + V GC A G EI +R+P V+ V+G + ++ + ++ Sbjct: 64 VGGFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +F VD DY E +F + Y +++ I GCDK CT+C+VP+TRG EI Sbjct: 118 KFMG--VDIDYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261 S + + EA+K ++ G EI LLGQNVN + GK E K FSDLL LS I+GL Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEGLE 227 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP M D ++ + + +H+P+QSGS ILK+M R +T Y + Sbjct: 228 RIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALK 287 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R + P+++IS+D IV FPGE++ DF TMD+++K+ + Q FSFKYS R T + M Q Sbjct: 288 LRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQ 347 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 +DE + RL LQ + E + +VL E+ + + GR+ V + Sbjct: 348 IDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVE 406 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G +V+IT+ K LYGE+V Sbjct: 407 GSEELLGQFKEVKITNAKRMVLYGEIV 433 >gi|315452658|ref|YP_004072928.1| (Dimethylallyl)adenosine tRNA methylthiotransferase-MiaB [Helicobacter felis ATCC 49179] gi|315131710|emb|CBY82338.1| (Dimethylallyl)adenosine tRNA methylthiotransferase-MiaB [Helicobacter felis ATCC 49179] Length = 434 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 150/443 (33%), Positives = 250/443 (56%), Gaps = 19/443 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++ GC MN DS + GYE +ADLI+LNTC +REK K++S + Sbjct: 6 KKVYIETMGCAMNTRDSQHLLSELHKVGYEESGDPKEADLILLNTCSVREKPERKLFSEI 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G +K + K G V GC A G +IL+++P V+ V+G + ++ +++ R + Sbjct: 66 GHFAKIKKAGAKIG------VCGCSASHMGAQILQKAPSVDFVLGARNVSKISQIIHRPK 119 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + +D D S V G + K + A + I GCDK C++C+VP+TRG EIS Sbjct: 120 AVEVALDHDES--------HYVFG--HSKSALQALINISIGCDKHCSYCIVPHTRGKEIS 169 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRL 263 + ++ EAR ++NG EI LLGQNVN + + D K TF+ LL SL +I+GL R+ Sbjct: 170 IPMDLILQEARYRVENGAKEIILLGQNVNNYGARFSTDHPKVTFTTLLESLCQIEGLKRI 229 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP M D ++ + +H+P+QSGS+ ILK+M R +T Y I+++R Sbjct: 230 RFTSPHPLHMDDAFLECFAKHPQICKSIHIPLQSGSNAILKAMRRGYTKEWYLNRIEKLR 289 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S+ PD+ I +D IVGFPGE++ DF TMD+++++ + +SF YSPR T ++ QV Sbjct: 290 SLVPDVGIGTDIIVGFPGESEVDFEHTMDVLEQVRFDTMYSFIYSPRPLTSAASWDHQVP 349 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + + L LQ++ +E +G++ +VL+E ++G+ GRS + + ++ Sbjct: 350 YEIAQQNLSRLQQRHQEILEQKAKTQLGKVYQVLVE--SIKEGRAQGRSDQGRLLSFEAE 407 Query: 444 NHNIGDIIKVRITDVKISTLYGE 466 +GD+++V + +L G+ Sbjct: 408 GVQVGDLVEVEVRAHHRGSLQGQ 430 >gi|149277185|ref|ZP_01883327.1| 2-methylthioadenine synthetase [Pedobacter sp. BAL39] gi|149232062|gb|EDM37439.1| 2-methylthioadenine synthetase [Pedobacter sp. BAL39] Length = 482 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 165/453 (36%), Positives = 256/453 (56%), Gaps = 15/453 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + QG+E +AD++ +NTC IRE A ++V + L Sbjct: 31 RKLYIESYGCQMNFADSEIVASILKDQGFETTGDYKEADVVFINTCSIRENAEQRVRNRL 90 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + K K L+V V GC+A+ + L +V+VVVGP Y LP+L+ + Sbjct: 91 SQFSAEKRKNPK----LVVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRDLPQLIGQVE 146 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + ++ S E+ + +S V N G+TAF++I GCD C+FCVVP+TRG E S Sbjct: 147 EGHKAINVLLSREETYADISPVRLNGN---GITAFISIMRGCDNMCSFCVVPFTRGRERS 203 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----CTFSDLLYSLSEIKG 259 R ++ EA+ L+D G E+TLLGQNV++++ KG D E+ F+ LL ++ + Sbjct: 204 RDPHSILAEAQDLVDKGYKEVTLLGQNVDSYKWKGADAEEGAEIEVNFAQLLEKVALLSP 263 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +R+R++TSHP+D++D ++ D + Y+HLPVQSGS R+L+ MNR +T Y + Sbjct: 264 ELRVRFSTSHPKDITDEVLYTIAKYDNICNYIHLPVQSGSSRVLELMNRTYTREWYINRV 323 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 D IR + P AISSD I GF ET+++ + T+ ++D +GY AF+F YS R GT + L Sbjct: 324 DAIRRIIPGCAISSDIIAGFCTETEEEHQETLSMMDYVGYDFAFTFSYSERPGTLAARKL 383 Query: 380 E-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQS 437 E + E VK RL + K +E + VG + +L+E K+ K GR+ Sbjct: 384 EDDIPEPVKKRRLAEILLKQQETSLYRLQQFVGTMQRILVEGTSKKSDKDFCGRNDQNAM 443 Query: 438 VVLNS-KNHNIGDIIKVRITDVKISTLYGELVV 469 VV + + G + V + +TL G +VV Sbjct: 444 VVFPAVEGVKAGTYVNVHVDRCTSATLLGTVVV 476 >gi|327450799|gb|EGE97453.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL087PA3] gi|328754218|gb|EGF67834.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Propionibacterium acnes HL087PA1] Length = 494 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 149/399 (37%), Positives = 233/399 (58%), Gaps = 17/399 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGY---ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + V +YGCQMNV+DS R+ + GY R +++ AD++V NTC +RE A ++Y Sbjct: 14 YRVVTYGCQMNVHDSERIAGLLEEAGYVPDPRTDTLAPADVVVFNTCAVRENADNRLYGT 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K++ + + V GC+AQ + + ++ R+P V+VV G LP LL+RA Sbjct: 74 LGHMAAVKSAHPG----MQLAVGGCMAQKDKDTVVARAPWVDVVFGTHNVGSLPVLLKRA 129 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R V+ + S+ L R +A+++I GC+ CTFC+VP RG E Sbjct: 130 RHNATAQVEIEESLVTFPSNLPA-----RRDSAYSAWVSISVGCNNTCTFCIVPQLRGKE 184 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 R +++ E R L++ GV EITLLGQNVN++ G+ G++ F+ LL + I GL Sbjct: 185 TDRRPGEILSEIRALVNEGVQEITLLGQNVNSY---GVQFGDRGAFAKLLRACGNIDGLE 241 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP +D +I+A + +MP LH+P+QSGSD +L+ M R + + ++ I+DR Sbjct: 242 RVRFTSPHPAAFTDDVIEAMAETPNVMPSLHMPLQSGSDEVLRRMRRSYRSTKFLGILDR 301 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P AI++D IVGFPGETD DF TM +V++ ++ AF+F+YS R T M +Q Sbjct: 302 VREAIPHAAITTDIIVGFPGETDKDFAETMRIVEESRFSAAFTFQYSIRPNTSAGVMKDQ 361 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 V + V ER L + + + N A VG+ +EV+ + Sbjct: 362 VPKPVVQERYEQLVELVDDIAWQENKAQVGRAVEVMFAQ 400 >gi|257068238|ref|YP_003154493.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brachybacterium faecium DSM 4810] gi|256559056|gb|ACU84903.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Brachybacterium faecium DSM 4810] Length = 533 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 154/405 (38%), Positives = 244/405 (60%), Gaps = 27/405 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-----DLIVLNTCHIREKAAEKVY 81 + V+++GCQMNV+DS R+ M GY + DA D++V NTC +RE AA K+Y Sbjct: 27 YQVRTFGCQMNVHDSERLTGMLEDSGYVAAPADADARKGEVDVLVFNTCAVRENAANKLY 86 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 LG +R K++ + + V GC+AQ + I+ R+P V+VV G LP LL+ Sbjct: 87 GTLGGLRPGKDANPG----MQIAVGGCLAQKDRAAIVERAPWVDVVFGTHNIGSLPVLLD 142 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTR 199 RAR + + VE E L + +R A+++I GC+ CTFC+VP R Sbjct: 143 RARH-----NAEAQVE-ILESLEVFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPSLR 196 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258 G E R V+ E R ++D+G E+TLLGQNVN++ G++ G++ F+ LL + EI Sbjct: 197 GKEKDRRPGDVLAEVRDVVDSGAIEVTLLGQNVNSY---GVEFGDRGAFAKLLRACGEID 253 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R+T+ HP +D +I A + +MP LH+P+QSGSD++L+ M R + + ++ I Sbjct: 254 GLERVRFTSPHPAMFTDDVIDAMAETPNVMPQLHMPLQSGSDKVLRRMRRSYRSRKFLGI 313 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++R+R P+ AI++D IVGFPGET+DDF+ T+++V+ ++ AF+F+YS R GTP + M Sbjct: 314 LERVRERIPEAAITTDIIVGFPGETEDDFQRTLEVVEASRFSSAFTFQYSIRPGTPAATM 373 Query: 379 LEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 Q+ + V + ERL+ LQ ++ ++ N A G+ +E+L+ + Sbjct: 374 DGQLPKEVVQERFERLIELQDRITFEE---NRALEGRAVEILVAE 415 >gi|281357828|ref|ZP_06244314.1| RNA modification enzyme, MiaB family [Victivallis vadensis ATCC BAA-548] gi|281315775|gb|EFA99802.1| RNA modification enzyme, MiaB family [Victivallis vadensis ATCC BAA-548] Length = 446 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 159/455 (34%), Positives = 250/455 (54%), Gaps = 22/455 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F+K+YGCQMN DS M G+ V+S + AD+++ NTC +RE+A K +G Sbjct: 2 KIFIKTYGCQMNERDSEAFAGMLVEAGHTMVDSEEQADVLLFNTCSVREQAERKAIGKIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 ++ LK +L++ GC+AQ G ++L+ P ++ V+G + L L+E R Sbjct: 62 FMKKLKAKH----PELIIGAMGCMAQRLGNDLLKELPHLDFVLGTGQLHTLVPLIESIRA 117 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRK---RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +R V S+ + L+ + Y R A + I GC++FC++C+VPY RG E Sbjct: 118 DRRQV---ASLNESEAVLTGMGSHYRPAGDVRNWHAQIAITRGCNRFCSYCIVPYVRGRE 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-------KCTFSDLLYSLS 255 ISR VV EAR+L+ G E+ LLGQNV A+ GL G F++LL L Sbjct: 175 ISRDPGDVVREARELVAAGARELMLLGQNVAAY---GLGGNTNPPEDGSSPFAELLEELD 231 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 I L+R+R+T+ +P + LI A + +HLP+QSGSDR+LK+MNR++T Y Sbjct: 232 RIPELLRIRFTSPYPTYFNGRLIDAIAKSRTVCHNIHLPLQSGSDRMLKAMNRQYTHDSY 291 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 ++++RIR+ PD+ S+D IVGFPGETD DF+ T ++++ +G+ +F FKYSPR G Sbjct: 292 LEVVNRIRAAMPDVTFSTDVIVGFPGETDGDFKQTREVMNTVGFDNSFIFKYSPRPGARS 351 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 + + + V + VK ER L L+ + +F +G E+L+E + + GR+ Sbjct: 352 AALADSVPQEVKEERNQILLNDLKLRVEAFLKQQIGTTQEILVEGVSPRNPARWCGRTGT 411 Query: 435 LQSVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + + + G + V +T +L+GELV Sbjct: 412 NRLIHFEPEEGLQAGTLRSVTVTRAGSVSLFGELV 446 >gi|223040820|ref|ZP_03611086.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter rectus RM3267] gi|222877919|gb|EEF13034.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter rectus RM3267] Length = 436 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 159/447 (35%), Positives = 251/447 (56%), Gaps = 20/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS + ++ + YE ++ DADLI++NTC +REK K++S Sbjct: 6 KKLFIQTLGCAMNVRDSEHIIAELSQKEDYELTGNIADADLILINTCSVREKPVHKLFSE 65 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G K + K G V GC A G+EI +R+P V+ V+G + ++ ++ Sbjct: 66 VGAFEKAKKNGAKIG------VCGCTASHLGDEIFKRAPYVDFVLGARNVSKISTAVKTP 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +F ++ D S E F G R + + I GCDK CT+C+VP+TRG EI Sbjct: 120 KFISTDINHDES-EYAF--------GEFRGSPYKSHINISIGCDKKCTYCIVPHTRGDEI 170 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLV 261 S + ++ E +K ++G EI LLGQNVN + GK G EK FSDLL +SEIKG+ Sbjct: 171 SIPANLILREVKKAAESGAKEIFLLGQNVNNY-GKRFSGAHEKIDFSDLLVKISEIKGVE 229 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP M D ++ + +H+P+QSG+ ++L+ M R +T + + Sbjct: 230 RIRFTSPHPLHMDDKFLEIFSQNPKICKSMHMPLQSGNTKVLREMKRGYTKEWFLDRAAK 289 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++ P+++IS+D IV FPGE+D++F TMD+++K+ + Q FSFKYSPR T + Q Sbjct: 290 LRAMCPEVSISTDIIVAFPGESDEEFEDTMDVLEKVRFEQIFSFKYSPRPLTKAAEFTNQ 349 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + +++ + RL LQ + E A +I +V E+ + G + GRS V + Sbjct: 350 IPDSLASARLTRLQSRHNEILDEIVAAQKSKIFDVYFEEL-RANGGVAGRSFNNFLVQVA 408 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G +KVR+ D K LYGELV Sbjct: 409 GSEELLGKTLKVRVNDPKRMVLYGELV 435 >gi|320536571|ref|ZP_08036594.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Treponema phagedenis F0421] gi|320146584|gb|EFW38177.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Treponema phagedenis F0421] Length = 455 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 154/458 (33%), Positives = 259/458 (56%), Gaps = 35/458 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +F ++YGCQMNV +S +E + +G+E+ D DL+++NTC +R A +V+ LG Sbjct: 3 YFFETYGCQMNVAESASVEQLLLKRGWEKAEKADVCDLLIINTCSVRITAETRVFGRLGL 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--AR 144 LK R +++ GC+A+ ++I + P ++ VVG + + + ++ Sbjct: 63 FSALKKKRA-----FSIILMGCMAERLHDKIKKDFPRLDYVVGMFERNQFTAIFKEIESK 117 Query: 145 FGKRVVDTDYSVED---------KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 K +++S ED F S ++G + +F+ I GC+ FCT+C+V Sbjct: 118 LNKTDYHSEFSGEDFLEKPVSGYHFAESSYIEGAFQ------SFIPIMNGCNNFCTYCIV 171 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PY RG EISRSL ++ E +L + GV EITLLGQNVN++RGK +G+ TF +LL ++ Sbjct: 172 PYVRGREISRSLEAILAEVEELSEKGVREITLLGQNVNSYRGKDFEGKLITFPELLRRVA 231 Query: 256 ---EIKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 E K +R +R+ +SHP+D SD LI + + +HLPVQ GS+ +LK MNR +T Sbjct: 232 RVCEKKDSIRWIRFMSSHPKDFSDELITVIAEEPRVCKLIHLPVQHGSNAVLKRMNRSYT 291 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 Y ++D++R+ PD A+S+D ++GFPGE+++DF T+DL+ ++ + AF + Y+PR Sbjct: 292 REHYLSLVDKLRTKVPDSALSTDILIGFPGESEEDFELTLDLMRQVQFDSAFMYHYNPRE 351 Query: 372 GTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GK 427 GT + +++ + V+ RL + LQ K +++ V I+ VL+E + + Sbjct: 352 GTRAYDFPDRIPDAVRIARLQQVIDLQMKTSAEKMRNR---VNHILHVLVESRSRNNPDE 408 Query: 428 LVGRSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTL 463 L G + + + VL + ++IG +KV+I V+ T Sbjct: 409 LFGHTEFGEMAVLTGADPENSIGHFVKVQIQSVQGKTF 446 >gi|315638402|ref|ZP_07893580.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter upsaliensis JV21] gi|315481530|gb|EFU72156.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter upsaliensis JV21] Length = 433 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 157/446 (35%), Positives = 248/446 (55%), Gaps = 18/446 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS + ++ + Y + +ADLI++NTC +REK K++S Sbjct: 4 KKLFIQTLGCAMNVRDSEHIIAELTQKENYSLTEDIKEADLILINTCSVREKPVHKLFSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G +K K G V GC A GEEI RR+P V+ V+G + ++ + ++ Sbjct: 64 VGGFEKVKKKGAKIG------VCGCTASHLGEEIFRRAPYVDFVLGARNISKITQAVKTP 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +F VD DY E +F + Y +++ I GCDK CT+C+VP+TRG EI Sbjct: 118 KFVG--VDLDYD-ESEFAFSDFRNSPYK------SYINISIGCDKHCTYCIVPHTRGDEI 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVR 262 S + +EA+K ++ G EI LLGQNVN + + + +K FSDLL +LSEI+ L R Sbjct: 169 SIPFELIYNEAKKAVEKGAKEIFLLGQNVNNYGKRFRNAHKKMDFSDLLNALSEIENLRR 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP M D ++ + + +H+P+QSGS ILK+M R ++ Y ++ Sbjct: 229 IRFTSPHPLHMDDKFLQTFSQNEKICKAMHMPLQSGSSEILKAMKRGYSKEWYLDRALKL 288 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + D++IS+D IV FPGE++ DF T+D+++K+ + Q FSFKYS R T + M Q+ Sbjct: 289 RELCKDVSISTDIIVAFPGESEKDFEDTLDVLEKVRFEQIFSFKYSKRPLTKAATMQGQI 348 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E++ + RL LQ + E Q EVL E+ + + GR+ V + Sbjct: 349 PEDIASRRLSFLQNRHAEILDEITKKQENQTFEVLFEEL-RANNAVAGRTDNNFLVQIQG 407 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 +G + +V+IT+ K LYGE+V Sbjct: 408 SEEMLGTMKQVKITNAKRMVLYGEIV 433 >gi|313679838|ref|YP_004057577.1| tRNA-i(6)a37 thiotransferase enzyme miab [Oceanithermus profundus DSM 14977] gi|313152553|gb|ADR36404.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oceanithermus profundus DSM 14977] Length = 446 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 159/448 (35%), Positives = 253/448 (56%), Gaps = 35/448 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMN YD+ + S G V+++++A+ +++NTC +R K EKV S LG++R Sbjct: 10 TYGCQMNEYDTHLVASELASIGAAFVDTVEEANFVLVNTCAVRGKPVEKVKSLLGQLRKE 69 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K R KE L+ + GC+A E + + R V+V++G +++ E L A+ G Sbjct: 70 KERR-KE--PFLIGMMGCLASLEEGQAIARKFGVDVLLGAGAIHKIAEAL--AQTG---- 120 Query: 151 DTDYSVEDKFERLSIVDGGYNRK---------RG-VTAFLTIQEGCDKFCTFCVVPYTRG 200 + D G+ R+ RG ++AF+T+ GCD CT+CVVP TRG Sbjct: 121 -------------AFWDVGFYREIDEVVPPPPRGTLSAFVTLIRGCDHRCTYCVVPRTRG 167 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E+SR ++ E +L++ G+ E+TLLGQNVN++ GK D F+DL+ ++ + G+ Sbjct: 168 PEVSRHPDLILREVEQLLEAGIVEVTLLGQNVNSY-GKD-DPAYPDFADLIRRVAAL-GV 224 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR+ TSHP + SD +++A + + Y+HLPVQ+GSDR+L+ M R + Y + + Sbjct: 225 RRLRFVTSHPMNFSDRIVEAIAETPAVGQYVHLPVQAGSDRVLRRMAREYRRDYYLERVA 284 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R PD+ +S+D IVGFPGET++DF+ T+DL D++G+ A+ F YS R GTP E Sbjct: 285 RLREALPDLVLSTDIIVGFPGETEEDFQQTLDLYDEVGFDAAYMFIYSARPGTPSYERFE 344 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 + VK ERL L +K +E + N A VG+ +EVL+ KE + G V+L Sbjct: 345 DLPREVKVERLQRLIEKQKEWSLRRNQAWVGREVEVLVRGPAKEAHWVEGHDQSNHPVLL 404 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + + + + L+G++ Sbjct: 405 PASEAPVAGLYRATVEQATPHLLFGKVA 432 >gi|237751475|ref|ZP_04581955.1| 2-methylthioadenine synthetase [Helicobacter bilis ATCC 43879] gi|229372841|gb|EEO23232.1| 2-methylthioadenine synthetase [Helicobacter bilis ATCC 43879] Length = 444 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 160/449 (35%), Positives = 255/449 (56%), Gaps = 21/449 (4%) Query: 26 RFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++++ GC MNV DS + ++ +GY ++ +ADLI++NTC +REK +K++S + Sbjct: 9 KLYIETLGCAMNVRDSEHIIAELQDKEGYSLTANIQEADLILINTCSVREKPEQKLFSEI 68 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G+ K K G V GC A A G EI+++SP V+ V+G + ++ ++ + + Sbjct: 69 GQFAKHKKDGAKIG------VCGCTASAMGHEIIKKSPHVDFVLGARNISKITSVIHKPK 122 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V+ D S +D S +++ G A L I GCDK C +C+VP+TRG EIS Sbjct: 123 ----AVEIDTSYDDSTYVFS-----DSKQSGFKALLNISIGCDKKCAYCIVPFTRGKEIS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRL 263 + EA KL+ NGV EI LLGQNVN + + EK F+ LL LS+I GL R+ Sbjct: 174 IPFDLLYQEANKLVKNGVKEILLLGQNVNNYGVRFSTPHEKIDFTTLLRELSKIDGLERI 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP M+D + + +H+P+QSGS++ILKSM R +T Y I ++ Sbjct: 234 RFTSPHPLHMNDSFLDEFASNPKICKSIHIPLQSGSNKILKSMKRGYTQEWYLDRIAYLK 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-- 381 P++ IS+D IVGFPGE DDDF+ TM +++ + + +SF YSPR T + ++ Sbjct: 294 KQSPNVGISTDIIVGFPGENDDDFKETMSVLESVRFDTMYSFIYSPRPNTLSHSWGDKDS 353 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWLQSVV 439 V + V ERL LQ++ RE + +G+I +VLI+ + K + GRS + + Sbjct: 354 VPKEVAKERLAILQQRHREILQENSQKELGKIHKVLIDSNKKSLSETFSEGRSDTNRLIR 413 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + ++ ++G I+ + IT V STL+G+ + Sbjct: 414 IENEFIDMGAIVDIEITKVVGSTLFGKSI 442 >gi|57242309|ref|ZP_00370248.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter upsaliensis RM3195] gi|57016989|gb|EAL53771.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter upsaliensis RM3195] Length = 433 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 157/446 (35%), Positives = 248/446 (55%), Gaps = 18/446 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS + ++ + Y + +ADLI++NTC +REK K++S Sbjct: 4 KKLFIQTLGCAMNVRDSEHIIAELTQKENYSLTEDIKEADLILINTCSVREKPVHKLFSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G +K K G V GC A GEEI RR+P V+ V+G + ++ + ++ Sbjct: 64 VGGFEKVKKKGAKIG------VCGCTASHLGEEIFRRAPYVDFVLGARNISKITQAVKTP 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +F VD DY E +F + Y +++ I GCDK CT+C+VP+TRG EI Sbjct: 118 KFVG--VDLDYD-ESEFAFSDFRNSPYK------SYINISIGCDKHCTYCIVPHTRGDEI 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVR 262 S + +EA++ ++ G EI LLGQNVN + + + +K FSDLL SLSEI+ L R Sbjct: 169 SIPFELIYNEAKRAVEKGAKEIFLLGQNVNNYGKRFRNAHKKMDFSDLLNSLSEIENLRR 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP M D ++ + + +H+P+QSGS ILK+M R ++ Y ++ Sbjct: 229 IRFTSPHPLHMDDKFLQTFSQNEKICKAMHMPLQSGSSEILKAMKRGYSKEWYLDRALKL 288 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + D++IS+D IV FPGE++ DF T+D+++K+ + Q FSFKYS R T + M Q+ Sbjct: 289 RELCKDVSISTDIIVAFPGESEKDFEDTLDVLEKVRFEQIFSFKYSKRPLTKAATMQGQI 348 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E++ + RL LQ + E Q EVL E+ + + GR+ V + Sbjct: 349 PEDIASRRLSFLQNRHAEILDEITKKQENQTFEVLFEEL-RANNAVAGRTDNNFLVQIQG 407 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 +G + +V+IT+ K LYGE+V Sbjct: 408 SEEMLGTMKQVKITNAKRMVLYGEIV 433 >gi|284035911|ref|YP_003385841.1| RNA modification enzyme, MiaB family [Spirosoma linguale DSM 74] gi|283815204|gb|ADB37042.1| RNA modification enzyme, MiaB family [Spirosoma linguale DSM 74] Length = 513 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 167/481 (34%), Positives = 259/481 (53%), Gaps = 44/481 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R +++SYGCQMN DS + + + GY +S D+AD+I LNTC IR+ A +KV L Sbjct: 38 KRLYIESYGCQMNFADSEIVAAVMRNAGYATTSSADEADVIFLNTCAIRDNAEQKVRHRL 97 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + LK ++ +LLV + GC+A+ ++L +V++V GP Y +P+L+E A Sbjct: 98 KHLTGLK----RQKPELLVGMLGCMAERLKTKLLEEEKVVDIVAGPDAYRDIPKLVEEAE 153 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ V+ S E+ + +S + N GVTAF++I GCD C+FCVVP+TRG E S Sbjct: 154 SGQKAVNVFLSREETYADISPIRLNSN---GVTAFVSIMRGCDNMCSFCVVPFTRGRERS 210 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKC------------------ 245 R +V EA+ L D G E+TLLGQNV++++ + G+ E+ Sbjct: 211 RDPFSIVREAQDLFDQGYREVTLLGQNVDSYKWELGVRSEELGVADRTGRPASANMDASA 270 Query: 246 ---------------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290 TF+ LL +++I +R+R++TSHP+D++D ++ D + Y Sbjct: 271 TPNSSLLTTNTNTTTTFAHLLEMVAQIHPDLRVRFSTSHPKDITDDVLHTMARYDNICNY 330 Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRA 349 +HLP QSG+ R+LK MNR + Y IDRIR + D IS+D I GF ET+++ + Sbjct: 331 IHLPAQSGNSRVLKLMNRTYDRPWYIGKIDRIREILGEDCGISTDMISGFCTETEEEHQD 390 Query: 350 TMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408 ++ L+D + Y A+ F YS R GT + + E+VK RL + + N Sbjct: 391 SLSLMDYVHYDYAYMFAYSERPGTLAAKKYADDIPEDVKKRRLNEIIARQLAHSAERNQR 450 Query: 409 CVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 +GQ+ VLIE K L GR+ + VV +H G + V +T+ +TL GE+ Sbjct: 451 HIGQVQRVLIEGPSKRSDDFLCGRNDQNKMVVFPKGDHQKGQYVNVLVTECTSATLRGEV 510 Query: 468 V 468 V Sbjct: 511 V 511 >gi|88597143|ref|ZP_01100379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni 84-25] gi|121613595|ref|YP_001000165.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni 81-176] gi|167005123|ref|ZP_02270881.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni 81-176] gi|218562113|ref|YP_002343892.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|123141627|sp|Q0PB55|MIAB_CAMJE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229890471|sp|A1VYH4|MIAB_CAMJJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|87250048|gb|EAQ73006.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni 81-176] gi|88190832|gb|EAQ94805.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni 84-25] gi|112359819|emb|CAL34606.1| putative tRNA 2-methylthioadenosine synthase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925725|gb|ADC28077.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni IA3902] gi|315928214|gb|EFV07531.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930005|gb|EFV09148.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni 305] Length = 433 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 161/447 (36%), Positives = 248/447 (55%), Gaps = 20/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS M ++ + Y + +ADLI++NTC +REK K++S Sbjct: 4 KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G +K KEG + V GC A G EI +R+P V+ V+G + ++ + ++ Sbjct: 64 VGGFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +F VD DY E +F + Y +++ I GCDK CT+C+VP+TRG EI Sbjct: 118 KFMG--VDIDYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261 S + + EA+K I+ G EI LLGQNVN + GK E K FSDLL LS I+GL Sbjct: 169 SIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEGLE 227 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP M D ++ + + +H+P+QSGS ILK+M R +T Y + Sbjct: 228 RIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALK 287 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R + P+++IS+D IV FPGE++ DF T+D+++K+ + Q FSFKYS R T + M Q Sbjct: 288 LRELCPNVSISTDIIVAFPGESEKDFEETVDVLEKVRFEQIFSFKYSKRPLTKAATMPNQ 347 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 +DE + + RL LQ + E + +VL E+ + + GR+ V + Sbjct: 348 IDEEIASRRLSTLQNRHSEILDKIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVE 406 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G +V+IT+ K LYGE+V Sbjct: 407 GSEELLGQFKEVKITNAKRMVLYGEIV 433 >gi|297626490|ref|YP_003688253.1| 2-methylthioadenine synthetase MiaB protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922255|emb|CBL56827.1| 2-methylthioadenine synthetase MiaB protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 504 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 154/428 (35%), Positives = 243/428 (56%), Gaps = 26/428 (6%) Query: 15 SQIVDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-----DADLIVLN 68 + VD P R + V +YGCQMN +DS R+ + GY + + + AD++V N Sbjct: 7 TPAVDAPSAPARSYRVITYGCQMNAHDSERIAGLLDQAGYVALPAHEHTEIGPADVVVFN 66 Query: 69 TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128 TC +RE A ++Y LGR+ K KE + + V GC+AQ + + I+ ++P V+VV Sbjct: 67 TCAVRENADNRLYGNLGRMATFK----KEHPGMQIAVGGCMAQKDRDLIVSKAPWVDVVF 122 Query: 129 GPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187 G LP LLERAR + V+ +++ L +R+ A+++I GC+ Sbjct: 123 GTNNVGSLPILLERARIEQASQVEITEALQTFPSNLPT-----HRELDYAAWVSISVGCN 177 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCT 246 CT+C+VP RG E R ++ E + L+D GV EITLLGQNVN + G++ G++ Sbjct: 178 NTCTYCIVPALRGKETDRRPGDILAEIQMLVDQGVQEITLLGQNVNTY---GVEFGDRGA 234 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F+ LL + +I GL R+R+T+ HP +D +I+A + +M LH+P+QSGSD +L++M Sbjct: 235 FAKLLRACGDITGLERVRFTSPHPAAFTDDVIEAMAETPNVMHQLHMPLQSGSDHVLRAM 294 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + + + I++R+R+ PD AIS+D IVGFPGETD+DF T+ V + + A++F+ Sbjct: 295 RRSYRSERFHGILERVRAAMPDAAISTDIIVGFPGETDEDFEQTLQAVRRSRFTNAYTFQ 354 Query: 367 YSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 YS R GTP M QV +V + ERL+ +Q ++ ++ N +G +EV+ Sbjct: 355 YSIRPGTPAGEMANQVPHDVVQERYERLVAVQDEISWEE---NKLLLGANVEVMFTTGDG 411 Query: 424 EKGKLVGR 431 K + R Sbjct: 412 RKDQATDR 419 >gi|317500218|ref|ZP_07958449.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium 8_1_57FAA] gi|316898389|gb|EFV20429.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium 8_1_57FAA] Length = 483 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 154/409 (37%), Positives = 239/409 (58%), Gaps = 20/409 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F V ++GCQMN DS ++ + GY + AD ++ NTC +RE A ++VY LG+ Sbjct: 47 FCVTTFGCQMNARDSEKLVGILEQIGYVEEPDEEKADFVIYNTCTVRENANQRVYGRLGQ 106 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELL-ERA 143 + +K K +++ + GC+ Q E E L++S V+++ G Y+ EL+ R Sbjct: 107 LGRIK----KTNPHMMIALCGCMMQEPEVVEKLKKSYRFVDIIFGTHNIYKFAELIVSRM 162 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK V+D + DK + D RK + + I GC+ FC++C+VPY RG E Sbjct: 163 NSGKMVIDI-WKDTDKI----VEDLPSERKYPFKSGVNIMFGCNNFCSYCIVPYVRGRER 217 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E +L ++GV E+ LLGQNVN++ GK L+ TF+ LL + +I + R+ Sbjct: 218 SRDPKAIIREIERLAEDGVVEVMLLGQNVNSY-GKTLE-HPMTFAQLLREIEKIDKIERI 275 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD LI+ + +LHLPVQSGS RIL+ MNRR+T Y ++++++R Sbjct: 276 RFMTSHPKDLSDELIEVMAQSKKICRHLHLPVQSGSTRILEKMNRRYTKEHYLKLVEKLR 335 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PDI++++D IVGFPGET++DFR T+D+V K+ Y AF+F YS R GTP + M +Q+ Sbjct: 336 KAIPDISLTTDIIVGFPGETEEDFRETLDVVRKVQYDSAFTFIYSKRTGTPAAAMEDQIS 395 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACV---GQIIEVLIEKHGKEKGKLV 429 ++V +R L L E Q + C G + VL+E + +L+ Sbjct: 396 DDVVKDRFGRL---LEEVQTISSKMCSRHEGTVQRVLVESCNEHDERLM 441 >gi|297566522|ref|YP_003685494.1| RNA modification enzyme, MiaB family [Meiothermus silvanus DSM 9946] gi|296850971|gb|ADH63986.1| RNA modification enzyme, MiaB family [Meiothermus silvanus DSM 9946] Length = 440 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 162/444 (36%), Positives = 253/444 (56%), Gaps = 29/444 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMN YD+ ++ S G E V++ +AD +++NTC +R K EKV S LG +R Sbjct: 7 TYGCQMNEYDTHLVKSELASLGAEFVDTWQEADFVLVNTCAVRGKPVEKVRSLLGELRKE 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGKRV 149 K+ R DL+V + GC+AQ E + + R V++++GP + + LE ++RF + Sbjct: 67 KDKR-----DLMVGMMGCLAQLEEGQQIARKFGVDILLGPGALTEIGKALEAKSRFWELS 121 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 E+ L G ++AF++I GC+ CT+C+VP TRG E+SR Sbjct: 122 FR-----EELAHHLPPAPQGQ-----LSAFVSIIRGCNHHCTYCIVPTTRGPEVSRHPDL 171 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 ++ E +L GV E+TLLGQNVN++ G G F++LL + +I G+ R+++TTSH Sbjct: 172 ILREIEQLKAAGVVEVTLLGQNVNSY-GNDQPGFP-KFAELLRMVGQI-GIPRIKFTTSH 228 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ--IIDRIRSVR- 326 P + +D +I+A + + Y+HLPVQSGS+R+L+ M R EYR+ +DRIR++R Sbjct: 229 PVNFTDEVIRAMAETPQVCEYIHLPVQSGSNRVLRRMGR-----EYRREWYLDRIRAIRE 283 Query: 327 --PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P++ +S+D IVGFPGET++DF+ T+ L D++GY A+ F YSPR GTP + + Sbjct: 284 AMPEVVLSTDIIVGFPGETEEDFQETLSLYDQVGYDSAYMFIYSPRPGTPSYKHFQDLPR 343 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK ERL L +K ++ N VG+ +EVL+ K+ G S V++ + Sbjct: 344 EVKVERLQRLIEKQKQWSYKQNQRWVGRTLEVLVRGAAKDDSYAEGHSRGNHPVLVLASQ 403 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 + +V + L GE+V Sbjct: 404 APRPGLYQVVVKQATPHMLLGEVV 427 >gi|254457437|ref|ZP_05070865.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacterales bacterium GD 1] gi|207086229|gb|EDZ63513.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacterales bacterium GD 1] Length = 433 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 161/450 (35%), Positives = 254/450 (56%), Gaps = 20/450 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + ++ F+++ GC MN DS M + +GYE ++ +ADLI++NTC +REK K++ Sbjct: 1 MSKKLFIETLGCAMNSRDSEHMIAQLTEKEGYEAISDFREADLILINTCSVREKPVSKLF 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LG + N + K G + V GC A GEEI++R+P VN V+G + ++ E+L Sbjct: 61 SELG----IFNKKKKPGAK--IGVCGCTASHLGEEIIKRAPYVNFVLGARNVSKITEVLH 114 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + + + ++ D S E F+ R AF+ I GCDK CT+C+VP TRG Sbjct: 115 KDKAVEIDINYDES-EFAFDDF--------RTSPYKAFINISIGCDKACTYCIVPKTRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKG 259 EIS + ++ EA + +D+G EI LLGQNVN + G+ GE K FS+LL LS+I+G Sbjct: 166 EISIPDALIIREAERAVDSGAKEIFLLGQNVNNY-GRRFSGEHEKVNFSELLRRLSKIEG 224 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L RLR+T+ HP M D I+ + +H+P+QSGS ++LK M R ++ + + Sbjct: 225 LERLRFTSPHPFHMDDEFIEEFASNPKICKSMHMPLQSGSTKVLKDMKRGYSKEWFLNRV 284 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +++R+ P ++IS+D IV FPGE+D+DF ++D++ ++ + Q FSFKYS R T + Sbjct: 285 EKLRAECPQVSISTDIIVAFPGESDEDFEDSLDVMRQVRFNQIFSFKYSARPETEAEHFT 344 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 VDE V ++RL LQ E N +G+ V E+ K+ + GRS + Sbjct: 345 NTVDEEVASDRLTALQSLNTEIVDEINATSLGKTYRVYFEELIKDYF-VSGRSDNNIVIK 403 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + + +G+ V+IT + + L GE+V Sbjct: 404 VKGSDELLGEFRDVKITSIGRTILTGEVVA 433 >gi|189501144|ref|YP_001960614.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chlorobium phaeobacteroides BS1] gi|229890477|sp|B3ENP4|MIAB_CHLPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|189496585|gb|ACE05133.1| RNA modification enzyme, MiaB family [Chlorobium phaeobacteroides BS1] Length = 447 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 158/446 (35%), Positives = 251/446 (56%), Gaps = 20/446 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++++GCQMN D+ + + +GY S + ADL++LNTC +RE A EK+ L Sbjct: 14 KKVYIRTFGCQMNQADTEIITALLQDEGYVMTGSEERADLVILNTCAVRENAVEKILHTL 73 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ + SR LLV V GCV Q E++ + ++ + GP TY +LP ++ A Sbjct: 74 DHMKGKRRSR----PGLLVGVIGCVPQYYREKMFGMADGIDFLAGPDTYRQLPAMIANAG 129 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G R D +S ++ + + G ++AF+ + GC+ C FCVVP+TRG E S Sbjct: 130 QGIRGADFGFSSDETYCGIEPARSGT-----ISAFIPVMRGCNNRCAFCVVPFTRGKERS 184 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R V+++ +L +G EITLLGQNVN++ D C F++LL ++ VR+R Sbjct: 185 RPFRSVLEDVGRLAASGYKEITLLGQNVNSYSD---DEAACDFTELLDRVAVAAEGVRIR 241 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP+D+S+ L++ + + +HLPVQSGS R+LK MNR HT EY + I IRS Sbjct: 242 FTTSHPKDISESLVRVIAARNNICNAIHLPVQSGSTRMLKLMNRGHTREEYFEKIAMIRS 301 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--- 381 P + +S+D I GF GET +D +AT+ +++ + + A+ F YS R GT + L Sbjct: 302 AIPGVTVSTDLIAGFCGETLEDHQATLSMMEDVRFDFAYMFYYSVRPGTYAAKHLPDDVP 361 Query: 382 -VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV 439 ++ + E ++ LQ + ++ N A VG ++EVL E K + L+GR+ + VV Sbjct: 362 EEEKKRRLEEIIALQGSISGER---NAAEVGAVVEVLAESESKRSSEMLMGRTDTNRVVV 418 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465 + GD++KVRI +TL G Sbjct: 419 FDRHGFEAGDLVKVRIRSSTPATLIG 444 >gi|86148942|ref|ZP_01067174.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840300|gb|EAQ57557.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni CF93-6] Length = 433 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 161/447 (36%), Positives = 248/447 (55%), Gaps = 20/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS M ++ + Y + +ADLI++NTC +REK K++S Sbjct: 4 KKLFIQTLGCAMNVRDSEHMIAELTQKENYVLTEDIKEADLILINTCSVREKPVHKLFSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G +K KEG + V GC A G EI +R+P V+ V+G + ++ + ++ Sbjct: 64 VGGFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +F VD DY E +F + Y +++ I GCDK CT+C+VP+TRG EI Sbjct: 118 KFMG--VDIDYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261 S + + EA+K I+ G EI LLGQNVN + GK E K FSDLL LS I+GL Sbjct: 169 SIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEGLE 227 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP M D ++ + + +H+P+QSGS ILK+M R +T Y + Sbjct: 228 RIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALK 287 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R + P+++IS+D IV FPGE++ DF T+D+++K+ + Q FSFKYS R T + M Q Sbjct: 288 LRELCPNVSISTDIIVAFPGESEKDFEETVDVLEKVRFEQIFSFKYSKRPLTKAATMPNQ 347 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 +DE + + RL LQ + E + +VL E+ + + GR+ V + Sbjct: 348 IDEEIASRRLSTLQNRHSEILDKIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVE 406 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G +V+IT+ K LYGE+V Sbjct: 407 GSEELLGQFKEVKITNAKRMVLYGEIV 433 >gi|152993775|ref|YP_001359496.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Sulfurovum sp. NBC37-1] gi|151425636|dbj|BAF73139.1| tRNA-i(6)A37 thiotransferase enzyme [Sulfurovum sp. NBC37-1] Length = 419 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 163/435 (37%), Positives = 239/435 (54%), Gaps = 18/435 (4%) Query: 36 MNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MNV DS M ++ + YE ++++ADLI++NTC +REK K++S +G K Sbjct: 1 MNVRDSEHMIAELNQKEPYELTQNVEEADLIIINTCSVREKPVAKLFSEIGVFNKYKKPG 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154 K G VAGC A G++I++R+P V+ V+G + ++ E++++ + +DTDY Sbjct: 61 AKIG------VAGCTASHLGKDIIKRAPSVDFVIGARNVSKITEVVDKKHAVE--IDTDY 112 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 S G R A + I GCDK CTFC+VP TRG EIS +V E Sbjct: 113 DE-------STYAFGEYRTNPFKAMVNISIGCDKSCTFCIVPATRGDEISIPSDLLVQEI 165 Query: 215 RKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 K + G E+ LLGQNVN + R G EK F+ LL +S+I+GL R+R+T+ HP M Sbjct: 166 TKAVATGAKEVMLLGQNVNNYGRRFGATEEKIDFTGLLQKISKIEGLERIRFTSPHPLHM 225 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 D I+ + +H+P+QSGS +LK M R +T + ++IR + P+ IS+ Sbjct: 226 DDAFIQEFASNPKICKQIHVPLQSGSTSLLKVMKRGYTKENFLGRCEKIRMLCPEATIST 285 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 D IVGFPGET+ DF TMD+++K+ + Q FSFKYSPR T + EQ+D + ERL Sbjct: 286 DIIVGFPGETEADFEDTMDVLEKVRFEQLFSFKYSPRPHTEAAEFEEQIDNKIAGERLTR 345 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453 LQ + E DA +G++ EV ++ K G++ GRS + V + +G I+ V Sbjct: 346 LQTRHTEILDEIMDAQLGKVHEVYFDEL-KSNGRVSGRSDDGKLVFVEGSEELLGKIVDV 404 Query: 454 RITDVKISTLYGELV 468 RI L G LV Sbjct: 405 RIIKTSRGALDGVLV 419 >gi|326567673|gb|EGE17779.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella catarrhalis BC1] Length = 349 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 143/351 (40%), Positives = 211/351 (60%), Gaps = 23/351 (6%) Query: 134 YRLPELLE--------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179 +RLPEL E + R G VVD + +KF+ L R G TAF Sbjct: 2 HRLPELYESTTNQAKTDMGQIPKNRIG--VVDVSFPSIEKFDFLP-----EPRVEGYTAF 54 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 ++I EGC K+C+FCVVPYTRG E+SR L V+ E L + GV E+ LLGQNVN +RG+ Sbjct: 55 VSIMEGCSKYCSFCVVPYTRGEELSRPLDDVLAEIDSLAEQGVREVNLLGQNVNGYRGEK 114 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 DG C FS+LL+ +S I G+ R+RYTTSHP + +D +I+A+ +D L+ +LHLP+QSGS Sbjct: 115 DDGSICRFSELLHYVSYIDGIERIRYTTSHPLEFTDDIIEAYQSIDKLVSHLHLPIQSGS 174 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +++L +M R HT Y I ++R +RPD+ +SSDFI+GFPGETD+DF T+ + + Sbjct: 175 NQVLAAMKRNHTVDVYMNQIAKLRKIRPDLHLSSDFIIGFPGETDEDFLQTLQFAKDLDF 234 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ++SF YS R GTP S++ + V K +RL Q+ ++ +A VGQ + VL E Sbjct: 235 DHSYSFIYSKRPGTPASDLPDDVSLETKKQRLAVFQELIKRSTFEKTEAMVGQTLRVLAE 294 Query: 420 KHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD-VKISTLYGELV 468 + + +G L G + +SV+ + +G + ++IT + + + GELV Sbjct: 295 EPANRRQGYLHGTADNTRSVIFKADTDLLGKFVMIKITKAISMHLVEGELV 345 >gi|298372633|ref|ZP_06982623.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroidetes oral taxon 274 str. F0058] gi|298275537|gb|EFI17088.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroidetes oral taxon 274 str. F0058] Length = 440 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 155/450 (34%), Positives = 252/450 (56%), Gaps = 17/450 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ +++YGCQMNV DS + + S GY+ ++ +AD I++NTC +R+ A +KV S Sbjct: 1 MAKKLKIETYGCQMNVADSEVVAAIMLSDGYQMTDNEKEADTIIINTCSVRDNAEQKVIS 60 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L +L+ K DL + V GC+A+ EE+L + I + V GP +Y LP L+ Sbjct: 61 RLQYFNSLR----KNNKDLNIGVIGCMAERMQEELLEKHNI-DFVAGPDSYLDLPNLVGA 115 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ S + ++ + G + + F++I GC+KFC++C+VPYTRG E Sbjct: 116 VEKGEKAINIKLSKTETYKDVMPARIG----KSILGFVSIMRGCNKFCSYCIVPYTRGRE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +++E + L NG E+TLLGQNV+++ G FS LL ++ +R Sbjct: 172 RSREVESIINEVKNLQANGYKEVTLLGQNVDSYLYNDGKGNATDFSQLLEKVALAVPDMR 231 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTS+P DM+D ++ + Y+HLPVQSGS++ LK M R++T EY I I Sbjct: 232 IRFTTSYPNDMTDQTLEVIAQYPNICRYIHLPVQSGSNKTLKLMKRKYTREEYLDRIAAI 291 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 R + P+ +I +D GF E++ DF T+ L+ ++ + AF FKYS R GT + L + Sbjct: 292 RRILPEASIGTDIFCGFSDESEQDFEDTLSLMREVRFDMAFMFKYSERPGTFAAKHLPDN 351 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQS 437 + E VK RL + LQ +L ++ N +G+ EVL+E + K + GR+ + Sbjct: 352 IPEEVKIHRLNQIIALQNQL---SLTSNLNDIGKTFEVLVEGYSKRSRDDFYGRTSQNKV 408 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 V+ IGD+I V I ++L GE+ Sbjct: 409 VIFPKNGTKIGDLIDVTIHRATGASLIGEI 438 >gi|320334840|ref|YP_004171551.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Deinococcus maricopensis DSM 21211] gi|319756129|gb|ADV67886.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Deinococcus maricopensis DSM 21211] Length = 460 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 163/451 (36%), Positives = 251/451 (55%), Gaps = 37/451 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMN YD+ ++ S G + V+S+D+AD +++NTC IR + KV S LG +R L Sbjct: 7 TYGCQMNEYDTHTVQSQLVSLGADMVHSVDEADFVLINTCAIRGRPVNKVRSLLGDLRKL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K R ++V + GC+AQ + + + V+V++GP + + +LE Sbjct: 67 KTRR-----PIVVGMMGCLAQLQEGQDMAEEYGVDVLIGPGSLLEIGRVLEN-------- 113 Query: 151 DTDYSVEDKFERLSIVDGGYNR------KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +KF L+ D ++ + + A LTI GCD CT+C+VP TRG ++S Sbjct: 114 ------NEKFWALNFRDELHDHIPPPPPQGTLQAHLTIMRGCDHHCTYCIVPQTRGPQVS 167 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIKGLV 261 R ++ E L+ GV E+TLLGQNVNA+ +G + G TF+DLL L G+ Sbjct: 168 RHPDSILRELDTLLAAGVQEVTLLGQNVNAYGFDQGARMAGLP-TFADLL-RLVGRTGIR 225 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+++TTSHP + ++ + A D + ++HLP+QSGS+R+L+ M R +T +Y Q I Sbjct: 226 RVKFTTSHPMNFTEDVAMAMADTPAICEFIHLPMQSGSNRVLRRMAREYTREQYLQHIAD 285 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR P+ +S+D IVGFPGET++DF+ T+DL D++GY QAF F YS R GTP E Sbjct: 286 IRKHLPNAVLSTDVIVGFPGETEEDFQQTLDLYDEVGYDQAFMFIYSARPGTPSHKHFED 345 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 + + +K E RL+ LQK+ +++ N A VG EVL+ +G L G + V Sbjct: 346 LPKELKTERLGRLVELQKQWSQRR---NAALVGSAQEVLLRGDAVTEGFLEGHTRGNHPV 402 Query: 439 VL-NSKNHNIGDIIKVRITDVKISTLYGELV 468 V+ + + + RI +YG+L+ Sbjct: 403 VVPKALGADAAGVYTARIEHATPHMMYGKLL 433 >gi|154249151|ref|YP_001409976.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Fervidobacterium nodosum Rt17-B1] gi|229890533|sp|A7HK86|MIAB_FERNB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|154153087|gb|ABS60319.1| RNA modification enzyme, MiaB family [Fervidobacterium nodosum Rt17-B1] Length = 430 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 166/443 (37%), Positives = 256/443 (57%), Gaps = 30/443 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMN DS ++ + +G E + +DAD+++LNTC +R+K+ EKVYS +G++R Sbjct: 7 TYGCQMNENDSEIVKQLLKDEGIELTDDENDADVVILNTCAVRKKSEEKVYSHIGKLR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRV 149 K+G + ++ GCVA+ E E + +R V+ V+G + ++P+ + A+ G K++ Sbjct: 65 -----KKGKKIGIM--GCVAEKEKENLFKRG--VSFVIGTRALTKVPDAVLNAKNGNKQI 115 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 D E ++ ++ R A++TI GCD+FCT+C+VPYTRG E SR + + Sbjct: 116 YLEDTLDEIEYHKVE------TRSSNHHAWVTIIHGCDRFCTYCIVPYTRGREKSRPIDE 169 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V+ E L G E T LGQNV+A+ GK L DG + + LL S+I + RL + TS Sbjct: 170 VLKEVESLSQRGYKEFTFLGQNVDAY-GKDLRDG--TSLAKLLKLASQIDNVKRLWFLTS 226 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P D S + K + + + +HLPVQ GSD+ILK+MNRR+T EY +I+ IR + PD Sbjct: 227 YPTDFSLEIPKVMLESEKVARSIHLPVQHGSDKILKAMNRRYTRQEYIDLINEIRKIVPD 286 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVK 387 +ISSD IVGFPGE D+DF AT++LV + + + YSPR GT L + V VK Sbjct: 287 ASISSDIIVGFPGENDEDFEATVELVKLLKFERLNLAVYSPREGTVAWKYLKDDVPYQVK 346 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 R LL LQK + ++ N + +G+ +EV++E K G GR + + + Sbjct: 347 VRRMSYLLNLQKTINKE---LNKSYLGKEVEVIVEAQAK-NGLFYGRDIRNKIISFEANP 402 Query: 445 HNIGDIIKVRITDVKISTLYGEL 467 +IG + V++ + LYGE+ Sbjct: 403 ESIGKNVIVKVNKISAGPLYGEI 425 >gi|220904542|ref|YP_002479854.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868841|gb|ACL49176.1| RNA modification enzyme, MiaB family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 454 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 159/467 (34%), Positives = 257/467 (55%), Gaps = 47/467 (10%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 ++ + + + ++GCQMNV+DS + ++G+ S++DA ++V+NTC +REK +KV Sbjct: 1 MIEKSYHIITFGCQMNVHDSQWLGRALTARGFVEA-SLEDAQVVVVNTCSVREKPEQKVM 59 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGRIR++ D+LV VAGCVAQ GE + V +V G P +E Sbjct: 60 SALGRIRHVTGG----NPDVLVGVAGCVAQQLGEGFFSKESQVRLVAGSDGISGAPAAIE 115 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVD--GGYNRKRGV----------TAFLTIQEGCDKF 189 R +E+ LS++D Y + AF+ I +GCD F Sbjct: 116 RL------------LEEPTLHLSLLDFTSHYIEREAGPGTSGSSSGPVAFVNIMQGCDNF 163 Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249 C +C+VP+TRG + SRS + ++DE R +++ G EITLLGQNVNA+ G+ G+ +F+ Sbjct: 164 CAYCIVPFTRGRQKSRSAAAILDECRAVLERGAREITLLGQNVNAF-GQDKSGDGTSFAQ 222 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL ++ + GL RLRY T HP+DM + A +L L P LHLP+Q+GSD +L+SM RR Sbjct: 223 LLRQVAGLPGLERLRYVTPHPKDMGPEDVAAFAELPQLCPRLHLPLQAGSDVVLRSMRRR 282 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + + + +++D +R+ RPD+A+S+D IV FPGET++DF+ T+ ++ + +FSF YS Sbjct: 283 YDSAAFLRLVDDLRAARPDLALSTDLIVAFPGETEEDFQDTLAMMRACNFMSSFSFIYSD 342 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE------VLIEKHGK 423 R G + ++ +V +RL ++L+ Q + +E +L+E Sbjct: 343 RPGARAALFPGKIAPDVAQDRL----RRLQALQDDLGARWLAARVENRDKTTLLMEGPSP 398 Query: 424 EKGKLV-----GRSPW--LQSVVLNSKNHNIGDIIKVRITDVKISTL 463 + G+ GR P+ V L + + G +++ IT+ K +L Sbjct: 399 KPGESAEPSWQGRDPYGVPVHVPLPAGADHTGFLVQTVITEAKKHSL 445 >gi|153816459|ref|ZP_01969127.1| hypothetical protein RUMTOR_02712 [Ruminococcus torques ATCC 27756] gi|331087554|ref|ZP_08336485.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Lachnospiraceae bacterium 3_1_46FAA] gi|145846201|gb|EDK23119.1| hypothetical protein RUMTOR_02712 [Ruminococcus torques ATCC 27756] gi|330400694|gb|EGG80298.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Lachnospiraceae bacterium 3_1_46FAA] Length = 483 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 154/409 (37%), Positives = 239/409 (58%), Gaps = 20/409 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F V ++GCQMN DS ++ + GY + AD ++ NTC +RE A ++VY LG+ Sbjct: 47 FCVTTFGCQMNARDSEKLVGILEQIGYVEEPDEEKADFVIYNTCTVRENANQRVYGRLGQ 106 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELL-ERA 143 + +K K +++ + GC+ Q E E L++S V+++ G Y+ EL+ R Sbjct: 107 LGRIK----KTNPHMMIALCGCMMQEPEVVEKLKKSYRFVDIIFGTHNIYKFAELIVSRM 162 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK V+D + DK + D RK + + I GC+ FC++C+VPY RG E Sbjct: 163 NSGKMVIDI-WKDTDKI----VEDLPSERKYPFKSGVNIMFGCNNFCSYCIVPYVRGRER 217 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E +L ++GV E+ LLGQNVN++ GK L+ TF+ LL + +I + R+ Sbjct: 218 SRDPKAIIREIERLAEDGVVEVMLLGQNVNSY-GKTLE-HPMTFAQLLREIEKIDKIERI 275 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD LI+ + +LHLPVQSGS RIL+ MNRR+T Y ++++++R Sbjct: 276 RFMTSHPKDLSDELIEVMAQSKKICRHLHLPVQSGSTRILEKMNRRYTKEHYLKLVEKLR 335 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PDI++++D IVGFPGET++DFR T+D+V K+ Y AF+F YS R GTP + M +Q+ Sbjct: 336 KAIPDISLTTDIIVGFPGETEEDFRETLDVVCKVQYDSAFTFIYSKRTGTPAAAMEDQIS 395 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACV---GQIIEVLIEKHGKEKGKLV 429 ++V +R L L E Q + C G + VL+E + +L+ Sbjct: 396 DDVVKDRFGRL---LEEVQTISSKMCSRHEGTVQRVLVESCNEHDERLM 441 >gi|269792733|ref|YP_003317637.1| RNA modification enzyme, MiaB family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100368|gb|ACZ19355.1| RNA modification enzyme, MiaB family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 433 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 246/446 (55%), Gaps = 20/446 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + +GCQMNVYD+ ++ G+ + +D+ V TC IR+KA +KV S +GR Sbjct: 4 FNINVFGCQMNVYDADKLRAALLGMGWTQ-GEPGGSDVEVYVTCSIRDKAEQKVLSEIGR 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +SR KE LV + GC+AQ G E+ RR P V VV GP+ ++PE LER+ Sbjct: 63 -----HSRSKE--RPLVALVGCMAQRTGRELARRFPWVKVVAGPRHLGKVPEALERSMAD 115 Query: 147 KRV---VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 V +D D D V+ G V ++TI GCD FC +C+VPY RG Sbjct: 116 GEVRLLLDEDPREVDDLCCTPHVEEG-----AVRGYVTIAHGCDHFCAYCIVPYVRGRFR 170 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +V+E R+L+ GV EITLLGQNVN + GK L G F LL ++ ++G+ R+ Sbjct: 171 SRDPEGIVEEVRQLVARGVREITLLGQNVNRY-GKDLPGGP-QFPGLLEMVARVEGISRV 228 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ T+HP D S L+ + + P ++LPVQSGSDR+LK M R +T EY ++ +R Sbjct: 229 RFATNHPVDFSRELVDVMVRCEKVCPSINLPVQSGSDRVLKLMGRGYTRDEYLSMVALLR 288 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++ I+SD IVGFPGET +DF ++ L++++ + + YS R GT M +D Sbjct: 289 DNLPEVGITSDLIVGFPGETPEDFEKSLSLLEEVRFDLVHTAAYSVRPGTRAERMEGHLD 348 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNS 442 + KAERL + + + N + VG++ VL+E K +G GR+P VVL Sbjct: 349 VSTKAERLNRVNQLQARISLEINLSKVGRVYPVLVEGPAPKGEGMWQGRTPQ-DKVVLFK 407 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 +G+ + VRIT L GEL+ Sbjct: 408 GPSKVGEEVPVRITSALAWYLQGELI 433 >gi|86151526|ref|ZP_01069740.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni 260.94] gi|315124005|ref|YP_004066009.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841155|gb|EAQ58403.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni 260.94] gi|315017727|gb|ADT65820.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 433 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 160/447 (35%), Positives = 247/447 (55%), Gaps = 20/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS M ++ + Y + +ADLI++NTC +REK K++S Sbjct: 4 KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G +K KEG + V GC A G EI +R+P V+ V+G + ++ + ++ Sbjct: 64 VGGFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +F VD +Y E +F + Y +++ I GCDK CT+C+VP+TRG EI Sbjct: 118 KFMG--VDINYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261 S + + EA+K ++ G EI LLGQNVN + GK E K FSDLL LS I+GL Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEGLE 227 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP M D ++ + + +H+P+QSGS ILK+M R +T Y + Sbjct: 228 RIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALK 287 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R + P+++IS+D IV FPGE++ DF TMD+++K+ + Q FSFKYS R T + M Q Sbjct: 288 LRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQ 347 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 +DE + RL LQ + E + +VL E+ + + GR+ V + Sbjct: 348 IDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSITGRTDNNFLVQVE 406 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G +V+IT+ K LYGE+V Sbjct: 407 GSEELLGQFKEVKITNAKRMVLYGEIV 433 >gi|226324928|ref|ZP_03800446.1| hypothetical protein COPCOM_02720 [Coprococcus comes ATCC 27758] gi|225207376|gb|EEG89730.1| hypothetical protein COPCOM_02720 [Coprococcus comes ATCC 27758] Length = 503 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 161/445 (36%), Positives = 245/445 (55%), Gaps = 22/445 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GCQMN DS ++ + GY+ + AD ++ NTC +RE A +VY GR+ L Sbjct: 71 TFGCQMNARDSEKLVGVLELIGYKEEPDEEKADFVIYNTCTVRENANLRVY---GRLGQL 127 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 + K+ + + + GC+ Q E+I + V+++ G Y+ EL+ +R Sbjct: 128 GAKKKKKNPHMFIGLCGCMMQEPTVVEKIKKSYRFVDLIFGTHNIYKFAELIVTRFESER 187 Query: 149 VV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +V DTD VED RK + + I GC+ FC++C+VPY RG E Sbjct: 188 MVIDIWKDTDKIVEDL---------PSERKFSFKSGVNIMFGCNNFCSYCIVPYVRGRER 238 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR+ ++ E L+ +GV E+ LLGQNVN++ GK L+ E TF+ LL + +I+GL R+ Sbjct: 239 SRNPKDIIREIEGLVADGVVEVMLLGQNVNSY-GKNLE-EPMTFAQLLQEIEKIEGLERI 296 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D+SD LI + +LHLPVQSGS RIL+ MNR +T Y +++ +IR Sbjct: 297 RFMTSHPKDLSDELIDVMAHSKKICKHLHLPVQSGSSRILQKMNRHYTKEHYLEVVRKIR 356 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PDI++++D IVGFPGET++DF+ T+D+V ++ Y AF+F YS R GTP + M +QV Sbjct: 357 EAVPDISLTTDIIVGFPGETEEDFQDTLDIVRQVRYDSAFTFIYSKRTGTPAAAMEDQVP 416 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442 ++V +R L K++++ G +VL+E LV GR V Sbjct: 417 DDVVKDRFDRLLKEVQQISAEVCSVHQGTTQDVLVESVNDHDPSLVTGRMSNNLLVHFPG 476 Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467 IG I+ V + + K GEL Sbjct: 477 DESMIGKIVTVYLKEAKGFYYMGEL 501 >gi|148925837|ref|ZP_01809524.1| hypothetical protein Cj8486_0449c [Campylobacter jejuni subsp. jejuni CG8486] gi|145844823|gb|EDK21927.1| hypothetical protein Cj8486_0449c [Campylobacter jejuni subsp. jejuni CG8486] Length = 433 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 160/447 (35%), Positives = 246/447 (55%), Gaps = 20/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS M ++ + Y + +ADLI++NTC +REK K++S Sbjct: 4 KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G +K KEG + V GC A G EI +R+P V+ V+G + ++ + ++ Sbjct: 64 VGSFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +F VD DY E +F + Y +++ I GCDK CT+C+VP+TRG EI Sbjct: 118 KFMG--VDIDYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261 S + + EA+K ++ G EI LLGQNVN + GK E K FSDLL LS I+ L Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEDLE 227 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP M D ++ + + +H+P+QSGS ILK+M R +T Y + Sbjct: 228 RIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALK 287 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R + P+++IS+D IV FPGE++ DF TMD+++K+ + Q FSFKYS R T + M Q Sbjct: 288 LRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQ 347 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 +DE + RL LQ + E + +VL E+ + + GR+ V + Sbjct: 348 IDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVE 406 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G +V+IT+ K LYGE+V Sbjct: 407 GSEELLGQFKEVKITNAKRMVLYGEIV 433 >gi|217076413|ref|YP_002334129.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermosipho africanus TCF52B] gi|229891011|sp|B7IFC4|MIAB_THEAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|217036266|gb|ACJ74788.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermosipho africanus TCF52B] Length = 429 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 162/444 (36%), Positives = 251/444 (56%), Gaps = 20/444 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +FF+K+YGCQMN DS +GYE + ++AD+++LNTC +R+KA +K S +G Sbjct: 2 KFFIKTYGCQMNENDSEVARYYLEQEGYESAENENEADIVILNTCVVRKKAEDKFLSTIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +R KN +I V GC A+ E++ +R VN V+G + R+PE +E + Sbjct: 62 ELRK-KNKKIG--------VMGCGAEKLKEDLFKRG--VNFVIGTRAISRIPEAVELSIK 110 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 GK+ D + D+ + +I+ R A++TI GC++FCT+C+VPYTRG E SR Sbjct: 111 GKKAAIFDDKL-DEIDYRNIL----KRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + ++ E + L NGV EIT LGQNV+A+ GK L+ + + + LL +I+ + R+ + Sbjct: 166 KMDDILREVKNLSLNGVREITYLGQNVDAY-GKDLN-DGTSLAKLLNETKKIENIERIWF 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TS+P D S + + + + +HLPVQ GS++ILK MNRR+T EY ++I IR + Sbjct: 224 LTSYPTDFSLDIAREIASSEKIAKSIHLPVQHGSNKILKKMNRRYTIEEYYELIKSIREI 283 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDE 384 PD +ISSD IVGFP ET+DDF+ T+ LV++I + + YSPR GT E V Sbjct: 284 VPDASISSDIIVGFPDETEDDFQQTVKLVEEIKFERLNLAIYSPREGTIAWKYFEDNVPR 343 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +K R+ L +E N++ + + +EV++E+ K G GR + + Sbjct: 344 AIKTRRMAYLLNLQKEINKMLNESYLDKTVEVIVEERAKS-GLFYGRDIRNKIIAFEGDE 402 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG I V+I LYG+++ Sbjct: 403 SLIGKKILVKIKKTTAGPLYGDII 426 >gi|194044464|ref|XP_001928891.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 [Sus scrofa] Length = 589 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 163/487 (33%), Positives = 265/487 (54%), Gaps = 39/487 (8%) Query: 18 VDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 VD+ + QR ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREKA Sbjct: 94 VDELLGKQRKVYLETYGCQMNVNDTEIAWSILQKNGYLRTSNLQEADVILLVTCSIREKA 153 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 + +++ L +++ LK+ R++ L + + GC+A+ EEIL R +V+++ GP Y L Sbjct: 154 EQTIWNRLHQLKALKSKRLRSQVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDL 213 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 P LL A G++ + S+++ + + V + +AF++I GCD C++C+VP Sbjct: 214 PRLLAVAESGQQAANVLLSLDETYADVLPVQTSPS---ATSAFVSIMRGCDNMCSYCIVP 270 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLD 241 +TRG E SR ++ +++E RKL + G+ E+TLLGQNVN++R +G Sbjct: 271 FTRGRERSRPVASILEEVRKLSEQGLKEVTLLGQNVNSFRDTSEVQFNNAVSTNLSRGFS 330 Query: 242 GEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295 T F+ LL +S+I +R+R+T+ HP+D D +++ D D + +HLP Sbjct: 331 SNYKTKQGGLRFAHLLDQVSQIDPEMRIRFTSPHPKDFPDEVLQLIHDRDNICKQIHLPA 390 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355 QSGS R+L++M R ++ Y +++ IR P +++SSDFI GF GET++D T+ L+ Sbjct: 391 QSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLQ 450 Query: 356 KIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414 ++ Y F F YS R T + L + + E VK RL L RE+ N VG I Sbjct: 451 EVQYNMGFLFAYSMRQKTRAYHRLKDDIPEEVKLRRLEELITVFREEATKANKTFVGCIQ 510 Query: 415 EVLIEKHGKEKGK-LVGRSPWLQSVVL------NSKNHNI------GDIIKVRITDVKIS 461 VL+E K L GR+ V+ + N + GD + V+IT Sbjct: 511 LVLVEGFSKRSSTDLCGRNDGNLKVIFPDVELEDVTNSGLKVRAQPGDYVLVKITSASSQ 570 Query: 462 TLYGELV 468 TL G ++ Sbjct: 571 TLKGHVL 577 >gi|118474317|ref|YP_892518.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter fetus subsp. fetus 82-40] gi|229890467|sp|A0RQN5|MIAB_CAMFF RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|118413543|gb|ABK81963.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter fetus subsp. fetus 82-40] Length = 434 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 165/449 (36%), Positives = 243/449 (54%), Gaps = 20/449 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 V ++ F+++ GC MNV DS + ++ + YE N ++DADLI++NTC +REK K++ Sbjct: 3 VKKKLFIETLGCAMNVRDSEHIIAELSQKENYEVTNIIEDADLILINTCSVREKPVHKLF 62 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S +G K + V GC A G E+ +R+P V+ V+G + ++ L Sbjct: 63 SEVGTYEKAKKKG------AKIGVCGCTASHLGSEVFKRAPYVDFVLGARNISKITTALN 116 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +F ++ D S E F G R +F+ I GCDK CT+C+VP TRG Sbjct: 117 TPKFVSVDINHDES-EYAF--------GDFRSSPYKSFVNIMIGCDKKCTYCIVPQTRGD 167 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKG 259 EIS ++ E RK +G EI LLGQNVN + GK G EK FSDLL +SE+ G Sbjct: 168 EISIPKDIILKEVRKAASSGAKEIFLLGQNVNNY-GKRFSGTHEKIDFSDLLNLISEVDG 226 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+T+ HP M D +K + +H+P+QSGS+ ILK+M R +T + Sbjct: 227 VERIRFTSPHPLHMDDKFLKEFSTNPKICKSMHMPLQSGSNEILKAMKRGYTKEWFLDRA 286 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R + D+ IS+D IV FPGE+D DF TM +V+ I + Q FSFKYS R TP ++M Sbjct: 287 LKLREICSDVTISTDIIVAFPGESDRDFADTMSVVESIKFEQMFSFKYSSRPLTPAASMT 346 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 QV+ ++ + RL LQ + E A I EV E+ + + GR+ V Sbjct: 347 NQVNSDIASRRLSTLQARHTEILDEIVKAQKNSIHEVYFEEL-RANSSVAGRTFNNFLVQ 405 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 N +G I+KV+ITD K LYG+++ Sbjct: 406 TNGSEELLGKILKVKITDPKRMVLYGQII 434 >gi|301765780|ref|XP_002918310.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like [Ailuropoda melanoleuca] Length = 583 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 166/487 (34%), Positives = 261/487 (53%), Gaps = 39/487 (8%) Query: 18 VDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 VD+ + QR ++++YGCQMNV D+ + GY R ++ +AD+I+L TC IREKA Sbjct: 88 VDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTRNLQEADVILLVTCSIREKA 147 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 + +++ L +++ LK R++ L + + GC+A+ EEIL R +V+++ GP Y L Sbjct: 148 EQTIWNRLHQLKALKTKRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDL 207 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 P LL A G++ + S+++ + + V + +AF++I GCD C++C+VP Sbjct: 208 PRLLAVAESGQQAANVLLSLDETYADVMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVP 264 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLD 241 +TRG E SR + +++E RKL + G+ E+TLLGQNVN++R +G Sbjct: 265 FTRGRERSRPVDSILEEVRKLSEQGLKEVTLLGQNVNSFRDSSEVQFNNAVSTNLSRGFS 324 Query: 242 GE------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295 F+ LL +S I +R+R+T+ HP+D D +++ + D + +HLP Sbjct: 325 TNYKPKQGGLRFAHLLDKVSRIDPEMRIRFTSPHPKDFPDEVLQLIQERDNICKQIHLPA 384 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355 QSGS R+L++M R ++ Y ++I IR P +++SSDFI GF GET++D T+ L+ Sbjct: 385 QSGSSRVLEAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLR 444 Query: 356 KIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414 ++ Y F F YS R T + L + V E VK RL L RE+ N A VG Sbjct: 445 EVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANMASVGCTQ 504 Query: 415 EVLIEKHGKEKGK-LVGRSPWLQSVVL---------NSK---NHNIGDIIKVRITDVKIS 461 VL+E H K L GR+ V+ NSK GD + V+IT Sbjct: 505 LVLVEGHSKRSATDLCGRNDGNLKVIFPDVEMEDVNNSKVKVRAQPGDYVLVKITSTSSQ 564 Query: 462 TLYGELV 468 TL G ++ Sbjct: 565 TLKGHVL 571 >gi|289805405|ref|ZP_06536034.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 261 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 127/261 (48%), Positives = 178/261 (68%), Gaps = 5/261 (1%) Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 R VD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG E+SR Sbjct: 4 AARSVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSR 58 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ E +L GV E+ LLGQNVNAWRG+ DG TF+DLL ++ I G+ R+R+ Sbjct: 59 PSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGIDRIRF 118 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L M R HTA EY+ II ++R+ Sbjct: 119 TTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAA 178 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RPDI ISSDFIVGFPGET DDF TM L+ + + ++SF +S R GTP ++M++ V E Sbjct: 179 RPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEE 238 Query: 386 VKAERLLCLQKKLREQQVSFN 406 K +RL LQ+++ +Q ++++ Sbjct: 239 EKKQRLYILQERINQQAMAWS 259 >gi|57237512|ref|YP_178526.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni RM1221] gi|81353973|sp|Q5HW09|MIAB_CAMJR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|57166316|gb|AAW35095.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni RM1221] gi|315057878|gb|ADT72207.1| tRNA-i(6)A37 methylthiotransferase [Campylobacter jejuni subsp. jejuni S3] Length = 433 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 160/447 (35%), Positives = 246/447 (55%), Gaps = 20/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS M ++ + Y + +ADLI++NTC +REK K++S Sbjct: 4 KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G +K KEG + V GC A G EI +R+P V+ V+G + ++ + ++ Sbjct: 64 VGGFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +F VD DY E +F + Y +++ I GCDK CT+C+VP+TRG EI Sbjct: 118 KFMG--VDIDYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261 S + + EA+K ++ G EI LLGQNVN + GK E K FSDLL LS I+ L Sbjct: 169 SIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEDLE 227 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP M D ++ + + +H+P+QSGS ILK+M R +T Y + Sbjct: 228 RIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALK 287 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R + P+++IS+D IV FPGE++ DF TMD+++K+ + Q FSFKYS R T + M Q Sbjct: 288 LRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQ 347 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 +DE + RL LQ + E + +VL E+ + + GR+ V + Sbjct: 348 IDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVE 406 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G +V+IT+ K LYGE+V Sbjct: 407 GSEELLGQFKEVKITNAKRMVLYGEIV 433 >gi|161833793|ref|YP_001597989.1| RNA modification protein [Candidatus Sulcia muelleri GWSS] gi|229891010|sp|A8Z642|MIAB_SULMW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|152206283|gb|ABS30593.1| RNA modification enzyme, MiaB family [Candidatus Sulcia muelleri GWSS] Length = 453 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 155/464 (33%), Positives = 264/464 (56%), Gaps = 27/464 (5%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 ++ ++F++++YGCQMN+ DS + + ++G+ + ++ +A++I++NTC IR+K+ +K+ Sbjct: 1 MIKKKFYIENYGCQMNISDSEIVSSILNNKGFIKTENLKEANIILINTCSIRDKSEKKIL 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + +I+ + IK+ D+L+ + GC+A ++ ++N+VVGP +Y +P L+ Sbjct: 61 LRINQIKFI----IKKNNDILIGILGCMAYKFKN--IKEKKLINLVVGPDSYREIPNLIN 114 Query: 142 RARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 F K+ + T +S + + I+ +K +TAF+TI GCD CTFCVVP+TR Sbjct: 115 NF-FKKKGEYISTSFSKTETYA--DIIPKREEKK--ITAFVTIMRGCDNMCTFCVVPFTR 169 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL----------DGEKCTF 247 G E SR ++ E + L G EI LLGQNV++ W G GL + E F Sbjct: 170 GREKSRDPYSIIKECKFLFKKGYKEIILLGQNVDSYLWYGGGLKKKFKIKEIKNEEIINF 229 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 S LL ++ L+R+R+ TS+P DMSD ++ + ++HLPVQSGS+RIL MN Sbjct: 230 SKLLELVAISVPLMRIRFCTSNPNDMSDNVLNVIKKYINICKHIHLPVQSGSNRILSLMN 289 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R+HT +Y +I++I+++ P+ ++S D I GF E ++D T++L++ + Y ++ F Y Sbjct: 290 RKHTCEDYILLINKIKNIIPNCSLSCDIITGFCNENENDHNETLNLMNYVKYNFSYMFIY 349 Query: 368 SPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEK 425 S R+GT +++ V + K RL + + N +G I ++LIE K Sbjct: 350 SHRIGTYAYKKLIDNVSLSTKKRRLTEIINLQKTHSYYRNRKYIGSIQDILIEGISTKNI 409 Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 GR+ V+ KN+ IGD IKV+I + +TL G++ V Sbjct: 410 NFFYGRNSGNDIVIFPKKNYKIGDFIKVKINNCTSATLVGDIYV 453 >gi|149179348|ref|ZP_01857907.1| probable MiaB protein-putative tRNA-thiotransferase [Planctomyces maris DSM 8797] gi|148841820|gb|EDL56224.1| probable MiaB protein-putative tRNA-thiotransferase [Planctomyces maris DSM 8797] Length = 510 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 263/472 (55%), Gaps = 35/472 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++++ GCQMN+ DS + +GYE ++ +A+ I+ NTC +RE A K+YS L Sbjct: 32 HKLYIETVGCQMNMLDSELVVADLRKRGYELTQNVKEAETILFNTCSVREHAEHKIYSSL 91 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R K+ ++ V GC+AQ + + I +++P V+ VVG ++ L+++AR Sbjct: 92 GRLRYGARKNPKK----VIGVMGCMAQKDQKLIFQKAPQVDFVVGTGQLAQVASLIDKAR 147 Query: 145 --FGKRVVDTDYSV------------EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 + V + +V + F+ + R AF+ I GCDKFC Sbjct: 148 VNHSQNVRSRELAVGLGRKDGKLAEITNSFQSYDPLRDPEMRPSPYQAFVRIMIGCDKFC 207 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 ++CVVP TRG E SRS +++ E + L D GV E+TLLGQ VN+++ DG+ SDL Sbjct: 208 SYCVVPSTRGPEQSRSPREILSEVKVLADQGVKEVTLLGQTVNSYK-HTQDGKLFRLSDL 266 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 LY + +++G+ R+++ TS+P+DM+ L++A DL YLH+P+Q G + +LK M R + Sbjct: 267 LYLIHDVEGISRIKFVTSYPKDMTTDLLEAIRDLPKATRYLHVPLQHGCNDVLKVMKRGY 326 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 T +YR+++ R+ + P ++SSDFIVG PGET++ + +++ + + + +F FKYS R Sbjct: 327 TVEDYREMMQRVNEILPGCSVSSDFIVGHPGETEESHQLSLESIREFRFKNSFIFKYSER 386 Query: 371 LGTPGSNML-EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 GT + +++ + VK R +L +Q ++ E+ N +G+ +EVL+E K Sbjct: 387 PGTKAAERFKDEIPDAVKKRRNNEMLAVQNQISEED---NAEFIGKQVEVLVEGPSKSAQ 443 Query: 427 K---------LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 K LVGRS + VV + G + V I DV +TL G +V Sbjct: 444 KAIEESLAEQLVGRSNCDRIVVFDGNPRLAGSLATVEIFDVTPTTLIGGIVT 495 >gi|300088213|ref|YP_003758735.1| MiaB family RNA modification protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527946|gb|ADJ26414.1| RNA modification enzyme, MiaB family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 417 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 158/444 (35%), Positives = 252/444 (56%), Gaps = 34/444 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++ + + GCQMN ++ R+ + +G+ V +DADL++L +C +R+ A E++ + L Sbjct: 3 KYHIFTIGCQMNQAEAERLGSLMELKGFSGVEKPEDADLVLLVSCAVRQSAEERIINRLA 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + LK R L V + GC+ + + R P+V+ G ++P+ L Sbjct: 63 VLNKLKQDR----PGLKVALTGCMVDEDPSAMRRTYPMVDYFFG---AGQMPDFL----- 110 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 D+ + I+ G K GVTAF+ I +GCD FC++C+VPY RG E SR Sbjct: 111 ------------DEIPPM-ILPG----KPGVTAFVPIIQGCDNFCSYCIVPYRRGRERSR 153 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +L ++ E +L+ GV E+TLLGQNVNAW G L G+ +DLL SLS +GL+RLR+ Sbjct: 154 TLEELQAELTELVSRGVREVTLLGQNVNAW-GHDLPGQP-DLADLLTSLSRQEGLLRLRF 211 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 T+HP+DMS+ L+++ +LD + P ++LPVQ+G DR+L+ M R +TA EY ++ R+R Sbjct: 212 LTNHPKDMSERLMRSLAELDKVCPAVNLPVQAGDDRVLELMRRGYTAGEYLDLVKRLRQA 271 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDE 384 P +A+++D IVGFPGET+ F+ T L++++ + YSPR GT + + V Sbjct: 272 VPGLALTTDIIVGFPGETEAQFQNTRSLMEQVRFDAVHLAVYSPRPGTEAAEKYPDDVPR 331 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + K+ RL L++ N A G+ +EVL+E + +G+ GR + V S+ Sbjct: 332 DQKSRRLAELERLQARIAGEINAALTGETVEVLVEN--QNRGRWRGRDIRGKLVFFESRM 389 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 G ++ VRITD +L GE+V Sbjct: 390 ELSGRLVNVRITDTGPWSLRGEIV 413 >gi|42527084|ref|NP_972182.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Treponema denticola ATCC 35405] gi|81412170|sp|Q73MD3|MIAB_TREDE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|41817508|gb|AAS12093.1| tRNA-i(6)A37 modification enzyme MiaB [Treponema denticola ATCC 35405] Length = 451 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 157/458 (34%), Positives = 255/458 (55%), Gaps = 27/458 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +F ++YGCQMN +S ME + +G+ + + DL+++NTC +R A +V LG Sbjct: 3 YFFETYGCQMNQAESSSMEQILLEKGWTNSSDAEHCDLLIINTCSVRITAENRVLGRLGH 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 LK R V++ GC+A+ EI + P+++ VVG LP++ + + Sbjct: 63 FSGLKKKR-----KFFVLLIGCMAERLYTEIQKEFPLIDYVVGMFERNLLPQIFDEIK-- 115 Query: 147 KRVVDTDYSVEDKFERLS--IVDGGY-----NRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 R+ + +Y E + + V G Y + + +++ I GC+ FCT+C+VPY R Sbjct: 116 ARLKNDNYMAEFTHDNIEEKPVSGYYFAPLSHSPKSFQSYVPIMNGCNNFCTYCIVPYVR 175 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS---E 256 G E+SR +++++ E +L GV EITLLGQNVN+++G+ +G F LL ++ + Sbjct: 176 GREVSRPVNEILQEITELSSRGVREITLLGQNVNSYKGEDGEGRLIDFPKLLTLIAREAD 235 Query: 257 IKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 ++R +R+ +SHP+DMSD LI L +HLPVQ GSD ILK MNR +T Y Sbjct: 236 KTDMIRWIRFMSSHPKDMSDALIDTIAAEKRLCKLVHLPVQHGSDTILKRMNRVYTIEHY 295 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + I R++ PDIA+S+D ++GFPGET+DD +AT+DL+ +I + AF + Y+PR GT Sbjct: 296 KNRIKRLKETIPDIALSTDILMGFPGETEDDVKATLDLMQEIEFDSAFMYHYNPREGTKA 355 Query: 376 SNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGR 431 N +++ E VK ERL + LQ K+ A +G+ +++L+E H + E+ +L G Sbjct: 356 FNYPDRIPEEVKIERLGRVIDLQLKI---TAKKMKAKLGKKVDILVESHSRNERSELFGH 412 Query: 432 SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467 + + V+ N IG+ + ++K T L Sbjct: 413 TEQGEMTVIQGNPPESLIGNFAHAELKELKGKTFRANL 450 >gi|160892633|ref|ZP_02073423.1| hypothetical protein CLOL250_00163 [Clostridium sp. L2-50] gi|156865674|gb|EDO59105.1| hypothetical protein CLOL250_00163 [Clostridium sp. L2-50] Length = 483 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 167/450 (37%), Positives = 257/450 (57%), Gaps = 28/450 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 +++YGCQMNV DS ++ + GY +S +DADL++ NTC +RE A KVY LG ++ Sbjct: 52 IQTYGCQMNVRDSEKLTGILEEIGYTSSDS-EDADLVIYNTCTVRENANRKVYGHLGIMK 110 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERARF 145 + K + D ++ + GC+ Q I ++ V++V G ++L E+ R Sbjct: 111 HDKETH----PDKMIGLCGCMMQEPDVVATIQKKYRFVDMVFGTHNVFKLAEIYCNRIEA 166 Query: 146 GKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G +VVD T+ VED V + K GV GC+ FCT+C+VPY RG Sbjct: 167 GGQVVDIWKDTNLVVED-----LPVKKEFPFKSGVNIMF----GCNNFCTYCIVPYVRGR 217 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E ++L + GV EI LLGQNVN++ GK L+ + TF++LL ++E+ G+ Sbjct: 218 ERSRQPEDIIREVKRLSEEGVKEIMLLGQNVNSY-GKTLE-KPMTFAELLQKVTEVDGIE 275 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP+D+SD LI + + ++HLP+QSGS RIL MNRR+T Y +++D+ Sbjct: 276 RVRFMTSHPKDLSDELIDVIAANEKICRHIHLPMQSGSSRILNQMNRRYTKESYLELVDK 335 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR P+I++++D IVGFPGET++DF TMD+V+++ + AF+F YS R GTP + + Sbjct: 336 IRRQIPEISLTTDIIVGFPGETEEDFLETMDVVNRVRFDTAFTFIYSKRTGTPAATFEDH 395 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLV-GRSPWLQSV 438 + R L K++ E +S + C GQ++ VLIE ++ +L+ GR V Sbjct: 396 ATKEEIQNRFDRLIKRVSE--ISGEEICRYKGQVMPVLIESVSEQNPELLTGRLSNNILV 453 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG+I V + + K G LV Sbjct: 454 HFKGDPSMIGEIRDVSLDECKGFYYMGNLV 483 >gi|261886073|ref|ZP_06010112.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 434 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 164/449 (36%), Positives = 242/449 (53%), Gaps = 20/449 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 V ++ F+++ GC MNV DS + ++ + YE N ++DADLI++NTC +REK K++ Sbjct: 3 VKKKLFIETLGCAMNVRDSEHIIAELSQKENYEVTNIIEDADLILINTCSVREKPVHKLF 62 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S +G K + V GC A G E+ +R+P V+ V+G + ++ L Sbjct: 63 SEVGTYEKAKKKG------AKIGVCGCTASHLGSEVFKRAPYVDFVLGARNISKITTALN 116 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +F ++ D S E F G R +F+ I GCDK CT+C+VP TRG Sbjct: 117 TPKFVSVDINHDES-EYAF--------GDFRSSPYKSFVNIMIGCDKKCTYCIVPQTRGD 167 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKG 259 EIS ++ E RK +G EI LLGQNVN + GK G E FSDLL +SE+ G Sbjct: 168 EISIPKDIILKEVRKAASSGAKEIFLLGQNVNNY-GKRFSGTHENIDFSDLLNLISEVDG 226 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R+T+ HP M D +K + +H+P+QSGS+ ILK+M R +T + Sbjct: 227 VERIRFTSPHPMHMDDKFLKEFSTNPKICKSMHMPLQSGSNEILKAMKRGYTKEWFLDRA 286 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R + D+ IS+D IV FPGE+D DF TM +V+ I + Q FSFKYS R TP ++M Sbjct: 287 LKLREICSDVTISTDIIVAFPGESDRDFADTMSVVESIKFEQMFSFKYSSRPLTPAASMT 346 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 QV+ ++ + RL LQ + E A I EV E+ + + GR+ V Sbjct: 347 NQVNSDIASRRLSTLQARHTEILDEIVKAQKNSIHEVYFEEL-RANSSVAGRTFNNFLVQ 405 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 N +G I+KV+ITD K LYG+++ Sbjct: 406 TNGSEELLGKILKVKITDPKRMVLYGQII 434 >gi|307297843|ref|ZP_07577649.1| RNA modification enzyme, MiaB family [Thermotogales bacterium mesG1.Ag.4.2] gi|306917103|gb|EFN47485.1| RNA modification enzyme, MiaB family [Thermotogales bacterium mesG1.Ag.4.2] Length = 434 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 162/445 (36%), Positives = 258/445 (57%), Gaps = 23/445 (5%) Query: 30 KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 +++GCQMN+ D+ M + G+E S ++AD +++NTC +R K+ +K+Y LG+++ Sbjct: 6 RTFGCQMNINDTEAMMGVLSKAGHEIAVSEEEADAVIVNTCAVRAKSEDKLYGKLGQLKA 65 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 +K K G LLV V GCVA+ E+L V+ V G + R+ ELL RA G+R Sbjct: 66 VK----KRKGRLLVGVCGCVAEKNALELLTHKE-VDFVFGTRAITRVDELLGRAESGERF 120 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 ++ +++ +D R R A++TI GC+KFC++C+VPYTRG E SR++ Sbjct: 121 IEMGDFIDE-------LDSTTPRIRTSAHHAWITIIFGCNKFCSYCIVPYTRGREKSRNM 173 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++ EAR+L NG EIT LGQNV+++ GK L+ + + + L+ EI G+ R+ + T Sbjct: 174 DDILSEARELAVNGYREITYLGQNVDSY-GKDLE-DGSSLAKLIRETIEINGIERIWFLT 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 S+PRD SD LI + + +HLPVQSGS+RILK MNR +T Y ++ R+++ Sbjct: 232 SYPRDFSDELIDVIASSEKVSRAIHLPVQSGSNRILKDMNRGYTREYYLDLLGRVKNRIQ 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDENV 386 +S+D I+GFPGET+ ++ T+ LV ++ + + YSPR GT M + V + V Sbjct: 292 GATLSTDLIIGFPGETEKEYEETVSLVKEVRFERVNLAMYSPREGTLSAKKMKDDVPQEV 351 Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 K R LL +QK + ++ N+ + + I+V+ E K GK+ GR+ + V+ ++ Sbjct: 352 KTRRLNDLLAIQKHINREE---NEKYLNETIDVIGEGKVKGNGKIYGRTMNNKIVIYEAE 408 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 IG +K+RI V LYG +V Sbjct: 409 ADLIGQPVKIRIVRVSAGPLYGVIV 433 >gi|307942735|ref|ZP_07658080.1| protein YleA [Roseibium sp. TrichSKD4] gi|307773531|gb|EFO32747.1| protein YleA [Roseibium sp. TrichSKD4] Length = 239 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 129/216 (59%), Positives = 162/216 (75%) Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 +L LSEI+GL RLRYTTSHPRDM D LI+AH DL LMPYLHLPVQSGSD+ILKSMNR+ Sbjct: 1 MLRRLSEIEGLDRLRYTTSHPRDMDDELIEAHRDLKSLMPYLHLPVQSGSDKILKSMNRK 60 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 HT EY ++IDRIR PDIA+S DFIVGFPGE+D DF TMDL+ ++ Y AFSFKYS Sbjct: 61 HTRDEYFRLIDRIREAAPDIALSGDFIVGFPGESDADFEDTMDLIRRVEYGSAFSFKYSQ 120 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 R GTPG+ M +QV E+VK RL LQ L +QQ +FN + +G + +VL+EK G+ G+LV Sbjct: 121 RPGTPGATMEDQVPEDVKTARLSELQALLTQQQKAFNASRLGMVCDVLLEKKGRLPGQLV 180 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 G+SPWLQ V L++ + IG I V I ++ ++L+G Sbjct: 181 GKSPWLQPVQLDAPENLIGTIQAVEIIEIGSNSLFG 216 >gi|225567940|ref|ZP_03776965.1| hypothetical protein CLOHYLEM_04013 [Clostridium hylemonae DSM 15053] gi|225163228|gb|EEG75847.1| hypothetical protein CLOHYLEM_04013 [Clostridium hylemonae DSM 15053] Length = 477 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 155/376 (41%), Positives = 226/376 (60%), Gaps = 25/376 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P F V ++GCQMN DS ++ + GYE + D+AD ++ NTC +RE A +VY Sbjct: 40 PLTFCVTTFGCQMNARDSEKLRGILERIGYEEA-AEDEADFVIYNTCTVRENANTRVYGR 98 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQTYYRLPELL- 140 LG+++ R +++ + GC+ Q E E L++S V++V G Y+ EL+ Sbjct: 99 LGQLK----PRKSRNPHMMIGLCGCMMQEPEVVEKLKKSYRFVDLVFGTHNIYKFAELIV 154 Query: 141 ERARFGKRVVD----TDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 R G V+D TD VED ER Y+ K GV I GC+ FC++C+V Sbjct: 155 SRFESGGMVIDIWKDTDKIVEDLPNER------KYSFKSGVN----IMFGCNNFCSYCIV 204 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PY RG E SR+ ++ E L+++GV E+ LLGQNVN++ GK LD TF+ LL + Sbjct: 205 PYVRGRERSRAPEAIIREIEHLVEDGVTEVMLLGQNVNSY-GKTLDT-PVTFAALLKEIE 262 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 +I+GL R+R+ TSHP+D+SD LI+ G + +LHLPVQSGS ILK MNR +T +Y Sbjct: 263 KIEGLERIRFMTSHPKDLSDELIEVMGSSHKICRHLHLPVQSGSTDILKKMNRHYTKEQY 322 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 +++ +IR P I++++D IVGFPGET++DF+ T+D+V ++ Y AF+F YS R GTP Sbjct: 323 LELVRKIREAVPGISLTTDIIVGFPGETEEDFQETLDVVRRVRYDSAFTFIYSKRTGTPA 382 Query: 376 SNMLEQVDENVKAERL 391 + M EQV V +R Sbjct: 383 AVMEEQVPGEVVKDRF 398 >gi|222823363|ref|YP_002574937.1| tRNA-i(6)A37 thiotransferase [Campylobacter lari RM2100] gi|222538585|gb|ACM63686.1| tRNA-i(6)A37 thiotransferase [Campylobacter lari RM2100] Length = 432 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 162/449 (36%), Positives = 245/449 (54%), Gaps = 20/449 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + ++ F+++ GC MNV DS M ++ + YE +ADLI++NTC +REK K++ Sbjct: 1 MSKKLFIQTLGCAMNVRDSEHMIAELKEKENYELTQDAKEADLILINTCSVREKPVHKLF 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S +G +K + K G V GC A G+EI +R+P V+ V+G + ++ + + Sbjct: 61 SEVGSFEKIKKNGAKIG------VCGCTASHLGDEIFKRAPNVDFVLGARNVSKITKAVN 114 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +F +D D S + D R ++ I GCDK CT+C+VP+TRG Sbjct: 115 TPKFLGNDIDFDES------NYAFADF---RNSLYKTYVNISIGCDKHCTYCIVPHTRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKG 259 EIS + EA K + NG EI LLGQNVN + GK EK FSDLL LSEI+G Sbjct: 166 EISIPFEIIKKEALKAVANGAKEIFLLGQNVNNY-GKRFSNAHEKINFSDLLEKLSEIEG 224 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+T+ HP M D ++ + +H+P+QSGS ILK+M R +T Y Sbjct: 225 LERIRFTSPHPLHMDDRFLEVFSKNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLDRA 284 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++RS+ D++IS+D IV FPGE+D DF TMD+++K+ + Q FSFKYS R T + M Sbjct: 285 LKLRSMCKDVSISTDVIVAFPGESDKDFEDTMDVLEKVRFEQMFSFKYSKRPLTKAATMP 344 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 Q+ +++ ++RL LQ + E + EVL E+ E G + GRS + Sbjct: 345 NQIPDDIASKRLSILQARHTEILDEIVAKQKDKEFEVLFEELRSE-GFVAGRSDNNFLIQ 403 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +G + KV+IT+ + L GE++ Sbjct: 404 VKGSEELLGQMTKVKITNPRRMVLNGEIL 432 >gi|189502025|ref|YP_001957742.1| hypothetical protein Aasi_0614 [Candidatus Amoebophilus asiaticus 5a2] gi|229890438|sp|B3ES11|MIAB_AMOA5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|189497466|gb|ACE06013.1| hypothetical protein Aasi_0614 [Candidatus Amoebophilus asiaticus 5a2] Length = 486 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 164/458 (35%), Positives = 252/458 (55%), Gaps = 20/458 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + + +V+SYGCQMN+ DS + + G+E ++ + AD+I +NTC IR+KA + V Sbjct: 33 ITRNLYVESYGCQMNIADSEVVVSILRPHGFEITDTYEKADVIFINTCAIRDKAEQTVRK 92 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L + LK + DL++ V GC+A+ + +L +V++V GP Y LP LL Sbjct: 93 RLSQFNQLK----RRNPDLVIGVLGCMAERLKQTLLEEEKLVDLVAGPDAYRDLPRLLAT 148 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G + ++T S E+ + +S + N GV+AF++I GCD C+FCVVP+TRG E Sbjct: 149 VDSGHKAINTFLSREETYADISPIRLNSN---GVSAFISIMRGCDNMCSFCVVPFTRGRE 205 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGEKCT--------FSDLLY 252 SR +V EA +L + G E+TLLGQNV++ W E+ T F+ LL Sbjct: 206 RSRDPYSIVKEATELFEQGYREVTLLGQNVDSYKWSPNTDKKEQPTTPQEGVVNFAQLLA 265 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +++I +R+R++TSHP+D++D ++ D + Y+HLPVQSGS R+LK MNR + Sbjct: 266 MVAQIHPDLRIRFSTSHPKDITDQVLYTIKAYDNICKYIHLPVQSGSSRVLKLMNRTYDR 325 Query: 313 YEYRQIIDRIRS-VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 Y Q I+ IR V D ISSD I GF ET++D + T+ L++ I Y ++ F YS R Sbjct: 326 AWYLQKIEDIRRIVGEDCGISSDMIAGFCTETEEDHQDTLSLMEHIKYEFSYMFYYSERP 385 Query: 372 GT-PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLV 429 GT + V VK RL + K R+ N +G++ +VL+E K+ + Sbjct: 386 GTLAARKYADDVPLAVKKRRLQEIIDKQRQHSFEKNLKDIGKVYQVLVEGPSKKSDIEWQ 445 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 GR+ + VV + + G + V IT+ TL GE+ Sbjct: 446 GRNSANKVVVFPNVDCKKGTYVDVLITNCTTGTLLGEI 483 >gi|160933105|ref|ZP_02080494.1| hypothetical protein CLOLEP_01948 [Clostridium leptum DSM 753] gi|156868179|gb|EDO61551.1| hypothetical protein CLOLEP_01948 [Clostridium leptum DSM 753] Length = 459 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 154/444 (34%), Positives = 241/444 (54%), Gaps = 15/444 (3%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 V++YGCQ NV D +++ M G+ ++AD I+ NTC IRE A ++++ +G + Sbjct: 28 MVRTYGCQQNVSDGEKIKGMLQQMGFGFTEDQEEADFILFNTCAIREHAEDRIFGNVGAL 87 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + LK + L++ + GC+ + E E I + P V++V G + P+L+ Sbjct: 88 KYLK----RRNPSLIIALCGCMMEQEHVVERIRKSYPFVSLVFGTHSLSSFPQLVYETLT 143 Query: 146 GKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + V + E + + DG + A+L + GCD FC++CVVPY RG E S Sbjct: 144 GAKRVFQRGGEDTIDENIPVRRDGRFK------AWLPVMYGCDNFCSYCVVPYVRGRERS 197 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R V+ EAR+LI+ G +ITLLGQNVN++ GK L E F+ LL +S+++G LR Sbjct: 198 REPEAVLKEARQLIEGGYKDITLLGQNVNSY-GKNLP-EPVNFAKLLKEISDMEGDYWLR 255 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D + LI + +LHLP QSG++R+LK MNRR+T +Y +II R Sbjct: 256 FMTSHPKDCTKELIDVMASSGHIAKHLHLPFQSGNNRVLKEMNRRYTREQYLEIIRYARE 315 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P ++I+SD IVGFPGET ++F+ T+ L+ ++G+ ++F +SPR GTP + M + V Sbjct: 316 KMPGLSITSDVIVGFPGETYEEFQDTLSLIREVGFTALYTFIFSPRKGTPAAGMSDPVSH 375 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 K L K E V + VG+ + L+E+ + G L R+ +V + Sbjct: 376 KEKTRWFAELLKVQEEISVRRCASMVGKTVRGLVEEEASKPGVLNARTEENVTVEIPGGP 435 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG + +TD L G + Sbjct: 436 EMIGSFRNILVTDAGNWVLKGNCI 459 >gi|160903280|ref|YP_001568861.1| RNA modification protein [Petrotoga mobilis SJ95] gi|229890590|sp|A9BGV7|MIAB_PETMO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|160360924|gb|ABX32538.1| RNA modification enzyme, MiaB family [Petrotoga mobilis SJ95] Length = 439 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 143/447 (31%), Positives = 251/447 (56%), Gaps = 17/447 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F+++++GCQMN+ +S M + +G+E + +AD+I++N+C +REKA K+Y +G Sbjct: 2 KFYIRTFGCQMNINESEIMAGLLKEEGFEWTENPKEADIILINSCAVREKAENKMYGAIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 LK+ E +L++ V GC A+ E E +L R ++ V G + + L++RA Sbjct: 62 GYGKLKD----ENKNLILGVGGCSAEKERENLLERFKNIDFVFGTRNVVDIGNLVKRALN 117 Query: 146 GKRVVDTDYSVED---KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 GKR D + D ++ I A++TI GC+K+C++C+VPYTRG E Sbjct: 118 GKRFADFSDKLNDVNYDIPKMPISKH--------HAWITIIYGCNKYCSYCIVPYTRGFE 169 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + ++ E G EIT LGQNV+++ GK +K L+ +E + R Sbjct: 170 KSRPMEDIIREVESYAKKGYKEITFLGQNVDSY-GKDFGDKKSKLDLLIQKAAEFDSIKR 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 + + TS+P D++D LI+ + + Y HLP QSGS++ILK+MNR++T E+ ++++++ Sbjct: 229 IWFLTSYPSDITDSLIQTVANEEKAANYFHLPAQSGSNKILKAMNRKYTREEFIELVNKV 288 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQ 381 + ++ +SSDFI GFP ETD+DF T+DL+ + + + +YSPR GT + Sbjct: 289 KKEVANVTVSSDFITGFPSETDEDFEETVDLIKQCRFERINIAEYSPREGTIAYKYQNDD 348 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V +++K +RL L + + + N+ + Q + ++ E + G +GR+ + ++ Sbjct: 349 VPKHIKNKRLQYLMELQKRINLEENEKYLEQEVVIIQEGKAGKNGTYMGRTMNNKLIIFE 408 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 S G+ +KV++ + LYGE+V Sbjct: 409 SNEELNGEFLKVKVNKITPGPLYGEVV 435 >gi|317056657|ref|YP_004105124.1| RNA modification enzyme, MiaB family [Ruminococcus albus 7] gi|315448926|gb|ADU22490.1| RNA modification enzyme, MiaB family [Ruminococcus albus 7] Length = 465 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 159/445 (35%), Positives = 243/445 (54%), Gaps = 21/445 (4%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 ++ SYGCQ NV D +++ M GY + D A LI+LNTC +RE A ++V+ +G Sbjct: 36 YIHSYGCQQNVSDGEKLKGMLDKIGYGFTDDTDTAQLILLNTCAVRENAEDRVFGNIGNF 95 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144 + LK ++ DL++ + GC+AQ + ++I V++V G Y +L E Sbjct: 96 KKLK----EQNKDLVIGICGCMAQQKHVADKIKESYRQVDLVFGTFAYNEFYSMLWEIIS 151 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 KR+ + + E ++ + R AF+ I GC+ FCT+C+VPY RG E S Sbjct: 152 KHKRLFNQSEVCTEIDESMTQL-----RDDKFRAFVPIMYGCNNFCTYCIVPYVRGRERS 206 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R V+ E + L++ G EITLLGQNVN++ F LL + +I+G R+R Sbjct: 207 RKPEAVLAEVKSLVEQGYKEITLLGQNVNSY--------AYGFPQLLKDIDKIQGKFRIR 258 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + +SHP+D + LI D + + +LHLPVQ+GSDR+LK+MNRR+T +Y ++ID R Sbjct: 259 FMSSHPKDATKELIDTIIDSEHICKHLHLPVQAGSDRVLKAMNRRYTTEKYLEMIDYARG 318 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P + ++D IVGFPGE+ ++F T D++ ++ Y +SF YS R GTP + M + + + Sbjct: 319 RMPHFSFTTDLIVGFPGESYEEFCQTKDIIKRVKYDNIYSFVYSRRSGTPAAKMEDNISD 378 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSK 443 K L L + RE + VGQ +EVL E G+ +G L G++ V + Sbjct: 379 KQKGLWLRELLLEQREITCEWFGRFVGQTVEVLAEGEGRTAEGWLTGKNDENIIVEFPAD 438 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 IG+ +KVRI L GELV Sbjct: 439 KKYIGEFVKVRINKAMNWALSGELV 463 >gi|255280937|ref|ZP_05345492.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bryantella formatexigens DSM 14469] gi|255268385|gb|EET61590.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bryantella formatexigens DSM 14469] Length = 518 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 161/441 (36%), Positives = 243/441 (55%), Gaps = 14/441 (3%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 K++GCQMN DS ++ + GY + + ADL++ NTC +RE A KVY LG + Sbjct: 87 TKTFGCQMNARDSEKLTGILELIGYT-ITEDEHADLVIYNTCTVRENANLKVYGRLGVLG 145 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +K K+ L+ + GC+ Q E+I + V+++ G Y+ ELL G Sbjct: 146 GMK----KKQPHKLIALCGCMMQEPEVVEKIRKSYRFVDLIFGTHNIYKFAELLAACLEG 201 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++ + DK V+ Y K GV I GC+ FC++C+VPY RG E SR Sbjct: 202 DGMIIDVWKDTDKIVENLPVERKYPFKSGVN----IMFGCNNFCSYCIVPYVRGRERSRE 257 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +++ E +L +GV E+ LLGQNVN++ GK L E +F+ LL + +I G+ R+R+ Sbjct: 258 PREILREIERLAADGVVEVMLLGQNVNSY-GKNLP-EPMSFAQLLREVEKIDGIKRIRFM 315 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHP+D+SD LI+ + + ++HLP+QSGS RILK MNRR+T +Y +++++R Sbjct: 316 TSHPKDLSDELIEVMASSEKICRHMHLPLQSGSSRILKIMNRRYTKEQYLALVEKLRRAI 375 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDI++++D IVGFPGET++DF T+D+V + Y AF+F YS R GTP + M QV E V Sbjct: 376 PDISLTTDIIVGFPGETEEDFEETLDVVRRARYDSAFTFIYSKRTGTPAAAMENQVPEEV 435 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L ++E GQ + VL E+ + ++ L GR V Sbjct: 436 VKERFDRLLALVQEISGEMAARLTGQTLPVLAEEVNSQDASLLTGRLSNNLLVHFPGDAS 495 Query: 446 NIGDIIKVRITDVKISTLYGE 466 IG I+ V + + + GE Sbjct: 496 LIGKIVDVHLQECRGFYYMGE 516 >gi|167467943|ref|ZP_02332647.1| hypothetical protein YpesF_08599 [Yersinia pestis FV-1] Length = 321 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 134/286 (46%), Positives = 184/286 (64%), Gaps = 1/286 (0%) Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243 EGC+K+CTFCVVPYTRG E+SR ++ E +L GV E+ LLGQNVNA+RG DG+ Sbjct: 2 EGCNKYCTFCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAYRGATYDGD 61 Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 C+F++LL ++ I G+ R+R+TTSHP + +D +I + D L+ +LHLPVQSGSDRIL Sbjct: 62 ICSFAELLRLVAAIDGIDRVRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRIL 121 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 M R HTA EY+ II ++R RPDI ISSDFIVGFPGET DF TM LV I + ++ Sbjct: 122 TMMKRAHTALEYKAIIRKLRQARPDIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSY 181 Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 SF YSPR GTP +++ V E K +RL LQ+++ +Q + + VG + VL+E + Sbjct: 182 SFIYSPRPGTPAADLPNNVSEEEKKQRLHILQQRISQQAMEISRKMVGTVQRVLVEGTSR 241 Query: 424 EK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +L GR+ + V IG + V I +V S+L G L+ Sbjct: 242 KNVMELAGRTENNRVVNFEGSPDMIGKFVDVEIVNVYASSLRGILL 287 >gi|153951503|ref|YP_001398505.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. doylei 269.97] gi|229890470|sp|A7H4S5|MIAB_CAMJD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|152938949|gb|ABS43690.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter jejuni subsp. doylei 269.97] Length = 433 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 158/447 (35%), Positives = 246/447 (55%), Gaps = 20/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS M ++ + Y + +ADLI++NTC +REK K++S Sbjct: 4 KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G +K KEG + V GC A G EI +R+P V+ V+G + ++ + ++ Sbjct: 64 VGGFEKVK----KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTP 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +F +D DY E +F + Y +++ I GCDK CT+C+VP+TRG EI Sbjct: 118 KFMG--IDIDYD-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEI 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLV 261 S + + EA+K ++ G EI LLGQNVN + GK E K FSDLL LS I+ L Sbjct: 169 SIPFNIIHKEAQKAVEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEDLE 227 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP M D ++ + + +H+P+QSGS ILK+M R +T Y + Sbjct: 228 RIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKKWYLNRALK 287 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R + P+++IS+D IV FPGE++ DF TMD+++K+ + Q FSFKYS R T + M Q Sbjct: 288 LRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMSNQ 347 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 +DE + RL LQ + E + +VL E+ + + GR+ V + Sbjct: 348 IDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEEL-RVGNSIAGRTDNNFLVQVE 406 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G +V+IT+ K LYGE++ Sbjct: 407 GSEELLGQFKEVKITNAKRMVLYGEII 433 >gi|325479264|gb|EGC82360.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaerococcus prevotii ACS-065-V-Col13] Length = 449 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 163/450 (36%), Positives = 260/450 (57%), Gaps = 21/450 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ + ++GCQMN +DS R+ + GYE+ + + AD I+ NTC +RE A K+Y + Sbjct: 14 KKYNITTFGCQMNEHDSERISYILEELGYEKTENRESADFILFNTCLVRENAELKLYGQV 73 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 ++ LK KE + ++ V+GC+ Q + I+ + V+++ G + L +L+ R Sbjct: 74 SSLKKLK----KEHPEKIIAVSGCMMQTSTARQVIIDKHKEVDIIFGTKNINSLADLIFR 129 Query: 143 -ARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 +RV+D TD V+D F YN A++ I GCD FC++C+VP +R Sbjct: 130 YLETNERVIDISTD-DVKDDF-------VNYNTLNNFQAYVNIMRGCDNFCSYCIVPESR 181 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR S +++E L+ G E+TLLGQNVN++ G D + TF +LL +S++ G Sbjct: 182 GREESRRPSAILEEVEHLVSEGYKEVTLLGQNVNSY-GNKADFD-MTFPELLQKVSDVAG 239 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L RLR+TTSHP+D+SD LI+ + D + Y HLP+QSGS ++LK MNR++ +Y + Sbjct: 240 LKRLRFTTSHPKDLSDELIEVIKNNDNICKYFHLPLQSGSSKVLKDMNRKYDQEKYIERA 299 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R P IAIS+D IVG+P ET++DF T+ + +I Y A++FKYSPR T + L Sbjct: 300 KKLRKEIPGIAISTDIIVGYPTETEEDFEETLKVCREIAYDSAYTFKYSPRPKTRAAK-L 358 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438 +++++ +R L L N +G+ +EVL+E K L GR+ + V Sbjct: 359 TPIEDDIVQDRFDRLLDTLYPIFYEKNKQYIGKTVEVLLESESKNNPDILTGRTDTFKLV 418 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG+ +KV+IT+ T+ GELV Sbjct: 419 HVKADKKLIGEFVKVKITENTSFTISGELV 448 >gi|126291872|ref|XP_001381790.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 653 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 153/431 (35%), Positives = 240/431 (55%), Gaps = 26/431 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV D+ + GY R N++ +AD+I+L TC IREKA + +++ L Sbjct: 166 RKVYLETYGCQMNVNDAEIAWAILQKSGYLRTNTLHEADVILLVTCSIREKAEQAIWNRL 225 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R++ +K R++ L + + GC+A+ EEIL R +V++V GP Y LP LL A Sbjct: 226 KRLKFIKARRLRSQVPLRIGILGCMAERLKEEILHREKLVDIVAGPDAYRDLPRLLSLAD 285 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+R + S+E+ + + V N +AF++I GCD C++C+VP+TRG E S Sbjct: 286 SGQRSANVLLSLEETYADIMPVQTSSN---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 342 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK---------------GLDGEKCT--- 246 R ++ +++E +KL G+ E+TLLGQNVN+++ K G T Sbjct: 343 RPIASILEEVKKLSQQGLKEVTLLGQNVNSYQDKSEMQFNNAMPTHLSRGFSENYKTKKG 402 Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 F+DLL +S + +R+R+T+ HP+D D +++ + + + +HLP QSGS+R+L Sbjct: 403 GLRFADLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIQERNNICKQIHLPAQSGSNRVL 462 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 + M R +T Y +I IR + +SSDFI GF GET+DD T+ L+ ++ Y F Sbjct: 463 ELMRRGYTREAYLDLIHHIRESVSGVNLSSDFIAGFCGETEDDHLQTLSLLQEVRYNVGF 522 Query: 364 SFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 F YS R T + L+ V E VK RL L RE N A VG + +L+E Sbjct: 523 LFAYSMRQKTRAYHRLQDDVPEEVKQRRLAELIAAFREGATEANMAMVGHMQLILVEGPS 582 Query: 423 KEK-GKLVGRS 432 K +L GR+ Sbjct: 583 KRSTTELCGRN 593 >gi|157736509|ref|YP_001489192.1| tRNA-methylthiotransferase [Arcobacter butzleri RM4018] gi|229890442|sp|A8ERE9|MIAB_ARCB4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|157698363|gb|ABV66523.1| tRNA-methylthiotransferase [Arcobacter butzleri RM4018] Length = 436 Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 152/450 (33%), Positives = 262/450 (58%), Gaps = 25/450 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRME-DMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GCQMN DS ++ ++ +GY +++DADLI++NTC +RE+ +K++S Sbjct: 5 KKLFIQTLGCQMNDTDSQHIQAELEKHKGYVTTQNIEDADLIIINTCSVRERPVQKLFSE 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G+ N + KEG + V GC A G++I++R+P V+ VVG + ++ ++++ Sbjct: 65 IGQF----NKKKKEGAK--IGVCGCTASHLGQDIIKRAPYVDFVVGARNISKIKDVVDVK 118 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + +D D E +E + Y A + I GCDK CT+C+VP TRG EI Sbjct: 119 GAVEVSIDND---ESTYEFSTAKTNKYR------ASVNISVGCDKKCTYCIVPSTRGEEI 169 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVR 262 S +V++ RK ++ G E+ LLGQNVN++ K D EK TF+ LL +S+I GL R Sbjct: 170 SIPPEMIVEQVRKSVEQGAVEVMLLGQNVNSYGRKFSDKREKYTFTKLLQDVSKIDGLER 229 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP M D I+ + +H+P+QSGS +LK+M R ++ + ++ Sbjct: 230 IRFTSPHPLHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGYSKEWFLNRASKM 289 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 R + P++ I++D IV FPGET +DF T+D+V+++ + Q F+FKYSPR GT N+ + + Sbjct: 290 RELVPNLRITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPRPGTEALNLKDKE 349 Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 + + + ++R L+ L K+ E+ + +G+ + +L+E K G++ G + V Sbjct: 350 LPDEIGSQRLIDLIELHKRYLEESMP---KLIGETLNILVESL-KPNGEVCGYTDNYLQV 405 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +G + V+ITDV ++L GE+V Sbjct: 406 FAKGSDELLGKFVNVKITDVTRTSLKGEVV 435 >gi|293977904|ref|YP_003543334.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Sulcia muelleri DMIN] gi|292667835|gb|ADE35470.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Sulcia muelleri DMIN] Length = 455 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 154/461 (33%), Positives = 260/461 (56%), Gaps = 29/461 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN+ DS + + ++G+ + ++ +A++I++NTC IR+K+ +K+ + Sbjct: 4 KKFYIENYGCQMNISDSEIVSSILNNKGFIKTENLKEANIILINTCSIRDKSEKKILLRI 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +I+ + IK+ D+L+ + GC+A ++ ++N+VVGP +Y +P L+ Sbjct: 64 NQIKFI----IKKNNDILIGILGCMASKFKN--IKEKKLINLVVGPDSYREIPNLINNF- 116 Query: 145 FGKR----VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 F K+ + T +S + + I+ +K +TAF+TI GCD CTFCVVP+TRG Sbjct: 117 FKKKGEYISISTSFSKTETYA--DIIPKREEKK--ITAFVTIMRGCDNMCTFCVVPFTRG 172 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL----------DGEKCTFS 248 E SR ++ E + L G EI LLGQNV++ W G GL + E FS Sbjct: 173 REKSRDPYSIIKECKFLFKKGYKEIILLGQNVDSYLWYGGGLKKKFKIKEIKNEEIINFS 232 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 LL ++ L+R+R+ TS+P DMSD ++ + ++HLPVQSGS+RIL MNR Sbjct: 233 KLLELVAISVPLMRIRFCTSNPNDMSDNVLNVIKKYINICKHIHLPVQSGSNRILSLMNR 292 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 +HT +Y +I++I+ + P+ ++S D I GF E ++D T++L++ + Y ++ F YS Sbjct: 293 KHTCEDYILLINKIKKIIPNCSLSCDIITGFCNENENDHNETLNLMNYVKYNFSYMFIYS 352 Query: 369 PRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKG 426 R+GT +++ V + K RL + + N +G I ++LIE K Sbjct: 353 HRIGTYAYKKLIDNVSLSTKKRRLTEIINLQKTHSYYRNRKYIGSIQDILIEGISTKNIN 412 Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 GR+ V+ KN+ IGD IKV+I + +TL G++ Sbjct: 413 FFYGRNSGNDIVIFTKKNYKIGDFIKVKINNCTSATLVGDI 453 >gi|325474131|gb|EGC77319.1| hypothetical protein HMPREF9353_01669 [Treponema denticola F0402] Length = 451 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 156/458 (34%), Positives = 253/458 (55%), Gaps = 27/458 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +F ++YGCQMN +S ME + +G+ + + DL+++NTC +R A +V LG Sbjct: 3 YFFETYGCQMNQAESSSMEQVLIEKGWTDASDAEHCDLLIINTCSVRITAENRVLGRLGH 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 LK R V++ GC+A+ EI + P+++ VVG LP++ + + Sbjct: 63 FSGLKKKR-----KFFVLLIGCMAERLYTEIQKEFPLIDYVVGMFERNLLPQIFDEIK-- 115 Query: 147 KRVVDTDYSVEDKFERLS--IVDGGY-----NRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 R+ D +Y E + V G Y + + +++ I GC+ FCT+C+VPY R Sbjct: 116 TRLKDDNYMAEFTHNNIEEKPVSGYYFAPLSHSPKSFQSYVPIMNGCNNFCTYCIVPYVR 175 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS---E 256 G E+SR +++++ E +L GV EITLLGQNVN+++G+ +G F LL ++ + Sbjct: 176 GREVSRPVNEILQEITELSSRGVREITLLGQNVNSYKGEDGEGRVIDFPKLLTLIAREAD 235 Query: 257 IKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 ++R +R+ +SHP+DMSD LI L +HLPVQ GSD ILK MNR +T Y Sbjct: 236 KTDMIRWIRFMSSHPKDMSDALIDTIAAEKRLCKLVHLPVQHGSDTILKRMNRVYTIEHY 295 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + I R++ PDIA+S+D ++GFPGET+DD +A +DL+ +I + AF + Y+PR GT Sbjct: 296 KNRIKRLKETIPDIALSTDILMGFPGETEDDVKAILDLMQEIEFDSAFMYHYNPREGTKA 355 Query: 376 SNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGR 431 N +++ E +K ERL + LQ K+ A +G+ +++L+E H + E+ +L G Sbjct: 356 FNYPDRIPEEIKIERLGRVIDLQLKI---TAKKMKAKLGKKVDILVESHSRNERSELFGH 412 Query: 432 SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467 + + V+ N IG+ + ++K T L Sbjct: 413 TEQGEMTVIQGNPPESLIGNFAHAELKELKGKTFRANL 450 >gi|108804264|ref|YP_644201.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rubrobacter xylanophilus DSM 9941] gi|108765507|gb|ABG04389.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rubrobacter xylanophilus DSM 9941] Length = 445 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 156/438 (35%), Positives = 239/438 (54%), Gaps = 30/438 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 ++++GCQMNV+DS RM M GY V +DADL++LNTC++RE A ++ LG + Sbjct: 33 IRTFGCQMNVHDSDRMRRMILDAGYAEVQRYEDADLVILNTCYVRENAVNRIRGHLGELN 92 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L+ +EG V + GC+ ++ L+ +++V+G Y L E + G Sbjct: 93 RLR----REGRVKKVALTGCIGASDEAAELQEQYGIDLVLGTHNTYELAEFI-----GLP 143 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ Y+ E L V+G +AF+TI GC+ C++CVVP RG + R L Sbjct: 144 TMEETYTPE-----LPGVEGQK------SAFVTIMTGCNYRCSYCVVPRVRGRMVCRPLE 192 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V++E R+L+ +G ITLLGQ V+AWR E+ F DLL +++E R+ +TTS Sbjct: 193 NVLEEVRRLVRSGTNYITLLGQTVDAWRH-----ERRRFCDLLEAVAE--EAPRVWFTTS 245 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 HP +M D ++A G+ D ++ LHLPVQSGSDR+LK M+R + A YR+ I+ R PD Sbjct: 246 HPSNMEDRTLRAIGERDTIVKKLHLPVQSGSDRMLKMMHRGYGADRYRRKIEVFREHVPD 305 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +S+D IVG PGET++D AT+ L++ + A+ FK+SPR GT + M V V Sbjct: 306 GTLSTDIIVGHPGETEEDHEATLRLIEDCQFDSAYIFKFSPRRGTEAAQMEGAVPPGVVQ 365 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNI 447 R L + + + + N VG E+ I +HG+ + G+ +G + W V Sbjct: 366 RRFLEVLRAVEQNAFRRNQRKVGGTEEIYI-RHGRSDSGRAIGET-WSGHAVHVDTEAGP 423 Query: 448 GDIIKVRITDVKISTLYG 465 G+ ++ RI LY Sbjct: 424 GEYVRARIESAGPHVLYA 441 >gi|94985469|ref|YP_604833.1| tRNA-i(6)A37 modification enzyme MiaB [Deinococcus geothermalis DSM 11300] gi|123381901|sp|Q1IYM0|MIAB_DEIGD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|94555750|gb|ABF45664.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Deinococcus geothermalis DSM 11300] Length = 459 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 169/452 (37%), Positives = 250/452 (55%), Gaps = 30/452 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + +YGCQMN YD+ +E S G + V+S+D+AD +++NTC +R K +KV S LG Sbjct: 2 RAHLITYGCQMNEYDTHLVESQLVSFGADIVSSVDEADFVLINTCAVRGKPVDKVRSLLG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143 +R K R L+V + GC+AQ EG++I R+ V+V++GP + + + LE Sbjct: 62 DLRKQKAQR-----PLVVGMMGCLAQLEEGQQIARKFE-VDVLLGPGSLLDIGKALETNE 115 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 RF + ++ K E + K + A LTI GCD CT+C+VP TRG ++ Sbjct: 116 RF--------WGLQFKDELHGHIPPPPQGK--LQAHLTIMRGCDHHCTYCIVPTTRGPQV 165 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIKGL 260 SR ++ E L+ GV E+TLLGQNVNA+ +G L G +F++LL L G+ Sbjct: 166 SRHPDDILRELDLLLAAGVQEVTLLGQNVNAYGVDQGARLAGYP-SFANLL-RLVGRSGI 223 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+++TTSHP + ++ + A + + Y+HLPVQSGS+R+L+ M R +T +Y I Sbjct: 224 RRVKFTTSHPMNFTEDVAAAMAETPAVCEYVHLPVQSGSNRVLRRMAREYTREKYLSHIA 283 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR PD+ +++D IVGFPGET++DF+ T+ L D++GY A+ F YS R GTP Sbjct: 284 EIRRHLPDVVLATDIIVGFPGETEEDFQETLSLYDEVGYDAAYMFIYSARPGTPSYKHFA 343 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE----KGKLVGRSPWLQ 436 + VK ERL L K +E N A VG I EVL+ + +G G P Sbjct: 344 DLPREVKTERLQRLIAKQKEWSARKNAAKVGTIQEVLLRGDAHDAHFLEGHTRGNHP--- 400 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +VV + + I + RI LYG L+ Sbjct: 401 TVVPKAAGASGPGIYRARIEHATPHMLYGRLI 432 >gi|315635668|ref|ZP_07890931.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Arcobacter butzleri JV22] gi|315479965|gb|EFU70635.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Arcobacter butzleri JV22] Length = 436 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 151/450 (33%), Positives = 262/450 (58%), Gaps = 25/450 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRME-DMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GCQMN DS ++ ++ +GY +++DADLI++NTC +RE+ +K++S Sbjct: 5 KKLFIQTLGCQMNDTDSQHIQAELEKHKGYVTTQNIEDADLIIINTCSVRERPVQKLFSE 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G+ N + KEG + V GC A G++I++R+P V+ VVG + ++ ++++ Sbjct: 65 IGQF----NKKKKEGAK--IGVCGCTASHLGQDIIKRAPYVDFVVGARNISKIKDVVDVK 118 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + +D D E +E + Y A + I GCDK CT+C+VP TRG EI Sbjct: 119 GAVEVSIDND---ESTYEFSTAKTNKYR------ASVNISVGCDKKCTYCIVPSTRGEEI 169 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVR 262 S +V++ RK ++ G E+ LLGQNVN++ + D EK TF+ LL +S+I GL R Sbjct: 170 SIPPEMIVEQVRKSVEQGAVEVMLLGQNVNSYGRRFSDKREKYTFTKLLQDVSKIDGLER 229 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP M D I+ + +H+P+QSGS +LK+M R ++ + ++ Sbjct: 230 IRFTSPHPLHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGYSKEWFLNRASKM 289 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 R + P++ I++D IV FPGET +DF T+D+V+++ + Q F+FKYSPR GT N+ + + Sbjct: 290 RELVPNLRITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPRPGTEALNLKDKE 349 Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 + + + ++R L+ L K+ E+ + +G+ + +L+E K G++ G + V Sbjct: 350 LPDEIGSQRLIDLIELHKRYLEESMP---KLIGETLNILVESL-KPNGEVCGYTDNYLQV 405 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +G + V+ITDV ++L GE+V Sbjct: 406 FAKGSDELLGKFVNVKITDVTRTSLKGEVV 435 >gi|291388708|ref|XP_002710877.1| PREDICTED: CDK5 regulatory subunit associated protein 1 [Oryctolagus cuniculus] Length = 588 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 158/476 (33%), Positives = 258/476 (54%), Gaps = 38/476 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV D+ + GY R + + +AD+I+L TC IREKA + +++ L Sbjct: 101 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSDLQEADVILLVTCSIREKAEQTIWNRL 160 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++ LK R++ G L + + GC+A+ EEIL R +V+++ GP Y LP LL Sbjct: 161 RQLKALKTKRLRSRGPLRIGILGCMAERLKEEILNREKMVDLLAGPDAYRDLPRLLAVTE 220 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ + S+++ + + V +AF++I GCD C++C+VP+TRG E S Sbjct: 221 SGQQAANVLLSLDETYADVMPVQASPG---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 277 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDGEKCT--- 246 R ++ +++E R+L + G+ E+TLLGQNVN++R +G T Sbjct: 278 RPVASILEEVRQLSEQGLKEVTLLGQNVNSFRDNSEIQFNNAVPTNLSRGFTTNYKTKQG 337 Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 F+ LL +S I +R+R+T+ HP+D D +++ G+ D + +HLP QSGS R+L Sbjct: 338 GLRFAHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIGERDNICKQIHLPAQSGSSRVL 397 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 ++M R ++ Y +++ IR P +++SSDFI GF GET++D T+ L+ ++ Y F Sbjct: 398 EAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLREVRYNIGF 457 Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 F YS R T + L + V E VK RL L RE+ N + VG+ VL+E Sbjct: 458 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKVNRSSVGRTELVLVEGLS 517 Query: 423 KEKGK-LVGRS--------PWLQSVVLNSKNHNI----GDIIKVRITDVKISTLYG 465 K L GR+ P ++ + S + GD + V+IT TL G Sbjct: 518 KRSASDLCGRNDGNLKVIFPDVEMEDVASPGLRVRAQPGDYVLVKITSASSQTLKG 573 >gi|317418553|emb|CBN80591.1| CDK5 regulatory subunit-associated protein 1 [Dicentrarchus labrax] Length = 569 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 155/476 (32%), Positives = 259/476 (54%), Gaps = 48/476 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + ++YGCQMNV D+ + +GY+R + +AD+++L TC IREKA + +++ L Sbjct: 94 RKVYFETYGCQMNVNDTDIAWSILQRKGYQRTVDLREADVVLLVTCSIREKAEQTIWNRL 153 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ +K R+K + + + GC+A+ EIL R +V+V+ GP Y LP LL A Sbjct: 154 QELKAMKKRRLKTHTPMKIGILGCMAERLKTEILEREKLVDVLAGPDAYRDLPRLLTVAD 213 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ + S+E+ + + V ++ +G +AF++I GCD C++C+VP+TRG E S Sbjct: 214 GGQQASNVLLSLEETYADVMPV---HHAPQGRSAFVSIMRGCDNMCSYCIVPFTRGRERS 270 Query: 205 RSLSQVVDEARKLIDN--------GVCEITLLGQNVNAWRGKGLDGEKCT---------- 246 R +S +++E R L + GV E+TLLGQNVN++R + + C+ Sbjct: 271 RPVSSILEEVRMLSEQASYNLNTKGVKEVTLLGQNVNSYRDTS-EEQFCSSDLTQLSRGF 329 Query: 247 ------------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 FSDLL +S I +R+R+T+ HP+D D ++ + + +HLP Sbjct: 330 KTVYRTKQGGLRFSDLLDRVSRIDPDMRIRFTSPHPKDFPDEVLHLIAERGNICQQIHLP 389 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 QSGS ++L++M R +T Y ++ I+++ P++++SSDFI GF GET+DD + T+ L+ Sbjct: 390 AQSGSSKVLEAMRRGYTREAYLDLVKNIKAIMPEVSLSSDFISGFCGETEDDHQQTLSLI 449 Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413 ++GY F F YS R T + L+ V VK +RL + RE+ N A +G + Sbjct: 450 REVGYNVGFLFAYSMRKKTHAFHRLQDDVPAEVKQQRLAECIRVFREEAARVNAALIGSM 509 Query: 414 IEVLIEKHGKEKGK-LVGRSPWLQSVVL------------NSKNHNIGDIIKVRIT 456 VL+E K K L GR+ V+ N+ N GD + V+++ Sbjct: 510 QLVLVEGESKRSAKDLCGRTDGNMKVIFPKEDVAAQNAESNTAPVNAGDYVLVKVS 565 >gi|50758889|ref|XP_417464.1| PREDICTED: hypothetical protein [Gallus gallus] Length = 562 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 160/478 (33%), Positives = 254/478 (53%), Gaps = 38/478 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGCQMNV D+ + GY R D+AD+I+L TC +R+KA + +++ L Sbjct: 76 KVYLETYGCQMNVNDTEIAWAILQKSGYTRTKEADEADVILLVTCSVRDKAEQTIWNRLQ 135 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 ++ LK R + L + + GC+A+ EEIL R +V++V GP Y LP LL A Sbjct: 136 HLKALKARRHQACLPLRIGILGCMAERLKEEILHREKLVDIVAGPDAYRDLPRLLAMAES 195 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G++ + S+++ + + V G TAF++I GCD C++C+VP+TRG E SR Sbjct: 196 GQQAANVLLSLDETYADILPVQTSAG---GKTAFVSIMRGCDNMCSYCIVPFTRGRERSR 252 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDGEKCT---- 246 ++ ++ E + L D GV E+TLLGQNVN++R +G T Sbjct: 253 PIASILQEVKMLSDQGVKEVTLLGQNVNSFRDMSEVQFQSAAAPVLSRGFSTVYKTKPGG 312 Query: 247 --FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 F+ LL +S I +R+R+T+ HP+D D +++ + + LHLP QSGS R+L+ Sbjct: 313 LRFAHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIQERHNICKQLHLPAQSGSTRVLE 372 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 +M R +T Y +++ +R+ P +++SSDFI GF GET++D + T+ L+ ++ Y F Sbjct: 373 AMRRGYTREAYLELVQHVRNTIPGVSLSSDFIAGFCGETEEDHQQTVSLLREVRYNIGFL 432 Query: 365 FKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 F YS R T + L+ V +VK RL L RE+ N+A VGQ VL+E K Sbjct: 433 FAYSMRQKTRAYHRLQDDVPADVKQRRLEELITVFREEAARANEAMVGQSQLVLVEGPSK 492 Query: 424 EKG-KLVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468 +L GR+ V+ + GD + V++T TL G L+ Sbjct: 493 RSASELCGRNDGNIKVIFPDADTEDAGGCKALVRAQPGDYVLVKVTSASSQTLKGVLL 550 >gi|326932093|ref|XP_003212155.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like [Meleagris gallopavo] Length = 541 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 162/488 (33%), Positives = 258/488 (52%), Gaps = 38/488 (7%) Query: 16 QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 IV + V + ++++YGCQMNV D+ + GY R D+AD+I+L TC +R+K Sbjct: 45 HIVGKLTVGRELYLETYGCQMNVNDTEIAWAILQKSGYTRTKEADEADVILLVTCSVRDK 104 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A + +++ L ++ LK R + L + + GC+A+ EEIL R +V++V GP Y Sbjct: 105 AEQAIWNRLQHLKALKARRRQACLPLRIGILGCMAERLKEEILHREKLVDIVAGPDAYRD 164 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 LP LL A+ G++ + S+++ + + V G TAF++I GCD C++C+V Sbjct: 165 LPRLLAVAQSGQQAANVLLSLDETYADILPVQTSAG---GKTAFVSIMRGCDNMCSYCIV 221 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240 P+TRG E SR ++ ++ E + L D GV E+TLLGQNVN++R +G Sbjct: 222 PFTRGRERSRPIASILQEVKILSDQGVKEVTLLGQNVNSFRDMSEVQFQSAAAPVLSRGF 281 Query: 241 DG------EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 F+ LL +S I +R+R+T+ HP+D D +++ + + LHLP Sbjct: 282 STVYKAKPGGLRFAHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIQERHNICKQLHLP 341 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 QSGS R+L++M R +T Y +++ +R+ P +++SSDFI GF GET++D + T+ L+ Sbjct: 342 AQSGSTRVLEAMRRGYTREAYLELVQHVRNSIPGVSLSSDFIAGFCGETEEDHQQTVSLL 401 Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413 ++ Y F F YS R T + L+ V +VK RL L RE+ N+A VGQ Sbjct: 402 REVRYNVGFLFAYSMRQKTRAYHRLQDDVPADVKRRRLEELITVFREEAARANEAMVGQS 461 Query: 414 IEVLIEKHGKEKG-KLVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKI 460 VL+E K +L GR+ V+ + GD + V++T Sbjct: 462 QLVLVEGPSKRSASELCGRNDGNIKVIFPDADTEDAGGCKALVRAQPGDYVLVKVTSASS 521 Query: 461 STLYGELV 468 TL G L+ Sbjct: 522 QTLKGILL 529 >gi|302037248|ref|YP_003797570.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB [Candidatus Nitrospira defluvii] gi|300605312|emb|CBK41645.1| Isopentenyl-adenosine A37 tRNA methylthiolase MiaB [Candidatus Nitrospira defluvii] Length = 452 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 158/452 (34%), Positives = 242/452 (53%), Gaps = 25/452 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P ++++GCQMN YDS + + G+E + AD++++NTC IRE A KVY Sbjct: 7 PHTVHIETFGCQMNEYDSELVRSLLRKAGFEFTEDRERADVMLMNTCAIRENAHNKVYGH 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140 L ++ +K R L+V V GC+AQ EE+ + P+V+V+VGP Y +LP LL Sbjct: 67 LAELKAVKEQR-----PLVVGVLGCMAQNLKEELTEKQPLVDVLVGPDGYRQLPGLLTNA 121 Query: 141 ---ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 E +R + D S + ++ D R A++ I GCD FC+FCVVPY Sbjct: 122 LNAEEQGLARRGMAVDLSEYETYD-----DILPERDCSSNAWIAIMRGCDNFCSFCVVPY 176 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 TRG E SR ++ E + G +ITLLGQNVN++R + D F+ L+ +++E+ Sbjct: 177 TRGRERSRDPQGILREVEASVATGHTQITLLGQNVNSYRYEDWD-----FARLILAVAEV 231 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 G+ R+R+T+ HP+D L+ A + ++HLP+QSG+DRIL+ MNR ++ EY Sbjct: 232 PGVRRVRFTSPHPKDFPAALLDAVAGHPNICKHIHLPLQSGNDRILELMNRTYSRKEYLD 291 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + IR P IA+++D I GF ET+++F T +V+++ Y A+ FKYS R T + Sbjct: 292 LAAHIRRRHPGIALTTDIICGFCSETEEEFLDTYRVVEEVQYHSAYVFKYSERKNTIAAR 351 Query: 378 ML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWL 435 + V E VK ER+ L R N +GQ + V++E K + +GR+ Sbjct: 352 KFPDDVPEAVKGERVSRLVDLQRPITARLNRELIGQTLPVMVEGDSKRSTDQWMGRTDTG 411 Query: 436 QSVVLNSKNHN--IGDIIKVRITDVKISTLYG 465 V+ N + +G I V I D + L G Sbjct: 412 VYVIWNKSDAPALLGSIQPVTILDGSAAVLMG 443 >gi|115313109|gb|AAI24421.1| Zgc:162738 protein [Danio rerio] Length = 555 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 248/478 (51%), Gaps = 39/478 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + ++YGCQMN D+ + GY R + AD+++L TC IREKA + +++ L Sbjct: 68 RKVYFETYGCQMNTNDTEIAWSILQKAGYSRTLELQKADVVLLVTCSIREKAEQTIWNRL 127 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + K K L + V GC+A+ E+L + +V+V+ GP Y LP LL A Sbjct: 128 KHLTASKKRIQKHKRSLTIGVLGCMAERLKSELLDQEKLVDVLAGPDAYRDLPRLLSLAH 187 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+R + S+E+ + + V + G +AF++I GCD C++C+VP+TRG E S Sbjct: 188 GGQRASNVLLSLEETYADVIPV---HQTLEGHSAFVSIMRGCDNMCSYCIVPFTRGRERS 244 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------------------ 246 R +S +V+E R L D GV EITLLGQNVN++R C+ Sbjct: 245 RPMSSIVEEVRMLSDQGVKEITLLGQNVNSYRDLSKLQFSCSERNTQLSRGFQSVYRTKQ 304 Query: 247 ----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 F+DLL +S I +R+R+T+ HP+D D +++ + + +LHLP QSGS RI Sbjct: 305 GGLRFADLLDRVSLINPNMRIRFTSPHPKDFPDEVLQLIQERSNICKHLHLPAQSGSSRI 364 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L +M R +T Y ++++ IR + P +++SSDFI GF ET++D + T+ L+ ++GY Sbjct: 365 LHAMRRGYTREAYLELVENIRKIIPGVSLSSDFIAGFCSETEEDHQQTISLLKEVGYNIG 424 Query: 363 FSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-K 420 F F YS R T + LE V VK RL L RE+ N +G I VL+E K Sbjct: 425 FFFTYSMRKKTHAYHRLEDNVPAPVKKRRLEELISVFREKATKVNMTLIGNIQLVLVEGK 484 Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNI------------GDIIKVRITDVKISTLYGE 466 + +L GR+ V+ N + GD + V+IT +L G Sbjct: 485 SKRSSEELCGRNDGNVKVIFPKTNLPVQPEKTQMACITPGDYVLVKITSANSQSLRGH 542 >gi|160333602|ref|NP_001103849.1| CDK5 regulatory subunit-associated protein 1 [Danio rerio] gi|159155698|gb|AAI54732.1| Zgc:162738 protein [Danio rerio] Length = 577 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 248/478 (51%), Gaps = 39/478 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + ++YGCQMN D+ + GY R + AD+++L TC IREKA + +++ L Sbjct: 90 RKVYFETYGCQMNTNDTEIAWSILQKAGYSRTLELQKADVVLLVTCSIREKAEQTIWNRL 149 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + K K L + V GC+A+ E+L + +V+V+ GP Y LP LL A Sbjct: 150 KHLTASKKRIQKHKRSLTIGVLGCMAERLKSELLDQEKLVDVLAGPDAYRDLPRLLSLAH 209 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+R + S+E+ + + V + G +AF++I GCD C++C+VP+TRG E S Sbjct: 210 GGQRASNVLLSLEETYADVIPV---HQTLEGHSAFVSIMRGCDNMCSYCIVPFTRGRERS 266 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------------------ 246 R +S +V+E R L D GV EITLLGQNVN++R C+ Sbjct: 267 RPMSSIVEEVRMLSDQGVKEITLLGQNVNSYRDLSKMQFSCSERNTQLSRGFQSVYRTKQ 326 Query: 247 ----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 F+DLL +S I +R+R+T+ HP+D D +++ + + +LHLPVQSGS RI Sbjct: 327 GGLRFADLLDRVSLINPNMRIRFTSPHPKDFPDEVLQLIQERSNICKHLHLPVQSGSSRI 386 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L +M R +T Y ++++ IR + P +++SSDFI GF ET++D + T+ L+ ++GY Sbjct: 387 LHAMRRGYTREAYLELVENIRKIIPGVSLSSDFIAGFCSETEEDHQQTISLLKEVGYNIG 446 Query: 363 FSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-K 420 F F YS R T + LE V VK RL L RE+ N +G VL+E K Sbjct: 447 FFFTYSMRKKTHAYHRLEDNVPAPVKKRRLEELISVFREKATKVNMTLIGNTQLVLVEGK 506 Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNI------------GDIIKVRITDVKISTLYGE 466 + +L GR+ V+ N + GD + V+IT +L G Sbjct: 507 SKRSSEELCGRNDGNVKVIFPKTNLPVQPEKTQMACITPGDYVLVKITSANSQSLRGH 564 >gi|238916920|ref|YP_002930437.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750] gi|238872280|gb|ACR71990.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750] Length = 473 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 156/444 (35%), Positives = 244/444 (54%), Gaps = 15/444 (3%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GCQMN DS ++ + GY D +D ++ NTC +RE A KVY LG ++ Sbjct: 39 VHTFGCQMNARDSEKLLGVLKEIGYLETEDEDKSDFVIYNTCTVRENANLKVYGRLGHLK 98 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERARF 145 N+K ++ +L+ + GC+ Q E+I V++V G Y + +L+ R Sbjct: 99 NVK----RKNPHMLIAMCGCMMQEPDVVEKIRDSYKFVDIVFGTFNIYAMAKLIYNRITS 154 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G +V+D +D E L RK + + I GC+ FCT+C+VPY RG EISR Sbjct: 155 GSQVIDIWEKTKDIVEELPT-----ERKFPFKSGVNIMYGCNNFCTYCIVPYVRGREISR 209 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ E +L+ +GV E+ LLGQNV+++ GK LD +F+ LL + +I+GL R+R+ Sbjct: 210 EPKDIIMEIERLVKDGVKEVMLLGQNVDSY-GKTLDN-PVSFAQLLREIDKIEGLERIRF 267 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 T HP+D+ + ++ D + ++H P+QSGS R+LK MNR++T Y + ++ IR + Sbjct: 268 MTPHPKDIEEETLEVIRDSKKICNHIHFPLQSGSSRLLKLMNRKYTKEHYLEQVEMIRRI 327 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD++I++D IVGFPGET++DF T+D+V K + A++F YS R GTP + M QV E+ Sbjct: 328 LPDVSITTDIIVGFPGETEEDFEDTIDVVKKAKFDSAYTFIYSKRTGTPAARMENQVPED 387 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKN 444 V +R L + E G ++VL+E K E+G + GR V Sbjct: 388 VVKDRFNRLLATVNEVSHEHIRRYEGMDMKVLVEGKDDHEEGFVTGRMTNNILVHFAGDE 447 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG I+ V + + K G L+ Sbjct: 448 SLIGQIVTVHLDECKGFYYMGRLI 471 >gi|325283155|ref|YP_004255696.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Deinococcus proteolyticus MRP] gi|324314964|gb|ADY26079.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Deinococcus proteolyticus MRP] Length = 459 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 164/453 (36%), Positives = 246/453 (54%), Gaps = 32/453 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + V +YGCQMN YD+ ++ S G + V +D AD ++LNTC +R K +KV S LG Sbjct: 2 KAHVVTYGCQMNEYDTHLVQSQLVSLGADMVEDIDSADFVLLNTCAVRGKPVDKVRSVLG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +R K R L+V + GC+AQ EG++I R+ V+V++GP + + + LE Sbjct: 62 ELRKEKAKR-----PLVVGMMGCLAQLEEGQQIARKFE-VDVLIGPGSLLDIGKALES-- 113 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNR-----KRGVTAFLTIQEGCDKFCTFCVVPYTR 199 ++F L+ D + + + A LTI GCD CT+C+VP TR Sbjct: 114 ------------NERFWALNFRDELHGHIPPAPQGKLQAHLTIMRGCDHHCTYCIVPTTR 161 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSE 256 G ++SRS ++ E + GV E+TLLGQNVNA+ +G L G +F+DLL + Sbjct: 162 GPQVSRSPDDILRELDMQLAAGVREVTLLGQNVNAYGVDQGARLAGYP-SFADLLRMVG- 219 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 G+ R+++TTSHP + ++ + +A + + ++HLPVQSGSDR+L+ M R + +Y Sbjct: 220 ASGIERIKFTTSHPMNFTEDVAQAMAETPAVCEFIHLPVQSGSDRVLRRMAREYNREKYL 279 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 I++IR PD + +D IVGFPGET++DF+ T+DL D++GY A+ F YS R GTP Sbjct: 280 THIEQIRRHMPDAVLYTDIIVGFPGETEEDFQQTLDLYDEVGYDSAYMFIYSARPGTPSY 339 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 + VK ERL L K ++ A VG + EVL+ G L G + Sbjct: 340 KHFTDLPREVKTERLQRLIAKQKDWSARRFAAKVGTVQEVLVRGDAYSPGFLEGHTRGQH 399 Query: 437 -SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +VV + I +VRI LYG++V Sbjct: 400 PTVVPKAVGAEGAGIYQVRINHATPHMLYGQVV 432 >gi|296199816|ref|XP_002806791.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated protein 1-like [Callithrix jacchus] Length = 538 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 161/488 (32%), Positives = 265/488 (54%), Gaps = 39/488 (7%) Query: 17 IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 ++D+ + QR ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREK Sbjct: 42 MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 101 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A + +++ L +++ LK R++ L + + GC+A+ EEIL R +V+V+ GP Y Sbjct: 102 AEQTIWNRLHQLKALKTRRLRSRVPLRIGILGCMAERLKEEILNREKMVDVLAGPDAYRD 161 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 LP LL A G++ + S+++ + + V + +AF++I GCD CT+C+V Sbjct: 162 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSPS---ATSAFVSIMRGCDNMCTYCIV 218 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240 P+TRG E SR ++ +++E RKL + G+ E+TLLGQNVN++R +G Sbjct: 219 PFTRGRERSRPVASILEEVRKLSEQGLKEVTLLGQNVNSFRDSSEVQFNSAVSTNLSRGF 278 Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 T F+ LL +S + +R+R+T+ HP+D D +++ + D + +HLP Sbjct: 279 TANCKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 338 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 QSGS R+L++M R ++ Y ++ IR P +++SSDFI GF GET++D T+ L+ Sbjct: 339 AQSGSSRVLEAMRRGYSREAYVALVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 398 Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413 ++ Y F F YS R T + L + V E VK RL L RE+ N VG Sbjct: 399 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANQTAVGCT 458 Query: 414 IEVLIEKHGKEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKI 460 VL+E K L GR+ L+ + +++ ++ GD + V+IT Sbjct: 459 QLVLVEGLSKRSAADLCGRNDGNLKVIFPDAEMEDVSNPGLRVRAQPGDYVLVQITSAGS 518 Query: 461 STLYGELV 468 TL G ++ Sbjct: 519 QTLKGHVL 526 >gi|242309674|ref|ZP_04808829.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523675|gb|EEQ63541.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 438 Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 157/460 (34%), Positives = 250/460 (54%), Gaps = 36/460 (7%) Query: 23 VPQRFFVKSYGCQMNVYDS----LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78 + ++ F+++ GC MN DS +ED + Y + +ADLI++NTC +REK + Sbjct: 1 MSKKLFIETLGCAMNERDSEHIIAELED---KENYTLTQNPKEADLILINTCSVREKPEK 57 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 K++S +G+ +K K G + GC A GE IL+RS V+ V+G + ++ + Sbjct: 58 KLFSEIGQYAKIKKENAKIG------ICGCTASHLGENILKRSKAVDFVLGARNVSKISQ 111 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGY----NRKRGVTAFLTIQEGCDKFCTFCV 194 +L + R VD DY D Y + + + I GCDK CT+C+ Sbjct: 112 ILHQGRVA--WVDIDYD-----------DSTYVFSNKQNSSLKGMINISIGCDKQCTYCI 158 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYS 253 VP+TRG EIS ++DEA+KL D G EI LLGQNVN + R K F+ LL Sbjct: 159 VPHTRGNEISIPTHLILDEAKKLADKGTKEILLLGQNVNNYGRRFSSPHRKINFTQLLRE 218 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 +SEI G+ R+R+T+ HP M D I+ + +H+P+QSGS +IL+ M R ++ Sbjct: 219 ISEIDGIQRIRFTSPHPLHMDDEFIEEVAKNPKICKAIHMPLQSGSTKILQKMKRGYSKE 278 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + ++++RS+ P ++IS+D IVGFP E+++DF T+D+++K+ + +SF YS R T Sbjct: 279 WFLNRVEKMRSLIPHLSISTDIIVGFPTESEEDFLETLDVLEKVRFDTMYSFIYSTRPHT 338 Query: 374 PGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 + LE VDE + RL L+ + +E N +G+I VL E + + L Sbjct: 339 QAATWLENNEISLVDEEIAKNRLAILKDRHKEILTQDNAKQIGKIHSVLFESYDAQNMLL 398 Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 GRS + + + + + IG+I +RI++ K + L GEL+ Sbjct: 399 EGRSDTNKLIRVKAGRNLIGEIHSIRISETKGAQLIGELL 438 >gi|115497176|ref|NP_001069114.1| CDK5 regulatory subunit-associated protein 1 [Bos taurus] gi|115304933|gb|AAI23653.1| CDK5 regulatory subunit associated protein 1 [Bos taurus] gi|296481106|gb|DAA23221.1| CDK5 regulatory subunit associated protein 1 [Bos taurus] Length = 589 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 157/479 (32%), Positives = 258/479 (53%), Gaps = 38/479 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREKA + +++ L Sbjct: 102 RRVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 161 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++++LK+ R++ L + + GC+A+ EEIL R +V+++ GP Y LP+LL A Sbjct: 162 HQLKSLKSKRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPQLLAVAE 221 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ + S+++ + + V + +AF++I GCD C++C+VP+TRG E S Sbjct: 222 SGQQAANVLLSLDETYADVMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 278 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDGE------ 243 R ++ +++E RKL + G+ E+TLLGQNVN++R +G Sbjct: 279 RPVASILEEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAVSTNLSRGFSTNYKAKQG 338 Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 F+ LL +S I +R+R+T+ HP+D D +++ + D + +HLP QSGS R+L Sbjct: 339 GLRFAHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERDNICKQIHLPAQSGSSRVL 398 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 ++M R ++ Y ++I IR P +++SSDFI GF GET++D T+ L+ ++ Y F Sbjct: 399 EAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLREVQYNIGF 458 Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 F YS R T + L + + E VK RL L RE+ N + VG VL+E Sbjct: 459 LFAYSMRQKTRAYHRLKDDIPEEVKLRRLEELITVFREEATKANKSFVGCTQLVLVEGPS 518 Query: 423 KEKGK-LVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYGELV 468 K L GR+ V+ GD + V+IT TL G ++ Sbjct: 519 KRSAADLCGRNDGNLKVIFADAEMEDATDSRLRVRAQPGDYVLVKITSASSQTLKGHVL 577 >gi|157164991|ref|YP_001467015.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter concisus 13826] gi|229890496|sp|A7ZE07|MIAB_CAMC1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|112800061|gb|EAT97405.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter concisus 13826] Length = 433 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 157/448 (35%), Positives = 247/448 (55%), Gaps = 20/448 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS + ++ + Y ++++ADLI++NTC +REK K++S Sbjct: 3 KKLFIQTLGCAMNVRDSEHIIAELSQKEDYSLTQNIEEADLILINTCSVREKPVHKLFSE 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G K K G V GC A G EI +R+P V+ V+G + ++ + + Sbjct: 63 VGAFEKAKKRGAKIG------VCGCTASHLGSEIFKRAPYVDFVLGARNVSKITKAVNTP 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +F ++ D S E F G R + + I GCDK CT+C+VP+TRG EI Sbjct: 117 KFISTDINHDES-EYAF--------GEFRGSPYKSHINISIGCDKKCTYCIVPHTRGDEI 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLV 261 S S ++ E K +G EI LLGQNVN + GK G E FSDLL +SEI+G+ Sbjct: 168 SIPSSLILKEVEKAAKSGAKEIFLLGQNVNNY-GKRFSGVQENIDFSDLLVKISEIEGVE 226 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP M D ++ + + +H+P+QSG+ ++L+ M R +T + R Sbjct: 227 RIRFTSPHPLHMDDKFLEIFTNNPKICKSMHMPLQSGNTKVLREMKRGYTKEWFLDRALR 286 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R + PD++IS+D IV FPGE+D++F TMD+++++ + Q FSFKYSPR T + + Q Sbjct: 287 LRKMCPDVSISTDIIVAFPGESDNEFEDTMDVLEQVRFEQIFSFKYSPRPLTKAATFINQ 346 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 +D+ +ERL LQ + E A +I +V E+ + G + GRS V ++ Sbjct: 347 IDDKTASERLTRLQNRHSEILDEIVAAQKDKIFDVYFEEL-RANGGVAGRSFNNFLVQVD 405 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469 +G K +IT+ K LYGEL + Sbjct: 406 GSEELLGTTQKAKITNPKRMVLYGELQI 433 >gi|124002076|ref|ZP_01686930.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Microscilla marina ATCC 23134] gi|123992542|gb|EAY31887.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Microscilla marina ATCC 23134] Length = 493 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 159/467 (34%), Positives = 265/467 (56%), Gaps = 30/467 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + G++ + +D+AD+++LNTC IR+ A ++V + Sbjct: 34 RKLYIESYGCQMNFSDSEIVASIMSEHGFDTTSEVDNADVVLLNTCAIRDNAEQRVRN-- 91 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R+RNL + + K+ G ++V V GC+A+ + +L +V++V GP +Y LP+L+ +A Sbjct: 92 -RLRNLNHIKNKKPG-MVVGVLGCMAERLKKRLLEEEQMVDIVAGPDSYRDLPQLVLQAD 149 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V+ S ++ + ++ V N GVTAF++I GCD C+FCVVP+TRG E S Sbjct: 150 EGQEAVNVFLSRDETYADIAPVRLNSN---GVTAFISIMRGCDNMCSFCVVPFTRGRERS 206 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGK----GLDGEK-------------- 244 R VV EA+ L D G E+TLLGQNV++ W L GEK Sbjct: 207 RDPYSVVKEAQDLFDKGYREVTLLGQNVDSYLWSSNPDVISLLGEKKAVKKGADLTGVDI 266 Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 F+ LL ++ + +R+R++TSHP+D+++ ++ + + Y+HLPVQSG+ R+L Sbjct: 267 VDFAGLLEKVALVSPDLRIRFSTSHPKDITEDVLHTMAKYENICKYIHLPVQSGNSRVLD 326 Query: 305 SMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 +MNR +T Y +I+ IR + + ISSD I GF ETD++ + T+ L+ ++ Y ++ Sbjct: 327 AMNRGYTRERYLEIVASIRRILGEECGISSDMIAGFCTETDEEHQDTLTLMKEVKYDFSY 386 Query: 364 SFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 F YS R T + +E V VK +RL + +E + N +G++ +VL+E Sbjct: 387 MFYYSERPNTTAAKKMEDDVPLEVKKKRLQEIIALQQELSLKRNQQDIGKVHKVLVEGFS 446 Query: 423 KEKGK-LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 K L GR+ + V+ K++ GD + V + + +TL G+ V Sbjct: 447 KRSDDYLKGRNTANKMVIFPKKHYKKGDYVNVMVKECSAATLIGDPV 493 >gi|237752702|ref|ZP_04583182.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC BAA-430] gi|229376191|gb|EEO26282.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC BAA-430] Length = 438 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 153/458 (33%), Positives = 254/458 (55%), Gaps = 32/458 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + ++ ++++ GC MN DS + ++ + Y+ + +ADLI++NTC +REK +K++ Sbjct: 1 MAKKLYIETLGCAMNERDSAHIIAELEEKESYQLTENPQEADLILINTCSVREKPEKKLF 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S +G+ +K GD + + GC A G++IL+RS V+ V+G + ++ +++ Sbjct: 61 SEIGQYAKIKK------GDAKIGICGCTASHLGDKILKRSKAVDFVLGARNVSKISQIIH 114 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGY----NRKRGVTAFLTIQEGCDKFCTFCVVPY 197 + R VD DY D Y N+ + + I GCDK CT+C+VP+ Sbjct: 115 QNRVA--WVDIDYD-----------DSTYVFSQNQHSALKGMINISIGCDKKCTYCIVPH 161 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLS 255 TRG EIS ++ EAR+L ++G EI LLGQNVN + G+ G F+ LL +S Sbjct: 162 TRGNEISIPSDLILQEARRLAESGTKEILLLGQNVNNY-GRRFSGAHRAINFTQLLNEIS 220 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 +I GL R+R+T+ HP M D I + +H+P+QSGS IL+ M R ++ + Sbjct: 221 QINGLERIRFTSPHPLHMDDEFILEFAQNPKICKAIHMPLQSGSSEILRKMKRGYSKEWF 280 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 ++++R + P+++I +D IVGFP E++DDF T+D+++K+ + +SF YS R T Sbjct: 281 LNRVEKMRHLIPELSIGTDIIVGFPTESEDDFLETLDVLEKVRFDTLYSFIYSSRPHTEA 340 Query: 376 SNMLEQ-----VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 + LE +DE + ERL+ L+ + +E N VG+I +VL+E + + L G Sbjct: 341 HHWLEMEQVHLIDEEIAKERLMRLKDRHKEILTQDNAKQVGRIHKVLVESYDAQNLWLEG 400 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 RS + V + + +G + VRIT+VK + L GEL Sbjct: 401 RSDTNKLVRIKAGRDLVGSLCNVRITEVKGAQLIGELA 438 >gi|163847968|ref|YP_001636012.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chloroflexus aurantiacus J-10-fl] gi|222525848|ref|YP_002570319.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chloroflexus sp. Y-400-fl] gi|229890474|sp|A9WHB1|MIAB_CHLAA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|163669257|gb|ABY35623.1| RNA modification enzyme, MiaB family [Chloroflexus aurantiacus J-10-fl] gi|222449727|gb|ACM53993.1| RNA modification enzyme, MiaB family [Chloroflexus sp. Y-400-fl] Length = 466 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 165/456 (36%), Positives = 250/456 (54%), Gaps = 35/456 (7%) Query: 19 DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78 DQ +R++V + GCQMN+ DS R+E GY +DA IVLN+C +R A E Sbjct: 16 DQTPRERRYYVWTVGCQMNISDSERLEAALQGVGYSPATRPEDASFIVLNSCSVRASAEE 75 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR-RSPIVNVVVGPQTYYRLP 137 ++ LG + +K ++ D +V+ GC+ I + P+V+ V P + Sbjct: 76 RILGKLGELVRVK----RQHPDTRIVLWGCMVGPNNRSIFADQLPMVDHFVSPSAVDEVV 131 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 L + Y++++ L + D + V+ + IQ GC+ C++CV+P Sbjct: 132 AL---------APNPIYTLDEPA--LPVRDWSHP---PVSVHVPIQYGCNMTCSYCVIPL 177 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG E SR L+++V+E R+++ G EITLLGQ V++W G L G + +DLL ++ Sbjct: 178 RRGRERSRPLAEIVEEVRRIVARGAKEITLLGQIVDSW-GHDLPG-RPELADLLEAVDPT 235 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 GL+RLR+ TSHP M+D LI+ L P ++LPVQ+GSDR+LK M R +T Y+ Sbjct: 236 PGLLRLRFLTSHPAWMTDRLIETVARLPRCQPEINLPVQAGSDRVLKLMRRGYTVARYKT 295 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +I RIR+ PDI++++D IVG PGET+DDFR TMDL +IG+ + +S R PG+ Sbjct: 296 LIARIRAAIPDISLTTDIIVGHPGETEDDFRQTMDLCAEIGFDKVHIAAFSAR---PGTR 352 Query: 378 MLEQ-------VDENVKAERLLCLQKKLREQQVSFNDA-CVGQIIEVLIEKHGKEKGKLV 429 EQ V VK ER L+ +L+EQ + A +GQ +EVL+E G+ KGK Sbjct: 353 AAEQEQDPALAVPPAVKEERRRRLE-QLQEQIATERMARFLGQTVEVLVE--GESKGKWR 409 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 GR+P + V + G ++ V+IT +L G Sbjct: 410 GRTPGNRLVFFSHPADLTGQLVPVKITATSPWSLQG 445 >gi|15639741|ref|NP_219191.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Treponema pallidum subsp. pallidum str. Nichols] gi|189025979|ref|YP_001933751.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Treponema pallidum subsp. pallidum SS14] gi|6136574|sp|O83735|MIAB_TREPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|229891019|sp|B2S3Z3|MIAB_TREPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|3323060|gb|AAC65721.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018554|gb|ACD71172.1| hypothetical protein TPASS_0754 [Treponema pallidum subsp. pallidum SS14] gi|291060116|gb|ADD72851.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Treponema pallidum subsp. pallidum str. Chicago] Length = 456 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 153/470 (32%), Positives = 256/470 (54%), Gaps = 49/470 (10%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +F ++YGCQMNV +S +E + ++G+ + D++++NTC +R A +V+ LG Sbjct: 3 YFFETYGCQMNVAESASVEQLLLARGWTKAVDAQTCDVLIINTCSVRITAETRVFGRLGL 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +LK R +++ GC+AQ ++I ++ P ++ VVG + R + + Sbjct: 63 FSSLKKKRA-----FFIILMGCMAQRLHDKIQQQFPRIDYVVGTFAHARFESIFQEIE-- 115 Query: 147 KRVVDTDYSVEDKFERL-------------SIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193 +++ DY E ER S +G + +F+ I GC+ FC+FC Sbjct: 116 QKLTQKDYRFEFISERYREHPVSGYRFFASSYSEGSFQ------SFIPIMNGCNNFCSFC 169 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 +VPY RG EISR L ++ E L + GV EITLLGQNVN++RG+ +G TF LL Sbjct: 170 IVPYVRGREISRDLDAILQEVDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRH 229 Query: 254 L---SEIKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 L E+K ++ +R+ +SHP+D+SD LI L +HLPVQ G++ +LK M R Sbjct: 230 LVRRCEVKDQIKWIRFVSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGANGVLKRMRRS 289 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 +T +Y ++ ++++ P++A+S+D ++GFPGET++DF T+DL+ ++ + AF + Y+P Sbjct: 290 YTREQYLSLVGKLKASVPNVALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNP 349 Query: 370 RLGTPGSNMLEQVDENVKAERL---LCLQ-----KKLREQQVSFNDACVGQIIEVLIEKH 421 R GTP + +++ + + RL + LQ KK+R A VG+ + VL+E Sbjct: 350 REGTPAYDFPDRIPDATRIARLQRVIALQMSTTLKKMR--------ARVGKTLPVLVESR 401 Query: 422 GKEKG-KLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELV 468 + +L G + + VL K IG + V++ +V+ TL LV Sbjct: 402 SRNNPEELFGHTELGEMTVLEGKVDPTYIGRFVDVQVKEVRGRTLRAHLV 451 >gi|224436855|ref|ZP_03657844.1| hypothetical protein HcinC1_02771 [Helicobacter cinaedi CCUG 18818] Length = 452 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 158/451 (35%), Positives = 254/451 (56%), Gaps = 25/451 (5%) Query: 26 RFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F+++ GC MN DS + ++ + Y ++ +ADLI++NTC +REK +K++S + Sbjct: 2 KLFIQTLGCAMNERDSAHIIAELKEKKQYTLTDNAKEADLILINTCSVREKPEKKLFSEI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G+ K S K G + GC A GEEI++++P V+ V+G + ++ ++L+R + Sbjct: 62 GQFAKEKKSGAKIG------ICGCTASHLGEEIIKKAPSVDFVLGARNVSKITQVLDRPK 115 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V+ D +D S ++ G+ A L I GCDK C++C+VP+TRG EIS Sbjct: 116 ----AVEVDIDYDD-----STYVFASSQDMGIKAHLNISIGCDKKCSYCIVPFTRGKEIS 166 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRL 263 + +V+EA+KL+ NG E+ LLGQNVN + + +K F++LL +LSEI+GL R+ Sbjct: 167 IPIDLLVNEAKKLVANGAKELLLLGQNVNHYGVRFSTPHKKTNFTELLATLSEIEGLYRI 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP M D ++ + +H+P+QSGS +ILK M R + Y I +++ Sbjct: 227 RFTSPHPLHMDDEFLEEFARNPKIAKGIHIPLQSGSSQILKMMRRGYDKQWYLDRIAKLK 286 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG----SNML 379 S+ P++ I +D IVGFP E++ DF TM+++ + + +SF YSPR T +ML Sbjct: 287 SLLPNVGIGTDIIVGFPTESEQDFEDTMEVLSIVEFDTLYSFVYSPRPHTSAYSYDKSML 346 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWLQS 437 V + V ERL LQ ++ +G I EVLIE H ++G+ GRS + Sbjct: 347 --VPQEVAKERLSRLQNLHKQILQKKAQKEIGSIYEVLIENHRDDEGQTWSEGRSSQNKL 404 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + + IG II+V++T LYGE V Sbjct: 405 IKILGRKCPIGSIIQVKVTHNDGGGLYGEFV 435 >gi|301167860|emb|CBW27445.1| putative radical SAM protein [Bacteriovorax marinus SJ] Length = 492 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 154/417 (36%), Positives = 250/417 (59%), Gaps = 24/417 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ ++K+YGCQMN +D+ R+ S + + ++DADL++ NTC +R+ A K YS Sbjct: 42 PRKVWMKTYGCQMNYHDTDRIMSHLKSLNFTQTEEVEDADLVLFNTCAVRDLANNKFYSH 101 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG NLK+ + + +L+V V GCVAQ EG+E++++ ++ GP T + +++ R Sbjct: 102 LG---NLKHQKAIKKDNLVVGVGGCVAQTEGKELIKKYRHLDFAFGPDTIDSINDMVYRT 158 Query: 144 RFGKRVVDTDYSVE--DKFERLSI---VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 G D+ + + D+ E SI + G + AF+ I +GC+K+CT+C+VPYT Sbjct: 159 YAG----DSKFFINSWDRSENFSIETKISHGTPQ-----AFVNIIKGCNKYCTYCIVPYT 209 Query: 199 RGIEISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG E SR +++VV++ R+L+ G+ E+TLLGQNVN++ GK +GE + + L+ L + Sbjct: 210 RGKERSRKVAEVVEDIRRLVKYQGIQEVTLLGQNVNSY-GKE-NGE--SLAQLILELENL 265 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +GL +RYTTSHP D+SD LI HG L +LHLP+QSGS+ +LK MNR +T Y Sbjct: 266 EGLEIIRYTTSHPYDISDELIMTHGVSKKLSKHLHLPIQSGSNTVLKRMNREYTVEHYLD 325 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++++R V+P+I IS+D I GF ET+++ AT+ L+D + +S+ YS R T + Sbjct: 326 RVNKLREVQPEIIISTDIIAGFVNETNEEHEATLKLLDDARFDFIYSYAYSKRNKTRAAR 385 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRS 432 M + + ++++ RL +Q + Q G+ +L+E KG K GR+ Sbjct: 386 MEDHLTDDIRGARLREIQAHQLKLQAEIRKEMEGKSFRILVEGKNTFKGETKWKGRT 442 >gi|34558083|ref|NP_907898.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Wolinella succinogenes DSM 1740] gi|81653788|sp|Q7MR25|MIAB_WOLSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|34483801|emb|CAE10798.1| conserved hypothetical protein-2-methylthioadenine synthetase [Wolinella succinogenes] Length = 433 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 153/444 (34%), Positives = 243/444 (54%), Gaps = 17/444 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+++ GC MNV DS M ++ +GY + +ADLI++NTC +REK K++S Sbjct: 3 KKLFIQTLGCAMNVRDSEHMIAELEAKEGYTLTDDPKEADLILINTCSVREKPERKLFSE 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G+ K K G V GC A G EIL+++P V+ V+G + ++ ++ + Sbjct: 63 IGQFSKEKKEEAKIG------VCGCTASHLGSEILKKAPSVSFVLGARNVSKISRVIHQE 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + D D S G N + A + I GCDK C +C+VP+TRG EI Sbjct: 117 KAVEVATDYDDS------SYVFATGSRNDYK---AMVNISIGCDKKCAYCIVPHTRGQEI 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S ++ EAR+L GV EI LLGQNVN + R K +F++LL LS+++G+ R Sbjct: 168 SVPSDLILGEARRLASAGVKEILLLGQNVNHYGRRFSSAHPKISFTELLRELSQVEGIER 227 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+T+ HP M D ++ + +H+P+QSGS RIL M R ++ + ++R+ Sbjct: 228 LRFTSPHPLHMDDEFLEEFASNPKICKSIHMPLQSGSTRILSLMRRGYSQEWFINRVERL 287 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 +++ P+ I +D IVGFPGE+++DF TM++++++ + +SF YSPR T ++ V Sbjct: 288 KALAPETTIGTDIIVGFPGESEEDFLGTMEVLERVRFETLYSFVYSPRPHTEAASWENLV 347 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 DE V +ERL LQ + +E N VG I VL E +++G GR+ + V + Sbjct: 348 DEEVASERLHRLQARHKEILEELNQKEVGAIHSVLWEHQRRDEGWCEGRTDTGKMVRMKG 407 Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466 +G I VRI + + L GE Sbjct: 408 GEEFLGRITPVRIKEAYRAFLIGE 431 >gi|154175326|ref|YP_001408583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Campylobacter curvus 525.92] gi|153793216|gb|EAU01325.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter curvus 525.92] Length = 420 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 157/436 (36%), Positives = 240/436 (55%), Gaps = 20/436 (4%) Query: 36 MNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MNV DS + ++ + Y ++++ADLI++NTC +REK K++S +G K + Sbjct: 1 MNVRDSEHIIAELSQKEDYTLTQNLEEADLILINTCSVREKPVHKLFSEVGAFEKAKKNG 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154 K G V GC A G+EI +R+P V+ V+G + ++ ++ +F ++ D Sbjct: 61 AKIG------VCGCTASHLGDEIFKRAPYVDFVLGARNVSKISTAVKTPKFISTDINHDE 114 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 S E F G R + + I GCDK CT+C+VP+TRG EIS + ++ E Sbjct: 115 S-EYAF--------GEFRGSPYKSHINISIGCDKKCTYCIVPHTRGDEISIPANLILREV 165 Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 K NG EI LLGQNVN + GK G EK FSDLL +SE+ G+ R+R+T+ HP Sbjct: 166 EKAATNGAKEIFLLGQNVNNY-GKRFSGAHEKIDFSDLLVRISEVAGVERIRFTSPHPLH 224 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 M D ++ + +H+P+QSG+ ++L+ M R +T + ++R + PD++IS Sbjct: 225 MDDKFLEIFSQNPKICKSMHMPLQSGNTKVLREMKRGYTKEWFLDRAAKLREMCPDVSIS 284 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 +D IV FPGE+D +F TMD+++++ + Q FSFKYSPR T + Q+DE + RL Sbjct: 285 TDIIVAFPGESDAEFEDTMDVLERVKFEQIFSFKYSPRPMTKAAEFTNQIDEATASARLT 344 Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ + E A G+I++V E+ + G + GRS V +N +G +K Sbjct: 345 RLQSRHNEILDEIVAAQEGKILDVYFEEL-RANGGVAGRSFNNFLVQVNGSEELLGRTLK 403 Query: 453 VRITDVKISTLYGELV 468 V+ITD K LYGEL Sbjct: 404 VKITDTKRMVLYGELA 419 >gi|152991225|ref|YP_001356947.1| tRNA-i(6)A37 thiotransferase enzyme [Nitratiruptor sp. SB155-2] gi|229890577|sp|A6Q531|MIAB_NITSB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|151423086|dbj|BAF70590.1| tRNA-i(6)A37 thiotransferase enzyme [Nitratiruptor sp. SB155-2] Length = 433 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 158/446 (35%), Positives = 248/446 (55%), Gaps = 18/446 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 +R ++++ GC MNV DS + ++ + YE ++ +ADLI++NTC +REK K++S Sbjct: 3 KRLYIETLGCAMNVRDSEHIIAELTQKEDYELTQNLQEADLILINTCSVREKPVHKLFSE 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N + KEG + V GC A GEEI++++P V+ V+G + ++ +++++ Sbjct: 63 IGYF----NKKKKEGAK--IGVCGCTASHLGEEIIKKAPYVSFVLGARNVSKIRDVIKQE 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + VD DY E + Y AF+ I GCDK CTFC+VP TRG EI Sbjct: 117 KAVE--VDIDYD-ESTYAFSDFRTSPYK------AFINISIGCDKKCTFCIVPNTRGEEI 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S ++ E R+ +D G EI LLGQNVN + R K F+DLL +SEI G+ R Sbjct: 168 SIPPELILQEVRRAVDTGAKEIFLLGQNVNNYGRSFSDKARKVDFTDLLRMVSEIDGVRR 227 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP M D ++ + +H+P+QSGS ++L+ M R +T + ++ Sbjct: 228 IRFTSPHPLHMDDKFLQEFATNPKICKSMHMPLQSGSTKVLRDMKRGYTKEWFLDRAMKL 287 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + P++ IS+D IVGFPGE+++DF T+D+V K+ + Q FSFKYSPR TP + Q+ Sbjct: 288 REMVPEVHISTDIIVGFPGESEEDFADTIDVVQKVRFEQIFSFKYSPRPLTPAKDYENQI 347 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 + V + RL LQ + S ++ ++ EV E+ K G + GR+ V + Sbjct: 348 PDEVASRRLSYLQDLHLQMLDSISEQEKDKVYEVYFEEL-KPGGYVAGRTDNNWIVKVKG 406 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 +G+ VRIT +L GELV Sbjct: 407 SEELLGEFKSVRITKPGRLSLEGELV 432 >gi|57168594|ref|ZP_00367727.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter coli RM2228] gi|57020099|gb|EAL56776.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Campylobacter coli RM2228] Length = 419 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 161/436 (36%), Positives = 238/436 (54%), Gaps = 20/436 (4%) Query: 36 MNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MNV DS M ++ Y + +ADLI++NTC +REK K++S +G +K S Sbjct: 1 MNVRDSEHMIAELTQKDNYTLTEDIKEADLILINTCSVREKPVHKLFSEVGGFEKVKKSG 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154 K G V GC A G EI RR+P V+ V+G + ++ + + +F VD DY Sbjct: 61 AKIG------VCGCTASHLGSEIFRRAPYVDFVLGARNISKITQAVNTPKFMS--VDIDY 112 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 E +F G R +++ I GCDK CT+C+VP+TRG EIS L+ + EA Sbjct: 113 D-ESEFA------FGDFRNSIYKSYINISIGCDKHCTYCIVPHTRGDEISIPLNIIYKEA 165 Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 +K +D G EI LLGQNVN + GK E K FSDLL LS I+GL R+R+T+ HP Sbjct: 166 QKAVDKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEGLERIRFTSPHPLH 224 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 M D ++ + +H+P+QSGS +ILK+M R +T Y ++R + P+++IS Sbjct: 225 MDDKFLEVFAKNPKVCKSMHMPLQSGSSQILKAMKRGYTKEWYLDRALKLRELCPNVSIS 284 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 +D IV FPGE+D DF TM++++K+ + Q FSFKYS R T + M Q+DE + + RL Sbjct: 285 TDIIVAFPGESDKDFEETMEVLEKVRFEQMFSFKYSKRPLTKAATMPNQIDEEIASNRLS 344 Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ + E + +VL E+ + + GR+ V + +G + Sbjct: 345 TLQARHNEILDDIVKKQENKTFKVLFEEL-RAGNAIAGRTDNNFLVQVEGSEELLGTFKE 403 Query: 453 VRITDVKISTLYGELV 468 V+IT+ K LYGE++ Sbjct: 404 VKITNAKRMVLYGEII 419 >gi|194334797|ref|YP_002016657.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Prosthecochloris aestuarii DSM 271] gi|229890596|sp|B4S564|MIAB_PROA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|194312615|gb|ACF47010.1| RNA modification enzyme, MiaB family [Prosthecochloris aestuarii DSM 271] Length = 441 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 160/449 (35%), Positives = 255/449 (56%), Gaps = 22/449 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ ++++GCQMN D+ + + ++GY V DDADL++LNTC +RE A EK+ Sbjct: 1 MTKKVSIRTFGCQMNQADTEIISSLLTAEGYCLVAEEDDADLVMLNTCAVRENAVEKIMH 60 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L ++ L+ R ++ GCV Q EE+ ++S +++ + GP +Y +LP L+ Sbjct: 61 HLDSLKGLRRRRRGLVVGVI----GCVPQYYREEMFQKSGVIDFIAGPDSYRKLPGLIRN 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A G R + + + + + + G ++AF+ + GC+ C FCVVP+TRG E Sbjct: 117 AFQGIRGAELFLTQSETYGDIEPMRSG-----SISAFIPVMRGCNNMCAFCVVPFTRGRE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SRSL V+DE R+L G E+TLLGQNVN++R D F+ LL +S+ G +R Sbjct: 172 RSRSLQSVLDEVRRLEGQGYRELTLLGQNVNSYRD---DEAGADFALLLDEVSKAAGEMR 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+D+S+ L+ + + +HLPVQSGS R+L+ M+R HT EY I I Sbjct: 229 VRFTTSHPKDISEDLVNVVAQRENVCNAIHLPVQSGSSRMLEVMHRGHTRREYLDKIAMI 288 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RS P +A+S+D I GF GET++D T+ L++++ + A+ F YS R GT + L Sbjct: 289 RSAVPGVALSTDLIAGFCGETEEDHLQTLSLMEEVRFDYAYMFYYSVRPGTYAARHL--T 346 Query: 383 DENVKAERLLCLQKKLREQ-----QVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQ 436 D+ E+ LQ+ + Q ++ ND VG + EVL E + L+GRS + Sbjct: 347 DDVALEEKKRRLQEIIDLQSGISGEIFGND--VGSVQEVLAESESRRSSDMLMGRSDTNR 404 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYG 465 VV + +++ GD+++V I +TL G Sbjct: 405 VVVFDRQHYQPGDLVRVVIESSTQATLIG 433 >gi|153842125|ref|ZP_01993473.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus AQ3810] gi|149745410|gb|EDM56661.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Vibrio parahaemolyticus AQ3810] Length = 305 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 125/249 (50%), Positives = 170/249 (68%) Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 TAF++I EGC K+CT+CVVPYTRG E+SR + V+ E +L + GV E+ LLGQNVNA+ Sbjct: 1 ATAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAY 60 Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295 RG DGE C+F++LL ++ I G+ R+R+TTSHP + +D +I + D L+ +LHLPV Sbjct: 61 RGPMHDGEICSFAELLRLVASIDGIDRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPV 120 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355 QSGSDRIL M R HTA EY+ II ++R RPDI ISSDFIVGFPGETD DF+ TM L+ Sbjct: 121 QSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIK 180 Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415 + + +FSF +SPR GTP ++ + E VK ERL LQ+ + Q + ++ + Sbjct: 181 DVDFDMSFSFIFSPRPGTPAADYPCDIPEQVKKERLYELQQTINAQAMRYSRLMLATEQR 240 Query: 416 VLIEKHGKE 424 VL+E K+ Sbjct: 241 VLVEGPSKK 249 >gi|256371457|ref|YP_003109281.1| RNA modification enzyme, MiaB family [Acidimicrobium ferrooxidans DSM 10331] gi|256008041|gb|ACU53608.1| RNA modification enzyme, MiaB family [Acidimicrobium ferrooxidans DSM 10331] Length = 487 Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 162/491 (32%), Positives = 254/491 (51%), Gaps = 61/491 (12%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P + V+++GCQMN +DS R+ + G R + DA ++V NTC IR A E+ Sbjct: 1 MPSSYVVRTFGCQMNEHDSERIAGVLEGLGLTRGDDPADASVVVFNTCTIRANADER--- 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 F G++ L+ +R + + +VVAGC+AQ EG +L R+P V+V+VG RL ELL Sbjct: 58 FFGQVNQLREAR-RRNPSMRIVVAGCLAQGEGAGLLERAPHVDVIVGTHQVGRLAELLGA 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 A + VVD E + + + D G + A++TIQ GCD C FC+VP Sbjct: 117 ADGAEAVVDVR---EPEPGSVGLDDPTPWGEAVSEEPWRAWVTIQVGCDNRCAFCIVPRV 173 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN------------------------- 233 RG E SR +V E R+L GV E+TLLGQNVN Sbjct: 174 RGPEASRPFDAIVAEVRELAARGVSEVTLLGQNVNSYGRDLVLAMRRAEDERERAQVASR 233 Query: 234 ---AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290 A+ G+G+ + F+DL+ ++ + G+ R+R+T+ HP+DM +A + + Sbjct: 234 SGVAFLGQGVPRVRPLFADLVRAVGAVPGIRRVRFTSPHPKDMRTETFQAMAETPTVCES 293 Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350 LH P+QSGSDRIL +M+R ++A + + R+ D+A+S+D IVGFPGETD DF AT Sbjct: 294 LHFPLQSGSDRILAAMHRGYSADRFLAKLAEARATIDDLAVSTDIIVGFPGETDADFEAT 353 Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-VDENVKAERLLCLQKKLREQQVSFNDAC 409 +++ + + A++F YSPR GT + ++++ VD +V ER L + + + A Sbjct: 354 LEVAAEAAFDLAYTFIYSPRPGTEAAALVDRFVDPDVVHERFDRLVRVTERSAAAAHRAR 413 Query: 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI------------GDIIKVRITD 457 VG+ E+LIE ++ + + ++ H + G + RI D Sbjct: 414 VGRDEEILIEGPSRKDPR---------TATARTRQHKLVHIPGLDARALGGRYGRARIVD 464 Query: 458 VKISTLYGELV 468 + L GE++ Sbjct: 465 ARAHYLIGEII 475 >gi|307942734|ref|ZP_07658079.1| protein YleA [Roseibium sp. TrichSKD4] gi|307773530|gb|EFO32746.1| protein YleA [Roseibium sp. TrichSKD4] Length = 252 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 115/193 (59%), Positives = 159/193 (82%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FV++YGCQMNVYDS RM D+ +GYE ++++DADL++LNTCHIREKAAEKVYS L Sbjct: 46 RKVFVRTYGCQMNVYDSERMSDVLAREGYEPTDTVEDADLVLLNTCHIREKAAEKVYSEL 105 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GRIR +K+ R K G + ++ VAGCVAQAEG EI RR+P+V++VVGPQ+Y++LP+LL++A+ Sbjct: 106 GRIRKVKDERAKSGKETVIGVAGCVAQAEGAEISRRAPVVDLVVGPQSYHQLPDLLKKAK 165 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++VV+T++ ++ KF+ LS RKR +AFLT+QEGCDKFCTFCVVPYTRG E+S Sbjct: 166 GGEKVVETEFDIDAKFDHLSAKAKQPVRKRAPSAFLTVQEGCDKFCTFCVVPYTRGAEVS 225 Query: 205 RSLSQVVDEARKL 217 RS+ Q+V+EA ++ Sbjct: 226 RSVDQIVEEAERM 238 >gi|73992243|ref|XP_534385.2| PREDICTED: similar to CDK5 regulatory subunit associated protein 1 isoform a [Canis familiaris] Length = 583 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 157/479 (32%), Positives = 260/479 (54%), Gaps = 38/479 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV D+ + GY R ++ +AD+I+L TC IREKA + +++ L Sbjct: 96 RKVYLETYGCQMNVNDTEIAWSVLQKSGYLRTRNLQEADVILLVTCSIREKAEQTIWNRL 155 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++ LK R++ L + + GC+A+ EEIL R +V+++ GP Y LP LL A Sbjct: 156 QQLKALKTKRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 215 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ + S+++ + + V + +AF++I GCD C++C+VP+TRG E S Sbjct: 216 SGQQAANVLLSLDETYADVMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 272 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDGE------ 243 R ++ +++E RKL + G+ E+TLLGQNVN+++ +G Sbjct: 273 RPVASILEEVRKLSEQGLKEVTLLGQNVNSFQDSSEVQFNNAVSTNLSRGFSTNYKPKKG 332 Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 F+ LL +S + +R+R+T+ HP+D D +++ + D + +HLP QSGS R+L Sbjct: 333 GLRFTYLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVL 392 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 ++M R ++ Y ++I IR P +++SSDFI GF GET++D T+ L+ ++ Y F Sbjct: 393 EAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLREVQYNMGF 452 Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 F YS R T + L + V E VK RL L RE+ N A VG VL+E Sbjct: 453 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANMASVGSTQLVLVEGVS 512 Query: 423 KEKGK-LVGRS--------PWLQSVVLNSKNHNI----GDIIKVRITDVKISTLYGELV 468 K L GR+ P ++ +N+ + + GD + V+IT TL G ++ Sbjct: 513 KRSATDLCGRNDGNLKVIFPDVEMEDINNSDVRVRAQPGDYVLVKITSTSSQTLKGHVL 571 >gi|320094018|ref|ZP_08025843.1| tRNA-I(6)A37 thiotransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979062|gb|EFW10580.1| tRNA-I(6)A37 thiotransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 508 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 159/460 (34%), Positives = 258/460 (56%), Gaps = 41/460 (8%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA------------DLIVLNTCH 71 P+ + V++ GCQMN +DS RM + G V+ + +A D++V+NTC Sbjct: 10 PRTYAVRTLGCQMNEHDSERMAGLLEQAGLLPVDQVPEAAARATDAGDMGADVVVINTCS 69 Query: 72 IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131 +RE AA +++ LG++ +K R + + V GC+AQ E I+ R+P V+ V G Sbjct: 70 VRENAATRLFGNLGQLAAVKRGRPG----MQIAVGGCLAQQMREGIVERAPWVDAVFGTH 125 Query: 132 TYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 LP LL RA + V+ + S++ L R+ A+++I GC+ C Sbjct: 126 NIDVLPALLRRAEHNRAAAVEIEESLKVFPSTLPT-----RRESVYAAWVSISVGCNNTC 180 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 TFC+VP RG E R +++ E + G E+TLLGQNVN++ G G GE+ F+DL Sbjct: 181 TFCIVPRLRGKERDRRPGEILAEVEAVASQGAIEVTLLGQNVNSY-GVGF-GERRAFADL 238 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L ++ ++G+ R+R+T+ HP +D +I A +MP LH+P+QSGSDR+L+ M R + Sbjct: 239 LRAVGGVEGIERVRFTSPHPAAFTDDVIDAMATTPTVMPSLHMPLQSGSDRVLRQMRRSY 298 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + I++R+R+ P AI++D IVGFPGET++DF T+ +V++ +A AF+F YSPR Sbjct: 299 RRERFMGILERVRAAVPAAAITTDIIVGFPGETEEDFAQTLQVVEEARFASAFTFLYSPR 358 Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKG 426 GTP ++ +QV +V E RL+ LQ+++ + N A VG +EVL+ E G++ G Sbjct: 359 PGTPAADREDQVPADVALERYKRLVALQERICAED---NAALVGNGVEVLVSEGDGRKDG 415 Query: 427 ---KLVGRSP-------WLQSVVLNSKNHNIGDIIKVRIT 456 ++ GR+ L + + + GD+++ +T Sbjct: 416 ATRRITGRARDNRLVHVGLPASLSGADRPRPGDMVRASVT 455 >gi|30690642|ref|NP_195357.2| radical SAM domain-containing protein / TRAM domain-containing protein [Arabidopsis thaliana] gi|32129440|sp|Q8H0V1|CK5P1_ARATH RecName: Full=CDK5RAP1-like protein gi|25083016|gb|AAN72033.1| putative protein [Arabidopsis thaliana] gi|30725464|gb|AAP37754.1| At4g36390 [Arabidopsis thaliana] gi|332661250|gb|AEE86650.1| Methylthiotransferase [Arabidopsis thaliana] Length = 640 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 171/492 (34%), Positives = 257/492 (52%), Gaps = 51/492 (10%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYS-- 82 R + ++YGCQMN+ D + + + GY E V + A++I +NTC IRE A ++V+ Sbjct: 130 RIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTDPESAEVIFVNTCAIRENAEQRVWQRL 189 Query: 83 ----FLGRIR--NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 FL R N R K VVV GC+A+ ++IL +V+VV GP Y L Sbjct: 190 NYFWFLKREWKVNAATGRAKSLKPPKVVVLGCMAERLKDKILDSDKMVDVVCGPDAYRDL 249 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 P LLE +G++ ++T S+E+ + +S V N +TAF+++ GC+ C FC+VP Sbjct: 250 PRLLEEVDYGQKGINTLLSLEETYADISPVRISEN---SITAFVSVMRGCNNMCAFCIVP 306 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------------- 243 +TRG E SR + ++ E +L ++GV E+TLLGQNVN++ D E Sbjct: 307 FTRGRERSRPVESIIREVGELWESGVKEVTLLGQNVNSYNDDSADRESGANWEYSEGFSS 366 Query: 244 KCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 +C F+DLL LS +R R+T+ HP+D D L+ D + +HLP Q Sbjct: 367 RCKVKNMGLRFADLLDRLSVEFPEMRFRFTSPHPKDYPDELLYLMRDRHNICNLIHLPAQ 426 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 SG+ RIL+ M R +T Y ++ +IRS+ PD+AI+SDFI GF GET+++ + T+ LV Sbjct: 427 SGNSRILEQMRRGYTREAYLDLVKKIRSIIPDVAITSDFITGFCGETEEEHQETLSLVRA 486 Query: 357 IGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415 +GY A+ F YS R T N + V E VK RL L RE D+ VG Sbjct: 487 VGYDMAYMFAYSMREKTHAHRNYTDDVPEEVKQRRLTELIDAFRETTGPCYDSQVGSTQL 546 Query: 416 VLIEKHGKE--KGKLVGRS-----------PWLQSVVL-----NSKNHNIGDIIKVRITD 457 VL+E K + +L+G++ P L +N IGD ++V+I Sbjct: 547 VLVEGPNKRAPETELIGKTDKGHRVSFVTKPLFDKACLLDGDDLKRNPGIGDFVEVQIEK 606 Query: 458 VKISTLYGELVV 469 ++L+GE + Sbjct: 607 STRASLFGEALA 618 >gi|297798268|ref|XP_002867018.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297312854|gb|EFH43277.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 636 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 169/492 (34%), Positives = 260/492 (52%), Gaps = 51/492 (10%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYS-- 82 R + ++YGCQMN+ D + + + GY E V + A++I +NTC IR+ A ++V+ Sbjct: 127 RIYHETYGCQMNINDMEIVLSIMKNSGYKEVVTDPESAEVIFINTCAIRDNAEQRVWQRL 186 Query: 83 ----FLGRIR--NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 FL R N+ R + VVV GC+A+ ++IL +V+VV GP Y L Sbjct: 187 NYFWFLKREWKVNVAKGRAQSLKPPKVVVLGCMAERLKDKILDSDKMVDVVCGPDAYRDL 246 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 P LLE +G++ ++T S+E+ + +S V N +TAF+++ GC+ C FC+VP Sbjct: 247 PRLLEEVDYGQKGINTLLSLEETYADISPVRISEN---SITAFVSVMRGCNNMCAFCIVP 303 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE------------- 243 +TRG E SR + ++ E +L ++GV E+TLLGQNVN++ D E Sbjct: 304 FTRGRERSRPVESIIREVGELWESGVKEVTLLGQNVNSYNDDSSDPESGANWEYSEGFSS 363 Query: 244 KCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 +C F+DLL LS +R R+T+ HP+D D L+ D + +HLP Q Sbjct: 364 RCKVKNMGLRFADLLDRLSVQFPEMRFRFTSPHPKDYPDELLYLMRDRHNICNLIHLPAQ 423 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 SG+ RIL+ M R +T Y ++ +IRS+ PD+AI+SDFI GF GET+++ + T+ LV Sbjct: 424 SGNSRILEQMRRGYTREAYLDLVKKIRSIIPDVAITSDFITGFCGETEEEHQETLSLVRA 483 Query: 357 IGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415 +GY A+ F YS R T + V E VK RL L + RE ++ VG I Sbjct: 484 VGYDMAYMFAYSMREKTHAHRKYTDDVPEEVKQRRLTELIEAFRETTGPCYNSQVGSIQL 543 Query: 416 VLIEKHGKE--KGKLVGRS-----------PWLQSVVL-----NSKNHNIGDIIKVRITD 457 VL+E K + +L+G++ P + L +N IGD ++VRI Sbjct: 544 VLVEGPNKRAPETELIGKTDKGHRVSFVTKPLFDTACLLDGDDLKRNPEIGDFVEVRIEK 603 Query: 458 VKISTLYGELVV 469 ++L+GE + Sbjct: 604 STRASLFGEALA 615 >gi|226355861|ref|YP_002785601.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Deinococcus deserti VCD115] gi|226317851|gb|ACO45847.1| putative tRNA-i 6A37 modification enzyme MiaB (2-methylthioadenine synthetase) [Deinococcus deserti VCD115] Length = 459 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 160/445 (35%), Positives = 243/445 (54%), Gaps = 22/445 (4%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V +YGCQMN YD+ +E S G + V +D+AD +++NTC +R K +KV S LG +R Sbjct: 5 VITYGCQMNEYDTHLVESQLVSLGADLVQGVDEADFVLVNTCAVRGKPVDKVRSLLGTLR 64 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGK 147 +K R L+V + GC+AQ E + + R V+V++GP + + + LE RF Sbjct: 65 KIKAQR-----PLVVGMMGCLAQLEEGQQMARKFEVDVLLGPGSLLDIGQALESNERF-- 117 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + ++ K E + K + A LTI GCD CT+C+VP TRG ++SRS Sbjct: 118 ------WGLQFKDELHEHIPPAPTGK--LQAHLTIMRGCDHHCTYCIVPTTRGPQVSRSP 169 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 ++ E + GV E+TLLGQNVNA+ +G L G +F+DLL L G+ R++ Sbjct: 170 DDILRELDLQLAAGVQEVTLLGQNVNAYGVDQGARLAGYP-SFADLL-RLVGRSGVRRIK 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +TTSHP + ++ + A + + ++HLPVQSGS+ +L+ M R +T +Y Q I IR Sbjct: 228 FTTSHPMNFTEDVAAAMAETPAVCEFVHLPVQSGSNHVLRRMAREYTREKYLQHIAEIRR 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P +++D IVGFPGET++DF+ T+ L D++GY A+ F YSPR GTP + Sbjct: 288 HLPHAVLATDIIVGFPGETEEDFQDTLSLYDEVGYDSAYMFIYSPRPGTPSYKHFADLPR 347 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ-SVVLNSK 443 +K ERL L + +E N VG + EVL+ + G L G + +VV + Sbjct: 348 ELKTERLQRLIARQKEWSARKNAEKVGSVQEVLLRGDAHDAGFLEGHTRGNHPTVVPKAI 407 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 + + VRI +YG ++ Sbjct: 408 GASQAGVYPVRIEHATPHMMYGRIL 432 >gi|4006921|emb|CAB16849.1| putative protein [Arabidopsis thaliana] gi|7270587|emb|CAB80305.1| putative protein [Arabidopsis thaliana] Length = 587 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 174/512 (33%), Positives = 263/512 (51%), Gaps = 52/512 (10%) Query: 7 LIGVAHMVSQIVDQCIVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADL 64 L G + +D I + R + ++YGCQMN+ D + + + GY E V + A++ Sbjct: 57 LFGFILALRSTLDSDIASKGRIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTDPESAEV 116 Query: 65 IVLNTCHIREKAAEKVYSFLGRIRNLK--------NSRIKEGGDLLVVVAGCVAQAEGEE 116 I +NTC IRE A ++V+ L LK R K VVV GC+A+ ++ Sbjct: 117 IFVNTCAIRENAEQRVWQRLNYFWFLKREWKVNAATGRAKSLKPPKVVVLGCMAERLKDK 176 Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV 176 IL +V+VV GP Y LP LLE +G++ ++T S+E+ + +S V N + Sbjct: 177 ILDSDKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISEN---SI 233 Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236 TAF+++ GC+ C FC+VP+TRG E SR + ++ E +L ++GV E+TLLGQNVN++ Sbjct: 234 TAFVSVMRGCNNMCAFCIVPFTRGRERSRPVESIIREVGELWESGVKEVTLLGQNVNSYN 293 Query: 237 GKGLDGE-------------KCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276 D E +C F+DLL LS +R R+T+ HP+D D Sbjct: 294 DDSADRESGANWEYSEGFSSRCKVKNMGLRFADLLDRLSVEFPEMRFRFTSPHPKDYPDE 353 Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336 L+ D + +HLP QSG+ RIL+ M R +T Y ++ +IRS+ PD+AI+SDFI Sbjct: 354 LLYLMRDRHNICNLIHLPAQSGNSRILEQMRRGYTREAYLDLVKKIRSIIPDVAITSDFI 413 Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQ 395 GF GET+++ + T+ LV +GY A+ F YS R T N + V E VK RL L Sbjct: 414 TGFCGETEEEHQETLSLVRAVGYDMAYMFAYSMREKTHAHRNYTDDVPEEVKQRRLTELI 473 Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRS-----------PWLQSVVL-- 440 RE D+ VG VL+E K + +L+G++ P L Sbjct: 474 DAFRETTGPCYDSQVGSTQLVLVEGPNKRAPETELIGKTDKGHRVSFVTKPLFDKACLLD 533 Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELVV 469 +N IGD ++V+I ++L+GE + Sbjct: 534 GDDLKRNPGIGDFVEVQIEKSTRASLFGEALA 565 >gi|302389477|ref|YP_003825298.1| RNA modification enzyme, MiaB family [Thermosediminibacter oceani DSM 16646] gi|302200105|gb|ADL07675.1| RNA modification enzyme, MiaB family [Thermosediminibacter oceani DSM 16646] Length = 441 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 153/453 (33%), Positives = 257/453 (56%), Gaps = 17/453 (3%) Query: 17 IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 ++ + I+P++ + GC++N Y+S M ++F ++GYE V D AD+ V+NTC + + Sbjct: 1 MIGEVIMPKKVAFYTLGCKVNQYESDAMAELFKNRGYELVGFDDVADVYVINTCTVTNEG 60 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 A K R + + + + V GC AQ E EE+ R P V+VVVG + +++ Sbjct: 61 ARKS-------RQIIRKAARRNPEATIAVVGCYAQLEAEEV-SRIPGVDVVVGTKDRHKI 112 Query: 137 PELLERA-RFGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 +L+E+A + +++++ + ++ + FE ++ G R R AFL IQEGC+ FC++C+ Sbjct: 113 VDLVEQAGKNNEKIIEVEDIMQTRNFEEIAF-RGHRQRTR---AFLKIQEGCNMFCSYCI 168 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 +PY RG SR+L ++ EA L +G EI L G ++ + G G T D++ L Sbjct: 169 IPYVRGPVRSRTLESIIREAENLAGDGFKEIVLTGIHLGLY-GADFKGGP-TLYDVIERL 226 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 S I+G+ R+R ++ ++SD LIK LD + H+P+QSGSDRILK MNRR+T E Sbjct: 227 SRIEGIKRIRLSSIEAMELSDDLIKKLASLDNFCHHFHIPLQSGSDRILKLMNRRYTTAE 286 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + + + IR + PD+ I++D IVGFPGETD+DF T +++ +++ FK+SPR GTP Sbjct: 287 FEERLRFIRDIMPDVGITTDVIVGFPGETDEDFEITRKFIERAAFSRLHVFKFSPRKGTP 346 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 + M +Q+ VK R L + R + F D G++++VL E+ +G G + Sbjct: 347 AAEMPDQIPGPVKESRSRELIRLSRRLERDFRDGLTGKVLDVLFEERDN-RGLYHGLTDN 405 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 V + S ++ VR+ + + ++GE+ Sbjct: 406 YIRVAVWSDQDLHNRLLPVRLIENRDEYIFGEI 438 >gi|268679070|ref|YP_003303501.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurospirillum deleyianum DSM 6946] gi|268617101|gb|ACZ11466.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurospirillum deleyianum DSM 6946] Length = 438 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 162/452 (35%), Positives = 248/452 (54%), Gaps = 27/452 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GC MNV DS + ++ + Y +++ +ADLI++NTC +REK K++S Sbjct: 7 KKLYIETLGCAMNVRDSEHIIAELGDKENYVLTDNLQEADLILVNTCSVREKPVSKLFSE 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G+ N + KEG + V GC A G+EI +R+P VN VVG + ++ + Sbjct: 67 IGKY----NLQKKEGAK--IGVCGCTASHLGKEIFKRAPYVNFVVGARNVSKIATAVNTE 120 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +F VD DY D G Y R A++ I GCDK CT+C+VP+TRG EI Sbjct: 121 KF--LSVDIDYDESD------YAFGDY-RNNLYKAYVNISIGCDKKCTYCIVPHTRGDEI 171 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLLYSLSEIKGLV 261 S ++ EA+K G EI LLGQNVN + R EK FSDLL +SEI+ + Sbjct: 172 SIPADLIIKEAQKAAQKGAKEIFLLGQNVNNYGKRFSSSTHEKMDFSDLLNRVSEIEEVE 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HP M D ++ + +H+P+QSGS +IL +M R ++ + + Sbjct: 232 RIRFTSPHPLHMDDKFLETFAHNPKVCKSMHMPLQSGSTQILAAMKRGYSKEWFLDRALK 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R++ PD++IS+D IVGFPGE+D DF T+D++ ++ + Q F+FKYS R T + Q Sbjct: 292 LRAMIPDVSISTDIIVGFPGESDADFEDTLDVMRQVRFEQVFAFKYSARPLTKAAEFTNQ 351 Query: 382 VDENVKAERLLCLQ----KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 VD V +ERL LQ L E S D I+ L + G L GR+ Sbjct: 352 VDNEVASERLDRLQVMQDTILDEIATSRTDKIYPVYIDEL-----RNSGFLAGRTDNNAL 406 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 V + + +G I ++IT+ K +LYGE+V+ Sbjct: 407 VQIKGDENLLGQTIPIKITNPKRLSLYGEIVL 438 >gi|28872784|ref|NP_057166.3| CDK5 regulatory subunit-associated protein 1 isoform b [Homo sapiens] gi|119596725|gb|EAW76319.1| CDK5 regulatory subunit associated protein 1, isoform CRA_b [Homo sapiens] gi|158257582|dbj|BAF84764.1| unnamed protein product [Homo sapiens] Length = 497 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 158/488 (32%), Positives = 265/488 (54%), Gaps = 39/488 (7%) Query: 17 IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 ++D+ + QR ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREK Sbjct: 1 MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 60 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A + +++ L +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y Sbjct: 61 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 120 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 LP LL A G++ + S+++ + + V + +AF++I GCD C++C+V Sbjct: 121 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 177 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240 P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R +G Sbjct: 178 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 237 Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 T F+ LL +S + +R+R+T+ HP+D D +++ + D + +HLP Sbjct: 238 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 297 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 QSGS R+L++M R ++ Y +++ IR P +++SSDFI GF GET++D T+ L+ Sbjct: 298 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 357 Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413 ++ Y F F YS R T + L + V E VK RL L RE+ N VG Sbjct: 358 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCT 417 Query: 414 IEVLIEKHGKEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKI 460 VL+E K L GR+ L+ + +++ ++ GD + V+IT Sbjct: 418 QLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASS 477 Query: 461 STLYGELV 468 TL G ++ Sbjct: 478 QTLRGHVL 485 >gi|62897049|dbj|BAD96465.1| CDK5 regulatory subunit associated protein 1 isoform a variant [Homo sapiens] Length = 586 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 156/487 (32%), Positives = 263/487 (54%), Gaps = 38/487 (7%) Query: 17 IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 ++D+ + QR ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREK Sbjct: 91 MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A + +++ L +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 LP LL A G++ + S+++ + + V + +AF++I GCD C++C+V Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240 P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R +G Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 327 Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 T F+ LL +S + +R+R+T+ HP+D D +++ + D + +HLP Sbjct: 328 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 387 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 QSGS R+L++M R ++ Y +++ IR P +++SSDFI GF GET++D T+ L+ Sbjct: 388 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 447 Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414 ++ Y F F YS R + + V E VK RL L RE+ N VG Sbjct: 448 REVQYNMGFLFAYSMRQTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQ 507 Query: 415 EVLIEKHGKEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKIS 461 VL+E K L GR+ L+ + +++ ++ GD + V+IT Sbjct: 508 LVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQ 567 Query: 462 TLYGELV 468 TL G ++ Sbjct: 568 TLRGHVL 574 >gi|329911495|ref|ZP_08275546.1| tRNA-i(6)A37 methylthiotransferase [Oxalobacteraceae bacterium IMCC9480] gi|327545867|gb|EGF30978.1| tRNA-i(6)A37 methylthiotransferase [Oxalobacteraceae bacterium IMCC9480] Length = 306 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 133/287 (46%), Positives = 185/287 (64%), Gaps = 3/287 (1%) Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 ++I EGC K+C++CVVPYTRG E+SR V+ E L GV EITLLGQNVNA+RG Sbjct: 1 MSIMEGCSKYCSYCVVPYTRGEEVSRRFDDVLAEVAGLAAQGVKEITLLGQNVNAFRGVM 60 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 DGE F+ L+ ++EI G+ R+R+ TSHP++ S LI A+ + L+ +L+LP Q GS Sbjct: 61 ADGEIADFALLIEFIAEIDGIERIRFVTSHPKEFSQRLIDAYAKVPKLVDHLYLPAQHGS 120 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 DR+L +M R +TA EY+ II R+R+VRP+IAISSDFIVGFPGET+ DF A M L+D IGY Sbjct: 121 DRVLMAMKRGYTALEYKSIIRRLRAVRPNIAISSDFIVGFPGETEADFEAMMKLIDDIGY 180 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 +FSF +SPR GTP + + + VK RL LQ + ++DA VGQ++ VL+E Sbjct: 181 DNSFSFIFSPRPGTPAATLEDDTPHAVKLARLQRLQAVIDANTRRYSDAMVGQVVRVLVE 240 Query: 420 -KHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 K+ G GR+ + V+N G + ++ D+ I+ +G Sbjct: 241 GPSKKDAGDFQGRAE--NNRVVNFAAGPDGASLVGQLLDLTITHSFG 285 >gi|194379922|dbj|BAG58313.1| unnamed protein product [Homo sapiens] Length = 534 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 158/488 (32%), Positives = 265/488 (54%), Gaps = 39/488 (7%) Query: 17 IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 ++D+ + QR ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREK Sbjct: 38 MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 97 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A + +++ L +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y Sbjct: 98 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 157 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 LP LL A G++ + S+++ + + V + +AF++I GCD C++C+V Sbjct: 158 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 214 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240 P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R +G Sbjct: 215 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 274 Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 T F+ LL +S + +R+R+T+ HP+D D +++ + D + +HLP Sbjct: 275 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 334 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 QSGS R+L++M R ++ Y +++ IR P +++SSDFI GF GET++D T+ L+ Sbjct: 335 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 394 Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413 ++ Y F F YS R T + L + V E VK RL L RE+ N VG Sbjct: 395 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCT 454 Query: 414 IEVLIEKHGKEKG-KLVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKI 460 VL+E K L GR+ L+ + +++ ++ GD + V+IT Sbjct: 455 QLVLVEGLSKRSATALCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASS 514 Query: 461 STLYGELV 468 TL G ++ Sbjct: 515 QTLRGHVL 522 >gi|28872782|ref|NP_057492.2| CDK5 regulatory subunit-associated protein 1 isoform a [Homo sapiens] gi|29791797|gb|AAH50706.1| CDK5 regulatory subunit associated protein 1 [Homo sapiens] gi|56205141|emb|CAI19394.1| CDK5 regulatory subunit associated protein 1 [Homo sapiens] gi|119596729|gb|EAW76323.1| CDK5 regulatory subunit associated protein 1, isoform CRA_f [Homo sapiens] gi|208965952|dbj|BAG72990.1| CDK5 regulatory subunit associated protein 1 [synthetic construct] Length = 587 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 158/488 (32%), Positives = 265/488 (54%), Gaps = 39/488 (7%) Query: 17 IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 ++D+ + QR ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREK Sbjct: 91 MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A + +++ L +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 LP LL A G++ + S+++ + + V + +AF++I GCD C++C+V Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240 P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R +G Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 327 Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 T F+ LL +S + +R+R+T+ HP+D D +++ + D + +HLP Sbjct: 328 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 387 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 QSGS R+L++M R ++ Y +++ IR P +++SSDFI GF GET++D T+ L+ Sbjct: 388 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 447 Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413 ++ Y F F YS R T + L + V E VK RL L RE+ N VG Sbjct: 448 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCT 507 Query: 414 IEVLIEKHGKEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKI 460 VL+E K L GR+ L+ + +++ ++ GD + V+IT Sbjct: 508 QLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASS 567 Query: 461 STLYGELV 468 TL G ++ Sbjct: 568 QTLRGHVL 575 >gi|268611648|ref|ZP_06145375.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ruminococcus flavefaciens FD-1] Length = 456 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 155/438 (35%), Positives = 243/438 (55%), Gaps = 18/438 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + +V+S+GCQ +V D +++ + G ++AD+I+LNTC +RE A ++V+ +G Sbjct: 21 KAYVRSFGCQQSVSDGEKIKGLLGLMGCSFTEDENEADMIILNTCAVRENAEDRVFGIVG 80 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCV-AQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERA 143 ++ LK + L++ +AGC+ AQ+ E +++S P V+ V+G LP LL Sbjct: 81 SMKKLKELK----PSLIIGIAGCMTAQSHVAEKIKKSYPQVDFVMGTSAISSLPHLLLEC 136 Query: 144 RFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G + D S D F + I D + A + + GC+ FCT+C+VPY RG Sbjct: 137 LNGAKF-SADISEYDDFSAVVPQIRDSSFK------ASVPVMFGCNNFCTYCIVPYVRGR 189 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR +++E R L+ +G EI LLGQNVN++ GK L+ TF LL L +I+G Sbjct: 190 ERSRQPQDIINEVRGLVRDGYKEIMLLGQNVNSY-GKDLEN-GMTFPQLLRELDKIEGDF 247 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R+ +SHP+D + L A D + +LHLPVQSGS+ +L+ MNRR+T +Y + +D Sbjct: 248 WIRFMSSHPKDATKKLADAIFDCTKVAKHLHLPVQSGSNDVLRRMNRRYTVEKYMETVDY 307 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR PD ++++D IVGFP E D+DF AT+D++ ++ Y +SF YS R GT + M + Sbjct: 308 IRQRDPDFSLTTDLIVGFPDEKDEDFEATLDIIRRVKYDNIYSFIYSKRTGTKAAEMDDP 367 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVL 440 + + K R+ L + RE +G+ + VL + K K +G L G+S V Sbjct: 368 ITDEEKGMRMRRLLEVQREISSEHYKRFIGRTMRVLADGKAKKREGWLTGKSSEFIIVEF 427 Query: 441 NSKNHNIGDIIKVRITDV 458 + IG + V ITD Sbjct: 428 EGDSSLIGQFVDVEITDA 445 >gi|217967463|ref|YP_002352969.1| RNA modification enzyme, MiaB family [Dictyoglomus turgidum DSM 6724] gi|217336562|gb|ACK42355.1| RNA modification enzyme, MiaB family [Dictyoglomus turgidum DSM 6724] Length = 441 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 161/445 (36%), Positives = 253/445 (56%), Gaps = 13/445 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++ + +YGCQMN DS ++ + S GY M++ADLI+LNTC +RE+A EKV+ LG Sbjct: 3 KYHIITYGCQMNKSDSEKVAGILESLGYIPSEKMEEADLILLNTCSVRERAEEKVFGKLG 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144 +R LK K LL+ + GC+AQ EE++ + P V+ V+G + LP++LE Sbjct: 63 ELRKLKKKNQK----LLIGIFGCMAQRMKEELIEKFPHVDFVLGSYKFTELPKVLESLND 118 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K++V + + + + I+ R+ A++ I GC+ FCT+C+VPY RG E S Sbjct: 119 NNKKIVLAEDNPKPEEVDFRII----RRENKFQAWIPIIYGCNNFCTYCIVPYLRGKEKS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +++ E L + GV E+TLLGQNV+++ G D +DLL + +I G+ R+R Sbjct: 175 RDPQEIIKEIEHLANQGVVEVTLLGQNVDSY---GKDLGNVDLADLLVEIHKIPGIKRIR 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHPRD+SD LI + P+ HLP+Q+GSDRIL+ M R +T EY+ +I++IR+ Sbjct: 232 FLTSHPRDVSDKLINVVATHPKICPHWHLPLQAGSDRILRRMGRGYTYNEYKALIEKIRA 291 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P + S+D IVGFPGE ++DF AT +++I + YS R GTP ++ + V Sbjct: 292 KIPRASFSTDIIVGFPGEEEEDFLATRRALEEIKFDTVNLAIYSKRPGTPAASYDDPVPY 351 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSK 443 K + L+ R+ N + +G+ VL E + K +L GR+ + V + Sbjct: 352 ETKKKWFDELENLQRKIIYERNLSMIGKEELVLAEGVNPKNPKELSGRTENYRLVFFEAD 411 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 IG + VRI + ++ +L GE + Sbjct: 412 RKLIGKFLLVRIIEARLWSLRGEAI 436 >gi|296125881|ref|YP_003633133.1| RNA modification enzyme, MiaB family [Brachyspira murdochii DSM 12563] gi|296017697|gb|ADG70934.1| RNA modification enzyme, MiaB family [Brachyspira murdochii DSM 12563] Length = 435 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 153/454 (33%), Positives = 249/454 (54%), Gaps = 30/454 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F++++YGCQMN DS + + +G+ + + ++AD I++NTC +R A E+V+S Sbjct: 2 KNFYLENYGCQMNKADSNSLINSLMQEGFIQTENYENADNIIINTCSVRAHAEERVFS-- 59 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE--EILRRSPIVNVV--VGPQTYYRLPELL 140 R++ +R K D +++ GC+AQ E E L + I +V V Y + E+ Sbjct: 60 -RVKLFNANRKKNKKDTKIIIMGCMAQTSKEKLESLGVNKIFDVYNEVNIIDYLKDEEVF 118 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R + + Y EDK + AF+ I GC+ +CT+C+VP+TRG Sbjct: 119 VRKFNDNYIFNKSYVDEDKPHK---------------AFIPISHGCNNWCTYCIVPHTRG 163 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--- 257 +SR ++++E ++LID+G EITLLGQNVN++ G +D E F++LLY + ++ Sbjct: 164 KMVSRKSYEIIEELKRLIDDGAKEITLLGQNVNSY-GLDIDNE-INFTELLYKIDKVIDE 221 Query: 258 --KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 K V +R+ TSHP+D L A +L+ L ++HLP QSGSDRILK MNR++T EY Sbjct: 222 KSKNKVWIRFLTSHPKDFDKDLADAIWNLNSLCKHIHLPFQSGSDRILKLMNRKYTKEEY 281 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + +R D IS+D IVG+ ET+D++ T++L++ IG+ +A+ +KYS R G+ Sbjct: 282 LTKVSYLRDYAKDFPISTDVIVGYADETEDEYNETLELLESIGFEEAYLYKYSEREGSIA 341 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 + D+ A RL L RE VG+ V+I+ K+ + RS Sbjct: 342 YKKRVEYDKASGARRLTKLVNYQRELAQKLLANQVGKKTSVMIDDTAKDNMHYLCRSKEN 401 Query: 436 QSVVL-NSKNHNIGDIIKVRITDVKISTLYGELV 468 + +++ K N+GDI + ++K TL G+ + Sbjct: 402 RIILIKKEKELNMGDIFNAEVAEIKSHTLIGKFI 435 >gi|147794658|emb|CAN73510.1| hypothetical protein VITISV_007911 [Vitis vinifera] Length = 590 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 172/497 (34%), Positives = 260/497 (52%), Gaps = 52/497 (10%) Query: 22 IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEK 79 I+P+ R + ++YGCQMN+ D + + GY E V + A++I +NTC IR+ A +K Sbjct: 71 ILPRGRIYHETYGCQMNINDMEIVLSIMKKAGYNEVVEVPESAEVIFINTCAIRDNAEQK 130 Query: 80 VYSFLGRIRNLK-----NSRIKEGGDLL---VVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131 V+ L LK N I L VVV GC+A+ ++IL +V+VV GP Sbjct: 131 VWQRLNYFWFLKRHWKSNVSIGRADSLHPPKVVVLGCMAERLKDKILDADKMVDVVCGPD 190 Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 Y LP LLE +G++ ++T S+E+ + +S V K VTAF++I GC+ C+ Sbjct: 191 AYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRIS---KNSVTAFVSIMRGCNNMCS 247 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-GKGLDGE------- 243 FC+VP+TRG E SR + +V E +L GV E+ LLGQNVN++ G D E Sbjct: 248 FCIVPFTRGRERSRPVESIVREVAELWKEGVKEVMLLGQNVNSYNDASGFDKEVEPGANW 307 Query: 244 --------KCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288 KC FSDLL LS +R RYT+ HP+D D L+ D + Sbjct: 308 KLSEGFSSKCKVKKMGLRFSDLLDRLSTEFPEMRFRYTSPHPKDFPDELLYLMRDRYNVC 367 Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348 +HLP Q+GS +L+ M R +T Y ++ +IR + PD+ I+SDFI GF GET++++ Sbjct: 368 KSIHLPAQTGSSTVLERMRRGYTREAYLDLVQKIRRIVPDVGITSDFICGFCGETEEEYA 427 Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFND 407 T+ LV +GY A+ F YS R T N ++ V +N+K RL + + RE D Sbjct: 428 DTISLVKAVGYDMAYMFAYSMREKTHAHRNYVDDVPDNIKQRRLAEMIEVFRESTGQCYD 487 Query: 408 ACVGQIIEVLIEKHGKEK--GKLVGRS-------------PWLQSVVLNSKNHNIGDIIK 452 + +G + VL+E K +L+G++ P V ++N +GD ++ Sbjct: 488 SQIGTVQLVLVEGPNKRAPDTELIGKTDRGHRVSFKNTPVPHWDDDVGGNQNPRVGDFVE 547 Query: 453 VRITDVKISTLYGELVV 469 VRI ++L+GE + Sbjct: 548 VRILTSTRASLFGEALA 564 >gi|225431257|ref|XP_002274814.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 626 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 172/497 (34%), Positives = 260/497 (52%), Gaps = 52/497 (10%) Query: 22 IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEK 79 I+P+ R + ++YGCQMN+ D + + GY E V + A++I +NTC IR+ A +K Sbjct: 107 ILPRGRIYHETYGCQMNINDMEIVLSIMKKAGYNEVVEVPESAEVIFINTCAIRDNAEQK 166 Query: 80 VYSFLGRIRNLK-----NSRIKEGGDLL---VVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131 V+ L LK N I L VVV GC+A+ ++IL +V+VV GP Sbjct: 167 VWQRLNYFWFLKRHWKSNVSIGRADSLHPPKVVVLGCMAERLKDKILDADKMVDVVCGPD 226 Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 Y LP LLE +G++ ++T S+E+ + +S V N VTAF++I GC+ C+ Sbjct: 227 AYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKN---SVTAFVSIMRGCNNMCS 283 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-GKGLDGE------- 243 FC+VP+TRG E SR + +V E +L GV E+ LLGQNVN++ G D E Sbjct: 284 FCIVPFTRGRERSRPVESIVREVAELWKEGVKEVMLLGQNVNSYNDASGFDKEVEPGANW 343 Query: 244 --------KCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288 KC FSDLL LS +R RYT+ HP+D D L+ D + Sbjct: 344 KLSEGFSSKCKVKKMGLRFSDLLDRLSTEFPEMRFRYTSPHPKDFPDELLYLMRDRYNVC 403 Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348 +HLP Q+GS +L+ M R +T Y ++ +IR + PD+ I+SDFI GF GET++++ Sbjct: 404 KSIHLPAQTGSSTVLERMRRGYTREAYLDLVQKIRRIVPDVGITSDFICGFCGETEEEYA 463 Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFND 407 T+ LV +GY A+ F YS R T N ++ V +N+K RL + + RE D Sbjct: 464 DTISLVKAVGYDMAYMFAYSMREKTHAHRNYVDDVPDNIKQRRLAEMIEVFRESTGQCYD 523 Query: 408 ACVGQIIEVLIEKHGKEKG--KLVGRS-------------PWLQSVVLNSKNHNIGDIIK 452 + +G + VL+E K +L+G++ P V ++N +GD ++ Sbjct: 524 SQIGTVQLVLVEGPNKRAPDTELIGKTDRGHRVSFKNTPVPHWDDDVGGNQNPRVGDFVE 583 Query: 453 VRITDVKISTLYGELVV 469 VRI ++L+GE + Sbjct: 584 VRILTSTRASLFGEALA 600 >gi|300770384|ref|ZP_07080263.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sphingobacterium spiritivorum ATCC 33861] gi|300762860|gb|EFK59677.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sphingobacterium spiritivorum ATCC 33861] Length = 478 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 154/453 (33%), Positives = 254/453 (56%), Gaps = 16/453 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + +G+E ++AD++ +NTC IRE A +V + Sbjct: 32 RKLYIESYGCQMNFSDSEIVASILMDKGFETTKDFNEADVVFINTCSIRENAETRVRN-- 89 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R++ + ++ K G ++V V GC+A+ + L +V+VVVGP Y LP L+E+ Sbjct: 90 -RLKEFEFAKSKNPG-MIVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRDLPNLIEQVD 147 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + V+ S E+ + ++ V N G+TAF++I GCD C+FCVVP+TRG E S Sbjct: 148 DGAKAVNVLLSREETYADINPVRLNTN---GITAFISIMRGCDNMCSFCVVPFTRGRERS 204 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG------LDGEKCTFSDLLYSLSEIK 258 R + ++ EA+ L + G E+TLLGQNV++++ E F+ LL ++++ Sbjct: 205 RDVDSIIKEAQDLFNAGYREVTLLGQNVDSYKFTAPVAEGESPAEPVNFAQLLAKVADVS 264 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L+R+R++TSHP+D++D ++ + + Y+HLPVQSG+ R+L+ MNR + Y Sbjct: 265 PLLRVRFSTSHPKDITDEVLHTMARYENICNYIHLPVQSGNSRVLELMNRTYDRAWYIDR 324 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +D IR + P+ IS+D I GF ET+++ + T+ ++D + Y A+ F YS R GT + Sbjct: 325 VDAIRRILPECGISTDVITGFCTETEEEHQETLSMMDYVKYDYAYMFAYSERPGTLAAKR 384 Query: 379 LE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQ 436 E + E +K RL + K R VG++ ++LIE + K + GR+ Sbjct: 385 YEDDIPEEIKKRRLTEVVAKQRLHSHYRIQNFVGKVHKILIEGYSKRSDQDFAGRNDQNA 444 Query: 437 SVVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468 VV N + IGD + V +TL G +V Sbjct: 445 MVVFPVDNRYKIGDYVNVIGESCTSATLLGRIV 477 >gi|10436223|dbj|BAB14760.1| unnamed protein product [Homo sapiens] Length = 587 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 158/488 (32%), Positives = 264/488 (54%), Gaps = 39/488 (7%) Query: 17 IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 ++D+ + QR ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREK Sbjct: 91 MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A + +++ L +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 LP LL A G++ + S+++ + + V + +AF++I GCD C++C+V Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240 P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R +G Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 327 Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 T F+ LL +S + +R+R+T+ HP+D D +++ + D + +HLP Sbjct: 328 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 387 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 QSGS R+L++M R ++ Y +++ IR P +++SSDFI GF GET++D T+ L+ Sbjct: 388 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 447 Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413 + Y F F YS R T + L + V E VK RL L RE+ N VG Sbjct: 448 REAQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCT 507 Query: 414 IEVLIEKHGKEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKI 460 VL+E K L GR+ L+ + +++ ++ GD + V+IT Sbjct: 508 QLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASS 567 Query: 461 STLYGELV 468 TL G ++ Sbjct: 568 QTLKGHVL 575 >gi|297735074|emb|CBI17436.3| unnamed protein product [Vitis vinifera] Length = 663 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 166/475 (34%), Positives = 257/475 (54%), Gaps = 32/475 (6%) Query: 22 IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEK 79 I+P+ R + ++YGCQMN+ D + + GY E V + A++I +NTC IR+ A +K Sbjct: 178 ILPRGRIYHETYGCQMNINDMEIVLSIMKKAGYNEVVEVPESAEVIFINTCAIRDNAEQK 237 Query: 80 VYSFLGRIRNLK-----NSRIKEGGDLL---VVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131 V+ L LK N I L VVV GC+A+ ++IL +V+VV GP Sbjct: 238 VWQRLNYFWFLKRHWKSNVSIGRADSLHPPKVVVLGCMAERLKDKILDADKMVDVVCGPD 297 Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 Y LP LLE +G++ ++T S+E+ + +S V K VTAF++I GC+ C+ Sbjct: 298 AYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRIS---KNSVTAFVSIMRGCNNMCS 354 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-GKGLDGEKCTFSDL 250 FC+VP+TRG E SR + +V E +L GV E+ LLGQNVN++ G D E ++ Sbjct: 355 FCIVPFTRGRERSRPVESIVREVAELWKEGVKEVMLLGQNVNSYNDASGFDKEVEPGAN- 413 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 + LSE +R RYT+ HP+D D L+ D + +HLP Q+GS +L+ M R + Sbjct: 414 -WKLSEEFPEMRFRYTSPHPKDFPDELLYLMRDRYNVCKSIHLPAQTGSSTVLERMRRGY 472 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 T Y ++ +IR + PD+ I+SDFI GF GET++++ T+ LV +GY A+ F YS R Sbjct: 473 TREAYLDLVQKIRRIVPDVGITSDFICGFCGETEEEYADTISLVKAVGYDMAYMFAYSMR 532 Query: 371 LGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--K 427 T N ++ V +N+K RL + + RE D+ +G + VL+E K + Sbjct: 533 EKTHAHRNYVDDVPDNIKQRRLAEMIEVFRESTGQCYDSQIGTVQLVLVEGPNKRAPDTE 592 Query: 428 LVGRS-------------PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 L+G++ P V ++N +GD ++VRI ++L+GE + Sbjct: 593 LIGKTDRGHRVSFKNTPVPHWDDDVGGNQNPRVGDFVEVRILTSTRASLFGEALA 647 >gi|154497029|ref|ZP_02035725.1| hypothetical protein BACCAP_01322 [Bacteroides capillosus ATCC 29799] gi|150273428|gb|EDN00556.1| hypothetical protein BACCAP_01322 [Bacteroides capillosus ATCC 29799] Length = 471 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 157/449 (34%), Positives = 247/449 (55%), Gaps = 23/449 (5%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 FV +YGCQ N DS R+ GY +A +IV+NTC IRE A ++V +G + Sbjct: 37 FVDTYGCQQNEADSERIRGYLKEMGYGFTQDEKEAAVIVINTCAIREHAEQRVLGNVGAL 96 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLER--A 143 + K ++ + ++ + GC+ Q R+ V++V GP +R PE L R Sbjct: 97 VHTK----RKNPNQIICLCGCMVQEPHNAAKIRTSYRHVDMVFGPHALWRFPEFLYRILT 152 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R G R+ +T E + +V R+ GV A+++I GC+ FC++C+VPY RG E Sbjct: 153 RRG-RIFETADDPGSIAEGIPVV-----RQNGVKAWVSIMYGCNNFCSYCIVPYVRGRER 206 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E +L G EITLLGQNVN++ GK L E F+DLL ++ + G + Sbjct: 207 SRDPEGILAEVEELAKAGYKEITLLGQNVNSY-GKDLP-EPMDFADLLRKVNAVPGDFLI 264 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP+D ++ L A + + + P +HLPVQ+G++R+LK+MNR +T Y + + ++R Sbjct: 265 RFMTSHPKDATEKLFDAMAECEKVAPVIHLPVQAGNNRVLKAMNRVYTREIYLEKVRQLR 324 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PDI ++SD IVGFPGET ++F TM L+ ++ Y F+F YSPR GTP + M + + Sbjct: 325 QRIPDIVLTSDIIVGFPGETTEEFEDTMSLLREVEYDALFTFIYSPREGTPAAKMPDPMS 384 Query: 384 ENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439 + K+ +RL+ LQ ++ ++ + A G+ I L++ + + L R+P + V Sbjct: 385 KEEKSANFQRLVDLQNEISLKK---HQAYEGKTIRCLVDGRSDDPRNNLTARTPGGRLVH 441 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + IT L+GEL Sbjct: 442 FTGDEKLIGTYQNLTITGCSTWALFGELA 470 >gi|327289365|ref|XP_003229395.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like [Anolis carolinensis] Length = 591 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 163/477 (34%), Positives = 252/477 (52%), Gaps = 38/477 (7%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P + ++++YGCQMNV D+ + GY+R +++AD+I+L TC IREKA + +++ Sbjct: 103 PGKVYLETYGCQMNVNDTEIAWSILQRSGYQRTTRLEEADVILLVTCSIREKAEQTIWNR 162 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L ++ LK R G L + + GC+A+ E+IL R +V+VV GP +Y LP LL A Sbjct: 163 LKHLKTLKLKRPASQGALRIGILGCMAERLKEKILDRERLVDVVAGPDSYRDLPRLLTVA 222 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G++ + S+E+ + + V +AF++I GCD CT+C+VP+TRG E Sbjct: 223 ESGQQAANVLLSLEETYADILPVQ---TNPSSTSAFVSIMRGCDNMCTYCIVPFTRGRER 279 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDG------ 242 SR + ++ E + L D GV E+TLLGQNVN++R +G Sbjct: 280 SRPIVSILQEVQMLSDQGVKEVTLLGQNVNSYRDVSEVQFLSSAPSHLSRGFSTVYRPKQ 339 Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 F++LL +S I +R+R+T+ HP+D D + + + + LHLPVQSGS RI Sbjct: 340 GGLRFAELLDRVSVIDPEMRIRFTSPHPKDFPDEVFQLMKERHNICKQLHLPVQSGSSRI 399 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L++M R +T Y +++ +R P + + SD I GF GET+ D + T+ LV ++GY A Sbjct: 400 LEAMRRGYTREAYLELVHHVRDSLPGVTLGSDIIAGFCGETEADHQQTVSLVQEVGYRTA 459 Query: 363 FSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 F F YS R T + L + V +VK R+ L RE N A VGQ+ VL+E Sbjct: 460 FIFAYSERQKTRAFHRLKDDVPLDVKRRRVKELTDVFREGASKANAAAVGQMQVVLVEGP 519 Query: 422 GKEKG-KLVGRSPWLQSVVL------------NSKNHNIGDIIKVRITDVKISTLYG 465 K +L GR+ V+ ++ + GD + V+I+ TL G Sbjct: 520 SKRSALELSGRNDGNIKVIFPDVKMDDGTGSGSTVHAQPGDYVLVKISSANSQTLKG 576 >gi|255560986|ref|XP_002521505.1| radical sam protein, putative [Ricinus communis] gi|223539183|gb|EEF40776.1| radical sam protein, putative [Ricinus communis] Length = 535 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 176/515 (34%), Positives = 265/515 (51%), Gaps = 52/515 (10%) Query: 1 MGLFIKLIGVAHMVSQIVDQCI-VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNS 58 M F+ L A + +D I V R + ++YGCQMN+ D + + GY E V+ Sbjct: 1 MFSFVLLSRTAQALEVPLDTEIPVRGRIYHETYGCQMNINDMEIVLSIMKDAGYREVVDV 60 Query: 59 MDDADLIVLNTCHIREKAAEKVYS------FLGR--IRNLKNSRIKEGGDLLVVVAGCVA 110 + A++I +NTC IR+ A +KV+ FL R N+ R + VVV GC+A Sbjct: 61 PESAEIIFINTCAIRDNAEQKVWQRLNYFWFLKRHWKSNVTIGRSQSLSPPKVVVLGCMA 120 Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170 + ++IL +V+VV GP Y LP LLE +G++ ++T S+E+ + + V Sbjct: 121 ERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADICPVRIS- 179 Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 K +TAF+++ GC+ C+FC+VP+TRG E SR + +V E +L GV E+TLLGQ Sbjct: 180 --KNSITAFVSVMRGCNNMCSFCIVPFTRGRERSRPVDSIVKEVAELWKEGVKEVTLLGQ 237 Query: 231 NVNAWR-GKGLDGE---------------KCT-------FSDLLYSLSEIKGLVRLRYTT 267 NVN++ G++ E C FSDLL LS +R RYT+ Sbjct: 238 NVNSYNDASGVENEVEPGSNWKLSEGFSSMCKVKKMGLRFSDLLDRLSTEFPEMRFRYTS 297 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 HP+D D L+ D + +HLP QSGS +L+ M R +T Y ++ +IR + P Sbjct: 298 PHPKDFPDDLLYVMRDKYNICKSIHLPAQSGSSTVLERMRRGYTREAYLDLVQKIRRIMP 357 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENV 386 D+ I+SDFI GF GET++D +T+ LV +GY A+ F YS R T N + V +NV Sbjct: 358 DVGITSDFICGFCGETEEDHESTLSLVRTVGYDMAYMFAYSMREKTHAHRNYNDDVPDNV 417 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRS------------ 432 K RL L + R D+ +G I VL+E K +L+G++ Sbjct: 418 KQRRLTELIEAFRGSTGQCYDSQIGSIQLVLVEGPNKRAPDTELIGKTDRGHRVSFINLA 477 Query: 433 -PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 P +N +N +GD ++VRI ++L+GE Sbjct: 478 VPNRSEGFINKRNPVVGDYVEVRILKSTRASLFGE 512 >gi|311747597|ref|ZP_07721382.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Algoriphagus sp. PR1] gi|126575579|gb|EAZ79889.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Algoriphagus sp. PR1] Length = 492 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 157/460 (34%), Positives = 254/460 (55%), Gaps = 23/460 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + G++ + + AD+I LNTC IREKA V L Sbjct: 33 RKLYIESYGCQMNFSDSEIVASIMKENGFDTTSDFNQADVIFLNTCSIREKAELTVRKRL 92 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 K ++ ++ + V GC+A+ +++L IV+VVVGP Y LP L+ A Sbjct: 93 TDFNKAKRNK----PEMTIGVLGCMAERLKDKLLEEEKIVDVVVGPDAYRDLPNLVSSAE 148 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + V+T S E+ + ++ V N GVTAF++I GCD C+FCVVP+TRG E S Sbjct: 149 DGNKGVNTFLSREETYADIAPVRLNSN---GVTAFISIMRGCDNMCSFCVVPFTRGRERS 205 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-------------TFSDLL 251 R +V EA+ L G E+TLLGQNV++++ + K F++LL Sbjct: 206 RDPHSIVAEAQDLYAKGYKEVTLLGQNVDSYKWSPEENNKARLNKKEEAVSSVINFANLL 265 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++++ +R+R++TSHP+D++D ++ D + Y+HLPVQSG+ R+L MNR + Sbjct: 266 EMVAQVSPTLRVRFSTSHPKDITDEVLYTMKKYDNICKYIHLPVQSGNSRVLDLMNRTYD 325 Query: 312 AYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 Y ++ IR++ D ISSD I GF ET+++ + T+ L+D + Y ++ F YS R Sbjct: 326 REWYLNRVESIRNILGDECGISSDMIAGFCSETEEEHQDTLTLMDIVKYDFSYMFFYSER 385 Query: 371 LGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-L 428 GT + E + VK RL + K + N +G+ +LIE K+ + Sbjct: 386 PGTLAAKKYEDDIPLEVKKRRLAEIISKQSKLSHERNKLDIGKEQVILIEGISKKSDQEY 445 Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 GR+ + V++ S ++ IGD + V+I D +TL+G+++ Sbjct: 446 RGRNSANKVVIIPSGDYGIGDYVLVKIKDCTPATLFGDIL 485 >gi|323449468|gb|EGB05356.1| hypothetical protein AURANDRAFT_31065 [Aureococcus anophagefferens] Length = 540 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 171/483 (35%), Positives = 250/483 (51%), Gaps = 53/483 (10%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF+++ GCQMNV DS + + GY S AD+++LNTC IR+KA KV++ R Sbjct: 39 FFIETRGCQMNVSDSEVVRSLLLDGGYGEATSAAAADVVLLNTCAIRDKAEAKVWT---R 95 Query: 87 IRNLKNSRIKEGGDL--------LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 +R+L+ R G L V V GC+A+ EE L + + +VVVGP Y LP Sbjct: 96 LRDLRG-RAPHGVKLAAHRRPRQTVAVLGCMAE-RVEEGLFENGLADVVVGPDAYRELPR 153 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 LL G ++ DT S+ + + + + G AF+++Q GC+ C +C+VPYT Sbjct: 154 LLGNVGSGPQM-DTKLSLVEDYGEVFPTRADPTMRHG--AFVSVQRGCNNACAYCIVPYT 210 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN---------AW-------------- 235 RG E SR+++ V+DE L D GV EITLLGQNVN AW Sbjct: 211 RGRERSRAVTTVLDEVAALYDAGVREITLLGQNVNSYHDAKTASAWGLPREYSDGFVPFV 270 Query: 236 RGKGLDG--EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293 + DG + F++LL +++E R+R+T+ HP+D D L++A D + LHL Sbjct: 271 KSAKRDGMADGVRFAELLVAVAEAAPDARIRFTSPHPKDFPDALLRAVADTPNVAKQLHL 330 Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 P QSGSD +L+SM R +T YR ++DR R P +A+SSDFI GF GE++ D AT+ L Sbjct: 331 PAQSGSDAVLRSMRRGYTDDAYRALVDRARQTIPGVALSSDFIAGFCGESEADHDATVAL 390 Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412 ++ I Y AF F YS R TP L + V +VK RL + R + + VG+ Sbjct: 391 IEDIRYDMAFLFAYSSRDRTPAQRRLDDDVPADVKNRRLNEIIAAFRAGRDELSHEAVGE 450 Query: 413 IIEVLIE------KHGKEKGKLVGRSPWLQSVVL-----NSKNHNIGDIIKVRITDVKIS 461 VL+E G + + GR+ + +V + GD V + V+ + Sbjct: 451 THLVLVEGAPKRAPAGADGTFVTGRNDGYRKIVFPDALPDGTALAEGDFCHVYVDRVEGA 510 Query: 462 TLY 464 TL+ Sbjct: 511 TLF 513 >gi|227538855|ref|ZP_03968904.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC 33300] gi|227241364|gb|EEI91379.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC 33300] Length = 478 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 153/453 (33%), Positives = 254/453 (56%), Gaps = 16/453 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + +G+E ++AD++ +NTC IRE A +V + Sbjct: 32 RKLYIESYGCQMNFSDSEIVASILMDKGFETTKDFNEADVVFINTCSIRENAETRVRN-- 89 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R++ + ++ K G ++V V GC+A+ + L +V+VVVGP Y LP L+E+ Sbjct: 90 -RLKEFEFAKSKNPG-MIVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRDLPNLIEQVD 147 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + V+ S E+ + ++ V N G+TAF++I GCD C+FCVVP+TRG E S Sbjct: 148 DGAKAVNVLLSREETYADINPVRLNTN---GITAFISIMRGCDNMCSFCVVPFTRGRERS 204 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG------LDGEKCTFSDLLYSLSEIK 258 R + ++ EA+ L + G E+TLLGQNV++++ E F+ LL ++++ Sbjct: 205 RDVDSIIKEAQDLFNAGYREVTLLGQNVDSYKFTAPVAEGESPAEPVNFAQLLAKVADVS 264 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L+R+R++TSHP+D++D ++ + + Y+HLPVQSG+ R+L+ MNR + Y Sbjct: 265 PLLRVRFSTSHPKDITDEVLHTMARYENICNYIHLPVQSGNSRVLELMNRTYDRAWYIDR 324 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +D IR + P+ IS+D I GF ET+++ + T+ ++D + Y A+ F YS R GT + Sbjct: 325 VDAIRRILPECGISTDVITGFCTETEEEHQETLSMMDYVKYDYAYMFAYSERPGTLAAKR 384 Query: 379 LE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQ 436 E + E +K RL + K R VG++ ++LIE + K + GR+ Sbjct: 385 YEDDIPEEIKKRRLTEVVAKQRLHSHYRIQNFVGKVHKILIEGYSKRSDQDFAGRNDQNA 444 Query: 437 SVVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468 VV N + +GD + V +TL G +V Sbjct: 445 MVVFPVDNRYKVGDYVNVIGESCTSATLLGRIV 477 >gi|332248854|ref|XP_003273580.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 1 [Nomascus leucogenys] Length = 623 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 155/479 (32%), Positives = 261/479 (54%), Gaps = 38/479 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREKA + +++ L Sbjct: 136 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 195 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y LP+LL A Sbjct: 196 HQLKALKTRRPRSRVPLKIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPQLLAVAE 255 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ + S+++ + + V + +AF++I GCD C++C+VP+TRG E S Sbjct: 256 SGQQAANVLLSLDETYADVMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 312 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDGEKCT--- 246 R ++ +++E +KL + G+ E+TLLGQNVN++R +G T Sbjct: 313 RPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAVPTNLSRGFTTNYKTKQG 372 Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 F+ LL +S + +R+R+T+ HP+D D +++ + D + +HLP QSGS R+L Sbjct: 373 GLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVL 432 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 ++M R ++ Y +++ IR P +++SSDFI GF GET++D T+ L+ ++ Y F Sbjct: 433 EAMWRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNIGF 492 Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 F YS R T + L + V E VK RL L RE+ N VG VL+E Sbjct: 493 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANQTSVGCTQLVLVEGLS 552 Query: 423 KEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKISTLYGELV 468 K L GR+ L+ + +++ ++ GD + V+IT TL G ++ Sbjct: 553 KRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 611 >gi|326430372|gb|EGD75942.1| CDK5 regulatory subunit-associated protein 1 [Salpingoeca sp. ATCC 50818] Length = 632 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 154/433 (35%), Positives = 239/433 (55%), Gaps = 31/433 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R +++YGCQMNV DS + G E+ +++AD+++L TC IRE A KV++ L Sbjct: 123 KRVLIQTYGCQMNVNDSELAWSILKEAGCEKATDVEEADIVLLVTCAIRENAETKVWTKL 182 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ ++K R K DL + V GC+A+ +++ S V++V GP Y LP +L RA Sbjct: 183 DQLSHIKRKRPKHK-DLQIGVLGCMAERLKHKLVEESKCVDIVAGPDAYRELPTMLSRAA 241 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G V+ S+E+ + L+ V N +AF++IQ GCD C++C+VP+TRG E S Sbjct: 242 AGDTQVNVLLSLEETYADLTPVRHNPN---SPSAFVSIQRGCDNMCSYCIVPFTRGRERS 298 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----------------------RGKGLD 241 R +S ++ E ++L + GV E+TLLGQNVN++ + D Sbjct: 299 RPVSAILREVQQLSEQGVKEVTLLGQNVNSYLDHSQISVATAAPVVNTPGFKTIYKRKKD 358 Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301 G TF+ LL ++++ +R+R+T+ HP+D D ++ D + +HLP QSGSD Sbjct: 359 G--ITFAQLLEQVAQVDPEMRIRFTSPHPKDFPDEVLHVIRDHHNVCNQIHLPAQSGSDA 416 Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361 +L M R +T Y +++DRI + PD+ +SSDFI GF GET+ D T+ L++ + Y Sbjct: 417 VLDRMRRGYTHAAYCELVDRIHDLIPDVTLSSDFISGFCGETEADHLDTLRLLEYVKYDM 476 Query: 362 AFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 A+ F YS R T L+ V E+VK RL L + + + N G + VLIE Sbjct: 477 AYLFAYSLREKTHAHRRLQDDVPEDVKLARLNDLIQLFHKHAKNNNAQRHGSVQTVLIES 536 Query: 421 HGK-EKGKLVGRS 432 K + +LVGRS Sbjct: 537 ASKRSEDELVGRS 549 >gi|15806170|ref|NP_294874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Deinococcus radiodurans R1] gi|81624877|sp|Q9RV79|MIAB_DEIRA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|6458887|gb|AAF10722.1|AE001964_6 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 505 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 158/444 (35%), Positives = 248/444 (55%), Gaps = 24/444 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMN YD+ ++ S G + V S D+AD +++NTC +R K +KV S LG +R Sbjct: 53 TYGCQMNEYDTHLVQSQLVSFGADIVESPDEADFVLVNTCAVRGKPVDKVRSLLGDLRKQ 112 Query: 91 KNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGKR 148 K R L+V + GC+AQ EG++I R+ V+V++GP + + LE RF Sbjct: 113 KAQR-----SLVVGMMGCLAQLEEGQQIARKFE-VDVLLGPGSLLDIGAALESNERF--- 163 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ K E + + K + A LTI GCD CT+C+VP TRG ++SR Sbjct: 164 -----WGLQFKDELHDHIPPPPSGK--LQAHLTIMRGCDHHCTYCIVPTTRGPQVSRHPD 216 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ E + GV E+TLLGQNVNA+ +G L G +F+DLL + G+ R+++ Sbjct: 217 DILRELDMQLAAGVREVTLLGQNVNAYGVDQGAKLKGYP-SFADLLRMVG-ASGIERVKF 274 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TTSHP + ++ + A G+ + ++HLPVQSGSDR+L+ M R + +Y I +I+ Sbjct: 275 TTSHPMNFTEDVAAAIGETPAICEFVHLPVQSGSDRVLRRMAREYNREKYLTHIAQIKKH 334 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD+ +++D IVGFPGET++DF+ T+ L D++GY A+ F YSPR GTP + + Sbjct: 335 IPDVVLATDIIVGFPGETEEDFQDTLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQDLPRE 394 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ-SVVLNSKN 444 +K ERL L + ++ N VG + +VL+ + G L G + +VV + Sbjct: 395 LKTERLQRLIARQKDWSARKNAQKVGTVQQVLLRGDAHDAGFLEGHTRGNHPTVVPKAIG 454 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 + + +VRI +YG ++ Sbjct: 455 ADGAGVYQVRIDHATPHMMYGHIL 478 >gi|26554249|ref|NP_758183.1| hypothetical protein MYPE7940 [Mycoplasma penetrans HF-2] gi|81747516|sp|Q8EUX4|MIAB_MYCPE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|26454258|dbj|BAC44587.1| conserved hypothetical protein [Mycoplasma penetrans HF-2] Length = 491 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 152/448 (33%), Positives = 254/448 (56%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + +K++GCQ N+ D+ M M GYE ++ +DL++LNTC +RE A KV++ + Sbjct: 54 KTYHIKTFGCQSNLRDTEVMMGMLELIGYEYNEDVNTSDLVLLNTCAVREHAESKVFADI 113 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G + +K K + + V GC+AQ E IL+ + V+ + G +R+ LLE+ Sbjct: 114 GILDRIK----KSNPNFIFGVCGCMAQEEAVVNRILKSNFNVDFIFGTHNVHRILNLLEQ 169 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 F K +V +S E I + R + F+ + GCDKFCT+C+VP TRG Sbjct: 170 VIFEKNLVVEVWSHEGNV----IENLPSKRTNNLKGFVNVMYGCDKFCTYCIVPMTRGKI 225 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR ++DE ++I G E+TL+GQNVN++ +GE F++LL +++ G+ R Sbjct: 226 RSRRKEDILDEVHQMISEGYKEVTLIGQNVNSYGIDFDNGENYLFNNLLEDVAKT-GIER 284 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTS+P + + ++ +MP++HLP+QSG + ILK MNR +Y ++D I Sbjct: 285 VRFTTSNPWNFTRSIVDTMKKYPNIMPHIHLPIQSGDETILKKMNRPMKIGDYIDLVDYI 344 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P+ +I++D IVGFP ET + F T++L +I + AF+F YS R GT + + +++ Sbjct: 345 RANIPNCSITTDLIVGFPNETKEQFNKTLELYKRIEFDNAFTFIYSKRDGTVAAIIPDEI 404 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP-WLQSVVL 440 + K ERL L + ++ N+ V ++++VL++ K+K + G SP W VV Sbjct: 405 PLSEKKERLQELNEMVKTFSKKNNEKYVNKVLDVLVDGPSKKDKTVISGYSPQW--KVVN 462 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + G+I+KV IT TL G+++ Sbjct: 463 FTGSAKSGEIVKVLITSASRFTLNGKMI 490 >gi|218132529|ref|ZP_03461333.1| hypothetical protein BACPEC_00388 [Bacteroides pectinophilus ATCC 43243] gi|217992639|gb|EEC58641.1| hypothetical protein BACPEC_00388 [Bacteroides pectinophilus ATCC 43243] Length = 484 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 170/449 (37%), Positives = 255/449 (56%), Gaps = 28/449 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + ++GCQMN DS ++ + GY +S ++AD ++ NTC +RE A KVY LG + Sbjct: 51 IATFGCQMNARDSEKLMGILEQIGYVAADS-ENADFVLYNTCTVRENANLKVYGRLGHLG 109 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +K S D+++ + GC+ Q E+I + V+VV G Y+L ELL +RF Sbjct: 110 AVKRS----NPDMMIGMCGCMMQEPDVVEKIRKSYRFVDVVFGTHNIYKLAELL-VSRFE 164 Query: 147 KRVV------DTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + DTD VE+ ER ++ K+GV I GC+ FC++C+VPY R Sbjct: 165 SEGMIIDIWKDTDKIVEELPNERR------FSFKQGVN----ITFGCNNFCSYCIVPYVR 214 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR ++ E L+ +GV E+ LLGQNVN++ G+ L+ TF+ LL + +I G Sbjct: 215 GRERSREPKDIIREIESLVADGVVEVMLLGQNVNSY-GRSLET-PVTFAQLLQEIEKIDG 272 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+ T HP+D+SD LI+ + + ++HLP+QSGS RILK MNR +T Y +++ Sbjct: 273 LERIRFMTPHPKDLSDELIEVMKNSKKICNHVHLPLQSGSSRILKLMNRHYTKEHYLELV 332 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++IR PD++I++D IVGFP ET++DF TMD+V+K Y A++F YS R GTP ++M Sbjct: 333 EKIRREIPDVSITTDIIVGFPQETEEDFLETMDVVEKAQYESAYTFIYSKRTGTPAASMD 392 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSV 438 QV E+V +R L +KL D V I +VL+E LV GR V Sbjct: 393 GQVPEDVVKDRFDRLLEKLSGISAKHIDKYVDTIQDVLVESVNDHDSSLVTGRMRNNTLV 452 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ +G I+ V +T+ K +GEL Sbjct: 453 HFPGESGLVGKIVNVHLTEGKGFYYFGEL 481 >gi|146296852|ref|YP_001180623.1| RNA modification protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410428|gb|ABP67432.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 434 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 150/440 (34%), Positives = 261/440 (59%), Gaps = 19/440 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ + + F GYE V+ +AD+ V+NTC + + K + R + Sbjct: 9 GCKVNQYETQAIAETFERLGYEIVDFDQEADIYVINTCTVTNVSDRKSRQAIKRAK---- 64 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRV-- 149 K D +VVV GC Q +E+ ++ V+++VG + ++ E + E + K++ Sbjct: 65 ---KTSPDSIVVVMGCYPQVYPQEV-QKIEGVDIIVGTRDREKIVEYVTEYLKQKKKILA 120 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 V+ +Y D FE L I +N + AF+ I+EGC++FC++C++PY RG +SRSLS Sbjct: 121 VNNEYK-RDTFEELKI--SSFNER--TRAFIKIEEGCEQFCSYCIIPYARGSVVSRSLSS 175 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 ++DE ++L NG E + G N++A+ GK LD K T D++ +S+I+ + R+R ++ Sbjct: 176 ILDEVQRLASNGYKEFVITGINISAY-GKDLDY-KVTLVDVIEEISKIEKVRRIRLSSLE 233 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P M + IK ++ L +LHL +QSGSD+ILK MNR +T EYRQI++ +R D+ Sbjct: 234 PIVMKEDFIKRLVKIEKLCHHLHLSLQSGSDKILKLMNRHYTTDEYRQIVEMVRGYWNDV 293 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 A ++D IVGFPGE+D+DF T++ V +IG+++ F++SP+ GT NM QV+ K + Sbjct: 294 AFTTDIIVGFPGESDEDFERTVEFVKEIGFSRIHVFRFSPKKGTNAYNMPYQVNSAEKEK 353 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNIG 448 R L+ R+ F+ G+I++VLIE++ +G G S +++++V +++ +G Sbjct: 354 RSEILKSVARKLSFGFHKKFEGKIVDVLIEENSSLEGYFEGYSGNYIRTLVPKTESIRVG 413 Query: 449 DIIKVRITDVKISTLYGELV 468 +I KV++ + + G+++ Sbjct: 414 EIYKVKVKEAFEQYVIGDII 433 >gi|312135098|ref|YP_004002436.1| RNA modification enzyme, miab family [Caldicellulosiruptor owensensis OL] gi|311775149|gb|ADQ04636.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor owensensis OL] Length = 434 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 156/441 (35%), Positives = 252/441 (57%), Gaps = 21/441 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ + ++F G+E V+ AD+ V+NTC + + K + + + L Sbjct: 9 GCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNMSDRKSRQAIKKAKKLSP 68 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRVVD 151 I VVV GC Q E+ + I ++++G + ++ + + E K++V Sbjct: 69 ESI-------VVVMGCYPQVYPHEVEKIRDI-DIIIGTKDRQKIVDYVKEYLENKKKIVA 120 Query: 152 TDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D + FE L I + +N + AF+ I+EGCD+FC++C++PY RG SRSL + Sbjct: 121 IDEGYKRGTFEELKISE--FNERS--RAFIKIEEGCDQFCSYCIIPYARGAVRSRSLESI 176 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 +E R+L+ NG E + G N++A+ GK LDG K T D++ ++EI+G+ R+R ++ P Sbjct: 177 EEEVRRLVSNGYKEFVITGINISAY-GKDLDG-KITLIDVIERINEIEGVKRIRLSSLEP 234 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 MS+ I D L +LHL +QSGSD+ILK MNR +T +Y+ I+DRI+ D+A Sbjct: 235 LIMSEQFISRLLSFDKLCHHLHLSLQSGSDKILKFMNRHYTTAQYQDIVDRIKEKWDDVA 294 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 ++D IVGFPGET++DF AT++ V KIG+++ F++SP+ GT +M QVD K R Sbjct: 295 FTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYDMPNQVDSKEKERR 354 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNI-- 447 +++ F+ VG+ +EVLIE+ G G S ++++VV KNH I Sbjct: 355 SKVMKEVAANLSYQFHRKFVGKWLEVLIEQDSDFDGYYEGYSGNYIRTVV--RKNHFIVP 412 Query: 448 GDIIKVRITDVKISTLYGELV 468 G+I KV+IT + GE++ Sbjct: 413 GEIYKVKITQAYEQYVKGEII 433 >gi|42525235|gb|AAS18317.1| CDK5 regulatory subunit associated protein 1 transcript variant 3 [Homo sapiens] Length = 574 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 149/440 (33%), Positives = 245/440 (55%), Gaps = 27/440 (6%) Query: 17 IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 ++D+ + QR ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREK Sbjct: 91 MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A + +++ L +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 LP LL A G++ + S+++ + + V + +AF++I GCD C++C+V Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240 P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R +G Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 327 Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 T F+ LL +S + +R+R+T+ HP+D D +++ + D + +HLP Sbjct: 328 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 387 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 QSGS R+L++M R ++ Y +++ IR P +++SSDFI GF GET++D T+ L+ Sbjct: 388 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 447 Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413 ++ Y F F YS R T + L + V E VK RL L RE+ N VG Sbjct: 448 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCT 507 Query: 414 IEVLIEKHGKEKGK-LVGRS 432 VL+E K L GR+ Sbjct: 508 QLVLVEGLSKRSATDLCGRN 527 >gi|291543948|emb|CBL17057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus sp. 18P13] Length = 455 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 158/451 (35%), Positives = 246/451 (54%), Gaps = 28/451 (6%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 V+S+GCQ+N+ D +++ + S GY + ADLI+LNTC +RE A ++V+ LG++ Sbjct: 22 MVQSFGCQLNMTDGEKLKWLLLSMGYGLTEEPEQADLILLNTCAVREHAEDRVFGHLGQL 81 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + K + L++ + GC+ E E++ P VN+VVG RLP +L Sbjct: 82 KPYKQKK----PGLIIGLCGCMTAEEPVREKLKASYPYVNLVVGTGALERLPAMLLEILG 137 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 GK+ +SV+ + + R A + I GC+ FCT+C+VPY RG E SR Sbjct: 138 GKK-----HSVDATVQSAPSEELSQVRSCSFKASVPIMYGCNNFCTYCIVPYVRGRERSR 192 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLR 264 + + R+L+ G EI LLGQNVN++ GK L DG + F +LL L I+G +R Sbjct: 193 DPKIIERQVRELVSQGCKEIFLLGQNVNSY-GKDLPDGIR--FPELLRRLDAIEGEYWIR 249 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + +SHP+D + LI + + +LHLPVQSGSD IL +MNR +T +Y + + RS Sbjct: 250 FMSSHPKDATPELIDVICNSRHVEKHLHLPVQSGSDSILHAMNRCYTVKKYLETVRYARS 309 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD A+++D IVGFP ETD++F AT+ L++++G+ +SF YSPR GT + + + Sbjct: 310 RVPDFALTTDIIVGFPNETDEEFSATLGLLEQVGFDNVYSFIYSPRSGTKAAQIADHTPA 369 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL-----QSVV 439 VK R+ L + RE +G+ ++VL E + KG+ PWL + V+ Sbjct: 370 QVKTVRMQQLLAQQRETSTRLYRRFLGRTMQVLFEGVSR-KGE-----PWLTGKSTEGVI 423 Query: 440 LNSKN--HNIGDIIKVRITDVKISTLYGELV 468 + +K IG V I + K + G ++ Sbjct: 424 VEAKGDPSRIGTFADVHIEETKNWAVLGTIL 454 >gi|332858143|ref|XP_001155512.2| PREDICTED: CDK5 regulatory subunit-associated protein 1 [Pan troglodytes] Length = 587 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 154/479 (32%), Positives = 259/479 (54%), Gaps = 38/479 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV D+ + GY R +++ +AD+I+L TC +REKA + +++ L Sbjct: 100 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSVREKAEQTIWNRL 159 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y LP LL A Sbjct: 160 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 219 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ + S+++ + + V + +AF++I GCD C++C+VP+TRG E S Sbjct: 220 SGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 276 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA-WR--------------GKGLDGEKCT--- 246 R ++ +++E +KL + G+ E+TLLGQNVN+ W +G T Sbjct: 277 RPIASILEEVKKLSEQGLKEVTLLGQNVNSFWDNSEVQFNNAVPTNLSRGFTTNYKTKQG 336 Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 F+ LL +S + +R+R+T+ HP+D D +++ + D + +HLP QSGS R+L Sbjct: 337 GLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVL 396 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 ++M R ++ Y +++ IR P +++SSDFI GF GET++D T+ L+ ++ Y F Sbjct: 397 EAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGF 456 Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 F YS R T + L + V E VK RL L RE+ N VG VL+E Sbjct: 457 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLS 516 Query: 423 KEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKISTLYGELV 468 K L GR+ L+ + +++ ++ GD + V+IT TL G ++ Sbjct: 517 KRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 575 >gi|195107983|ref|XP_001998572.1| GI23564 [Drosophila mojavensis] gi|193915166|gb|EDW14033.1| GI23564 [Drosophila mojavensis] Length = 588 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 155/476 (32%), Positives = 248/476 (52%), Gaps = 38/476 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + YGCQMN D+ + + GY+R + ++D+++L TC +RE A +K+++ L Sbjct: 101 RRVHFEVYGCQMNTNDTEVVWSILKEHGYQRSEDVANSDVVMLVTCAVREGAEQKIWNRL 160 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +R LK R + L + + GC+A+ E++L + V+V+ GP +Y LP LL AR Sbjct: 161 RHLRALKEKRGSKRAPLQLTILGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAVAR 220 Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +G ++ S+++ + + V TAF++I GCD CT+C+VP+TRG E Sbjct: 221 HYGNSAINVLLSLDETYADVMPVRLN---SHSPTAFVSIMRGCDNMCTYCIVPFTRGRER 277 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK------------------- 244 SR L +V E R L + GV E+TLLGQNVN++R + + Sbjct: 278 SRPLDSIVHEVRTLQEQGVKEVTLLGQNVNSYRDRTSENSTKAAGNTAPGFSTVYKPKTG 337 Query: 245 -CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 FS LL S++E +R+R+T+ HP+D SD +++ D + LHLP QSG+ +L Sbjct: 338 GLPFSVLLQSVAEAVPEMRIRFTSPHPKDFSDEVLRVIRDYPNVCKQLHLPAQSGNSAVL 397 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 M R +T Y Q+++ IR + P++ +SSDFI GF GET+ +F T+ L++ + Y AF Sbjct: 398 ARMRRGYTREAYLQLVEHIRQILPNVGLSSDFICGFCGETEAEFEDTISLIEIVQYNVAF 457 Query: 364 SFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KH 421 F YS R T ++ V VK +RL + + RE + GQ +LIE K Sbjct: 458 LFAYSMREKTTAHRRCVDDVPTAVKTDRLKRMVQAFREGATKLHKRFEGQEQLILIEGKS 517 Query: 422 GKEKGKLVGRSPWLQSVVL------------NSKNHNIGDIIKVRITDVKISTLYG 465 + GR+ V++ ++K+ N+GD + RI + L G Sbjct: 518 KRSDSHWFGRNDANIKVIVPAAALRTANANESAKDINVGDFVVARIVESNSQVLKG 573 >gi|26353536|dbj|BAC40398.1| unnamed protein product [Mus musculus] Length = 588 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 157/479 (32%), Positives = 255/479 (53%), Gaps = 38/479 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREKA + +++ L Sbjct: 99 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 158 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++ LK R + L + + GC+A+ EIL R +V+++ GP Y LP LL Sbjct: 159 HQLKVLKTKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVE 218 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ + S+++ + + V + +AF++I GCD C++C+VP+TRG E S Sbjct: 219 SGQQAANVLLSLDETYADIMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 275 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDGE------ 243 R ++ ++DE RKL + G+ E+TLLGQNVN++R +G Sbjct: 276 RPVASILDEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAGSANLSRGFTTNYKPKQG 335 Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 FS LL +S I +R+R+T+ HP+D D +++ + + +HLP QSGS R+L Sbjct: 336 GLRFSHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVL 395 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 +M R ++ Y ++ +R P +++SSDFI GF GET+DD R T+ L+ ++ Y F Sbjct: 396 DAMRRGYSREAYVALVHHVRETIPGVSLSSDFITGFCGETEDDHRQTVSLLREVQYNTGF 455 Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 F YS R T + L + V E VK RL L RE+ N VG VL+E Sbjct: 456 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEASKANKTSVGYSQLVLVEGFS 515 Query: 423 KEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKISTLYGELV 468 K L GR+ L+ + +++ +I GD + V+IT TL G ++ Sbjct: 516 KRSTTDLCGRNDANLKVIFPDAEVEDITNPGLKVRAQPGDYVLVKITSASSQTLKGHIL 574 >gi|313674871|ref|YP_004052867.1| tRNA-i(6)a37 thiotransferase enzyme miab [Marivirga tractuosa DSM 4126] gi|312941569|gb|ADR20759.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Marivirga tractuosa DSM 4126] Length = 488 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 155/461 (33%), Positives = 252/461 (54%), Gaps = 24/461 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGCQMN DS + + G++ N ++AD+I LNTC IREKA V L Sbjct: 35 RKLYIESYGCQMNFSDSEIVTSIMKENGFDTTNDFNNADVIFLNTCSIREKAELTVRKRL 94 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +K + ++ + V GC+A+ ++L IV++V GP +Y LP L++ Sbjct: 95 TDFNKVKARK----PEMQIGVLGCMAERLKTKLLEEEKIVDIVAGPDSYRDLPNLVKTVD 150 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ V+T S E+ + +S V N GVTAF++I GCD C+FCVVP+TRG E S Sbjct: 151 DGEKAVNTFLSREETYADISPVRLNSN---GVTAFISIMRGCDNMCSFCVVPFTRGRERS 207 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC--------------TFSDL 250 R +V EA+ L D G E+TLLGQNV++++ K F++L Sbjct: 208 RDPFSIVQEAQDLFDKGYREVTLLGQNVDSYKWSEEINNKARLEKIEKKEEVEVINFANL 267 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 + ++ + +R+R++TSHP+D++D ++ + + Y+HLP QSG+ RILK MNR + Sbjct: 268 IEMVANVSPDLRVRFSTSHPKDITDEVLHTMKKYENICKYIHLPAQSGNSRILKMMNRTY 327 Query: 311 TAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 Y +D IR++ + ISSD I GF ET+++ + T+ L+D + Y ++ F YS Sbjct: 328 DRDWYINRVDAIRNILGEECGISSDMIAGFCSETEEEHQDTLTLMDYVKYDFSYMFFYSE 387 Query: 370 RLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGK 427 R GT E + K +RL + K RE + N + ++ +VL+E K + + Sbjct: 388 RPGTLAEKRYEDDIPLETKKKRLQEIINKQREYSLERNQLDLNKVHKVLVEGTSKRSEEQ 447 Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 L GR+ + V+ +N+ GD + V + + +TL G+ V Sbjct: 448 LQGRNTANKVVIFPKENYKKGDYVDVFVEECTGATLIGKAV 488 >gi|224078161|ref|XP_002192492.1| PREDICTED: CDK5 regulatory subunit associated protein 1 [Taeniopygia guttata] Length = 593 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 164/480 (34%), Positives = 251/480 (52%), Gaps = 38/480 (7%) Query: 21 CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 C V ++++YGCQMNV D+ + + GY R +++AD+++L TC +REKA V Sbjct: 102 CRVKGSLYLETYGCQMNVSDTEIVWAILQKNGYARTKELEEADVVLLVTCSVREKAEHAV 161 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 ++ L +R LK R + L V + GC+A+ EEIL + +V+VV GP Y LP LL Sbjct: 162 WNRLRHLRALKARRPRARAPLRVGILGCMAERLKEEILHKEKLVDVVAGPDAYRDLPRLL 221 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 A G++ + S+++ + + V G TAF++I GCD C++C+VP+TRG Sbjct: 222 AVAESGQQAANVLLSLDETYADILPVQTSAG---GTTAFVSIMRGCDNMCSYCIVPFTRG 278 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-----------GKGLDGEKCT--- 246 E SR ++ ++ E R L D GV E+TLLGQNVN++R GL T Sbjct: 279 RERSRPIASILQEVRMLSDQGVKEVTLLGQNVNSFRDLSEVQFQSVTAPGLSRGFRTVYK 338 Query: 247 -------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 FS LL +S I +R+R+T+ HP+D D +++ + + +LHLP QSGS Sbjct: 339 AKQGGLRFSHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIQERHNICKHLHLPAQSGS 398 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 R+L++M R +T Y +++ +R P +++SSDFI GF GET++D T+ L+ ++ Y Sbjct: 399 TRVLEAMRRGYTREAYLELVHHVRDSIPGVSLSSDFIAGFCGETEEDHLQTVSLLREVRY 458 Query: 360 AQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 F F YS R T + L+ V +VK +RL L RE+ N VG+ VL+ Sbjct: 459 NVGFLFAYSMRQKTRAHHRLQDDVPADVKKQRLEQLIATFREEAARANAELVGRAQLVLV 518 Query: 419 EKHGKEKG-KLVGRSPWLQSVVLNSKN------------HNIGDIIKVRITDVKISTLYG 465 E K +L GR+ V+ GD + V++T TL G Sbjct: 519 EGPSKRSASELCGRNDGNIKVIFPDTELEDAAERKAPGRAQPGDYVMVKVTSASSQTLRG 578 >gi|205355334|ref|ZP_03222105.1| hypothetical protein Cj8421_0457 [Campylobacter jejuni subsp. jejuni CG8421] gi|205346568|gb|EDZ33200.1| hypothetical protein Cj8421_0457 [Campylobacter jejuni subsp. jejuni CG8421] Length = 419 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 157/436 (36%), Positives = 238/436 (54%), Gaps = 20/436 (4%) Query: 36 MNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MNV DS M ++ + Y + +ADLI++NTC +REK K++S +G +K Sbjct: 1 MNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSEVGGFEKVK--- 57 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154 KEG + V GC A G EI +R+P V+ V+G + ++ + ++ +F VD DY Sbjct: 58 -KEGAK--IGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTPKFMG--VDIDY 112 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 E +F + Y +++ I GCDK CT+C+VP+TRG EIS + + EA Sbjct: 113 D-ESEFAFADFRNSIYK------SYINISIGCDKHCTYCIVPHTRGDEISIPFNIIYKEA 165 Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 +K ++ G EI LLGQNVN + GK E K FSDLL LS I+ L R+R+T+ HP Sbjct: 166 QKAVEKGAKEIFLLGQNVNNY-GKRFRNEHKKMDFSDLLEELSTIEDLERIRFTSPHPLH 224 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 M D ++ + + +H+P+QSGS ILK+M R +T Y ++R + P+++IS Sbjct: 225 MDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALKLRELCPNVSIS 284 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 +D IV FPGE++ DF TMD+++K+ + Q FSFKYS R T + M Q+DE + RL Sbjct: 285 TDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATMPNQIDEETASRRLS 344 Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ + E + +VL E+ + + GR+ V + +G + Sbjct: 345 TLQNRHSEILDEIVKKQENKTFKVLFEEL-RAGNSIAGRTDNNFLVQVEGSEELLGQFKE 403 Query: 453 VRITDVKISTLYGELV 468 V+IT+ K LYGE+V Sbjct: 404 VKITNAKRMVLYGEVV 419 >gi|302670851|ref|YP_003830811.1| tRNA-thiotransferase enzyme MiaB [Butyrivibrio proteoclasticus B316] gi|302395324|gb|ADL34229.1| tRNA-thiotransferase enzyme MiaB [Butyrivibrio proteoclasticus B316] Length = 484 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 157/446 (35%), Positives = 243/446 (54%), Gaps = 16/446 (3%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GCQMN DS ++ + GYE S ++AD ++ NTC +R+ A ++VY LG Sbjct: 49 VVTFGCQMNARDSEKLLAILRLVGYEESES-ENADFVIYNTCTVRDNADQRVYGRLGACS 107 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 N K K+ + + + GC+ Q + E+I + V+++ G Y+ ELL Sbjct: 108 NFK----KKNPHMKIALCGCMMQEQTVIEKIKKSYRFVDLIFGTHNIYKFAELLCTCLES 163 Query: 147 KRVVDTDYSVEDKF-ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 R++ + DK E L ++ RK + + I GC+ FCT+C+VPY RG E SR Sbjct: 164 DRMIIDIWKETDKIVEDLPVL-----RKYPFKSGVNIMFGCNNFCTYCIVPYVRGRERSR 218 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S +V E KL+ +GV E+ LLGQNVN++ K D K +F +LL + +++GL R+ Sbjct: 219 SPRDIVRECEKLVADGVKEVMLLGQNVNSYGLDFKDDDPNKISFPELLEEVCKVEGLERI 278 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ T HP+D SD L+ + ++HLP+QSGS IL+ MNR++T Y ++D+IR Sbjct: 279 RFMTPHPKDFSDELLDVIERNPKIARHIHLPLQSGSTEILRRMNRKYTKDSYLALVDKIR 338 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PD+AI++D IVGFPGET D T+D+V+K + AF+F YS R GTP + +QV Sbjct: 339 TKLPDVAITTDIIVGFPGETPADVDETIDVVEKASFDNAFTFIYSKRTGTPAAGFPDQVP 398 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442 E E L K ++E ++ G +VL+E ++ LV GR V Sbjct: 399 EEEVKENFDRLLKVVQETARKQSEKLTGVTEKVLVESVNEQDSSLVTGRLSNNTLVHFPG 458 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG+++ V++ + GE V Sbjct: 459 DESLIGEMVDVKLANCHGFYFTGERV 484 >gi|115889751|ref|XP_801957.2| PREDICTED: hypothetical protein isoform 4 [Strongylocentrotus purpuratus] gi|115944930|ref|XP_001194545.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 561 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 162/488 (33%), Positives = 254/488 (52%), Gaps = 50/488 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + ++YGCQMNV D+ + G+++V + AD+I+ TC IRE A +K+++ L Sbjct: 52 RRVYFETYGCQMNVSDTEIAWAILEKSGFQKVEDISHADVILAVTCAIRENAEQKIWNRL 111 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++LKN+R K L + + GC+A+ +++L +S V++V GP Y LP LL A Sbjct: 112 KYFQSLKNNRRKGEVPLKIGLLGCMAERLKKKLLEQSKTVDIVAGPDAYRDLPRLLNVAG 171 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ ++ S+++ + + V + K +AF++I GCD C++C+VP+TRG E S Sbjct: 172 SGQTAINVMLSMDETYADVVPVRLDKDSK---SAFVSIMRGCDNMCSYCIVPFTRGRERS 228 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------GKGLDGEKCT--------- 246 R + +VDE R L D GV E+T+LGQNVN++R +G + Sbjct: 229 RPIDSIVDEIRALSDQGVKEVTVLGQNVNSYRDVSEESYYSNSANEGSAVSEPTRLARGF 288 Query: 247 ------------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 F+DLL ++ + +R+R+T+ HP+D D ++ A D + LHLP Sbjct: 289 KSIYKPKKGGRRFADLLERVALVDPEMRIRFTSPHPKDFPDEVLYAIRDFPNICNQLHLP 348 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 QSGS ++L+ M R ++ Y +++D +++ P +A+SSDFI GF GET++D TM L+ Sbjct: 349 AQSGSTKVLQLMRRGYSREAYLELVDHVQTAIPGVALSSDFIAGFCGETEEDHEDTMSLL 408 Query: 355 DKIGYAQAFSFKYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413 + Y AF F YS R T M + V E VK RL + R+ N VG Sbjct: 409 RLVKYNYAFLFAYSMRQKTHAYHKMQDDVPEEVKQRRLREMITVCRDGMAEINATHVGAK 468 Query: 414 IEVLIEKHGKEKGK-LVGRSPWLQSVVL---------------NSKNHNIGDIIKVRITD 457 VL+E K K LVGR+ VV+ N+++ GD I V IT+ Sbjct: 469 QLVLLEGTSKRSEKDLVGRNDANTRVVIPNTPIPACNGHHHGNNNQSMKPGDYIAVEITE 528 Query: 458 VKISTLYG 465 L G Sbjct: 529 SNSQVLKG 536 >gi|328948379|ref|YP_004365716.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Treponema succinifaciens DSM 2489] gi|328448703|gb|AEB14419.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Treponema succinifaciens DSM 2489] Length = 460 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 149/473 (31%), Positives = 254/473 (53%), Gaps = 47/473 (9%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +F ++YGC+MN+ +S +E + S+G+++ + ADL+V+NTC +R A E+++ LG Sbjct: 3 YFFETYGCEMNIAESASVEQILISRGWKKAENAQLADLVVINTCSVRGSAEERIFGRLGF 62 Query: 87 IRNLKNSR-----------------IKEGG--DLLVVVAGCVAQAEGEEILRRSPIVNVV 127 LK R +++ G L ++V GC+A+ + + ++ P V+ V Sbjct: 63 FSGLKKVRSCAPDAKKRNMEIAAEYVQKNGAVPLTLIVMGCMAERLLKSLQKQWPCVDYV 122 Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187 VG + E+++ G++ + TD F S +G + + F+ I GC+ Sbjct: 123 VGTFAKNKFGEIIQAVEEGQKYIQTDEEPVYVFAETSYEEGAF------STFVPIMHGCN 176 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247 FC++C+VPY RG E+SR + Q++ E L GV EITLLGQNVN++ KG DG F Sbjct: 177 NFCSYCIVPYVRGREVSRPVEQILHELDVLARRGVKEITLLGQNVNSY--KGADG--MNF 232 Query: 248 SDLLYS----LSEIKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 +LL + L + + +R+ +S+P+D SD LI + + LH+ VQ GS+ I Sbjct: 233 PNLLKTICRHLEQTNSPIEWIRFESSNPKDFSDELIDVIAEEKRICRGLHIAVQHGSNSI 292 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 LK+MNR++T +Y ++ ++R P+I +++D ++GFPGET++DF L+ ++ + A Sbjct: 293 LKAMNRKYTREQYLLLVQKLRERIPEIQLTTDIMLGFPGETEEDFEQAASLMKEVEFESA 352 Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERL-------LCLQKKLREQQVSFNDACVGQIIE 415 F + Y+PR GTP + M Q+ VK ERL L + +K+ E+QV N + II Sbjct: 353 FMYYYNPREGTPAAKMQNQIPLEVKKERLQKIIDIQLGITRKVMEKQVGKNIKVLADII- 411 Query: 416 VLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +L+G++ + + + IG ++V I + +T G LV Sbjct: 412 -----SRDNANELLGKTEQNERIAFEAPVSLIGKFVQVHIDSLNGNTFKGSLV 459 >gi|218458623|ref|ZP_03498714.1| putative 2-methylthioadenine synthetase (miaB-like) protein [Rhizobium etli Kim 5] Length = 204 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 125/198 (63%), Positives = 155/198 (78%) Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 HPRDM D LI+AH DL LMPYLHLPVQSGSDRILK+MNRRHTA EY +I+RIR+VRPD Sbjct: 1 HPRDMDDRLIEAHRDLRALMPYLHLPVQSGSDRILKAMNRRHTAAEYLSLIERIRTVRPD 60 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 IA+S DFI GFPGETD+DF T++LV + YAQAFSFKYS R GTPG+ M +QV E +KA Sbjct: 61 IALSGDFITGFPGETDEDFEDTLELVKTVRYAQAFSFKYSTRPGTPGAEMKDQVPEEIKA 120 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 ERL LQ L +QQ F ++ +G+ I++L+EK G+ G+L+GRSPWLQSV +++K IG Sbjct: 121 ERLERLQALLLKQQQEFAESRIGKEIDLLLEKPGRMPGQLIGRSPWLQSVNVDAKASQIG 180 Query: 449 DIIKVRITDVKISTLYGE 466 DIIKVRIT ++L+ E Sbjct: 181 DIIKVRITGTGTNSLFAE 198 >gi|13385358|ref|NP_080152.1| CDK5 regulatory subunit-associated protein 1 [Mus musculus] gi|32129439|sp|Q8BTW8|CK5P1_MOUSE RecName: Full=CDK5 regulatory subunit-associated protein 1; AltName: Full=CDK5 activator-binding protein C42 gi|12845305|dbj|BAB26700.1| unnamed protein product [Mus musculus] gi|19264024|gb|AAH25132.1| CDK5 regulatory subunit associated protein 1 [Mus musculus] gi|123228756|emb|CAM15624.1| CDK5 regulatory subunit associated protein 1 [Mus musculus] gi|148674120|gb|EDL06067.1| CDK5 regulatory subunit associated protein 1 [Mus musculus] Length = 588 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 157/479 (32%), Positives = 255/479 (53%), Gaps = 38/479 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREKA + +++ L Sbjct: 99 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 158 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++ LK R + L + + GC+A+ EIL R +V+++ GP Y LP LL Sbjct: 159 HQLKVLKTKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVE 218 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ + S+++ + + V + +AF++I GCD C++C+VP+TRG E S Sbjct: 219 SGQQAANVLLSLDETYADIMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 275 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDGE------ 243 R ++ ++DE RKL + G+ E+TLLGQNVN++R +G Sbjct: 276 RPVASILDEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAGSANLSRGFTTNYKPKQG 335 Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 FS LL +S I +R+R+T+ HP+D D +++ + + +HLP QSGS R+L Sbjct: 336 GLRFSHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVL 395 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 +M R ++ Y ++ +R P +++SSDFI GF GET+DD R T+ L+ ++ Y F Sbjct: 396 DAMRRGYSREAYVALVHHVRETIPGVSLSSDFITGFCGETEDDHRQTVSLLREVQYNTGF 455 Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 F YS R T + L + V E VK RL L RE+ N VG VL+E Sbjct: 456 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEASKANKTSVGCSQLVLVEGFS 515 Query: 423 KEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKISTLYGELV 468 K L GR+ L+ + +++ +I GD + V+IT TL G ++ Sbjct: 516 KRSTTDLCGRNDANLKVIFPDAEVEDITNPGLKVRAQPGDYVLVKITSASSQTLKGHIL 574 >gi|237735920|ref|ZP_04566401.1| 2-methylthioadenine synthetase [Mollicutes bacterium D7] gi|229381665|gb|EEO31756.1| 2-methylthioadenine synthetase [Coprobacillus sp. D7] Length = 428 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 155/432 (35%), Positives = 245/432 (56%), Gaps = 30/432 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S M +F GY+ V+ AD+ V+NTC + K R + Sbjct: 8 TLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKS-------RQM 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR---LPELLERARFGK 147 I++ + V GC +Q EEI + V VV+G Q YR + + E G+ Sbjct: 61 IRKAIRKNPKATICVVGCYSQTAPEEI-EKIEGVGVVLGTQ--YRSDIVKYVDEHLETGE 117 Query: 148 RVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V+ D + KFE L+I +R + AFL IQ+GC+ FCT+C++PY RG SR Sbjct: 118 MVIKVDNVMNLRKFEDLNI-----DRFKNTRAFLKIQDGCNNFCTYCIIPYARGRVRSRQ 172 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 V+++A+KL+DNG EI L G + + G D + +F +LL L +IKGL RLR + Sbjct: 173 KESVLNQAQKLVDNGYVEIVLTGIHTAGY---GEDLDDYSFYELLVDLVKIKGLKRLRIS 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + +SD +I G ++++ +LH+P+Q+GSD LK MNR++T EY + I++IRS Sbjct: 230 SIETSQISDEIIDLIGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYL 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P+IA ++D IVGFPGETD++F T + + ++ Y++ F YSPR TP + M +QV++ + Sbjct: 290 PNIAFTTDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQVNDQI 349 Query: 387 K---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 K A RLL L K+L + F +G+ ++VL EK E L+G + V + + Sbjct: 350 KHERANRLLQLSKELNHE---FALKQIGKTLKVLFEKRDGE--YLIGHAGDYLKVKVKTA 404 Query: 444 NHNIGDIIKVRI 455 ++ IG+I+ ++I Sbjct: 405 DNLIGEIVTIKI 416 >gi|322379427|ref|ZP_08053797.1| conserved hypothetical ATP-binding protein [Helicobacter suis HS1] gi|322380962|ref|ZP_08055028.1| MiaB-like protein [Helicobacter suis HS5] gi|321146634|gb|EFX41468.1| MiaB-like protein [Helicobacter suis HS5] gi|321148136|gb|EFX42666.1| conserved hypothetical ATP-binding protein [Helicobacter suis HS1] Length = 435 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 151/438 (34%), Positives = 248/438 (56%), Gaps = 31/438 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ ++++ GC MN DS + GY V +ADLI++NTC +REK K++S + Sbjct: 4 QKVYIETMGCAMNTRDSQHLIGELSKIGYVEVKEAKEADLILINTCSVREKPERKLFSEI 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G+ +K K G V GC A G +IL+++P V+ V+G + ++ ++++R + Sbjct: 64 GQFAKIKKPNAKIG------VCGCSASHMGVQILQKAPSVDFVLGARNVSKITDIIKREK 117 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGY----NRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + +D D D Y + + A L I GCDK CT+C+VP+TRG Sbjct: 118 AVEISLDHD-------------DSTYVFNTHAPSQIKALLNISIGCDKHCTYCIVPHTRG 164 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKG 259 EIS + ++ EA KL GV EI LLGQNVN + + + K FS LL +LS+I+G Sbjct: 165 KEISIPMDLILKEAEKLTKQGVKEILLLGQNVNNYGVRFSIKHPKVNFSALLENLSQIEG 224 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+T+ HP M + ++ + +H+P+QSGS+ ILK+M R ++ Y I Sbjct: 225 LKRIRFTSPHPLHMDNAFLECFARNPKVCKSIHIPLQSGSNAILKAMKRGYSKEWYLDRI 284 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R++S+ P++ IS+D IVGFPGET DF T+++++++ + +SF YS R TP + L Sbjct: 285 TRLKSLVPNVGISTDIIVGFPGETQQDFEQTLEVLEQVRFDTLYSFIYSARPLTPAYH-L 343 Query: 380 EQVDENVKAERLLCLQKKLRE--QQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 E+V EN+ L LQ + RE +Q + ++ VG+I +VL+E + + GRS + Sbjct: 344 EKVPENIAHHNLERLQSRHREILEQKARDE--VGKIHQVLVENITEPLAE--GRSDNGRL 399 Query: 438 VVLNSKNHNIGDIIKVRI 455 + + + +GD+++V++ Sbjct: 400 LSFEALSARVGDLVRVQV 417 >gi|262340984|ref|YP_003283839.1| MiaB family tRNA modification enzyme: 2-methylthioadenine synthetase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272321|gb|ACY40229.1| MiaB family tRNA modification enzyme: 2-methylthioadenine synthetase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 453 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 155/458 (33%), Positives = 263/458 (57%), Gaps = 14/458 (3%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 M+ + +Q + Q F++++YGCQMN+ DS + + + G+ N+++ AD+I+ N+C I Sbjct: 1 MMEKNKNQKKLNQSFYIENYGCQMNLSDSEIVISILSNDGFVLSNNLEKADIILFNSCSI 60 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 REKA + L +++ LK + G V GC+++ ++ I + V P + Sbjct: 61 REKAELTLKKRLEQLQFLKKKKKTLFG-----VIGCLSKKIINFLIEEKKI-DFFVNPNS 114 Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 Y ++ + + A GK+ + ++ K E S + Y ++ VT FL+I GCD CTF Sbjct: 115 YKKISDFIRYAMDGKKSLHLNH---QKNETYSDIQPFYLNQKKVTTFLSITRGCDNMCTF 171 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-GKGLDGEKCTFSDLL 251 C+VP+TRG E S S ++++ + L NG EITLLGQNV+++R KG FS+LL Sbjct: 172 CIVPFTRGRERSSSPYSIIEQCKHLYQNGYKEITLLGQNVDSYRWSKGFIT--IGFSELL 229 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L+ +R+R++TS+P DMSD +++ + ++HLPVQSGS++IL+ MNR++T Sbjct: 230 NLLALEIPSMRIRFSTSNPHDMSDKVLEIISKHPNICKHIHLPVQSGSNKILRLMNRKYT 289 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 +Y +++RIR++ P+ +IS D + GF E + D + T+DL++KI Y + F YSPR Sbjct: 290 REKYLSLVNRIRTIIPECSISHDIMTGFCNEEEKDHQDTIDLMNKIQYNYGYMFSYSPRP 349 Query: 372 GTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LV 429 GT N+ + V ++VK +RL + R +G++ E+LIE K+ + Sbjct: 350 GTYAYRNLQDNVPKDVKKKRLKEIIDLQRNHSSFRMKEYLGKVQEILIEGESKKNCQYWY 409 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 GR+ VV +++ IGD ++IT+ +TL G++ Sbjct: 410 GRNTQNLVVVFPKQSYKIGDFTHIQITETTSATLIGKI 447 >gi|145356333|ref|XP_001422387.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582629|gb|ABP00704.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 579 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 166/489 (33%), Positives = 256/489 (52%), Gaps = 55/489 (11%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 +V++YGCQMNV DS M + GY+ ++DAD+I++NTC IR+KA K++ L Sbjct: 70 YVETYGCQMNVNDSEVMMAVLEGAGYDETKEVNDADVILINTCAIRDKAEAKIWQRLAYF 129 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARF 145 R+L N + K +V V GC+A+ E++L + ++V GP Y LP L++ Sbjct: 130 RSLGNGK-KRSEKPVVGVLGCMAERIKEKLLEADRLADIVAGPDAYRDLPNLIDAVVGNP 188 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-TAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + ++ SVE+ + + V R+ G +AF+TI GCD C FC+VPYTRG E S Sbjct: 189 GGKAMNVQLSVEETYADIIPV-----REAGSHSAFVTIMRGCDNACAFCIVPYTRGRERS 243 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNV-------------NAWRGKG------LDGEK- 244 R L+ ++ E R L + GV E+TLLGQN+ +A+ G D E+ Sbjct: 244 RDLASIMYEIRLLSEQGVKEVTLLGQNLANASTERLASASGSAFVGYADGFASRYDPERK 303 Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300 F++LL ++ + +R+R+T+ HP+D D +++ D + LH+P QSGS Sbjct: 304 RAGTIQFAELLDKVASVDPEMRIRFTSPHPKDFPDDVLRVIRDRPNVSKCLHMPAQSGSS 363 Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 L+ M R +T Y +IDR++++ P AI++D I GF GET+DD T+ L+ IGY Sbjct: 364 ATLERMARGYTRESYFALIDRVKAMIPGCAITTDIISGFCGETEDDHEDTVSLMSAIGYE 423 Query: 361 QAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 QAF F YS R GT G + ++ V E+VK RL + R + +G VL+E Sbjct: 424 QAFMFAYSEREGTAGQRHQIDDVPEDVKQRRLQEVIDAFRARAAEKQQMEIGSTHCVLVE 483 Query: 420 KHGKEKG-KLVGRSPWLQSVVLNSKNHNI-------------------GDIIKVRITDVK 459 K+ + G++ + VV KN I GD + VR+T Sbjct: 484 GPSKKNSDEWTGKTDTSKWVVFE-KNDAIGKYAGDEDAPTSGSYGVKPGDYVAVRVTGCS 542 Query: 460 ISTLYGELV 468 TL+G+++ Sbjct: 543 TGTLFGQVL 551 >gi|148235437|ref|NP_001090499.1| CDK5 regulatory subunit associated protein 1 [Xenopus laevis] gi|116063382|gb|AAI23345.1| MGC154823 protein [Xenopus laevis] Length = 565 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 163/478 (34%), Positives = 253/478 (52%), Gaps = 41/478 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGCQMNV D+ + GY R + +AD+I L TC +REKA + +++ L Sbjct: 82 KIYLETYGCQMNVNDTEIAWSILQQNGYVRTHIETEADVIFLVTCSVREKAEQTIWNRLQ 141 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + LK R K+ + + + GC+A+ +EIL R +V++V GP Y LP LL A Sbjct: 142 QFATLKRKRSKDN-RMRIGILGCMAERLKQEILERENLVDIVAGPDAYRDLPRLLAVAES 200 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G++V + SV++ + + V + K +AF++I GCD CT+C+VP+TRG E SR Sbjct: 201 GQQVANVLLSVDETYADIMPVHTSASSK---SAFVSIMRGCDNMCTYCIVPFTRGRERSR 257 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-----------------RG-----KGLDGE 243 L +++E R L GV E+TLLGQNVN++ RG K G Sbjct: 258 PLHSIIEEVRMLSSQGVKEVTLLGQNVNSYCDSSSVQFPNVGSPSLSRGFSTIYKHKKG- 316 Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 F DLL +S+I +R+R+T+ HP+D D +++ + + +H+P QSGS+R+L Sbjct: 317 GLRFVDLLDKVSQIDPEMRIRFTSPHPKDFPDEVLQLIAERHNICKQIHIPAQSGSNRVL 376 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 +SM R ++ Y +I IR P +++SSDFI GF ET++D + T+ L+ ++ Y A+ Sbjct: 377 ESMRRGYSREAYLDLIQNIRESIPGVSLSSDFITGFCQETEEDHQQTLSLLREVSYNAAY 436 Query: 364 SFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 F YS R T + L+ V VK RL L RE+ N VG VL+E Sbjct: 437 LFAYSMRKKTRAYHRLQDDVPPEVKQRRLEELISVFREEAGRVNQRTVGSTQLVLVEGPS 496 Query: 423 K-EKGKLVGR-----------SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 K +L GR +P ++ L +K GD + V+IT +L G L+ Sbjct: 497 KRSPAELCGRNDGNTKVIFSETPKADNLALENKIQP-GDYVLVKITSSSSQSLKGTLL 553 >gi|219849842|ref|YP_002464275.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Chloroflexus aggregans DSM 9485] gi|219544101|gb|ACL25839.1| RNA modification enzyme, MiaB family [Chloroflexus aggregans DSM 9485] Length = 459 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 29/453 (6%) Query: 19 DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78 DQ +R++V + GCQMN+ DS R+E GY ++A IVLN+C +R A E Sbjct: 16 DQTPRERRYYVWTVGCQMNISDSERLEAALQGVGYSPAARPEEASFIVLNSCSVRASAEE 75 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLP 137 ++ LG + +K S D +V+ GC+ I P+V+ V P + Sbjct: 76 RILGKLGELVRVKRSY----PDTKIVLWGCMVGPNNRSIFAEQLPMVDHFVSPSAVDEVV 131 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 L + Y++++ L + D ++R V+ + IQ GC+ C++CV+P Sbjct: 132 AL---------APNPIYTLDEPA--LPVRD--WSRP-PVSVHVPIQYGCNMTCSYCVIPL 177 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG E SR L ++V+E R+++ G EITLLGQ V++W G L G + +DLL ++ I Sbjct: 178 RRGRERSRPLPEIVEEVRRIVARGAKEITLLGQIVDSW-GHDLPG-RPELADLLEAVDPI 235 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 GL+RLR+ TSHP M+D LI+ L P ++LPVQ+GSDR+LK M R +T Y+ Sbjct: 236 PGLLRLRFLTSHPAWMTDRLIETVARLPRCQPEINLPVQAGSDRVLKLMRRGYTVARYKS 295 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +I +IR+ P I++++D IVG PGET++DFR TM+L +IG+ + +S R GT + Sbjct: 296 LIAKIRAAIPHISLTTDIIVGHPGETEEDFRQTMELCAEIGFDKVHIAAFSARPGTLAAE 355 Query: 378 MLE----QVDENVKAERLLCLQKKLREQQVSFNDA-CVGQIIEVLIEKHGKEKGKLVGRS 432 + V +VK ER L+ +L+EQ + A +GQ +EVL+E G+ KGK GR+ Sbjct: 356 QEQDPALAVPPDVKEERRRRLE-QLQEQIATERMARFLGQTVEVLVE--GESKGKWRGRT 412 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 P + V + G ++ V+IT +L G Sbjct: 413 PGNRLVFFSHPADLTGQLVPVKITATSPWSLQG 445 >gi|239623740|ref|ZP_04666771.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521771|gb|EEQ61637.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 492 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 157/436 (36%), Positives = 247/436 (56%), Gaps = 47/436 (10%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 V ++ D+ P + ++GCQMN DS ++ + + GY V S ++AD ++ NTC +R Sbjct: 22 VKELSDRLGRPLTCCINTFGCQMNARDSEKLLGILETIGYRAVES-EEADFVLYNTCTVR 80 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQ 131 E A +VY LG++ K K+ +++ + GC+ Q + ++I + V+++ G Sbjct: 81 ENANLRVYGRLGQLGAYK----KKHPQMMIALCGCMMQEKEVVDKIKKSYRYVDLIFGTH 136 Query: 132 TYYRLPELLE-------------RARFGKRVV------------DTDYSVEDKFERLSIV 166 ++L EL+ +A G V DTD VED V Sbjct: 137 NIFKLAELVSLCLDSRKKEDESRKAAEGTPVKGHKHKMVIDVWEDTDQIVED-----LPV 191 Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226 + Y K GV I GC+ FC++C+VPY RG E SR +++ E R+L +GV E+ Sbjct: 192 ERKYPFKSGV----NIMFGCNNFCSYCIVPYVRGRERSRKPEEIIKEIRRLASDGVVEVM 247 Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286 LLGQNVN++ GK L+ TF+ LL + ++ G+ R+R+ TSHP+D+SD LI+ Sbjct: 248 LLGQNVNSY-GKNLET-PMTFAGLLREVEKVDGIRRIRFMTSHPKDLSDELIEVMAGSGK 305 Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 + +LHLP+QSGS RILK MNR +T ++ + RI++ P I++++D IVGFPGET++D Sbjct: 306 ICRHLHLPLQSGSSRILKEMNRHYTKEQFLDLAARIKAAVPGISLTTDIIVGFPGETEED 365 Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406 F T+D+V ++G+ AF+F YS R GTP + M +QV E+V ER L K++ Q +S Sbjct: 366 FLETLDVVRRVGFDSAFTFIYSKRTGTPAAAMEDQVPEDVVKERFDRLLKEV--QDISAE 423 Query: 407 DACVGQ--IIEVLIEK 420 C + + EVL+E+ Sbjct: 424 VCCRDEHTVQEVLVEE 439 >gi|195143761|ref|XP_002012866.1| GL23830 [Drosophila persimilis] gi|194101809|gb|EDW23852.1| GL23830 [Drosophila persimilis] Length = 589 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 146/414 (35%), Positives = 230/414 (55%), Gaps = 25/414 (6%) Query: 32 YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 YGCQMN D+ + + GYER ++DADL++L TC +RE A +K+++ L +R +K Sbjct: 105 YGCQMNTNDTEVVWSILKQHGYERCQEVEDADLVMLVTCAVREGAEQKIWNRLRHLRAMK 164 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150 R + L + + GC+A+ E +L + V+V+ GP +Y LP LL +R +G + Sbjct: 165 QKRGAKRQPLQLTLLGCMAERLKERLLDQEQCVDVIAGPDSYKDLPRLLAVSRHYGNSAI 224 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + S+++ + + V + TAF++I GCD CT+C+VP+TRG E SR L+ + Sbjct: 225 NVLLSLDETYADVMPVRLNSDSP---TAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASI 281 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------------------FSDLLY 252 V+E + L + GV E+TLLGQNVN++R KG T FS+LL Sbjct: 282 VNEVQALQEQGVKEVTLLGQNVNSYRDKGAGQTSDTSLVPGFKTVYKPKTGGIPFSELLQ 341 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 S++E +R+R+T+ HP+D SD +++ D + LHLP QSG+ +L M R +T Sbjct: 342 SVAEAVPEMRIRFTSPHPKDFSDEVLRVIRDYPNVCKQLHLPAQSGNTEVLARMRRGYTR 401 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 Y ++++ IR + P + +SSDFI GF GET+ +F T+ L++++ Y A+ F YS R Sbjct: 402 EAYLELVEHIREILPTVGLSSDFICGFCGETEAEFEDTISLINRVQYNVAYLFAYSMREK 461 Query: 373 TPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 T ++ V VK RL + + RE + G+ +LIE GK K Sbjct: 462 TTAHRRYVDDVPVAVKTARLQRMVQAFREGATQLHKNFEGKQQLILIE--GKSK 513 >gi|167754793|ref|ZP_02426920.1| hypothetical protein CLORAM_00297 [Clostridium ramosum DSM 1402] gi|167705625|gb|EDS20204.1| hypothetical protein CLORAM_00297 [Clostridium ramosum DSM 1402] Length = 428 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 155/432 (35%), Positives = 245/432 (56%), Gaps = 30/432 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S M +F GY+ V+ AD+ V+NTC + K R + Sbjct: 8 TLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKS-------RQM 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR---LPELLERARFGK 147 I++ + V GC +Q EEI + V VV+G Q YR + + E G+ Sbjct: 61 IRKAIRKNPKATICVVGCYSQTAPEEI-EKIEGVGVVLGTQ--YRSDIVKYVDEHLGTGE 117 Query: 148 RVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V+ D + KFE L+I +R + AFL IQ+GC+ FCT+C++PY RG SR Sbjct: 118 MVIKVDNVMNLRKFEDLNI-----DRFKNTRAFLKIQDGCNNFCTYCIIPYARGRVRSRQ 172 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 V+++A+KL+DNG EI L G + + G D + +F +LL L +IKGL RLR + Sbjct: 173 KESVLNQAQKLVDNGYVEIVLTGIHTAGY---GEDLDDYSFYELLVDLVKIKGLKRLRIS 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + +SD +I G ++++ +LH+P+Q+GSD LK MNR++T EY + I++IRS Sbjct: 230 SIETSQISDEIIDLIGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYL 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P+IA ++D IVGFPGETD++F T + + ++ Y++ F YSPR TP + M +QV++ + Sbjct: 290 PNIAFTTDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQVNDQI 349 Query: 387 K---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 K A RLL L K+L + F +G+ ++VL EK E L+G + V + + Sbjct: 350 KHERANRLLQLSKELNHE---FALKQIGKTLKVLFEKRDGE--YLIGHAGDYLKVKVKTA 404 Query: 444 NHNIGDIIKVRI 455 ++ IG+I+ ++I Sbjct: 405 DNLIGEIVTIKI 416 >gi|253826987|ref|ZP_04869872.1| putative 2-methylthioadenine synthetase [Helicobacter canadensis MIT 98-5491] gi|253510393|gb|EES89052.1| putative 2-methylthioadenine synthetase [Helicobacter canadensis MIT 98-5491] Length = 425 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 151/440 (34%), Positives = 245/440 (55%), Gaps = 22/440 (5%) Query: 36 MNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN DS + ++ + Y +ADLI++NTC +REK +K++S +G+ +K Sbjct: 1 MNERDSEHIIAELEEKENYTLTEDPKEADLILINTCSVREKPEKKLFSEIGQYAKIKKED 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154 K G V GC A G EIL++S VN V+G + ++ ++L + R VD DY Sbjct: 61 AKIG------VCGCTASHLGNEILKKSKAVNFVLGARNVSKISQILHKDRVA--WVDIDY 112 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 + + +N + + I GCDK CT+C+VP+TRG EIS ++ EA Sbjct: 113 D-----DSTYVFSSKHNST--LKGMINISIGCDKQCTYCIVPHTRGNEISIPADLILKEA 165 Query: 215 RKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +KL+DNG EI LLGQNVN + R D K F+ LL +S+I GL R+R+T+ HP M Sbjct: 166 KKLVDNGTKEILLLGQNVNNYGRRFSNDHRKINFTQLLNEISQINGLERIRFTSPHPLHM 225 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 D I + + +H+P+QSGS +IL+ M R ++ + + ++R++ PD++I + Sbjct: 226 DDEFINEFANNPKICKAIHMPLQSGSTKILQKMKRGYSKEWFLDRVAKMRALIPDLSIGT 285 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKA 388 D IVGFP E+++DF T+D+++K+ + +SF YS R T + L+ +DE + Sbjct: 286 DIIVGFPTESEEDFLDTLDVLEKVRFDTLYSFIYSTRPHTQAATWLDNGEIQLLDEEIAK 345 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 RL+ L+ + +E N +G+I VL E + +E L GRS + + + + + IG Sbjct: 346 NRLMILKDRHKEILAQENAKQLGKIHPVLFESYDEENFLLEGRSDTNKLIRVKAGRNLIG 405 Query: 449 DIIKVRITDVKISTLYGELV 468 +I V+I+++K + L GEL+ Sbjct: 406 EICNVKISEIKGAQLIGELL 425 >gi|170040301|ref|XP_001847942.1| CDK5 regulatory subunit-associated protein 1 [Culex quinquefasciatus] gi|167863869|gb|EDS27252.1| CDK5 regulatory subunit-associated protein 1 [Culex quinquefasciatus] Length = 579 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 153/447 (34%), Positives = 241/447 (53%), Gaps = 26/447 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F + YGCQMN D+ + + Y+R S+ DAD+++L TC IR+ A V++ L Sbjct: 78 RKVFFEVYGCQMNTNDTEIVWSILKGHEYQRTGSIKDADVVLLMTCAIRDGAESTVWNRL 137 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +R +K R EG L V V GC+A+ +++ + V+VV GP +Y LP LL + Sbjct: 138 KHVRLMKERRESEGRALQVGVLGCMAERLKRQLVEKEGSVDVVAGPDSYKDLPRLLAVGQ 197 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ ++ S+++ + + V +RK TA+++I GCD C++C+VP+TRG E S Sbjct: 198 KGQKAINVLLSLDETYADVMPVK--LDRK-SRTAYVSIMRGCDNMCSYCIVPFTRGKERS 254 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCT---------------- 246 R ++ + DEA L G+ EITLLGQNVN++R DGEK Sbjct: 255 RPVASIRDEALHLEAKGIKEITLLGQNVNSYRDLSTESDGEKQASVLAPGFKTVYKTKVG 314 Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 F++LL L+EI +R+R+T+ HP+D +++ + LHLP QSGS +L Sbjct: 315 GLRFAELLTELAEIVPEMRIRFTSPHPKDFPREVLETIARYPNICKSLHLPAQSGSSTVL 374 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 + M R +T Y ++D +R++ P++ +SSDFI GF GETD +F T+ L++++GY AF Sbjct: 375 ERMRRGYTREAYLNLVDEVRTIVPNVTLSSDFICGFCGETDAEFAETLSLIEQVGYHTAF 434 Query: 364 SFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 F YS R T + V +K +RL + K R N VG+ +L+E Sbjct: 435 LFAYSMREKTTAHRRFTDDVPNPIKQQRLRDMIKVFRAGAERLNAQFVGREELILVEGAS 494 Query: 423 KEK-GKLVGRSPWLQSVVLNSKNHNIG 448 K L GR+ V++ + IG Sbjct: 495 KRSPNDLAGRNDGNVKVIIPGGDVPIG 521 >gi|195443590|ref|XP_002069485.1| GK11551 [Drosophila willistoni] gi|194165570|gb|EDW80471.1| GK11551 [Drosophila willistoni] Length = 576 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 155/470 (32%), Positives = 243/470 (51%), Gaps = 39/470 (8%) Query: 32 YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 YGCQMN D+ + + GY+R + ++AD+I+L TC +R+ A +K+++ L +R LK Sbjct: 95 YGCQMNTNDTEVVWSILQENGYQRCHDQNEADVIMLVTCAVRDGAEQKIWNRLRHLRALK 154 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150 R G L + + GC+A+ E +L + V+V+ GP +Y LP LL +R +G + Sbjct: 155 EKRSSRRGPLQLTLLGCMAERLKERLLEQEKSVDVIAGPDSYKDLPRLLAVSRHYGNSAI 214 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + S+++ + + V TAF++I GCD C++C+VP+TRG E SR L + Sbjct: 215 NVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCSYCIVPFTRGRERSRPLESI 271 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--------------------FSDL 250 V E L + GV E+TLLGQNVN++R + E T FS L Sbjct: 272 VREVLTLQEQGVKEVTLLGQNVNSYRDRSGQDEDNTKDAPVPGFKTVYKPKSGGLPFSKL 331 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L S++E +R+R+T+ HP+D SD +++ D + LHLP QSG+ ++L M R + Sbjct: 332 LESVAEAVPEMRIRFTSPHPKDFSDDVLRIIRDYPNVCKQLHLPAQSGNSQVLARMRRGY 391 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 T Y ++++ IR + P + +SSDFI GF GETD++F T+ L+ K+ Y A+ F YS R Sbjct: 392 TREAYLELVEHIRKILPHVGLSSDFICGFCGETDEEFEDTISLIQKVRYNVAYLFAYSMR 451 Query: 371 LGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KL 428 T ++ V VK +RL + + R + VGQ +LIE K Sbjct: 452 EKTTAHRRFVDDVPLAVKTQRLQRMVQAFRTGATQLHQEFVGQQQLILIEGRSKRSALHW 511 Query: 429 VGRSPWLQSVVLNS-------------KNHNIGDIIKVRITDVKISTLYG 465 GR+ V++ S K+ +GD + RI + L G Sbjct: 512 FGRNDANIKVIVPSMEVPVAGQDSSEMKSFGVGDFVVARIEESNSQVLKG 561 >gi|260789490|ref|XP_002589779.1| hypothetical protein BRAFLDRAFT_125887 [Branchiostoma floridae] gi|229274962|gb|EEN45790.1| hypothetical protein BRAFLDRAFT_125887 [Branchiostoma floridae] Length = 514 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 155/487 (31%), Positives = 248/487 (50%), Gaps = 51/487 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + ++YGCQMNV D+ + GY+R S++DAD+I+ TC IRE A +K+++ L Sbjct: 6 RKVYFETYGCQMNVSDTEIAWSVLKDSGYQRTESVNDADVILAVTCAIRENAEQKIWTRL 65 Query: 85 GRIRNLKNSRIKE--------GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 R +K R K G + V + C+A+ +++L R V+++ GP Y L Sbjct: 66 QEFRAMKTRRNKSRPLKVGVLGKENCVDILRCMAERLKKDLLEREKSVDLIAGPDAYRDL 125 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIV--DGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 P LL G++ + S+++ + + V + G TAF++I GCD C++C+ Sbjct: 126 PRLLSVTESGQQAANVVLSLDETYADVMPVRMNAG-----APTAFVSIMRGCDNMCSYCI 180 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-------- 246 VP+TRG E SR + +++E R L GV E+TLLGQNVN++R + Sbjct: 181 VPFTRGRERSRPIKSILEEVRALSGQGVKEVTLLGQNVNSYRDMSEQQHQLADSPTNLSA 240 Query: 247 --------------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292 FS LL ++++ +R+R+ + HP+D D +++ D + +LH Sbjct: 241 GFGTIYRKKKGGLRFSALLDRVAQVDPEMRIRFVSPHPKDFPDEVLQLIRDRPNICNHLH 300 Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 LP QSGS ++L+SM R HT Y +++ ++ V PD+++SSDFIVGF GET+DD T+ Sbjct: 301 LPAQSGSSQVLQSMRRNHTREAYLELVQHVKKVIPDVSLSSDFIVGFCGETEDDHNQTLS 360 Query: 353 LVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411 L + Y A+ F YS R T +++ V +VK RL L R+ N +G Sbjct: 361 LARLVRYDNAYLFAYSMRKKTHAYHKLMDDVPADVKQRRLAELINVCRQGMAEANAEKIG 420 Query: 412 QIIEVLIEKHGKEKGK-LVGRSPWLQSVVL------------NSKNHNIGDIIKVRITDV 458 Q+ VL+E K+ L GR+ V++ S GD + V+IT Sbjct: 421 QVHLVLVEGVSKKSASDLAGRNDGNTKVIIPNMDIPDEVGGQKSSPMKTGDYVAVKITSY 480 Query: 459 KISTLYG 465 L G Sbjct: 481 TSQVLKG 487 >gi|257456801|ref|ZP_05621985.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Treponema vincentii ATCC 35580] gi|257445807|gb|EEV20866.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Treponema vincentii ATCC 35580] Length = 456 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 153/464 (32%), Positives = 260/464 (56%), Gaps = 29/464 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++F+++YGCQMN +S +E + +G+E + +L+++NTC +R A +V+ LG Sbjct: 2 KYFIETYGCQMNFAESAALEQLLRERGWEAAEDIQHCNLLIVNTCSVRITAETRVFGRLG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG---PQTYYRLPELLER 142 S +K+ D +++ GC+AQ +EI + P+++ VVG + ++ + +ER Sbjct: 62 LF-----SAMKKKQDFTIILMGCMAQRLHDEIKSKFPLLDYVVGMFERDQFTKIFDAVER 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPY 197 F + V + + + S + Y +R T +F+ I GC+ FCT+C+VPY Sbjct: 117 ETFWEGSVAGNAKLASFCPQSSNEERYYFSERSYTEGTFQSFVPIMNGCNNFCTYCIVPY 176 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGEKCTFSDLLYSLSE 256 RG EISR + ++DE L GV EITLLGQNVN++ G G K F LL ++S+ Sbjct: 177 IRGREISRPVESILDEITFLSGKGVKEITLLGQNVNSYHGIDPTSGSKVNFPALLRAVSQ 236 Query: 257 I---KGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 + +++ +R+ +SHP+D+SD LI+ + + LHLPVQ+GSD +L MNR +T Sbjct: 237 TCTKQDVIKWIRFISSHPKDLSDELIEVMAEDPRVCKSLHLPVQNGSDEVLARMNRGYTV 296 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 +Y +I++++R+ P+I +++D ++GFPGET +F T+DL+ + + AF + Y+PR G Sbjct: 297 EQYLKIVEKLRNRIPNIVLTTDILIGFPGETQAEFEKTLDLMRTVQFDSAFMYHYNPREG 356 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND----ACVGQIIEVLIEKHGKEKG-K 427 T N +++ + AER+ LQ+ + QQ S D VG + +L+E + + Sbjct: 357 TKAYNFPDRIPD---AERINRLQQVIDLQQ-SITDLKMQQRVGSTVMMLVESQSRNNPDE 412 Query: 428 LVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYGELVV 469 L G + + VL K +IG +KV++ +K T VV Sbjct: 413 LFGHTEQGEMAVLAEKCDPKHIGHFMKVQLQSIKGKTFRAVPVV 456 >gi|261749500|ref|YP_003257186.1| RNA modification protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497593|gb|ACX84043.1| RNA modification protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 466 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 159/459 (34%), Positives = 254/459 (55%), Gaps = 23/459 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P ++++SYGCQMN+ D+ + + G+ N++ A +I+LNTC IR+KA + + Sbjct: 11 TPFFYYIESYGCQMNISDTEIIISILSKNGFLLTNNLKKAHIILLNTCAIRKKAELSIKN 70 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L +R LK++ K L + GC++++E + S +++ +GP +Y ++P+++ Sbjct: 71 RLENLRYLKSNNQKIP---LFGILGCLSKSE-----KYSNLIDFSIGPNSYRKIPDIIRL 122 Query: 143 ARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 ++ + E++ E + + K+ +T FL+I GCD CTFC+VP+TRG Sbjct: 123 VMMNDEKKIKPILLSENQNETYENISPSPSIKK-ITTFLSITRGCDNMCTFCIVPFTRGR 181 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--------DGEKCT-FSDL 250 E S S ++ E L + G E+TLLGQNV++ W G GL + EK FS L Sbjct: 182 ERSSSPYSIIKECENLYEKGYKEVTLLGQNVDSYLWFGGGLKKQIKIDNNNEKIIDFSRL 241 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L L+ +R+R++TS+P DMSD +I+ + ++HLPVQSGS++ILK MNR++ Sbjct: 242 LDLLASKIPFMRIRFSTSNPHDMSDRVIEVISKHSNICKHIHLPVQSGSNKILKLMNRKY 301 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 T +Y +I +IRS+ P+ +IS D I GF E ++D T+ L++K+ Y + F YSPR Sbjct: 302 TREKYLSLIQKIRSIIPECSISHDIITGFCNEEEEDHLETISLMNKVKYDYGYMFSYSPR 361 Query: 371 LGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKL 428 GT L + V EN+K +RL + R + +G I EVLIE K K Sbjct: 362 AGTYAYKKLKDNVPENIKKKRLKEIIDLQRIHSIFRMKKYLGTIQEVLIEGKSKKNNQDW 421 Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 GR+ VV K IG+ + V+IT+ +TL G + Sbjct: 422 YGRNTQNIVVVFPKKLSKIGETVFVKITNCTSATLIGRI 460 >gi|150019979|ref|YP_001305333.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho melanesiensis BI429] gi|229891013|sp|A6LJ47|MIAB_THEM4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|149792500|gb|ABR29948.1| RNA modification enzyme, MiaB family [Thermosipho melanesiensis BI429] Length = 430 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 155/448 (34%), Positives = 253/448 (56%), Gaps = 26/448 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +K+YGCQMN DS + +GYE N+ +DAD+++LNTC +R+K+ +K YS + Sbjct: 2 KKIHIKTYGCQMNENDSEVAKFYLEEEGYEITNNENDADIVILNTCVVRKKSEDKFYSHI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++ K ++I + + GC A+ E E++ +R V V+G + +P+ +ERA Sbjct: 62 GELK--KQNKI-------IGIMGCGAEKEKEKLFKRG--VKFVIGTRAIPLIPQAVERAI 110 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 GK+ EDK + + R A++TI GC++FCT+C+VPYTRG E S Sbjct: 111 NGKKSA----IFEDKMDEID-YKKILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKS 165 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + +++E L +G+ E+T LGQNV+A+ GK L+ + + + LL +I+ + R+ Sbjct: 166 RKMDDIINEVENLAKSGIKEVTYLGQNVDAY-GKDLN-DGSSLAKLLNLTKDIEEIERIW 223 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TS+P D S + + + +HLPVQ GS++ILK MNRR+T EY ++I+ IR Sbjct: 224 FLTSYPTDFSLDIAHEVANSSKITKNIHLPVQHGSNKILKKMNRRYTIEEYIELINDIRK 283 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVD 383 + PD +ISSD IVGFP ET++DF T++LV I + + YSPR GT E V Sbjct: 284 IVPDASISSDIIVGFPDETEEDFEKTVELVKNIKFERLNLAIYSPREGTIAWKYFEDNVP 343 Query: 384 ENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 +K +R+ L LQK++ +Q N+ + + +E+++E K G GR + + Sbjct: 344 RIIKTKRMAYILNLQKEINKQ---LNENYLNKTVEIIVETKAKS-GLYYGRDIRNKIIAF 399 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V++ LYG+++ Sbjct: 400 EGDKSLIGKKVLVKVKKTTAGPLYGDII 427 >gi|167750510|ref|ZP_02422637.1| hypothetical protein EUBSIR_01486 [Eubacterium siraeum DSM 15702] gi|167656436|gb|EDS00566.1| hypothetical protein EUBSIR_01486 [Eubacterium siraeum DSM 15702] Length = 486 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 158/447 (35%), Positives = 244/447 (54%), Gaps = 23/447 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S+GCQ NV D +++ M GY ADLI+ NTC +RE A ++V+ +G ++ Sbjct: 52 VHSFGCQQNVSDGEKIKGMLAQMGYGFTPETAFADLILFNTCAVRENAEDRVFGNIGALK 111 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELL-ERARF 145 LK ++ +L++ V GC+ Q E + + + P V+++ G + LP+++ E+ Sbjct: 112 KLK----EKNRNLIIAVGGCMVQQEHIAQRMRKSFPQVDIIFGTHVMHTLPQMIYEKLSE 167 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +R + S E L ++ R+ V A + I GC+ FCT+C+VP+ RG E SR Sbjct: 168 NRRTLSIPESDGVIAEGLPVI-----RESKVKASVPIMYGCNNFCTYCIVPFVRGRERSR 222 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +V+ E + LI++G EI LLGQNVN++ GK D F+ LL L +I G +L + Sbjct: 223 RPEEVIAEVKGLINDGYKEILLLGQNVNSY-GKEYD---FGFAKLLSELDKIPGKYKLSF 278 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 TSHP+D + LI D + +LHLPVQ GSDRILK MNR + Y ++I+ + Sbjct: 279 MTSHPKDCTHELIDTIADSRHISYHLHLPVQCGSDRILKEMNRHYDTAHYLELIEYAKKR 338 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P +A+++D IVGFPGET +DF T++L+ K+ Y A++F YS R GT + M + + + Sbjct: 339 IPKVALTTDIIVGFPGETYEDFLGTVELMKKVRYDSAYTFIYSKREGTKAAAMPDPISDE 398 Query: 386 VKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 K + +LL +Q + E+ + +G +EVL E G+ G + G S V N Sbjct: 399 DKGKWFRQLLDVQNSIGEKAY---ERFIGDEVEVLCEGIGRTADGLMTGHSRHGVIVDFN 455 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + VRI + GELV Sbjct: 456 GTRDMIGKYVTVRIQKALPWAVTGELV 482 >gi|242071517|ref|XP_002451035.1| hypothetical protein SORBIDRAFT_05g023010 [Sorghum bicolor] gi|241936878|gb|EES10023.1| hypothetical protein SORBIDRAFT_05g023010 [Sorghum bicolor] Length = 601 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 168/490 (34%), Positives = 253/490 (51%), Gaps = 49/490 (10%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYS-- 82 R + ++YGCQMN+ D + + + GY E V + A++I +NTC IR+ A +KV+ Sbjct: 95 RIYHETYGCQMNINDMEIVLSIMKNDGYDEIVPDPESAEIIFINTCAIRDNAEQKVWQRL 154 Query: 83 ----FLGR--IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 FL R N+ R K + V GC+A+ E+IL +V+VV GP Y L Sbjct: 155 NYFWFLKREWKANVAEGRSKSLRPPKIAVLGCMAERLKEKILDSDKMVDVVCGPDAYRDL 214 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 P LL+ +G + ++T S+E+ + ++ V N VTAF++I GC+ C+FC+VP Sbjct: 215 PRLLQEVDYGHKGMNTLLSLEETYADITPVRISDN---SVTAFVSIMRGCNNMCSFCIVP 271 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLD 241 +TRG E SR +S +V E +L GV E+ LLGQNVN+ W+ Sbjct: 272 FTRGRERSRPVSSIVREVGELWKAGVKEVMLLGQNVNSYNDTSEVEELEPGQNWQLSEGF 331 Query: 242 GEKCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 C F+DLL LS +R R+T+ HP+D D L+ D + +HLP Sbjct: 332 SSMCKVKNMGLRFADLLDRLSLEYPEMRFRFTSPHPKDFPDELLYLMRDRYNICNLIHLP 391 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 Q+GS +L+ M R +T Y +++ +IR+V PD+ +SSDFI GF GET+DD T+ LV Sbjct: 392 AQTGSTAVLERMRRGYTREAYLELVHKIRNVIPDVGLSSDFITGFCGETEDDHAETLSLV 451 Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413 +GY A+ F YS R T N + V E+VK RL+ L RE D+ +G + Sbjct: 452 RAVGYDMAYMFAYSMREKTHAHRNYEDDVPEDVKQRRLMELINTFRETTKKNYDSQIGTV 511 Query: 414 IEVLIEKHGKE--KGKLVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVK 459 VL+E K K +L+G++ V S + +GD ++V+I Sbjct: 512 QLVLVEGPNKRAPKTELIGKTDRGHKVSFASVPIPHTFEGEEARKPVVGDFVEVKILRSS 571 Query: 460 ISTLYGELVV 469 +TL+GE + Sbjct: 572 TATLFGEPIA 581 >gi|229890683|sp|Q7VGP6|MIAB_HELHP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 462 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 158/451 (35%), Positives = 242/451 (53%), Gaps = 25/451 (5%) Query: 26 RFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F+++ GC MN DS M ++ + Y N + ADLI++NTC +REK +K++S + Sbjct: 2 KLFIQTLGCAMNERDSAHMIAELRDKKHYTLTNDIKQADLILINTCSVREKPEKKLFSEI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G K + K G V GC A GEEI++++P V+ V+G + ++ ++LER + Sbjct: 62 GAFAKEKKAGAKIG------VCGCTASHLGEEIIKKAPSVDFVLGARNVSKITQVLERPK 115 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V+ D +D + G G+ A L I GCDK C++C+VP+TRG EIS Sbjct: 116 ----AVEVDIDYDDSTYVFASSQG-----MGIKAHLNISIGCDKKCSYCIVPFTRGKEIS 166 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRL 263 ++ EA+K + +G E+ LLGQNVN + + K F+ LL +LSEI GL R+ Sbjct: 167 VPKDLLISEAKKCVASGAKELLLLGQNVNNYGVRFSHSHPKTNFTQLLRALSEIDGLYRI 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP M D ++ V+ +H+P+QSGS +ILK M R + Y I +++ Sbjct: 227 RFTSPHPLHMDDEFLEEFASNPVIAKGIHIPLQSGSSQILKMMRRGYDKQWYLNRIAKLK 286 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG----SNML 379 S+ P++ I +D IVGFP E++ DF TM+++ + + +SF YSPR T +ML Sbjct: 287 SLVPNVGIGTDIIVGFPTESEQDFEDTMEVLSLVEFDTLYSFVYSPRPHTSAFEYDKSML 346 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWLQS 437 V V ERL LQ +E +G+I VLIE H +G+ GRS + Sbjct: 347 --VSPEVAKERLARLQNLHKEILSKKAQLEIGRIHNVLIENHYNGEGQCWSEGRSSSNKL 404 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + K IG I+KV IT + L G + Sbjct: 405 IKILDKKCEIGSIVKVEITHNEGGGLMGRFI 435 >gi|330836453|ref|YP_004411094.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Spirochaeta coccoides DSM 17374] gi|329748356|gb|AEC01712.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Spirochaeta coccoides DSM 17374] Length = 443 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 148/450 (32%), Positives = 253/450 (56%), Gaps = 19/450 (4%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ +++++YGCQMNV +S +E M G + +S ++AD +LNTC +R+ A +++ Sbjct: 9 PKTYWIETYGCQMNVAESHELETMLQGVGLQPASSAENADCAILNTCSVRKTAENRIWGR 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG +++K R++ ++V GC+A+ EE+++ +P ++ VVG +R+ ELL Sbjct: 69 LGLFQHIKQERLQ-----TLIVTGCMAERLKEELIKEAPAIDHVVGTNDKHRIVELLTGV 123 Query: 144 RFGKRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G ++D Y + + + DG Y ++F+ I GC+ FC++C+VP+ RG E Sbjct: 124 ASGTCLLDGARYEFGETYHK----DGDY------SSFVPIMNGCNLFCSYCIVPFVRGRE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLV 261 ISR+ V++E R+L GV EITLLGQ VN +R K DG F +LL + E+ + Sbjct: 174 ISRNPQAVINEVRRLDSLGVKEITLLGQTVNNYRYKKEDGTFMRFPELLELICVELDSIR 233 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R+ + HPR + LI + +LH+P+QSGS ILK+M R ++ ++ +I Sbjct: 234 WVRFESPHPRFFTRELIDVIARNPRIARHLHIPMQSGSSSILKAMMRDYSREKFLTLIAD 293 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR PD+ ++D +VGFPGET++D+ T+ +D+ +AF + ++PR GT ++ + Sbjct: 294 IREKIPDVTFATDVMVGFPGETEEDYELTLSAMDECRNVEAFMYYWNPREGTKAVDLPDH 353 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVV- 439 V E VK RL L + Q A +G+ ++L+ H + +K L+GR+ VV Sbjct: 354 VPETVKLARLQILIDRQLALQSVEKTARLGKDEDILVTGHSRDDKDALLGRTEHNGMVVF 413 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + + GD+ +VR+ + T G V+ Sbjct: 414 IPYAPLHPGDVARVRLDSLSGGTFRGTHVL 443 >gi|312084023|ref|XP_003144103.1| hypothetical protein LOAG_08525 [Loa loa] gi|307760732|gb|EFO19966.1| hypothetical protein LOAG_08525 [Loa loa] Length = 568 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 164/468 (35%), Positives = 252/468 (53%), Gaps = 46/468 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV D + + S GY + + +AD+++L TC IRE A KV+ L +R + Sbjct: 82 TYGCQMNVNDVELVRSLLLSSGYMETDDVKEADIVLLMTCSIREGAENKVWDELKVLRKI 141 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 R K+G +V V GC+A+ +L + V+VV GP +Y LP LL AR G + Sbjct: 142 ---RRKKG---VVGVLGCMAERVRHNLLTYTENVDVVAGPDSYRDLPRLLAIARCGSMAI 195 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + S+E+ + + V K TAF++I GCD CT+CVVPYTRG E SR ++ + Sbjct: 196 NVQLSLEETYADIVPVRKD---KFSKTAFVSIMRGCDNMCTYCVVPYTRGRERSRPINSI 252 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRG------------------------KGLDGEKCT 246 +DE R L D GV ++TLLGQNVN++R K G + T Sbjct: 253 LDEIRSLSDEGVKQVTLLGQNVNSYRDLSEISFPSACLTEPGTAPGFRTKYKPKKGGR-T 311 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F LL +S+I +R+R+T+ HP+D +I+ + + +HLP QSGS+ +L +M Sbjct: 312 FLTLLDKVSQIDPEMRIRFTSPHPKDFPLEVIQLIKERSNICKQIHLPAQSGSNAVLDAM 371 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 +R ++ Y +++DRI++V P+++++SDFI GF GET++ R ++DL+ + Y+ + F Sbjct: 372 DRGYSRESYLELVDRIKAVLPNVSLTSDFIAGFCGETEESHRESLDLIRHVVYSFCYVFP 431 Query: 367 YSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 YS R T L + V + VK R L RE + N+A VG VL+E+ K Sbjct: 432 YSQREKTKAYRHLKDNVSKEVKNRRHQELANVFRETALKHNEALVGTEQLVLLEETSKRS 491 Query: 426 GK-LVGRSPWLQSVVLNSKNHN---------IGDIIKVRITDVKISTL 463 + L GR +V+++ K +N GD + V+IT TL Sbjct: 492 SEHLRGRIDGGVNVIIH-KYYNDGSELVELKPGDYVAVKITSANSQTL 538 >gi|154149237|ref|YP_001406094.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter hominis ATCC BAA-381] gi|229890468|sp|A7I0Q3|MIAB_CAMHC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|153805246|gb|ABS52253.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter hominis ATCC BAA-381] Length = 429 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 153/445 (34%), Positives = 243/445 (54%), Gaps = 21/445 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++++ GC MNV DS + + Y+ + + ADLI++NTC +REK K++S +G Sbjct: 4 LYLQTLGCAMNVRDSEHIVAELKDE-YKLTDDISKADLILINTCSVREKPVHKLFSEIGA 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 ++ + K G V GC A GEEI ++P V+ V+G + ++ E ++ +F Sbjct: 63 FNKVRKNGSKIG------VCGCTASHLGEEIFNKAPFVDFVLGARNVSKISEAVKTPKF- 115 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + TD + ++ S G R AF+ I GCDK C++C+VP TRG EIS Sbjct: 116 ---ISTDINYDE-----SEFAFGEFRGSPYKAFVNIMIGCDKKCSYCIVPQTRGKEISIP 167 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLVRLR 264 +++EA K + NG EI LLGQNVN + GK EK FSDLL +SEIKG+ R+R Sbjct: 168 AEIILNEASKAVQNGAKEIFLLGQNVNNY-GKFFSSRHEKMDFSDLLVKISEIKGVERIR 226 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP M D + + +H+P+QSGS ++L+ M R + + R+R Sbjct: 227 FTSPHPLHMDDKFLDIFTSNPKICKSMHMPLQSGSTKVLRDMRRGYDKEWFLNRALRLRK 286 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P+++IS+D IV +P E++DDF+ TM++++++ + Q FSFK+SPR T N L +D Sbjct: 287 MCPEVSISTDIIVAYPTESEDDFKDTMEVLNEVKFEQIFSFKFSPRPLTAAEN-LPLIDN 345 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + ++RL LQ + E VG+I +V E+ + G++ GRS V + Sbjct: 346 EIASKRLEILQSRHNEILDEIMKNQVGKIFDVYFEEL-RANGEVAGRSFSNFLVSVKGSE 404 Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469 +G I+ VRI LYG++ Sbjct: 405 DLLGKILPVRIEKASRMVLYGKITA 429 >gi|312876022|ref|ZP_07736011.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor lactoaceticus 6A] gi|311797220|gb|EFR13560.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor lactoaceticus 6A] Length = 434 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 151/440 (34%), Positives = 247/440 (56%), Gaps = 19/440 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ + ++F G+E V+ AD+ V+NTC + + K + + + L Sbjct: 9 GCKVNQYETQAVAELFKENGFEIVDFDSKADVYVINTCTVTNISDRKSRQAIKKAKKLSP 68 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---V 149 I VVV GC Q +E+ + V++++G + R+ + + + K+ Sbjct: 69 QSI-------VVVMGCYPQVYPQEV-EKIEDVDIIIGTKDRQRIVDYVRQYLEDKKKIVA 120 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 +D +Y E FE L I + + + AF+ I+EGCD+FC++C++PY RG SR L Sbjct: 121 IDGEYKRE-AFEELKISEFNEHSR----AFIKIEEGCDQFCSYCIIPYARGAVRSRGLKS 175 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 + +E R+L+ G E + G N++A+ GK LDG K T D++ ++EI+G+ R+R ++ Sbjct: 176 IEEEVRRLVQKGYKEFVITGINISAY-GKDLDG-KVTLIDVIERVNEIEGVKRIRLSSLE 233 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P M+D I+ D L +LHL +QSGSD+ILK MNR +T +Y+ I+DRIR D+ Sbjct: 234 PVIMNDEFIERLLGFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVDRIREKWEDV 293 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 A ++D IVGFPGET++DF AT++ V KIG+++ F++SP+ GT M QVD K Sbjct: 294 AFTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYEMPNQVDSKEKER 353 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNIG 448 R +++ F+ VG +EVLIE+ G G S +++++V S G Sbjct: 354 RSKIMKEVAANLAYQFHKKFVGNWLEVLIEQDSDFDGYYEGYSGNYIRTLVRKSHMIVPG 413 Query: 449 DIIKVRITDVKISTLYGELV 468 +I KV+IT + GE++ Sbjct: 414 EIYKVKITQAYEQYVKGEII 433 >gi|198450948|ref|XP_001358190.2| GA19527 [Drosophila pseudoobscura pseudoobscura] gi|198131266|gb|EAL27327.2| GA19527 [Drosophila pseudoobscura pseudoobscura] Length = 589 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 146/414 (35%), Positives = 228/414 (55%), Gaps = 25/414 (6%) Query: 32 YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 YGCQMN D+ + + GYER ++DADL++L TC +RE A +K+++ L +R +K Sbjct: 105 YGCQMNTNDTEVVWSILKQHGYERCQELEDADLVMLVTCAVREGAEQKIWNRLRHLRAMK 164 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150 R + L + + GC+A+ E +L + V+V+ GP +Y LP LL +R +G + Sbjct: 165 QKRGAKRQPLQLTLLGCMAERLKERLLDQEQCVDVIAGPDSYKDLPRLLAVSRHYGNSAI 224 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + S+++ + + V + TAF++I GCD CT+C+VP+TRG E SR L+ + Sbjct: 225 NVLLSLDETYADVMPVRLNSDSP---TAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASI 281 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------------------FSDLLY 252 V+E R L GV E+TLLGQNVN++R KG T FS+LL Sbjct: 282 VNEVRALQVQGVKEVTLLGQNVNSYRDKGAGQTSDTSLVPGFKTVYKPKTGGIPFSELLQ 341 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 S++E +R+R+T+ HP+D SD +++ D + LHLP QSG+ +L M R +T Sbjct: 342 SVAEAVPEMRIRFTSPHPKDFSDEVLRVIRDYPNVCKQLHLPAQSGNTEVLARMRRGYTR 401 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 Y ++++ IR + P + +SSDFI GF GET+ +F T+ L++ + Y A+ F YS R Sbjct: 402 EAYLELVEHIREILPTVGLSSDFICGFCGETEAEFEDTISLINTVQYNVAYLFAYSMREK 461 Query: 373 TPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 T ++ V VK RL + + R+ + G+ +LIE GK K Sbjct: 462 TTAHRRYVDDVPVAVKTARLQRMVQAFRDGATQLHKNFEGKQQLILIE--GKSK 513 >gi|169349836|ref|ZP_02866774.1| hypothetical protein CLOSPI_00574 [Clostridium spiroforme DSM 1552] gi|169293404|gb|EDS75537.1| hypothetical protein CLOSPI_00574 [Clostridium spiroforme DSM 1552] Length = 428 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 156/432 (36%), Positives = 245/432 (56%), Gaps = 26/432 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S M +F GY+ V+ + AD+ V+NTC + K R + Sbjct: 8 TLGCKVNTYESNAMLKIFNEAGYQEVDFKEIADVYVINTCTVTNTGDSKS-------RQM 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKRV 149 I++ V VAGC +Q EEI + V VV+G Q + + + E + GK V Sbjct: 61 IRKAIRKNPQATVCVAGCYSQIAPEEI-EQIEGVGVVLGTQHRKDIVKYVDEYLKTGKPV 119 Query: 150 VDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + D + KFE L+I +R + AFL IQ+GC+ FCT+C++PY RG SR Sbjct: 120 IKVDNVMNLKKFEDLNI-----DRFKNTRAFLKIQDGCNNFCTYCIIPYARGRVRSRDKD 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V+++A+ L+ NG EI L G + G G D + +F DLL L +I GL RLR ++ Sbjct: 175 SVLNQAKTLVANGYVEIVLTGIHT---AGYGEDLDNYSFYDLLVDLVKIDGLKRLRISSI 231 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +SD +I G D+++ +LH+P+QSG D LK MNR++T +Y + I++IR+ P+ Sbjct: 232 ETSQISDEIINLIGSNDIIVDHLHIPLQSGCDATLKRMNRKYTTSQYLEKINKIRNYLPN 291 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 IA ++D IVGFPGE+D++F T + + ++ Y++ F YS R TP + M +QVD+ +K Sbjct: 292 IAFTTDVIVGFPGESDEEFEETYNFIKEVNYSELHVFPYSLRRNTPAAKMKDQVDDKIKH 351 Query: 389 E---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 E RLL L KKL F +G+I++VL EK ++ LVG + V + + ++ Sbjct: 352 ERVNRLLELSKKLNR---DFALKQIGKILKVLFEK--RDGDYLVGHASDYLKVKVKTTDN 406 Query: 446 NIGDIIKVRITD 457 IG+I++V+I + Sbjct: 407 LIGEIVEVKINN 418 >gi|164686289|ref|ZP_02210319.1| hypothetical protein CLOBAR_02727 [Clostridium bartlettii DSM 16795] gi|164601891|gb|EDQ95356.1| hypothetical protein CLOBAR_02727 [Clostridium bartlettii DSM 16795] Length = 432 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 148/440 (33%), Positives = 242/440 (55%), Gaps = 17/440 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M ++F +GYE+ + D AD+ V+NTC + + K ++ R++ Sbjct: 8 TLGCKVNQYETEAMLELFEKEGYEKAETEDYADVYVINTCTVTHMSDRKSRQYIRRMK-- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K+ D ++ V GC +Q EEIL VN+V+G ++ E +++ ++V Sbjct: 66 -----KKNPDAIIAVVGCYSQVSPEEILSIDE-VNLVMGTNDRKKIVEEVKKIDASRKVS 119 Query: 151 DTDYSVEDK-FERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 D ++ K FE + I N+ G T AF+ IQ+GCD++C++C++PY RG SR L Sbjct: 120 TVDDIMKVKAFEEIEI-----NKTNGKTRAFMKIQDGCDRYCSYCIIPYARGRVRSRDLE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V E L NG E+ L G +V ++ GK + D++ +++I+G+ R+R ++ Sbjct: 175 SIVKEVENLASNGYKEVVLTGIHVASY-GKDIKDSDIKLLDVIKQINDIEGIERIRLSSV 233 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P +D ++A +D + P+ HL +QSG D LK M RR+T EY+ I+DR+R+ P+ Sbjct: 234 EPILFTDEFVEAVSTMDKVCPHYHLSLQSGCDETLKRMKRRYTTEEYKAIVDRLRAAIPN 293 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I++D IVGFPGET+++F T + + I FKYSPR GTP + M QVD + K Sbjct: 294 VSITTDVIVGFPGETNEEFDKTYEFLKDIELTHMHVFKYSPRKGTPAATMENQVDPSTKH 353 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 +R L + E F + + VL E+ + K G + V++ S N Sbjct: 354 DRSEKLLQLNEENFNKFGQKMLDKEFNVLFEQKVGD-NKYEGLTENYVKVIVESDNDISE 412 Query: 449 DIIKVRITDVKISTLYGELV 468 I+KV+I DVK L G LV Sbjct: 413 QILKVKIKDVKNEFLEGILV 432 >gi|194224319|ref|XP_001500825.2| PREDICTED: CDK5 regulatory subunit associated protein 1 [Equus caballus] Length = 539 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 136/375 (36%), Positives = 218/375 (58%), Gaps = 25/375 (6%) Query: 18 VDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 VDQ + QR ++++YGCQMNV D+ + GY R N++ +AD+I+L TC IREKA Sbjct: 94 VDQLLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTNNLQEADVILLVTCSIREKA 153 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 + +++ L ++R LK R + L + + GC+A+ EEIL R IV+++ GP Y L Sbjct: 154 EQTIWNRLHQLRALKTKRPRSRVPLRIGILGCMAERLKEEILNREKIVDILAGPDAYRDL 213 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 P LL A G++ + S+++ + + V + +AF++I GCD C++C+VP Sbjct: 214 PRLLAVAESGQQAANVLLSLDETYADIMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVP 270 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLD 241 +TRG E SR ++ +V+E RKL + G+ E+TLLGQNVN++R +G Sbjct: 271 FTRGRERSRPVASIVEEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAMSTSLSRGFS 330 Query: 242 GEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295 T F+ LL +S I +R+R+T+ HP+D D +++ + D + +H+P Sbjct: 331 TNYKTKQGGLRFAHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHVPA 390 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355 QSGS R+L++M R ++ Y ++I IR P +++SSDFI GF GET++D T+ L+ Sbjct: 391 QSGSSRVLEAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLR 450 Query: 356 KIGYAQAFSFKYSPR 370 ++ Y F F YS R Sbjct: 451 EVQYNMGFLFAYSMR 465 >gi|115486105|ref|NP_001068196.1| Os11g0592800 [Oryza sativa Japonica Group] gi|110832794|sp|Q2R1U4|CK5P1_ORYSJ RecName: Full=CDK5RAP1-like protein gi|77551766|gb|ABA94563.1| CDK5RAP1, putative, expressed [Oryza sativa Japonica Group] gi|113645418|dbj|BAF28559.1| Os11g0592800 [Oryza sativa Japonica Group] gi|215694718|dbj|BAG89909.1| unnamed protein product [Oryza sativa Japonica Group] gi|222616254|gb|EEE52386.1| hypothetical protein OsJ_34478 [Oryza sativa Japonica Group] Length = 600 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 166/498 (33%), Positives = 259/498 (52%), Gaps = 65/498 (13%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 R + ++YGCQMNV D + + ++GY E V + A++I +NTC IR+ A +KV+ L Sbjct: 94 RIYHETYGCQMNVNDMEIVLSIMKNEGYDEIVPDPESAEIIFINTCAIRDNAEQKVWQRL 153 Query: 85 ----------------GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128 GR R+L+ +I V GC+A+ E+IL +V+VV Sbjct: 154 NYFWFLKRQWKANVAAGRSRSLRPPKI--------AVLGCMAERLKEKILDSDKMVDVVC 205 Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188 GP Y LP LL+ +G++ ++T S+E+ + ++ V N VTAF++I GC+ Sbjct: 206 GPDAYRDLPRLLQEVDYGQKGINTLLSLEETYADITPVRISDN---SVTAFVSIMRGCNN 262 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR----------GK 238 C+FC+VP+TRG E SR +S +V E +L GV E+ LLGQNVN++ GK Sbjct: 263 MCSFCIVPFTRGRERSRPVSSIVREVGELWKAGVKEVMLLGQNVNSYNDTSEVEELEPGK 322 Query: 239 GLD-----GEKCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286 + C F+DLL LS +R R+T+ HP+D D L+ D Sbjct: 323 NWELSEGFSSMCKVKNMGLRFADLLDQLSLEYPEMRFRFTSPHPKDYPDELLYLMRDRHN 382 Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 + +H+P QSGS +L+ M R +T Y +++ +IRS+ PD+ +SSDFI GF GET+++ Sbjct: 383 VCKLIHMPAQSGSSAVLERMRRGYTREAYLELVQKIRSIIPDVGLSSDFISGFCGETEEE 442 Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSF 405 T+ LV +GY A+ F YS R T N ++ V ++VK RL L RE Sbjct: 443 HAETLTLVRAVGYDMAYMFAYSMREKTHAHRNYVDDVPDDVKQRRLAELISTFRETTAKI 502 Query: 406 NDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVLNS------------KNHNIGDII 451 D+ VG + VL+E K + +++G++ V S + +GD I Sbjct: 503 YDSQVGTVQLVLVEGPNKRAPETEMIGKTDRGHRVSFASVPVPHTFEGDELRKPVVGDFI 562 Query: 452 KVRITDVKISTLYGELVV 469 +V+IT ++L G+++ Sbjct: 563 EVKITKSSTASLSGDVIA 580 >gi|47227354|emb|CAF96903.1| unnamed protein product [Tetraodon nigroviridis] Length = 522 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 141/417 (33%), Positives = 231/417 (55%), Gaps = 25/417 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + ++YGCQMNV D+ + +GY+R + AD+++L TC IREKA + +++ L Sbjct: 56 RKVYFETYGCQMNVNDTEIAWSILQKKGYQRTFDLSQADVVLLVTCSIREKAEQTIWNRL 115 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ +K R+K + + + GC+A+ E+L R +V+++ GP Y LP LL A Sbjct: 116 QQLTAMKRRRLKSQTPMKIGILGCMAERLKTELLEREKLVDILAGPDAYRDLPRLLAVAD 175 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ + S+E+ + + V ++ + +A+++I GCD CT+C+VP+TRG E S Sbjct: 176 GGQQASNVLLSLEETYADIMPV---HHAPQAYSAYVSIMRGCDNMCTYCIVPFTRGRERS 232 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG---LDGEKCT--------------- 246 R + +++E +L D GV E+TLLGQNVN++R G + T Sbjct: 233 RPVRSILEEVSQLSDQGVKEVTLLGQNVNSYRDTSHEQFGGTELTQLSRGFQTVYRTKQG 292 Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 FSDLL +S I +R+R+T+ HP+D D +++ + + +HLP QSGS +IL Sbjct: 293 GLRFSDLLDQVSRIDPDMRIRFTSPHPKDFPDEVLQLIAERKNICQQIHLPAQSGSSKIL 352 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 K+M R +T Y ++ I+ + P +++SSDFI GF GE ++D + T+ L+ ++GY F Sbjct: 353 KAMRRGYTREAYLDLVKNIKKIIPGVSLSSDFISGFCGEKEEDHQQTLSLIREVGYNVGF 412 Query: 364 SFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 F YS R T + L+ V VK RL RE+ N A V VL+E Sbjct: 413 LFAYSMRKKTQAFHRLQDDVPAEVKRRRLEECIGVFREEAARVNGALVRSTQLVLVE 469 >gi|157132304|ref|XP_001655989.1| radical sam proteins [Aedes aegypti] gi|108881684|gb|EAT45909.1| radical sam proteins [Aedes aegypti] Length = 573 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 159/477 (33%), Positives = 250/477 (52%), Gaps = 44/477 (9%) Query: 8 IGVAHMVSQIVDQCIVPQ--------RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59 +G H V + VD +P+ + F + YGCQMN D+ + + S ++R ++ Sbjct: 59 VGDVHQVERSVDIPYLPRESLLGQKRKVFFEIYGCQMNTNDTEIVWSILKSHDFQRTGNI 118 Query: 60 DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119 DAD+++L TC IR+ A +++ L IR +K R E L + V GC+A+ ++++ Sbjct: 119 KDADVVLLMTCAIRDGAESTIWNRLKHIRLMKGKR-DEAKPLQIGVLGCMAERLKKQLVE 177 Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179 + V+VV GP +Y LP LL + G++ ++ S+++ + + V +RK TA+ Sbjct: 178 KEQAVDVVAGPDSYKDLPRLLAVGQSGQKAINVMLSLDETYADVMPVK--LDRK-SRTAY 234 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 ++I GCD C++C+VP+TRG E SR +S + EA L D G+ EITLLGQNVN++R Sbjct: 235 VSIMRGCDNMCSYCIVPFTRGRERSRPISSIRKEALNLQDKGIKEITLLGQNVNSYR--- 291 Query: 240 LDGEKCT--------------------------FSDLLYSLSEIKGLVRLRYTTSHPRDM 273 D +C+ F++LL L+ +R+R+T+ HP+D Sbjct: 292 -DTSECSEDTEKQASILAPGFKTVYKTKIGGLRFAELLMDLAVTVPEMRIRFTSPHPKDF 350 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 + +++ + LHLP QSGS +L+ M R +T Y +ID +RS+ PD+ +SS Sbjct: 351 PNAVLETIAKYPNICNSLHLPAQSGSSSVLERMRRGYTREAYLNLIDEVRSLIPDVTLSS 410 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLL 392 DFI GF GETD++F T+ L+ ++ Y AF F YS R T E V E K +RL Sbjct: 411 DFICGFCGETDEEFSETISLIRQVKYHTAFLFAYSMREKTTAHRRYEDDVPEEKKQQRLR 470 Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNIG 448 + R N VG+ VL+E K K L GR+ V+L S + +G Sbjct: 471 EMIAAFRAGAEQLNRQFVGREELVLVEGLSKRSKDDLSGRNDGNIKVILPSGDVPMG 527 >gi|156743179|ref|YP_001433308.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Roseiflexus castenholzii DSM 13941] gi|156234507|gb|ABU59290.1| RNA modification enzyme, MiaB family [Roseiflexus castenholzii DSM 13941] Length = 480 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 157/449 (34%), Positives = 242/449 (53%), Gaps = 27/449 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R++V + GCQMNV DS R+E GY +DA IVLN+C +R A E++ L Sbjct: 26 RRYYVWTVGCQMNVSDSERLEAALQGVGYAPAERPEDASFIVLNSCSVRASAEERILGKL 85 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR-RSPIVNVVVGPQTYYRLPELLERA 143 ++ +K + D +V+ GC+ + I + R P+V+ V P + E+L A Sbjct: 86 SEVQRIK----RNHPDTKIVLWGCMVGPGNQSIFQSRLPMVDHFVSPSA---VDEVLALA 138 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + Y +++ ++ D V+ + IQ GC+ C+FCV+P RG E Sbjct: 139 ------PNPIYQLDEPALPVARWD-----HPPVSVHVPIQYGCNMSCSFCVIPLRRGRER 187 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR L+++V+E R+++ G EITLLGQ V++W G L G + +DLL ++ EI GL+RL Sbjct: 188 SRPLAEIVEECRRIVARGAKEITLLGQIVDSW-GHDLPG-RPDLADLLRAVHEIPGLLRL 245 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP M+D LI A +L MP ++LPVQ+G D +LK M R +T YR++I +IR Sbjct: 246 RFLTSHPAWMTDRLIAAVAELPRCMPDINLPVQAGDDALLKIMRRGYTVQRYRELIAKIR 305 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM----L 379 P +++++D IVG PGET + F T L+D+I + + +SPR GT + M Sbjct: 306 DAIPHVSLTTDVIVGHPGETRERFEGTKRLLDEIRFDKVHIAAFSPRPGTRAAEMELDPA 365 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 V E K R + L++ + N + Q +EVL+E G+ KGK GR+P + V Sbjct: 366 LAVPEGEKQLRRIELERIQEQIATERNARFLNQTVEVLVE--GEHKGKWRGRTPGNKLVF 423 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + G ++ VRI +L G L Sbjct: 424 FSDPRDRTGQLVNVRIIHTGPWSLQGVLA 452 >gi|210623865|ref|ZP_03294100.1| hypothetical protein CLOHIR_02051 [Clostridium hiranonis DSM 13275] gi|210153291|gb|EEA84297.1| hypothetical protein CLOHIR_02051 [Clostridium hiranonis DSM 13275] Length = 432 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 152/442 (34%), Positives = 247/442 (55%), Gaps = 21/442 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M ++F GYE V S + AD+ V+NTC + + K ++ R++ Sbjct: 8 TLGCKVNQYETEAMIELFEHAGYEHVQSEEYADVYVINTCTVTHMSDRKSRQYIRRVK-- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K+ + ++ V GC +Q EEIL VN+V+G + E +E +V Sbjct: 66 -----KKNPNSVIAVVGCYSQVAPEEILDIEE-VNLVMGTNDRRHIVEKVEAVTCNDKVS 119 Query: 151 DTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 D ++ K FE + I R R AF+ IQ+GCD+FCT+C++PY RG SR L Sbjct: 120 TVDDIMKVKEFEEIEITQTN-GRTR---AFMKIQDGCDRFCTYCIIPYARGRVRSRDLDN 175 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 +V+E + L G E+ L G +V ++ GK + ++ D++ +++EI G+ R+R ++ Sbjct: 176 IVEEVKLLASKGYKEVVLTGIHVASY-GKDIKDKEVKLLDVIKAVNEIDGIERIRTSSVE 234 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P +D ++ ++ + P+ HL +QSG D L MNRR+T EY++I+DR+R PD+ Sbjct: 235 PILFTDEFVEEISKMNKVCPHFHLSLQSGCDATLDRMNRRYTTKEYKEIVDRLREKMPDV 294 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK-- 387 AI++D IVGFPGET+++F+ T + + I AQ FKYSPR GTP + M Q+D VK Sbjct: 295 AITTDVIVGFPGETNEEFKQTYEFLKDIELAQMHIFKYSPRKGTPAAKMDNQIDPQVKHM 354 Query: 388 -AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 +E+L+ L K ++ F + +G+ ++VL E+ K G G + V S+ Sbjct: 355 RSEQLISLSKNNFDK---FAERFIGREMDVLFEETTK-SGNYEGLTMNYMRVEAPSEEDI 410 Query: 447 IGDIIKVRITDVKISTLYGELV 468 G I KV+IT +K + G L+ Sbjct: 411 SGQIRKVKITGIKEDYVEGVLI 432 >gi|21902527|ref|NP_663773.1| CDK5 regulatory subunit-associated protein 1 [Rattus norvegicus] gi|32129430|sp|Q9JLH6|CK5P1_RAT RecName: Full=CDK5 regulatory subunit-associated protein 1; AltName: Full=CDK5 activator-binding protein C42 gi|7330738|gb|AAF60223.1|AF177477_1 CDK5 activator-binding protein [Rattus norvegicus] gi|45219720|gb|AAH66666.1| Cdk5rap1 protein [Rattus norvegicus] gi|149030944|gb|EDL85971.1| CDK5 regulatory subunit associated protein 1, isoform CRA_a [Rattus norvegicus] gi|149030945|gb|EDL85972.1| CDK5 regulatory subunit associated protein 1, isoform CRA_a [Rattus norvegicus] Length = 586 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 156/479 (32%), Positives = 252/479 (52%), Gaps = 38/479 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREKA + +++ L Sbjct: 97 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 156 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++ LK R + L + + GC+A+ EIL R +V+++ GP Y LP LL Sbjct: 157 HQLKVLKAKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVE 216 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ + S+++ + + V + +AF++I GCD C++C+VP+TRG E S Sbjct: 217 SGQQAANVLLSLDETYADIMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 273 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------------------ 246 R ++ ++DE RKL + G+ E+TLLGQNVN++R T Sbjct: 274 RPVASILDEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFSSTGSANLSRGFTTNYKPKQG 333 Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 FS LL +S I +R+R+T+ HP+D D +++ + + +HLP QSGS R+L Sbjct: 334 GLRFSHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVL 393 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 ++M R ++ Y ++ IR P + +SSDFI GF GET+DD T+ L+ ++ Y F Sbjct: 394 EAMRRGYSREAYVALVHHIREAIPGVGLSSDFITGFCGETEDDHLQTVSLLREVQYNTGF 453 Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 F YS R T + L + V E VK RL L RE+ N VG VL+E Sbjct: 454 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEASKVNATSVGCTQLVLVEGFS 513 Query: 423 KEKGK-LVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKISTLYGELV 468 K L GR+ L+ + +++ +I GD + V+I TL G ++ Sbjct: 514 KRSTTDLCGRNDANLKVIFPDAEVEDITDPGLKVRAQPGDYVLVKIISASSQTLKGHIL 572 >gi|281339290|gb|EFB14874.1| hypothetical protein PANDA_006744 [Ailuropoda melanoleuca] Length = 567 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 153/448 (34%), Positives = 243/448 (54%), Gaps = 36/448 (8%) Query: 18 VDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 VD+ + QR ++++YGCQMNV D+ + GY R ++ +AD+I+L TC IREKA Sbjct: 88 VDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTRNLQEADVILLVTCSIREKA 147 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 + +++ L +++ LK R++ L + + GC+A+ EEIL R +V+++ GP Y L Sbjct: 148 EQTIWNRLHQLKALKTKRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDL 207 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 P LL A G++ + S+++ + + V + +AF++I GCD C++C+VP Sbjct: 208 PRLLAVAESGQQAANVLLSLDETYADVMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVP 264 Query: 197 YTRGIEISRSLSQVVDEARKLIDN---------GVCEITLLGQNVNAWR----------- 236 +TRG E SR + +++E RKL + G+ E+TLLGQNVN++R Sbjct: 265 FTRGRERSRPVDSILEEVRKLSEQVKSCLGFCLGLKEVTLLGQNVNSFRDSSEVQFNNAV 324 Query: 237 ----GKGLDGE------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286 +G F+ LL +S I +R+R+T+ HP+D D +++ + D Sbjct: 325 STNLSRGFSTNYKPKQGGLRFAHLLDKVSRIDPEMRIRFTSPHPKDFPDEVLQLIQERDN 384 Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 + +HLP QSGS R+L++M R ++ Y ++I IR P +++SSDFI GF GET++D Sbjct: 385 ICKQIHLPAQSGSSRVLEAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEED 444 Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSF 405 T+ L+ ++ Y F F YS R T + L + V E VK RL L RE+ Sbjct: 445 HLQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKA 504 Query: 406 NDACVGQIIEVLIEKHGKEKGK-LVGRS 432 N A VG VL+E K L GR+ Sbjct: 505 NMASVGCTQLVLVEGVSKRSATDLCGRN 532 >gi|195571987|ref|XP_002103982.1| GD20720 [Drosophila simulans] gi|194199909|gb|EDX13485.1| GD20720 [Drosophila simulans] Length = 583 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 152/470 (32%), Positives = 247/470 (52%), Gaps = 39/470 (8%) Query: 32 YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 YGCQMN D+ + + GY R ++AD+I+L TC +R+ A +++++ L +R +K Sbjct: 99 YGCQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIWNRLKHLRAMK 158 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150 N R L + + GC+A+ E++L + V+V+ GP +Y LP LL +R +G + Sbjct: 159 NKRSTRRHPLQLTLLGCMAERLKEKLLDQEQCVDVIAGPDSYKDLPRLLAISRHYGNSAI 218 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + S+++ + + V TAF++I GCD CT+C+VP+TRG E SR L+ + Sbjct: 219 NVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASI 275 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---------------------CTFSD 249 V E + L + GV E+TLLGQNVN++R + E+ F+ Sbjct: 276 VAEVKALAEQGVKEVTLLGQNVNSYRDRSAQEEQEPLKATAVPGFSTVYKPKTGGTPFAA 335 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL S+++ +R+R+T+ HP+D SD +++ D + LHLP QSG+ ++L+ M R Sbjct: 336 LLRSVAQAVPEMRIRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLERMRRG 395 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 ++ Y +++ IR PD+ +SSDFI GF GET+++F+ T+ L+ ++ Y A+ F YS Sbjct: 396 YSREAYLELVQHIRQFLPDVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAYLFAYSM 455 Query: 370 RLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGK 427 R T + V NVK ERL + + RE + GQ +LIE K + Sbjct: 456 REKTTAHRRFKDDVPINVKNERLRRMVQIFREGATQLHRKMEGQEQLILIEGKSKRSDSH 515 Query: 428 LVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVKISTLYG 465 GR+ V++ S K+ +GD + VRI + L G Sbjct: 516 WFGRNDANIKVIVPSIEVPISGDSSARKSFGVGDFLAVRIEESNSQVLKG 565 >gi|15644897|ref|NP_207067.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter pylori 26695] gi|2501535|sp|P56131|MIAB_HELPY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|2313364|gb|AAD07337.1| conserved hypothetical ATP-binding protein [Helicobacter pylori 26695] Length = 437 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 146/435 (33%), Positives = 240/435 (55%), Gaps = 19/435 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ N ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETNDPKTADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264 + ++ EA KL +NG E+ LLGQNVN + + + K FSDLL LSEI+G+ R+R Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R+++ Sbjct: 228 FTSPHPLHMNDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441 V + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEVT 407 Query: 442 SK-NHNIGDIIKVRI 455 K N G+++KV I Sbjct: 408 CKEKRNPGELVKVEI 422 >gi|57233882|ref|YP_182095.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dehalococcoides ethenogenes 195] gi|123618318|sp|Q3Z6Q4|MIAB_DEHE1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|57224330|gb|AAW39387.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dehalococcoides ethenogenes 195] Length = 418 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 157/447 (35%), Positives = 244/447 (54%), Gaps = 42/447 (9%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ + GCQMN +S R+ +F GY + +DA+L+++N+C +RE A KV + L Sbjct: 4 YYLWTIGCQMNQAESERLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVINRLHI 63 Query: 87 IRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +R LK N R+K + + GC+ + + ++ P V+ + P LP+ E Sbjct: 64 LRKLKDKNPRLK------IALTGCLVGQDIASVRKKFPFVDYIFQPGA---LPDWGE--- 111 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G+ K V+A +TI +GCD FCT+C+VPY RG E Sbjct: 112 ---------------------IPEGFILPLKPPVSASITIMQGCDNFCTYCIVPYRRGRE 150 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SRS+S++ EA +L+ G E+ LLGQNV+++ G L + C +DLLY+LS+I GL+R Sbjct: 151 KSRSISELCCEAAELVRRGSREVVLLGQNVDSY-GHDLPEKPC-LADLLYALSDIPGLLR 208 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHP+D+S LI A L + L LPVQ+G+D IL +M R +T+ +YR+++ R+ Sbjct: 209 IRFLTSHPKDISQKLIDAMASLHKVCHSLSLPVQAGADTILAAMRRGYTSEQYRELVGRL 268 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381 ++ PDI++ +D IVGFP ET + F + L+ IGY YSPR T + +M + Sbjct: 269 KTAMPDISLQTDLIVGFPSETAEQFDQSYKLMSDIGYDAIHVAAYSPRPQTAAARDMADD 328 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V K RL ++ +E N A V EVL+E G++K K GR+ + V L Sbjct: 329 VPVAEKKRRLKLIEDLQKETVSKANSALVDTFAEVLVE--GRQKNKWQGRTLGGKLVFLE 386 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 S G +I V+I +L +LV Sbjct: 387 SDLPLEGCLINVKIFKASPWSLQAKLV 413 >gi|313143333|ref|ZP_07805526.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128364|gb|EFR45981.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 441 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 155/441 (35%), Positives = 247/441 (56%), Gaps = 25/441 (5%) Query: 36 MNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN DS + ++ + Y ++ +ADLI++NTC +REK +K++S +G+ K S Sbjct: 1 MNERDSAHIIAELKEKKQYTLTDNAKEADLILINTCSVREKPEKKLFSEIGQFAKEKKSG 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154 K G + GC A GEEI++++P V+ V+G + ++ ++L+R + V+ D Sbjct: 61 AKIG------ICGCTASHLGEEIIKKAPSVDFVLGARNVSKITQVLDRPK----AVEVDI 110 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 +D S ++ G+ A L I GCDK C++C+VP+TRG EIS + +V+EA Sbjct: 111 DYDD-----STYVFASSQDMGIKAHLNISIGCDKKCSYCIVPFTRGKEISIPIDLLVNEA 165 Query: 215 RKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 +KL+ NG E+ LLGQNVN + + +K F++LL +LSEI+GL R+R+T+ HP M Sbjct: 166 KKLVANGAKELLLLGQNVNHYGVRFSTPHKKTNFTELLATLSEIEGLYRIRFTSPHPLHM 225 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 D ++ + +H+P+QSGS +ILK M R + Y I +++S+ P++ I + Sbjct: 226 DDEFLEEFARNPKIAKGIHIPLQSGSSQILKMMRRGYDKQWYLDRIAKLKSLLPNVGIGT 285 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG----SNMLEQVDENVKAE 389 D IVGFP E++ DF TM+++ + + +SF YSPR T +ML V + V E Sbjct: 286 DIIVGFPTESEQDFEDTMEVLSIVEFDTLYSFVYSPRPHTSAYSYDKSML--VPQEVAKE 343 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWLQSVVLNSKNHNI 447 RL LQ ++ +G I EVLIE H ++G+ GRS + + + + I Sbjct: 344 RLSRLQNLHKQILQKKAQKEIGSIYEVLIENHRDDEGQTWSEGRSSQNKLIKILGRKCPI 403 Query: 448 GDIIKVRITDVKISTLYGELV 468 G II+V++T LYGE V Sbjct: 404 GSIIQVKVTHNDGGGLYGEFV 424 >gi|221632382|ref|YP_002521603.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermomicrobium roseum DSM 5159] gi|221157157|gb|ACM06284.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermomicrobium roseum DSM 5159] Length = 458 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 157/464 (33%), Positives = 245/464 (52%), Gaps = 18/464 (3%) Query: 5 IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64 ++LI + + IVD +RF + + GCQMN +S + + GY DAD+ Sbjct: 1 MQLIQLQPAPASIVDAVPGVKRFHIWTIGCQMNEAESAKAAALLRQAGYVPAVREWDADI 60 Query: 65 IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124 +++NTC +R++A +K ++G + LK R D+ + V GC+ + + R P V Sbjct: 61 VIVNTCVVRQQAEDKALGYIGALARLKRRR----PDVRIAVTGCLVTGQERRLAERFPWV 116 Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184 ++ GP + RL L+ + D D D E D G VTAF+ + Sbjct: 117 DLWYGPSEFERLVSLV------PELADVDI---DLVELPHYYDEGQADPE-VTAFVPVIY 166 Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244 GC+ C++C+VPY RG E SR + QVV E KL GV E+TLLGQ VNA+ G L G+ Sbjct: 167 GCNFVCSYCIVPYRRGRERSRPVEQVVAEVEKLAARGVREVTLLGQTVNAY-GHDLPGQP 225 Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 +DLL + ++ G+ R+R+ TSHP+ SD LI+A DL + +++LPVQSG + +L+ Sbjct: 226 -DLADLLERVHDVPGIERIRFLTSHPKYFSDKLIRAVADLPKVCEHVNLPVQSGDNEVLR 284 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 M R +T EYR+ I RIR + PD+ +S+D IVGFPGET++ F T L+++I + + Sbjct: 285 RMRRHYTVEEYRERIARIRELIPDVTLSTDIIVGFPGETEEQFLNTYRLLEEIRFDKVHV 344 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 YSPR GT + + V K R +++ N+ VG+ +E+L++ + Sbjct: 345 AMYSPRPGTLSARWPDDVPREEKRRRHRAVEQLQERIARERNERYVGRTVEILVDGLARG 404 Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + R L V + G ++VR+T L GE V Sbjct: 405 RWRGRTRGNTL--VFFEAPGDWRGRFVEVRVTQASPWYLLGEPV 446 >gi|145343353|ref|XP_001416312.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576537|gb|ABO94605.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 492 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 166/486 (34%), Positives = 251/486 (51%), Gaps = 56/486 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++++YGCQMNV DS + + + G + +A ++NTC +R+ A +V++ Sbjct: 1 RVYIETYGCQMNVSDSDVVRSVLRAHGVATTEDLREATAALVNTCAVRDNAESRVWT--- 57 Query: 86 RIRNLKNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R+R LK + G L V V GC+A+ ++L + ++V GP Y +P LLE + Sbjct: 58 RLRQLKALKRDAGHALTTVGVLGCMAERLKAKLLETEDLADLVCGPDAYRDVPRLLENS- 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-------TAFLTIQEGCDKFCTFCVVPY 197 +R+ +D S E + L +D Y R V A++++ GCD C FCVVP+ Sbjct: 117 -TRRL--SDLSEEHRMNVLLSLDETYADVRPVRRDVGSPMAYVSVMRGCDNMCAFCVVPF 173 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR------------------GKG 239 TRG E SR VVDEAR LI GV EITLLGQNVN++ KG Sbjct: 174 TRGRERSRPFESVVDEARGLIAEGVKEITLLGQNVNSYADAPMKATTSADDDPFAAYAKG 233 Query: 240 L--------DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 +G + TF+DL+ +++ + VR+R+T+ HP+D D L++ + L Sbjct: 234 FKSVYKPKREGAR-TFADLISAVAGLDQEVRVRFTSPHPKDFPDDLLRVIAQTPNVCKQL 292 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 H+P QSGS L+ M R +T Y +I R R + P +A+SSDFI GF GET+D+ T+ Sbjct: 293 HMPAQSGSTSTLERMRRGYTREVYLDLIKRAREMIPGVALSSDFISGFCGETEDEHAETL 352 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410 L++ + Y QAF F YS R T + N+ + V E+VK RL + R + + N A V Sbjct: 353 SLLEDVRYEQAFMFHYSLREKTHAARNLEDDVPEHVKKRRLAEVIATFRRRALEANAAEV 412 Query: 411 GQIIEVLIEKHGKE--KGKLVGRSPWLQSVVLNSKNH-----------NIGDIIKVRITD 457 G+ VL+E K+ + ++ GRS + VV+ K GD + R+ + Sbjct: 413 GRTHLVLVEGASKKDPEAQMSGRSDTGKRVVIQGKRAFSNSSGKEVDIKAGDYVVARVVE 472 Query: 458 VKISTL 463 STL Sbjct: 473 AGASTL 478 >gi|118402077|ref|XP_001033358.1| RNA modification enzyme, MiaB family [Tetrahymena thermophila] gi|89287706|gb|EAR85695.1| RNA modification enzyme, MiaB family [Tetrahymena thermophila SB210] Length = 604 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 144/452 (31%), Positives = 241/452 (53%), Gaps = 40/452 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++F+++YGCQMN D+ + + G+ R +++D+AD++ LNTC IRE A K++ Sbjct: 76 KKYFIETYGCQMNESDTEIISGILQKAGFVRESNLDNADIVFLNTCAIREGAENKIWK-- 133 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-- 142 R+ N++ + KE L+ V GC+A+ ++++ ++ +V+++VGP Y LP L++ Sbjct: 134 -RLENIRAYKRKEKKQLITGVLGCMAERLKDKLVEKNKVVDIIVGPDAYRDLPRLIQSLD 192 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 ++ S+E+ + + V + AF++I GC+ C+FC+VP+TRG E Sbjct: 193 PSTDDYSINVQLSLEETYADIVPVRQNPD---SCQAFVSIMRGCNNMCSFCIVPFTRGRE 249 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK------------------------ 238 SR + +V+E + L + GV EITLLGQNVN++ K Sbjct: 250 RSRDIQSIVEEVKMLANQGVKEITLLGQNVNSYFDKEAEGYEDLDHLNSEGFKETFKLRK 309 Query: 239 -------GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 L G+ F+ LL +++ VR R+T+ HP+D D +++ + L Sbjct: 310 VIRALLNSLLGKGARFAHLLEEVAKAAPEVRFRFTSPHPKDFPDPVLQVIKKYPNIAKNL 369 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 H+P QSG+ +L M R ++ Y ++D I+ P I +SSDFI GF GETD +F+ T+ Sbjct: 370 HMPAQSGNTEMLTRMRRNYSRENYINLVDHIKQTIPGITLSSDFICGFCGETDQEFQDTL 429 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410 L++ + Y AF F YS R T + + V E VK +RL + + Q N V Sbjct: 430 TLLEYVKYENAFLFAYSLREKTHAHRHYQDDVPEEVKKQRLQQMIDVFHKNQELVNKQEV 489 Query: 411 GQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 G+I VL+E GK + ++ GR+ + V+ NS Sbjct: 490 GRIHLVLVEGKGKFENQIRGRTDTNKRVIFNS 521 >gi|224094881|ref|XP_002310277.1| predicted protein [Populus trichocarpa] gi|222853180|gb|EEE90727.1| predicted protein [Populus trichocarpa] Length = 623 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 167/497 (33%), Positives = 260/497 (52%), Gaps = 52/497 (10%) Query: 22 IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEK 79 I+P+ R + ++YGCQMNV D + + + GY E V+ + A++I +NTC IR+ A +K Sbjct: 110 ILPRGRIYHETYGCQMNVNDMEIVLSIMKNAGYSEIVDVPESAEIIFINTCAIRDNAEQK 169 Query: 80 VYS------FLGR--IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131 V+ FL R N+ R + VVV GC+A+ ++IL +V+VV GP Sbjct: 170 VWQRLNYFWFLKRHWKSNVAIGRSQSHHPPKVVVLGCMAERLKDKILDADKMVDVVCGPD 229 Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 Y LP LLE +G++ ++T S+E+ + +S V N + AF+++ GC+ C+ Sbjct: 230 AYRDLPRLLEEVEYGQKGINTLLSLEETYADISPVRISKN---SINAFVSVMRGCNNMCS 286 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--------------G 237 FC+VP+TRG E SR + +V E +L GV E+TLLGQNVN++ Sbjct: 287 FCIVPFTRGRERSRPVESIVKEVAELWKEGVKEVTLLGQNVNSYNDASEIEKEVEPGTNW 346 Query: 238 KGLDGEKCT---------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288 K DG T FSDLL LS +R RYT+ HP+D D L+ + + Sbjct: 347 KYSDGFSSTCKVKRVGLRFSDLLDRLSTEFPEMRFRYTSPHPKDFPDDLLYVMRNRHNIC 406 Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348 +HLP Q+GS +L+ M R +T Y ++ +IR + PD+ I+SDFI GF GET+++ + Sbjct: 407 KSIHLPAQTGSSTVLERMRRGYTREAYLDLVQKIRRIIPDVGITSDFICGFCGETEEEHQ 466 Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFND 407 T+ LV +GY A+ F YS R T N ++ V + VK RL L + RE D Sbjct: 467 DTLSLVKAVGYDMAYMFAYSMREKTHAHRNYVDDVPDEVKKRRLAELIEAFRESTGQCFD 526 Query: 408 ACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVLN-------------SKNHNIGDIIK 452 + +G + VL+E K +L+G+S V+ ++N +GD ++ Sbjct: 527 SQIGSVQLVLVEGPNKRAPDTELIGKSDRGHRVLFTNLPLPNRNEDGSQARNPMVGDYVE 586 Query: 453 VRITDVKISTLYGELVV 469 V I ++L+G+ + Sbjct: 587 VLILKSTRASLFGDALA 603 >gi|289675772|ref|ZP_06496662.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. syringae FF5] Length = 267 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 126/274 (45%), Positives = 179/274 (65%), Gaps = 11/274 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + ++++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + VD + +KF+ L R G +A++++ EGC K+CTFCVVPYTRG E Sbjct: 119 RVTRLPQVDVSFPEIEKFDHLP-----EPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR V+ E L +NGV E+TLLGQNVN +RG DG +DL+ ++ + G+ R Sbjct: 174 VSRPFDDVLSEVIHLAENGVREVTLLGQNVNGYRGTTHDGRVADLADLIRVVAAVDGIDR 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 +RYTTSHP + SD LI+AH ++ L+ +LHLPVQ Sbjct: 234 IRYTTSHPLEFSDSLIQAHAEVPELVKHLHLPVQ 267 >gi|312793464|ref|YP_004026387.1| RNA modification enzyme, miab family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180604|gb|ADQ40774.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 434 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 150/440 (34%), Positives = 248/440 (56%), Gaps = 19/440 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ + ++F G+E V+ AD+ V+NTC + + K + + + L Sbjct: 9 GCKVNQYETQAVAELFKENGFEIVDFDSKADVYVINTCTVTNISDRKSRQAIKKAKKLSP 68 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---V 149 I VVV GC Q +E+ + V++++G + R+ + + + K+ Sbjct: 69 QSI-------VVVMGCYPQVYPQEV-EKIEDVDIIIGTKDRQRIVDYVRQYLEDKKKIVA 120 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 +D +Y E FE L I + + + AF+ I+EGCD+FC++C++PY RG SRSL Sbjct: 121 IDGEYKRE-AFEELKISEFNEHSR----AFIKIEEGCDQFCSYCIIPYARGAVRSRSLKS 175 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 + +E +L+ G E + G N++A+ GK LDG K T D++ +++I+G+ R+R ++ Sbjct: 176 IEEEVVRLVQKGYKEFVITGINISAY-GKDLDG-KVTLIDVIERVNKIEGVKRIRLSSLE 233 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P M+D I+ D L +LHL +QSGSD+ILK MNR +T +Y+ I+DRIR D+ Sbjct: 234 PVIMNDEFIERLLGFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVDRIREKWEDV 293 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 A ++D IVGFPGET++DF AT++ V KIG+++ F++SP+ GT +M QVD K Sbjct: 294 AFTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYDMPNQVDSKEKER 353 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNIG 448 R +++ F+ VG +EVLIE+ G G S +++++V S G Sbjct: 354 RSKIMKEVAANLAYQFHKKFVGNWLEVLIEQDSDFDGYYEGYSGNYIRTLVRKSHMIVPG 413 Query: 449 DIIKVRITDVKISTLYGELV 468 +I KV+IT + GE++ Sbjct: 414 EIYKVKITQAYEQYVKGEII 433 >gi|309789580|ref|ZP_07684161.1| RNA modification enzyme, MiaB family [Oscillochloris trichoides DG6] gi|308228316|gb|EFO81963.1| RNA modification enzyme, MiaB family [Oscillochloris trichoides DG6] Length = 450 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 154/451 (34%), Positives = 238/451 (52%), Gaps = 33/451 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R++V + GCQMN+ DS R+E GY + A IVLN+C +R A E++ L Sbjct: 22 RRYYVWTVGCQMNISDSERLEAALQGVGYSPAARPEQASFIVLNSCSVRASAEERIIGKL 81 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERA 143 G + +K +E D +VV+ GC+ I R P+V+ V P + L Sbjct: 82 GELVRVK----RENPDTIVVLWGCMVGPHNRSIFERQLPMVDHFVSPSAVDAVVAL---- 133 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + Y++++ L + D + V + IQ GC+ C++CV+P RG E Sbjct: 134 -----APNPIYTLDEPA--LPVRDAAHP---PVAVHVPIQYGCNMRCSYCVIPQRRGRER 183 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SRSL ++V E +++D+G EI LLGQ V++W G L G + +DL+ ++ I GL+RL Sbjct: 184 SRSLDEIVAEVTRIVDHGAREIVLLGQIVDSW-GHDLPG-RPQLADLIRAVHAIPGLLRL 241 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP M+D LI+ L MP ++LPVQ+GSDR+L M R +T YR +I RIR Sbjct: 242 RFLTSHPAWMTDHLIETVASLPRCMPEINLPVQAGSDRVLALMQRGYTTARYRDLIARIR 301 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-- 381 + P I++++D IVG PGE++ DF T+ L ++I + + +S R PG+ EQ Sbjct: 302 AAIPHISLTTDIIVGHPGESEADFAQTLALCEEIRFDKIHIAAFSAR---PGTVAAEQEA 358 Query: 382 -----VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 V E K R + +++ + +GQ +EVL+E G+ +GK GRSP + Sbjct: 359 DPSLAVSEEQKQARRIAMEQLHERIATQRSAMLLGQTVEVLVE--GESRGKWRGRSPGNK 416 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 V + G + +V IT +L G L Sbjct: 417 LVFFSDAADWTGRLARVHITQTSPWSLQGRL 447 >gi|32129446|sp|Q96SZ6|CK5P1_HUMAN RecName: Full=CDK5 regulatory subunit-associated protein 1; AltName: Full=CDK5 activator-binding protein C42 gi|56205140|emb|CAI19393.1| CDK5 regulatory subunit associated protein 1 [Homo sapiens] gi|119596731|gb|EAW76325.1| CDK5 regulatory subunit associated protein 1, isoform CRA_h [Homo sapiens] Length = 601 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 158/502 (31%), Positives = 265/502 (52%), Gaps = 53/502 (10%) Query: 17 IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 ++D+ + QR ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREK Sbjct: 91 MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A + +++ L +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 LP LL A G++ + S+++ + + V + +AF++I GCD C++C+V Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267 Query: 196 PYTRGIEISRSLSQVVDEARKLIDN--------------GVCEITLLGQNVNAWR----- 236 P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQVFLPPRPPKVLGLQGLKEVTLLGQNVNSFRDNSEV 327 Query: 237 ----------GKGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280 +G T F+ LL +S + +R+R+T+ HP+D D +++ Sbjct: 328 QFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQL 387 Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340 + D + +HLP QSGS R+L++M R ++ Y +++ IR P +++SSDFI GF Sbjct: 388 IHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFC 447 Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLR 399 GET++D T+ L+ ++ Y F F YS R T + L + V E VK RL L R Sbjct: 448 GETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFR 507 Query: 400 EQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPW-LQSVVLNSKNHNI---------- 447 E+ N VG VL+E K L GR+ L+ + +++ ++ Sbjct: 508 EEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQ 567 Query: 448 -GDIIKVRITDVKISTLYGELV 468 GD + V+IT TL G ++ Sbjct: 568 PGDYVLVKITSASSQTLRGHVL 589 >gi|254778972|ref|YP_003057077.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter pylori B38] gi|254000883|emb|CAX28819.1| Putative tRNA-i(6)A37 modification enzyme MiaB [Helicobacter pylori B38] Length = 437 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/449 (33%), Positives = 245/449 (54%), Gaps = 23/449 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264 + ++ EA KL +NG E+ LLGQNVN + + + K FSDLL LSEI+G+ R+R Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R+++ Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441 V + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEVT 407 Query: 442 SK-NHNIGDIIKVRITDVKISTLYGELVV 469 K N G+++KV I IS G L+ Sbjct: 408 CKEKRNPGELVKVEI----ISHSKGRLIA 432 >gi|168008611|ref|XP_001757000.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691871|gb|EDQ78231.1| predicted protein [Physcomitrella patens subsp. patens] Length = 523 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 163/481 (33%), Positives = 250/481 (51%), Gaps = 43/481 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +V++YGCQMNV D + + GY E V + +++D+I +NTC IRE A K++ L Sbjct: 31 KLYVETYGCQMNVNDMEIVLAIMKDSGYTEIVQTPEESDIIFINTCAIRENAEHKIWHRL 90 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++LK+ + V V GC+A+ E+++ +V+VV GP Y LP LL Sbjct: 91 NYFKHLKSRATRPAKPPKVAVLGCMAERLKEKLIVADKMVDVVCGPDAYRDLPRLLSLVD 150 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ ++T S+E+ + +S V N VTAF+++ GC+ C+FC+VP+TRG E S Sbjct: 151 EGQTGINTLLSLEETYADVSPVRIAKN---SVTAFVSVMRGCNNMCSFCIVPFTRGRERS 207 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG-LDGEK------------------- 244 R +S + E +L + GV E+ LLGQNVN++ +DG Sbjct: 208 RPVSSIAREVSELWEQGVKEVILLGQNVNSYNDTSEIDGGDENAKYMSTLSPGFSTIYKT 267 Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300 +F+ LL LS +R R+T+ HP+D D L+ D + +HLP QSGS Sbjct: 268 KELGLSFAHLLDVLSSQYPEMRFRFTSPHPKDFPDDLLFLMRDRPNICNMVHLPAQSGST 327 Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 R+L+ M R +T Y +DRIR + PD++ISSDFI GF GET++D + T+ LV ++GY Sbjct: 328 RVLERMRRGYTREAYLACVDRIRMIIPDVSISSDFISGFCGETEEDHQDTLKLVAEVGYD 387 Query: 361 QAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 A+ F YS R T N + V E VK RL + RE + + + + VL+E Sbjct: 388 MAYMFAYSMREKTHAHRNYEDDVPEPVKNRRLAEMITTFRETTLPRFTSQLQTMQLVLVE 447 Query: 420 KHGK--EKGKLVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVKISTLYG 465 K + +LVG+S V+ + GD ++V IT+ ++L G Sbjct: 448 GPNKRAPETELVGKSDKGHRVIFPKVPVMDGLSAAEMVDLKPGDFVEVYITETTHASLRG 507 Query: 466 E 466 E Sbjct: 508 E 508 >gi|229890682|sp|Q17YC7|MIAB_HELAH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 439 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 153/450 (34%), Positives = 245/450 (54%), Gaps = 25/450 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ N ADLI++NTC +REK K++S +G Sbjct: 3 KVYIETMGCAMNSRDSEHLLSELSKLDYKETNDPKIADLILINTCSVREKPERKLFSEIG 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL++SP V+ V+G + ++ +++ + + Sbjct: 63 QFAKIKKPNAKIG------VCGCTASHMGADILKKSPSVSFVLGARNVSKISQVIHKEKA 116 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S S + +K V + L I GCDK CT+C+VP+TRG EIS Sbjct: 117 VEVAIDYDES--------SYAFEFFEKKAEVRSLLNISIGCDKKCTYCIVPHTRGKEISI 168 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263 + ++ EA KL +NG E+ LLGQNVN + G E K FSDLL LSEI G+ R+ Sbjct: 169 PMDLILKEAEKLANNGTKELMLLGQNVNNY-GVRFSSEHAKVNFSDLLDKLSEIPGIERI 227 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP M+D ++ + +H+P+QSGS +LK M R + + +++++ Sbjct: 228 RFTSPHPLHMNDEFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYNKEWFLNRVEKLK 287 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++ P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 288 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVCFDTLYSFIYSPRPFTEAGAWKERVP 347 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440 V + RL LQ + +E VG+ VL+E + G++V GRS + + + Sbjct: 348 LEVSSLRLERLQNRHKEILEEKARLEVGKTHVVLVENRHEVDGQIVGFEGRSDTGKFIEV 407 Query: 441 NSK-NHNIGDIIKVRITDVKISTLYGELVV 469 K N G++++V I IS + G L+ Sbjct: 408 TCKEKRNPGELVEVEI----ISHVKGRLMA 433 >gi|303229106|ref|ZP_07315908.1| MiaB-like protein [Veillonella atypica ACS-134-V-Col7a] gi|302516230|gb|EFL58170.1| MiaB-like protein [Veillonella atypica ACS-134-V-Col7a] Length = 435 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 146/424 (34%), Positives = 237/424 (55%), Gaps = 18/424 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N YD+ M+ +F YE V+ AD+ V+NTC + +K R L Sbjct: 12 TLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKS-------RQL 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ D V+V GC AQ + + I VN+V+G ++ EL+E+ +R + Sbjct: 65 IRKAKRQNQDAYVIVTGCYAQLDPDAIAAIDG-VNLVIGTNNRSKIVELVEQLETTERQI 123 Query: 151 DT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + D E FE + + ++ R AF+ IQEGC+ +C FC++PYTRG SR + Sbjct: 124 NAVRDIMKESNFEEMPLFGNESDKSR---AFMKIQEGCNNYCAFCIIPYTRGKLKSRKVD 180 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V+EA++L+++G EI L G ++ + G L G + T +D++ +L EI L R+R+ + Sbjct: 181 DIVNEAKRLVEHGFHEIVLTGIHLGNY-GVELPG-RPTLADVVKALLEIPNLHRIRFGSI 238 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++SD LI+ + P+LHLP+Q+GSD +L M R +T EY+ +I +R+ PD Sbjct: 239 ESVEVSDELIELMATDKRVCPHLHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNLRNRIPD 298 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I++D I GFP ETD+DF TM+ V +IG+ +F YS R GTP + M QV E VK Sbjct: 299 LSITTDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREGTPAATMPNQVPEAVKK 358 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-RSPWLQSVVLNSKNHNI 447 R+ L + ++ + +G+ E+LIEK +E G G + ++ V + H+I Sbjct: 359 ARVALLNDLSEKGLHAYATSRIGKPGEILIEK--EENGYYTGLTNEYIHGRVKSDGQHSI 416 Query: 448 GDII 451 GD+I Sbjct: 417 GDLI 420 >gi|328872998|gb|EGG21365.1| hypothetical protein DFA_01246 [Dictyostelium fasciculatum] Length = 636 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 160/488 (32%), Positives = 256/488 (52%), Gaps = 71/488 (14%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 FV+SYGCQMN D+ + + GY +S AD+I LNTC IRE A +K++ L + Sbjct: 134 FVESYGCQMNFADTEVIYAVMKQSGYIIADSAKSADVIFLNTCAIRENAEDKIWFRLTEL 193 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 R K + +GG++++ V GC+A+ +++L V++VVGP Y LP LL R G+ Sbjct: 194 RKQKRVKRSQGGNMVIGVLGCMAERLKQKLLDSKNSVDLVVGPDAYRSLPALLGRIEDGQ 253 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 ++ S ++ + ++ V N G+ A+++I GC+ C++C+VP+TRG E SR L Sbjct: 254 TAINVMLSADETYADIAPVRHDSN---GLCAYVSIMRGCNNMCSYCIVPFTRGRERSRPL 310 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGEKC--------------------- 245 ++DE ++L G EITLLGQNVN++ G+D E Sbjct: 311 ESILDEVKQLSKTGYKEITLLGQNVNSYNYIPGVDAETSSEQVEQKDNKMEKEKLQPREG 370 Query: 246 ------------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293 TF++L+ ++S + +R+R+T+ HP+D D LI+ + H+ Sbjct: 371 FNTIYKSPKKGITFTELMDAVSLVDPEMRVRFTSPHPKDFPDSLIELVKVRPNICRQFHI 430 Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 P QSG+ +L+ M R +T Y ++ID I+ PD +ISSDFI GF GET+ + R T+ L Sbjct: 431 PAQSGNSDVLERMRRGYTRESYIELIDLIKRELPDCSISSDFISGFCGETEQEHRDTISL 490 Query: 354 VDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERL--------LCLQKKLREQQVS 404 ++ +GY A+ F YS R T +M + V E+VKA RL C+++K +++ Sbjct: 491 MEYVGYENAYMFAYSLREKTHAHRSMKDDVTEDVKARRLKEVIDTYYKCIREKSKDE--- 547 Query: 405 FNDACVGQIIEVLIEKHGKEKG-KLVGRS--------PWLQSVVLNSKNHN------IGD 449 +G+ VL+E+ + G VGR+ P + V + N+N +GD Sbjct: 548 -----LGKKHLVLVERQSRRSGDHFVGRTDSNKKCIVPMID--VTDPTNNNESTPIKLGD 600 Query: 450 IIKVRITD 457 + V I D Sbjct: 601 YVMVEIID 608 >gi|303232181|ref|ZP_07318884.1| MiaB-like protein [Veillonella atypica ACS-049-V-Sch6] gi|302513287|gb|EFL55326.1| MiaB-like protein [Veillonella atypica ACS-049-V-Sch6] Length = 431 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 144/424 (33%), Positives = 238/424 (56%), Gaps = 18/424 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N YD+ M+ +F YE V+ AD+ V+NTC + +K + + + Sbjct: 8 TLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKSRQLIRKAK-- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ D V+V GC AQ + + I VN+V+G ++ EL+E+ +R + Sbjct: 66 -----RQNQDAYVIVTGCYAQLDPDAIAAIDG-VNLVIGTNNRSKIVELVEQLETTERQI 119 Query: 151 DT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + D E FE + + ++ R AF+ IQEGC+ +C FC++PYTRG SR + Sbjct: 120 NAVRDIMKESNFEEMPLFGNESDKSR---AFMKIQEGCNNYCAFCIIPYTRGKLKSRKVD 176 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V+EA++L+++G EI L G ++ + G L G + T +D++ +L EI L R+R+ + Sbjct: 177 DIVNEAKRLVEHGFHEIVLTGIHLGNY-GVELPG-RPTLADVVKALLEIPNLHRIRFGSI 234 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++SD LI+ + P+LHLP+Q+GSD +L M R +T EY+ +I +R+ PD Sbjct: 235 ESVEVSDELIELMATDKRVCPHLHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNLRNRIPD 294 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I++D I GFP ETD+DF TM+ V +IG+ +F YS R GTP + M QV E VK Sbjct: 295 LSITTDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREGTPAATMPNQVPEAVKK 354 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-RSPWLQSVVLNSKNHNI 447 R+ L + ++ + +G+ E+LIEK +E G G + ++ V + H+I Sbjct: 355 ARVALLNDLSEKGLHAYATSRIGKPGEILIEK--EENGYYTGLTNEYIHGRVKSDGQHSI 412 Query: 448 GDII 451 GD+I Sbjct: 413 GDLI 416 >gi|62857473|ref|NP_001017192.1| CDK5 regulatory subunit associated protein 1 [Xenopus (Silurana) tropicalis] Length = 569 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 159/480 (33%), Positives = 253/480 (52%), Gaps = 41/480 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGCQMNV D+ + GY R + +AD+I+L TC +REKA + +++ L Sbjct: 82 KIYLETYGCQMNVNDTEIAWSILQQNGYVRTYTEAEADVILLVTCSVREKAEQTIWNRLQ 141 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 ++ LK R K + + + GC+A+ +EIL + +V++V GP Y LP LL A Sbjct: 142 QLAALKRKRSK-TSRMRIGLLGCMAERLKQEILDKENLVDLVAGPDAYRDLPRLLSVAET 200 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G++V + SV++ + + V + K +AF++I GCD CT+C+VP+TRG E SR Sbjct: 201 GQQVANVLLSVDETYADIMPVHTSASSK---SAFVSIMRGCDNMCTYCIVPFTRGRERSR 257 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWR----GKGLDGEKCTFS------------- 248 L +++E R L GV E+TLLGQNVN++R + + E S Sbjct: 258 PLQSILEEVRMLSSQGVKEVTLLGQNVNSYRDTSSAQFPNAESPPLSRGFSTIYKHKKGG 317 Query: 249 ----DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 DLL +S+I +R+R+T+ HP+D D +++ + + +H+P QSGS+++L+ Sbjct: 318 LRFVDLLDKVSQIDPEMRIRFTSPHPKDFPDEVLQLIAERHNICKQIHIPAQSGSNKVLE 377 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 +M R ++ Y +I I+ P +++SSDFI GF ET++D T+ L+ + Y AF Sbjct: 378 TMRRGYSREVYLDLIQNIQESIPGVSLSSDFITGFCEETEEDHLQTLSLLRTVSYNAAFL 437 Query: 365 FKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 F YS R T + L+ V + VK RL L RE+ N VG VL+E K Sbjct: 438 FAYSMRKKTRAYHRLQDDVPQEVKQRRLAELIAVFREEAGRVNQRAVGSTQLVLVEGPSK 497 Query: 424 EKG-KLVGRSPWLQSVVL------------NSKNHNI--GDIIKVRITDVKISTLYGELV 468 +L GR+ V+ NS + I GD + V+IT +L G L+ Sbjct: 498 RSPEELCGRNDGNTKVIFSEAPIVGGLAQENSLQNRIQSGDYVLVKITSSSSQSLKGTLL 557 >gi|317181612|dbj|BAJ59396.1| putative ATP-binding protein [Helicobacter pylori F57] Length = 437 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 146/435 (33%), Positives = 239/435 (54%), Gaps = 19/435 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264 + ++ EA KL NG E+ LLGQNVN + + D K FSDLL LSEI+G+ R+R Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSDHAKVDFSDLLDKLSEIQGIERIR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R+++ Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVHFDTLYSFIYSPRPFTEAGAWKERVPL 347 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441 V + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENGREIDNQIVGFEGRSDTGKFIEVA 407 Query: 442 SK-NHNIGDIIKVRI 455 K N G+++KV I Sbjct: 408 CKEKRNPGELVKVEI 422 >gi|134300331|ref|YP_001113827.1| RNA modification protein [Desulfotomaculum reducens MI-1] gi|134053031|gb|ABO51002.1| RNA modification enzyme, MiaB family [Desulfotomaculum reducens MI-1] Length = 436 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 158/447 (35%), Positives = 237/447 (53%), Gaps = 24/447 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + + GC++N Y+S + D+F GYE V+ AD V+NTC + K + R Sbjct: 7 IYTLGCKVNQYESSAIADLFRQAGYEIVDFEQHADAYVINTCTVTHMGDRKSRQIIRRAS 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 K+ ++ V GC AQ E+L P V++VVG + R+ +L+E GK Sbjct: 67 -------KQNPAAVITVTGCYAQTSPGEVLE-IPGVDLVVGTKDKSRIVQLVEAYSRGKG 118 Query: 149 VVDT--DYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V+ D D FE L + + G R AFL IQEGC+ FC +C++PY RG SR Sbjct: 119 PVNAVDDIMQTDCFEELPVPTEQGKTR-----AFLKIQEGCNSFCAYCIIPYARGPVRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 V+ A +LI G EI L G ++ A+ G+ G+ L+ L+++ GL RLR Sbjct: 174 LPENVLSSAEELIQQGFQEIVLTGIHIGAY-GQDFTGKDIDLGWLVERLAKLPGLTRLRL 232 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 + P D+++ LIKA + + +LH+P+QSG D IL M RR+ ++ +I +I + Sbjct: 233 GSVEPHDINNALIKAVSEHPNVCRHLHIPLQSGDDEILALMGRRYNTQQFTDLIHKINQI 292 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P IAI+SD IVGFPGET + F+ T+ V++ G+A FKYSPR GTP + M +QV Sbjct: 293 MPGIAITSDIIVGFPGETQEHFQNTLKTVERSGFAGIHVFKYSPRKGTPAAEMTDQVAPQ 352 Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLN 441 K ER L+ L +L Q F VG+ ++VL+E+ + K+ L G + V+ Sbjct: 353 DKEERSKSLIELGNRLAHQ---FAQQQVGKELKVLVEQPYEKDPNLLEGHTDTYLKVLFP 409 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 G +++V I VK STL G ++ Sbjct: 410 GDTGLKGQMVRVHIQGVKESTLKGRII 436 >gi|325106271|ref|YP_004275925.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pedobacter saltans DSM 12145] gi|324975119|gb|ADY54103.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pedobacter saltans DSM 12145] Length = 473 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 159/456 (34%), Positives = 256/456 (56%), Gaps = 25/456 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +V+SYGCQMN DS + + G+ + +AD++ +NTC IRE A +V + Sbjct: 31 RKLYVESYGCQMNFSDSEIVASILSDAGFVTTSDYKEADVVFINTCSIRENAEIRVRN-- 88 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R++ S++++ D+L+ V GC+A+ + L IV++VVGP Y LP L+ + Sbjct: 89 -RLKEFGASKVRKP-DMLIGVLGCMAERLKSKFLEEEKIVDLVVGPDAYRDLPNLIGKVD 146 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + V+ S E+ + ++ V N G+TAF++I GCD C+FCVVP+TRG E S Sbjct: 147 EGNKAVNVLLSREETYADINPVRLNSN---GITAFISIMRGCDNMCSFCVVPFTRGRERS 203 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---GEKCTFSDLLYSLSEIKGLV 261 R ++ EA+ L + G E+TLLGQNV++++ K D E F+ LL ++ + + Sbjct: 204 RDPHSIIKEAQDLFNAGYREVTLLGQNVDSYKWKASDEENAESVNFAQLLEKVALVHPDL 263 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R++TSHP+D++D ++ + + Y+HLPVQSG+ R+L+ MNR + Y + I+ Sbjct: 264 RVRFSTSHPKDITDDVLYTMAKYENICKYIHLPVQSGNSRVLEVMNRTYDREWYMEKINA 323 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-E 380 IR + P+ AIS+D I GF ET+++ + T+ + + + Y A+ F YS R GTP + + Sbjct: 324 IRRILPECAISTDIITGFCTETEEEHQETLSMQEFVKYDFAYMFSYSERPGTPAAKKFTD 383 Query: 381 QVDENVKAERL---LCLQKK---LREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRSP 433 V E VK RL + LQ+ R QQ +G++ +VLIE K K GR+ Sbjct: 384 DVPEAVKKRRLEEVIALQQTHGYYRLQQ------HIGKVEKVLIEGFSRKSKEDYCGRND 437 Query: 434 WLQSVVLN-SKNHNIGDIIKVRITDVKISTLYGELV 468 VV S + G + V I +TL G++V Sbjct: 438 QNCMVVFPVSDAYKPGQYVNVLIERATSATLIGKVV 473 >gi|89272073|emb|CAJ81315.1| CDK5 regulatory subunit associated protein 1 [Xenopus (Silurana) tropicalis] Length = 625 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 159/480 (33%), Positives = 253/480 (52%), Gaps = 41/480 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGCQMNV D+ + GY R + +AD+I+L TC +REKA + +++ L Sbjct: 138 KIYLETYGCQMNVNDTEIAWSILQQNGYVRTYTEAEADVILLVTCSVREKAEQTIWNRLQ 197 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 ++ LK R K + + + GC+A+ +EIL + +V++V GP Y LP LL A Sbjct: 198 QLAALKRKRSKTS-RMRIGLLGCMAERLKQEILDKENLVDLVAGPDAYRDLPRLLSVAET 256 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G++V + SV++ + + V + K +AF++I GCD CT+C+VP+TRG E SR Sbjct: 257 GQQVANVLLSVDETYADIMPVHTSASSK---SAFVSIMRGCDNMCTYCIVPFTRGRERSR 313 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWR----GKGLDGEKCTFS------------- 248 L +++E R L GV E+TLLGQNVN++R + + E S Sbjct: 314 PLQSILEEVRMLSSQGVKEVTLLGQNVNSYRDTSSAQFPNAESPPLSRGFSTIYKHKKGG 373 Query: 249 ----DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 DLL +S+I +R+R+T+ HP+D D +++ + + +H+P QSGS+++L+ Sbjct: 374 LRFVDLLDKVSQIDPEMRIRFTSPHPKDFPDEVLQLIAERHNICKQIHIPAQSGSNKVLE 433 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 +M R ++ Y +I I+ P +++SSDFI GF ET++D T+ L+ + Y AF Sbjct: 434 TMRRGYSREVYLDLIQNIQESIPGVSLSSDFITGFCEETEEDHLQTLSLLRTVSYNAAFL 493 Query: 365 FKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 F YS R T + L+ V + VK RL L RE+ N VG VL+E K Sbjct: 494 FAYSMRKKTRAYHRLQDDVPQEVKQRRLAELIAVFREEAGRVNQRAVGSTQLVLVEGPSK 553 Query: 424 EKG-KLVGRSPWLQSVVL------------NSKNHNI--GDIIKVRITDVKISTLYGELV 468 +L GR+ V+ NS + I GD + V+IT +L G L+ Sbjct: 554 RSPEELCGRNDGNTKVIFSEAPIVGGLAQENSLQNRIQSGDYVLVKITSSSSQSLKGTLL 613 >gi|317180074|dbj|BAJ57860.1| putative ATP-binding protein [Helicobacter pylori F32] Length = 437 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 150/450 (33%), Positives = 246/450 (54%), Gaps = 25/450 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK CT+C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCTYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264 + ++ EA KL NG E+ LLGQNVN + + + K FSDLL LSEI+G+ R+R Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R+++ Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV----GRSPWLQSVVL 440 V + RL LQ + +E VG+ VL+E +G+E + GRS + + + Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVE-NGREINNQIVGFEGRSDTGKFIEV 406 Query: 441 NSK-NHNIGDIIKVRITDVKISTLYGELVV 469 K N G++++V I IS G L+ Sbjct: 407 ACKEKRNPGELVRVEI----ISHSKGRLIA 432 >gi|150390794|ref|YP_001320843.1| RNA modification protein [Alkaliphilus metalliredigens QYMF] gi|149950656|gb|ABR49184.1| RNA modification enzyme, MiaB family [Alkaliphilus metalliredigens QYMF] Length = 433 Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 154/451 (34%), Positives = 256/451 (56%), Gaps = 26/451 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + GC++N Y++ M ++F GY V + AD+ V+NTC + +K F+ Sbjct: 2 KRVAFHTLGCKVNQYETQAMTELFEGSGYHLVKDTEIADVYVINTCTVTNVGDKKSRQFI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + + D ++VV GC AQ E++L VN+V+G ++ E++E Sbjct: 62 RRAK-------RNNPDGIIVVVGCYAQTAPEKVLDIEG-VNIVIGTNERNKIVEIVEGCS 113 Query: 145 FGKRV-VDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +V V D KFE +++ + G R AFL IQEGC+++C +C++PY RG Sbjct: 114 ADSKVNVVDDIMKIKKFEEMTVQEMHGKTR-----AFLKIQEGCNQYCAYCIIPYARGPI 168 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR +++ E + L++NG E+ L G +V ++ GK L G+ D+L ++ I+GL R Sbjct: 169 RSRGKIEIIQEVQTLVNNGFKEVVLTGIHVASY-GKDL-GDHEGLLDVLKRVNAIEGLER 226 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R ++ P SD + A L+ + + HL +QSGSD+ LK MNR++T+ YR+ + RI Sbjct: 227 IRLSSLEPTLFSDAFLSALSKLEKICDHFHLSLQSGSDKTLKKMNRKYTSQMYRETVKRI 286 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P +A+++D IVGFPGETD DF+ + D V+++ +++ FKYSPR GTP + +Q+ Sbjct: 287 RHYYPLVALTTDIIVGFPGETDVDFQTSYDFVEEMAFSEIHVFKYSPREGTPAAQFDDQI 346 Query: 383 D---ENVKAERLLCLQKKL-REQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQS 437 D ++ ++E+L+ L +L +E Q+ F D Q +EVL+E + G+++ L G + Sbjct: 347 DGITKHERSEKLIELGDRLKKEYQLQFID----QRMEVLLEGQSGQDQNLLEGFTTNHLK 402 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V+L SK G + V+I + S L G L+ Sbjct: 403 VLLASKQGKEGMLQDVQIDKIMDSGLLGHLL 433 >gi|317177084|dbj|BAJ54873.1| putative ATP-binding protein [Helicobacter pylori F16] Length = 437 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 145/435 (33%), Positives = 240/435 (55%), Gaps = 19/435 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGSDILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK CT+C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCTYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264 + ++ EA KL +NG E+ LLGQNVN + + + K FSDLL LSEI+G+ R+R Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGARFSNEHAKVDFSDLLDKLSEIQGIERIR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP M D ++ + +H+P+QSGS +LK M R ++ + ++R+++ Sbjct: 228 FTSPHPLHMDDAFLERFAKNPKVCKSIHMPLQSGSSTVLKMMRRGYSKEWFLNRVERLKA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441 V + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEVA 407 Query: 442 SK-NHNIGDIIKVRI 455 K N G++++V I Sbjct: 408 CKEKRNPGELVRVEI 422 >gi|317012111|gb|ADU82719.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter pylori Lithuania75] Length = 437 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 151/450 (33%), Positives = 244/450 (54%), Gaps = 25/450 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263 + ++ EA KL +NG E+ LLGQNVN + G E K FSDLL LSEI G+ R+ Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNY-GVRFSSEHAKVDFSDLLDKLSEISGIERI 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R++ Sbjct: 227 RFTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++ P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440 V + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 347 LEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEV 406 Query: 441 NSK-NHNIGDIIKVRITDVKISTLYGELVV 469 K N G+++KV I IS G L+ Sbjct: 407 TCKEKRNPGELVKVEI----ISHSKGRLIA 432 >gi|14042133|dbj|BAB55120.1| unnamed protein product [Homo sapiens] Length = 395 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 137/398 (34%), Positives = 228/398 (57%), Gaps = 26/398 (6%) Query: 17 IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 ++D+ + QR ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREK Sbjct: 1 MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 60 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A + +++ L +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y Sbjct: 61 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 120 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 LP LL A G++ + S+++ + + V + +AF++I GCD C++C+V Sbjct: 121 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 177 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---------------KGL 240 P TRG E SR ++ ++E +KL + G+ E+TLLGQNVN++RG +G Sbjct: 178 PLTRGRERSRPIASTLEEVKKLSEQGLKEVTLLGQNVNSFRGNSEVQFNSAVPTNLSRGF 237 Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 T F+ LL +S + +R+R+T+ HP+D D +++ + D + +HLP Sbjct: 238 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 297 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 QSGS R+L++M R ++ Y +++ IR P +++SSDFI GF GET++D T+ L+ Sbjct: 298 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL 357 Query: 355 DKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERL 391 ++ Y F F YS R T + L + V E VK RL Sbjct: 358 REVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRL 395 >gi|288922654|ref|ZP_06416830.1| RNA modification enzyme, MiaB family [Frankia sp. EUN1f] gi|288346012|gb|EFC80365.1| RNA modification enzyme, MiaB family [Frankia sp. EUN1f] Length = 326 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 140/337 (41%), Positives = 197/337 (58%), Gaps = 14/337 (4%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNV+DS R+ + S GY DAD++V NTC +RE A ++Y LG + K Sbjct: 1 MNVHDSERLAGLLESAGYVPAAQGADADVVVFNTCAVRENADNRLYGNLGHLYPTK---- 56 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 K + + V GC+AQ + IL R+P V+VV G +RLP LLERAR + Sbjct: 57 KNNPGMQIAVGGCLAQKDRSVILDRAPWVDVVFGTHNLHRLPVLLERARH-----NAAAQ 111 Query: 156 VEDKFERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 VE E L + +R +A+++I GCD CTFC+VP RG E R V+ E Sbjct: 112 VEIA-EALEVFPSSLPARRASHHSAWVSISVGCDNTCTFCIVPSLRGGERDRRPGDVLAE 170 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 L+ G EITLLGQNVN++ G+ L G+ F+ LL + I+GL R+R+T+ HPRD Sbjct: 171 VEALVAEGALEITLLGQNVNSY-GRSL-GDPGAFARLLRACGNIEGLERVRFTSPHPRDF 228 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D +I+A + P LH+P+QSGSD +L+ M R + + I++R+R P AI++ Sbjct: 229 TDDVIEAMAQTPNVCPQLHMPLQSGSDAVLRRMRRSYRRERFLGIVERVREAIPHAAITT 288 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 D IVGFPGET++DF T+D+V +A AF+FKYSPR Sbjct: 289 DIIVGFPGETEEDFADTLDVVRAARFAGAFTFKYSPR 325 >gi|328787511|ref|XP_393868.4| PREDICTED: CDK5RAP1-like protein-like [Apis mellifera] Length = 596 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 159/479 (33%), Positives = 254/479 (53%), Gaps = 45/479 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ + + YGCQMNV D+ + + S GY++V + +A++I+ TC IR+ A +K+++ L Sbjct: 110 QKVYFEVYGCQMNVNDTEVIWSILKSHGYKKVEDIKEANIILFITCSIRDNAEQKIWNRL 169 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +L+ K+ + + + GC+A+ ++IL R +V+V+ GP +Y LP LL Sbjct: 170 TDLNHLRKK--KKKNPIKIGLLGCMAERLKDKILERGKLVDVIAGPDSYKDLPRLLSIPD 227 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + ++ S ++ + ++ V N +AF+TI GCD CT+C+VP+TRG E S Sbjct: 228 -NETAINVVLSFDETYADITPVRLNPN---STSAFVTIMRGCDNMCTYCIVPFTRGRERS 283 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLD-------- 241 R + +V E + L D+GV EI LLGQNVN++R KG Sbjct: 284 RPIESIVKEIQSLSDDGVKEIVLLGQNVNSYRDMSQLKLYTNMETHLAKGFKTVYKNKKG 343 Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301 G + F DLL +S I +R+R+T+ HP+D D +++ + + +HLP QSG+ R Sbjct: 344 GRR--FCDLLDEVSRINPEMRIRFTSPHPKDFPDEVLQLIAERPNICKEIHLPAQSGNSR 401 Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361 IL+ M R +T Y ++ IR + P+I +SSDFI GF GET+++F+ T+ L++ I Y + Sbjct: 402 ILEKMRRGYTREAYIDLVHHIRQIIPNIYLSSDFITGFCGETEEEFQDTLSLIELIKYNK 461 Query: 362 AFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 AF F YS R T + V NVK RL + K R + N +GQ VL+EK Sbjct: 462 AFLFSYSMREKTTAHRRYQDDVPPNVKQNRLERMISKYRTEAEKLNKLQIGQSQLVLVEK 521 Query: 421 -----HGKEKGKLVGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGE 466 H + K G + P + + + K IGD + V+I + TL G+ Sbjct: 522 PSKRSHDSFQTKNDGNTRVIIPSMSIPIGKHSRDEKPIKIGDYVVVKIENANFQTLMGK 580 >gi|332662143|ref|YP_004444931.1| (dimethylallyl)adenosine tRNA methylthiotransferase miaB [Haliscomenobacter hydrossis DSM 1100] gi|332330957|gb|AEE48058.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Haliscomenobacter hydrossis DSM 1100] Length = 481 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 160/449 (35%), Positives = 252/449 (56%), Gaps = 17/449 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F+++SYGCQMN DS + + G++ +++ ADLI++NTC IREKA E V L Sbjct: 40 KHFYIESYGCQMNFSDSEIVASILAEVGFKPTRNLELADLILVNTCSIREKAEETVRKRL 99 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +K R K G LV V GC+A+ + L +V++VVGP Y LP+L+ A Sbjct: 100 RIFDAIK--RQKPG--TLVGVLGCMAERLKSKFLEEERLVDLVVGPDAYRDLPKLVATAE 155 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + V+ S E+ + +S + +GV+AF++I GCD C+FCVVP+TRG E S Sbjct: 156 DGDKGVNVFLSREETYADISPLRLD---SKGVSAFISIMRGCDNMCSFCVVPFTRGRERS 212 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRL 263 R ++ EA++L + G E+TLLGQNV++++ + E F+ LL ++ + +R+ Sbjct: 213 RDAFSILAEAQELYERGYREVTLLGQNVDSYKWTNPETETLVNFAHLLEMVALVAPDLRV 272 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R++TSHP+D+++ ++ + Y+HLPVQSG+ +L+ MNR + Y + I+ IR Sbjct: 273 RFSTSHPKDITNEVLHTIAKYPNICKYIHLPVQSGNSNVLERMNRTYDREWYMERIEAIR 332 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQV 382 + PD AISSD I GF ET+ + + T+ +++ Y+ ++ F YS R GT + + + Sbjct: 333 QIIPDCAISSDIIAGFCSETEAEHQDTLSMIEFADYSMSYMFFYSERPGTLAARKYPDDI 392 Query: 383 DENVKAERLLCLQKKLREQ-QVSF--NDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSV 438 VK R LQ+ + Q QVS+ N VG++ EVLIE K + GR+ + + Sbjct: 393 TLEVKKRR---LQEIINLQSQVSYRHNQRDVGKVYEVLIEGDSRKSEQDFCGRNSQNKMI 449 Query: 439 VLNS-KNHNIGDIIKVRITDVKISTLYGE 466 V + G I V I +TL GE Sbjct: 450 VFPKVPGYQPGQYINVLIKAASSATLIGE 478 >gi|317179336|dbj|BAJ57124.1| putative ATP-binding protein [Helicobacter pylori F30] Length = 437 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 144/435 (33%), Positives = 240/435 (55%), Gaps = 19/435 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKVADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264 + ++ EA KL NG E+ LLGQNVN + + + K FSDLL LSEI+G+ R+R Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R+++ Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441 V + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEVA 407 Query: 442 SK-NHNIGDIIKVRI 455 K N+G++++V I Sbjct: 408 CKEKRNLGELVRVEI 422 >gi|312622481|ref|YP_004024094.1| RNA modification enzyme, miab family [Caldicellulosiruptor kronotskyensis 2002] gi|312202948|gb|ADQ46275.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor kronotskyensis 2002] Length = 434 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 148/440 (33%), Positives = 248/440 (56%), Gaps = 19/440 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ + ++F G+E V+ AD+ V+NTC + + K + + + L Sbjct: 9 GCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNISDRKSRHAIKKAKKLSP 68 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---V 149 I VVV GC Q +E+ + V++++G + ++ + + + K+ Sbjct: 69 QSI-------VVVMGCYPQVYPQEV-EKIEDVDIIIGTKDRQKIVDYVRQYLEDKKKIVA 120 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 ++ DY E FE L I + +N + AF+ I+EGCD+FC++C++PY RG SRSL Sbjct: 121 INEDYKRE-AFEELKISE--FNERS--RAFIKIEEGCDQFCSYCIIPYARGAVRSRSLKS 175 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 + +E +L+ G E + G N++++ GK LDG K T D++ +++I+G+ R+R ++ Sbjct: 176 IEEEVIRLVQKGYKEFVITGINISSY-GKDLDG-KVTLIDVIERVNKIEGVKRIRLSSLE 233 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P M+ I+ D L +LHL +QSGSD+ILK MNR +T +Y+ I+DRIR D+ Sbjct: 234 PVIMNGEFIERLLSFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQSIVDRIREKWDDV 293 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 A ++D IVGFPGET++DF AT+D V KIG+++ F++SP+ GT M QVD K Sbjct: 294 AFTTDIIVGFPGETEEDFNATLDFVQKIGFSRIHVFRFSPKKGTKAYEMPNQVDSKEKER 353 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNIG 448 R +++ F+ VG+ +EVLIE+ G G S ++++++ S G Sbjct: 354 RSKIMKEVAASLSYQFHSKFVGKTLEVLIEQDSDFDGYYEGYSGNYIRTLIRKSHMIVHG 413 Query: 449 DIIKVRITDVKISTLYGELV 468 +I KV+IT + GE++ Sbjct: 414 EIYKVKITQAYRQYVKGEII 433 >gi|313893435|ref|ZP_07827007.1| tRNA methylthiotransferase YqeV [Veillonella sp. oral taxon 158 str. F0412] gi|313442076|gb|EFR60496.1| tRNA methylthiotransferase YqeV [Veillonella sp. oral taxon 158 str. F0412] Length = 431 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 146/424 (34%), Positives = 240/424 (56%), Gaps = 18/424 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N YD+ M+ +F YE V+ + AD+ V+NTC + +K R L Sbjct: 8 TLGCRVNQYDTDAMKGLFLQNNYEAVDFDEKADIYVINTCSVTNMGEKKS-------RQL 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ D V+V GC AQ + + I VN+V+G ++ EL+E+ +R + Sbjct: 61 IRKAKRQNEDAYVIVTGCYAQLDPDAIAAIDG-VNLVIGTNNRSKIVELVEQLESTERQI 119 Query: 151 DT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + D E FE + + ++ R AF+ IQEGC+ +C+FC++PYTRG SR + Sbjct: 120 NAVRDIMKESNFEEMPLFGNESDKAR---AFMKIQEGCNNYCSFCIIPYTRGKLKSRKIE 176 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V+EA++L+D+G EI L G ++ + G L G + T +D++ +L EI L R+R+ + Sbjct: 177 DIVEEAKRLVDHGFHEIVLTGIHLGNY-GVELPG-RPTLADVVKALLEIPELYRIRFGSI 234 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++SD L++ + P LHLP+Q+GSD +LK M R +T EY+ +I ++RS D Sbjct: 235 ESVEVSDELVELMDTDKRVCPNLHLPLQAGSDHVLKLMRRHYTLQEYKDLIAKLRSRIKD 294 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I++D I GFP ETD+DF T++ V +IG+ +F YS R GTP + M +QV E VK Sbjct: 295 LSITTDIIAGFPQETDEDFEETLNTVREIGFTHIHAFPYSIREGTPAATMPDQVPEAVKK 354 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-RSPWLQSVVLNSKNHNI 447 R+ L + ++ + +G+ E+LIEK +E G +G + ++ V + H I Sbjct: 355 TRVALLNGLSQAGYEAYAKSRIGKPGEILIEK--EENGYYMGLTNEYVNGKVKSDGAHKI 412 Query: 448 GDII 451 GD+I Sbjct: 413 GDLI 416 >gi|307636963|gb|ADN79413.1| tRNA-i:6:A37 methylthiotransferase [Helicobacter pylori 908] gi|325995554|gb|ADZ50959.1| tRNA-i(6)A37 methylthiotransferase [Helicobacter pylori 2018] Length = 437 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 151/450 (33%), Positives = 246/450 (54%), Gaps = 25/450 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263 + ++ EA KL +NG E+ LLGQNVN + G E K FSDLL LSEI+G+ R+ Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNY-GVRFSSEHAKVGFSDLLDKLSEIQGIERI 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R++ Sbjct: 227 RFTSPHPLHMNDEFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++ P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440 V + RL LQ + +E VG+ VL+E + G++V GRS + + + Sbjct: 347 LEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDGQIVGFEGRSDTGKFIEV 406 Query: 441 NSK-NHNIGDIIKVRITDVKISTLYGELVV 469 K N G++++V I IS G L+ Sbjct: 407 TCKEKRNPGELVRVEI----ISHSKGRLIA 432 >gi|323141892|ref|ZP_08076753.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium sp. YIT 12067] gi|322413639|gb|EFY04497.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium sp. YIT 12067] Length = 437 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 156/443 (35%), Positives = 244/443 (55%), Gaps = 20/443 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N D+ ME +F + GYE V + AD+ ++NTC + K R + Sbjct: 8 TLGCKVNQADTASMEGIFRASGYEVVPFGEPADVYLVNTCVVTNTGQRKS-------RQI 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N ++ LVVV GC Q EE+ R V+V++G Q R+ EL+E A KR Sbjct: 61 INRAVRHNPLSLVVVTGCYPQTAPEEV-RAIEGVDVIIGNQERGRIVELVEEALEHKRTE 119 Query: 151 DTD----YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D +V+ KFE L + G K AFL IQEGC+++CT+C++P+ RG SRS Sbjct: 120 ILDNVQQMTVDTKFEELGV--GTETDK--TRAFLKIQEGCNQYCTYCIIPFARGPLRSRS 175 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL--DGEKCTFSDLLYSLSEIKGLVRLR 264 L + +E KL+ G E+ L+G ++ + GK L +G+ T D + + ++G+ R+R Sbjct: 176 LDSIREEVGKLVAAGYKEVVLIGIHLGCY-GKELAKEGKHVTLYDAVKAALSVEGVQRVR 234 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + ++ L++ + L +LHLP+QSG D+IL++M+R + + ++++ IR+ Sbjct: 235 LGSLESVEVEPRLLQLMAEEPRLQRHLHLPLQSGCDKILRAMHRPYDTKRFTELVNEIRA 294 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD+AI++D IVGFPGE ++DF T++ K G+A+ F YS R GTP + M EQVDE Sbjct: 295 QVPDVAITTDVIVGFPGENEEDFATTLEFAKKCGFAKMHIFPYSKRKGTPAAEMKEQVDE 354 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 VK+ER L K E + VG++ EVL E+ ++ P+L+ VV+ Sbjct: 355 AVKSERAARLAKVDEELHQQMLQSTVGKVEEVLFEQPVDDEHMEGLCGPYLR-VVVPGTA 413 Query: 445 HNIGDIIKVRITDVKISTLYGEL 467 I+KV+IT +K L GEL Sbjct: 414 ELANTIVKVKITGIKEDFLLGEL 436 >gi|108562696|ref|YP_627012.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter pylori HPAG1] gi|122386728|sp|Q1CUN4|MIAB_HELPH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|107836469|gb|ABF84338.1| conserved hypothetical ATP-binding protein [Helicobacter pylori HPAG1] Length = 437 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 152/450 (33%), Positives = 244/450 (54%), Gaps = 25/450 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ N ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETNDPKIADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263 + ++ EA KL +NG E+ LLGQNVN + G E K FSDLL LSEI+G+ R+ Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNY-GVRFSSEHAKVDFSDLLDKLSEIQGIERI 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R++ Sbjct: 227 RFTSPHPLHMNDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++ P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440 V RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 347 LEVSYSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEV 406 Query: 441 NSK-NHNIGDIIKVRITDVKISTLYGELVV 469 K N G+++KV I IS G L+ Sbjct: 407 TCKEKRNPGELVKVEI----ISHSKGRLIA 432 >gi|270308549|ref|YP_003330607.1| tRNA I(6) A37 thitransferase miaB family [Dehalococcoides sp. VS] gi|270154441|gb|ACZ62279.1| tRNA I(6) A37 thitransferase miaB family [Dehalococcoides sp. VS] Length = 418 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 155/447 (34%), Positives = 243/447 (54%), Gaps = 42/447 (9%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ + GCQMN +S R+ +F GY + +DA+L+++N+C +RE A KV + L Sbjct: 4 YYLWTIGCQMNQAESERLGRLFELWGYSPADKAEDAELVLVNSCVVREHAENKVINRLHL 63 Query: 87 IRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +R LK NSR+K + + GC+ + I ++ P ++ + GP Sbjct: 64 LRKLKDKNSRLK------IALTGCLVGQDISSIRKKFPFIDYIFGPG------------- 104 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 S+ D E + G+ K V+A +TI +GCD FCT+CVVPY RG E Sbjct: 105 ----------SIPDWHE----IPQGFILPLKPPVSASVTIMQGCDNFCTYCVVPYRRGRE 150 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR+++++ EA +L+ G E+ LLGQNV+++ G L + C +DLL++L +I GL+R Sbjct: 151 KSRTIAEIYCEAAELVRRGSREVVLLGQNVDSY-GHDLPEKPC-LADLLHALHDIPGLLR 208 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TSHP+D+S LI A L + L LPVQ+G+D IL +M R +T+ +YR+++ R+ Sbjct: 209 IRFLTSHPKDISQKLIDAMASLPKVCHSLSLPVQAGADTILAAMRRGYTSEQYRELVGRL 268 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381 + PDI++ +D IVGFP ET + F + L+ IGY YSPR T + +M + Sbjct: 269 KIAMPDISLQTDLIVGFPSETAEQFDQSYKLMSDIGYDAIHVAAYSPRPQTVAARDMADN 328 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V K RL ++ + N A V EVL+E G++K K GR+ + V L Sbjct: 329 VPVAEKKRRLKLIEDLQKGTVSKANAALVDTFAEVLVE--GRQKNKWQGRTLGGKLVFLE 386 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 S G +I V+I +L +LV Sbjct: 387 SDQPLEGCLISVKIFKASPWSLQAKLV 413 >gi|320162381|ref|YP_004175606.1| putative tRNA-thiotransferase [Anaerolinea thermophila UNI-1] gi|319996235|dbj|BAJ65006.1| putative tRNA-thiotransferase [Anaerolinea thermophila UNI-1] Length = 438 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 161/448 (35%), Positives = 246/448 (54%), Gaps = 19/448 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++ + + GCQMNV DS R+ GY ++AD+IVLNTC +R+ A +K Y L Sbjct: 2 KYHIWTEGCQMNVADSQRVASALEHLGYSVTPKPEEADVIVLNTCVVRQSAEDKAYGRLN 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR-RSPIVNVVVGPQTYYRLPELLERAR 144 +R LK ++ L++ + GC+ + LR R P V+V P L L ++ Sbjct: 62 SLRPLK----EKNPHLVINLMGCLVGIRNNDALRKRFPFVDVFSPPSDPSPLVAFLTQSE 117 Query: 145 ---FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + T Y+ D +V R + V+A + + GC CT+C++PY RGI Sbjct: 118 VRAMEESATATRYAYMDG----DLVLPEVERGKLVSAHIPVVYGCSHACTYCIIPYRRGI 173 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ EAR L+ GV EITLLGQ V+ + GK + T + LL LSEI+GL Sbjct: 174 ERSRPPEDILAEARALVRQGVKEITLLGQIVDRY-GKD-NPAYPTLAGLLIRLSEIEGLE 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+ TSHP M+D L+ A L +MP++ +P Q+G D +L++M R +TA +YR++I R Sbjct: 232 RIRFLTSHPNWMTDELLDAVASLPKVMPHIEVPAQAGDDTVLENMKRGYTAEQYRELIAR 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLE 380 IR P ++I++D IVGFPGET++ F T L++ + A +YSPR GT M + Sbjct: 292 IRERIPGVSIATDIIVGFPGETEEQFMNTYRLLEDLRLDVAHLARYSPRPGTVSARRMKD 351 Query: 381 QVDENVKAERLLCLQKKLREQQV-SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 V E K R L+ +L+E+ V N +G+ + VL E+ K++ K GR+P + V Sbjct: 352 DVPEEEKMRRFRMLE-ELQERIVGEINARYLGESVPVLFEEKVKQRWK--GRTPTNKLVF 408 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467 + S+ G I +V+IT ++ G L Sbjct: 409 VESEEDLHGQIREVKITWTGPWSMIGSL 436 >gi|312127656|ref|YP_003992530.1| RNA modification enzyme, miab family [Caldicellulosiruptor hydrothermalis 108] gi|311777675|gb|ADQ07161.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor hydrothermalis 108] Length = 434 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 149/440 (33%), Positives = 248/440 (56%), Gaps = 19/440 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ + ++F G+E V+ AD+ V+NTC + + K + + + L Sbjct: 9 GCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNISDRKSRQAIKKAKKLSP 68 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---V 149 I VVV GC Q +E+ + V++++G + R+ + + + K+ Sbjct: 69 QSI-------VVVMGCYPQVYPQEV-EKIEDVDIIIGTKDRQRIVDYVRQYLEDKKKIVA 120 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 +D +Y E FE L I + +N + AF+ I+EGCD+FC++C++PY RG SRSL Sbjct: 121 IDGEYKRE-AFEELKISE--FNERS--RAFIKIEEGCDQFCSYCIIPYARGAVRSRSLKS 175 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 + +E +L+ G E + G N++++ GK LDG K T D++ +++I+G+ R+R ++ Sbjct: 176 IEEEVIRLVQKGYKEFVITGINISSY-GKDLDG-KVTLIDVIERVNKIEGVKRIRLSSLE 233 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P M+D I+ D L +LHL +QSGSD+ILK MNR +T +Y+ I+DRIR D+ Sbjct: 234 PVIMNDEFIERLLGFDKLCHHLHLSLQSGSDKILKLMNRHYTTAKYQGIVDRIREKWEDV 293 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 A ++D IVGFPGET++DF AT++ V KIG+++ F++SP+ GT M QVD K Sbjct: 294 AFTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYEMPNQVDSKEKER 353 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNIG 448 R +++ F+ VG +EVLIE+ G G S ++++++ S G Sbjct: 354 RSKVMKEVAARLSYQFHRKFVGNWLEVLIEQDSDFDGYYEGYSGNYIRTLIRKSNMIVSG 413 Query: 449 DIIKVRITDVKISTLYGELV 468 +I KV+IT + GE++ Sbjct: 414 EIYKVKITQAYEQYVKGEII 433 >gi|222529273|ref|YP_002573155.1| MiaB family RNA modification enzyme [Caldicellulosiruptor bescii DSM 6725] gi|222456120|gb|ACM60382.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor bescii DSM 6725] Length = 434 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 148/440 (33%), Positives = 248/440 (56%), Gaps = 19/440 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ + ++F G+E V+ AD+ V+NTC + + K + + + L Sbjct: 9 GCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNISDRKSRQAIKKAKKLSP 68 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---V 149 I VVV GC Q +E+ + V++++G + ++ + + + K+ Sbjct: 69 QSI-------VVVMGCYPQVYPQEV-EKIEDVDIIIGTKDRQKIVDYVRQYLEDKKKIVA 120 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 ++ DY E FE L I + +N + AF+ I+EGCD+FC++C++PY RG SRSL Sbjct: 121 INEDYKRE-AFEELKISE--FNERS--RAFIKIEEGCDQFCSYCIIPYARGAVRSRSLKS 175 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 + +E +L+ G E + G N++++ GK LD EK T D++ +++I+G+ R+R ++ Sbjct: 176 IEEEVIRLVQKGYKEFVITGINISSY-GKDLD-EKVTLIDVIERVNKIEGVKRIRLSSLE 233 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P M+ I+ D L +LHL +QSGSD+ILK MNR +T +Y+ I+DRIR D+ Sbjct: 234 PVIMNGEFIERLLSFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQSIVDRIREKWDDV 293 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 A ++D IVGFPGET++DF AT+D V KIG+++ F++SP+ GT M QVD K Sbjct: 294 AFTTDIIVGFPGETEEDFNATLDFVQKIGFSRIHVFRFSPKKGTKAYEMPNQVDSKEKER 353 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNIG 448 R +++ F+ VG+ +EVLIE+ G G S ++++++ S G Sbjct: 354 RSKIMKEVAASLSYQFHSKFVGKTLEVLIEQDSDFDGYYEGYSGNYIRTLIRKSHMIVHG 413 Query: 449 DIIKVRITDVKISTLYGELV 468 +I KV+IT + GE++ Sbjct: 414 EIYKVKITQAYRQYVKGEII 433 >gi|15611324|ref|NP_222975.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter pylori J99] gi|11387382|sp|Q9ZMG6|MIAB_HELPJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|4154788|gb|AAD05846.1| putative [Helicobacter pylori J99] Length = 437 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 146/436 (33%), Positives = 241/436 (55%), Gaps = 21/436 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263 + ++ EA KL +NG E+ LLGQNVN + G E K FSDLL LSEI+G+ R+ Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNY-GVRFSSEHAKVGFSDLLDKLSEIQGIERI 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R++ Sbjct: 227 RFTSPHPLHMNDAFLERFAQNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++ P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440 + + RL LQ + +E VG+ VL+E + G++V GRS + + + Sbjct: 347 LEISSLRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDGQIVGFEGRSDTGKFIEV 406 Query: 441 NSK-NHNIGDIIKVRI 455 K N G++++V I Sbjct: 407 TCKEKKNPGELVRVEI 422 >gi|21356207|ref|NP_650002.1| CG6345 [Drosophila melanogaster] gi|32129453|sp|Q9VGZ1|CK5P1_DROME RecName: Full=CDK5RAP1-like protein gi|7299338|gb|AAF54531.1| CG6345 [Drosophila melanogaster] gi|17945319|gb|AAL48716.1| RE15838p [Drosophila melanogaster] Length = 583 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 151/470 (32%), Positives = 246/470 (52%), Gaps = 39/470 (8%) Query: 32 YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 YGCQMN D+ + + GY R ++AD+I+L TC +R+ A +++ + L +R +K Sbjct: 99 YGCQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNRLKHLRAMK 158 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150 N R L + + GC+A+ E++L + V+V+ GP +Y LP LL +R +G + Sbjct: 159 NKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISRHYGNSAI 218 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + S+++ + + V TAF++I GCD CT+C+VP+TRG E SR L+ + Sbjct: 219 NVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASI 275 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---------------------CTFSD 249 V E + L + GV E+TLLGQNVN++R + E+ F+ Sbjct: 276 VAEVKALAEQGVKEVTLLGQNVNSYRDRTAQEEQDSLKATPVPGFSTVYKPKTGGTPFAA 335 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL S+++ +R+R+T+ HP+D SD +++ D + LHLP QSG+ ++L+ M R Sbjct: 336 LLRSVAQAVPDMRIRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLERMRRG 395 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 ++ Y +++ IR P++ +SSDFI GF GET+++F+ T+ L+ ++ Y A+ F YS Sbjct: 396 YSREAYLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAYLFAYSM 455 Query: 370 RLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGK 427 R T + V NVK ERL + + RE + GQ +LIE K + Sbjct: 456 REKTTAHRRYKDDVPINVKNERLQRMVQVFREGATQLHRKMEGQEQLILIEGKSKRSDAH 515 Query: 428 LVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVKISTLYG 465 GR+ V++ S K+ +GD + VRI + L G Sbjct: 516 WFGRNDANIKVIVPSIYVPISGDSTARKSFGVGDFLAVRIEESNSQVLKG 565 >gi|119596726|gb|EAW76320.1| CDK5 regulatory subunit associated protein 1, isoform CRA_c [Homo sapiens] Length = 592 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 149/454 (32%), Positives = 245/454 (53%), Gaps = 41/454 (9%) Query: 17 IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 ++D+ + QR ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREK Sbjct: 91 MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A + +++ L +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 LP LL A G++ + S+++ + + V + +AF++I GCD C++C+V Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267 Query: 196 PYTRGIEISRSLSQVVDEARKLIDN--------------GVCEITLLGQNVNAWR----- 236 P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQVFLPPRPPKVLGLQGLKEVTLLGQNVNSFRDNSEV 327 Query: 237 ----------GKGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280 +G T F+ LL +S + +R+R+T+ HP+D D +++ Sbjct: 328 QFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQL 387 Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340 + D + +HLP QSGS R+L++M R ++ Y +++ IR P +++SSDFI GF Sbjct: 388 IHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFC 447 Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLR 399 GET++D T+ L+ ++ Y F F YS R T + L + V E VK RL L R Sbjct: 448 GETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFR 507 Query: 400 EQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRS 432 E+ N VG VL+E K L GR+ Sbjct: 508 EEATKANQTSVGCTQLVLVEGLSKRSATDLCGRN 541 >gi|261839125|gb|ACX98890.1| hypothetical protein HPKB_0280 [Helicobacter pylori 52] Length = 437 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 144/435 (33%), Positives = 239/435 (54%), Gaps = 19/435 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264 + ++ EA KL NG E+ LLGQNVN + + + K FSDLL LSEI+G+ R+R Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R+++ Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441 V + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEVA 407 Query: 442 SK-NHNIGDIIKVRI 455 K N G++++V I Sbjct: 408 CKEKRNPGELVRVEI 422 >gi|308184072|ref|YP_003928205.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter pylori SJM180] gi|308059992|gb|ADO01888.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter pylori SJM180] Length = 437 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 147/436 (33%), Positives = 239/436 (54%), Gaps = 21/436 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKTQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263 + ++ EA KL NG E+ LLGQNVN + G E K FSDLL LSEI+G+ R+ Sbjct: 168 PMDLILKEAEKLAHNGTKELMLLGQNVNNY-GVRFSSEHAKVDFSDLLDKLSEIQGIERI 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R++ Sbjct: 227 RFTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++ P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440 V + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 347 LEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDDQIVGFEGRSDTGKFIEV 406 Query: 441 NSK-NHNIGDIIKVRI 455 K N G+++KV I Sbjct: 407 TCKEKRNPGELVKVEI 422 >gi|238019340|ref|ZP_04599766.1| hypothetical protein VEIDISOL_01204 [Veillonella dispar ATCC 17748] gi|237864039|gb|EEP65329.1| hypothetical protein VEIDISOL_01204 [Veillonella dispar ATCC 17748] Length = 431 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 145/424 (34%), Positives = 238/424 (56%), Gaps = 18/424 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N YD+ M+ +F YE V+ + AD+ V+NTC + +K R L Sbjct: 8 TLGCRVNQYDTDAMKGLFLQNNYEAVDFDEKADIYVINTCSVTNMGEKKS-------RQL 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ D V+V GC AQ + + I VN+V+G ++ EL+E+ +R + Sbjct: 61 IRKAKRQNEDAYVIVTGCYAQLDPDAIAAIDG-VNLVIGTNNRSKIVELVEQLESTERQI 119 Query: 151 DT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + D E FE + + ++ R AF+ IQEGC+ +C FC++PYTRG SR + Sbjct: 120 NAVRDIMNESNFEEMPLYGNESDKAR---AFMKIQEGCNNYCAFCIIPYTRGKLKSRKVD 176 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V EA++L+++G EI L G ++ + G L G + T +D++ +L EI L R+R+ + Sbjct: 177 DIVQEAKRLVEHGFHEIVLTGIHLGNY-GVELPG-RPTLADVVKALLEIPDLYRIRFGSI 234 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++SD L++ + P+LHLP+Q+GSD +LK M R +T EY+ +I +RS D Sbjct: 235 ESVEVSDELVELMATNKRVCPHLHLPLQAGSDHVLKLMKRHYTLQEYKDLIASLRSRIKD 294 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I++D I GFP ETD+DF T++ V +IG+ +F YS R GTP + M +QV E VK Sbjct: 295 LSITTDIIAGFPQETDEDFEETLNTVREIGFTHIHAFPYSIREGTPAATMPDQVPEAVKK 354 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-RSPWLQSVVLNSKNHNI 447 R+ L + ++ + +G+ E+LIEK +E G +G + ++ V + H I Sbjct: 355 TRVALLNGLSQSGYEAYAKSRIGKPGEILIEK--EENGYYMGLTNEYVNGKVKSDGTHKI 412 Query: 448 GDII 451 GD+I Sbjct: 413 GDLI 416 >gi|78044693|ref|YP_359280.1| MiaB-like tRNA modifying enzyme [Carboxydothermus hydrogenoformans Z-2901] gi|77996808|gb|ABB15707.1| MiaB-like tRNA modifying enzyme [Carboxydothermus hydrogenoformans Z-2901] Length = 434 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 160/442 (36%), Positives = 239/442 (54%), Gaps = 21/442 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ ++ F +GYE V+ D AD+ V+NTC + + K R + Sbjct: 8 TLGCKVNQYETEALKGAFLEKGYEIVDFSDYADIYVINTCTVTHLSDRKS-------RQM 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ +V GC AQ EEIL+ P VN+V+G RL EL+E+ + + Sbjct: 61 IRKAVQKNPRAVVAAVGCYAQVAPEEILK-IPEVNLVLGTVHKNRLVELVEKVLRERTKI 119 Query: 151 DTDYSVEDKFER----LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + S E+ E L + G AF+ IQEGC+ +C +C++PY RG SR Sbjct: 120 NAVASFEELLEFEEMPLKLAPGK------ARAFVKIQEGCNSYCAYCIIPYARGPLRSRP 173 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L VV E +KL +G EI L G + A+ + D K +DL+ L +I L RLR + Sbjct: 174 LEDVVAEVKKLCQSGFSEIVLTGIHTGAYGQEKQDLPK--LADLVAELFKIPELKRLRLS 231 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P+D + L+ + +LHLP+QSG D ILK+M R++T+YEY ++I+ IR Sbjct: 232 SIEPQDFTVELLDVLANSPKFCRHLHLPLQSGDDDILKAMRRKYTSYEYLRLIETIRERI 291 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDIA++SD IVGFPGET++ F T +LV K+G+ FKYSPR GTP + M Q+ E Sbjct: 292 PDIALTSDVIVGFPGETEEQFLNTYNLVKKVGFMDIHVFKYSPRAGTPAAKMPGQIPERE 351 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 K R L L E ++ +G+I+EV+ E+ E G G S V + N Sbjct: 352 KERRSLLLLNLKEELFKNYASKFLGKILEVIPEEQDTE-GFWEGHSDNYLRVKFSGNNIK 410 Query: 447 IGDIIKVRITDVKISTLYGELV 468 G+I V+IT++K + GELV Sbjct: 411 RGEIYPVKITEMKEGYVSGELV 432 >gi|302871917|ref|YP_003840553.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor obsidiansis OB47] gi|302574776|gb|ADL42567.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor obsidiansis OB47] Length = 433 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 148/440 (33%), Positives = 247/440 (56%), Gaps = 19/440 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ + ++F G+E V+ AD+ V+NTC + + K + + + L Sbjct: 9 GCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNMSDRKSRQAIKKAKKLSP 68 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---V 149 I VVV GC Q E+ + I ++++G + ++ + ++ K+ Sbjct: 69 ESI-------VVVMGCYPQVYPHEVEKIRDI-DIIIGTKDRQKIVDYVKEYLDNKKKIVA 120 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 +D Y E FE L I + +N + AF+ I+EGCD+FC++C++PY RG SRSL Sbjct: 121 IDEGYKRES-FEELKISE--FNERS--RAFIKIEEGCDQFCSYCIIPYARGAVRSRSLES 175 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 + +E R+L+ NG E + G N++A+ GK LDG K T D++ ++EI+G+ R+R ++ Sbjct: 176 IEEEVRRLVSNGYKEFVITGINISAY-GKDLDG-KITLIDVIERINEIEGVKRIRLSSLE 233 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P MS+ I D L +LHL +QSGSD+ILK MNR +T +Y+ I++RI+ D+ Sbjct: 234 PLIMSEQFISRLLSFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVERIKEKWDDV 293 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 A ++D IVGFPGET++DF T+ V +IG+++ F++SP+ GT +M Q+D K Sbjct: 294 AFTTDIIVGFPGETEEDFNDTVKFVQEIGFSRIHVFRFSPKKGTKAYDMPNQIDSKEKER 353 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNIG 448 R +++ F+ VG+ +EVLIE+ G G S +++++V S G Sbjct: 354 RSKVMKEVAANLSYQFHRKFVGKWLEVLIEQDSDFDGYYEGYSGNYIRTLVRKSHMIVPG 413 Query: 449 DIIKVRITDVKISTLYGELV 468 +I KV+IT + GE++ Sbjct: 414 EIYKVKITQAYEQYVKGEII 433 >gi|330803397|ref|XP_003289693.1| hypothetical protein DICPUDRAFT_36174 [Dictyostelium purpureum] gi|325080203|gb|EGC33768.1| hypothetical protein DICPUDRAFT_36174 [Dictyostelium purpureum] Length = 538 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 155/484 (32%), Positives = 264/484 (54%), Gaps = 47/484 (9%) Query: 11 AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70 ++ S I+++ + ++++YGCQMN D+ + + + GY+ ++++ +AD++ LNTC Sbjct: 34 PYLQSTIMNETGEGKNVYIETYGCQMNFADTEVINSILKTSGYKIIDTLKEADIVFLNTC 93 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130 IRE A K++ L +R+ K KE ++ + V GC+A+ E++L V++VVGP Sbjct: 94 AIRENAESKIWLRLSELRSKKR---KEKRNITIAVIGCMAERLKEKLLESEHRVDIVVGP 150 Query: 131 QTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188 Y LP LL + + G++ ++ S ++ + ++ V N V+A+++I GC+ Sbjct: 151 DAYRSLPSLLAKIQDGEQQTAINVMLSADETYADITPVRTSDNM---VSAYVSIMRGCNN 207 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------------- 235 C++C+VP+TRG E SR + +++E R+L + G EITLLGQNVN++ Sbjct: 208 MCSYCIVPFTRGRERSRPVESILNEVRQLSEQGYKEITLLGQNVNSYNFVDNEESTPVNK 267 Query: 236 ----RGKGLDGEKC---------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282 + K DG K +F++L+ +SE+ +R+R+T+ HP+D + L++ Sbjct: 268 DEIEKLKPRDGFKTIYKSPKKGISFTELIKLVSEVDPEMRIRFTSPHPKDFPNDLLELVK 327 Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342 + + LH+P QSGS ++L+SM R +T Y ++ID I+ PD ISSDFI GF GE Sbjct: 328 NTPNICNSLHIPAQSGSSKVLESMRRGYTRESYLELIDTIKKELPDCTISSDFISGFCGE 387 Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLL----CLQKK 397 T+ D T+ L++ +G+ AF F YS R T L + V KA RL K Sbjct: 388 TEQDHLETISLMEYVGFENAFMFMYSLREKTHAHRHLKDDVSVEDKARRLSQVVDTFYKL 447 Query: 398 LREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVV---LNSKNHNIGDIIKV 453 L+E+ ++ +G VLI++ + VGR+ + V+ L NIGD + V Sbjct: 448 LKEK----SNKEIGNFHLVLIDRLSRRSNNDFVGRTDTNKKVLIPNLEEDKLNIGDYVIV 503 Query: 454 RITD 457 +I + Sbjct: 504 QIVN 507 >gi|324508033|gb|ADY43398.1| CDK5RAP1-like protein [Ascaris suum] Length = 584 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 158/469 (33%), Positives = 247/469 (52%), Gaps = 43/469 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV D + + F+ Y V+ AD+++L TC IRE A EKV+ L ++R Sbjct: 100 TYGCQMNVNDMETVRSILFANKYLEVDDERKADVVLLMTCSIREGAEEKVWRVLKKLRRS 159 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N + G V GC+A+ ++L+ + V+VV GP +Y LP LL R G+ + Sbjct: 160 ANKQQTVG------VLGCMAERVRHKLLQEANAVDVVAGPDSYRDLPRLLAVTRTGRSAI 213 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + S+E+ + ++ V K +AF++I GCD CT+C+VP+TRG E SR L + Sbjct: 214 NVQLSLEETYADVTPVRLDPMAK---SAFVSIMRGCDNMCTYCIVPFTRGRERSRPLRSI 270 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGK--------GLD------GEKC---------TF 247 VDE ++L G ++ LLGQNVN++R G+D G K F Sbjct: 271 VDEVKRLSYQGYKQVVLLGQNVNSYRDTSEATYVSCGIDDSGLAPGFKTIYKPKKSGLNF 330 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 + LL +S++ +R+R+T+ HP+D S +I+ + + +HLP QSGS+ +L++M Sbjct: 331 ATLLERVSDVDPEMRIRFTSPHPKDFSFQVIELIKERTNICKQIHLPAQSGSNTVLEAMG 390 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R +T Y ++D+IR + P+++++SDFI GF GET+ D + T+DL+ ++ Y+ + F Y Sbjct: 391 RGYTRESYLALVDQIRQLIPEVSLTSDFIAGFCGETERDHQQTLDLIRRVKYSFCYVFPY 450 Query: 368 SPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 S R T S ++ + V VK R L + R + + N A VG VLIE K Sbjct: 451 SMREKTRASYHLKDDVPIEVKRRRHEELAQVFRGEALKTNAALVGSKQLVLIESRSKRSA 510 Query: 427 KLV-GRSPWLQSVVLNS---------KNHNIGDIIKVRITDVKISTLYG 465 V GR+ V+L + + GD + V I TL G Sbjct: 511 TAVAGRADGGAKVILENCEVDGCGEVRELRPGDYVAVEIESANSQTLLG 559 >gi|194740916|ref|XP_001952936.1| GF17521 [Drosophila ananassae] gi|190625995|gb|EDV41519.1| GF17521 [Drosophila ananassae] Length = 577 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 242/465 (52%), Gaps = 33/465 (7%) Query: 32 YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 +GCQMN D+ + + GY R +DAD+I+L TC +R+ A +++++ L +R +K Sbjct: 101 FGCQMNTNDTEVVWSVLRENGYARCQDPEDADIIMLVTCAVRDGAEQRIWNRLKHLRAMK 160 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150 + R L + V GC+A+ E++L + V+V+ GP +Y LP LL +R +G + Sbjct: 161 SKRSPRRHPLQLSVLGCMAERLKEKLLEKEQCVDVIAGPDSYKDLPRLLAISRHYGNSAI 220 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + S+++ + + V TA+++I GCD CT+C+VP+TRG E SR L + Sbjct: 221 NVLLSLDETYADVMPVRLN---SESPTAYVSIMRGCDNMCTYCIVPFTRGRERSRPLESI 277 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK--------------------CTFSDL 250 + E R L + GV E+TLLGQNVN++R G EK TFS L Sbjct: 278 LTEVRALQEQGVKEVTLLGQNVNSYRDGGTSQEKDPNSVPVPGFKTVYKPKSGGITFSRL 337 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L S++E +R+R+T+ HP+D SD +++ D + LHLP QSG+ ++L+ M R + Sbjct: 338 LRSVAEAVPEMRIRFTSPHPKDFSDDVLRVIRDYPNVCKQLHLPAQSGNTKVLERMRRGY 397 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + Y ++DRIR P++ +SSDFI GF GET+++F+ T+ L+ ++ Y A+ F YS R Sbjct: 398 SREAYLHLVDRIRLFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAYLFAYSMR 457 Query: 371 LGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKL 428 T + V VK ERL + + R + G +LIE K + Sbjct: 458 EKTTAHRRFKDDVPLLVKNERLKRMVEVFRAGATELHKKMEGHEQLILIEGKSKRSASHW 517 Query: 429 VGRSPWLQSVVLNSKNH-------NIGDIIKVRITDVKISTLYGE 466 GR+ V++ + IGD + I + L G+ Sbjct: 518 FGRNDANIKVIVPAGKPLGSDQPIQIGDFVVAHIEESNSQVLKGK 562 >gi|281207324|gb|EFA81507.1| hypothetical protein PPL_05496 [Polysphondylium pallidum PN500] Length = 616 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 164/494 (33%), Positives = 255/494 (51%), Gaps = 49/494 (9%) Query: 16 QIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 +I D + FV+SYGCQMN D+ + + S GY S AD++ LNTC IRE Sbjct: 116 EIADASGEGRSVFVESYGCQMNFADTEIVYSVMRSAGYTVAESAKSADIVFLNTCAIREN 175 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A +K++ L +R K ++G ++ V GC+A+ +++L + V++VVGP Y Sbjct: 176 AEDKIWFRLSELRKQKR---RQG--TVIGVLGCMAERLKQKLLESNKSVDLVVGPDAYRS 230 Query: 136 LPELLERARFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 LP LL R G + ++ S ++ + ++ + N GV+A+++I GC+ C++C+ Sbjct: 231 LPSLLSRIEDGDQTAINVMLSADETYADIAPIRTNSN---GVSAYVSIMRGCNNMCSYCI 287 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR------------------ 236 VP+TRG E SRS+ +VDE ++L +G EITLLGQNVN++ Sbjct: 288 VPFTRGRERSRSIHSIVDEVKQLSADGYKEITLLGQNVNSYNFIDEVVEPLAEKKEKEVL 347 Query: 237 --GKGLDG------EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288 +G + TF++L+ +S + +R+R+T+ HP+D D LI+ + Sbjct: 348 TPREGFNTIYKSPKRGVTFTELMDKVSLVDPEMRIRFTSPHPKDFPDALIELIKQRPNIC 407 Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348 LH+P QSG+ +L+ M R ++ Y Q+ID IR PD AISSDFI GF GET+ + R Sbjct: 408 QQLHIPAQSGNTEVLERMRRGYSRESYLQLIDLIRRELPDAAISSDFISGFCGETESEHR 467 Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFND 407 T+ L++ +GY AF F YS R T M + VD K RL + + Sbjct: 468 DTISLLNAVGYENAFMFMYSLREKTHAHRTMADDVDVETKTRRLQEVIDTFYSNLRGKSK 527 Query: 408 ACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL------NSKNHN------IGDIIKVR 454 A +G+ VL+++ + K VGR+ + V++ N N N GD I V Sbjct: 528 AEIGRRHLVLVDRISRRSKDHFVGRTDTNKKVIIPNTPIVNPSNSNNMEDIKPGDYIMVD 587 Query: 455 ITDVKISTLYGELV 468 I D TL G+ + Sbjct: 588 IVDGSEITLQGKPI 601 >gi|315586263|gb|ADU40644.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Helicobacter pylori 35A] Length = 437 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 143/435 (32%), Positives = 239/435 (54%), Gaps = 19/435 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264 + ++ EA KL NG E+ LLGQNVN + + + K FSDLL LSEI+G+ R+R Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R+++ Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441 + + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 348 EISSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEVA 407 Query: 442 SK-NHNIGDIIKVRI 455 K N G++++V I Sbjct: 408 CKEKRNPGELVRVEI 422 >gi|94502388|ref|ZP_01308846.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451055|gb|EAT14022.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 438 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 149/449 (33%), Positives = 250/449 (55%), Gaps = 27/449 (6%) Query: 37 NVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIK 96 N+ DS + + ++G+ + ++ +A++I++NTC IR+K+ +K+ + +I+ + IK Sbjct: 1 NISDSEIVSSILNNKGFIKTENLKEANIILINTCSIRDKSEKKILLRINQIKFI----IK 56 Query: 97 EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR--VVDTDY 154 + D+L+ + GC+A ++ ++N+VVGP +Y +P L+ F K+ + T + Sbjct: 57 KNNDILIGILGCMAYKFKN--IKEKKLINLVVGPDSYREIPNLINNF-FKKKGEYISTSF 113 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 S + + I+ +K +TAF+TI GCD CTFCVVP+TRG E SR ++ E Sbjct: 114 SKTETYA--DIIPKREEKK--ITAFVTIMRGCDNMCTFCVVPFTRGREKSRDPYSIIKEC 169 Query: 215 RKLIDNGVCEITLLGQNVNA--WRGKGL----------DGEKCTFSDLLYSLSEIKGLVR 262 + L G EI LLGQNV++ W G GL + E FS LL ++ L+R Sbjct: 170 KFLFKKGYKEIILLGQNVDSYLWYGGGLKKKFKIKEIKNEEIINFSKLLELVAISVPLMR 229 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ TS+P DMSD ++ + ++HLPVQSGS+RIL MNR+HT +Y +I++I Sbjct: 230 IRFCTSNPNDMSDNVLNVIKKYINICKHIHLPVQSGSNRILSLMNRKHTCEDYILLINKI 289 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQ 381 +++ P+ ++S D I GF E ++D T++L++ + Y ++ F YS R+GT +++ Sbjct: 290 KNIIPNCSLSCDIITGFCNENENDHNETLNLMNYVKYNFSYMFIYSHRIGTYAYKKLIDN 349 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 V + K RL + + N +G I ++LIE K GR+ V+ Sbjct: 350 VSLSTKKRRLTEIINLQKTHSYYRNRKYIGSIQDILIEGISTKNINFFYGRNSGNDIVIF 409 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 KN+ IGD IKV+I + +TL G++ V Sbjct: 410 PKKNYKIGDFIKVKINNCTSATLVGDIYV 438 >gi|210134467|ref|YP_002300906.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter pylori P12] gi|229890641|sp|B6JKJ8|MIAB_HELP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|210132435|gb|ACJ07426.1| 2-methylthioadenine synthetase [Helicobacter pylori P12] Length = 437 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 151/450 (33%), Positives = 244/450 (54%), Gaps = 25/450 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263 + ++ EA KL +NG E+ LLGQNVN + G E K FSDLL LSEI G+ R+ Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNY-GVRFSSEHAKVDFSDLLDKLSEIPGIERI 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R++ Sbjct: 227 RFTSPHPLHMNDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++ P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440 V + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 347 LEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEV 406 Query: 441 NSK-NHNIGDIIKVRITDVKISTLYGELVV 469 K N G+++KV I IS G L+ Sbjct: 407 TCKEKRNPGELVKVEI----ISHSKGRLIA 432 >gi|261837715|gb|ACX97481.1| ATP-binding protein [Helicobacter pylori 51] Length = 437 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 146/436 (33%), Positives = 239/436 (54%), Gaps = 21/436 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263 + ++ EA KL NG E+ LLGQNVN + G E K FSDLL LSEI+G+ R+ Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNY-GVRFSNEHAKVDFSDLLDKLSEIQGIERI 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R++ Sbjct: 227 RFTSPHPLHMNDAFLERFAKNSKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++ P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVHFDTLYSFIYSPRPFTEAGAWKERVP 346 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440 V + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 347 LEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEV 406 Query: 441 NSK-NHNIGDIIKVRI 455 K N G++++V I Sbjct: 407 ACKEKRNPGELVRVEI 422 >gi|308497096|ref|XP_003110735.1| hypothetical protein CRE_04500 [Caenorhabditis remanei] gi|308242615|gb|EFO86567.1| hypothetical protein CRE_04500 [Caenorhabditis remanei] Length = 561 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 163/477 (34%), Positives = 249/477 (52%), Gaps = 44/477 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR-N 89 +YGCQMNV D + + G+ + + AD+++L TC IR+ A +KV++ L IR N Sbjct: 85 TYGCQMNVSDMEIVRSIMSQYGFVESDQKEKADIVLLMTCSIRDGAEKKVWNQLKLIRSN 144 Query: 90 LKNSRIKEG---------GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 N R G + + GC+A+ ++L + +VN+V GP +Y LP L+ Sbjct: 145 SVNKRQIVGVLGLFSVLMNAKISYLTGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLV 204 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 A G ++ S+++ + + + + TAF++I GCD CT+CVVP+TRG Sbjct: 205 AVASGGSNAINVQLSLDETYAEVQPIRVDAESR---TAFISIMRGCDNMCTYCVVPFTRG 261 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG--------------LDGEKC- 245 E SR + +V+E R+L D G +ITLLGQNVN++R + G K Sbjct: 262 RERSRPIDSIVEEVRRLRDQGYKQITLLGQNVNSYRDMTSMDFPMNPSTTEDRVPGFKTV 321 Query: 246 --------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297 TF+ LL +++ VR R+T+ HP+D LI+ L LHLP QS Sbjct: 322 YKPKSGGLTFTSLLEKVADAAPDVRFRFTSPHPKDFPMQLIELIASRTNLCKQLHLPAQS 381 Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 G D L M R ++ Y +++D IR + P+++++SDFI GF GET++ + T+ L+ ++ Sbjct: 382 GDDETLDRMGRGYSRDLYLRLVDDIRIILPNVSLTSDFIAGFCGETEEAHQNTLSLIREV 441 Query: 358 GYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416 GY+ F F YS R T + L + V ENVKA R L L RE+ + N +G V Sbjct: 442 GYSFCFVFPYSMRGKTRAHHRLTDDVPENVKARRHLDLTTVFREEAMKLNQKLIGTEQTV 501 Query: 417 LIEKHGKEKGKLV---GRSP-WLQSVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 L+E GK K + GR+ +++V NSK+ N G KV IT+ TL E + Sbjct: 502 LLE--GKSKRDVAFSHGRTDGGVKAVFDNSKSQLNPGQYAKVLITEANSQTLKAEFI 556 >gi|308061622|gb|ADO03510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter pylori Cuz20] Length = 437 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 144/435 (33%), Positives = 239/435 (54%), Gaps = 19/435 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264 + ++ EA KL NG E+ LLGQNVN + + + K FSDLL LSEI+G+ R+R Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R+++ Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441 V + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKAHVVLVENRREIDNQIVGFEGRSDTGKFIEVA 407 Query: 442 SK-NHNIGDIIKVRI 455 K N G++++V I Sbjct: 408 CKEKRNPGELVRVEI 422 >gi|195330093|ref|XP_002031743.1| GM26169 [Drosophila sechellia] gi|194120686|gb|EDW42729.1| GM26169 [Drosophila sechellia] Length = 583 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 150/470 (31%), Positives = 246/470 (52%), Gaps = 39/470 (8%) Query: 32 YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 YGCQMN D+ + + GY R ++AD+I+L TC +R+ A +++++ L +R +K Sbjct: 99 YGCQMNTNDTEVVFSILKENGYMRCQEPEEADVIMLVTCAVRDGAEQRIWNRLKHLRAMK 158 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150 N R L + + GC+A+ E++L + V+V+ GP +Y LP LL +R +G + Sbjct: 159 NKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISRHYGNSAI 218 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + S+++ + + V TAF++I GCD CT+C+VP+TRG E SR L+ + Sbjct: 219 NVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASI 275 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---------------------CTFSD 249 V E + L + GV E+TLLGQNVN++R + E+ F+ Sbjct: 276 VAEVKALAEQGVKEVTLLGQNVNSYRDRSAQEEQESLKATPVPGFSTVYKPKAGGTPFAA 335 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL S+++ +R+R+T+ HP+D SD +++ D + LHLP QSG+ ++L+ M R Sbjct: 336 LLRSVAQAVPEMRIRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLERMRRG 395 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 ++ Y +++ IR PD+ +SSDFI GF GET+++F+ T L+ ++ Y A+ F YS Sbjct: 396 YSREAYLELVQHIRQFLPDVGLSSDFICGFCGETEEEFQDTESLIQQVQYNVAYLFAYSM 455 Query: 370 RLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGK 427 R T + V NVK ERL + + R+ + G+ +LIE K + Sbjct: 456 REKTTAHRRYKDDVPINVKNERLKRMVQVFRDGAKQLHRKMEGKEQLILIEGKSKRSDSH 515 Query: 428 LVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVKISTLYG 465 GR+ V++ S K+ +GD + VRI + L G Sbjct: 516 WFGRNDANIKVIVPSIEVPISGDSTARKSFGVGDFLAVRIEESNSQVLKG 565 >gi|308182443|ref|YP_003926570.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter pylori PeCan4] gi|308064628|gb|ADO06520.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter pylori PeCan4] Length = 437 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 146/436 (33%), Positives = 239/436 (54%), Gaps = 21/436 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ N ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSDHLLSELSKLDYKETNDPKTADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG E+S Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKELSI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263 + ++ EA KL +NG E+ LLGQNVN + G E K FSDLL LSEI G+ R+ Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNY-GVRFSSEHAKVDFSDLLDKLSEISGIERI 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R++ Sbjct: 227 RFTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++ P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440 V + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 347 LEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREIDNQIVGFEGRSDTGKFIEV 406 Query: 441 NSK-NHNIGDIIKVRI 455 K N G++++V I Sbjct: 407 ACKEKRNPGELVRVEI 422 >gi|148656015|ref|YP_001276220.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Roseiflexus sp. RS-1] gi|229890636|sp|A5UUG7|MIAB_ROSS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|148568125|gb|ABQ90270.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Roseiflexus sp. RS-1] Length = 476 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 158/449 (35%), Positives = 242/449 (53%), Gaps = 27/449 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R++V + GCQMNV DS R+E GY +DA IVLN+C +R A E++ L Sbjct: 26 RRYYVWTVGCQMNVSDSERLEAALQGVGYAPAERPEDASFIVLNSCSVRASAEERILGKL 85 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR-RSPIVNVVVGPQTYYRLPELLERA 143 ++ LK ++ D VV+ GC+ + I + R P+V+ V P + E+L A Sbjct: 86 SEVQRLK----RKHPDTKVVLWGCMVGPGNQSIFQSRLPMVDHFVSPSA---VDEVLALA 138 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + Y +E+ ++ D V+ + IQ GC+ C+FCV+P RG E Sbjct: 139 ------PNPIYQLEEPALPVARWD-----HPPVSVHVPIQYGCNMSCSFCVIPLRRGRER 187 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR L ++V+E R+++ G EITLLGQ V++W G L G + +DLL ++ +I GL+RL Sbjct: 188 SRPLDEIVEECRRIVARGAKEITLLGQIVDSW-GHDLPG-RPDLADLLRAVHDIPGLLRL 245 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ TSHP M+D LI A +L MP ++LPVQ+G D +LK M R +T YR +I +IR Sbjct: 246 RFLTSHPAWMTDRLIAAVAELPRCMPDINLPVQAGDDALLKIMRRGYTVQRYRDLIAKIR 305 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM----L 379 PD+++++D IVG PGET + F T L++ I + + +S R GT ++M Sbjct: 306 DAIPDVSLTTDVIVGHPGETRERFEGTKRLLEDIRFDKVHIAAFSSRPGTRAADMELDPT 365 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 V E K R + L++ + N + Q +EVL+E G+ KGK GR+P + V Sbjct: 366 LAVPEGEKQLRRIELERLQEQIAAERNARFLHQTVEVLVE--GEHKGKWRGRTPGNKLVF 423 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + G + +V IT +L G L Sbjct: 424 FSDPDDWTGRLARVIITHTGPWSLQGVLA 452 >gi|83281193|dbj|BAD15110.2| similar to CDK5 regulatory subunit-associated protein [Nicotiana tabacum] Length = 623 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 167/496 (33%), Positives = 255/496 (51%), Gaps = 51/496 (10%) Query: 22 IVPQ-RFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEK 79 ++P+ R + ++YGCQMNV D + + + GY E V ++A++I +NTC IR+ A K Sbjct: 109 VMPRGRIYHETYGCQMNVNDMEIVLSIMKNAGYTESVEVPENAEIIFINTCAIRDNAELK 168 Query: 80 VYS------FLGR--IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131 V+ FL R N+ + R + V V GC+A+ ++IL +V+VV GP Sbjct: 169 VWQRLNYFWFLKRQWKSNVASGRSQSAHPPKVSVLGCMAERLKDKILDSDKMVDVVCGPD 228 Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 Y LP LLE +G++ ++T S+E+ + ++ V N ++AF+++ GC+ C+ Sbjct: 229 AYRDLPRLLEEVDYGQKGINTLLSLEETYADINPVRISKN---SISAFVSVMRGCNNMCS 285 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA----------------W 235 FC+VP+TRG E SR + +V E +L GV E+TLLGQNVN+ W Sbjct: 286 FCIVPFTRGRERSRPVESIVKEVAELWKEGVKEVTLLGQNVNSYNDTSGVENPAEPAVSW 345 Query: 236 RGKGLDGEKCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288 C F+DLL L+ +R RYT+ HP+D D L+ D + Sbjct: 346 ELSDGFSSMCKVKHVGLRFADLLDRLATEFPEMRFRYTSPHPKDFPDDLLYVMRDRYNIC 405 Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348 +HLP QSGS +L+ M R +T Y ++ +IR + PD+ ISSDFI GF GET++D Sbjct: 406 KSIHLPAQSGSSAVLERMRRGYTREAYLDLVKKIRDIIPDMGISSDFICGFCGETEEDHE 465 Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFND 407 T+ LV + Y A+ F YS R T ++ V ++VK RL L + R D Sbjct: 466 DTLSLVKAVCYDMAYMFAYSMREKTHAHRKYVDDVPDDVKQRRLTELIEAFRGSTGQNYD 525 Query: 408 ACVGQIIEVLIEKHGKEK--GKLVGRS-----------PWLQSVVLNSK-NHNIGDIIKV 453 + +G + VL+E K +L+G+S P V N K N IGD ++V Sbjct: 526 SKIGTLQLVLVEGPNKRAPDTELIGKSDRGHRVSFTNLPIPDKVDNNGKRNPKIGDYVEV 585 Query: 454 RITDVKISTLYGELVV 469 IT ++L+GE + Sbjct: 586 HITKSTRASLFGEALA 601 >gi|332297280|ref|YP_004439202.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Treponema brennaborense DSM 12168] gi|332180383|gb|AEE16071.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Treponema brennaborense DSM 12168] Length = 470 Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 151/482 (31%), Positives = 257/482 (53%), Gaps = 60/482 (12%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +F ++YGCQMN +S +E + ++G+ ++ + AD+ ++NTC +R A +++ LG Sbjct: 3 YFFETYGCQMNKAESASLEQLLIARGWTASDTPESADMAIINTCSVRATAENRIFGRLGW 62 Query: 87 I----------RNLKNSRIKEGG--------DLLVVVAGCVAQAEGEEILRRSPIVNVVV 128 ++ KN+ + L +VV GC+A+ + + ++ P+++ VV Sbjct: 63 FSALKAVRSGSKDAKNASFPDAAREFASGRPPLTLVVTGCMAERLLDSLQKQYPVIDYVV 122 Query: 129 G---PQTYYRLPELLERARFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183 G Q + + + +E+ R VVD + YS F +S G + TAF+ I Sbjct: 123 GNFQKQHFQDIIDAVEQQR-APFVVDEEPVYS----FAPVSWEPGAF------TAFVPIM 171 Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR------- 236 GC+ FCT+C+VPY RG E+SRS + ++ E +L + V EITLLGQNVN++R Sbjct: 172 HGCNNFCTYCIVPYVRGREVSRSPADILSELDQLSAHNVREITLLGQNVNSYRWDCNAET 231 Query: 237 GKGLDGEKCT--------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288 G G+ +D L + G VR + +SHP+D+SD LI VL Sbjct: 232 GAAETGDSAVDFPALVQLIADHLRKTASPIGWVR--FMSSHPKDLSDRLIDVIAREPVLC 289 Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348 ++HLPVQ GS +L+ MNRR+T +Y ++ RIR+ PD ++++D ++GFPGE D DF Sbjct: 290 RHIHLPVQHGSSDVLRRMNRRYTREQYLDLVSRIRTKLPDASLTTDILIGFPGENDADFE 349 Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408 T+ L++ + Y A+ + Y+PR GTP + Q+ K RL K++ + Q+ A Sbjct: 350 QTVSLMESVRYQAAYMYYYNPREGTPAAEYDGQIPLETKKSRL----KRIIDMQLEITRA 405 Query: 409 C----VGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463 +G ++VL E ++ G+L+G++ + VV + IG ++V + ++ +T+ Sbjct: 406 ETAKRLGSTVKVLAESVSRDNPGELLGKTEQDERVVFAAPRSCIGTFVQVLLVELTGNTI 465 Query: 464 YG 465 G Sbjct: 466 RG 467 >gi|269837050|ref|YP_003319278.1| RNA modification enzyme, MiaB family [Sphaerobacter thermophilus DSM 20745] gi|269786313|gb|ACZ38456.1| RNA modification enzyme, MiaB family [Sphaerobacter thermophilus DSM 20745] Length = 460 Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 150/449 (33%), Positives = 239/449 (53%), Gaps = 26/449 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R+ + + GCQMN +S + M GY + + ++AD+I++N+C +R+ A +KV L Sbjct: 21 KRYCIWTIGCQMNEAESAKAAAMLSQAGYLQTHLEEEADVIIVNSCVVRQAAEDKVAGKL 80 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL----PELL 140 G + LK R D+ + + GC+ + + + R P V++ GP + RL PEL Sbjct: 81 GSLARLKRVR----PDVRIALTGCMVTGQEQALAERFPHVDLFYGPSQFERLVEIAPELA 136 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 VDTD + F + VTAF+ I GC+ C++C+VPY RG Sbjct: 137 H--------VDTDLAELPHFYQPDAAGSD------VTAFVPIIYGCNFVCSYCIVPYRRG 182 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E SR +++V+ E +L + GV E+TLLGQ VNA+ G L G +DLL +++EI G+ Sbjct: 183 RERSRPMAEVIAEVERLAERGVKEVTLLGQTVNAY-GHDLPGSP-DLADLLTAVNEIPGI 240 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R+ TSHP+ MSD +++A L +++LPVQ+G D +L+ M R +T YR+ I Sbjct: 241 ERIRFLTSHPKYMSDRIVQAVATLPKACEHINLPVQAGDDEVLRRMRRTYTVDFYRERIA 300 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR P + +S+D IVGFPGET++ F+ T+DL+ ++ + YSPR T + + Sbjct: 301 YIRETIPGVTVSTDIIVGFPGETEEQFQRTLDLLAELRLDKVHVAMYSPRPRTLSARWED 360 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 + + K R ++K + N +G E+L++ G KG+ GR+ V Sbjct: 361 DIPWDEKRRRHQAVEKLQAQILGERNRGYLGATFEILVD--GMAKGRWRGRTRGNDLVFF 418 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 + G + VRIT+ L GE V Sbjct: 419 EAPGDWKGKFVDVRITEASPWYLLGEPVA 447 >gi|208434215|ref|YP_002265881.1| conserved hypothetical ATP-binding protein [Helicobacter pylori G27] gi|229890642|sp|B5ZA35|MIAB_HELPG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|208432144|gb|ACI27015.1| conserved hypothetical ATP-binding protein [Helicobacter pylori G27] Length = 437 Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 144/435 (33%), Positives = 239/435 (54%), Gaps = 19/435 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264 + ++ EA KL +NG E+ LLGQNVN + + + K FSDLL LSEI G+ R+R Sbjct: 168 PMDLILKEAEKLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEISGIERIR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R+++ Sbjct: 228 FTSPHPLHMNDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441 V + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEVA 407 Query: 442 SK-NHNIGDIIKVRI 455 K N G++++V I Sbjct: 408 CKEKRNPGELVEVEI 422 >gi|332673110|gb|AEE69927.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Helicobacter pylori 83] Length = 437 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 146/436 (33%), Positives = 239/436 (54%), Gaps = 21/436 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKIADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263 + ++ EA KL NG E+ LLGQNVN + G E K FSDLL LSEI+G+ R+ Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNY-GTRFSSEHAKVDFSDLLDKLSEIQGIERI 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++R++ Sbjct: 227 RFTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++ P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440 V + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 347 LEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEV 406 Query: 441 NSK-NHNIGDIIKVRI 455 K N G++++V I Sbjct: 407 ACKEKRNPGELVRVEI 422 >gi|269797947|ref|YP_003311847.1| MiaB-like tRNA modifying enzyme [Veillonella parvula DSM 2008] gi|269094576|gb|ACZ24567.1| MiaB-like tRNA modifying enzyme [Veillonella parvula DSM 2008] Length = 431 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 144/424 (33%), Positives = 236/424 (55%), Gaps = 18/424 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N YD+ M+ +F YE V+ + AD+ V+NTC + +K R L Sbjct: 8 TLGCRVNQYDTDAMKGLFLQNNYEAVDFDEKADIYVINTCSVTNMGEKKS-------RQL 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ D V+V GC AQ + + I VN+V+G ++ EL+E+ +R + Sbjct: 61 IRKAKRQNEDAYVIVTGCYAQLDPDAIAAIDG-VNLVIGTNNRSKIVELVEQLESTERQI 119 Query: 151 DT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + D E FE + + ++ R AF+ IQEGC+ +C FC++PYTRG SR + Sbjct: 120 NAVRDIMKESNFEEMPLFGNESDKTR---AFMKIQEGCNNYCAFCIIPYTRGKLKSRKVD 176 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V EA++L+D+G EI L G ++ + G L G + T +D++ +L EI L R+R+ + Sbjct: 177 DIVQEAKRLVDHGFHEIVLTGIHLGNY-GVELPG-RPTLADVVKALLEIPNLYRIRFGSI 234 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++SD L++ + P+LHLP+Q+GSD +LK M R +T EY+ +I +RS D Sbjct: 235 ESVEVSDELVELMATNKRVCPHLHLPLQAGSDHVLKLMKRHYTLQEYKDLITSLRSRIKD 294 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I++D I GFP ETD+DF T++ V +IG+ +F YS R GTP + M +QV E VK Sbjct: 295 LSITTDIIAGFPQETDEDFEETLNTVREIGFTHIHAFPYSIREGTPAATMADQVPEAVKK 354 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-RSPWLQSVVLNSKNHNI 447 R+ L + + + +G+ E+LIEK +E G +G + ++ V + I Sbjct: 355 TRVALLNGLSQSGYERYAKSRIGKPGEILIEK--EENGYYMGLTNEYINGKVKSDGTRKI 412 Query: 448 GDII 451 GD++ Sbjct: 413 GDLV 416 >gi|297379491|gb|ADI34378.1| RNA modification enzyme, MiaB family [Helicobacter pylori v225d] Length = 437 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 146/436 (33%), Positives = 238/436 (54%), Gaps = 21/436 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRL 263 + ++ EA KL NG E+ LLGQNVN + G E K FSDLL L EI+G+ R+ Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNY-GTRFSSEHAKVDFSDLLDKLGEIQGIERI 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+T+ HP MSD ++ + +H+P+QSGS +LK M R ++ + ++R++ Sbjct: 227 RFTSPHPLHMSDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLK 286 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++ P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 287 ALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVP 346 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVL 440 V + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 347 LEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREIDNQIVGFEGRSDTGKFIEV 406 Query: 441 NSK-NHNIGDIIKVRI 455 K N G++++V I Sbjct: 407 ACKEKRNPGELVRVEI 422 >gi|307181219|gb|EFN68916.1| CDK5RAP1-like protein [Camponotus floridanus] Length = 533 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 159/478 (33%), Positives = 255/478 (53%), Gaps = 43/478 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ + + YGCQMN+ D+ + + S GY+ S+DDAD+I+L TC IR+ A +KV++ L Sbjct: 38 QKVYFEIYGCQMNINDADIIWSILKSHGYKHTQSVDDADIILLVTCSIRDNAEQKVWNKL 97 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ + K + + + GC+A+ +IL + +V+V+ GP +Y LP LL Sbjct: 98 EMLNGIRKKKKKNS--IKIGLLGCMAERLKTKILDKGKLVDVIAGPDSYKDLPRLLA-VT 154 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + ++ S ++ + ++ V + V A+++I GCD CT+C+VP+TRG E S Sbjct: 155 DNETAINVVLSFDETYADVTPVRLDQD---SVGAYVSIMRGCDNMCTYCIVPFTRGRERS 211 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-----------------GKGL----DGE 243 R ++ ++DE R+L D GV EITLLGQNVN++R KG + Sbjct: 212 RPIASILDEVRQLSDQGVKEITLLGQNVNSYRDLSQSEFVVPTDMQTHLAKGFKTVYKNK 271 Query: 244 K--CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301 K FSDLL +S I +R+R+T+ HP+D D ++ + + +HLP QSG+ Sbjct: 272 KGGLRFSDLLDKVSLINPEIRIRFTSPHPKDFPDEVLHLIAERPNICKQIHLPAQSGNSA 331 Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361 +L M R +T Y ++ IR++ PDI +SSDFI GF GET+++F+ T+ L+D++ Y Sbjct: 332 VLDRMRRGYTREAYLDLVYHIRNILPDIYLSSDFIAGFCGETEEEFQDTLSLIDEVKYNN 391 Query: 362 AFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 A+ + YS R T + V+ +VK ER+ + R++ N +GQ VL+E Sbjct: 392 AYLYPYSMREKTTAHRRYKDDVESHVKIERMNRMIMLYRKEVEKLNKVQIGQHQLVLVEG 451 Query: 421 HGKEKGK-LVGRSPWLQSVVLNSKNHNI------------GDIIKVRITDVKISTLYG 465 K + + L GR+ V+L S I GD I RI + TL G Sbjct: 452 PSKRRSEYLQGRNDGNVRVILLSTVTRINRHSATTRQIQPGDYIVARIDNANSQTLRG 509 >gi|332019786|gb|EGI60247.1| CDK5RAP1-like protein [Acromyrmex echinatior] Length = 544 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 151/443 (34%), Positives = 241/443 (54%), Gaps = 31/443 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ + + +GCQMNV D+ + + S GY+ +DDAD+++L TC IR+ A +KV+ L Sbjct: 58 QKVYFEIFGCQMNVNDADIVWSILKSHGYKHTECLDDADIVLLVTCSIRDNAEQKVWHKL 117 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++N K+ L + GC+A+ +IL R +V+V+ GP +Y LP LL Sbjct: 118 ENLNGVRNK--KKRTTKLPMKIGCMAERLKTKILDRGKLVDVIAGPDSYKDLPRLLA-VT 174 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + ++ S ++ + ++ V + A+++I GCD CT+C+VP+TRG E S Sbjct: 175 DDETAINVLLSFDETYADVTPVRLNQD---STEAYVSIMRGCDNMCTYCIVPFTRGRERS 231 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-----------------GKGLD----GE 243 R ++ ++DE R+L D GV EITLLGQNVN++R KG + Sbjct: 232 RPIASILDEVRQLSDQGVKEITLLGQNVNSYRDLSKSEFILSPNMETQLAKGFKTVYKNK 291 Query: 244 K--CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301 K FSDLL +S I +R+R+T+ HP+D D ++ + + +HLP QSG+ Sbjct: 292 KGGLRFSDLLDKVSLINPEIRIRFTSPHPKDFPDEVLHLIAERPNICKQIHLPAQSGNSV 351 Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361 IL+ M R +T Y ++ IR++ PD+ ISSDFI GF ET++ F+ T+ L++++ Y Sbjct: 352 ILERMRRGYTREAYLDLVYHIRNILPDVYISSDFIAGFCSETEEQFQDTLSLIEEVKYNN 411 Query: 362 AFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 AF F YS R T + V+ + K ER+ + R++ N A +GQ VL+E+ Sbjct: 412 AFLFAYSMREKTTAHRRYKDDVETHTKTERMNRMIALYRKEVEKLNKAQIGQHQLVLVER 471 Query: 421 HGKEKG-KLVGRSPWLQSVVLNS 442 K +L GR+ V+L S Sbjct: 472 TSKRSDQQLQGRNDGNVRVILPS 494 >gi|302874325|ref|YP_003842958.1| RNA modification enzyme, MiaB family [Clostridium cellulovorans 743B] gi|307689408|ref|ZP_07631854.1| RNA modification enzyme, MiaB family protein [Clostridium cellulovorans 743B] gi|302577182|gb|ADL51194.1| RNA modification enzyme, MiaB family [Clostridium cellulovorans 743B] Length = 433 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 145/435 (33%), Positives = 247/435 (56%), Gaps = 24/435 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N+Y+S M + F S+GY+ V+ + A++ V+NTC + +K ++ + + Sbjct: 7 TLGCRVNIYESEAMTEKFKSEGYDVVDFDEKAEVYVINTCTVTNMGDKKSRQYISKAK-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFGKR 148 K+ + +V V GC +Q +E+ S I V+VV+G + + + RA K Sbjct: 65 -----KKNPEAVVAVVGCYSQTSPDEV---SAIEGVDVVLGTRNKGDIVYYVNRAMDTKE 116 Query: 149 --VVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 VV D FE L I D G R AFL +Q+GC++FC++C++PY RG S+ Sbjct: 117 KFVVVKDVLRNKVFEELKIEDFEGKTR-----AFLKVQDGCNRFCSYCLIPYARGAVCSK 171 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 + ++DE KL DNG EI L G ++ ++ G+D E+ T D++ + +I G+ R+R Sbjct: 172 NPETIIDEVNKLADNGFKEIILSGIHIASY---GVDLEERKTLMDIIEEIHKINGIKRIR 228 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + PR +D +I+ ++ + P+ HL +QSG D LK MNR++TA EY + ++R Sbjct: 229 IGSVEPRFFTDEVIEKMASMEKMCPHFHLSLQSGCDATLKRMNRKYTAEEYFNTVVKLRE 288 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+++I++D IVGFPGET ++F T + + ++ A+ FKYSPR GT ++M + V Sbjct: 289 RIPNVSITTDVIVGFPGETAEEFNETFNYLKELRVAKMHIFKYSPRKGTKAADMKDDVHG 348 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +K ER LQ+ RE + +F +G+ +EVL+E+ K+ + +G + V+++S Sbjct: 349 TIKEERSKLLQELDRENEKNFIQDFIGEKLEVLVEEKLKDDNRYIGYTSNYIKVIIDSTE 408 Query: 445 HNIGDIIKVRITDVK 459 +G II VR+ + K Sbjct: 409 DIVGKIITVRLIENK 423 >gi|198415552|ref|XP_002127642.1| PREDICTED: similar to CDK5 regulatory subunit associated protein 1 [Ciona intestinalis] Length = 618 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 155/476 (32%), Positives = 255/476 (53%), Gaps = 42/476 (8%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 + + YGCQMNV D + GY++ ++ AD+I+L TC IREKA +K+++ L ++ Sbjct: 120 YFEMYGCQMNVNDGEYAWAILKKAGYKKTTDINTADVIMLVTCSIREKAEDKIWNRLKQL 179 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-G 146 + K + G + ++ GC+A+ ++I+ + V++V GP Y LP LLE+A Sbjct: 180 KTHKQNYHTPGYPKIGIL-GCMAERLKKKIVEKEKAVDIVAGPDAYRDLPRLLEQATTDS 238 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++T SV++ + + V + K TAF++I GCD C++C+VP+TRG E SR Sbjct: 239 TTAINTMLSVDETYADIMPVRFDQDSK---TAFVSIMRGCDNMCSYCIVPFTRGRERSRP 295 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWR--------------GKGLDGEKCT------ 246 ++ +++E R L D G+ ++ LLGQNVN++R G G K Sbjct: 296 VTSILEEIRILSDQGIKQVNLLGQNVNSYRDLSETQHSAVDAIAGNMSRGFKTIYKPKHG 355 Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 F+DLL +S++ +R+R+ + HP+D D +++ + + + +HLP QSGS +L Sbjct: 356 GLRFADLLDRVSQVDPEMRIRFISPHPKDFPDEVLQIISERENICKQIHLPAQSGSSNVL 415 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 M R HT +Y ++DRIR++ P++ +S+D I GF GETD D T+ L+ + Y AF Sbjct: 416 NLMRRGHTREDYLNLVDRIRTLIPNVVLSTDIISGFCGETDSDHEDTLSLMSLVKYEYAF 475 Query: 364 SFKYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-H 421 FKYS R T M + V E +K++RL + K ++ + + VG+ + VL+EK Sbjct: 476 LFKYSIRQKTHAYHKMNDDVPEEIKSQRLQEVIKVYQDVLPTVHQKTVGKTLLVLVEKDK 535 Query: 422 GKEKGKLVGRSPW----------LQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465 K L GR+ + S V + I GD I V++T K ++ G Sbjct: 536 TKVPNTLQGRTDGNVKVFIPNYDVASSVTSQSTKTICTGDYIAVKVTSYKPNSYRG 591 >gi|167945967|ref|ZP_02533041.1| tRNA-i(6)A37 modification enzyme MiaB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 242 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 123/245 (50%), Positives = 163/245 (66%), Gaps = 6/245 (2%) Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-VVDTDYSVEDKFERL 163 V GCVA EG+ I +R+P V++V GPQT +RLPE++ R VVD + +KF+RL Sbjct: 3 VGGCVASQEGDAIRQRAPYVDLVFGPQTLHRLPEMIREVRAQHHPVVDVSFPEIEKFDRL 62 Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223 R G TAF++I EGC K+CT+CVVP+TRG EISR V+ E L GV Sbjct: 63 P-----EPRAEGPTAFVSIMEGCSKYCTYCVVPFTRGEEISRPFDDVIAEVVGLAAQGVR 117 Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283 E+ LLGQNVNA+RG+ DGE + L+ ++ I G+ R+R+TTSHP + SD LI+A+G Sbjct: 118 EVNLLGQNVNAYRGEMYDGETADLALLIEYVAAIDGIERIRFTTSHPLEFSDSLIEAYGR 177 Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343 + L+ ++HLPVQSGSDR+L M R H A EY+ I ++R VRPDI ISSDFIVGFPG+ Sbjct: 178 VPELVSFVHLPVQSGSDRVLAMMKRGHMAIEYKAKIRKLREVRPDITISSDFIVGFPGDD 237 Query: 344 DDDFR 348 F+ Sbjct: 238 RAGFQ 242 >gi|282850176|ref|ZP_06259555.1| MiaB-like protein [Veillonella parvula ATCC 17745] gi|294791828|ref|ZP_06756976.1| Fe-S oxidoreductase [Veillonella sp. 6_1_27] gi|294793689|ref|ZP_06758826.1| Fe-S oxidoreductase [Veillonella sp. 3_1_44] gi|282579669|gb|EFB85073.1| MiaB-like protein [Veillonella parvula ATCC 17745] gi|294455259|gb|EFG23631.1| Fe-S oxidoreductase [Veillonella sp. 3_1_44] gi|294457058|gb|EFG25420.1| Fe-S oxidoreductase [Veillonella sp. 6_1_27] Length = 431 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 144/424 (33%), Positives = 236/424 (55%), Gaps = 18/424 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N YD+ M+ +F YE V+ + AD+ V+NTC + +K R L Sbjct: 8 TLGCRVNQYDTDAMKGLFLQNNYEAVDFDEKADIYVINTCSVTNMGEKKS-------RQL 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ D V+V GC AQ + + I VN+V+G ++ EL+E+ +R + Sbjct: 61 IRKAKRQNEDAYVIVTGCYAQLDPDAIAAIDG-VNLVIGTNNRSKIVELVEQLESTERQI 119 Query: 151 DT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + D E FE + + ++ R AF+ IQEGC+ +C FC++PYTRG SR + Sbjct: 120 NAVRDIMKESNFEEMPLYGNESDKAR---AFMKIQEGCNNYCAFCIIPYTRGKLKSRKVD 176 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V EA++L+D+G EI L G ++ + G L G + T +D++ +L EI L R+R+ + Sbjct: 177 DIVQEAKRLVDHGFHEIVLTGIHLGNY-GVELPG-RPTLADVVKALLEIPNLYRIRFGSI 234 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++SD L++ + P+LHLP+Q+GSD +LK M R +T EY+ +I +RS D Sbjct: 235 ESVEVSDELVELMATNKRVCPHLHLPLQAGSDHVLKLMKRHYTLQEYKDLITSLRSRIKD 294 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I++D I GFP ETD+DF T++ V +IG+ +F YS R GTP + M +QV E VK Sbjct: 295 LSITTDIIAGFPQETDEDFEETLNTVREIGFTHIHAFPYSIREGTPAATMADQVPEAVKK 354 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-RSPWLQSVVLNSKNHNI 447 R+ L + + + +G+ E+LIEK +E G +G + ++ V + I Sbjct: 355 TRVALLNGLSQSGYERYAKSRIGKPGEILIEK--EENGYYMGLTNEYINGKVKSDGTRKI 412 Query: 448 GDII 451 GD++ Sbjct: 413 GDLV 416 >gi|121551156|gb|ABM55768.1| MiaB [Pasteuria ramosa] Length = 361 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 141/357 (39%), Positives = 207/357 (57%), Gaps = 15/357 (4%) Query: 117 ILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE----DKFERLSIVDGGYNR 172 IL++ P V+++ G +RLP LLE A F K +V +S E ++ RL R Sbjct: 11 ILQKYPYVDLLFGTHNIHRLPYLLEDAYFNKEIVVEVWSREGEIVEQIPRL--------R 62 Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232 + AF+ I GCDKFCT+C+VPYTRG E SR +++E ++L + G E+TLLGQNV Sbjct: 63 HDQLRAFVNIMYGCDKFCTYCIVPYTRGKERSRQPEDIIEEIKQLAEQGYQEVTLLGQNV 122 Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292 NA+ GK D S+LL LS+I + R+R+TTSHP+D D LI L+ + H Sbjct: 123 NAY-GKDFDKFPYRLSNLLDDLSKI-NISRVRFTTSHPKDCDDELINVLAKRGNLVEHFH 180 Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 LPVQSG D ILK M R HT +Y + R+R PDI +++D IVGFPGET++ F T++ Sbjct: 181 LPVQSGDDTILKRMGRGHTREQYLMFVQRLREAIPDIVLTTDIIVGFPGETEEQFLNTIE 240 Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412 L+ ++ + FSF YSPR GTP ++M + + K+ RL LQ + ++ N +G Sbjct: 241 LLKEVQFDAVFSFIYSPRSGTPAADMECNLLDVTKSNRLQYLQTVQNDISLACNKLLIGN 300 Query: 413 IIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +EVL+E K++ +L GR+ + V + IG + V IT L+G+++ Sbjct: 301 KLEVLVEGQSKKRQDRLTGRTRTNKLVHFVGSSELIGQLKWVEITSTNSFFLHGQII 357 >gi|229890672|sp|B2USA0|MIAB_HELPS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase Length = 437 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 143/435 (32%), Positives = 239/435 (54%), Gaps = 19/435 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264 + ++ EA KL NG E+ LLGQNVN + + + K FSDLL LSEI+G+ R+R Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++++++ Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSTVLKMMRRGYSKEWFLNRVEKLKA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441 V + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRREIDNQIVGFEGRSDTGKFIEVA 407 Query: 442 SK-NHNIGDIIKVRI 455 K N G++++V I Sbjct: 408 CKEKRNPGELVRVEI 422 >gi|260655072|ref|ZP_05860560.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Jonquetella anthropi E3_33 E1] gi|260630183|gb|EEX48377.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Jonquetella anthropi E3_33 E1] Length = 432 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 149/448 (33%), Positives = 236/448 (52%), Gaps = 25/448 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 +K YGCQMN YD+ +++ + G+ + + AD ++ C IR+KA KV+S LGR Sbjct: 1 MKVYGCQMNQYDASKIQTALTALGWHETDE-ETADAVIFVACSIRDKAEHKVWSELGRYA 59 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-RFGK 147 R + G V V C+AQ G E+ R P V VV GP+ LP L A G Sbjct: 60 E----RWQAEGKPAVAVTSCIAQNVGTEMAGRFPWVRVVSGPRHIGDLPAALSDALDNGN 115 Query: 148 R--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 R ++D D + + V R A +TI GCD FCT+C+VPY RG SR Sbjct: 116 RHTLLDDDPRAVRELDVPPSV-----RSFQWKASVTISHGCDNFCTYCIVPYVRGRFASR 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLR 264 +++ E R L+ G EITLLGQNV+ W GLD F+DLL ++ G+ LR Sbjct: 171 PAEEILAEVRSLVAGGAKEITLLGQNVDTW---GLDCPGGMRFADLLELVAREPGVEWLR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TS+P D + +++ + P ++LP+Q+GS+R+L++MNRR++ EY + IR Sbjct: 228 FMTSYPTDFTVDVVETMVRHSNICPSINLPIQAGSERVLRAMNRRYSLEEYADTMKLIRD 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P++ ++SD IVGFPGET+++F+ ++ +++ + + YSPR GTP + M Q+ Sbjct: 288 GLPEVGLTSDLIVGFPGETEEEFQCSLAALERFRFDMVHTAAYSPRQGTPAAKMKNQIPA 347 Query: 385 NVKAERLLCLQKKLREQQVS----FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 VK RL ++ + Q S N + VG+ +VL++ + + R+ + V+L Sbjct: 348 AVKERRL----NEVNDLQTSIARQINQSLVGRTYKVLVDGPAPKGDYMEARTATDKVVLL 403 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + G + +I + L G ++ Sbjct: 404 KGAGASFGQFVTAKIDSAESWCLKGTVL 431 >gi|291276480|ref|YP_003516252.1| tRNA modification enzyme MiaB [Helicobacter mustelae 12198] gi|290963674|emb|CBG39506.1| Putative tRNA modification enzyme MiaB [Helicobacter mustelae 12198] Length = 417 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 136/374 (36%), Positives = 215/374 (57%), Gaps = 18/374 (4%) Query: 51 QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA 110 +GYE +ADLI++NTC +REK K++S +G+ +K + K G V GC A Sbjct: 9 EGYELTQDAKEADLILINTCSVREKPERKLFSEIGQFTKIKKNGAKIG------VCGCTA 62 Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170 GE+I++R+P V+ V+G + ++ E+L R + + VD D S + D Sbjct: 63 SHMGEQIIKRAPSVDFVLGARNVSKITEVLHRPKAVEVAVDYDDST-------YVYD--I 113 Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 + G+ A L I GCDK C +C+VP+TRG EIS L ++ EA KL+ G EI LLGQ Sbjct: 114 PHQAGIKALLNISIGCDKKCAYCIVPHTRGKEISIPLDLLLTEANKLVSRGTKEILLLGQ 173 Query: 231 NVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289 NVN + + + F+ LL+ L +I GL R+R+T+ HP M+D ++ + Sbjct: 174 NVNNYGARFSVPHAPINFTGLLHELGKIDGLERIRFTSPHPLHMNDEFLEEFAQNPKVCK 233 Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349 +H+P+QSGS ILK+M R +T Y I+++R++ P++ IS+D IVGFPGE+D DF+ Sbjct: 234 SIHIPLQSGSSAILKAMRRGYTKEWYLNRIEKLRALVPEVGISTDIIVGFPGESDADFQD 293 Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNM--LEQVDENVKAERLLCLQKKLREQQVSFND 407 T+D+++ + + +SF YSPR T ++ +V + V A RL LQ + +E V Sbjct: 294 TLDVLEAVRFDTMYSFVYSPRPYTESASWGAEREVPKEVAARRLAMLQNRHKEILVEDAK 353 Query: 408 ACVGQIIEVLIEKH 421 +G++ +L+E + Sbjct: 354 KEIGKVYTILVENN 367 >gi|308063131|gb|ADO05018.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter pylori Sat464] Length = 437 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 144/435 (33%), Positives = 239/435 (54%), Gaps = 19/435 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y+ + ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K + + L I GCDK C +C+VP TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPRTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLR 264 + ++ EA KL NG E+ LLGQNVN + + + K FSDLL LSEI+G+ R+R Sbjct: 168 PMDLILKEAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP M+D ++ + +H+P+QSGS+ +LK M R ++ + ++R+++ Sbjct: 228 FTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSNAVLKMMRRGYSKEWFLNRVERLKA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P++ IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPL 347 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441 V + RL LQ + +E VG+ VL+E + ++V GRS + + + Sbjct: 348 EVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENGREIDNQIVGFEGRSDTGKFIEVA 407 Query: 442 SK-NHNIGDIIKVRI 455 K N G++++V I Sbjct: 408 CKEKRNPGELVRVEI 422 >gi|158320272|ref|YP_001512779.1| MiaB-like tRNA modifying enzyme [Alkaliphilus oremlandii OhILAs] gi|158140471|gb|ABW18783.1| MiaB-like tRNA modifying enzyme [Alkaliphilus oremlandii OhILAs] Length = 433 Score = 242 bits (617), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 148/445 (33%), Positives = 251/445 (56%), Gaps = 30/445 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M ++F +GYE V+ + AD+ V+NTC + +K F+ R + Sbjct: 8 TLGCKVNQYETQAMGELFEKEGYEIVSDEEVADVYVINTCTVTNVGDKKSRQFIRRAK-- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV- 149 + + ++ V GC AQ +E+L VN+V+G ++ E +E +++ Sbjct: 66 -----RNNEEAIIAVVGCYAQTAPKEVLAIEG-VNIVIGTNERNKIVEAVENCSTEEKIS 119 Query: 150 -VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 VD V+ +FE +SIVD K AFL IQEGC+++CT+C++PY RG SR Sbjct: 120 LVDDIMKVK-QFEEMSIVD----VKDKTRAFLKIQEGCNQYCTYCIIPYARGPIRSRGPL 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRY 265 ++V+E L+ G E+ L G +V ++ DG +DL++ L ++ +GL R+R Sbjct: 175 EIVEEVETLVQKGFKEVVLTGIHVASYGKDRSDG-----TDLIHILKQVNGAQGLERIRL 229 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ P +D ++ LD + + HL +QSG + LK MNR++TA EY++I RIR V Sbjct: 230 SSLEPTLFTDDFLRELSQLDKICDHFHLSLQSGCNATLKRMNRKYTAEEYKEIAGRIRKV 289 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD-- 383 P++A+++D IVGFPGET+++F T + + IG+++ FKYSPR GTP S EQVD Sbjct: 290 YPEVALTTDVIVGFPGETEEEFNTTYEFIKDIGFSEIHVFKYSPRTGTPASKYKEQVDGL 349 Query: 384 -ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLN 441 ++ ++E+L+ L +K++ Q + VG+ +VL E KE K + G + V++ Sbjct: 350 TKHYRSEKLIDLGEKMKNQ---YRGQFVGKERKVLFEAISKENKAYMEGYTDNYLKVLVP 406 Query: 442 SKNHNIGDIIKVRITDVKISTLYGE 466 + G++ V + ++K + GE Sbjct: 407 ASEVVEGELTNVVLKELKEEYILGE 431 >gi|223044380|ref|ZP_03614414.1| conserved hypothetical protein [Staphylococcus capitis SK14] gi|222442249|gb|EEE48360.1| conserved hypothetical protein [Staphylococcus capitis SK14] Length = 448 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 142/430 (33%), Positives = 245/430 (56%), Gaps = 23/430 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F Y+RV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEADYDRVDFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ + +V V GC AQ EI+ P V+VVVG Q ++L + +++ + ++ + Sbjct: 65 ----IRQNPEAVVCVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLDYIDQFQEERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L + Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRTYEELEV---PYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++G EI L G + G G D + + LL L EI+GL R+R ++ Sbjct: 176 KVVEQASQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDEIEGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I+ G+ + ++ +LH+P+QSGSD +LK M R++T + + + + PD Sbjct: 233 EASQLTDEVIEVIGNSNKVVRHLHVPLQSGSDSVLKRMRRKYTMEHFSERLTELHKALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+++F+ T D + K +++ F YSPR+GTP + M +Q+DE+VK Sbjct: 293 LAVTSDVIVGFPGETEEEFQETYDFIVKHQFSELHVFPYSPRIGTPAARMDDQIDESVKN 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L+ L +L ++ + +++EV+ E+ G+E LVG + V Sbjct: 353 ERVHKLIALSDQLAKE---YTSKFENEVLEVIPEEKGEEPNTLVGYADNYMKVQFEGDES 409 Query: 446 NIGDIIKVRI 455 IG I+KV+I Sbjct: 410 LIGQIVKVKI 419 >gi|217033440|ref|ZP_03438870.1| hypothetical protein HP9810_1g54 [Helicobacter pylori 98-10] gi|216944145|gb|EEC23573.1| hypothetical protein HP9810_1g54 [Helicobacter pylori 98-10] Length = 430 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 144/428 (33%), Positives = 235/428 (54%), Gaps = 19/428 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC MN DS + Y+ + + ADLI++NTC +REK K++S +G+ +K Sbjct: 2 GCAMNSRDSEHLLSELSKLDYKETSDLKAADLILINTCSVREKPERKLFSEIGQFAKIKK 61 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 K G V GC A G +IL+++P V+ V+G + ++ +++ + + + +D Sbjct: 62 PNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKAVEVAIDY 115 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 D S FE + +K + + L I GCDK C +C+VP+TRG EIS + ++ Sbjct: 116 DESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILK 167 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271 EA KL NG E+ LLGQNVN + + + K FSDLL LSEI+G+ R+R+T+ HP Sbjct: 168 EAEKLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPL 227 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 M+D ++ + +H+P+QSGS +LK M R ++ + ++R++++ P++ I Sbjct: 228 HMNDAFLERFAKNPKVCKSIHMPLQSGSSVVLKMMRRGYSKEWFLNRVERLKALVPEVGI 287 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391 S+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V V + RL Sbjct: 288 STDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRL 347 Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLNSK-NHNI 447 LQ + +E VG+ VL+E + ++V GRS + + + K N Sbjct: 348 ERLQNRHKEILEEKAKLEVGKTHVVLVENRREINNQIVGFEGRSDTGKFIEVACKEKRNP 407 Query: 448 GDIIKVRI 455 G++++V I Sbjct: 408 GELVRVEI 415 >gi|195499798|ref|XP_002097099.1| GE24685 [Drosophila yakuba] gi|194183200|gb|EDW96811.1| GE24685 [Drosophila yakuba] Length = 583 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 148/470 (31%), Positives = 249/470 (52%), Gaps = 39/470 (8%) Query: 32 YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 YGCQMN D+ + + GY R ++AD+I+L TC +R+ A +++++ L +R +K Sbjct: 99 YGCQMNTNDTEVVFSILQENGYLRCQEPEEADVIMLVTCAVRDGAEQRIWNRLKHLRAMK 158 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150 + R L + + GC+A+ E++L + V+V+ GP +Y LP LL +R +G + Sbjct: 159 SKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISRHYGNSAI 218 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + S+++ + + V TAF++I GCD CT+C+VP+TRG E SR L + Sbjct: 219 NVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLESI 275 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEK--------------------CTFSD 249 V E + L + GV E+TLLGQNVN++R + GL+ ++ F+ Sbjct: 276 VAEVKALAEQGVKEVTLLGQNVNSYRDRSGLEAQESLKATPVPGFSTVYKPKTGGTPFAA 335 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL S+++ +R+R+T+ HP+D SD +++ D + LHLP QSG+ ++L+ M R Sbjct: 336 LLRSVAQAVPEMRIRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLERMRRG 395 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 ++ Y ++++ IR P++ +SSDFI GF GET+ +F+ T+ L+ ++ Y A+ F YS Sbjct: 396 YSREAYLELVEHIRQFLPNVGLSSDFICGFCGETEAEFQDTVSLIQQVKYNVAYLFAYSM 455 Query: 370 RLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGK 427 R T + V NVK +RL + + RE + GQ +L+E K + Sbjct: 456 REKTTAHRRYKDNVPLNVKNKRLQRMVQVFREGATQLHRKMEGQEQLILVEGKSKRSDAH 515 Query: 428 LVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVKISTLYG 465 GR+ V++ S ++ +GD + VRI + L G Sbjct: 516 WFGRNDANIKVIVPSIDVAISRDPTAKRSFGVGDFLAVRIEESNSQVLKG 565 >gi|326495462|dbj|BAJ85827.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 586 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 166/490 (33%), Positives = 249/490 (50%), Gaps = 49/490 (10%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYER-VNSMDDADLIVLNTCHIREKAAEKVYS-- 82 R + ++YGCQMNV D + + +GY V + A++I +NTC IR+ A +KV+ Sbjct: 80 RIYHETYGCQMNVNDMEIVLSIMKKEGYNDIVPDPESAEIIFINTCAIRDNAEQKVWQRL 139 Query: 83 ----FLGR--IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 FL R N+ R K + V GC+A+ E+IL +V+VV GP Y L Sbjct: 140 NYFWFLKRQWKTNVAGGRSKSLRPPKIAVLGCMAERLKEKILDSDKMVDVVCGPDAYRDL 199 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 P LL+ +G++ ++T S+E+ + ++ V N VTAF+++ GC+ C+FC+VP Sbjct: 200 PRLLQEVDYGQKGINTLLSLEETYADITPVRISDN---SVTAFVSVMRGCNNMCSFCIVP 256 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR----------GKGLD----- 241 +TRG E SR +S VV E +L GV E+ LLGQNVN++ GK Sbjct: 257 FTRGRERSRPVSSVVREVGELWYAGVKEVMLLGQNVNSYNDTSEVEELEPGKNWQLSEGF 316 Query: 242 GEKCT-------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 +C F+DLL LS +R R+T+ HP+D D L+ D + +HLP Sbjct: 317 SSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFPDELLYLMRDRHNICKLIHLP 376 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 QSGS +L+ M R +T Y +++ +IR+V PD+ +SSDFI GF ET+DD T+ LV Sbjct: 377 AQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSDFISGFCEETEDDHADTLSLV 436 Query: 355 DKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413 +GY A+ F YS R T N + V +VK RL L RE D+ +G Sbjct: 437 RAVGYDMAYMFAYSMREKTHAHRNYEDDVPNDVKQRRLAELINTFRETTRKIYDSQIGTT 496 Query: 414 IEVLIEKHGKE--KGKLVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVK 459 VL+E K + +L G++ V S + +GD ++V+I Sbjct: 497 QVVLVEGPNKRAPETELFGKTDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKILRSS 556 Query: 460 ISTLYGELVV 469 ++L GE + Sbjct: 557 TASLSGEPIA 566 >gi|195037130|ref|XP_001990018.1| GH19109 [Drosophila grimshawi] gi|193894214|gb|EDV93080.1| GH19109 [Drosophila grimshawi] Length = 647 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 153/479 (31%), Positives = 241/479 (50%), Gaps = 41/479 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + YGCQMN D+ + + GY+R + AD+++L TC +R+ A +K++ L Sbjct: 158 RRVHFEVYGCQMNTNDTEVVWSILHENGYQRCEDVASADVVMLVTCAVRDGAEQKIWHRL 217 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +R LK R L + + GC+A+ E +L + V+V+ GP +Y LP LL AR Sbjct: 218 RHLRALKERRGTRRHPLQLTLLGCMAERLKERLLEQEQCVDVIAGPDSYKDLPRLLAVAR 277 Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +G ++ S+++ + + V + TAF++I GCD CT+C+VP+TRG E Sbjct: 278 HYGNSAINVLLSLDETYADVMPVRLNSDSP---TAFVSIMRGCDNMCTYCIVPFTRGRER 334 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------- 246 SR L +V E R L GV E+TLLGQNVN++R + + + T Sbjct: 335 SRPLDSIVREVRTLQQQGVKEVTLLGQNVNSYRDRSGENNQATTDGNMASGFSTVYKPKT 394 Query: 247 ----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 F+ LL S++E +R+R+T+ HP+D SD +++ D + LHLP QSG+ + Sbjct: 395 GGLPFAVLLQSVAEAVPEMRIRFTSPHPKDFSDEVLRVIRDYPNVCKQLHLPAQSGNTAV 454 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L M R +T Y Q++ IR + P++ +SSDFI GF GET+ +F T+ L++ + Y A Sbjct: 455 LARMRRGYTRDAYLQLVTHIRQMLPEVGLSSDFICGFCGETEAEFEDTVTLIESVRYNVA 514 Query: 363 FSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-K 420 F F YS R T ++ V VK RL + + R + GQ +LIE K Sbjct: 515 FLFAYSMREKTTAHRRYVDDVPTAVKTARLQRMVQAFRAGATHLHKRFEGQQQLILIEGK 574 Query: 421 HGKEKGKLVGRSPWLQSVVLNS--------------KNHNIGDIIKVRITDVKISTLYG 465 + GR+ V++ + +N +GD + RI + L G Sbjct: 575 SKRSDSHWFGRNDANIKVIVPAASIPTTADAGESSRRNIGVGDFVVARIVESNSQVLKG 633 >gi|257459334|ref|ZP_05624447.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter gracilis RM3268] gi|257443263|gb|EEV18393.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter gracilis RM3268] Length = 431 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 151/445 (33%), Positives = 234/445 (52%), Gaps = 20/445 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F+++ GC MNV DS + Q YE + ++ ADLI++NTC +REK K++S +G Sbjct: 5 LFIQTLGCAMNVRDSEHIIAQLKEQDYEITDDVNIADLILINTCSVREKPVHKLFSEIGA 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + K G V GC A G EI +R+P V+ V+G + ++ + + +F Sbjct: 65 FDKARKKGSKIG------VCGCTASHLGGEIFKRAPFVDFVLGARNVSKISQAVRTPKFI 118 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++ D E +F Y +F+ I GCDK C++C+VP TRG EIS Sbjct: 119 STDINYD---ESEFAFGDFASSPYK------SFINIMIGCDKKCSYCIVPQTRGDEISIP 169 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLVRLR 264 ++ EA + G EI LLGQNVN + GK EK FSDLL LS+I+G+ R+R Sbjct: 170 AQIILREAERSAARGAKEIFLLGQNVNNY-GKRFSNAHEKIDFSDLLMRLSKIEGIERIR 228 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP M D + + + +H+P+QSGS ++L+ M R +T Y ++R Sbjct: 229 FTSPHPLHMDDKFLDVFCNNPKICKSMHMPLQSGSSKVLRDMKRGYTKQWYLDRALKLRQ 288 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P +AIS+D IVG+P E++DDF TM++++ + + Q FSFK+SPR TP ++ L+ +D+ Sbjct: 289 SCPGVAISTDIIVGYPSESEDDFAETMEVLEAVRFEQVFSFKFSPRPLTPAAS-LKPLDD 347 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + +ERL LQ + A +I +V E+ +E G GRS + Sbjct: 348 EISSERLSRLQNAHAKILDEIARAQKDKIFDVYFEEL-REGGTACGRSFSNFLICAQGGE 406 Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469 +G VRI LYG+++ Sbjct: 407 ELLGKTRGVRIEKTARMALYGKVIA 431 >gi|314933749|ref|ZP_07841114.1| Fe-S oxidoreductase [Staphylococcus caprae C87] gi|313653899|gb|EFS17656.1| Fe-S oxidoreductase [Staphylococcus caprae C87] Length = 448 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 244/430 (56%), Gaps = 23/430 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F Y+RV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEADYDRVDFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ +V V GC AQ EI+ P V+VVVG Q ++L + +++ + ++ + Sbjct: 65 ----IRQNPKAVVCVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLDYIDQFQEERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L + Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRTYEELEV---PYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++G EI L G + G G D + + LL L EI+GL R+R ++ Sbjct: 176 KVVEQASQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDEIEGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I+ G+ + ++ +LH+P+QSGSD +LK M R++T + + + + PD Sbjct: 233 EASQLTDEVIEVIGNSNKVVRHLHVPLQSGSDSVLKRMRRKYTMEHFSERLTELHKALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+++F+ T D + K +++ F YSPR+GTP + M +Q+DE+VK Sbjct: 293 LAVTSDVIVGFPGETEEEFQETYDFIVKHQFSELHVFPYSPRIGTPAARMDDQIDESVKN 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L+ L +L ++ S +++EV+ E+ G+E LVG + V Sbjct: 353 ERVHKLIALSDQLAKEYAS---KFENEVLEVIPEEKGEEPNTLVGYADNYMKVQFEGDES 409 Query: 446 NIGDIIKVRI 455 IG I+KV+I Sbjct: 410 LIGQIVKVKI 419 >gi|255083280|ref|XP_002504626.1| predicted protein [Micromonas sp. RCC299] gi|226519894|gb|ACO65884.1| predicted protein [Micromonas sp. RCC299] Length = 495 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 164/490 (33%), Positives = 247/490 (50%), Gaps = 54/490 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +V++YGCQMNV DS M + +GY+ M DAD+I++NTC IR+KA K++ L Sbjct: 2 KNVYVETYGCQMNVNDSEVMLSVLKDRGYDETGDMHDADVILVNTCAIRDKAEAKIWQRL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143 ++L+ + K +V V GC+A+ ++L + ++V GP Y LP L+E A Sbjct: 62 AYFKSLRRKKKKSE-KPVVGVLGCMAERLKTQLLEADQLADLVAGPDAYRDLPNLIEAVA 120 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-TAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ SVE+ + + V RK G AF+TI GCD C FC+VPYTRG E Sbjct: 121 GTGEKAMNVQLSVEETYADIIPV-----RKEGAHAAFVTIMRGCDNACAFCIVPYTRGRE 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--------------GKGLDGEKCT-- 246 SR + + E R L + GV E+TLLGQNVN++ G+G+ G Sbjct: 176 RSRDPASIEYEVRLLSEQGVKEVTLLGQNVNSYAYQEGETDFLSMLAAGEGVVGSDAAAR 235 Query: 247 -------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 F+ LL ++ I +R+R+T+ HP+D D +++ + LH+P QSGS Sbjct: 236 RREGAVQFAALLDRVAAIDPEMRVRFTSPHPKDFPDEVLEVIARRPNVCNCLHMPAQSGS 295 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 L+ M R +T Y +IDR++ + P AI++D I GF GET++D T+ L+ +GY Sbjct: 296 TATLERMARGYTREAYLTLIDRVKEIIPGCAITTDIISGFCGETEEDHADTVSLMKAVGY 355 Query: 360 AQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 QAF F YS R GT + E V E+VK RL + R VG+ VL+ Sbjct: 356 EQAFMFAYSERDGTSAARHQEDDVPEDVKQRRLAEVIDAFRTTAAERQKEEVGRTHLVLV 415 Query: 419 EKHGKEKGK-LVGRSPWLQSVVLNSKNHNI---------------------GDIIKVRIT 456 E K+ + L G++ + V I G+ + VR+T Sbjct: 416 EGPSKKNERELTGKTDSAKWAVFADTPVGIYGGDEDEERTGGEKGVATPRAGEYVAVRVT 475 Query: 457 DVKISTLYGE 466 TL+GE Sbjct: 476 GCSTGTLFGE 485 >gi|217031489|ref|ZP_03436994.1| hypothetical protein HPB128_21g47 [Helicobacter pylori B128] gi|216946689|gb|EEC25285.1| hypothetical protein HPB128_21g47 [Helicobacter pylori B128] Length = 430 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 145/428 (33%), Positives = 235/428 (54%), Gaps = 19/428 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC MN DS + Y+ + ADLI++NTC +REK K++S +G+ +K Sbjct: 2 GCAMNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIGQFAKIKK 61 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 K G V GC A G +IL+++P V+ V+G + ++ +++ R + + +D Sbjct: 62 PNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHREKAVEVAIDY 115 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 D S FE + +K + + L I GCDK C +C+VP+TRG EIS + ++ Sbjct: 116 DESAY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILR 167 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271 EA KL +NG E+ LLGQNVN + + + K FSDLL LSEI+G+ R+R+T+ HP Sbjct: 168 EAEKLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPL 227 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 M+D ++ + +H+P+QSGS +LK M R ++ + ++R++++ P++ I Sbjct: 228 HMNDRFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVGI 287 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391 S+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V V + RL Sbjct: 288 STDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRL 347 Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLNSK-NHNI 447 LQ + +E VG+ VL+E + ++V GRS + + + K N Sbjct: 348 ERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDDQIVGFEGRSDTGKFIEVACKEKRNP 407 Query: 448 GDIIKVRI 455 G++++V I Sbjct: 408 GELVRVEI 415 >gi|303288614|ref|XP_003063595.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454663|gb|EEH51968.1| predicted protein [Micromonas pusilla CCMP1545] Length = 548 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 154/453 (33%), Positives = 243/453 (53%), Gaps = 26/453 (5%) Query: 8 IGVAHMVSQIVDQCIVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLI 65 +GVA V++ + +R + ++YGCQMNV DS M + GY+ + + DAD+I Sbjct: 71 VGVAGAVAEAPETPSPRERKNVYTETYGCQMNVNDSEVMLSVLADNGYDTTDDVHDADVI 130 Query: 66 VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125 ++NTC IR+KA K++ L ++L+ R K+ +V V GC+A+ ++L + + Sbjct: 131 LINTCAIRDKAEAKIWQRLAYFKSLRRRR-KKNEKPVVGVLGCMAERLKTQLLEADQLAD 189 Query: 126 VVVGPQTYYRLPELLERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-TAFLTIQ 183 +V GP Y LP L+ G++ ++ SVE+ + + V RK G AF+TI Sbjct: 190 LVAGPDAYRDLPNLISAVNSSGEKAMNVQLSVEETYADIVPV-----RKEGAHAAFVTIM 244 Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGK 238 GCD C+FC+VPYTRG E SR + + E R L + GV E+TLLGQNVN++ G Sbjct: 245 RGCDNACSFCIVPYTRGRERSRDPASIEYEVRLLSEQGVKEVTLLGQNVNSYAYVAEEGA 304 Query: 239 GLDG-----EKCT----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289 G DG K T F+ LL ++ + +R+R+T+ HP+D D +++ + + Sbjct: 305 GADGATDFLSKLTGSMQFAALLDRVASVDPEMRVRFTSPHPKDFPDEVLEVIKNRPNVCK 364 Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349 LH+P QSGS L+ M R +T Y +I + P AI++D I GF ET+++ Sbjct: 365 CLHMPAQSGSTTTLERMARGYTREAYLDLIKNVHEKIPGCAITTDIITGFCAETEEEHED 424 Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408 T+ L+ + Y QAF F YS R GT + M + VD++VK RL + R N+ Sbjct: 425 TVSLMKLVKYEQAFMFAYSEREGTAAARKMSDDVDDDVKQRRLAEIIDAFRSSASERNER 484 Query: 409 CVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 +G++ L+E K+ + L G++ + VV Sbjct: 485 EIGRVHLCLVEGVSKKNDRELTGKTDTSKWVVF 517 >gi|256370749|ref|YP_003108574.1| RNA modification protein, MiaB family [Candidatus Sulcia muelleri SMDSEM] gi|256009541|gb|ACU52901.1| RNA modification protein, MiaB family [Candidatus Sulcia muelleri SMDSEM] Length = 458 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 148/462 (32%), Positives = 259/462 (56%), Gaps = 27/462 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++++++YGCQMN+ DS + + ++G+ + + + +A++I++NTC IREK+ K+ + Sbjct: 4 KKYYIENYGCQMNISDSEIVCSILDNEGFIQTDLIQNANIILINTCSIREKSENKILLRI 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143 +I+ LKN + +L++ + GC+A+ ++ + + IVN+++GP +Y LP L+++ Sbjct: 64 NQIKYLKNYK----KNLIIGILGCMAEIFKKKFFKINKIVNLILGPDSYRELPFLIKKIL 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + ++T +S + + + +K +TAF+TI GCD CTFCVVP+TRG E Sbjct: 120 NQNGKYINTYFSNNETYSDIL----PKRKKEKITAFVTIMRGCDNMCTFCVVPFTRGREK 175 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCTFS----------D 249 SR ++ E L G EI LLGQNV++ W G GL + K +FS Sbjct: 176 SRDPISILKECEFLFQKGFKEIILLGQNVDSYFWYGGGLKKNFNKFSFSLKNNTIINFPK 235 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL +++ +R+R+ TS+P ++ ++ + ++HLPVQSGS++IL MNR+ Sbjct: 236 LLELVAKTVPFMRIRFWTSNPNQITFNVLNVMKKYKNICKHIHLPVQSGSNKILSLMNRK 295 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 ++ EY +I++I + P+ +IS D I GF E++ D T++L++ + Y ++ F YSP Sbjct: 296 YSREEYILLINQIYKIIPNCSISCDIITGFCNESEKDHNETLNLMNYVKYNFSYMFIYSP 355 Query: 370 R-LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGK 427 R L + V +K RL + R+ +G+I E+LIE K + Sbjct: 356 RKLTYAFKKFNDNVSLTIKKRRLTEIINLQRKHSYYRLKKSIGKIQEILIEGISKKSRNY 415 Query: 428 LVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467 GR+ V+ N KN IG++IKV+I + +TL GE+ Sbjct: 416 FYGRNSGNDIVIFNKNKKNSKIGNLIKVKIKNCTSATLIGEI 457 >gi|194902322|ref|XP_001980672.1| GG17285 [Drosophila erecta] gi|190652375|gb|EDV49630.1| GG17285 [Drosophila erecta] Length = 586 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 150/473 (31%), Positives = 247/473 (52%), Gaps = 42/473 (8%) Query: 32 YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 YGCQMN D+ + + GY R ++AD+I+L TC +R+ A +++++ L +R +K Sbjct: 99 YGCQMNTNDTEVVFSILKESGYLRCQEPEEADVIMLVTCAVRDGAEQRIWNRLKHLRAMK 158 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVV 150 N R L + + GC+A+ E++L + V+V+ GP +Y LP LL +R +G + Sbjct: 159 NKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISRHYGNSAI 218 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + S+++ + + V TAF++I GCD CT+C+VP+TRG E SR L + Sbjct: 219 NVLLSLDETYADVMPVRLN---SESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLHSI 275 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGK-------GLDGEKCT----------------- 246 V EA+ L + GV E+TLLGQNVN++R + L E+ T Sbjct: 276 VAEAKALAEQGVKEVTLLGQNVNSYRDRSAQEQQEALCPEEATPVPGFSTVYKPKTGGTP 335 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F+ LL ++++ +R+R+T+ HP+D SD +++ D + LHLP QSG+ ++L M Sbjct: 336 FAALLRAVAQAVPEMRVRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLDRM 395 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R ++ Y +++ IR P++ +SSDFI GF GET+++F+ T+ L+ ++ Y A+ F Sbjct: 396 RRGYSREAYLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAYLFA 455 Query: 367 YSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424 YS R T + V NVK ERL + + RE + GQ +L+E K + Sbjct: 456 YSMREKTTAHRRYKDDVPLNVKNERLQRMVQVFREGATQLHRQMEGQEQLILVEGKSKRS 515 Query: 425 KGKLVGRSPWLQSVVLNS------------KNHNIGDIIKVRITDVKISTLYG 465 GR+ V++ + ++ GD + VRI + L G Sbjct: 516 DAHWFGRNDANIKVIVPAIDVPICGDPTARRSFGAGDFLTVRIEESNSQVLKG 568 >gi|70726341|ref|YP_253255.1| hypothetical protein SH1340 [Staphylococcus haemolyticus JCSC1435] gi|68447065|dbj|BAE04649.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 448 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 149/444 (33%), Positives = 247/444 (55%), Gaps = 25/444 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F Y+RVN +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKDANYDRVNFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D +V V GC AQ EI+ P V+VVVG Q ++L + +++ R ++ + Sbjct: 65 ----IRQNPDAVVCVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLDYIQQFREERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRTYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L++ G EI L G + G G D + + LL L EI GL R+R ++ Sbjct: 176 KVVEQATQLVNAGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLEEIDGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I + ++ +LH+P+QSGSD +LK M R++T + + I ++ PD Sbjct: 233 EASQLTDEVIDVLKRSNKVVRHLHVPLQSGSDTVLKRMRRKYTMEHFSERIMKLHDALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+++F+ T D + K +++ F YS R+GTP + M +Q+DE +K Sbjct: 293 LAVTSDVIVGFPGETEEEFQETYDFIVKHKFSELHVFPYSARIGTPAARMDDQIDETIKN 352 Query: 389 ER---LLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 ER L+ L +L ++ S F D +++EV+ E+ G+ +G LVG + V + Sbjct: 353 ERVHKLITLSDQLAKEYASKFED----EVLEVIPEEAGEIEGTLVGYADNYMKVQFEGND 408 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG I+KV+I G++V Sbjct: 409 SLIGQIVKVKIAKADYPINKGKVV 432 >gi|168215652|ref|ZP_02641277.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens NCTC 8239] gi|182382416|gb|EDT79895.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens NCTC 8239] Length = 434 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 160/445 (35%), Positives = 251/445 (56%), Gaps = 23/445 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S M + F +GYE V+ + AD+ V+NTC + +K +GR R Sbjct: 7 TLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIGRAR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERAR-FGK 147 ++ + ++ V GC AQ E+ S I V+VV+G + + + +AR GK Sbjct: 65 -----RQNPEAIIAVVGCYAQIAPTEV---SGIEGVDVVLGSRNKGEIVYYVNKARDEGK 116 Query: 148 RVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + V +++K FE L I + YN K AFL IQ+GC++FC +C++PYTRG S+ Sbjct: 117 QQVKVGAVLKNKVFEDLKIEE--YNNK--TRAFLKIQDGCNRFCAYCLIPYTRGSVCSKD 172 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +V+DE R L ++G EI L G + ++ G LD EK T DLL + +I G+ R+R Sbjct: 173 PKKVLDEIRSLAEHGFKEIILSGIHTASY-GVDLD-EKVTLVDLLEEIEKIDGIERVRIG 230 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P ++ +++ L L P+ HL +QSG D LK MNRR+TA EY I++ +R Sbjct: 231 SIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLRDKI 290 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 D++I++D IVGFPGETD++F+ T + + +I ++ FKYSPR GT NM QVD N Sbjct: 291 EDVSITTDVIVGFPGETDEEFKETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVDGNK 350 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK-NH 445 K ER L + R + +F + +G++I+VL E+ E G V + +N+K + Sbjct: 351 KDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEE-VELGSGVYTGYTRNYIKVNAKADC 409 Query: 446 NI-GDIIKVRITDVKISTLYGELVV 469 N+ G I+ V+I + GE+V+ Sbjct: 410 NVSGKILNVKINSFEGEVAKGEIVL 434 >gi|226311621|ref|YP_002771515.1| hypothetical protein BBR47_20340 [Brevibacillus brevis NBRC 100599] gi|226094569|dbj|BAH43011.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 452 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 148/433 (34%), Positives = 242/433 (55%), Gaps = 21/433 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 + GC++N Y++ + +F + GYERV+ +DAD+ V+NTC + +K + R Sbjct: 8 TLGCKVNSYETEAIWQLFKADGYERVDFEQEDADVYVINTCTVTNTGDKKSRQVIRRA-- 65 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 I+ + +V V GC AQ EI + P V++VVG Q +L E +++ R + Sbjct: 66 -----IRRNPEAIVAVTGCYAQTSPSEIAQ-IPGVDIVVGTQGREKLIEYVDQIRAERTP 119 Query: 150 VDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 ++ ++ FE L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 INAVGNIMKARDFEELD-VPNFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRKP 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 VV++A+KL++ G EI L G + G G D E + LL L +++GL R+R ++ Sbjct: 176 ESVVEQAQKLVEAGYLEIVLTGIHTG---GYGEDLEDYNLAKLLIDLHQVEGLKRIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ + D ++ +LH+P+Q+G D +LK M R++T E+ + + ++R P Sbjct: 233 IEASQITDEVIEVINNSDRVVRHLHVPLQAGDDEVLKRMRRKYTTAEFYERMVKVREALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 AI++D IVGFPGET++ F + + KIG+A+ F YS R GTP + M +Q+ E K Sbjct: 293 GAAITTDVIVGFPGETEEQFWNGYEFMKKIGFAEMHVFPYSMRTGTPAARMTDQIPEEEK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE---KGKLVGRSPWLQSVVLNSKN 444 ER+ L + +E ++++ VG ++EV+ E+ KE G L+G S +VV Sbjct: 353 NERVAKLLELNQELTLAYSKKFVGDVLEVIPERPFKEAPDSGLLMGYSDNYLNVVFPGDE 412 Query: 445 HNIGDIIKVRITD 457 IG I KVR+ + Sbjct: 413 SMIGKICKVRLDE 425 >gi|225175074|ref|ZP_03729070.1| RNA modification enzyme, MiaB family [Dethiobacter alkaliphilus AHT 1] gi|225169250|gb|EEG78048.1| RNA modification enzyme, MiaB family [Dethiobacter alkaliphilus AHT 1] Length = 431 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 144/425 (33%), Positives = 237/425 (55%), Gaps = 15/425 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ ++++F GYE V + AD+ V+NTC + + K + R R Sbjct: 8 TLGCKVNQTETAALQNLFGEAGYETVPFEETADVYVINTCTVTHLSDRKSRQMIRRAR-- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + D ++VV GC AQ ++I+ P V++V+G + +RLPEL++ A+ G+ Sbjct: 66 -----RTNPDAVIVVTGCYAQVSADDIME-IPEVDLVIGTHSRHRLPELVQEAKKGRLNC 119 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + + FE + G R R AFL +QEGC +FC++C+VPY RG SR Sbjct: 120 VAPWEEKQGFEAMPASQSG-ERTR---AFLKVQEGCRQFCSYCIVPYARGPLHSRPPEDA 175 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 EA +L + G E+ L G ++ ++ G+ L GE SDL+ L I+ + R+R ++ P Sbjct: 176 AAEAERLAEQGFSEMVLSGVHLGSY-GEDLPGE-LALSDLIRELVTIEKIRRIRISSIEP 233 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 +++ LI+ D + +LH+P+QSG D +L+ MNR++ + E+ Q+I +R+ P++A Sbjct: 234 TEITPDLIEVLLDYPKVCRHLHIPLQSGDDHVLRRMNRKYDSAEFLQLIRWLRAQIPEMA 293 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I++D +VGFPGETD F T+++V K G+++ FKYSPR GTP + EQ+ VK ER Sbjct: 294 ITTDVMVGFPGETDSQFERTLEVVRKCGFSRIHVFKYSPRSGTPAAKFDEQISPQVKEER 353 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450 L E +F +G+ +EVL E+ E G++ G + V + +G I Sbjct: 354 SRRLIDLGEELAGTFRRRFIGETVEVLFEESAGE-GQITGLTEHYVRVTAEAPQAMLGQI 412 Query: 451 IKVRI 455 +KV I Sbjct: 413 VKVDI 417 >gi|147669834|ref|YP_001214652.1| RNA modification protein [Dehalococcoides sp. BAV1] gi|229890510|sp|A5FPV2|MIAB_DEHSB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|146270782|gb|ABQ17774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dehalococcoides sp. BAV1] Length = 418 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 154/445 (34%), Positives = 241/445 (54%), Gaps = 38/445 (8%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ + GCQMN +S R+ +F GY + +DA+L+++N+C +RE A KV + L Sbjct: 4 YYLWTIGCQMNQAESDRLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVVNRLHL 63 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R+LKN E L + + GC+ + I ++ P V+ + GP + +P+ E Sbjct: 64 LRSLKN----ENPKLKIALTGCLVGQDISLIKKKFPFVDYIFGPGS---MPDWRE----- 111 Query: 147 KRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + G+ + V+A +TI +GC+ FCT+CVVPY RG E S Sbjct: 112 -------------------IPEGFILPLRPPVSANVTIMQGCNNFCTYCVVPYRRGREKS 152 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS++++ E +L+ G E+ LLGQNV+++ G L + C +DLL +L +I GL+R+R Sbjct: 153 RSIAEIGCEVAELVRRGSREVVLLGQNVDSY-GHDLPEKPC-LADLLSALHDITGLLRIR 210 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D+S LI A L + L LPVQSG D IL SM R +T +YR++++RI++ Sbjct: 211 FLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQSGDDTILASMRRGYTNQQYRELVERIKT 270 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVD 383 PDI++ +D IVGFP E ++ F + L+ IGY YSPR T +M + V Sbjct: 271 AMPDISLQTDLIVGFPSENEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAAHDMADDVP 330 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 K RL ++ +E N A + EVL+E G +K K GR+ + V L S Sbjct: 331 VIEKKRRLKLIEDLQKETVGKANAALMDTFAEVLVE--GLQKNKWQGRTLGGKLVFLESD 388 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 G ++KV+I +L +LV Sbjct: 389 LPLEGCLVKVKIFKTSPWSLQAKLV 413 >gi|110803412|ref|YP_699306.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens SM101] gi|110683913|gb|ABG87283.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens SM101] Length = 434 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 160/445 (35%), Positives = 251/445 (56%), Gaps = 23/445 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S M + F +GYE V+ + AD+ V+NTC + +K +GR R Sbjct: 7 TLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIGRAR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERAR-FGK 147 ++ + ++ V GC AQ E+ S I V+VV+G + + + +AR GK Sbjct: 65 -----RQNPEAIIAVVGCYAQIAPTEV---SGIEGVDVVLGSRNKGEIVYYVNKARDEGK 116 Query: 148 RVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + V +++K FE L I + YN K AFL IQ+GC++FC +C++PYTRG S+ Sbjct: 117 QQVKVGAVLKNKVFEDLKIEE--YNNK--TRAFLKIQDGCNRFCAYCLIPYTRGSVCSKD 172 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +V+DE R L ++G EI L G + ++ G LD EK T DLL + +I G+ R+R Sbjct: 173 PKKVLDEIRSLAEHGFKEIILSGIHTASY-GVDLD-EKVTLVDLLEEIEKIDGIERVRIG 230 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P ++ +++ L L P+ HL +QSG D LK MNRR+TA EY I++ +R Sbjct: 231 SIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLRDKI 290 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 D++I++D IVGFPGETD++F+ T + + +I ++ FKYSPR GT NM QVD N Sbjct: 291 EDVSITTDVIVGFPGETDEEFKETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVDGNK 350 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK-NH 445 K ER L + R + +F + +G++I+VL E+ E G V + +N+K + Sbjct: 351 KDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEE-VELGSGVYTGYTRNYIKVNAKADC 409 Query: 446 NI-GDIIKVRITDVKISTLYGELVV 469 N+ G I+ V+I + GE+V+ Sbjct: 410 NVSGKILNVKINSFEGEVAEGEIVL 434 >gi|224537220|ref|ZP_03677759.1| hypothetical protein BACCELL_02097 [Bacteroides cellulosilyticus DSM 14838] gi|224521143|gb|EEF90248.1| hypothetical protein BACCELL_02097 [Bacteroides cellulosilyticus DSM 14838] Length = 337 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 134/343 (39%), Positives = 204/343 (59%), Gaps = 15/343 (4%) Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFC 190 Y LP+L+ G++ ++ + S + + + S + G + ++ F++I GC+ FC Sbjct: 2 YLTLPDLVAAVEAGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFC 56 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 T+C+VPYTRG E SR + +++E L+ G E+TLLGQNVN++R + +GE TF L Sbjct: 57 TYCIVPYTRGRERSRDVESILNEVSDLVAKGYKEVTLLGQNVNSYRFEKPNGEVVTFPML 116 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L +++E VR+R+TTSHP+DMSD ++ + + ++HLPVQSGS RILK MNR++ Sbjct: 117 LRTVAEAAPGVRVRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKY 176 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 T Y +D I + PD +S+D GF ET++D + ++ L++K Y AF FKYS R Sbjct: 177 TREWYLDRVDAIHRIVPDCGLSTDIFSGFHSETEEDHQLSLSLMEKCAYDSAFMFKYSER 236 Query: 371 LGTPGSNML-EQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EK 425 GT S L + V E VK RL + LQ +L + N C+G+ EVL+E K + Sbjct: 237 PGTYASKHLPDDVPEEVKIRRLNEIIALQNRLSAES---NARCIGKTYEVLVEGVSKRSR 293 Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +LVGR+ + VV + H IGD + V+IT+ +TL GE V Sbjct: 294 EQLVGRTEQNRVVVFDRGTHRIGDFVMVKITEASSATLKGEEV 336 >gi|251810993|ref|ZP_04825466.1| 2-methylthioadenine synthase [Staphylococcus epidermidis BCM-HMP0060] gi|293366463|ref|ZP_06613140.1| Fe-S oxidoreductase [Staphylococcus epidermidis M23864:W2(grey)] gi|251805503|gb|EES58160.1| 2-methylthioadenine synthase [Staphylococcus epidermidis BCM-HMP0060] gi|291319232|gb|EFE59601.1| Fe-S oxidoreductase [Staphylococcus epidermidis M23864:W2(grey)] Length = 451 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 142/431 (32%), Positives = 243/431 (56%), Gaps = 25/431 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV +AD+ V+NTC + +K + R Sbjct: 11 TLGCKVNHYETEAIWQLFKDANYERVEFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D +V V GC AQ EI+ P V++VVG Q ++L + +++ + ++ + Sbjct: 68 ----IRQNPDAVVCVTGCYAQTSSAEIME-IPGVDIVVGTQDRHKLLDYIQQFQDERQPI 122 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L + Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 123 NGVGNIMKNRTYEELEV---PYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 178 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++G EI L G + G G D + + LL L I+GL R+R ++ Sbjct: 179 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDTIEGLERIRISSI 235 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I G+ + ++ +LH+P+QSGSD +LK M R++T + + + ++ PD Sbjct: 236 EASQLTDEVIDVIGNSNKVVRHLHIPLQSGSDDVLKRMRRKYTMAHFSERLTKLHQALPD 295 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE---N 385 +A++SD IVGFPGE++D+F+ T D + +++ F YSPR+GTP + M Q+DE N Sbjct: 296 LAVTSDVIVGFPGESEDEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDNQIDEETKN 355 Query: 386 VKAERLLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 V+ +L+ L +L ++ S F D +++EV+ E+ G+E LVG + V + Sbjct: 356 VRVHKLISLSNQLAKEYASKFED----EVLEVIPEEMGEEPHTLVGYADNYMKVRFEGDD 411 Query: 445 HNIGDIIKVRI 455 IG I+KV+I Sbjct: 412 SLIGQIVKVKI 422 >gi|168204736|ref|ZP_02630741.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens E str. JGS1987] gi|170663578|gb|EDT16261.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens E str. JGS1987] Length = 434 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 160/442 (36%), Positives = 249/442 (56%), Gaps = 26/442 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S M + F +GYE V+ + AD+ V+NTC + +K +GR R Sbjct: 7 TLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIGRAR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERAR-FGK 147 ++ + ++ V GC AQ E+ S I V+VV+G + + + +AR GK Sbjct: 65 -----RQNPEAIIAVVGCYAQIAPTEV---SGIEGVDVVLGSRNKGEIVYYVNKARDEGK 116 Query: 148 RVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + V +++K FE L I + YN K AFL IQ+GC++FC +C++PYTRG S+ Sbjct: 117 QQVKVGAVLKNKVFEDLKIEE--YNNK--TRAFLKIQDGCNRFCAYCLIPYTRGSVCSKD 172 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +V++E R L D+G EI L G + ++ G LD EK T DLL + +I G+ R+R Sbjct: 173 PKKVLEEIRSLADHGFKEIILSGIHTASY-GVDLD-EKVTLVDLLEEIEKIDGIERVRIG 230 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P ++ +++ L L P+ HL +QSG D LK MNRR+TA EY I++ +R Sbjct: 231 SIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLRDKI 290 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 D++I++D IVGFPGETD++F T + + +I ++ FKYSPR GT NM QVD N Sbjct: 291 EDVSITTDVIVGFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVDGNK 350 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK-NH 445 K ER L + R + +F + +G++I+VL E+ E G V + +N+K + Sbjct: 351 KDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEE-VELGSGVYTGYTRNYIKVNAKADC 409 Query: 446 NIGDIIKVRITDVKISTLYGEL 467 N+ +I DVKI++ GE+ Sbjct: 410 NVSG----KILDVKINSFEGEV 427 >gi|317010550|gb|ADU84297.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter pylori SouthAfrica7] Length = 438 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 144/435 (33%), Positives = 237/435 (54%), Gaps = 19/435 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GC MN DS + Y N ADLI++NTC +REK K++S +G Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYRETNDPKIADLILINTCSVREKPERKLFSEIG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K K G V GC A G +IL+++P V+ V+G + ++ +++ + + Sbjct: 62 QFAKIKKPNAKIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKA 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D D S FE + +K V + L I GCDK C +C+VP+TRG EIS Sbjct: 116 VEVAIDYDESAY-AFE-------FFEKKAEVRSLLNISIGCDKKCAYCIVPHTRGKEISI 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLR 264 + ++ EA KL NG E+ LLGQNVN + + G K FSDLL LSEI G+ R+R Sbjct: 168 PMDLILKEAEKLAHNGTKELMLLGQNVNNYGVRFSSGHAKVNFSDLLDKLSEIPGIERIR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +T+ HP M+D ++ + +H+P+QSGS +LK M R ++ + ++++++ Sbjct: 228 FTSPHPLHMNDEFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVEKLKA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P++ IS+D IVGFP E+D DF TM++++ + + +SF YSPR T E+V Sbjct: 288 LVPEVGISTDIIVGFPNESDKDFEDTMEVLETVRFDTLYSFIYSPRPFTEAGAWKERVPL 347 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLN 441 V + RL LQ + +E +G+ VL+E + ++V GRS + + + Sbjct: 348 EVSSLRLERLQNRHKEILEEKAKLEMGKTHVVLVENTREMDNQIVGFEGRSDTGKFIEVT 407 Query: 442 SK-NHNIGDIIKVRI 455 K N+G++++V I Sbjct: 408 CKEKRNLGELVEVEI 422 >gi|73749069|ref|YP_308308.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dehalococcoides sp. CBDB1] gi|123619987|sp|Q3ZYS0|MIAB_DEHSC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|73660785|emb|CAI83392.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dehalococcoides sp. CBDB1] Length = 418 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 154/445 (34%), Positives = 242/445 (54%), Gaps = 38/445 (8%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ + GCQMN +S R+ +F GY + +DA+L+++N+C +RE A KV + L Sbjct: 4 YYLWTIGCQMNQAESDRLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVVNRLHL 63 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R+LKN K L + + GC+ + I ++ P V+ + GP + +P+ E Sbjct: 64 LRSLKNKNPK----LKIALTGCLVGQDISLIKKKFPFVDYIFGPGS---MPDWRE----- 111 Query: 147 KRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + G+ + V+A +TI +GC+ FCT+CVVPY RG E S Sbjct: 112 -------------------IPEGFILPLRPPVSANVTIMQGCNNFCTYCVVPYRRGREKS 152 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS++++ E +L+ G E+ LLGQNV+++ G L + C +DLL +L +I GL+R+R Sbjct: 153 RSIAEIGCEVAELVRRGSREVVLLGQNVDSY-GHDLPEKPC-LADLLSALHDITGLLRIR 210 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D+S LI A L + L LPVQSG D IL SM R +T +YR++++RI++ Sbjct: 211 FLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQSGDDTILASMRRGYTNQQYRELVERIKT 270 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383 PDI++ +D IVGFP E ++ F + L+ IGY YSPR T + +M + V Sbjct: 271 AMPDISLQTDLIVGFPSENEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVP 330 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 K RL ++ +E N A + EVL+E G +K K GR+ + V L S Sbjct: 331 VIEKKRRLKLIEDLQKETVGKANAALMDTFAEVLVE--GLQKNKWQGRTLGGKLVFLESD 388 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 G ++KV+I +L +LV Sbjct: 389 LPLEGCLVKVKIFKTSPWSLQAKLV 413 >gi|310643065|ref|YP_003947823.1| tRNA-i(6)a37 thiotransferase enzyme miab [Paenibacillus polymyxa SC2] gi|309248015|gb|ADO57582.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Paenibacillus polymyxa SC2] Length = 447 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 141/444 (31%), Positives = 247/444 (55%), Gaps = 21/444 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 + GC++N YD+ + +F +GYE+V+ AD+ ++NTC + +K Sbjct: 8 TLGCKVNFYDTEAIWQLFKKEGYEQVDFDEQTADVYLINTCTVTNTGDKKSRQ------- 60 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + I+ D +V V GC AQ EI+ P V++V+G Q ++ ++ + ++ Sbjct: 61 IIRRAIRRNPDAIVAVTGCYAQTSPAEIMD-IPGVDLVIGTQDRDKIIPFVKEIQESRQP 119 Query: 150 VDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 V+ ++ FE + + D ++ + AFL IQ+GC+ FCTFC++P++RG+ SR Sbjct: 120 VNAVRNIMKTRVFEEMDVPDFAHHTR----AFLKIQDGCNNFCTFCIIPWSRGLSRSRDA 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + ++ +AR+L+ G EI L G + G G D + SDLL+ L +++GL R+R ++ Sbjct: 176 ASIITQARQLVHAGYKEIVLTGIHTG---GYGDDMDNYDLSDLLWDLEKVEGLERIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 + + ++ + L+ + H+P+Q+G D +LK M R++T E+ + IR P Sbjct: 233 IEASQIDEKMLDVLKRSNKLVRHFHIPLQAGDDTVLKRMRRKYTTEEFYNKMLMIRKAMP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D+AI++D IVGFPGETD+ FR +L+ KIG+++ F YS R GTP + M +QVDE+VK Sbjct: 293 DVAITTDIIVGFPGETDEMFRNGYELMKKIGFSEMHVFPYSKRTGTPAARMEDQVDEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 R+ L + + Q+++ + VGQ++EV+ E K ++ G L G S +V Sbjct: 353 NARVRELIELSEQMQLAYAEKFVGQVLEVIPEVAPKGTEDSGILYGYSDNYIQLVFEGNK 412 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 +G + +V++T ++ G+LV Sbjct: 413 DLVGKVCRVKLTKAGVNESEGQLV 436 >gi|145521116|ref|XP_001446413.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124413891|emb|CAK79016.1| unnamed protein product [Paramecium tetraurelia] Length = 504 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 151/468 (32%), Positives = 251/468 (53%), Gaps = 48/468 (10%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +FF+++YGCQMN DS ++ + S+GY N + +AD+I LNTC IR A +KV+ + Sbjct: 46 KFFIETYGCQMNANDSQIVQSILSSEGYSNTNDISEADIIFLNTCSIRANAEKKVFQRM- 104 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 S +K +L ++ GC+A+ E++ + N++VGP +Y LP LL + Sbjct: 105 -------SELKSQNKVLGIL-GCMAERLKEQLFVQG--ANIIVGPDSYKSLPTLLNSFQL 154 Query: 146 GK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + +DT+ S+ + ++ + + N +T +++I GC+ C+FCVVP+TRG E S Sbjct: 155 TRDKQIDTNLSLTETYDDILPI----NPTDSITTYVSIMRGCNNMCSFCVVPFTRGRERS 210 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTFSDLLYSLSEIKG 259 R+ +++E + L G+ E+TLLGQNVN++ + F++L Y L G Sbjct: 211 RNPESILEEIQILTQKGIKEVTLLGQNVNSYFFQDEKISSQHENTVGFTEL-YKLRSGNG 269 Query: 260 L---------------VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 L R+R+T+ HP++ +++ + +H+P+QSGSD ILK Sbjct: 270 LRFDQLLDEIAVKFPKTRIRFTSPHPKNFPKKVLEVIAKHPNICKNIHIPIQSGSDEILK 329 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 M R +T + + R++ P++ +S+D IVGF ET+ DF T+ L+ + + AF Sbjct: 330 KMRRNYTRGAIVDLCNEARTLIPNVTLSTDVIVGFCDETEYDFEQTLSLLQLVQFENAFM 389 Query: 365 FKYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSF----NDACVGQIIEVLIE 419 F YS R T N+ + V E+VK+ RL +KL EQQ N +G+ VL+E Sbjct: 390 FAYSMREKTHAYRNLQDNVPESVKSSRL----EKLIEQQHKIMNYKNSLEIGKKHIVLVE 445 Query: 420 KHGKEKGKLVGRSPWLQSVVLNSKN--HNIGDIIKVRITDVKISTLYG 465 + G + +L GR+ + VV + N + IGD ++V I + TL G Sbjct: 446 QLGNKPNQLKGRTDSNKGVVFQNDNNIYAIGDFVEVEILGSGLKTLSG 493 >gi|27468181|ref|NP_764818.1| hypothetical protein SE1263 [Staphylococcus epidermidis ATCC 12228] gi|57867026|ref|YP_188720.1| hypothetical protein SERP1144 [Staphylococcus epidermidis RP62A] gi|282875998|ref|ZP_06284865.1| MiaB-like protein [Staphylococcus epidermidis SK135] gi|27315727|gb|AAO04862.1|AE016748_96 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637684|gb|AAW54472.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A] gi|281295023|gb|EFA87550.1| MiaB-like protein [Staphylococcus epidermidis SK135] gi|329735363|gb|EGG71655.1| tRNA methylthiotransferase YqeV [Staphylococcus epidermidis VCU045] gi|329737126|gb|EGG73380.1| tRNA methylthiotransferase YqeV [Staphylococcus epidermidis VCU028] Length = 448 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 142/431 (32%), Positives = 243/431 (56%), Gaps = 25/431 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKDANYERVEFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D +V V GC AQ EI+ P V++VVG Q ++L + +++ + ++ + Sbjct: 65 ----IRQNPDAVVCVTGCYAQTSSAEIME-IPGVDIVVGTQDRHKLLDYIQQFQDERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L + Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRTYEELEV---PYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++G EI L G + G G D + + LL L I+GL R+R ++ Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDTIEGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I G+ + ++ +LH+P+QSGSD +LK M R++T + + + ++ PD Sbjct: 233 EASQLTDEVIDVIGNSNKVVRHLHIPLQSGSDDVLKRMRRKYTMAHFSERLTKLHQALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE---N 385 +A++SD IVGFPGE++D+F+ T D + +++ F YSPR+GTP + M Q+DE N Sbjct: 293 LAVTSDVIVGFPGESEDEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDNQIDEETKN 352 Query: 386 VKAERLLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 V+ +L+ L +L ++ S F D +++EV+ E+ G+E LVG + V + Sbjct: 353 VRVHKLISLSNQLAKEYASKFED----EVLEVIPEEMGEEPHTLVGYADNYMKVRFEGDD 408 Query: 445 HNIGDIIKVRI 455 IG I+KV+I Sbjct: 409 SLIGQIVKVKI 419 >gi|242373881|ref|ZP_04819455.1| 2-methylthioadenine synthase [Staphylococcus epidermidis M23864:W1] gi|242348435|gb|EES40037.1| 2-methylthioadenine synthase [Staphylococcus epidermidis M23864:W1] Length = 451 Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 141/430 (32%), Positives = 243/430 (56%), Gaps = 23/430 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F Y+RV+ +AD+ V+NTC + +K + R Sbjct: 11 TLGCKVNHYETEAIWQLFKEADYDRVDFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ + +V V GC AQ EI+ P V+VVVG Q ++L + +++ + ++ + Sbjct: 68 ----IRQNPEAVVCVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLDYIDQFQQERQPI 122 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L + Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 123 NGVGNIMKNRTYEELEV---PYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 178 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++G EI L G + G G D + + LL L EI GL R+R ++ Sbjct: 179 KVVEQASQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDEIDGLERIRISSI 235 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I+ G+ + ++ +LH+P+QSGSD +LK M R++T + + + + PD Sbjct: 236 EASQLTDEVIEVIGNSNKVVRHLHVPLQSGSDSVLKRMRRKYTMEHFSERLTELHKALPD 295 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+++F+ T D + K +++ F YSPR+GTP + M +Q+DE +K Sbjct: 296 LAVTSDVIVGFPGETEEEFQETYDFIVKHQFSELHVFPYSPRIGTPAARMDDQIDEGIKN 355 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L+ L +L ++ S +++EV+ E+ G++ LVG + V Sbjct: 356 ERVHKLITLSNQLAKEYAS---KFENEVLEVIPEEQGEKPNTLVGYADNYMKVQFEGDES 412 Query: 446 NIGDIIKVRI 455 IG I+KV+I Sbjct: 413 LIGQIVKVKI 422 >gi|18311007|ref|NP_562941.1| MiaB-like tRNA modifying protein [Clostridium perfringens str. 13] gi|168208727|ref|ZP_02634352.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens B str. ATCC 3626] gi|168212938|ref|ZP_02638563.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens CPE str. F4969] gi|18145689|dbj|BAB81731.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|170713061|gb|EDT25243.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens B str. ATCC 3626] gi|170715635|gb|EDT27817.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens CPE str. F4969] Length = 434 Score = 239 bits (609), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 160/445 (35%), Positives = 250/445 (56%), Gaps = 23/445 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S M + F +GYE V+ + AD+ V+NTC + +K +GR R Sbjct: 7 TLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIGRAR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERAR-FGK 147 ++ + ++ V GC AQ E+ S I V+VV+G + + + +AR GK Sbjct: 65 -----RQNPEAIIAVVGCYAQIAPTEV---SGIEGVDVVLGSRNKGEIVYYVNKARDEGK 116 Query: 148 RVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + V +++K FE L I + YN K AFL IQ+GC++FC +C++PYTRG S+ Sbjct: 117 QQVKVGAVLKNKVFEDLKIEE--YNNK--TRAFLKIQDGCNRFCAYCLIPYTRGSVCSKD 172 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +V+DE R L ++G EI L G + ++ G LD EK T DLL + +I G+ R+R Sbjct: 173 PKKVLDEIRSLAEHGFKEIILSGIHTASY-GVDLD-EKVTLVDLLEEIEKIDGIERVRIG 230 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P ++ +++ L L P+ HL +QSG D LK MNRR+TA EY I++ +R Sbjct: 231 SIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLRDKI 290 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 D++I++D IVGFPGETD++F T + + +I ++ FKYSPR GT NM QVD N Sbjct: 291 EDVSITTDVIVGFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVDGNK 350 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK-NH 445 K ER L + R + +F + +G++I+VL E+ E G V + +N+K + Sbjct: 351 KDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEE-VELGSGVYTGYTRNYIKVNAKADC 409 Query: 446 NI-GDIIKVRITDVKISTLYGELVV 469 N+ G I+ V+I + GE+V+ Sbjct: 410 NVSGKILNVKINSFEGEVAEGEIVL 434 >gi|159897576|ref|YP_001543823.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Herpetosiphon aurantiacus ATCC 23779] gi|229890607|sp|A9AZY8|MIAB_HERA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|159890615|gb|ABX03695.1| RNA modification enzyme, MiaB family [Herpetosiphon aurantiacus ATCC 23779] Length = 438 Score = 239 bits (609), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 153/450 (34%), Positives = 244/450 (54%), Gaps = 29/450 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 R+FV + GCQMNV DS R+E GY +DAD IVLN+C +R A EK+ + Sbjct: 4 NRYFVWTVGCQMNVSDSERLESALQGVGYTPAEQAEDADFIVLNSCSVRANAEEKI---I 60 Query: 85 GRIRNLKNSRIK-EGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLER 142 G+I +++ RIK E D +V+ GC+ + I ++ P+V+ V P + E+L Sbjct: 61 GKITDIQ--RIKRERPDTKIVLWGCMVGPNNQSIFKKKLPMVDHFVSPSA---VDEVLAL 115 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A + Y +++ L + D + V + I GC+ C +CV+P RG E Sbjct: 116 A------PNPIYQLDEPA--LPVADW---QVPPVNVHVPINYGCNMSCAYCVIPLRRGKE 164 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + ++ +E R++ G EITLLGQ V+++ G L G + +DLL L E GLVR Sbjct: 165 RSRPMEEIAEEVRRICARGAKEITLLGQIVDSY-GHDLPG-RPDLADLLEYLHETPGLVR 222 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR+ TSHP MS+ L+ L +MP ++LP+Q+G D++LK M R +T +Y ++I+RI Sbjct: 223 LRFLTSHPAFMSEKLLHTIARLPKVMPDINLPIQAGDDQLLKVMKRGYTVAKYTKLIERI 282 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---- 378 R + P++++S+D IVG PGET + F T+++V+ I + + YS R GT ++M Sbjct: 283 REIIPNVSLSTDIIVGHPGETREMFERTLEMVENIRFDKVHIAAYSSRPGTKAADMELDP 342 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 V+ K R + L++ N+ C+G +EVL+E+ KGK GR + V Sbjct: 343 ALAVEHGEKQYRRIALERLQERIATERNEECLGHEVEVLVEEF--TKGKWRGRDRNNKLV 400 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + G ++ + +T+ + L G L+ Sbjct: 401 FFEADGDWYGKVVNIHVTETRPWWLGGNLI 430 >gi|156538649|ref|XP_001607691.1| PREDICTED: similar to radical sam proteins [Nasonia vitripennis] Length = 660 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 147/435 (33%), Positives = 234/435 (53%), Gaps = 34/435 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++ YGCQMNV D+ + + Y+ + DA++I+L TC IRE A KV++ L Sbjct: 163 QKVYLEVYGCQMNVNDTEVVSAILKKHNYKITKDIMDANVILLVTCAIRENAENKVWNKL 222 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + R LK ++ LL GC+A+ +I+ + IV+++ GP +Y LP LL + Sbjct: 223 KQFRILKERKVVSKIGLL----GCMAERLKHKIIEKEKIVDIIAGPDSYKDLPRLLAISN 278 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + ++ S+++ + ++ V + K A+++I GCD CT+C+VP+TRG E S Sbjct: 279 EHETAINVALSLDETYADVTPVRLNPDSK---AAYVSIMRGCDNMCTYCIVPFTRGRERS 335 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-------------------KGLDGEKC 245 R +S ++DE ++L D G+ E+TLLGQNVN++R KG + Sbjct: 336 RPISSILDEVQQLSDQGIKEVTLLGQNVNSYRDISESKYYTSADTPQKTNLVKGFNTVYK 395 Query: 246 T------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 T FS LL +S I +R+R+T+ HP+D D +I + + +HLP QSGS Sbjct: 396 TKLGGLRFSHLLDKVSLINPEMRIRFTSPHPKDFPDEVIHLIAERPNICKQIHLPAQSGS 455 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L M R ++ Y ++ IR++ PDIAISSDFI GF ET+ +F T+ L++++ Y Sbjct: 456 TDVLTRMRRGYSREAYLDLVYHIRNIIPDIAISSDFIAGFCNETEKEFEETLTLIEEVKY 515 Query: 360 AQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 AF F YS R T + VD+ +K +RL + K R + +G+ VL+ Sbjct: 516 TTAFLFAYSMREKTTAYRRYSDNVDKKIKIQRLQKMIKLYRTEVERLYKNSIGKQQLVLV 575 Query: 419 EKHGKEKGK-LVGRS 432 E K K L GR+ Sbjct: 576 EGESKRSVKDLQGRN 590 >gi|169343507|ref|ZP_02864506.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens C str. JGS1495] gi|169298067|gb|EDS80157.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens C str. JGS1495] Length = 434 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 160/445 (35%), Positives = 250/445 (56%), Gaps = 23/445 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S M + F +GYE V+ + AD+ V+NTC + +K +GR R Sbjct: 7 TLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIGRAR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERAR-FGK 147 ++ + ++ V GC AQ E+ S I V+VV+G + + + +AR GK Sbjct: 65 -----RQNPEAIIAVVGCYAQIAPTEV---SGIEGVDVVLGSRNKGEIVYYVNKARDEGK 116 Query: 148 RVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + V +++K FE L I + YN K AFL IQ+GC++FC +C++PYTRG S+ Sbjct: 117 QQVKVGAVLKNKVFEDLKIEE--YNNK--TRAFLKIQDGCNRFCAYCLIPYTRGSVCSKD 172 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +V++E R L D+G EI L G + ++ G LD EK T DLL + +I G+ R+R Sbjct: 173 PKKVLEEIRSLADHGFKEIILSGIHTASY-GVDLD-EKVTLVDLLEEIEKIDGIERVRIG 230 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P ++ +++ L L P+ HL +QSG D LK MNRR+TA EY I++ +R Sbjct: 231 SIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLRDKI 290 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 D++I++D IVGFPGETD++F T + + +I ++ FKYSPR GT NM QVD N Sbjct: 291 EDVSITTDVIVGFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVDGNK 350 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK-NH 445 K ER L + R + +F + +G++I+VL E+ E G V + +N+K + Sbjct: 351 KDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEE-VELGSGVYTGYTRNYIKVNAKADC 409 Query: 446 NI-GDIIKVRITDVKISTLYGELVV 469 N+ G I+ V+I + GE+V+ Sbjct: 410 NVSGKILNVKINSFEGEVAKGEIVL 434 >gi|110801313|ref|YP_696705.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens ATCC 13124] gi|110675960|gb|ABG84947.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens ATCC 13124] Length = 434 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 160/445 (35%), Positives = 250/445 (56%), Gaps = 23/445 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S M + F +GYE V+ + AD+ V+NTC + +K +GR R Sbjct: 7 TLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIGRAR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERAR-FGK 147 ++ + ++ V GC AQ E+ S I V+VV+G + + + +AR GK Sbjct: 65 -----RQNPEAIIAVVGCYAQIAPTEV---SGIEGVDVVLGSRNKGEIVYYVNKARDEGK 116 Query: 148 RVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + V +++K FE L I + YN K AFL IQ+GC++FC +C++PYTRG S+ Sbjct: 117 QQVKVGAVLKNKVFEDLKIEE--YNNK--TRAFLKIQDGCNRFCAYCLIPYTRGSVCSKD 172 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +V+DE R L ++G EI L G + ++ G LD EK T DLL + +I G+ R+R Sbjct: 173 PKKVLDEIRSLAEHGFKEIILSGIHTASY-GVDLD-EKVTLVDLLEEIEKIDGIERVRIG 230 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P ++ +++ L L P+ HL +QSG D LK MNRR+TA EY I++ +R Sbjct: 231 SIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLRDKI 290 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 D++I++D IVGFPGETD++F T + + +I ++ FKYSPR GT NM QVD N Sbjct: 291 EDVSITTDVIVGFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVDGNK 350 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK-NH 445 K ER L + R + +F + +G++I+VL E+ E G V + +N+K + Sbjct: 351 KDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEE-VELGSGVYTGYTRNYIKVNAKADC 409 Query: 446 NI-GDIIKVRITDVKISTLYGELVV 469 N+ G I+ V+I + GE+V+ Sbjct: 410 NVSGKILNVKINSFEGEVAKGEIVL 434 >gi|182626906|ref|ZP_02954640.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens D str. JGS1721] gi|177907756|gb|EDT70368.1| MiaB-like tRNA modifying enzyme [Clostridium perfringens D str. JGS1721] Length = 434 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 160/445 (35%), Positives = 250/445 (56%), Gaps = 23/445 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S M + F +GYE V+ + AD+ V+NTC + +K +GR R Sbjct: 7 TLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIGRAR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERAR-FGK 147 ++ + ++ V GC AQ E+ S I V+VV+G + + + +AR GK Sbjct: 65 -----RQNPEAIIAVVGCYAQIAPTEV---SGIEGVDVVLGSRNKGEIVYYVNKARDEGK 116 Query: 148 RVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + V +++K FE L I + YN K AFL IQ+GC++FC +C++PYTRG S+ Sbjct: 117 QQVKVGAVLKNKVFEDLKIEE--YNNK--TRAFLKIQDGCNRFCAYCLIPYTRGSVCSKD 172 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +V+DE R L ++G EI L G + ++ G LD EK T DLL + +I G+ R+R Sbjct: 173 PKKVLDEIRSLAEHGFKEIILSGIHTASY-GVDLD-EKVTLVDLLEEIEKIDGIERVRIG 230 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P ++ +++ L L P+ HL +QSG D LK MNRR+TA EY I++ +R Sbjct: 231 SIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDSTLKRMNRRYTAKEYEDIVNLLRDKI 290 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 D++I++D IVGFPGETD++F T + + +I ++ FKYSPR GT NM QVD N Sbjct: 291 EDVSITTDVIVGFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVDGNK 350 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK-NH 445 K ER L + R + +F + +G++I+VL E+ E G V + +N+K + Sbjct: 351 KDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEE-VELGSGVYTGYTRNYIKVNAKADC 409 Query: 446 NI-GDIIKVRITDVKISTLYGELVV 469 N+ G I+ V+I + GE+V+ Sbjct: 410 NVSGKILNVKINSFEGEVAKGEIVL 434 >gi|268571887|ref|XP_002641175.1| Hypothetical protein CBG09036 [Caenorhabditis briggsae] Length = 997 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 156/466 (33%), Positives = 245/466 (52%), Gaps = 41/466 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV D + + G+ + AD+++L TC IR+ A +KV++ L IR+ Sbjct: 540 TYGCQMNVSDMEIVRSIMTQYGFVESEKKEKADVVLLMTCSIRDGAEKKVWNHLKLIRS- 598 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 NS K +V V GC+A+ ++L + +VN+V GP +Y LP L+ A G + Sbjct: 599 -NSVNKSQ---IVGVLGCMAERVRHDLLAKRNLVNIVAGPDSYRDLPRLVAIAAGGSNAI 654 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + S+++ + + + K TAF++I GCD CT+CVVP+TRG E SR + + Sbjct: 655 NVQLSLDETYADVQPIRVDAATK---TAFISIMRGCDNMCTYCVVPFTRGRERSRPIESI 711 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-------------------TFSDLL 251 V+E R+L D+G +ITLLGQNVN++R + TF+ LL Sbjct: 712 VEEVRRLRDDGYKQITLLGQNVNSYRDLTISPSTSSEDRVPGFKTVYKPKTGGLTFTSLL 771 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +++ VR R+T+ HP+D LI+ L LHLP QSG D L+ M R +T Sbjct: 772 EQVADAAPEVRFRFTSPHPKDFPMQLIELIASRPNLCKQLHLPAQSGDDDTLERMGRGYT 831 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 Y +++D IR + P++ ++SDFI GF GET+ + T+ L+ ++GY+ F F YS R Sbjct: 832 RDLYLRLVDDIRKILPNVFLTSDFIAGFCGETEQAHQMTLSLIRQVGYSFCFVFPYSMRG 891 Query: 372 GTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----- 425 T + L + V E VKA+R L L RE+ + N +G E ++ + G + Sbjct: 892 KTRAHHRLADDVPEEVKAQRHLDLTTVFREEALKLNQTLIG--TEQIVLREGTSRRDATF 949 Query: 426 --GKLVGRSPWLQSVVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468 G++ G +++V N ++ G KV IT+ TL +L+ Sbjct: 950 SYGRIDG---GVKTVFPNPEDIVKPGQYAKVLITEANSQTLRAQLI 992 >gi|330686099|gb|EGG97720.1| tRNA methylthiotransferase YqeV [Staphylococcus epidermidis VCU121] Length = 448 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/444 (33%), Positives = 244/444 (54%), Gaps = 25/444 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEADYERVDFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D +V V GC AQ EI+ P V+VVVG Q ++L + ++ + ++ + Sbjct: 65 ----IRKNPDAVVCVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLDYIDEFQKERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ K+E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A L++ G EI L G + G G D + + LL L ++ GL R+R ++ Sbjct: 176 KVVEQATTLVNAGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDQVDGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I + ++ +LH+P+QSGSD +LK M R++T + + I ++ PD Sbjct: 233 EASQLTDEVIDVLERSNKIVRHLHVPLQSGSDTVLKRMRRKYTMEHFSERITKLHEALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +AI+SD IVGFPGET+++F+ T D + K +++ F YS R+GTP + M +Q+DE +K Sbjct: 293 VAITSDVIVGFPGETEEEFQETYDFIVKHKFSELHVFPYSSRIGTPAARMDDQIDEEIKN 352 Query: 389 ER---LLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 ER L+ L +L ++ S F D +++EV+ E+ G++ LVG + V Sbjct: 353 ERVHKLIALSDQLAKEYASKFED----EVLEVIPEEKGEKPNTLVGYADNYMKVEFEGSE 408 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG IIKV+I YG+ + Sbjct: 409 DLIGQIIKVKIQKADYPLNYGKAI 432 >gi|17553146|ref|NP_498290.1| hypothetical protein F25B5.5 [Caenorhabditis elegans] gi|2501544|sp|Q09316|CK5P1_CAEEL RecName: Full=CDK5RAP1-like protein gi|726392|gb|AAC46526.1| Hypothetical protein F25B5.5 [Caenorhabditis elegans] Length = 547 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 158/466 (33%), Positives = 245/466 (52%), Gaps = 36/466 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV D + + G+ + ++AD+++L TC IR+ A +KV++ L IR+ Sbjct: 85 TYGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRDGAEKKVWNQLKLIRS- 143 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + + +G +V V GC+A+ ++L + +VN+V GP +Y LP L+ A G + Sbjct: 144 --NSVNKGQ--IVGVLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAGGSNGI 199 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + S+++ + + + K TAF++I GCD CT+CVVP+TRG E SR + + Sbjct: 200 NVQLSLDETYADVQPIRVDSASK---TAFISIMRGCDNMCTYCVVPFTRGRERSRPIESI 256 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKG---------------LDGEKC---------T 246 V+E ++L D G ++TLLGQNVN++R + G K T Sbjct: 257 VEEVQRLRDQGYKQVTLLGQNVNSYRDMTSMDFSMAPSTSQEDRVPGFKTVYKPKSGGLT 316 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F+ LL +++ +R R+T+ HP+D LI+ L LHLP QSG D L+ M Sbjct: 317 FTTLLEKVADAAPDIRFRFTSPHPKDFPMQLIELIASRPNLCKQLHLPAQSGDDETLERM 376 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R +T Y +++D IR V P ++++SDFI GF GET+ + T+ L+ + Y+ F F Sbjct: 377 ERGYTRDLYLRLVDDIRHVLPSVSLTSDFIAGFCGETEQAHQNTLSLIRAVRYSFCFVFP 436 Query: 367 YSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 YS R T + L + V E+VKA R L L RE+ + N A +G VL+E K Sbjct: 437 YSMRGKTRAHHRLTDDVPEDVKARRHLDLTTVFREEALKLNQALIGSEQTVLLEGKSKRD 496 Query: 426 GKLV-GR-SPWLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468 GR +++V NSK G K+ ITD TL +L+ Sbjct: 497 ASFSHGRIDGGVKAVFDNSKLCLEPGQYAKILITDANSQTLKAQLI 542 >gi|302804139|ref|XP_002983822.1| hypothetical protein SELMODRAFT_180500 [Selaginella moellendorffii] gi|300148659|gb|EFJ15318.1| hypothetical protein SELMODRAFT_180500 [Selaginella moellendorffii] Length = 469 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 151/432 (34%), Positives = 233/432 (53%), Gaps = 28/432 (6%) Query: 60 DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGD-----LLVVVAGCVAQAEG 114 +++D+I++NTC IR+ A K++ L +++K++ K G V V GC+A+ Sbjct: 26 EESDVILINTCAIRDNAENKIWQRLNYFKHIKSNWRKNGTKSSRPPPKVAVLGCMAERLK 85 Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR 174 E+++ +V+VV GP Y LP LL G++ ++T S+E+ + +S V K Sbjct: 86 EKLIEADKMVDVVCGPDAYRDLPRLLSSVEQGQQAINTLLSLEETYADVSPVRIA---KD 142 Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234 VTAF++I GC+ C FC+VP+TRG E SR L +V E +L + GV E+TLLGQNVN+ Sbjct: 143 SVTAFVSIMRGCNNMCAFCIVPFTRGRERSRPLESIVREVGELWEQGVKEVTLLGQNVNS 202 Query: 235 WRG-KGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287 + G T F+ LL L+E +R R+T+ HP+D D L+ + + Sbjct: 203 YCDLSGFSAIYRTNESGLRFASLLKCLAETYPEMRFRFTSPHPKDFPDDLLLVMREHHNV 262 Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347 +HLPVQSGS R+L+ M R +T Y ++++RIR + P +A+SSDFI GF GET++D Sbjct: 263 CNSIHLPVQSGSSRVLERMRRGYTREAYLELVERIREIIPGVALSSDFIAGFCGETEEDH 322 Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN 406 T+ +V+ +GY A+ F YS R TP ++ V E VK RL L + + Sbjct: 323 LQTLSIVETVGYEMAYMFAYSMREKTPAHRHDVDDVPEEVKQRRLSELIATFKRSSAARY 382 Query: 407 DACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS---KNHNIGDI--------IKVR 454 + +G+ VLIE K + GR Q V + +H GD+ + V+ Sbjct: 383 HSQLGKTQLVLIEAPNKRNPNEWGGRCDSGQKVFFSRAPVPDHQSGDLVDTKPGDYVAVK 442 Query: 455 ITDVKISTLYGE 466 I D ++L GE Sbjct: 443 ILDTTFASLRGE 454 >gi|289433046|ref|YP_003462919.1| RNA modification enzyme, MiaB family [Dehalococcoides sp. GT] gi|288946766|gb|ADC74463.1| RNA modification enzyme, MiaB family [Dehalococcoides sp. GT] Length = 418 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 153/445 (34%), Positives = 242/445 (54%), Gaps = 38/445 (8%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ + GCQMN +S R+ +F GY + +DA+L+++N+C +RE A KV + L Sbjct: 4 YYLWTIGCQMNQAESDRLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVVNRLHL 63 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R+LKN K L + + GC+ + I ++ P V+ + GP + +P+ E Sbjct: 64 LRSLKNKNPK----LKIALTGCLVGQDISLIKKKFPFVDYIFGPGS---MPDWRE----- 111 Query: 147 KRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + G+ + V+A +TI +GC+ FCT+CVVPY RG E S Sbjct: 112 -------------------IPEGFILPLRPPVSANVTIMQGCNNFCTYCVVPYRRGREKS 152 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS++++ E +L+ G E+ LLGQNV+++ G L + C +DLL +L +I GL+R+R Sbjct: 153 RSIAEIGCEVAELVRRGSREVVLLGQNVDSY-GHELPEKPC-LADLLSALHDIPGLLRIR 210 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + TSHP+D+S LI A L + L LPVQSG D IL +M R +T +YR++++RI++ Sbjct: 211 FLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQSGDDTILAAMRRGYTNQQYRELVERIKT 270 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVD 383 PDI++ +D IVGFP E ++ F + L+ IGY YSPR T + +M + V Sbjct: 271 AMPDISLQTDLIVGFPSENEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVP 330 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 K RL ++ +E N A + EVL+E G +K K GR+ + V L S Sbjct: 331 VIEKKRRLKLIEDLQKETVGKANAALMDTFAEVLVE--GLQKNKWQGRTLGGKLVFLESD 388 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 G ++KV+I +L +LV Sbjct: 389 LPLEGCLVKVKIFKTSPWSLQAKLV 413 >gi|225620134|ref|YP_002721391.1| 2-methylthioadenine synthetase [Brachyspira hyodysenteriae WA1] gi|225214953|gb|ACN83687.1| MiaB, 2-methylthioadenine synthetase [Brachyspira hyodysenteriae WA1] Length = 411 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 146/428 (34%), Positives = 234/428 (54%), Gaps = 30/428 (7%) Query: 51 QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA 110 +G+ + + ++AD I++NTC +R A E+V+S R++ +R K D +++ GC+A Sbjct: 3 EGFIQTENHENADNIIINTCSVRAHAEERVFS---RVKLFNANRKKNKKDTKIIIMGCMA 59 Query: 111 QAEGE--EILRRSPIVNVV--VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV 166 Q E E L I +V V Y + E+ R + + Y EDK + Sbjct: 60 QTSKEHLENLGVDKIFDVYNEVNIIDYLKDEEVFVRKFNDNYIFNKSYVDEDKPHK---- 115 Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226 AF+ I GC+ +CT+C+VP+TRG +SR ++++E ++LID+G EIT Sbjct: 116 -----------AFIPISHGCNNWCTYCIVPHTRGKMVSRKSDEIIEELKRLIDDGAKEIT 164 Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-----KGLVRLRYTTSHPRDMSDCLIKAH 281 LLGQNVN++ G +D E F++LLY L +I K V +R+ TSHP+D L A Sbjct: 165 LLGQNVNSY-GLDIDNE-INFTELLYKLDKIIYEKAKDKVWIRFLTSHPKDFDKDLADAI 222 Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341 +L+ L ++HLP QSGSDRIL MNR++T EY + + +R+ D IS+D IVG+ Sbjct: 223 WNLNSLCKHIHLPFQSGSDRILNLMNRKYTKDEYVKKVSYLRNYADDFPISTDIIVGYAD 282 Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401 ET+D+++ T++L++ IG+ +A+ +KYS R G+ Q D+ A RL L RE Sbjct: 283 ETEDEYQETLNLLESIGFEEAYLYKYSEREGSIAYKKNVQYDKAAGARRLTNLVNYQREL 342 Query: 402 QVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS-KNHNIGDIIKVRITDVKI 460 VG+ V+++ K+ + RS + +++ K N+GDI +T++K Sbjct: 343 AQKLLSKQVGKKTSVMVDDIAKDNMHYLCRSKENRIILVKKDKELNMGDIFNAEVTEIKS 402 Query: 461 STLYGELV 468 TL G + Sbjct: 403 HTLIGNFI 410 >gi|296133939|ref|YP_003641186.1| RNA modification enzyme, MiaB family [Thermincola sp. JR] gi|296032517|gb|ADG83285.1| RNA modification enzyme, MiaB family [Thermincola potens JR] Length = 445 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 150/443 (33%), Positives = 236/443 (53%), Gaps = 23/443 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F QGY+ V D AD+ V+NTC + K + R + Sbjct: 8 TLGCKVNQYETEALASLFRRQGYQVVEFSDKADVYVINTCTVTHLGDRKSRQMIRRAK-- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + D +V V GC AQ E+ V++V+G ++ E +E + V Sbjct: 66 -----RNNPDAIVAVMGCYAQTSPGEVTAIEG-VDLVIGTSDRSKVVECVEDFKRQDTPV 119 Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + D +FE L ++D Y + AFL IQEGC+ FCT+C++PY RG SR Sbjct: 120 NLVKDIMQAREFEELPVLD--YESR--TRAFLKIQEGCNNFCTYCIIPYARGPVRSRKRD 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 V+ EA +L+ G EI L G ++ A+ R G D + L+ L+ IKGL RLR Sbjct: 176 NVITEAERLVGEGFREIVLTGIHIGAYGRDRDDGYD-----LAALVADLARIKGLRRLRL 230 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 + P D++ LI D V+ +LHLP+QSG D +L+ MNR++ +E+ ++++ IR++ Sbjct: 231 GSVEPEDVTPHLIATMADNRVICRHLHLPLQSGDDAVLEKMNRKYNTHEFTRLVNSIRAM 290 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 DIAI++D IVGFPGETD+ F T + V +G+++ FKYSPR GTP +N QV Sbjct: 291 VDDIAITTDIIVGFPGETDEQFDNTYNYVKALGFSRLHVFKYSPRKGTPAANFPGQVPAE 350 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVVLNSKN 444 K ER L + +E F +G+ +EVL+E+ + + G + +V N Sbjct: 351 TKEERSSRLIELGKEMGREFARRFLGREMEVLVEQRLEADLHYMEGLTDNYLAVAFPGGN 410 Query: 445 HNIGDIIKVRITDVKISTLYGEL 467 G+ + V++T VK ++GE+ Sbjct: 411 ELKGEFVTVKLTSVKEEHVFGEV 433 >gi|290996977|ref|XP_002681058.1| predicted protein [Naegleria gruberi] gi|284094681|gb|EFC48314.1| predicted protein [Naegleria gruberi] Length = 471 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 160/456 (35%), Positives = 251/456 (55%), Gaps = 54/456 (11%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 F+++YGCQMNV D+ + + GY+ V+S +A +I+LNTC +RE A K++ L + Sbjct: 13 FIETYGCQMNVSDTQIILSILDKNGYKLVDSDKEASVILLNTCAVRENAENKIWIRLNEL 72 Query: 88 R-------NLKNSRIKEG--GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 + +L N +E + + V GC+A+ +++ + +V+VVVGP Y LP Sbjct: 73 KKKRHENKHLHNFNPEEYPVSGVQIGVLGCMAERLKTKLIE-TNMVDVVVGPDQYRDLPN 131 Query: 139 LL---ERARFGKRVVDTDYSVEDKFERLSIV---DGGYNR-------KRGVTAFLTIQEG 185 LL E + +R +D + VE + +L+++ D Y G +AF++I G Sbjct: 132 LLKKNEESEMLQRSLDDN--VEGRQAQLNVMLSMDETYADIEPVRVGDTGKSAFVSIMRG 189 Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--------- 236 CD C++C+VP+TRG E SR ++ +++E R+L NG+ E+TLLGQNVN++R Sbjct: 190 CDNMCSYCIVPFTRGRERSRDITSILNEIRQLSKNGIKEVTLLGQNVNSYRDTSDSIYQE 249 Query: 237 -----GKGL---DGEKC---------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279 GK + DG K TF++LLY +S+I +R+RYT+ HP+D D LI+ Sbjct: 250 KYKNEGKEIETTDGFKTIYKPKIGGLTFTELLYEVSQIDKEMRIRYTSPHPKDYPDSLIE 309 Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339 + + +HLP QSGS +L M R +TA Y ++DRI++ P++A+SSDFI GF Sbjct: 310 LIRETPNICNQIHLPAQSGSTNMLDRMRRGYTAESYIALVDRIKNRIPNVALSSDFIAGF 369 Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKL 398 ET+ D + T+ L++ + Y QA+ F YS R T N + V +VK RL L + Sbjct: 370 CSETEQDHQDTLKLLNHVKYDQAYLFAYSLREKTHAHRNYEDDVPADVKNRRLNELVQTY 429 Query: 399 REQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRS 432 RE + VG + VLI+ K + VGR+ Sbjct: 430 RENLAIQYEKEVGTLQCVLIDSDSKRDPQNYWVGRT 465 >gi|118792628|ref|XP_320425.3| AGAP012104-PA [Anopheles gambiae str. PEST] gi|116116988|gb|EAA00300.4| AGAP012104-PA [Anopheles gambiae str. PEST] Length = 538 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 152/482 (31%), Positives = 251/482 (52%), Gaps = 43/482 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++ YGCQMN D+ + + + Y R ++ +AD++++ TC IRE A + V++ L Sbjct: 46 RKVFLEVYGCQMNTNDTEIVWSILKAHQYHRTVNLKEADIVLMMTCAIREGAEDTVWNRL 105 Query: 85 GRIRNLKNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +R LK R G L + V GC+A+ ++++ + V+VV GP Y LP LL Sbjct: 106 KHLRLLKRKRETNGEKPLQIGVLGCMAERLKKQLVEKEHSVDVVAGPDAYKDLPRLLAIG 165 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + G++ ++ S+++ + +V +RK TAF++I GCD C++C+VP+TRG E Sbjct: 166 QRGQKAINVLLSLDETY--ADVVPVKLDRK-SKTAFVSIMRGCDNMCSYCIVPFTRGKER 222 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG----LDGEK--------------- 244 SR + + +E +L + G+ EITLLGQNVN++R D K Sbjct: 223 SRPIKSIREEVLQLENEGIREITLLGQNVNSYRDTSDESLEDAPKEATLLAPGFRTVYKS 282 Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300 F++LL L+E +R+R+T+ HP+D +++ + LHLP QSG+ Sbjct: 283 KVGGLRFAELLTELAEAVPEMRIRFTSPHPKDFPVDVLETIAKYPNICNSLHLPAQSGNT 342 Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 ++L+ M R +T Y +++ +R + P++ +SSDFI GF GE++ +F T+ L++++GY Sbjct: 343 QVLERMRRGYTREAYLNLVEEVRRIIPNVTLSSDFICGFCGESEPEFADTVSLIEQVGYH 402 Query: 361 QAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 AF F YS R T + V E VK ERL + R + N V + VLIE Sbjct: 403 AAFLFAYSMREKTTAHRRYSDDVPEEVKQERLRRMIAAFRREAERLNSLFVDRTELVLIE 462 Query: 420 KHGK-EKGKLVGRSPWLQSVVLNS--------------KNHNIGDIIKVRITDVKISTLY 464 + K + L GR+ V++ + + +GD + VRIT L Sbjct: 463 GYSKRSRTDLAGRNDGNVKVIVPAGQVRSDRAADRDDVRPLGVGDYVAVRITGSNSQILK 522 Query: 465 GE 466 GE Sbjct: 523 GE 524 >gi|109947120|ref|YP_664348.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter acinonychis str. Sheeba] gi|109714341|emb|CAJ99349.1| unnamed protein product [Helicobacter acinonychis str. Sheeba] Length = 427 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 151/440 (34%), Positives = 238/440 (54%), Gaps = 25/440 (5%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN DS + Y+ N ADLI++NTC +REK K++S +G+ +K Sbjct: 1 MNSRDSEHLLSELSKLDYKETNDPKIADLILINTCSVREKPERKLFSEIGQFAKIKKPNA 60 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 K G V GC A G +IL++SP V+ V+G + ++ +++ + + + +D D S Sbjct: 61 KIG------VCGCTASHMGADILKKSPSVSFVLGARNVSKISQVIHKEKAVEVAIDYDES 114 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 S + +K V + L I GCDK CT+C+VP+TRG EIS + ++ EA Sbjct: 115 --------SYAFEFFEKKAEVRSLLNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAE 166 Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 KL +NG E+ LLGQNVN + G E K FSDLL LSEI G+ R+R+T+ HP M Sbjct: 167 KLANNGTKELMLLGQNVNNY-GVRFSSEHAKVNFSDLLDKLSEIPGIERIRFTSPHPLHM 225 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D ++ + +H+P+QSGS +LK M R + + +++++++ P++ IS+ Sbjct: 226 NDEFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYNKEWFLNRVEKLKALVPEVGIST 285 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V V + RL Sbjct: 286 DIIVGFPNESDKDFEDTMEVLEKVCFDTLYSFIYSPRPFTEAGAWKERVPLEVSSLRLER 345 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLNSK-NHNIGD 449 LQ + +E VG+ VL+E + G++V GRS + + + K N G+ Sbjct: 346 LQNRHKEILEEKARLEVGKTHVVLVENRHEVDGQIVGFEGRSDTGKFIEVTCKEKRNPGE 405 Query: 450 IIKVRITDVKISTLYGELVV 469 +++V I IS + G L+ Sbjct: 406 LVEVEI----ISHVKGRLMA 421 >gi|319400912|gb|EFV89131.1| RNA modification enzyme, MiaB family protein [Staphylococcus epidermidis FRI909] Length = 448 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 243/431 (56%), Gaps = 25/431 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKDANYERVEFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D +V V GC AQ EI+ P V++VVG Q ++L + +++ + ++ + Sbjct: 65 ----IRQNPDAVVCVTGCYAQTSSAEIME-IPGVDIVVGTQDRHKLLDYIQQFQEERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L + Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRTYEELEV---PYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++G EI L G + G G D + + LL L I+GL R+R ++ Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDTIEGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I G+ + ++ +LH+P+QSGSD +LK M R++T + + + ++ PD Sbjct: 233 EASQLTDEVIDVIGNSNKVVRHLHIPLQSGSDDVLKRMRRKYTMAHFSERLTKLHQALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE---N 385 +A++SD IVGFPGE++++F+ T D + +++ F YSPR+GTP + M Q+DE N Sbjct: 293 LAVTSDVIVGFPGESEEEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDNQIDEETKN 352 Query: 386 VKAERLLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 V+ +L+ L +L ++ S F D +++EV+ E+ G+E LVG + V + Sbjct: 353 VRVHKLISLSNQLAKEYASKFED----EVLEVIPEEMGEEPQTLVGYADNYMKVRFEGDD 408 Query: 445 HNIGDIIKVRI 455 IG I+KV+I Sbjct: 409 SLIGQIVKVKI 419 >gi|15924566|ref|NP_372100.1| hypothetical protein SAV1576 [Staphylococcus aureus subsp. aureus Mu50] gi|15927156|ref|NP_374689.1| hypothetical protein SA1405 [Staphylococcus aureus subsp. aureus N315] gi|156979894|ref|YP_001442153.1| hypothetical protein SAHV_1563 [Staphylococcus aureus subsp. aureus Mu3] gi|255006362|ref|ZP_05144963.2| hypothetical protein SauraM_07835 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|13701374|dbj|BAB42668.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247347|dbj|BAB57738.1| putative 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus Mu50] gi|156722029|dbj|BAF78446.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] Length = 448 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 147/431 (34%), Positives = 238/431 (55%), Gaps = 23/431 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V+VVVG Q ++L ++ R ++ + Sbjct: 65 ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ K+E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++G EI L G + G G D + + LL L I GL R+R ++ Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I ++ +LH+P+QSGSD +LK M R++T + + + ++ PD Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+ +F+ T D + K +++ F YSPR+GTP + M +Q+DE +K Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L+ L +L + VS D ++EV+ E+ G +G LVG + V Sbjct: 353 ERVHKLITLSNQLGKLYVSKFDQ---DVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDES 409 Query: 446 NIGDIIKVRIT 456 IG I+KV+IT Sbjct: 410 LIGQIVKVKIT 420 >gi|317008919|gb|ADU79499.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter pylori India7] Length = 426 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 146/426 (34%), Positives = 233/426 (54%), Gaps = 21/426 (4%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN DS + Y+ + ADLI++NTC +REK K++S +G+ +K Sbjct: 1 MNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIGQFAKIKKPNA 60 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 K G V GC A G +IL+++P V+ V+G + ++ +++ + + + +D D S Sbjct: 61 KIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQIIHKEKAVEVAIDYDES 114 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 FE + +K + + L I GCDK C +C+VP+TRG EIS + ++ EA Sbjct: 115 AY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAE 166 Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 KL +NG E+ LLGQNVN + G GE K FSDLL LSEI G+ R+R+T+ HP M Sbjct: 167 KLANNGTKELMLLGQNVNNY-GVRFSGEHAKVDFSDLLDKLSEIPGIERIRFTSPHPLHM 225 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D ++ + +H+P+QSGS +LK M R ++ + ++R++++ P++ IS+ Sbjct: 226 NDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVGIST 285 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V V + RL Sbjct: 286 DIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRLER 345 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLNSK-NHNIGD 449 LQ + +E VG+ VL+E + ++V GRS + + + K N G+ Sbjct: 346 LQNRHKEILEEKAKLEVGKTHVVLVENRREMDNQIVGFEGRSDTGKFIEVTCKEKRNPGE 405 Query: 450 IIKVRI 455 ++KV I Sbjct: 406 LVKVEI 411 >gi|242242851|ref|ZP_04797296.1| 2-methylthioadenine synthase [Staphylococcus epidermidis W23144] gi|242233693|gb|EES36005.1| 2-methylthioadenine synthase [Staphylococcus epidermidis W23144] Length = 451 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 243/431 (56%), Gaps = 25/431 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV +AD+ V+NTC + +K + R Sbjct: 11 TLGCKVNHYETEAIWQLFKDANYERVEFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D +V V GC AQ EI+ P V++VVG Q ++L + +++ + ++ + Sbjct: 68 ----IRQNPDAVVCVTGCYAQTSSAEIME-IPGVDIVVGTQDRHKLLDYIQQFQEERQPI 122 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L + Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 123 NGVGNIMKNRTYEELEV---PYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 178 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++G EI L G + G G D + + LL L I+GL R+R ++ Sbjct: 179 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDTIEGLERIRISSI 235 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I G+ + ++ +LH+P+QSGSD +LK M R++T + + + ++ PD Sbjct: 236 EASQLTDEVIDVIGNSNKVVRHLHIPLQSGSDDVLKRMRRKYTMAHFSERLTKLHQALPD 295 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE---N 385 +A++SD IVGFPGE++++F+ T D + +++ F YSPR+GTP + M Q+DE N Sbjct: 296 LAVTSDVIVGFPGESEEEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDNQIDEETKN 355 Query: 386 VKAERLLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 V+ +L+ L +L ++ S F D +++EV+ E+ G+E LVG + V + Sbjct: 356 VRVHKLISLSNQLAKEYASKFED----EVLEVIPEEMGEEPHTLVGYADNYMKVRFEGDD 411 Query: 445 HNIGDIIKVRI 455 IG I+KV+I Sbjct: 412 SLIGQIVKVKI 422 >gi|308069953|ref|YP_003871558.1| hypothetical protein PPE_03202 [Paenibacillus polymyxa E681] gi|305859232|gb|ADM71020.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 447 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 144/444 (32%), Positives = 246/444 (55%), Gaps = 21/444 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 + GC++N YD+ + +F ++GYE+V+ AD+ ++NTC + +K Sbjct: 8 TLGCKVNFYDTEAIWQLFKNEGYEQVDFDEQTADVYLINTCTVTNTGDKKSRQ------- 60 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + I+ D +V V GC AQ EI+ P V++V+G Q ++ ++ + ++ Sbjct: 61 IIRRAIRRNPDAIVAVTGCYAQTSPAEIMD-IPGVDLVIGTQDRDKIIPFVQEIQETRQP 119 Query: 150 VDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 V+ ++ FE + + D N R AFL IQ+GC+ FCTFC++P++RG+ SR Sbjct: 120 VNAVRNIMKTRVFEEMDVPDFA-NHTR---AFLKIQDGCNNFCTFCIIPWSRGLSRSRDA 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + ++ +AR+L+ G EI L G + G G D + SDLL+ L +++GL R+R ++ Sbjct: 176 ASIIAQARQLVHAGYKEIVLTGIHTG---GYGDDMDNYDLSDLLWDLEKVEGLERIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 + + ++ L+ + H+P+Q+G D +LK M R++T E+ + IR P Sbjct: 233 IEASQIDEKMLDVLNRSTKLVRHFHIPLQAGDDTVLKRMRRKYTTEEFYNKMLMIRKAMP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D+AI++D IVGFPGETD+ FR +L+ KIG+++ F YS R GTP + M +QVDE+VK Sbjct: 293 DVAITTDVIVGFPGETDEMFRNGYELMKKIGFSEMHVFPYSKRSGTPAARMEDQVDEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 R+ L + + Q+++ + VGQ++EV+ E K ++ G L G S +V Sbjct: 353 NARVHELIQLSEQMQLAYAEKFVGQVLEVIPEVAPKGTEDSGILYGYSDNYIQLVFEGTE 412 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 +G + +V++T I+ G+LV Sbjct: 413 DMVGKVCRVKLTKAGINESEGQLV 436 >gi|153815340|ref|ZP_01968008.1| hypothetical protein RUMTOR_01574 [Ruminococcus torques ATCC 27756] gi|145847402|gb|EDK24320.1| hypothetical protein RUMTOR_01574 [Ruminococcus torques ATCC 27756] Length = 442 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 144/453 (31%), Positives = 251/453 (55%), Gaps = 25/453 (5%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 M+ +I + + ++ + + GC++N Y++ M++M GYE V + AD+ ++NTC + Sbjct: 1 MIERIGKRGKLMKKAALHNLGCKVNAYETEAMQEMLEQAGYEIVPFKEGADVYIINTCTV 60 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILRRSPIVNVVVGPQ 131 A K L R R L D +VV AGC QA EG+EI P +++V+G Sbjct: 61 TNIADRKSRQMLHRARKL-------NPDAVVVAAGCYVQAQEGKEI---DPCIDIVIGNN 110 Query: 132 TYYRLPELLERARFGKRVVDTDYSVED-----KFERLSIVDGGYNRKRGVTAFLTIQEGC 186 LPELL++ K T+Y++ED ++E L + G + + A++ +Q+GC Sbjct: 111 HKKDLPELLKQYEMEKSG-HTEYAMEDINRTKEYEELHLTKPGDHTR----AYIKVQDGC 165 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246 ++FCT+C++PY RG SR V++E R L NG E+ L G +++++ G DG++ Sbjct: 166 NQFCTYCIIPYARGRVRSRQTKDVLEEVRDLAGNGYKEVVLTGIHLSSY-GIDFDGQRHL 224 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 DL+ + +++G+ R+R + P +++ K ++ + P+ HL +QSG D LK M Sbjct: 225 L-DLIKEVHKVEGIERIRLGSLEPGIITEEFAKELSEMPKVCPHFHLSLQSGCDATLKRM 283 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 NR++T+ EY +R A+++D IVGFPGET+++F A+ VD++ + + FK Sbjct: 284 NRKYTSGEYYDRCQILRKYFDHPALTTDVIVGFPGETEEEFEASYAFVDRVDFYETHIFK 343 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 YS R GT + M Q+DE +K ER + ++ ++ D+ +G+ +EVL E+ + +G Sbjct: 344 YSKREGTKAAVMDGQIDEKIKGERSARMIALGERKKKAYEDSFIGKEVEVLFEERAQIEG 403 Query: 427 KLV--GRSPWLQSVVLNSKNHNIGDIIKVRITD 457 K V G + + L ++ + I+KVRI + Sbjct: 404 KAVMTGHTKEYMKIALETEKNISNCIVKVRIEN 436 >gi|49483824|ref|YP_041048.1| hypothetical protein SAR1653 [Staphylococcus aureus subsp. aureus MRSA252] gi|257425701|ref|ZP_05602125.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428362|ref|ZP_05604760.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430999|ref|ZP_05607379.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433687|ref|ZP_05610045.1| RNA modification protein [Staphylococcus aureus subsp. aureus E1410] gi|257436601|ref|ZP_05612645.1| RNA modification protein [Staphylococcus aureus subsp. aureus M876] gi|282904158|ref|ZP_06312046.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus C160] gi|282905985|ref|ZP_06313840.1| MiaB tRNA modifying enzyme [Staphylococcus aureus subsp. aureus Btn1260] gi|282911214|ref|ZP_06319016.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus WBG10049] gi|282914383|ref|ZP_06322169.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M899] gi|282919352|ref|ZP_06327087.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp. aureus C427] gi|282924677|ref|ZP_06332345.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp. aureus C101] gi|293503457|ref|ZP_06667304.1| MiaB tRNA modifying enzyme [Staphylococcus aureus subsp. aureus 58-424] gi|293510474|ref|ZP_06669180.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp. aureus M809] gi|293531014|ref|ZP_06671696.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M1015] gi|295428154|ref|ZP_06820786.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590880|ref|ZP_06949518.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus MN8] gi|49241953|emb|CAG40648.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271395|gb|EEV03541.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275203|gb|EEV06690.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278429|gb|EEV09065.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281780|gb|EEV11917.1| RNA modification protein [Staphylococcus aureus subsp. aureus E1410] gi|257283952|gb|EEV14075.1| RNA modification protein [Staphylococcus aureus subsp. aureus M876] gi|282313512|gb|EFB43907.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp. aureus C101] gi|282317162|gb|EFB47536.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp. aureus C427] gi|282321564|gb|EFB51889.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M899] gi|282324909|gb|EFB55219.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus WBG10049] gi|282331277|gb|EFB60791.1| MiaB tRNA modifying enzyme [Staphylococcus aureus subsp. aureus Btn1260] gi|282595776|gb|EFC00740.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus C160] gi|290920282|gb|EFD97348.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M1015] gi|291095123|gb|EFE25388.1| MiaB tRNA modifying enzyme [Staphylococcus aureus subsp. aureus 58-424] gi|291466838|gb|EFF09358.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp. aureus M809] gi|295128512|gb|EFG58146.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575766|gb|EFH94482.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus MN8] gi|312437955|gb|ADQ77026.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus TCH60] gi|315195479|gb|EFU25866.1| hypothetical protein CGSSa00_07410 [Staphylococcus aureus subsp. aureus CGS00] Length = 448 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 146/431 (33%), Positives = 238/431 (55%), Gaps = 23/431 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V+VVVG Q ++L ++ R ++ + Sbjct: 65 ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ K+E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++G EI L G + G G D + + LL L I GL R+R ++ Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I ++ +LH+P+QSGSD +LK M R++T + + + ++ PD Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+++F+ T D + K +++ F YSPR+GTP + M +Q+DE +K Sbjct: 293 LAVTSDVIVGFPGETEEEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L+ L +L + S D ++EV+ E+ G +G LVG + V Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDES 409 Query: 446 NIGDIIKVRIT 456 IG I+KV+IT Sbjct: 410 LIGQIVKVKIT 420 >gi|300871330|ref|YP_003786203.1| 2-methylthioadenine synthetase [Brachyspira pilosicoli 95/1000] gi|300689031|gb|ADK31702.1| 2-methylthioadenine synthetase [Brachyspira pilosicoli 95/1000] Length = 424 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 151/443 (34%), Positives = 238/443 (53%), Gaps = 30/443 (6%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN DS + + +G+ + + ++AD I++NTC +R A E+V+S R++ +R Sbjct: 1 MNKADSNSLINSLMQEGFIQTENHENADNIIINTCSVRAHAEERVFS---RVKLFNANRK 57 Query: 96 KEGGDLLVVVAGCVAQAEGE--EILRRSPIVNVV--VGPQTYYRLPELLERARFGKRVVD 151 K D +++ GC+AQ E E L I +V V Y + E+ R + + Sbjct: 58 KNKKDTKIIIMGCMAQTSKEHLESLGVDKIFDVYNEVNIIDYLKDEEVFVRKFNDNYIFN 117 Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211 Y EDK + AF+ I GC+ +CT+C+VP+TRG ISR +++ Sbjct: 118 KSYVDEDKPHK---------------AFIPITHGCNNWCTYCIVPHTRGKMISRKSGEIL 162 Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-----KGLVRLRYT 266 DE ++LID G EITLLGQNVN++ G +D E F++LLY + ++ K V +R+ Sbjct: 163 DEVKRLIDEGAKEITLLGQNVNSY-GLDIDNE-INFTELLYKIDKVIDEKAKDKVWIRFL 220 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHP+D L A L+ L ++HLP QSGSDRIL MNR++T EY + + +R Sbjct: 221 TSHPKDFDKELADAIWSLNSLCKHIHLPFQSGSDRILSLMNRKYTKEEYIKKVSFLREHA 280 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 D IS+D IVG+ ET+++++ T+DL++ IG+ +A+ +KYS R G+ Q D+ Sbjct: 281 DDFPISTDIIVGYADETEEEYQETLDLLESIGFEEAYLYKYSEREGSIAYKKKVQYDKVA 340 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL-NSKNH 445 A RL + RE VG+ ++I+ K+ + R+ + V++ K Sbjct: 341 GARRLTQIVNFQRELAQKLLSKQVGKKAYIMIDDIAKDNMHYLCRTKENRIVLIKKEKEL 400 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 N+GDI IT++K TL G L+ Sbjct: 401 NMGDIYYCEITEIKNHTLIGNLI 423 >gi|32266773|ref|NP_860805.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter hepaticus ATCC 51449] gi|32262825|gb|AAP77871.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 443 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 227/423 (53%), Gaps = 24/423 (5%) Query: 53 YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112 Y N + ADLI++NTC +REK +K++S +G K + K G V GC A Sbjct: 11 YTLTNDIKQADLILINTCSVREKPEKKLFSEIGAFAKEKKAGAKIG------VCGCTASH 64 Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172 GEEI++++P V+ V+G + ++ ++LER + V+ D +D + G Sbjct: 65 LGEEIIKKAPSVDFVLGARNVSKITQVLERPK----AVEVDIDYDDSTYVFASSQG---- 116 Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232 G+ A L I GCDK C++C+VP+TRG EIS ++ EA+K + +G E+ LLGQNV Sbjct: 117 -MGIKAHLNISIGCDKKCSYCIVPFTRGKEISVPKDLLISEAKKCVASGAKELLLLGQNV 175 Query: 233 NAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 N + + K F+ LL +LSEI GL R+R+T+ HP M D ++ V+ + Sbjct: 176 NNYGVRFSHSHPKTNFTQLLRALSEIDGLYRIRFTSPHPLHMDDEFLEEFASNPVIAKGI 235 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 H+P+QSGS +ILK M R + Y I +++S+ P++ I +D IVGFP E++ DF TM Sbjct: 236 HIPLQSGSSQILKMMRRGYDKQWYLNRIAKLKSLVPNVGIGTDIIVGFPTESEQDFEDTM 295 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPG----SNMLEQVDENVKAERLLCLQKKLREQQVSFND 407 +++ + + +SF YSPR T +ML V V ERL LQ +E Sbjct: 296 EVLSLVEFDTLYSFVYSPRPHTSAFEYDKSML--VSPEVAKERLARLQNLHKEILSKKAQ 353 Query: 408 ACVGQIIEVLIEKHGKEKGKLV--GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 +G+I VLIE H +G+ GRS + + + K IG I+KV IT + L G Sbjct: 354 LEIGRIHNVLIENHYNGEGQCWSEGRSSSNKLIKILDKKCEIGSIVKVEITHNEGGGLMG 413 Query: 466 ELV 468 + Sbjct: 414 RFI 416 >gi|329725446|gb|EGG61929.1| tRNA methylthiotransferase YqeV [Staphylococcus epidermidis VCU144] Length = 448 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 141/431 (32%), Positives = 243/431 (56%), Gaps = 25/431 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKDANYERVEFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D +V V GC AQ EI+ P V++VVG Q ++L + +++ + ++ + Sbjct: 65 ----IRQNPDAVVCVTGCYAQTSSAEIME-IPGVDIVVGTQDRHKLLDYIQQFQDERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L + Y R + L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRTYEELEV---PYFTDRTRDS-LKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++G EI L G + G G D + + LL L I+GL R+R ++ Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDTIEGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I G+ + ++ +LH+P+QSGSD +LK M R++T + + + ++ PD Sbjct: 233 EASQLTDEVIDVIGNSNKVVRHLHIPLQSGSDDVLKRMRRKYTMAHFSERLTKLHQALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE---N 385 +A++SD IVGFPGE++D+F+ T D + +++ F YSPR+GTP + M Q+DE N Sbjct: 293 LAVTSDVIVGFPGESEDEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDNQIDEETKN 352 Query: 386 VKAERLLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 V+ +L+ L +L ++ S F D +++EV+ E+ G+E LVG + V + Sbjct: 353 VRVHKLISLSNQLAKEYASKFED----EVLEVIPEEMGEEPHTLVGYADNYMKVRFEGDD 408 Query: 445 HNIGDIIKVRI 455 IG I+KV+I Sbjct: 409 SLIGQIVKVKI 419 >gi|309362075|emb|CAP28750.2| hypothetical protein CBG_09036 [Caenorhabditis briggsae AF16] Length = 1062 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 142/401 (35%), Positives = 217/401 (54%), Gaps = 28/401 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMNV D + + G+ + AD+++L TC IR+ A +KV++ L IR+ Sbjct: 601 TYGCQMNVSDMEIVRSIMTQYGFVESEKKEKADVVLLMTCSIRDGAEKKVWNHLKLIRS- 659 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 NS K +V V GC+A+ ++L + +VN+V GP +Y LP L+ A G + Sbjct: 660 -NSVNKSQ---IVGVLGCMAERVRHDLLAKRNLVNIVAGPDSYRDLPRLVAIAAGGSNAI 715 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + S+++ + + + K TAF++I GCD CT+CVVP+TRG E SR + + Sbjct: 716 NVQLSLDETYADVQPIRVDAATK---TAFISIMRGCDNMCTYCVVPFTRGRERSRPIESI 772 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-------------------TFSDLL 251 V+E R+L D+G +ITLLGQNVN++R + TF+ LL Sbjct: 773 VEEVRRLRDDGYKQITLLGQNVNSYRDLTISPSTSSEDRVPGFKTVYKPKTGGLTFTSLL 832 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +++ VR R+T+ HP+D LI+ L LHLP QSG D L+ M R +T Sbjct: 833 EQVADAAPEVRFRFTSPHPKDFPMQLIELIASRPNLCKQLHLPAQSGDDDTLERMGRGYT 892 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 Y +++D IR + P++ ++SDFI GF GET+ + T+ L+ ++GY+ F F YS R Sbjct: 893 RDLYLRLVDDIRKILPNVFLTSDFIAGFCGETEQAHQMTLSLIRQVGYSFCFVFPYSMRG 952 Query: 372 GTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVG 411 T + L + V E VKA+R L L RE+ + N +G Sbjct: 953 KTRAHHRLADDVPEEVKAQRHLDLTTVFREEALKLNQTLIG 993 >gi|167462198|ref|ZP_02327287.1| RNA modification enzyme, MiaB family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 449 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 142/443 (32%), Positives = 242/443 (54%), Gaps = 20/443 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N YD+ + +F ++GYE+ + AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNFYDTEAIWQLFKAEGYEQTDFEKTADVYVINTCTVTNTGDKKSRQMIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ D ++ V GC AQ EI+ P V++V+G Q ++ +++ ++ + Sbjct: 65 ----VRRNPDAIIAVTGCYAQTSPAEIME-IPGVDLVIGTQDREKIVPYVKQIESERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +FE L + D +R R AFL IQEGC+ FCTFC++P++RG+ SR Sbjct: 120 NAVRNIMKTRQFEELDVPDFA-DRTR---AFLKIQEGCNNFCTFCIIPWSRGLMRSRDPK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 VV +A L+D G EI L G + G G D E + + LL+ L ++ GL R+R ++ Sbjct: 176 SVVQQAHMLVDAGYKEIVLTGIHTG---GYGEDMEDYSLAKLLWDLDKVDGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +++ D + +LH+P+Q+G DR+LK M R++T EY + I+ I P Sbjct: 233 EASQITDEVLEVLNASDKMCRHLHIPLQAGDDRVLKRMRRKYTTEEYGRKIELIHKAMPG 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +AI++D IVGFPGET++ F + ++++ Y++ F YS R GTP + M +Q+DE +K Sbjct: 293 VAITTDVIVGFPGETEEMFENSYRFMEQMKYSEMHVFPYSKRTGTPAARMEDQIDEEIKN 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH--GKE-KGKLVGRSPWLQSVVLNSKNH 445 R+ L Q+ + GQ +EV+ E+ G E G ++G S +V Sbjct: 353 ARVHRLIDLSERMQLDYARQHEGQALEVIPEREYKGAEGSGLVMGYSDNYIQLVFEGSEQ 412 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 IG I +V++T+ I+ G+LV Sbjct: 413 LIGQICRVKLTEPGINESRGQLV 435 >gi|317501694|ref|ZP_07959885.1| MiaB family RNA modification enzyme [Lachnospiraceae bacterium 8_1_57FAA] gi|331088421|ref|ZP_08337336.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium 3_1_46FAA] gi|316896945|gb|EFV19025.1| MiaB family RNA modification enzyme [Lachnospiraceae bacterium 8_1_57FAA] gi|330408188|gb|EGG87676.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium 3_1_46FAA] Length = 431 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 142/433 (32%), Positives = 241/433 (55%), Gaps = 25/433 (5%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M++M GYE V + AD+ ++NTC + A K L R R L Sbjct: 10 GCKVNAYETEAMQEMLEQAGYEIVPFKEGADVYIINTCTVTNIADRKSRQMLHRARKL-- 67 Query: 93 SRIKEGGDLLVVVAGCVAQA-EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151 D +VV AGC QA EG+EI P +++V+G LPELL++ K Sbjct: 68 -----NPDAVVVAAGCYVQAQEGKEI---DPCIDIVIGNNHKKDLPELLKQYEMEKSG-H 118 Query: 152 TDYSVED-----KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 T+Y++ED ++E L + G + + A++ +Q+GC++FCT+C++PY RG SR Sbjct: 119 TEYAMEDINRTKEYEELHLTKPGDHTR----AYIKVQDGCNQFCTYCIIPYARGRVRSRQ 174 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 V++E R L NG E+ L G +++++ G DG++ DL+ + +++G+ R+R Sbjct: 175 TKDVLEEVRDLAGNGYKEVVLTGIHLSSY-GIDFDGQR-HLLDLIKEVHKVEGIERIRLG 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P +++ K ++ + P+ HL +QSG D LK MNR++T+ EY +R Sbjct: 233 SLEPGIITEEFAKELSEMPKVCPHFHLSLQSGCDATLKRMNRKYTSGEYYDRCQILRKYF 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 A+++D IVGFPGET+++F A+ VD++ + + FKYS R GT + M Q+DE + Sbjct: 293 DHPALTTDVIVGFPGETEEEFEASYAFVDRVDFYETHIFKYSKREGTKAAVMDGQIDEKI 352 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWLQSVVLNSKN 444 K ER + ++ ++ D+ +G+ +EVL E+ + +GK V G + + L ++ Sbjct: 353 KGERSARMIALGERKKKAYEDSFIGKEVEVLFEERAQIEGKAVMTGHTKEYMKIALETEK 412 Query: 445 HNIGDIIKVRITD 457 + I+KVRI + Sbjct: 413 NISNCIVKVRIEN 425 >gi|310659093|ref|YP_003936814.1| hypothetical protein CLOST_1789 [Clostridium sticklandii DSM 519] gi|308825871|emb|CBH21909.1| conserved protein of unknown function [Clostridium sticklandii] Length = 454 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 143/443 (32%), Positives = 241/443 (54%), Gaps = 20/443 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF + GC++N Y++ ME +F GYE + AD+ V+NTC + + +K + R Sbjct: 27 FF--TLGCKVNQYETDAMEHLFRDAGYEVTDFESFADVYVINTCTVTSMSDKKSRQMIRR 84 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + K + ++ V GC +Q +E++ VN+V+G ++ +E+ Sbjct: 85 AK-------KHNENAIIAVVGCYSQKSPDEVIAIEG-VNLVMGTSDRNKIVTEVEKLDVK 136 Query: 147 KRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 VV+ + ++ + FE LSI + Y + R AFL IQEGCD+FC++C++PYTRG SR Sbjct: 137 DHVVEVEDIMKQRVFEALSI-EETYGKTR---AFLKIQEGCDRFCSYCIIPYTRGPVRSR 192 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S++ ++ E + L NG E+ L G +V ++ G D D++ +++ I G+ R+R Sbjct: 193 SINDIISEVKSLAKNGYKEVVLTGIHVASY---GKDLGDIRLIDVIKAINNIDGIHRIRT 249 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ P ++D + ++D P+ HL +QSGSD +L+ MNRR+ EY+ +D+IR + Sbjct: 250 SSVEPLIITDDFLSELKEIDKFCPHFHLSLQSGSDSVLERMNRRYDKAEYKSAVDKIRKI 309 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD AI++D IVGFPGE+D +F T ++ I + FK+SPR GT + M QV Sbjct: 310 YPDAAITTDIIVGFPGESDAEFEETRAYLEDINLYEMHIFKFSPREGTKAAAMDNQVKPE 369 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 +K R L + ++ ++ F VG+ EVL E E G G + V + S Sbjct: 370 IKNHRSEVLIELAKKNKLEFEKKLVGKEAEVLFE--SSENGIYEGHTTNYVKVYVQSDLD 427 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 IG+I +V I ++ ++G+++ Sbjct: 428 LIGEIARVNIDRLENKKIFGKII 450 >gi|322383639|ref|ZP_08057390.1| ribosomal protein S12 methylthiotransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151851|gb|EFX44794.1| ribosomal protein S12 methylthiotransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 446 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 141/443 (31%), Positives = 241/443 (54%), Gaps = 20/443 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N YD+ + +F ++GYE+ + AD+ V+NTC + +K + R Sbjct: 5 TLGCKVNFYDTEAIWQLFKAEGYEQTDFEKTADVYVINTCTVTNTGDKKSRQMIRRA--- 61 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ D ++ V GC AQ EI+ P V++V+G Q ++ +++ ++ + Sbjct: 62 ----VRRNPDAIIAVTGCYAQTSPAEIME-IPGVDLVIGTQDREKIVPYVKQIESERQPI 116 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +FE L + D +R R AFL IQEGC+ FCTFC++P++RG+ SR Sbjct: 117 NAVRNIMKTRQFEELDVPDFA-DRTR---AFLKIQEGCNNFCTFCIIPWSRGLMRSRDPK 172 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 VV +A L+D G EI L G + G G D E + + LL+ L ++ GL R+R ++ Sbjct: 173 SVVQQAHMLVDAGYKEIVLTGIHTG---GYGEDMEDYSLAKLLWDLDKVDGLERIRISSI 229 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +++ D + +LH+P+Q+G DR+LK M R++T EY + I+ I P Sbjct: 230 EASQITDEVLEVLNASDKMCRHLHIPLQAGDDRVLKRMRRKYTTEEYGRKIELIHKAMPG 289 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +AI++D IVGFPGET++ F + ++++ Y++ F YS R GTP + M +Q+DE +K Sbjct: 290 VAITTDVIVGFPGETEEMFENSYRFMEQMKYSEMHVFPYSKRTGTPAARMEDQIDEEIKN 349 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKNH 445 R+ L Q+ + GQ +EV+ E K + G ++G S +V Sbjct: 350 ARVHRLIDLSERMQLDYARQHEGQALEVIPEREYKGAEGSGLVMGYSDNYIQLVFEGSEQ 409 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 IG I +V++T+ I+ G+LV Sbjct: 410 LIGQICRVKLTEPGINESRGQLV 432 >gi|239637612|ref|ZP_04678584.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239596830|gb|EEQ79355.1| conserved hypothetical protein [Staphylococcus warneri L37603] Length = 448 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 146/443 (32%), Positives = 242/443 (54%), Gaps = 23/443 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEADYERVDFETNADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D +V V GC AQ EI+ P V+VVVG Q ++L + ++ + ++ + Sbjct: 65 ----IRKNPDAVVCVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLDYIDEFQKERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ K+E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A L++ G EI L G + G G D + + LL L ++ GL R+R ++ Sbjct: 176 KVVEQATTLVNAGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLDQVDGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I + ++ +LH+P+QSGSD +LK M R++T + + I ++ PD Sbjct: 233 EASQLTDEVIDVLERSNKIVRHLHVPLQSGSDTVLKRMRRKYTMEHFSERITKLHEALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +AI+SD IVGFPGET+++F+ T D + K +++ F YS R+GTP + M Q+DE++K Sbjct: 293 VAITSDVIVGFPGETEEEFQETYDFIVKHQFSELHVFPYSSRIGTPAARMDNQIDEDIKN 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L+ L +L ++ S +++EV+ E+ G++ LVG + V Sbjct: 353 ERVHKLIALSDQLAKEYAS---KFENEVLEVIPEEKGEKPNTLVGYADNYMKVEFEGTED 409 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 IG IIKV+I YG+ + Sbjct: 410 LIGQIIKVKIQKADYPLNYGKAI 432 >gi|282908895|ref|ZP_06316713.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958340|ref|ZP_06375791.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus A017934/97] gi|282327159|gb|EFB57454.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus subsp. aureus WW2703/97] gi|283790489|gb|EFC29306.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus A017934/97] Length = 448 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 146/431 (33%), Positives = 238/431 (55%), Gaps = 23/431 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V+VVVG Q ++L ++ R ++ + Sbjct: 65 ----IRQNPDAVICVTGCYAQTSSAEIMG-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ K+E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++G EI L G + G G D + + LL L I GL R+R ++ Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I ++ +LH+P+QSGSD +LK M R++T + + + ++ PD Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+++F+ T D + K +++ F YSPR+GTP + M +Q+DE +K Sbjct: 293 LAVTSDVIVGFPGETEEEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L+ L +L + S D ++EV+ E+ G +G LVG + V Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDES 409 Query: 446 NIGDIIKVRIT 456 IG I+KV+IT Sbjct: 410 LIGQIVKVKIT 420 >gi|282916846|ref|ZP_06324604.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp. aureus D139] gi|283770652|ref|ZP_06343544.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19] gi|282319333|gb|EFB49685.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp. aureus D139] gi|283460799|gb|EFC07889.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19] Length = 448 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 147/443 (33%), Positives = 240/443 (54%), Gaps = 23/443 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V+VVVG Q ++L ++ R ++ + Sbjct: 65 ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ K+E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++G EI L G + G G D + + LL L I GL R+R ++ Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I ++ +LH+P+QSGSD +LK M R++T + + + ++ PD Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+ +F+ T D + K +++ F YSPR+GTP + M +Q+DE +K Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L+ L +L + S D ++EV+ E+ G +G LVG + V Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGDREGTLVGYADNYMKVQFEGDES 409 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 IG I+KV+IT G+ + Sbjct: 410 LIGQIVKVKITQANYPLNEGQAI 432 >gi|260892512|ref|YP_003238609.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4] gi|260864653|gb|ACX51759.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4] Length = 437 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 156/444 (35%), Positives = 234/444 (52%), Gaps = 17/444 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P R + GC++N D+ M +F +GY+ V+ + AD+ V+NTC + AA+K Sbjct: 9 PLRVAFYTLGCKVNQCDTAEMAALFAQRGYQIVDFEEPADVYVVNTCVVTHTAAQKSRQA 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + R +N R LVVV GC AQ + E++ P V VV G LP+L+E A Sbjct: 69 IRRAWR-RNPRS------LVVVTGCYAQLD-PELISSLPGVRVVAGTGAKKELPDLVEEA 120 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R R + + FE L G R AFL +QEGC FCT+C+VPY RG Sbjct: 121 RCSGRQLVAVKDIPSSFEDLPAYFFGRTR-----AFLKVQEGCRDFCTYCIVPYVRGPCR 175 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR L V+ AR+ + G E+ L G ++ + G+ L T + L+ L E L RL Sbjct: 176 SRPLEAVLKAARRFLQEGFVELVLTGTHLGLY-GQDLT-PSLTLAHLVERLLEFPELKRL 233 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ P +++ LI+ P+LH+P+QSG D IL+ M RR+T +YR+++ R+R Sbjct: 234 RLSSIEPLEVTADLIELMRRDSRFCPHLHIPLQSGDDEILRRMGRRYTTAQYRELVARLR 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PDIAI++D +VGFPGET++ F T L+ ++ A F YSPR GTP + +V Sbjct: 294 EAVPDIAITTDVMVGFPGETEEAFARTERLLRELELAGMHVFPYSPRPGTPAARFPGRVP 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 RL L E + + +G+ +EVL+EK +++G +G SP V++ Sbjct: 354 WPEVERRLERLLLLRDELRQRYAQRFLGRDVEVLLEKVEEKQG--LGLSPHYLPVIVFGS 411 Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467 + G +++VR+ V TLYG L Sbjct: 412 LLSPGKLVQVRVERVAEGTLYGHL 435 >gi|21283257|ref|NP_646345.1| hypothetical protein MW1528 [Staphylococcus aureus subsp. aureus MW2] gi|49486411|ref|YP_043632.1| hypothetical protein SAS1514 [Staphylococcus aureus subsp. aureus MSSA476] gi|57651969|ref|YP_186473.1| hypothetical protein SACOL1633 [Staphylococcus aureus subsp. aureus COL] gi|87160469|ref|YP_494231.1| hypothetical protein SAUSA300_1536 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195385|ref|YP_500189.1| hypothetical protein SAOUHSC_01679 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268060|ref|YP_001247003.1| RNA modification protein [Staphylococcus aureus subsp. aureus JH9] gi|150394128|ref|YP_001316803.1| RNA modification protein [Staphylococcus aureus subsp. aureus JH1] gi|151221691|ref|YP_001332513.1| hypothetical protein NWMN_1479 [Staphylococcus aureus subsp. aureus str. Newman] gi|161509804|ref|YP_001575463.1| hypothetical protein USA300HOU_1577 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253316051|ref|ZP_04839264.1| hypothetical protein SauraC_07882 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732229|ref|ZP_04866394.1| 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733173|ref|ZP_04867338.1| 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus TCH130] gi|257793652|ref|ZP_05642631.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9781] gi|258411048|ref|ZP_05681328.1| RNA modification protein [Staphylococcus aureus A9763] gi|258420148|ref|ZP_05683103.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9719] gi|258437408|ref|ZP_05689392.1| RNA modification protein [Staphylococcus aureus A9299] gi|258443614|ref|ZP_05691953.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258446821|ref|ZP_05694975.1| RNA modification protein [Staphylococcus aureus A6300] gi|258448735|ref|ZP_05696847.1| RNA modification protein [Staphylococcus aureus A6224] gi|258450595|ref|ZP_05698657.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A5948] gi|258453552|ref|ZP_05701530.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A5937] gi|262049149|ref|ZP_06022026.1| hypothetical protein SAD30_0306 [Staphylococcus aureus D30] gi|262051236|ref|ZP_06023460.1| hypothetical protein SA930_1667 [Staphylococcus aureus 930918-3] gi|269203204|ref|YP_003282473.1| hypothetical protein SAAV_1568 [Staphylococcus aureus subsp. aureus ED98] gi|282893077|ref|ZP_06301311.1| MiaB tRNA modifying enzyme [Staphylococcus aureus A8117] gi|282920125|ref|ZP_06327850.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9765] gi|282928209|ref|ZP_06335814.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A10102] gi|284024635|ref|ZP_06379033.1| hypothetical protein Saura13_08590 [Staphylococcus aureus subsp. aureus 132] gi|294848607|ref|ZP_06789353.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9754] gi|295406699|ref|ZP_06816504.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A8819] gi|296275802|ref|ZP_06858309.1| hypothetical protein SauraMR_05622 [Staphylococcus aureus subsp. aureus MR1] gi|297207705|ref|ZP_06924140.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245719|ref|ZP_06929584.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A8796] gi|300911786|ref|ZP_07129229.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus TCH70] gi|304380835|ref|ZP_07363495.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|21204697|dbj|BAB95393.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244854|emb|CAG43315.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57286155|gb|AAW38249.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus COL] gi|87126443|gb|ABD20957.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202943|gb|ABD30753.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741129|gb|ABQ49427.1| RNA modification enzyme, MiaB family [Staphylococcus aureus subsp. aureus JH9] gi|149946580|gb|ABR52516.1| RNA modification enzyme, MiaB family [Staphylococcus aureus subsp. aureus JH1] gi|150374491|dbj|BAF67751.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160368613|gb|ABX29584.1| possible 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724018|gb|EES92747.1| 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728713|gb|EES97442.1| 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus TCH130] gi|257787624|gb|EEV25964.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9781] gi|257840198|gb|EEV64662.1| RNA modification protein [Staphylococcus aureus A9763] gi|257843859|gb|EEV68253.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9719] gi|257848613|gb|EEV72601.1| RNA modification protein [Staphylococcus aureus A9299] gi|257851020|gb|EEV74963.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257854396|gb|EEV77345.1| RNA modification protein [Staphylococcus aureus A6300] gi|257858013|gb|EEV80902.1| RNA modification protein [Staphylococcus aureus A6224] gi|257861753|gb|EEV84552.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A5948] gi|257864283|gb|EEV87033.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A5937] gi|259160873|gb|EEW45893.1| hypothetical protein SA930_1667 [Staphylococcus aureus 930918-3] gi|259162818|gb|EEW47383.1| hypothetical protein SAD30_0306 [Staphylococcus aureus D30] gi|262075494|gb|ACY11467.1| hypothetical protein SAAV_1568 [Staphylococcus aureus subsp. aureus ED98] gi|269941066|emb|CBI49450.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282590016|gb|EFB95098.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A10102] gi|282594473|gb|EFB99458.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9765] gi|282764395|gb|EFC04521.1| MiaB tRNA modifying enzyme [Staphylococcus aureus A8117] gi|283470855|emb|CAQ50066.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ST398] gi|285817258|gb|ADC37745.1| MiaB family protein, possibly involved in tRNA or rRNA modification [Staphylococcus aureus 04-02981] gi|294824633|gb|EFG41056.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9754] gi|294968446|gb|EFG44470.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A8819] gi|296887722|gb|EFH26620.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177370|gb|EFH36622.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A8796] gi|298694858|gb|ADI98080.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] gi|300886032|gb|EFK81234.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus TCH70] gi|304340562|gb|EFM06496.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829964|emb|CBX34806.1| RNA modification enzyme, MiaB family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129855|gb|EFT85845.1| possible 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus CGS03] gi|315198728|gb|EFU29056.1| possible 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus CGS01] gi|320140539|gb|EFW32393.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp. aureus MRSA131] gi|320144076|gb|EFW35845.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp. aureus MRSA177] gi|323440474|gb|EGA98186.1| hypothetical protein SAO11_0770 [Staphylococcus aureus O11] gi|323443248|gb|EGB00866.1| hypothetical protein SAO46_0897 [Staphylococcus aureus O46] gi|329727386|gb|EGG63842.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp. aureus 21172] gi|329728416|gb|EGG64853.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp. aureus 21189] gi|329733119|gb|EGG69456.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp. aureus 21193] Length = 448 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 146/431 (33%), Positives = 237/431 (54%), Gaps = 23/431 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V+VVVG Q ++L ++ R ++ + Sbjct: 65 ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ K+E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++G EI L G + G G D + + LL L I GL R+R ++ Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I ++ +LH+P+QSGSD +LK M R++T + + + ++ PD Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+ +F+ T D + K +++ F YSPR+GTP + M +Q+DE +K Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L+ L +L + S D ++EV+ E+ G +G LVG + V Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDES 409 Query: 446 NIGDIIKVRIT 456 IG I+KV+IT Sbjct: 410 LIGQIVKVKIT 420 >gi|253574631|ref|ZP_04851971.1| MiaB-like tRNA modifying enzyme [Paenibacillus sp. oral taxon 786 str. D14] gi|251845677|gb|EES73685.1| MiaB-like tRNA modifying enzyme [Paenibacillus sp. oral taxon 786 str. D14] Length = 447 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 141/444 (31%), Positives = 242/444 (54%), Gaps = 21/444 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 + GC++N YD+ + +F ++GYE+V+ AD+ ++NTC + +K + R Sbjct: 8 TLGCKVNFYDTEAIWQLFKNEGYEQVDFEQSAADVYLINTCTVTNTGDKKSRQIIRRA-- 65 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 ++ D ++ V GC AQ EIL P V++V+G Q ++ +++ + ++ Sbjct: 66 -----VRRNPDAIIAVTGCYAQTSPAEILD-IPGVDLVIGTQDRDKIIPYVKQLQEQRKP 119 Query: 150 VDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 ++ ++ +FE L + + + A+L IQEGC+ FCTFC++P++RG+ SR Sbjct: 120 INAVRNIMKTREFEELDVPSFADHTR----AYLKIQEGCNNFCTFCIIPWSRGLSRSRDP 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 V+ +AR+L+ G EI L G + G G D E SDLL+ L +++GL R+R ++ Sbjct: 176 QSVIQQARQLVAAGYKEIVLTGIHTG---GYGDDLENYRLSDLLWDLDKVEGLGRIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 + D ++ + + + H+P+Q+GS+ +LK M R++T E+ I IR P Sbjct: 233 IEASQIDDRMLDVLKNSSKMCRHFHIPLQAGSNEVLKRMRRKYTIEEFEHKIKMIRDFMP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D+AI++D IVGFPGETD+ FR + + +IG+++ F YS R GTP + M +QVDE VK Sbjct: 293 DVAITTDVIVGFPGETDELFREGFEAIKRIGFSEMHVFPYSKRSGTPAARMEDQVDEEVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVLNSKN 444 R+ L + Q+++ + VGQ+++V+ EK K G + G S + Sbjct: 353 HARVHELIDLSEQMQLAYAEKFVGQVLDVIPEKDEKGTAGDGYVTGFSDNYLQIRFPGTP 412 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 G I +V++T +T G+LV Sbjct: 413 DLTGKICRVKLTQADANTCEGQLV 436 >gi|297260004|ref|XP_001103977.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like [Macaca mulatta] Length = 483 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 153/479 (31%), Positives = 254/479 (53%), Gaps = 51/479 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREKA + +++ L Sbjct: 9 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 68 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++ LK R + L + + GC+A+ EEIL R +V+V+ GP Y LP LL A Sbjct: 69 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDVLAGPDAYRDLPRLLAVAE 128 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ + S+++ + + V + +AF++I GCD C++C+VP+TRG E S Sbjct: 129 SGQQAANVLLSLDETYADVMPVQTNPS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 185 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGLDGE------ 243 R ++ +++E +KL + G+ E+TLLGQNVN++R +G Sbjct: 186 RPVASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAVSTNLSRGFTTNYKAKQG 245 Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 F+ LL +S + +R+R+T+ HP+D D +++ + D + +HLP QSGS R+L Sbjct: 246 GLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVL 305 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 ++M R +RS+ +++SSDFI GF GET++D T+ L+ ++ Y F Sbjct: 306 EAMRR-----------GVMRSL--GVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGF 352 Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 F YS R T + L + V E VK RL L RE+ N VG VL+E Sbjct: 353 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANQISVGCTQLVLVEGLS 412 Query: 423 KEK-GKLVGRSPW-LQSVVLNSKNHNI-----------GDIIKVRITDVKISTLYGELV 468 K L GR+ L+ + +++ ++ GD + V+IT TL G ++ Sbjct: 413 KRSVTDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 471 >gi|298242300|ref|ZP_06966107.1| RNA modification enzyme, MiaB family [Ktedonobacter racemifer DSM 44963] gi|297555354|gb|EFH89218.1| RNA modification enzyme, MiaB family [Ktedonobacter racemifer DSM 44963] Length = 502 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 158/498 (31%), Positives = 256/498 (51%), Gaps = 68/498 (13%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++ + + GCQMN DS R++ M G+E N MD A+L+VLNTC +R+ EK ++ L Sbjct: 10 KYHIWTVGCQMNQADSQRIQTMLEGMGWEEAN-MDQANLVVLNTCSVRKAPEEKAHNQLA 68 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCV--AQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 ++ K R DLLV + GC+ Q +E+ +R P +++ + + LP LE Sbjct: 69 LLKYAKEKR----DDLLVALMGCMIGNQKTIDELSKRYPHIDLFMKVEQADILPRFLEER 124 Query: 143 --------------------------------------------ARFGKRVVDTDYSVED 158 +R GKR V Sbjct: 125 WTPISGAGCLDIEFMPNEEALSEQAQRLTTLPNEPQTPTFATSFSRSGKRTVLPMAITPK 184 Query: 159 KFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217 ER++ K+ TA+L I GC+K CT+C+VPY RG E SR + +++ EAR L Sbjct: 185 PGERIAHYPTKIEPKKASPTAWLPIVLGCNKVCTYCIVPYRRGRERSRPIDELMIEARLL 244 Query: 218 IDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276 ++ G E+TLLGQ + ++ GLD + +DL+ SLSEI GL R+R+ TS+PR M+D Sbjct: 245 VEKGAKEVTLLGQTIESY---GLDLANQPNLADLMTSLSEIDGLDRIRFMTSYPRYMTDS 301 Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336 +I+ L + +L++PVQ+G + LK M R ++ EY + IDR+R + P+I++S+D I Sbjct: 302 MIERMASLPKVCEHLNIPVQAGHNDTLKRMKRGYSIEEYYEKIDRVRELWPNISLSTDVI 361 Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396 VGF GETD++F+ T+D+++++ + YS R GT + + + K RL +++ Sbjct: 362 VGFCGETDEEFQTTLDMIERVRFDVVHVAAYSVRPGTVAARWEDDIPLVEKKRRLHAVEE 421 Query: 397 KLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQSVVLNSKNH-----NI 447 + ++ N + +I EVL+E+ HG+++ K GR+ + V I Sbjct: 422 VQSKIALAINRQYLDKIEEVLVEESNETHGRQQWK--GRNRANKLVFFPQPEEGQQPIQI 479 Query: 448 GDIIKVRITDVKISTLYG 465 GD++ VRI +L G Sbjct: 480 GDLVNVRIERTTPWSLQG 497 >gi|325971245|ref|YP_004247436.1| RNA modification enzyme, MiaB family [Spirochaeta sp. Buddy] gi|324026483|gb|ADY13242.1| RNA modification enzyme, MiaB family [Spirochaeta sp. Buddy] Length = 433 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 143/444 (32%), Positives = 238/444 (53%), Gaps = 30/444 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++++YGCQMNV +S +E G + +DAD +LNTC +R+ A +++ LG Sbjct: 5 YWLETYGCQMNVAESNALELQLKGAGLVPASRAEDADCAILNTCTVRKSADNRIWGRLGY 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + IK L ++V GC+A+ E++ +P V+ V+G Sbjct: 65 F-----TYIKSKHPLTLIVTGCMAERLQEDLKDEAPQVDYVIGTND-------------K 106 Query: 147 KRVVDTDYSVEDKFERLS---IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +R+V+ SV+ K + S Y ++ ++++ I GC+ FC +C+VPY RG E+ Sbjct: 107 QRIVNILTSVDGKMDEHSQSYTFGNSYYQEGEFSSYIPIMNGCNNFCAYCIVPYVRGREV 166 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR- 262 SR + ++ E L GV E+TLLGQNVN++ DG F LL L K ++ Sbjct: 167 SRPVDDILAELAFLDSKGVKEVTLLGQNVNSYHFVEADGRVINFPKLLKKLCSQKNHIKW 226 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ + HP+D S LI+ + + +LH+P+QSGS RIL MNR+++ ++ +ID + Sbjct: 227 IRFDSPHPKDFSQELIQVIQEEKQIARHLHIPLQSGSSRILSLMNRKYSRSQFLTLIDDL 286 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PDI S+D +VGFP ET+++++ T ++ + +AF + Y+PR GT M EQ+ Sbjct: 287 RRAIPDITFSTDVMVGFPSETEEEYQETRSVLAHMQCLEAFMYYYNPREGTKAVEMNEQI 346 Query: 383 DENVKAERLLCL---QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSV 438 DE K RL L Q + QQ V ++EVL+ + K K ++G++ + V Sbjct: 347 DEEEKGRRLQSLIEFQHAIFAQQ---KQKRVQSVVEVLVTQVSKHDSKSMLGKTEHNEMV 403 Query: 439 VLNSKNHNIGDIIKVRITDVKIST 462 S +G+II V++T + +T Sbjct: 404 AFPS-TAKLGEIITVQLTSLNGNT 426 >gi|332975771|gb|EGK12652.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Desmospora sp. 8437] Length = 448 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 145/433 (33%), Positives = 233/433 (53%), Gaps = 26/433 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M +F QGYE+V+ AD+ V+NTC + K + R Sbjct: 8 TLGCKVNAYETEAMWKLFQRQGYEKVDFEQKADVYVINTCTVTNTGDRKSRQMIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ + +V V GC AQ EI+ P V+VVVG Q +L + +E R ++ V Sbjct: 65 ----VRKNPEAVVAVTGCYAQTSSAEIMD-IPGVDVVVGTQGRDKLLQYIEEHRQTRQPV 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +FE + V R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVKNIMKTREFEEMD-VPSFSERTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRKPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V+ +AR+L+D G EI L G + G G D E +DLL+ L +++GL R+R ++ Sbjct: 176 SVLRQARQLVDAGYKEIVLTGIHTG---GYGEDFEDYKLADLLWDLDKVEGLKRIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 + D +I D + +LH+P+Q+G D +LK M RR+T EYR+ I+ + P Sbjct: 233 EASQIDDRVIDVLNKSDKMCRHLHIPLQAGDDVVLKRMRRRYTVDEYRRKIEHLHRAMPG 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +AI+SD IVGFPGET++ F L++++G+++ F YS R GTP + M +QV VK Sbjct: 293 VAITSDVIVGFPGETEEQFENGYRLIEELGFSELHVFPYSTRTGTPAARMTDQVPAEVKQ 352 Query: 389 E---RLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNS 442 + RL+ L +L +++ G+++EV+ E K + G L G S + Sbjct: 353 DRVARLIALSDRL---ALTYASKYAGEVLEVIPEGPLKDDPDSGWLAGYSDNYLQIAFPG 409 Query: 443 KNHNIGDIIKVRI 455 +G + +VR+ Sbjct: 410 NEELVGQVCRVRL 422 >gi|82751179|ref|YP_416920.1| hypothetical protein SAB1448c [Staphylococcus aureus RF122] gi|82656710|emb|CAI81137.1| conserved hypothetical protein [Staphylococcus aureus RF122] Length = 448 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 146/431 (33%), Positives = 237/431 (54%), Gaps = 23/431 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V+VVVG Q ++L ++ R ++ + Sbjct: 65 ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ K+E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++G EI L G + G G D + + LL L I GL R+R ++ Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLEMINGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I ++ +LH+P+QSGSD +LK M R++T + + + ++ PD Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+ +F+ T D + K +++ F YSPR+GTP + M +Q+DE +K Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L+ L +L + S D ++EV+ E+ G +G LVG + V Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDES 409 Query: 446 NIGDIIKVRIT 456 IG I+KV+IT Sbjct: 410 LIGQIVKVKIT 420 >gi|167533556|ref|XP_001748457.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772976|gb|EDQ86621.1| predicted protein [Monosiga brevicollis MX1] Length = 1020 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 150/488 (30%), Positives = 256/488 (52%), Gaps = 44/488 (9%) Query: 15 SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74 + I +Q ++ ++ +++YGCQMNV D+ + + G R ++ ++AD+ +L TC IRE Sbjct: 107 APIDEQSLLGRKVHIEAYGCQMNVSDAEIAWSILKNAGCVRCDTAEEADVTLLVTCAIRE 166 Query: 75 KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134 A K++S L +++ K R+ + + V GC+A+ ++L + +++V GP Y Sbjct: 167 NAENKIWSRLNQLKAHKR-RLGRTRNFQIGVLGCMAERLKHKLLEQEKAIDLVAGPDAYR 225 Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 LP +L + G+ V+ S+++ + ++ V N AF++IQ GC C++C+ Sbjct: 226 DLPRMLMDSAQGQAQVNVLLSLDETYADITPVRTNPN---SPAAFVSIQRGCANNCSYCI 282 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG-KGLDGEKCT------- 246 VP+TRG E SR + +V+E L GV E+TLLGQNVN++R G+D + Sbjct: 283 VPFTRGRERSRQIETIVEEVAHLSRQGVKEVTLLGQNVNSYRDLTGIDDVRNEPVVSMAK 342 Query: 247 --------------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292 F +LL +++E+ +R+R+T+ HP+D D +++A + +H Sbjct: 343 GFGTIYKPRRGGRGFGELLRAVAEVDPTMRIRFTSPHPKDFPDDVLEAIATTPNICKQIH 402 Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 +P QSGS R+L+ M R HT Y ++ +R V P +A+SSDFI GF GET+ D T Sbjct: 403 IPAQSGSTRMLELMRRNHTREAYLDLVQHMRQVIPGVALSSDFIAGFCGETEADHEDTRS 462 Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSN-MLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411 L++ + Y AF F YS R T + M + V E+VK RL ++ + N +G Sbjct: 463 LIEMVDYDMAFLFAYSMRAKTHAYHRMQDDVPEDVKKRRLEEIRDQFYGGATLKNQRRIG 522 Query: 412 QIIEVLIEKHG-KEKGKLVGRS-------------PWLQSVVLNSKNHNIGDIIKVRITD 457 + VL+EK + + + GR+ P +Q ++ + N+G+ + V+I Sbjct: 523 SLQLVLVEKRSRRNQDEWSGRTDGNIRAVFTDAEVPDVQGLL---RRANVGEYVVVQIEG 579 Query: 458 VKISTLYG 465 TL G Sbjct: 580 ATAMTLRG 587 >gi|293376256|ref|ZP_06622499.1| MiaB-like protein [Turicibacter sanguinis PC909] gi|325845151|ref|ZP_08168460.1| tRNA methylthiotransferase YqeV [Turicibacter sp. HGF1] gi|292645148|gb|EFF63215.1| MiaB-like protein [Turicibacter sanguinis PC909] gi|325488816|gb|EGC91216.1| tRNA methylthiotransferase YqeV [Turicibacter sp. HGF1] Length = 434 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 145/445 (32%), Positives = 254/445 (57%), Gaps = 26/445 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + ++F ++GYE+V+ AD+ ++NTC + +K + R Sbjct: 8 TLGCKVNHYETEAVWELFKNEGYEKVDFKGVADVYIINTCTVTNTGDKKSRQVIRR---- 63 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I+ + ++ V GC AQ + +EI+ V++V+G ++P+L+++ R ++ + Sbjct: 64 ---AIRRNPEAVMCVMGCYAQTKPKEIMDIEG-VDIVIGTHGRDQIPQLVQKYREERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 +V D FE L++ +R R A L IQ+GC+ FCT+C++P+ RG S+ Sbjct: 120 SQIQNVFKVDGFETLNVSQFS-DRTR---ATLKIQDGCNNFCTYCIIPWARGTVRSQKPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V+D+ ++L+ NG CE+ L G + A+ G D E +F LL L +I GL R+R ++ Sbjct: 176 IVIDQVKQLVANGHCEVVLTGIHTAAY---GEDLEDYSFGKLLQDLIKIDGLKRIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +M+D +I A D ++ +LH+P+Q+GS+ ILK M R +T E+ + +R + + Sbjct: 233 EASEMTDDVITAMKMSDKIVNHLHMPLQAGSNEILKGMKRPYTLAEFEAKVKELRELFDN 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +AI++D IVGFPGET++ F T++ + +IG+++ F YS R GTP + M QV E VK+ Sbjct: 293 LAITTDVIVGFPGETEELFNETVETIKRIGFSELHVFPYSVRNGTPAARMENQVPEMVKS 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSPWLQSVVLNSK 443 R LL L ++L ++ S +C G+I++V+ E+ H KE G LVG + V + Sbjct: 353 MRVNKLLALSEQLAKEYAS---SCEGKILQVIPEEASHTKE-GYLVGHASNYVKVEFKGE 408 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 IG+++ V++ GE+V Sbjct: 409 TDLIGEVVPVKVVKADYPICLGEIV 433 >gi|317013714|gb|ADU81150.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter pylori Gambia94/24] Length = 426 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 144/426 (33%), Positives = 234/426 (54%), Gaps = 21/426 (4%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN DS + Y+ + ADLI++NTC +REK K++S +G+ +K Sbjct: 1 MNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIGQFAKIKKPNA 60 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 K G V GC A G +IL+++P V+ V+G + ++ +++ + + + +D D S Sbjct: 61 KIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKAVEVAIDYDES 114 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 FE + +K + + L I GCDK C +C+VP+TRG EIS + ++ EA Sbjct: 115 AY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAE 166 Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 KL +NG E+ LLGQNVN + G E K FSDLL LSEI+G+ R+R+T+ HP M Sbjct: 167 KLANNGTKELMLLGQNVNNY-GVRFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPLHM 225 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D ++ + +H+P+QSGS +LK M R ++ + +++++++ P++ IS+ Sbjct: 226 NDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVEKLKALVPEVGIST 285 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V V + RL Sbjct: 286 DIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRLER 345 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLNSK-NHNIGD 449 LQ + +E VG+ VL+E + G++V GRS + + + K N G+ Sbjct: 346 LQNRHKEILEEKAKLEVGKTHVVLVENRREMDGQIVGFEGRSDTGKFIEVTCKEKRNPGE 405 Query: 450 IIKVRI 455 +++V I Sbjct: 406 LVRVEI 411 >gi|302333252|gb|ADL23445.1| radical SAM domain protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 448 Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 147/431 (34%), Positives = 236/431 (54%), Gaps = 23/431 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V+VVVG Q ++L ++ R ++ + Sbjct: 65 ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ K+E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++G EI L G + G G D + + LL L I GL R+R ++ Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I ++ +LH+P+QSGSD +LK M R++T + + + ++ PD Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+ +F+ T D + K +++ F YSPR+GTP + M +Q+DE VK Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEVKN 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L+ L +L + S D ++EV+ E+ G G LVG + V Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGNTVGTLVGYADNYMKVQFEGDES 409 Query: 446 NIGDIIKVRIT 456 IG I+KV+IT Sbjct: 410 LIGQIVKVKIT 420 >gi|228476133|ref|ZP_04060841.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|314936303|ref|ZP_07843650.1| Fe-S oxidoreductase [Staphylococcus hominis subsp. hominis C80] gi|228269956|gb|EEK11436.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|313654922|gb|EFS18667.1| Fe-S oxidoreductase [Staphylococcus hominis subsp. hominis C80] Length = 448 Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 144/430 (33%), Positives = 241/430 (56%), Gaps = 23/430 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKDANYERVDFETNADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I+ D +V V GC AQ EI+ P V+VVVG Q ++L +++ R ++ + Sbjct: 65 ----IRRNPDAVVCVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLSYIDQFREERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRTYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+ +G EI L G + G G D + + LL L EI GL R+R ++ Sbjct: 176 KVVEQATQLVQSGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLEEIDGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I + + ++ +LH+P+QSGSD +LK M R++T + + + ++ PD Sbjct: 233 EASQLTDEVIDVLKNSNKVVRHLHVPLQSGSDTVLKRMRRKYTMEHFSERLTKLHDALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+++F+ T D + K +++ F YS R+GTP + M +Q+DE++K Sbjct: 293 LAVTSDVIVGFPGETEEEFQETYDFIVKHKFSELHVFPYSQRIGTPAARMGDQIDESIKN 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L+ L +L ++ S + +++EV+ E+ G+ K LVG + V Sbjct: 353 ERVHKLIALSDQLAKEYASKFE---NEVLEVIPEEVGETKNTLVGYADNYMKVEFEGSED 409 Query: 446 NIGDIIKVRI 455 IG+I+KV+I Sbjct: 410 LIGEIVKVKI 419 >gi|325997150|gb|ADZ49358.1| Dimethyl allyl adenosine tRNA methylthiotransferase [Helicobacter pylori 2017] Length = 426 Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 149/440 (33%), Positives = 239/440 (54%), Gaps = 25/440 (5%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN DS + Y+ + ADLI++NTC +REK K++S +G+ +K Sbjct: 1 MNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIGQFAKIKKPNA 60 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 K G V GC A G +IL+++P V+ V+G + ++ +++ + + + +D D S Sbjct: 61 KIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKAVEVAIDYDES 114 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 FE + +K + + L I GCDK C +C+VP+TRG EIS + ++ EA Sbjct: 115 AY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAE 166 Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 KL +NG E+ LLGQNVN + G E K FSDLL LSEI+G+ R+R+T+ HP M Sbjct: 167 KLANNGTKELMLLGQNVNNY-GVRFSSEHAKVGFSDLLDKLSEIQGIERIRFTSPHPLHM 225 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +D ++ + +H+P+QSGS +LK M R ++ + ++R++++ P++ IS+ Sbjct: 226 NDEFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVGIST 285 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V V + RL Sbjct: 286 DIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRLER 345 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLNSK-NHNIGD 449 LQ + +E VG+ VL+E + G++V GRS + + + K N G+ Sbjct: 346 LQNRHKEILEEKAKLEVGKTHVVLVENRREMDGQIVGFEGRSDTGKFIEVTCKEKRNPGE 405 Query: 450 IIKVRITDVKISTLYGELVV 469 +++V I IS G L+ Sbjct: 406 LVRVEI----ISHSKGRLIA 421 >gi|315645963|ref|ZP_07899084.1| RNA modification enzyme, MiaB family protein [Paenibacillus vortex V453] gi|315278724|gb|EFU42038.1| RNA modification enzyme, MiaB family protein [Paenibacillus vortex V453] Length = 447 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 139/443 (31%), Positives = 241/443 (54%), Gaps = 20/443 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N YD+ + F ++GY++V+ AD+ ++NTCH+ +K + R Sbjct: 8 TLGCKVNFYDTEAIWQYFKNEGYDQVDFEQTADVYLINTCHVTNTGDKKSRQMIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ + +V V GC AQ EIL P V++V+G Q ++ + ++ ++ + Sbjct: 65 ----VRRNPEAIVAVTGCYAQTSPAEILD-IPGVDLVIGNQDRDKIMDFIQDIEKTRQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ FE + + D R R AFL IQ+GC+ FCTFC++P++RG+ SR Sbjct: 120 NAVRNIMKTRVFEEMDVPDFA-ERTR---AFLKIQDGCNNFCTFCIIPWSRGLSRSRDPK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++ +A +L+ G EI L G + G G D E+ SDLL+ L + GL R+R ++ Sbjct: 176 SIIQQAHQLVGAGYKEIVLTGIHTG---GYGDDLEEYRLSDLLWDLDRVDGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 + + ++ + +LH+P+Q+G D +LK M R++T E+ + IR PD Sbjct: 233 EASQIDEKMLDVLNRSTKMCRHLHIPLQAGDDTVLKRMRRKYTTEEFYNKMGLIRQAMPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + I++D IVGFPGETD+ FR DL+ I +++ F YS R GTP + M +QVDE VK Sbjct: 293 VGITTDVIVGFPGETDEMFRNGYDLMKAIQFSEMHVFPYSKRTGTPAARMEDQVDEEVKN 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQSVVLNSKNH 445 R+ L + Q+++ + VG+I++V+ E+ K + GK+ G S ++ N + Sbjct: 353 ARVHDLIDLSEQLQLAYAEQFVGKILDVIPEREYKGAPKGGKMQGYSDNYLQLIFNGSSD 412 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 G + +V++T ++ GEL+ Sbjct: 413 LEGKLCRVKVTKAGVNECEGELL 435 >gi|326791229|ref|YP_004309050.1| RNA modification enzyme, MiaB family [Clostridium lentocellum DSM 5427] gi|326541993|gb|ADZ83852.1| RNA modification enzyme, MiaB family [Clostridium lentocellum DSM 5427] Length = 435 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 148/434 (34%), Positives = 245/434 (56%), Gaps = 23/434 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N YD+ + + F QGYE V+ + AD+ V+NTC + + K L + + + Sbjct: 8 TLGCKVNQYDTEAVLEKFKEQGYEVVDFNEYADVYVVNTCTVTHLSDRKCRQMLRKTKKI 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-V 149 D ++V GC AQ ++I + ++++VG + +L++ KR Sbjct: 68 -------NSDSILVAMGCYAQIAADKIKDQVEEIDIIVGTNKRNEIVDLVDNFEKEKRQT 120 Query: 150 VDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 ++T ++ D +FE L I D G R R ++ +QEGC+ +C++C++PYTRG SR Sbjct: 121 INTVSNIMDVGEFEELHISDMG-ERTR---VYVKVQEGCNNYCSYCIIPYTRGKIRSRKE 176 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 QVV+E KL+ G EI L G +V A+ G D LL + EI+G+ R+R ++ Sbjct: 177 EQVVEEVTKLVGLGFKEIILTGIHVLAY---GKDLGNTDLIQLLKRVHEIEGVERIRMSS 233 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D I A ++ + + HL +QSGS+ ILK MNR++TA EY+ ++R+R++ P Sbjct: 234 IEPVAITDEFIYALKEMPKVCHHFHLSLQSGSETILKRMNRKYTAVEYKASVERLRTLWP 293 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D+AI++D IVGFPGET+++F T++ V + AQ F +SPR GTP + M QV +K Sbjct: 294 DVAITTDVIVGFPGETEEEFLETVEFVKDVHLAQIHIFPFSPREGTPAAKMRAQVAPEIK 353 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG-RSPWLQSVVLNSKNHN 446 R L + + ++++ + + + +EVL EKH + ++ G S +L+ VL N Sbjct: 354 EHRAKVLSEVEKTLRLAYMEQFIDKELEVLFEKH--HENEVTGYTSNYLKVQVLG--NET 409 Query: 447 IGDII-KVRITDVK 459 I + I KVRI +K Sbjct: 410 IENTIQKVRIDAIK 423 >gi|4929773|gb|AAD34147.1|AF152097_1 CGI-05 protein [Homo sapiens] Length = 554 Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 149/454 (32%), Positives = 242/454 (53%), Gaps = 42/454 (9%) Query: 17 IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 ++D+ + QR ++++YGCQMNV D+ + GY R + AD+I+L TC IREK Sbjct: 52 MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRPVT-SRADVILLVTCSIREK 110 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A + +++ L +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y Sbjct: 111 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 170 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 LP LL A G++ + S+++ + + V + +AF++I GCD C++C+V Sbjct: 171 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 227 Query: 196 PYTRGIEISRSLSQVVDEARKLIDN--------------GVCEITLLGQNVNAWR----- 236 P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R Sbjct: 228 PFTRGRERSRPIASILEEVKKLSEQVFLPPRPPKVLGLQGLKEVTLLGQNVNSFRDNSEV 287 Query: 237 ----------GKGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280 +G T F+ LL +S + +R+R+T+ HP+D D +++ Sbjct: 288 QFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQL 347 Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340 + D + +HLP QSGS R+L++M R ++ Y +++ IR P +++SSDFI GF Sbjct: 348 IHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFC 407 Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLR 399 GET++D T+ L+ ++ Y F F YS R T + L + V E VK RL L R Sbjct: 408 GETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFR 467 Query: 400 EQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRS 432 E+ N VG VL+E K L GR+ Sbjct: 468 EEATKANQTSVGCTQLVLVEGLSKRSATDLCGRN 501 >gi|221140004|ref|ZP_03564497.1| hypothetical protein SauraJ_00040 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751406|gb|ADL65583.1| radical SAM domain protein [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 448 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 146/431 (33%), Positives = 236/431 (54%), Gaps = 23/431 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V+VVVG Q ++L ++ R ++ + Sbjct: 65 ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ K+E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++G EI L G + G G D + + LL L I GL R+R ++ Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I ++ +LH+P+QSGSD +LK M R++T + + + ++ PD Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+ +F+ T D + K +++ F YSPR+GTP M +Q+DE +K Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAVRMDDQIDEEIKN 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L+ L +L + S D ++EV+ E+ G +G LVG + V Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDES 409 Query: 446 NIGDIIKVRIT 456 IG I+KV+IT Sbjct: 410 LIGQIVKVKIT 420 >gi|298736784|ref|YP_003729314.1| bifunctional enzyme involved in thiolation and methylation of tRNA [Helicobacter pylori B8] gi|298355978|emb|CBI66850.1| bifunctional enzyme involved in thiolation and methylation of tRNA [Helicobacter pylori B8] Length = 426 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 143/425 (33%), Positives = 233/425 (54%), Gaps = 19/425 (4%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN DS + Y+ + ADLI++NTC +REK K++S +G+ +K Sbjct: 1 MNSRDSEHLLSELSKLDYKETSDPKTADLILINTCSVREKPERKLFSEIGQFAKIKKPNA 60 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 K G V GC A G +IL+++P V+ V+G + ++ +++ R + + +D D S Sbjct: 61 KIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHREKAVEVAIDYDES 114 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 FE + +K + + L I GCDK C +C+VP+TRG EIS + ++ EA Sbjct: 115 AY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILREAE 166 Query: 216 KLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274 KL +NG E+ LLGQNVN + + + K FSDLL LSEI+G+ R+R+T+ HP M+ Sbjct: 167 KLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPLHMN 226 Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334 D ++ + +H+P+QSGS +LK M R ++ + ++R++++ P++ IS+D Sbjct: 227 DRFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVGISTD 286 Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394 IVGFP E+D DF TM++++K+ + +SF YSPR T E+V V + RL L Sbjct: 287 IIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRLERL 346 Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLNSK-NHNIGDI 450 Q + +E VG+ VL+E + ++V GRS + + + K N G++ Sbjct: 347 QNRHKEILEEKAKLEVGKTHVVLVENRREMDDQIVGFEGRSDTGKFIEVACKEKRNPGEL 406 Query: 451 IKVRI 455 ++V I Sbjct: 407 VRVEI 411 >gi|261405595|ref|YP_003241836.1| RNA modification enzyme, MiaB family [Paenibacillus sp. Y412MC10] gi|261282058|gb|ACX64029.1| RNA modification enzyme, MiaB family [Paenibacillus sp. Y412MC10] Length = 447 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 141/443 (31%), Positives = 237/443 (53%), Gaps = 20/443 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N YD+ + F ++GY++V+ AD+ ++NTCH+ +K + R Sbjct: 8 TLGCKVNFYDTEAIWQYFKNEGYDQVDFEQTADVYLINTCHVTNTGDKKSRQMIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ + +V V GC AQ EIL P V++V+G Q ++ + + ++ + Sbjct: 65 ----VRRNPEAIVAVTGCYAQTSPAEILD-IPGVDLVIGNQDREKIMDFIHDIEKTRQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ FE + + D R R AFL IQ+GC+ FCTFC++P++RG+ SR Sbjct: 120 NAVRNIMKTRVFEEMDVPDFA-ERTR---AFLKIQDGCNNFCTFCIIPWSRGLSRSRDPK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++ +A +L+ G EI L G + G G D E SDLL+ L + GL R+R ++ Sbjct: 176 SIIKQAHQLVGAGYKEIVLTGIHTG---GYGDDLEDYRLSDLLWDLDRVDGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 + + ++ + +LH+P+Q+G D +LK M R++T E+ + IR PD Sbjct: 233 EASQIDEKMLDVLNRSSKMCRHLHIPLQAGDDTVLKRMRRKYTTEEFYNKMGLIRQAMPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + I++D IVGFPGETD+ FR DL+ I +++ F YS R GTP + M +QVDE VK Sbjct: 293 VGITTDVIVGFPGETDEMFRNGYDLMKAIQFSEMHVFPYSKRTGTPAARMEDQVDEEVKN 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQSVVLNSKNH 445 R+ L + Q+++ + VGQI+ V+ E+ K + GK+ G S +V N Sbjct: 353 ARVHDLIDLSEQLQLAYAERFVGQILNVIPEREYKGAPKGGKMQGYSDNYLQLVFNGSPD 412 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 G + +V++T ++ GEL+ Sbjct: 413 LEGKLCRVKVTKAGVNECEGELL 435 >gi|303241628|ref|ZP_07328127.1| RNA modification enzyme, MiaB family [Acetivibrio cellulolyticus CD2] gi|302590848|gb|EFL60597.1| RNA modification enzyme, MiaB family [Acetivibrio cellulolyticus CD2] Length = 438 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 147/440 (33%), Positives = 238/440 (54%), Gaps = 18/440 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +MF + GYE V+ + AD+ V+NTC + + K + R + Sbjct: 8 TLGCKVNQYETEAILEMFRNNGYEIVDFEEFADVYVINTCTVTNLSDRKSRQMIRRAK-- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K D +VVVAGC AQ +E+L P VN+V+G + ++ E ++ G+ V Sbjct: 66 -----KNNEDSIVVVAGCYAQTSPDEVLS-IPGVNLVIGTKDKGKIIENIKSIEEGRNKV 119 Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + D +FE L G K AF+ IQEGC +FC++C++PY RG SR + Sbjct: 120 NLVQDIMKTREFEEL----GVEVYKERTRAFIKIQEGCSQFCSYCIIPYARGPIRSRPVE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V+DE RKL NG EI L G ++ ++ G D + + D++ + EI G+ R+R + Sbjct: 176 YVLDEVRKLALNGYKEIVLTGIHIASY---GKDIKTTSLIDIIKKVHEIDGVERVRLGSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ + G L+ + P+ H+ +QSG D LK MNRR+T EYR I +RS D Sbjct: 233 EPTTITHEFVNEIGKLEKVCPHFHISLQSGCDSTLKRMNRRYTTEEYRSSIALLRSGIKD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A+++D +VGFPGETD++F T+ +++I ++ FKYS R GTP + Q+ K Sbjct: 293 VAVTTDVMVGFPGETDEEFNETVKFLNEISFSAMHVFKYSQRKGTPAAEFSNQISPKKKD 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNI 447 ER L + ++ FN G+ +EVL E+ K E G + G +P V+ + Sbjct: 353 ERSEVLIELSSKKTKEFNKRFEGRKMEVLFEQEVKSESGLIEGLTPNYIRVLCEGEPDLN 412 Query: 448 GDIIKVRITDVKISTLYGEL 467 G I+KV++ + + G++ Sbjct: 413 GKILKVKLNEAVEDYITGQI 432 >gi|255072327|ref|XP_002499838.1| radical SAM protein with TRAM and UPF0004 domains [Micromonas sp. RCC299] gi|226515100|gb|ACO61096.1| radical SAM protein with TRAM and UPF0004 domains [Micromonas sp. RCC299] Length = 507 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 150/487 (30%), Positives = 256/487 (52%), Gaps = 51/487 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R ++++YGCQMNV DS + + + Y+ ++ +DAD I++NTC IR+ A K+++ L Sbjct: 3 RRAYIETYGCQMNVSDSEIVASVLGASDYDLTDTHEDADAILVNTCAIRDGAEAKIWARL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++ +K R ++ V+ GC+ + ++L + ++V GP Y LP L++ AR Sbjct: 63 RQLKAVKRDRDVRPAPVVGVL-GCMGERLKGKLLEADGLADLVAGPDAYRDLPRLIDAAR 121 Query: 145 FGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G ++T S+E+ + ++ V G +AF++I GC+ C FC+VP+TRG Sbjct: 122 GGGDQGLAINTQLSLEETYADIAPV---RRSDAGPSAFVSIMRGCNNMCAFCIVPFTRGR 178 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR------------GKGL--------D 241 E SR ++DE R+L D G E+TLLGQNVN++ G D Sbjct: 179 ERSRPRGSILDEVRRLSDEGCKEVTLLGQNVNSYADTKTSDAFERYYAPGFKSVYKPRRD 238 Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301 G F++LL +++++ +R+R+T+ HP+D D +++ + LH+P QSGS Sbjct: 239 G-AVRFAELLDAVADVDPEMRVRFTSPHPKDFPDEVLRVIASRANVAKQLHMPAQSGSSS 297 Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361 +L+ M R +T Y +++R R +A+SSDFI GF GET+++ T+ L+ +GY + Sbjct: 298 VLERMRRGYTREAYLDLVERARRDILGVALSSDFISGFCGETEEEHADTVSLMKAVGYEK 357 Query: 362 AFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 AF F YS R T + L + V E+VK RL + R+ + N +G++ VL+E Sbjct: 358 AFMFAYSMRDKTAAARHLTDDVPEDVKKRRLAEVIDAQRKGAEAANAREIGRVHCVLVEG 417 Query: 421 HGKEKG-KLVGRSPWLQSVVLNSKNH---------------------NIGDIIKVRITDV 458 K ++ GR+ + V+++ + + GD + VRI Sbjct: 418 ESKRSDERMSGRTCTNKRVIIDGVDTFAEYSPSSSSSGNDSPAVVGIHSGDYVAVRIDRA 477 Query: 459 KISTLYG 465 +TLYG Sbjct: 478 GANTLYG 484 >gi|251796225|ref|YP_003010956.1| RNA modification enzyme, MiaB family [Paenibacillus sp. JDR-2] gi|247543851|gb|ACT00870.1| RNA modification enzyme, MiaB family [Paenibacillus sp. JDR-2] Length = 448 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 136/443 (30%), Positives = 242/443 (54%), Gaps = 20/443 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N YD+ + +F ++GYE+V+ AD+ ++NTC + +K + R Sbjct: 8 TLGCKVNFYDTEAIWQLFKNEGYEQVDFESTADVYLINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ D ++ V GC AQ EI+ P V++V+G Q ++ + + ++ V Sbjct: 65 ----VRRNPDAVIAVTGCYAQTSPAEIMA-IPGVDLVIGTQDREKIMTFVNQIHDDRQPV 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +FE L + D +N + AFL IQEGC+ FCTFC++P++RG+ SR Sbjct: 120 NAVRNIMKTREFEELDVPD--FNER--TRAFLKIQEGCNNFCTFCIIPWSRGLSRSRDPK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V+++A++L+ +G E+ L G + G G D E DLL+ L +I+GL R+R ++ Sbjct: 176 SVLEQAKQLVASGYKEVVLTGIHTG---GYGDDMENYRLVDLLWDLDKIEGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 + D +I + +LH+P+Q+G +LK M R++T E+ + RIR P Sbjct: 233 EASQIDDAMIDVLNRSTKMCRHLHIPLQAGDTSVLKRMRRKYTTDEFAAKLKRIREAMPG 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +AI++D IVGFPGET++ F ++++G+++ F YS R GTP + M +QVD+ VK Sbjct: 293 VAITTDVIVGFPGETEEMFENGYKFMEEVGFSEMHVFPYSKRTGTPAARMDDQVDDEVKN 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER+ L + Q+++ + VG +++V+ E K G ++G S +V Sbjct: 353 ERVHKLIDLSEKMQLAYAEQHVGAVLDVIPERDYKGAPGTGLVMGYSDNYIQIVFEGTEA 412 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 +G + +V+IT+ ++ +LV Sbjct: 413 LVGKLCRVKITEAGVNECRAQLV 435 >gi|213514974|ref|NP_001134025.1| CDK5 regulatory subunit-associated protein 1 [Salmo salar] gi|209156200|gb|ACI34332.1| CDK5 regulatory subunit-associated protein 1 [Salmo salar] Length = 469 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 215/363 (59%), Gaps = 26/363 (7%) Query: 30 KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 ++YGCQMNV D+ + +GY+R + + +AD+++L TC IREKA + +++ L ++ Sbjct: 100 ETYGCQMNVNDTEIAWSILQKKGYQRTSDVAEADVVLLVTCSIREKAEQTIWNRLRQLTA 159 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 +K R+K + + V GC+A+ E+L R +++V+ GP Y LP LL A G++ Sbjct: 160 MKKRRLKTRVPMKIGVLGCMAERLKSELLEREKLLDVLAGPDAYRDLPRLLSVAHGGQQA 219 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + S+E+ + + V ++ +G++AF++I GCD C++C+VP+TRG E SR +S Sbjct: 220 SNVLLSLEETYADVMPV---HHSPQGLSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVSS 276 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT----------------------F 247 +++E L + GV E+T+LGQNVN++R + + C+ F Sbjct: 277 ILEEVHILSEQGVKEVTMLGQNVNSYRDTS-EEQFCSSEPGQLSRGFRTVYRARPGGLRF 335 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 +DLL +S I +R+R+T+ HP+D D +++ + + +HLP QSGS +L++M Sbjct: 336 ADLLDRVSLIDPDMRIRFTSPHPKDFPDEVLQLIKERANICKQVHLPAQSGSSTVLQAMR 395 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R ++ Y +++D I+++ P +++SSDFI GF GET++D T+ L+ ++ Y F F Y Sbjct: 396 RGYSREAYLELVDNIKTIIPGVSLSSDFISGFCGETEEDHLQTLSLIREVRYNVGFLFAY 455 Query: 368 SPR 370 S R Sbjct: 456 SMR 458 >gi|329314252|gb|AEB88665.1| RNA modification enzyme, MiaB family [Staphylococcus aureus subsp. aureus T0131] Length = 448 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 145/431 (33%), Positives = 236/431 (54%), Gaps = 23/431 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V+VVVG Q ++L ++ ++ + Sbjct: 65 ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFHKERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ K+E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++G EI L G + G G D + + LL L I GL R+R ++ Sbjct: 176 KVVEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I ++ +LH+P+QSGSD +LK M R++T + + + ++ PD Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+ +F+ T D + K +++ F YSPR+GTP + M +Q+DE +K Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L+ L +L + S D ++EV+ E+ G +G LVG + V Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDES 409 Query: 446 NIGDIIKVRIT 456 IG I+KV+IT Sbjct: 410 LIGQIVKVKIT 420 >gi|294501299|ref|YP_003564999.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium QM B1551] gi|294351236|gb|ADE71565.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium QM B1551] Length = 452 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 143/444 (32%), Positives = 245/444 (55%), Gaps = 21/444 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F QGYERV AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKGQGYERVEYEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ + +E+ + ++ + Sbjct: 65 ----VRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRVKMLDYIEQFKKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKTRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +VV +A++L+D G EI L G + G G D + + LL L S++KGL R+R ++ Sbjct: 176 EVVAQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAQLLRDLESQVKGLKRIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ ++++ +LH+P+QSGS+ +LK M R++T + + ++R++ P Sbjct: 233 IEASQITDEVIEVLDQSEMVVRHLHIPLQSGSNTVLKRMRRKYTMEFFGERLNRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + G+++ F YS R GTP + M +Q+DE VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKEHGFSELHVFPYSKRTGTPAARMTDQIDEEVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 ER+ L + + + G+++EV+ E K E G VG + VV + Sbjct: 353 NERVHRLIELSNQLAKEYASTFEGEVLEVIPEEKYKEDPESGLYVGYTDNYLKVVFKASE 412 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 +G ++KV+I+ GE V Sbjct: 413 EMVGKLVKVKISKAGYPYNEGEFV 436 >gi|297584652|ref|YP_003700432.1| RNA modification enzyme, MiaB family [Bacillus selenitireducens MLS10] gi|297143109|gb|ADH99866.1| RNA modification enzyme, MiaB family [Bacillus selenitireducens MLS10] Length = 441 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 143/428 (33%), Positives = 238/428 (55%), Gaps = 18/428 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F ++GYE+ AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFQAEGYEKEAFDQLADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D +V V GC AQ E++ P V++VVG Q ++L ++ + + V Sbjct: 65 ----IRKNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVVGTQDRHKLIPYIKEFQVSREPV 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKARVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRKPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V+ +A +L++ G EI L G + G G D + + LL L I+GL R+R ++ Sbjct: 176 DVLSQANQLVEAGYKEIVLTGIHTG---GYGEDMKDYNLAGLLRDLETIEGLRRIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I+ D ++ +LH+P+QSGSD +LK M R++T YR+ ++R++ P Sbjct: 233 EASQITDEVIEVINRSDKVVNHLHIPLQSGSDTVLKRMRRKYTTSFYRERVERLKEALPG 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGETD++F T L+ IGY++ F +S R GTP + M EQVD+ +K Sbjct: 293 LAVTSDVIVGFPGETDEEFEETYQLIRDIGYSELHVFPFSKRTGTPAARMDEQVDDGIKN 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447 ER+ L +Q + + G+I+E++ E+ +LVG + V + ++ I Sbjct: 353 ERVHRLIALSDQQAKEYASSYEGEIVEMIPEERDADHPERLVGYTDNYLKVAVELEDSYI 412 Query: 448 GDIIKVRI 455 G+I+KVRI Sbjct: 413 GEIVKVRI 420 >gi|188527075|ref|YP_001909762.1| conserved hypothetical ATP-binding protein [Helicobacter pylori Shi470] gi|188143315|gb|ACD47732.1| conserved hypothetical ATP-binding protein [Helicobacter pylori Shi470] Length = 426 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 141/425 (33%), Positives = 232/425 (54%), Gaps = 19/425 (4%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN DS + Y+ + ADLI++NTC +REK K++S +G+ +K Sbjct: 1 MNSRDSEHLLSELSKLDYKETSDPKAADLILINTCSVREKPERKLFSEIGQFAKIKKPNA 60 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 K G V GC A G +IL+++P V+ V+G + ++ +++ + + + +D D S Sbjct: 61 KIG------VCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKAVEVAIDYDES 114 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 FE + +K + + L I GCDK C +C+VP+TRG EIS + ++ EA Sbjct: 115 AY-AFE-------FFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAE 166 Query: 216 KLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274 KL NG E+ LLGQNVN + + + K FSDLL LSEI+G+ R+R+T+ HP M+ Sbjct: 167 KLASNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPLHMN 226 Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334 D ++ + +H+P+QSGS +LK M R ++ + +++++++ P++ IS+D Sbjct: 227 DAFLERFAKNPKVCKSIHMPLQSGSSTVLKMMRRGYSKEWFLNRVEKLKALVPEVGISTD 286 Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394 IVGFP E+D DF TM++++K+ + +SF YSPR T E+V V + RL L Sbjct: 287 IIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRLERL 346 Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV---GRSPWLQSVVLNSK-NHNIGDI 450 Q + +E VG+ VL+E + ++V GRS + + + K N G++ Sbjct: 347 QNRHKEILEEKAKLEVGKTHVVLVENRREIDNQIVGFEGRSDTGKFIEVACKEKRNPGEL 406 Query: 451 IKVRI 455 ++V I Sbjct: 407 VRVEI 411 >gi|242020507|ref|XP_002430694.1| CDK5 regulatory subunit-associated protein, putative [Pediculus humanus corporis] gi|212515884|gb|EEB17956.1| CDK5 regulatory subunit-associated protein, putative [Pediculus humanus corporis] Length = 581 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 145/433 (33%), Positives = 235/433 (54%), Gaps = 32/433 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ F++ +GCQMNV D+ + + GY+R S DDAD+I + TC IRE A K++ L Sbjct: 80 QKVFLEVHGCQMNVNDAEIVLSVLQKHGYQRTLSKDDADVIFILTCSIRESAESKIWFKL 139 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +LK + L + + GC+A+ ++++ + IV++V GP Y LP LL Sbjct: 140 KELNHLKKKKKN----LKIGLLGCMAERLKDKVIEKEKIVDLVAGPDAYKDLPRLLTTTS 195 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++ ++ S ++ + + V N V+AF++I GCD CT+C+VP+TRG E S Sbjct: 196 NNQKAINVLLSFDETYADVMPVRLNEN---NVSAFVSIMRGCDNMCTYCIVPFTRGRERS 252 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG--------------LDGEKCT---- 246 R + +++E + L D GV +ITLLGQNVN++R DG K Sbjct: 253 RPIDSILEEVKILSDQGVKQITLLGQNVNSYRDIKSKEYLSTFNEPTVVADGFKTVYKPK 312 Query: 247 -----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301 FS LL +SE+ +R+R+T+ HP+D D ++ + + ++HLP+QSGS++ Sbjct: 313 IGGVRFSTLLDKVSEVNPEMRIRFTSPHPKDFPDDVLHLIKERKNICNFIHLPIQSGSNQ 372 Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361 +L+ M R +T Y ++++ IRS+ P+I +S+D I GF GET+ D TM+++ I Y Q Sbjct: 373 VLERMRRGYTREAYIKLVENIRSLIPNIVLSTDIITGFCGETEKDHEDTMEMIRLIQYHQ 432 Query: 362 AFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + F YS R T E V + VK R + + R N++ + Q+ +LIE Sbjct: 433 MYFFPYSMREKTTAHRRYEDDVPQEVKMRRFQEVGAEFRRISKKLNESQINQVQVILIEG 492 Query: 421 HGKEKGK-LVGRS 432 K + L GR+ Sbjct: 493 FSKRSNEYLAGRN 505 >gi|329924074|ref|ZP_08279337.1| tRNA methylthiotransferase YqeV [Paenibacillus sp. HGF5] gi|328940913|gb|EGG37221.1| tRNA methylthiotransferase YqeV [Paenibacillus sp. HGF5] Length = 447 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 140/443 (31%), Positives = 237/443 (53%), Gaps = 20/443 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N YD+ + F ++GY++V+ AD+ ++NTCH+ +K + R Sbjct: 8 TLGCKVNFYDTEAIWQYFKNEGYDQVDFEQTADVYLINTCHVTNTGDKKSRQMIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ + +V V GC AQ EIL P V++V+G Q ++ + + ++ + Sbjct: 65 ----VRRNPEAIVAVTGCYAQTSPAEILD-IPGVDLVIGNQDREKIMDFIHDIEKTRQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ FE + + D R R AFL IQ+GC+ FCTFC++P++RG+ SR Sbjct: 120 NAVRNIMKTRVFEEMDVPDFA-ERTR---AFLKIQDGCNNFCTFCIIPWSRGLSRSRDPK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++ +A +L+ G EI L G + G G D E SDLL+ L + GL R+R ++ Sbjct: 176 SIIKQAHQLVGAGYKEIVLTGIHTG---GYGDDLEDYRLSDLLWDLDRVDGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 + + ++ + +LH+P+Q+G D +LK M R++T E+ + IR PD Sbjct: 233 EASQIDEKMLDVLNRSSKMCRHLHIPLQAGDDTVLKRMRRKYTTEEFYNKMGLIRQAMPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + I++D IVGFPGET++ FR DL+ I +++ F YS R GTP + M +QVDE VK Sbjct: 293 VGITTDVIVGFPGETEEMFRNGYDLMKAIQFSEMHVFPYSKRTGTPAARMEDQVDEEVKN 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK---EKGKLVGRSPWLQSVVLNSKNH 445 R+ L + Q+++ + VGQI+ V+ E+ K + GK+ G S +V N Sbjct: 353 ARVHDLIDLSEQLQLAYAERFVGQILNVIPEREYKGAPKGGKMQGYSDNYLQLVFNGSPD 412 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 G + +V++T ++ GEL+ Sbjct: 413 LEGKLCRVKVTKAGVNECEGELL 435 >gi|258424004|ref|ZP_05686886.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9635] gi|257845625|gb|EEV69657.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9635] Length = 448 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 145/431 (33%), Positives = 236/431 (54%), Gaps = 23/431 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V+VVVG Q ++L ++ R ++ + Sbjct: 65 ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ K+E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRKYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A +L+++ EI L G + G G D + + LL L I GL R+R ++ Sbjct: 176 KVVEQATQLVNSEYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETINGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I ++ +LH+P+QSGSD +LK M R++T + + + ++ PD Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+ +F+ T D + K +++ F YSPR+GTP + M +Q+DE +K Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L+ L +L + S D ++EV+ E+ G +G LVG + V Sbjct: 353 ERVHKLITLSNQLGKLYASKFDQ---DVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDES 409 Query: 446 NIGDIIKVRIT 456 IG I+KV+IT Sbjct: 410 LIGQIVKVKIT 420 >gi|66807387|ref|XP_637416.1| hypothetical protein DDB_G0287079 [Dictyostelium discoideum AX4] gi|74853166|sp|Q54KV4|CK5P1_DICDI RecName: Full=CDK5RAP1-like protein gi|60465830|gb|EAL63904.1| hypothetical protein DDB_G0287079 [Dictyostelium discoideum AX4] Length = 607 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 154/465 (33%), Positives = 245/465 (52%), Gaps = 53/465 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV D + + S GY N + AD++ LNTC IRE A K++ L Sbjct: 107 RKVWIETYGCQMNVSDEEVICSIMKSSGYTISNDFNTADIVFLNTCSIRENAEAKIWLRL 166 Query: 85 GRIRNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +R + R K+G +L+V V GC+A+ E++L V++VVGP Y LP LL Sbjct: 167 TELRAI---RRKQGRPNLIVGVLGCMAERLKEKLLESDMKVDIVVGPDAYRSLPSLLATL 223 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G++ ++ S ++ + + V N+ V+A+++I GC+ C++C+VP+TRG Sbjct: 224 EDGEQQTAINVILSADETYADIKPVRKSDNQ---VSAYVSIMRGCNNMCSYCIVPFTRGR 280 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG----------LDGEK------- 244 E SR + ++ E + L D G EITLLGQNVN++ +D +K Sbjct: 281 ERSRPIDSILREVKDLSDQGFKEITLLGQNVNSFNYYEESNNNNNENFIDTQKNKLELES 340 Query: 245 -----------------CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287 TF+ L+ +S++ +R+R+T+ HP+D D L++ + + Sbjct: 341 LKPREGFKTIYKSPKKGITFTKLMELVSKVDPEIRIRFTSPHPKDFPDDLLELIKNQPNI 400 Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347 LH+P QSGS ++L+SM R +T Y ++ID I+ V P AISSDFI GF GE+D D Sbjct: 401 CKQLHIPAQSGSSKVLESMRRGYTRESYIELIDTIKRVLPGCAISSDFISGFCGESDQDH 460 Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLL----CLQKKLREQQ 402 T+ L++ +GY AF F YS R T L + V +K RL K+L+E+ Sbjct: 461 NETISLMEYVGYENAFMFMYSLREKTHAHRQLKDDVPTTLKNSRLTQVVDTFYKRLKEK- 519 Query: 403 VSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNHN 446 N +G VL++ K K VGR+ + V++++ N Sbjct: 520 ---NQLEIGNHHLVLVDGFSKRSEKDFVGRTDTNKKVLISNDIEN 561 >gi|304316648|ref|YP_003851793.1| MiaB-like protein tRNA modifying enzyme [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778150|gb|ADL68709.1| MiaB-like protein tRNA modifying enzyme [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 452 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 151/446 (33%), Positives = 241/446 (54%), Gaps = 22/446 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF + GC++N Y++ M ++F + GY+ V+ + AD+ ++NTC + + K Sbjct: 25 FF--TLGCKVNQYETEAMVEIFKNSGYDVVDFDEYADVYIINTCTVTGRGDMKSRQ---E 79 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 IR K K D ++ V GC +Q E+L P VN+V+G + + +L+E+ Sbjct: 80 IRKAK----KINPDSIIAVVGCYSQVASNEVLNL-PEVNIVLGTKNKGEVVKLVEKVSGD 134 Query: 147 KRVVDTDYSVED--KFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K ++ ++ D KFE L I G+ R A+L IQ+GC++FCT+C++PY RG Sbjct: 135 KEKINAVENIFDNKKFEELKISAQEGHTR-----AYLKIQDGCNQFCTYCIIPYARGPVR 189 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++DE ++L DNG E+ L G +V ++ G D E D++ + E+ G+ R+ Sbjct: 190 SRRPDNILDEVKRLRDNGYKEVILTGIHVASY---GKDLENINLLDIIKMIHEVDGIERI 246 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ P +++ IK L + H+ +QSGSD LK M R++T EY +IIDRIR Sbjct: 247 RMSSIEPTFLTEDFIKEVASLPKFCRHYHVSLQSGSDSTLKRMGRKYTTSEYMEIIDRIR 306 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 D+AI++D +VGFPGETD++F T + + I +++ FKYS R GT +N +QV Sbjct: 307 KYIKDVAITTDVMVGFPGETDEEFNETYEFLKSIEFSKMHVFKYSRRAGTKAANYPDQVK 366 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442 +VK ER L K E + F VG + VL E+ K+ +G + G + V + S Sbjct: 367 NSVKEERSKKLIKLSEENEAKFYKKFVGSTLNVLFEQSVKDVEGYVEGLTDNYIRVAVES 426 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 I+ V++ VK G+LV Sbjct: 427 DLKIKNKILPVKLIGVKEDFAIGKLV 452 >gi|153813388|ref|ZP_01966056.1| hypothetical protein RUMOBE_03807 [Ruminococcus obeum ATCC 29174] gi|149830565|gb|EDM85656.1| hypothetical protein RUMOBE_03807 [Ruminococcus obeum ATCC 29174] Length = 321 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 128/303 (42%), Positives = 187/303 (61%), Gaps = 15/303 (4%) Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229 Y K GV I GC+ FC++C+VPY RG E SR +V E ++L+ +GV E+ LLG Sbjct: 28 YTFKSGVN----IMFGCNNFCSYCIVPYVRGRERSREPEAIVKEVKRLVADGVSEVMLLG 83 Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289 QNVN++ GK L+ TF+ LL L +++GL R+R+ TSHP+D+SD LI+ + Sbjct: 84 QNVNSY-GKTLE-HPVTFAQLLEMLEDVEGLKRIRFMTSHPKDLSDELIETMAKSKKICH 141 Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349 +LHLP+QSGS RILK+MNRR+ +Y ++D+IR+ PDI++++D IVGFPGET++DF Sbjct: 142 HLHLPLQSGSSRILKAMNRRYDKEKYLNLVDKIRTAIPDISLTTDIIVGFPGETEEDFEE 201 Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER----LLCLQKKLREQQVSF 405 T+D+V K GY AF+F YS R GTP + M EQ+ ++V ER L +Q++ R + F Sbjct: 202 TLDVVSKCGYDTAFTFLYSRRSGTPAAEM-EQIPQDVAKERFNRLLALVQQEGRIRSSRF 260 Query: 406 NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 G + EVL+E+ +EKG GR+ + V +G +KV + + G Sbjct: 261 E----GSVQEVLVEEESREKGIFTGRTEYNLLVHFPGTADLLGKYVKVSLDECHGFYYMG 316 Query: 466 ELV 468 LV Sbjct: 317 SLV 319 >gi|187251522|ref|YP_001876004.1| MiaB family RNA modification enzyme [Elusimicrobium minutum Pei191] gi|186971682|gb|ACC98667.1| RNA modification enzyme, MiaB family [Elusimicrobium minutum Pei191] Length = 410 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 140/437 (32%), Positives = 227/437 (51%), Gaps = 41/437 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R F++++GCQMN+ DS M +G E ++ AD++++NTC IRE A K SFL Sbjct: 2 KRVFIQTFGCQMNIADSAEMLAHLSRRGVEETKDIESADIVLVNTCTIREHAEHKAVSFL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143 GR+ K +++ AGC A+ GE + + P +++V G + ++L E Sbjct: 62 GRLAKWKAKDCSR----VIIFAGCAAERLGEALKKDYPFLDIVAGAKGIDNFSKMLDESG 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 F + SV K GV ++TI GC+ C++C+VP RG Sbjct: 118 LFAVNAQNYTQSV----------------KSGVLDYVTIMRGCNFACSYCIVPSVRGGVK 161 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S +++ +L V EI LLGQ VNA++ + D F+DLL + +KG+ R+ Sbjct: 162 CLSPEVILENCAELAKKNVKEIVLLGQTVNAYKYEDTD-----FADLLLKAASVKGVERV 216 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ + HP ++ LI D + ++HLPVQSGSD+ILK M R Y+ + +I++I Sbjct: 217 RFMSPHPAFITPKLIDTIAKNDKIAKHIHLPVQSGSDKILKEMKR---GYDSKTVIEKIS 273 Query: 324 SVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 ++ + + +S+D IVG+P ET++DF T++LVDK ++ A+ FK+SPR TP ++ Sbjct: 274 RLKENGVLVSTDIIVGYPTETEEDFERTLELVDKCAFSFAYCFKFSPRRNTPAYSLKPLA 333 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSPWLQSVVL 440 + +RL L K+R G VL+E G+ G L ++P Sbjct: 334 SDKEVEKRLDILLNKVRHFSAKAYKDAAGTEQMVLMETVYKGRTSGNLWVKTP------- 386 Query: 441 NSKNHNIGDIIKVRITD 457 K H +G +++VRI + Sbjct: 387 --KQHPVGSMVRVRIKE 401 >gi|224476684|ref|YP_002634290.1| putative radical SAM family protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222421291|emb|CAL28105.1| putative radical SAM family protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 448 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 142/443 (32%), Positives = 244/443 (55%), Gaps = 23/443 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GY+RV +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKDAGYDRVEFDTNADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D +V V GC AQ EI+ P V+VVVG Q +L + +E + ++ + Sbjct: 65 ----IRKNPDAVVCVTGCYAQTSSAEIME-IPGVDVVVGTQDRTKLLDYIEEFKVERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ K+E L + Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRKYEELEV---PYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A L+++G EI L G + G G D + + LL L I GL R+R ++ Sbjct: 176 KVVEQATTLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETIDGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I + + ++ +LH+P+QSGSD +LK M R+++ + + + ++ P Sbjct: 233 EASQLTDEVINVISNSNKVVRHLHVPLQSGSDSVLKRMRRKYSMAHFSERLMKLHEALPG 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+++F+ T D + K +++ F YS R GTP + M +Q+DE++K Sbjct: 293 LAVTSDVIVGFPGETEEEFQETYDFILKHHFSELHVFPYSARTGTPAARMDDQIDESIKN 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L+ L +L ++ S + +++EV+ E+ G+ G LVG + V + Sbjct: 353 ERVHKLIELSNQLAKEYASHFE---NEVLEVIPEEAGEAPGTLVGYADNYMKVEFEGDDS 409 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 IG++++V+IT G +V Sbjct: 410 LIGELVRVKITQAGYPLNQGHVV 432 >gi|299535792|ref|ZP_07049113.1| hypothetical protein BFZC1_07203 [Lysinibacillus fusiformis ZC1] gi|298728992|gb|EFI69546.1| hypothetical protein BFZC1_07203 [Lysinibacillus fusiformis ZC1] Length = 444 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 141/445 (31%), Positives = 242/445 (54%), Gaps = 22/445 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F +GY+R AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEEGYDRTEFDHQADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q +L +E+ R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRTKLLGYIEQYRAERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKNRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL L + +KGL RLR ++ Sbjct: 176 EVLHQAQQLVDAGYLEIVLTGIHTG---GYGQDLKDYNLAQLLRDLEANVKGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ + +++ +LH+P+QSGSD +LK M R++T + + + ++ P Sbjct: 233 IEASQLTDEVIEVLRESKIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFGERLTKLHEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D+A++SD IVGFPGET+++F T + + +++ F +SPR GTP + M +Q+DE++K Sbjct: 293 DLAVTSDVIVGFPGETEEEFMETYNFIRDHKFSELHVFPFSPRTGTPAARMEDQIDEDIK 352 Query: 388 AE---RLLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 E RL+ L +L ++ S F D + I E + +E+G L G + +V Sbjct: 353 NERVHRLISLNDQLAKEYASRFEDQVLEVIPEEFVHDGSEEEGLLTGYTDNYLKIVFEGP 412 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 IG ++KV+IT G+ V Sbjct: 413 ESLIGQLVKVKITQAGYPHSQGQFV 437 >gi|295706646|ref|YP_003599721.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium DSM 319] gi|294804305|gb|ADF41371.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium DSM 319] Length = 452 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 142/444 (31%), Positives = 245/444 (55%), Gaps = 21/444 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F QGYERV AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKGQGYERVEYEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ + +E+ + ++ + Sbjct: 65 ----VRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRVKMLDYIEQFKKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKTRIYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +VV +A++L+D G EI L G + G G D + + LL L S++KGL R+R ++ Sbjct: 176 EVVAQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAQLLRDLESQVKGLKRIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ ++++ +LH+P+QSGS+ +LK M R++T + + ++R++ P Sbjct: 233 IEASQITDEVIEVLDQSEMVVRHLHIPLQSGSNTVLKRMRRKYTMEFFGERLNRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + G+++ F YS R GTP + M +Q+DE VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKEHGFSELHVFPYSKRTGTPAARMTDQIDEEVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + G+++EV+ E K E G VG + VV + Sbjct: 353 NQRVHRLIELSNQLAKEYASTFEGEVLEVIPEEKYKEDPESGLYVGYTDNYLKVVFKASE 412 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 +G ++KV+I+ GE V Sbjct: 413 EMVGKLVKVKISKAGYPYNEGEFV 436 >gi|319937480|ref|ZP_08011885.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1] gi|319807320|gb|EFW03929.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1] Length = 438 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 145/439 (33%), Positives = 237/439 (53%), Gaps = 22/439 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S M +F GYE V+ D AD+ V+NTC + K R + Sbjct: 10 TLGCKVNTYESEAMLKLFHQAGYEAVDFKDKADVYVINTCTVTNTGDSKS-------RQM 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ +V V GC +Q EE++ V VV+G Q ++ + + + ++ V Sbjct: 63 IRKAIRQNEKAIVCVVGCYSQVASEEVVSIEG-VGVVLGTQFRNQIVDFVNEYKTTQKPV 121 Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 D +FE L I + N + AFL IQ+GC+ FCT+C++PY RG SR+ Sbjct: 122 IKVADVMKLSRFEDLDIDEFTRNTR----AFLKIQDGCNNFCTYCIIPYARGQIRSRTPE 177 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVRLRYTT 267 V+ +A+ L+D+G EI L G + G G D E +F DLL L+ +IKGL RLR ++ Sbjct: 178 SVLKQAQSLVDHGFVEIVLTGIHT---AGYGQDFENYSFYDLLVDLTTKIKGLKRLRISS 234 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++ +I +++ +LH+P+QSG D LK MNR +T E+ + ++ P Sbjct: 235 IEMSQITQEIIDLIAMSPIIVDHLHIPIQSGCDATLKRMNRHYTTAEFSDKLRDLKEKLP 294 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +++++D IVGFPGET+++F+ T ++K+ + Q F YS R GTP + M +Q+D +VK Sbjct: 295 SLSVTTDVIVGFPGETEEEFQQTYQWIEKMHFNQLHVFPYSIRKGTPAARMKDQIDGHVK 354 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 +R+ L + Q F +G+ +EVLI E+HG ++VG + V ++ + + Sbjct: 355 HDRVKSLMDLSQRLQSEFASYQIGKTLEVLIEERHGD---RMVGHASNYLKVHVDLPDSS 411 Query: 447 IGDIIKVRITDVKISTLYG 465 IG I +V+I + L G Sbjct: 412 IGHIYRVKILSQNGTELIG 430 >gi|222054021|ref|YP_002536383.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. FRC-32] gi|221563310|gb|ACM19282.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. FRC-32] Length = 451 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 157/452 (34%), Positives = 247/452 (54%), Gaps = 31/452 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRN 89 S GC N+ D+ M YE +AD+I++NTC I+E E + + L Sbjct: 13 SLGCPKNLVDAEVMLGYLSKDSYEVTTDEHEADIIIVNTCSFIKEAKQESIDTILDLADR 72 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKR 148 ++R K +++V GC+ Q EE+++ P V++ VG Y R+ E++ R ++ Sbjct: 73 KHDARCK-----MLIVTGCLPQRYQEELVKELPEVDIFVGTGDYPRIAEIIAEKRGLSEQ 127 Query: 149 VV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + D ++ +D+ RL TA+L I EGC C++CV+P RG SR Sbjct: 128 LCYTGDPNFLYDDELPRL-------QSSPYYTAYLKIAEGCSNCCSYCVIPSLRGSFRSR 180 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +++ EA+ L+ GV EI L+ Q++ + GK L+ E T L+ SL +++GL +R Sbjct: 181 PMDKLLREAKGLVAKGVREINLIAQDITGY-GKDLN-EGATLEALIRSLVKLEGLQWIRL 238 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P +SD LIK + D + YL +P+Q SD ILK MNRR + E R++I ++R+ Sbjct: 239 LYAYPDGISDSLIKLIKEEDKVCKYLDIPLQHISDPILKQMNRRSSEAEIRELIAKLRTE 298 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P IAI + FIVGFPGETDDDF+ + V++ + + F YS GTP M EQV E Sbjct: 299 VPGIAIRTSFIVGFPGETDDDFKKLVQFVEETRFDRMGVFCYSREEGTPAFEMAEQVSER 358 Query: 386 VKAERLLCLQKKLREQ-QVSF--NDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ- 436 +K ER +K +R Q +VSF N + V + VLIE + +E KG+ ++P + Sbjct: 359 IKRER---YKKLMRTQARVSFKHNRSLVDKEEMVLIEGYSEETELLLKGRSSRQAPDIDG 415 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + + N +G+I+++RITD L GE+V Sbjct: 416 QVYITAGNAQVGEIVRLRITDSSDYDLIGEIV 447 >gi|39998295|ref|NP_954246.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sulfurreducens PCA] gi|81701038|sp|Q747R0|RIMO_GEOSL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|39985241|gb|AAR36596.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sulfurreducens PCA] gi|298507231|gb|ADI85954.1| ribosomal protein S12 methylthiotransferase [Geobacter sulfurreducens KN400] Length = 447 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 152/451 (33%), Positives = 238/451 (52%), Gaps = 29/451 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRN 89 S GC N+ D+ M YE +AD+I++NTC I+E E + + L Sbjct: 12 SLGCPKNLVDAEVMLGRLAKDRYEITTDEREADIIIVNTCSFIKEAKQESIDTILDLADR 71 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE----RARF 145 ++ R + L++V GC+ Q EE+ R P V++ VG Y R+ E++E R Sbjct: 72 KQDGRCR-----LLIVTGCLPQRYQEELARELPEVDIFVGTGDYPRIAEIIEEKSSRPEQ 126 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + D ++ ++ RL N TA+L I EGC C++CV+P RG SR Sbjct: 127 LRYIGDPNFVFDESLTRL-------NSSPAYTAYLKIAEGCSNCCSYCVIPSLRGAFRSR 179 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L V+ EAR L+ G EI L+ Q++ + G+ L G + L+ L+ I GL +R Sbjct: 180 PLESVLAEARSLVAGGAREINLIAQDITTY-GRDLPGAP-SLETLIRELAAIDGLAWIRL 237 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P ++D LI+ + + YL LP+Q SD ILK MNRR T + R+++ R+R Sbjct: 238 LYAYPDGITDGLIQTIKNEPKVCKYLDLPIQHISDPILKRMNRRSTEPQIRELVARLREE 297 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDIA+ + IVGFPGET++DFR + V++ + + F YS GTP + M +QV E Sbjct: 298 IPDIALRTSLIVGFPGETEEDFRTLLHFVEEAQFDRLGVFCYSREEGTPAAEMPDQVSER 357 Query: 386 VKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ-S 437 VK ER L K + +VSF N + +V++E + +E KG+ ++P + Sbjct: 358 VKRERYKKLMKA--QARVSFKRNRRLIDTEEQVIVEGYSEETELLLKGRSSRQAPDIDGQ 415 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + + N N+GDI+++RITD L GE++ Sbjct: 416 VYITAGNANVGDIVRLRITDSSDYDLIGEII 446 >gi|239827771|ref|YP_002950395.1| RNA modification enzyme, MiaB family [Geobacillus sp. WCH70] gi|239808064|gb|ACS25129.1| RNA modification enzyme, MiaB family [Geobacillus sp. WCH70] Length = 451 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 245/447 (54%), Gaps = 27/447 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER + AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKKAGYERKDFDSRADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I+ D +V V GC AQ E++ P V++V+G Q ++ E +ER + ++ + Sbjct: 65 ----IRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRGKILEYIERFQRERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ FE + + + +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVSNIMKTRVFEEMDVPEFT-DRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + +F+ LL L E + GL RLR ++ Sbjct: 176 EVIRQAQQLVDAGYKEIVLTGIHTG---GYGTDLKDYSFAALLRDLDEQVVGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ D ++ +LH+P+QSGS+ +LK M R++T + + + R+R V P Sbjct: 233 IEASQITDEIIEVLQRSDKIVRHLHIPLQSGSNTVLKRMRRKYTVEFFAERLQRLREVFP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 ++AI+SD IVGFPGET+++F T + + +++ F YS R GTP + M QVDE VK Sbjct: 293 ELAITSDVIVGFPGETEEEFMETYHFIREQRFSELHVFPYSKRTGTPAARMPNQVDEEVK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLN 441 E RL+ L +L ++ S + GQ++EV+ E K E G +G + V Sbjct: 353 NERVHRLIALSDQLAKEYASQFE---GQVLEVIPEERDKENPESGLYIGYTDNYLKVKFP 409 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +G+I+KV+IT GE V Sbjct: 410 ATEEMVGEIVKVKITKAGYPYNEGEFV 436 >gi|126652827|ref|ZP_01724972.1| Fe-S oxidoreductase [Bacillus sp. B14905] gi|126590363|gb|EAZ84483.1| Fe-S oxidoreductase [Bacillus sp. B14905] Length = 449 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 142/445 (31%), Positives = 241/445 (54%), Gaps = 22/445 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F +GY+R AD+ V+NTC + +K + R Sbjct: 13 TLGCKVNHYETEAIWQLFKDEGYDRTEFDQQADVYVINTCTVTNTGDKKSRQVIRRA--- 69 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V++VVG Q +L +++ R ++ + Sbjct: 70 ----IRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRTKLLGYIDQYRAERQPI 124 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 125 NAVRNIMKNRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 180 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL L + +KGL RLR ++ Sbjct: 181 EVLHQAQQLVDAGYLEIVLTGIHTG---GYGQDLKDYNLAQLLRDLEANVKGLKRLRISS 237 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I + +++ +LH+P+QSGSD +LK M R++T + + + ++ P Sbjct: 238 IEASQLTDEVIDVLRESKIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFGERLTKLHEALP 297 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D+A++SD IVGFPGET+++F T + + +++ F +SPR GTP + M +Q+DE++K Sbjct: 298 DLAVTSDVIVGFPGETEEEFMDTYNFIRDHKFSELHVFPFSPRTGTPAARMEDQIDEDIK 357 Query: 388 AE---RLLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 E RL+ L +L ++ S F D + I E + +E+G L G + VV Sbjct: 358 NERVHRLISLNDQLAKEYASRFEDQVLEVIPEEFVHDGSEEEGLLTGYTDNYLKVVFEGP 417 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 IG ++KV+IT G+ V Sbjct: 418 ESLIGQLVKVKITQAGYPHSQGQFV 442 >gi|169824473|ref|YP_001692084.1| Fe-S oxidoreductase [Finegoldia magna ATCC 29328] gi|167831278|dbj|BAG08194.1| Fe-S oxidoreductase [Finegoldia magna ATCC 29328] Length = 430 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 137/392 (34%), Positives = 221/392 (56%), Gaps = 18/392 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M ++F +GYE + + D+ VLNTC + + K + +IR+ Sbjct: 8 TLGCKVNQYETEAMAELFVKKGYEITDDYN-CDVFVLNTCTVTNLSDRKSRQQISKIRS- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 E + ++ V GC +Q +EI VNV++G + + EL E A+ +++ Sbjct: 66 ------ENSNAVIAVVGCYSQVSPDEI-ENIQGVNVILGTKYRKEIVELCELAKSSNKII 118 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + ++ +FE L+I N + +T A++ IQEGC +FC++C++PY RG SR++ Sbjct: 119 NKVENIGKNREFEELTI-----NTEHSMTRAYIKIQEGCSQFCSYCIIPYARGPIRSRNI 173 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +V EA++L DNG EI L G +V ++ GK D + D++ +S I L R+R ++ Sbjct: 174 RDIVLEAKRLADNGFKEIVLTGIHVASY-GKDFDNKDIGLIDVIEDISNIDKLKRIRLSS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 PR + + ++ + HL +QSGSD IL+SMNR++ + Y + I+ IR P Sbjct: 233 LEPRIVDKKFLDRLSQVEQFCDHFHLSLQSGSDSILQSMNRKYDTHLYERTINLIREYYP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + AI++D IVGFPGETD+DF T++ VDKI +++ FKYS R GT S M Q+ VK Sbjct: 293 NAAITTDIIVGFPGETDEDFEQTLNFVDKIKFSKIHVFKYSNRKGTVASKMKNQIPGLVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ER L +K + F D + Q I+VL E Sbjct: 353 KERSQRLIEKSKYYTDKFLDNMLNQPIKVLFE 384 >gi|315658148|ref|ZP_07911020.1| Fe-S oxidoreductase [Staphylococcus lugdunensis M23590] gi|315496477|gb|EFU84800.1| Fe-S oxidoreductase [Staphylococcus lugdunensis M23590] Length = 451 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 145/442 (32%), Positives = 236/442 (53%), Gaps = 25/442 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV+ +AD+ V+NTC + +K + R Sbjct: 11 TLGCKVNHYETEAIWQLFKEANYERVDFETNADVYVINTCTVTNTGDKKSRQVIRRA--- 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V+VVVG Q ++L ++ + ++ + Sbjct: 68 ----IRKNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLSYIDEFQKERQPI 122 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 123 NGVGNIMKNRTYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 178 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A L++ G EI L G + G G D + + LL L I L R+R ++ Sbjct: 179 KVVEQATTLVNAGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLETIDSLERIRISSI 235 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I + ++ +LH+P+QSGSD +LK M R++T + + + ++ PD Sbjct: 236 EASQLTDEVIDVIEKSNKVVRHLHIPLQSGSDSVLKRMRRKYTMEHFSERLSKLHKALPD 295 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGETD++F+ T D + K +++ F YS R+GTP + M Q+DE+VK Sbjct: 296 LAVTSDVIVGFPGETDEEFQETFDFIAKHKFSELHVFPYSSRIGTPAARMDNQIDEDVKN 355 Query: 389 ER---LLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 ER L+ L +L ++ S F D ++EV+ E+ G G L G + V + Sbjct: 356 ERVHKLIALSDQLAKEYASKFED----DVLEVIPEEKGSFHGSLAGYADNYMKVQFDGDE 411 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 IG I+KV+I GE Sbjct: 412 SLIGQIVKVKIVHADYPLNKGE 433 >gi|289550653|ref|YP_003471557.1| MiaB family protein [Staphylococcus lugdunensis HKU09-01] gi|289180185|gb|ADC87430.1| MiaB family protein [Staphylococcus lugdunensis HKU09-01] Length = 448 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 146/442 (33%), Positives = 237/442 (53%), Gaps = 25/442 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEANYERVDFETNADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V+VVVG Q ++L ++ + ++ + Sbjct: 65 ----IRKNPDAVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLSYIDEFQKERQPI 119 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRTYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV++A L++ G EI L G + G G D + + LL L I GL R+R ++ Sbjct: 176 KVVEQATTLVNAGYKEIVLTGIHTG---GYGQDLKNYNLAQLLRDLETIDGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I + ++ +LH+P+QSGSD +LK M R++T + + + ++ D Sbjct: 233 EASQLTDEVIDVIEKSNKVVRHLHIPLQSGSDSVLKRMRRKYTMEHFSERLSKLHKALSD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGETD++F+ T D + K +++ F YS R+GTP + M Q+DE+VK Sbjct: 293 LAVTSDVIVGFPGETDEEFQETFDFIAKHKFSELHVFPYSSRIGTPAARMDNQIDEDVKN 352 Query: 389 ER---LLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 ER L+ L +L ++ S F D ++EV+ E+ G G LVG + V + Sbjct: 353 ERVHKLIALSDQLAKEYASKFED----DVLEVIPEEKGSFHGSLVGYADNYMKVQFDGDE 408 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 IG I+KV+I GE Sbjct: 409 SLIGQIVKVKIVHADYPLNKGE 430 >gi|331007130|ref|ZP_08330347.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC1989] gi|330419065|gb|EGG93514.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC1989] Length = 280 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 116/271 (42%), Positives = 180/271 (66%), Gaps = 15/271 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K++GCQMN YDS RM+D+ S G + +DAD++++NTC IREKA EK++ Sbjct: 21 KKLYIKTHGCQMNEYDSSRMKDLLGESHGMVETDDPEDADVVLINTCSIREKAQEKLFHQ 80 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ ++++ V GCVA EG I +R+P V+++ GPQT +RLPE++E Sbjct: 81 LGRWKRLK----EKNPNVVIGVGGCVASQEGGAIAKRAPFVDLIFGPQTLHRLPEMIETP 136 Query: 144 R-FGKRVVDTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R G VVD + +KF+ L + DG V+AF++I EGC K+C+FCVVPYTRG Sbjct: 137 RDNGVVVVDITFPEIEKFDNLPQPVADG-------VSAFVSIMEGCSKYCSFCVVPYTRG 189 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 E+SR ++ V+ E L GV E+ LLGQNVNA+R + DG ++L+ ++ I+G+ Sbjct: 190 EEVSRPVNDVLVEVAHLAQQGVREVNLLGQNVNAYRAEAEDGHTVDLAELITYVAAIEGI 249 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 R+RYTTSHP + S+ LI+A+ ++ L+ ++ Sbjct: 250 DRIRYTTSHPVEFSESLIQAYAEVPELVSHI 280 >gi|138896073|ref|YP_001126526.1| Fe-S oxidoreductase [Geobacillus thermodenitrificans NG80-2] gi|196248967|ref|ZP_03147667.1| RNA modification enzyme, MiaB family [Geobacillus sp. G11MC16] gi|134267586|gb|ABO67781.1| Fe-S oxidoreductase [Geobacillus thermodenitrificans NG80-2] gi|196211843|gb|EDY06602.1| RNA modification enzyme, MiaB family [Geobacillus sp. G11MC16] Length = 449 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 141/445 (31%), Positives = 246/445 (55%), Gaps = 25/445 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKKAGYERKEFESHADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ D +V V GC AQ E++ P V++V+G Q +++ + +E+ + ++ + Sbjct: 65 ----VRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRHKILDYVEQFQRERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + +++ FE + V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVHNIMKTRVFEEMD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267 +++ +AR+L+ G EI L G + G G D + F+ LL L E + GL R+R ++ Sbjct: 176 EIIRQARQLVAAGYKEIVLTGIHTG---GYGTDLKDYNFAALLRDLDEQVPGLKRIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I D ++ +LH+P+QSGS+ +LK M R++T + + + R+R V P Sbjct: 233 IEASQLTDEVIDVLRRSDKIVRHLHIPLQSGSNTVLKRMRRKYTVEFFAERLARLREVFP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 ++A++SD IVGFPGET+++F T + + + +++ F YS R GTP + M +Q+DE K Sbjct: 293 ELAVTSDVIVGFPGETEEEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPDQIDEETK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSK 443 + RL+ L +L ++ S + GQ++EV+ E+H KE+ G +G + V + Sbjct: 353 HDRVRRLIALSDQLAKEYASRFE---GQVLEVIPEEHDKEEPGMYIGYTDNYLKVRFPAT 409 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 +G+++KV+IT GE V Sbjct: 410 EEMVGELVKVKITKAGYPYNEGEFV 434 >gi|291549892|emb|CBL26154.1| MiaB-like tRNA modifying enzyme [Ruminococcus torques L2-14] Length = 450 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 144/451 (31%), Positives = 243/451 (53%), Gaps = 46/451 (10%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M++M GYE V + ADL V+NTC + A K L R R + Sbjct: 10 GCKVNAYETEAMQEMLEKAGYEIVPFKEGADLYVINTCTVTNIADRKSRQMLHRARKM-- 67 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 D +VV AGC QA+ +EI + +++V+G L E LE +R + Sbjct: 68 -----NPDAVVVAAGCYVQAKEKEI-QVDDCIDIVLGNNKKQNLIEALEEY---ERTHNA 118 Query: 153 DYSVED-------------------------KFERLSIVDGGYNRKRGVTAFLTIQEGCD 187 D +V + ++E L + G + + A++ +Q+GC+ Sbjct: 119 DCNVTENEKNAKNQENDRKAEIKMEEIGKTKEYENLHLTKPGDHTR----AYIKVQDGCN 174 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CT 246 +FCT+C++PY RG SRS+ V+DE R L DNG E+ L G +++++ G+D +K Sbjct: 175 QFCTYCIIPYARGRVRSRSMEDVLDEVRTLADNGYKEVVLTGIHLSSY---GIDFDKEYH 231 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 +L+ ++ EI G+ R+R + P +++ + L + P+ HL +QSG D LK M Sbjct: 232 LLELIRAVHEIDGIERIRLGSLEPGIITEEFAEGIAKLPKMCPHFHLSLQSGCDATLKRM 291 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 NRR+T+ EY + + +R P+ A+++D IVGFPGET+++F+ + D VD I + + FK Sbjct: 292 NRRYTSSEYAEKCELLRKYFPNPALTTDVIVGFPGETEEEFKESYDFVDSIDFYETHIFK 351 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 YS R GT + M +QVDE +KA+R L + +++ ++ + G+ +EVL+E++ + G Sbjct: 352 YSRREGTKAAVMPDQVDEQIKAKRSAQLIELGEKKRAAYEQSFQGKEVEVLVEENLELNG 411 Query: 427 KLV--GRSPWLQSVVLNSKNHNIGDIIKVRI 455 K V G + + L + + I+KV+I Sbjct: 412 KEVQTGHTKEYMKIALETNENLKNSIVKVQI 442 >gi|159481396|ref|XP_001698765.1| hypothetical protein CHLREDRAFT_81764 [Chlamydomonas reinhardtii] gi|158273476|gb|EDO99265.1| predicted protein [Chlamydomonas reinhardtii] Length = 542 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 156/463 (33%), Positives = 239/463 (51%), Gaps = 39/463 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++F+ ++GCQMN+ DS RM + S GY +AD+++ NTC IREKA +KVYS L Sbjct: 98 KKYFIHTFGCQMNMADSERMAGVLESVGYVGSEDASEADVLIYNTCSIREKAEQKVYSAL 157 Query: 85 GR-------IRNLKNSRIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRL 136 G+ + N +K GG G EGE EI + + PQ R+ Sbjct: 158 GKQVRTRGLVPNSTEPIMKAGG-------GQNVGQEGELEIG-----LKLSASPQFANRI 205 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 ELL++A + +VE+ R+ +TA++ + GC++ CT+CVVP Sbjct: 206 NELLDQANDAQVCATEQVAVEEDITTP-------RRESNITAWVNVIYGCNEKCTYCVVP 258 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--------EKCTFS 248 YTRG E SR + E L + G E+TLLGQNV+A+ G+ L G TF+ Sbjct: 259 YTRGAEQSRRPEDIRREMMALGEAGYKEVTLLGQNVDAY-GRDLPGMAADASGRRAWTFT 317 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN- 307 DLL + ++ G+ R+R+ TSHPR +D L++A +L L + H+P Q L + Sbjct: 318 DLLRYVHDVPGIERIRFATSHPRYFTDRLVRACSELPKLCEFFHIPFQVRFVWGLVAAGV 377 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 H + DRI PD +IS D IVGFPGET++ ++ T DLV +IG+ + + Y Sbjct: 378 GAHLPGPISRGPDRIAGYMPDASISGDVIVGFPGETEEQYQRTEDLVREIGFDRVNTAAY 437 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKG 426 SPR TP + QV + +KA+RL L K + E G+ +EVL+E + K Sbjct: 438 SPRPNTPAAEWENQVADLIKADRLNRLNKVVMEVATERAQRFQGRTLEVLVEGPNPKNPA 497 Query: 427 KLVGRSPWLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468 + GR + V + + G ++ VR+ + +++GE+V Sbjct: 498 QAFGRIRHNKLVYFDGDGKTLRGQLVMVRVDECNAFSMFGEMV 540 >gi|304403939|ref|ZP_07385601.1| RNA modification enzyme, MiaB family [Paenibacillus curdlanolyticus YK9] gi|304346917|gb|EFM12749.1| RNA modification enzyme, MiaB family [Paenibacillus curdlanolyticus YK9] Length = 464 Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 144/444 (32%), Positives = 239/444 (53%), Gaps = 21/444 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFLGRIRN 89 + GC++N YD+ M +F + GYE+V+ + AD+ V+NTC + +K Sbjct: 8 TLGCKVNFYDTEAMWQLFKNDGYEQVDFEERTADVYVINTCTVTNTGDKKSRQ------- 60 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + I+ D ++ V GC AQ EI+ P V++V+G Q +L + + + ++ Sbjct: 61 IIRRAIRRNPDAVIAVTGCYAQTSPAEIME-IPGVDLVIGTQDRDKLLGYVGQIQQDRQP 119 Query: 150 VDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 V+ ++ +FE L + D R R AFL IQEGC+ FCTFC++P++RG+ SR Sbjct: 120 VNAVRNIMKTREFEELDVPDFA-ERTR---AFLKIQEGCNNFCTFCIIPWSRGLSRSRDP 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 V+ +A +L++ G EI L G + G G D E SDLL+ L +++GL R+R ++ Sbjct: 176 KSVIAQAEQLVEAGYKEIVLTGIHTG---GYGDDLENYRLSDLLWDLDKVEGLERIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 + D +I + +LH+P+Q+G D +LK M R++T E+ + + + P Sbjct: 233 IEASQIDDKMIDVLNRSSKMCRHLHIPLQAGEDAVLKRMRRKYTTAEFAEKVKMLHRAMP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI++D IVGFPGETD+ F + +IG+++ F YS R GTP + M +QVDE VK Sbjct: 293 GVAITTDVIVGFPGETDEMFEEGYRFMQEIGFSEMHVFPYSKRTGTPAARMEDQVDEEVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + Q+ + VG++++V+ E K G ++G S VV Sbjct: 353 NDRVHKLIDLSEKMQLDYAKQWVGEVVDVIPERDYKGAPGTGLVMGYSGNYLQVVFEGSE 412 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG + +V+IT+ ++ G+LV Sbjct: 413 ALIGQLCRVKITEAGVNECRGQLV 436 >gi|302814840|ref|XP_002989103.1| hypothetical protein SELMODRAFT_235679 [Selaginella moellendorffii] gi|300143204|gb|EFJ09897.1| hypothetical protein SELMODRAFT_235679 [Selaginella moellendorffii] Length = 507 Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 153/470 (32%), Positives = 239/470 (50%), Gaps = 66/470 (14%) Query: 60 DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEG-----GDLLVVVAGCVAQAEG 114 +++D+I++NTC IR+ A K++ L +++K++ K G V V GC+A+ Sbjct: 26 EESDVILINTCAIRDNAENKIWQRLNYFKHIKSNWRKNGTKSSRPPPKVAVLGCMAERLK 85 Query: 115 EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR 174 E+++ +V+VV GP Y LP LL G++ ++T S+E+ + +S V K Sbjct: 86 EKLIEADKMVDVVCGPDAYRDLPRLLSSVEQGQQAINTLLSLEETYADVSPVRIA---KD 142 Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234 VTAF++I GC+ C+FC+VP+TRG E SR L +V E +L + GV E+TLLGQNVN+ Sbjct: 143 SVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPLESIVREVGELWEQGVKEVTLLGQNVNS 202 Query: 235 W----RGKGL-DGEKCT----------------------------------------FSD 249 + G+ +GE+ T F+ Sbjct: 203 YCDLSNTPGIREGEEDTPDEEQRREEEKKKTKKSEAVSDVLSSGFSAIYRTNESGLRFAS 262 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL L+E +R R+T+ HP+D D L+ + + +HLPVQSGS R+L+ M R Sbjct: 263 LLKCLAETYPEMRFRFTSPHPKDFPDDLLLVMREQHNVCNSIHLPVQSGSSRVLERMRRG 322 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 +T Y ++++RIR + P +A+SSDFI GF GET++D T+ +V+ +GY A+ F YS Sbjct: 323 YTREAYLELVERIREIIPGVALSSDFIAGFCGETEEDHLQTLSIVETVGYEMAYMFAYSM 382 Query: 370 RLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGK 427 R TP ++ V E VK RL L + + + +G+ VLIE K + Sbjct: 383 REKTPAHRHDVDDVPEEVKQRRLSELIATFKRSSAARYHSQLGKTQLVLIEAPNKRNPNE 442 Query: 428 LVGRSPWLQSVVLNS---KNHNIGDI--------IKVRITDVKISTLYGE 466 GR Q V + +H GD+ + V+I D ++L GE Sbjct: 443 WGGRCDSGQKVFFSRAPVPDHQSGDLVDTKPGDYVAVKILDTTFASLRGE 492 >gi|187932620|ref|YP_001885098.1| hypothetical protein CLL_A0897 [Clostridium botulinum B str. Eklund 17B] gi|187720773|gb|ACD21994.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund 17B] Length = 434 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 144/442 (32%), Positives = 244/442 (55%), Gaps = 20/442 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M + F +GY + D AD+ V+NTC + +K + + R Sbjct: 7 TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKAR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV- 149 + D ++ V GC +Q EE+ + V+VV+G + + + +AR K + Sbjct: 65 -----RTNSDAIIAVVGCYSQIAPEEVSKIEG-VDVVLGTRNKGDIVYFVNKARDEKAIQ 118 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V + + +K FE L+I + Y K AFL IQ+GC++FCTFC++PY RG S+ Sbjct: 119 VSVNEVLRNKEFEELNIEE--YQDK--TRAFLKIQDGCNRFCTFCLIPYARGATCSKKPE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 +V++E +KL ++G E+ L G + ++ G+D G T LL + +I+G+ R+R + Sbjct: 175 KVLEEVKKLAEHGFKEVILSGIHTASY---GVDLGTGVTLISLLEDIEKIEGIDRVRIGS 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P +D +I ++ L P+ HL +QSGSD LK MNRR+TA EY + + +R Sbjct: 232 IEPAFFTDEVINKIKNMKKLCPHFHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQ 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D++I++D IVGFPGET+++F T + + K+ + FKYSPR GT + M Q+D N+K Sbjct: 292 DVSITTDLIVGFPGETEEEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQIDGNIK 351 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP-WLQSVVLNSKNH 445 +R L + +E +V F VG+ + VLIE+ K G G + ++++ + ++ Sbjct: 352 DKRSKILSELNKENEVDFVKKLVGREMGVLIERECSNKPGIFEGYTKNYVKAEISDASEE 411 Query: 446 NIGDIIKVRITDVKISTLYGEL 467 IG I+ I D + + + G++ Sbjct: 412 MIGKIMNCNIEDYEDNYIIGKI 433 >gi|303233705|ref|ZP_07320359.1| MiaB-like protein [Finegoldia magna BVS033A4] gi|302495139|gb|EFL54891.1| MiaB-like protein [Finegoldia magna BVS033A4] Length = 430 Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 135/392 (34%), Positives = 221/392 (56%), Gaps = 18/392 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M ++F +GYE + + D+ VLNTC + + K + +IR+ Sbjct: 8 TLGCKVNQYETEAMAELFVKKGYEITDDYN-CDVFVLNTCTVTNLSDRKSRQQISKIRS- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 E + ++ V GC +Q +EI VNV++G + + EL E A+ +++ Sbjct: 66 ------ENSNAVIAVVGCYSQVSPDEI-ENIQGVNVILGTKYRKEIVELCELAKSSNKII 118 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + ++ +FE L+I N + +T A++ IQEGC +FC++C++PY RG SR++ Sbjct: 119 NKVENIGKNKEFEELTI-----NTEHSMTRAYIKIQEGCSQFCSYCIIPYARGPIRSRNI 173 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +V EA++L DNG EI L G +V ++ GK D + D++ ++ I + R+R ++ Sbjct: 174 RDIVLEAKRLADNGFKEIVLTGIHVASY-GKDFDNKDIGLIDVIEDIANIDKIKRIRLSS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 PR + + ++ + HL +QSGSD IL+SMNR++ + Y + I+ IR P Sbjct: 233 LEPRIVDKKFLDRLSQVEQFCDHFHLSLQSGSDSILQSMNRKYDTHLYERTINLIREYYP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + AI++D IVGFPGETD+DF T++ VDKI +++ FKYS R GT S M Q+ VK Sbjct: 293 NAAITTDIIVGFPGETDEDFEQTLNFVDKIKFSKIHVFKYSNRKGTVASKMKNQIPGLVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ER L +K + F D + Q I+VL E Sbjct: 353 KERSQRLIEKSKYYTDKFLDNMLNQPIKVLFE 384 >gi|302380512|ref|ZP_07268977.1| MiaB-like protein [Finegoldia magna ACS-171-V-Col3] gi|302311455|gb|EFK93471.1| MiaB-like protein [Finegoldia magna ACS-171-V-Col3] Length = 430 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 135/392 (34%), Positives = 221/392 (56%), Gaps = 18/392 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M ++F +GYE + + D+ VLNTC + + K + +IR+ Sbjct: 8 TLGCKVNQYETEAMAELFVKKGYEITDDYN-CDVFVLNTCTVTNLSDRKSRQQISKIRS- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 E + ++ V GC +Q +EI VNV++G + + EL E A+ +++ Sbjct: 66 ------ENSNAVIAVVGCYSQVSPDEI-ENIQGVNVILGTKYRKEIVELCELAKSSNKII 118 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + ++ +FE L+I N + +T A++ IQEGC +FC++C++PY RG SR++ Sbjct: 119 NKVENIGKNKEFEELTI-----NTEHSMTRAYIKIQEGCSQFCSYCIIPYARGPIRSRNI 173 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +V EA++L DNG EI L G +V ++ GK D + D++ ++ I + R+R ++ Sbjct: 174 RDIVLEAKRLADNGFKEIVLTGIHVASY-GKDFDNKDIGLIDVIEDIANIDKIKRIRLSS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 PR + + ++ + HL +QSGSD IL+SMNR++ + Y + I+ IR P Sbjct: 233 LEPRIVDKKFLDRLSQVEQFCDHFHLSLQSGSDSILQSMNRKYDTHLYERTINLIREYYP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + AI++D IVGFPGETD+DF T++ VDKI +++ FKYS R GT S M Q+ VK Sbjct: 293 NAAITTDIIVGFPGETDEDFEQTLNFVDKIKFSKIHVFKYSNRKGTVASKMKNQIPGLVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ER L +K + F D + Q I+VL E Sbjct: 353 KERSQRLIEKSKYYTDKFLDNMLNQPIKVLFE 384 >gi|312110172|ref|YP_003988488.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1] gi|311215273|gb|ADP73877.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1] Length = 451 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 147/447 (32%), Positives = 247/447 (55%), Gaps = 27/447 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER + AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKKAGYERKDFDSMADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I+ D +V V GC AQ E++ P V++V+G Q ++ E +E+ + +R + Sbjct: 65 ----IRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRGKILEYVEQFQRERRPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + +++ FE + + + +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVHNIMKTRVFEEMDVPEFS-DRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267 +++ +A++L++ G EI L G + G G D + F+ LL L E + GL RLR ++ Sbjct: 176 EIIRQAQQLVNAGYKEIVLTGIHTG---GYGTDMKDYNFAALLRDLDEQVVGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I D ++ +LH+P+QSGS+ +LK M R++T + + + R+R V P Sbjct: 233 IEASQITDEVIDVLRRSDKIVRHLHIPLQSGSNTVLKRMRRKYTTEFFAERLARLREVFP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 ++AI+SD IVGFPGET+++F T + V + +++ F YS R GTP + M QVDE+VK Sbjct: 293 ELAITSDVIVGFPGETEEEFMETYNFVREQRFSELHVFPYSKRTGTPAARMPNQVDEDVK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVLN 441 + RL+ L +L ++ S + GQ++EV+ E+ KE G +G + V Sbjct: 353 HDRVRRLIALSDQLAKEYASQFE---GQVLEVIPEERDKENLESGLYIGYTDNYLKVRFP 409 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +G+I+KV+IT GE V Sbjct: 410 ATEEMVGEIVKVKITKAGYPYNEGEFV 436 >gi|89100455|ref|ZP_01173317.1| hypothetical protein B14911_05476 [Bacillus sp. NRRL B-14911] gi|89084798|gb|EAR63937.1| hypothetical protein B14911_05476 [Bacillus sp. NRRL B-14911] Length = 450 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 141/444 (31%), Positives = 245/444 (55%), Gaps = 21/444 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F +GYER + +D+ ++NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQEGYERTDFESASDVYIINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V++VVG Q ++ E +E+ + ++ + Sbjct: 65 ----IRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRVKMLEYIEQYKQERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVGNIMKNRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL L +++KGL RLR ++ Sbjct: 176 EVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAMLLRDLEAQVKGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ +V++ +LH+P+QSGS+ +LK M R++T + + +DR++ P Sbjct: 233 IEASQITDEVIEVMDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +A++SD IVGFPGET+++F T + + + +++ F YS R GTP + M +Q+DE +K Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQIDEEIK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 E RL+ L +L ++ S + V ++I I K E G VG + VV + Sbjct: 353 NERVHRLISLSDQLAKEYASQFENEVLEVIPEEIYKEDPESGLYVGYTDNYLKVVFPASE 412 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 +G I+KV+I+ G+ V Sbjct: 413 EMVGKIVKVKISKAGYPFNEGQFV 436 >gi|295399226|ref|ZP_06809208.1| RNA modification enzyme, MiaB family [Geobacillus thermoglucosidasius C56-YS93] gi|294978692|gb|EFG54288.1| RNA modification enzyme, MiaB family [Geobacillus thermoglucosidasius C56-YS93] Length = 451 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 147/447 (32%), Positives = 246/447 (55%), Gaps = 27/447 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER + AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKKAGYERKDFDSMADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I+ D +V V GC AQ E++ P V++V+G Q ++ E +E+ + +R + Sbjct: 65 ----IRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRGKILEYVEQFQRERRPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + +++ FE + + + +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVHNIMKTRVFEEMDVPEFS-DRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267 +++ +A++L++ G EI L G + G G D + F+ LL L E + GL RLR ++ Sbjct: 176 EIIRQAQQLVNAGYKEIVLTGIHTG---GYGTDMKDYNFAALLRDLDEQVVGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I D ++ +LH+P+QSGS+ +LK M R++T + + + R+R V P Sbjct: 233 IEASQITDEVIDVLRRSDKIVRHLHIPLQSGSNTVLKRMRRKYTTEFFAERLARLREVFP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 ++AI+SD IVGFPGET+++F T + V + +++ F YS R GTP + M QVDE VK Sbjct: 293 ELAITSDVIVGFPGETEEEFMETYNFVREQRFSELHVFPYSKRTGTPAARMPNQVDEEVK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVLN 441 + RL+ L +L ++ S + GQ++EV+ E+ KE G +G + V Sbjct: 353 HDRVRRLIALSDQLAKEYASQFE---GQVLEVIPEERDKENLESGLYIGYTDNYLKVRFP 409 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +G+I+KV+IT GE V Sbjct: 410 ATEEMVGEIVKVKITKAGYPYNEGEFV 436 >gi|212638682|ref|YP_002315202.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1] gi|212560162|gb|ACJ33217.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1] Length = 467 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 148/447 (33%), Positives = 245/447 (54%), Gaps = 27/447 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER + AD+ V+NTC + +K + R Sbjct: 25 TLGCKVNHYETEAIWQLFKQAGYERKDFESHADVYVINTCTVTNTGDKKSRQVIRRA--- 81 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ D +V V GC AQ E++ P V++V+G Q ++ E +E+ + ++ + Sbjct: 82 ----VRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRGKILEYIEQFKQQRQPI 136 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 137 NGVRNIMKTRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 192 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + F+ LL + E +KGL RLR ++ Sbjct: 193 EVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAMLLRDMDEQVKGLKRLRISS 249 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I D ++ +LH+P+QSGS+ +LK M R++T + + + R+R V P Sbjct: 250 IEASQITDEVIDVLRQSDKIVRHLHIPLQSGSNAVLKRMRRKYTTEFFAERLARLREVFP 309 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D+A++SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QVDE VK Sbjct: 310 DLAVTSDVIVGFPGETEEEFMETYEFIREQRFSELHVFPYSKRTGTPAARMPDQVDEEVK 369 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE---KGKLVGRSPWLQSVVLN 441 E RL+ L +L ++ S + GQ++EV+ E+ KE G VG + V Sbjct: 370 NERVHRLITLSDQLAKEYASKFE---GQVLEVIPEELYKEDPASGLYVGYTDNYLKVKFP 426 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +G ++KV+IT GE V Sbjct: 427 ATEEMVGQLVKVKITKAGYPYNEGEFV 453 >gi|56421035|ref|YP_148353.1| hypothetical protein GK2500 [Geobacillus kaustophilus HTA426] gi|261418482|ref|YP_003252164.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC61] gi|319767557|ref|YP_004133058.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC52] gi|56380877|dbj|BAD76785.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] gi|261374939|gb|ACX77682.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC61] gi|317112423|gb|ADU94915.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC52] Length = 449 Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 142/445 (31%), Positives = 245/445 (55%), Gaps = 25/445 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKKAGYERKEFESRADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ D +V V GC AQ E++ P V++V+G Q +++ + +E+ + ++ + Sbjct: 65 ----VRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRHKILDYIEQFQRERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + +++ FE + + + +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVHNIMKTRVFEEMDVPEFT-DRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267 +++ +AR+L+ G EI L G + G G D + F+ LL L E + GL RLR ++ Sbjct: 176 EIIRQARQLVAAGYKEIVLTGIHTG---GYGTDLKDYNFASLLRDLDEQVPGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I + ++ +LH+P+QSGS+ +LK M R++T Y + + R+R V P Sbjct: 233 IEASQITDEVIDVLKRSEKIVRHLHIPLQSGSNTVLKRMRRKYTVEFYAERLARLREVFP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 ++A++SD IVGFPGET+D+F T + + + +++ F YS R GTP + M Q+DE K Sbjct: 293 ELAVTSDVIVGFPGETEDEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPNQIDEETK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVLNSK 443 + RL+ L +L ++ S + GQ++EV+ E+ KE+ L VG + V + Sbjct: 353 HDRVRRLIALSDQLAKEYASRFE---GQVLEVIPEERDKERPDLYVGYTDNYLKVRFPAT 409 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 +G+++KV+IT GE V Sbjct: 410 EEMVGELVKVKITKAGYPYNEGEFV 434 >gi|297529334|ref|YP_003670609.1| RNA modification enzyme, MiaB family [Geobacillus sp. C56-T3] gi|297252586|gb|ADI26032.1| RNA modification enzyme, MiaB family [Geobacillus sp. C56-T3] Length = 449 Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 142/445 (31%), Positives = 245/445 (55%), Gaps = 25/445 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKKAGYERKEFESRADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ D +V V GC AQ E++ P V++V+G Q +++ + +E+ + ++ + Sbjct: 65 ----VRRNPDAVVCVTGCYAQTSPAEVMA-IPGVDIVIGTQDRHKILDYIEQFQRERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + +++ FE + + + +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVHNIMKTRVFEEMDVPEFT-DRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267 +++ +AR+L+ G EI L G + G G D + F+ LL L E + GL RLR ++ Sbjct: 176 EIIRQARQLVAAGYKEIVLTGIHTG---GYGTDLKDYNFASLLRDLDEQVPGLRRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I + ++ +LH+P+QSGS+ +LK M R++T Y + + R+R V P Sbjct: 233 IEASQITDEVIDVLKRSEKIVRHLHIPLQSGSNTVLKRMRRKYTVEFYAERLARLREVFP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 ++A++SD IVGFPGET+D+F T + + + +++ F YS R GTP + M Q+DE K Sbjct: 293 ELAVTSDVIVGFPGETEDEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPNQIDEETK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVLNSK 443 + RL+ L +L ++ S + GQ++EV+ E+ KE+ L VG + V + Sbjct: 353 HDRVRRLIALSDQLAKEYASRFE---GQVLEVIPEERDKERPDLYVGYTDNYLKVRFPAT 409 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 +G+++KV+IT GE V Sbjct: 410 EEMVGELVKVKITKAGYPYNEGEFV 434 >gi|222151475|ref|YP_002560631.1| hypothetical protein MCCL_1228 [Macrococcus caseolyticus JCSC5402] gi|222120600|dbj|BAH17935.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 448 Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 138/430 (32%), Positives = 238/430 (55%), Gaps = 23/430 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F YERV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKDADYERVDFEQNADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I+ D ++ V GC AQ EI+ + V++VVG Q +++ +E+ R ++ + Sbjct: 65 ----IRRNPDAVICVTGCYAQTSSAEIMDIAG-VDIVVGTQDRHKMLPYIEQYRAERQPI 119 Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + T+ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVTNIMKNRTYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV +A +L+ +G EI L G + G G D + + LL L I GL R+R ++ Sbjct: 176 EVVRQATQLVQSGYQEIVLTGIHTG---GYGEDLKDYNLAQLLRDLETIDGLKRIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I + ++ +LH+P+QSGSD +LK M R++T + + + ++ ++ P Sbjct: 233 EASQLTDEVIDVIDKSNKVVRHLHIPLQSGSDTVLKRMRRKYTMSHFSERLKKLHAIMPG 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+++F+ T D + + G+++ F YS R GTP + M +Q+DE++K Sbjct: 293 LAVTSDVIVGFPGETEEEFQETYDFILQHGFSELHVFPYSMRTGTPAARMTDQIDESIKN 352 Query: 389 E---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 + RL+ L +L ++ S + G ++EV+ E+ LVG + V + H Sbjct: 353 DRVHRLITLSDQLAKEYASRFE---GDVLEVIPEEKASNGNMLVGYTDNYLKVQFEADEH 409 Query: 446 NIGDIIKVRI 455 IG+++KV+I Sbjct: 410 LIGELVKVKI 419 >gi|297588452|ref|ZP_06947095.1| 2-methylthioadenine synthetase [Finegoldia magna ATCC 53516] gi|297573825|gb|EFH92546.1| 2-methylthioadenine synthetase [Finegoldia magna ATCC 53516] Length = 430 Score = 229 bits (583), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 138/390 (35%), Positives = 217/390 (55%), Gaps = 18/390 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M ++F GYE + + D+ VLNTC + + K + +IR+ Sbjct: 10 GCKVNQYETEAMAELFVKNGYE-ITEDYNCDVFVLNTCTVTNLSDRKSRQQISKIRS--- 65 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 E D ++ V GC +Q +EI VNV++G + + EL E A+ ++++ Sbjct: 66 ----ENSDAIIAVVGCYSQVSPDEI-ENIEGVNVILGTKYRKEIVELCELAQSSNKIINK 120 Query: 153 DYSV--EDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 S+ +FE L+I N + +T +++ IQEGC +FC++C++PY RG SR++ Sbjct: 121 VESIGKNREFEELTI-----NTEHSMTRSYIKIQEGCSQFCSYCIIPYARGPIRSRNIRD 175 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 +V EA++L DNG EI L G +V ++ GK LD D++ + +I + R+R ++ Sbjct: 176 IVLEAKRLSDNGFKEIVLTGIHVASY-GKDLDNNDIGLIDVIEDIGQIDKIKRIRLSSLE 234 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 PR + + ++ + HL +QSGSD IL+SMNR++ Y + I+ IR P+ Sbjct: 235 PRIVDKQFLDRLSKVEQFCDHFHLSLQSGSDSILESMNRKYDTDLYEKTINLIREYYPNA 294 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 AI++D IVGFPGETD+DF T+ VDKI +++ FKYS R GT S M QV VK E Sbjct: 295 AITTDIIVGFPGETDEDFEQTLSFVDKIQFSKIHVFKYSNRKGTVASKMKNQVSGVVKKE 354 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 R L +K + F D + Q I+VL E Sbjct: 355 RSKLLIEKSKYYTDKFLDNMLNQPIKVLFE 384 >gi|56963428|ref|YP_175159.1| 2-methylthioadenine synthetase [Bacillus clausii KSM-K16] gi|56909671|dbj|BAD64198.1| 2-methylthioadenine synthetase [Bacillus clausii KSM-K16] Length = 445 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 141/443 (31%), Positives = 242/443 (54%), Gaps = 20/443 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F +GYE+V AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQEGYEKVEFEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ E++ P V++VVG Q ++ +++ + ++ + Sbjct: 65 ----IRKNPDAVICVTGCYAQTSPAEVMA-IPGVDIVVGTQDRSKMLGYIDQYKKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVGNIMKSRVYEELD-VPSFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VV +A++L+ G EI L G + G G D + + + LL L +++GL RLR ++ Sbjct: 176 EVVRQAQQLVHAGYKEIVLTGIHTG---GYGEDLKDYSLARLLEDLEKVEGLKRLRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I G ++ ++H+P+QSGSD +LK M R++T Y + I++++ P Sbjct: 233 EASQLTDEVIAVIGKSSKVVRHMHIPLQSGSDTVLKRMRRKYTMAAYEERIEKLKQALPR 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +AI+SD IVGFPGET+++F+ T D + K +++ F YS R GTP + M +Q+DE +K Sbjct: 293 LAITSDVIVGFPGETEEEFQETYDFIAKHKFSELHVFPYSMRTGTPAARMTDQIDEAIKN 352 Query: 389 E---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 E RL+ L +L ++ S + V ++I +K E G VG + V L + Sbjct: 353 ERVHRLIELSNQLAKEYASSFENEVLEVIPEERDKDNPESGLFVGYTDNYLKVKLEADET 412 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 IG +++V+I + GE V Sbjct: 413 MIGKLVRVKIKEAGYPYNRGEFV 435 >gi|121534805|ref|ZP_01666625.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans Nor1] gi|121306600|gb|EAX47522.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans Nor1] Length = 432 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 143/402 (35%), Positives = 225/402 (55%), Gaps = 23/402 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC---HIREKAAEK 79 +P+ F + GC++N +++ +E +F +GY V+ + AD+ V+NTC H+ EK + + Sbjct: 1 MPRAAFT-TLGCKVNQFETEVIEGLFKQRGYTIVSFDEPADVYVINTCSVTHLGEKKSRQ 59 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 + R+ + ++V GC AQ +++ P V+V+VG Q R+ +L Sbjct: 60 LIRRAARVNP----------EAVIVATGCYAQVSPDKVAA-IPGVDVIVGTQDRGRIVDL 108 Query: 140 LERARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 +E AR + V+ TD ++FE + I D R R AFL IQEGC FCT+C++PY Sbjct: 109 VEEARRTRGQVNAVTDIMEAEQFEDIPIFDAP-GRTR---AFLKIQEGCTNFCTYCIIPY 164 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG SRSL V EA KLI G EI L G ++ A+ G+ + G+ +D + ++ + Sbjct: 165 ARGPLRSRSLDSVKREAEKLIATGFKEIVLTGIHLGAY-GRDM-GDGLELADAVETVLSV 222 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 GLVRLR ++ ++SD L+ L P+LHLP+Q+G D +L MNR +T EY + Sbjct: 223 AGLVRLRLSSLESVEVSDRLVALMRRDAKLCPHLHLPLQAGDDHVLSQMNRHYTTEEYSR 282 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++ IR PD+A+++D IVGFPGET F ++ V+++ +A+ F YS R GTP + Sbjct: 283 LVGDIRRRVPDLAVTTDVIVGFPGETPTMFANSLAFVERMAFAKVHIFPYSRRSGTPAAT 342 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 QV E K R+ +Q+ + +F A VG+ +EVL E Sbjct: 343 YPNQVPEEEKKRRVREMQRVAEKGAAAFLAAFVGREMEVLFE 384 >gi|289423896|ref|ZP_06425689.1| conserved hypothetical protein [Peptostreptococcus anaerobius 653-L] gi|289155673|gb|EFD04345.1| conserved hypothetical protein [Peptostreptococcus anaerobius 653-L] Length = 442 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 145/441 (32%), Positives = 243/441 (55%), Gaps = 24/441 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M +MF +GY V S + AD+ V+NTC + + K ++ R++ Sbjct: 8 TLGCKVNQYETEAMLEMFEKKGYTNVGSEEYADVYVINTCTVTHMSDRKSRQYIRRVK-- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K+ ++ V GC +Q EEIL VN+V+G + + +E ++ Sbjct: 66 -----KKNPKSIIAVVGCYSQVSPEEILEIED-VNLVMGTNDRRTIVDRIEELDSNSKLS 119 Query: 151 DTDYSVE-DKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 D ++ +FE + I + G R AF+ IQ+GCD++CT+C++PY RG SR++ Sbjct: 120 TVDDIMKVREFESIEISQNNGKTR-----AFIKIQDGCDRYCTYCIIPYARGRIRSRNID 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++ +E L +NG E+ L G +V ++ GK L E D++ ++++I G+ R+R ++ Sbjct: 175 EIREEIITLANNGYKEVVLTGIHVASY-GKDL-KEDIGILDVIKAVNDIDGIERIRLSSV 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P +D I +D L+P+ HL +QSG+D LK MNRR+TA EY++ +D +R D Sbjct: 233 EPVLFTDEFIDEICKIDKLVPHFHLSLQSGTDSTLKRMNRRYTAAEYKRTVDTLRDRIKD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK- 387 + +++D IVGFPGET++DF T+ + +I FKYSPR GTP ++M +QVD K Sbjct: 293 VMLTTDVIVGFPGETNEDFSETLRFLKEIKLMHMHVFKYSPRKGTPAASMKDQVDPQAKQ 352 Query: 388 --AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ++ LL L KK ++ + +G+ + VL E+ KE G G S + + S Sbjct: 353 FRSDALLNLSKKNFKENT---EKYIGRPLNVLFEEVDKE-GYYEGLSDNYIRIKVKSDKD 408 Query: 446 NIGDIIKVRITDVKISTLYGE 466 G I++ +I D++ GE Sbjct: 409 IRGQILEAKIVDIRDDYCIGE 429 >gi|258645469|ref|ZP_05732938.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM 15470] gi|260402822|gb|EEW96369.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM 15470] Length = 447 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 135/391 (34%), Positives = 216/391 (55%), Gaps = 17/391 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N YDS M +F GY+ ++AD+ V+NTC + K + RIR Sbjct: 17 TLGCKVNQYDSDAMRSLFIRNGYKVAKENENADVYVINTCSVTSIGDRKSRQMVRRIR-- 74 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +E ++ AGC AQ ++ + V+V+VG Q + E +E A K+ + Sbjct: 75 -----REHPGAVIAAAGCYAQL-APDVFVQMGDVDVIVGIQNRSHIVEYVEEAAAEKKTL 128 Query: 151 DT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + D FE LS+ G + R AF+ IQEGCD +CTFC++P+ RG SR S Sbjct: 129 NAVGDIMAVTDFENLSVDAEGEVKTR---AFIKIQEGCDNYCTFCIIPFARGKLKSRRQS 185 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTT 267 V+E R+L++ G E+ L G ++ + GK L DG + S L+ L I L+R+R + Sbjct: 186 DAVEEIRRLVEKGYREVVLTGIHLGNY-GKDLHDG--TSLSTLVTELVRIPDLLRIRLGS 242 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++SD LI+ + + P+LHLP+Q+GSD ILK MNR + EY+++I +R P Sbjct: 243 IESVELSDELIRIIREEPKVCPHLHLPIQAGSDDILKRMNRHYRLAEYKELIRNLRKEIP 302 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +A+++D IVGFPGET+++FR T+D + ++ ++ F YSPR GTP + QV +K Sbjct: 303 GLALTTDLIVGFPGETEENFRETLDTLQELQFSAIHVFPYSPRKGTPAAAYPNQVKPEIK 362 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 ER +Q +E ++ + +++ VL+ Sbjct: 363 KERAARVQALGKELAGAYRNQFFHKMVRVLV 393 >gi|241560240|ref|XP_002400838.1| CDK5 regulatory subunit-associated protein, putative [Ixodes scapularis] gi|215499787|gb|EEC09281.1| CDK5 regulatory subunit-associated protein, putative [Ixodes scapularis] Length = 547 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 148/480 (30%), Positives = 248/480 (51%), Gaps = 45/480 (9%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 + ++YGCQMNV D+ + S G+ + ++ AD++++ TC IRE A K++S + ++ Sbjct: 48 YFETYGCQMNVNDTEVAWSVLKSAGFTKTEDVNVADVVLIMTCAIREGAESKIWSRINQL 107 Query: 88 RNLKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + LK +R + G + + + GC+A+ E+++ R V++V GP +Y LP LL A G Sbjct: 108 KALKKARRRSSRGPMQIGILGCMAERLKEKLVEREKEVDIVAGPDSYRDLPRLLRVATSG 167 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + V+ S+++ + + V N K +A+++I GC+ CT+C+VP+TRG E SR Sbjct: 168 QVGVNVLLSLDETYADVVPVRLTENAK---SAYVSIMRGCNNMCTYCIVPFTRGRERSRP 224 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---------------------- 244 ++ ++DE R L + GV E+ LLGQNVN++R + + Sbjct: 225 VTSILDEVRALSEQGVKEVILLGQNVNSYRDTSAESQALIARPAPGDVLLSRGFRTVYKT 284 Query: 245 ----CTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 F DLL +S++ +R+R+T ++ R +++ D + +HLP QSG+ Sbjct: 285 QLGGVRFVDLLDRVSQVDPEMRIRFTCRANARTYGGRVLEVIQDRHNICKQIHLPAQSGN 344 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 R+L++M R +T Y ++ IR+ PD+A++SDFI GF GET++ R T+ LV+ + Y Sbjct: 345 SRVLETMRRGYTREAYLDLVAHIRTFLPDVALTSDFICGFCGETEEAHRDTLSLVEAVQY 404 Query: 360 AQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 A+ F YS R T LE V VK R+ + R + +D VG + VL+ Sbjct: 405 DMAYVFPYSLREKTHAHRRLEDDVPLEVKKRRVAEVLAVFRRRVKQLHDKQVGSLQLVLV 464 Query: 419 EKHGKEKGK-LVGRSP------WLQSVVLNSKNHNI------GDIIKVRITDVKISTLYG 465 E + L GR+ + QS++ S + GD + V I D L G Sbjct: 465 EGVSRRSAADLAGRNDNNTKVIFPQSLIPESSGSTVRREVQPGDYVVVEINDCTSQVLKG 524 >gi|219116801|ref|XP_002179195.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409086|gb|EEC49018.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 516 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 148/453 (32%), Positives = 242/453 (53%), Gaps = 59/453 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P +F ++++GCQMNV DS + + +G+ DAD+++ NTC IRE A +KV+ Sbjct: 3 PFKFHLRTFGCQMNVNDSDIVRALLLERGFTETLDETDADVLLTNTCAIREGAEQKVWHR 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140 L +R SR +V V GC+A+ ++ R + ++VVGP Y LP L+ Sbjct: 63 LRELRGKFKSRK------VVGVLGCMAERLQTDLFRDG-LADLVVGPDAYRDLPRLMRDL 115 Query: 141 ------ERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFC 190 + A G+ + + S+++ + ++ V R+ G V+AF++IQ GC C Sbjct: 116 LREPDDDDAELGRVNQAFNVQLSLDETYADVTPV-----RRHGNSVSAFVSIQRGCANRC 170 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---------- 240 +FC+VP+TRG E SR + VV E ++L + GV E+TLLGQNVN++ Sbjct: 171 SFCIVPFTRGQERSRPFASVVGEIQQLYEQGVKEVTLLGQNVNSYHDTSETALSVRPDSG 230 Query: 241 -----DGEKCT---------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286 DG + F+DL+ ++S+I +R+R+T+ HP+D L+ + Sbjct: 231 YRMSNDGFRSRIRRHDGGYYFADLVAAVSDISSELRVRFTSPHPKDYPPPLLTLMAERPN 290 Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 + +LH+P QSGS +L+ M R ++ Y +++D + + PD+AISSDFI GF E++++ Sbjct: 291 VCNHLHMPAQSGSTSMLQRMKRGYSREAYLELMDTVHEIIPDVAISSDFIAGFCDESEEE 350 Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLL----CLQKKLREQ 401 T+ L++++ Y QAF F YS R T M + V E+VK RL+ Q+ ++E+ Sbjct: 351 HLDTLSLMERVRYDQAFMFAYSMRGKTHAHRTMQDNVPEDVKKRRLIEIIDTFQRHVQEK 410 Query: 402 QVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 S VG++ VL+E G+ K G W Sbjct: 411 NESLE---VGRLRLVLVE--GESKRSHPGARAW 438 >gi|153853286|ref|ZP_01994695.1| hypothetical protein DORLON_00681 [Dorea longicatena DSM 13814] gi|149754072|gb|EDM64003.1| hypothetical protein DORLON_00681 [Dorea longicatena DSM 13814] Length = 440 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 152/456 (33%), Positives = 242/456 (53%), Gaps = 33/456 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLG 85 FFV S GC N+ DS M + ++GY+ V+ AD++V+NTC I + E + + L Sbjct: 4 FFV-SLGCDKNLVDSEVMLGLLDAKGYQIVDDETLADVMVINTCCFIHDAKEESIQTILD 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R + R+K +VV GC+AQ +EI+ P V+VV+G +Y ++ E +E A Sbjct: 63 MARYKEEGRLK-----ALVVTGCLAQRYKQEIIDEIPEVDVVLGTTSYDKIVEAVEEALE 117 Query: 146 GK---RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 GK + D + + +RL G Y A+L I EGCDK CT+C++P RG Sbjct: 118 GKSEVELADINALPLPETKRLVTTGGHY-------AYLKIAEGCDKHCTYCIIPKVRGNY 170 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + +++ EA++L D GV E+ L+ Q + G+ + GEK + LL L +IKG+ Sbjct: 171 RSVPMERLIKEAQELADQGVKELILVAQETTVY-GQDIYGEK-SLHKLLKELCQIKGIRW 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R +P ++ D LI+ + + YL LP+Q SD ILK M RR + + I ++ Sbjct: 229 IRLLYCYPEEIDDNLIQVMKEEPKICHYLDLPIQHASDAILKRMGRRTSKQQLIDTITKL 288 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PDIA+ + I GFPGET + M+ VD++ + + F YSP TP + M +Q+ Sbjct: 289 RKEIPDIALRTTLITGFPGETQEQHEEVMEFVDEMEFERLGVFTYSPEEDTPAATMPDQI 348 Query: 383 DENVKAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PW 434 DE VK +R Q + E Q++ F+ A +G+ + V+IE ++ VGR+ P Sbjct: 349 DEEVKEDR----QADIMELQQEIVFDQAEDMIGKEVLVMIEGKVADENAYVGRTYRDAPN 404 Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + ++ + + + GD KV++T L GEL+ Sbjct: 405 VDGLIFVNTDEELMTGDFAKVKVTGAAEYDLIGELI 440 >gi|311031621|ref|ZP_07709711.1| ribosomal protein S12 methylthiotransferase [Bacillus sp. m3-13] Length = 454 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 142/444 (31%), Positives = 242/444 (54%), Gaps = 21/444 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F + YER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKANNYERTEFEGTADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V+VVVG Q ++ + +E+ + ++ + Sbjct: 65 ----IRKNPDAVICVTGCYAQTSPAEIMA-IPGVDVVVGTQDRVKMLDYIEQFKQERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKARVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQ 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267 +VV +A++L+D G EI L G + G G D + F+ LL L E ++GL R+R ++ Sbjct: 176 EVVTQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAMLLRELDEKVEGLKRIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ + D ++ +LH+P+QS S+ +LK M R++T + + +DR++ P Sbjct: 233 IEASQITDEVIEVLNNSDKIVRHLHIPIQSASNTVLKRMRRKYTMEFFAERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QVDE +K Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMTDQVDEEMK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 E RL+ L +L ++ S + V ++I I K ++G VG + VV + Sbjct: 353 NERVHRLIALSDQLAKEYASTFEEEVLEVIPEEIYKEAPDQGLYVGYTDNYLKVVFPATE 412 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 +G ++KV+I G+ V Sbjct: 413 EMVGKLVKVKIAKAGYPYNEGQFV 436 >gi|15613914|ref|NP_242217.1| hypothetical protein BH1351 [Bacillus halodurans C-125] gi|10173967|dbj|BAB05070.1| BH1351 [Bacillus halodurans C-125] Length = 448 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 143/447 (31%), Positives = 249/447 (55%), Gaps = 26/447 (5%) Query: 30 KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 ++ GC++N Y++ + +F +GYE+V+ AD+ V+NTC + +K + R Sbjct: 7 QTLGCKVNHYETEAIWQLFKGEGYEKVDFEQMADVYVINTCTVTNTGDKKSRQVIRRA-- 64 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 I++ D ++ V GC AQ E++ P V++VVG Q ++ E +E+ + ++ Sbjct: 65 -----IRKNPDAVICVTGCYAQTSPAEVMA-IPGVDIVVGTQDRKKMLEYIEQYKKERQP 118 Query: 150 VDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 ++ ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 119 INGVGNIMKSRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDP 174 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +V+ +A +L+ G EI L G + G G D + + + LL L ++ GL R+R ++ Sbjct: 175 KEVIKQAEQLVQAGYKEIVLTGIHTG---GYGEDLKDYSLARLLEDLEQVNGLKRIRISS 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ ++ +LH+P+QSGSD +LK M R++T + + ++R+R P Sbjct: 232 IEASQLTDEVIEVIDRSTKVVRHLHIPLQSGSDTVLKRMRRKYTMAFFAERLERLREALP 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +A++SD IVGFPGET+ +F+ T D + K +++ F YS R GTP + M +QV+E+VK Sbjct: 292 GLAVTSDVIVGFPGETEAEFQETYDFIAKHKFSELHVFPYSKRTGTPAARMEDQVNEDVK 351 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVLN 441 E RL+ L +L ++ S + G+++E++ E+ KE+ G VG + V + Sbjct: 352 NERVHRLIQLSDQLAKEYASQFE---GEVLEMIPEERDKEEPNSGLYVGYTDNYLKVKIP 408 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG ++KV+IT GE V Sbjct: 409 ATDEMIGKLVKVKITKAGYPYNEGEFV 435 >gi|325183820|emb|CCA18278.1| CDK5 regulatory subunitassociated protein 1 putativ [Albugo laibachii Nc14] gi|325183990|emb|CCA18448.1| CDK5 regulatory subunitassociated protein 1 putativ [Albugo laibachii Nc14] Length = 639 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 133/395 (33%), Positives = 219/395 (55%), Gaps = 31/395 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F++++YGCQMN DS + + GY+ + +DAD+I+LNTC IRE A K+++ L Sbjct: 95 KNFYIETYGCQMNTADSEIVHAILVKNGYQLAKNPEDADVILLNTCAIRENAESKIWNRL 154 Query: 85 GRIRNLKNS--RIKEGGDLL--VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 + R +K R K + L V V GC+A+ ++L +V++VVGP Y LP LL Sbjct: 155 EQWRQIKVKLLRHKSTRNHLPTVGVLGCMAERLKTKLLECDKMVDLVVGPDAYRDLPNLL 214 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + R G+ V+ S+++ + + V + +AF++I GC+ C++C+VP+TRG Sbjct: 215 QVVRGGQSAVNVQLSLDETYAGIVPVRSDPSNP---SAFVSIMRGCNNMCSYCIVPFTRG 271 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-------------GLDGEKCTF 247 E S L ++ E + L D GV EI LLGQNVN++ K +G K F Sbjct: 272 RERSCELESIISEVKSLRDQGVKEIMLLGQNVNSYHDKQSQQAQEKGRAYVSANGFKNMF 331 Query: 248 S----------DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297 D+L +S++ +R+R+T+ HP+D D ++ + + +H+P QS Sbjct: 332 KARNATGFRFVDVLDHVSQVDSEMRIRFTSPHPKDFPDDVLDLIQERHNICNSVHMPAQS 391 Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 GS +L+ M R ++ Y + + +R+ P ++ISSDFI GF GET+++ + T+ L+ ++ Sbjct: 392 GSTTVLERMRRGYSREAYLALAENMRTRIPGVSISSDFITGFCGETEEEHQDTLTLIQRV 451 Query: 358 GYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERL 391 + QAF F YS R T ++ +E V + VK RL Sbjct: 452 CFDQAFMFTYSLRAKTHAAHRMEDNVPQEVKLRRL 486 >gi|224541752|ref|ZP_03682291.1| hypothetical protein CATMIT_00924 [Catenibacterium mitsuokai DSM 15897] gi|224525356|gb|EEF94461.1| hypothetical protein CATMIT_00924 [Catenibacterium mitsuokai DSM 15897] Length = 435 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 148/430 (34%), Positives = 238/430 (55%), Gaps = 20/430 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S M ++F +GYE ++ AD+ V+NTC + K R + Sbjct: 8 TLGCKVNSYESEAMLEIFKKRGYETIDFESPADVYVINTCTVTNTGDSKS-------RQM 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRV 149 + + ++ V GC +Q EEI V+VV+G Q + + +E + K++ Sbjct: 61 IRKAHRTNPEAVICVVGCYSQVASEEITGIEG-VSVVLGTQHRASIVDFVEEYKSTHKQI 119 Query: 150 VDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V + ++ +FE LSI N+ R AFL IQ+GC+ FCT+C++PY RG SR Sbjct: 120 VKIENVMKVSRFEDLSI-HAFENKTR---AFLKIQDGCNNFCTYCIIPYARGGVRSRPKE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVRLRYTT 267 V+ +A++L+D G EI L G + G G+D E +F DLL L+ +IKGL RLR ++ Sbjct: 176 DVLRQAQELVDRGFVEIVLTGIHTA---GYGVDLENYSFYDLLVDLTTKIKGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ G +++ +LH+P+QSG+D IL+ M R + E+ + ++ P Sbjct: 233 IEMSQVSDEIIELIGKSPIIVDHLHIPIQSGTDSILRRMARHYNTAEFEKKYFELKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 I+I++D IVGFPGET++DF T + + K+ + Q F YS R GTP M QV +VK Sbjct: 293 GISITTDVIVGFPGETEEDFVDTYNWIKKLHFNQLHVFPYSRRRGTPADRMPSQVPGDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447 ER+ L K E + F + + + +EVLIE+ ++ G +VG + V++ + Sbjct: 353 KERVRRLLKLSDELKTEFALSEMNKELEVLIEE--EKDGYMVGHASNYLKVLVADTSLKE 410 Query: 448 GDIIKVRITD 457 G I KV++TD Sbjct: 411 GHIYKVKVTD 420 >gi|91088221|ref|XP_973511.1| PREDICTED: similar to CG6345 CG6345-PA [Tribolium castaneum] gi|270011824|gb|EFA08272.1| hypothetical protein TcasGA2_TC005903 [Tribolium castaneum] Length = 610 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 143/476 (30%), Positives = 241/476 (50%), Gaps = 38/476 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + YGCQMNV D+ + + Y + +++ +AD++++ TC IRE A K++ L Sbjct: 111 RKVYFDVYGCQMNVNDTEIIWSILQKHNYLKTSNLLEADVVLIVTCAIREGAESKIWGRL 170 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +R + S+ V V GC+A+ ++L ++ V++V GP Y LP LL Sbjct: 171 EYLRGINKSKATFSSRFKVGVLGCMAERLKHKVLEKNKTVDLVAGPDAYRDLPRLLALTE 230 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++ V+ S ++ + + V N V+AF++I GCD CT+C+VP+TRG E S Sbjct: 231 NDQKSVNVLLSFDETYADIMPVRLNEN---SVSAFVSIMRGCDNMCTYCIVPFTRGKERS 287 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT------------------ 246 R + ++ E L GV E+TLLGQNVN++R G+ Sbjct: 288 RPVDSILREIELLSQQGVKEVTLLGQNVNSYRDLSNSGDIFINNQTNLAKGFKTVYKSKI 347 Query: 247 ----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 F+ LL ++++ +R+R+T+ HP+D D ++ + LH+P QSG+ + Sbjct: 348 GGRRFAHLLEKVADVNPEMRIRFTSPHPKDFPDEVLHVIKSRPNICKNLHMPAQSGNTNV 407 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L+ M R +T Y +++D IR + P++++SSDFI GF GET+++F T+ L++ + Y A Sbjct: 408 LERMRRGYTREAYIELVDHIRYLLPEVSLSSDFICGFCGETEEEFEDTISLMEMVQYNNA 467 Query: 363 FSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 + F YS R T + V VK +RL + + R N A +G++ +LIE Sbjct: 468 YLFPYSMREKTAAHRRYTDDVPAEVKQKRLERMIQTFRFYAEKLNRAQIGRLQLILIEGF 527 Query: 422 G-KEKGKLVGRSPWLQSVVL-----------NSKNHNIGDIIKVRITDVKISTLYG 465 + + +L GR+ VV+ +SK GD + V+I L G Sbjct: 528 SRRSRNQLAGRNDQNIKVVIPAGEVPQKDGRSSKELGPGDYVVVQINAANSQILKG 583 >gi|157693043|ref|YP_001487505.1| 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032] gi|157681801|gb|ABV62945.1| 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032] Length = 453 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 150/448 (33%), Positives = 243/448 (54%), Gaps = 28/448 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 9 TLGCKVNHYETEAIWQLFKEAGYERKEYESKADVYVINTCTVTNTGDKKSRQVIRRA--- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I+ D ++ V GC AQ EI+ P V++VVG Q ++L +E R ++ + Sbjct: 66 ----IRHNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRHKLLGYIEEFRRERQPI 120 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ FE L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 121 NGVGNIMKARVFEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 176 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267 +V+++A++L+D G EI L G + G G D + F+ LL L E + GL R+R ++ Sbjct: 177 EVINQAQQLVDAGYKEIVLTGIHTG---GYGEDLKDYNFAKLLKELDERVNGLKRIRISS 233 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ D ++ +LH+P+QSGS+ +LK M R++T + + + +++ P Sbjct: 234 IEASQITDEVIEVLDQSDKIVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLTKLKKALP 293 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +A++SD IVGFPGET+++F T + V +++ F YS R GTP + M +QVDENVK Sbjct: 294 GLAVTSDVIVGFPGETEEEFLETYNFVKDHQFSELHVFPYSKRTGTPAARMEDQVDENVK 353 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GK---LVGRSPWLQSVVL 440 E RL+ L +L ++ S A G ++E++ E+ KE+ GK VG + VV Sbjct: 354 NERVHRLIALSDQLAKEYAS---AYEGDVLEIIPEESFKEQEGKHNLYVGYTDNYMKVVF 410 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++KV+IT G+ V Sbjct: 411 EGTEDMIGRLVKVKITKAGYPYNEGQFV 438 >gi|168187871|ref|ZP_02622506.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] gi|169294276|gb|EDS76409.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] Length = 433 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 141/441 (31%), Positives = 245/441 (55%), Gaps = 17/441 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N+Y+S M + F GYE V+ + AD+ V+NTC + + +K L R + Sbjct: 7 TLGCRVNMYESEAMAEKFIKNGYEVVDFDEMADVYVVNTCTVTNMSDKKSRQMLSRAK-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-GKRV 149 ++ + ++ GC Q E++ + V+V++G + + + RA+ K + Sbjct: 65 -----RKNPNSVIAAVGCYTQIAPEKV-KEIGDVDVILGTRNKGDIVYWVNRAKEEDKTI 118 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V+ + +++K FE L+I + Y K AFL IQ+GC+ FC++C++P+ RG S++ Sbjct: 119 VEVNDVLKNKKFEELNIEE--YQDK--TRAFLKIQDGCNNFCSYCLIPFARGAVCSKNPK 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V+DE +KL +G E+ L G +++++ G L+G+ ++L + +I G+ R+R + Sbjct: 175 IVIDEVKKLAAHGFKEVILSGIDISSY-GVDLEGD-WNLLNILKEIDKIDGITRVRIGSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ I+ G+L L P+ HL +QSG + LK MNR++T E+ +I+ +R D Sbjct: 233 GPEFFNEDRIRQIGNLKKLCPHFHLSLQSGCNETLKRMNRKYTIEEFENVINLLRKYIKD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I+I++D IVGFPGETDD+F+ T + + +I ++ FKYSPR GT M +QV+ N+K Sbjct: 293 ISITTDIIVGFPGETDDEFKKTYEYLKRIKLSKMHIFKYSPRTGTRAEKMEKQVNGNIKE 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNI 447 ER L K + F D +G+ +EVL E+ K G G +P V+ SK Sbjct: 353 ERSKALIKLNEINEKKFIDKFIGENMEVLYEQQCNNKEGYYEGYTPNYIKVISESKEDFS 412 Query: 448 GDIIKVRITDVKISTLYGELV 468 G I+ ++ + K G+++ Sbjct: 413 GKIVNTKLIETKEEYAIGKII 433 >gi|328713992|ref|XP_003245232.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like [Acyrthosiphon pisum] Length = 580 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 149/476 (31%), Positives = 250/476 (52%), Gaps = 39/476 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++ YGCQMNV D+ + + ++GY + NS+ +AD+I+L TC IR+ A K+++ + Sbjct: 86 RKVYIEVYGCQMNVNDAEIVWSILQNEGYIKTNSIYEADVILLVTCAIRDSAENKIWTRI 145 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP-IVNVVVGPQTYYRLPELLERA 143 ++R++K R K L + + GC+A+ E+++ S +++V GP +Y LP LL + Sbjct: 146 KQLRSVKRWRGKLDP-LKIGILGCMAERLKEKLVSDSKGAIDLVAGPDSYRDLPRLLAKT 204 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G++ ++ S ++ + + V + VTA+++I GCD CT+C+VP+TRG E Sbjct: 205 EAGQKAINVLLSFDETYAEIKPVKLNDD---NVTAYVSIMRGCDNMCTYCIVPFTRGRER 261 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG------------------KGLDGEK- 244 SR + ++DE + L + G E+TLLGQNVN++R K + EK Sbjct: 262 SRPVESILDEIKYLSEKGFKEVTLLGQNVNSYRDLSTSSFFMPSTNTLASGFKTVYKEKK 321 Query: 245 --CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 F++LL +S++ +R+R+T+ HP+D D ++ + + LHLP Q GS + Sbjct: 322 GGVRFAELLNRVSDVDPEMRIRFTSPHPKDFPDEVLDIILEKPNVCKNLHLPAQCGSTEV 381 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L+ M R +T Y + IR P + SSDFI GF GETD++F T+ L++ + Y A Sbjct: 382 LEKMRRGYTRESYLSLAQHIRDRLPGVTYSSDFIAGFCGETDEEFEDTISLMETVKYHNA 441 Query: 363 FSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 F F YS R T + V +K ER+ + R N V +L+E Sbjct: 442 FLFAYSMREKTTAYRRYKDDVPHEIKVERVKKMFNVFRRDAEILNKQFVNTEQLMLVEGE 501 Query: 422 GKE-KGKLVGRSPW-LQSVVLNSK--------NHNI--GDIIKVRITDVKISTLYG 465 + L GR+ ++ ++ N+K N +I GD I V+I + L G Sbjct: 502 SRRGPSDLCGRTDGNIKVIIPNTKLPLEESSFNQDIKPGDYITVKIIESNSQVLKG 557 >gi|302391395|ref|YP_003827215.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501] gi|302203472|gb|ADL12150.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501] Length = 436 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 147/447 (32%), Positives = 244/447 (54%), Gaps = 17/447 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + GC++N YD+ M ++F + YE V+ D+AD+ V+NTC + + A K + Sbjct: 2 ERVAFYTLGCKVNQYDTEAMINLFTAADYELVDFSDEADVYVINTCTVTHQGARKSRKMV 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R N +N + +V V GC Q EIL V+++VG + R+ +L+E+A+ Sbjct: 62 RRA-NRRNPQA------IVAVVGCYPQVSPAEILEIDG-VDLIVGTEGQSRIVDLVEQAK 113 Query: 145 FGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 ++ D S + FE + + D R R A L +Q+GCD FC +C++PYTRG Sbjct: 114 RADESLNFVRDISEAEDFEEIPL-DKFEERTR---ASLKVQDGCDNFCAYCIIPYTRGSV 169 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + V EA++L +G EI L G ++ A+ GK ++ E+ LL L EI GL R Sbjct: 170 RSRRIEDAVAEAKRLAASGFKEIVLTGIHLGAY-GKEVE-EEIDLVTLLKELIEISGLER 227 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R ++ +++ LI + L +LHLP+Q+GSD+IL +MNR +T +Y + I Sbjct: 228 IRLSSIEATEVTSDLIDLIATEEKLCRHLHLPLQNGSDKILAAMNRDYTVQQYADKVAEI 287 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RS P IA+++D +VGFPGETD+DF AT L++++ ++ FKYS R GT + QV Sbjct: 288 RSNIPQIALTTDVMVGFPGETDEDFEATYQLIEELAFSDLHVFKYSKREGTAAAKFSNQV 347 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441 +K ER L+K + + +G ++VLIE+ L+ G + V+++ Sbjct: 348 HSKLKKERSAKLRKLADDLASQYRKKFLGAELDVLIEEERDGSTDLLTGLTDNYLRVMID 407 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 ++ ++I+V + ++ L G++ Sbjct: 408 DQDQYRKELIEVELNKLQEDYLIGKIT 434 >gi|281416862|ref|ZP_06247882.1| RNA modification enzyme, MiaB family [Clostridium thermocellum JW20] gi|281408264|gb|EFB38522.1| RNA modification enzyme, MiaB family [Clostridium thermocellum JW20] Length = 434 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 146/443 (32%), Positives = 238/443 (53%), Gaps = 22/443 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI-RN 89 + GC++N Y++ + +MF GY+ V+ D+AD+ V+NTC + + K + R RN Sbjct: 8 TLGCKVNQYETEAISEMFEKAGYKIVDFEDEADVYVINTCTVTNLSDRKSRQMIRRAKRN 67 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--GK 147 +NS +V+V GC AQ EE+ + VN+VVG + R+ E L+ G+ Sbjct: 68 NENS--------IVIVIGCYAQTAPEEVSKIEG-VNLVVGTKDRSRILEYLKELETSGGR 118 Query: 148 RVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 R D +FE L G N K AF+ IQEGC++FCT+C++PY RG SRS Sbjct: 119 RNYVGDIMKTREFEEL-----GVNVYKERTRAFIKIQEGCNQFCTYCIIPYARGPVRSRS 173 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 ++ E L +G E+ L G +V ++ G D + + D++ + EI+G+ R+R Sbjct: 174 EENILKEVSGLAHSGYKEVVLTGIHVASY---GKDIKNTSLIDIIRKVHEIEGIERIRLG 230 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P +++ ++A ++ L P H+ +QSG D LK MNR++T EY + ++ +R Sbjct: 231 SIEPTTVTEEFVRAIKGMEKLCPQFHISLQSGCDSTLKRMNRKYTTKEYLKSVELLRENL 290 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 D+A+++D +VGFPGETD++F T V+K+ +A+ FKYS R GTP ++ +QV Sbjct: 291 KDVAVTTDVMVGFPGETDEEFNETCRFVEKVLFARMHVFKYSRRKGTPAASYPDQVAPQK 350 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNH 445 K ER L + + +N + G+++ VL E+ K K G + G +P V Sbjct: 351 KEERSRILIELASRMTLEYNKSFTGRVLPVLFEQEVKGKEGFMEGLTPNYIRVECKGDKD 410 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 G I+ V + + K + GE+V Sbjct: 411 IEGQILNVLLREAKDDYIVGEIV 433 >gi|332799055|ref|YP_004460554.1| MiaB-like tRNA modifying enzyme [Tepidanaerobacter sp. Re1] gi|332696790|gb|AEE91247.1| MiaB-like tRNA modifying enzyme [Tepidanaerobacter sp. Re1] Length = 435 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 144/448 (32%), Positives = 252/448 (56%), Gaps = 26/448 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF + GC++N Y+S + ++F ++GYE V+ AD+ V+NTC++ ++A K + + Sbjct: 6 FF--TLGCKVNQYESAAIAELFENKGYEIVDFDTKADVYVINTCNVTNESARKSRQIIRK 63 Query: 87 -IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 IRN +++ V V GC Q E+L V+V VG + +R+ +L+E+A Sbjct: 64 AIRNNPSAK--------VAVVGCYVQMALHEVLNIKG-VSVAVGTKDRHRIVDLVEKAEQ 114 Query: 146 GKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + T ++ + FE +++ G+ +K AFL IQ+GC+ FC++C++PY RG Sbjct: 115 CSKPIVTVGNIMKQQTFEEIAL--KGHRQK--TRAFLKIQDGCNMFCSYCIIPYARGPVR 170 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SRS+ ++DEA+ L +G EI L G ++ + G+ E D++ +++I+G+ R+ Sbjct: 171 SRSIDNIIDEAQSLAKDGFKEIVLTGIHLGLY-GRDFKDENIHLLDVISRIADIEGIERI 229 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ +++D +K+ + + H+P+QSG D +L+ MNRR+T E+R ID IR Sbjct: 230 RLSSIEAMELTDEFLKSLCGIKKFCHHFHVPLQSGCDTVLRRMNRRYTTDEFRDRIDYIR 289 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PD +I++D IVGFPGET+++F+ T + + +I +++ F +SPR GT +M Q++ Sbjct: 290 QLMPDASITTDVIVGFPGETEEEFKQTENFIKEINFSRLHVFPFSPRKGTLADDMPNQIE 349 Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 ++VK E RL+ L +KL + F V I +VL E K+ G + V + Sbjct: 350 KSVKVERSHRLISLSEKLEK---DFCKRFVNSIQKVLFED-KKDDNFYEGLTENYIKVGV 405 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 SK II VR+ ++GE+ Sbjct: 406 KSKQDLHNKIIHVRLKKNFNDYVFGEVT 433 >gi|213023715|ref|ZP_03338162.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 245 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 120/241 (49%), Positives = 161/241 (66%), Gaps = 12/241 (4%) Query: 68 NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127 NTC IREKA EKV+ LGR R LK ++ DL++ V GCVA EGE I +R+ V+++ Sbjct: 1 NTCSIREKAQEKVFHQLGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDII 56 Query: 128 VGPQTYYRLPELLERARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185 GPQT +RLPE++ R G R VVD + +KF+RL R G TAF++I EG Sbjct: 57 FGPQTLHRLPEMINSVR-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEG 110 Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245 C+K+CT+CVVPYTRG E+SR ++ E +L GV E+ LLGQNVNAWRG+ DG Sbjct: 111 CNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTG 170 Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 TF+DLL ++ I G+ R+R+TTSHP + +D +I+ + D L+ +LHLPVQSGSDR+L Sbjct: 171 TFADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNL 230 Query: 306 M 306 M Sbjct: 231 M 231 >gi|125972674|ref|YP_001036584.1| RNA modification protein [Clostridium thermocellum ATCC 27405] gi|256004833|ref|ZP_05429807.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM 2360] gi|125712899|gb|ABN51391.1| RNA modification enzyme, MiaB family [Clostridium thermocellum ATCC 27405] gi|255991143|gb|EEU01251.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM 2360] gi|316941090|gb|ADU75124.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM 1313] Length = 434 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 146/443 (32%), Positives = 238/443 (53%), Gaps = 22/443 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI-RN 89 + GC++N Y++ + +MF GY+ V+ D+AD+ V+NTC + + K + R RN Sbjct: 8 TLGCKVNQYETEAISEMFEKAGYKIVDFEDEADVYVINTCTVTNLSDRKSRQMIRRAKRN 67 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--GK 147 +NS +V+V GC AQ EE+ + VN+VVG + R+ E L+ G+ Sbjct: 68 NENS--------IVIVIGCYAQTAPEEVSKIEG-VNLVVGTKDRSRILEYLKELETSGGR 118 Query: 148 RVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 R D +FE L G N K AF+ IQEGC++FCT+C++PY RG SRS Sbjct: 119 RNYVGDIMKTREFEEL-----GVNVYKERTRAFIKIQEGCNQFCTYCIIPYARGPVRSRS 173 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 ++ E L +G E+ L G +V ++ G D + + D++ + EI+G+ R+R Sbjct: 174 EENILKEVSGLAHSGYKEVVLTGIHVASY---GKDIKNTSLIDIIRKVHEIEGIERIRLG 230 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P +++ ++A ++ L P H+ +QSG D LK MNR++T EY + ++ +R Sbjct: 231 SIEPTTVTEEFVRAIKGMEKLCPQFHISLQSGCDSTLKRMNRKYTTKEYLRSVELLRENL 290 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 D+A+++D +VGFPGETD++F T V+K+ +A+ FKYS R GTP ++ +QV Sbjct: 291 KDVAVTTDVMVGFPGETDEEFNETCRFVEKVLFARMHVFKYSRRKGTPAASYPDQVAPQK 350 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNH 445 K ER L + + +N + G+++ VL E+ K K G + G +P V Sbjct: 351 KEERSRILIELASRMTLEYNKSFTGRVLPVLFEQEVKGKEGFMEGLTPNYIRVECKGDKD 410 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 G I+ V + + K + GE+V Sbjct: 411 IEGQILNVLLREAKDDYIVGEIV 433 >gi|323704197|ref|ZP_08115776.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium xylanolyticum LX-11] gi|323536263|gb|EGB26035.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium xylanolyticum LX-11] Length = 467 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 148/445 (33%), Positives = 241/445 (54%), Gaps = 21/445 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF S GC++N Y++ M ++F S GY+ V + AD+ V+NTC + + K Sbjct: 25 FF--SLGCKVNQYETEAMAEIFKSLGYDVVGFDEYADVYVINTCTVTGRGDMKSRQ---E 79 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 IR K K D +V V GC +Q E+L P VNVV+G + + +L+E+A Sbjct: 80 IRKAK----KINPDSVVAVVGCYSQVASNEVLN-IPEVNVVLGTKNKGEIVKLVEKAANA 134 Query: 147 KRVVDTDYSVED-KFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +V + +D KFE L I G+ R A+L IQ+GC+++CT+C++PY RG S Sbjct: 135 NKVNAVEDIFKDRKFEELKISAQEGHTR-----AYLKIQDGCNQYCTYCIIPYARGPIRS 189 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + + DE ++L DNG E+ L G +V ++ G D E D++ + EI+G+ R+R Sbjct: 190 RKPNDIFDEVKRLRDNGYKEVVLTGIHVASY---GKDLENVDLLDIIKMIHEIEGIERIR 246 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P +++ ++ L + H+ +QSGSD +LK M R++T EY++I++R+R Sbjct: 247 LSSIEPTFLTEDFVREVSLLPKFCRHYHISLQSGSDSVLKRMGRKYTTSEYKRIVERVRK 306 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 D+AI++D +VGFPGET+ +F T + I +++ FKYS R GT ++ +Q+ Sbjct: 307 YIEDVAITTDVMVGFPGETEREFNETYEFAKDIEFSKMHVFKYSRRAGTKAADYPDQIKN 366 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSK 443 +VK ER L K E ++ F +G + VL E+ KE V G + V + S Sbjct: 367 SVKEERSKILIKLSEECELKFYRKFLGSTLNVLFEQRTKELNDYVEGLTDNYIRVAVKSD 426 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 + I+ V++ D+K G +V Sbjct: 427 LNIKNKILPVKLIDLKKDFAIGNIV 451 >gi|251780327|ref|ZP_04823247.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084642|gb|EES50532.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 434 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 141/430 (32%), Positives = 237/430 (55%), Gaps = 20/430 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M + F +GY + D AD+ V+NTC + +K + + R Sbjct: 7 TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKAR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV- 149 + + ++ V GC +Q EE+ + V+VV+G + + + +AR K + Sbjct: 65 -----RTNSNAIIAVVGCYSQIAPEEVSKIEG-VDVVLGTRNKGDIVYFVNKARDEKAIQ 118 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V + +++K FE L+I + Y K AFL IQ+GC++FCTFC++PY RG S+ Sbjct: 119 VSVNEVLKNKEFEELNIEE--YQDK--TRAFLKIQDGCNRFCTFCLIPYARGATCSKKPE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 +V++E +KL ++G E+ L G + ++ G+D G T LL + +I G+ R+R + Sbjct: 175 KVIEEVKKLAEHGFKEVILSGIHTASY---GVDLGTDVTLISLLEDIEKIDGIDRVRIGS 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P +D +I ++ L P+ HL +QSGSD LK MNRR+TA EY + + +R Sbjct: 232 IEPAFFTDEVINKIKNMKKLCPHFHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQ 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D++I++D IVGFPGET+D+F T + + K+ + FKYSPR GT + M Q+D +K Sbjct: 292 DVSITTDLIVGFPGETEDEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQIDGTIK 351 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP-WLQSVVLNSKNH 445 +R L + +E +V F VG+ ++VLIE+ K G G + ++++ + ++ Sbjct: 352 DKRSKILSELNKENEVDFVKKLVGREMDVLIERECSNKPGIFEGYTKNYVKAEISDASKE 411 Query: 446 NIGDIIKVRI 455 IG I+ I Sbjct: 412 MIGKIMDCNI 421 >gi|152976740|ref|YP_001376257.1| RNA modification protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025492|gb|ABS23262.1| RNA modification enzyme, MiaB family [Bacillus cytotoxicus NVH 391-98] Length = 450 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 142/444 (31%), Positives = 241/444 (54%), Gaps = 21/444 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYERV+ AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQSGYERVDFEKTADVYVVNTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ D ++ V GC AQ EI+ P V++VVG Q ++ + +E+ R ++ + Sbjct: 65 ----VRHNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLDYIEQYRQERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+KGL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAGLLRDMEAEVKGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ V++ +LH+P+QSGS+ +LK M R++T +++ ++R++ P Sbjct: 233 IEASQISDEVIEVLDKSKVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLNRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +Q+ E VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQIPEEVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 ER+ L + + + G+++E++ E K G +G VG + VV Sbjct: 353 NERVHRLIELSNQLAKEYASQFEGEVLEIIPEEPFKEGDREGLYVGYTDNYLKVVFEGSE 412 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG ++KV+IT G+ V Sbjct: 413 ELIGKLVKVKITKAGYPYNEGQFV 436 >gi|139439629|ref|ZP_01773042.1| Hypothetical protein COLAER_02069 [Collinsella aerofaciens ATCC 25986] gi|133774970|gb|EBA38790.1| Hypothetical protein COLAER_02069 [Collinsella aerofaciens ATCC 25986] Length = 310 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 127/305 (41%), Positives = 184/305 (60%), Gaps = 9/305 (2%) Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229 ++R+ A++ I GC+ FCT+C+VPY RG E SR ++VDE L+ GV EITLLG Sbjct: 5 WHRETQYHAWVPIMTGCNNFCTYCIVPYVRGREKSRPFEEIVDEVTGLVRQGVREITLLG 64 Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289 QNVN++ G+ L G K F+DLL ++ + G+ R+ +T+SHP+D+ I A + +MP Sbjct: 65 QNVNSY-GRDLFG-KPRFADLLRAVGD-TGVERIFFTSSHPKDLLPETIDAMAETPAVMP 121 Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349 LHL VQSGS RILK MNRR+T +Y ++DRIR+ PDIA+S+D IVGFPGET++DF Sbjct: 122 QLHLAVQSGSTRILKEMNRRYTREDYLGLVDRIRNRMPDIALSTDIIVGFPGETEEDFEQ 181 Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409 T+ L + + YAQA++F YS R GTP + + + V ER L K + +N Sbjct: 182 TLSLAETVRYAQAYTFIYSKRAGTPAAEIDDPTPHEVILERFNRLVKVIETTAHEYNQGE 241 Query: 410 VGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLN-----SKNHNIGDIIKVRITDVKISTL 463 + ++ LIE K+ L+G+SP Q+V S + +G I+ V + K L Sbjct: 242 LHTVVPALIEGTSKKNDAVLLGKSPKNQTVHAPIPEGYSIDQLVGKIVDVDVDVAKTWYL 301 Query: 464 YGELV 468 G +V Sbjct: 302 SGSVV 306 >gi|323702404|ref|ZP_08114069.1| RNA modification enzyme, MiaB family [Desulfotomaculum nigrificans DSM 574] gi|323532710|gb|EGB22584.1| RNA modification enzyme, MiaB family [Desulfotomaculum nigrificans DSM 574] Length = 441 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 152/449 (33%), Positives = 235/449 (52%), Gaps = 28/449 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG--R 86 + + GC++N Y+S + D+F GY+ V+ AD+ V+NTC + + LG + Sbjct: 7 IYTLGCKVNQYESAAIGDLFRQAGYQLVDFEQPADVYVVNTCTV---------THLGDRK 57 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 R + K+ ++ V GC AQ E+L P V++VVG + R+ +L+E Sbjct: 58 SRQIIRRAAKQNPAAVIAVTGCYAQTSPGEVLE-IPGVDLVVGTRDRARIVKLVEGHVKN 116 Query: 147 KRVVDT--DYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K V+ D + FE L + + G R AFL IQEGC+ FC +C++PY RG Sbjct: 117 KGPVNAVEDIMQSECFEELPVPTEQGKAR-----AFLKIQEGCNSFCAYCIIPYARGPVR 171 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR V+ A +L+ G EI L G ++ A+ G+ + + L+ L+ + GL RL Sbjct: 172 SRLPENVLKAATELVQQGYQEIVLTGIHIGAY-GQDFTAQNIDLAWLVERLAAVPGLRRL 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R + P D++ LI+A + + +LH+P+QSG D+IL M RR+ EY ++I I Sbjct: 231 RLGSVEPHDINTALIEAVANHPNICRHLHIPLQSGDDQILAKMRRRYDTREYNRLIAEIY 290 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P +AI+SD IVGFPGET+ +F+ T+ V K +A+ FKYSPR GTP + +QV Sbjct: 291 RKVPGVAITSDVIVGFPGETEANFQNTLRTVAKAKFARIHVFKYSPRKGTPAAEFADQVP 350 Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVV 439 K E RL+ L ++L + F VG+ +EVL+E+ E L G + V+ Sbjct: 351 PEEKEERSRRLIELGEQLAHE---FARIQVGKDLEVLVEQPSHEYTPLWEGHTDTYLKVI 407 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + G I KV I +V+ L G ++ Sbjct: 408 FPADESVRGQIAKVHIDNVEGPILKGTII 436 >gi|148262793|ref|YP_001229499.1| MiaB-like tRNA modifying enzyme YliG [Geobacter uraniireducens Rf4] gi|238066246|sp|A5GBX9|RIMO_GEOUR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|146396293|gb|ABQ24926.1| SSU ribosomal protein S12P methylthiotransferase [Geobacter uraniireducens Rf4] Length = 448 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 157/463 (33%), Positives = 246/463 (53%), Gaps = 37/463 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVY 81 + ++ + S GC N+ D+ M + YE +AD+I++NTC I+E E + Sbjct: 5 IKEKVSLVSLGCPKNLVDAEVMLGYLAKEKYEVTTDEREADIIIVNTCSFIKEAKQESID 64 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140 + L ++R + L++V GC+ Q EE+++ P V++ VG Y R+ E++ Sbjct: 65 TILDLADRKHDARCR-----LLIVTGCLPQRYQEELVKELPEVDIFVGTGDYPRIAEIIA 119 Query: 141 ------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 E+ R+ D ++ ++ RL TA+L I EGC C++CV Sbjct: 120 EKEGMSEQLRY---TGDPNFLYDEDLPRL-------QSSPYYTAYLKIAEGCSNCCSYCV 169 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 +P RG SR L +++ EAR+L+ GV EI L+ Q++ + GK L G + L+ L Sbjct: 170 IPSLRGAFRSRPLDKLLKEARELVARGVKEINLIAQDITGY-GKDLAG-GASLEGLIKEL 227 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 + + GL +R ++P +SD LI+ D D + YL +P+Q SD +LK MNRR + E Sbjct: 228 AALDGLQWIRLLYAYPDGISDSLIQLIRDEDKVCKYLDIPLQHVSDPVLKRMNRRSSEAE 287 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 R +I ++R P IA+ + IVGFPGETD+DF+ + V++ + + F YS GTP Sbjct: 288 IRSLIAKLRGEIPGIALRTSLIVGFPGETDEDFKKLLHFVEETRFDRLGVFCYSREEGTP 347 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQ-QVSF--NDACVGQIIEVLIEKHGKE-----KG 426 + M +QV E VK ER +K +R Q +VSF N + V VLIE + +E KG Sbjct: 348 SAEMPDQVSERVKRER---YKKLMRTQARVSFKHNRSLVDTEELVLIEGYSEETELLLKG 404 Query: 427 KLVGRSPWLQ-SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + ++P + V + S N IGDI+K+RITD L GE+V Sbjct: 405 RSSKQAPDIDGQVYVTSGNAQIGDIVKLRITDSSDYDLIGEIV 447 >gi|166030899|ref|ZP_02233728.1| hypothetical protein DORFOR_00579 [Dorea formicigenerans ATCC 27755] gi|166029166|gb|EDR47923.1| hypothetical protein DORFOR_00579 [Dorea formicigenerans ATCC 27755] Length = 440 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 239/451 (52%), Gaps = 30/451 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + +GY+ V+S +DAD+IV+NTC A E+ + + Sbjct: 7 SLGCDKNLVDSEVMLGLLDKKGYQIVDSEEDADIIVVNTCCFIHDAKEESIQTILEMAEY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K KEG ++V GC+AQ +EI+ P V+ V+G +Y + E +E A G V Sbjct: 67 K----KEGKLKALIVTGCLAQRYQQEIIDEIPEVDAVLGTTSYDHIVEAVEEALAGNGHV 122 Query: 151 ---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D D + K +RL G Y A++ I EGCDK CT+C++P RG S + Sbjct: 123 VLEDVDALPDVKEKRLVTTGGHY-------AYMKIAEGCDKHCTYCIIPKLRGNYRSVPM 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +++ EA+ L D GV E+ L+ Q + GK L GEK + LL L +I G+ +R Sbjct: 176 EKLLAEAKDLADQGVKELILVAQETTVY-GKDLYGEK-SLHKLLRELCKISGIQWIRILY 233 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P ++ D LI+ + + + YL LP+Q SD +LK M RR + + +II+++R P Sbjct: 234 CYPEEIYDELIQTIKEENKVCHYLDLPIQHASDAVLKRMGRRTSKAQLVEIIEKLRKEIP 293 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 DI++ + I GFPGET + D VD++ + + F YSP TP + M EQ+ E VK Sbjct: 294 DISLRTTLITGFPGETQEQHEELKDFVDEMEFDRLGVFTYSPEEDTPAATMTEQIPEEVK 353 Query: 388 AERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439 +R Q +L E Q+++F+ A VG+ + V+IE ++ VGR+ P + ++ Sbjct: 354 EDR----QAELMELQQEIAFDLAEDMVGREVLVMIEGKVADENAYVGRTYKDAPNVDGLI 409 Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + + + GD +VR+T L GEL+ Sbjct: 410 FINTDEELMSGDFARVRVTGALEYDLIGELI 440 >gi|323464328|gb|ADX76481.1| conserved hypothetical protein [Staphylococcus pseudintermedius ED99] Length = 449 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 135/440 (30%), Positives = 236/440 (53%), Gaps = 17/440 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F Y RV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKDAEYNRVDFEQNADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V++VVG Q ++L + ++ + ++ + Sbjct: 65 ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDIVVGTQDRHKLLDYIDTYQDERQPI 119 Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVSNIMKNRTYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V+++A +L+++G EI L G + G G D + + LL L + GL R+R ++ Sbjct: 176 KVIEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETVDGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I+ ++ +LH+P+QSGSD +LK M R+++ + + I ++ + P Sbjct: 233 EASQLTDEVIEVLQQSQKVVRHLHIPLQSGSDSVLKRMRRKYSMAHFSERIQKLHAALPG 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+ +F+ T D + +++ F YSPR+GTP + M +Q+DE +K Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 ER+ L + + ++ ++EV+ E+ G + G LVG + V IG Sbjct: 353 ERVHKLIELSNQLAKTYASKFENDVLEVIPEEKGSQDGLLVGYADNYMKVEFVGDESLIG 412 Query: 449 DIIKVRITDVKISTLYGELV 468 I KV++T G L+ Sbjct: 413 QICKVKVTQAGYPINQGTLL 432 >gi|319892634|ref|YP_004149509.1| MiaB family protein, possibly involved in tRNA or rRNA modification [Staphylococcus pseudintermedius HKU10-03] gi|317162330|gb|ADV05873.1| MiaB family protein, possibly involved in tRNA or rRNA modification [Staphylococcus pseudintermedius HKU10-03] Length = 449 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 135/440 (30%), Positives = 236/440 (53%), Gaps = 17/440 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F Y RV+ +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKDAEYNRVDFEQNADVFVINTCTVTNTGDKKSRQIIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V++VVG Q ++L + ++ + ++ + Sbjct: 65 ----IRQNPDAVICVTGCYAQTSSAEIME-IPGVDIVVGTQDRHKLLDYIDTYQDERQPI 119 Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVSNIMKNRTYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V+++A +L+++G EI L G + G G D + + LL L + GL R+R ++ Sbjct: 176 KVIEQATQLVNSGYKEIVLTGIHTG---GYGQDLKDYNLAQLLRDLETVDGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I+ ++ +LH+P+QSGSD +LK M R+++ + + I ++ + P Sbjct: 233 EASQLTDEVIEVLQQSQKVVRHLHIPLQSGSDSVLKRMRRKYSMAHFSERIQKLHAALPG 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+ +F+ T D + +++ F YSPR+GTP + M +Q+DE +K Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 ER+ L + + ++ ++EV+ E+ G + G LVG + V IG Sbjct: 353 ERVHKLIELSNQLAKTYASKFENDVLEVIPEEKGSQDGLLVGYADNYMKVEFVGDESLIG 412 Query: 449 DIIKVRITDVKISTLYGELV 468 I KV++T G L+ Sbjct: 413 QICKVKVTQAGYPINQGTLL 432 >gi|331085298|ref|ZP_08334384.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408081|gb|EGG87571.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae bacterium 9_1_43BFAA] Length = 440 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 152/455 (33%), Positives = 241/455 (52%), Gaps = 31/455 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FV S GC N+ D+ M M S+GY+ V +AD+IV+NTC A E+ + Sbjct: 4 LFV-SLGCDKNLVDTEVMLGMLASRGYQMVEDESEADIIVINTCCFIHDAKEESIQTILE 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + LK KEG ++V GC+AQ +EI+ P V+ V+G +Y ++ + ++ A G Sbjct: 63 MSELK----KEGRLKALIVTGCLAQRYQQEIIDEIPEVDAVLGTTSYDKILDAVDEALEG 118 Query: 147 K---RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 ++ D D +RL G + A+L I EGCDK CT+C++P RG Sbjct: 119 HHYLKMTDIDALPTVDSKRLVTTGGHF-------AYLKIAEGCDKHCTYCIIPKIRGNFR 171 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S + Q+V EA +L + GV E+ L+ Q + GK L GEK + LL L +I G+ + Sbjct: 172 SVPMEQLVREAEELAEQGVKELILVAQETTLY-GKDLYGEK-SLHKLLKELCKIAGIRWI 229 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R +P +++D LI+ + + YL LP+Q SD ILK M RR + + +II+++R Sbjct: 230 RVLYCYPEEITDELIQVMKEESKICHYLDLPIQHASDGILKRMGRRTSKAQLIEIIEKLR 289 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PDI + + I GFPGET++ MD VD++ + + F YSP TP + M +Q++ Sbjct: 290 REIPDITLRTTLITGFPGETEEQHEELMDFVDQMEFDRLGVFTYSPEEDTPAATMPDQIE 349 Query: 384 ENVKAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWL 435 ENVK +R Q +L E Q ++F A +G+ + V+IE ++ VGR+ P + Sbjct: 350 ENVKEDR----QAELMELQQDIAFEQAEDMIGREVLVMIEGKIADENAYVGRTYKDAPNV 405 Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 ++ + + + GD +V++T L GE+V Sbjct: 406 DGLIFVNTDEELMSGDFARVKVTGALEYDLIGEIV 440 >gi|331270008|ref|YP_004396500.1| MiaB-like tRNA modifying protein [Clostridium botulinum BKT015925] gi|329126558|gb|AEB76503.1| MiaB-like tRNA modifying enzyme [Clostridium botulinum BKT015925] Length = 433 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 143/444 (32%), Positives = 246/444 (55%), Gaps = 23/444 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++NVY+S M + F GYE V + AD+ V+NTC + + +K + R + Sbjct: 7 TLGCRVNVYESEAMAEKFIKGGYEVVQFDEVADVYVVNTCTVTNMSDKKSRQMISRAK-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-GKRV 149 ++ + ++ GC Q E++ R V+V++G + + + RA+ GK + Sbjct: 65 -----RKNPESVIAAVGCYTQIAPEKV-REIGDVDVILGTRNKGDIVYWVNRAKEEGKTI 118 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V+ + +++K FE L+I + Y K AFL IQ+GC+ FC++C++P+ RG S++ Sbjct: 119 VEVNDVLKNKQFEELNIEE--YQDK--TRAFLKIQDGCNNFCSYCLIPFARGAVCSKNPE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++DE +KL ++G E+ L G +++++ G L+G +L ++ EI+G+ R+R + Sbjct: 175 TIIDEVKKLSEHGFKEVILSGIDISSY-GVDLEG-NWNLLKVLKAIDEIEGINRVRIGSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P + +IK G L L P+ HL +QSG + LK MNR++T E+R II +R D Sbjct: 233 GPEFFDEDIIKEIGSLKKLCPHFHLSLQSGCNSTLKRMNRKYTTEEFRDIIVLLRKYVKD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I+I++D IVGFPGET ++F T + + +I ++ FKYSPR GT M QVD N+K Sbjct: 293 ISITTDIIVGFPGETKEEFEETYNYLKEIKLSKMHIFKYSPRTGTRAEKMENQVDGNIKE 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSKN 444 ER LL L +K + F + +G+ +++L E+ +K + G +P V+ S+ Sbjct: 353 ERSKLLLALNEK---NEKEFMNKFIGEDMKILYEQKCSDKEEYYEGYTPNYIKVIAKSRE 409 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 G I+ ++ + K GE++ Sbjct: 410 DISGKILNTKLIETKEEYTIGEII 433 >gi|312898000|ref|ZP_07757409.1| MiaB-like tRNA modifying enzyme [Megasphaera micronuciformis F0359] gi|310620925|gb|EFQ04476.1| MiaB-like tRNA modifying enzyme [Megasphaera micronuciformis F0359] Length = 438 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 139/398 (34%), Positives = 217/398 (54%), Gaps = 25/398 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC---HIREKAAEKVYSFLGRI 87 + GC++N YD+ M +F + GYE + AD+ V+NTC H+ EK + ++ I Sbjct: 8 TLGCRVNQYDTDSMRGLFAAAGYEEADFSGPADVYVINTCSVTHVGEKKSRQI------I 61 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP---QTYYRLPELLERAR 144 R K + D LV+V GC AQ ++L P V+ V+G + ++ E L R Sbjct: 62 RRAK----RNNADGLVIVTGCYAQL-SPDVLSAIPGVDAVIGTNERKCIVQVVESLRNER 116 Query: 145 FGKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+ V D D+FE + + R A L IQEGC+ FC +C++PYTRG Sbjct: 117 SGRTVRAVHDIMGRDEFEEIPLYPSAVEHTR---ADLKIQEGCNNFCAYCIIPYTRGSLK 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 SR V++EA++L G EI L G ++ A+ G+D ++ T + +L L + R Sbjct: 174 SRQPDAVIEEAKRLSAAGFKEIVLTGIHLGAY---GMDLPDRPTLALVLKRLLAETDIAR 230 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R + ++ D L++A + P+LHLP+QSGSD ILKSM R +T EY +I+ + Sbjct: 231 IRMGSIESVEIGDDLVEAINSSSRICPHLHLPMQSGSDEILKSMKRHYTKEEYILLIEDL 290 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 D+ +S+D I+GFPGETD+ F TMD + ++ ++ +F YSPR GTP + M QV Sbjct: 291 HKKIKDLTVSTDLILGFPGETDELFDETMDTLKRLKFSHIHAFPYSPREGTPAAQMENQV 350 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 +VK +R+ + +EQ+ D +G+ + VLIE+ Sbjct: 351 SSDVKKKRVETVNALSKEQKEEILDGMIGKTVHVLIEE 388 >gi|326201371|ref|ZP_08191243.1| RNA modification enzyme, MiaB family [Clostridium papyrosolvens DSM 2782] gi|325988939|gb|EGD49763.1| RNA modification enzyme, MiaB family [Clostridium papyrosolvens DSM 2782] Length = 436 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 147/445 (33%), Positives = 243/445 (54%), Gaps = 33/445 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S + +F GYE V+ +++ ++NTC + + K IR Sbjct: 8 TLGCKVNQYESEAVSSIFEQNGYEIVSFEQVSNVYIINTCTVTNLSDRKSRQ---AIRKA 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149 K K D +V+V GC AQ EE+L+ P VN+V+G + R+ E +ER G+ R+ Sbjct: 65 K----KTNPDSIVIVMGCYAQTSSEEVLK-IPGVNMVIGTKDRGRILEYVERIEAGECRI 119 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 D + + FE L + K A+L IQEGC +FC +C++PY RG SR Sbjct: 120 NAVDNIMASRSFEELKLS----TFKERTRAYLKIQEGCSQFCAYCIIPYARGPIRSRKPD 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +++E R+L D+G E+ L G ++ ++ G + E + D++ + I G+ R+R + Sbjct: 176 DIIEEVRQLADSGFLEVVLTGIHLASY---GRELEDTSLLDIIRKIHSIDGIKRIRLGSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ ++A L L P+ HL +QSG D+ L MNR++ EYR+ ++ +++ PD Sbjct: 233 EPTTITKEFVEAAVGLPKLCPHFHLSLQSGCDKTLVEMNRKYNTDEYRRSVELLKNNIPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +AI++D +VGFPGET +DF + D ++IG+++ FKYSPR GTP + M QV K Sbjct: 293 VAITTDLMVGFPGETGEDFAESRDFAEEIGFSKIHVFKYSPRKGTPAAGMKNQVSPEEKE 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSPWLQSVVLNSK 443 R +L L +L ++ + + VG+ +EVL E+ HG E G + G + V+ Sbjct: 353 RRSEIMLALSDELEKK---YLEKYVGRDMEVLYEQEMHG-EDGYIEGLTNNYIRVMAK-- 406 Query: 444 NHNIGDI-IKVRITDVKISTLYGEL 467 GDI +K ++ + K+S + G L Sbjct: 407 ----GDISLKGKLAETKLSKVNGVL 427 >gi|229051301|ref|ZP_04194819.1| hypothetical protein bcere0027_52370 [Bacillus cereus AH676] gi|229111783|ref|ZP_04241330.1| hypothetical protein bcere0018_40280 [Bacillus cereus Rock1-15] gi|229148157|ref|ZP_04276463.1| hypothetical protein bcere0012_52520 [Bacillus cereus BDRD-ST24] gi|228635297|gb|EEK91821.1| hypothetical protein bcere0012_52520 [Bacillus cereus BDRD-ST24] gi|228671657|gb|EEL26954.1| hypothetical protein bcere0018_40280 [Bacillus cereus Rock1-15] gi|228722059|gb|EEL73486.1| hypothetical protein bcere0027_52370 [Bacillus cereus AH676] Length = 450 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 140/432 (32%), Positives = 238/432 (55%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ V P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEVLP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + A G+++E++ E K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|169829242|ref|YP_001699400.1| hypothetical protein Bsph_3790 [Lysinibacillus sphaericus C3-41] gi|168993730|gb|ACA41270.1| UPF0004 protein [Lysinibacillus sphaericus C3-41] Length = 432 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 140/440 (31%), Positives = 236/440 (53%), Gaps = 22/440 (5%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN Y++ + +F +GY+R AD+ V+NTC + +K + R I Sbjct: 1 MNHYETEAIWQLFKDEGYDRTEFDQQADVYVINTCTVTNTGDKKSRQVIRRA-------I 53 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 ++ D ++ V GC AQ EI+ P V++VVG Q +L +++ R ++ ++ + Sbjct: 54 RQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRTKLLGYIDQYRAERQPINAVRN 112 Query: 156 VEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDE 213 + +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR +V+ + Sbjct: 113 IMKNRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEVLHQ 168 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPRD 272 A++L+D G EI L G + G G D + + LL L + + GL RLR ++ Sbjct: 169 AQQLVDAGYLEIVLTGIHTG---GYGQDLKDYNLAQLLRDLEANVTGLKRLRISSIEASQ 225 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 ++D +I + +++ +LH+P+QSGSD +LK M R++T + + + ++ PD+A++ Sbjct: 226 LTDEVIDVLRESKIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFGERLTKLHEALPDLAVT 285 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE--- 389 SD IVGFPGET+++F T + + +++ F +SPR GTP + M +Q+DE++K E Sbjct: 286 SDVIVGFPGETEEEFMDTYNFIRDHKFSELHVFPFSPRTGTPAARMEDQIDEDIKNERVH 345 Query: 390 RLLCLQKKLREQQVS-FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 RL+ L +L ++ S F D + I E + +E+G L G + VV IG Sbjct: 346 RLISLNDQLAKEYASRFEDQVLEVIPEEFVHDGSEEEGLLTGYTDNYLKVVFEGPESLIG 405 Query: 449 DIIKVRITDVKISTLYGELV 468 ++KV+IT G+ V Sbjct: 406 QLVKVKITQAGYPHSQGQFV 425 >gi|319651610|ref|ZP_08005737.1| hypothetical protein HMPREF1013_02349 [Bacillus sp. 2_A_57_CT2] gi|317396677|gb|EFV77388.1| hypothetical protein HMPREF1013_02349 [Bacillus sp. 2_A_57_CT2] Length = 450 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 142/447 (31%), Positives = 246/447 (55%), Gaps = 27/447 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER + +D+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEAGYERTDFESVSDVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V++VVG Q ++ E +E+ + ++ + Sbjct: 65 ----IRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRVKMLEYIEQYKQERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKNRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL L +++KGL RLR ++ Sbjct: 176 EVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAMLLRDLEAQVKGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ V++ +LH+P+QSGS+ +LK M R++T + + ++R++ P Sbjct: 233 IEASQITDEVIEVMDQSKVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLERLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +A++SD IVGFPGET+++F T + + + +++ F YS R GTP + M +Q+DE +K Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMDDQIDEEIK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK---LVGRSPWLQSVVLN 441 E RL+ L +L ++ S + G+++EV+ E+ KE VG + VV Sbjct: 353 NERVHRLIALSDQLAKEYASQYE---GEVLEVIPEESFKESSDSSLFVGYTDNYLKVVFP 409 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +G I+KV+IT G+ V Sbjct: 410 AAEEMVGQIVKVKITKAGYPYNEGQFV 436 >gi|227824689|ref|ZP_03989521.1| RNA modification enzyme [Acidaminococcus sp. D21] gi|226905188|gb|EEH91106.1| RNA modification enzyme [Acidaminococcus sp. D21] Length = 435 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 147/432 (34%), Positives = 229/432 (53%), Gaps = 23/432 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N D+ ME +F GYE V + +D+ ++NTC + G+ R + Sbjct: 9 TLGCKVNQSDTASMEKLFREAGYEIVPFGEASDICLINTCVVTNMGQ-------GKSRRM 61 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-- 148 IK L+VV GC Q EE+ V+++VG + R+ EL+E R G+R Sbjct: 62 IRRTIKRDPKPLIVVTGCYPQTAPEEVAALEG-VDLLVGNRDRARIVELVEE-RLGERDA 119 Query: 149 --VVDT-DYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V D D V +FE L+ VD +R AFL IQEGCD++C++C++PY RG S Sbjct: 120 APVNDVLDLPVGSEFEDLAASVDDSRDR-----AFLKIQEGCDQYCSYCIIPYARGHLRS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R LS + E L + G E+ LLG ++ + + +GE+ SD + + + L RLR Sbjct: 175 RPLSSIRREVEHLTEEGYKEVVLLGIHLGCYGKETANGER--LSDAVSAALSVPALCRLR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + ++ L++ + +LHLP+QSG D+ILK+MNR + ++++IDRIR+ Sbjct: 233 LGSLESVEVQPELLRLMQEDPRFCCHLHLPLQSGCDKILKAMNRPYDTARFKELIDRIRA 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD+AI++D IVGFPGET+ DF T+ + G+A+ F YS R GTP + +Q+ Sbjct: 293 AVPDVAITTDIIVGFPGETEADFAQTLTFAEACGFAKIHIFPYSKRKGTPAAERKDQLSN 352 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 K +R+ L+ R+ F +G+ VL E+ G+ KG G +P V L S+ Sbjct: 353 KEKEDRVHRLEAVDRKGNEIFRKTLIGRQYPVLWEQIGR-KGLWEGLTPNYVRVYLKSEE 411 Query: 445 HNIGDIIKVRIT 456 G + V +T Sbjct: 412 DLTGTLTTVAVT 423 >gi|220929654|ref|YP_002506563.1| RNA modification enzyme, MiaB family [Clostridium cellulolyticum H10] gi|219999982|gb|ACL76583.1| RNA modification enzyme, MiaB family [Clostridium cellulolyticum H10] Length = 454 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 134/442 (30%), Positives = 238/442 (53%), Gaps = 20/442 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S + +F GYE V+ D+D+ ++NTC + + K + + + Sbjct: 29 TLGCKVNQYESEAVSSIFEKNGYEVVSFEQDSDVYIINTCTVTNLSDRKSRQAIRKAK-- 86 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K + +V+V GC AQ EE+L+ P V++V+G + R+ E +ER G+ + Sbjct: 87 -----KTNPNSIVIVMGCYAQTSSEEVLK-IPGVDMVIGTKDRSRIIEYVERIESGECRI 140 Query: 151 DT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + + V FE L + K A+L IQEGC +FC++C++PY RG SR Sbjct: 141 NAVDNIMVSGTFEELKLS----TYKERTRAYLKIQEGCSQFCSYCIIPYARGPIRSRKPD 196 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +++E + L ++G EI L G ++ ++ G + + D++ I G+ R+R + Sbjct: 197 DIIEEVKHLAESGFLEIVLTGIHLASF---GREIKDTNLLDIIKKTHSIDGIKRIRLGSL 253 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P +++ + A G L L P+ HL +QSG D+ L MNR++ EYR+ ++ +++ PD Sbjct: 254 EPTTITEEFVDAVGRLPKLCPHFHLSLQSGCDKTLAEMNRKYRTDEYRKSVELLKNNIPD 313 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +AI++D +VGFPGET++DF + D ++IG+++ FKYSPR GTP + M Q+ K Sbjct: 314 VAITTDLMVGFPGETEEDFLMSRDFAEEIGFSKIHVFKYSPRKGTPAAVMKNQIGPEEKE 373 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSPWLQSVVLNSKNHN 446 R + E + + + VG+ +EVL E+ GKE G + G + V+ ++ Sbjct: 374 RRSEIMLDLSDELEKKYMEGFVGRNMEVLYEQEMQGKE-GYIEGLTKNYIRVMAKGDSNL 432 Query: 447 IGDIIKVRITDVKISTLYGELV 468 G +++ ++ V + G ++ Sbjct: 433 KGKLMETKLYKVNGTLFEGNII 454 >gi|332295064|ref|YP_004436987.1| RNA modification enzyme, MiaB family [Thermodesulfobium narugense DSM 14796] gi|332178167|gb|AEE13856.1| RNA modification enzyme, MiaB family [Thermodesulfobium narugense DSM 14796] Length = 448 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 147/448 (32%), Positives = 238/448 (53%), Gaps = 15/448 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FFV+ GCQMN Y+ +F G N +DA++IVL +C +RE A K + Sbjct: 14 LPKTFFVEVLGCQMNKYEGEVFTSLFLKHGLLPSNP-EDAEVIVLLSCAVRENAENKALA 72 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G+ K KE + GC A+ GE+IL R P ++V+ P + + +++ Sbjct: 73 RIGKYLKYK----KERKLKCFALGGCQAKIWGEKILERFPKIDVLFSPASLEDVETIVKH 128 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 ++ S+ + + + + + Y+ +A+L I GC++FCT+C VPY RG E Sbjct: 129 IIERSNYINLKESITNP-DCIPVPENQYDFP---SAYLPISCGCNQFCTYCAVPYGRGRE 184 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SRSL +++E + G EI LGQN +++ GK + + +LL ++ + Sbjct: 185 KSRSLESILNEVSQRSKQGFKEIIYLGQNCDSY-GKDIGS---SLKELLELSAKKFPNLW 240 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 + TS+P ++ L++ D L Y +P+QSGSDRILK MNR+++ +YR I+ I Sbjct: 241 FKCITSYPSMITKELLETIASYDNLCNYFSIPMQSGSDRILKLMNRKYSVEQYRNSINMI 300 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + PD I+SDFIVGFPGET+ DF+ T++ +++ Y YS R TP S + + Sbjct: 301 REIIPDAVITSDFIVGFPGETEKDFQDTINAIEEFKYDTVNIAIYSKRPFTPASKFEDNI 360 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLN 441 KA+R L KK E ++F + ++++VLI + K+KG + R+ Q V+ Sbjct: 361 SYQEKAQRANILIKKAEEISLNFRKQYLNEVLDVLIRGEDKKKKGFISSRTKGHQIVIFK 420 Query: 442 SKNH-NIGDIIKVRITDVKISTLYGELV 468 +N + G KV IT V + GE V Sbjct: 421 KRNKLDQGLKTKVYITSVLSHYMMGEEV 448 >gi|325660993|ref|ZP_08149620.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae bacterium 4_1_37FAA] gi|325472500|gb|EGC75711.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae bacterium 4_1_37FAA] Length = 440 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 151/455 (33%), Positives = 242/455 (53%), Gaps = 31/455 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FV S GC N+ D+ M M S+GY+ V +AD+IV+NTC A E+ + Sbjct: 4 LFV-SLGCDKNLVDTEVMLGMLASRGYQMVEDESEADIIVINTCCFIHDAKEESIQTILE 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + LK KEG ++V GC+AQ +EI+ P V+ V+G +Y ++ + ++ A G Sbjct: 63 MSELK----KEGRLKALIVTGCLAQRYQQEIIDEIPEVDAVLGTTSYDKILDAVDEALEG 118 Query: 147 K---RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 ++ D D +RL G + A+L I EGCDK CT+C++P RG Sbjct: 119 HHYLKMTDIDALPTVDSKRLVTTGGHF-------AYLKIAEGCDKHCTYCIIPKIRGNFR 171 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S + Q+V EA++L + GV E+ L+ Q + GK L GEK + LL L +I G+ + Sbjct: 172 SVPMEQLVHEAQELAEQGVKELILVAQETTLY-GKDLYGEK-SLHKLLKELCKIAGIRWI 229 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R +P +++D LI+ + + YL LP+Q SD ILK M RR + + +II+++R Sbjct: 230 RVLYCYPEEITDELIQVMKEESKICHYLDLPIQHASDGILKRMGRRTSKAQLIEIIEKLR 289 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PDI + + I GFPGET++ MD VD++ + + F YSP TP + M +Q++ Sbjct: 290 REIPDITLRTTLITGFPGETEEQHEELMDFVDQMEFDRLGVFTYSPEEDTPAATMPDQIE 349 Query: 384 ENVKAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWL 435 E+VK +R Q +L E Q ++F A +G+ + V+IE ++ VGR+ P + Sbjct: 350 ESVKEDR----QAELMELQQDIAFEQAEDMIGREVLVMIEGKIADENAYVGRTYKDAPNV 405 Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 ++ + + + GD +V++T L GE+V Sbjct: 406 DGLIFVNTDEELMSGDFARVKVTGALEYDLIGEIV 440 >gi|258516358|ref|YP_003192580.1| RNA modification enzyme, MiaB family [Desulfotomaculum acetoxidans DSM 771] gi|257780063|gb|ACV63957.1| RNA modification enzyme, MiaB family [Desulfotomaculum acetoxidans DSM 771] Length = 435 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 142/446 (31%), Positives = 233/446 (52%), Gaps = 24/446 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V + GC++N Y++ + +F S+GY V+ + A + V+NTC + + K R Sbjct: 8 VATLGCKVNQYEAAAIVSLFRSKGYSEVDFTEPAGVYVINTCTVTHLSDRKS-------R 60 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L ++ + ++ V GC AQ E++ P V++VVG ++ +L+E + ++ Sbjct: 61 QLIRRAVRTNPEAVIAVTGCYAQTSPGELMSL-PEVDLVVGTSDRDKIVDLVEASSKAEK 119 Query: 149 V-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + D +E L G R R A+L IQEGC FC++C++PY RG SR Sbjct: 120 INAVADIEKACFYEELP-APAGQGRVR---AYLKIQEGCRNFCSYCIIPYARGPLRSRQP 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 V++EA L+ G EI L G A+ G+D K + + ++ L I GL RLR + Sbjct: 176 EAVLNEAESLLAAGFKEIVLTGIQTGAY---GVDLPAKTSLAAIVEKLLRISGLSRLRLS 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P D+S LI+ + P+LH+P+QSGSDR+LK M RR+T Y +I++ +R Sbjct: 233 SIEPNDLSPELIELILHSKIFCPHLHIPLQSGSDRVLKLMRRRYTTEGYAKILNNLREKM 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P++A+++D + GFPGET++DF + + + ++ FKYSPR GTP + +QVD V Sbjct: 293 PNLAVTTDIMAGFPGETEEDFEQALGFIKDMAFSGMHVFKYSPRRGTPAAGFPQQVDARV 352 Query: 387 KAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442 K + RL+ L ++L E ++ G + VL E+ +G G +P VV Sbjct: 353 KEQRSRRLIALGEQLTE---NYASKFAGLTLPVLAEQPFSGRGGCWEGLTPNYLRVVFAC 409 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 + G+II ++I I G ++ Sbjct: 410 LENLSGEIIDIKIEKTGIQYQTGIII 435 >gi|154686803|ref|YP_001421964.1| YqeV [Bacillus amyloliquefaciens FZB42] gi|154352654|gb|ABS74733.1| YqeV [Bacillus amyloliquefaciens FZB42] Length = 451 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 144/444 (32%), Positives = 238/444 (53%), Gaps = 21/444 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V++VVG Q ++ +E+ R ++ + Sbjct: 65 ----IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEQYREERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ FE L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKARVFEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + F+ LL L + ++GL R+R ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLRELDTRVEGLKRIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ D ++ +LH+P+QSGS+ +LK M R++T + +++++ P Sbjct: 233 IEASQITDEVIEVLDASDKIVRHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +A++SD IVGFPGET+++F T + + +++ F YS R GTP + M +QVDENVK Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVK 352 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 ER L+ L +L ++ S + V +II K E+G VG + VV Sbjct: 353 NERVHKLIALSDQLAKEYASDYEGEVLEIIPEEAFKESDEEGMFVGYTDNYMKVVFKGTE 412 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG ++KV+I G+ V Sbjct: 413 DVIGKLVKVKIQKAGYPYNEGQFV 436 >gi|206969427|ref|ZP_03230381.1| RNA modification enzyme, MiaB family [Bacillus cereus AH1134] gi|229180587|ref|ZP_04307929.1| hypothetical protein bcere0005_39320 [Bacillus cereus 172560W] gi|229192521|ref|ZP_04319483.1| hypothetical protein bcere0002_41730 [Bacillus cereus ATCC 10876] gi|206735115|gb|EDZ52283.1| RNA modification enzyme, MiaB family [Bacillus cereus AH1134] gi|228590945|gb|EEK48802.1| hypothetical protein bcere0002_41730 [Bacillus cereus ATCC 10876] gi|228603011|gb|EEK60490.1| hypothetical protein bcere0005_39320 [Bacillus cereus 172560W] Length = 450 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 139/432 (32%), Positives = 237/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVDGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + A G+++E++ E K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|254519873|ref|ZP_05131929.1| predicted protein [Clostridium sp. 7_2_43FAA] gi|226913622|gb|EEH98823.1| predicted protein [Clostridium sp. 7_2_43FAA] Length = 434 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 135/398 (33%), Positives = 224/398 (56%), Gaps = 18/398 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++NVY+S M + F +GYE V++ + AD+ V+NTC + +K + R R L Sbjct: 7 TLGCRVNVYESEAMAEKFIREGYEVVDASEAADVYVINTCTVTNMGDKKSRQIISRARRL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRV 149 + V V GC +Q +E+ P V+VV+G + + + +AR GK Sbjct: 67 NE-------NATVAVVGCYSQIAPKEV-SEIPGVDVVLGTRNKGDVVYYVNKARDEGKSQ 118 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V + +++K FE L+I + Y K AFL IQ+GC++FCT+C++PY+RG S+ Sbjct: 119 VHVEGVLKNKKFEELNIEE--YQDK--TRAFLKIQDGCNRFCTYCIIPYSRGSVCSKDPK 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLRYTT 267 +V++E KL ++G EI L G + ++ GLD E D++ + +++G+ R+R + Sbjct: 175 KVLEEVNKLAEHGFKEIILSGIHTASY---GLDLEGSVNLIDIIEEIEKVEGIERIRIGS 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P + +I+ L P+ HL +QSG D LK MNRR+TA EY ++ +R P Sbjct: 232 IEPAFFTPEVIEKIKKFKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYADSVNLLRETMP 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D++I++D IVGFPGET+++F T + + I + FKYSPR GT ++M +Q+D ++K Sbjct: 292 DVSITTDVIVGFPGETEEEFNETYEFLKNIKLTKTHVFKYSPRKGTKAADMQDQLDGSIK 351 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 +R L + + + F + +G+ ++ LIE K K Sbjct: 352 EKRSKLLIELSNKNEKEFIEKFIGKEMDALIEAEVKGK 389 >gi|228960578|ref|ZP_04122226.1| hypothetical protein bthur0005_40430 [Bacillus thuringiensis serovar pakistani str. T13001] gi|296504804|ref|YP_003666504.1| Fe-S oxidoreductase [Bacillus thuringiensis BMB171] gi|228799091|gb|EEM46060.1| hypothetical protein bthur0005_40430 [Bacillus thuringiensis serovar pakistani str. T13001] gi|296325856|gb|ADH08784.1| Fe-S oxidoreductase [Bacillus thuringiensis BMB171] Length = 450 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 139/432 (32%), Positives = 237/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + A G+++E++ E K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|160947755|ref|ZP_02094922.1| hypothetical protein PEPMIC_01690 [Parvimonas micra ATCC 33270] gi|158446889|gb|EDP23884.1| hypothetical protein PEPMIC_01690 [Parvimonas micra ATCC 33270] Length = 443 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 212/365 (58%), Gaps = 22/365 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++F +GYE N D D+ V+NTC + + K F+ R + L Sbjct: 15 TLGCKVNQYETEAMQELFKKRGYEICNENDICDVYVINTCTVTNLSDRKSRQFISRAKKL 74 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFG-- 146 D ++ V GC +Q +EI S I V+V++G + R+ EL E ++ Sbjct: 75 -------NKDAILAVVGCYSQVAPDEI---SAIEDVDVIIGTKNRARIVELCEESKKSNL 124 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K + ++ + + F+ LSI N++ A++ IQEGC+ FCT+C++PY RG SR Sbjct: 125 KFNIVSELTKDCGFDVLSI----ENQESKTRAYIKIQEGCNMFCTYCIIPYARGPIKSRP 180 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265 + + +EA KL +NG E+ + G +V ++ GLD G D++ LS I+ L R+R Sbjct: 181 IDDIYEEAVKLANNGYKEVIITGIHVGSY---GLDLGNDTRLIDVIEKLSTIENLDRIRL 237 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ +S+ + + + + HL +QSG D+ILK MNRR+TA YR+ + I+ + Sbjct: 238 SSIEAGIISEDFLIRLKNCKKVCEHFHLSLQSGCDKILKLMNRRYTADMYRKKVRMIKEI 297 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P++A+++D IVGFPGE D+DF+ T++ V +IG+++ FKYS R GTP + EQVD N Sbjct: 298 FPNVALTTDIIVGFPGENDEDFQETLNFVKEIGFSKIHVFKYSKRKGTPAFDFKEQVDGN 357 Query: 386 VKAER 390 VK R Sbjct: 358 VKKFR 362 >gi|328554278|gb|AEB24770.1| ribosomal protein S12 methylthiotransferase [Bacillus amyloliquefaciens TA208] gi|328912675|gb|AEB64271.1| ribosomal protein S12 methylthiotransferase [Bacillus amyloliquefaciens LL3] Length = 451 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 144/444 (32%), Positives = 237/444 (53%), Gaps = 21/444 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V++VVG Q ++ +E+ R ++ + Sbjct: 65 ----IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEQYREERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ FE L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKARVFEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + F+ LL L + ++GL R+R ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLRELDTRVEGLKRIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ D ++ +LH+P+QSGS+ +LK M R++T + +++++ P Sbjct: 233 IEASQITDEVIEVLDASDKIVRHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +A++SD IVGFPGET+++F T + + +++ F YS R GTP + M +QVDENVK Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVK 352 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 ER L+ L +L ++ S + V +II K E G VG + VV Sbjct: 353 NERVHKLIALSDQLAKEYASDYEGEVLEIIPEETFKESDEDGMFVGYTDNYMKVVFKGSE 412 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG ++KV+I G+ V Sbjct: 413 DLIGKLVKVKIQKAGYPYNEGQFV 436 >gi|228910147|ref|ZP_04073966.1| hypothetical protein bthur0013_42950 [Bacillus thuringiensis IBL 200] gi|228849430|gb|EEM94265.1| hypothetical protein bthur0013_42950 [Bacillus thuringiensis IBL 200] Length = 450 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 139/432 (32%), Positives = 237/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + A G+++E++ E K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|308174331|ref|YP_003921036.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus amyloliquefaciens DSM 7] gi|307607195|emb|CBI43566.1| ribosomal protein S12 methylthiotransferase [Bacillus amyloliquefaciens DSM 7] Length = 451 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 144/444 (32%), Positives = 237/444 (53%), Gaps = 21/444 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V++VVG Q ++ +E+ R ++ + Sbjct: 65 ----IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEQYREERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ FE L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKARVFEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + F+ LL L + ++GL R+R ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLRELDTRVEGLKRIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ D ++ +LH+P+QSGS+ +LK M R++T + +++++ P Sbjct: 233 IEASQITDEVIEVLDASDKIVRHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +A++SD IVGFPGET+++F T + + +++ F YS R GTP + M +QVDENVK Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVK 352 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 ER L+ L +L ++ S + V +II K E G VG + VV Sbjct: 353 NERVHKLIALSDQLAKEYASDYEGEVLEIIPEETFKESDEDGMFVGYTDNYMKVVFKGTE 412 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG ++KV+I G+ V Sbjct: 413 DLIGKLVKVKIQKAGYPYNEGQFV 436 >gi|149184079|ref|ZP_01862427.1| hypothetical protein BSG1_17550 [Bacillus sp. SG-1] gi|148848213|gb|EDL62515.1| hypothetical protein BSG1_17550 [Bacillus sp. SG-1] Length = 445 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 137/444 (30%), Positives = 245/444 (55%), Gaps = 21/444 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F QGYER+ + AD+ V+NTC + +K + R Sbjct: 11 TLGCKVNHYETEAIWQLFKEQGYERLEYENTADVYVINTCTVTNTGDKKSRQVIRRA--- 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V++VVG Q ++ E +E+ + ++ + Sbjct: 68 ----IRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRRKMLEYIEQFKEERQPI 122 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 123 NGVGNIMKNRVYEELQ-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSREPE 178 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL L E + GL R+R ++ Sbjct: 179 EVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLAMLLRDLEEKVDGLKRIRISS 235 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ + +++ +LH+P+QSGS+ +LK M R++T + + +++++ P Sbjct: 236 IEASQLTDEVIEVIDNSKLVVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLEKLKKALP 295 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +A++SD IVGFPGET+++F+ T + + + +++ F YS R GTP + M +Q+DE +K Sbjct: 296 GLAVTSDVIVGFPGETEEEFKETYNFIKEHKFSELHVFPYSKRTGTPAARMTDQIDEEIK 355 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 E RL+ L +L ++ S + V ++I + K + G VG + VV + Sbjct: 356 NERVHRLIELSNQLAKEYASQFEYEVLEVIPEEVYKEQPDSGLYVGYTDNYLKVVFPATE 415 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 +G ++KV++T G+ V Sbjct: 416 DMVGKLVKVKLTKAGYPFNEGQFV 439 >gi|118444753|ref|YP_878562.1| MiaB-like tRNA modifying enzyme [Clostridium novyi NT] gi|118135209|gb|ABK62253.1| MiaB-like tRNA modifying enzyme [Clostridium novyi NT] Length = 433 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 143/441 (32%), Positives = 237/441 (53%), Gaps = 17/441 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N+Y+S M + F GYE V + AD+ V+NTC + + +K L R + Sbjct: 7 TLGCRVNMYESEAMAEKFIKNGYEVVEFDEMADVYVVNTCTVTNMSDKKSRQMLSRAK-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-GKRV 149 ++ + ++ GC Q E++ + V+V++G + + + RA+ GK + Sbjct: 65 -----RKNPESIIAAVGCYTQIAPEKV-KEIGDVDVILGTRNKGDIVYWVNRAKEEGKTI 118 Query: 150 VD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V+ D KFE L+I + Y K AFL IQ+GC+ FC++C++P+ RG S++ Sbjct: 119 VEVNDVLRNKKFEELNIEE--YQDK--TRAFLKIQDGCNNFCSYCLIPFARGAVCSKNPE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++DE +KL +G EI L G +++++ G L+G+ + +L + EI G+ R+R + Sbjct: 175 IIIDEVKKLAAHGFKEIILSGIDISSY-GVDLEGDWNLLT-ILKKIDEIDGITRVRIGSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ IK G L L P+ HL +QSG + LK MNR++T E+ ++ +R D Sbjct: 233 GPEFFNEDRIKEIGKLKKLCPHFHLSLQSGCNETLKRMNRKYTTEEFENVVKLLRKYIKD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I+I++D IVGFPGET ++F T + + +I ++ FKYSPR GT M QVD N+K Sbjct: 293 ISITTDIIVGFPGETIEEFDETYEYLKRIELSKMHIFKYSPRTGTRAEKMENQVDGNIKE 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNI 447 ER L K + F D +G+ +EVL E+ K G G +P V+ SK Sbjct: 353 ERSKALIKLNEINEKKFIDKFIGEDMEVLYEQQCNNKEGYYEGYTPNYIKVISESKEDLS 412 Query: 448 GDIIKVRITDVKISTLYGELV 468 G I+ ++ + K G+++ Sbjct: 413 GKIVNTKLIETKDEYAVGKII 433 >gi|229174985|ref|ZP_04302504.1| hypothetical protein bcere0006_40680 [Bacillus cereus MM3] gi|228608446|gb|EEK65749.1| hypothetical protein bcere0006_40680 [Bacillus cereus MM3] Length = 450 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 139/432 (32%), Positives = 236/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + G+++E++ E K G KG VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDRKGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|326389860|ref|ZP_08211424.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter ethanolicus JW 200] gi|325994128|gb|EGD52556.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter ethanolicus JW 200] Length = 455 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 140/448 (31%), Positives = 241/448 (53%), Gaps = 37/448 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M ++F GYE V+ + AD+ V+NTC + ++ K + + R Sbjct: 29 GCKVNQYETEVMAELFKKAGYEVVDFNEKADVYVINTCTVTNRSDMKSRQEIRKAR---- 84 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 K+ D LVV AGC Q EE P V++ +G + ++ EL+E Sbjct: 85 ---KKNPDALVVAAGCYVQVSPEEAFS-LPEVDIAIGTKNKDKIVELVE----------- 129 Query: 153 DYSVEDKFERLSIVDGGYNRKR----GVTAF-------LTIQEGCDKFCTFCVVPYTRGI 201 K ++LS+V+ +K GVTA+ + IQ+GC+++CT+C++PY RG Sbjct: 130 --EFTQKNQKLSVVNNIMTQKEYEEFGVTAYTERTRAYIKIQDGCNQYCTYCIIPYARGP 187 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 SR +V+DE ++ D+G EI L G ++ ++ G D + D++ + EI G+ Sbjct: 188 VRSRDPKKVLDEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKMIHEIDGIK 244 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R ++ P +++ +K +L + + H+ +QSG D LK M RR+T EY+ +IDR Sbjct: 245 RIRLSSIEPTFLTEEFVKEIANLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDR 304 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R D+AI++D +VGFPGET+++F T V++I +++ FKYS R GT N Q Sbjct: 305 LREYIKDVAITTDVMVGFPGETEEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNFPNQ 364 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVL 440 V ++K +R L + + F ++ +G+ +EVL E+ K +G + G + SV + Sbjct: 365 VANHIKEDRSKKLIELSNRCEYKFMESFIGKTLEVLFEQPVKNMEGYVEGLTDNYLSVAV 424 Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGEL 467 + +I V+I ++K + L GE+ Sbjct: 425 KGDRKLLRNEIFPVKIKEIKDNLLIGEI 452 >gi|332981300|ref|YP_004462741.1| MiaB family RNA modification protein [Mahella australiensis 50-1 BON] gi|332698978|gb|AEE95919.1| RNA modification enzyme, MiaB family [Mahella australiensis 50-1 BON] Length = 443 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 135/430 (31%), Positives = 232/430 (53%), Gaps = 22/430 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S M +F GYE V +DAD+ V+NTC + + K R + Sbjct: 8 TLGCKVNQYESEAMVGLFRKAGYEIVPFEEDADVYVINTCTVTNISDRKS-------RQM 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFGKR 148 ++ + +V V GC Q +E+ S I V++++G + + EL+++A Sbjct: 61 IRRAVRRNPNAVVAVTGCYTQRAADEV---SSIEGVDLIIGTDERHNIVELVQKAHGADG 117 Query: 149 VVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++ + + FE + I D + R AF+ I++GCD++CT+C++PY RG SR+ Sbjct: 118 PINVVKDIRNVKSFEEIPI-DSYEGKTR---AFVKIEDGCDRYCTYCIIPYARGPVRSRA 173 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +VDE +L +G EI L G +V ++ ++++ +S G+ R+R + Sbjct: 174 PQDIVDEVSRLSQSGFKEIVLTGIHVASYGKDIGGIGLIDIIEMVHGIS---GIERIRLS 230 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P + + I +L + P+ H+ +QSG D +L+ M R +T Y+ I++R+R Sbjct: 231 SVEPMLLDNDFITRIKELPKVCPHFHISLQSGCDTVLRRMGRCYTTAVYKDIVNRLRKAI 290 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD+AI++D IVGFPGETD +F T+ V +I ++Q F YSPR GTP + + +QV ++ Sbjct: 291 PDVAITTDVIVGFPGETDGEFEQTLAFVKEIAFSQVHVFPYSPREGTPAAKLKDQVPPHI 350 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 K +R + + RE ++SF + +G+I+ VL E H E G G +P V++ S Sbjct: 351 KEQRSHMMLQMARELKMSFMRSYIGRIMPVLFE-HEIEDGYYEGLTPNYIRVLMPSDIDI 409 Query: 447 IGDIIKVRIT 456 G II V++ Sbjct: 410 SGRIINVQLN 419 >gi|83589452|ref|YP_429461.1| MiaB-like tRNA modifying enzyme [Moorella thermoacetica ATCC 39073] gi|83572366|gb|ABC18918.1| MiaB-like tRNA modifying enzyme [Moorella thermoacetica ATCC 39073] Length = 450 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 153/452 (33%), Positives = 235/452 (51%), Gaps = 32/452 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + S GC++N + ++ +F GY+ V ++AD+ V++TC + + K Sbjct: 5 RVALVSLGCKVNQNEVEALKHLFQEAGYQVVPFPEEADVYVVHTCTVTHISDRKS----- 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R L I+ + +V V GC AQ E+L P V++VVG + +RL EL+ RAR Sbjct: 60 --RQLIRRAIRANPEAVVAVTGCYAQVAPGEVLA-IPGVDLVVGTRDRHRLVELVARARE 116 Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G ++ + + FE L +V+ +R R AFL IQEGC +FCT+C+VPY RG Sbjct: 117 GTAPINAVRPHEKGETFEELPLVE--VSRAR---AFLKIQEGCQEFCTYCIVPYARGPLR 171 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + E R+L+D G EI L G + A+ G+ L G+ + LL +L ++ GL RL Sbjct: 172 SRDPELIRAEVRRLVDAGYLEIVLTGVHTGAY-GRDLAGD-IDLAGLLKNLVQVPGLRRL 229 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ P D + L ++ P+ H+P+QSG D IL M RR+T Y ++I +R Sbjct: 230 RISSIDPLDFTPELKAVLTGEGIICPHFHIPLQSGDDAILGRMGRRYTGQYYLELIASLR 289 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S RP A +SD +VGFPGET+ F+ T+ +V + A F YSPR GTP + M QV Sbjct: 290 SGRPGAAFTSDVMVGFPGETEAQFQNTLAVVKEASLAGIHVFPYSPRRGTPAAAMPGQVA 349 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS------ 437 VK +R L + R + + Q ++VL+E G L G P Q Sbjct: 350 AEVKKDRERRLLQLGRRLSRQYAREFLTQTLDVLVE------GPLPG-CPDCQEGLTGNY 402 Query: 438 --VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 V + G ++ VR+ +++ S ++G+L Sbjct: 403 LRVAFPAPADLTGQLVPVRLQELRGSLIWGKL 434 >gi|30022389|ref|NP_834020.1| Fe-S oxidoreductase [Bacillus cereus ATCC 14579] gi|218232497|ref|YP_002369119.1| hypothetical protein BCB4264_A4429 [Bacillus cereus B4264] gi|218899478|ref|YP_002447889.1| RNA modification enzyme, MiaB family [Bacillus cereus G9842] gi|228902835|ref|ZP_04066979.1| hypothetical protein bthur0014_40060 [Bacillus thuringiensis IBL 4222] gi|228954596|ref|ZP_04116620.1| hypothetical protein bthur0006_39650 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071815|ref|ZP_04205029.1| hypothetical protein bcere0025_39840 [Bacillus cereus F65185] gi|229081572|ref|ZP_04214069.1| hypothetical protein bcere0023_42040 [Bacillus cereus Rock4-2] gi|229129590|ref|ZP_04258559.1| hypothetical protein bcere0015_40320 [Bacillus cereus BDRD-Cer4] gi|229152512|ref|ZP_04280703.1| hypothetical protein bcere0011_40490 [Bacillus cereus m1550] gi|29897947|gb|AAP11221.1| Fe-S oxidoreductase [Bacillus cereus ATCC 14579] gi|218160454|gb|ACK60446.1| conserved hypothetical protein [Bacillus cereus B4264] gi|218544457|gb|ACK96851.1| RNA modification enzyme, MiaB family [Bacillus cereus G9842] gi|228630943|gb|EEK87581.1| hypothetical protein bcere0011_40490 [Bacillus cereus m1550] gi|228653858|gb|EEL09727.1| hypothetical protein bcere0015_40320 [Bacillus cereus BDRD-Cer4] gi|228701728|gb|EEL54217.1| hypothetical protein bcere0023_42040 [Bacillus cereus Rock4-2] gi|228711294|gb|EEL63255.1| hypothetical protein bcere0025_39840 [Bacillus cereus F65185] gi|228805042|gb|EEM51637.1| hypothetical protein bthur0006_39650 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228856791|gb|EEN01307.1| hypothetical protein bthur0014_40060 [Bacillus thuringiensis IBL 4222] Length = 450 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 139/432 (32%), Positives = 237/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + A G+++E++ E K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|188589299|ref|YP_001920259.1| hypothetical protein CLH_0864 [Clostridium botulinum E3 str. Alaska E43] gi|188499580|gb|ACD52716.1| conserved hypothetical protein [Clostridium botulinum E3 str. Alaska E43] Length = 434 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 140/430 (32%), Positives = 236/430 (54%), Gaps = 20/430 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M + F +GY + D AD+ V+NTC + +K + + R Sbjct: 7 TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKAR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV- 149 + + ++ V GC +Q EE+ + V+VV+G + + + +AR K + Sbjct: 65 -----RTNSNAIIAVVGCYSQIAPEEVSKIEG-VDVVLGTRNKGDIVYFVNKARDEKAIQ 118 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V + +++K FE L+I + Y K AFL IQ+GC++FCTFC++PY RG S+ Sbjct: 119 VSVNEVLKNKEFEELNIEE--YQDK--TRAFLKIQDGCNRFCTFCLIPYARGATCSKKPE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 +V++E +KL ++G E+ L G + ++ G+D G T LL + +I G+ R+R + Sbjct: 175 KVIEEVKKLAEHGFKEVILSGIHTASY---GVDLGAGVTLISLLEDIEKIDGIDRVRIGS 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P +D +I ++ L P+ HL +QSGSD LK MNRR+TA EY + + +R Sbjct: 232 IEPAFFTDEVINKIKNMKKLCPHFHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQ 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D++I++D IVGFPGET+++F T + + K+ + FKYSPR GT + M Q+D +K Sbjct: 292 DVSITTDLIVGFPGETEEEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQIDGTIK 351 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSP-WLQSVVLNSKNH 445 +R L + +E +V F VG+ + VLIE+ K G G + ++++ + ++ Sbjct: 352 DKRSKILSELNKENEVDFVKNLVGREMGVLIERECSNKPGIFEGYTKNYVKAEISDASKE 411 Query: 446 NIGDIIKVRI 455 IG I+ I Sbjct: 412 MIGKIMDCNI 421 >gi|228941477|ref|ZP_04104027.1| hypothetical protein bthur0008_41150 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974407|ref|ZP_04134975.1| hypothetical protein bthur0003_41610 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981002|ref|ZP_04141304.1| hypothetical protein bthur0002_41640 [Bacillus thuringiensis Bt407] gi|228778662|gb|EEM26927.1| hypothetical protein bthur0002_41640 [Bacillus thuringiensis Bt407] gi|228785243|gb|EEM33254.1| hypothetical protein bthur0003_41610 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818127|gb|EEM64202.1| hypothetical protein bthur0008_41150 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942093|gb|AEA17989.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar chinensis CT-43] Length = 450 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 139/432 (32%), Positives = 237/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + A G+++E++ E K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|291166122|gb|EFE28168.1| Fe-S oxidoreductase [Filifactor alocis ATCC 35896] Length = 424 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 137/390 (35%), Positives = 218/390 (55%), Gaps = 16/390 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ ME++F Y+ VN + AD+ V+NTC + + +K + R + + Sbjct: 2 TLGCKVNQYETEAMEELFLQNQYDLVNFDEIADVYVVNTCTVTAMSDKKSRQMIRRTKKI 61 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL-PELLERARFGKRV 149 + +VVV GC +Q EE+LR S VN+V+G + E+L + KR+ Sbjct: 62 -------NPNAIVVVTGCYSQKAPEEVLRISE-VNLVMGTSNRNMIIREVLRTSPEDKRI 113 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 V D FE ++I G + + AF+ IQ+GCD+FCT+C++P+TRG SRSL Sbjct: 114 VVDDIMKRKDFEEMNITTAGDHTR----AFVKIQDGCDRFCTYCIIPFTRGPVRSRSLEN 169 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 +V E +KL++NG E+ L G +V ++ G D +K T D++ LS I GL R+R ++ Sbjct: 170 IVYEVKKLVNNGYKEVVLTGIHVASY---GKDTKKETLIDVIERLSTIDGLERIRTSSVE 226 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P +++ +K ++ P+ HL +QSG ++ILK MNRR+TA EYR +++IR Sbjct: 227 PIIITEDFLKRVSQVEQFCPHFHLSLQSGCNKILKKMNRRYTAEEYRNAVEQIRKTYTYP 286 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 AI++D IVGFP E + DF T +++I + F YSPR GT E V + K Sbjct: 287 AITTDVIVGFPEEEESDFEETKKFLEEIKLYEMHVFPYSPREGTVAYERGETVTKEEKHV 346 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 R L + + F ++ +GQ++ VL E Sbjct: 347 RSNTLISISNQNKKEFMESQIGQVLPVLFE 376 >gi|169832193|ref|YP_001718175.1| MiaB-like tRNA modifying protein [Candidatus Desulforudis audaxviator MP104C] gi|169639037|gb|ACA60543.1| MiaB-like tRNA modifying enzyme [Candidatus Desulforudis audaxviator MP104C] Length = 450 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 146/450 (32%), Positives = 233/450 (51%), Gaps = 36/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + +F +GY+ + + AD+ V+NTC + + K R + Sbjct: 8 TLGCKVNQAETQGLAALFRDRGYKVIPFEETADVYVVNTCTVTREGDRKS-------RQV 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF----- 145 ++ + LVVV GC AQ EE P V++V+G R+ +L+E+A Sbjct: 61 VRRAVRANPEALVVVTGCYAQVAPEEA-GAIPGVSLVIGTSGRERIVDLVEQAAARCPVP 119 Query: 146 ------GKRVVDTDYSVEDKFERLS-IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 G + D +FE L D G R AF+ +QEGC FCT+C+VPY Sbjct: 120 AEKKGPGPFLAVGDIEQAREFEDLPGTADPGRTR-----AFIKVQEGCRDFCTYCIVPYA 174 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG SR +V++ AR L+D G E+ L G N+ A+ G+ L E L+ L I Sbjct: 175 RGPLRSRPPERVLELARGLVDRGYSELVLTGVNLGAY-GRDLGTE--NLPGLVRRLVRIP 231 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL RLR ++ P +++ L++A + V P+ H+P+QSGSD +L M RR++ E+ + Sbjct: 232 GLARLRLSSVEPNEITRELVEAVAENPVCAPHFHIPLQSGSDSVLSRMGRRYSTGEFTGL 291 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +D +R+ P++A+++D +VGFPGET + R +++ V +IG+A F YSPR GTP ++ Sbjct: 292 VDMVRARVPEVAVTADVMVGFPGETAAEHRESLEYVRRIGFAGLHVFVYSPRRGTPAASF 351 Query: 379 LEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 + V VK ER +L L ++LR++ F G+ +EVL+E G G +P Sbjct: 352 PDPVPYRVKKERSREMLALGRELRDR---FASRYRGRTVEVLVES--VSGGVASGYTPNY 406 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 V + G I+KV + L G Sbjct: 407 LRVFFKNGPELAGRIVKVYADGAEQGNLRG 436 >gi|227486728|ref|ZP_03917044.1| 2-methylthioadenine synthetase [Anaerococcus lactolyticus ATCC 51172] gi|227235316|gb|EEI85331.1| 2-methylthioadenine synthetase [Anaerococcus lactolyticus ATCC 51172] Length = 432 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 135/439 (30%), Positives = 238/439 (54%), Gaps = 18/439 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S +E++F ++G+ER ++A + V+NTC + + K + R R Sbjct: 9 TLGCKVNQYESEAVEEIFKARGFER--KENNASVYVINTCTVTNMSDRKSRQMISRAR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K+ D ++ V GC +Q + E++ + V++++G + + +L E K + Sbjct: 65 -----KDNPDAIIAVMGCYSQVKPEDVAKIEG-VDIILGSRNKEEVVDLCEDMLQNKEAI 118 Query: 151 DTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 D SV E FE L I N+ A++ IQ+GC+ +C++C++PY RG +SR + Sbjct: 119 DQVISVSEEKSFEDLEI----SNQTEMTRAYMKIQDGCNMYCSYCLIPYARGNVVSRPMD 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V EA +L +NG EI L G +V ++ DG + D++ +++++ G+ R+R ++ Sbjct: 175 SIVKEAERLAENGFKEIVLTGIHVASYGKDFKDG--ISLIDVIENVAKVDGIKRIRLSSM 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 PR ++ ++ + HL +QSGSD +L++MNR++ +++ D IR + P+ Sbjct: 233 EPRHITRDFLERMKATKKACDHFHLSLQSGSDDVLRAMNRKYDTKVFKEKTDLIREIFPN 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +++D IVGFPGET+ + + TM V +I +A+ FKYS R GT + M QVD NVK Sbjct: 293 AGLTTDIIVGFPGETEANHQETMAFVKEIKFAKTHLFKYSKRDGTRAATMKGQVDGNVKK 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 ERL L+ + + F + VG+ + VL E+ G G S V + + + Sbjct: 353 ERLKDLEAIEKTNREKFLENQVGKTLSVLFEEKSDMAGFKSGYSTNYLRVNVENPSLPTN 412 Query: 449 DIIKVRITDVKISTLYGEL 467 +I V+IT + L GE+ Sbjct: 413 EIYDVKITGLINDELIGEI 431 >gi|224008014|ref|XP_002292966.1| hypothetical protein THAPSDRAFT_263872 [Thalassiosira pseudonana CCMP1335] gi|220971092|gb|EED89427.1| hypothetical protein THAPSDRAFT_263872 [Thalassiosira pseudonana CCMP1335] Length = 494 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 152/450 (33%), Positives = 242/450 (53%), Gaps = 51/450 (11%) Query: 26 RFFVKSYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +F +K+YGCQMNV D+ + + F + + + AD+++ NTC IRE A KV+ L Sbjct: 2 KFHIKTYGCQMNVNDTDIVQSSLQFIETTDEIQ----ADILLTNTCAIRENAESKVWHRL 57 Query: 85 GRIRNL-KNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--- 139 +R+ +N + GD ++ V GC+A+ E++ + ++VVGP +Y LP L Sbjct: 58 RELRSHDRNYPLSSVGDERIIGVLGCMAERLKEDMFQDG-TADLVVGPDSYRDLPRLISV 116 Query: 140 LERARFG----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 L G +R V+ S+++ + + + N V+AF++I GC+ C++CVV Sbjct: 117 LNAPATGTLPTERAVNVQLSLDETYASIKPIRSNPN---DVSAFVSIMRGCNNMCSYCVV 173 Query: 196 PYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW-------RGKGL------- 240 P+TRG E SR L VVDE R+L++ G+ E+ LLGQNVN++ R K L Sbjct: 174 PFTRGRERSRGLENVVDETRRLVEEEGIKEVILLGQNVNSYHDIGDRKRKKQLVDDDKSY 233 Query: 241 --------------DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286 +G+ F DLL ++S + +R+R+T+ HP+D L+ + Sbjct: 234 QTSNPGFSNMFRLRNGDGHRFLDLLDAVSLLSPELRVRFTSPHPKDYPPPLLTLMAERPN 293 Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 + +LH+P QSGS +L+ M R +T Y ++ID +R + PD+AISSDFI GF GET+++ Sbjct: 294 ICSHLHMPAQSGSSSVLERMRRGYTREAYLELIDDVRRLIPDVAISSDFITGFCGETEEE 353 Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLR-EQQVS 404 + T+ L++++ + QAF F YS R T +E V VK RL + R E Q Sbjct: 354 HQDTLSLMEQVQFDQAFMFAYSMRGKTHAHRSMEDDVLPEVKQRRLNEVITVFRIEVQRR 413 Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 ++ VG++ VL+E G+ K G W Sbjct: 414 NDEVEVGKLRLVLVE--GEAKRSTPGNRAW 441 >gi|23099419|ref|NP_692885.1| hypothetical protein OB1964 [Oceanobacillus iheyensis HTE831] gi|22777648|dbj|BAC13920.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 450 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 141/433 (32%), Positives = 238/433 (54%), Gaps = 25/433 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + MF +GYERV+ ++D+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEGIWRMFKEEGYERVDFDHNSDVYVINTCTVTNSGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D +V V GC AQ EI+ P V++VVG Q + +E + K V Sbjct: 65 ----IRKNPDAVVCVTGCYAQTSPGEIME-IPGVDIVVGTQDRKNIFSYIEEHQKTKEPV 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ FE + V +R R A L IQEGC+ FCTFC++P++RG+ SR Sbjct: 120 NGVSNIMKNRVFEEMD-VPVFTDRTR---ASLKIQEGCNNFCTFCIIPWSRGLLRSRDPK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V+++A KL+ G E+ L G + G G D + F+ LL L E++GL R+R ++ Sbjct: 176 NVIEQATKLVKAGYKELVLTGIHT---AGYGEDMKDYNFAMLLRELEEVEGLERIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I + ++ +LH+P+QSGSD +L M R+++ Y++ +++++ P Sbjct: 233 EASQITDEVIDVIDQSNKIVRHLHVPLQSGSDSVLARMRRKYSTSFYKEKVNKLQKALPG 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +AI+SD IVGFPGET+++F+ T + +IGYA+ F +S R GTP + M QV++ +K Sbjct: 293 LAITSDVIVGFPGETEEEFQQTYSFIKEIGYAELHVFPFSRRTGTPAARMENQVEDPIKE 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVLNSK 443 +R L+ L +L ++ S + +++EV+ E+ E LVG + V Sbjct: 353 KRVHDLIALSDQLAKEYASRYE---NEVLEVIPEEQVDENQSNTLVGYTDNYMKVQFEGT 409 Query: 444 NHNIGDIIKVRIT 456 IG I+KV++T Sbjct: 410 PDLIGKIVKVKVT 422 >gi|78224396|ref|YP_386143.1| hypothetical protein Gmet_3205 [Geobacter metallireducens GS-15] gi|123729170|sp|Q39QQ6|RIMO_GEOMG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|78195651|gb|ABB33418.1| SSU ribosomal protein S12P methylthiotransferase [Geobacter metallireducens GS-15] Length = 445 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 149/449 (33%), Positives = 229/449 (51%), Gaps = 25/449 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRN 89 S GC N+ D+ M YE +AD+I++NTC I + E + + L Sbjct: 9 SLGCPKNLVDAEVMLGCLAKDQYEITTDEHEADIIIVNTCSFIGDAKKESIDTILDLADR 68 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--- 146 + R K L+VV GC+ Q EE+ P V++ VG Y R+ E++ R Sbjct: 69 KHDGRCK-----LLVVTGCLPQRYQEELATELPEVDIFVGTADYPRIAEIIAEKRGVAEQ 123 Query: 147 -KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + D +Y ++ RL TA+L I EGC C++CV+P RG SR Sbjct: 124 LRYISDPNYIFDESLPRL-------KSSPAYTAYLKIAEGCSNCCSYCVIPSLRGALRSR 176 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L ++ EAR L+ G EI L+ Q++ AW G+ L G T +L+ L++I GL +R Sbjct: 177 PLDNLLMEARTLVATGTREINLIAQDITAW-GRDLPGSP-TLEELVRELAKIVGLRWIRL 234 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P ++D LI+ + YL +P+Q SD +LK MNRR T + R +I +IR+ Sbjct: 235 LYAYPDGITDGLIEIIKTEPKVCKYLDIPIQHISDPVLKRMNRRSTEPQIRALIAKIRAE 294 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+IA+ + IVGFPGET++DFR + V++ + + F YS GTP + M +QV E Sbjct: 295 IPEIALRTSLIVGFPGETEEDFRTLLHYVEETQFDRLGVFCYSREEGTPAAGMEDQVSER 354 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ-SVV 439 VK +R L K N + EV++E + E KG+ ++P + V Sbjct: 355 VKRDRYKKLMKVQARLSFKRNRRLIDTEEEVIVEGYSDETDLLLKGRSSRQAPDIDGQVY 414 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + N N+GDI+++RITD L GE+V Sbjct: 415 ITAGNANVGDIVRLRITDSSDYDLIGEIV 443 >gi|89895872|ref|YP_519359.1| hypothetical protein DSY3126 [Desulfitobacterium hafniense Y51] gi|89335320|dbj|BAE84915.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 441 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 142/396 (35%), Positives = 227/396 (57%), Gaps = 16/396 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N +S + +F + GY V+S + AD++V+NTC + K + R+ Sbjct: 18 TLGCKVNQTESEALGQLFRNNGYHVVSSTEKADVVVVNTCTVTNTGGAKSRQTIRRM--- 74 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K D VVV GC AQ EIL + V++V+G Q ++ EL+++ + ++ Sbjct: 75 ----VKAHPDAFVVVMGCYAQTAPGEILGIAG-VDLVLGTQDRGKILELIDQVKKEQQPK 129 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ D FE L +++ +R R A L IQEGC++FCT+C++PY RG SR Sbjct: 130 SSVRTIWDAKTFEELPLIEE-ESRTR---ATLKIQEGCNQFCTYCIIPYARGPVRSRIPE 185 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V EA KL+ G EI L G + ++ G+ L GE + L+ +L++IKGL RLR ++ Sbjct: 186 NAVTEAEKLVAAGYKEIVLTGIHTGSY-GEDL-GEDWDLARLVKALAQIKGLHRLRLSSI 243 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P + + LI + + P+LH+P+Q GSD IL M R +T E++++I R+ S++P Sbjct: 244 EPMEFTPELIDVIINYPAVCPHLHIPLQCGSDAILTRMKRPYTVKEFKELIQRLTSLQPG 303 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 IAI++D IVGFPGET+ +F+ T++ V G++ F YS R GTP + EQ+ +K Sbjct: 304 IAITTDVIVGFPGETEQNFQETLETVRSCGFSGIHVFPYSKREGTPAAKYPEQIPNKIKE 363 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 ER+ L + RE Q + +GQ +EVLIE+ E Sbjct: 364 ERVKALLEVARESQEDYVRRFIGQRVEVLIERVSPE 399 >gi|218905447|ref|YP_002453281.1| RNA modification enzyme, MiaB family [Bacillus cereus AH820] gi|218535522|gb|ACK87920.1| RNA modification enzyme, MiaB family [Bacillus cereus AH820] Length = 450 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRXERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + G+++E++ E K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|220932113|ref|YP_002509021.1| MiaB-like tRNA modifying enzyme [Halothermothrix orenii H 168] gi|219993423|gb|ACL70026.1| MiaB-like tRNA modifying enzyme [Halothermothrix orenii H 168] Length = 438 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 139/434 (32%), Positives = 244/434 (56%), Gaps = 28/434 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M +F GY+ V+ D AD+ ++N+C + +AA K R L Sbjct: 9 TLGCKVNHYETEAMMGIFEEAGYKVVDFDDRADVYIINSCTVTNEAARKS-------RQL 61 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRV 149 ++ + +V + GC AQ +E+ ++ +++V+G + +L+E R G K V Sbjct: 62 ARKARRKNPEAVVALVGCYAQVSPDEV-KKIDAIDLVLGSDRRKDIVKLVEEVRTGGKEV 120 Query: 150 VDT-DYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D D+ +E L+I N+ + T A++ I+EGC++FC++C++PY RG SR Sbjct: 121 TDVKDFKKLTTYEDLNI-----NKVKETTRAYIKIEEGCNQFCSYCIIPYARGPVRSRKE 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 V+ E +L+ GV EI L G ++ A+ GLD +L+ +L ++KGL R+R + Sbjct: 176 ESVIQEVERLVRAGVKEIVLTGTHLGAY---GLDENNDKALVELIQNLVKVKGLARIRLS 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + +++D LI+ G D + P+LHLP+QSGS+ ILK M R +T E+++ +D+IR + Sbjct: 233 SLEVTEVNDDLIRIMGSEDKVCPHLHLPLQSGSNTILKKMKRPYTVEEFKETVDKIRKII 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 DIAI++D IVGFPGE +F + + V ++G+++ F +S R GTP + M QV +V Sbjct: 293 EDIAITTDIIVGFPGEGQKEFNESYNTVKELGFSRLHVFPFSIRQGTPAARMKNQVPGDV 352 Query: 387 KAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--RSPWLQSVVLN 441 K E ++ L KKL + + G + +V+IE + + L+ +++ ++ N Sbjct: 353 KKEYSKKMRELNKKL---MLEYQKRFWGHLRDVIIEDNRDSRTNLLTGVTGNYIKVMIEN 409 Query: 442 SKNHNIGDIIKVRI 455 + + G + KVR+ Sbjct: 410 ADDSLRGKMCKVRL 423 >gi|42783437|ref|NP_980684.1| hypothetical protein BCE_4391 [Bacillus cereus ATCC 10987] gi|206978420|ref|ZP_03239289.1| RNA modification enzyme, MiaB family [Bacillus cereus H3081.97] gi|217961800|ref|YP_002340370.1| RNA modification enzyme, MiaB family [Bacillus cereus AH187] gi|222097755|ref|YP_002531812.1| fe-s oxidoreductase [Bacillus cereus Q1] gi|229141048|ref|ZP_04269590.1| hypothetical protein bcere0013_41420 [Bacillus cereus BDRD-ST26] gi|229198438|ref|ZP_04325142.1| hypothetical protein bcere0001_39660 [Bacillus cereus m1293] gi|42739366|gb|AAS43292.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gi|206743376|gb|EDZ54814.1| RNA modification enzyme, MiaB family [Bacillus cereus H3081.97] gi|217065337|gb|ACJ79587.1| RNA modification enzyme, MiaB family [Bacillus cereus AH187] gi|221241813|gb|ACM14523.1| Fe-S oxidoreductase [Bacillus cereus Q1] gi|228584941|gb|EEK43055.1| hypothetical protein bcere0001_39660 [Bacillus cereus m1293] gi|228642326|gb|EEK98615.1| hypothetical protein bcere0013_41420 [Bacillus cereus BDRD-ST26] gi|324328214|gb|ADY23474.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 450 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVDGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + G+++E++ E K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|228923063|ref|ZP_04086355.1| hypothetical protein bthur0011_40430 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836561|gb|EEM81910.1| hypothetical protein bthur0011_40430 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 450 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + G+++E++ E K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASGFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|219670301|ref|YP_002460736.1| RNA modification enzyme, MiaB family [Desulfitobacterium hafniense DCB-2] gi|219540561|gb|ACL22300.1| RNA modification enzyme, MiaB family [Desulfitobacterium hafniense DCB-2] Length = 439 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 142/396 (35%), Positives = 227/396 (57%), Gaps = 16/396 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N +S + +F + GY V+S + AD++V+NTC + K + R+ Sbjct: 16 TLGCKVNQTESEALGQLFRNNGYHVVSSTEKADVVVVNTCTVTNTGGAKSRQTIRRM--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K D VVV GC AQ EIL + V++V+G Q ++ EL+++ + ++ Sbjct: 73 ----VKAHPDAFVVVMGCYAQTAPGEILGIAG-VDLVLGTQDRGKILELIDQVKKEQQPK 127 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ D FE L +++ +R R A L IQEGC++FCT+C++PY RG SR Sbjct: 128 SSVRTIWDAKTFEELPLIEE-ESRTR---ATLKIQEGCNQFCTYCIIPYARGPVRSRIPE 183 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V EA KL+ G EI L G + ++ G+ L GE + L+ +L++IKGL RLR ++ Sbjct: 184 NAVTEAEKLVAAGYKEIVLTGIHTGSY-GEDL-GEDWDLARLVKALAQIKGLHRLRLSSI 241 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P + + LI + + P+LH+P+Q GSD IL M R +T E++++I R+ S++P Sbjct: 242 EPMEFTPELIDVIINYPAVCPHLHIPLQCGSDAILTRMKRPYTVKEFKELIQRLTSLQPG 301 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 IAI++D IVGFPGET+ +F+ T++ V G++ F YS R GTP + EQ+ +K Sbjct: 302 IAITTDVIVGFPGETEQNFQETLETVRSCGFSGIHVFPYSKREGTPAAKYPEQIPNKIKE 361 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 ER+ L + RE Q + +GQ +EVLIE+ E Sbjct: 362 ERVKALLEVARESQEDYVRRFIGQRVEVLIERVSPE 397 >gi|172056823|ref|YP_001813283.1| RNA modification protein [Exiguobacterium sibiricum 255-15] gi|171989344|gb|ACB60266.1| RNA modification enzyme, MiaB family [Exiguobacterium sibiricum 255-15] Length = 444 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 146/445 (32%), Positives = 247/445 (55%), Gaps = 24/445 (5%) Query: 30 KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 ++ GC++N Y++ + +F GY RV+ D AD+ V+NTC + +K + R Sbjct: 7 QTLGCKVNHYETEAVWQLFKDAGYGRVDFADHADVYVVNTCTVTNTGDKKSRQVIRRA-- 64 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 I++ D ++ V GC AQ EI+ P V+VVVG Q +++ +E+ R + Sbjct: 65 -----IRQNPDSVICVTGCYAQTSPAEIMA-IPGVDVVVGTQDRHKMIGYIEQFREERMP 118 Query: 150 VDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 ++ ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 119 INAVGNIMKAKVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRQP 174 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 V+ +A++L+D G EI L G + G G D + + LL +L + GL RLR ++ Sbjct: 175 EDVLKQAQQLVDAGYKEIVLTGIHTG---GYGEDLKDYNLAKLLKALESVTGLERLRISS 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D ++ D +++ +LH+P+QSGSD +L+ M R++T E+ + I R++ V P Sbjct: 232 IEASQITDEVLDVLKDSPIVVRHLHVPIQSGSDTVLRRMRRKYTMAEFGKRITRLKEVLP 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D AI+SD IVGFPGET+++F T + ++ +++ F YS R GTP + M +QVDE VK Sbjct: 292 DCAITSDVIVGFPGETEEEFMETFNFINDHKFSELHVFPYSKRTGTPAAMMDDQVDEQVK 351 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSK 443 + RL+ L +L ++ S + G+++E++ E+ +E G+LVG + V + Sbjct: 352 EQRVARLIALSDQLAKEYASKYE---GELLEIIPEEFSEEAGGRLVGYTDNYLRVAIEGD 408 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 IG +++V+I+ G+ V Sbjct: 409 ESLIGQLVRVKISKAGYPMNDGQFV 433 >gi|228916942|ref|ZP_04080503.1| hypothetical protein bthur0012_41550 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|301055802|ref|YP_003794013.1| hypothetical protein BACI_c42790 [Bacillus anthracis CI] gi|228842663|gb|EEM87750.1| hypothetical protein bthur0012_41550 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300377971|gb|ADK06875.1| conserved hypothetical protein [Bacillus cereus biovar anthracis str. CI] Length = 450 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMETEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + G+++E++ E K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|47567875|ref|ZP_00238583.1| MiaB-like tRNA modifying enzyme [Bacillus cereus G9241] gi|49478605|ref|YP_038365.1| hypothetical protein BT9727_4047 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141194|ref|YP_085636.1| hypothetical protein BCZK4057 [Bacillus cereus E33L] gi|167634590|ref|ZP_02392910.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|170687423|ref|ZP_02878640.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|196034518|ref|ZP_03101927.1| RNA modification enzyme, MiaB family [Bacillus cereus W] gi|196039288|ref|ZP_03106594.1| RNA modification enzyme, MiaB family [Bacillus cereus NVH0597-99] gi|225866291|ref|YP_002751669.1| RNA modification enzyme, MiaB family [Bacillus cereus 03BB102] gi|228929354|ref|ZP_04092378.1| hypothetical protein bthur0010_40400 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935630|ref|ZP_04098444.1| hypothetical protein bthur0009_40760 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948023|ref|ZP_04110308.1| hypothetical protein bthur0007_41500 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987561|ref|ZP_04147679.1| hypothetical protein bthur0001_42320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229031959|ref|ZP_04187945.1| hypothetical protein bcere0028_40050 [Bacillus cereus AH1271] gi|229123849|ref|ZP_04253042.1| hypothetical protein bcere0016_41350 [Bacillus cereus 95/8201] gi|229157924|ref|ZP_04285997.1| hypothetical protein bcere0010_41050 [Bacillus cereus ATCC 4342] gi|254684067|ref|ZP_05147927.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis str. CNEVA-9066] gi|254721901|ref|ZP_05183690.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis str. A1055] gi|254741453|ref|ZP_05199140.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis str. Kruger B] gi|300118700|ref|ZP_07056428.1| RNA modification enzyme, MiaB family protein [Bacillus cereus SJ1] gi|47555552|gb|EAL13895.1| MiaB-like tRNA modifying enzyme [Bacillus cereus G9241] gi|49330161|gb|AAT60807.1| conserved hypothetical protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974663|gb|AAU16213.1| conserved hypothetical protein [Bacillus cereus E33L] gi|167530042|gb|EDR92777.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|170668618|gb|EDT19364.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|195993060|gb|EDX57019.1| RNA modification enzyme, MiaB family [Bacillus cereus W] gi|196029915|gb|EDX68516.1| RNA modification enzyme, MiaB family [Bacillus cereus NVH0597-99] gi|225790885|gb|ACO31102.1| RNA modification enzyme, MiaB family [Bacillus cereus 03BB102] gi|228625532|gb|EEK82286.1| hypothetical protein bcere0010_41050 [Bacillus cereus ATCC 4342] gi|228659563|gb|EEL15210.1| hypothetical protein bcere0016_41350 [Bacillus cereus 95/8201] gi|228729349|gb|EEL80340.1| hypothetical protein bcere0028_40050 [Bacillus cereus AH1271] gi|228772159|gb|EEM20607.1| hypothetical protein bthur0001_42320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228811609|gb|EEM57945.1| hypothetical protein bthur0007_41500 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823990|gb|EEM69808.1| hypothetical protein bthur0009_40760 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830305|gb|EEM75918.1| hypothetical protein bthur0010_40400 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|298723949|gb|EFI64663.1| RNA modification enzyme, MiaB family protein [Bacillus cereus SJ1] Length = 450 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + G+++E++ E K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|307266431|ref|ZP_07547967.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter wiegelii Rt8.B1] gi|306918539|gb|EFN48777.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter wiegelii Rt8.B1] Length = 455 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 140/448 (31%), Positives = 240/448 (53%), Gaps = 37/448 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M ++F GYE V+ + AD+ V+NTC + ++ K + + R Sbjct: 29 GCKVNQYETEVMAELFKKAGYEVVDFNEKADVYVINTCTVTNRSDMKSRQEIRKAR---- 84 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 K+ D LVV AGC Q EE P V++ +G + ++ EL+E Sbjct: 85 ---KKNPDALVVAAGCYVQVSPEEAFS-LPEVDIAIGTKNKDKIVELVE----------- 129 Query: 153 DYSVEDKFERLSIVDGGYNRKR----GVTAF-------LTIQEGCDKFCTFCVVPYTRGI 201 K ++LS+V+ +K GVTA+ + IQ+GC+++CT+C++PY RG Sbjct: 130 --EFTQKNQKLSVVNNIMTQKEYEEFGVTAYTERTRAYIKIQDGCNQYCTYCIIPYARGP 187 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 SR +V+DE ++ D+G EI L G ++ ++ G D + D++ + EI G+ Sbjct: 188 VRSRDPKKVLDEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKMIHEIDGIK 244 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R ++ P +++ +K +L + + H+ +QSG D LK M RR+T EY+ +IDR Sbjct: 245 RIRLSSIEPTFLTEEFVKEIANLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDR 304 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R D+AI++D +VGFPGET ++F T V++I +++ FKYS R GT N Q Sbjct: 305 LREYIKDVAITTDVMVGFPGETGEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNFPNQ 364 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVL 440 V ++K +R L + + F ++ +G+ +EVL E+ K +G + G + SV + Sbjct: 365 VANHIKEDRSKKLIELSNRCEYKFMESFIGKTLEVLFEQPVKNMEGYVEGLTDNYLSVAV 424 Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGEL 467 + +I V+I ++K + L GE+ Sbjct: 425 KGDRKLLRNEIFTVKIKEIKDNLLIGEI 452 >gi|229093380|ref|ZP_04224485.1| hypothetical protein bcere0021_41060 [Bacillus cereus Rock3-42] gi|228689974|gb|EEL43777.1| hypothetical protein bcere0021_41060 [Bacillus cereus Rock3-42] Length = 478 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + G+++E++ E K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|226312987|ref|YP_002772881.1| hypothetical protein BBR47_34000 [Brevibacillus brevis NBRC 100599] gi|226095935|dbj|BAH44377.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 448 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 146/453 (32%), Positives = 238/453 (52%), Gaps = 22/453 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + + GC+ N+ DS M + +GYE V++ ++A ++++NTC + A E+ + Sbjct: 9 EKVAIVTLGCEKNLVDSDMMAHLIDEKGYELVDNPEEATVVIVNTCGFIDAAKEESVN-- 66 Query: 85 GRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + L+ +KE G L +VVAGC+ Q E+IL P V+ +VG + + ++E + Sbjct: 67 ---KILEMGELKESGKLKSLVVAGCLTQRYKEDILNEIPEVDGIVGTGDFMSITGIIEES 123 Query: 144 RFGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 GKR V + ++ ED +R + G Y TA++ I EGCD CTFC +P RG Sbjct: 124 LEGKRPIFVGNPIFTYEDVVKR-KVKQGTY------TAYIKIAEGCDNACTFCSIPLMRG 176 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR++ +V+EAR L GV E++L+ Q+ + DG K +LL L+E++G+ Sbjct: 177 GFRSRTIESIVEEARHLAAQGVVEVSLIAQDSTNYGTDIYDG-KLMLPELLNRLAEVEGI 235 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++P +D LI + Y+ +P+Q D ILK M R + R ++ Sbjct: 236 EWIRLHYAYPGFFTDELIHTFATNPKVCKYVDMPLQHSEDHILKRMRRPGRQTDIRALVA 295 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +IR+ PD+A+ + IVGFPGET++DF + V I + + F YS TP S + + Sbjct: 296 KIRAQVPDVALRTSLIVGFPGETEEDFERLSEFVKDIRFDRLGVFTYSNEDDTPASRLPD 355 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ---- 436 VDE VK +R L + RE N VGQ+++VLIE++ VGR+ + Sbjct: 356 HVDEEVKEKRANMLMEIQREVAGDRNGRFVGQVLDVLIERYEGRNDIYVGRTQYDAPEID 415 Query: 437 -SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + +G ++KV+IT L GE+V Sbjct: 416 GEVFVTGFKGELGTVVKVKITHSYEYDLAGEVV 448 >gi|118479478|ref|YP_896629.1| 2-methylthioadenine synthetase [Bacillus thuringiensis str. Al Hakam] gi|229186550|ref|ZP_04313711.1| hypothetical protein bcere0004_40930 [Bacillus cereus BGSC 6E1] gi|118418703|gb|ABK87122.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|228596809|gb|EEK54468.1| hypothetical protein bcere0004_40930 [Bacillus cereus BGSC 6E1] Length = 450 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + G+++E++ E K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|311069144|ref|YP_003974067.1| YqeV protein [Bacillus atrophaeus 1942] gi|310869661|gb|ADP33136.1| YqeV [Bacillus atrophaeus 1942] Length = 451 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 144/447 (32%), Positives = 241/447 (53%), Gaps = 27/447 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEAGYERKEFEQAADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I+ D ++ V GC AQ EI+ P V++VVG Q ++ +E+ R ++ + Sbjct: 65 ----IRHNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEQYRQERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ FE L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKARVFEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + F+ LL L + + GL R+R ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLRELDARVDGLKRIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ D ++ +LH+P+QSGS+ +LK M R++T + +++++ P Sbjct: 233 IEASQITDEVIEVLDRSDKIVRHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +A++SD IVGFPGET+++F T D + + +++ F YS R GTP + M +QVDENVK Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYDFIKENRFSELHVFPYSKRTGTPAARMEDQVDENVK 352 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK---LVGRSPWLQSVVLN 441 ER L+ L +L ++ S + G+++E++ E+ KE + VG + VV Sbjct: 353 NERVHQLIALSDQLAKEYASDYE---GEVLEIIPEEAFKETNESNLFVGYTDNYMKVVFK 409 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++KV+I G+ V Sbjct: 410 GTEDLIGKLVKVKIEKAGYPYNEGQFV 436 >gi|229163255|ref|ZP_04291210.1| hypothetical protein bcere0009_40230 [Bacillus cereus R309803] gi|228620318|gb|EEK77189.1| hypothetical protein bcere0009_40230 [Bacillus cereus R309803] Length = 454 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/436 (32%), Positives = 240/436 (55%), Gaps = 29/436 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRQERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AE---RLLCLQKKLREQQVS-FNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVL 440 + RL+ L +L ++ S F D +++E++ E K G KG VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASQFED----EVLEIIPEEQFKEGDRKGLYVGYTDNYLKIVF 408 Query: 441 NSKNHNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 409 EGSEDLIGKLVKVKIT 424 >gi|197303019|ref|ZP_03168067.1| hypothetical protein RUMLAC_01746 [Ruminococcus lactaris ATCC 29176] gi|197297874|gb|EDY32426.1| hypothetical protein RUMLAC_01746 [Ruminococcus lactaris ATCC 29176] Length = 440 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 148/451 (32%), Positives = 239/451 (52%), Gaps = 30/451 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M + S+GYE + +AD+IV+NTC A E+ + + L Sbjct: 7 SLGCDKNLVDTEVMLGLLASKGYEMTDDEQEADIIVINTCCFIHDAKEESIQNILEMAEL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K KEG ++V GC+A+ +EIL P V+ V+G Y ++ + ++ A G + V Sbjct: 67 K----KEGKVKALIVTGCMAERYKDEILEEIPEVDEVLGTTAYDKILDAVDAALEGNQEV 122 Query: 151 ---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D D + +RL G + A+L I EGCDK CT+C++P RG S + Sbjct: 123 ILSDIDALPLPETKRLVTTGGHF-------AYLKIAEGCDKHCTYCIIPKVRGNYRSVPM 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++V+EAR+L + GV E+ L+ Q + GK L GEK + L+ L I G+ +R Sbjct: 176 ERLVNEARELAEQGVKELILVAQETTLY-GKDLYGEK-SLHKLVKELCNISGIRWIRILY 233 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P +++D LI+ + + YL LP+Q +D ILK M RR T E I++++RS P Sbjct: 234 CYPEEITDELIQVMKEEPKVCHYLDLPIQHANDTILKRMGRRTTKQELVHIVEKLRSEIP 293 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 DI + + I GFPGET + M VD++ + + F YSP TP + M EQ++E VK Sbjct: 294 DICLRTTLITGFPGETAEQHEELMQFVDEMEFDRLGVFTYSPEEDTPAAGMPEQIEEEVK 353 Query: 388 AERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439 +R Q ++ E Q+++F+ A +G+ + V+IE ++ VGR+ P + ++ Sbjct: 354 EDR----QAEIMELQQEIAFDKAEDMIGREVLVMIEGKVADENAYVGRTYRDAPNVDGLI 409 Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + + + GD +V++T L GEL+ Sbjct: 410 FINTDEELLSGDFARVKVTGALDYDLIGELL 440 >gi|229543808|ref|ZP_04432867.1| RNA modification enzyme, MiaB family [Bacillus coagulans 36D1] gi|229324947|gb|EEN90623.1| RNA modification enzyme, MiaB family [Bacillus coagulans 36D1] Length = 450 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 139/432 (32%), Positives = 236/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M +F GYER + +AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAMWQLFKKAGYERTDFETNADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D +V V GC AQ EIL P V+VVVG Q ++ +E+ ++ V Sbjct: 65 ----VRQNPDAVVCVTGCYAQTSPGEILE-IPGVDVVVGTQDRTKMLGYIEQYLKERKPV 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E + V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVKNIMKNRVYEEME-VPYFTDRHR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTT 267 +V+ +A+KL++ G E+ L G + G G D + + LL L E ++GL R+R ++ Sbjct: 176 KVIAQAQKLVNAGYKELVLTGIHTG---GYGQDLKDYNLAMLLKDLEEKVQGLKRVRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I V++ ++H+P+QSGSD +LK M R++T ++ + I +++ P Sbjct: 233 IEASQLTDEVIDVIKHSKVVVRHMHVPIQSGSDTVLKRMRRKYTMDQFAERITKLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +A++SD IVGFPGET+++F T + + + +A+ F YSPR GTP + M +Q+DE +K Sbjct: 293 GLALTSDVIVGFPGETEEEFMETYNFIKEHRFAELHVFPYSPRTGTPAARMKDQIDEEIK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 E R++ L +L ++ S + V ++I K E G G + VV + Sbjct: 353 NERVHRMIALSDQLAKEYASQFENEVLEVIPEEPFKEDPESGLYEGYTDNYLKVVFPATP 412 Query: 445 HNIGDIIKVRIT 456 +G ++KV+IT Sbjct: 413 DMVGKLVKVKIT 424 >gi|228993053|ref|ZP_04152976.1| hypothetical protein bpmyx0001_37900 [Bacillus pseudomycoides DSM 12442] gi|228999103|ref|ZP_04158685.1| hypothetical protein bmyco0003_36600 [Bacillus mycoides Rock3-17] gi|229006651|ref|ZP_04164285.1| hypothetical protein bmyco0002_35530 [Bacillus mycoides Rock1-4] gi|228754512|gb|EEM03923.1| hypothetical protein bmyco0002_35530 [Bacillus mycoides Rock1-4] gi|228760720|gb|EEM09684.1| hypothetical protein bmyco0003_36600 [Bacillus mycoides Rock3-17] gi|228766701|gb|EEM15341.1| hypothetical protein bpmyx0001_37900 [Bacillus pseudomycoides DSM 12442] Length = 450 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 138/432 (31%), Positives = 235/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIHQAQQLVDAGYKEIVLTGIHTG---GYGEDMKNYNLAGLLRDMEAEVNGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +Q+ E VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMDDQIPEEVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + G+++E++ E K G +G VG + VV Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEPFKDGDREGLYVGYTDNYLKVVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|189426248|ref|YP_001953425.1| MiaB-like tRNA modifying enzyme YliG [Geobacter lovleyi SZ] gi|238066235|sp|B3EAM2|RIMO_GEOLS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|189422507|gb|ACD96905.1| MiaB-like tRNA modifying enzyme YliG [Geobacter lovleyi SZ] Length = 449 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 156/460 (33%), Positives = 242/460 (52%), Gaps = 29/460 (6%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKV 80 + Q+ + S GC N+ D+ M + QGYE +AD+I++NTC I+E E V Sbjct: 4 LAKQKVSMVSLGCPKNLVDAEVMLGVLAQQGYEITMDEKEADVIIVNTCSFIKEAREESV 63 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 + L +L + R +G +VVAGC+ Q EE+ + P V++++G Y R+ E+L Sbjct: 64 DAIL----DLAD-RKSDGNCKTLVVAGCLPQRYQEELAKELPEVDILIGTGDYPRVAEIL 118 Query: 141 ERARFG----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 G K V D +Y ++ RL+ G Y A+L I EGC CT+CV+P Sbjct: 119 AEHHAGDAQIKYVGDPNYIYDEDLPRLNSSPGWY-------AYLKIGEGCSNCCTYCVIP 171 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 RG SR + +V EA +L+ GV E+ L+ Q++ + G +D + + + L+ L+ Sbjct: 172 SLRGPYRSRPVEALVAEAERLVKGGVRELILVSQDITRY-GSDMD-DTSSLAGLIRRLAA 229 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I+ L +R ++P +SD LI+ L YL +P+Q SD +L+ M RR + + R Sbjct: 230 IEDLKWIRLLYAYPDGISDELIELFKTEPKLCNYLDIPIQHISDNVLQRMKRRSSEEQIR 289 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +I R+R+ P I + + IVGFPGET DDF V+K + + F YS GTP + Sbjct: 290 TLIARLRNEIPGITLRTSLIVGFPGETVDDFLNLTQFVEKAQFDRLGVFCYSREEGTPAA 349 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKE-----KGKLV 429 M +QV E VK ER L K + +VSF N A VGQ +V++E + +E KG+ Sbjct: 350 EMPDQVSERVKRERHRKLMKT--QARVSFRRNRAMVGQTEQVIVEGYSEETELLLKGRTS 407 Query: 430 GRSPWLQ-SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++P + V + S + IGDI+ +ITD L E++ Sbjct: 408 RQAPDIDGQVYITSGHAEIGDIVACKITDSSDYDLVAEMI 447 >gi|15894568|ref|NP_347917.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824] gi|15024215|gb|AAK79257.1|AE007641_3 Fe-S oxidoreductases [Clostridium acetobutylicum ATCC 824] gi|325508700|gb|ADZ20336.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018] Length = 436 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/445 (32%), Positives = 242/445 (54%), Gaps = 23/445 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S M + F G+E V++ + AD V+NTC + K + R R Sbjct: 7 TLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMISRAR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT-----YYRLPELLERARF 145 K D ++ GC +Q E E++ V++V+G + +Y + ER + Sbjct: 65 -----KANKDAVIAAVGCYSQVEPEKVAEIEG-VDIVLGTKNKGDIIHYVNKFIEERNQI 118 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V D + KFE L+I D ++ R AFL IQ+GC++FC++C++PY RG S+ Sbjct: 119 ---VNVKDVFTDKKFEDLNI-DEYQDKTR---AFLKIQDGCNRFCSYCLIPYARGGVCSK 171 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +V+ E ++L ++G EI L G ++ ++ G L G+ S ++ +I G+ R+R Sbjct: 172 NPEKVIGEIKRLAEHGFKEIILSGIHIASY-GDDLKGDWNLIS-IIEKAEQIDGIERIRI 229 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 + PR + I ++ + P+ HL +QSG L+ MNR++TA EY++I+ ++R Sbjct: 230 GSIEPRFFDEDTISKIKNMKKMCPHFHLSLQSGCTETLERMNRKYTAEEYKEIVYKLREN 289 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 D++I++D IVGFPGETD++F T D + +I A+ FKYSPR GT + M Q++ N Sbjct: 290 ISDVSITTDVIVGFPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAMKNQINGN 349 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSKN 444 VK +R L + + + F + + ++VL EK +E L G +P VV+ S Sbjct: 350 VKDKRSAELIELDKINEKKFMSKFLDREMDVLFEKKLEENEDLYEGYTPNYIKVVVKSSE 409 Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469 I+KV++T+++ L GEL++ Sbjct: 410 DISRKILKVKLTEIQDEHLLGELIL 434 >gi|291563521|emb|CBL42337.1| SSU ribosomal protein S12P methylthiotransferase [butyrate-producing bacterium SS3/4] Length = 445 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 147/446 (32%), Positives = 228/446 (51%), Gaps = 24/446 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N+ D+ +M + +GY V+ ++AD++V+NTC I + E + + L Sbjct: 7 SLGCDKNLVDTEKMLGILGKEGYSFVDDENEADIVVVNTCCFIGDAKEESINTILQMAEL 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR- 148 KN R+K ++V GC+AQ +EI+ P V+ ++G +Y + + G+ Sbjct: 67 KKNGRLK-----ALIVTGCLAQRYKQEIIDEIPEVDAILGTTSYEAVGAAIREVMDGETP 121 Query: 149 --VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D V ERL G Y AFL I EGCDK CT+C++PY RG S Sbjct: 122 EIFESIDAPVSTATERLITTGGHY-------AFLKIAEGCDKRCTYCIIPYLRGKYRSVP 174 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + Q+V EA +L + GV E+ L+ Q + GK L GEK +LL L+ + G+ +R Sbjct: 175 MEQLVREAEELAEKGVKELILVAQETTLY-GKDLYGEK-KLPELLRRLAAVSGIQWIRLQ 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P +++D LI+ + + YL +P+Q SD +LK M RR E R +I ++R Sbjct: 233 YCYPEEITDELIETIKTEEKVCNYLDIPIQHASDAVLKRMGRRTNNKEIRGLIAKLRKEI 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDIA+ + I GFPGE ++D M VD + + + F YSP TP + QV E V Sbjct: 293 PDIALRTTLISGFPGEMEEDHEILMQFVDDMEFDRLGVFAYSPEEDTPAFSFENQVPEEV 352 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNS 442 K ERL + + +E ++A G+ +EV+IE ++ VGR SP + ++ + Sbjct: 353 KQERLDEIMELQQEIAFEKSEAMKGRTLEVMIEGKVADENAYVGRTYMDSPNVDGLIFVN 412 Query: 443 KNHNI--GDIIKVRITDVKISTLYGE 466 ++ GD +KVR+T L GE Sbjct: 413 TGLSLMSGDFLKVRVTGASEYDLIGE 438 >gi|229062008|ref|ZP_04199334.1| hypothetical protein bcere0026_40810 [Bacillus cereus AH603] gi|228717317|gb|EEL68990.1| hypothetical protein bcere0026_40810 [Bacillus cereus AH603] Length = 450 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 140/432 (32%), Positives = 237/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER +D+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D ++ + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKEYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + RL+ L +L ++ S + V +II K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASKFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|229086881|ref|ZP_04219040.1| hypothetical protein bcere0022_34550 [Bacillus cereus Rock3-44] gi|228696391|gb|EEL49217.1| hypothetical protein bcere0022_34550 [Bacillus cereus Rock3-44] Length = 450 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 138/432 (31%), Positives = 235/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIHQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVSGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +Q+ E VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQIPEEVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + G+++E++ E K G +G VG + VV Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEPFKDGDREGLYVGYTDNYLKVVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|260437149|ref|ZP_05790965.1| RNA modification enzyme, MiaB family [Butyrivibrio crossotus DSM 2876] gi|292810461|gb|EFF69666.1| RNA modification enzyme, MiaB family [Butyrivibrio crossotus DSM 2876] Length = 439 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 147/456 (32%), Positives = 244/456 (53%), Gaps = 31/456 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + S GC N+ DS M + +GYE ++ ++AD+IV+NTC A E+ + + Sbjct: 2 KLLFISLGCDKNLVDSEMMMGLLHDRGYEFTDNEEEADIIVINTCGFINDAKEESINTI- 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 L+ ++ KE ++VAGC+ + EIL+ P ++ +VG + ++ ++++ Sbjct: 61 ----LEMAKYKENNLKALIVAGCLVERYKNEILQELPEIDAIVGTTAFDKICDVVDDVLA 116 Query: 146 GKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K+ + + +R+ I GGY ++L I EGCDK CT+C +P RG Sbjct: 117 DKKHNELESINKMCRPDVKRI-ITTGGY------YSYLKIAEGCDKHCTYCSIPMIRGAY 169 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + ++V EA L DNGV E+ ++ Q + + GK L GEK +LL+ L +I G+ Sbjct: 170 RSVPMDELVKEAEYLADNGVKELIIVAQEITVY-GKDLYGEK-KLPELLHRLCKIPGIQW 227 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R +P +++D LI+ + Y+ +P+Q SD+ILK+M RR E R II ++ Sbjct: 228 IRLLYCYPEEITDELIETIRTEKKICHYIDMPIQHASDKILKAMGRRTNNVELRNIISKL 287 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PDI + + I GFPGET++D + +D +D++ + + F YSP T +++ QV Sbjct: 288 RKEIPDICLRTTLITGFPGETEEDHQILLDFIDEMEFDRLGVFTYSPEEDTKAASLDNQV 347 Query: 383 DENVKAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PW 434 DE VK LC + ++ E Q++S + + VG+ IEV+IE ++ VGRS P Sbjct: 348 DEEVK----LCRKDEIMELQQEISMDKSERLVGKEIEVIIEGKASDEDVYVGRSYMDAPS 403 Query: 435 LQS-VVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468 + V +NS+ + GD KVRI L G+L+ Sbjct: 404 VDGYVFINSEEELMSGDFAKVRIVKAMEYDLIGDLI 439 >gi|312144012|ref|YP_003995458.1| RNA modification enzyme, MiaB family [Halanaerobium sp. 'sapolanicus'] gi|311904663|gb|ADQ15104.1| RNA modification enzyme, MiaB family [Halanaerobium sp. 'sapolanicus'] Length = 440 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 135/407 (33%), Positives = 230/407 (56%), Gaps = 25/407 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + D+F +E V+ +AD+ ++N+C + +AA K R + Sbjct: 12 TLGCKVNQYETEAIIDIFLDNNFEIVDFSAEADVYIINSCTVTNQAASKSRKIARRAKRS 71 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N D LV V GC QA EE+ S I + ++G ++ +++ GK V Sbjct: 72 NN-------DSLVAVVGCYTQAFPEEVSSISEI-DFIMGSSNKSKIVNKVKKLLAGKNV- 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 D +++ E D R T A + I++GC++FC++C++PY RG SR Sbjct: 123 --DNEIKEYQELKDYEDLEIKRLSNTTRANIKIEDGCNQFCSYCIIPYARGPVRSREQKS 180 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +++E +K+I GV EI L G ++ A+ G D G K +DL+ L+E+ L RLR ++ Sbjct: 181 ILNEIKKMIGQGVKEIILTGTHLGAY---GTDKGNKTALTDLMQQLTELNNLQRLRLSSI 237 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++ +I + D+ P+LHLP+QSGS+ ILK+M R +TA E+++ I++IR+ PD Sbjct: 238 EGTEIDAKMIDLIAENDIFCPHLHLPLQSGSNEILKAMQRPYTAEEFKETINKIRAKIPD 297 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK- 387 IAI++D IVGFPGE + F+ T++LV ++ +++ F +S R GTP M +++ N+ Sbjct: 298 IAITTDIIVGFPGENEKTFKQTLELVKELKFSKIHVFPFSAREGTPAFKMDNKLNGNIIK 357 Query: 388 --AERLLCLQKKLREQ-QVSFNDACVGQIIEVLIEK-HGKEKGKLVG 430 +++L + K L E+ Q +F +GQ +VLIE+ ++ G L G Sbjct: 358 KFSKKLRFINKSLMEEYQANF----LGQNKKVLIEEARDQQTGFLTG 400 >gi|163942066|ref|YP_001646950.1| RNA modification protein [Bacillus weihenstephanensis KBAB4] gi|229013530|ref|ZP_04170664.1| hypothetical protein bmyco0001_39400 [Bacillus mycoides DSM 2048] gi|229169058|ref|ZP_04296774.1| hypothetical protein bcere0007_40100 [Bacillus cereus AH621] gi|163864263|gb|ABY45322.1| RNA modification enzyme, MiaB family [Bacillus weihenstephanensis KBAB4] gi|228614467|gb|EEK71576.1| hypothetical protein bcere0007_40100 [Bacillus cereus AH621] gi|228747767|gb|EEL97636.1| hypothetical protein bmyco0001_39400 [Bacillus mycoides DSM 2048] Length = 450 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 140/432 (32%), Positives = 237/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER +D+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D ++ + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKEYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + RL+ L +L ++ S + V +II K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASRFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|322421215|ref|YP_004200438.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. M18] gi|320127602|gb|ADW15162.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. M18] Length = 448 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 148/461 (32%), Positives = 246/461 (53%), Gaps = 33/461 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVY 81 + ++ + S GC N+ D+ M + YE AD+IV+NTC I+E E + Sbjct: 5 IKEKVSLVSLGCPKNLVDAEVMLGYLSKEAYEVTTDEMQADIIVVNTCSFIKEAKQESID 64 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140 + L ++R K L++V GC+ Q EE+ + P V++ +G Y R+ E++ Sbjct: 65 TILDLADRKHDARCK-----LLIVTGCLPQRYQEELAKELPEVDIFIGTGDYPRIAEIIA 119 Query: 141 ERARFGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 E+ G ++ D ++ D+ RL TA+L I EGC C +CV+P Sbjct: 120 EKKTTGNQLCYTGDPNFVYNDELPRL-------QSSPHYTAYLKIAEGCSNNCAYCVIPA 172 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG SR+ + +++EAR L+D GV E+ L+ Q++ A+ GK L ++ + L+ L+++ Sbjct: 173 LRGALRSRAFATLMNEARALVDAGVKELNLIAQDITAY-GKDL-PDQPSLELLVRELAKL 230 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +GL +R ++P ++D LI+ + + YL LP+Q +D +L M RR + R Sbjct: 231 EGLKWIRLLYAYPDGVTDSLIELIKNEPKVCKYLDLPIQHIADPVLSRMKRRSGEADIRA 290 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +I ++R PDIAI + IVGFPGET++DF+ + V++ + + F YS GTP + Sbjct: 291 LIAKLRKEIPDIAIRTSLIVGFPGETNEDFKKLLQFVEETRFDRLGVFCYSREEGTPAAE 350 Query: 378 MLEQVDENVKAERLLCLQKKLREQQ--VSF--NDACVGQIIEVLIEKHGKE-----KGKL 428 M +QV E +K ER KKL Q VSF N V +VL+E + +E KG+ Sbjct: 351 MPDQVSERIKRER----HKKLMRTQARVSFKHNRTLVDSEEDVLVEGYSEETELLLKGRS 406 Query: 429 VGRSPWLQSVV-LNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++P + +V + + N N+GDI++++ITD L GE++ Sbjct: 407 SRQAPDVDGLVYITAGNANVGDIVRLKITDSSDYDLIGEII 447 >gi|291522428|emb|CBK80721.1| SSU ribosomal protein S12P methylthiotransferase [Coprococcus catus GD/7] Length = 454 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 147/454 (32%), Positives = 239/454 (52%), Gaps = 28/454 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FFV S GC N+ DS M + + G+ V+ +AD+IV+NTC A E+ + Sbjct: 12 FFV-SLGCDKNLVDSEVMLGILRAHGFTLVDDEIEADIIVVNTCSFIHDAKEESIQTILE 70 Query: 87 IRNLKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K+S R K ++V GC+A+ +EI+ V+ V+G +Y + E++ Sbjct: 71 MAEMKHSCRCK-----ALIVTGCMAERYKDEIMTEIEEVDAVIGTTSYQHIAEVVAEVLE 125 Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++V D E +R+ + GGY +++L I EGCDK CT+C++P RG Sbjct: 126 GQKVKQFDDLQAMPEVDVQRI-MTTGGY------SSYLKIAEGCDKHCTYCIIPKLRGSY 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S S+ ++ +A L GV E+ ++ Q + +G+K +LL L I+GL Sbjct: 179 RSHSMDYLIKQAESLAAQGVKELNIVAQETTVYGTDLYNGQK-MLPELLKRLCRIEGLSW 237 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R +P ++++ LI+ + + YL LP+Q GSD +LK M RR T E R II R+ Sbjct: 238 IRVLYCYPEEINEELIQVIKEEPKICHYLDLPIQHGSDAVLKRMGRRTTQAELRSIIGRL 297 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PDIA+ + I GFPGET+ D + + V + + + F YS GTP + M +Q+ Sbjct: 298 REEIPDIALRTTLIAGFPGETEADHQEALQFVKDMRFDRLGVFTYSEEEGTPAAQMPDQI 357 Query: 383 DENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436 DE VK R L + +Q ++F+ + VG+ ++VLIE E+ +GR+ P + Sbjct: 358 DEAVKETRRDALM--MAQQAIAFDKSEEMVGKTVDVLIEGRLPEEDVYIGRTYRDAPDVD 415 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 V ++ GDI+KV+ITD + L G+++ Sbjct: 416 GYVFVHAEEDMISGDIVKVKITDAQDYDLVGDVI 449 >gi|166031237|ref|ZP_02234066.1| hypothetical protein DORFOR_00924 [Dorea formicigenerans ATCC 27755] gi|166029084|gb|EDR47841.1| hypothetical protein DORFOR_00924 [Dorea formicigenerans ATCC 27755] Length = 428 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 131/435 (30%), Positives = 239/435 (54%), Gaps = 29/435 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+++ GYE V + AD+ ++NTC + A K L + R + Sbjct: 11 GCKVNAYETEAMQELLEQNGYEIVPFKEGADVYIINTCTVTNIADRKSRQMLHKARKM-- 68 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-----RARFGK 147 D +VV GC QA GE+I P V++VVG L +L+ + + K Sbjct: 69 -----NPDAVVVATGCYVQARGEDI---DPCVDIVVGNNKKKDLIAILDEYYNAQHKVKK 120 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 ++D ++ E ++E + + + + A++ +Q+GC++FC++C++PY RG SR+L Sbjct: 121 ELLDINH--EKEYEEMQVTHTAEHTR----AYIKVQDGCNQFCSYCIIPYARGRVRSRNL 174 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 V++E R L +G E+ L G +++++ G+D GE + +L+ + EI G+ R+R Sbjct: 175 EHVLEEVRTLAASGYKEVVLTGIHLSSY---GIDTGE--SLLELIQKVHEIDGIKRIRLG 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + PR +++ + L + P+ HL +QSG + L+ MNRR++A EY + D +R Sbjct: 230 SLEPRIITEEFASSIAALPKMCPHFHLSLQSGCNATLRRMNRRYSAEEYMEKCDLLRKYF 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 + A+++D IVGFPGET ++F +MD VD++ + + FKYS R GT + M +Q+ E + Sbjct: 290 HNPALTTDVIVGFPGETQEEFAESMDFVDRVNFYETHIFKYSRRAGTKAAVMPDQIPEEI 349 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL--VGRSPWLQSVVLNSKN 444 K+ER + + +Q ++ + +G EVL+E+ + + + VG + + L ++ Sbjct: 350 KSERSAKMIELGHRKQKAYEERLLGTTQEVLMEEAVETEDGIYQVGHTKEYVKIGLKTEE 409 Query: 445 HNIGDIIKVRITDVK 459 + + V+I D K Sbjct: 410 NLSNQLKNVKIEDTK 424 >gi|329122066|ref|ZP_08250674.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus DSM 19965] gi|327466873|gb|EGF12389.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus DSM 19965] Length = 445 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 138/452 (30%), Positives = 239/452 (52%), Gaps = 17/452 (3%) Query: 19 DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78 +QC ++ + GC++N YDS M +F +GY+ V + AD+ ++NTC + Sbjct: 6 EQCKNTKKVSFITLGCKVNQYDSDAMRTLFIHRGYKPVEHSEVADVYIINTCSVTSIGDR 65 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 K + +IR + D ++ GC AQ EE L + V+V+VG Q ++ + Sbjct: 66 KSRQVIRKIR-------RNNPDAVIAATGCYAQVAPEE-LEKMGDVDVIVGHQNRNKIVD 117 Query: 139 LLERARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 +E A ++ V+ D ++E L++ G + R AF+ +QEGCD +CTFC++P Sbjct: 118 YIEEAEKSEKTVNAVKDIMSIREYENLTVDPEGEVKAR---AFVKVQEGCDNYCTFCIIP 174 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 Y RG SR VDE +KL++ G E+ L G ++ + GK L + S L+ L + Sbjct: 175 YARGRLKSRKQEDAVDEIKKLVEKGYREVVLTGIHLGNY-GKDLRN-GTSLSTLVSELLK 232 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I L+R+R + ++SD LI + + +LHLP+QSGSD +LKSMNR + +Y+ Sbjct: 233 IPNLLRIRLGSIESVELSDELINIIKNEKRVCHHLHLPLQSGSDAVLKSMNRHYRLRQYK 292 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +I +R P++A+++D IVGFPGET+++F+ T++ + ++ ++ F +S R GTP + Sbjct: 293 DLIAMLRKKIPNLALTTDLIVGFPGETEENFKETLNTLHELKFSAIHVFPFSKRTGTPAA 352 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 Q+ K +R+ +Q+ ++ F + +I+ VL E K++ G S Sbjct: 353 MYPNQITNEEKKKRVHRVQELEKKISKEFRCEFLNKIVHVLAE--NKKEEYFEGFSDEYI 410 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + +N G + V + +V L G ++ Sbjct: 411 RVTIKGENVKRGHLYSVIVEEVTDEGLIGRVI 442 >gi|322795992|gb|EFZ18616.1| hypothetical protein SINV_04486 [Solenopsis invicta] Length = 503 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 30/368 (8%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 + K YGCQMN D+ + + S GY+ ++DAD+++L TC IR+ A +K+++ L + Sbjct: 126 YFKIYGCQMNENDADIIWSVLKSHGYKHTQYLEDADIVLLITCAIRDNAEQKIWNKLENL 185 Query: 88 RNLKNSRIKE--GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 ++N +IK G + + + GC+A+ +IL R +V+V+ GP +Y LP LL Sbjct: 186 NGIRN-KIKRITGRSMKIGLLGCMAERLKTKILDRGKLVDVIAGPDSYKDLPRLLAVTD- 243 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + ++ S ++ + ++ + + A+++I GCD CT+C+VP+TRG E SR Sbjct: 244 NETAINVVLSFDETYADVTPIRLN---QDSTGAYVSIMRGCDNMCTYCIVPFTRGRERSR 300 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWR-----------------GKGLDG------ 242 ++ +++E R+L D GV EITLLGQNVN++R KG Sbjct: 301 PVASILEEVRQLSDQGVKEITLLGQNVNSYRDLSKSEFVLSVNTDTHLAKGFKTVYKNKK 360 Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 FSDLL +S I +R+R+T+ HP+D D ++ + + +HLP QSG+ I Sbjct: 361 GGLRFSDLLDQVSLINPEIRIRFTSPHPKDFPDEVLHLIAERPNICKQIHLPAQSGNSII 420 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L+ M R +T Y ++ IR + P+I SSDFI GF GET++ F+ T+ L++++ Y A Sbjct: 421 LERMRRGYTREAYLDLVYHIRDILPNINFSSDFIAGFCGETEEQFQDTLSLIEEVKYNCA 480 Query: 363 FSFKYSPR 370 + F YS R Sbjct: 481 YLFAYSMR 488 >gi|313891670|ref|ZP_07825277.1| tRNA methylthiotransferase YqeV [Dialister microaerophilus UPII 345-E] gi|313119948|gb|EFR43133.1| tRNA methylthiotransferase YqeV [Dialister microaerophilus UPII 345-E] Length = 445 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 138/452 (30%), Positives = 239/452 (52%), Gaps = 17/452 (3%) Query: 19 DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78 +QC ++ + GC++N YDS M +F +GY+ V + AD+ ++NTC + Sbjct: 6 EQCKNTKKVSFITLGCKVNQYDSDAMRTLFIHRGYKPVEHPEVADVYIINTCSVTSIGDR 65 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 K + +IR + D ++ GC AQ EE L + V+V+VG Q ++ + Sbjct: 66 KSRQVIRKIR-------RNNPDAVIAATGCYAQVAPEE-LEKMGDVDVIVGHQDRNKIVD 117 Query: 139 LLERARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 +E A ++ V+ D ++E L++ G + R AF+ +QEGCD +CTFC++P Sbjct: 118 YIEEAEKSEKTVNAVKDIMSIREYENLTVDPEGEVKAR---AFVKVQEGCDNYCTFCIIP 174 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 Y RG SR VDE +KL++ G E+ L G ++ + GK L + S L+ L + Sbjct: 175 YARGRLKSRKQEDAVDEIKKLVEKGYREVVLTGIHLGNY-GKDLRN-GTSLSTLVSELLK 232 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I L+R+R + ++SD LI + + +LHLP+QSGSD +LKSMNR + +Y+ Sbjct: 233 IPNLLRIRLGSIESVELSDELINIIKNEKRVCHHLHLPLQSGSDAVLKSMNRHYRLKQYK 292 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +I +R P++A+++D IVGFPGET+++F+ T++ + ++ ++ F +S R GTP + Sbjct: 293 DLIAMLREKIPNLALTTDLIVGFPGETEENFKETLNTLHELNFSAIHVFPFSKRTGTPAA 352 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 Q+ K +R+ +Q+ ++ F + +I+ VL E K++ G S Sbjct: 353 MYPNQITNEEKKKRVHRVQELEKKISKEFRCEFLNKIVHVLAE--NKKEEYFEGFSDEYI 410 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + +N G + V + +V L G ++ Sbjct: 411 RVTIKGENVKRGHLYSVIVEEVTDEGLIGRVI 442 >gi|229019534|ref|ZP_04176351.1| hypothetical protein bcere0030_40370 [Bacillus cereus AH1273] gi|229025776|ref|ZP_04182175.1| hypothetical protein bcere0029_40670 [Bacillus cereus AH1272] gi|228735484|gb|EEL86080.1| hypothetical protein bcere0029_40670 [Bacillus cereus AH1272] gi|228741790|gb|EEL91973.1| hypothetical protein bcere0030_40370 [Bacillus cereus AH1273] Length = 450 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 137/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER +D+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + G+++E++ E K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 DLIGKLVKVKIT 424 >gi|229075984|ref|ZP_04208957.1| hypothetical protein bcere0024_40230 [Bacillus cereus Rock4-18] gi|229104941|ref|ZP_04235597.1| hypothetical protein bcere0019_40790 [Bacillus cereus Rock3-28] gi|229117807|ref|ZP_04247171.1| hypothetical protein bcere0017_40780 [Bacillus cereus Rock1-3] gi|228665604|gb|EEL21082.1| hypothetical protein bcere0017_40780 [Bacillus cereus Rock1-3] gi|228678435|gb|EEL32656.1| hypothetical protein bcere0019_40790 [Bacillus cereus Rock3-28] gi|228707096|gb|EEL59296.1| hypothetical protein bcere0024_40230 [Bacillus cereus Rock4-18] Length = 450 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 137/432 (31%), Positives = 236/432 (54%), Gaps = 21/432 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER +D+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + G+++E++ E K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 413 ELIGKLVKVKIT 424 >gi|256545382|ref|ZP_05472745.1| Fe-S oxidoreductase [Anaerococcus vaginalis ATCC 51170] gi|256398943|gb|EEU12557.1| Fe-S oxidoreductase [Anaerococcus vaginalis ATCC 51170] Length = 432 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 138/449 (30%), Positives = 247/449 (55%), Gaps = 21/449 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + + F +K+ GC++N Y+S +E++F +G+E+ ++AD+ V+NTC + + K Sbjct: 1 MKKTFNIKTLGCKVNQYESEAIEELFKKRGFEK--KEENADIYVINTCTVTNMSDRKSRQ 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + + R KE D ++ V GC +Q + +E+ ++ V++++G + + +L E Sbjct: 59 TISKAR-------KENKDAVIAVIGCYSQVKADEV-KKIDGVDIILGSRNKEEVVDLCEN 110 Query: 143 -ARFGKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + +++ D + +S+ + E L I N+ A++ IQ+GC+ +C++C++PY RG Sbjct: 111 FIKNNEKMEDVEEFSIGEAIEDLEIS----NQADMTRAYIKIQDGCNMYCSYCLIPYARG 166 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR L ++DEA++L DNG EI L G +V ++ GK D + + D++ +++I G+ Sbjct: 167 NIASRDLVSIIDEAKRLRDNGYKEIVLTGIHVASY-GKDFDLD-ISLIDVIEHIAKIDGI 224 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R ++ PR + +K D + HL +QSGSD +LK MNR++T +++ +D Sbjct: 225 ERIRLSSMEPRHIDREFLKRMKDTKKACDHFHLSLQSGSDDVLKLMNRKYTTKVFKEKVD 284 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR P+ +++D IVGFP E++ + T + V I +++ FKYS R GT ++M Sbjct: 285 LIREYFPNAGLTTDIIVGFPNESEKNHEETKNFVKDIKFSKTHLFKYSKRDGTKAASMKN 344 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 QVD N+K R L + +E F D +G+ + VL E + G G S V Sbjct: 345 QVDGNIKKRRSKELSEIEKEISHEFLDKQIGKTLSVLFETKTELDGYRSGYSTNYLRV-- 402 Query: 441 NSKNH-NIGDIIKVRITDVKISTLYGELV 468 +SK+ I +I V+IT L G++V Sbjct: 403 HSKDRVEINEIKNVKITQRIDDYLIGDIV 431 >gi|167037786|ref|YP_001665364.1| MiaB-like tRNA modifying protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166856620|gb|ABY95028.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 467 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 138/448 (30%), Positives = 240/448 (53%), Gaps = 37/448 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M ++F GYE V+ + AD+ V+NTC + ++ K + + R Sbjct: 41 GCKVNQYETEVMAELFKKAGYEVVDFNEKADVYVINTCTVTNRSDMKSRQEIRKAR---- 96 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 K+ D LVV GC Q EE P V++ +G + ++ EL+E Sbjct: 97 ---KKNPDALVVAVGCYVQVSPEEAFS-LPEVDIAIGTKNKDKIVELVE----------- 141 Query: 153 DYSVEDKFERLSIVDGGYNRKR----GVTAF-------LTIQEGCDKFCTFCVVPYTRGI 201 K ++LS+V+ +K GVTA+ + IQ+GC+++CT+C++PY RG Sbjct: 142 --EFTQKNQKLSVVNNIMTQKEYEEFGVTAYTERTRAYIKIQDGCNQYCTYCIIPYARGP 199 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 SR +V+DE ++ D+G EI L G ++ ++ G D + D++ + EI G+ Sbjct: 200 VRSRDPKKVLDEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKMIHEIDGIK 256 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R ++ P +++ +K +L + + H+ +QSG D LK M RR+T EY+ +IDR Sbjct: 257 RIRLSSIEPTFLTEEFVKEIANLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDR 316 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R D+AI++D +VGFPGET+++F T V++I +++ FKYS R GT N Q Sbjct: 317 LREYIKDVAITTDVMVGFPGETEEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNFPNQ 376 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVL 440 V ++K +R L + + F ++ +G+ +EVL E+ K +G + G + S+ + Sbjct: 377 VANHIKEDRSKKLIELSNRCEYKFMESFIGKTLEVLFEQPVKNMEGYVEGLTDNYLSIAV 436 Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGEL 467 + +I V+I ++K + L GE+ Sbjct: 437 KGDIKLLRNEIFPVKIKEIKDNFLIGEI 464 >gi|256751980|ref|ZP_05492850.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter ethanolicus CCSD1] gi|320116201|ref|YP_004186360.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|256749185|gb|EEU62219.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter ethanolicus CCSD1] gi|319929292|gb|ADV79977.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 455 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 138/448 (30%), Positives = 240/448 (53%), Gaps = 37/448 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M ++F GYE V+ + AD+ V+NTC + ++ K + + R Sbjct: 29 GCKVNQYETEVMAELFKKAGYEVVDFNEKADVYVINTCTVTNRSDMKSRQEIRKAR---- 84 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 K+ D LVV GC Q EE P V++ +G + ++ EL+E Sbjct: 85 ---KKNPDALVVAVGCYVQVSPEEAFSL-PEVDIAIGTKNKDKIVELVE----------- 129 Query: 153 DYSVEDKFERLSIVDGGYNRKR----GVTAF-------LTIQEGCDKFCTFCVVPYTRGI 201 K ++LS+V+ +K GVTA+ + IQ+GC+++CT+C++PY RG Sbjct: 130 --EFTQKNQKLSVVNNIMTQKEYEEFGVTAYTERTRAYIKIQDGCNQYCTYCIIPYARGP 187 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 SR +V+DE ++ D+G EI L G ++ ++ G D + D++ + EI G+ Sbjct: 188 VRSRDPKKVLDEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKMIHEIDGIK 244 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R ++ P +++ +K +L + + H+ +QSG D LK M RR+T EY+ +IDR Sbjct: 245 RIRLSSIEPTFLTEEFVKEIANLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDR 304 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R D+AI++D +VGFPGET+++F T V++I +++ FKYS R GT N Q Sbjct: 305 LREYIKDVAITTDVMVGFPGETEEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNFPNQ 364 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVL 440 V ++K +R L + + F ++ +G+ +EVL E+ K +G + G + S+ + Sbjct: 365 VANHIKEDRSKKLIELSNRCEYKFMESFIGKTLEVLFEQPVKNMEGYVEGLTDNYLSIAV 424 Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGEL 467 + +I V+I ++K + L GE+ Sbjct: 425 KGDIKLLRNEIFPVKIKEIKDNFLIGEI 452 >gi|30264381|ref|NP_846758.1| hypothetical protein BA_4535 [Bacillus anthracis str. Ames] gi|47529832|ref|YP_021181.1| hypothetical protein GBAA_4535 [Bacillus anthracis str. 'Ames Ancestor'] gi|49187205|ref|YP_030457.1| hypothetical protein BAS4209 [Bacillus anthracis str. Sterne] gi|65321683|ref|ZP_00394642.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str. A2012] gi|165872059|ref|ZP_02216699.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167638687|ref|ZP_02396963.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170707478|ref|ZP_02897932.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|177653235|ref|ZP_02935487.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190566951|ref|ZP_03019867.1| RNA modification enzyme, MiaB family [Bacillus anthracis Tsiankovskii-I] gi|227817086|ref|YP_002817095.1| RNA modification enzyme, MiaB family [Bacillus anthracis str. CDC 684] gi|229600003|ref|YP_002868599.1| RNA modification enzyme, MiaB family [Bacillus anthracis str. A0248] gi|254736415|ref|ZP_05194121.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis str. Western North America USA6153] gi|254750891|ref|ZP_05202930.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis str. Vollum] gi|254757781|ref|ZP_05209808.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis str. Australia 94] gi|30259039|gb|AAP28244.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gi|47504980|gb|AAT33656.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49181132|gb|AAT56508.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|164712190|gb|EDR17727.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167513535|gb|EDR88905.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170127722|gb|EDS96595.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|172081517|gb|EDT66589.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190561942|gb|EDV15911.1| RNA modification enzyme, MiaB family [Bacillus anthracis Tsiankovskii-I] gi|227006018|gb|ACP15761.1| RNA modification enzyme, MiaB family [Bacillus anthracis str. CDC 684] gi|229264411|gb|ACQ46048.1| RNA modification enzyme, MiaB family [Bacillus anthracis str. A0248] Length = 450 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 137/431 (31%), Positives = 235/431 (54%), Gaps = 21/431 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKN 444 +R+ L + + + G+++E++ E K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSE 412 Query: 445 HNIGDIIKVRI 455 IG ++KV+I Sbjct: 413 ELIGKLVKVKI 423 >gi|238927738|ref|ZP_04659498.1| 2-methylthioadenine synthetase [Selenomonas flueggei ATCC 43531] gi|238884454|gb|EEQ48092.1| 2-methylthioadenine synthetase [Selenomonas flueggei ATCC 43531] Length = 519 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 137/403 (33%), Positives = 215/403 (53%), Gaps = 20/403 (4%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 +C V F + GC++N +++ ME +F ++GYE V + AD+ V+NTC + + K Sbjct: 88 RCAVRAAFM--TLGCKVNQFETETMEGLFRARGYEIVPFEERADVYVINTCSVTHLSDRK 145 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 + R + + + VAGC AQ EE+ R V VV+G + R+ + Sbjct: 146 SRQIIRRAARMNPT-------ACIAVAGCYAQVSPEEV-RGLEGVRVVIGTEERARIVDY 197 Query: 140 LERARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 +E A VV+ TD FE + + G +R R AFL I++GC FC+FC++PY Sbjct: 198 VEEALHADGVVEEITDVMQARAFEDIPL-HGVPHRTR---AFLKIEDGCQNFCSFCIIPY 253 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSE 256 RG SR L+ V E KL G E+ L G ++ A+ G+D ++ T +D + Sbjct: 254 ARGPVKSRPLAAVAREMEKLAAAGFREVVLTGIHLGAY---GIDLPQRPTLADACRTALR 310 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 K + RLR + ++S+ L+ P+LHLP+Q+GSD +L++MNRR+ + Sbjct: 311 TKEVRRLRLGSLESVELSEDLLSLVRTEPRFAPHLHLPLQAGSDNVLRAMNRRYDTAAFA 370 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 Q++ +R P AIS+D IVGFPGET++DF A +D V +G+A+ F YS R GTP + Sbjct: 371 QLLADVRRAVPGAAISTDIIVGFPGETEEDFTAGLDFVRAMGFARMHVFPYSARRGTPAA 430 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 +Q+ V+ ER +Q E +++ A +G + EVL E Sbjct: 431 RRTDQIAPPVRRERAARMQALAEEMAEAYHRAALGTVDEVLFE 473 >gi|229098781|ref|ZP_04229719.1| hypothetical protein bcere0020_40070 [Bacillus cereus Rock3-29] gi|228684625|gb|EEL38565.1| hypothetical protein bcere0020_40070 [Bacillus cereus Rock3-29] Length = 450 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 140/435 (32%), Positives = 240/435 (55%), Gaps = 27/435 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER +D+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ + Sbjct: 65 ----VRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVRNIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL + +E+ GL RLR ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDIKDYNLAGLLRDMEAEVGGLKRLRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P Sbjct: 233 IEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +AI+SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK Sbjct: 293 GLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLN 441 + RL+ L +L ++ S + G+++E++ E K G +G VG + +V Sbjct: 353 NDRVHRLIELSNQLAKEYASRFE---GEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFE 409 Query: 442 SKNHNIGDIIKVRIT 456 IG ++KV+IT Sbjct: 410 GSEELIGKLVKVKIT 424 >gi|52081091|ref|YP_079882.1| hypothetical protein BL02101 [Bacillus licheniformis ATCC 14580] gi|52786470|ref|YP_092299.1| YqeV [Bacillus licheniformis ATCC 14580] gi|319644951|ref|ZP_07999184.1| hypothetical protein HMPREF1012_00217 [Bacillus sp. BT1B_CT2] gi|52004302|gb|AAU24244.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|52348972|gb|AAU41606.1| YqeV [Bacillus licheniformis ATCC 14580] gi|317392760|gb|EFV73554.1| hypothetical protein HMPREF1012_00217 [Bacillus sp. BT1B_CT2] Length = 451 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 142/434 (32%), Positives = 238/434 (54%), Gaps = 27/434 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEAGYERKEFESSADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V++VVG Q ++ +++ + ++ + Sbjct: 65 ----IRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIKQYQEERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ FE L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVSNIMKARVFEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + F+ LL L S +KGL R+R ++ Sbjct: 176 EVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAQLLKELDSRVKGLKRIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ D ++ +LH+P+QSGS+ +LK M R++T + + +++ P Sbjct: 233 IEASQITDEVIEVLDRSDKIVRHLHIPLQSGSNSVLKRMRRKYTMEFFADRLTKLKKALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +A++SD IVGFPGET+++F T + + + +++ F YS R GTP + M QVDENVK Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMDGQVDENVK 352 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK---LVGRSPWLQSVVLN 441 ER L+ L +L ++ S + G ++E++ E+ E G+ LVG + VV Sbjct: 353 NERVHKLIALSDQLAKEYASDYE---GDVLEIIPEEPFTETGEGNLLVGYTDNYIKVVFE 409 Query: 442 SKNHNIGDIIKVRI 455 IG ++KV+I Sbjct: 410 GSEDLIGQLVKVKI 423 >gi|325262830|ref|ZP_08129566.1| 2-methylthioadenine synthetase [Clostridium sp. D5] gi|324031924|gb|EGB93203.1| 2-methylthioadenine synthetase [Clostridium sp. D5] Length = 440 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 139/445 (31%), Positives = 245/445 (55%), Gaps = 40/445 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M++M GYE V + AD+ ++NTC + A K L R R + Sbjct: 10 GCKVNAYETEAMQEMLEKAGYEIVPFKEGADIYIINTCTVTNIADRKSRQMLHRARRMNP 69 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL----------ER 142 + + VV AGC QA+ EE P +++V+G L ++L E Sbjct: 70 AAV-------VVAAGCYVQAQ-EEKQEVDPCIDIVIGNNKKQDLLKILQEYENEHAEKEA 121 Query: 143 ARFG----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 AR + ++D +++ E + RLS G + R A++ +Q+GC++FC++C++P+ Sbjct: 122 ARPNAVSVREMLDINHTKEYEPLRLSKT-GEHTR-----AYIKVQDGCNQFCSYCIIPFA 175 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEI 257 RG SR+ + V++E R+L +NG E+ L G +++++ G+D E+ + L+ ++ E+ Sbjct: 176 RGRVRSRAKADVLEEVRRLAENGYQEVVLTGIHLSSY---GIDLEETESLLSLIRAVHEV 232 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +G+ R+R + PR +++ ++ L+ + P+ HL +QSG D LK MNRR+++ EY + Sbjct: 233 RGIRRIRLGSLEPRIITEEFVQELASLEKICPHFHLSLQSGCDTTLKRMNRRYSSEEYFE 292 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +R + A+++D IVGFPGET+++F + VDK+ + + FKYS R GT + Sbjct: 293 KCLLLRKYFDNPALTTDVIVGFPGETEEEFEQSRAFVDKVDFYETHIFKYSKRQGTKAAV 352 Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRS 432 M QV E VKA+R LL L +K R ++ + +G+ +EVL E+ + G K G + Sbjct: 353 MENQVPEQVKAQRSDNLLALNEKKRR---AYEKSFIGKEVEVLFEEETEVNGSKKQTGYT 409 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITD 457 + L++ + I+KV I + Sbjct: 410 KEYMKIALDTDENLQNCIVKVEIEN 434 >gi|299144058|ref|ZP_07037138.1| 2-methylthioadenine synthetase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518543|gb|EFI42282.1| 2-methylthioadenine synthetase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 438 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 145/449 (32%), Positives = 244/449 (54%), Gaps = 29/449 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N D+ +M+ + S+ Y N+++DA++I++NTC + A E+ + + Sbjct: 8 TLGCSKNEVDTSQMQSILDSKKYIITNNVNDANVIIINTCGFIDAAKEESVDTI-----I 62 Query: 91 KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + ++ K+ G +++AGC+AQ +E++ P V+ ++G + +L+ A G+R+ Sbjct: 63 EAAKYKDVGKCKKLILAGCLAQRYSKELMEEIPEVDAILGTGNIININNILDSAFNGERI 122 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 V D ++ DK+ ++G K VT ++ I EGC+ CT+C++P RG SR + Sbjct: 123 VKVD-NINDKY-----IEGIKKSKVSVTEYVKISEGCNNNCTYCIIPKLRGRNRSRKIED 176 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRYTTS 268 + DE + L++NG E+ L+ QN + G+D K DL+ LSEIK L +R Sbjct: 177 IYDEVKYLVNNGTREVILIAQNTTDY---GIDNYKEYKLKDLVKKLSEIKDLKWIRLMYL 233 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P + +D LI + D L+ Y+ +P+Q SD IL MNR+ +++ ++R+ P+ Sbjct: 234 YPDNFTDELIDEFKNNDKLLNYVDIPLQHISDNILSKMNRKTNRNNISELLFKLRNNIPN 293 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I I + FIVGFPGE + DF + +++ + + +F YS TP NM Q+ ENVK Sbjct: 294 IIIRTTFIVGFPGEENSDFNELNEFIEENKFDKLGAFIYSREEDTPAFNMNNQIQENVKQ 353 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV-L 440 +R L+ Q + E ++S N +G I+EVLIE+ + VGRS P + VV + Sbjct: 354 KRLDILMSTQISISENKLSSN---IGNILEVLIEEIA-DNETYVGRSYMDAPEIDGVVYV 409 Query: 441 NSKNH-NIGDIIKVRITDVKISTLYGELV 468 SKN+ IG V+ITD L G+ + Sbjct: 410 KSKNNLKIGSFYNVKITDYLEYDLIGDAI 438 >gi|254479764|ref|ZP_05093042.1| MiaB-like tRNA modifying enzyme [Carboxydibrachium pacificum DSM 12653] gi|214034296|gb|EEB75092.1| MiaB-like tRNA modifying enzyme [Carboxydibrachium pacificum DSM 12653] Length = 429 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 132/440 (30%), Positives = 245/440 (55%), Gaps = 21/440 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M ++F GYE V+ + AD+ V+NTC + ++ K + + RN KN Sbjct: 2 GCKVNQYETEVMAELFRKAGYEIVDFDEIADVYVINTCSVTARSDMKSRQMIRKTRN-KN 60 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGKRV 149 D +VV GC Q +E+ P V++V+G + ++ +L+ E+ + ++ Sbjct: 61 P------DAIVVAVGCYVQVSPDEVFS-MPEVDIVIGTKDKDKIVDLVKDFEKEKKKTKL 113 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 ++ D +E I GY + A++ I++GC+++CT+C++PY RG SR Sbjct: 114 IENIMKQRD-YEEFGIT--GYTER--TRAYIKIEDGCNQYCTYCIIPYARGPVRSRKPEN 168 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 ++ E +K ++G EI L G ++ ++ G D + D++ + E++G+ R+R ++ Sbjct: 169 IIKEVKKYAEHGYKEIVLTGIHIASY---GRDLKNIGLLDVIKMVHEVEGIERIRISSIE 225 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P +++ ++K +L + + H+ +QSG D LK M R++TA EY+++++R+R PD+ Sbjct: 226 PTFLTEDVVKELANLPKMCRHYHVSLQSGCDETLKRMGRKYTASEYKEVVERLRRYIPDV 285 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 AI++D +VGFPGET+++F + ++I +A+ FKYS R GT N QV VK E Sbjct: 286 AITTDIMVGFPGETEEEFEKSYKFAEEICFAKMHVFKYSRRKGTRAYNFPNQVPNKVKEE 345 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNIG 448 R L + + + F + + + +EVL E+ K+ G + G + SV + + N+ Sbjct: 346 RSKKLLQLSKVCERKFKERFLNRTVEVLFEQKVKDLDGYVEGLTDNYLSVAVKGELENLR 405 Query: 449 D-IIKVRITDVKISTLYGEL 467 + I+ VR+ ++K L GE+ Sbjct: 406 NRILPVRVKEIKNDLLIGEI 425 >gi|315924411|ref|ZP_07920633.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter alactolyticus ATCC 23263] gi|315622290|gb|EFV02249.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter alactolyticus ATCC 23263] Length = 432 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 139/422 (32%), Positives = 224/422 (53%), Gaps = 21/422 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N +D+ M+ F GYE V AD+ V+NTC + K L + R Sbjct: 11 GCKVNDFDTESMKACFLKVGYEVVPFDTAADVYVVNTCTVTHLGDRKSRQMLRKAR---- 66 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF----GKR 148 ++ + ++V AGC AQ EEI + V++++G T +R + E ARF ++ Sbjct: 67 ---RKNPNAVIVAAGCYAQVAPEEISKIEE-VDLILG--TAHRNRVVDEVARFQEDHHRQ 120 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V +D S + FE + I + +R AFL +Q+GC++FCT+C+VPY RG SR + Sbjct: 121 VYVSDISEQHIFEDMPIAE----HRRHTRAFLKVQDGCNQFCTYCIVPYARGRIRSRRID 176 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V +E + L +G E L G ++ ++ GK + G + L+ ++ I G+ R+R + Sbjct: 177 SVCEEVQLLASDGFKEFVLSGIHIASY-GKDMPGGPDLLT-LIRAVDAIPGVARIRLGSI 234 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P M++ + ++ P+ HL +QSG D +L+ MNR +T +Y +I+ RIR Sbjct: 235 EPLLMTETFVAGLSEIKSFCPHFHLSLQSGCDAVLRRMNRHYTTEQYFEIVQRIRRYFSK 294 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 AI++D IVGFPGETD++F+AT D + + + + FKYS R GTP ++ QVDE K Sbjct: 295 PAITTDVIVGFPGETDEEFQATKDFMTAVNFYKVHVFKYSKRHGTPAADFEGQVDETTKH 354 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 R L REQ+ +F G+ + VL E+ + ++ G +P V + + IG Sbjct: 355 RRSQDLIALSREQEQAFLKENAGERMPVLFEQ-LQANHRIEGHTPNYIPVRMFADGKKIG 413 Query: 449 DI 450 I Sbjct: 414 QI 415 >gi|299144166|ref|ZP_07037246.1| 2-methylthioadenine synthetase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518651|gb|EFI42390.1| 2-methylthioadenine synthetase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 435 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 131/402 (32%), Positives = 225/402 (55%), Gaps = 20/402 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVY 81 + + F + + GC++N Y+S M ++F ++GY V+ + +D+ ++NTC + + K Sbjct: 1 MKKSFSILTLGCKVNQYESEAMAELFENEGYLNVDFETEVSDIYIINTCTVTNLSDRKSR 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 F+ R + ++ + +V V GC +Q EE+ P V++++G R+ EL E Sbjct: 61 QFIRRAK-------RDNPNSIVAVVGCYSQTSPEEV-SSIPGVDIIIGTTERNRIVELCE 112 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 K+ ++ S++ E +I N A++ +Q+GC+++CT+C++P+ RG Sbjct: 113 EFSNNKKQINIVRSLKSDHEFQTINTSKENDM--TRAYIKVQDGCNRYCTYCIIPFARGN 170 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 SRS+ ++EARKL G EI L G ++ ++ G D K DL+ +++ I G+ Sbjct: 171 IRSRSIEDSMNEARKLAKAGYKEIILTGIHIGSY---GYDIGKERLIDLIENIASIDGIE 227 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R ++ PR ++D +K + L + HL +QSGS++ILK MNR++T EY Sbjct: 228 RIRLSSIEPRTITDDFMKRVVATNKLCDHFHLSLQSGSNKILKEMNRKYTREEYFDKTQI 287 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IRS P +++D IVGFPGETDDDF + DL+ K+ +++ FKYS R GT + M Q Sbjct: 288 IRSYMPYAGLTTDVIVGFPGETDDDFLDSYDLIKKVEFSKVHVFKYSKRDGTVAAKMKNQ 347 Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 +D N+K +R LL L +L ++ F++ + I VL E+ Sbjct: 348 IDGNIKNKRSSILLALSDELMKK---FSEKNLNVIKSVLFEE 386 >gi|28211649|ref|NP_782593.1| Fe-S oxidoreductase [Clostridium tetani E88] gi|28204091|gb|AAO36530.1| Fe-S oxidoreductase [Clostridium tetani E88] Length = 433 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 141/443 (31%), Positives = 237/443 (53%), Gaps = 23/443 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M + F GY+ V+ AD+ V+NTC + +K + R R + Sbjct: 7 TLGCRVNQYETEAMTEKFIKSGYDIVDFDKLADVYVINTCTVTNMGDKKSRQMISRARRI 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-- 148 N + + V GC +Q E++ + P V+VV+G + + + +E K Sbjct: 67 NN-------NATIAVVGCYSQVAPEKV-SQIPGVDVVIGTRNKGDIVKKVEEYINKKEQV 118 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ D + FE L+I + K AFL IQ+GC+ FC++C++P+ RG S+ Sbjct: 119 ILVEDVLKNNVFEELNI----ESYKDKTRAFLKIQDGCNSFCSYCLIPFARGGICSKEPK 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V++E +KL+++G E+TL G ++ + D LL + +I+G+ R+R + Sbjct: 175 KVIEEIKKLVEHGFKEVTLSGIQISLYGNDFQDN--WDLITLLEEIDKIEGIERVRIGSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P+ D +I +L L P+ HL +QSG D LK MNR +T EYR I+ ++R Sbjct: 233 SPKYFKDDIIDRFSNLKKLCPHFHLSLQSGCDETLKRMNRSYTTEEYRYIVQKLREKIKG 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I++D IVGFPGE++++F+ T +++I ++ FKYSPR GT + + EQ+D N+K Sbjct: 293 VSITTDIIVGFPGESEEEFKKTHRFLEEIKLSKMHIFKYSPRSGTKAAEIQEQIDGNIKD 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKN 444 ER L+ L KKL + F + + Q ++VL EK E+ G +P VV S Sbjct: 353 ERSNSLIELNKKLEK---DFMEKFLEQELQVLYEEKSNLEENSYEGYTPNYIKVVTKSSM 409 Query: 445 HNIGDIIKVRITDVKISTLYGEL 467 + G I+ I +VK + G+L Sbjct: 410 NLQGKIVNTIIKEVKEDYVLGKL 432 >gi|167039974|ref|YP_001662959.1| MiaB-like tRNA modifying protein [Thermoanaerobacter sp. X514] gi|300914064|ref|ZP_07131380.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X561] gi|307724703|ref|YP_003904454.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X513] gi|166854214|gb|ABY92623.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X514] gi|300888999|gb|EFK84145.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X561] gi|307581764|gb|ADN55163.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X513] Length = 449 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 138/450 (30%), Positives = 241/450 (53%), Gaps = 37/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M ++F GYE V+ + AD+ V+NTC + ++ K + + R Sbjct: 21 TLGCKVNQYETEVMAELFKKAGYEVVDFDEKADVYVINTCTVTNRSDMKSRQEIRKAR-- 78 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K+ D LVV GC Q EE P V++ +G + ++ EL+E Sbjct: 79 -----KKNPDALVVAVGCYVQVSPEEAFS-LPEVDIAIGTKNKDKIVELVE--------- 123 Query: 151 DTDYSVEDKFERLSIVDGGYNRKR----GVTAF-------LTIQEGCDKFCTFCVVPYTR 199 K ++LS+V+ +K GVTA+ + IQ+GC+++CT+C++PY R Sbjct: 124 ----EFTQKNQKLSVVNNIMTQKEYEEFGVTAYTERTRAYIKIQDGCNQYCTYCIIPYAR 179 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G SR +V+DE ++ D+G EI L G ++ ++ G D + D++ + EI G Sbjct: 180 GPVRSRDPKKVLDEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKMIHEIDG 236 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R ++ P +++ +K +L + + H+ +QSG D LK M RR+T EY+ +I Sbjct: 237 IKRIRLSSIEPTFLTEEFVKEIANLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVI 296 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 DR+R D+AI++D +VGFPGET+++F T V++I +++ FKYS R GT N Sbjct: 297 DRLREYIKDVAITTDVMVGFPGETEEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNFP 356 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSV 438 QV ++K +R L + + F ++ +G+ +EVL E+ K +G + G + S+ Sbjct: 357 NQVANHIKEDRSKKLIELSNRCEYKFMESFIGKTLEVLFEQPVKNMEGYVEGLTDNYLSI 416 Query: 439 VLNSKNHNI-GDIIKVRITDVKISTLYGEL 467 + + +I V+I ++K + L GE+ Sbjct: 417 AVKGDIKLLRNEIFPVKIKEIKDNFLIGEI 446 >gi|304437669|ref|ZP_07397621.1| MiaB family tRNA modification enzyme [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369302|gb|EFM22975.1| MiaB family tRNA modification enzyme [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 429 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 211/392 (53%), Gaps = 18/392 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N +++ ME +F ++GYE V + AD+ V+NTC + + K + R + Sbjct: 7 TLGCKVNQFETETMEGLFRARGYEIVPFEERADVYVINTCSVTHLSDRKSRQIIRRAARM 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + + VAGC AQ EE+ R V VV+G + R+ + +E A VV Sbjct: 67 NPT-------ACIAVAGCYAQVSPEEV-RGLEGVRVVIGTEERARIVDYVEEALRADGVV 118 Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + TD FE + + G +R R AFL I++GC FC+FC++PY RG SR L+ Sbjct: 119 EEITDVMQARAFEDIPL-HGVPHRTR---AFLKIEDGCQNFCSFCIIPYARGPVKSRPLA 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 V E KL G E+ L G ++ A+ G+D ++ T +D + K + RLR + Sbjct: 175 AVAREMEKLAAAGFREVVLTGIHLGAY---GIDLPQRPTLADACRTALRTKEVRRLRLGS 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++S+ L+ P+LHLP+Q+GSD +L++MNRR+ + Q++ +R P Sbjct: 232 LESVELSEDLLSLVRTEPRFAPHLHLPLQAGSDNVLRAMNRRYDTAAFAQLLADVRRAVP 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 AIS+D IVGFPGET++DF A +D V +G+A+ F YS R GTP + +Q+ V+ Sbjct: 292 GAAISTDIIVGFPGETEEDFTAGLDFVRAMGFARMHVFPYSARRGTPAARRTDQIAPPVR 351 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ER +Q E +++ A +G + EVL E Sbjct: 352 RERAARMQALAEEMAEAYHRAALGTVDEVLFE 383 >gi|325295204|ref|YP_004281718.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065652|gb|ADY73659.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium thermolithotrophum DSM 11699] Length = 437 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 136/437 (31%), Positives = 243/437 (55%), Gaps = 20/437 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + GC+MN +++ ME+ F +GY+ V+ ++AD+ ++NTC + A K L Sbjct: 2 KRVAFYTLGCKMNFHETAYMEEQFKKRGYKIVDFSEEADIYIVNTCTVTSVADSKSRKAL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ +N + LVV GC ++ E++ + V+ + G +++ +++E+ Sbjct: 62 RKAKS-RNPKA------LVVATGCYSEVYPEKVEKLEE-VDFITGNVEKFQIVDIVEKRI 113 Query: 145 FGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 GK R+ E++F L+I Y K AFL IQ+GC+ FC++C++P RG Sbjct: 114 EGKLPRLYLRGIWKENQFYPLTIRH--YEGK--TRAFLKIQQGCELFCSYCIIPKARGKM 169 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 +S +V+++ ++LI++G EI L G ++ + GLD E + + L+ + +I GL Sbjct: 170 LSEKPEKVLEQVKELINSGYKEIVLTGTHLGGY---GLDLEESLSLAKLIEKIVKIPGLY 226 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ P + SD LI+ + P+LH+P+QSGSDRIL M RR+T +Y+ I++R Sbjct: 227 RLRISSVEPIEFSDELIEVVTSSPKIAPHLHIPLQSGSDRILNLMKRRYTKRDYKTIVER 286 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I S PDI I +D +VGFPGET++DF T + + + F YSPR GT M + Sbjct: 287 ILSKNPDICIGTDVMVGFPGETEEDFEETKKFIKEFPFGYIHVFPYSPRKGTVAYKMKDS 346 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V K ER L++ +E+ +++ + + +E L+ + ++ +V +++ +V + Sbjct: 347 VSSLEKKERAAILREIGKEKSLNYRKKFLDKELESLVLSNLEDGDSVVLSGNYIRMIVKD 406 Query: 442 SKNHNIGDIIKVRITDV 458 G+I+KVR+ +V Sbjct: 407 --KLKPGEIVKVRLKEV 421 >gi|296333299|ref|ZP_06875752.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675196|ref|YP_003866868.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149497|gb|EFG90393.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413440|gb|ADM38559.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis subsp. spizizenii str. W23] Length = 451 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 141/444 (31%), Positives = 241/444 (54%), Gaps = 21/444 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER + AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V++VVG Q ++ +++ R ++ + Sbjct: 65 ----IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIDQYREERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVSNIMKARVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + F+ LL L + ++G+ R+R ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLSELDTRVEGVKRIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ D ++ +LH+P+QSGS+ +LK M R++T + +++++ P Sbjct: 233 IEASQITDEVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +A++SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QVDENVK Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 E RL+ L +L ++ S + V +II K +E+ VG + VV Sbjct: 353 NERVHRLIALSDQLAKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTE 412 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 IG I+KV+I + G+ V Sbjct: 413 DMIGKIVKVKILNAGYPYNEGQFV 436 >gi|225389119|ref|ZP_03758843.1| hypothetical protein CLOSTASPAR_02865 [Clostridium asparagiforme DSM 15981] gi|225044818|gb|EEG55064.1| hypothetical protein CLOSTASPAR_02865 [Clostridium asparagiforme DSM 15981] Length = 378 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/334 (38%), Positives = 196/334 (58%), Gaps = 28/334 (8%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P + ++GCQMN DS ++ + S GY+ +S + AD ++ NTC +RE A ++VY Sbjct: 47 PLTCCINTFGCQMNARDSEKLLGILESIGYKATDS-EHADFVLYNTCTVRENANQRVYGR 105 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141 LG++ K K+ +++ + GC+ Q E I V+++ G ++L EL+ Sbjct: 106 LGQLGAYK----KKNPHMMIALCGCMMQEPEVVERIKTSYHFVDLIFGTHNIFKLAELVS 161 Query: 142 R---ARFGK--RVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 R GK R V DTD VED V+ Y K GV GC+ FC+ Sbjct: 162 TCLDTRQGKKHRTVIDIWKDTDKIVED-----LPVERKYPFKSGVNIIF----GCNNFCS 212 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 +C+VPY RG E SR +++ E ++L +GV EI LLGQNVN++ GK L+ E TF+ LL Sbjct: 213 YCIVPYVRGRERSRRPEEILKEVKRLAADGVVEIMLLGQNVNSY-GKNLE-EPMTFAQLL 270 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 + +I G+ R+R+ TSHP+D+SD LI+ + +LHLP+QSGS RILK MNRR+T Sbjct: 271 REVEKIDGIERIRFMTSHPKDLSDELIEVMSQSKKICRHLHLPLQSGSSRILKEMNRRYT 330 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345 +Y + ++I++ P I++++D IVGFPGET++ Sbjct: 331 KEQYLTLAEKIKAAVPGISLTTDIIVGFPGETEE 364 >gi|295091931|emb|CBK78038.1| SSU ribosomal protein S12P methylthiotransferase [Clostridium cf. saccharolyticum K10] Length = 446 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 144/452 (31%), Positives = 241/452 (53%), Gaps = 23/452 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + S GC N+ D+ M + GY + ++AD+I++NTC A E+ + + Sbjct: 2 KILCVSLGCDKNLVDTEMMLGLLNRDGYTFTDDENEADVILINTCCFINDAKEESVNTIL 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + LK K+G ++V GC+AQ EEI++ P V+ ++G TY + +L++A Sbjct: 62 EMAELK----KKGRCRALIVTGCMAQRYKEEIMQEIPEVDGILGTSTYDEISNVLKKALS 117 Query: 146 GKRVVDTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G+ + + + + K +RL G Y AFL I EGCDK+CT+C++P RG Sbjct: 118 GEEHISCFHELTALPDVKAKRLVTTGGHY-------AFLKIAEGCDKYCTYCIIPSLRGP 170 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S + +++++AR+L + GV E+ L+ Q + G L G+K +LL L+ I GL Sbjct: 171 YRSVPMERLIEQARELTEQGVRELILVAQETTLY-GVDLYGKK-MLPELLRQLAAIDGLY 228 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R +P ++++ LI+ + + YL +P+Q SDRILK MNR+ T E ++ I R Sbjct: 229 WIRIQYCYPEEITEELIETIRTEEKICHYLDIPIQHASDRILKKMNRKTTMEELKRNIAR 288 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R PDIA+ + I GFPGET +D MD VD++ + + F YS TP ++ +Q Sbjct: 289 LREAIPDIALRTTLIAGFPGETKEDHELLMDFVDEMEFERLGVFAYSAEEDTPAASFPDQ 348 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437 V + +K ER L + +E ++ VG+I++V+IE ++ VGR+ P + Sbjct: 349 VPQEIKEERRDALMELQQEIAFEKSERMVGRILDVMIEGKVADENAYVGRTYMDAPNVDG 408 Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467 ++ + + + GD KVR+T L GE+ Sbjct: 409 LIFVNTDEPLMSGDFCKVRVTGALDYDLIGEM 440 >gi|321312027|ref|YP_004204314.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis BSn5] gi|320018301|gb|ADV93287.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis BSn5] Length = 451 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 139/431 (32%), Positives = 237/431 (54%), Gaps = 21/431 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER + AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V++VVG Q ++ +++ R ++ + Sbjct: 65 ----IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIDQYREERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVSNIMKARVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + F+ LL L + ++G+ R+R ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLSELDTRVEGVKRIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ D ++ +LH+P+QSGS+ +LK M R++T + +++++ P Sbjct: 233 IEASQITDKVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +A++SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QVDENVK Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 E RL+ L +L ++ S + V +II K +E+ VG + VV Sbjct: 353 NERVHRLIALSDQLAKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTE 412 Query: 445 HNIGDIIKVRI 455 IG I+KV+I Sbjct: 413 DMIGKIVKVKI 423 >gi|295696216|ref|YP_003589454.1| MiaB-like tRNA modifying enzyme YliG [Bacillus tusciae DSM 2912] gi|295411818|gb|ADG06310.1| MiaB-like tRNA modifying enzyme YliG [Bacillus tusciae DSM 2912] Length = 442 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 148/450 (32%), Positives = 240/450 (53%), Gaps = 24/450 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRI 87 V + GC+ N DS M + G++ V +AD+IV+NTC ++A AE V + L Sbjct: 7 VVTLGCEKNQVDSEVMMGLMERWGFDLVADPQEADVIVVNTCGFVDQAKAESVNTILQMA 66 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 + +N K +VVAGC+AQ EE++R P ++ ++G ++R+PE++E+A G+ Sbjct: 67 QYKENGHCK-----ALVVAGCLAQRYQEELMREIPEIDGMLGTGEFHRVPEVVEQALAGR 121 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + V + D RKR ++++ I EGCD CTFC +P RG S Sbjct: 122 HPMRFGNPV-------YLYDEVTPRKRVGLPYSSYVKIAEGCDHGCTFCAIPLMRGKFRS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + +V+EAR+L +GV EI+L+ Q+ + G L G + DLL +L+++ L +R Sbjct: 175 RPIPSIVEEARRLAADGVREISLIAQDSTQY-GLDLYGRR-RLPDLLKALNDVDELRWIR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++P +D LI A L + Y+ LP+Q D IL++M+R + R++++RIR+ Sbjct: 233 LHYAYPGYFTDELIDAMAGLPKVCKYVDLPLQHSEDEILRAMHRPGRNSQVRKLLERIRT 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P++AI S FIVGFPGET++ F D V+++ + + F +S GTP + M Q+ E Sbjct: 293 RIPNVAIRSSFIVGFPGETEEQFLRLADFVEEMAFDRIGVFAFSREEGTPSAAMEGQISE 352 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQS-----V 438 K R L + R+ + A VGQ+I+ L+E+ + + +GRS + V Sbjct: 353 AEKERRAAWLMEVGRKASAARGAARVGQVIDCLLERQDDRRPDIWIGRSEYDAPEIDGQV 412 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ G+ +KVRIT L GE V Sbjct: 413 FVSGAGGRPGEFVKVRITHSFDFDLAGEGV 442 >gi|283797856|ref|ZP_06347009.1| RNA modification enzyme, MiaB family [Clostridium sp. M62/1] gi|291074547|gb|EFE11911.1| RNA modification enzyme, MiaB family [Clostridium sp. M62/1] Length = 446 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 144/452 (31%), Positives = 241/452 (53%), Gaps = 23/452 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + S GC N+ D+ M + GY + ++AD+I++NTC A E+ + + Sbjct: 2 KILCVSLGCDKNLVDTEMMLGLLNRDGYTFTDDENEADVILINTCCFINDAKEESVNTIL 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + LK K+G ++V GC+AQ EEI++ P V+ ++G TY + +L++A Sbjct: 62 EMAELK----KKGRCRALIVTGCMAQRYKEEIMQEIPEVDGILGTSTYDEISNVLKKALS 117 Query: 146 GKRVVDTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G+ + + + + K +RL G Y AFL I EGCDK+CT+C++P RG Sbjct: 118 GEEHISCFHELTALPDVKAKRLVTTGGHY-------AFLKIAEGCDKYCTYCIIPSLRGP 170 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S + +++++AR+L + GV E+ L+ Q + G L G+K +LL L+ I GL Sbjct: 171 YRSVPMERLIEQARELTEQGVRELILVAQETTLY-GVDLYGKK-MLPELLRQLAAIDGLY 228 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R +P ++++ LI+ + + YL +P+Q SDRILK MNR+ T E ++ I R Sbjct: 229 WIRIQYCYPEEITEELIETIRTEEKICHYLDIPIQHASDRILKRMNRKTTMEELKRNIAR 288 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R PDIA+ + I GFPGET +D MD VD++ + + F YS TP ++ +Q Sbjct: 289 LREAIPDIALRTTLIAGFPGETKEDHELLMDFVDEMEFERLGVFAYSAEEDTPAASFPDQ 348 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437 V + +K ER L + +E ++ VG+I++V+IE ++ VGR+ P + Sbjct: 349 VPQEIKEERRDALMELQQEIAFEKSERMVGRILDVMIEGKVADENAYVGRTYMDAPNVDG 408 Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467 ++ + + + GD KVR+T L GE+ Sbjct: 409 LIFVNTDEPLMSGDFCKVRVTGALDYDLIGEM 440 >gi|20807443|ref|NP_622614.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis MB4] gi|20515967|gb|AAM24218.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis MB4] Length = 437 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 132/442 (29%), Positives = 245/442 (55%), Gaps = 21/442 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M ++F GYE V+ + AD+ V+NTC + ++ K + + RN Sbjct: 8 TLGCKVNQYETEVMAELFRKAGYEIVDFDEIADVYVINTCSVTARSDMKSRQMIRKTRN- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 KN D +VV GC Q +E+ P V++V+G + ++ +L+ E + Sbjct: 67 KNP------DAIVVAVGCYVQVSPDEVFS-MPEVDIVIGTKDKDKIVDLVKDFENEKKKT 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 ++++ D +E I GY + A++ I++GC+++CT+C++PY RG SR Sbjct: 120 KLIENIMKQRD-YEEFGIT--GYTER--TRAYIKIEDGCNQYCTYCIIPYARGPVRSRKP 174 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++ E +K ++G EI L G ++ ++ G D + D++ + E++G+ R+R ++ Sbjct: 175 ENIIKEVKKYAEHGYKEIVLTGIHIASY---GRDLKNIGLLDVIKMVHEVEGIERIRISS 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P +++ ++K +L + + H+ +QSG D LK M R++TA EY+++++R+R P Sbjct: 232 IEPTFLTEDVVKELANLPKMCRHYHVSLQSGCDETLKRMGRKYTASEYKEVVERLRRYIP 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D+AI++D +VGFPGET+++F + ++I +A+ FKYS R GT N QV VK Sbjct: 292 DVAITTDIMVGFPGETEEEFEKSYKFAEEICFAKMHVFKYSRRKGTRAYNFPNQVPNKVK 351 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHN 446 ER L + + + F + + + +EVL E+ K+ G + G + SV + + N Sbjct: 352 EERSKKLLQLSKVCERKFKERFLNRTVEVLFEQKVKDLDGYVEGLTDNYLSVAVKGELEN 411 Query: 447 IGD-IIKVRITDVKISTLYGEL 467 + + I+ VR+ ++K L GE+ Sbjct: 412 LRNRILPVRVKEIKNDLLIGEI 433 >gi|167758331|ref|ZP_02430458.1| hypothetical protein CLOSCI_00670 [Clostridium scindens ATCC 35704] gi|167664228|gb|EDS08358.1| hypothetical protein CLOSCI_00670 [Clostridium scindens ATCC 35704] Length = 449 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 242/454 (53%), Gaps = 36/454 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N+ DS M + ++GY V+ AD+I++NTC I + E + + L + Sbjct: 15 SLGCDKNLVDSEVMLGLLAAKGYRMVDDEMQADIIIVNTCCFIHDAKEESIQTILEMAQY 74 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + R+K ++VV GC+AQ +EIL P V+ V+G +Y ++ E +E A GK Sbjct: 75 KTDGRLK-----VLVVTGCLAQRYQQEILDEIPEVDAVLGTTSYDKIVEAVEEALAGKGH 129 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V+ VED + L +VD +R VT A+L I EGCDK CT+C++P RG S Sbjct: 130 VE----VED-IDALPLVD----TRRLVTTGGHFAYLKIAEGCDKHCTYCIIPKIRGDFRS 180 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + ++V EA +L + GV E+ L+ Q + GK L GEK + LL L I G+ +R Sbjct: 181 VPMERLVKEAGELAEQGVKELILVAQETTLY-GKDLYGEK-SLHRLLRELCRISGIRWIR 238 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P ++ + LI+ + + YL LP+Q +D ILK M RR + + +II R+R Sbjct: 239 LLYCYPEEIDENLIQIMKEEKKICHYLDLPIQHANDDILKRMGRRTSKNQLEEIIGRLRR 298 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PDIA+ + I GFPGET + M+ VD++ + + F YSP TP + M +QV E Sbjct: 299 EIPDIALRTTLITGFPGETKEQHEELMEFVDEMEFDRLGVFTYSPEEDTPAAGMPDQVPE 358 Query: 385 NVKAERLLCLQKKLRE--QQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436 VK ER Q ++ E Q++ F+ +A +G+ + V+IE ++ VGR+ P + Sbjct: 359 EVKEER----QAEIMELQQEIVFDQAEAMIGREVLVMIEGKVADENAYVGRTYKDAPNVD 414 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 ++ + + GD +V++T L GEL+ Sbjct: 415 GLIFINTEAELMSGDFARVKVTGALEYDLIGELM 448 >gi|16079597|ref|NP_390421.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis subsp. subtilis str. 168] gi|221310468|ref|ZP_03592315.1| hypothetical protein Bsubs1_13906 [Bacillus subtilis subsp. subtilis str. 168] gi|221314791|ref|ZP_03596596.1| hypothetical protein BsubsN3_13822 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319714|ref|ZP_03601008.1| hypothetical protein BsubsJ_13743 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323991|ref|ZP_03605285.1| hypothetical protein BsubsS_13877 [Bacillus subtilis subsp. subtilis str. SMY] gi|1730990|sp|P54462|YQEV_BACSU RecName: Full=Putative methylthiotransferase yqeV gi|1303812|dbj|BAA12468.1| YqeV [Bacillus subtilis] gi|1890061|dbj|BAA12080.1| YqeV [Bacillus subtilis] gi|2634989|emb|CAB14485.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis subsp. subtilis str. 168] gi|291484990|dbj|BAI86065.1| hypothetical protein BSNT_03787 [Bacillus subtilis subsp. natto BEST195] Length = 451 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 139/431 (32%), Positives = 237/431 (54%), Gaps = 21/431 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F GYER + AD+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V++VVG Q ++ +++ R ++ + Sbjct: 65 ----IRQNPDGVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIDQYREERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVSNIMKARVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLLRSRDPE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + F+ LL L + ++G+ R+R ++ Sbjct: 176 EVIKQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNFAKLLSELDTRVEGVKRIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +I+ D ++ +LH+P+QSGS+ +LK M R++T + +++++ P Sbjct: 233 IEASQITDEVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +A++SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QVDENVK Sbjct: 293 GLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 E RL+ L +L ++ S + V +II K +E+ VG + VV Sbjct: 353 NERVHRLIALSDQLAKEYASQYENEVLEIIPEEAFKETEEENMFVGYTDNYMKVVFKGTE 412 Query: 445 HNIGDIIKVRI 455 IG I+KV+I Sbjct: 413 DMIGKIVKVKI 423 >gi|150015722|ref|YP_001307976.1| MiaB-like tRNA modifying enzyme [Clostridium beijerinckii NCIMB 8052] gi|149902187|gb|ABR33020.1| MiaB-like tRNA modifying enzyme [Clostridium beijerinckii NCIMB 8052] Length = 432 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 140/442 (31%), Positives = 238/442 (53%), Gaps = 18/442 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M + F +GYE + AD+ V+NTC + + +K + R R Sbjct: 5 TLGCRVNHYETEAMAEKFIREGYEVTDFEGFADVYVINTCSVTNMSDKKSRQIISRAR-- 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-- 148 + + ++ GC +Q EE+ + V+VV+G + + + +A+ ++ Sbjct: 63 -----RRNENAIIAAVGCYSQVAPEEVSKIQG-VDVVLGTRNKGDIVYYVNKAKDEQKPQ 116 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ + +FE L+I + Y K AFL IQ+GC++FC +C++PYTRG S+ Sbjct: 117 LMVGEVLKNKQFEELNIEE--YQDK--TRAFLKIQDGCNRFCAYCLIPYTRGTTCSKDPQ 172 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V+DE + L ++G EI L G + ++ G LDG T LL + ++ G+ R+R + Sbjct: 173 KVLDEIKNLSEHGFKEIILSGIHTASY-GVDLDG-NVTLITLLEEIEKLDGIERVRIGSI 230 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P +D +I+ + L P HL +QSG D LK MNRR+TA EY ++RIR D Sbjct: 231 EPSFFTDEVIEKMKKMKKLCPQFHLSLQSGCDATLKRMNRRYTAKEYEDAVNRIRENLKD 290 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +I++D IVGFPGETD++F T + + +I + FK+SPR GT S+M Q+D NVK Sbjct: 291 ASITTDVIVGFPGETDEEFNETYEYLKRIKLTKTHIFKFSPRKGTKASDMPNQIDGNVKD 350 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS-PWLQSVVLNSKNHN 446 +R L + + + F+ + VG+ ++VL+E+ K G G + +++ + N Sbjct: 351 KRSKALIELNAKNEGDFSKSLVGRELDVLVEQEVSNKPGVFEGYTRNYVKVEIPNGSRDM 410 Query: 447 IGDIIKVRITDVKISTLYGELV 468 IG II +I + G+++ Sbjct: 411 IGKIILCKIMASDAEYVVGKII 432 >gi|325847803|ref|ZP_08170025.1| tRNA methylthiotransferase YqeV [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480821|gb|EGC83874.1| tRNA methylthiotransferase YqeV [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 432 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 235/443 (53%), Gaps = 28/443 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + + F +K+ GC++N Y+S +E++F +G+E+ D+AD+ V+NTC + + K Sbjct: 1 MSKTFNIKTLGCKVNQYESEAIEELFKKRGFEK--KEDNADIYVINTCTVTNMSDRKSRQ 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + + R KE D ++ V GC +Q +G+E+ + V++V+G + + +L E Sbjct: 59 TISKAR-------KENKDAIIAVIGCYSQVKGDEV-KEIEGVDIVLGSRNKEEVVDLCEN 110 Query: 143 ARFGKRVVDT----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 F V T ++ + + E L I N+ A++ IQ+GC+ +C++C++PY Sbjct: 111 --FINDHVKTKDVEEFKIGEAIEDLEIS----NQADMTRAYIKIQDGCNMYCSYCLIPYA 164 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG SR L ++DEA++L DNG EI L G +V ++ GK LD + D++ +S+I Sbjct: 165 RGNIASRDLVSIIDEAKRLRDNGFKEIVLTGIHVASY-GKDLDL-NISLIDVIEHISKID 222 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R+R ++ PR + ++ D + HL +QSGSD +LK MNR++ +++ Sbjct: 223 GIERIRLSSMEPRHIDREFLQRMKDTKKACDHFHLSLQSGSDDVLKLMNRKYDTKIFKEK 282 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +D IR P+ +++D IVGFP E++ + T D V I +++ FKYS R GT ++M Sbjct: 283 VDLIREYFPNAGLTTDIIVGFPNESEKNHEQTKDFVRDIKFSKTHLFKYSKRDGTKAASM 342 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 +QVD N K R L ++ F D +G+ + VL E + G G S V Sbjct: 343 KDQVDGNTKKRRSKELSVIEKKNSHEFLDNQIGKTLSVLFETKTELDGYKSGYSTNYLRV 402 Query: 439 VLNSKNHNIGDIIKVRITDVKIS 461 H D+ I D+KI+ Sbjct: 403 ------HTKDDVEINEIKDIKIT 419 >gi|257066655|ref|YP_003152911.1| RNA modification enzyme, MiaB family [Anaerococcus prevotii DSM 20548] gi|256798535|gb|ACV29190.1| RNA modification enzyme, MiaB family [Anaerococcus prevotii DSM 20548] Length = 431 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 140/443 (31%), Positives = 241/443 (54%), Gaps = 23/443 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + + GC++N Y+S +E++F ++GYE+ ++AD+ V+NTC + + K + R Sbjct: 5 FNIITLGCKVNQYESEAVEEIFQAKGYEK--KQNNADIYVINTCTVTNMSDRKSRQMISR 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 R ++ + ++ V GC +Q + EE+ V+VV+G + + +L E Sbjct: 63 AR-------RDNPEAVIAVMGCYSQVKPEEVAAIEG-VDVVLGSRNKEEVVDLCENVLQN 114 Query: 147 KRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K+V+D +S E L I N++ A++ IQ+GC+ +C++C++PY RG S Sbjct: 115 KKVIDKVLSFSETKTIEELEI----SNQEAMTRAYMKIQDGCNMYCSYCLIPYARGNIAS 170 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + + EA++L NG EI L G +V ++ GK L + D++ +S+ G+ R+R Sbjct: 171 RDMDSIKKEAKRLAQNGYKEIVLTGIHVASY-GKDLRN-GTSLIDVIEEVSKTDGIERIR 228 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ PR ++ ++ + + HL +QSGSD ILK+MNR++ +++ +D IR Sbjct: 229 LSSMEPRHITRDFLERMKATEKACDHFHLSLQSGSDEILKAMNRKYDTKIFKEKVDLIRE 288 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 V P+ +++D IVGFP ET+ + T D V +I +A+ FKYS R GT ++M +V+ Sbjct: 289 VFPNAGLTTDIIVGFPTETEKNHEETKDFVKEIKFAKTHLFKYSKRDGTKAASMKPEVNG 348 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 N+K ERL L+ +++F +G+ + VL E +G G S V N K+ Sbjct: 349 NIKKERLKELEAIEEVNRLNFLKNQIGKTLSVLFESKSDMEGYKSGYSTNYLRV--NVKD 406 Query: 445 HNIGD--IIKVRITDVKISTLYG 465 +IGD I V IT++K L G Sbjct: 407 -DIGDNEIRDVLITEIKNDELIG 428 >gi|238917088|ref|YP_002930605.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750] gi|238872448|gb|ACR72158.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750] Length = 446 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 132/415 (31%), Positives = 226/415 (54%), Gaps = 24/415 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYS 82 ++ + S GC++N Y++ ME M +GYE V +D AD+ ++NTC + A K Sbjct: 6 KKVAIHSLGCKVNSYEAESMEIMLRDEGYEIVPFSEDVQADIYIINTCSVTNIADRKSRQ 65 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L + + + + +VV AGC QA+ + + ++ V++++G + E L Sbjct: 66 MLHKAKKM-------NPEAVVVAAGCYVQADPDGV-KKDECVDIILGNNMKISIVEALND 117 Query: 143 ARFGKRVVDTDYSVEDKF---ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G + DK+ E L I G + + A++ IQ+GC++FC++C++PY R Sbjct: 118 YFGGADKTSYLVDINDKYQEYESLKINQTGEHTR----AYIKIQDGCNQFCSYCIIPYVR 173 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G SR +V+E + L GV E+ L G +++++ G D E + +L+ ++ EI+G Sbjct: 174 GRVRSRKPEDIVNEVKTLAATGVKEVVLTGIHISSY---GTDLENISLIELIEAIHEIEG 230 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R + PR +++ K L+ + P+ HL +QSG D+ LK+MNR++ EY + Sbjct: 231 IKRIRLGSLEPRIITEEFAKRIAGLEKICPHFHLSLQSGCDKTLKAMNRKYNTEEYYEGC 290 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R V + AI++D IVGFPGET++DF T ++K+ + + FKYS R GT M Sbjct: 291 VKLREVFENPAITTDVIVGFPGETEEDFLETRKFLEKVHFYEMHIFKYSRRKGTVADKMK 350 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 EQV + VK+ER L + Q + + +G+ +EVLIE E ++ GRS + Sbjct: 351 EQVADTVKSERSAVLLALEKAQSLEYRKMYIGKRLEVLIE----ELTEIDGRSYY 401 >gi|307153171|ref|YP_003888555.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7822] gi|306983399|gb|ADN15280.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7822] Length = 436 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 145/453 (32%), Positives = 234/453 (51%), Gaps = 38/453 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC+ N DS M + GY V+ D AD +++NTC SF+G R Sbjct: 9 ISHLGCEKNRIDSEHMLGLLAQAGY-GVDDPDLADYVIVNTC-----------SFIGEAR 56 Query: 89 NLKNSRIKEGGDL--LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + E + ++++GC+AQ +E+L P +VG Y+++ E++ER G Sbjct: 57 QESVRTLVELAEANKKIIISGCLAQHFQDELLCELPEAVALVGTGDYHKIVEVIERVESG 116 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEI 203 +RV + S E + I D R R T A+L + EGCD C+FC++P+ RG + Sbjct: 117 QRV--KEISPEPTY----IADENLPRYRTTTEGVAYLRVAEGCDYRCSFCIIPHLRGNQR 170 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVR 262 SRS+ +V EA +L GV EI L+ Q + G L GE ++LL SL ++ +R Sbjct: 171 SRSIESIVAEAEQLAAQGVQEIILISQITTNY-GLDLYGEP-KLAELLRSLGKVDVPWIR 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 + Y ++P ++ +IKA ++PYL LP+Q IL++MNR II+RI Sbjct: 229 IHY--AYPTGLTPKVIKAIQQTPNVLPYLDLPLQHSHPEILRAMNRPWQGKVNDSIIERI 286 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + P+ + + FIVGFPGETD+ F ++ V + + F +SP TP M Q+ Sbjct: 287 KDTIPEAILRTTFIVGFPGETDEHFAHLVEFVKRHQFDHVGVFTFSPEEETPAYRMANQI 346 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435 + + +R ++ +Q+ + Q+ N AC+G ++VLIE+ G+L+GRS P + Sbjct: 347 PQEIMEQRRDTIMQIQQPISLQK---NCACIGDTVDVLIEQENPHTGQLIGRSARFAPEV 403 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V ++G ++ V+I D I LYGE+V Sbjct: 404 DGLVYVEGEASLGSLVSVKIKDADIYDLYGEVV 436 >gi|187778464|ref|ZP_02994937.1| hypothetical protein CLOSPO_02058 [Clostridium sporogenes ATCC 15579] gi|187772089|gb|EDU35891.1| hypothetical protein CLOSPO_02058 [Clostridium sporogenes ATCC 15579] Length = 432 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 139/442 (31%), Positives = 241/442 (54%), Gaps = 22/442 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++NVY++ M + F QGYE V+ + AD+ V+NTC + +K + R R Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYEVVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149 ++ ++ V GC +Q EE+ + V+VV+G + + + RA K +V Sbjct: 65 -----RQNSKAIIAVVGCYSQIAPEEVAKIEG-VDVVLGTRNKGDIVYWINRAMEEKNQV 118 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ + +K FE L+I + Y K AFL IQ+GC++FC++C++P+ RG S+ Sbjct: 119 IEVKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V++E RKL +G EI L G ++ ++ G L+G K + +L + +++G+ R+R + Sbjct: 175 KVMEEVRKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEDIDKVEGIERIRIGSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ I L P+ HL +QSG + LK MNR++T +Y++I+ +R+ Sbjct: 233 DPTFFTEEEIIRISKLKKFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVYNLRTNIEA 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I++D IVGFPGET+++F T + + I ++ FK+SPR T M QVD N+K Sbjct: 293 VSITTDIIVGFPGETEEEFNKTYEFLKDIKLSKMHVFKFSPRKATRAEKMENQVDGNIKE 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER ++ L K L ++ F + + + + VL E+ KEKG G +P + S Sbjct: 353 ERSNKIINLDKALEKE---FMNKFIEKEMLVLYEQETKEKGIFEGYTPNYIKIYAKSLKD 409 Query: 446 NIGDIIKVRITDVKISTLYGEL 467 G+II ++ +V + GE+ Sbjct: 410 ITGEIISTKLKEVSKDFIKGEI 431 >gi|317500459|ref|ZP_07958683.1| MiaB family RNA modification enzyme [Lachnospiraceae bacterium 8_1_57FAA] gi|316898214|gb|EFV20261.1| MiaB family RNA modification enzyme [Lachnospiraceae bacterium 8_1_57FAA] Length = 440 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 150/452 (33%), Positives = 240/452 (53%), Gaps = 32/452 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N+ D+ M + S+GYE + AD+IV+NTC I + E + + L Sbjct: 7 SLGCDKNLVDTEVMLGLLASRGYEMTDDERQADIIVINTCCFIHDAKEESIQNILEMAEY 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K+ ++K +++V GC+AQ +EIL P V+ V+G Y ++ + ++RA G++ Sbjct: 67 KKSGQVK-----VLIVTGCLAQRYRQEILDEIPEVDEVLGTTAYDKILDAVDRALEGEQG 121 Query: 150 V---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + D + +RL G + A+L I EGCDK CT+C++P RG S Sbjct: 122 IILSDLNALPVSGAKRLVTTGGHF-------AYLKIAEGCDKHCTYCIIPKIRGNFRSVP 174 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + +++ EA++L + GV E+ L+ Q + GK L GEKC L+ L +I G+ +R Sbjct: 175 MERLIKEAKELAEQGVKELILVAQETTLY-GKDLYGEKC-LHRLVEELCKIAGIRWIRIL 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P +++D LI+ + YL LP+Q SD ILK M RR + E I+ ++R Sbjct: 233 YCYPEEITDELIEVIKKEPKVCHYLDLPIQHASDSILKRMGRRTSKQELTDIVKKLRKEI 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDI + + I GFPGET+D M VD++ + + F YSP TP + M +Q+ E V Sbjct: 293 PDICLRTTLITGFPGETEDQHEELMQFVDEMEFDRLGVFTYSPEEDTPAAVMPDQIAEEV 352 Query: 387 KAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438 K ER Q L E Q+++F++A +G+ + V+IE ++ VGR+ P + + Sbjct: 353 KEER----QADLMELQQEIAFDNAENMIGREMLVMIEGKVADENAYVGRTYRDAPNVDGL 408 Query: 439 V-LNSKNHNI-GDIIKVRITDVKISTLYGELV 468 + +N++ I GD KV+IT L GEL+ Sbjct: 409 IFINTEEELISGDFAKVKITGALEYDLIGELL 440 >gi|212697105|ref|ZP_03305233.1| hypothetical protein ANHYDRO_01670 [Anaerococcus hydrogenalis DSM 7454] gi|212675880|gb|EEB35487.1| hypothetical protein ANHYDRO_01670 [Anaerococcus hydrogenalis DSM 7454] Length = 432 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 137/443 (30%), Positives = 234/443 (52%), Gaps = 28/443 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + + F +K+ GC++N Y+S +E++F +G+E+ D+AD+ V+NTC + + K Sbjct: 1 MSKTFNIKTLGCKVNQYESEAIEELFKKRGFEK--KEDNADIYVINTCTVTNMSDRKSRQ 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + + R KE D ++ V GC +Q +G+E+ + V++V+G + + +L E Sbjct: 59 TISKAR-------KENKDAIIAVIGCYSQVKGDEV-KEIEGVDIVLGSRNKEEVVDLCEN 110 Query: 143 ARFGKRVVDT----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 F V T ++ + + E L I N+ +++ IQ+GC+ +C++C++PY Sbjct: 111 --FISDHVKTKDVEEFKIGEAIEDLEIS----NQADMTRSYIKIQDGCNMYCSYCLIPYA 164 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG SR L ++DEA++L DNG EI L G +V ++ GK LD + D++ +++I Sbjct: 165 RGNIASRDLVSIIDEAKRLRDNGFKEIVLTGIHVASY-GKDLDLN-ISLIDVIEHIAKID 222 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R+R ++ PR + ++ D + HL +QSGSD +LK MNR++ +++ Sbjct: 223 GIERIRLSSMEPRHIDREFLQRMKDTKKACDHFHLSLQSGSDDVLKLMNRKYDTKIFKEK 282 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +D IR P+ +++D IVGFP E++ + T D V I +++ FKYS R GT +NM Sbjct: 283 VDLIREYFPNAGLTTDIIVGFPNESEKNHEQTKDFVRNIKFSKTHLFKYSKRDGTKAANM 342 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 QVD N K R L ++ F D +G+ + VL E + G G S V Sbjct: 343 KNQVDGNTKKRRSKELSVIEKKNSHEFLDKQIGKTLSVLFETKTELDGYKSGYSTNYLRV 402 Query: 439 VLNSKNHNIGDIIKVRITDVKIS 461 H D+ I D+KI+ Sbjct: 403 ------HTKDDVGINEIKDIKIT 419 >gi|284048079|ref|YP_003398418.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans DSM 20731] gi|283952300|gb|ADB47103.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans DSM 20731] Length = 437 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 139/445 (31%), Positives = 233/445 (52%), Gaps = 22/445 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N D+ ME +F G++ V+ + AD+ ++NTC + K + R Sbjct: 8 TLGCKVNQSDTASMEKLFRDAGFQIVDFEEPADICLINTCVVTNMGQSKSRKIIHRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + L+VV GC Q +E++ V++++G Q ++ EL+ R R G+ Sbjct: 65 ----ARRDPKPLIVVTGCYPQTSPDEVVHIDG-VDLIIGNQDRSKVVELV-RERLGESPD 118 Query: 151 DT------DYSVEDKFERL-SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D V +FE L + VD NR AFL IQEGCD++C +C++PY RG Sbjct: 119 EAPINAVHDLPVGREFEELDAAVDASRNR-----AFLKIQEGCDQYCAYCIIPYARGHLR 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SRSL + +E KL EI L+G ++ + GK + G + +LS + RL Sbjct: 174 SRSLDNIREEVAKLTAEQYKEIVLIGIHLGCY-GKEIPGGPHLSDAVKAALSAEPQVPRL 232 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R + ++ D L+ L +LHLP+Q+G D L M+R + ++ Q++++IR Sbjct: 233 RLGSLESVEVEDALLDLMAREPRLCAHLHLPLQAGCDSTLARMHRPYDTAKFAQLLEKIR 292 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S+ P++AI++D IVGFPGET++DF+A++D + + +++ F YS R GTP + M +Q+ Sbjct: 293 SLVPNVAITTDVIVGFPGETEEDFQASLDFIRQCRFSKIHIFPYSQRKGTPAAVMPDQIS 352 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 K ER+ L++ RE +++ +GQ VL E+ K G G +P V +S Sbjct: 353 NQEKQERVHRLEEVDREGNLAYRKEQIGQESTVLWERRNKNNGLWEGLTPGYVRVYADSP 412 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 + G I VR+ ++ L G ++ Sbjct: 413 ENMKGKISAVRLENLFEDGLKGGII 437 >gi|210612282|ref|ZP_03289230.1| hypothetical protein CLONEX_01431 [Clostridium nexile DSM 1787] gi|210151656|gb|EEA82663.1| hypothetical protein CLONEX_01431 [Clostridium nexile DSM 1787] Length = 440 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 152/453 (33%), Positives = 238/453 (52%), Gaps = 27/453 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FV S GC N+ D+ M + S+G++ V+S + AD+IV+NTC A E+ + Sbjct: 4 LFV-SLGCDKNLVDTEVMLGLLASRGHQMVDSEEIADVIVINTCCFIHDAKEESIQTILE 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + K K G ++V GC+AQ +EI+ V+ V+G +Y ++ E ++ A G Sbjct: 63 MAEYK----KAGSCKALIVTGCLAQRYKQEIIDEIEEVDAVLGTTSYDKIVEAIDEALAG 118 Query: 147 KRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V+ TD E +V G G A+L I EGCDK CT+C++P RG S Sbjct: 119 HTSVEMTDIDALPLVESKRLVTTG-----GHFAYLKIAEGCDKHCTYCIIPKIRGNFRSV 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +++ EA L+ GV EI L+ Q + GK L GEK + LL L +I GL +R Sbjct: 174 PIERLLKEAEDLVAQGVKEIILVAQETTLY-GKDLYGEK-SLHKLLRELCKISGLRWIRI 231 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P +++D LI+ + D + YL LP+Q SD ILK M RR + + +II ++R Sbjct: 232 LYCYPEEITDELIQVIKEEDKICNYLDLPIQHASDGILKRMGRRTSKEQLVEIIGKLRKE 291 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDIAI + I GFPGET + M+ VD++ + + F YSP TP + M +Q+ E+ Sbjct: 292 IPDIAIRTTLITGFPGETQEQHEELMEFVDEMEFDRLGVFTYSPEEDTPAAVMPDQIPED 351 Query: 386 VKAERLLCLQKKLRE--QQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437 VK +R Q +L E Q+++F+ + +G+ + V+IE ++ VGR+ P + Sbjct: 352 VKEDR----QAELMELQQEIAFDLAEEMIGREVLVMIEGKVADENAYVGRTYKDAPNVDG 407 Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 ++ + GD +VRIT L GE++ Sbjct: 408 LIFVESEEELMSGDFARVRITGALEYDLMGEII 440 >gi|197117015|ref|YP_002137442.1| ribosomal protein S12 methylthiotransferase [Geobacter bemidjiensis Bem] gi|238066226|sp|B5ED60|RIMO_GEOBB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|197086375|gb|ACH37646.1| ribosomal protein S12 methylthiotransferase [Geobacter bemidjiensis Bem] Length = 448 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 148/453 (32%), Positives = 238/453 (52%), Gaps = 33/453 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRN 89 S GC N+ D+ M YE AD+IV+NTC I+E E + + L Sbjct: 13 SLGCPKNLVDAEVMLGYLSQDEYEVTTDETQADIIVVNTCSFIKEAKQESIDTILDLADR 72 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 ++R K L++V GC+ Q +E+ + P V++ +G Y R+ E++ + + Sbjct: 73 KHDARCK-----LLIVTGCLPQRYQQELAKELPEVDIFIGTGDYPRIAEIIAEKKQTEEQ 127 Query: 150 V----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + D ++ D+ RL TA+L I EGC C++CV+P RG SR Sbjct: 128 LCYTGDPNFVYNDEVPRL-------QSSPHYTAYLKIAEGCSNNCSYCVIPSLRGGHRSR 180 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L+ ++ EA+ L++ GV E+ L+ Q++ A+ G+ L+G K + L+ L +++ L +R Sbjct: 181 PLATLLAEAKALVEGGVKELNLIAQDITAY-GRDLEG-KPSLELLIKELVKMEKLKWIRL 238 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P ++D LI+ + + YL LP+Q SD +L +M RR E R +I ++R Sbjct: 239 LYAYPDGVTDSLIQLIKEEPKVCKYLDLPIQHISDPVLSNMKRRSGEAEIRTLISKLRRE 298 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDIAI + IVGFPGET DDF+ + V++ + + F YS GTP + M +QV E Sbjct: 299 IPDIAIRTSLIVGFPGETTDDFKKLLQFVEQTRFDRLGVFCYSREDGTPAAEMPDQVSER 358 Query: 386 VKAERLLCLQKKLREQQ--VSF--NDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ 436 +K ER KKL Q VSF N V +VL+E + +E KG+ ++P + Sbjct: 359 IKRER----HKKLMRTQARVSFKHNRTLVDSEEDVLVEGYSEETELLLKGRSSRQAPDVD 414 Query: 437 SVV-LNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V + + N N+GDI++++ITD L GE+V Sbjct: 415 GLVYITAGNANVGDIVRLKITDSSDYDLIGEIV 447 >gi|182418337|ref|ZP_02949632.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237666343|ref|ZP_04526328.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377719|gb|EDT75263.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237657542|gb|EEP55097.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 466 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 138/442 (31%), Positives = 241/442 (54%), Gaps = 18/442 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M + F +GYE + + AD+ V+NTC + + +K + R R Sbjct: 39 TLGCRVNHYETEAMAEKFIREGYEITDFSNFADVYVVNTCSVTNMSDKKSRQIISRAR-- 96 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--R 148 RI E ++ GC +Q EE+ + V+VV+G + + + +A+ K + Sbjct: 97 ---RINENA--IIAAVGCYSQVSPEEVAKIEG-VDVVLGTRNKGDIVYYVNKAKDEKESQ 150 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 +V + +FE L+I + Y K AFL IQ+GC++FC +C++PYTRG S+ Sbjct: 151 IVVGEVLRNKEFEDLNIEE--YQDK--TRAFLKIQDGCNRFCAYCLIPYTRGAVCSKDPE 206 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V+ E +KL ++G EI L G + ++ G L+G+ + +L + ++ G+ R+R + Sbjct: 207 KVISEIKKLAEHGFKEIILSGIHTASY-GVDLEGD-VSLMTILEEIEKVDGIERVRIGSI 264 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P +D +I+ + L P HL +QSG D LK MNRR+TA EY + + +IR D Sbjct: 265 EPCFFTDSVIEKMKSMKKLCPQFHLSLQSGCDATLKRMNRRYTAKEYEEAVYKIRKNLKD 324 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +I++D IVGFPGETD++F T + + + + FK+SPR GT + M Q+D +K Sbjct: 325 ASITTDVIVGFPGETDEEFNLTYEYLKNLKLTKTHIFKFSPRKGTKAATMDNQIDGTIKE 384 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRS-PWLQSVVLNSKNHN 446 +R L + + +F+ + VG+ ++VL+E+ K+ G G + +++ ++N Sbjct: 385 KRSKALIDLNEKNEGNFSRSLVGRDMDVLVEQEVSKKPGVFEGYTRNYVKVEIVNGSEEI 444 Query: 447 IGDIIKVRITDVKISTLYGELV 468 IG I+ RI + + G+L+ Sbjct: 445 IGKIVPCRIEEANGDYVTGKLL 466 >gi|154505306|ref|ZP_02042044.1| hypothetical protein RUMGNA_02820 [Ruminococcus gnavus ATCC 29149] gi|153794349|gb|EDN76769.1| hypothetical protein RUMGNA_02820 [Ruminococcus gnavus ATCC 29149] Length = 440 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 150/452 (33%), Positives = 232/452 (51%), Gaps = 32/452 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N+ D+ M M S+GY+ V AD+IV+NTC + + E + + L Sbjct: 7 SLGCDKNLVDTEVMLGMLASRGYQMVEEETQADVIVINTCCFVHDAKEESIQNILEMAEY 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K R+K ++V GC+AQ +EIL P V+ V+G Y ++ + ++ A G Sbjct: 67 KKEGRLK-----ALIVTGCLAQRYRQEILDEIPEVDAVLGTTAYDKILDAIDEALKGHHT 121 Query: 150 V---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + DTD E + +RL G + A+L I EGCDK CT+C++P RG S Sbjct: 122 LTLADTDLLPEVETKRLVTTGGHF-------AYLKIAEGCDKHCTYCIIPKIRGNFRSVP 174 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + Q++ EA L + GV E+ L+ Q + GK L GEK + LL L +I G+ +R Sbjct: 175 MEQLLSEAEYLAEQGVKELILVAQETTLY-GKDLYGEK-SLHKLLRELCKISGIRWIRIL 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P ++ D LI+ + + YL LP+Q +D ILK M RR T E II ++R Sbjct: 233 YCYPEEIYDELIQTIKEEPKICHYLDLPIQHANDEILKRMGRRTTKQELIDIISKLRREI 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDIA+ + I GFPGET + M+ VD++ + + F YSP T + M Q++E V Sbjct: 293 PDIALRTTLITGFPGETKEQHEELMEFVDEMEFDRLGVFTYSPEEDTAAARMEGQIEEEV 352 Query: 387 KAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438 K ER Q +L E Q+++F+ A VG+ + V+IE ++ VGR+ P + + Sbjct: 353 KEER----QAELMELQQEIAFDTAENMVGKEVLVMIEGKVADENAYVGRTYRDAPNVDGL 408 Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + + + GD KV+++ L G L+ Sbjct: 409 IFVNTEEELMSGDFAKVKVSGAVDYDLIGGLI 440 >gi|291550943|emb|CBL27205.1| SSU ribosomal protein S12P methylthiotransferase [Ruminococcus torques L2-14] Length = 440 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 146/452 (32%), Positives = 234/452 (51%), Gaps = 32/452 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N+ D+ M M S+GYE N +AD+IV+NTC I + E + + L Sbjct: 7 SLGCDKNLVDTEVMLGMLASRGYEMTNDEQEADIIVINTCCFIHDAKEESIQNILEMAEY 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 KN K ++V GC+A+ +EIL P V+ V+G Y R+ + ++ A G+ Sbjct: 67 KKNGSAK-----ALIVTGCMAERYRQEILDEIPEVDEVLGTTAYDRILDAVDAALAGQHE 121 Query: 150 V---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V D D + +RL G + A+L I EGCDK CT+C++P RG S Sbjct: 122 VMTADLDALPLPETKRLVTTGGHF-------AYLKIAEGCDKHCTYCIIPKIRGNFRSVP 174 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + +++ EA+ L + GV E+ L+ Q + GK L GEK + LL L +I G+ +R Sbjct: 175 MERLLKEAQDLAEQGVKELILVAQETTLY-GKDLYGEK-SLPKLLRELCKISGIRWIRIL 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P +++D LI+ + + YL LP+Q +D ILK M RR + E I+ ++R Sbjct: 233 YCYPEEITDELIQVMKEESKICHYLDLPIQHANDTILKRMGRRTSKQELIDIVQKLRKEI 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDI + + I GFPGET + M+ +D + + + +F YSP TP + +Q+DE V Sbjct: 293 PDICLRTTLITGFPGETQEQHEEVMEFIDTLEFDRLGAFTYSPEEDTPAATFEDQIDEEV 352 Query: 387 KAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438 K +R Q + E Q+++F+ A +G+ + V+IE ++ VGR+ P + + Sbjct: 353 KEDR----QADIMELQQEIAFDKAEDMIGREVLVMIEGKVADENAYVGRTYRDAPNVDGL 408 Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + + + + GD KV++T L GEL+ Sbjct: 409 IFINTDVELISGDFAKVKVTGALDYDLIGELI 440 >gi|170592325|ref|XP_001900919.1| CDK5RAP1-like protein [Brugia malayi] gi|158591614|gb|EDP30219.1| CDK5RAP1-like protein, putative [Brugia malayi] Length = 453 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 143/452 (31%), Positives = 241/452 (53%), Gaps = 47/452 (10%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MNV D + + S GY + + +AD+I+L TC IRE A KV+ L +R + R Sbjct: 1 MNVNDVELVRSLLLSSGYVETDDVKEADIILLMTCSIREGAENKVWDELKVLRKI---RR 57 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 K+G +V V GC+A+ +L + V+VV GP +Y LP LL AR G ++ S Sbjct: 58 KKG---VVGVLGCMAERVRHNLLTCTENVDVVAGPDSYRDLPRLLAIARCGSMAINVQLS 114 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 VE+ + + V K TA+++I GCD CT+C+VPYTRG E SR ++ ++DE R Sbjct: 115 VEETYADVVPV---RKDKFSKTAYVSIMRGCDNMCTYCIVPYTRGRERSRPMNSILDEIR 171 Query: 216 KLIDNGVCEITLLGQNVNAWR-----------------GKGLDGE------KCTFSDLLY 252 +L D GV ++TLLGQNVN++R G + F LL Sbjct: 172 RLSDEGVKQVTLLGQNVNSYRDLSEISFLSANLAEPGVAPGFRTKYKPKRGGYXFLTLLD 231 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +S+I +R+R+T+ HP+D +I+ + + +HLP QSGS+ +L +M+R ++ Sbjct: 232 KVSQIDSEMRIRFTSPHPKDFPLEVIQLIKERSNICKQIHLPAQSGSNIVLDAMDRGYSR 291 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 Y +++ RI++V P+++++SDFI GF GET+D R ++DL+ + ++++ Sbjct: 292 ESYLELVHRIKTVLPNVSLTSDFIAGFCGETEDCHRESLDLIKH----KTKAYRH----- 342 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGR 431 + + V + VK R L RE + N++ +G VL+E+ K + L GR Sbjct: 343 -----LRDDVPKEVKNRRHQELAGAFRETALKHNESLLGTKQLVLLEETSKRSSEHLRGR 397 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463 + SV++N ++ +++++ D ++ + Sbjct: 398 TDGGVSVIINKYYNDGSGLVELKPGDYVVAKI 429 >gi|188585813|ref|YP_001917358.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350500|gb|ACB84770.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 446 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 137/454 (30%), Positives = 240/454 (52%), Gaps = 22/454 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE----RVNSMDDADLIVLNTCHIREKAAE 78 VP+ F+ ++GC++N YDS ++++F +G+E +D+ D+ ++NTC + A Sbjct: 4 VPRVKFI-TFGCKVNQYDSEALKELFQDRGFEISDWNPQELDNIDVAIINTCTVTHLADR 62 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 K IR LK + + ++ V GC Q + + + + V++V G + L E Sbjct: 63 KARQ---HIRKLK----RRNPNCVIAVTGCYPQTDPQTV-KALEGVDIVHGIEDRSGLVE 114 Query: 139 LLERARFGKRVVDTDYSVED-----KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193 L+E+A + + + D +FE L I + + FL IQEGCD+FC++C Sbjct: 115 LVEQALSKENIWQGAIHLHDSRPKGEFENLKI--KNFKKHDRTRHFLKIQEGCDQFCSYC 172 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 ++PY RG SR V+ E ++ + NG EI L G N+ A+ + + + LL Sbjct: 173 IIPYARGHLRSRPPEDVISEIKQAVSNGFKEIVLTGINLGAYGRE--NSNLPNLATLLDK 230 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 + +KG R+R ++ P++++ L++ + + + +LH+P+QSG + ILK+MNR ++ Sbjct: 231 IIHLKGDYRIRLSSCEPQEITIGLLELVTNSEKICKHLHIPLQSGDNEILKAMNRDYSKE 290 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 +YR+I+ R P IAI++D IVGFPGE+ + FR T + V KIG++ F+YSPR T Sbjct: 291 DYRKIVMAAREKSPSIAITTDIIVGFPGESANHFRNTKEFVKKIGFSDIHIFQYSPRKNT 350 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 P +QV K R L + R+ +++ + + + VL+EKH ++ V + Sbjct: 351 PAQEFSDQVHSKEKKARSQELIEISRDLSRVYHEQFIDKTVPVLVEKHEEDVASGVSDTY 410 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 + + S+ + I +V+I +YGEL Sbjct: 411 LKVTFNVESEINLYNKICQVQINSADEEMVYGEL 444 >gi|308800958|ref|XP_003075260.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri] gi|116061814|emb|CAL52532.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri] Length = 548 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 158/502 (31%), Positives = 244/502 (48%), Gaps = 71/502 (14%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R FV++YGCQMN DS + + + +S DA ++++NTC IRE A +V++ Sbjct: 43 ERVFVETYGCQMNANDSDVVRALLVEAKHAIASSASDATVVLVNTCAIRENAESRVWT-- 100 Query: 85 GRIRNLKNSRIKEGGDLLVV-VAGCVAQA-EGEEILRRSPIVNVVVGPQTYYRLPELLER 142 R+R L+ R G L V V GC+A+ +G+ + + ++VVGP Y + LL Sbjct: 101 -RLRQLRAERRAPGSRLRAVGVLGCMAERLKGKILSAEEGLADMVVGPDAYRDVVRLLRV 159 Query: 143 ARFG---KRVVDTDYSVEDKFERLSI---VDGGYN-----RKRGVT--AFLTIQEGCDKF 189 AR +R +T + D +R+++ +D Y R ++ A++++ GCD Sbjct: 160 AREESDRRRQRETRANTLDDEDRMNVMLSLDETYADVFPLRADPMSPQAYVSVTRGCDNM 219 Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC---- 245 C FCVVP+TRG E SR V++E RKLID GV EITLLGQNVN++ G Sbjct: 220 CAFCVVPFTRGRERSRPFESVLEECRKLIDQGVKEITLLGQNVNSYADASEVGTSAKTDA 279 Query: 246 -----------------------TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282 F+DL+ +++ I R+R+T+ HP+D D L++ Sbjct: 280 DAPFGAYAKGFTSVYKPKRVGARAFADLVEAVAAIDVECRVRFTSPHPKDFPDDLLRVIA 339 Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342 + + LH+P QSGS L+ M R +T Y ++I+R R + P +AISSDFI GF GE Sbjct: 340 NTPNVCKQLHMPAQSGSTSTLERMRRGYTREAYLELIERAREIIPGVAISSDFISGFCGE 399 Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402 ++D+ T+ L++ + Y A + + + E VK RL + + R Sbjct: 400 SEDEHAETLTLLETVRYEHARTR----------RGLRRRRPEEVKKRRLAEVIETFRRCA 449 Query: 403 VSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVLNSKNHNI------------- 447 N VG VLIE K+ + ++ GRS + VV+ K Sbjct: 450 ADVNAREVGCTHLVLIEGASKKNPESQMSGRSDTGKRVVVQGKRTKANALDGDSEEVDIK 509 Query: 448 -GDIIKVRITDVKISTLYGELV 468 GD + +I + STL E V Sbjct: 510 SGDYVVAKIVEAGASTLVAEPV 531 >gi|331089440|ref|ZP_08338339.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae bacterium 3_1_46FAA] gi|330404808|gb|EGG84346.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae bacterium 3_1_46FAA] Length = 440 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 150/452 (33%), Positives = 239/452 (52%), Gaps = 32/452 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N+ D+ M + S+GYE + AD+IV+NTC I + E + + L Sbjct: 7 SLGCDKNLVDTEVMLGLLASRGYEMTDDERQADIIVINTCCFIHDAKEESIQNILEMAEY 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K+ ++K ++V GC+AQ +EIL P V+ V+G Y ++ + ++RA G++ Sbjct: 67 KKSGQVK-----ALIVTGCLAQRYRQEILDEIPEVDEVLGTTAYDKILDAVDRALEGEQG 121 Query: 150 V---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + D + +RL G + A+L I EGCDK CT+C++P RG S Sbjct: 122 IILSDLNALPVSGAKRLVTTGGHF-------AYLKIAEGCDKHCTYCIIPKIRGNFRSVP 174 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + +++ EA++L + GV E+ L+ Q + GK L GEKC L+ L +I G+ +R Sbjct: 175 MERLIKEAKELAEQGVKELILVAQETTLY-GKDLYGEKC-LHRLVEELCKIAGIRWIRIL 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P +++D LI+ + YL LP+Q SD ILK M RR + E I+ ++R Sbjct: 233 YCYPEEITDELIEVIKKEPKVCHYLDLPIQHASDSILKRMGRRTSKQELTDIVKKLRKEI 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDI + + I GFPGET+D M VD++ + + F YSP TP + M +Q+ E V Sbjct: 293 PDICLRTTLITGFPGETEDQHEELMQFVDEMEFDRLGVFTYSPEEDTPAAVMPDQIAEEV 352 Query: 387 KAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438 K ER Q L E Q+++F++A +G+ + V+IE ++ VGR+ P + + Sbjct: 353 KEER----QADLMELQQEIAFDNAENMIGREMLVMIEGKVADENAYVGRTYRDAPNVDGL 408 Query: 439 V-LNSKNHNI-GDIIKVRITDVKISTLYGELV 468 + +N++ I GD KV+IT L GEL+ Sbjct: 409 IFINTEEELISGDFAKVKITGALEYDLIGELL 440 >gi|160939106|ref|ZP_02086457.1| hypothetical protein CLOBOL_04000 [Clostridium bolteae ATCC BAA-613] gi|158438069|gb|EDP15829.1| hypothetical protein CLOBOL_04000 [Clostridium bolteae ATCC BAA-613] Length = 459 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 152/458 (33%), Positives = 241/458 (52%), Gaps = 33/458 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F S GC N+ D+ +M + +G + +AD+I++NTC A E+ + + Sbjct: 13 KLFCVSLGCDKNLVDTEKMLGLLNGRGITFTDDETEADVILVNTCCFIGDAKEESVNTI- 71 Query: 86 RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 L +R KE G+L ++VAGC+AQ +EIL P V+ ++G +Y + ++L+ Sbjct: 72 ----LDMARYKEEGNLKALLVAGCLAQRYKQEILDEIPEVDAILGTTSYEEVAKVLDEVL 127 Query: 145 FGKRVVDT----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G+ D S + E +V G G AFL I EGCDK CT+C++PY RG Sbjct: 128 AGRTGTHLSCFHDLSELPQTEVRRVVTTG-----GHYAFLKIAEGCDKRCTYCIIPYLRG 182 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S + Q+V EAR+L + GV E+ L+ Q + G+ L GEKC LL L++I G+ Sbjct: 183 PYRSVPIEQLVKEARQLAEAGVKELILVAQETTLY-GRDLYGEKC-LPRLLRELAKIPGI 240 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R +P +++D LI+ + + YL +P+Q SDRILK M RR E + I Sbjct: 241 YWIRIQYCYPEEITDELIETIRTEEKVCNYLDIPIQHASDRILKRMGRRTNKEELMERIG 300 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R PDIAI + I GFPGET+ D MD V+++ + + F YS TP + + Sbjct: 301 KLRQEIPDIAIRTTLISGFPGETESDHEELMDFVNEMEFERLGVFAYSAEEDTPAFSYPD 360 Query: 381 QVDENVKAER---LLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS--- 432 QV E VK ER ++ LQ Q ++F + VG+++ VLIE ++ VGR+ Sbjct: 361 QVPEEVKEERRDEIMELQ-----QDIAFEHCENMVGRVLTVLIEGKVVDEPAYVGRTYMD 415 Query: 433 -PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467 P + ++ + + + GD ++V++T L GE+ Sbjct: 416 APNVDGLIFVNGDVELMSGDFVRVKVTGAAEYDLIGEV 453 >gi|253699275|ref|YP_003020464.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. M21] gi|251774125|gb|ACT16706.1| MiaB-like tRNA modifying enzyme YliG [Geobacter sp. M21] Length = 448 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 149/461 (32%), Positives = 244/461 (52%), Gaps = 33/461 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVY 81 + ++ + S GC N+ D+ M YE AD+IV+NTC I+E E + Sbjct: 5 IKEKVSLVSLGCPKNLVDAEVMLGYLSRDEYEVTTDETQADIIVVNTCSFIKEAKQESID 64 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140 + L ++R K L++V GC+ Q +E+ + P V++ +G Y R+ E++ Sbjct: 65 TILDLADRKHDARCK-----LLIVTGCLPQRYQQELAKELPEVDIFIGTGDYPRIAEIVA 119 Query: 141 ERARFGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 E+ + +++ D ++ D+ RL TA+L I EGC C++CV+P Sbjct: 120 EKKQTDEQLCYTGDPNFVYNDEVPRL-------QSSPHYTAYLKIAEGCSNNCSYCVIPS 172 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG SR L+ ++ EA+ LI+ GV E+ L+ Q++ A+ G+ L+G + L+ L+++ Sbjct: 173 LRGGHRSRPLATLLAEAKTLIEGGVKELNLIAQDITAY-GRDLEGTP-SLELLIKELAKM 230 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 + L +R ++P ++D LI+ D + YL LP+Q SD +L +M RR E R Sbjct: 231 EKLKWIRLLYAYPDGVTDSLIQLIKDEPKVCKYLDLPIQHISDPVLSNMKRRSGETEIRN 290 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +I ++R PDIAI + IVGFPGET +DF+ + V++ + + F YS GTP + Sbjct: 291 LIAKLRREIPDIAIRTSLIVGFPGETSEDFKKLLQFVEETRFDRLGVFCYSREEGTPAAQ 350 Query: 378 MLEQVDENVKAERLLCLQKKLREQQ--VSF--NDACVGQIIEVLIEKHGKE-----KGKL 428 M +QV E +K ER KKL Q VSF N V +VL+E +E KG+ Sbjct: 351 MPDQVSERIKRER----HKKLMRTQARVSFKHNRTLVDSEEDVLVEGFSEETELLLKGRS 406 Query: 429 VGRSPWLQSVV-LNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++P + +V + + N N+GDI++++ITD L GE+V Sbjct: 407 SRQAPDVDGLVYITAGNANVGDIVRLKITDSSDYDLIGEIV 447 >gi|307243292|ref|ZP_07525459.1| MiaB-like protein [Peptostreptococcus stomatis DSM 17678] gi|306493310|gb|EFM65296.1| MiaB-like protein [Peptostreptococcus stomatis DSM 17678] Length = 431 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 138/433 (31%), Positives = 237/433 (54%), Gaps = 24/433 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M +MF GYE V S D AD+ V+NTC + + K ++ R++ Sbjct: 8 TLGCKVNQYETEAMLEMFEKNGYENVGSEDYADVYVINTCTVTHMSDRKSRQYIRRVK-- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K+ + ++ V GC +Q EEIL VN+V+G + + +++ +V Sbjct: 66 -----KKNPNSIIAVVGCYSQVSPEEILDIED-VNLVMGTNDRRTIVDKVDKIDSNSKVS 119 Query: 151 DTDYSVE-DKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 D ++ +FE + I ++ G T AF+ IQ+GCD++C++C++PY RG SR Sbjct: 120 TVDDIMKVREFEEIEI-----SQTNGKTRAFIKIQDGCDRYCSYCIIPYARGRIRSRDRQ 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +++E KL NG E+ L G +V ++ G+ LD E ++ +++++G+ R+R ++ Sbjct: 175 SIIEEIEKLAANGYKEVVLTGIHVASY-GRDLD-EDIDILTVIKDVNKVEGIERIRLSSV 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ I +D L+P+ HL +QSG D LK MNRR+T +Y++ +D +R+ P Sbjct: 233 EPVLFTEDFIDQISKIDKLVPHYHLSLQSGCDATLKRMNRRYTTEDYKRTVDNLRARIPR 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +++++D IVGFPGET+++F T+ + + FKYSPR GTP + M +QVD +K Sbjct: 293 VSLTTDVIVGFPGETNEEFSQTLAYLKDLKLMHMHVFKYSPRKGTPAAVMEDQVDPQMKQ 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 R LL L K + F D + ++VL E+ K+ G G + + + S Sbjct: 353 MRSDSLLALSTKNFKL---FADQFINTDLKVLFEEVDKD-GYYEGLTDNYMRIKVRSDLD 408 Query: 446 NIGDIIKVRITDV 458 G I+ VRI ++ Sbjct: 409 IRGQILPVRIEEI 421 >gi|304439566|ref|ZP_07399471.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371945|gb|EFM25546.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii ATCC BAA-1640] Length = 433 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 133/391 (34%), Positives = 229/391 (58%), Gaps = 31/391 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSFLG 85 F + + GC++N Y+S M+++F GY V+S D AD+ V+NTC + + K ++ Sbjct: 4 FSILTLGCKVNQYESEAMKEIFEKNGYIEVDSETDVADVYVVNTCTVTNLSDRKSRQYIR 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R + +E D +V V GC +Q +E+ + V++++G R+ EL+E + Sbjct: 64 RAK-------RENPDSIVCVVGCYSQVSPDEV-QAIEGVDIIMGTTDRSRIFELVENFKK 115 Query: 146 GKRVVDTDYSVE--DKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIE 202 K + S++ +F+ + I +++ +T +++ +Q+GC+++CT+C++PY RG Sbjct: 116 DKNQISIVKSLKGFTEFQHIEI-----DKESEMTRSYMKVQDGCNRYCTYCIIPYARGPI 170 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR++ V+EA++L + G E+ L G ++ ++ GK L E+ DL+ ++++ G+ R Sbjct: 171 RSRTIEDSVEEAKRLSEAGYKELVLTGIHIGSY-GKDLGDER--LVDLIEEITKVDGIER 227 Query: 263 LRYTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 +R ++ P RD + IKA G + + HL +QSGS+ +LK+MNRR+T EY + Sbjct: 228 IRLSSIEPITITRDFLE-RIKATGKV---CDHFHLSLQSGSNAVLKAMNRRYTREEYIET 283 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 D IR P + +++D IVGFPGETD+DF T+DLV ++ +++ FKYS R GTP + M Sbjct: 284 CDLIREYYPYVGLTTDIIVGFPGETDEDFEDTVDLVKRVEFSKIHVFKYSKRSGTPAAEM 343 Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFN 406 QVD N+K E RLL L K+ E+ + N Sbjct: 344 KNQVDGNIKIERSNRLLELSDKMMERFIEKN 374 >gi|225568730|ref|ZP_03777755.1| hypothetical protein CLOHYLEM_04809 [Clostridium hylemonae DSM 15053] gi|225162229|gb|EEG74848.1| hypothetical protein CLOHYLEM_04809 [Clostridium hylemonae DSM 15053] Length = 427 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 128/412 (31%), Positives = 224/412 (54%), Gaps = 31/412 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + + GC++N Y++ M+++ GYE V + AD+ ++NTC + A K L Sbjct: 2 KKVALHNLGCKVNAYETEAMQELLAQHGYEIVPFEEGADVYIINTCTVTNMADRKSRQML 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--- 141 R R + S + +V AGC QA GE+ +++V+G L +LE Sbjct: 62 HRARKMNPSAV-------IVAAGCYVQARGEDA---DDCIDIVIGNNRKKDLIRILEEYE 111 Query: 142 --RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 R G+ ++D D++ D++E L++ + + A++ +Q+GC++FC++C++PY R Sbjct: 112 DGRWETGEGLLDIDHT--DEYEELNVSRTAEHTR----AYIKVQDGCNQFCSYCIIPYAR 165 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G SR V+ E R+L + G E+ L G +++++ G+D T DLL + + G Sbjct: 166 GRVRSRKRESVLAEVRRLAEGGYKEVVLTGIHLSSY---GVD----TGDDLLRLIEAVHG 218 Query: 260 ---LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + R+R + PR +++ +A L + P+ HL +QSG + LK MNRR+TA EY Sbjct: 219 TDGIERIRLGSLEPRIVTEEFAQALAGLPKICPHFHLSLQSGCNATLKRMNRRYTAEEYF 278 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 + + +R D A+++D IVGFPGETD +F + +D++ + + FKYS R GT + Sbjct: 279 EKCELLRRYFRDPALTTDVIVGFPGETDAEFEESRAFIDRVDFYETHVFKYSKREGTKAA 338 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 M +QV + VK R L + R +Q ++ + +G +EVL+E+ G+L Sbjct: 339 GMEDQVPDEVKTARSSVLLELSRRKQAAYEEKLIGTTVEVLMEETVMRGGEL 390 >gi|325290538|ref|YP_004266719.1| RNA modification enzyme, MiaB family [Syntrophobotulus glycolicus DSM 8271] gi|324965939|gb|ADY56718.1| RNA modification enzyme, MiaB family [Syntrophobotulus glycolicus DSM 8271] Length = 464 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 146/456 (32%), Positives = 237/456 (51%), Gaps = 40/456 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+ + GC++N +S + +F GY+ V ++ D+IV+NTC + + K + Sbjct: 14 KKVFLATLGCKVNQSESEALAQLFADHGYDVVEDKENPDIIVINTCTVTGTGSSKSRKLI 73 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R+ IKE + V GC +Q E++ V++V+G + + E LE++ Sbjct: 74 RRM-------IKEHPQSFIAVMGCYSQL-NPEVVAALEGVDLVLGTKDRLTILEHLEKSW 125 Query: 145 FG---------KRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 FG KR T Y + ++E + +V RG A + IQ+GC++FC++ Sbjct: 126 FGHIGSIEAGGKRSALKAVTQYDDQPEYEEMPLVK---QESRG-RAMIKIQDGCNQFCSY 181 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKC--T 246 C+VP RG SR ++ +EAR L+ G E+ L G ++ W G G+ Sbjct: 182 CIVPLARGPSRSRPPEKIEEEARMLLRGGYKELVLTGIHIGVYGRDWNRGGETGKDTGDE 241 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA-HGDLDVLMPYLHLPVQSGSDRILKS 305 LL ++ + GL RLR + P+++S L++ + V+ P+ H+P+QSGSD +LK Sbjct: 242 LGCLLDRIAGLPGLARLRLGSIEPKEISSGLLQVIAKNQKVVCPHFHIPLQSGSDSVLKR 301 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R +T EY ++DRIRS P AIS+D + GFPGET ++ +M+ + K A F Sbjct: 302 MRRPYTTAEYWDLLDRIRSRFPQAAISADVMTGFPGETREEHTESMEFIQKCRLADLHVF 361 Query: 366 KYSPRLGTPGSNM---LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-- 420 YS R GTP +++ +E+ ++ V+A+ LL L K RE VS + + + IEVL+EK Sbjct: 362 PYSRRPGTPAADLGGQIEKREKTVRAKELLELGKTSRENYVS---SWIKEEIEVLVEKIA 418 Query: 421 -HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455 G +G LN + IGDII+VR+ Sbjct: 419 ATGNARGYTANYIEVEIPAELNFGDWKIGDIIRVRL 454 >gi|75764337|ref|ZP_00743864.1| tRNA 2-methylthioadenosine synthase homolog [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488177|gb|EAO51866.1| tRNA 2-methylthioadenosine synthase homolog [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 427 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 135/416 (32%), Positives = 227/416 (54%), Gaps = 21/416 (5%) Query: 47 MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106 MF GYER AD+ V+NTC + +K + R +++ D ++ V Sbjct: 1 MFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRA-------VRQNPDAVICVT 53 Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK--FERLS 164 GC AQ EI+ P V++VVG Q ++ +E R ++ ++ ++ +E L Sbjct: 54 GCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYEEL- 111 Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224 D Y R A L IQEGC+ FCTFC++P+ RG+ SR +V+ +A++L+D G E Sbjct: 112 --DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 168 Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283 I L G + + G D + + LL + +E+ GL RLR ++ +SD +I+ Sbjct: 169 IVLTGIHTGGY---GEDIKDYNLAGLLRDMEAEVGGLKRLRISSIEASQISDEVIEVLDK 225 Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343 +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P +AI+SD IVGFPGET Sbjct: 226 SEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPGET 285 Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQV 403 +++F T + + + +++ F YS R GTP + M +QV E+VK +R+ L + + Sbjct: 286 EEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQLAK 345 Query: 404 SFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRIT 456 + A G+++E++ E K G +G VG + +V IG ++KV+IT Sbjct: 346 EYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKIT 401 >gi|167747072|ref|ZP_02419199.1| hypothetical protein ANACAC_01784 [Anaerostipes caccae DSM 14662] gi|167654032|gb|EDR98161.1| hypothetical protein ANACAC_01784 [Anaerostipes caccae DSM 14662] Length = 439 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/434 (31%), Positives = 228/434 (52%), Gaps = 18/434 (4%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V + GC++N Y+S M DM G E V+ + AD+ ++NTC + A K L R + Sbjct: 10 VVTLGCKVNQYESDAMFDMLTDAGAEIVSPKEGADIYIVNTCSVTNIAERKSRQMLHRAK 69 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L D +V GC AQ G+E L++ P++++++G L +LE+ G R Sbjct: 70 KLNP-------DTVVAAVGCYAQV-GKEELKKDPLIDLIIGNNKKKDLIPILEKYFEGHR 121 Query: 149 --VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D S ++E L + + A++ +Q+GC++FC++C++PY RG SR Sbjct: 122 RDAEVLDLSSGSEYEALHV----RHLNEHTRAYIKVQDGCNQFCSYCIIPYARGRVRSRD 177 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + V+ E R L NG E + G +V ++ G LDG+K DLL + ++ G+ R+R Sbjct: 178 MEDVLSEIRGLAQNGCREFVITGIHVCSY-GTDLDGDK-GLIDLLEEIGKVGGVDRIRLG 235 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P +++ +K ++ P+ HL +QSG D LK MNR++T E R+ + +R Sbjct: 236 SLEPGIITEDFVKRLQSIEQFCPHFHLSLQSGCDATLKRMNRKYTTDEIREKAEILRKAY 295 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 D A+++D IVGFPGET+++F AT +++IG + FKYS R GT + M +QV++ Sbjct: 296 EDPALTTDIIVGFPGETEEEFEATRKFLEEIGLYEMHVFKYSKRAGTRAAVMEDQVNDQE 355 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVLNSKN 444 KA R L E + +F + +G +VLIE+ + VG + V + S+ Sbjct: 356 KARRSAVLIAMNEEHKNAFENRQIGTRRKVLIEEKLRNSSGNFYVGHTKEYVKVAVESEE 415 Query: 445 HNIGDIIKVRITDV 458 I++V +T + Sbjct: 416 PLENQIVEVELTGI 429 >gi|327440950|dbj|BAK17315.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046] Length = 449 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 140/449 (31%), Positives = 246/449 (54%), Gaps = 27/449 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + + GC++N Y++ + +F QGYER AD+ V+NTC + +K + R Sbjct: 11 LHTLGCKVNHYETEAIWQLFKEQGYERTEFDHQADVYVINTCTVTNTGDKKSRQVIRRA- 69 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 I++ D ++ V GC AQ EI+ P V++VVG Q ++ +++ R ++ Sbjct: 70 ------IRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIDQYRNERQ 122 Query: 149 VVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++ ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 123 PINAVRNIMKNRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRD 178 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRY 265 +V+ +A++L+D G EI L G + G G D + + LL L +++KGL RLR Sbjct: 179 PEEVIRQAQQLVDAGYLEIVLTGIHTG---GYGQDFKDYNLAQLLRDLEAQVKGLKRLRI 235 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ ++D +I + ++++ +LH+P+QSGSD +LK M R++T + + +++++ Sbjct: 236 SSIEASQLTDEVIDVLQNSEIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFAERLEKLKIA 295 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD+A++SD IVGFPGET+++F T + + +++ F YS R GTP + M +QVDE Sbjct: 296 LPDLAVTSDVIVGFPGETEEEFMETFNFIRDHKFSELHVFPYSQRTGTPAARMEDQVDEE 355 Query: 386 VKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK---LVGRSPWLQSVV 439 +K E RL+ L +L ++ S + G+++EV+ E+ K+ VG + V+ Sbjct: 356 IKNERVHRLIALNDQLAKEYASRFE---GEVLEVIPEERFKDSDNENLYVGYTTNYLKVI 412 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 +G ++KV++T G+ V Sbjct: 413 FEGAEEMVGQLVKVKVTKAGYPYNEGQFV 441 >gi|309388923|gb|ADO76803.1| RNA modification enzyme, MiaB family [Halanaerobium praevalens DSM 2228] Length = 438 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/435 (31%), Positives = 237/435 (54%), Gaps = 28/435 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + D+F GY+ V+ + AD+ ++N+C + +AA K R + Sbjct: 11 TLGCKVNQYETEAVIDIFLENGYQIVDFSEKADVYIVNSCTVTNEAARKTRQIARRAK-- 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ + LV + GC QA +E+ R ++ V+G + E GK + Sbjct: 69 -----RKYSNSLVAIVGCYTQAFPDEV-RNIEEIDFVMGSNNKAEILAKAEEMLAGKNIN 122 Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 +Y ++E L + N R A + I++GC++FC++C++PY RG SR Sbjct: 123 SELKEYQQLKEYEDLKL-KSLSNTTR---ANVKIEDGCNQFCSYCIIPYARGPVRSRKKE 178 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +E ++L GV EI L G ++ A+ G D G K + L+ SL+EIK L R+R ++ Sbjct: 179 SITEEVKRLSKQGVKEIVLTGTHLGAY---GSDKGNKKALAQLMESLTEIKSLKRVRLSS 235 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++ +I + D+ P+LHLP+QSGS++ILK+MNR +T E+++ + ++R P Sbjct: 236 IEGTEIDQGIINLISESDIFCPHLHLPLQSGSNQILKAMNRPYTVEEFKKTVAKLRKKIP 295 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D+AI++D IVGFPGET+ F T+ +V +I +A+ F YS R GTP + M EQ++ N+ Sbjct: 296 DLAITTDVIVGFPGETEKTFAETLKVVKEISFAKVHVFPYSAREGTPAAKM-EQLNGNIV 354 Query: 388 AERLLCLQKKLR----EQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNS 442 E KKLR +++ +G+ +VLIE+ K L+ G + V+++ Sbjct: 355 KE----YSKKLRLANEALMLNYQKEFIGKTKKVLIEEVRDHKTNLLTGYTDNYLKVLISG 410 Query: 443 KNHNIGDIIKVRITD 457 + ++KV++ + Sbjct: 411 SDALKNSLVKVKLEE 425 >gi|317056417|ref|YP_004104884.1| MiaB-like tRNA modifying enzyme [Ruminococcus albus 7] gi|315448686|gb|ADU22250.1| MiaB-like tRNA modifying enzyme [Ruminococcus albus 7] Length = 434 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 140/449 (31%), Positives = 234/449 (52%), Gaps = 22/449 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F ++GC++N Y++ + + F +G + AD+ V+N+C + E+A K L Sbjct: 2 KIFYYTFGCKVNQYETENIRERFEQEGDTAAADIASADVCVINSCTVTEQADSKCMQMLR 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-AR 144 RIR + + V+AGC QA ++ + + +++VG R+PE +R + Sbjct: 62 RIRKVSPRAV-------TVLAGCFPQAFSDKAEKLTE-CDIIVGTDDKGRIPEFTDRFMK 113 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+R++ K E+ D N+ G +++ IQ+GCD +C++C++PY RG Sbjct: 114 TGERIISIR-----KHEKGEKFDTMTNKCSGEKTRSYIKIQDGCDCYCSYCIIPYARGHV 168 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S+ + VV EA + I G E+ L G N+ + G+ L E+ T +D++ + + G R Sbjct: 169 RSKPMEDVVREASENIAAGHKELILTGINL-CFYGRDL-SERPTLTDVVEKVCSLDGEFR 226 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R + P M IK LD L P+ HL +QSG D LK+MNRR+ + Y + I Sbjct: 227 VRLGSIEPEMMLADDIKRLSVLDKLCPHFHLSLQSGCDSTLKNMNRRYDSSGYASLCATI 286 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ PD A+++D +VGFPGE + F ++ V++I +A+A F YS R GT + +QV Sbjct: 287 RNYFPDCALTTDIMVGFPGEDEKAFEESLSFVEEIAFAEAHIFPYSRRAGTKADSFTDQV 346 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL-- 440 +++K ER + + E + F CVG++ +VL E+ E G +P +V + Sbjct: 347 PQHIKHERAKRMAEVCAESKSGFLAGCVGKVFDVLFERE-TEADWHSGHAPNYVTVKVKR 405 Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGELV 468 NS + ++ I KVRI YGE V Sbjct: 406 NSPSDSLRRQIRKVRIISSDKEVCYGEFV 434 >gi|168179386|ref|ZP_02614050.1| RNA modification enzyme, MiaB family [Clostridium botulinum NCTC 2916] gi|182669715|gb|EDT81691.1| RNA modification enzyme, MiaB family [Clostridium botulinum NCTC 2916] Length = 432 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/442 (30%), Positives = 240/442 (54%), Gaps = 22/442 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++NVY++ M + F QGYE V+ + AD+ V+NTC + +K + R R Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149 ++ ++ V GC +Q EE+ + V+VV+G + + + RA K +V Sbjct: 65 -----RQNSKAIIAVVGCYSQIAPEEVSKIDG-VDVVLGTRNKGDIVYWVNRAMEEKNQV 118 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ + +K FE L+I + Y K AFL IQ+GC++FC++C++P+ RG S+ Sbjct: 119 IEVKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++++E +KL +G EI L G ++ ++ G L+G K + +L + +++G+ R+R + Sbjct: 175 KIMEEVKKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEEIDKVEGIERIRIGSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ I L P+ HL +QSG + LK MNR++T +Y++I+ +R+ Sbjct: 233 DPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIES 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I++D IVGFPGET+++F T + + I ++ FK+SPR GT M QVD +K Sbjct: 293 VSITTDIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVDGKIKE 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER ++ L K L ++ F + + + + VL E+ KEKG G +P + S Sbjct: 353 ERSNKIINLDKDLEKE---FMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSSKD 409 Query: 446 NIGDIIKVRITDVKISTLYGEL 467 G+II + +V + GE+ Sbjct: 410 ITGEIINTTLKEVSKDFIKGEI 431 >gi|168181641|ref|ZP_02616305.1| RNA modification enzyme, MiaB family [Clostridium botulinum Bf] gi|237796408|ref|YP_002863960.1| MiaB family RNA modification protein [Clostridium botulinum Ba4 str. 657] gi|182675137|gb|EDT87098.1| RNA modification enzyme, MiaB family [Clostridium botulinum Bf] gi|229261767|gb|ACQ52800.1| RNA modification enzyme, MiaB family [Clostridium botulinum Ba4 str. 657] Length = 432 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/442 (30%), Positives = 239/442 (54%), Gaps = 22/442 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++NVY++ M + F QGYE V+ + AD+ V+NTC + +K + R R Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149 ++ ++ V GC +Q EE+ + V+VV+G + + + RA K +V Sbjct: 65 -----RQNSKAIIAVVGCYSQIAPEEVSKIDG-VDVVLGTRNKGDIVYWVNRAMEEKNQV 118 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ + +K FE L+I + Y K AFL IQ+GC++FC++C++P+ RG S+ Sbjct: 119 IEIKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++++E KL +G EI L G ++ ++ G L+G K + +L + +++G+ R+R + Sbjct: 175 KIMEEVEKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEEIDKVEGIERIRIGSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ I L P+ HL +QSG + LK MNR++T +Y++I+ +R+ Sbjct: 233 DPTFFTEEEIIGISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIES 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I++D IVGFPGET+++F T + + I ++ FK+SPR GT M QVD +K Sbjct: 293 VSITTDIIVGFPGETEEEFNKTYEFLKGIKLSKMHVFKFSPRKGTRAEEMKNQVDGKIKE 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER ++ L K L ++ F + + + + VL E+ KEKG G +P + S Sbjct: 353 ERSNKIINLDKDLEKE---FMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSSKD 409 Query: 446 NIGDIIKVRITDVKISTLYGEL 467 G+II + +V + GE+ Sbjct: 410 ITGEIINTTLKEVSKDFIKGEI 431 >gi|227499809|ref|ZP_03929904.1| 2-methylthioadenine synthetase [Anaerococcus tetradius ATCC 35098] gi|227218113|gb|EEI83381.1| 2-methylthioadenine synthetase [Anaerococcus tetradius ATCC 35098] Length = 431 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 139/445 (31%), Positives = 244/445 (54%), Gaps = 21/445 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + + GC++N Y+S +E++F S+GY++ D AD+ V+NTC + + K + R Sbjct: 5 FNIITLGCKVNQYESEAVEEIFKSRGYKK--KQDGADIYVINTCTVTNMSDRKSRQMISR 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 R ++ + ++ V GC +Q + +E+L V++V+G + + +L E Sbjct: 63 AR-------RDNPEAVIAVMGCYSQVKPDEVLAIEG-VDIVLGSRNKEEVVDLCEDVLQN 114 Query: 147 KRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K +D S+ + E L I N++ A++ IQ+GC+ +C++C++PY RG +S Sbjct: 115 KTAIDRVISLSESKSIEELEI----SNQEDMTRAYMKIQDGCNMYCSYCLIPYARGNIVS 170 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + + +EA +L NG EI L G +V ++ GK L K D++ +++ G+ R+R Sbjct: 171 RDMESIKEEAIRLAKNGYKEIVLTGIHVASY-GKDLKNGK-RLIDVIEEVAKTDGIERIR 228 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ PR ++ ++ + HL +QSGSD ILK+MNR++ Y Q + IR Sbjct: 229 LSSMEPRHITKDFLERMKATRKACDHFHLSLQSGSDEILKAMNRKYDTEIYEQKVKLIRE 288 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 V P+ I++D IVGFP ET+++ R T + V KI +++ FKYS R GT ++M +VD Sbjct: 289 VFPNAGITTDIIVGFPTETEENHRQTKEFVKKIKFSKTHLFKYSKRDGTKAADMKPEVDG 348 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQSVVLNSK 443 NVK +RL L++ + + +F +G+ + VL E G G S +L+ V + Sbjct: 349 NVKRQRLKELEEIEKANRENFLKNQIGKTLSVLFESKSDIDGFKSGYSTNYLRVNVKDEI 408 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 ++N +I V IT++K L G+++ Sbjct: 409 SNN--EIRDVLITEIKDDELVGKVL 431 >gi|170758363|ref|YP_001788268.1| RNA modification protein [Clostridium botulinum A3 str. Loch Maree] gi|169405352|gb|ACA53763.1| RNA modification enzyme, MiaB family [Clostridium botulinum A3 str. Loch Maree] Length = 432 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 136/442 (30%), Positives = 240/442 (54%), Gaps = 22/442 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++NVY++ M + F QGYE V+ + AD+ V+NTC + +K + R R Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149 ++ ++ V GC +Q EE+ + V+VV+G + + + RA K +V Sbjct: 65 -----RQNSKAIIAVVGCYSQIAPEEVSKIDG-VDVVLGTRNKGDIVYWVNRAMEEKNQV 118 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ + +K FE L+I + Y K AFL IQ+GC++FC++C++P+ RG S+ Sbjct: 119 IEVKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++++E +KL +G EI L G ++ ++ G L+G K + +L + +++G+ R+R + Sbjct: 175 KIMEEVQKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEEIDKVEGIQRIRIGSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ I L P+ HL +QSG + LK MNR++T +Y++I+ +R+ Sbjct: 233 DPTFFTEEEIMRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIES 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I++D IVGFPGET+++F T + + I ++ FK+SPR GT M QVD +K Sbjct: 293 VSITTDIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVDGKIKE 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER ++ L K L ++ F + + + + +L E+ KEKG G +P + S Sbjct: 353 ERSNKIINLDKDLEKE---FMNKFIEKEMPILYEQETKEKGIFEGYTPNYIKIYSKSSKD 409 Query: 446 NIGDIIKVRITDVKISTLYGEL 467 G+II + +V + GE+ Sbjct: 410 ITGEIINTTLKEVSKDFIKGEI 431 >gi|209528374|ref|ZP_03276821.1| MiaB-like tRNA modifying enzyme YliG [Arthrospira maxima CS-328] gi|209491190|gb|EDZ91598.1| MiaB-like tRNA modifying enzyme YliG [Arthrospira maxima CS-328] Length = 439 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 137/441 (31%), Positives = 223/441 (50%), Gaps = 27/441 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N D+ M + GY+ ++ + AD +V+NTC E A E+ + I L Sbjct: 13 GCEKNRIDTEHMIGLLAEAGYQVDSNEEAADYVVVNTCSFIESAREES---VNTIVELAE 69 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 + K VV+ GC+ Q E++L P VVG Y+++ ++ R G RV + Sbjct: 70 AHKK------VVITGCMVQHFQEQLLDELPEAVAVVGTGDYHKIVNVINRVEKGDRV--S 121 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + S + + I D R R T A+L I EGC+ C FC++P+ RG + SR++ Sbjct: 122 EISADPTY----IADHTVPRYRTTTEGVAYLRIAEGCNYRCAFCIIPHLRGNQRSRTIES 177 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTS 268 +V EA++L D GV E+ L+ Q + G + GE +DL+ +L ++ VR+ Y + Sbjct: 178 IVTEAKQLADQGVQELVLISQITTNY-GTDIYGEP-KLADLIRALGKVDVPWVRMHY--A 233 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ +I A + +PYL LP+Q IL++MNR QII+ I++ P+ Sbjct: 234 YPTGLTPKVIDAIAETPNFLPYLDLPLQHSHPEILRAMNRPWQGQVNDQIIENIKTAMPN 293 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I + FIVGFPGET+ F + V + + F +SP GTP + V + V Sbjct: 294 AVIRTTFIVGFPGETNSHFEHLLKFVKRHEFDHVGVFTFSPEEGTPAYTLPNTVSQAVMD 353 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKN 444 R L + + + N C+G++++VL+E+ G+ +GRS P + +V N Sbjct: 354 ARRDALMQVQQPISLKRNRQCIGEVVDVLVEQENPSTGEFIGRSPRFAPEVDGLVYVEGN 413 Query: 445 HNIGDIIKVRITDVKISTLYG 465 +G ++ V+ITD I LYG Sbjct: 414 ARLGSLVSVKITDADIYDLYG 434 >gi|302385311|ref|YP_003821133.1| MiaB-like tRNA modifying enzyme [Clostridium saccharolyticum WM1] gi|302195939|gb|ADL03510.1| MiaB-like tRNA modifying enzyme [Clostridium saccharolyticum WM1] Length = 454 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 136/411 (33%), Positives = 223/411 (54%), Gaps = 39/411 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+ + + GYE V + AD+ ++NTC + A K L R + + Sbjct: 10 GCKVNSYETEAMQQLLENAGYEIVPFAEGADVYIINTCSVTNIADRKSRQMLHRAKKMNP 69 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARFG--- 146 + VV AGC QA GEE L++ V++V+G L +LE +R G Sbjct: 70 GAV-------VVAAGCYVQAAGEE-LKKDEAVDLVIGNNKKTELVSVLEEYFASRKGPEA 121 Query: 147 -----------KRVVDTDYSVED--KFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTF 192 K +D + D ++E LSI NR T AF+ +Q+GC++FC++ Sbjct: 122 EIACGYPVLPPKAGLDAVIDIGDTREYENLSI-----NRIADHTRAFIKVQDGCNQFCSY 176 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 C++PYTRG SR +VV+E ++L +G EI G +++++ + E+ T DL+ Sbjct: 177 CIIPYTRGRVRSRKPDEVVEEVKRLTASGYQEIVFTGIHLSSYGMDFPEKERLTLLDLVK 236 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 + E++GL R+R + PR +++ L + P+ HL +QSG D LK MNR +T Sbjct: 237 RVHEVEGLKRIRLGSLEPRIVTEKFAAELARLSKICPHFHLSLQSGCDDTLKRMNRHYTT 296 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 EY D +RS + AI++D IVGFPGE ++F+ T + ++K+ + + FKYS R G Sbjct: 297 EEYFNCCDVLRSAFHNPAITTDVIVGFPGERPEEFKTTREYLEKVQFYEMHVFKYSKRNG 356 Query: 373 TPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 T + M +Q+ E+ K +R LLCL+K E +++ ++ +G EVL+E+ Sbjct: 357 TKAAVMPDQIPESTKTDRSNELLCLEK---EMSLAYRESWLGCRTEVLLEE 404 >gi|317471887|ref|ZP_07931222.1| MiaB family RNA modification enzyme [Anaerostipes sp. 3_2_56FAA] gi|316900660|gb|EFV22639.1| MiaB family RNA modification enzyme [Anaerostipes sp. 3_2_56FAA] Length = 439 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 137/434 (31%), Positives = 227/434 (52%), Gaps = 18/434 (4%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V + GC++N Y+S M DM G E V+ + AD+ ++NTC + A K L R + Sbjct: 10 VVTLGCKVNQYESDAMFDMLTDAGAEIVSPKEGADIYIVNTCSVTNIAERKSRQMLHRAK 69 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L D +V GC AQ G+E L++ P++++++G L +LE+ G R Sbjct: 70 KLNP-------DTVVAAVGCYAQV-GKEELKKDPLIDLIIGNNKKKDLIPILEKYFEGHR 121 Query: 149 --VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D S ++E L + + A++ +Q+GC++FC++C++PY RG SR Sbjct: 122 RDAEVLDLSSGSEYEALHV----RHLNEHTRAYIKVQDGCNQFCSYCIIPYARGRVRSRD 177 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + V+ E R L NG E + G +V ++ G LDG+K DLL + ++ G+ R+R Sbjct: 178 MEDVLSEIRGLARNGCREFVITGIHVCSY-GTDLDGDK-GLIDLLEEIGKVGGVDRIRLG 235 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P +++ +K ++ P+ HL +QSG D LK MNR++T E R+ + +R Sbjct: 236 SLEPGIITEDFVKRLQSIEQFCPHFHLSLQSGCDATLKRMNRKYTTDEIREKAEILRKAY 295 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 D A+++D IVGFPGET+++F AT +++IG + FKYS R GT + M +QV++ Sbjct: 296 EDPALTTDIIVGFPGETEEEFEATRKFLEEIGLYEMHVFKYSKRAGTRAAVMEDQVNDQE 355 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVLNSKN 444 KA R L E + +F + +G VLIE+ + VG + V + S+ Sbjct: 356 KARRSAVLIAMNEEHKNAFENRQIGTRRTVLIEEKLRNSSGNFYVGHTKEYVKVAVESEE 415 Query: 445 HNIGDIIKVRITDV 458 I++V +T + Sbjct: 416 PLENQIVEVELTGI 429 >gi|95931189|ref|ZP_01313911.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684] gi|95132751|gb|EAT14428.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684] Length = 453 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 144/451 (31%), Positives = 242/451 (53%), Gaps = 28/451 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M +E + + AD++++NTC A E+ + L Sbjct: 10 SLGCPKNLVDAEVMLGHLPPDRFEIITEEEAADILIINTCAFINDAQEESVDTI-----L 64 Query: 91 KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + +R KE G +++V GC+ Q +E+ P V++ +G R+ EL+++ + ++ Sbjct: 65 EAARFKEEGQCRMLIVTGCLPQRYRDELATELPEVDLFMGTGDAARIVELIDQWQGSQQQ 124 Query: 150 VD-TDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ T + + ++ L+ R + +A++ I EGC C++C++P RG+ SR Sbjct: 125 INATSANPQALYDHLT------PRAKASPFYSAYVKIAEGCSNHCSYCIIPKLRGMLRSR 178 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S+ +V E +KL+ GV E+ L+ Q++ A+ DG T +LL L +I+ L LR Sbjct: 179 SIDSIVQEVQKLVKEGVKEVNLIAQDITAFGQDRSDG--ATLEELLQELVKIEDLSWLRL 236 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P +S+ LI D + YL LP+Q +D IL MNRR A + RQ+I R+R Sbjct: 237 LYAYPDGISNELIDLIASEDKICNYLDLPLQHINDDILSMMNRRIDAQDSRQLISRLRER 296 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD+ + + FIVGFPGETD ++ ++ V++ + + F+YS GT +N+ QVDE Sbjct: 297 IPDMTLRTSFIVGFPGETDAQYQQLLEFVEEGHFDRVGVFRYSREEGTAAANLDNQVDET 356 Query: 386 VKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQS----- 437 +K RL L K + +VSF + VG+++ VLIE + +E L+ GRSP Sbjct: 357 IKKRRLDKLMKA--QSRVSFRKHRDLVGKVVPVLIEGYSEETELLLQGRSPSQAPDIDGL 414 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + S ++GDI+ ++ITD L GE+V Sbjct: 415 VYVTSGQADVGDIVDLKITDTTEYDLIGEMV 445 >gi|148380907|ref|YP_001255448.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str. ATCC 3502] gi|153931336|ref|YP_001385215.1| RNA modification protein [Clostridium botulinum A str. ATCC 19397] gi|153937595|ref|YP_001388684.1| RNA modification protein [Clostridium botulinum A str. Hall] gi|148290391|emb|CAL84518.1| putative radical SAM superfamily protein [Clostridium botulinum A str. ATCC 3502] gi|152927380|gb|ABS32880.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str. ATCC 19397] gi|152933509|gb|ABS39008.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str. Hall] Length = 432 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 137/442 (30%), Positives = 239/442 (54%), Gaps = 22/442 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++NVY++ M + F QGYE V+ + AD+ V+NTC + +K + R R Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149 ++ ++ V GC +Q EE+ + V+VV+G + + + RA K +V Sbjct: 65 -----RQNSKAIIAVVGCYSQIAPEEVSKIDG-VDVVLGTRNKGDIVYWVNRAMEEKNQV 118 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ + +K FE L+I + Y K AFL IQ+GC++FC++C++P+ RG S+ Sbjct: 119 IEVKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++++E KL +G EI L G ++ ++ G L+G K + +L + +++G+ R+R + Sbjct: 175 KIMEEVEKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEEIDKVEGIERIRIGSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ I L P+ HL +QSG + LK MNR++T +Y++I+ +R+ Sbjct: 233 DPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIES 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I++D IVGFPGET+++F T + + I ++ FK+SPR GT M QVD +K Sbjct: 293 VSITTDIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVDGKIKE 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER ++ L K L ++ F + + + + VL E+ KEKG G +P + S Sbjct: 353 ERSNKIINLDKDLEKE---FMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSSKD 409 Query: 446 NIGDIIKVRITDVKISTLYGEL 467 G+II + +V + GE+ Sbjct: 410 ITGEIINTTLKEVSKDFIKGEI 431 >gi|300853988|ref|YP_003778972.1| putative oxidoreductase [Clostridium ljungdahlii DSM 13528] gi|300434103|gb|ADK13870.1| predicted oxidoreductase [Clostridium ljungdahlii DSM 13528] Length = 463 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 144/445 (32%), Positives = 247/445 (55%), Gaps = 29/445 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M + F +GY+ V+ D AD+ V+NTC + +K + R R Sbjct: 34 GCRVNQYETEAMAEKFIQEGYDIVDFEDYADVYVVNTCTVTNMGDKKSRQMIHRAR---- 89 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARF-GKRV 149 K+ + ++ V GC +Q +++ S I V+VV+G + + + R + GK++ Sbjct: 90 ---KKNSNAVIAVVGCYSQIASDKV---SEIEGVDVVLGTRNKGDVVYWVSRVSYEGKKI 143 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V + +++K FE L I D R R AFL IQ+GC++FC++C +P+ RG S+S Sbjct: 144 VKVNEVLKNKTFEDLKI-DEYQKRTR---AFLKIQDGCNRFCSYCAIPFARGAVCSKSPD 199 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++++E KL N EI L G ++ ++ G +DG+ +L + ++KG+ R+R + Sbjct: 200 KIIEEVEKLSRNNFKEIILSGIHIASY-GTDIDGD-WNLLRILQEIDKVKGIDRVRIGSI 257 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P+ ++ +I+ L+ L P+ HL +QSG D LK MNRR+T EY +I+ IR+ + Sbjct: 258 DPQFFTEGVIEKMSKLEKLCPHFHLSLQSGCDETLKRMNRRYTTSEYEKIVYEIRNAIEN 317 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +I++D IVGFPGET+++F T D +++I ++ FKYS R GT ++M QVD K Sbjct: 318 ASITTDIIVGFPGETEEEFNKTYDFLNRIALSKMHVFKYSRRSGTKAADMPGQVDGKTKD 377 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSP-WLQSVVLNSK 443 ER +L L KKL ++ F + +G ++VL E+ G G +P +++ + K Sbjct: 378 ERSSKVLELDKKLEKK---FMNKFLGYNMDVLYEQEIDNDGTYFEGYTPNYIKVITKCEK 434 Query: 444 NHNI-GDIIKVRITDVKISTLYGEL 467 N+ G I+ ++ K + G+L Sbjct: 435 ALNLEGKILCTQLEGTKDGYIEGKL 459 >gi|119491288|ref|ZP_01623342.1| hypothetical protein L8106_21864 [Lyngbya sp. PCC 8106] gi|119453452|gb|EAW34614.1| hypothetical protein L8106_21864 [Lyngbya sp. PCC 8106] Length = 440 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 142/448 (31%), Positives = 232/448 (51%), Gaps = 27/448 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC+ N D+ M + GY+ ++ + AD +++NTC E A E+ + I Sbjct: 9 ISHLGCEKNRIDTEHMLGLLVQAGYQVDSNEELADYVIVNTCSFIEAAREES---VQTIV 65 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +L ++ K VV+ GC+AQ + +L P VVG Y+++ ++L+R + G+R Sbjct: 66 DLAEAKKK------VVITGCMAQHFQDALLEELPEAVAVVGTGDYHKIVDVLQRTQQGER 119 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V + S E + I D R R T A+L + EGC+ C FC++P+ RG + SR Sbjct: 120 V--REISAEPTY----IADETVPRYRTTTEGVAYLRVAEGCNYRCAFCIIPHLRGNQRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264 S+ +V EA++L + GV EI L+ Q + G L GE ++LL +L ++ VR+ Sbjct: 174 SIESIVTEAQQLAEQGVKEIVLISQITTNY-GVDLYGEP-KLAELLRALGKVDIPWVRMH 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y ++P ++ +++A D ++PYL LP+Q IL++MNR +II++I+ Sbjct: 232 Y--AYPTGLTPKVMEAIQDTPNVLPYLDLPLQHSHPEILRAMNRPWQGRVNDEIIEKIKL 289 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+ + + FIVGFPGET+ F + V + + F +S GTP ++ QV + Sbjct: 290 ALPNAVLRTTFIVGFPGETNQHFEHLLQFVKRHHFDHVGVFTFSAEEGTPAYDLPHQVPQ 349 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440 V R L + + + N VG+I+EVL+E+ GKL+GRS P + VV Sbjct: 350 AVMDARRDALMQVQQPISLKQNQKSVGEIVEVLVEQEQPSTGKLIGRSGRFAPDVDGVVY 409 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +G I+ V+ITD + LYG V Sbjct: 410 VEGMARLGSIVPVKITDADVYDLYGSTV 437 >gi|167751324|ref|ZP_02423451.1| hypothetical protein EUBSIR_02310 [Eubacterium siraeum DSM 15702] gi|167655570|gb|EDR99699.1| hypothetical protein EUBSIR_02310 [Eubacterium siraeum DSM 15702] Length = 443 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 132/437 (30%), Positives = 233/437 (53%), Gaps = 29/437 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ V+++GC++N Y+S + GYE+ + + AD++++N+C + E + +K + Sbjct: 14 RYTVQTFGCKVNQYESASVAKAMDEHGYEKTDDIFTADIVIINSCSVTENSDKKAKQLIN 73 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RA 143 RI++ +I VV+ GC QA E + S ++V G + + ++++ Sbjct: 74 RIKSSDPMKI-------VVLTGCFPQAFPETASKLS--ADIVTGTEHKDSIADMIDVFTG 124 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K+V V+ ++E+ D G R AF+ I++GCD+FC++C++P RG Sbjct: 125 NKVKQVAIPPRPVKKQYEKQKNADMGKTR-----AFIKIEDGCDRFCSYCIIPTARGSVR 179 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVR 262 SRSL + +E R + G E+ L+G N++ + + GL +D + ++ + G+ R Sbjct: 180 SRSLQDITEEVRFQVSCGHKEMVLVGINLSCYGQEIGL-----RLADAIEAVCSVDGVER 234 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R ++ P ++D I L P+ HL +QSGS LK MNR +T EY I+ R+ Sbjct: 235 VRLSSLEPELLTDEDIARMAAQKKLCPHFHLSLQSGSSATLKRMNRHYTPDEYYDIVLRL 294 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PD AI++D +VGF GETD++F+ + + K+G+A F YS R GT + + + Sbjct: 295 RKAFPDCAITTDIMVGFAGETDEEFKESCEFAQKVGFAAMHVFTYSIREGTAAARRTDHI 354 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 ++ +R + L KKL+E+ + +CVG+ +VLI++ E+ G +P V Sbjct: 355 AHDIAVKRYHAMSSLAKKLKEE---YFRSCVGKTEKVLIQRRESEE-YANGLTPQYVPVR 410 Query: 440 LNSKNHNIGDIIKVRIT 456 + + N DII V+IT Sbjct: 411 IYGSDANRQDIITVQIT 427 >gi|253682144|ref|ZP_04862941.1| conserved hypothetical protein [Clostridium botulinum D str. 1873] gi|253561856|gb|EES91308.1| conserved hypothetical protein [Clostridium botulinum D str. 1873] Length = 433 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 134/441 (30%), Positives = 242/441 (54%), Gaps = 17/441 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++NVY+S M + F GYE V + AD+ V+NTC + + +K + R + Sbjct: 7 TLGCRVNVYESEAMAEKFLKSGYEVVQFDEVADVYVINTCTVTNMSDKKSRQMISRAK-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-GKRV 149 ++ + ++ GC Q +++ + V+V++G + + + RA+ K + Sbjct: 65 -----RKNPESIIAAVGCYTQIAPDKV-KEIGDVDVILGTRNKGDIVYWVNRAKEEDKTI 118 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V+ + +++K FE L+I + Y K AFL IQ+GC+ FC++C++P+ RG S+ Sbjct: 119 VEVNDVLKNKKFEELNIEE--YQDK--TRAFLKIQDGCNNFCSYCLIPFARGAVCSKDPE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++DE +KL ++G EI L G ++ ++ G L+G+ +L ++ EI+G+ R+R + Sbjct: 175 IIIDEVKKLSEHGFKEIILSGIDIASY-GVDLEGD-WNLLRVLKAIDEIEGINRVRIGSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ +IK G L L P+ HL +QSG + LK MNR++T E++ I+ +R D Sbjct: 233 GPEFFNEDIIKEIGSLKKLCPHFHLSLQSGCNSTLKRMNRKYTTEEFKNIVVLLRKYVKD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I+I++D IVGFPGET ++F T + + +I ++ FKYSPR GT M QVD +K Sbjct: 293 ISITTDIIVGFPGETKEEFEETYNYLKEIKLSKMHIFKYSPRTGTRAEKMENQVDGKIKE 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSKNHNI 447 ER L K + + F + + + +++L E+ +K + G +P V+ SK+ Sbjct: 353 ERSKVLLKLNEKNEKEFMNKFIDKDMKILYEQKCSDKEEYYEGYTPNYIKVIAKSKDDIS 412 Query: 448 GDIIKVRITDVKISTLYGELV 468 G I+ ++ + + G+++ Sbjct: 413 GKILNTKLMETREEYTIGKII 433 >gi|86609485|ref|YP_478247.1| tRNA modifying protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558027|gb|ABD02984.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 494 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 134/447 (29%), Positives = 232/447 (51%), Gaps = 31/447 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N D+ M + GY + A+ +++NTC E A + S L + ++ Sbjct: 59 GCEKNRVDTEHMLGLLAQAGYRVDGDEESANYVIVNTCSFIEAARRESVSTLMEL-AVQG 117 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV--- 149 +I ++AGC+AQ EE+L+ P +VG Y+++ +++ER G+RV Sbjct: 118 KKI--------IIAGCLAQHFQEELLQEIPEAVAIVGTGDYHQIVQIIERVERGERVNAV 169 Query: 150 -VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 DY ++ R Y A+L + EGC+ C+FC++P+ RG + SRS+ Sbjct: 170 TSSLDYIADETVPR-------YRTTHAPVAYLRVAEGCNYRCSFCIIPHLRGDQRSRSIE 222 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++ EA +L + GV E+ L+ Q + G L GE +DL+ +L +I + +R + Sbjct: 223 SILREAEQLAEEGVQELILISQ-ITTHYGIDLYGEP-RLADLIRALGKIP-IPWIRMLYA 279 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ +++A + +PYL LP+Q +ILK+MNR ++I+R+R P+ Sbjct: 280 YPTGVTPAVVEAIQETPNFLPYLDLPLQHSHPQILKAMNRPWQGQVNDRVIERLRQALPN 339 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + + FIVGFPGET++ F+ +D V + + F +SP GTP ++ QV E VK Sbjct: 340 AVLRTSFIVGFPGETEEHFQHLLDFVQRHQFDHVGVFTFSPEEGTPAYHLPHQVPEAVKQ 399 Query: 389 ERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VVLNS 442 ER L + +Q ++F N VG+++ VL+E+ G+ +GRSP VV Sbjct: 400 ERRARLMQV--QQGITFRRNREQVGRVVPVLLEQENPRTGEWIGRSPRFAPEVDGVVYVQ 457 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 ++G ++ V+IT + L+G++V Sbjct: 458 GQGSLGSLVPVQITRAEPYDLFGQVVA 484 >gi|238066631|sp|Q2JK17|RIMO_SYNJB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO Length = 473 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 134/446 (30%), Positives = 232/446 (52%), Gaps = 31/446 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N D+ M + GY + A+ +++NTC E A + S L + ++ Sbjct: 38 GCEKNRVDTEHMLGLLAQAGYRVDGDEESANYVIVNTCSFIEAARRESVSTLMEL-AVQG 96 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV--- 149 +I ++AGC+AQ EE+L+ P +VG Y+++ +++ER G+RV Sbjct: 97 KKI--------IIAGCLAQHFQEELLQEIPEAVAIVGTGDYHQIVQIIERVERGERVNAV 148 Query: 150 -VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 DY ++ R Y A+L + EGC+ C+FC++P+ RG + SRS+ Sbjct: 149 TSSLDYIADETVPR-------YRTTHAPVAYLRVAEGCNYRCSFCIIPHLRGDQRSRSIE 201 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++ EA +L + GV E+ L+ Q + G L GE +DL+ +L +I + +R + Sbjct: 202 SILREAEQLAEEGVQELILISQ-ITTHYGIDLYGEP-RLADLIRALGKIP-IPWIRMLYA 258 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ +++A + +PYL LP+Q +ILK+MNR ++I+R+R P+ Sbjct: 259 YPTGVTPAVVEAIQETPNFLPYLDLPLQHSHPQILKAMNRPWQGQVNDRVIERLRQALPN 318 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + + FIVGFPGET++ F+ +D V + + F +SP GTP ++ QV E VK Sbjct: 319 AVLRTSFIVGFPGETEEHFQHLLDFVQRHQFDHVGVFTFSPEEGTPAYHLPHQVPEAVKQ 378 Query: 389 ERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VVLNS 442 ER L + +Q ++F N VG+++ VL+E+ G+ +GRSP VV Sbjct: 379 ERRARLMQV--QQGITFRRNREQVGRVVPVLLEQENPRTGEWIGRSPRFAPEVDGVVYVQ 436 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 ++G ++ V+IT + L+G++V Sbjct: 437 GQGSLGSLVPVQITRAEPYDLFGQVV 462 >gi|218132828|ref|ZP_03461632.1| hypothetical protein BACPEC_00689 [Bacteroides pectinophilus ATCC 43243] gi|217991701|gb|EEC57705.1| hypothetical protein BACPEC_00689 [Bacteroides pectinophilus ATCC 43243] Length = 460 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 135/411 (32%), Positives = 222/411 (54%), Gaps = 42/411 (10%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 GC++N Y++ ME M + GYE V +D AD+ V+NTC + A K L + + Sbjct: 9 GCKVNSYETEAMEQMLIAAGYEIVPFCEDEKADVYVINTCSVTNIADRKSRQMLHKAK-- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE----RARFG 146 K+ + +VV AGC QA G+E L +V++V+G RL E++ Sbjct: 67 -----KQNPNAIVVAAGCYVQARGDE-LAADDMVDIVIGNNRKNRLVEIINDYIGNNSNN 120 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + VVD + E +E L+I Y+ A++ +Q+GC++FC++C++PYTRG SR Sbjct: 121 EAVVDIAKTHE--YEELNI----YDVCEHTRAYIKVQDGCNQFCSYCIIPYTRGRVRSRR 174 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW--------------RGKGLDGEKCTFSDLLY 252 V E R+L++ G E L G +++++ R + G + +L+ Sbjct: 175 PEDVTAEVRRLVEKGYKEFILAGIHLSSYGIDFEAPCDEAVDYRAANMPGSR--LLELIE 232 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 ++ ++G+ RLR + PR +++ +K +L+ + P+ H+ +QSG D LK MNRR+TA Sbjct: 233 AVCSVEGVKRLRLGSFEPRILTEAFVKRMAELEPVCPHFHISLQSGCDATLKRMNRRYTA 292 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 EY + +R P+ AI++D IVGFP ETD++F T + +++I + + FKYS R G Sbjct: 293 DEYEESCKLLRKYFPNAAITTDVIVGFPQETDEEFAITKEYLERIHFYEMHVFKYSRRKG 352 Query: 373 TPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 T M QV E VK R LL L+K++ + + ++ +G I EVL E+ Sbjct: 353 TAADRMDGQVPEPVKTARSAGLLELEKRMSRE---YRESALGSIQEVLFEE 400 >gi|153939005|ref|YP_001392232.1| RNA modification protein [Clostridium botulinum F str. Langeland] gi|152934901|gb|ABS40399.1| RNA modification enzyme, MiaB family [Clostridium botulinum F str. Langeland] gi|295320230|gb|ADG00608.1| RNA modification enzyme, MiaB family [Clostridium botulinum F str. 230613] Length = 432 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 137/442 (30%), Positives = 238/442 (53%), Gaps = 22/442 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++NVY++ M + F QGYE V+ + AD+ V+NTC + +K + R R Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149 ++ ++ V GC +Q EE+ + V+VV+G + + + RA K +V Sbjct: 65 -----RQNSKAIIAVVGCYSQIAPEEVSKIDG-VDVVLGTRNKGDIVYWVNRAMEEKNQV 118 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ + +K FE L+I + Y K AFL IQ+GC++FC++C++P+ RG S+ Sbjct: 119 IEVKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++++E KL +G EI L G ++ ++ G L+G K + +L + ++G+ R+R + Sbjct: 175 KIMEEVEKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEEIDRVEGIERIRIGSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ I L P+ HL +QSG + LK MNR++T +Y++I+ +R+ Sbjct: 233 DPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIES 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I++D IVGFPGET+++F T + + I ++ FK+SPR GT M QVD +K Sbjct: 293 VSITTDIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVDGKIKE 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER ++ L K L ++ F + + + + VL E+ KEKG G +P + S Sbjct: 353 ERSNKIINLDKDLEKE---FMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSSKD 409 Query: 446 NIGDIIKVRITDVKISTLYGEL 467 G+II + +V + GE+ Sbjct: 410 ITGEIINTTLKEVSKDFIKGEI 431 >gi|323486989|ref|ZP_08092303.1| hypothetical protein HMPREF9474_04054 [Clostridium symbiosum WAL-14163] gi|323692033|ref|ZP_08106281.1| MiaB family RNA modification enzyme [Clostridium symbiosum WAL-14673] gi|323399701|gb|EGA92085.1| hypothetical protein HMPREF9474_04054 [Clostridium symbiosum WAL-14163] gi|323503956|gb|EGB19770.1| MiaB family RNA modification enzyme [Clostridium symbiosum WAL-14673] Length = 445 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 146/450 (32%), Positives = 237/450 (52%), Gaps = 28/450 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M + G+ + ++AD+I++NTC A E+ + + + Sbjct: 7 SLGCDKNLVDTEMMLGLLNKDGHTFTDDENEADIILINTCCFINDAKEESVNTILEMAEY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K S G ++V GC+AQ EEI++ P V+ ++G TY + +L +A G++ V Sbjct: 67 KKS----GKCRALIVTGCMAQRYKEEIIKEIPEVDGILGTSTYDEISNVLNKALSGEQAV 122 Query: 151 D-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 D S + IV G G AFL I EGC+K CT+C++P RG S + + Sbjct: 123 CFHDLSALPEVSEKRIVTTG-----GHYAFLKISEGCNKRCTYCIIPSLRGPYRSVPMER 177 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 ++ EA +L GV E+ L+ Q + G L G+K +LL L+EI G+ LR + Sbjct: 178 LLTEAGQLAGQGVKELILVAQETTLY-GTDLYGKK-MLPELLRRLAEIPGIEWLRVQYCY 235 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P ++++ L++ + + + YL +P+Q SDRILKSM R+ + E ++ I R+R PDI Sbjct: 236 PEEITEELVQVIKEEEKVCHYLDIPIQHASDRILKSMGRKTSREELKERIARLREEIPDI 295 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 + + I GFPGET D M+ VD++ + + F YS TP ++ +QV E V+AE Sbjct: 296 VLRTTLISGFPGETPQDHEELMEFVDEMEFDRLGVFAYSAEEDTPAASFPDQVPEEVRAE 355 Query: 390 R---LLCLQKKLREQQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440 R L+ LQ Q ++F A VG+I+EV+IE ++ VGR+ P + ++ Sbjct: 356 RRDELMELQ-----QDIAFEKAESMVGRILEVMIEGKVADENAFVGRTYMDAPGVDGLIF 410 Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGELV 468 + + + GD +VR+T L GE++ Sbjct: 411 VNADVPLMSGDFCRVRVTGAADYDLIGEMI 440 >gi|300728328|ref|ZP_07061694.1| tRNA-I(6)A37 modification enzyme MiaB [Prevotella bryantii B14] gi|299774440|gb|EFI71066.1| tRNA-I(6)A37 modification enzyme MiaB [Prevotella bryantii B14] Length = 285 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 112/291 (38%), Positives = 186/291 (63%), Gaps = 19/291 (6%) Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----C 245 C +C+VP+TRG E SR + ++ E + L D G E+TLLGQNVN++ G +G++ Sbjct: 1 CHYCIVPFTRGRERSRDVESILREVKDLHDKGFKEVTLLGQNVNSY-GLLPNGKRPENGT 59 Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 +F++LL ++E +R+R+TTS+P DM++ +++A D L ++H P QSGSD++LK Sbjct: 60 SFAELLRKVAESVPDMRVRFTTSNPEDMTEDILQAIADEPNLCHHIHFPAQSGSDKVLKL 119 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 MNR++T +Y + ID I + PD I++D VG+ ET++DF+ T+ L+ ++G+ AF F Sbjct: 120 MNRKYTREKYMKTIDAIHRIIPDCGITTDVFVGYHDETEEDFQQTLSLMKEVGFDSAFMF 179 Query: 366 KYSPRLGTPGSNMLEQVDENVKAE-------RLLCLQKKLREQQVSFNDACVGQIIEVLI 418 KYS R PG+ E + +N+ E L+ LQ ++ +Q N G++ E+LI Sbjct: 180 KYSER---PGTYAAEHLPDNISEEEKIRRLNELISLQTQISAEQ---NKKDEGKVFEILI 233 Query: 419 EKHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 E+ GK ++ +L+GR+P ++V++ NH+IG+ +KV+IT +TL+GE V Sbjct: 234 ERFGKRDRNQLMGRTPQNKAVIMAKGNHHIGEFVKVKITGSTSATLFGEEV 284 >gi|91203193|emb|CAJ72832.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 447 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 138/457 (30%), Positives = 235/457 (51%), Gaps = 44/457 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y++ + + ++G+ ++ AD+ V+NTC + + EK +++ R++ Sbjct: 13 TFGCKVNQYETQALRESLIAKGFMEISPEMAADVYVINTCTVTSASDEKSRNYIKRLK-- 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVG------PQT 132 K+ +VV GC A+++ I + S + ++VG PQ Sbjct: 71 -----KKSPKSSIVVTGCYAESDAAAIKKIDGVSHVITKADESSLAEIIVGNDDPCIPQI 125 Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCT 191 P LL+ F K D RL+I +R G T AFL I++GCD +C+ Sbjct: 126 TSLPPYLLQNNTFQK----------DSIYRLNI-----SRFHGHTRAFLKIEDGCDMYCS 170 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 +C++PY RG SR + DEA++LI NG EI L G ++ A+ + DG + +L Sbjct: 171 YCIIPYVRGAIKSRKWQDIHDEAKRLIHNGYKEIVLTGIHLGAYGKEMSDG--ISLVKIL 228 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 LSE GL R+R ++ +++ L+ + + P+LH+P+QSG D ILK MNR++T Sbjct: 229 ERLSEFSGLGRIRLSSIEVNEITPELMHLIAERKTICPHLHIPLQSGDDLILKRMNRKYT 288 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 A Y++I+D IRS AI++D +VGFPGET+ F+ T+D K GY++ F +S R Sbjct: 289 AAYYQEILDTIRSNIKLPAITTDVMVGFPGETERHFQNTVDFCTKAGYSRMHIFPFSIRK 348 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVG 430 GTP ++M +R L+ ++ + I EVL+E + + KL G Sbjct: 349 GTPAASMQNHCASPSITQRKDLLKAHADTLSYAYKKQFLNHIGEVLVEWERDAKTNKLCG 408 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 + V+ + + I+ V+I ++ S ++G+L Sbjct: 409 YTERYIKVLFDGPDTLKNSIVPVQIERIERSDVFGKL 445 >gi|172039350|ref|YP_001805851.1| CHP1125-containing protein [Cyanothece sp. ATCC 51142] gi|238065329|sp|B1WUD1|RIMO_CYAA5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|171700804|gb|ACB53785.1| CHP1125-containing protein [Cyanothece sp. ATCC 51142] Length = 437 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 141/451 (31%), Positives = 227/451 (50%), Gaps = 33/451 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V GC+ N DS M + QGY + + AD +++NTC ++A E+ L + Sbjct: 9 VSHLGCEKNRIDSEHMLGILAQQGYSIDANEELADYVIVNTCSFIQEAREESVRTLVELA 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 ++++GC+AQ E++L P +VG Y ++ E+++R G+R Sbjct: 69 EANKK---------IIISGCMAQHFQEQLLEELPEAVALVGTGDYQKIAEVIQRVETGER 119 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V T+ S F + D R R A+L + EGCD C FC++P+ RG + SR Sbjct: 120 V--TEVSQNPTF----VADEMTPRYRTTNEAVAYLRVAEGCDYRCAFCIIPHLRGNQRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264 S+ +V EA++L D GV EI L+ Q + G L GE ++LL +L ++ +R+ Sbjct: 174 SIESIVTEAQQLADQGVQEIILISQITTNY-GLDLYGEP-KLAELLRALGKVDIPWIRIH 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y ++P ++ +I A D ++PYL LP+Q ILK+MNR II+R++ Sbjct: 232 Y--AYPTGLTPKVIDAIRDTPNILPYLDLPLQHSHPAILKAMNRPWQGQVNDNIIERLKQ 289 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+ + + FIVGFPGET++ F ++ V + + F +SP TP M QV Sbjct: 290 SIPNAILRTTFIVGFPGETEEHFEHLINFVQRHEFDHVGVFTFSPEEETPAYQMPNQVPS 349 Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437 + R L+ +Q+ + ++ N CVGQ +EVLIE+ + +GRS P + Sbjct: 350 EIAQARRNYLMEIQQPIAAKK---NQKCVGQTVEVLIEQENPTTQEYIGRSIRFAPEVDG 406 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + II V+ITD + LYG+++ Sbjct: 407 VVYVEGEGQLNSIIPVKITDADVYDLYGKVI 437 >gi|205374147|ref|ZP_03226947.1| RNA modification protein [Bacillus coahuilensis m4-4] Length = 430 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 140/440 (31%), Positives = 250/440 (56%), Gaps = 27/440 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F QGYERV+ +D+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKDQGYERVDFEKQSDVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I+ D ++ V GC AQ EI+ P V++VVG Q ++ + +E+ + ++ + Sbjct: 65 ----IRSNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRVKMLDYIEQYKVERQPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NAVGNIMKNRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTT 267 +V+ +A++L+D G EI L G + G G D + + LL L +++KGL R+R ++ Sbjct: 176 EVIRQAQQLVDAGYKEIVLTGIHTG---GYGEDMKDYNLALLLRDLETQVKGLKRIRISS 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++D +++ ++++ +LH+P+QSGS+ +LK M R++T + + ++++R P Sbjct: 233 IEASQLTDEVMEVIDQSNMVVRHLHIPLQSGSNTVLKRMRRKYTMEFFGERLEKLRKALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +A++SD IVGFPGET+++F T + + G+++ F YS R GTP + M +QVDE++K Sbjct: 293 GLAVTSDVIVGFPGETEEEFLETFHFIKEQGFSELHVFPYSKRTGTPAARMDDQVDEDIK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE---KGKLVGRSPWLQSVVLN 441 E RL+ L +L ++ S + G+++EV+ E+ KE G VG + +V Sbjct: 353 NERVHRLIELSNQLAKEYASRFE---GEVLEVIPEEPFKEDPDSGLYVGYTDNYLKIVFP 409 Query: 442 SKNHNIGDIIKVRITDVKIS 461 +++ +G ++KV+I IS Sbjct: 410 ARDDMVGKLVKVKINKGWIS 429 >gi|150390422|ref|YP_001320471.1| MiaB-like tRNA modifying enzyme YliG [Alkaliphilus metalliredigens QYMF] gi|238065283|sp|A6TRJ4|RIMO_ALKMQ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|149950284|gb|ABR48812.1| MiaB-like tRNA modifying enzyme YliG [Alkaliphilus metalliredigens QYMF] Length = 446 Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 144/458 (31%), Positives = 246/458 (53%), Gaps = 33/458 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P +V+S GC N+ D+ M + GY+ N+ AD+I++NTC E A E+ Sbjct: 1 MPLSVYVESLGCSKNLIDAEVMLGILNQYGYKLTNNEVKADVIIVNTCGFIEAAKEE--- 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + +I L ++K+ L++VAGC+ + +++L P V+ +VG Y+ + +++ + Sbjct: 58 SINKIIEL--GQLKKDKLKLLIVAGCLGERYQKDLLEELPEVDAIVGTGGYHEIVKVIHQ 115 Query: 143 ARFGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G+R+V D + ++ R+ +A++ I +GCD +CT+C++P R Sbjct: 116 TMKGQRIVEIGDINRPYDETLPRIQTTASH-------SAYIKISDGCDNYCTYCIIPKLR 168 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258 G SR + ++ EA+ L +NGV EI L+ Q+ + G+D ++ S LL LSE++ Sbjct: 169 GKYRSRKMENIIQEAQTLANNGVKEIILIAQDTTRY---GIDLYDEYRLSALLDKLSEVE 225 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ +R +P ++D LI + D + Y+ +P+Q S +ILK MNRR + E + Sbjct: 226 GIQWIRILYCYPEMITDELIATIKNNDKVCKYIDIPIQHCSTKILKLMNRRTSKEEIVSL 285 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I++++ P+I I + IVGFPGE+++DF ++ I + + F YS GTP + + Sbjct: 286 IEKLKKNVPNIVIRTSIIVGFPGESEEDFNELKAFIEDIKFDRLGVFTYSQEEGTPAAQL 345 Query: 379 LEQVDENVKAERLLCLQKKLRE--QQVSFND--ACVGQIIEVLIEKHGKEKGKLVGRS-- 432 EQV +K R QK L E Q++S N +GQ IEVLIE+ EK + +GRS Sbjct: 346 AEQVPSELKESR----QKILMELQQRISLNKNRLYIGQSIEVLIEEEIAEKTEYLGRSQG 401 Query: 433 --PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466 P + +V ++ +G I+KV+I + L GE Sbjct: 402 DAPEIDGIVYVKSTVPLCVGQIVKVKIENALEYDLMGE 439 >gi|222055074|ref|YP_002537436.1| MiaB-like tRNA modifying enzyme [Geobacter sp. FRC-32] gi|221564363|gb|ACM20335.1| MiaB-like tRNA modifying enzyme [Geobacter sp. FRC-32] Length = 438 Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 140/445 (31%), Positives = 232/445 (52%), Gaps = 18/445 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q + + GC++N ++S M + +G+ V AD+ V+NTC + K + + Sbjct: 7 QTVAITTLGCKINQFESAAMAETLGKEGFSIVPFDGAADIYVINTCTVTSKTDAESRRLI 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R +N K +VV GC AQ EE L+ P VN+++G + E+L+ Sbjct: 67 RRASR-QNPSAK------IVVTGCYAQVAFEE-LQDMPGVNLILGNSEKKGIAEMLKDLG 118 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +RV+ +D S E ER + ++ R AFL +Q GCD FC++C+VPY RG S Sbjct: 119 ENQRVLVSDISRELN-ERGTRLESFAEHTR---AFLQVQNGCDAFCSYCIVPYARGRSRS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263 SL + + R + G E+ L G ++ A+ GLD + DLL + + + + R+ Sbjct: 175 VSLEEALAGIRTFAERGFKEVVLTGIHLGAY---GLDLNPPLSLLDLLNAAEKERLVERI 231 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R + P ++SD LI + P+LH+P+QSG DR+LK+MNR ++ ++R +++++ Sbjct: 232 RIGSVEPTEVSDALISFLAKSATVCPHLHIPLQSGHDRVLKAMNRNYSTADFRSVMEKLD 291 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P I I +D I GFPGETDD+F+ ++ + A F +SPR GTP + M V Sbjct: 292 TDLPSICIGTDIITGFPGETDDEFQDGYRFLESLPLAYFHVFPFSPRSGTPAATMEGHVH 351 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 +V ER L+K E++ SF + +G+ ++VL++ +E L G S V + Sbjct: 352 SSVIKERAKALRKLSEEKKKSFYRSFIGEKLQVLVQT--REGDLLKGLSRNYIPVFMEGD 409 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 + + VRIT V+ + GE++ Sbjct: 410 DDLLKTEQLVRITGVEREKVTGEVI 434 >gi|313899567|ref|ZP_07833076.1| ribosomal protein S12 methylthiotransferase RimO [Clostridium sp. HGF2] gi|312955674|gb|EFR37333.1| ribosomal protein S12 methylthiotransferase RimO [Clostridium sp. HGF2] Length = 433 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 141/433 (32%), Positives = 221/433 (51%), Gaps = 26/433 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS +M M S G+E V++ D+A+ I++NTC A E+ + ++ Sbjct: 7 SLGCSKNLVDSEKMMGMINSGGHELVHNADEAEAIIINTCGFINSAKEEAIQTIFQMAEY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K R ++ ++V GC+AQ E++ + P ++ V+ + Y L ELL + G +V Sbjct: 67 KKHRCRK-----LIVVGCLAQRYKEQLEQDIPEIDAVISIREYPHLHELLPKLLDGHDLV 121 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D K ER + TA+L I EGC CT+C +P RG +S + Q+ Sbjct: 122 SYD-----KCERKV-------SSKPWTAYLKIAEGCSNHCTYCAIPLIRGDNVSFPIEQL 169 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V+EA++L GV E+ ++ Q+ + G L G + DLL L EI+G +R +P Sbjct: 170 VEEAKQLAQRGVRELVVIAQDTTKY-GVDLYGRRALL-DLLQQLHEIEGFHWIRILYMYP 227 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++ LI+ L ++PY +P+Q S+R+L+ MNRR + E ++ +IR Sbjct: 228 DEIDARLIEGMAKLPKVLPYFDIPMQHASNRMLQLMNRRGSREEVAALVKKIRETFSYPT 287 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 + + FIVGFP E + DF M V+ I + + +F YSP TP +M VDE+VK R Sbjct: 288 LRTTFIVGFPTEEEADFSELMQFVEDIHWDRMGAFPYSPEEDTPAYSMDGAVDEDVKEAR 347 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKH----GKEKGKLVGRSP-WLQSVVLNSKNH 445 L L K+ E + VG+IIEVL+E G +G+ +P + +V+ Sbjct: 348 LAQLMKRQEEISLENQRRMVGEIIEVLVEDQEGLTGVYRGRGASSAPDEVDGIVMFKSER 407 Query: 446 NI--GDIIKVRIT 456 I G +KVRIT Sbjct: 408 FIEFGSFVKVRIT 420 >gi|51892771|ref|YP_075462.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM 14863] gi|81388877|sp|Q67NX5|RIMO_SYMTH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|51856460|dbj|BAD40618.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM 14863] Length = 485 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 238/460 (51%), Gaps = 36/460 (7%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYS 82 P + S GC N+ D+ M + + GY+ N ++AD++V+NTC + A E V + Sbjct: 18 PVKVGFISLGCAKNLVDTESMIGLLRNTGYQITNRAEEADVLVVNTCGFIDAAKQESVDA 77 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L ++ R + +VVAGC+ GEE+ R P ++ +VG Y R+ E++ Sbjct: 78 ILEAAQHKTRGRCQA-----LVVAGCMVPRYGEELAREIPEIDALVGTADYPRIGEVVAG 132 Query: 143 ARFGKRV---VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G+RV D D + FER+ + GY TA+L I EGCD C FC +P R Sbjct: 133 ILAGQRVQQISDPDSITDWNFERV-LATPGY------TAYLKIAEGCDCACAFCSIPLMR 185 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258 G SR + +VDEAR+L GV E+ ++ Q+ + GLD K + LL L+++ Sbjct: 186 GRHRSRPIESIVDEARRLAGMGVRELVVISQDTTYY---GLDLYRKPMLARLLRELAQVD 242 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ +R S+P ++D LI+ ++ YL LP+Q GS+R+L+ MNR A Y ++ Sbjct: 243 GIRWIRIHYSYPTRITDELIEVIVTEPKVLNYLDLPLQHGSNRVLRIMNRPANAEGYLRL 302 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + ++R PDI + S FI G PGET++DF +D + + F YS GT M Sbjct: 303 VQKLRERVPDICLRSTFIAGHPGETEEDFELLLDFLRACEFDHVGVFAYSQEEGTKAGQM 362 Query: 379 LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVG 430 EQ+ E V+ +R + +Q+++ ++ N VG+ +EVL+E + G+ G Sbjct: 363 -EQLPEEVRLARRDRAMEVQQEIARRR---NQLQVGRELEVLVEGRSPQGRGWFVGRCYG 418 Query: 431 RSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGE 466 +SP + VVL GD+++VRIT V+ L GE Sbjct: 419 QSPGIDGVVLFRAPAGAELKPGDMVQVRITGVQDYDLLGE 458 >gi|313888926|ref|ZP_07822586.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845099|gb|EFR32500.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei ACS-146-V-Sch2b] Length = 432 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/383 (32%), Positives = 217/383 (56%), Gaps = 20/383 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + + F + + GC++N Y+S M ++F S+GY +V + D +D+ ++NTC + + K Sbjct: 1 MEKTFSILTLGCKVNQYESEAMSELFESRGYRQVENDDFSDVYIVNTCTVTNLSDRKSRQ 60 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 F+ + + K + +V V GC +Q EE+ + V+VVVG R+ +L+E Sbjct: 61 FIRKSK-------KNNPNSVVAVVGCYSQVSPEEV-KSIEGVDVVVGTTDRNRIVDLIEE 112 Query: 143 ARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 ++ ++ D +F + D NR R A++ +Q+GC++FCT+C++P+ RG Sbjct: 113 SKKNNEKINIVKDLKNVREFANTTNFDSN-NRTR---AYMKVQDGCNRFCTYCIIPFARG 168 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR++ V EAR L D G EI L G ++ ++ G+D DL+ +++E+ G+ Sbjct: 169 PIRSRTIEDSVREARTLADRGFKEIVLTGIHIGSF---GMDLGDMRLIDLIEAIAEVDGI 225 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R ++ P ++D ++ L + HL +QSGS+ ILK+MNRR+T +Y + + Sbjct: 226 ERIRLSSVEPIIITDDFMERAVKTGKLCDHFHLSLQSGSNNILKAMNRRYTREDYIEKAN 285 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR+ P +++D IVGFPGE+ +DF +M +V ++G+++ FKYS R T + M Sbjct: 286 IIRNYMPHAGLTADIIVGFPGESQEDFEDSMKIVKEVGFSRIHVFKYSKRKNTKAAVMKN 345 Query: 381 QVDENVKAER---LLCLQKKLRE 400 Q+D NVK ER L+ L ++ +E Sbjct: 346 QIDGNVKKERSEKLIALGEEYQE 368 >gi|325478525|gb|EGC81637.1| tRNA methylthiotransferase YqeV [Anaerococcus prevotii ACS-065-V-Col13] Length = 431 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 136/444 (30%), Positives = 243/444 (54%), Gaps = 19/444 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + + GC++N Y+S +E++F ++GY++ ++AD+ V+NTC + + K + R Sbjct: 5 FNIITLGCKVNQYESEAVEEIFEARGYKK--KEENADIYVINTCTVTNMSDRKSRQMISR 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 R ++ + ++ V GC +Q + EE+ + V++V+G + + +L E Sbjct: 63 AR-------RDNPEAVIAVMGCYSQVKPEEVSQIEG-VDIVLGSRNKEEVVDLCEDVLQN 114 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 K +D S+ E +I D + + +T A++ IQ+GC+ +C++C++PY RG SR Sbjct: 115 KGAIDKVLSLS---ETKTIEDLEISNQEAMTRAYMKIQDGCNMYCSYCLIPYARGNISSR 171 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + + +EA++L +NG EI L G +V+++ GK L + D++ ++ G+ R+R Sbjct: 172 DMESIKNEAKRLAENGYKEIVLTGIHVSSY-GKDLKN-GTSLIDVIEEVANTDGIERIRL 229 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ PR ++ ++ + HL +QSGSD ILK+MNR++ +++ +D IR V Sbjct: 230 SSMEPRHITREFLERMKATKKACDHFHLSLQSGSDDILKAMNRKYDTKIFKEKVDLIREV 289 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ +++D IVGFP ETD++ T + V I +A+ FKYS R GT + M +VD N Sbjct: 290 FPNAGLTTDIIVGFPTETDENHIETKNFVKDIKFAKTHLFKYSKRDGTKAATMKPEVDGN 349 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQSVVLNSKN 444 +K ERL L++ + + F + +G+ + VL E G G S +L+ V + Sbjct: 350 IKKERLKELEEIEQVNKREFLEKQIGKTLSVLFESKSDMDGYKSGYSTNYLRVNVKDEIE 409 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 N +I IT++K L GELV Sbjct: 410 DN--EIRNCLITEIKNDELVGELV 431 >gi|282897302|ref|ZP_06305304.1| conserved hypothetical protein [Raphidiopsis brookii D9] gi|281197954|gb|EFA72848.1| conserved hypothetical protein [Raphidiopsis brookii D9] Length = 439 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 142/452 (31%), Positives = 228/452 (50%), Gaps = 33/452 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC+ N D+ + + GY + + AD +++NTC E A E+ L Sbjct: 9 ISHLGCEKNRIDTEHILGLLVEAGYSVDTNEELADYVIVNTCSFIEAAREESVRTL---V 65 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L S K +V+AGC+AQ E++L P VVG Y+++ +LER G+R Sbjct: 66 ELAESNKK------IVIAGCMAQHFQEQLLEELPEAVAVVGTGDYHKIVNVLERVERGER 119 Query: 149 V----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V VD Y ++ R G A+L + EGCD C FC++PY RG + S Sbjct: 120 VKQISVDPTYIADENTPRYRTTTEG-------VAYLRVAEGCDYGCAFCIIPYLRGNQRS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIK-GLV 261 R++ +V EA++L GV E+ L+ Q + GLD G+ ++L+ +L E+ V Sbjct: 173 RTIESIVGEAKQLAAQGVKELILISQITTNY---GLDIYGQP-KLAELISALGEVDIPWV 228 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+ Y ++P ++ +IKA + +PYL LP+Q IL++MNR II+R Sbjct: 229 RMHY--AYPTGITPDVIKAIQETANFLPYLDLPLQHSHPEILRAMNRPWQGRVNDGIIER 286 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ P+ + + FIVGFPGET + F ++ ++ + F +SP GTP N+ Q Sbjct: 287 IKTALPEAVLRTTFIVGFPGETQEHFDHLLEFTERHQFDHLGVFTFSPEEGTPAYNLPNQ 346 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437 + + + ER L + + + N VG+I++VLIE+ + G L+GRS P + Sbjct: 347 LPQELMVERRNQLMEIQQPISLHKNWQQVGRIVDVLIEQENPQTGDLIGRSDRFAPEVDG 406 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 V ++G I+ V+IT LYGE+V+ Sbjct: 407 QVYVQGKASLGTIVPVKITTADAYDLYGEVVM 438 >gi|292670089|ref|ZP_06603515.1| tRNA-I(6)A37 thiotransferase [Selenomonas noxia ATCC 43541] gi|292648277|gb|EFF66249.1| tRNA-I(6)A37 thiotransferase [Selenomonas noxia ATCC 43541] Length = 472 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 136/394 (34%), Positives = 207/394 (52%), Gaps = 21/394 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N +++ ME +F ++GYE V + A++ V+NTC + + K R L Sbjct: 44 TLGCKVNQFETETMEGLFRARGYEIVPFEEAAEVYVINTCSVTHLSDRKS-------RQL 96 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA---RFGK 147 + D + VAGC AQ EEI R V VV+G + ++ + +E A G Sbjct: 97 IRRAARTNPDACIAVAGCYAQVAPEEI-RALAGVRVVIGTKERAQIVDYVEAALQKNAGV 155 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 TD FE + + + + AFL I++GC FCTFC++PY RG SR L Sbjct: 156 IGAITDIMQARVFEDIPLRSMPHRTR----AFLKIEDGCQNFCTFCIIPYARGPVKSREL 211 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLL-YSLSEIKGLVRLRY 265 S V E L + G E+ L G ++ A+ G+D + T +D +L E K L RLR Sbjct: 212 SAVAREMHLLTEAGFHEVVLTGIHLGAY---GIDLAARPTLADACRTALGEAK-LRRLRL 267 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 + ++S L++ +LHLP+Q+GSD +L++MNR + + Q+I +R Sbjct: 268 GSLESVELSADLLELIRTEPRFAAHLHLPLQAGSDAVLRAMNRHYDTAAFAQLIADVRRA 327 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P +A+S+D IVGFPGET++DF A MD V +G+A+ F YSPR GTP + +QV Sbjct: 328 VPGVAVSTDIIVGFPGETEEDFAAGMDFVRAMGFARMHVFPYSPRRGTPAAQRADQVPPA 387 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 V+ ER +Q E ++ A +G + EVL E Sbjct: 388 VRKERAARMQALAEELAQDYHRAALGSVTEVLFE 421 >gi|159030017|emb|CAO90398.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 437 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 143/451 (31%), Positives = 230/451 (50%), Gaps = 33/451 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC+ N DS M + GY N + AD +++NTC + A E+ L + Sbjct: 9 ISHLGCEKNRIDSEHMLGLLAKAGYPVDNDEELADYVIVNTCSFIQAAREESVRTLVELA 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 ++++GC+AQ +E+L P +VG Y ++ E++ER G+R Sbjct: 69 EANKK---------IIISGCMAQHFQDELLTELPEAVAIVGTGDYQKIVEIVERVETGER 119 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V + S + F I D R R T A+L + EGCD C FC++P RG + SR Sbjct: 120 V--KEVSTDPTF----IADENLPRYRTTTEGVAYLRVAEGCDYRCAFCIIPQLRGDQRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264 S+ +V EAR+L GV E+ L+ Q + G L GE ++LL +L+E+ +R+ Sbjct: 174 SIESIVAEARQLASQGVQELILISQITTNY-GLDLYGEP-KLAELLRALAEVDIPWIRVH 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y ++P ++ +I+A + ++PYL LP+Q IL+ MNR II+RI+ Sbjct: 232 Y--AYPTGLTPKVIEAIRESPNVLPYLDLPLQHSHPDILRGMNRPWQGRVNDGIIERIKQ 289 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQ 381 P+ + + FIVGFPGET++ F ++ V + + F +S GT N + Q Sbjct: 290 AIPNAVLRTTFIVGFPGETEEHFSHLLEFVKRHEFDHVGVFTFSAEEGTAAFGLPNPVPQ 349 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437 + + ERL+ Q+ + E++ N A +GQ ++VLIE+ E G+L+GR SP + Sbjct: 350 AIMDERRERLMLTQQPISERK---NQAYIGQTVDVLIEQENPETGELIGRSARFSPEVDG 406 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V + +G I++VRIT LYGE+V Sbjct: 407 LVYVTGEAILGAIVQVRITAADTYDLYGEIV 437 >gi|284052700|ref|ZP_06382910.1| MiaB-like tRNA modifying enzyme YliG [Arthrospira platensis str. Paraca] gi|291570232|dbj|BAI92504.1| tRNA modifying enzyme MiaB-like protein [Arthrospira platensis NIES-39] Length = 439 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 136/444 (30%), Positives = 223/444 (50%), Gaps = 27/444 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N D+ M + GY+ ++ + AD +V+NTC E A E+ + I L Sbjct: 13 GCEKNRIDTEHMIGLLAEAGYQVDSNEEAADYVVVNTCSFIESAREES---VNTIVELAE 69 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 + K VV+ GC+ Q E++L P VVG Y+++ ++ R G RV + Sbjct: 70 AHKK------VVITGCMVQHFQEQLLDELPEAVAVVGTGDYHKIVNVINRVEKGDRV--S 121 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + S + + I D R R T A+L I EGC+ C FC++P+ RG + SR++ Sbjct: 122 EISADPTY----IADHTVPRYRTTTEGVAYLRIAEGCNYRCAFCIIPHLRGNQRSRTIES 177 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTS 268 +V EA++L D GV E+ L+ Q + G + GE +DL+ +L ++ +R+ Y + Sbjct: 178 IVTEAKQLADQGVQELVLISQITTNY-GTDIYGEP-KLADLIRALGKVDVPWIRMHY--A 233 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ +I A + +PYL LP+Q IL++MNR II+ I++ P+ Sbjct: 234 YPTGLTPKVIDAITETPNFLPYLDLPLQHSHPEILRAMNRPWQGQVNDHIIENIKTAMPN 293 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I + FIVGFPGET+ F + V + + F +SP GTP + V + V Sbjct: 294 AVIRTTFIVGFPGETNSHFEHLLKFVKRHEFDHVGVFTFSPEEGTPAYTLDNTVSQAVMD 353 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKN 444 R L + + + N C+G++++VL+E+ G+ +GRS P + +V N Sbjct: 354 ARRDALMQVQQPISLKGNRQCIGEVVDVLVEQENPSTGEFIGRSARFAPEVDGLVYVEGN 413 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 +G ++ V+ITD I LYG V Sbjct: 414 ARLGSLVSVKITDADIYDLYGHTV 437 >gi|317128304|ref|YP_004094586.1| RNA modification enzyme, MiaB family [Bacillus cellulosilyticus DSM 2522] gi|315473252|gb|ADU29855.1| RNA modification enzyme, MiaB family [Bacillus cellulosilyticus DSM 2522] Length = 448 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/430 (30%), Positives = 243/430 (56%), Gaps = 20/430 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F +GYE+ + +D+ V+NTC + +K + R Sbjct: 10 TLGCKVNHYETEAIWQLFQQEGYEKTDFNHSSDVYVINTCTVTNTGDKKSRQVIRRA--- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ + +V V GC AQ EI+ P V++VVG Q ++L +E+ + + + Sbjct: 67 ----IRKNPEAVVCVTGCYAQTSPAEIMA-IPGVDIVVGTQDRHKLIPYIEQYQKEREPI 121 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 122 NGVGNIMKARVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRKPE 177 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V+ +A +L+ +G EI L G + G G D + + ++LL L ++ GL R+R ++ Sbjct: 178 EVIKQAEQLVASGYKEIVLTGIHTG---GYGEDMKDYSLANLLLDLEKVDGLKRIRISSI 234 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I+ + ++ +LH+P+QSGS+ +LK M R++T + + +++++ P Sbjct: 235 EASQITDEVIQVIDQSEKVVNHLHVPLQSGSNSVLKRMRRKYTTAFFYERVEKLKKALPG 294 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+++F T + + K+G+++ F YS R GTP + M +QVD++VK Sbjct: 295 LAVTSDVIVGFPGETEEEFNETFEFIKKVGFSELHVFPYSKRTGTPAARMDDQVDDDVKN 354 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER L+ L +L ++ S + V ++I ++K + G VG + V + + Sbjct: 355 ERVHKLIALSTQLAKEYASSYEGEVLEMIPEELDKENPDAGLYVGYTDNYLKVRVKADES 414 Query: 446 NIGDIIKVRI 455 +G+I+KV+I Sbjct: 415 IVGEIVKVKI 424 >gi|288555683|ref|YP_003427618.1| RNA modification enzyme, MiaB family [Bacillus pseudofirmus OF4] gi|288546843|gb|ADC50726.1| RNA modification enzyme, MiaB family [Bacillus pseudofirmus OF4] Length = 449 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 139/443 (31%), Positives = 240/443 (54%), Gaps = 20/443 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + +F +GYE+V +D+ V+NTC + +K + R Sbjct: 8 TLGCKVNHYETEAIWQLFKQEGYEKVEYEQTSDVYVINTCTVTNTGDKKSRQVIRRA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ D ++ V GC AQ EI+ P V++VVG Q ++ +E+ + + + Sbjct: 65 ----IRKNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDRTKMIGYIEQFKKEREPI 119 Query: 151 DTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++ +E L V +R R A L IQEGC+ FCTFC++P+ RG+ SR Sbjct: 120 NGVGNIMKSRVYEELD-VPAFTDRTR---ASLKIQEGCNNFCTFCIIPWARGLMRSRDPK 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V+ +A +L++ G EI L G + G G D + + + LL L ++ GL R+R ++ Sbjct: 176 DVIKQATQLVEAGYKEIVLTGIHTG---GYGEDLKDYSLARLLEDLEQVDGLKRIRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++D +I+ + ++ +LH+P+QSGS+ +LK M R++T + + +DR++ V P Sbjct: 233 EASQLTDEVIEVIDRSEKVVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLDRLKEVLPG 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A++SD IVGFPGET+++F+ T D + K +++ F YS R GTP + M +Q+DE VK Sbjct: 293 LAVTSDVIVGFPGETEEEFQETFDFIAKHKFSELHVFPYSKRTGTPAARMDDQIDEEVKN 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER+ L + + + G+++EV+ E K E G +G + V + + + Sbjct: 353 ERVHRLIELSNQLAKEYASQFEGEVLEVIPEERDKENPESGLYIGYTDNYLKVKVKATDE 412 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 IG I+KV+I GE V Sbjct: 413 MIGKIVKVKIAKAGYPYNKGEFV 435 >gi|167757698|ref|ZP_02429825.1| hypothetical protein CLOSCI_00028 [Clostridium scindens ATCC 35704] gi|167664580|gb|EDS08710.1| hypothetical protein CLOSCI_00028 [Clostridium scindens ATCC 35704] Length = 427 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/436 (30%), Positives = 233/436 (53%), Gaps = 23/436 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + + GC++N Y++ M+++ GYE V + AD+ ++NTC + A K L Sbjct: 2 KKVALHNLGCKVNAYETEAMQELLEQHGYEIVPFKEGADVYIINTCTVTNMADRKSRQML 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---E 141 R R + + VV GC QA+ +EI +++VVG + E+L E Sbjct: 62 HRARKMNPGAV-------VVACGCYVQAKRDEI---DDCIDIVVGNNRKKDIIEILSEHE 111 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + G + D + +++E L + + + A++ +Q+GC++FC++C++PY RG Sbjct: 112 AMQEGVQKELVDINNINEYEELRLSQTAEHTR----AYIKVQDGCNQFCSYCIIPYARGR 167 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 SRS V+ E +L NG E+ L G +++++ G+D S L+ S+ EI+G+ Sbjct: 168 VRSRSHDSVIREVEELARNGYKEVVLTGIHLSSY---GVDTGDDLLS-LILSIHEIEGIR 223 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R + PR +++ K L + P+ HL +QSG D LK MNR +T+ EY + Sbjct: 224 RIRLGSLEPRIITEEFAKTIAGLPKMCPHFHLSLQSGCDATLKRMNRHYTSEEYYEKCVL 283 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R + A+++D IVGFPGET+++F + +DK+ + + FKYS R GT + M EQ Sbjct: 284 LRKYFDNPALTTDVIVGFPGETEEEFAQSKAFIDKVDFYETHVFKYSKRAGTRAAQMEEQ 343 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL--VGRSPWLQSVV 439 V E+VKA R L + R +Q S+ +A VG EVL+E+ +G++ VG + + Sbjct: 344 VPESVKAVRSNELLELTRRKQASYEEALVGTTQEVLMEEEMICQGEIYQVGHTKEYVKIG 403 Query: 440 LNSKNHNIGDIIKVRI 455 ++ + +I V I Sbjct: 404 QKTEENLTNQLINVEI 419 >gi|170756026|ref|YP_001782588.1| RNA modification protein [Clostridium botulinum B1 str. Okra] gi|169121238|gb|ACA45074.1| RNA modification enzyme, MiaB family [Clostridium botulinum B1 str. Okra] Length = 432 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/442 (30%), Positives = 238/442 (53%), Gaps = 22/442 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++NVY++ M + F QGY+ V+ + AD+ V+NTC + +K + R R Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYQIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149 ++ ++ V GC +Q EE+ + V+VV+G + + + RA K +V Sbjct: 65 -----RQNSKAIIAVVGCYSQIAPEEVSKIDG-VDVVLGTRNKGDIVYWVNRAMEEKNQV 118 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ + +K FE L+I + Y K AFL IQ+GC++FC++C++P+ RG S+ Sbjct: 119 IEVKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++++E KL +G EI L G ++ ++ G L+G K + +L + ++G+ R+R + Sbjct: 175 KIMEEVEKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEEIDRVEGIERIRIGSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ I L P+ HL +QSG + LK MNR++T +Y++I+ +R+ Sbjct: 233 DPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIES 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I++D IVGFPGET+++F T + + I ++ FK+SPR GT M QVD +K Sbjct: 293 VSITTDIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEGMKNQVDGKIKE 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER ++ L K L ++ F + + + + VL E+ KEKG G +P + S Sbjct: 353 ERSNKIINLDKDLEKE---FMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSSKD 409 Query: 446 NIGDIIKVRITDVKISTLYGEL 467 G+II + +V + GE+ Sbjct: 410 ITGEIINTTLKEVSKDFIKGEI 431 >gi|113477201|ref|YP_723262.1| MiaB-like tRNA modifying protein YliG [Trichodesmium erythraeum IMS101] gi|123056314|sp|Q10Y85|RIMO_TRIEI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|110168249|gb|ABG52789.1| MiaB-like tRNA modifying enzyme YliG [Trichodesmium erythraeum IMS101] Length = 441 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 142/447 (31%), Positives = 229/447 (51%), Gaps = 33/447 (7%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N D+ + + GYE + + AD +V+NTC + A E+ L + N Sbjct: 13 GCEKNRIDTEHIIGLLVQAGYEVDANEELADYVVVNTCSFIQAAREESVKTLVELAE-AN 71 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 +I V+AGC+AQ EE+L P +VG Y+++ ++++R G RV Sbjct: 72 KKI--------VIAGCMAQHFPEELLAELPEAIALVGTGDYHKIVDVMQRVEKGDRVK-- 121 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 E E I D R R + A++ I EGCD C FC++P+ RG SR++ Sbjct: 122 ----EVTAEPTYIADETTPRYRTTSEGVAYVRIAEGCDYRCAFCIIPHLRGKARSRTIES 177 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTS 268 +V EA+KL D GV EI L+ Q + G + G+ +DLL +L ++ +R+ Y + Sbjct: 178 IVVEAQKLADQGVKEIILISQITTNY-GIDIYGQP-KLADLLEALGKVDIPWIRMHY--A 233 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ +I A D ++PYL LP+Q IL++MNR II RI++ P+ Sbjct: 234 YPTGLTPKVITAIQDTPNILPYLDLPLQHSHPEILRAMNRPWQGQVNDDIIKRIKTAMPN 293 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV-- 386 + + FIVGFPGET++ ++ V + + F +SP GTP N+ Q+ + V Sbjct: 294 AVLRTSFIVGFPGETEEHHSHLVEFVKRHEFDHVGVFTFSPEEGTPAYNLPNQLPQEVMD 353 Query: 387 -KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VVLN 441 + + ++ +Q+ + QQ N VGQ+++VLIE+ + G+L+GRSP ++ Sbjct: 354 ARRQEIMEVQQSISWQQ---NQKLVGQLVDVLIEQENPQTGELIGRSPRFSPEVDGLIYV 410 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 +G I+ V ITD I LYG L+ Sbjct: 411 KGEARLGCIVPVMITDADIYDLYGCLI 437 >gi|99034378|ref|ZP_01314398.1| hypothetical protein Wendoof_01000800 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 198 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 101/193 (52%), Positives = 140/193 (72%), Gaps = 2/193 (1%) Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334 + L AH + LMP++HLPVQSGS++IL +MNR+HTA EY +IIDR R ++P+I SSD Sbjct: 2 ESLYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEIIDRFRKLKPEIEFSSD 61 Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394 FIVGFPGET+ DF TM LV+K+ YAQA+SFKYSPR GTPG+ +QV E VK ERLL L Sbjct: 62 FIVGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAERKDQVPEEVKTERLLRL 121 Query: 395 QKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD-IIK 452 QK + +QQ+ FN + VG+ I VL +K GK + +++G+SP++QSV ++ D I+ Sbjct: 122 QKLISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCIDDSEDKYRDKIVN 181 Query: 453 VRITDVKISTLYG 465 V++ + + S+L G Sbjct: 182 VKVLEARQSSLLG 194 >gi|322807272|emb|CBZ04846.1| miab family protein, possibly involved in tRNA or rRNAmodification [Clostridium botulinum H04402 065] Length = 432 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/442 (30%), Positives = 239/442 (54%), Gaps = 22/442 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++NVY++ M + F QGYE V+ + AD+ V+NTC + +K + R R Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149 ++ ++ V GC +Q EE+ + V+VV+G + + + RA K +V Sbjct: 65 -----RQNSKAIIAVVGCYSQIAPEEVSKIDG-VDVVLGTRNKGDIVYWVNRAMEEKNQV 118 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ + +K FE L+I + Y K AFL IQ+GC++FC++C++P+ RG S+ Sbjct: 119 IEVKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++++E +KL +G EI L G ++ ++ G L+G K + +L + +++G+ R+R + Sbjct: 175 KIMEEVKKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEEIDKVEGIERIRIGSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ I L P+ HL +QSG + LK MNR++T +Y++I+ +R+ Sbjct: 233 DPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIES 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I++D IVGFP ET+++F T + + I ++ FK+SPR GT M QVD +K Sbjct: 293 VSITTDIIVGFPRETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVDGKIKE 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER ++ L K L ++ F + + + + VL E+ KEKG G +P + S Sbjct: 353 ERSNKIINLDKDLEKE---FMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSSKD 409 Query: 446 NIGDIIKVRITDVKISTLYGEL 467 G+II + +V + GE+ Sbjct: 410 ITGEIINTTLKEVSKDFIKGEI 431 >gi|169333944|ref|ZP_02861137.1| hypothetical protein ANASTE_00330 [Anaerofustis stercorihominis DSM 17244] gi|169259509|gb|EDS73475.1| hypothetical protein ANASTE_00330 [Anaerofustis stercorihominis DSM 17244] Length = 408 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/429 (30%), Positives = 229/429 (53%), Gaps = 25/429 (5%) Query: 44 MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103 M ++F + GYE V+ + AD+ V+NTC + ++ K + R++ K+ + + Sbjct: 1 MIELFKTNGYEIVDPAEKADVYVINTCAVTNESERKSKQIVRRLK-------KQNENAVT 53 Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVED---KF 160 V+ GC A++ EE ++ ++V G ++ + + + + V Y++E+ +F Sbjct: 54 VLTGCFAESNFEE-AKKVDSADIVCGTHKREKIIDYINEFKAKQNKV---YNLEEDSREF 109 Query: 161 ERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219 ++ I G +R AF+ +Q+GC+ FCT+C++PY RGI + S+ +V+ + L Sbjct: 110 DKAGITTYDGKSR-----AFIKVQDGCNMFCTYCIIPYARGILKNASVEKVLSQIDALSK 164 Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279 G E+ + G +V +++ GE DLL + + + R+R + P+ ++D +K Sbjct: 165 KGYREVVITGIHVASYKADT--GE--NLIDLLELIDKENKIDRIRLGSLEPKLLTDTFLK 220 Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339 +L P+ H+ +QSG D+ LK MNR++T EY +I+ R+R+ + I++D IVGF Sbjct: 221 RLSELKSFCPHFHISLQSGCDKTLKEMNRKYTTKEYMEIVKRVRTYFDNPGITTDIIVGF 280 Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399 P ETD+DF T D DK+G++ F YSP+ GTP S M Q+ + VK +R L+ + Sbjct: 281 PNETDEDFEVTKDFTDKVGFSYVHIFPYSPKHGTPASEMENQIPKEVKTKRAKELKDVME 340 Query: 400 EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459 ++ F + +G+ +VLIEK E G S V + S I+ V+ITD Sbjct: 341 NKREDFLNNMIGKKEKVLIEKKL-EDNIYEGYSENYIYVEVKSDKDIFNQIVNVKITDKT 399 Query: 460 ISTLYGELV 468 + L GE++ Sbjct: 400 QTHLRGEII 408 >gi|166365636|ref|YP_001657909.1| hypothetical protein MAE_28950 [Microcystis aeruginosa NIES-843] gi|238066406|sp|B0JJS5|RIMO_MICAN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|166088009|dbj|BAG02717.1| hypothetical protein MAE_28950 [Microcystis aeruginosa NIES-843] Length = 437 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 141/451 (31%), Positives = 231/451 (51%), Gaps = 33/451 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC+ N DS M + GY N + AD +++NTC + A E+ L + Sbjct: 9 ISHLGCEKNRIDSEHMLGLLAKAGYPVDNDEELADYVIVNTCSFIQAAREESVRTLVELA 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 ++++GC+AQ +E+L P +VG Y ++ E++ER G+R Sbjct: 69 EANKK---------IIISGCMAQHFQDELLTELPEAVAIVGTGDYQKIVEIVERVETGER 119 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V + S + F I D R R + A+L + EGCD C FC++P RG + SR Sbjct: 120 V--KEVSADPTF----IADENLPRYRTTSEGVAYLRVAEGCDYRCAFCIIPQLRGDQRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264 S+ +V EAR+L GV E+ L+ Q + G L GE ++LL +L E+ +R+ Sbjct: 174 SIESIVAEARQLASQGVQELILISQITTNY-GLDLYGEP-KLAELLRALGEVDIPWIRVH 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y ++P ++ +I+A + ++PYL LP+Q IL+ MNR II+RI+ Sbjct: 232 Y--AYPTGLTPKVIEAIRETPNVLPYLDLPLQHSHPDILRGMNRPWQGRVNDGIIERIKQ 289 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+ + + FIVGFPGET++ F ++ V + + F +S GT ++ + V + Sbjct: 290 AIPNAVLRTTFIVGFPGETEEHFSHLLEFVKRHEFDHVGVFTFSAEEGTAAFDLPDPVPQ 349 Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437 + + ERL+ Q+ + E++ N A +GQ ++VLIE+ E G+L+GR SP + Sbjct: 350 AIMDERRERLMLTQQPISERK---NQAYIGQTVDVLIEQENPETGELIGRSARFSPEVDG 406 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V + +G I++VRIT LYGE+V Sbjct: 407 LVYVTGEAILGAIVQVRITAADTYDLYGEIV 437 >gi|226324718|ref|ZP_03800236.1| hypothetical protein COPCOM_02504 [Coprococcus comes ATCC 27758] gi|225207166|gb|EEG89520.1| hypothetical protein COPCOM_02504 [Coprococcus comes ATCC 27758] Length = 446 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 147/458 (32%), Positives = 234/458 (51%), Gaps = 38/458 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + G++ V+ AD+I++NTC A E+ + + +L Sbjct: 7 SLGCDKNLVDSEVMLGILAKDGHQMVDDETMADVIIINTCCFIHDAKEESIQNILEMADL 66 Query: 91 KNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---------L 140 K + R+K ++V GC+AQ EEI++ P V+ V+G +Y + + + Sbjct: 67 KKTGRLK-----ALIVTGCLAQRYKEEIIQEIPEVDAVLGTTSYEEIAHVIDGVLSDSPM 121 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 ER + D DY R+ G + A+L I EGCDK CT+C++P RG Sbjct: 122 ERGDVRLTMKDVDYLPVTDTHRMVTTGGHF-------AYLKIAEGCDKHCTYCIIPKVRG 174 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S + +++EA+ L D GV E+ L+ Q + G L GEK LL +L +I GL Sbjct: 175 DFRSVPMEHLLEEAQNLADGGVKELILVAQETTMY-GTDLYGEK-RLPQLLRALCKISGL 232 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R +P +++D LI+ + + YL LP+Q SD ILK M RR + + + I+ Sbjct: 233 RWIRILYCYPEEITDELIQVIKEEPKICHYLDLPIQHASDGILKRMGRRTSRAQLIETIE 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R PDIA+ + I GFPGET + MD VD++ + + F YSP TP ++M + Sbjct: 293 KLRREIPDIALRTTLITGFPGETQEQHEELMDFVDQMEFDRLGVFTYSPEEDTPAASMPD 352 Query: 381 QVDENVKAERLLCLQKKLRE--QQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRS---- 432 Q+ E VK ER Q +L E Q + F+ A +G+ + V+IE ++ VGR+ Sbjct: 353 QIPEEVKEER----QAELMELQQDIVFDQAEDRIGEELLVMIEGKVADENAYVGRTYRDA 408 Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 P + ++ + + + GD KV++T L GEL+ Sbjct: 409 PNVDGLIFVNTSEELMSGDFAKVKVTGSADYDLIGELL 446 >gi|291563947|emb|CBL42763.1| MiaB-like tRNA modifying enzyme [butyrate-producing bacterium SS3/4] Length = 441 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/391 (34%), Positives = 210/391 (53%), Gaps = 17/391 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ ME + + GYE V+ + AD+ V+NTC + A +K L R + KN Sbjct: 10 GCKVNAYETEAMEQLLEAAGYEIVSFEEKADVYVINTCSVTNVADKKSRQMLHRAK-AKN 68 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD- 151 D +VV AGC QA ++ LR V++++G L LL+ GK + + Sbjct: 69 P------DAVVVAAGCYVQAAADK-LREDAAVDLIIGNNRKADLVPLLDAWFAGKEIRES 121 Query: 152 -TDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 TD + +++E+L I N++ T AF+ +Q+GC++FC++C++PYTRG SR Sbjct: 122 ITDLAGSNEYEKLHI-----NKQAEHTRAFIKVQDGCNQFCSYCIIPYTRGRVRSRRPED 176 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 V +E + L + G EI L G ++ ++ G E F L+ L EI G+ R+R+ + Sbjct: 177 VEEEVKILAEEGYKEIVLTGIHLTSY-GIDFKDEGIDFLTLIRRLHEIDGIERIRFGSLE 235 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 PR +++ L + P+ HL +QSG D LK MNR +T EY + +R + Sbjct: 236 PRVITEEFASELSRLPKICPHFHLSLQSGCDDTLKRMNRHYTCEEYADRCEILRKHFKNP 295 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 AI++D IVGFP ETD DF T ++K+ + + F YS R GT M +QV E VK E Sbjct: 296 AITTDVIVGFPAETDADFETTRKFLEKVHFYEMHVFPYSRRAGTRADRMPDQVPEPVKKE 355 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 R L K ++ + + VG E+L+E+ Sbjct: 356 RSAILLKLEKKMSGEYRSSFVGTEQEILLEE 386 >gi|330838436|ref|YP_004413016.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC 35185] gi|329746200|gb|AEB99556.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC 35185] Length = 432 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 146/443 (32%), Positives = 232/443 (52%), Gaps = 20/443 (4%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + + GC++N +++ ME +F +GY V + AD+ V+NTC + +K + R R Sbjct: 6 LTTLGCKVNQFETETMEGLFRQRGYAIVPFDEAADVYVINTCSVTSLGEKKSRQLIRRAR 65 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L N R ++ V GC AQ EEI R V VV+G + + + +ERA Sbjct: 66 RL-NERA------VIAVTGCYAQVAPEEI-RSIEGVRVVLGTKERAAIVDHVERAAREAG 117 Query: 149 VVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V D D +FE + + G R R AFL I+EGC+ FC+FC++PY RG SR Sbjct: 118 VFDGTGDIMHASEFEDIPLF-GAPARTR---AFLKIEEGCENFCSFCIIPYARGPVRSRL 173 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L V EA KL+ G EI L G ++ + G D T +D + ++ + GL RLR Sbjct: 174 LKSVRREAAKLLAMGFKEIVLTGIHLGCY---GRDLGDVTLADAVRAVLSLPGLKRLRLG 230 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + ++SD L+ + +LHLP+Q+GSD +L++MNR + ++ +I+R+ Sbjct: 231 SLESIELSDDLLALLAQEERFAGHLHLPLQAGSDEVLRAMNRHYDTAKFAALIERVERAV 290 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P +AIS+D IVGFPGET + F ++ V+++ +A+ F YSPR GTP + QV E Sbjct: 291 PGVAISTDIIVGFPGETQELFEESLAFVERMNFARMHVFPYSPRRGTPAAAFAAQVPEAE 350 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 K ER+ +Q ++ +F+ A +G + VL E + +G G + V ++ Sbjct: 351 KKERVHRMQALAAKKSEAFHAAFLGTEMPVLFET--EREGVTDGLTANYIRVYTDAPVRT 408 Query: 447 IGDIIKVRITDVKISTLYGELVV 469 GDI +R+ + ++GEL+ Sbjct: 409 -GDIHAMRLVHLYRDGVWGELLA 430 >gi|125973459|ref|YP_001037369.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum ATCC 27405] gi|256005355|ref|ZP_05430320.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum DSM 2360] gi|281417660|ref|ZP_06248680.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum JW20] gi|238065327|sp|A3DDZ7|RIMO_CLOTH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|125713684|gb|ABN52176.1| SSU ribosomal protein S12P methylthiotransferase [Clostridium thermocellum ATCC 27405] gi|255990674|gb|EEU00791.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum DSM 2360] gi|281409062|gb|EFB39320.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum JW20] gi|316940304|gb|ADU74338.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum DSM 1313] Length = 453 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 139/460 (30%), Positives = 243/460 (52%), Gaps = 42/460 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + +E + ++A++I++NTC E A E+ + + + N Sbjct: 9 SLGCPKNLVDSEIMLGLLKKNDFEITSDSEEANVIIVNTCGFIESAKEESINTILEMANY 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-------- 142 KN + +++VAGC+AQ +EI++ P V+ VVG Y + +++E Sbjct: 69 KNKNCE-----MLIVAGCLAQRYKDEIIKEMPEVDAVVGVSGYDEIAKVIEEFYSKKNDK 123 Query: 143 -----ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 A F K + +Y ERL + GY A+L I EGCD CT+C +PY Sbjct: 124 NDKEKAVFHKDTLSVEYL---NNERLLSTNSGY-------AYLKISEGCDNRCTYCAIPY 173 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG SR + ++ EA L GV E+ L+ Q+V + GK L G+K +L+ +S I Sbjct: 174 IRGPYRSRKMEDIISEAEFLAGKGVKEVILVAQDVTVY-GKDLYGQK-KLVELVREVSGI 231 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +G+ +R ++P ++ + LIK + + ++ YL +P+Q SD+ILK M RR T+ R Sbjct: 232 EGIEWIRLLYTYPEEIDEELIKEIANNEKVVKYLDIPIQHASDKILKLMGRRSTSEGIRN 291 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 I+DR+R+ PDI + + IVGFPGE + DF+ D V K + + F YS GTP + Sbjct: 292 ILDRLRAEVPDIVLRTSLIVGFPGEDEKDFKILYDFVRKYEFDRLGVFTYSREEGTPAYD 351 Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLVG 430 + Q+ ++VK R ++ LQK++ +++ N++ + ++ + L+E ++ G+ Sbjct: 352 LKPQIKKSVKESRRNDIMQLQKEIVQRK---NESRLEKVYKTLVEGVSEDGIFYYGRTYA 408 Query: 431 RSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 +P + V +++ G+ + V++ ++ L GE++ Sbjct: 409 EAPDIDGSVYFTSAEPLKFGEFVNVKVLNIDDYDLIGEVI 448 >gi|226950381|ref|YP_002805472.1| RNA modification enzyme, MiaB family [Clostridium botulinum A2 str. Kyoto] gi|226843573|gb|ACO86239.1| RNA modification enzyme, MiaB family [Clostridium botulinum A2 str. Kyoto] Length = 432 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/442 (30%), Positives = 239/442 (54%), Gaps = 22/442 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++NVY++ M + F +QGYE V+ + AD+ V+NTC + +K + R R Sbjct: 7 TLGCRVNVYETEAMTEKFINQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK-RV 149 ++ ++ V GC +Q EE+ + V+VV+G + + + RA K +V Sbjct: 65 -----RQNSKAIIAVVGCYSQIAPEEVSKIDG-VDVVLGTRNKGDIVYWVNRAMEEKNQV 118 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ + +K FE L+I + Y K AFL IQ+GC++FC++C++P+ RG S+ Sbjct: 119 IEVKDVLRNKEFEELNIEE--YRDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++++E KL +G EI L G ++ ++ G L+G K + +L + +++G+ R+R + Sbjct: 175 KIMEEVEKLSKHGFKEIILSGIDIASY-GFDLEG-KYNLTSILEEIDKVEGIERIRIGSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ I L P+ HL +QSG + LK MNR++T +Y++I+ +R+ Sbjct: 233 DPTFFTEEEIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIES 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I++D IVGFP ET+++F T + + I ++ FK+SPR GT M QVD +K Sbjct: 293 VSITTDIIVGFPEETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVDGKIKE 352 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER ++ L K L ++ F + + + + VL E+ KEKG G +P + S Sbjct: 353 ERSNKIINLDKDLEKE---FMNKFIEKEMPVLYEQETKEKGIFEGYTPNYIKIYSKSSKD 409 Query: 446 NIGDIIKVRITDVKISTLYGEL 467 G+II + +V + GE+ Sbjct: 410 ITGEIINTTLKEVSKDFIKGEI 431 >gi|317968047|ref|ZP_07969437.1| 2-methylthioadenine synthetase [Synechococcus sp. CB0205] Length = 477 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 144/453 (31%), Positives = 231/453 (50%), Gaps = 40/453 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N D+ M + GY DA+++V+NTC + A E+ +R L Sbjct: 31 GCEKNRIDTEHMLGLLAEAGYGVSADEADANVVVVNTCSFIQDAREE------SVRTL-- 82 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 + E G L++ AGC+AQ EE+L P +VG Y + +LER G+RV Sbjct: 83 VELAEQGKELII-AGCLAQHFQEELLESLPEAKAIVGTGDYQHIVSVLERVEAGERV--N 139 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 S F + D R R + A+L + EGCD C FC++P+ RG + SR++ Sbjct: 140 QVSANPTF----VGDENLPRYRTTSEAVAYLKVAEGCDYRCAFCIIPHLRGDQRSRTIES 195 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRLRYTT 267 +V EAR+L GV E+ L+ Q + GLD K ++LL +L E++ +R+ Y Sbjct: 196 IVAEARQLAAQGVQELVLISQITTNY---GLDLAGKPQLAELLRALGEVEIPWIRVHY-- 250 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++ ++ A+ D+ ++PYL LP+Q +L++MNR A ++ RIR P Sbjct: 251 AYPTGLTPEVLAAYRDVPNVLPYLDLPLQHSHPDVLRAMNRPWQADVTNGVLARIREQLP 310 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D + + FIVG+PGET++ F+ +D V + + F +SP GTP + + QV + Sbjct: 311 DAVLRTTFIVGYPGETEEQFQHLLDFVAEQRFDHVGVFTFSPEEGTPAAELPNQVPAEIA 370 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440 AE RL+ LQ+ + ++ N A VG+I++VLIE+ G+++GR +P + V Sbjct: 371 AERKDRLMALQQPIAAER---NAAWVGRIVDVLIEQENPSSGEMIGRCARFAPEVDGEVR 427 Query: 441 NSKNHN-----IGDIIKVRITDVKISTLYGELV 468 G ++ VRIT L GE+V Sbjct: 428 VMPGEGGLCAAPGTMVPVRITAADTYDLIGEVV 460 >gi|325677621|ref|ZP_08157273.1| tRNA methylthiotransferase YqeV [Ruminococcus albus 8] gi|324110589|gb|EGC04753.1| tRNA methylthiotransferase YqeV [Ruminococcus albus 8] Length = 434 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 134/451 (29%), Positives = 238/451 (52%), Gaps = 26/451 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + + ++GC++N Y++ + + F G+E V AD+ V+NTC + E+A K L Sbjct: 2 KIYYYTFGCKVNQYETEHIRERFTENGHETVRDFSVADVCVINTCTVTEQADSKCMQMLR 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQA---EGEEILRRSPIVNVVVGPQTYYRLPELLE- 141 R+R K ++V+AGC QA E + +++VG + +PEL++ Sbjct: 62 RVR-------KAAPQSVIVLAGCFPQAFQSRAESLAE----CDIIVGTEGKGSIPELVDC 110 Query: 142 RARFGKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + G+R+V ++ + F+R++ G ++ R A++ IQ+GCD +CT+C++P+ RG Sbjct: 111 FMKSGERIVAVKPHARGEAFDRMT-NKGDSDKTR---AYIKIQDGCDCYCTYCIIPFARG 166 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S+ + ++ EAR + G E+ L G N+ + G+GL E+ T +D++ + I+G Sbjct: 167 HLRSKPIGDILTEARDAVSTGHKELILTGINL-CFYGRGL-SEQLTLTDVVERICAIEGD 224 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P M + I+ LD L P+ HL +QSGS LK MNRR+T EY ++ Sbjct: 225 FRVRLGSIEPEMMLEDDIRRLAALDKLCPHFHLSLQSGSASTLKLMNRRYTPAEYEKLCH 284 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R PD AI++D +VGF E + +F ++ ++I +A+A F YS R GT Sbjct: 285 DLREYFPDCAITTDIMVGFSHEGEAEFAESLAFAERIAFAEAHIFPYSRRKGTKADTFDG 344 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 QVD + K R + + ++ + + +CVG+ +VL E+ E+ G +P +V + Sbjct: 345 QVDGHTKHLRAAKMAEVCKKTKAEYLASCVGKTFKVLFERES-EQDWHNGHAPNYVTVKV 403 Query: 441 NSKNHNIG---DIIKVRITDVKISTLYGELV 468 + ++ +V+IT +GEL+ Sbjct: 404 PRPSPDVSLRRQFRQVKITSANEEHCFGELI 434 >gi|318042484|ref|ZP_07974440.1| hypothetical protein SCB01_12282 [Synechococcus sp. CB0101] Length = 473 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 141/474 (29%), Positives = 238/474 (50%), Gaps = 42/474 (8%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 ++S + Q GC+ N D+ M + GY DA+++V+NTC Sbjct: 7 LISHPMSQTSTKPTVAFAHLGCEKNRVDTEHMLGLLAQAGYGVSADESDANVVVVNTCSF 66 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 + A E+ +R L + E G L++ AGC+AQ +E+L P +VG Sbjct: 67 IQDAREE------SVRTLVE--LAEQGKELII-AGCLAQHFQDELLESLPEAKAIVGTGD 117 Query: 133 YYRLPELLERARFGKRV----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188 Y + +LER G+RV + + ++ R Y A+L + EGCD Sbjct: 118 YQHIVSVLERVEAGERVKQVSANPTFVADEHLPR-------YRTTSEAVAYLKVAEGCDY 170 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTF 247 C FC++P+ RG + SR++ +V EA++L GV E+ L+ Q + GLD K Sbjct: 171 RCAFCIIPHLRGDQRSRTIESIVAEAQQLAAQGVKELVLISQITTNY---GLDLAGKPQL 227 Query: 248 SDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 ++LL +L E++ +R+ Y ++P +++ +++A+ ++ ++PYL LP+Q +L++M Sbjct: 228 AELLRALGEVEIPWIRVHY--AYPTGLTEAVLEAYREVPNVLPYLDLPLQHSHPEVLRAM 285 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 NR A ++ RIR PD + + FIVG+PGET++ F+ +D V + + F Sbjct: 286 NRPWQADVTGGVLRRIREQLPDAVLRTTFIVGYPGETEEHFQHLLDFVAEQRFDHVGVFT 345 Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 +SP GTP + + +QV V AE RL+ LQ+ + ++ N A VG+I++VLIE+ Sbjct: 346 FSPEEGTPAAELPDQVPAEVAAERKDRLMALQQPIAAER---NAAWVGRIVDVLIEQENP 402 Query: 424 EKGKLVGR----SPWLQSVVLNSKNHN-----IGDIIKVRITDVKISTLYGELV 468 G+++GR +P + V G ++ VRIT L GE+V Sbjct: 403 GTGEMIGRCARFAPEVDGEVRVMPGEGGLCAAPGTMVPVRITAADTYDLIGEVV 456 >gi|303290697|ref|XP_003064635.1| predicted protein [Micromonas pusilla CCMP1545] gi|226453661|gb|EEH50969.1| predicted protein [Micromonas pusilla CCMP1545] Length = 530 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 152/483 (31%), Positives = 239/483 (49%), Gaps = 44/483 (9%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 F+++YGCQMNV DS + + S Y V+ +D AD +++NTC IR+ A K++ R+ Sbjct: 28 FIETYGCQMNVSDSEIVASVLQSNRYVVVDDVDAADAVLVNTCAIRDGAEAKIWH---RL 84 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--- 144 R LK +V V GC+ + ++L + ++V GP Y LP L++ AR Sbjct: 85 RQLKREWKDAKNAPVVGVLGCMGERLKHKLLETDGLADLVAGPDAYRDLPRLIDVARGAW 144 Query: 145 FGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G V+ +V+ + E + V G +AF++I GC+ C FC+VP+TRG E Sbjct: 145 SGGGSVEAAINVQLRRDETYADVKPVRANDAGPSAFVSIMRGCNNMCAFCIVPFTRGRER 204 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----------------RGKGLDG----- 242 SR + +VDE ++L+D G E+ LLGQNVN++ R +G Sbjct: 205 SRPRASIVDEVKRLVDEGRKEVVLLGQNVNSYADASGAFYLTLVPIRPRSRGFKSVYKPG 264 Query: 243 ----EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 F++LL ++ + +R+R+T+ HP+D D ++ + LH+P QSG Sbjct: 265 ARRENALLFAELLDEVAGVDPEMRVRFTSPHPKDFPDDVLNVIASRPNVCKQLHMPAQSG 324 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI---VGFPGETDDDFRATMDLVD 355 S +L+ M R +T Y ++ R R P +A+SSDFI GF GET+D+ T+ L++ Sbjct: 325 STTVLERMRRGYTREAYVDLVRRARERVPGVAVSSDFIRRVFGFCGETEDEHADTVSLMN 384 Query: 356 KIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414 + Y QAF F YS R T S ++++ V E K RL + R N +G Sbjct: 385 LMRYEQAFMFAYSMREKTAASRHLVDDVPEETKKRRLAEVIAAQRRGAEERNADEIGVTH 444 Query: 415 EVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDI-------IKVRITDVKISTLYGE 466 VLIE K + GR+ + V++ + D+ + VR+ STL+G Sbjct: 445 LVLIEGTSKRSDAEYTGRTCTGKRVIVTAARTREADVDVTPGEYVAVRVEKANASTLFGS 504 Query: 467 LVV 469 V Sbjct: 505 PVA 507 >gi|306821073|ref|ZP_07454691.1| MiaB family tRNA modification enzyme [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550909|gb|EFM38882.1| MiaB family tRNA modification enzyme [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 452 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 138/458 (30%), Positives = 236/458 (51%), Gaps = 38/458 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ +E++F GY + D +D+ ++NTC + + K + R + Sbjct: 12 GCKVNQYETNAVEEIFTQNGYTLTDFDDKSDIYIINTCTVTSMSDRKSRQVIRRAK---- 67 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD- 151 K D +VVV GC AQ + + I++ VN+VVG + ++ + +++ +VV Sbjct: 68 ---KNNKDAVVVVMGCYAQNDPDAIIKIED-VNLVVGTKDKNKIFDEVQKITNHDKVVRV 123 Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211 T+ E +FE LS+ N + AF+ IQ+GCD++C++C++PYTRG SR++ +V Sbjct: 124 TNIMDELEFENLSVTSYTKNTR----AFVKIQDGCDRYCSYCIIPYTRGRIRSRNIGDIV 179 Query: 212 DEARKLIDNGVCEITLLGQNVNAW-----------------RGKGLDGEKCTFSDLLYSL 254 E + L DNG E+ L G ++ ++ + E + D++ + Sbjct: 180 KEVQSLSDNGYKEVVLTGIHIASYGKDLKKSKDKLIPIIHSQKDDFIQEDISLIDVIEEV 239 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 S+IK + R+R + P +SD ++ ++ P+ HL +QSG D L+ MNRR+T E Sbjct: 240 SKIKDIHRVRIGSVEPIIISDDFLQRLTKIEKFCPHFHLSLQSGCDDTLRRMNRRYTTDE 299 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 Y+ + +IR AI++D I GFPGET ++F T + I + F +S R GT Sbjct: 300 YKNAVLKIRQYFDSPAITTDIITGFPGETQEEFEKTYSYLRDINLYEMHIFPFSRRSGTK 359 Query: 375 GSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 +M Q+D + K ER L+ L K + + F +G+I +VL E+ KE+ G Sbjct: 360 AYDMKNQIDNDTKHERSEKLIALANKNKNE---FEQNLIGKIFDVLFEQ--KEEQYYHGY 414 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + + + S+N G +I VRI + L GEL++ Sbjct: 415 TKNYVKIHVKSENDLSGKLIDVRIIGFEDGRLIGELII 452 >gi|156339127|ref|XP_001620089.1| hypothetical protein NEMVEDRAFT_v1g149213 [Nematostella vectensis] gi|156204445|gb|EDO27989.1| predicted protein [Nematostella vectensis] Length = 323 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 178/304 (58%), Gaps = 20/304 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F++SYGCQMN+ DS + + QG+ ++DADL+++NTC IREKA + + L Sbjct: 27 KKLFIESYGCQMNMNDSEIVASILAQQGFNTTQHLEDADLVLVNTCSIREKAEQTIRKRL 86 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +K K+ + V V GC+A+ E+ L IV++VVGP Y LP LL+ Sbjct: 87 QKYNAVK----KKNTKMKVGVLGCMAERLKEKFLEEEKIVDLVVGPDAYRDLPNLLQEID 142 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V+ S ++ + ++ V N GV+AF++I GCD CTFCVVP+TRG E S Sbjct: 143 EGRDAVNVILSKDETYGDVAPVRLNNN---GVSAFVSITRGCDNMCTFCVVPFTRGRERS 199 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGL--DGEKCT---------FSDLL 251 R +++E + + D EITLLGQNV++ W G GL D +K T F+ LL Sbjct: 200 RDPQSILEEIQSMADQNFKEITLLGQNVDSYLWYGGGLKKDFKKATEIAQATAVDFAQLL 259 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 + +R R++TS+P+DMS +I + Y+HLPVQSGS+++LK+MNR+HT Sbjct: 260 DMAATRFPKMRFRFSTSNPQDMSLDVIHTMAKHKNICKYIHLPVQSGSNKMLKAMNRQHT 319 Query: 312 AYEY 315 EY Sbjct: 320 REEY 323 >gi|170077243|ref|YP_001733881.1| tRNA modifying enzyme MiaB-like protein [Synechococcus sp. PCC 7002] gi|238066620|sp|B1XPZ7|RIMO_SYNP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|169884912|gb|ACA98625.1| tRNA modifying enzyme MiaB-like protein [Synechococcus sp. PCC 7002] Length = 439 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 138/450 (30%), Positives = 231/450 (51%), Gaps = 31/450 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRI 87 + GC+ N DS M + + GYE + + AD +++NTC E A AE V + + Sbjct: 9 ISHLGCEKNRIDSEHMIGLLVNAGYEVDANEELADYVIVNTCSFIEDARAESVRTLV--- 65 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L + K +V++GC+AQ E++L P +VG Y+++ ++++R G+ Sbjct: 66 -ELAEANKK------IVISGCMAQHFQEQLLEELPEAVALVGTGDYHKIVDVIQRTEQGE 118 Query: 148 RVVDTD----YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 V + Y ++ R Y A+L + EGCD C FC++P+ RG + Sbjct: 119 IVKEVSQEITYIADETVPR-------YRTTNEAVAYLRVAEGCDYRCAFCIIPHLRGDQR 171 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVR 262 SR + +V EA++L + GV EI L+ Q + GK + G K ++LL +L + +R Sbjct: 172 SRPIESIVAEAKQLAEQGVQEIILISQITTNY-GKDIYG-KPKLAELLRALGGVDVPWIR 229 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 + Y ++P ++ +I A D ++PYL LP+Q IL++MNR +II+ + Sbjct: 230 IHY--AYPTGLTPEVIAAMRDTPNVIPYLDLPLQHSHPDILRAMNRPWQGRVNDRIIEDL 287 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + PD + + FIVGFPGET++ F+ +D V + + F +S GTP ++ Q+ Sbjct: 288 KKALPDAILRTTFIVGFPGETEEHFQHLVDFVKRHEFDHVGVFTFSAEEGTPAIDLPNQL 347 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----V 438 ++VK R L + + N+ CVGQ ++VLIE+ G+L+GRSP + Sbjct: 348 PQSVKDSRRDALMEIQQPIAARRNELCVGQTVDVLIEQENPATGELIGRSPRFAPDVDGL 407 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + ++G I+ V+IT I LYG +V Sbjct: 408 VYVTGEASLGSIVPVQITAADIYDLYGTIV 437 >gi|313905328|ref|ZP_07838694.1| MiaB-like tRNA modifying enzyme [Eubacterium cellulosolvens 6] gi|313469798|gb|EFR65134.1| MiaB-like tRNA modifying enzyme [Eubacterium cellulosolvens 6] Length = 437 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 137/431 (31%), Positives = 232/431 (53%), Gaps = 18/431 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y+ M+ M GYE V AD+ V+NTC + A K L + +++ Sbjct: 13 GCKVNSYELEAMQQMLEKAGYEIVPFEPGADVYVINTCTVTNIADRKSRQMLHKAKSM-- 70 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFG-KRVV 150 D +VV GC AQ +GEE L++ +++V+G L E L + +R G K++ Sbjct: 71 -----NPDAVVVAVGCYAQVKGEE-LKKDEAIDLVLGSNCKNDLIEALADYSRTGEKQIQ 124 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 T++ + +E L I D R AF+ +Q+GC++FCT+C++PY RG SR ++ V Sbjct: 125 RTEWDTDKSYEELYI-DRTEEHTR---AFIKVQDGCNQFCTYCIIPYARGRVRSRKIADV 180 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 +E ++L +GV E+ + G +V ++ GK L GE L+ +++E++G+ R+R + P Sbjct: 181 YEEVKRLAASGVKEVVVTGIHVCSY-GKDL-GEGEDLLALIRAVNEVEGIERIRLGSLEP 238 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 +S+ IKA ++ + P+ HL +QSG DR LK MNR ++ ++ ++ D IR A Sbjct: 239 GSISEDFIKALSEMPKVCPHFHLSLQSGCDRTLKRMNRHYSTADFTEVADWIRKYYEHPA 298 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 + +D I GFPGE++ DF D V+ + + + F YS R GT ++ +Q E VK R Sbjct: 299 LCTDVITGFPGESEADFAECRDFVEAVHFFETHVFPYSRRKGTKAADYPDQNTEAVKKAR 358 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVLNSKNHNIG 448 L+ RE++V F + + I+VL E+ + +GK G Q V++ Sbjct: 359 GKVLRDIDRERRVEFLRYYLRKPIQVLFEEEIEFEGKKYWSGHGREYQKVLVADSRDLTN 418 Query: 449 DIIKVRITDVK 459 +++ V D++ Sbjct: 419 EMLTVTPADIR 429 >gi|289523492|ref|ZP_06440346.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503184|gb|EFD24348.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 463 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 148/464 (31%), Positives = 247/464 (53%), Gaps = 52/464 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R +K+ GC+ N+Y++ + D F +G V S D D+ +L +C + + A +K FL Sbjct: 11 RVKIKTLGCRTNIYEAEAIADSFRREGA--VISEDLFDVGILVSCAVTKTAEKKCRQFL- 67 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL------ 139 R LK +E D L+V+ GC QA EE L S ++ VG + LP + Sbjct: 68 --RQLK----RESPDALIVLCGCYVQALTEEELA-SLGADLYVGNRLKSDLPGIVAKMLN 120 Query: 140 --LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 +ER F K+ D DK++ L + ++ + +F+ +Q+GC++FC++C+VP+ Sbjct: 121 DPIERPLFLKK----DVLSNDKWDALELSRVTFHTR----SFVKVQDGCNRFCSYCIVPF 172 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF--SDLLYSLS 255 RG SRS+ +V +E ++L+D+G E+ L G ++ GL G C F DL+ +LS Sbjct: 173 LRGRPTSRSVKEVAEEVKRLVDHGCKEVVLTGIHL------GLYGYGCDFDLGDLINALS 226 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 I+GL RLR+ + P +SD LI + D+ +LH+P+QSG DRIL M R + A ++ Sbjct: 227 RIEGLRRLRFGSIEPHALSDRLIDVLAESDIFCRHLHVPLQSGDDRILSLMQRGYRAEDF 286 Query: 316 RQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 II +I R + D+ IS+D IVGFPGE +D F+ T++LVD +G + F +SPR GT Sbjct: 287 INIIRKIRRKLGDDVHISTDIIVGFPGEDEDAFQNTLNLVDALGIGRVHVFPFSPRSGTK 346 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--- 431 +M +++ R++ ++ R + + + +++L+E + EK K + R Sbjct: 347 AYDMPGRLEGQTIKSRVVRATERGRLSLQRYAQRWLNRKVDILVEHNDGEKVKGLSRHFL 406 Query: 432 ----------SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 SP +++ +N +G +V + + K LYG Sbjct: 407 EVESSLDQTPSPSVEAF----QNGGVGFECEVCVLEAKHGILYG 446 >gi|225389074|ref|ZP_03758798.1| hypothetical protein CLOSTASPAR_02820 [Clostridium asparagiforme DSM 15981] gi|225044863|gb|EEG55109.1| hypothetical protein CLOSTASPAR_02820 [Clostridium asparagiforme DSM 15981] Length = 451 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 150/457 (32%), Positives = 240/457 (52%), Gaps = 31/457 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F S GC N+ D+ +M + +GY + +AD I++NTC A E+ + + Sbjct: 5 KLFCVSLGCDKNLVDTEKMLGLLNREGYAFTDDEGEADAILINTCCFIGDAKEESVNTI- 63 Query: 86 RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 L+ +R+KE G +VVAGC+AQ EEIL P V+ ++G + + +L Sbjct: 64 ----LEMARLKEEGRCRALVVAGCLAQRYKEEILEEIPEVDGILGTTSCDEIVNVL-NGI 118 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G+ D E + GG NR G A L I EGCDK CT+C++PY RG Sbjct: 119 LGREKPAPVSCFHDLAEPPT---GGENRVVTTGGYYAHLKIAEGCDKRCTYCIIPYLRGS 175 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S + Q+V EA +L + GV E+ L+ Q + GK L GEK LL+ L+++ G+ Sbjct: 176 FRSVPMEQLVREAGQLAEQGVKELILVAQETTLY-GKDLYGEK-ALPKLLHELAKVPGIQ 233 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R +P +++D LI+A + + YL +P+Q SD IL+ M RR + R++I R Sbjct: 234 WIRLQYCYPEEITDELIEAIRTEEKVCHYLDIPIQHASDGILRRMGRRTNQAQLREMIAR 293 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R PDIA+ + I GFPGET +D M VD++ + + F YS TP + +Q Sbjct: 294 LRREIPDIALRTTLISGFPGETQEDHEELMAFVDEMEFERLGVFAYSAEEDTPAYSFPDQ 353 Query: 382 VDENVKAER---LLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRS---- 432 V + VK +R ++ LQ Q+++F ++A VG+++ VLIE ++ VGR+ Sbjct: 354 VPQEVKEDRRDEIMQLQ-----QEIAFEKSEAMVGRVLTVLIEGKVVDEPAYVGRTYMDA 408 Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467 P + ++ + + + GD ++VR+T L GE+ Sbjct: 409 PSVDGLIFVNADVELMSGDFVRVRVTGSAEYDLIGEI 445 >gi|282899323|ref|ZP_06307292.1| conserved hypothetical protein [Cylindrospermopsis raciborskii CS-505] gi|281195780|gb|EFA70708.1| conserved hypothetical protein [Cylindrospermopsis raciborskii CS-505] Length = 439 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 143/452 (31%), Positives = 226/452 (50%), Gaps = 33/452 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC+ N D+ + M GY + D AD +++NTC E A E+ L + Sbjct: 9 ISHLGCEKNRIDTEHILGMLVEAGYGVDTNEDLADYVIVNTCSFIEAAREESVRTLVELA 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 N +I V+AGC+AQ E++L P VVG Y+ + +LER G+R Sbjct: 69 E-ANKKI--------VIAGCMAQHFQEQLLEELPEAVAVVGTGDYHNIVNVLERVEKGER 119 Query: 149 V----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V VD Y ++ R G A+L + EGCD C FC++PY RG + S Sbjct: 120 VKQVSVDPIYIADENTPRYRTTTEG-------VAYLRVAEGCDYGCAFCIIPYLRGKQRS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIK-GLV 261 RS+ +V EA++L GV E+ L+ Q + GLD G+ ++L+ +L E+ V Sbjct: 173 RSIESIVGEAKQLAAQGVKELILISQITTNY---GLDIYGQP-KLAELIRALGEVDIPWV 228 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+ Y ++P ++ +IKA + +PYL LP+Q IL++MNR II+R Sbjct: 229 RMHY--AYPTGITPDVIKAIQETANFLPYLDLPLQHSHPEILRAMNRPWQGRVNDGIIER 286 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I++ P + + FIVGFPGET + F ++ ++ + F +SP GTP ++ Q Sbjct: 287 IKTALPKAVLRTTFIVGFPGETQEHFDHLLEFTERHQFDHLGVFTFSPEEGTPAYDLPNQ 346 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437 + + + ER L + + + N VG+I++VLIE+ + G L+GRS P + Sbjct: 347 LPQELMVERRNQLMEIQQPISLRKNWQQVGKIVDVLIEQENPQTGDLIGRSDRFAPEVDG 406 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 V ++G I+ V+IT LYGE+V+ Sbjct: 407 QVYVQGKASLGTIVPVKITTADAYDLYGEVVM 438 >gi|218437475|ref|YP_002375804.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 7424] gi|238065330|sp|B7KDB6|RIMO_CYAP7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|218170203|gb|ACK68936.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 7424] Length = 438 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 137/451 (30%), Positives = 232/451 (51%), Gaps = 33/451 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC+ N DS M + GY + + AD +++NTC + A E+ L + Sbjct: 9 ISHLGCEKNRIDSEHMLGLLAQAGYPVDANEELADYVIVNTCSFIQSAREESVRTLVELA 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 V+++GC+AQ +E+L P +VG Y ++ ++++R G+R Sbjct: 69 EANKK---------VIISGCMAQHFQDELLSELPEAVAIVGTGDYQKIVQVIQRVENGQR 119 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V + S E + I D R R + A+L + EGCD C+FC++P+ RG + SR Sbjct: 120 V--KEISSEPTY----IADETVPRYRTTSEGVAYLRVAEGCDYRCSFCIIPHLRGNQRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264 ++ +V EA++L D GV E+ L+ Q + G L GE + LL +L E+ +R+ Sbjct: 174 TIESIVREAQQLADQGVQELILISQITTNY-GLDLYGEP-KLAQLLQALGEVDIPWIRIH 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y ++P ++ +I+A + ++PYL LP+Q ILK MNR II+RI+ Sbjct: 232 Y--AYPTGLTPKVIEAIRETPNVLPYLDLPLQHSHPDILKRMNRPWQGRVNDSIIERIKD 289 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P + + FIVGFPGET++ + ++ V + + F +SP TP +M Q+ + Sbjct: 290 AIPKAVLRTTFIVGFPGETEEHYAHLVEFVKRHEFDHVGVFTFSPEEETPAYHMANQIPQ 349 Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437 + +R ++ +Q+ + Q+ N AC+G I++VLIE+ + G+ +GRS P + Sbjct: 350 EIMEQRRDTIMQIQQPISLQK---NCACIGDIVDVLIEQENPDTGQFIGRSARFAPEVDG 406 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V ++G II V+I D I LYGE++ Sbjct: 407 LVYVEGEASLGTIIPVKIKDADIYDLYGEVI 437 >gi|255655337|ref|ZP_05400746.1| radical SAM-superfamily protein [Clostridium difficile QCD-23m63] gi|296451323|ref|ZP_06893063.1| MiaB family RNA modification enzyme [Clostridium difficile NAP08] gi|296880325|ref|ZP_06904288.1| MiaB family RNA modification enzyme [Clostridium difficile NAP07] gi|296259929|gb|EFH06784.1| MiaB family RNA modification enzyme [Clostridium difficile NAP08] gi|296428566|gb|EFH14450.1| MiaB family RNA modification enzyme [Clostridium difficile NAP07] Length = 444 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 139/454 (30%), Positives = 239/454 (52%), Gaps = 27/454 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++S GC N+ D+ M + ++GY+ + ++AD+I++NTC E A ++ + Sbjct: 3 KIALESLGCSKNLVDAEIMMGILNNKGYKLIGDFEEADVIIVNTCGFIESAKQESIDTII 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 LK K G L++V GC+AQ EE+ P ++ +VG +Y + ++L Sbjct: 63 NFAELK----KTGNLKLLIVTGCLAQRYSEELKTEIPEIDAIVGTGSYQNIDKILRELSE 118 Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 ++V D ++ + R Y A+L I EGC CT+C++P RG Sbjct: 119 MHQIVSLNDIEFVFNEDLPR-------YLSTPSYMAYLKIGEGCSNNCTYCIIPKLRGKY 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR ++ EA+KL ++GV E+ ++ Q+ + G L G K S+LL L++I G Sbjct: 172 RSRKFEDIIKEAKKLAESGVKELVVIAQDTTKY-GFDLYG-KERLSELLEELAKIDGFKW 229 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R S+P +++ LI+ D + Y +P+Q S+ ILK MNR+ T + I+ I Sbjct: 230 IRVMYSYPESITEELIQVIKKYDNICSYFDMPIQHASNNILKLMNRKTTKEDILNKINLI 289 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RS PD + + IVGFPGET+DDF+ +D V+++ + + +F YS TP + + Sbjct: 290 RSNIPDAILRTTIIVGFPGETEDDFKQLVDFVEEVKFDRLGAFAYSREEDTPADRLPNHI 349 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQ 436 DE+VK +R L+ +Q+K+ E+ ND +G+ EVLIE+ ++ G+ G + + Sbjct: 350 DEDVKIQRRDTLMMIQQKISEE---LNDKKIGKTYEVLIEEQIEDNVYTGRTQGDAEEID 406 Query: 437 SVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 S+V + N IG+ + V+I D L G+++ Sbjct: 407 SIVYVKSVDNLEIGEFVSVKINDAMEYDLMGDVL 440 >gi|160880587|ref|YP_001559555.1| MiaB-like tRNA modifying enzyme YliG [Clostridium phytofermentans ISDg] gi|238065326|sp|A9KLS2|RIMO_CLOPH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|160429253|gb|ABX42816.1| MiaB-like tRNA modifying enzyme YliG [Clostridium phytofermentans ISDg] Length = 440 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 146/453 (32%), Positives = 237/453 (52%), Gaps = 30/453 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F S GC N+ DS M + +G+E N +AD+IV+NTC A E+ + + Sbjct: 2 KIFFISLGCDKNLVDSEVMLGLIRDRGFELTNDESEADIIVVNTCCFIHDAKEESINTIL 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + K S +G ++V GC+AQ E+IL P V+ ++G +Y + E++++ Sbjct: 62 EMAEYKKSGSLKG----LIVTGCLAQRYKEDILAEIPEVDALLGTTSYDAITEVIDKVLG 117 Query: 146 GKRV---VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+R D DY E K R++ G Y +FL I EGCDK CT+C++P RG Sbjct: 118 GERTESFKDVDYLSEVKTNRVNTTGGYY-------SFLKIAEGCDKHCTYCIIPKIRGDY 170 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + ++V+EA+ L + GV E+ L+ Q + G L G+K +LL L I G+ Sbjct: 171 RSVPMERLVEEAKFLSEGGVKELILIAQETTVY-GVDLYGKK-MLPELLRKLCAIDGIEW 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R +P +++D LI + YL +P+Q SD ILK M RR E +I ++ Sbjct: 229 IRIQYCYPEEINDELIDVLKSETKICHYLDIPIQHASDDILKRMGRRTNNEELVTLITKL 288 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PDIA+ + I GFPGET++D + V K+ + + F YS TP + M +Q+ Sbjct: 289 RKEIPDIALRTSLITGFPGETEEDHEILKEFVRKMRFERLGVFTYSKEEDTPAAKMKDQI 348 Query: 383 DENVKAERLLCLQKKLRE--QQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PW 434 + VK R QK+L E Q ++F ++ VG+ ++V+IE E G +GR+ P Sbjct: 349 TKKVKVAR----QKELMEIQQGIAFERAESMVGRKLKVMIEGKLVEDGIFIGRTYMDAPN 404 Query: 435 LQS-VVLNSKNHNI-GDIIKVRITDVKISTLYG 465 + + +++K+ + G+ ++V +T+ K L G Sbjct: 405 IDGYIFVHTKDELMSGEFVEVTVTEAKEYDLIG 437 >gi|86606951|ref|YP_475714.1| MiaB tRNA modifying enzyme-like protein [Synechococcus sp. JA-3-3Ab] gi|86555493|gb|ABD00451.1| MiaB tRNA modifying enzyme-like protein [Synechococcus sp. JA-3-3Ab] Length = 439 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 134/446 (30%), Positives = 229/446 (51%), Gaps = 31/446 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N D+ M + GY D AD +++NTC E A + S L + ++ Sbjct: 4 GCEKNRVDTEHMLGLLAQAGYRVEGDEDSADYVIVNTCSFIEAARRESVSTLMEL-AVQG 62 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV--- 149 +I ++AGC+AQ EE+LR P +VG Y+++ ++++RA G+RV Sbjct: 63 KKI--------IIAGCLAQHFQEELLREIPEAVAIVGTGDYHQIVQVIQRAERGERVNAV 114 Query: 150 -VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 DY ++ R Y A+L + EGCD C+FC++P+ RG + SR + Sbjct: 115 TSSLDYIADETVPR-------YRTTHAPVAYLRVAEGCDYRCSFCIIPHLRGKQRSRPIE 167 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++ EA +L GV E+ L+ Q + G L GE ++L+ +L +I + +R + Sbjct: 168 SILREAEQLAAEGVQELILISQITTNY-GLDLYGEP-RLAELIRALGQIP-IPWIRMLYA 224 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ +++A + + YL LP+Q ILK+MNR ++I+R+R P Sbjct: 225 YPTGITPAVVEAIQETPNFLLYLDLPLQHSHPAILKAMNRPWQGQVNDRLIERLRQALPK 284 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + + FIVGFPGET++ F+ ++ V + + F +SP GTP ++ +QV E +K Sbjct: 285 AVLRTSFIVGFPGETEEHFQHLLEFVQRHQFDHVGVFTFSPEEGTPAYHLPQQVPEPLKE 344 Query: 389 ERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VVLNS 442 ER L + +Q ++F N VGQ++ VL+E+ G+ +GRSP VV Sbjct: 345 ERRARLMQL--QQGIAFRRNREQVGQVVPVLLEQENPRTGEWIGRSPRFAPEVDGVVYVR 402 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 ++G ++ V+IT + L+G++V Sbjct: 403 GPGSLGSLVPVQITRAEPYDLFGQVV 428 >gi|238066630|sp|Q2JSD0|RIMO_SYNJA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO Length = 460 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 134/446 (30%), Positives = 229/446 (51%), Gaps = 31/446 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N D+ M + GY D AD +++NTC E A + S L + ++ Sbjct: 25 GCEKNRVDTEHMLGLLAQAGYRVEGDEDSADYVIVNTCSFIEAARRESVSTLMEL-AVQG 83 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV--- 149 +I ++AGC+AQ EE+LR P +VG Y+++ ++++RA G+RV Sbjct: 84 KKI--------IIAGCLAQHFQEELLREIPEAVAIVGTGDYHQIVQVIQRAERGERVNAV 135 Query: 150 -VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 DY ++ R Y A+L + EGCD C+FC++P+ RG + SR + Sbjct: 136 TSSLDYIADETVPR-------YRTTHAPVAYLRVAEGCDYRCSFCIIPHLRGKQRSRPIE 188 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++ EA +L GV E+ L+ Q + G L GE ++L+ +L +I + +R + Sbjct: 189 SILREAEQLAAEGVQELILISQITTNY-GLDLYGEP-RLAELIRALGQIP-IPWIRMLYA 245 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ +++A + + YL LP+Q ILK+MNR ++I+R+R P Sbjct: 246 YPTGITPAVVEAIQETPNFLLYLDLPLQHSHPAILKAMNRPWQGQVNDRLIERLRQALPK 305 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + + FIVGFPGET++ F+ ++ V + + F +SP GTP ++ +QV E +K Sbjct: 306 AVLRTSFIVGFPGETEEHFQHLLEFVQRHQFDHVGVFTFSPEEGTPAYHLPQQVPEPLKE 365 Query: 389 ERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VVLNS 442 ER L + +Q ++F N VGQ++ VL+E+ G+ +GRSP VV Sbjct: 366 ERRARLMQL--QQGIAFRRNREQVGQVVPVLLEQENPRTGEWIGRSPRFAPEVDGVVYVR 423 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 ++G ++ V+IT + L+G++V Sbjct: 424 GPGSLGSLVPVQITRAEPYDLFGQVV 449 >gi|78222094|ref|YP_383841.1| MiaB-like tRNA modifying enzyme [Geobacter metallireducens GS-15] gi|78193349|gb|ABB31116.1| MiaB-like tRNA modifying enzyme [Geobacter metallireducens GS-15] Length = 431 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 140/410 (34%), Positives = 218/410 (53%), Gaps = 19/410 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSF 83 QR + + GC++N ++S M + +G+ V +DAD+ V+NTC + K AE Sbjct: 2 QRVAISTLGCKINQFESAAMTESLGREGFRVVPFDEDADIYVINTCTVTAKTDAESRRLI 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +R +R VVV GC AQ + ++ P V +VVG + ELL A Sbjct: 62 RRALRRNPAAR--------VVVTGCYAQV-APDAVKDLPGVALVVGNSEKRSIGELLRDA 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 ++V+ +D S E E L + + + AFL +Q GCD FC++C+VPY RG Sbjct: 113 APAEKVMVSDISRERTAEGLRLESFAEHTR----AFLQVQNGCDAFCSYCIVPYARGRSR 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVR 262 S S S+ + R G E+ L G ++ A+ GLD T L SE K + R Sbjct: 169 SVSFSEALAGIRNFAAQGFREVVLTGIHLGAY---GLDLAPPTNLLALLEASEAEKAVPR 225 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR + P +++D L+ + + P+LH+P+QSG DR+L+ M RR+TA +R+ ++R+ Sbjct: 226 LRVGSVEPNELTDALVDFLARSETVCPHLHIPLQSGDDRVLERMGRRYTAAFFRERVERL 285 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 +V PDI I D I GFPGETD++F+ T+ L++++ A F YS R GT + M QV Sbjct: 286 VAVVPDIFIGCDVIAGFPGETDEEFQNTVRLIEELPVASLHVFPYSRREGTAAARMEGQV 345 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 D V R L++ ++ SF + VG+ + VL++ G++ G+ VG S Sbjct: 346 DGKVIRGRAEILREVGERKRRSFCERFVGRELAVLMQNRGRD-GEAVGLS 394 >gi|331090885|ref|ZP_08339729.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae bacterium 2_1_46FAA] gi|330405531|gb|EGG85062.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae bacterium 2_1_46FAA] Length = 440 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 149/449 (33%), Positives = 237/449 (52%), Gaps = 26/449 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M + S+G++ VN +AD+IV+NTC A E+ + + L Sbjct: 7 SLGCDKNLVDTEVMLGLLASKGHQMVNDEMEADVIVINTCCFIHDAKEESIQNILEMAEL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K KEG ++V GC+AQ EEI+ P V+ V+G +Y ++ E ++ A G+ V Sbjct: 67 K----KEGRLKALIVTGCLAQRYKEEIIEEIPEVDAVLGTTSYDKILEAIDEALEGRHCV 122 Query: 151 D-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + TD + +V G G A+L I EGCDK CT+C++P RG S + + Sbjct: 123 EMTDIDALPLVQSNRLVTTG-----GHFAYLKIAEGCDKHCTYCIIPKIRGNFRSVPMER 177 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 ++ EA L + GV E+ L+ Q + GK + GEK + LL L ++ G+ +R + Sbjct: 178 LLKEAEGLAEQGVKELILVAQETTLY-GKDIYGEK-SLHKLLKELCKVSGIQWIRILYCY 235 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P +++D LI+ + + YL LP+Q SD ILK M RR + + ++II ++R PDI Sbjct: 236 PEEITDELIQVMKEEKKICHYLDLPIQHASDEILKRMGRRTSKAQLKEIIGKLREEIPDI 295 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 + + I GFPGET + M+ VD++ + + F YSP TP + M Q++E VK + Sbjct: 296 TLRTTLITGFPGETKEQHEELMEFVDEMEFDRLGVFTYSPEEDTPAALMDNQIEEEVKED 355 Query: 390 RLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441 R Q +L E Q ++F+ A +G+ + VLIE ++ VGR+ P + ++ Sbjct: 356 R----QAELMELQQDIAFDLAEDMIGKEVLVLIEGKVADENAYVGRTYKDAPNVDGLIFV 411 Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468 + + GD KVR+T L GE+V Sbjct: 412 NTEEELMSGDFAKVRVTGALEYDLIGEIV 440 >gi|255659203|ref|ZP_05404612.1| tRNA-I(6)A37 modification enzyme MiaB [Mitsuokella multacida DSM 20544] gi|260848655|gb|EEX68662.1| tRNA-I(6)A37 modification enzyme MiaB [Mitsuokella multacida DSM 20544] Length = 430 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 132/393 (33%), Positives = 208/393 (52%), Gaps = 16/393 (4%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + + GC++N +++ ME +F +GYE V AD+ V+NTC + K + R Sbjct: 5 LTTLGCKVNQFETETMEGLFKQRGYEVVPFEARADVYVINTCSVTSLGDRKSRQIIRRAH 64 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--RFG 146 +E +V V GC AQ +EI + V VV+G + + + +E+A G Sbjct: 65 -------RENPQAIVAVCGCYAQVAPDEI-KAIEGVRVVLGTKERAHIVDYVEKAMQEDG 116 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + TD FE + + Y+ AFL I++GC FC++C++PY RG SR Sbjct: 117 IQGTITDIMKAKTFEDIPL----YDSPERTRAFLKIEDGCQNFCSYCIIPYARGPVKSRL 172 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 V EA KL+ G EI L G ++ A+ G+ L G+ T +D + + GL RLR Sbjct: 173 PEHVHREAEKLVAMGFKEIVLTGIHLGAY-GRDLPGD-ITLADACREVLSVPGLKRLRLG 230 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + ++S L + + +LHLP+Q+GSD++LK MNR + E+ ++I+ I Sbjct: 231 SLESIELSPELFALIREDERFCAHLHLPLQAGSDKVLKDMNRHYDTQEFARLIEHIEEEV 290 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P +AIS+D IVGFPGET++DF + V+K+ +A+ F YS R GTP + +QVDE V Sbjct: 291 PGVAISTDIIVGFPGETEEDFEQGLSFVEKMNFARMHVFPYSRRTGTPAAARKDQVDEAV 350 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 K ER+ +Q + F+ + +G+ + VL E Sbjct: 351 KKERVHRMQALADRKAEEFHRSFIGREMRVLFE 383 >gi|210610065|ref|ZP_03288244.1| hypothetical protein CLONEX_00430 [Clostridium nexile DSM 1787] gi|210152676|gb|EEA83682.1| hypothetical protein CLONEX_00430 [Clostridium nexile DSM 1787] Length = 430 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 127/440 (28%), Positives = 237/440 (53%), Gaps = 24/440 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + + GC++N Y++ M+ + GYE V + AD+ ++NTC + A K L Sbjct: 2 KRAALHNLGCKVNAYETEAMQQLLEENGYEIVPFKEGADVYIINTCTVTNMADRKSRQML 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--- 141 R + + D +VV AGC QA+ E +++V+G L ++L+ Sbjct: 62 HRAKKM-------NPDAIVVAAGCYVQAK-EASGEIDESIDIVIGNNKKKDLIQILDGFY 113 Query: 142 --RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + K V+D +++ E +E + + + + A++ +Q+GC++FCT+C++P+ R Sbjct: 114 EKKQGQNKAVIDINHTHE--YEEMHLNKTAEHTR----AYIKVQDGCNQFCTYCIIPFAR 167 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G SR+ VV E +L NG E+ L G +++++ G+D E L+ +++EI+G Sbjct: 168 GRVRSRAKEDVVREVTELAANGYQEVVLTGIHLSSY---GVDLENENLLSLILAVNEIEG 224 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R + PR +++ +K L+ + P+ HL +QSG D L+ MNRR+T+ EY + Sbjct: 225 IKRIRLGSLEPRIITEDFVKTISGLEKMCPHFHLSLQSGCDETLRRMNRRYTSEEYYEKC 284 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +R A+++D IVGFPGET+++F + +DK+ + + FKYS R GT + M Sbjct: 285 MLLRKYFAHPALTTDVIVGFPGETEEEFEKSKAFIDKVDFYETHIFKYSKREGTKAAVMD 344 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQS 437 Q+ E +K R L + +++++ + + VG +EVL+E+ K G+ VG + Sbjct: 345 NQIPEQIKTARSNELLELGQKKRIKYEEQFVGTTVEVLMEEQIKIDGENYQVGHTKEYVK 404 Query: 438 VVLNSKNHNIGDIIKVRITD 457 V L ++ + ++ ++I + Sbjct: 405 VALKTEANLQNKLVDIQIDN 424 >gi|226324639|ref|ZP_03800157.1| hypothetical protein COPCOM_02424 [Coprococcus comes ATCC 27758] gi|225207087|gb|EEG89441.1| hypothetical protein COPCOM_02424 [Coprococcus comes ATCC 27758] Length = 441 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 128/408 (31%), Positives = 219/408 (53%), Gaps = 31/408 (7%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+++ GYE V D AD+ V+NTC + A K + R R Sbjct: 10 GCKVNAYETEAMQELLEKNGYEIVPFHDLADVYVINTCSVTNMADRKSRQMIHRAR---- 65 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER------ARFG 146 K+ D ++V AGC QA+ + + +++V+G L LLE Sbjct: 66 ---KQNPDAVIVAAGCYVQAQAD-MGELDENIDIVIGNNKKKDLIRLLEEYFKEDIPEQM 121 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + V+D +++ E +E L + + + A+L +Q+GC++FCT+C++PY RG SR Sbjct: 122 QEVIDINHTFE--YESLHLSRTAEHTR----AYLKVQDGCNQFCTYCIIPYARGRVRSRK 175 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA----WR---GKGLDGEKCTFSDLLYSLSEIKG 259 VV+E R L ++G E+ L G ++++ W+ GK +G DL+ ++ ++G Sbjct: 176 KEDVVEEVRTLAEHGYQEVVLTGIHLSSYGLEWKDENGKQTEG----LLDLIRAVHGVEG 231 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R + PR +++ K L + P+ HL +QSG D LK MNRR+ A EYR+ Sbjct: 232 IKRIRLGSLEPRIVTEEFAKELACLPKICPHFHLSLQSGCDATLKRMNRRYDAAEYREKC 291 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + +R + A+++D IVGFP E++++F A+ D VD I + + FKYS R GT + M Sbjct: 292 ELLRKYFENPALTTDVIVGFPQESEEEFEASRDFVDSINFYETHIFKYSKRQGTKAAKMD 351 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 Q+ E+ K R + + R++ + + +G+ +EVL E+ + GK Sbjct: 352 GQIPEHEKTRRSNIMLELNRKKMQRYEEGWLGKKVEVLFEEMTERDGK 399 >gi|254413514|ref|ZP_05027284.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Microcoleus chthonoplastes PCC 7420] gi|196179621|gb|EDX74615.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Microcoleus chthonoplastes PCC 7420] Length = 445 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 141/449 (31%), Positives = 224/449 (49%), Gaps = 29/449 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRI 87 + GC+ N D+ + + GY ++ D A+ +++NTC E A E V + + Sbjct: 9 ISHLGCEKNRIDTEHILGLLVQAGYPVDSNEDLAEYVIVNTCSFIEAARTESVRTLV--- 65 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L + K +V+AGC+AQ E++L P VVG Y + E++ER G+ Sbjct: 66 -ELAEANKK------IVIAGCMAQHFQEKLLAELPEAVAVVGTGDYQNIVEVIERVEAGE 118 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEIS 204 RV S E + I D R R + A+L + EGC+ C FC++PY RG + S Sbjct: 119 RV--KAVSAEPTY----IADETTPRYRTTSEGVAYLRVAEGCNYRCAFCIIPYLRGNQRS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263 R++ +V EA +L GV E+ L+ Q + G L GE ++LL +L ++ +R+ Sbjct: 173 RTIESIVAEAEQLASQGVQELILISQITTNY-GVDLYGEP-KLAELLRALGKVDIPWIRM 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P +++ ++ A + ++PYL LP+Q +L++MNR QIID I+ Sbjct: 231 HY--AYPTGLTEPVMAAIQETPNVLPYLDLPLQHSHPEVLRAMNRPWQGRVNDQIIDHIK 288 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P+ + + FIVGFPGET+ F + V + F +SP GTP N+ V Sbjct: 289 TALPNAVLRTTFIVGFPGETEQHFNHLLQFVQHHEFDHVGVFTFSPEEGTPAYNLPNSVP 348 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439 + V ER L + + N VG+I++VLIE+ GK +GRS P + +V Sbjct: 349 QAVMEERRQTLMAVQQPITLKKNQGEVGKIVDVLIEQENPSTGKQIGRSARFAPEVDGLV 408 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 +G I++V ITD I LYG +V Sbjct: 409 YVQGEAPLGTIVEVEITDAGIYDLYGSVV 437 >gi|297544398|ref|YP_003676700.1| MiaB-like tRNA modifying protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842173|gb|ADH60689.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 449 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 129/439 (29%), Positives = 238/439 (54%), Gaps = 19/439 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M ++F GYE V+ + AD+ V+NTC + ++ K + + R Sbjct: 23 GCKVNQYETEVMAELFKKAGYEVVDFDEKADVYVINTCTVTNRSDMKSRQEIRKAR---- 78 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFGKRVV 150 K+ + +VV GC Q +++ P V++ +G + ++ EL+E + K V Sbjct: 79 ---KKNPNAVVVAVGCYVQVSPKDVFS-LPEVDIAIGTKNKDKIVELVEEFTQKHQKLSV 134 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + + ++E + Y + A++ IQ+GC+++CT+C++PY RG SR ++ Sbjct: 135 VNNIMTQKEYEEFEVT--AYTER--TRAYVKIQDGCNQYCTYCIIPYARGPVRSREPEKI 190 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 ++E ++ D+G EI L G ++ ++ G D + D++ + EI G+ R+R ++ P Sbjct: 191 LEEVKRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKRIHEIDGIKRIRLSSIEP 247 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 +++ +K L + + H+ +QSG D LK M RR+T EY+ +IDR+R D+A Sbjct: 248 VFLTEEFVKEIAKLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDRLRKYIKDVA 307 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I++D +VGFPGET+++F T V++I +++ FKYS R GT + QV ++K +R Sbjct: 308 ITTDVMVGFPGETEEEFLETYKFVEEICFSKMHVFKYSRRKGTRAYSFPNQVANHIKEDR 367 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNI-G 448 L + + + F ++ +G+ +EVL E+ K KG + G + SV + + Sbjct: 368 SKKLIELSKRCEYKFMESFIGKTLEVLFEQPVKNMKGYVEGLTDNYLSVAVKGDIKLLRN 427 Query: 449 DIIKVRITDVKISTLYGEL 467 +I V+I + K + L GE+ Sbjct: 428 EIYPVKIKERKDNFLIGEI 446 >gi|290968565|ref|ZP_06560103.1| MiaB-like protein [Megasphaera genomosp. type_1 str. 28L] gi|290781218|gb|EFD93808.1| MiaB-like protein [Megasphaera genomosp. type_1 str. 28L] Length = 440 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 128/397 (32%), Positives = 216/397 (54%), Gaps = 21/397 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N YD+ M +F + G+ + AD+ V+NTC + + +K + R + Sbjct: 8 TLGCRVNQYDTDSMRGLFAAAGFRTALFTETADVYVINTCSVTQMGEKKSRQLIRRAK-- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGK 147 K+ +VVV GC AQ ++L V+ VVG ++ +++ +A G Sbjct: 66 -----KQNPHSVVVVTGCYAQL-SPDVLAAMEGVDAVVGTNEKKKIVTIVQTLLQAPSGH 119 Query: 148 RVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + D +S D+FE + + R A L IQEGC+ FCT+C++PYTRG S Sbjct: 120 ALTAIHDIRHS-PDEFEEIPLYPAAVTHTR---ADLKIQEGCNNFCTYCIIPYTRGKLKS 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +V+EA++L++ G E+ L G ++ A+ GK L EK T + +L L E ++RLR Sbjct: 176 RRPDAIVEEAKRLVEAGFKELVLTGIHLGAY-GKEL-AEKPTLAHILRRLVEETDVLRLR 233 Query: 265 YTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 + ++ D LI+ + + + P+LH+P+Q+GSD ILK+MNR++T EY ++ ++ Sbjct: 234 LGSIDSLEVDDDLIRIINEAEQRICPHLHIPIQAGSDTILKAMNRQYTKQEYIGLLTHLQ 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P+I S+D I+GFPGET+ F TM+ + ++ Y+ +F +SPR GTP + M QV Sbjct: 294 QHIPNITFSTDLILGFPGETEALFEETMETLRQLPYSHIHAFPFSPRQGTPAATMAGQVS 353 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + R+ + Q+ + +G+ + VLIE+ Sbjct: 354 PVERKRRVEAVNALSAAQKQQVQQSFLGKTVHVLIEQ 390 >gi|168335412|ref|ZP_02693503.1| MiaB-like tRNA modifying enzyme YliG [Epulopiscium sp. 'N.t. morphotype B'] Length = 446 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 145/454 (31%), Positives = 231/454 (50%), Gaps = 37/454 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + G+ ++ D AD+I++NTC + A ++ + + Sbjct: 9 SLGCDKNLVDSEHMLGLLNEGGFVLISEEDKADVIIVNTCCFIDDAKQESIDSILEVAQY 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K K G ++V GC+A+ E+L P V+ VVG +Y ++ + V+ Sbjct: 69 K----KTGNCKALIVTGCMAERYKTELLEEMPEVDAVVGTTSYDKI------VHIARNVL 118 Query: 151 DTDYSVEDKFERLS----------IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 D + V+ FE ++ + GGY A++ I EGC+ CT+C++P RG Sbjct: 119 DQN-EVKQHFEDVNRPHLENMPRVLTTGGY------FAYIKIAEGCNSHCTYCIIPSLRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR ++V+E +L ++GV EI L+ QN + G+D + T ++LL LS+I G+ Sbjct: 172 QYRSRPKEKIVEEVMQLAEDGVSEIILVAQNTTMY---GID-KGYTLTNLLQELSDIDGI 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R +P +++D LI+ + YL +P+Q SD+ILK MNR+ + +Q+I Sbjct: 228 EWIRILYCYPENITDELIEEIKVNSKVCKYLDIPIQHSSDQILKRMNRKSSNAFLKQLIQ 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R P+I I S IVGFPGET++DF +D V + + F YS GTP + + Sbjct: 288 KLRDNIPNIMIRSTLIVGFPGETEEDFNNLIDFVKETKLDRLGVFTYSQEEGTPAAKLAN 347 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEK---GKLVGRSPWLQ 436 Q+DE++K R + K +E VG+I VLIE K KE G+ G +P + Sbjct: 348 QIDEHIKESRKNTIMKIQQEISKQICATKVGKIFRVLIEGKLEKEDVYIGRTYGDAPVVD 407 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 S V ++ GD I V+IT L GE+V Sbjct: 408 SKVFVEYEGDLMCGDFISVKITQADEYDLIGEVV 441 >gi|254974871|ref|ZP_05271343.1| radical SAM-superfamily protein [Clostridium difficile QCD-66c26] gi|255092258|ref|ZP_05321736.1| radical SAM-superfamily protein [Clostridium difficile CIP 107932] gi|255313998|ref|ZP_05355581.1| radical SAM-superfamily protein [Clostridium difficile QCD-76w55] gi|255516678|ref|ZP_05384354.1| radical SAM-superfamily protein [Clostridium difficile QCD-97b34] gi|255649777|ref|ZP_05396679.1| radical SAM-superfamily protein [Clostridium difficile QCD-37x79] gi|260682934|ref|YP_003214219.1| radical SAM-superfamily protein [Clostridium difficile CD196] gi|260686532|ref|YP_003217665.1| radical SAM-superfamily protein [Clostridium difficile R20291] gi|260209097|emb|CBA62258.1| radical SAM-superfamily protein [Clostridium difficile CD196] gi|260212548|emb|CBE03514.1| radical SAM-superfamily protein [Clostridium difficile R20291] Length = 444 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 140/455 (30%), Positives = 244/455 (53%), Gaps = 29/455 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++S GC N+ D+ M + ++GY+ + ++AD+I++NTC E A ++ + Sbjct: 3 KIALESLGCSKNLVDAEIMMGILNNKGYKLIGDFEEADVIIVNTCGFIESAKQES---ID 59 Query: 86 RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I N S +K+ G+L L++V GC+AQ EE+ P ++ +VG +Y + ++L+ Sbjct: 60 TIINF--SELKKTGNLKLLIVTGCLAQRYSEELKTEIPEIDAIVGTGSYQNIDKILKELS 117 Query: 145 FGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 ++V D ++ + R Y A+L I EGC CT+C++P RG Sbjct: 118 EMHQIVSLNDIEFVFNEDLPR-------YISTPSYMAYLKIGEGCSNNCTYCIIPKLRGK 170 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 SR ++ EA+KL ++GV E+ ++ Q+ + G L G K S+LL L++I G Sbjct: 171 YRSRKFEDIIKEAKKLAESGVKELVVIAQDTTKY-GFDLYG-KERLSELLEELAKIDGFK 228 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R S+P +++ LI+ D + Y +P+Q S+ ILK MNR+ T + I+ Sbjct: 229 WIRVMYSYPESITEELIQVIKKYDNICSYFDMPIQHASNNILKLMNRKTTKEDILNKINL 288 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IRS PD + + IVGFPGET+DDF+ +D V+++ + + +F YS TP + Sbjct: 289 IRSNIPDAILRTTIIVGFPGETEDDFKQLVDFVEEVKFDRLGAFAYSREEDTPADRLPNH 348 Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWL 435 +DE VK +R L+ +Q+K+ E+ ND +G+ EVLIE+ ++ G+ G + + Sbjct: 349 IDEEVKIQRRDTLMMIQQKISEE---LNDKKIGKTYEVLIEEQIEDNVYTGRTQGDAEEI 405 Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 S+V + N +G+ + V+I D L G+++ Sbjct: 406 DSIVYVKSVDNLEVGEFVSVQINDAMEYDLMGDVL 440 >gi|295109586|emb|CBL23539.1| MiaB-like tRNA modifying enzyme [Ruminococcus obeum A2-162] Length = 438 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 130/439 (29%), Positives = 245/439 (55%), Gaps = 17/439 (3%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ + + GC++N Y+ M+ + GYE V + AD+ ++NTC + A K Sbjct: 1 MKKKVALHNLGCKVNAYEVEAMQQLLEKAGYEIVPFTEGADVYLINTCTVTNIADRKSRQ 60 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L + + + D +VV AGC AQA+ E+ L+ V++++G ++ E+LE Sbjct: 61 MLHKAKKM-------NPDAIVVAAGCYAQADTEK-LKEDNAVDLILGNNQKTQIVEVLEE 112 Query: 143 --ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 K+V + + ++E LSI + V A++ +Q+GC++FCT+C++P+ RG Sbjct: 113 YEKEHSKQVQVIEINHTKEYEELSIEQTAEH----VRAYIKVQDGCNQFCTYCIIPFARG 168 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR ++ V+ E L G E+ L G +++++ E+ + L+ ++S++ G+ Sbjct: 169 RVRSRKIADVLREVETLASKGYKEVVLTGIHLSSYGVDFPKEERESLLSLIQAVSKVAGI 228 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + PR +++ ++ + P+ HL +QSG ++ LK+MNRR++A EY + + Sbjct: 229 QRIRLGSLEPRIITEEFLEGIVATGKVCPHFHLSLQSGCNKTLKNMNRRYSAQEYAEKCE 288 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR P A+++D IVGFP ET++DF + + V I + + FKYS R GT + M Sbjct: 289 LIRKYYPAPALTTDVIVGFPMETEEDFEESYEFVKNIHFYETHIFKYSRRHGTKAAAMDG 348 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL--VGRS-PWLQS 437 Q+ E VKA+R L + + + +A +G+ IE+L+E+ +E GK+ VG S ++++ Sbjct: 349 QLTEAVKAQRSEKLLELHDIRAKEYEEAMIGKTIELLLEEEIEEDGKMWYVGHSREYVRA 408 Query: 438 VVLNSKNHNIGDIIKVRIT 456 V+ ++ H + D+++ ++T Sbjct: 409 VIEKTEVHQVNDLVEAKVT 427 >gi|255100347|ref|ZP_05329324.1| radical SAM-superfamily protein [Clostridium difficile QCD-63q42] gi|255306284|ref|ZP_05350455.1| radical SAM-superfamily protein [Clostridium difficile ATCC 43255] Length = 444 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 138/454 (30%), Positives = 239/454 (52%), Gaps = 27/454 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++S GC N+ D+ M + ++GY+ + ++AD+I++NTC E A ++ + Sbjct: 3 KIALESLGCSKNLVDAEIMMGILNNKGYKLIGDFEEADVIIVNTCGFIESAKQESIDTII 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 LK K G L++V GC+AQ EE+ P ++ +VG +Y + ++L+ Sbjct: 63 NFAELK----KTGNLKLLIVTGCLAQRYSEELKTEIPEIDAIVGTGSYQNIDKILKELSE 118 Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 ++V D ++ + R Y A+L I EGC CT+C++P RG Sbjct: 119 MHQIVSLNDIEFVFNEDLPR-------YISTPSYMAYLKIGEGCSNNCTYCIIPKLRGKY 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR ++ EA+KL ++GV E+ ++ Q+ + G L G K S+LL L++I G Sbjct: 172 RSRKFEDIIKEAKKLAESGVKELVVIAQDTTKY-GFDLYG-KERLSELLEELAKIDGFKW 229 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R S+P +++ LI+ D + Y +P+Q S+ ILK MNR+ T + I+ I Sbjct: 230 IRVMYSYPESITEELIQVIKKYDNICSYFDMPIQHASNNILKLMNRKTTKEDILNKINLI 289 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RS PD + + IVGFPGET+DDF+ +D V+++ + + +F YS TP + + Sbjct: 290 RSNIPDAILRTTIIVGFPGETEDDFKQLVDFVEEVKFDRLGAFAYSREEDTPADRLPNHI 349 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQ 436 DE VK +R L+ +Q+K+ E+ ND +G+ EVLIE+ ++ G+ G + + Sbjct: 350 DEEVKIQRRDTLMMIQQKISEE---LNDKKIGKTYEVLIEEQIEDNVYTGRTQGDAEEID 406 Query: 437 SVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 S+V + N +G+ + V+I D L G+++ Sbjct: 407 SIVYVKSVDNLEVGEFVSVQINDAMEYDLMGDVL 440 >gi|284929205|ref|YP_003421727.1| 30S ribosomal protein S12P methylthiotransferase [cyanobacterium UCYN-A] gi|284809649|gb|ADB95346.1| SSU ribosomal protein S12P methylthiotransferase [cyanobacterium UCYN-A] Length = 439 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 141/452 (31%), Positives = 236/452 (52%), Gaps = 35/452 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRI 87 + GC+ N DS + + ++GY ++ + AD +V+NTC I++ E V + + Sbjct: 9 ISHLGCEKNRIDSEHILGLLAAEGYSVSSNENLADYVVVNTCSFIQQAREESVRTLVELA 68 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 N K +++AGC+AQ +++L P V +VG Y + + ++R G+ Sbjct: 69 ENNKK----------IIIAGCMAQHFQDQLLEELPEVVAIVGTGNYQEIVKTVQRVELGE 118 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEIS 204 RV+D S + F I D R R A+L I EGC+ CTFC++P+ RG + S Sbjct: 119 RVIDI--SQKPTF----IADETVPRYRTTNEGVAYLRIAEGCNYRCTFCIIPHLRGNQRS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263 R++ +V EA++L + GV EI ++ Q + G L G K ++LL +L ++ +R+ Sbjct: 173 RTIESIVAEAQQLANEGVQEIIIVSQITTNY-GLDLYG-KVKLAELLQALGKVNVPWIRV 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P ++ ++KA ++ ++PYL LP+Q +ILK+MNR +II IR Sbjct: 231 HY--AYPTGLTAEVLKAVKEVPNVIPYLDLPLQHSHPKILKAMNRPWKEAINDEIIKSIR 288 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PD+ + + FIVGFPGETD+ F + + + + F +SP GTP M +QV Sbjct: 289 ASIPDVVLRTTFIVGFPGETDEYFEHLVKFIKRHHFDHVGVFVFSPEEGTPSYKMPDQVP 348 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436 + ER L+ +Q+ + ++ N VG+I++VLIE+ + + +GR SP + Sbjct: 349 LEIAQERRDYLMEIQQPISNRK---NQQYVGKIVKVLIEQENTKTHQYIGRSIKSSPDVD 405 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + II V IT LYG++V Sbjct: 406 GVVFVKGKAQLNSIIPVEITKADAYDLYGKVV 437 >gi|282883211|ref|ZP_06291810.1| protein YqeV [Peptoniphilus lacrimalis 315-B] gi|281297023|gb|EFA89520.1| protein YqeV [Peptoniphilus lacrimalis 315-B] Length = 431 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 137/456 (30%), Positives = 247/456 (54%), Gaps = 35/456 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVY 81 + + F + + GC++N Y+S M ++F GY +V N D AD+ ++NTC + + K Sbjct: 1 MAKTFSILTLGCKVNQYESEAMAELFEKNGYIQVDNDTDVADVYIVNTCTVTNLSDRKSR 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 ++ R + +E D V V GC AQ +E+ + V+VV+G ++ +L+E Sbjct: 61 QYIRRAK-------RENPDSTVAVVGCYAQVAPKEV-EKIEGVDVVIGTSERSKIVDLIE 112 Query: 142 RARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 A+ + ++ D + F+ + I D +++ R +++ +Q+GC+++CT+C++PY R Sbjct: 113 EAKEEDKKINIVRDIKKDRDFQFIKI-DENFHKTR---SYMKVQDGCNRYCTYCIIPYAR 168 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G SR + V EA +L + G EI L G +V ++ G+D DL+ +++E+ G Sbjct: 169 GTIRSRRIGDCVREAIRLANAGYKEIILTGIHVGSY---GVDLGPVRLIDLIEAIAEVDG 225 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R ++ P +S+ ++ L + HL +QSGS+++LK MNR + E+ + Sbjct: 226 IERIRLSSVEPNIISEDFMRRAIACSKLCDHFHLSLQSGSNKVLKDMNRHYNREEFIEKT 285 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 I+ P +++D IVGFPGE+D+DF +M +V ++ +++ FKYS R TP ++ Sbjct: 286 KIIKKYMPYAGLTTDIIVGFPGESDEDFEDSMSIVREVEFSKVHVFKYSKRKNTPAADRA 345 Query: 380 EQVDENVK---AERLLCLQ----KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 +QVD N+K +E L+ LQ KK RE+ + + ++VL E+ ++G G + Sbjct: 346 DQVDGNIKIKRSEELIKLQDQYLKKFREKNMP-------RTLKVLFEEF--DQGYYFGYT 396 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + S I I+ VR+ D + +GELV Sbjct: 397 DNYIRVKVKSDKDLINKILDVRLVDNE-EVAFGELV 431 >gi|126698925|ref|YP_001087822.1| radical SAM superfamily protein [Clostridium difficile 630] gi|123174606|sp|Q18BJ2|RIMO_CLOD6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|115250362|emb|CAJ68184.1| Ribosomal protein S12 methylthiotransferase [Clostridium difficile] Length = 444 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 138/454 (30%), Positives = 239/454 (52%), Gaps = 27/454 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++S GC N+ D+ M + ++GY+ + ++AD+I++NTC E A ++ + Sbjct: 3 KIALESLGCSKNLVDAEIMMGILNNKGYKLIGDFEEADVIIVNTCGFIESAKQESIDTII 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 LK K G L++V GC+AQ EE+ P ++ +VG +Y + ++L+ Sbjct: 63 NFAELK----KTGNLKLLIVTGCLAQRYSEELKTEIPEIDAIVGTGSYQNIDKILKELSE 118 Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 ++V D ++ + R Y A+L I EGC CT+C++P RG Sbjct: 119 IHQIVSLNDIEFVFNEDLPR-------YISTPSYMAYLKIGEGCSNNCTYCIIPKLRGKY 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR ++ EA+KL ++GV E+ ++ Q+ + G L G K S+LL L++I G Sbjct: 172 RSRKFEDIIKEAKKLAESGVKELVVIAQDTTKY-GFDLYG-KERLSELLEELAKIDGFKW 229 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R S+P +++ LI+ D + Y +P+Q S+ ILK MNR+ T + I+ I Sbjct: 230 IRVMYSYPESITEELIQVIKKYDNICSYFDMPIQHASNNILKLMNRKTTKEDILNKINLI 289 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RS PD + + IVGFPGET+DDF+ +D V+++ + + +F YS TP + + Sbjct: 290 RSNIPDAILRTTIIVGFPGETEDDFKQLVDFVEEVKFDRLGAFAYSREEDTPADRLPNHI 349 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQ 436 DE VK +R L+ +Q+K+ E+ ND +G+ EVLIE+ ++ G+ G + + Sbjct: 350 DEEVKIQRRDTLMMIQQKISEE---LNDKKIGKTYEVLIEEQIEDNVYTGRTQGDAEEID 406 Query: 437 SVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 S+V + N +G+ + V+I D L G+++ Sbjct: 407 SIVYVKSVDNLEVGEFVSVQINDAMEYDLMGDVL 440 >gi|310658985|ref|YP_003936706.1| hypothetical protein CLOST_1681 [Clostridium sticklandii DSM 519] gi|308825763|emb|CBH21801.1| conserved protein of unknown function [Clostridium sticklandii] Length = 442 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 147/454 (32%), Positives = 234/454 (51%), Gaps = 29/454 (6%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 F+ + GC N+ DS M ++ G ++V+S AD+ V+NTC E A E+ + + Sbjct: 6 FISTLGCSKNLVDSEVMLNILLENGLQKVDSPQLADIAVINTCGFIESAKEESINEI--- 62 Query: 88 RNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTY---YRLPELLERA 143 L+ ++ K+ G L ++V GC++Q EE+ + P V+ +G ++ Y + + LE Sbjct: 63 --LEIAKYKQIGKLKHLIVTGCLSQRYSEELKKELPEVDSFLGTTSFEHIYNIIQGLELG 120 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 ++D ++ ++ +R S++ Y TAFL I EGCD CT+C++P RG Sbjct: 121 ENNSLILDINHDLKPDSKR-SLLTEKY------TAFLKIAEGCDNLCTYCIIPKLRGKYR 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLV 261 SR L +V EA+ L +GV EI ++ Q+ + GLD EK + LL L+ I+ L Sbjct: 174 SRKLEDIVKEAKVLAASGVKEIIVIAQDTTKY---GLDIYNEK-SLPRLLRELNAIEDLN 229 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R+ S+P D+ LI + D + Y +P+Q D++LK MNR+ T I Sbjct: 230 WIRFLYSYPEDIDLDLILTVKESDKVCSYFDMPIQHSHDQVLKRMNRKTTGKHIEDTIAL 289 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ P+ + + I GFPGETD++F A D V KI + + F YS GTP + M Q Sbjct: 290 IRAHIPEAVLRTTLITGFPGETDEEFDALYDFVKKIEFDRLGVFAYSKEEGTPAAIMSGQ 349 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437 V E +K ER + + +E + N A +G+ EV+IEK E RS P + Sbjct: 350 VAEEIKEERKNKIMQLQQEISLRKNQALIGKDFEVIIEKE-IEPNLYEARSYRDVPEIDG 408 Query: 438 VVLNS--KNHNIGDIIKVRITDVKISTLYGELVV 469 ++ +HN G+ IKV I D L G+ ++ Sbjct: 409 IIYVKALASHNEGEFIKVTIKDAMEYDLLGDEII 442 >gi|297183256|gb|ADI19395.1| 2-methylthioadenine synthetase [uncultured Spirochaetales bacterium HF0500_06B09] Length = 455 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 130/398 (32%), Positives = 213/398 (53%), Gaps = 21/398 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R V++ GC++N ++ ++ F +GY V+S D AD+IV+N+C + +A K + L Sbjct: 6 RVTVETLGCRLNAFEGDALKADFSRRGYRVVDSGDPADVIVINSCTVTGQADRKSRNALY 65 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R R + + + E LVV GC+A + + + P V+ VV + + +++ A Sbjct: 66 RARRIGD--LDEDSRPLVVATGCMATGQ-QATVSALPGVDYVVDNEHKAGIAAIVD-AHL 121 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + F D G + R FL IQ+GCD C+FC++P+ RG ISR Sbjct: 122 SGEISPPSAVPSGPFA----YDQGEHTARA-RRFLKIQDGCDNRCSFCIIPFVRGRAISR 176 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L+ ++DEAR++ID+G EI + G N+ + G++ F+ L+ L + G R+R Sbjct: 177 PLAAILDEARQIIDDGFHEIVITGVNIGRYLHDGVN-----FATLIEKLLALPGQFRVRL 231 Query: 266 TTSHPRDMSDCLIKAHGDL---DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 ++ P D I DL + L P+LHL +QSGSDR+L +M R + + Q+ID Sbjct: 232 SSLEP----DHQIAPAIDLLTDERLCPHLHLCLQSGSDRVLLAMRRLYNLESFEQLIDNA 287 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R VRPD+ ++D +VGFPGETD DF AT V+++G+ +F+Y+ R GT + M QV Sbjct: 288 RHVRPDLNATTDILVGFPGETDADFAATCRAVERLGFTHCHTFRYAKRNGTRAARMENQV 347 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 D+ K R ++K + ++ +G ++L+E Sbjct: 348 DDATKQRRSNTVRKLAATNRAAYLRRLLGNKQKLLVES 385 >gi|312797207|ref|YP_004030129.1| tRNA 2-methylthioadenosine synthase [Burkholderia rhizoxinica HKI 454] gi|312168982|emb|CBW75985.1| tRNA 2-methylthioadenosine synthase [Burkholderia rhizoxinica HKI 454] Length = 288 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 112/233 (48%), Positives = 152/233 (65%), Gaps = 13/233 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +P++ ++K++GCQMN YDS +M D+ ++G + +S +DAD+I+ NTC IREKA EKV+ Sbjct: 1 MPKKVYIKTFGCQMNEYDSDKMVDVLGAAEGLIKTDSPEDADVILFNTCSIREKAQEKVF 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S LGR+R LK R DLL+ V GCVA EG I+ R+P V++V GPQT +RLP +++ Sbjct: 61 SDLGRVRELKQVRP----DLLIGVGGCVASQEGAAIVARAPYVDLVFGPQTLHRLPAMID 116 Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R G VD + +KF+ L R G TAF++I EGC K+C++CVVPYTRG Sbjct: 117 ARRASGHAQVDISFPEIEKFDNLPP-----PRVEGPTAFVSIMEGCSKYCSYCVVPYTRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLL 251 E+SR L V+ E L D GV E+TLLGQNVNA+RG G E FS L+ Sbjct: 172 EEVSRPLDDVLTEVAGLADQGVREVTLLGQNVNAYRGAISAGAAEIADFSTLI 224 >gi|253578849|ref|ZP_04856120.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849792|gb|EES77751.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 445 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 145/457 (31%), Positives = 231/457 (50%), Gaps = 32/457 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + S GC N+ DS M + G+E V+ +A+ IV+NTC A E+ + + Sbjct: 2 KLLFVSLGCDKNLVDSEEMLGLLTGNGFEIVDDETEAEAIVVNTCCFINDAKEESVNTIL 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + K K G ++VV GC+AQ EI+ P V+ V+G +Y + + + A Sbjct: 62 EMAEYK----KTGSCKVLVVTGCMAQRYKNEIIEEVPEVDAVLGTTSYGDILKAIREAME 117 Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 GK D DY + +K + + GG+ +L I EGCDK CT+C++P RG Sbjct: 118 GKHFQEFKDIDY-LPEKLGKRVLTTGGH------FGYLKIAEGCDKHCTYCIIPKLRGKF 170 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + ++V +A+++ + GV E+ L+ Q + G + G+K + LL L +IKG+ Sbjct: 171 RSVPMERLVTQAKEMAEEGVKELILVAQETTVY-GTDIYGKK-SLHILLKELCKIKGIRW 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R +P ++ D LI+ + + YL LP+Q SDRILK M RR T E +I++++ Sbjct: 229 IRVLYCYPEEIYDELIQTMKEEKKICHYLDLPIQHASDRILKRMGRRTTQAELVEIVNKL 288 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PDI + + I GFPGET +D M VD++ + + F YSP TP + M +QV Sbjct: 289 RREIPDIVLRTTLISGFPGETQEDHEELMSFVDEMEFDRLGVFTYSPEEDTPAATMPDQV 348 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRS----P 433 E VK R ++ LQ Q++S++ +GQ + V+IE ++ +GR+ P Sbjct: 349 AEEVKEARRDEIMELQ-----QEISYDKGTDRIGQELLVMIEGKVADESAYIGRTYGDAP 403 Query: 434 WLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + + + GD KVR+T L GEL Sbjct: 404 KVDGYIFVQTGELLMTGDFAKVRVTGALEYDLIGELA 440 >gi|239623774|ref|ZP_04666805.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521805|gb|EEQ61671.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 448 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 144/453 (31%), Positives = 235/453 (51%), Gaps = 23/453 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F S GC N+ D+ +M + G+ + +AD+I++NTC A E+ + + Sbjct: 2 KLFCVSLGCDKNLVDTEKMLGLLGGTGFTFTDDEMEADVILVNTCCFIGDAKEESVNTIL 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + LK +EG ++V GC+AQ +EIL P V+ ++G +Y + ++++ Sbjct: 62 DMARLK----EEGACRALIVTGCLAQRYKQEILDEIPEVDAILGTTSYEDVAGIVKQVLE 117 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 GK + S D E G G AFL I EGCDK CT+C++PY RG S Sbjct: 118 GKGITHLT-SFHDLGELPDTQAGRVVTTGGYYAFLKIAEGCDKRCTYCIIPYLRGPYRSV 176 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + Q+++EAR+L GV E+ L+ Q + GK + G K + LL+ L++I G+ +R Sbjct: 177 PMEQLLEEARQLASGGVKELILVAQETTLY-GKDIYGGK-SLPKLLHELAQIPGIQWIRI 234 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P +++D LI+A + + YL +P+Q S+RILK M RR E + I ++R Sbjct: 235 QYCYPEEITDELIEAIRSEEKVCHYLDIPIQHASNRILKRMGRRTNREELTERIAKLRKE 294 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDIA+ + I GFPGET D MD V+++ + + F YS TP + +QV + Sbjct: 295 IPDIALRTTMISGFPGETQADHEELMDFVNEMEFERLGVFAYSAEEDTPAYSYPDQVPQE 354 Query: 386 VKAER---LLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436 VK ER ++ LQ Q ++F + VG+I+ VLIE ++ VGR+ P + Sbjct: 355 VKEERRDEIMELQ-----QDIAFGHCEDMVGRILTVLIEGKVVDEPVYVGRTYMDAPGVD 409 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467 ++ + + GD ++V++T L GE+ Sbjct: 410 GLIFVNAEMELMSGDFVRVKVTGAAEYDLIGEV 442 >gi|153810776|ref|ZP_01963444.1| hypothetical protein RUMOBE_01160 [Ruminococcus obeum ATCC 29174] gi|149833172|gb|EDM88254.1| hypothetical protein RUMOBE_01160 [Ruminococcus obeum ATCC 29174] Length = 445 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 146/447 (32%), Positives = 224/447 (50%), Gaps = 22/447 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + G+E V+S ++AD IV+NTC A E+ + + + Sbjct: 7 SLGCDKNLADSEEMLGLLTGNGHEIVDSEEEADAIVINTCCFIHDAKEESVNTILEMAEY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---K 147 K K G +++V GC+AQ EEI P V+ V+G +Y + + L A G + Sbjct: 67 K----KTGPCKILIVTGCMAQRYKEEITEEIPEVDAVLGTTSYGDIVKALNEAEAGHVFQ 122 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D + ED R+ I GG+ +L I EGCDK CT+C++P RG S Sbjct: 123 EFKDINALPEDSGRRV-ITTGGH------FGYLKIAEGCDKHCTYCIIPSLRGKFRSVPE 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +++ +A + GV E+ L+ Q + G L G+K T LL L +IKG+ +R Sbjct: 176 ERLLKQAEYMASQGVRELILVAQETTVY-GTDLYGKK-TLHILLKKLCQIKGIRWIRVLY 233 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P ++ D LI+ + + YL LP+Q SDRILK M RR + + II ++R P Sbjct: 234 CYPEEIYDELIQVMKEEKKICHYLDLPIQHASDRILKRMGRRTSKAQLVGIITKLRREIP 293 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 DI + + I GFPGET++D + M+ VD++ + + F YSP GTP M EQV E +K Sbjct: 294 DIVLRTSLITGFPGETEEDHQELMEFVDEMEFDRLGVFTYSPEEGTPAETMEEQVPEELK 353 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSK 443 ER + + +E + + +GQ + V+IE + +GR+ P + + Sbjct: 354 EERRDEIMELQQEISLEKGNDRIGQELLVMIEGKVSGESAYIGRTYGDAPKVDGYMFVQT 413 Query: 444 NHNI--GDIIKVRITDVKISTLYGELV 468 + GD KV++T L GEL Sbjct: 414 GELLVTGDFAKVKVTGAMEYDLIGELA 440 >gi|266623302|ref|ZP_06116237.1| RNA modification enzyme, MiaB family [Clostridium hathewayi DSM 13479] gi|288864920|gb|EFC97218.1| RNA modification enzyme, MiaB family [Clostridium hathewayi DSM 13479] Length = 446 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 141/453 (31%), Positives = 231/453 (50%), Gaps = 25/453 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + S GC N+ D+ M + GY + +AD+IV+NTC A E+ + + Sbjct: 2 KLLCISLGCDKNLVDTEMMLGLLNRDGYTFTDDEYEADVIVINTCCFIGDAKEESVNTI- 60 Query: 86 RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 L+ +++KE G ++V GC+AQ +EI+ P V+ ++G TY + +L Sbjct: 61 ----LEMAQMKEVGKCKALIVTGCLAQRYKQEIVDEIPEVDGILGTTTYDEISHVLAETL 116 Query: 145 FGKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G+ V D D E K +R+ G Y AFL I EGCDK CT+C++P RG Sbjct: 117 DGREHVQCFHDLDIIPEVKTDRVITTGGHY-------AFLKIAEGCDKHCTYCIIPSLRG 169 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S + ++V EA+ L D GV E+ L+ Q + G L G+K + +LL L I G+ Sbjct: 170 NFRSVPMERLVSEAQSLADQGVKELILVAQETTLY-GVDLYGKK-SLPELLKKLCRISGI 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R +P +++D LI+ D + Y+ +P+Q SD IL+ M RR + + +++I Sbjct: 228 QWIRIQYCYPEEITDELIQTMKTEDKICHYIDMPIQHASDTILRRMGRRTSRAQLKEMIG 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++RS PDIAI + I GFPGET++D M+ VD++ + + F YS TP + + Sbjct: 288 KLRSEIPDIAIRTTLISGFPGETEEDHEILMEFVDEMEFERLGVFAYSAEEDTPAAGFPD 347 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436 QV + VK ER + + +E + + VG+ +EV+IE ++ VGR+ P + Sbjct: 348 QVLQEVKEERRDAIMELQQEISFDHSQSMVGRSLEVMIEGKVADENAYVGRTYMDGPGVD 407 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467 ++ + G ++ R+T L GE+ Sbjct: 408 GMIFIQTGEELMSGTFVRARVTGALEYDLIGEI 440 >gi|302386329|ref|YP_003822151.1| MiaB-like tRNA modifying enzyme YliG [Clostridium saccharolyticum WM1] gi|302196957|gb|ADL04528.1| MiaB-like tRNA modifying enzyme YliG [Clostridium saccharolyticum WM1] Length = 487 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 146/453 (32%), Positives = 230/453 (50%), Gaps = 25/453 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84 + S GC N+ D+ M + GY + +AD+IV+NTC I + E + + L Sbjct: 43 KLLCVSLGCDKNLVDTEMMLGLLNKDGYTFTDDEYEADVIVINTCCFIGDAKEESINTIL 102 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + + + K ++V GC+AQ +EI+ P V+ ++G TY + +L A Sbjct: 103 EMAQRKGDGKCK-----ALIVTGCLAQRYKQEIIDEIPEVDGILGTSTYDEISHVLSDAL 157 Query: 145 FGK----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 GK R D D E + ER+ G Y AFL I EGCDK CT+C++P RG Sbjct: 158 GGKEHVQRFHDLDGLPEVETERILTTGGHY-------AFLKIAEGCDKHCTYCIIPSLRG 210 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S + ++V EA +L + GV E+ L+ Q + G L GEK LL L I G+ Sbjct: 211 NYRSVPMERLVKEAERLAEMGVKELILVAQETTLY-GLDLYGEK-ALPKLLKKLCRISGI 268 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R +P +++D LI+ + + + YL LP+Q SDRILK M RR T + ++I++ Sbjct: 269 RWIRIQYCYPEEITDELIQTIKEEEKVCNYLDLPIQHASDRILKRMGRRTTKAQLQEIVE 328 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R PDIA+ + I GFPGET +D M+ VD++ + + F YS TP + + Sbjct: 329 KLRKEIPDIALRTTLISGFPGETQEDHEELMEFVDEMEFQRLGVFVYSAEEDTPAAEFPD 388 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436 QV + VK ER + + +E F+ + +G+ +EV+IE ++ VGR+ P + Sbjct: 389 QVLQEVKEERRDAIMELQQEISYDFSRSMIGKTLEVMIEGKVADENAYVGRTYMDGPGVD 448 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467 ++ + + GD VR+T L GEL Sbjct: 449 GMIFVQTDEELMSGDFASVRVTGAMEYDLIGEL 481 >gi|325265342|ref|ZP_08132066.1| 2-methylthioadenine synthetase [Clostridium sp. D5] gi|324029343|gb|EGB90634.1| 2-methylthioadenine synthetase [Clostridium sp. D5] Length = 440 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 145/451 (32%), Positives = 235/451 (52%), Gaps = 30/451 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M + S+GY+ + AD+IV+NTC A E+ + + Sbjct: 7 SLGCDKNLVDTEVMLGLLASRGYQMTDDETAADIIVINTCCFIHDAKEESIQNILEMAEY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K KEG +VV GC+A+ +EIL P V+ V+G +Y ++ E ++ A G+ V Sbjct: 67 K----KEGSLKALVVTGCLAERYRQEILDEIPEVDAVLGTTSYDKILEAVDGALKGQHSV 122 Query: 151 ---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D + E + RL G + A+L I EGCDK CT+C++P RG S + Sbjct: 123 TISDINGIPEVETNRLVTTGGHF-------AYLKIAEGCDKHCTYCIIPKIRGNFRSVPM 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +++ EA+ L + GV E+ L+ Q + GK + GEK + LL L ++G+ +R Sbjct: 176 EKLLKEAQYLAEQGVKELILVAQETTLY-GKDIYGEK-SLHLLLKELCRVQGIRWIRVLY 233 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P +++D LI+ + + + YL LP+Q +D IL+ M RR + E II ++RS P Sbjct: 234 CYPEEITDELIQVMKEEEKICHYLDLPIQHANDEILRRMGRRTSKQELTDIICKLRSEIP 293 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 DI + + I GFPGET + M+ VD++ + + F YSP TP + M +Q+D+ VK Sbjct: 294 DICLRTTLITGFPGETKEQHEELMEFVDEMEFDRLGVFTYSPEEDTPAALMTDQIDDEVK 353 Query: 388 AERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439 ER Q L E Q+++F++A VG+ + V+IE ++ VGR+ P + ++ Sbjct: 354 EER----QADLMELQQEIAFDNAERMVGREVLVMIEGKVADENAYVGRTYRDAPNVDGLI 409 Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + + GD +V ++ L G LV Sbjct: 410 FVNTEEELMSGDFARVNVSGAVDYDLIGGLV 440 >gi|119510100|ref|ZP_01629240.1| hypothetical protein N9414_19797 [Nodularia spumigena CCY9414] gi|119465287|gb|EAW46184.1| hypothetical protein N9414_19797 [Nodularia spumigena CCY9414] Length = 442 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 141/452 (31%), Positives = 227/452 (50%), Gaps = 35/452 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V GC+ N D+ M + GY + + AD +++NTC E A ++ L + Sbjct: 9 VSHLGCEKNRIDTEHMLGLLVEAGYSVDTNEELADYVIVNTCSFIEAARQESVRTLVELA 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 VV+ GC+AQ E++L P +VG Y+++ ++ER G++ Sbjct: 69 EANKK---------VVITGCMAQHFQEQLLEELPEAVALVGTGDYHKIVNVIERVEQGEQ 119 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V + S+E + I D R R T A+L + EGCD C FC++PY RG + SR Sbjct: 120 V--KEVSLEPTY----IADETTPRYRTTTEGVAYLRVAEGCDYRCAFCIIPYLRGNQRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRL 263 ++ +V EA +L GV EI L+ Q + GLD K ++LL +L ++ +R+ Sbjct: 174 TIESIVAEAEQLASQGVQEIILISQITTNY---GLDIYGKPKLAELLRALGKVDVPWIRM 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P ++ +I+A + ++PYL LP+Q IL+SMNR II+RI+ Sbjct: 231 HY--AYPTGLTPDVIEAIQETHNVLPYLDLPLQHSHPDILRSMNRPWQGRVNDGIIERIK 288 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P+ + + FIVGFPGET + F + V + + F +SP GTP + Q+ Sbjct: 289 AALPNAVLRTTFIVGFPGETAEHFEHLREFVQRHEFDHVGVFTFSPEEGTPAYKLANQLP 348 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436 ++V ER L+ LQ+ + ++ N +G+I+EVLIE+ E GKL+GR SP + Sbjct: 349 QSVMDERWHKLMALQEPIAGKK---NQQEIGKIVEVLIEQENPETGKLIGRSGRFSPEVD 405 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +G I+ V I LYG++V Sbjct: 406 GQIYVDGEAKLGTIVPVAIHSADTYDLYGQVV 437 >gi|197303727|ref|ZP_03168764.1| hypothetical protein RUMLAC_02456 [Ruminococcus lactaris ATCC 29176] gi|197297247|gb|EDY31810.1| hypothetical protein RUMLAC_02456 [Ruminococcus lactaris ATCC 29176] Length = 438 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 136/439 (30%), Positives = 243/439 (55%), Gaps = 29/439 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M++M GYE V + AD+ V+NTC + A K L R R + Sbjct: 11 GCKVNAYETEAMQEMLEKAGYEIVPFKEGADVYVINTCTVTNIADRKSRQMLHRARKM-- 68 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-----RARFGK 147 D +VV AGC QA+ ++ +++V+G L +L+ RA G+ Sbjct: 69 -----NPDAVVVAAGCYVQAQEGKV---DSCIDIVLGNNKKKDLIRILDEYRKSRAESGR 120 Query: 148 -RVVDTDYSVED-----KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + + D +ED ++E L++ G + + A++ +Q+GC++FCT+C++PY RG Sbjct: 121 EKEILPDVELEDIGHTKEYESLNLTRPGDHTR----AYIKVQDGCNQFCTYCIIPYARGR 176 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 SRS+ V +E R L +NG E+ L G +++++ G D E+ DL+ ++ +I+G+ Sbjct: 177 VRSRSMEDVTEEVRTLAENGYKEVVLTGIHLSSY-GIDFDKERHLL-DLIRAVHQIEGIE 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R + P +++ +A L + P+ HL +QSG + LK MNRR+T+ EY + Sbjct: 235 RIRLGSLEPGIITEEFAEAISKLPKMCPHFHLSLQSGCNATLKRMNRRYTSEEYAERCGI 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R + A+++D IVGFPGET+++F A+ + VD I + + FKYS R GT + M +Q Sbjct: 295 LRKYFENPALTTDVIVGFPGETEEEFEASRNFVDSIDFYETHIFKYSRREGTKAAVMPDQ 354 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL--VGRSPWLQSVV 439 V E K+ R + + +++ ++ ++ +G+ +EVL+E+ + G++ G + + Sbjct: 355 VSEGKKSARSAEMIEMGEQKRRAYEESFIGKEVEVLVEEEIERNGEIFWTGHTKEYIKIA 414 Query: 440 LNSKNHNIGDIIKVRITDV 458 L S+ + I+KV+I D Sbjct: 415 LQSRENLRNCIVKVQIEDA 433 >gi|6841556|gb|AAF29131.1|AF161516_1 HSPC167 [Homo sapiens] Length = 586 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 150/501 (29%), Positives = 244/501 (48%), Gaps = 66/501 (13%) Query: 17 IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 ++D+ + QR ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREK Sbjct: 91 MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A + +++ L +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210 Query: 136 LPE-LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 LP L +R K G +AF++I GCD C++C+ Sbjct: 211 LPGCWLMLSRASKLPTCCSLWTRPMLMSCQSRQGA----SATSAFVSIMRGCDNMCSYCI 266 Query: 195 V------------PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR------ 236 V P++RG E + G+ E+TLLGQNVN++R Sbjct: 267 VLSPGAGRGVGLLPHSRGSE-------------EAFLAGLKEVTLLGQNVNSFRDNSEVQ 313 Query: 237 ---------GKGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281 +G T F+ LL +S + +R+R+T+ HP+D D +++ Sbjct: 314 FNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLI 373 Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341 + D + +HLP QSGS R+L++M R ++ Y +++ IR P +++SSDFI GF G Sbjct: 374 HERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCG 433 Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLRE 400 ET++D T+ L+ ++ Y F F YS R T + L + V E VK RL L RE Sbjct: 434 ETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFRE 493 Query: 401 QQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPW-LQSVVLNSKNHNI----------- 447 + N VG VL+E K L GR+ L+ + +++ ++ Sbjct: 494 EASKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQP 553 Query: 448 GDIIKVRITDVKISTLYGELV 468 GD + V+IT TL G ++ Sbjct: 554 GDYVLVKITSASSQTLRGHVL 574 >gi|331083857|ref|ZP_08332966.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae bacterium 6_1_63FAA] gi|330403282|gb|EGG82842.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae bacterium 6_1_63FAA] Length = 446 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 139/445 (31%), Positives = 226/445 (50%), Gaps = 20/445 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M M GY N +A++IV+NTC A E+ + + L Sbjct: 8 SLGCDKNLADSEEMLGMLVENGYTLTNDETEAEIIVVNTCAFIHDAKEESINSI-----L 62 Query: 91 KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + +R K G L +++V GC+AQ EEI++ P V+ V+G ++ + + L++ G+R Sbjct: 63 EMARYKTEGVLKVLLVTGCLAQRYKEEIIKEIPEVDAVLGTTSFGDIIKALDKVFEGERY 122 Query: 150 VD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ D + + + ++ G G +L I EGCDK CT+C++P RG S + Sbjct: 123 LEFKDINALTEISKKRVLTTG-----GYYGYLKIAEGCDKRCTYCIIPKLRGNYRSIPME 177 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 Q++ +A L GV E+ L+ Q + GK + G+KC LL L +I G+ +R Sbjct: 178 QLISQAEYLAGQGVRELILVAQETTVY-GKDIYGKKC-LHKLLKELCKIPGIQWIRILYC 235 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ LI+ + + YL LP+Q SD+ILK M RR T E I+ +R PD Sbjct: 236 YPEEIYPELIQTMKEEKKICHYLDLPIQHCSDKILKKMGRRTTKQELIDIVTLLRKEIPD 295 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I + + I GFPGET++D M+ +D + + + F YS TP +NM Q+ E VK Sbjct: 296 IILRTTLITGFPGETEEDHEELMEFIDTMEFDRLGVFTYSAEEDTPAANMPNQIAEEVKQ 355 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKN 444 +R L + +E + + +G +EV+IE ++ VGR+ P + + + + Sbjct: 356 DRQAELMELQQEISIDKGNDKIGTCVEVMIEGKVADENAYVGRTYGDAPNVDGYIFINTD 415 Query: 445 HNI--GDIIKVRITDVKISTLYGEL 467 + GD +V +T L GEL Sbjct: 416 TELMSGDFARVHVTGALEYDLIGEL 440 >gi|300813542|ref|ZP_07093873.1| MiaB-like protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512290|gb|EFK39459.1| MiaB-like protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 431 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 138/456 (30%), Positives = 247/456 (54%), Gaps = 35/456 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVY 81 + + F + + GC++N Y+S M ++F GY +V N D AD+ ++NTC + + K Sbjct: 1 MAKTFSILTLGCKVNQYESEAMAELFEKNGYIQVDNDTDVADVYIVNTCTVTNLSDRKSR 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 ++ R + +E D V V GC AQ +E+ + V+VV+G ++ +L+E Sbjct: 61 QYIRRAK-------RENPDSTVAVVGCYAQVAPKEV-EKIEGVDVVIGTSERSKIVDLIE 112 Query: 142 RARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 A+ + ++ D + F+ + I D +++ R +++ +Q+GC+++CT+C++PY R Sbjct: 113 EAKEEDKKINIVRDIKKDRDFQFIKI-DENFHKTR---SYMKVQDGCNRYCTYCIIPYAR 168 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G SR + V EA +L + G EI L G +V ++ G+D DL+ +++E+ G Sbjct: 169 GTIRSRRIGDCVREAIRLANAGYKEIILTGIHVGSY---GVDLGPVRLIDLIEAIAEVDG 225 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R ++ P +S+ ++ L + HL +QSGS+++LK MNR + E+ + Sbjct: 226 IERIRLSSVEPNIISEDFMRRAIACSKLCDHFHLSLQSGSNKVLKDMNRHYNREEFIEKT 285 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 I+ P +++D IVGFPGE+D+DF +M +V ++ +++ FKYS R TP ++ Sbjct: 286 KIIKKYMPYAGLTTDIIVGFPGESDEDFEDSMSIVREVEFSKVHVFKYSKRKNTPAADRA 345 Query: 380 EQVDENVK---AERLLCLQ----KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 +QVD N+K +E L+ LQ KK RE+ + + ++VL E+ ++G G + Sbjct: 346 DQVDGNIKIKRSEELIKLQDQYLKKFREKNMP-------RTLKVLFEEF--DQGYYFGYT 396 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + S I I+ VR+ D + L GELV Sbjct: 397 DNYIRVKVKSDKDLINKILDVRLVDNEEVAL-GELV 431 >gi|293402175|ref|ZP_06646313.1| 2-methylthioadenine synthetase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304282|gb|EFE45533.1| 2-methylthioadenine synthetase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 433 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 135/443 (30%), Positives = 217/443 (48%), Gaps = 26/443 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS +M M S +E V +A+ I++NTC A E+ + + ++ Sbjct: 7 SLGCSKNLVDSEKMMGMLKSGHHELVKDAQEAEAIIINTCGFINSAKEEAINTIFKMAEY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K K+ ++V GC+AQ E + P ++ V+ + Y L E+L GK +V Sbjct: 67 KKQNCKK-----LIVVGCLAQRYKETLEAEIPEIDAVISIREYPHLHEILHSLLDGKELV 121 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 S ER+ + TA+L I EGC CT+C +P RG ++ + Q+ Sbjct: 122 SYGKS-----ERMV-------SSKPWTAYLKIAEGCSNRCTYCAIPLIRGDNVTFPMEQL 169 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V EA++L GV E+ L+ Q+ + G L G++ + +LL L EI G +R +P Sbjct: 170 VQEAKELAQRGVKELVLIAQDTTKY-GVDLYGKR-SLLELLQKLHEIDGFHWIRILYMYP 227 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++ + LI+ L ++PY +P+Q ++R+L +MNRR T E +I +IR D Sbjct: 228 DEIDEDLIEGMAKLPKVLPYFDIPMQHANNRMLAAMNRRGTKEEVLALIKKIRKTYADPT 287 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 + + FIVGFP ET +DF M V+ + + + +F YSP TP M + V E K R Sbjct: 288 LRTTFIVGFPSETQEDFDELMQFVEDVHWDRMGAFTYSPEEDTPAFEMEQSVAEEEKQRR 347 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS------VVLNSKN 444 L L ++ E ++ +G ++EVL+E GK GR V+ SK Sbjct: 348 LAILMQRQEEISLANQQKRIGTVMEVLVEAQDGLTGKYRGRGANSAPDEVDGMVIFTSKQ 407 Query: 445 H-NIGDIIKVRITDVKISTLYGE 466 +G ++V+IT+ + GE Sbjct: 408 PLALGSFVQVKITEALPHDVIGE 430 >gi|295695882|ref|YP_003589120.1| MiaB-like tRNA modifying enzyme [Bacillus tusciae DSM 2912] gi|295411484|gb|ADG05976.1| MiaB-like tRNA modifying enzyme [Bacillus tusciae DSM 2912] Length = 473 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 142/453 (31%), Positives = 234/453 (51%), Gaps = 26/453 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + GC++N YD+ + +F + GY V D+AD+ V+NTC + K Sbjct: 4 RVAFHTLGCKVNAYDTEAIRHLFRNAGYAEVPFEDEADVYVINTCSVTNVGDRKSRQ--- 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + I+ + +VV GC AQ E+ P V++V+G ++ E +E+ R Sbjct: 61 ----IIRRAIRRSPEATIVVTGCYAQVAPGEVAA-IPGVDLVMGNDRRGQIVEWVEKVRE 115 Query: 146 GKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +R VV V D FE L V +R R A L IQ+GC+ FC+FC++P++RG Sbjct: 116 ERRPYQVVANVRRVRD-FEELD-VPAFADRAR---ATLKIQDGCNNFCSFCIIPFSRGFV 170 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLV 261 SR V+ +AR+L + G EI L G + G G D E T +DLL L E++ V Sbjct: 171 RSRKPENVLHQARRLAEAGYREIVLTGIHTG---GYGADLEGYTLADLLVDLERELEDSV 227 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R ++ + + ++ + +LH+P+QSG D +L+ M RR+T EY + I R Sbjct: 228 RIRISSIEASQIDERMLDVLRRSKQICRHLHIPLQSGDDEVLRRMRRRYTVAEYAEKIHR 287 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR V P++A+++D IVGFPGET + F T L++++ ++Q F YSPR GT + Sbjct: 288 IREVLPEVAVTTDVIVGFPGETKEQFDNTRRLIEELKFSQLHVFPYSPRRGTAAARYPNP 347 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLV--GRSPWL 435 V VK ER+ L + ++ +++ VG+++ V++E E G ++ G + Sbjct: 348 VPAEVKEERVRQLVRLSKDLTLAYASRFVGRVLPVVVESSVEDRRAEDGNMLFTGHADNY 407 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V + +G +++VR+ D +G +V Sbjct: 408 LEMVFAADPSMVGQLVEVRLEDPGAERSFGSVV 440 >gi|325959667|ref|YP_004291133.1| RNA modification enzyme, MiaB family [Methanobacterium sp. AL-21] gi|325331099|gb|ADZ10161.1| RNA modification enzyme, MiaB family [Methanobacterium sp. AL-21] Length = 425 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 142/446 (31%), Positives = 228/446 (51%), Gaps = 28/446 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ + GC N DS M + E V++ +DAD I++NTC+++ +KV L Sbjct: 2 KVYIDTVGCTFNQADSQIMAGILKENRVELVDTPEDADTIIMNTCYVKHPTEQKV---LT 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +I+ ++ ++ + ++++GC+ + + E++ +P + + GP E++ Sbjct: 59 KIKKMQ----EQYPESKLLISGCMVEIDPEKLADAAPEASWI-GPHKIKSTYEIVNSVHE 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G V +T +S E K + R + + I EGCD FCT+C + RG S Sbjct: 114 GNIVRETGFSSEPKVGLPKV------RTNPIIHIIQICEGCDGFCTYCCTRFARGRIQSY 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 S + EA + + G EI L Q+ A+ G D GE + +DL+ +S+I G +LR Sbjct: 168 SSEMIKKEAEQAVTEGCKEIQLTAQDTAAY---GRDTGE--SLADLISMISDIDGKFKLR 222 Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 HP+ + D +IKA +LHLP+QSGSD +L MNR HT EY+ I+ R Sbjct: 223 VGMMHPKSIMNQVDPIIKAFKKGKCY-KFLHLPIQSGSDTVLHDMNRCHTVDEYKTIVSR 281 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R PDI+IS+D IVG+P ETDDDF+AT++L+ ++ KY R GT S+ LE+ Sbjct: 282 FREEIPDISISTDIIVGYPTETDDDFKATLNLIKELEPDFLHISKYMHRPGT-TSSQLEE 340 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 ++ ER L E + N +G +L+ G+ KG VGRS ++V++ Sbjct: 341 IEHETMKERSKALNDLKMEIAMKKNSMMIGSKQTILVTNKGR-KGGYVGRSDGYKTVIIE 399 Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467 + IG + V I D K + L EL Sbjct: 400 AA--EIGSFVDVVIKDAKPTYLLAEL 423 >gi|238065381|sp|Q2IM41|RIMO_ANADE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO Length = 470 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 141/454 (31%), Positives = 231/454 (50%), Gaps = 26/454 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++ + GC N DS M GY V A++IV+NTC E A E+ + Sbjct: 4 RVYMHTLGCPKNRVDSEVMLGTLAEAGYRLVQDPAKAEVIVVNTCGFIESAKEESVEAIV 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + + K +EG +VV GC+ Q EE+ R P V+ +G Y + ++ A+ Sbjct: 64 ELADQK----REGRCRKLVVTGCLVQRHAEELARELPEVDHFLGTGAYQDVARIVSDAQA 119 Query: 146 GKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + VV D D+ R+ N TA+L I EGCD C FC++P RG + S Sbjct: 120 KRLVVPDPDFVHSAATPRV-------NSLPSHTAYLKIAEGCDNACAFCIIPKLRGGQRS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + +V EA L G E++L+ Q++ A+ G+ L G K LL L+++ GL +R Sbjct: 173 RPIDDLVAEAAALAAQGTVELSLVAQDLTAY-GQDLPG-KVRLHHLLPELAKVDGLRWIR 230 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++PRD+ D L+ A D ++ YL +P+Q SDR+L++M R + R ++ R+R+ Sbjct: 231 LHYAYPRDVPDALVAAMADEPKIVKYLDMPLQHSSDRLLRAMKRGRDSVFLRDLLARLRA 290 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P +A+ + IVG PGET+ DF + V++ + + F+YSP GTP + M +QV + Sbjct: 291 RIPGLALRTALIVGLPGETEADFEDLLRFVEEQRFERLGVFEYSPEEGTPAAEMADQVPD 350 Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ 436 +K E R++ +Q+ + + A +G+ +EVL+E +E G+ ++P + Sbjct: 351 ALKRERRDRIMAVQQGISR---AHQQAMIGRRLEVLVEGRAEETEHLLAGRHAQQAPEID 407 Query: 437 SVV-LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + +N G+I+ V ITD L G +V Sbjct: 408 GLTYVNDGVAYPGEIVTVEITDAAEYDLVGRVVA 441 >gi|86156522|ref|YP_463307.1| hypothetical protein Adeh_0093 [Anaeromyxobacter dehalogenans 2CP-C] gi|85773033|gb|ABC79870.1| SSU ribosomal protein S12P methylthiotransferase [Anaeromyxobacter dehalogenans 2CP-C] Length = 483 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 141/454 (31%), Positives = 231/454 (50%), Gaps = 26/454 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++ + GC N DS M GY V A++IV+NTC E A E+ + Sbjct: 17 RVYMHTLGCPKNRVDSEVMLGTLAEAGYRLVQDPAKAEVIVVNTCGFIESAKEESVEAIV 76 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + + K +EG +VV GC+ Q EE+ R P V+ +G Y + ++ A+ Sbjct: 77 ELADQK----REGRCRKLVVTGCLVQRHAEELARELPEVDHFLGTGAYQDVARIVSDAQA 132 Query: 146 GKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + VV D D+ R+ N TA+L I EGCD C FC++P RG + S Sbjct: 133 KRLVVPDPDFVHSAATPRV-------NSLPSHTAYLKIAEGCDNACAFCIIPKLRGGQRS 185 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + +V EA L G E++L+ Q++ A+ G+ L G K LL L+++ GL +R Sbjct: 186 RPIDDLVAEAAALAAQGTVELSLVAQDLTAY-GQDLPG-KVRLHHLLPELAKVDGLRWIR 243 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++PRD+ D L+ A D ++ YL +P+Q SDR+L++M R + R ++ R+R+ Sbjct: 244 LHYAYPRDVPDALVAAMADEPKIVKYLDMPLQHSSDRLLRAMKRGRDSVFLRDLLARLRA 303 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P +A+ + IVG PGET+ DF + V++ + + F+YSP GTP + M +QV + Sbjct: 304 RIPGLALRTALIVGLPGETEADFEDLLRFVEEQRFERLGVFEYSPEEGTPAAEMADQVPD 363 Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ 436 +K E R++ +Q+ + + A +G+ +EVL+E +E G+ ++P + Sbjct: 364 ALKRERRDRIMAVQQGISR---AHQQAMIGRRLEVLVEGRAEETEHLLAGRHAQQAPEID 420 Query: 437 SVV-LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + +N G+I+ V ITD L G +V Sbjct: 421 GLTYVNDGVAYPGEIVTVEITDAAEYDLVGRVVA 454 >gi|219854162|ref|YP_002471284.1| hypothetical protein CKR_0819 [Clostridium kluyveri NBRC 12016] gi|219567886|dbj|BAH05870.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 463 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 132/448 (29%), Positives = 247/448 (55%), Gaps = 19/448 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + + GC++N Y++ M + F + YE VN + AD+ V+NTC + +K + Sbjct: 26 KRVAMATLGCRVNQYETEAMAEKFIEKEYELVNFEEYADVYVINTCTVTNMGDKKSRQMI 85 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143 R + ++ ++ V GC +Q +E+ + + V+VV+G + + + +A Sbjct: 86 HRAK-------RKNSSAVIAVVGCYSQIAPDEVSKING-VDVVLGTKNKGDILHFVNKAF 137 Query: 144 RFGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + ++++ + +++K FE L+I + NR R AFL IQ+GC++FC++C++P+ RG Sbjct: 138 KDEEKIIKVSHVLKNKTFEDLNISEYQ-NRTR---AFLKIQDGCNRFCSYCLIPFARGPV 193 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S+ +++ E +KL N EI L G ++ ++ G + G +L + +IKG+ R Sbjct: 194 CSKEPDKIIKEVKKLQVNNFKEIILSGIHIASY-GVDISGS-WNLIKILEEIDKIKGIDR 251 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R + P+ ++ +I L L P+ HL +QSG D L MNR++T EY +I+ ++ Sbjct: 252 VRIGSIDPKFFTEDIINRMASLTKLCPHFHLSLQSGCDSTLNRMNRKYTTTEYEKIVYKL 311 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R D++I++D IVGFPGET+++F T D ++KI ++ FKYS R GT ++M EQ+ Sbjct: 312 RDSIKDVSITTDIIVGFPGETEEEFYKTYDFLNKIELSKIHVFKYSRREGTKAADMKEQI 371 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP-WLQSVVL 440 D +K ER + K + F + +G ++VL E K +K G +P +++ + Sbjct: 372 DGKIKDERSSKIIKLNERLENKFMNRFLGNNMDVLYEQKVSGDKIYYEGYTPNYIKVIAE 431 Query: 441 NSKNHNI-GDIIKVRITDVKISTLYGEL 467 +++ N+ G ++ ++ VK + G + Sbjct: 432 SAEGENLEGKVLNTKLESVKEGYILGRI 459 >gi|210622624|ref|ZP_03293284.1| hypothetical protein CLOHIR_01232 [Clostridium hiranonis DSM 13275] gi|210154125|gb|EEA85131.1| hypothetical protein CLOHIR_01232 [Clostridium hiranonis DSM 13275] Length = 445 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 139/456 (30%), Positives = 238/456 (52%), Gaps = 31/456 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84 + ++S GC N+ D+ M + +GYE V +AD+I++NTC IR+ E + + + Sbjct: 3 KIALESLGCSKNLMDAEIMTGILKEKGYEFVEEFAEADIIIVNTCGFIRDAKQESIDTIV 62 Query: 85 GRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + S++KE G L ++V GC+AQ +E+L P ++ +VG + + E+++R Sbjct: 63 ------ELSQLKEFGKLKYLIVTGCLAQRYADELLEEIPEIDAIVGTGNFMNISEIIDRL 116 Query: 144 RFGKRVVDT---DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 K V + +++ ++ R Y A+L I EGC CT+C++P RG Sbjct: 117 ESEKNVTEIGNIEFAFDETLPR-------YVSTPEHMAYLKIGEGCSNHCTYCIIPKLRG 169 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR + +V+EA+ L GV E+ ++ Q+ + G+ L GE ++LL L+ I+G+ Sbjct: 170 KYRSRKIEDIVEEAKTLAAEGVKELVVIAQDTTRY-GEDLYGE-AKLAELLEELAGIEGI 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R S+P +++ LI D + Y +P+Q S+R+LK MNRR + + R ++ Sbjct: 228 KWIRIMYSYPESITEKLIDVIAAHDNICSYFDMPIQHASNRVLKRMNRRTSKEDIRNKVE 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IRS PD I + IVGFPGET++D ++ + +I + + +F YS TP M Sbjct: 288 MIRSKIPDAVIRTTVIVGFPGETEEDLEELIEFMKEIKFDRLGAFAYSREEDTPADRMDG 347 Query: 381 QVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPW 434 +DE +K E R++ +Q+ + E+ N ++ EVLI + G G+ G + Sbjct: 348 HMDEEIKEERRDRVMMVQQAISEE---INQKREDKVFEVLIEEEAEEGVYVGRTQGDAEE 404 Query: 435 LQSVV-LNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + SVV +NS IG + V IT+ L G++V Sbjct: 405 IDSVVYVNSDEELEIGSFVNVYITEAMEYDLIGDVV 440 >gi|218133712|ref|ZP_03462516.1| hypothetical protein BACPEC_01581 [Bacteroides pectinophilus ATCC 43243] gi|217991087|gb|EEC57093.1| hypothetical protein BACPEC_01581 [Bacteroides pectinophilus ATCC 43243] Length = 447 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 140/447 (31%), Positives = 223/447 (49%), Gaps = 24/447 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N+ D+ M S+GYE + ++AD +V+NTC I + E V + L Sbjct: 7 SLGCDKNLVDTEMMLGQLHSRGYEFTDDENEADAVVVNTCCFIHDAKQESVDTLLEMAEL 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR----LPELLERARF 145 KN R + ++ GC+AQ +EI+ P V+ VVG Y + L EL+ + Sbjct: 67 KKNGRCR-----FLIACGCLAQRYRQEIIDEIPEVDAVVGTSAYDKIADTLDELVNKQGD 121 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G + + +R + GGY +L I EGCDK CT+C++P RG S Sbjct: 122 GINCFEDINRLPQTHDRRIVTTGGYYE------YLKIAEGCDKCCTYCIIPKVRGSYRSV 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +++ +A L + GV E+ L+ Q + + G L GEK + LL+ L+ I G+ +R Sbjct: 176 PMDELIKQAEDLAEQGVKELILVAQETSLY-GTDLYGEK-SLHRLLHELAAIDGIEWIRI 233 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P ++ D LI+A + YL LP+Q +D ILK M RR T + I+ ++RS Sbjct: 234 LYCYPEEIDDTLIQAIKSEPKVCHYLDLPIQHANDAILKRMGRRTTKQDLIDIVKKLRSE 293 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDI + + I GFPGET + +D +D++ + + +F YS TP + Q+DE+ Sbjct: 294 IPDICLRTTLITGFPGETKEQHEEVLDFIDELEFDRLGAFTYSAEEDTPAAGFDNQIDED 353 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441 VKA R + + +E + VG+ ++V+IE ++ VGR+ P + V Sbjct: 354 VKAARRDAVMELQQEISADRSAEVVGRTLKVMIEGKLADEDVYVGRTYRDAPNVDGYVFV 413 Query: 442 SKNHNI--GDIIKVRITDVKISTLYGE 466 + + + GD I V+IT L GE Sbjct: 414 NTDAQLMSGDFIPVKITASDNYDLIGE 440 >gi|16331757|ref|NP_442485.1| hypothetical protein slr0082 [Synechocystis sp. PCC 6803] gi|2501537|sp|Q55803|RIMO_SYNY3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|1001718|dbj|BAA10555.1| slr0082 [Synechocystis sp. PCC 6803] Length = 443 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 135/449 (30%), Positives = 222/449 (49%), Gaps = 35/449 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC+ N DS M + GY+ + + AD +++NTC + A ++ L + Sbjct: 9 INHLGCEKNRIDSEHMLGLLVEAGYQVDANEELADYVIVNTCSFIQDARQESVRTLVELA 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 K +V++GC+AQ E++L P VVG Y + +++ R G+R Sbjct: 69 EAKKK---------IVISGCLAQHFQEQLLEEIPEAVAVVGTGDYQNIVDIIRRTEQGQR 119 Query: 149 V----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V + + ++ R Y A+L + EGCD C FC++P RG + S Sbjct: 120 VKAISPNPSFIADENLPR-------YRTTNEAIAYLRVAEGCDYRCAFCIIPQLRGKQRS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263 R + +V EA +L GV E+ L+ Q + G L GE ++LL +L ++ +R+ Sbjct: 173 RPIESIVAEAEQLASQGVKELILISQITTNY-GLDLYGEP-KLAELLQALGKVDIPWIRI 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P ++ +I+A D ++PYL LP+Q IL++MNR II R++ Sbjct: 231 HY--AYPTGLTPKVIEAIRDTPNVLPYLDLPLQHSHPDILRAMNRPWQGQVNDDIITRLK 288 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PD + + FIVGFPGET++ F +D V + + F +SP GT ++ V Sbjct: 289 TALPDAVLRTTFIVGFPGETEEHFGHLLDFVQRHQFDHVGVFTFSPEEGTAAFDLPNAVP 348 Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436 E V + +RL+ LQ+ + Q+ N AC+GQ ++VLIE+ G+ +GRS P + Sbjct: 349 EEVMGDRRDRLMALQQPISAQK---NAACLGQTLDVLIEQENPSTGEFIGRSTRFAPEVD 405 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYG 465 +V N N+ +I+ V IT LYG Sbjct: 406 GLVYVKGNANLNEIVPVVITATDDYDLYG 434 >gi|210612715|ref|ZP_03289430.1| hypothetical protein CLONEX_01632 [Clostridium nexile DSM 1787] gi|210151408|gb|EEA82416.1| hypothetical protein CLONEX_01632 [Clostridium nexile DSM 1787] Length = 298 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 115/279 (41%), Positives = 168/279 (60%), Gaps = 3/279 (1%) Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249 C++C+VPY RG E SR+ ++ E L+ +GV E+ LLGQNVN++ GK LD + TF++ Sbjct: 21 CSYCIVPYVRGRERSRNPKDIIREIEALVADGVMEVMLLGQNVNSY-GKNLD-DPMTFAE 78 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL + +I+GL R+R+ TSHP+D+SD LI+ + +LHLPVQSGS ILK MNR Sbjct: 79 LLQEIEKIEGLERIRFMTSHPKDLSDELIEVMRHSKKICKHLHLPVQSGSTEILKKMNRH 138 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 +T +Y +++ +I+ PDI++++D IVGFPGET++DF TMD+V K+ Y AF+F YS Sbjct: 139 YTKEQYLELVRKIKEAVPDISLTTDIIVGFPGETEEDFLETMDVVKKVRYDSAFTFIYSK 198 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 R GTP + M EQ+ ++V R L K+++E + G VL+E LV Sbjct: 199 RTGTPAAIMEEQIPDDVVKGRFDRLLKEVQEISAAVCSVHEGTTQPVLVESMNDHDDSLV 258 Query: 430 -GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 GR V IG I+ V + + K GE+ Sbjct: 259 TGRLSNNILVHFKGDESLIGKIVDVNLKECKGFYYLGEM 297 >gi|291525036|emb|CBK90623.1| MiaB-like tRNA modifying enzyme [Eubacterium rectale DSM 17629] Length = 434 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 130/395 (32%), Positives = 210/395 (53%), Gaps = 26/395 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+ + GYE V AD+ V+NTC + A K L + + Sbjct: 10 GCKVNAYETEAMQHLLEEAGYEIVPFTQKADVYVINTCSVTNMADRKSRQMLHKAK---- 65 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 K D +VV AGC Q +E+L V++V+G + L LLE V DT Sbjct: 66 ---KNNPDSIVVAAGCYVQTSEKEVLNDLS-VDIVIGNDRKHDLVRLLEEYSLDS-VNDT 120 Query: 153 DYSVED---KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + D FE L I K AF+ +Q+GC++FC++C++PY RG SR Sbjct: 121 VDDINDGKHDFEELFID----QTKEHTRAFIKVQDGCNQFCSYCIIPYARGRVRSRRFEN 176 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTS 268 V+ E +L NG E+ L G +++++ G+D E+ T +L+ +++ +KG+ R+R + Sbjct: 177 VIAEVERLAANGFKEVVLTGIHLSSY---GVDFEEATGLLELIQAVNAVKGIERIRLGSL 233 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P+ +++ LD + P+ HL +QSG D LK MNR++T EY + + +R Sbjct: 234 EPKIVTEHFASELSKLDKICPHFHLSLQSGCDETLKRMNRKYTTKEYERGCELLRKYFVH 293 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 AI++D IVGFPGET+++F T ++ I + + FKYS R GT + M +Q+DE +KA Sbjct: 294 PAITTDVIVGFPGETEEEFEQTKAYLEHIHFYEMHIFKYSKRKGTRAAVMPDQIDEQIKA 353 Query: 389 ---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 E+L+ L + ++ F +G+ EVL E+ Sbjct: 354 ARSEKLIALGHDMSKE---FRKFYIGKNEEVLFEE 385 >gi|310826527|ref|YP_003958884.1| 2-methylthioadenine synthetase [Eubacterium limosum KIST612] gi|308738261|gb|ADO35921.1| 2-methylthioadenine synthetase [Eubacterium limosum KIST612] Length = 435 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 129/430 (30%), Positives = 227/430 (52%), Gaps = 23/430 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG--RIR 88 + GC++N YD+ M ++F GY V + AD+ V+NTC + + LG + R Sbjct: 10 TLGCKVNSYDTEAMMEIFEKAGYRIVGFAEYADVYVVNTCTV---------THLGDRKSR 60 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 N+ + D ++V GC Q +E+ + V++++G + + +E + K Sbjct: 61 NMMRKARRTNPDAVIVAVGCYVQVAPDEV-QAIEEVDLIIGTKNRADIVADIEAYQKDKT 119 Query: 149 VVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + +D E +E L+I + K AFL +QEGC++FCT+C+VP+ RG SR Sbjct: 120 QNNFVSDIMREHHYEDLNITE----TKGKTRAFLKVQEGCNQFCTYCIVPFARGPVRSRP 175 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265 + V+ E +++ +G E+ L G ++ ++ G+D G+ L+ ++ +++G+ R+R Sbjct: 176 VDAVLSEVKRVAAHGYAEVVLTGIHIASY---GVDLGDGVDLLSLIRAVDKVEGVKRIRL 232 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 + P +++ ++ ++ P+ HL +QSG D +L M R++T +Y +I+ R+R Sbjct: 233 GSLEPLLLTEEFVQGLSEVRAFCPHFHLSLQSGCDTVLSRMGRKYTTAQYAEIVKRVRRA 292 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 AI++D +VGFPGET+++F AT+ V++I + Q FKYS R GT QV E Sbjct: 293 FDYPAITTDIMVGFPGETEEEFEATLAFVEQIHFYQVHVFKYSRRKGTKADAFQGQVPEE 352 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 +K ER L ++ R + F A G+ + VL E+ KE+G G + VVL + Sbjct: 353 IKTERSHRLTQRARACEQDFLKANAGRTVPVLYER-AKEEGVYEGHTDNYIPVVLKTIEK 411 Query: 446 NIGDIIKVRI 455 G II+ + Sbjct: 412 MNGKIIETEL 421 >gi|153854410|ref|ZP_01995688.1| hypothetical protein DORLON_01683 [Dorea longicatena DSM 13814] gi|149752936|gb|EDM62867.1| hypothetical protein DORLON_01683 [Dorea longicatena DSM 13814] Length = 442 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 130/453 (28%), Positives = 237/453 (52%), Gaps = 38/453 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + + GC++N Y++ M+++ GYE V + AD+ ++NTC + A K L Sbjct: 2 KKVALHNLGCKVNAYETEAMQELLEKHGYEIVPFQEGADVYIINTCTVTNMADRKSRQML 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--- 141 + R + D +VV GC QA+ ++I +++VVG + E+LE Sbjct: 62 HKARKM-------NPDSIVVACGCYVQAKKDDI---PEGIDIVVGNNKKQNIVEILENYE 111 Query: 142 --RARFGKRVVDT-------------DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186 + + G+R D + E +E L + + + A++ +Q+GC Sbjct: 112 KEKNQDGQRETSDEQEKETETYQEILDINHEKVYEDLHLSTAAEHTR----AYIKVQDGC 167 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246 ++FC++C++P+ RG SRS V+DE + L NG E+ L G +++++ G+D + Sbjct: 168 NQFCSYCIIPFARGRVRSRSRDSVLDEVKTLSANGYKEVVLTGIHLSSY---GIDCDDNL 224 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 S L+ ++ E++G+ R+R + PR +++ + L + P+ HL +QSG + LK M Sbjct: 225 LS-LILAIHEVEGIERIRLGSLEPRIITEEFAQTIAKLPKMCPHFHLSLQSGCNATLKRM 283 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 NRR+TA EY + +R + A+++D IVGFPGET+++F + VDK+ + + FK Sbjct: 284 NRRYTAEEYYEKCQLLRKYFDNPALTTDVIVGFPGETEEEFAESKAFVDKVDFYETHIFK 343 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 YS R GT + M +QV + +KA R L + R++Q + + +G EVLIE+ G Sbjct: 344 YSRREGTKAAAMKDQVPDQIKAARSAELLELNRKKQAVYEERLLGTTQEVLIEEKIVRDG 403 Query: 427 K--LVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457 + +G + + + + N+ I ++ V I + Sbjct: 404 EELQIGHTKEYVKIGVKNPNNLINQLVNVEIEN 436 >gi|328949917|ref|YP_004367252.1| Ribosomal protein S12 methylthiotransferase rimO [Marinithermus hydrothermalis DSM 14884] gi|328450241|gb|AEB11142.1| Ribosomal protein S12 methylthiotransferase rimO [Marinithermus hydrothermalis DSM 14884] Length = 451 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 145/460 (31%), Positives = 231/460 (50%), Gaps = 38/460 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P + S GC + DS ++ ++GYE + ++ADL+V+NTC A E+ Sbjct: 1 MPGKIGFVSLGCPKALVDSEQILTRLRAEGYEVAPTYEEADLVVVNTCGFITPAVEESLD 60 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G ++E G VVV GC+ A E I R P V V GP R+ E + R Sbjct: 61 AIGEA-------LRENGK--VVVTGCLG-ARPEVIQARHPEVLEVTGPGEVDRVLEAVHR 110 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 V+ D E+ F ++V G A+L I EGC+ C+FC++P RG + Sbjct: 111 ------VLPPD---ENPF--TALVPRGVKLTPRHYAYLKIAEGCNHRCSFCIIPKLRGRQ 159 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254 SR +V+ EA +L+ G E+ ++ Q+ +A+ R G + +DL+ L Sbjct: 160 RSRDAGEVLYEAYRLVSTGTKELLVIAQDTSAYGVDLQHRTSEFQGRAVRAHLTDLVTEL 219 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 +E+ VRL Y +P + A G L +PYL +P+Q S RIL++M R Sbjct: 220 AEMGAWVRLHYVYPYPHVADLVALMAEGKL---LPYLDVPLQHASPRILRAMRRPGGPEA 276 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + + I R V P++ I S FIVGFPGET+ +F ++ + + + +F YS G Sbjct: 277 HLETIRAWREVCPELTIRSTFIVGFPGETEAEFELLLEFLAEARLDRVGAFTYSEVEGAE 336 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432 + + +V E VKAERL L E + N +GQ++EV+++++G+E G+++GR+ Sbjct: 337 ANALPGRVPEEVKAERLERLMALQAEISLEKNRKKIGQVLEVIVDEYGEEPGQVIGRTKG 396 Query: 433 --PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGELV 468 P + V + IGDII+V++TD LYG+ V Sbjct: 397 DAPGIDGRVYAMTDGTVKIGDIIRVKVTDASTYDLYGDAV 436 >gi|302037249|ref|YP_003797571.1| putative tRNA modifying enzyme, MiaB-like [Candidatus Nitrospira defluvii] gi|300605313|emb|CBK41646.1| putative tRNA modifying enzyme, MiaB-like [Candidatus Nitrospira defluvii] Length = 447 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 127/444 (28%), Positives = 218/444 (49%), Gaps = 14/444 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + + GC+++ ++ + D +GY+ V + DL+VLNTC + E A + Sbjct: 7 RASLHTLGCRLSQSETSMLADTLARRGYQLVEFGKETDLLVLNTCSVTENAEKDC----- 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R ++ V V GC AQ G L++ P ++++VG Q LP+ L Sbjct: 62 --RYAVRKTLRHSPHAFVAVTGCYAQT-GATQLQKVPGIDLIVGTQFKMNLPDYLPAPAK 118 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ + + +R V G A L IQ+GCD C+FC++P+ RG E SR Sbjct: 119 LRKQPEPELRHSRTIDREDFVLPGTAYSDSTRALLKIQDGCDFMCSFCLIPFARGRERSR 178 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + V+ EAR+L +G E+ L G N+ + +GL +LL L + + R+R Sbjct: 179 TAEDVLREARELAAHGYRELVLTGVNIGRYSYQGLG-----LVELLRELESVPDVTRIRI 233 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ P + L++ L YLHLP+QSG + IL++MNRR+ EY +++++ ++ Sbjct: 234 SSIEPTTVPAALLEHMAGSTKLCHYLHLPLQSGDNTILQAMNRRYAVREYEELVEQALAL 293 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD+ + +D +VGFPGE + F T+ V+++ ++ F YS R GT + + +Q+ Sbjct: 294 MPDLGLGTDLMVGFPGEDEQAFANTVMTVERLPFSYFHVFSYSSRPGTAAARLEDQISPA 353 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 V +R L + R + ++F +G + VL E+ G+ G G + V + + Sbjct: 354 VIRQRSKALSELSRTKALAFYQQQIGHTLPVLFEQ-GERDGFRTGTTANFTRVAVAADAV 412 Query: 446 NIGDIIKVRITDVKISTLYGELVV 469 G I +V IT + YG V Sbjct: 413 EAGSIHQVTITGIMDGLAYGRPVA 436 >gi|42525164|ref|NP_970544.1| hypothetical protein Bd3841 [Bdellovibrio bacteriovorus HD100] gi|81615876|sp|Q6MGT1|RIMO_BDEBA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|39577375|emb|CAE81198.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100] Length = 457 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 142/459 (30%), Positives = 234/459 (50%), Gaps = 38/459 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M GYE V D AD +++NTC E + ++ + + +L Sbjct: 15 SLGCPKNLVDSEIMAGTLMKDGYEVVGEADQADTVIVNTCGFIEDSKKESIQRILDMSDL 74 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K +EG VVVAGC+ Q ++++ P ++ VG + + ++L+ + G++ Sbjct: 75 K----QEGKIKKVVVAGCLTQRYKDDLVEGLPEADLFVGSGEFQNIAKILKNSDEGEKQK 130 Query: 151 D----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 Y E+ R+ N + G A+L I EGC K C FC +P RG SRS Sbjct: 131 TFFNLPTYLQEEATPRV-------NSQPGHRAYLKISEGCMKRCAFCAIPLIRGNLQSRS 183 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD------GEKCTFSDLLYSLSEIKGL 260 + +V EA+ L+ GV E+ ++ + + G D K + +LL +L +++GL Sbjct: 184 IDAIVAEAKLLVAGGVKELIIISHDFTDY---GFDIRRKDPTRKESPVELLKALDQVEGL 240 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R +P ++ +++ + ++ Y +P+Q +D++LKSMNR+ T E + Sbjct: 241 QWIRLMYLYPDGITQEMVQVIKNSTKIVKYFDMPLQHVNDQVLKSMNRKMTRDEIETALM 300 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR P+ I + FIVGFPGET + F ++ V + + + FKYSP TPG M Sbjct: 301 NIREHLPEAVIRTQFIVGFPGETQEQFEELLNFVAEQQFDRVGCFKYSPEENTPGGRMEN 360 Query: 381 QVDENVKAER---LLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGR 431 Q+DE K R L+ +Q+ + RE+ F VG+ ++V++E +E +G+ G+ Sbjct: 361 QIDEETKQYRHDALMEVQQNISREKHSDF----VGKTLQVIVEGFSEETDLLLQGRFWGQ 416 Query: 432 SPWLQSVVL-NSKNHNIGDIIKVRITDVKISTLYGELVV 469 +P + VVL N +GD++KV ITD L GE+VV Sbjct: 417 APDIDGVVLINDGQAQVGDMVKVHITDNMEYDLIGEIVV 455 >gi|292670946|ref|ZP_06604372.1| MiaB family RNA modification enzyme [Selenomonas noxia ATCC 43541] gi|292647567|gb|EFF65539.1| MiaB family RNA modification enzyme [Selenomonas noxia ATCC 43541] Length = 442 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 146/440 (33%), Positives = 228/440 (51%), Gaps = 33/440 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRIRN 89 S GC N+ D+ M + G + N +AD++++NTC E A E+ + + LG Sbjct: 7 SLGCAKNLVDTEVMLGIMREHGIDITNEPAEADILIVNTCAFIESAKEESITTVLGMADY 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 ++ R + ++VAGC+ Q G+++L P N ++G + R+ E++E G+R+ Sbjct: 67 KESGRCRS-----LIVAGCLGQRYGQQLLDEIPEANAIIGTGAWSRIMEVIEETLKGRRL 121 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + S +D +I D R R TA++ I EGCD C FC +P RG SR Sbjct: 122 L---ISGKDD----TIYDAKTPRLRTTPNYTAYVKIAEGCDHRCAFCAIPLIRGSFRSRV 174 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265 + VV EA L GV E+ L+ Q+ + GLD EK LL +L++IK + +R Sbjct: 175 MEDVVAEAEHLAAQGVRELVLIAQDSANY---GLDLYEKPMLPALLRALTKIKDIAWIRV 231 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 S+P+ SD LI+ ++ Y+ LP+Q D +L+SMNR T ++I R+R Sbjct: 232 LYSYPKYFSDELIEVFATEPKVVKYVDLPLQHAHDAVLRSMNRPDTREGVEKLIKRLRER 291 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P +AI S FIVGFPGETD ++A V+ + + F YS TP + M ++V E Sbjct: 292 IPGVAIRSTFIVGFPGETDTHYQALRSFVEAQRFDKVGIFTYSEEEDTPAAKMAQKVPEE 351 Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS----PWL-- 435 V ER L+ LQ K+ E+ N + G+ ++VLIE +E+ G +GRS P + Sbjct: 352 VMQERYHDLMSLQSKISEE---INVSLEGKEVDVLIEGRDEEQEGISIGRSYREAPEVDG 408 Query: 436 QSVVLNSKNHNIGDIIKVRI 455 Q + + +GDI +VR+ Sbjct: 409 QIYIESDTESRVGDIARVRL 428 >gi|81301321|ref|YP_401529.1| hypothetical protein Synpcc7942_2512 [Synechococcus elongatus PCC 7942] gi|81323650|sp|Q935Y2|RIMO_SYNE7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|15620542|gb|AAL03926.1|U30252_14 unknown [Synechococcus elongatus PCC 7942] gi|81170202|gb|ABB58542.1| Protein of unknown function UPF0004 [Synechococcus elongatus PCC 7942] Length = 452 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 142/448 (31%), Positives = 231/448 (51%), Gaps = 35/448 (7%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N D+ M + GY + AD++V+NTC + A E+ +R L Sbjct: 13 GCEKNRIDTEHMIGLLAEAGYGIDANEALADVVVVNTCSFIQAAREE------SVRTL-- 64 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 + E G +V+AGC+AQ +++L P +VG Y+R+ ++L+R G+RV Sbjct: 65 VELAESGKK-IVIAGCLAQHFQDQLLAELPEAIALVGTGDYHRIVDVLQRTESGERV--N 121 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 S E F I D R R T A+L + EGCD C FC++P+ RG + SRS+ Sbjct: 122 AISQEPSF----IADENLPRYRTTTSAVAYLRVAEGCDYRCAFCIIPHLRGKQRSRSIES 177 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIK-GLVRLRYTT 267 +V EA++L GV E+ L+ Q + GLD K ++LL L ++ +R+ Y Sbjct: 178 IVAEAKQLAAEGVQELVLISQITTNY---GLDRYGKPMLAELLRQLGQVDVPWIRIHY-- 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++ +I A + ++PYL LP+Q ILK+MNR +II++++ P Sbjct: 233 AYPTGLTPEVIAAIRETHNVLPYLDLPLQHSHPEILKAMNRPWQGNVNDRIIEKLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D + + FI GFPGET++ FR + + + F +SP GT ++ V ++VK Sbjct: 293 DAVLRTTFIAGFPGETEEHFRHLQQFIQRHEFDHVGVFAFSPEEGTAAIDLPNPVPDDVK 352 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440 R L+ Q+ + E++ N A +G++++VLIE+ G +GRS P + VV Sbjct: 353 EARRDALMATQQPIAERR---NRAQIGRLVDVLIEQEHPSTGLKIGRSARFAPEVDGVVY 409 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + +G ++ VRITD I L+GE+ Sbjct: 410 VQGDAALGQLVTVRITDADIYDLHGEVA 437 >gi|304440349|ref|ZP_07400238.1| MiaB family RNA modification enzyme [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371101|gb|EFM24718.1| MiaB family RNA modification enzyme [Peptoniphilus duerdenii ATCC BAA-1640] Length = 444 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 134/456 (29%), Positives = 240/456 (52%), Gaps = 40/456 (8%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +F+ + GC N D+ M + + E N++DDAD+I++NTC E A E+ Sbjct: 5 YFI-TLGCSKNDVDTDLMNTILDEKKSEATNNVDDADVIIVNTCGFIESAKEESIDMTLE 63 Query: 87 IRNLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + + K N ++K +++AGC+A+ E+++ P ++ ++G ++ E+++ + Sbjct: 64 VASYKENKKLKS-----LILAGCLAERYSNELMKEIPEIDGIIGTGHLNKINEVIDLSLE 118 Query: 146 GKRVV-----DTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYT 198 GK+ V +++Y ++G K+ +T ++ I EGCD FCT+C++P Sbjct: 119 GKKPVFIGDINSEY-----------LEGNLKSKQDINITEYVKISEGCDNFCTYCIIPKL 167 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 +G SR L +V E + L++NG E+ L+ QN + G L GE + LL+ L +I+ Sbjct: 168 KGKNRSRKLENIVGEVKYLVENGTREVILIAQNTTDY-GIDLYGE-YRLAKLLHELEKIE 225 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L +R +P + LI + L+ Y +P+Q SD +LK MNRR + + + Sbjct: 226 DLKWIRVMYLYPDHFTKELIDEFKNNKKLVKYADIPLQHVSDNVLKRMNRRTNKEDIKNL 285 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I +RS D+ I + FIVGFPGET++DF ++ ++ + +F YS GTP +N+ Sbjct: 286 IKTLRSEIDDMVIRTTFIVGFPGETEEDFMELLEFINFAKLDRVGAFTYSKEEGTPAANL 345 Query: 379 LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW- 434 Q+ E++K ER++ Q + E+ + ++ VG+++EVLIE+ +K +GRS + Sbjct: 346 EGQISEDIKQDRFERIMMEQMGISEELL---NSKVGKVLEVLIEEKADDK-TYIGRSEYD 401 Query: 435 -----LQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 + + + + IG +KV I D + L G Sbjct: 402 APEIDTEVIFTSDRELEIGSFVKVFIEDSQEYELLG 437 >gi|186684627|ref|YP_001867823.1| MiaB-like tRNA modifying enzyme YliG [Nostoc punctiforme PCC 73102] gi|238066420|sp|B2IVR7|RIMO_NOSP7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|186467079|gb|ACC82880.1| MiaB-like tRNA modifying enzyme YliG [Nostoc punctiforme PCC 73102] Length = 439 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 141/452 (31%), Positives = 227/452 (50%), Gaps = 35/452 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC+ N D+ M M GY + + AD +++NTC E A ++ L + Sbjct: 9 ISHLGCEKNRIDTEHMLGMLVEAGYGVDTNEELADYVIVNTCSFIEAARQESVRTLVELA 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 N +I V+ GC+AQ E++L P VVG Y+++ ++ER G+R Sbjct: 69 E-ANKKI--------VITGCMAQHFQEQLLEELPEAVAVVGTGDYHKIVNVIERVELGER 119 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V S+E + I D R R T A+L + EGCD C FC++P+ RG + SR Sbjct: 120 V--KQVSIEPTY----IADETTPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRL 263 ++ +V EA +L+ GV EI L+ Q + GLD K ++LL +L ++ +R+ Sbjct: 174 TIESIVAEAEQLVSQGVKEIILISQITTNY---GLDIYGKPKLAELLRALGKVDIPWIRM 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P ++ I A + ++PYL LP+Q IL++MNR IIDRI+ Sbjct: 231 HY--AYPTGLTPDAIAAIQETPNVLPYLDLPLQHSHPDILRAMNRPWQGRVNDGIIDRIK 288 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P + + FIVGFPGET + F ++ V + + F +S GTP + Q+ Sbjct: 289 TALPTAVLRTTFIVGFPGETQEHFEHLLEFVQRHEFDHVGVFTFSSEEGTPAYKLPNQLA 348 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436 + V +R L+ LQ+ + +++ N VG+I++VLIE+ E G+L+GR SP + Sbjct: 349 QEVMDDRRYQLMELQQPISQKK---NQQEVGKIVDVLIEQENPESGELIGRSGRFSPEVD 405 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V +G I+ V I LYG++V Sbjct: 406 GLVYVKGQAKLGTIVPVAIHHADTYDLYGQVV 437 >gi|297617812|ref|YP_003702971.1| MiaB-like tRNA modifying enzyme [Syntrophothermus lipocalidus DSM 12680] gi|297145649|gb|ADI02406.1| MiaB-like tRNA modifying enzyme [Syntrophothermus lipocalidus DSM 12680] Length = 444 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 133/401 (33%), Positives = 217/401 (54%), Gaps = 18/401 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + R V + GC++N +S ++ F GY+ ++ + AD+ V+NTC + + K + Sbjct: 3 IKARVTVYTLGCKVNQVESENIKQQFSDYGYQILSGDEVADVYVVNTCAVTHVSERKSRA 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE- 141 L R + KN + +VV GC+AQ +L P V++V+G + R+ EL++ Sbjct: 63 MLRRAKR-KNPKA------VVVATGCLAQV-APNLLAAMPEVDLVIGNSSKDRIAELVQN 114 Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R + K VV + S E R + Y R R AF+ IQ+GC+ +C++C+VPY RG Sbjct: 115 HRGQSSKAVVVGELSKE-PLRRGAWCLPAYERTR---AFVKIQDGCESYCSYCLVPYARG 170 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKG 259 S+ VV E L+ G EI + G + + G D LL + L +++G Sbjct: 171 PVRSKLPEDVVREIDWLVSAGFKEIVITGIHTGMY---GKDLADWDLVRLLETVLVKVQG 227 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 RLR ++ P +++ LI+ L +LH+P+QSGSDR+LK MNRR+T YR ++ Sbjct: 228 DYRLRLSSIEPTEITKKLIELMASEKKLCRHLHIPLQSGSDRVLKLMNRRYTRGFYRDLV 287 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + P A++SD +VGFP E+++DF T+ L+D++ +A F YSPR T +++ Sbjct: 288 MMVTGRVPGTAVTSDVMVGFPTESEEDFLDTLKLIDELPFAGLHVFPYSPRPNTAATDLY 347 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 +V+ VK +R L K R +Q F ++C GQ + VL+E+ Sbjct: 348 PRVENQVKEQRSKALLKLARHKQQRFIESCSGQTLTVLVEE 388 >gi|225570522|ref|ZP_03779547.1| hypothetical protein CLOHYLEM_06624 [Clostridium hylemonae DSM 15053] gi|225160719|gb|EEG73338.1| hypothetical protein CLOHYLEM_06624 [Clostridium hylemonae DSM 15053] Length = 441 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 144/450 (32%), Positives = 228/450 (50%), Gaps = 28/450 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N+ DS M + +GY+ V+ +AD+IV+NTC I + E + + L Sbjct: 7 SLGCDKNLVDSEVMLGLLDREGYQIVDDEAEADIIVVNTCCFIHDAKEESIQTILEMAEY 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + R+K ++V GC+AQ +EI+ P V+ V+G +Y ++ E ++ A G Sbjct: 67 KQTGRLK-----ALIVTGCLAQRYQKEIVEEIPEVDAVLGTSSYDKIAEAVKEALEGHPC 121 Query: 150 VDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ D V E +V G G A+L I EGCDK CT+C++P RG S + Sbjct: 122 MEMEDIDVLPLVESKRLVTTG-----GHYAYLKIAEGCDKHCTYCIIPKIRGNFRSVPME 176 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++V EA L + GV E+ L+ Q + GK + GEK + LL L I+GL +R Sbjct: 177 RLVKEAEALAEQGVKELILVAQETTLY-GKDIYGEK-SLHRLLRKLCGIEGLRWIRILYC 234 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ D LI+ + + YL LP+Q +D ILK M RR + +I+ ++R PD Sbjct: 235 YPEEIYDELIQVIKEEKKICHYLDLPIQHANDDILKRMGRRTDKKQLIEIVGKLRKEIPD 294 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I + + I GFPGET M+ VD++ + + F YSP TP ++M +Q+ E +K+ Sbjct: 295 ITLRTTLITGFPGETIKQHEELMEFVDEMAFERLGVFTYSPEEDTPAASMPDQIPEEIKS 354 Query: 389 ERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440 +R Q +L E Q + F A VGQ + V+IE ++ VGR+ P + ++ Sbjct: 355 DR----QAELMELQQDIVFEQAESMVGQKVLVMIEGRVADENAYVGRTYRDAPGVDGLIF 410 Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGELV 468 + + GD +T L GEL+ Sbjct: 411 INTEEELMSGDFAMAEVTGASEYDLIGELI 440 >gi|197120521|ref|YP_002132472.1| MiaB-like tRNA modifying enzyme YliG [Anaeromyxobacter sp. K] gi|238065287|sp|B4UKQ2|RIMO_ANASK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|196170370|gb|ACG71343.1| MiaB-like tRNA modifying enzyme YliG [Anaeromyxobacter sp. K] Length = 469 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 141/454 (31%), Positives = 230/454 (50%), Gaps = 26/454 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++ + GC N DS M GY V A++IV+NTC E A E+ + Sbjct: 4 RVYMHTLGCPKNRVDSEVMLGTLAEAGYRLVQDPAQAEVIVVNTCGFIESAKEESVEAIV 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + + K +EG +VV GC+ Q EE+ R P V+ +G Y + ++ A+ Sbjct: 64 ELADQK----REGRCRKLVVTGCLVQRHAEELARELPEVDHFLGTGAYQDVARIVSDAQA 119 Query: 146 GKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + VV D D+ R+ N TA+L I EGCD C FC++P RG + S Sbjct: 120 KRLVVPDPDFVHSSATPRV-------NSLPSHTAYLKIAEGCDNACAFCIIPKLRGGQRS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + +V EA L G E++L+ Q++ A+ G+ L G K LL L+++ G+ +R Sbjct: 173 RPIDDLVAEAAALAAQGTVELSLVAQDLTAY-GQDLPG-KVRLHHLLPELAKVDGIRWIR 230 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++PRD+ D L+ A D ++ YL +P+Q SDR+L++M R + R ++ R+RS Sbjct: 231 LHYAYPRDVPDALVAAIADEPRIVKYLDMPLQHSSDRLLRAMKRGRDSVFLRDLLARLRS 290 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P +A+ + IVG PGET+ DF + V++ + + F+YS GTP + M +QV + Sbjct: 291 RIPGLALRTALIVGLPGETEADFEDLLRFVEEQRFERLGVFEYSAEEGTPAAEMADQVPD 350 Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ 436 VK E R++ +Q+ + + A +G+ +EVL+E +E G+ ++P + Sbjct: 351 AVKRERRDRIMAVQQAISR---AHQQAMIGRRVEVLVEGRAEETEHLLAGRHAQQAPEID 407 Query: 437 SVV-LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + +N G+I+ V ITD L G +V Sbjct: 408 GLTYINDGVAYPGEIVTVEITDAAEYDLVGRVVA 441 >gi|153953540|ref|YP_001394305.1| oxidoreductase [Clostridium kluyveri DSM 555] gi|146346421|gb|EDK32957.1| Predicted oxidoreductase [Clostridium kluyveri DSM 555] Length = 434 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 134/440 (30%), Positives = 244/440 (55%), Gaps = 19/440 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M + F + YE VN + AD+ V+NTC + +K + R + KN Sbjct: 5 GCRVNQYETEAMAEKFIEKEYELVNFEEYADVYVINTCTVTNMGDKKSRQMIHRAKR-KN 63 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-RFGKRVVD 151 S ++ V GC +Q +E+ + + V+VV+G + + + +A + ++++ Sbjct: 64 S------SAVIAVVGCYSQIAPDEVSKING-VDVVLGTKNKGDILHFVNKAFKDEEKIIK 116 Query: 152 TDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + +++K FE L+I + NR R AFL IQ+GC++FC++C++P+ RG S+ ++ Sbjct: 117 VSHVLKNKTFEDLNISEYQ-NRTR---AFLKIQDGCNRFCSYCLIPFARGPVCSKEPDKI 172 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 + E +KL N EI L G ++ ++ G + G +L + +IKG+ R+R + P Sbjct: 173 IKEVKKLQVNNFKEIILSGIHIASY-GVDISGS-WNLIKILEEIDKIKGIDRVRIGSIDP 230 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 + ++ +I L L P+ HL +QSG D L MNR++T EY +I+ ++R D++ Sbjct: 231 KFFTEDIINRMASLTKLCPHFHLSLQSGCDSTLNRMNRKYTTTEYEKIVYKLRDSIKDVS 290 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I++D IVGFPGET+++F T D ++KI ++ FKYS R GT ++M EQ+D +K ER Sbjct: 291 ITTDIIVGFPGETEEEFYKTYDFLNKIELSKIHVFKYSRREGTKAADMKEQIDGKIKDER 350 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSP-WLQSVVLNSKNHNI- 447 + K + F + +G ++VL E K +K G +P +++ + +++ N+ Sbjct: 351 SSKIIKLNERLENKFMNRFLGNNMDVLYEQKVSGDKIYYEGYTPNYIKVIAESAEGENLE 410 Query: 448 GDIIKVRITDVKISTLYGEL 467 G ++ ++ VK + G + Sbjct: 411 GKVLNTKLESVKEGYILGRI 430 >gi|4104517|gb|AAD02057.1| unknown [Clostridium acetobutylicum DSM 1731] Length = 386 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/395 (32%), Positives = 216/395 (54%), Gaps = 22/395 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S M + F G+E V++ + AD V+NTC + K + R R Sbjct: 7 TLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMISRAR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT-----YYRLPELLERARF 145 K D ++ GC +Q E E++ V++V+G + +Y + ER + Sbjct: 65 -----KANKDAVIAAVGCYSQVEPEKVAEIEG-VDIVLGTKNKGDIIHYVNKFIEERNQI 118 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V D + KFE L+I D ++ R AFL IQ+GC++FC++C++PY RG S+ Sbjct: 119 ---VNVKDVFTDKKFEDLNI-DEYQDKTR---AFLKIQDGCNRFCSYCLIPYARGGVCSK 171 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +V+ E ++L ++G EI L G ++ ++ G L G+ S ++ +I G+ R+R Sbjct: 172 NPEKVIGEIKRLAEHGFKEIILSGIHIASY-GDDLKGDWNLIS-IIEKAEQIDGIERIRI 229 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 + PR + I ++ + P+ HL +QSG L+ MNR++TA EY++I+ ++R Sbjct: 230 GSIEPRFFDEDTISKIKNMKKMCPHFHLSLQSGCTETLERMNRKYTAEEYKEIVYKLREN 289 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 D++I++D IVGFPGETD++F T D + +I A+ FKYSPR GT + M Q++ N Sbjct: 290 ISDVSITTDVIVGFPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAMKNQINGN 349 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 VK +R L + + + F + + ++VL EK Sbjct: 350 VKDKRSAELIELDKINEKKFMSKFLDREMDVLFEK 384 >gi|158319633|ref|YP_001512140.1| MiaB-like tRNA modifying enzyme YliG [Alkaliphilus oremlandii OhILAs] gi|238065284|sp|A8MLX7|RIMO_ALKOO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|158139832|gb|ABW18144.1| MiaB-like tRNA modifying enzyme YliG [Alkaliphilus oremlandii OhILAs] Length = 438 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 137/450 (30%), Positives = 232/450 (51%), Gaps = 36/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ + + +F S + VN +DA++IV+NTC E A ++ + + + L Sbjct: 7 SLGCSKNLVVTEEIIGLFKSNHFNIVNKKEDAEIIVINTCGFIESAKQEAINTILEMAKL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 KN++ K ++VAGC+ Q +E+ + P V++ + Y ++ + +E ++ Sbjct: 67 KNNKCK-----YLIVAGCLVQRYKKELEKAIPEVDLFISISEYKQIWKEIEN------LL 115 Query: 151 DTDYSVEDKFERLS-IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 D + E + + ++ G N A+L I EGCD CT+C +P +G ISR++ Sbjct: 116 DLETGKESNLDYHNRVLTTGSN-----MAYLKIGEGCDNHCTYCAIPNIQGPYISRTMED 170 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++ EAR L G+ E+ ++ Q+ + GLD GE LL L +I+ + +R+ Sbjct: 171 ILKEARNLAKQGIKELIVIAQDTTKY---GLDIYGE-ARLPQLLEELCKIEDIEWVRFLY 226 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P ++D LIK G+ D + Y +P+Q SD +LK MNR+ R II++IR P Sbjct: 227 VYPESITDELIKVVGENDKICNYFDIPIQHISDSVLKRMNRKSDGASVRNIIEKIRREIP 286 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D+ I + IVGFPGET++DF+ + V++ + + F YS TP + + EQ+ K Sbjct: 287 DVIIRTTLIVGFPGETEEDFKELYEFVEETKFDKLGVFAYSKEDNTPAAKLKEQIHHATK 346 Query: 388 AERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440 RL + LQ+K+ + + + VG + +VLIE K +GR+ P + VV Sbjct: 347 KSRLRKIMALQEKISRESL---EQKVGNVYKVLIESRTKGGNYYIGRTYMDVPDMDGVVY 403 Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGEL 467 N+K + + + RI K L+GEL Sbjct: 404 IVNNTKENLMNTFVDCRIQRAKDYDLFGEL 433 >gi|260587855|ref|ZP_05853768.1| RNA modification enzyme, MiaB family [Blautia hansenii DSM 20583] gi|260542120|gb|EEX22689.1| RNA modification enzyme, MiaB family [Blautia hansenii DSM 20583] Length = 446 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 139/445 (31%), Positives = 225/445 (50%), Gaps = 20/445 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M M GY N +A++IV+NTC A E+ + + L Sbjct: 8 SLGCDKNLADSEEMLGMLVENGYTLTNDETEAEIIVVNTCAFIHDAKEESINSI-----L 62 Query: 91 KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + +R K G L +++V GC+AQ EEI++ P V+ V+G ++ + + L+ G+R Sbjct: 63 EMARYKTEGVLKVLLVTGCLAQRYKEEIIKEIPEVDAVLGTTSFGDIIKALDIVFEGERY 122 Query: 150 VD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ D + + + ++ G G +L I EGCDK CT+C++P RG S + Sbjct: 123 LEFKDINALTEISKKRVLTTG-----GYYGYLKIAEGCDKRCTYCIIPKLRGNYRSIPME 177 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 Q++ +A L GV E+ L+ Q + GK + G+KC LL L +I G+ +R Sbjct: 178 QLISQAEYLAGQGVRELILVAQETTVY-GKDIYGKKC-LHKLLKELCKIPGIQWIRILYC 235 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ LI+ + + YL LP+Q SD+ILK M RR T E I+ +R PD Sbjct: 236 YPEEIYPELIQTMKEEKKICHYLDLPIQHCSDKILKKMGRRTTKQELIDIVTLLRKEIPD 295 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I + + I GFPGET++D M+ +D + + + F YS TP +NM Q+ E VK Sbjct: 296 IILRTTLITGFPGETEEDHEELMEFIDTMEFDRLGVFTYSAEEDTPAANMPNQIAEEVKQ 355 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKN 444 +R L + +E + + +G +EV+IE ++ VGR+ P + + + + Sbjct: 356 DRQAELMELQQEISIDKGNDKIGTCVEVMIEGKVADENAYVGRTYGDAPNVDGYIFINTD 415 Query: 445 HNI--GDIIKVRITDVKISTLYGEL 467 + GD +V +T L GEL Sbjct: 416 TELMSGDFARVHVTGALEYDLIGEL 440 >gi|238066628|sp|Q5N1N6|RIMO_SYNP6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO Length = 452 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 142/448 (31%), Positives = 230/448 (51%), Gaps = 35/448 (7%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N D+ M + GY + AD++V+NTC + A E+ +R L Sbjct: 13 GCEKNRIDTEHMIGLLAEAGYGIDANEALADVVVVNTCSFIQAAREE------SVRTL-- 64 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 + E G +V+AGC+AQ +++L P +VG Y+R+ ++L+R G+RV Sbjct: 65 VELAESGKK-IVIAGCLAQHFQDQLLAELPEAIALVGTGDYHRIVDVLQRTESGERV--N 121 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 S E F I D R R T A+L + EGCD C FC++P+ RG SRS+ Sbjct: 122 AISQEPSF----IADENLPRYRTTTSAVAYLRVAEGCDYRCAFCIIPHLRGKRRSRSIES 177 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIK-GLVRLRYTT 267 +V EA++L GV E+ L+ Q + GLD K ++LL L ++ +R+ Y Sbjct: 178 IVAEAKQLAAEGVQELVLISQITTNY---GLDRYGKPMLAELLRQLGQVDVPWIRIHY-- 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++ +I A + ++PYL LP+Q ILK+MNR +II++++ P Sbjct: 233 AYPTGLTPEVIAAIRETHNVLPYLDLPLQHSHPEILKAMNRPWQGNVNDRIIEKLKEALP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D + + FI GFPGET++ FR + + + F +SP GT ++ V ++VK Sbjct: 293 DAVLRTTFIAGFPGETEEHFRHLQQFIQRHEFDHVGVFAFSPEEGTAAIDLPNPVPDDVK 352 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440 R L+ Q+ + E++ N A +G++++VLIE+ G +GRS P + VV Sbjct: 353 EARRDALMATQQPIAERR---NRAQIGRLVDVLIEQEHPSTGLKIGRSARFAPEVDGVVY 409 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + +G ++ VRITD I L+GE+ Sbjct: 410 VQGDAALGQLVTVRITDADIYDLHGEVA 437 >gi|153002973|ref|YP_001377298.1| MiaB-like tRNA modifying protein YliG [Anaeromyxobacter sp. Fw109-5] gi|238065286|sp|A7H6G8|RIMO_ANADF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|152026546|gb|ABS24314.1| MiaB-like tRNA modifying enzyme YliG [Anaeromyxobacter sp. Fw109-5] Length = 470 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 145/455 (31%), Positives = 232/455 (50%), Gaps = 28/455 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++ + GC N DS M GY AD+IV+NTC E A E+ + Sbjct: 5 RVYLHTLGCPKNRVDSEVMLGTLTGAGYRLERDPAQADVIVVNTCGFIESAKEESVDAIV 64 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K +EG +VV GC+ Q EE+ P V+ +G Y + ++ A+ Sbjct: 65 ELAGMK----QEGRCKKLVVTGCLVQRHAEELSAELPEVDHFLGTGAYAEIARVVSDAQA 120 Query: 146 GKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + VV D D+ R+ N TA+L I EGCD C FC++P RG + S Sbjct: 121 KRLVVPDPDFVHSAATPRV-------NSLPSHTAYLKISEGCDNACAFCIIPKLRGAQRS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + VV EA L G E++L+ Q++ A+ G L G K LL L ++ G+ LR Sbjct: 174 RPVDDVVAEAAALAAQGTVELSLVAQDLTAY-GYDLPG-KVRLHHLLPELCKVDGIRWLR 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++PRD+ D L++ ++ YL +P+Q SDR+L+SM R + R+++ R+R+ Sbjct: 232 LHYAYPRDVPDALVEVIAREPKIVKYLDMPLQHSSDRLLRSMKRGRDSVFLRELLARLRA 291 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P IA+ + IVG PGET++DF + V++ + + F++SP GTP ++M EQV + Sbjct: 292 RVPGIALRTSLIVGLPGETEEDFEDLVRFVEEQRFERLGVFEFSPEDGTPAADMAEQVPD 351 Query: 385 NVK---AERLLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWL 435 VK +R++ LQ+++ RE Q A VG+ +EVL+E +E G+ ++P + Sbjct: 352 VVKRARRDRIMALQQEISREHQ----RAMVGRRLEVLVEGRAEETEHLLAGRHAQQAPEI 407 Query: 436 QSVV-LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + +N G+++ V ITD L G +V Sbjct: 408 DGITYVNDGVAYPGELVTVEITDASEYDLVGHVVA 442 >gi|315424979|dbj|BAJ46654.1| tRNA modifying enzyme [Candidatus Caldiarchaeum subterraneum] Length = 432 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 137/460 (29%), Positives = 237/460 (51%), Gaps = 48/460 (10%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 Q ++PQ+ + + YGC N D + QGY V ++AD +VL TC +++ A++ Sbjct: 7 QRVMPQKVYAEVYGCSANQADGEIALGILQKQGYIMVERPNEADYVVLVTCAVKKPTADR 66 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 + + + +L ++VAGC+A E E + R +P V++ P++ + Sbjct: 67 MIHRIKKFSSLGPR---------LIVAGCMATGEAERVRRVAPEA-VLLPPRSITEVSAA 116 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYN-------RKRGVTAFLTIQEGCD-KFCT 191 +E F DGG RK V A + + EGC C+ Sbjct: 117 IEGHGF---------------------DGGGTKLGLPRLRKNPVIAIVPVSEGCRWSRCS 155 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 FC+VP +R S + VVDE RK ++ G E+ L Q++ ++ GL+ + +L+ Sbjct: 156 FCIVPRSRPGYESYPVRAVVDEVRKAVNEGCREVWLTSQDMGSY---GLESGRNLLPELI 212 Query: 252 YSLSEIKGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 S++ ++G R +P + + L+KA+ + + ++H+PVQSGSD++LK MNR Sbjct: 213 ESVNSLEGKFYTRIGMMNPIYLKPILQKLVKAYSG-EKIYKFIHVPVQSGSDKVLKDMNR 271 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 H+ + +++ R P I +S+D IVG+P ETD+DF T+ LV+K A +Y Sbjct: 272 GHSVQLFYHVVEAFRRRFPSITVSTDLIVGYPTETDEDFEQTLKLVEKTRPAVVNVSRYF 331 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 PR GTPG L+ + +V A R+ L L + Q+ N+ +G + EVLI + GK KGK+ Sbjct: 332 PRPGTPGEG-LKTLPHHVVARRVSELNDLLSKIQLESNEHWLGWVGEVLINEVGK-KGKM 389 Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +GR+ + +VL++ ++G ++ + DV+ + L G ++ Sbjct: 390 MGRNFAYRPIVLDAPRESLGRFVEAEVVDVEKNYLLGRVL 429 >gi|225028525|ref|ZP_03717717.1| hypothetical protein EUBHAL_02804 [Eubacterium hallii DSM 3353] gi|224954168|gb|EEG35377.1| hypothetical protein EUBHAL_02804 [Eubacterium hallii DSM 3353] Length = 450 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/407 (29%), Positives = 217/407 (53%), Gaps = 31/407 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ ME++ GYE V+ + AD+ ++NTC + A K + R + Sbjct: 10 TLGCKVNQYETDAMEEILEKAGYEIVSFKETADVYIINTCSVTNMADRKSRQMIHRAK-- 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-- 148 K D ++V AGC QA EE+ +++ +++VG + ++LE K Sbjct: 68 -----KNNPDAIIVAAGCYVQAAEEELAKKNE-ADILVGNNKKKDIAQILEEYFAAKEPE 121 Query: 149 --------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 V+D +++ E +E L+I + A++ IQ+GC++FC++C++PYTRG Sbjct: 122 QEVPVVSEVIDINHTKE--YEDLTI----HKVNEHTRAYIKIQDGCNQFCSYCIIPYTRG 175 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S++ +V++E + L G EI L G +++++ G D T D++ + +++ + Sbjct: 176 RIRSKNPEEVIEEVKNLAAQGYKEIVLTGIHLSSY---GKDLGTVTLLDVIKRIQQVEDV 232 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + PR +++ +K D + P+ HL +QSG D LK MNR++T EY + ++ Sbjct: 233 ERIRLGSLEPRIITEEFVKELVKCDKVCPHFHLSLQSGCDETLKRMNRKYTTEEYEEALN 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R A+++D I GF GET+++F T ++KI + FKYS R GT M Sbjct: 293 ILRKYYEHPALTTDVIAGFVGETEEEFEKTRAYLEKINLYEMHIFKYSVREGTRAQKMSG 352 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQ----IIEVLIEKHGK 423 V E VK ER L + + +F + VG+ ++E ++EK+GK Sbjct: 353 HVPEQVKTERSEVLLSMAKRHKTAFEEWYVGRKEKVLLEEIVEKNGK 399 >gi|320530820|ref|ZP_08031858.1| MiaB-like tRNA modifying enzyme [Selenomonas artemidis F0399] gi|320136906|gb|EFW28850.1| MiaB-like tRNA modifying enzyme [Selenomonas artemidis F0399] Length = 438 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 140/452 (30%), Positives = 231/452 (51%), Gaps = 25/452 (5%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 +C++ F+ + GC++N +++ ME +F ++GY+ V + AD+ V+NTC + + K Sbjct: 5 RCVLSAVAFM-TLGCKVNQFETETMEGLFRARGYDVVPFEESADVYVVNTCSVTHLSDRK 63 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 + R N R + V GC AQ EEI R V VV+G + ++ + Sbjct: 64 SRQIIRRAAR-TNPRA------CIAVCGCYAQVAPEEI-RALDGVRVVIGTKERAQIVDY 115 Query: 140 LE---RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 +E RA G TD FE + + + + AFL I++GC FCTFC++P Sbjct: 116 VEEAMRAESGISGQITDIMQARTFEDIPLA----HMPQRTRAFLKIEDGCQNFCTFCIIP 171 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 Y RG SR L+ V E ++ G EI L G ++ A+ G L G + T +D + Sbjct: 172 YARGPVKSRELAAVRRETERIAAAGFHEIVLTGIHLGAY-GIDLPG-RPTLADACRTALS 229 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + L RLR + ++S+ L++ +LHLP+Q+GSD +L +MNR + + Sbjct: 230 LPELRRLRLGSLESVELSNDLLELIRTEPRFAAHLHLPLQAGSDGVLTAMNRHYDTAAFA 289 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++I+ +R P +A+S+D IVGFPGET+ F ++D V ++G+A+ F YS R GTP + Sbjct: 290 RLIEDVRRAVPGVAVSTDIIVGFPGETEAQFEESLDFVRRMGFARMHVFPYSARRGTPAA 349 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPW 434 +QV ++ ER +Q E V ++ A +G + +VL E HG G + Sbjct: 350 RRPDQVPAPIRKERAARMQALAEELAVGYHRAALGTVTDVLFETTAHGVTDGLT---DTY 406 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 ++ V GD++ VR+T + ++GE Sbjct: 407 IR--VYTDAPVTRGDLVSVRLTRLFRDGVWGE 436 >gi|118581497|ref|YP_902747.1| MiaB-like tRNA modifying protein YliG [Pelobacter propionicus DSM 2379] gi|238066600|sp|A1ATL9|RIMO_PELPD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|118504207|gb|ABL00690.1| SSU ribosomal protein S12P methylthiotransferase [Pelobacter propionicus DSM 2379] Length = 450 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 142/459 (30%), Positives = 234/459 (50%), Gaps = 35/459 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSF 83 Q+ + S GC N+ D+ M + Q YE +AD+I++NTC I+E E + + Sbjct: 7 QKVSMVSLGCSKNLVDAEVMLGLLARQEYEITTDEREADIIIVNTCSFIKEAKQESIDAI 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 L + R ++V+GC+ Q EE+ R P V++ +G Y R+ E+L E+ Sbjct: 67 LDLAERKNDGRCH-----TLIVSGCLPQRYQEELARELPEVDIFIGTGDYPRIAEILAEK 121 Query: 143 ARFGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + +++ D D+ ++ RL N ++L I EGC C++C++P R Sbjct: 122 SGTDEQLCYIGDPDFVFDETLPRL-------NSSPAWFSYLKIGEGCSNRCSYCIIPKLR 174 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G SR L +V EA +L GV E+ ++ Q++ + DG T LL L +I G Sbjct: 175 GPYRSRPLEALVAEAEQLASRGVKELNIISQDITRYGSDMEDG--TTLETLLRRLVQIDG 232 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + +R ++P +SD LI D + YL +P+Q SD +LK M RR + R+++ Sbjct: 233 IQWIRLLYAYPDGISDALIALIRDEPKICKYLDIPLQHISDPVLKLMRRRSNEQQIRELL 292 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R P +A+ + IVGFPGET +DF + M V++ + + F YS GTP + M Sbjct: 293 AKLRREIPTLALRTSLIVGFPGETMEDFTSLMQFVEQARFDRLGVFCYSREEGTPAATMP 352 Query: 380 EQVDENVKAER---LLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKE-----KGKLV 429 +QV E VK ER L+ +Q +L SF N +G +V++E + +E KG+ Sbjct: 353 DQVSERVKRERHRKLMRIQARL-----SFKRNRELIGTTEQVIVEGYSEETELLLKGRSS 407 Query: 430 GRSPWLQ-SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 ++P + V + + ++GDI+ +RITD L GE+ Sbjct: 408 RQAPDIDGQVYITAGTADVGDIVALRITDSSDYDLIGEI 446 >gi|300867546|ref|ZP_07112196.1| Ribosomal protein S12 methylthiotransferase rimO [Oscillatoria sp. PCC 6506] gi|300334434|emb|CBN57366.1| Ribosomal protein S12 methylthiotransferase rimO [Oscillatoria sp. PCC 6506] Length = 439 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 134/445 (30%), Positives = 228/445 (51%), Gaps = 27/445 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N D+ M + GY+ + + AD +++NTC + A E+ L + N Sbjct: 13 GCEKNRIDTEHMIGLLAQAGYQVDANEELADYVIVNTCSFIQAAREESVRTLVELAQ-AN 71 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 +I V+AGC+AQ +++L P +VG Y+++ ++E+ G RV T Sbjct: 72 KKI--------VIAGCMAQHFQQDLLNELPEAVALVGTGDYHQIVGVIEQVEKGDRV--T 121 Query: 153 DYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 S E + I D R R A+L I EGCD C FC++P+ RG + SR++ Sbjct: 122 LVSAEPTY----IADENTPRYRTTPEAVAYLRIAEGCDYRCAFCIIPHLRGNQRSRTIES 177 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTS 268 +V EA +L GV EI L+ Q + GK + GE ++LL++L ++ +R+ Y + Sbjct: 178 IVAEAEQLAAEGVKEIILISQITTNY-GKDIYGEP-KLAELLHALGKVDIPWIRMHY--A 233 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ ++ A + ++PYL LP+Q IL++MNR A II+RI++ PD Sbjct: 234 YPTGLTPKVMAAIQETPNILPYLDLPLQHSHPEILRAMNRPFQAGVNDSIIERIKASMPD 293 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + + FIVGFPGET++ ++ V + + F +SP GTP ++ Q+ + V Sbjct: 294 AILRTTFIVGFPGETEEHAAHLLEFVKRHEFDHVGVFTFSPEEGTPAHDLPNQLPQEVME 353 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNSKN 444 R + + + N VG++++VL+E+ E G+L+GR SP + +V Sbjct: 354 ARREAVMAAQQPISLKNNQKSVGKVVDVLLEQENPETGELIGRSARFSPDVDGLVYVEGE 413 Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469 ++G +++V IT+ I LYG + Sbjct: 414 ASLGAMVRVNITNADIYDLYGSVAT 438 >gi|94968239|ref|YP_590287.1| MiaB-like tRNA modifying enzyme [Candidatus Koribacter versatilis Ellin345] gi|94550289|gb|ABF40213.1| MiaB-like tRNA modifying enzyme [Candidatus Koribacter versatilis Ellin345] Length = 495 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 138/458 (30%), Positives = 226/458 (49%), Gaps = 34/458 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FFV+++GC+ D +E +G R +S DA+++VLNTC + A + + + R Sbjct: 41 FFVENFGCRATQADGAAIERQLLEKGLARGSSAIDAEVVVLNTCTVTASADQDARAAIRR 100 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---- 142 I+ + + ++V GC AQ EEI R V++VVG + LP L Sbjct: 101 IK-------RGNPEARIIVTGCYAQRAPEEISRIEG-VSLVVGNSHKHALPTLAANLAPK 152 Query: 143 -----ARFGKRVVDTDYS---VEDKFERLSIV-------DGGYNRKRGVTAFLTIQEGCD 187 A G T+ + + D F ++ + R R L IQ+GC+ Sbjct: 153 GFVSVASIGVGTAATEAAPVVIGDIFAHTELMAAPVFDSESAAERTR---PNLKIQDGCN 209 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247 C+FCV+PY RG S ++ V+ E L++ G EI L G N+ W G L + F Sbjct: 210 NRCSFCVIPYVRGKSRSLTMDSVLHEVDSLVEAGYKEIVLSGINLGRW-GNDLR-PRVRF 267 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 +L+ ++ E + ++R ++ P D S+ LI + + + H P+QSGSDRIL+ M+ Sbjct: 268 EELVRNIVENTAIPKVRISSVEPMDWSNELIALVAESPKICKHAHAPLQSGSDRILRKMH 327 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 RR+ + Y ++RIR+ P AI +D +VGFPGETD+ F T ++ + + F Y Sbjct: 328 RRYRPWHYADRLERIRTAMPQAAIGADVMVGFPGETDEHFEETRSFIESLPFTYLHVFTY 387 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 S R GTP + M EQV V ER L+ + E++ F ++ VG+ IE + + ++ G Sbjct: 388 SSRPGTPSAAMAEQVPVYVARERNKVLRDLIAEKKHGFMESLVGKEIEAVTLTNQRD-GM 446 Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 + Q ++ + H +++VR+ V +L G Sbjct: 447 TEALTDNYQKAMI-AGEHTSNQLVRVRLDRVDGESLLG 483 >gi|220915232|ref|YP_002490536.1| MiaB-like tRNA modifying enzyme YliG [Anaeromyxobacter dehalogenans 2CP-1] gi|219953086|gb|ACL63470.1| MiaB-like tRNA modifying enzyme YliG [Anaeromyxobacter dehalogenans 2CP-1] Length = 469 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 140/454 (30%), Positives = 230/454 (50%), Gaps = 26/454 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++ + GC N DS M GY V A++IV+NTC E A E+ + Sbjct: 4 RVYMHTLGCPKNRVDSEVMLGTLAEAGYRLVQDPAQAEVIVVNTCGFIESAKEESVEAIV 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + + K +EG +VV GC+ Q EE+ R P V+ +G Y + ++ A+ Sbjct: 64 ELADQK----REGRCRKLVVTGCLVQRHAEELARELPEVDHFLGTGAYQDVARIVSDAQA 119 Query: 146 GKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + VV D D+ R+ N TA+L I EGCD C FC++P RG + S Sbjct: 120 KRLVVPDPDFVHSSATPRV-------NSLPSHTAYLKIAEGCDNACAFCIIPKLRGGQRS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + +V EA L G E++L+ Q++ A+ G+ L G K LL L+++ G+ +R Sbjct: 173 RPIDDLVAEAAALAAQGTVELSLVAQDLTAY-GQDLPG-KVRLHHLLPELAKVDGIRWIR 230 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++PRD+ D L+ A D ++ YL +P+Q SDR+L++M R + R ++ R+RS Sbjct: 231 LHYAYPRDVPDALVAAIADEPKIVKYLDMPLQHSSDRLLRAMKRGRDSVFLRDLLARLRS 290 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P +A+ + IVG PGET+ DF + V++ + + F+YS GTP + M +QV + Sbjct: 291 RIPGLALRTALIVGLPGETEADFEDLLRFVEEQRFERLGVFEYSAEEGTPAAEMADQVPD 350 Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ 436 +K E R++ +Q+ + + A +G+ +EVL+E +E G+ ++P + Sbjct: 351 ALKRERRDRIMAVQQAISR---AHQQAMIGRRVEVLVEGRAEETEHLLAGRHAQQAPEID 407 Query: 437 SVV-LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + +N G+I+ V ITD L G +V Sbjct: 408 GLTYINDGVAYPGEIVTVEITDAAEYDLVGRVVA 441 >gi|158334864|ref|YP_001516036.1| hypothetical protein AM1_1701 [Acaryochloris marina MBIC11017] gi|238065264|sp|B0CB83|RIMO_ACAM1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|158305105|gb|ABW26722.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 443 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 144/455 (31%), Positives = 235/455 (51%), Gaps = 37/455 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V GC+ N D+ M + GY + AD +++NTC + A E+ L + Sbjct: 9 VAHLGCEKNRVDTEHMLGLLVEAGYPVDSDEAFADYVIVNTCSFIQAAREESVRTLVELA 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 N +I V+ GC+AQ EE+L P +VG Y+++ ++++RA G+R Sbjct: 69 E-ANKKI--------VITGCMAQHFQEELLEELPEAVALVGTGDYHKIVDVIQRAEAGER 119 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V + S E + I D R R T A++ I EGCD C FC++P+ RG + SR Sbjct: 120 V--KEVSPEPTY----IADETVPRYRTTTEGTAYVRIAEGCDYGCAFCIIPHLRGKQRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264 S+ +V EA++L GV E+ L+ Q + G L G K ++LL +L E+ +R+ Sbjct: 174 SIESIVAEAQQLAAEGVQELILISQITTNY-GIDLYG-KPQLAELLRALGEVDVPWIRMH 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y ++P ++ ++ A + D ++PYL LP+Q +L++MNR QII++I++ Sbjct: 232 Y--AYPTGLTPEVMAAIQETDNVLPYLDLPLQHSHPEVLRAMNRPWQGQVNDQIIEKIKT 289 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD + + FIVGFPGETD+ F + V + + F +SP GTP ++ Q+ + Sbjct: 290 ALPDAVLRTTFIVGFPGETDEHFEHLCEFVQRHEFDHVGVFTFSPEEGTPAFDLPNQLPQ 349 Query: 385 NV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV-- 439 +V + +RL+ LQ+ + QQ N VG+ ++VLIE+ G+L+GRSP + V Sbjct: 350 DVMDARRDRLMALQQPISWQQ---NQQEVGKTVQVLIEQEHPGSGQLIGRSPRFSADVDG 406 Query: 440 ------LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + +G + V+ITD L G+LV Sbjct: 407 LVYIDPGEAPSPRLGSLTPVQITDADAYDLQGQLV 441 >gi|313895534|ref|ZP_07829090.1| ribosomal protein S12 methylthiotransferase RimO [Selenomonas sp. oral taxon 137 str. F0430] gi|312975660|gb|EFR41119.1| ribosomal protein S12 methylthiotransferase RimO [Selenomonas sp. oral taxon 137 str. F0430] Length = 442 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 145/440 (32%), Positives = 230/440 (52%), Gaps = 33/440 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRIRN 89 S GC N+ D+ M + G E +AD++++NTC + A E+ + + LG Sbjct: 7 SLGCAKNLVDTEVMLGIMREHGIELTAEPAEADILIVNTCAFIQSAKEESITTVLGMADY 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + R + ++VAGC+ Q G+++L P N ++G + R+ E++E G+R+ Sbjct: 67 KETGRCRS-----LIVAGCLGQRYGQQLLDEIPEANAIIGTGAWSRIMEVVEETLKGRRL 121 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V + ED +I D R R TA++ I EGCD C FC +P RG SR+ Sbjct: 122 V---IAGEDD----TIYDANTPRLRTTPNYTAYVKIAEGCDHRCAFCAIPLIRGGFRSRA 174 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265 + +V EAR+L ++GV E+ L+ Q+ + GLD K + LL L++I+ + +R Sbjct: 175 MEDIVSEARELAESGVRELVLIAQDSANY---GLDLYRKPMLASLLRELAKIEKISWIRV 231 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 S+P+ SD LI+ ++ Y+ LP+Q D +L+SMNR T ++I ++R Sbjct: 232 LYSYPKYFSDELIEVFATEPKVVKYVDLPLQHAHDAVLRSMNRPDTRAGIERLIQKLRER 291 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P + I S FIVGFPGETD ++A D V+ + + F YS TP S M ++V E Sbjct: 292 IPGVTIRSTFIVGFPGETDTHYQALRDFVEAQRFDKLGIFTYSEEEDTPASLMRQKVSEE 351 Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRS----PWL-- 435 V ER L+ LQ K+ E+ N + + I+VLIE + +++G VGRS P + Sbjct: 352 VMQERYHDLMSLQSKISEE---INISLENKEIDVLIEGRDSEQQGIAVGRSYREAPEVDG 408 Query: 436 QSVVLNSKNHNIGDIIKVRI 455 Q + IGDI++VR+ Sbjct: 409 QIYIEGDVGSCIGDIVRVRL 428 >gi|313897043|ref|ZP_07830590.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 137 str. F0430] gi|312974490|gb|EFR39958.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 137 str. F0430] Length = 431 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 138/441 (31%), Positives = 225/441 (51%), Gaps = 24/441 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N +++ ME +F ++GY+ V + AD+ V+NTC + + K + R Sbjct: 8 TLGCKVNQFETETMEGLFRARGYDVVPFEESADVYVVNTCSVTHLSDRKSRQIIRRAAR- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGK 147 N R + V GC AQ EEI R V VV+G + ++ + +E RA G Sbjct: 67 TNPRA------CIAVCGCYAQVAPEEI-RALEGVRVVIGTKERAQIVDYVEEAMRAESGI 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 TD FE + + + + AFL I++GC FCTFC++PY RG SR L Sbjct: 120 SGQITDIMQARTFEDIPLA----HMPQRTRAFLKIEDGCQNFCTFCIIPYARGPVKSREL 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + V E ++ G EI L G ++ A+ G L G + T +D + + L RLR + Sbjct: 176 AAVRRETERIAAAGFHEIVLTGIHLGAY-GIDLPG-RPTLADACRTALSLPELRRLRLGS 233 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++S+ L++ +LHLP+Q+GSD +L +MNR + + ++I+ +R P Sbjct: 234 LESVELSNDLLELIRTEPRFAAHLHLPLQAGSDGVLTAMNRHYDTAAFARLIEDVRRAVP 293 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +A+S+D IVGFPGET+ F ++D V ++G+A+ F YS R GTP + +QV ++ Sbjct: 294 GVAVSTDIIVGFPGETEAQFEESLDFVRRMGFARMHVFPYSARKGTPAARRPDQVPAPIR 353 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVVLNSKNH 445 ER +Q E V ++ A +G + +VL E HG G +++ V Sbjct: 354 KERAARMQALAEELAVGYHRAALGTVTDVLFETTAHGVTDGLT---DTYIR--VYTDAPV 408 Query: 446 NIGDIIKVRITDVKISTLYGE 466 GD++ VR+T + ++GE Sbjct: 409 TRGDLVSVRLTRLFRDGVWGE 429 >gi|297565219|ref|YP_003684191.1| MiaB-like tRNA modifying enzyme YliG [Meiothermus silvanus DSM 9946] gi|296849668|gb|ADH62683.1| MiaB-like tRNA modifying enzyme YliG [Meiothermus silvanus DSM 9946] Length = 457 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 140/452 (30%), Positives = 225/452 (49%), Gaps = 38/452 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ ++GYE + +DA+++V+NTC A E+ S +G Sbjct: 9 SLGCPKALVDSEQILSRLRAEGYETSPTYEDAEVVVVNTCGFITPAVEESLSAIGEA--- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + E G V+V GC+ A E I P V V GP ++ E + R V+ Sbjct: 66 ----LAENGK--VIVTGCLG-ARPEVIQEAHPQVLEVTGPGQVDKVLEAVHR------VL 112 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D D F L + A+L I EGC+ C+FC++P RG+++SR ++ Sbjct: 113 PPD---ADPFTALIPPQVKLTPRH--YAYLKIAEGCNHKCSFCIIPQLRGLQVSRDAGEI 167 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVR 262 + EA +L+ G E+ ++ Q+ +A+ R G + DL+ L+E+ VR Sbjct: 168 LSEATRLVSTGTRELLVIAQDTSAYGVDIRHRPSEFQGRQVRAHLVDLVNELAELGAWVR 227 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G + +PYL +P+Q S +IL++M R A + Q I Sbjct: 228 LHYVYPYPHVKQLIPLMAEGKI---LPYLDVPLQHASPKILRAMRRPGGAESHLQTIREW 284 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RS+ PD+AI S FIVGFPGET++DF ++ + + + +F YS G + + V Sbjct: 285 RSIVPDLAIRSTFIVGFPGETEEDFALLLEFLREARLERVGAFTYSEVPGAEANALDNPV 344 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438 + +K ER + + + N A VG+ +EV+++ +G+E G +VGRS P + + Sbjct: 345 PQEIKEERRARFMEVQQRLSLEKNQAKVGKTLEVIVDDYGEEPGMVVGRSKYDAPGIDGL 404 Query: 439 VLNSKNHN--IGDIIKVRITDVKISTLYGELV 468 V + IGD+I+VRIT + LYGE V Sbjct: 405 VYAETDGTVKIGDLIRVRITKAEAYDLYGETV 436 >gi|297519636|ref|ZP_06938022.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli OP50] Length = 271 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 102/237 (43%), Positives = 154/237 (64%), Gaps = 1/237 (0%) Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292 NAWRG+ DG +F+DLL ++ I G+ R+R+TTSHP + +D +I+ + D L+ +LH Sbjct: 1 NAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLH 60 Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 LPVQSGSDRIL M R HTA EY+ II ++R+ RPDI ISSDFIVGFPGET +DF TM Sbjct: 61 LPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMK 120 Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412 L+ + + ++SF +S R GTP ++M++ V E K +RL LQ+++ +Q ++++ +G Sbjct: 121 LIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGT 180 Query: 413 IIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +L+E ++ +L GR+ + V IG + V ITDV ++L G++V Sbjct: 181 TQRILVEGTSRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGKVV 237 >gi|291529131|emb|CBK94717.1| MiaB-like tRNA modifying enzyme [Eubacterium rectale M104/1] Length = 434 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 136/433 (31%), Positives = 222/433 (51%), Gaps = 28/433 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+ + GYE V AD+ V+NTC + A K L + + Sbjct: 10 GCKVNAYETEAMQHLLEEAGYEIVPFTQKADVYVINTCSVTNMADRKSRQMLHKAK---- 65 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 K D +VV AGC Q +E+L V++V+G + L LLE V DT Sbjct: 66 ---KNNPDSIVVAAGCYVQTSEKEVLNDLS-VDIVIGNDRKHDLVRLLEEYSLDS-VNDT 120 Query: 153 DYSVED---KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + D FE L I K AF+ +Q+GC++FC++C++PY RG SR Sbjct: 121 VDDINDGKHDFEELFID----QTKEHTRAFIKVQDGCNQFCSYCIIPYARGRVRSRRFEN 176 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTS 268 V+ E +L NG E+ L G +++++ G+D E+ T +L+ +++ +KG+ R+R + Sbjct: 177 VIAEVERLAANGFKEVVLTGIHLSSY---GVDFEEATGLLELIQAVNAVKGIERIRLGSL 233 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P+ +++ LD + P+ HL +QSG D LK MNR++T EY + + +R Sbjct: 234 EPKIVTEHFASELSKLDKICPHFHLSLQSGCDATLKRMNRKYTTKEYERGCELLRKYFVH 293 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 AI++D IVGFPGET+++F T ++ I + + FKYS R GT + M +Q+DE +KA Sbjct: 294 PAITTDVIVGFPGETEEEFEQTKAYLEHIHFYEMHIFKYSKRKGTRAAVMPDQIDEQIKA 353 Query: 389 ---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG--KEKGKLVGRSPWLQSVVLNSK 443 E+L+ L + ++ F +G+ E L E+ +K VG + V + Sbjct: 354 ARSEKLIALGHDMSKE---FRKFYIGKNEEALFEEKAVIGDKEYFVGYTKEYVKVAKETA 410 Query: 444 NHNIGDIIKVRIT 456 + I+ RI+ Sbjct: 411 ENLENQIVSGRIS 423 >gi|298489930|ref|YP_003720107.1| MiaB family RNA modification protein ['Nostoc azollae' 0708] gi|298231848|gb|ADI62984.1| RNA modification enzyme, MiaB family ['Nostoc azollae' 0708] Length = 440 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 135/453 (29%), Positives = 225/453 (49%), Gaps = 35/453 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC+ N D+ M + GY + + AD +++NTC E A E+ L + Sbjct: 9 ISHLGCEKNRIDTEHMLGLLVEAGYGVDTNDELADYVIVNTCSFIEAAREESVKTLVELA 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 VV+ GC+AQ E++L P V+G Y+++ ++ER G+R Sbjct: 69 EANKK---------VVITGCLAQHFQEQLLEELPEALAVIGTGDYHKIVNVIERVEQGER 119 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V + I D R R T A+L + EGCD C FC++P+ RG + SR Sbjct: 120 VKQI------TPQPTYIADETTPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRL 263 ++ +V EA++L GV EI L+ Q + GLD K ++LL +L ++ +R+ Sbjct: 174 TIESIVAEAKQLASQGVKEIILISQITTNY---GLDIYGKPKLAELLCALGKVDVPWIRM 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P ++ +I A ++ ++PYL LP+Q IL++MNR II+ I+ Sbjct: 231 HY--AYPTGLTPDVIAAIQEIPNVLPYLDLPLQHSHPEILRAMNRPWQGRVNDTIIESIK 288 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P + + FIVGFPGET + F ++ ++ + F +SP GTP N+L Q+ Sbjct: 289 TALPSAVLRTTFIVGFPGETQEHFEHLLEFTERHEFDHVGVFTFSPEEGTPAYNLLNQLP 348 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436 + + ER L+ LQ+ + + N V +I++VLIE+ E G+L+GR SP + Sbjct: 349 QELMVERRDQLMALQQPI---SLLKNQQEVDKIVDVLIEQENPESGELIGRSGRFSPEVD 405 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 V + +G I+ V+I LYG++++ Sbjct: 406 GQVYVKGDAGLGTIVPVKIHSADAYDLYGQIIM 438 >gi|220905819|ref|YP_002481130.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 7425] gi|219862430|gb|ACL42769.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 7425] Length = 450 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 136/451 (30%), Positives = 226/451 (50%), Gaps = 33/451 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC+ N DS M + GY N AD +++NTC + A E+ L + Sbjct: 9 IAHLGCEKNRIDSEHMLGLLVQAGYSVDNDEALADYVIVNTCSFIQAAREESVRTLVELA 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 D +++ GC+AQ E++L P +VG Y+++ E++E+ G+R Sbjct: 69 E---------ADKKIIITGCMAQHFQEQLLEELPEAVALVGTGDYHKIVEVVEQVEAGQR 119 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V S E + I D R R T A+L + EGCD C FC++P+ RG + SR Sbjct: 120 V--KQISAEPTY----IADETVPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264 S+ +V EA +L GV EI L+ Q + G L G K ++LL +L ++ +R+ Sbjct: 174 SIESIVAEAEQLAAEGVQEIILISQITTNY-GLDLYG-KPKLAELLRALGKVDVPWIRMH 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y ++P ++ +I A + ++PYL LP+Q +L++MNR +I+++I++ Sbjct: 232 Y--AYPTGLTPDVIAAIKETPNVLPYLDLPLQHSHPDVLRAMNRPWQGQVNDRIMEQIKT 289 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+ + + FIVGFPGET+ F+ + V + + F +SP GTP ++ Q+ + Sbjct: 290 ALPEAVLRTTFIVGFPGETEAHFQHLCEFVQRHQFDHVGVFTFSPEEGTPAFDLPNQLSQ 349 Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437 V ER L+ LQ+ + Q+ N +G+++ VLIE+ E G+L+GR SP + Sbjct: 350 EVMEERREILMALQQPISYQK---NQQEIGRVVNVLIEQENPETGELIGRSARFSPEVDG 406 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V +G + V+IT LYG + Sbjct: 407 LVYVQGEARLGAMTLVKITAADPYDLYGHVA 437 >gi|320528896|ref|ZP_08029988.1| MiaB-like tRNA modifying enzyme YliG [Selenomonas artemidis F0399] gi|320138526|gb|EFW30416.1| MiaB-like tRNA modifying enzyme YliG [Selenomonas artemidis F0399] Length = 442 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 148/453 (32%), Positives = 234/453 (51%), Gaps = 33/453 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRIRN 89 S GC N+ D+ M + G E +AD++++NTC + A E+ + + LG Sbjct: 7 SLGCAKNLVDTEVMLGIMREHGIELTAEPAEADILIVNTCAFIQSAKEESITTVLGMADY 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + R + ++VAGC+ Q G+++L P N ++G + R+ E++E G+R+ Sbjct: 67 KETGRCRS-----LIVAGCLGQRYGQQLLDEIPEANAIIGTGAWSRIMEVVEETLKGRRL 121 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V + ED +I D R R TA++ I EGCD C FC +P RG SR+ Sbjct: 122 V---IAGEDD----TIYDANTPRLRTTPNYTAYVKIAEGCDHRCAFCAIPLIRGGFRSRA 174 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265 + +V EAR+L ++GV E+ L+ Q+ + GLD K + LL L++I+ + +R Sbjct: 175 MEDIVSEARELAESGVRELVLIAQDSANY---GLDLYRKPMLASLLRELAKIEKISWIRV 231 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 S+P+ SD LI+ ++ Y+ LP+Q D +L+SMNR T ++I ++R Sbjct: 232 LYSYPKYFSDELIEVFATEPKVVKYVDLPLQHAHDAVLRSMNRPDTRAGIERLIQKLRER 291 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P + I S FIVGFPGETD ++A D V+ + + F YS TP S M ++V E Sbjct: 292 IPGVTIRSTFIVGFPGETDTHYQALRDFVEAQRFDKLGIFTYSEEEDTPASLMRQKVPEE 351 Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRS----PWL-- 435 V ER L+ LQ K+ E+ N + + I+VLIE + +++G VGRS P + Sbjct: 352 VMQERYHDLMSLQSKISEE---INISLENKEIDVLIEGRDSEQQGIAVGRSYREAPEVDG 408 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 Q + IGDI++VR+ + GE V Sbjct: 409 QIYIEGDVGSCIGDIVRVRLLQGFTYDIVGEKV 441 >gi|301168365|emb|CBW27955.1| radical SAM-superfamily protein [Bacteriovorax marinus SJ] Length = 458 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 143/451 (31%), Positives = 240/451 (53%), Gaps = 15/451 (3%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 F S GC N+ DS M G++ V D A++IV+NTC E A ++ + + Sbjct: 12 FFTSLGCSKNLVDSQVMLGYMGLDGFKVVPEPDSAEVIVVNTCSFVEAAKQESIETILDL 71 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 + K++ ++G +VV+GC+AQ +++ P V++ +G Y ++ LL +A Sbjct: 72 ADYKDT--EQGNCKALVVSGCMAQRYSDQLEESLPEVDMFIGTGEYNKIVPLL-KALEDN 128 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 ++ + KF D N TA+L I EGC++ CTFC++P RG SRS+ Sbjct: 129 KLEKKSFVEIPKFIHTEF-DPRLNTSPFYTAWLKISEGCNRNCTFCIIPTLRGRLRSRSV 187 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +V EA+KL ++GV E+ L+ Q+++ + G LD E +LL L ++G+ +R Sbjct: 188 ESLVTEAQKLSESGVRELNLISQDLSDY-GVDLD-ENNNLHELLNGLETVEGIDWVRLFY 245 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P +++D +I+ + + YL +PVQ S+ +LK MNRR T E ++R+R P Sbjct: 246 FYPDELTDEVIEQMRNSKKICSYLDMPVQHFSNNVLKRMNRRITGAEIMNRVERLRERIP 305 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 I + + IVGFPGE+D+DF+ ++ V K + F+YS GTP + +VD+ Sbjct: 306 GIVLRTSIIVGFPGESDEDFQELLEGVKKARFNHLGIFRYSDEEGTPAYRLKGKVDQETI 365 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ-SVVLN 441 +R L + RE N GQ+I+VLIE +E +G+ +G++P + V++N Sbjct: 366 DDRFDQLFETQREIVRELNAKYEGQLIDVLIEGQHEETELLIQGRHIGQAPDIDGKVIIN 425 Query: 442 S---KNHNIGDIIKVRITDVKISTLYGELVV 469 ++ GD++KV IT+V L G +V+ Sbjct: 426 DSDIEDLKAGDLVKVEITEVLDYDLVGRVVL 456 >gi|254519172|ref|ZP_05131228.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226912921|gb|EEH98122.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 445 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 139/449 (30%), Positives = 240/449 (53%), Gaps = 31/449 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + ++ YE N +A++I++NTC E A ++ + + Sbjct: 10 SLGCDKNRVDSELILGTI-NKFYEITNDPKEAEIIIVNTCGFIESAKQESIDTILEMAEY 68 Query: 91 KNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-LERARFGKR 148 KN + K +++ GC+AQ GEE+L P +++++G Y +L +L L+ R ++ Sbjct: 69 KNKYKCK-----MLIATGCLAQRYGEELLELMPEIDILMGVNDYMKLHKLILDFIRGERK 123 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ T+YS E+ E + ++ + TA++ I EGCD +CT+C++P RG SRS Sbjct: 124 LLATNYSDENINEGIRLLTTDKH-----TAYVRIAEGCDNYCTYCIIPKIRGKFRSRSKE 178 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRYTT 267 +++E L+ NGV EI L+ Q++ + G+D K +L+ +S + G+ +R Sbjct: 179 AILEEVETLVKNGVKEIILIAQDLTYY---GMDIYKENKLHELVREISNVTGVEWIRLLY 235 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P ++++ LI+ ++ YL LP+Q S+ ILK M RR IID++R P Sbjct: 236 CYPEEITEDLIEEMAMNPKVVKYLDLPIQHISNNILKRMARRTNKETITNIIDKLRERIP 295 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 IA+ + IVGFPGET++DF + +++ FKYS GTP ++M QV+E K Sbjct: 296 GIALRTSLIVGFPGETEEDFNELCEFLEEYKLDNVGVFKYSKEEGTPAADMENQVEEETK 355 Query: 388 A---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440 E+L+ +QKK+ E+ N + ++ + +IE G+ +GRS P + +L Sbjct: 356 EKRQEKLMLVQKKVVEE---LNKLKISKVYDTIIE--GRRGKYFIGRSSEMAPEIDGNIL 410 Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGEL 467 + N+ GDI+K++I + L GE+ Sbjct: 411 VNTTRNLEKGDIVKIKIKEALEYDLVGEI 439 >gi|322382319|ref|ZP_08056226.1| AdoMet radical enzyme-like protein for tRNA modification [Paenibacillus larvae subsp. larvae B-3650] gi|321153672|gb|EFX46047.1| AdoMet radical enzyme-like protein for tRNA modification [Paenibacillus larvae subsp. larvae B-3650] Length = 442 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 139/450 (30%), Positives = 240/450 (53%), Gaps = 25/450 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V + GC+ N+ DS M + +G+ V+ ++A +I++NTC + A E+ + + Sbjct: 7 VVTLGCEKNLVDSEIMGGLINERGFSLVDQAEEATVIIVNTCGFIDAAKEESINTI---- 62 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L + +K+ L ++V+GC+ Q EE+++ P ++ +VG ++++ +++++A GK Sbjct: 63 -LDMAELKQTAHLKALIVSGCLTQRYKEELMKELPEIDGIVGTGDFHKINDIIDQALNGK 121 Query: 148 RVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + + ++ E R I Y TA++ I EGCD CTFC +P RG S Sbjct: 122 KPILVGNPVFNYEAALPR-RITTPRY------TAYVKIAEGCDNNCTFCSIPIMRGKFRS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263 RS+ ++ E R+L + GV EI+L+ Q+ + G+D + +LL +S I+G+ + Sbjct: 175 RSMESILAEVRQLSEQGVKEISLIAQDSTNY---GIDLYDSYVLPELLNKVSAIEGIEWV 231 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++P +D LI+ + Y+ LP+Q D +LK M R + R++I +IR Sbjct: 232 RLHYAYPGFFTDELIETIATNPKICKYIDLPLQHSEDSVLKRMRRPGRQKDARELIRKIR 291 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S PD A+ + IVGFPGET++DF++ +D V +I + + F YS TP S + +Q+ Sbjct: 292 SRIPDAALRTSIIVGFPGETEEDFQSLVDFVKEINFDRLGVFTYSREQDTPASRLPDQIP 351 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ-SV 438 ++VK R L + R+ N +G I VLIE++ +GRS P + V Sbjct: 352 DDVKEYRANVLMEVQRQISHERNGKRIGMEIPVLIERYDGRNDVFIGRSQFDAPEIDGEV 411 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +++K IG I +VRIT L GE+V Sbjct: 412 FVSAKRLEIGRIARVRITHSFEFDLSGEVV 441 >gi|42525237|gb|AAS18318.1| CDK5 regulatory subunit associated protein 1 transcript variant 4 [Homo sapiens] Length = 426 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 112/339 (33%), Positives = 195/339 (57%), Gaps = 26/339 (7%) Query: 17 IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 ++D+ + QR ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREK Sbjct: 91 MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A + +++ L +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 LP LL A G++ + S+++ + + V + +AF++I GCD C++C+V Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------GKGL 240 P+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R +G Sbjct: 268 PFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGF 327 Query: 241 DGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 T F+ LL +S + +R+R+T+ HP+D D +++ + D + +HLP Sbjct: 328 TTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLP 387 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIR-SVRPDIAIS 332 QSGS R+L++M R ++ Y +++ IR S+ D IS Sbjct: 388 AQSGSSRVLEAMRRGYSREAYVELVHHIRESIPEDTGIS 426 >gi|225028441|ref|ZP_03717633.1| hypothetical protein EUBHAL_02715 [Eubacterium hallii DSM 3353] gi|224954239|gb|EEG35448.1| hypothetical protein EUBHAL_02715 [Eubacterium hallii DSM 3353] Length = 465 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 144/465 (30%), Positives = 227/465 (48%), Gaps = 41/465 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N+ DS +M + GY +AD IV+NTC I + E V + L Sbjct: 8 SLGCDKNLVDSEKMLGLLNEAGYRVAQEESEADAIVVNTCCFIHDAKEESVETILEMAEW 67 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K R+K ++V GC+AQ +EI + P V+ V+G Y + +L+ Sbjct: 68 KKKGRLK-----ALIVTGCMAQRYQDEIQQEIPEVDAVIGTTGYTEIVPILDEILAEAEA 122 Query: 150 VDTDYSVEDKFER--------LSIVDGGYNRKR-----GVTAFLTIQEGCDKFCTFCVVP 196 + +VE+ E+ + ++ KR G TA+L I EGC+K CT+C++P Sbjct: 123 SQKEAAVEEPKEKSFVNCCPSIDLLPASLADKRVVTTGGYTAYLKIAEGCNKRCTYCIIP 182 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSL 254 Y RG S + +++EARKL + GV E+ L+ Q + G+D G K +LL L Sbjct: 183 YIRGHYRSFPMEDLLEEARKLAEGGVKELILIAQETTVY---GMDCYGRK-ALPELLTKL 238 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 EI+G+ +R +P +++D LI + YL +P+Q D ILK M RR E Sbjct: 239 CEIEGIEWIRILYCYPEEITDELIAVMKKEKKICHYLDIPIQHSEDTILKRMGRRTNRAE 298 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +++++R PDI + + I GFPGET+++F+ +D VD + + + F YS GT Sbjct: 299 LVSLVEKLRKEIPDIVLRTTLITGFPGETEEEFKNMVDFVDSMEFDRLGVFPYSAEEGTK 358 Query: 375 GSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLV 429 + M Q+ E VK R ++ LQ Q++S + A + + VLIE + E + Sbjct: 359 AAEMDGQITEEVKESRRDEIMALQ-----QEISADKAASRIDDEMSVLIEGYLYEDDIYI 413 Query: 430 GRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 GR+ P + V + GDI+ VRIT L G+++ Sbjct: 414 GRTYMDAPKVDGNVFVRAEEELISGDIVPVRITGANEYDLMGDVI 458 >gi|17228717|ref|NP_485265.1| hypothetical protein alr1222 [Nostoc sp. PCC 7120] gi|81853061|sp|Q8YXJ1|RIMO_NOSS1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|17130569|dbj|BAB73179.1| alr1222 [Nostoc sp. PCC 7120] Length = 440 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 141/452 (31%), Positives = 223/452 (49%), Gaps = 35/452 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC+ N D+ M + GY + + AD +++NTC E A E+ L + Sbjct: 9 ISHLGCEKNRIDTEHMLGLLVKAGYGVDTNEELADYVIVNTCSFIESAREESVRTLVELA 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +V+ GC+AQ ++L P VVG Y+++ ++ERA G+R Sbjct: 69 EANKK---------IVITGCMAQHFQTQLLEELPEAVAVVGTGDYHKIVSVIERAEQGER 119 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V T S E + I D R R T A+L + EGCD C FC++P+ RG + SR Sbjct: 120 V--TLVSAEPTY----IADETTPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRL 263 ++ +V EA +L+ GV EI L+ Q + GLD K ++LL +L +I +R+ Sbjct: 174 TIESIVAEAEQLVAQGVQEIILISQITTNY---GLDIYGKPKLAELLRALGKINVPWIRM 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P ++ +I A + ++PYL LP+Q +L+SMNR +II+R++ Sbjct: 231 HY--AYPTGLTPDVIAAIQETPNVLPYLDLPLQHSHSEVLRSMNRPWQGRVNDEIIERLK 288 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P + + FIVGFPGET+ F + V + + F +S GTP + Q+ Sbjct: 289 IAIPGAVLRTTFIVGFPGETEAQFEHLLQFVQRHEFDHVGVFTFSAEEGTPAYKLPNQLP 348 Query: 384 ENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436 + V E RL+ LQ+ + ++ N VG+ +EVLIE+ E GKL+GR SP + Sbjct: 349 QEVMDERRDRLMALQQPISWRK---NQQEVGKTVEVLIEQENPESGKLIGRSGRFSPEVD 405 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V +G II V+I L+G++V Sbjct: 406 GQVYVDGEAKLGTIIPVKIHSADEYDLFGQVV 437 >gi|22299107|ref|NP_682354.1| hypothetical protein tlr1564 [Thermosynechococcus elongatus BP-1] gi|81844879|sp|Q8DIL8|RIMO_THEEB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|22295289|dbj|BAC09116.1| tlr1564 [Thermosynechococcus elongatus BP-1] Length = 446 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 138/446 (30%), Positives = 215/446 (48%), Gaps = 37/446 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC N D+ M + + GY +AD +++NTC + A E+ L + Sbjct: 15 GCDKNRVDTEHMIGLLAAAGYGVGTDETEADYVIVNTCSFIQAAREESVRTLVELAEANK 74 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD- 151 +V+ GC+AQ E+L P VVG Y + E++ER G+RV Sbjct: 75 K---------IVITGCLAQHFQGELLAELPEAVAVVGSGDYQHIVEVIERVERGERVQQI 125 Query: 152 ---TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 Y ++ R Y A+L I EGCD C FC++P+ RG + SRSL Sbjct: 126 SAVPTYIADETVPR-------YRTTPAPVAYLRIAEGCDYRCAFCIIPHLRGNQRSRSLE 178 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIK-GLVRLRYT 266 +V EA +L GV EI ++ Q + GLD + + L+ +L E+ +RL Y Sbjct: 179 SIVSEAHQLAAEGVQEIIIVSQITTNY---GLDRYGQPQLATLIRALGEVDVPWIRLHY- 234 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P ++ +I A + ++PYL LP+Q +L++MNR A ++I+R+R Sbjct: 235 -AYPTGLTPEVIAAMRETPNILPYLDLPLQHSHPEVLRAMNRPWQAGVNDRLIERLRQEL 293 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P+ + + FIVGFPGET+ F V + + F YSP GT ++ Q+ E + Sbjct: 294 PEAVVRTTFIVGFPGETESQFEHLCQFVQRHEFDHVGVFTYSPEEGTAAYDLPHQIPEEI 353 Query: 387 K---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VV 439 K +RL+ LQ+ + +++ N A VG+I+ VLIE+ + G+ +GRSP VV Sbjct: 354 KRARRDRLMELQQPIAQRK---NAAEVGKIVPVLIEQENPQTGEFIGRSPRFAPEVDGVV 410 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465 +G I+ V IT I LYG Sbjct: 411 YVKGAATLGTIVPVEITAADIYDLYG 436 >gi|291539696|emb|CBL12807.1| MiaB-like tRNA modifying enzyme [Roseburia intestinalis XB6B4] Length = 435 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 129/396 (32%), Positives = 218/396 (55%), Gaps = 29/396 (7%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+ + + GYE V + AD+ V+NTC + A K R + + Sbjct: 10 GCKVNAYETEAMQQILENAGYEIVPFTEIADVYVINTCSVTNMADRKSRQMFHRAKKM-- 67 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK-R 148 D +VV AGC Q + + L I ++V+G + L LL E+ + + Sbjct: 68 -----NPDAIVVGAGCYVQTKEAQALVDESI-DIVIGNNQKHELVTLLNEYEKEHTKQAQ 121 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 +VD ++ ++ +E L + + + AF+ +Q+GC++FC++C++P+ RG SR + Sbjct: 122 IVDINHEKQE-YEELHLKKTAEHTR----AFIKVQDGCNQFCSYCIIPFARGRVRSRKME 176 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 V++E +L +G E+ L G +++++ G+D GE T L+ + EI+G+ R+R + Sbjct: 177 DVLNEINELAKSGYKEVVLTGIHLSSY---GVDTGE--TLLSLIEHVHEIEGIERIRLGS 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 PR +++ K +L + P+ HL +QSG D +LK MNRR+ EY D +R Sbjct: 232 LEPRIVTEDFAKRLSELTKICPHFHLSLQSGCDSVLKRMNRRYDTAEYEAGCDLLRKYFT 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 AI++D IVGFPGET+++F+ T + + KI + + FKYS R GT + M +QV E K Sbjct: 292 HPAITTDVIVGFPGETEEEFKITEEYLKKIHFYEMHIFKYSVREGTKAAVMPDQVSEQKK 351 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 ER LL L+KK+ E+ F + VG+ L+E+ Sbjct: 352 TERSNILLSLEKKMSEE---FRNYYVGKEKTALLEE 384 >gi|260891278|ref|ZP_05902541.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia hofstadii F0254] gi|260858954|gb|EEX73454.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia hofstadii F0254] Length = 306 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 106/299 (35%), Positives = 178/299 (59%), Gaps = 8/299 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + +YGCQMNV +S +M+ M + GY+ +++ DL+ LNTC +RE AA KVY L Sbjct: 3 KRATIITYGCQMNVNESAKMKQMLQTMGYQMTEDIENTDLVFLNTCTVREGAAVKVYGKL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++ +K + G +++ V GC+AQ +E ++++P V++V+G Q R+P++LER Sbjct: 63 GDLKRIKEEK---DGKMIIGVTGCLAQEVRDEFIKKTPYVDLVLGNQNIGRIPDILERIE 119 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V+D+ E + VD + + A ++I GC+ +CTFC+VPY RG+E S Sbjct: 120 SGEET--HIVMVDDEDELPTRVDADFGDD--IVASISITYGCNNYCTFCIVPYVRGMERS 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 L+++V + + G EI LGQNVN++ +G+ F++LL + ++G ++ Sbjct: 176 VPLNEIVSDVEQYTKKGYKEILFLGQNVNSYGSDFANGQD-NFAELLEESANVEGDFWIK 234 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y + HP+D SD +I + LHLP+QSGS +IL +MNR +T E+ + ++R Sbjct: 235 YVSPHPKDFSDEVIDTIARNPKIARMLHLPLQSGSTKILDAMNRGYTKEEFIALAKKLR 293 >gi|255659775|ref|ZP_05405184.1| RNA modification enzyme, MiaB family [Mitsuokella multacida DSM 20544] gi|260847845|gb|EEX67852.1| RNA modification enzyme, MiaB family [Mitsuokella multacida DSM 20544] Length = 455 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 141/438 (32%), Positives = 222/438 (50%), Gaps = 29/438 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M + G E + +AD++++NTC + A E+ + + L Sbjct: 7 SLGCSKNLVDTEVMLGILKQHGIELTANPAEADILIVNTCAFIQSAKEESITTI-----L 61 Query: 91 KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + KE G ++VAGC+ Q +E+L P + ++G + R+ E +E G RV Sbjct: 62 NMAEYKESGRCRSLIVAGCLGQRYKQELLDEIPEADAIIGTGAWGRIMEAVEETLKGHRV 121 Query: 150 V--DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 V D ++ D+ Y TA++ I EGC+ C FC +PY RG SR + Sbjct: 122 VIAGKDEALYDENTPRITTTPSY------TAYVKIAEGCNNRCAFCAIPYIRGDYRSRRI 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + DE R L +NGV E+ L+ Q+ + G+ L G S+LL + ++ L +R Sbjct: 176 EDICDEVRHLTENGVREVVLIAQDSTEY-GRDLYGAP-KLSELLREIVKVPKLQWVRTLY 233 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 S+P+ SD LI+ + Y+ LP+Q D +L+SM R T E R +I ++R P Sbjct: 234 SYPKYFSDELIETIASEPKICKYVDLPLQHAHDAVLRSMRRPDTQEEMRALIKKLRERIP 293 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + I S FIVGFPGETD + + ++++ + F YS GTP +M QV E + Sbjct: 294 GVTIRSTFIVGFPGETDAQYHTLRNFIEEMRLDKVGVFTYSREEGTPAYDMPNQVPEEIM 353 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRS----PWL--QS 437 ER L+ LQ K+ EQ N + G+ ++VL+E +E+ + VGRS P + Q Sbjct: 354 QERYHDLMSLQCKISEQ---INQSLEGKELDVLVEGRDEEQPNISVGRSYREAPEVDGQV 410 Query: 438 VVLNSKNHNIGDIIKVRI 455 V N + GDI++VR+ Sbjct: 411 YVENDTDSKPGDIVRVRV 428 >gi|167630503|ref|YP_001681002.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1] gi|167593243|gb|ABZ84991.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1] Length = 446 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 133/391 (34%), Positives = 205/391 (52%), Gaps = 15/391 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + MF ++GY V AD+ V+NTC + + K + R N Sbjct: 12 TLGCKVNQGETDAIAGMFKARGYAIVPFDAPADVYVVNTCTVTHLSDRKSRQAI-RKANR 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N D +VVV GC AQ +E+ + V++VVG + +L+E R V Sbjct: 71 QNP------DAVVVVTGCYAQTAADEV-QAIEGVDIVVGTDRRSAIVDLVEEHRRSGETV 123 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +T Y + ER + R R A + IQ+GCD +CT+C++PY RG SR + V Sbjct: 124 NTVYD-SCRIERFEELPAAPERSRA-RATIKIQDGCDLYCTYCIIPYARGPVRSRRIESV 181 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V+EA +L G EI L G ++ A+ G + + + L+ L I GL R+R + P Sbjct: 182 VEEATRLTGEGFKEIVLSGIHLGAY-GSDFNAD---LAKLIVELCRIPGLRRIRVGSVEP 237 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++ + L++A V P+ H+P+QSGSD +L+ M RR+ ++ + +I+ + P +A Sbjct: 238 QEFTPELLEAVVHPRVC-PHFHIPLQSGSDAVLERMGRRYRRQDFLDVTRKIQQMIPGVA 296 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I+SD IVGFPGE + D+ + +L G A F YSPR GTP + +Q+ VK ER Sbjct: 297 ITSDVIVGFPGEREADYLLSEELCRATGLAGLHVFPYSPRRGTPAATFPDQIPSAVKQER 356 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 L K RE + VGQI EVL E+ Sbjct: 357 AQRLAKLARELASDYAKGFVGQIREVLAEEQ 387 >gi|164688504|ref|ZP_02212532.1| hypothetical protein CLOBAR_02149 [Clostridium bartlettii DSM 16795] gi|164602917|gb|EDQ96382.1| hypothetical protein CLOBAR_02149 [Clostridium bartlettii DSM 16795] Length = 445 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 130/446 (29%), Positives = 236/446 (52%), Gaps = 31/446 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++S GC N+ D+ M + +GY+ + ++AD+I++NTC E A ++ + Sbjct: 3 KIALESLGCSKNLVDAEIMMGILNEKGYKLTGNFEEADVILVNTCGFIESAKQESIQTI- 61 Query: 86 RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 L+ + +KE +L L++V GC+AQ +E+ P ++ +VG +Y + E+L Sbjct: 62 ----LEFAELKETANLKLLIVTGCLAQRYADELKEEIPEIDAIVGTGSYQNIDEILAELS 117 Query: 145 FGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 ++V + +++ ++ R Y A+L I EGCD CT+C++P RG Sbjct: 118 EKHQIVSLNNIEFAYDENLPR-------YVSTPSHMAYLKIGEGCDNKCTYCIIPKLRGK 170 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 SR + ++ EA+KL + GV E+ ++ Q+ + G L GE+ ++LL L++I+G Sbjct: 171 YRSRKMEDIIAEAKKLAERGVKELVVIAQDTTKY-GLDLYGEE-KLANLLEELAQIEGFK 228 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R S+P +++ L+K D + Y +P+Q S+R+LK MNR+ T + I+ Sbjct: 229 WIRVMYSYPESITEELVKVIKKYDNICNYFDMPIQHASNRVLKLMNRKTTKEDILSKINM 288 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IRS D + + IVGFPGET++DF + + + + + F YS TP + Sbjct: 289 IRSHISDATLRTSIIVGFPGETEEDFNELAEFIKEAQFDKLGVFTYSREEDTPADKLPNH 348 Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW---- 434 ++E VK ER L+ +Q+ + E++ N+ +G EVL+E+ E VGR+ + Sbjct: 349 LEEEVKVERQEALMMIQQGISEEK---NNNKIGNKYEVLVEEQ-IEDNVYVGRTIYDAEE 404 Query: 435 LQSVVL--NSKNHNIGDIIKVRITDV 458 + ++V + +N +G+ + V ITD Sbjct: 405 IDAIVYVKSIRNLQVGEFVNVVITDA 430 >gi|330903345|gb|EGH33917.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 169 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 92/169 (54%), Positives = 123/169 (72%) Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234 G +A++++ EGC K+CTFCVVPYTRG E+SR V+ E L +NGV E+TLLGQNVN Sbjct: 1 GPSAYVSVMEGCSKYCTFCVVPYTRGEEVSRPFDDVLSEVIHLAENGVREVTLLGQNVNG 60 Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 +RG DG +DL+ ++ + G+ R+RYTTSHP + SD LI+AH ++ L+ +LHLP Sbjct: 61 YRGTTHDGRVADLADLIRVVAAVDGIDRIRYTTSHPLEFSDSLIQAHAEVPELVKHLHLP 120 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343 VQSGSDRIL +M R HT EY+ + ++R+ P I+ISSDFIVGFPGET Sbjct: 121 VQSGSDRILAAMKRNHTTLEYKSRLRKLRAAVPGISISSDFIVGFPGET 169 >gi|238924259|ref|YP_002937775.1| MiaB-like tRNA modifying enzyme [Eubacterium rectale ATCC 33656] gi|238875934|gb|ACR75641.1| MiaB-like tRNA modifying enzyme [Eubacterium rectale ATCC 33656] Length = 434 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/395 (32%), Positives = 208/395 (52%), Gaps = 26/395 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+ + GYE V AD+ V+NTC + A K L + + Sbjct: 10 GCKVNAYETEAMQHLLEEAGYEIVPFTQKADVYVINTCSVTNMADRKSRQMLHKAK---- 65 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 K D +VV AGC Q +E+L V++V+G + L LLE V DT Sbjct: 66 ---KNNPDSIVVAAGCYVQTSEKEVLNDLS-VDIVIGNDRKHDLVRLLEEYSLDS-VNDT 120 Query: 153 DYSVED---KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + D FE L I K AF+ +Q+GC++FC++C++PY RG SR Sbjct: 121 VDDINDGKHDFEELFID----QTKEHTRAFIKVQDGCNQFCSYCIIPYARGRVRSRRFEN 176 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTS 268 V+ E +L NG E+ L G +++++ G+D E+ +L+ +++ +KG+ R+R + Sbjct: 177 VIAEVERLAANGFKEVVLTGIHLSSY---GVDFEEAVGLLELIQAVNAVKGIERIRLGSL 233 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P+ +++ LD + P+ HL +QSG D LK MNR++T EY + + +R Sbjct: 234 EPKIVTEHFASELSKLDKICPHFHLSLQSGCDATLKRMNRKYTTKEYERGCELLRKYFVH 293 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 AI++D IVGFPGET+++F T ++ I + + FKYS R GT + M +Q+DE +KA Sbjct: 294 PAITTDVIVGFPGETEEEFEQTKAYLEHIHFYEMHIFKYSKRKGTRAAVMPDQIDEQIKA 353 Query: 389 ---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 E+L+ L + ++ F +G+ E L E+ Sbjct: 354 ARSEKLIALGHDMSKE---FRKFYIGKNEEALFEE 385 >gi|167037606|ref|YP_001665184.1| MiaB-like tRNA modifying protein YliG [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116021|ref|YP_004186180.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389420|ref|ZP_08210987.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter ethanolicus JW 200] gi|238064962|sp|B0K9N5|RIMO_THEP3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|166856440|gb|ABY94848.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929112|gb|ADV79797.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325994425|gb|EGD52850.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter ethanolicus JW 200] Length = 436 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 132/446 (29%), Positives = 230/446 (51%), Gaps = 28/446 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS +M + +GY VN + AD++++NTC E A + ++ + L Sbjct: 8 SLGCPKNTVDSEKMLAILKEKGYNIVNDKNKADILIINTCGFIEDAKRESIEYIIEMGKL 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 KN R+K ++ GC+++ +E+L+ P ++ V+G + ++ E++E GK V+ Sbjct: 68 KNRRLK-----YLIATGCLSERYNKELLKELPELDAVIGTGDFPKIAEVIEEIEKGKTVL 122 Query: 151 DTDYSV---EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + ++ ++ +R+ Y A+L I EGC C+FC++P RG SR + Sbjct: 123 EYGHANLLNDEGIQRILTTPNYY-------AYLKIAEGCSNACSFCIIPKIRGRYRSRKM 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 ++ EA +L+ G E+ L+ Q+ + G+D +K LL +S+I GL +R Sbjct: 176 EDILREAEELVKKGAKELILIAQDTTKY---GVDVYKKFMLPQLLKEISKIDGLKWIRLL 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P +++ L++ + + ++ Y+ +P+Q D +LK MNR + ++I R+RS+ Sbjct: 233 YAYPDSVTEELVEEIKNNEKIVKYIDIPLQHSHDEVLKRMNRNTNRQKIEEVISRLRSI- 291 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P++ I + F+VGFPGET+++F + + + + F YS GT M Q+ ++V Sbjct: 292 PNMVIRTTFMVGFPGETEEEFEDLKQFIKEKRFERVGVFTYSREEGTKSYYMKPQIKKSV 351 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNS 442 K +R L + +E N + VG+ +EVLIE G E G GRS P + VV Sbjct: 352 KIKRQQELMEIQKEISYQHNLSKVGKQLEVLIE--GFEDGIYYGRSYMDAPEIDGVVYVK 409 Query: 443 KNHNI--GDIIKVRITDVKISTLYGE 466 N + GD + ITD L GE Sbjct: 410 SNKKLKAGDFVVATITDAYEYDLVGE 435 >gi|291535169|emb|CBL08281.1| MiaB-like tRNA modifying enzyme [Roseburia intestinalis M50/1] Length = 435 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/396 (32%), Positives = 218/396 (55%), Gaps = 29/396 (7%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+ + + GYE V + AD+ V+NTC + A K R + + Sbjct: 10 GCKVNAYETEAMQQILENAGYEIVPFTEIADVYVINTCSVTNMADRKSRQMFHRAKKM-- 67 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK-R 148 D +VV AGC Q + + L I ++V+G + L LL E+ + + Sbjct: 68 -----NPDAIVVGAGCYVQTKEAQALVDESI-DIVIGNNQKHELVTLLNEYEKEHTKQAQ 121 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 +VD ++ ++ +E L + + + AF+ +Q+GC++FC++C++P+ RG SR + Sbjct: 122 IVDINHEKQE-YEELHLKKTAEHTR----AFIKVQDGCNQFCSYCIIPFARGRVRSRKME 176 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 V++E + L +G E+ L G +++++ G+D GE T L+ + EI+G+ R+R + Sbjct: 177 DVLNEIKGLAKSGYKEVVLTGIHLSSY---GVDTGE--TLLSLIEHVHEIEGIERIRLGS 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 PR +++ K +L + P+ HL +QSG D +LK MNRR+ EY D +R Sbjct: 232 LEPRIVTEDFAKRLSELTKICPHFHLSLQSGCDSVLKRMNRRYDTAEYEAGCDLLRKYFT 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 AI++D IVGFPGET+++F+ T + + KI + + FKYS R GT + M +QV E K Sbjct: 292 HPAITTDVIVGFPGETEEEFKITEEYLKKIHFYEMHIFKYSVREGTKAAVMPDQVPEQKK 351 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 ER LL L+KK+ E+ F + VG+ L+E+ Sbjct: 352 TERSNILLSLEKKMSEE---FRNYYVGKEKTALLEE 384 >gi|300024819|ref|YP_003757430.1| MiaB-like tRNA modifying enzyme [Hyphomicrobium denitrificans ATCC 51888] gi|299526640|gb|ADJ25109.1| MiaB-like tRNA modifying enzyme [Hyphomicrobium denitrificans ATCC 51888] Length = 419 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 142/446 (31%), Positives = 224/446 (50%), Gaps = 41/446 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V + GC++N Y+S M G +DDA I++NTC + +A + + R+R Sbjct: 6 VITLGCRLNAYESEVMRRHAQDAG------LDDA--IIVNTCAVTGEAVRQASQTIRRLR 57 Query: 89 NLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLE 141 K N+RI +V GC AQ E + P V+ VVG +T+ L + Sbjct: 58 RDKPNARI--------IVTGCAAQTEAQRFAD-MPEVDHVVGNGEKMLAETFAGL-SIAS 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 AR V+ +V ++ + ++G +R R A++ IQ GCD CTFC++P+ RG Sbjct: 108 SARVQ---VNDIMAVREQASHM--IEGFGSRTR---AYVAIQNGCDHRCTFCIIPFGRGP 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S +VV + R+L+ NG EI L G ++ ++ G+ L G + L + L Sbjct: 160 SRSVPAGEVVTQVRRLVANGYAEIVLTGVDITSY-GRDLPGVATLGKLVRQVLKHVPDLA 218 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ + + L+ A G+ + LMP+LHL +Q+G D LK M RRH+ + +R Sbjct: 219 RLRLSSIDQVEADEDLMIALGEEERLMPHLHLSMQAGDDMTLKRMKRRHSRADAIMFCER 278 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R++RPD+ +D I GFP ETD F ++ +VD+ G F +SPR GTP + M Q Sbjct: 279 ARTLRPDVVFGADLIAGFPTETDAMFENSLKIVDECGLTYLHVFPFSPRRGTPAARM-PQ 337 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V N+ ER L+ + + S+ A G+ ++VL+E G +GR+P V + Sbjct: 338 VPGNIVKERAAELRARGQAVLTSYLAAQQGRTVDVLLESDG------MGRTPQFAEVDMR 391 Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467 S G+I+ IT + L GE+ Sbjct: 392 SSGAKAGEIVHAVITGASSTRLIGEV 417 >gi|75906864|ref|YP_321160.1| hypothetical protein Ava_0641 [Anabaena variabilis ATCC 29413] gi|123758912|sp|Q3MFH1|RIMO_ANAVT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|75700589|gb|ABA20265.1| SSU ribosomal protein S12P methylthiotransferase [Anabaena variabilis ATCC 29413] Length = 440 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 143/452 (31%), Positives = 226/452 (50%), Gaps = 35/452 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC+ N D+ M + GY + + AD +++NTC E A E+ L + Sbjct: 9 ISHLGCEKNRIDTEHMLGLLVKAGYGVDTNEELADYVIVNTCSFIESAREESVKTLVELA 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 N +I V+ GC+AQ ++L P VVG Y+++ ++ERA G+R Sbjct: 69 E-ANKKI--------VITGCMAQHFQTQLLEELPEAVAVVGTGDYHKIVNVIERAEQGER 119 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V T S + + I D R R T A+L + EGCD C FC++P+ RG + SR Sbjct: 120 V--TLVSAKPTY----IADETTPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRL 263 ++ +V EA +L+ GV EI L+ Q + GLD K ++LL +L +I +R+ Sbjct: 174 TIESIVAEAEQLVAQGVQEIILISQITTNY---GLDIYGKPKLAELLRALGKINVPWIRM 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P ++ +I A + ++PYL LP+Q +L+SMNR +II+R++ Sbjct: 231 HY--AYPTGLTPDVIAAIQETPNVLPYLDLPLQHSHSEVLRSMNRPWQGRVNDEIIERLK 288 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLE 380 P + + FIVGFPGET+ F + V + + F +S GTP SN L Sbjct: 289 IAIPGAVLRTTFIVGFPGETEAQFEHLLQFVQRHEFDHVGVFTFSAEEGTPAYKLSNQLP 348 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436 Q + + +RL+ LQ+ + ++ N VG+ +EVLIE+ E GKL+GR SP + Sbjct: 349 QEVMDERRDRLMALQQPISWRK---NQQEVGKTVEVLIEQENPESGKLIGRSGRFSPEVD 405 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V +G II V+I L+G++V Sbjct: 406 GQVYVDGEAKLGTIIPVKIHSADEYDLFGQVV 437 >gi|240145918|ref|ZP_04744519.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis L1-82] gi|257201983|gb|EEV00268.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseburia intestinalis L1-82] Length = 435 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 129/396 (32%), Positives = 218/396 (55%), Gaps = 29/396 (7%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+ + + GYE V + AD+ V+NTC + A K R + + Sbjct: 10 GCKVNAYETEAMQQILENAGYEIVPFTEIADVYVINTCSVTNMADRKSRQMFHRAKKM-- 67 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK-R 148 D +VV AGC Q + + L I ++V+G + L LL E+ + + Sbjct: 68 -----NPDAIVVGAGCYVQTKEAQALVDESI-DIVIGNNQKHELVTLLNEYEKEHTKQAQ 121 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 +VD ++ ++ +E L + + + AF+ +Q+GC++FC++C++P+ RG SR + Sbjct: 122 IVDINHEKQE-YEELHLKKTAEHTR----AFIKVQDGCNQFCSYCIIPFARGRVRSRKME 176 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 V++E + L +G E+ L G +++++ G+D GE T L+ + EI+G+ R+R + Sbjct: 177 DVLNEIKGLAKSGYKEVVLTGIHLSSY---GVDTGE--TLLSLIEHVHEIEGIERIRLGS 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 PR +++ K +L + P+ HL +QSG D +LK MNRR+ EY D +R Sbjct: 232 LEPRIVTEDFAKRLSELTKICPHFHLSLQSGCDSVLKRMNRRYDTAEYEAGCDLLRKYFT 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 AI++D IVGFPGET+++F+ T + + KI + + FKYS R GT + M +QV E K Sbjct: 292 HPAITTDVIVGFPGETEEEFKITEEYLKKIHFYEMHIFKYSMREGTKAAVMPDQVPEQKK 351 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 ER LL L+KK+ E+ F + VG+ L+E+ Sbjct: 352 TERSNILLSLEKKMSEE---FRNYYVGKEKTALLEE 384 >gi|312136430|ref|YP_004003767.1| RNA modification enzyme, miab family [Methanothermus fervidus DSM 2088] gi|311224149|gb|ADP77005.1| RNA modification enzyme, MiaB family [Methanothermus fervidus DSM 2088] Length = 427 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 138/453 (30%), Positives = 249/453 (54%), Gaps = 40/453 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGC N DS + + + + V+S+D+AD+I+LNTC++++ K+ + Sbjct: 2 KVYIETYGCTYNKADSQIIAGILEKENIKVVDSIDEADVIILNTCYVKQPTEHKI---IN 58 Query: 86 RIRNLKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 RIR L+N+ + KE ++VAGC+ + + E++ + +P + +GP ++ PE+++ Sbjct: 59 RIRELQNTYKSKE-----LIVAGCMVEIDPEKLKKIAP-ESAWLGPHKLHKAPEVVKSVI 112 Query: 145 FG--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G K+V D ++ V+ R + I EGC C++C + RG Sbjct: 113 NGNKKKVYGKDSKIK--------VEMPKKRFNSHIHIVQICEGCLGNCSYCCTRFARGRL 164 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S L +V + +K I++G EI L Q+ A+ G+ + C L+ ++ + G + Sbjct: 165 YSYPLDSIVKDVKKAIEDGCVEIQLTAQDTAAY-GRDIG---CDLPTLINKITSLDGKFK 220 Query: 263 LRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +R HP+++ D L+ A+ D + + +LHLPVQSGSD++L+ MNR + ++++I+ Sbjct: 221 IRVGMMHPKNVKKILDELVDAY-DSEKIYKFLHLPVQSGSDKVLRDMNRGYKVKDFKKIV 279 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R P+I+I++D IVGFP E+ +DF+ T +L+++I S +Y+ R G S L Sbjct: 280 RKFRKKIPEISIATDIIVGFPTESREDFKKTCELLNEIKPNFIHSSRYAHRPGAKSSK-L 338 Query: 380 EQVDENVKAERLLCLQ----KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 +++D N ER ++ K +RE+ N VG +VLI + GK KG +GR+ Sbjct: 339 DELDHNEVKERSRIIEEIKNKIMREE----NKKLVGTEQKVLIVEKGK-KGGYIGRTSSY 393 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V++NS G+IIKV+I + + L G+ V Sbjct: 394 IPVIVNSGKP--GEIIKVKIKEATSTYLKGDAV 424 >gi|307264932|ref|ZP_07546494.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter wiegelii Rt8.B1] gi|306920190|gb|EFN50402.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter wiegelii Rt8.B1] Length = 436 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 132/446 (29%), Positives = 229/446 (51%), Gaps = 28/446 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS +M + +GY VN + AD++++NTC E A + ++ + L Sbjct: 8 SLGCPKNTVDSEKMLAILKEKGYNIVNDKNKADILIINTCGFIEDAKRESIEYIIEMGKL 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 KN R+K ++ GC+++ +E+L+ P ++ V+G + ++ E++E GK V+ Sbjct: 68 KNRRLK-----YLIATGCLSERYNKELLKELPELDAVIGTGDFPKIAEVIEEIEKGKTVL 122 Query: 151 DTDYSV---EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + ++ ++ +R+ Y +L I EGC C+FC++P RG SR + Sbjct: 123 EYGHANLLNDEGIQRILTTPNYY-------TYLKIAEGCSNACSFCIIPKIRGRYRSRKM 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 ++ EA +L+ G E+ L+ Q+ + G+D +K LL +S+I GL +R Sbjct: 176 EDILREAEELVKKGAKELILIAQDTTKY---GVDVYKKFMLPQLLKEISKIDGLKWIRLL 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P +++ L++ + + ++ Y+ +P+Q D +LK MNR + ++I R+RS+ Sbjct: 233 YAYPDSVTEELVEEIKNNEKIVKYIDIPLQHSHDEVLKRMNRNTNRQKIEEVISRLRSI- 291 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P++ I + F+VGFPGET+++F V + + + F YS GT M Q+ +NV Sbjct: 292 PNMVIRTTFMVGFPGETEEEFEDLKQFVKEKRFERVGVFTYSREEGTKSYYMKPQIKKNV 351 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL-- 440 K +R L + +E N + +G+ +EVLIE G E G GRS P + VV Sbjct: 352 KIKRQQELMEIQKEISYQHNLSKIGKQLEVLIE--GFEDGIYYGRSYMDAPEIDGVVYVK 409 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466 + K GD + ITD L GE Sbjct: 410 SDKKLKAGDFVVATITDAYEYDLVGE 435 >gi|255525323|ref|ZP_05392263.1| MiaB-like tRNA modifying enzyme [Clostridium carboxidivorans P7] gi|296188191|ref|ZP_06856583.1| MiaB-like tRNA modifying enzyme [Clostridium carboxidivorans P7] gi|255510995|gb|EET87295.1| MiaB-like tRNA modifying enzyme [Clostridium carboxidivorans P7] gi|296047317|gb|EFG86759.1| MiaB-like tRNA modifying enzyme [Clostridium carboxidivorans P7] Length = 436 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 146/445 (32%), Positives = 239/445 (53%), Gaps = 25/445 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M + F GYE V + AD+ V+NTC + +K + R R Sbjct: 7 TLGCRVNKYETEAMVEKFIKDGYEVVPFEEYADVYVINTCTVTNMGDKKSRQMIHRAR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRV 149 +E D ++ V GC +Q EE+ + V+VV+G + + + R R K+V Sbjct: 65 -----RENEDAVISVVGCYSQIASEEVSQIDG-VDVVLGTRNKGEIVYWVNRVREERKQV 118 Query: 150 VDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V+ +++ FE L+I Y K AFL IQ+GC++FC++C++P+ RG S+ Sbjct: 119 VEVKEVMKNNAFEELNI--ESYQDK--TRAFLKIQDGCNRFCSYCLIPFARGAVCSKPPE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRYTT 267 +++ E ++L +G EI L G + ++ G+D E+ C+ +L + +I G+ R+R + Sbjct: 175 KIISEVKELAAHGFKEIILSGIHTASY---GVDLEEDCSLLSVLEQIDKIPGIERVRIGS 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P+ ++ +I+ L L P+ HL +QSG + LK MNRR+TA EY +I++ +RS Sbjct: 232 IDPQFFTEGVIERISVLKKLCPHFHLSLQSGCNETLKRMNRRYTAGEYEKIVEDLRSNID 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D++I++D IVGFP ET+++F T + + +I ++ FKYSPR GT + M VD N+K Sbjct: 292 DVSITTDIIVGFPEETEEEFNTTYEFLKRIKLSKIHVFKYSPRKGTKAAEMKNSVDGNIK 351 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLNSK 443 ER L+ L K + E+ F +G+ +EVL E+ L G +P VV S+ Sbjct: 352 DERSSKLIALDKVMEEE---FMKKFLGRNMEVLYEQKCSNSQDLYEGYTPNYIKVVSKSE 408 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 G I I K L G L+ Sbjct: 409 KDISGSIKNTEIVQTKNGILEGNLL 433 >gi|225573635|ref|ZP_03782390.1| hypothetical protein RUMHYD_01829 [Blautia hydrogenotrophica DSM 10507] gi|225039003|gb|EEG49249.1| hypothetical protein RUMHYD_01829 [Blautia hydrogenotrophica DSM 10507] Length = 445 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 138/448 (30%), Positives = 224/448 (50%), Gaps = 26/448 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N+ DS M + +GYE + +AD+I +NTC I + E + S L Sbjct: 7 SLGCDKNLVDSEEMLGLLRDRGYEITDDETEADVIAINTCCFIHDAKEESIQSILEMAEY 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K R K +++V GC+AQ +EI + P V+VV+G ++ ++ + L+ A G + Sbjct: 67 RKQGRCK-----VLLVTGCMAQRYQKEIRQEIPEVDVVLGTTSFEKIVDALDSAFRG--I 119 Query: 150 VDTDYSVEDKFERLS----IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 D+ D +S + GGY +L I EGCDK CT+C++P RG S Sbjct: 120 PYEDFESIDYLPMVSADRILTTGGYY------GYLKIAEGCDKHCTYCIIPSLRGKFRSY 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +++ +A K+ GV E+ L+ Q + G L G+K + LL L +I G+ +R Sbjct: 174 PMERLLKQAEKMAQQGVRELILVAQETTLY-GTDLYGKK-SLHRLLEELCKITGIYWIRV 231 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P ++ L++ + YL LP+Q SDRILK M RR + + +I+ +R Sbjct: 232 LYCYPEEIYPELVEVIAREPKVCHYLDLPIQHASDRILKRMGRRTSKKQLVEIVRTLREK 291 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDI + + I GFPGET +D M+ VD + + + F YSP TP + M Q+ E Sbjct: 292 IPDIVLRTTLITGFPGETQEDHEELMEFVDTMEFDRLGVFTYSPEENTPAAVMKAQISEE 351 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441 +K +R L + +E + ++ +GQ++ V+IE ++ VGR+ P + + Sbjct: 352 IKEDRKAELMELQQEISLERGNSRIGQVLLVMIEGKVADENAYVGRTYADAPNVDGYIFV 411 Query: 442 SKNHNI--GDIIKVRITDVKISTLYGEL 467 + GD +KVR+T L GE+ Sbjct: 412 QSPEMLMSGDFVKVRVTGALEYDLIGEI 439 >gi|253573595|ref|ZP_04850938.1| MiaB-like tRNA modifying enzyme YliG [Paenibacillus sp. oral taxon 786 str. D14] gi|251847123|gb|EES75128.1| MiaB-like tRNA modifying enzyme YliG [Paenibacillus sp. oral taxon 786 str. D14] Length = 442 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 134/454 (29%), Positives = 241/454 (53%), Gaps = 23/454 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + + GC+ N+ DS M + +GY V++ +DA +I++NTC + A E+ + + Sbjct: 3 EKVKIVTLGCEKNLVDSEIMSGLIEQRGYSLVDNREDATVIIVNTCGFIDAAKEESVNTI 62 Query: 85 GRIRNLKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + +LK S R+K ++V+GC+ Q + ++ P ++ +VG ++++ +++ A Sbjct: 63 LELADLKESGRLK-----ALIVSGCLTQRYKQALMEEMPEIDGIVGTGDFHQINRIVDEA 117 Query: 144 RFGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 GK+ V + ++ E R + Y T ++ I EGCD CTFC +P RG Sbjct: 118 LKGKKPALVGNPVFNYEQALPR-KLSTARY------TTYVKIAEGCDNNCTFCSIPIMRG 170 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SRS+ +++E R + GV EI+L+ Q+ + G L GE ++L+ +++++G+ Sbjct: 171 KFRSRSMESILEEVRSMAAQGVKEISLIAQDSTNY-GTDLYGE-FKLAELMDRVTQVEGV 228 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++P +D LI+ + Y+ +P+Q D ILK M R + R++I Sbjct: 229 EWVRLHYAYPGFFTDELIEMMATNPKICKYVDMPLQHSEDSILKRMRRPGRNRDIRELIA 288 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +IR+ P++++ + IVGFPGET++DF + V +I + + F YS TP S + + Sbjct: 289 KIRARIPNVSLRTSLIVGFPGETEEDFERLCEFVREIKFDRLGVFTYSKEEDTPASRLPD 348 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ---- 436 QVDE VK R L + RE + + +GQ+++VLIE++ VGRS + Sbjct: 349 QVDEEVKEWRANTLMEIQREVANANSSKYIGQVLDVLIERYDGRSDVYVGRSQYDAPEID 408 Query: 437 -SVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 V + + +G++ KVRIT L GE V+ Sbjct: 409 GEVYVTNCPVGLGELTKVRITHAFDYDLSGEAVL 442 >gi|260888225|ref|ZP_05899488.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sputigena ATCC 35185] gi|260862059|gb|EEX76559.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sputigena ATCC 35185] Length = 412 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 143/428 (33%), Positives = 222/428 (51%), Gaps = 20/428 (4%) Query: 44 MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103 ME +F +GY V + AD+ V+NTC + +K + R R L N R ++ Sbjct: 1 MEGLFRQRGYAIVPFDEAADVYVINTCSVTSLGEKKSRQLIRRARRL-NERA------VI 53 Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT--DYSVEDKFE 161 V GC AQ EEI R V VV+G + + + +ERA V D D +FE Sbjct: 54 AVTGCYAQVAPEEI-RSIEGVRVVLGTKERAAIVDHVERAAREAGVFDGTGDIMHASEFE 112 Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221 + + G R R AFL I+EGC+ FC+FC++PY RG SR L V EA KL+ G Sbjct: 113 DIPLF-GAPARTR---AFLKIEEGCENFCSFCIIPYARGPVRSRLLKSVRREAAKLLAMG 168 Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281 EI L G ++ + G D T +D + ++ + GL RLR + ++SD L+ Sbjct: 169 FKEIVLTGIHLGCY---GRDLGDVTLADAVRAVLSLPGLKRLRLGSLESIELSDDLLALL 225 Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341 + +LHLP+Q+GSD +L++MNR + ++ +I+R+ P +AIS+D IVGFPG Sbjct: 226 AQEERFAGHLHLPLQAGSDEVLRAMNRHYDTAKFAALIERVERAVPGVAISTDIIVGFPG 285 Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401 ET + F ++ V+++ +A+ F YSPR GTP + QV E K ER+ +Q ++ Sbjct: 286 ETQELFEESLAFVERMNFARMHVFPYSPRRGTPAAAFAAQVPEAEKKERVHRMQALAAKK 345 Query: 402 QVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIS 461 +F+ A +G + VL E + +G G + V ++ GDI +R+ + Sbjct: 346 SEAFHAAFLGTEMPVLFET--EREGVTDGLTANYIRVYTDAPVRT-GDIHAMRLVHLYRD 402 Query: 462 TLYGELVV 469 ++GEL+ Sbjct: 403 GVWGELLA 410 >gi|113955194|ref|YP_731737.1| tRNA modifying protein [Synechococcus sp. CC9311] gi|123327578|sp|Q0I735|RIMO_SYNS3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|113882545|gb|ABI47503.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Synechococcus sp. CC9311] Length = 470 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/454 (28%), Positives = 234/454 (51%), Gaps = 42/454 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91 GC+ N D+ M + GY + +DA+L+V+NTC I++ E V + +G Sbjct: 28 GCEKNRVDTEHMLGLLAEAGYGVSSDENDANLVVVNTCSFIQDAREESVRTLVG------ 81 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-- 149 + E G L++ AGC+AQ +E+L P +VG Y + E+L++ G+RV Sbjct: 82 ---LAEQGKELII-AGCLAQHFQDELLESIPEAKAIVGTGDYQHIVEVLQQVEAGERVNR 137 Query: 150 --VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + ++ R Y A+L + EGCD C FC++P+ RG + SR++ Sbjct: 138 VSQTPTFVADENLPR-------YRTTGEAVAYLKVAEGCDYRCAFCIIPHLRGNQRSRTI 190 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYT 266 +V EA +L + GV E+ L+ Q + G L G K +DLL +L +++ +R+ Y Sbjct: 191 ESIVAEAHQLAEQGVQELILISQITTNY-GLDLYG-KPRLADLLKALGDVEIPWIRVHY- 247 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P ++ ++ A+ D+ ++PYL LP+Q +L++MNR A +++D+IR Sbjct: 248 -AYPTGLTPAVLAAYRDVPNVLPYLDLPLQHSHPEVLRAMNRPWQADVNERLLDQIREQL 306 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P+ + + IVGFPGET+D F +++ + F +SP GT + + + V + + Sbjct: 307 PNAILRTTLIVGFPGETEDQFEHLAGFLERQRFDHVGIFTFSPEDGTAAATLPDSVPDEI 366 Query: 387 ---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439 + ++L+ LQ+ + + N + +G+ ++VL+E+H G+++GR +P + V Sbjct: 367 AIARKDKLMTLQQPI---SAARNASWIGKTVDVLVEQHNPSTGEMIGRCSRFAPEVDGEV 423 Query: 440 L-----NSKNHNIGDIIKVRITDVKISTLYGELV 468 L N N G ++ V+IT I L G +V Sbjct: 424 LVQPGDNGLQVNPGTMVPVQITGADIYDLSGHVV 457 >gi|121535290|ref|ZP_01667104.1| MiaB-like tRNA modifying enzyme YliG [Thermosinus carboxydivorans Nor1] gi|121306175|gb|EAX47103.1| MiaB-like tRNA modifying enzyme YliG [Thermosinus carboxydivorans Nor1] Length = 441 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/408 (31%), Positives = 216/408 (52%), Gaps = 22/408 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M + + V+ DAD++++NTC + A E+ + + ++ Sbjct: 8 SLGCAKNLVDTEVMLGILTNNNIAIVDDPGDADILIVNTCGFIDSAKEESITTILQMAEY 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K KE ++VAGC+ Q +E+L P V+ +VG ++R+ E ++ A G+RV+ Sbjct: 68 K----KESNCRALIVAGCLGQRYQQELLDELPEVDAIVGTGAWHRIMEAVQAALSGQRVL 123 Query: 151 ---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 T+ ++ R+ Y + +A++ + EGC C++CV+P RG SR Sbjct: 124 VIGPTETIYDETMPRI------YTTPK-YSAYVKVAEGCSNCCSYCVIPLVRGRFRSRPQ 176 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +V E ++L NG+ EI L+ Q+ ++ G+ L G+ LL +L +I+G+ +R Sbjct: 177 ESIVSEVKRLAANGIKEINLIAQDTTSY-GRDLYGQ-LQLPQLLRALVQIEGIEWIRLLY 234 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +PR +D LI+ + Y+ LP+Q D ILK+M+RR + ++ ++ +IR P Sbjct: 235 CYPRYFTDELIEVIAKEPKICKYVDLPLQHIHDDILKAMHRRDSRFDIESLLAKIRKAIP 294 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D+AI + FIVGFPGETDD F+ + + + F YS GT M +QV E VK Sbjct: 295 DVAIRTSFIVGFPGETDDHFQVLQEFMQVQKFDHVGIFTYSQEEGTVAGAMADQVPEEVK 354 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 ER L+ LQ ++ E+ N G++++VL+E + G + GRS Sbjct: 355 QERYHALMALQCQISEE---INRQLEGRVLKVLVEGKSDQPGVVFGRS 399 >gi|18310657|ref|NP_562591.1| hypothetical protein CPE1675 [Clostridium perfringens str. 13] gi|168207519|ref|ZP_02633524.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium perfringens E str. JGS1987] gi|168211437|ref|ZP_02637062.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium perfringens B str. ATCC 3626] gi|168214492|ref|ZP_02640117.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium perfringens CPE str. F4969] gi|168216962|ref|ZP_02642587.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium perfringens NCTC 8239] gi|182626371|ref|ZP_02954125.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium perfringens D str. JGS1721] gi|261876147|ref|YP_696362.2| putative tRNA modifying protein [Clostridium perfringens ATCC 13124] gi|81766992|sp|Q8XJS9|RIMO_CLOPE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065375|sp|Q0TPS8|RIMO_CLOP1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|18145338|dbj|BAB81381.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|170661121|gb|EDT13804.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium perfringens E str. JGS1987] gi|170710553|gb|EDT22735.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium perfringens B str. ATCC 3626] gi|170714028|gb|EDT26210.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium perfringens CPE str. F4969] gi|177908322|gb|EDT70870.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium perfringens D str. JGS1721] gi|182380907|gb|EDT78386.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium perfringens NCTC 8239] gi|255529895|gb|ABG84692.2| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium perfringens ATCC 13124] Length = 445 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 140/407 (34%), Positives = 217/407 (53%), Gaps = 22/407 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS M M ++ YE N+ +AD+I++NTC EKA ++ + + + Sbjct: 10 SLGCDKNRVDSEIMLGMVQNE-YELTNNPKEADIIIVNTCGFIEKAKQESINTILDMAKY 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--KR 148 K S L++ GC+ Q G+E+L P +++++G Y ++ E + G ++ Sbjct: 69 KTSH----NCKLLIATGCLTQRYGDELLELMPEIDIMLGVNDYAKINEAIMNFINGNNEK 124 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V T+YS E L ++ TA+L I EGCD FCT+C++P RG SR+L Sbjct: 125 VKATNYSDVSINEGLRLI-----TTDKATAYLRIAEGCDNFCTYCIIPKIRGKFRSRALE 179 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V+EA+KL +NGV E+ L+ Q+ + G + GEK +L L++I+G+ +R Sbjct: 180 SIVEEAKKLAENGVKELILIAQDTTNY-GIDIYGEK-KLHLVLRELAKIEGIEWIRVLYC 237 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P + D LIK D + YL LP+Q S+ +LK M R+ T E I+ +R P+ Sbjct: 238 YPEAIYDELIKEISVNDKVCNYLDLPIQHISNNVLKRMGRKTTKEEIIGKINDLRKNVPN 297 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I + + IVGFPGE+ +DF D + I + F YS GTP + M +Q+DE VK Sbjct: 298 IVLRTSLIVGFPGESCEDFNELKDFIKTIKLDKVGVFTYSREEGTPAAIMEDQIDEEVKK 357 Query: 389 ---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 E ++ LQK++ E+ N VG+ +VLIEK E +GRS Sbjct: 358 AREEEIMLLQKEVSEE---INKNKVGREYDVLIEKFNGE--YYIGRS 399 >gi|83944908|ref|ZP_00957274.1| hypothetical protein OA2633_09774 [Oceanicaulis alexandrii HTCC2633] gi|83851690|gb|EAP89545.1| hypothetical protein OA2633_09774 [Oceanicaulis alexandrii HTCC2633] Length = 418 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 132/395 (33%), Positives = 209/395 (52%), Gaps = 27/395 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N ++S M D + R + DA +++NTC + +A + + R++ Sbjct: 5 TFGCRLNAWESEVMRD------HARAGGLSDA--VIINTCAVTNEAVRQARQTIRRMK-- 54 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---K 147 +E D ++V GC AQ + E+ + + V+ V+G R PE + G K Sbjct: 55 -----RERPDARMIVTGCAAQIDPEQFAKMAE-VDQVLGNAEKLR-PETFKSTVIGGGDK 107 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 VD +V + L VDG R R A++ +Q GCD CTFC++PY RG S Sbjct: 108 VKVDDIMAVSEIASHL--VDGLDGRAR---AYVQVQTGCDHRCTFCIIPYGRGNARSAPA 162 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +VVD+ ++L++ G E+ L G ++ +W G+ L G + L ++ L RLR ++ Sbjct: 163 GEVVDQVKRLVETGHSEVVLTGVDMTSW-GQDLPGTPKLGRLVRAILKQVPDLQRLRLSS 221 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++ + L +A + + L PY+HL +Q+G D ILK M RRH+ + + R+R+VRP Sbjct: 222 IDAIEIDEDLFRAIAEEERLCPYMHLSLQAGDDMILKRMKRRHSRDDAIALAKRLRAVRP 281 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 DIA +D I GFP ET++ F+ ++ LVD+ A F YSPR GTP + M QVD V Sbjct: 282 DIAFGADLIAGFPTETEEMFQNSLRLVDECDLAFVHVFPYSPRPGTPAARM-PQVDREVV 340 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 ER L+ K E + VG+ + VL+EK G Sbjct: 341 KERAARLRAKSHEALQRHLASRVGKQMTVLVEKPG 375 >gi|110803355|ref|YP_698962.1| MiaB-like tRNA modifying enzyme YliG [Clostridium perfringens SM101] gi|123341726|sp|Q0SSE5|RIMO_CLOPS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|110683856|gb|ABG87226.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium perfringens SM101] Length = 445 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 140/407 (34%), Positives = 217/407 (53%), Gaps = 22/407 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS M M ++ YE N+ +AD+I++NTC EKA ++ + + + Sbjct: 10 SLGCDKNRVDSEIMLGMVQNE-YELTNNPKEADIIIVNTCGFIEKAKQESINTILDMAKY 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--KR 148 K S L++ GC+ Q G+E+L P +++++G Y ++ E + G ++ Sbjct: 69 KTSH----NCKLLIATGCLTQRYGDELLELMPEIDIMLGVNDYAKINEAIMNFINGNNEK 124 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V T+YS E L ++ TA+L I EGCD FCT+C++P RG SR+L Sbjct: 125 VKATNYSDVSINEGLRLI-----TTDKATAYLRIAEGCDNFCTYCIIPKIRGKFRSRALE 179 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V+EA+KL +NGV E+ L+ Q+ + G + GEK +L L++I+G+ +R Sbjct: 180 SIVEEAKKLAENGVKELILIAQDTTNY-GIDIYGEK-KLHLVLRELAKIEGIEWIRVLYC 237 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P + D LIK D + YL LP+Q S+ +LK M R+ T E I+ +R P+ Sbjct: 238 YPEAIYDELIKEISVNDKVCNYLDLPIQHISNNVLKRMGRKTTKEEIIGKINDLRKNVPN 297 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I + + IVGFPGE+ +DF D + I + F YS GTP + M +Q+DE VK Sbjct: 298 IVLRTSLIVGFPGESCEDFNELKDFIKTIKLDKVGVFTYSREEGTPAAIMEDQIDEEVKK 357 Query: 389 ---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 E ++ LQK+L E+ N +G+ +VLIEK E +GRS Sbjct: 358 AREEEIMLLQKELSEE---INKNKLGREYDVLIEKFNGE--YYIGRS 399 >gi|302389780|ref|YP_003825601.1| SSU ribosomal protein S12P methylthiotransferase [Thermosediminibacter oceani DSM 16646] gi|302200408|gb|ADL07978.1| SSU ribosomal protein S12P methylthiotransferase [Thermosediminibacter oceani DSM 16646] Length = 441 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 135/451 (29%), Positives = 231/451 (51%), Gaps = 32/451 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS + GY + +AD+I++NTC A ++ + + Sbjct: 9 SLGCDKNLVDSEYLLGALLENGYVITSDASEADIIIINTCCFINSAKQESIDTILEMAQY 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K S G +++ GC+AQ G+ IL+ P ++ V+G +++LP L+E+ + + Sbjct: 69 KTS----GNCKMLIATGCLAQRYGDAILKEIPELDAVIGTGDFHKLPGLIEKLNNSRLKI 124 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 T E S ++ Y+ K+ V +++ I EGC C++C +P RG SR Sbjct: 125 IT--------ENRSFIN--YDIKKRVRTSNYFSYVKIAEGCSNCCSYCAIPQIRGPYKSR 174 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + + +E L+ GV EI L+ Q+ ++ G + G K + DLL +L +IKG +R Sbjct: 175 PIESIKEEVELLVSQGVKEINLVAQDTTSY-GMDISG-KPSLPDLLRALVDIKGEFWIRI 232 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P + D L++ + YL +P+Q +DRIL+ MNR + + +++I++IR + Sbjct: 233 LYAYPTHIDDELLELISSSTKIAKYLDIPLQHINDRILRLMNRPINSEQIKKLIEKIRII 292 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDI I + FIVGFP E+D DF+ +D V + + +FKYS GT + + QV E Sbjct: 293 VPDITIRTTFIVGFPTESDSDFQELIDFVKIYRFDRVGAFKYSREEGTYAATLKPQVPER 352 Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ-S 437 VK ER L+ +Q+ + + N+ +G I VL E + + +GRS P + + Sbjct: 353 VKQERYDQLMTVQQVISKMN---NEKMLGSTITVLAESYDPARKMFIGRSQKDAPGVDGT 409 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V+ + +G +V+IT+ L GE+V Sbjct: 410 VMFQGEVRQLGRFYRVKITEAFEYDLMGEVV 440 >gi|289423873|ref|ZP_06425666.1| conserved hypothetical protein [Peptostreptococcus anaerobius 653-L] gi|289155650|gb|EFD04322.1| conserved hypothetical protein [Peptostreptococcus anaerobius 653-L] Length = 449 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 138/454 (30%), Positives = 234/454 (51%), Gaps = 28/454 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++S GC N+ D+ M + +G++ V+S + AD++++NTC E A ++ + Sbjct: 2 KIALESLGCSKNLVDAEIMLGLLNKKGHQLVSSPEGADVVIVNTCGFIESAKQESIDSIV 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +LKN EG ++V+GC+AQ +E+ P ++ +VG +Y + ++++ Sbjct: 62 EYADLKN----EGSLKYLLVSGCLAQRYPDELKEEIPEIDAIVGTGSYQNITTVVDKLMT 117 Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +V D ++S + R Y A+L I EGCD CT+C++P RG Sbjct: 118 RDGIVEIGDINFSFNEDLPR-------YISTPDHLAYLKIGEGCDNNCTYCIIPKLRGKY 170 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR L ++ EA L++ GV E+ ++ Q+ + + G+ G + ++LL L+++ G Sbjct: 171 RSRKLEDLLAEAEGLLERGVKELVVIAQDTSVY-GRDRYG-RVMLAELLERLAKM-GFKW 227 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R S+P +++ ++ D L Y +P+Q SDRILK MNR + E R ++ I Sbjct: 228 IRVMYSYPEGITEEIVDVIAKYDNLCSYFDIPMQHASDRILKLMNRHTSNQELRSKVEMI 287 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RS PD I + FIVGFPGETD+DF +D V+ +G + +F YS TP + + + Sbjct: 288 RSKIPDATIRTTFIVGFPGETDEDFDTLIDFVENMGLDRMGAFTYSREEDTPADRLPDHI 347 Query: 383 DENVKAERLLCLQKKLREQQVS--FNDACVGQIIEVLIEKHGKEKGKLVGRSPW----LQ 436 DE+ K ERL L + +Q VS N +G EVLIE + +GR+ + + Sbjct: 348 DEDTKKERLERLM--MVQQSVSEIINQKKIGNTYEVLIEDQ-IDDTLYIGRTKYDAEEID 404 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 SV+ ++ GD++ V + L G LV Sbjct: 405 SVIYVETKRDLSRGDMVDVLVESAYEYDLKGHLV 438 >gi|160933769|ref|ZP_02081157.1| hypothetical protein CLOLEP_02630 [Clostridium leptum DSM 753] gi|156867646|gb|EDO61018.1| hypothetical protein CLOLEP_02630 [Clostridium leptum DSM 753] Length = 429 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 137/447 (30%), Positives = 227/447 (50%), Gaps = 27/447 (6%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 ++ + GC++N Y+S M + G+ + ++AD+++LN+C + + +K+ L R Sbjct: 4 YILTLGCKVNQYESQAMLEELCRSGFAPAETEEEADVVILNSCTVTAASDQKMRKLLHRA 63 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL-PELLERARFG 146 R ++ L+V+ GC+ QA EE + P ++V+G L P +L+ Sbjct: 64 R-------RKNPQALLVLTGCMPQAFPEEAAK-LPEPDLVLGTSNRKELVPSVLKALENR 115 Query: 147 KRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +R V Y+ +D FE L I ++ + AFL IQ+GC++FC++C++PY+RG S+ Sbjct: 116 RREVKIRPYTGKDSFESLQI----HSFQERTRAFLKIQDGCNRFCSYCIIPYSRGRVRSK 171 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 L ++ EAR L +G EI L G N++ + + GL D + ++ + + R+R Sbjct: 172 PLEELTREARTLAASGYREIVLTGINLSCYGQDSGLG-----LWDAVEAVCGLPEVERVR 226 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + P M +++ + L P HL +QSG D LK MNR +TA EY I++ IR Sbjct: 227 LGSLEPEQMELPVLERLARQEKLCPQFHLSLQSGCDATLKRMNRHYTAAEYESIVNNIRG 286 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 V + ++++D +VGF GET +DF +++ KIG+A+ F YS R GT M QV Sbjct: 287 VFDNPSVTTDMMVGFAGETPEDFEESLNFARKIGFAKVHVFAYSRRPGTAADRMPGQVPN 346 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE---KGKLVGRSPWLQSVVLN 441 VK ER L + E + F VG+ VL E E +G +P V + Sbjct: 347 KVKEERSRRLIEATNEARRRFLLTQVGRTEPVLFESKRLEDYYEGYTANYTP----VHVQ 402 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 S G I+ V+I + +G L+ Sbjct: 403 SPIPLFGKILSVKILEAGEDFCFGSLI 429 >gi|238917054|ref|YP_002930571.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750] gi|238872414|gb|ACR72124.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750] Length = 450 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 135/448 (30%), Positives = 233/448 (52%), Gaps = 38/448 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84 + S GC N+ D+ M + +G+E + AD+IV+NTC I + E + + L Sbjct: 9 KIMFASLGCDKNLVDTENMLGILNDKGFEFTDDETQADVIVVNTCCFIGDAKQESINTIL 68 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ +++ K ++V GC+A +EI++ P V+ +G +Y ++ E++ Sbjct: 69 EMAQHKEDAVCK-----ALIVTGCLAHRYKDEIIKEIPEVDAFLGTTSYDKIAEVVTSVL 123 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA-----FLTIQEGCDKFCTFCVVPYTR 199 GK ++V D RL IV KR +T +L I EGCDK CT+C++P R Sbjct: 124 EGK-----GFNVVDDANRLPIV----KEKRIITTPGYFEYLKIAEGCDKHCTYCIIPKVR 174 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G S + +V++A+ L+ NG E+ L+ Q + G L G+K + L++ L++I+ Sbjct: 175 GNFRSYPVEYLVEQAKHLVHNGAKELILVAQETTLY-GTDLYGKK-SLPMLIHELAKIED 232 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L +R +P +++D LI+A + + YL +P+Q SD +LK M R+ E I+ Sbjct: 233 LKWIRIQYCYPEEINDELIEAIKNEPKVCHYLDMPIQHASDNVLKRMGRKTDKQELLDIV 292 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R PDIA+ + I GFPGET D M+ +D+I + + F YS TP + M Sbjct: 293 AKLRKEIPDIALRTTLIAGFPGETQADHEEVMEFIDEIEFDRLGVFTYSREEDTPAATMP 352 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRS-- 432 +Q+D+++ + L+ LQ Q++S + + VG+ I+V++E + E VGRS Sbjct: 353 DQIDQDIMDTWRDELMALQ-----QEISIDKSAQMVGKTIDVMVEGYIAEDNTYVGRSYK 407 Query: 433 --PWLQSVVLNSKNHNI--GDIIKVRIT 456 P + +V + + GD + V+IT Sbjct: 408 DAPNVDGMVFFECDRELMSGDFVSVKIT 435 >gi|218288632|ref|ZP_03492909.1| MiaB-like tRNA modifying enzyme [Alicyclobacillus acidocaldarius LAA1] gi|218241289|gb|EED08464.1| MiaB-like tRNA modifying enzyme [Alicyclobacillus acidocaldarius LAA1] Length = 475 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 135/392 (34%), Positives = 203/392 (51%), Gaps = 19/392 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N YD+ + F +GY +V AD+ V+NTC + K R + Sbjct: 8 TLGCKVNFYDTEGIWQTFKRRGYTQVPFDSKADVYVVNTCTVTHTGDRKS-------RQM 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ D +VVV GC AQ +EI R V++VVG ++ + +E A +R Sbjct: 61 IRRAVRTNPDAVVVVTGCYAQIAPDEIARIQG-VDLVVGNDQKSKIVDHVE-AVLAERKP 118 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 K +D Y +R A L IQ+GC+ FCTFC++P RG+ SR V Sbjct: 119 YLAVGNIMKATEFDELDVPYFEERS-RANLKIQDGCNNFCTFCIIPRARGLIRSRKPENV 177 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V +A KL G EI L G + G G D E +DLL L I R+R ++ Sbjct: 178 VLQATKLARAGYREIVLTGIHTG---GYGEDFENYRLADLLLDLERIDLPFRIRISSIEA 234 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++ D L+ ++P+LH+P+Q+GSD +L+ M+R +T EY + + +R PD+A Sbjct: 235 SEIDDRLMDVLAASKKVVPHLHIPLQAGSDPVLRRMHRHYTTAEYAEKLQELRRRLPDLA 294 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE- 389 +++D IVGFPGETD+ F T V GYAQ F YSPR GT +QV E+VK E Sbjct: 295 VTTDVIVGFPGETDEQFEETYAFVRAQGYAQLHVFPYSPRRGTAAYKFKDQVPEDVKRER 354 Query: 390 --RLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 R++ L +LR+ ++ + VG+ +EV+ E Sbjct: 355 VARMIALGDELRQ---AYAASFVGRELEVIAE 383 >gi|255505363|ref|ZP_05345671.3| RNA modification enzyme, MiaB family [Bryantella formatexigens DSM 14469] gi|255268564|gb|EET61769.1| RNA modification enzyme, MiaB family [Bryantella formatexigens DSM 14469] Length = 446 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 140/445 (31%), Positives = 222/445 (49%), Gaps = 20/445 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N+ DS M + +GY + + AD+I++NTC I + E V + L + Sbjct: 8 SLGCDKNLVDSEEMLGLLARRGYTMTDDEEQADIIIINTCCFINDAKEESVQTILEMAEH 67 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 KN + ++V GC+AQ EEI V+ V+G +Y + E +ER G++ Sbjct: 68 RKNGTCR-----ALIVTGCLAQRYREEITTEISEVDAVLGTSSYDEIVETVERVLAGQK- 121 Query: 150 VDTDYSVEDKFERLSIVDGG-YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 Y + +RL DGG G A L I EGCDK CT+C++P RG S + Sbjct: 122 ----YLHFQELDRLPAPDGGRVVTTGGHYAHLKIAEGCDKHCTYCIIPQIRGNFRSVPME 177 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +++ +A +L GV E+ L+ Q + G L G+K + LL L +IKG+ +R Sbjct: 178 RLLAQAEELAGGGVRELILVAQETTLY-GVDLYGKK-SLHLLLQELCKIKGIRWIRILYC 235 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ + LI+ + YL LP+Q S+RILK M RR + + +II ++R PD Sbjct: 236 YPEEIYEELIETIRTEKKICHYLDLPIQHASNRILKRMGRRTSREQLAEIIHKLRREIPD 295 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 IA+ + I GFPGET +D M VD++ + + F YS GTP + M +Q+ + +K Sbjct: 296 IALRTTLISGFPGETQEDHEELMAFVDEMEFDRLGVFPYSQEEGTPAAAMPDQIPQEIKE 355 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKN 444 R L + +E NDA G+ + ++E + ++ V R+ P + + Sbjct: 356 ARRDELMELQQEIVFEKNDAMCGRTVTAMVEGYLTDENVYVARTYADAPGVDGYLFIETQ 415 Query: 445 HNI--GDIIKVRITDVKISTLYGEL 467 + GD ++VRIT L GE+ Sbjct: 416 ETLMSGDFVRVRITGALEYDLIGEI 440 >gi|320102495|ref|YP_004178086.1| 30S ribosomal protein S12P methylthiotransferase [Isosphaera pallida ATCC 43644] gi|319749777|gb|ADV61537.1| SSU ribosomal protein S12P methylthiotransferase [Isosphaera pallida ATCC 43644] Length = 489 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 124/410 (30%), Positives = 215/410 (52%), Gaps = 17/410 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + GC N+ DS RM + GY V + DL+++NTC E A ++ + + Sbjct: 13 FSFVTLGCAKNLVDSERMLGLLSQDGYALVPEGEPCDLVIVNTCGFIEPARKESMAVIHE 72 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + + K + +G V+VAGC+A+ EE+L + P ++ V+G ++ + +R G Sbjct: 73 LLDRKRAGTVKG----VIVAGCLAERNREELLDQVPEIDQVIGVFGREQIVQAADRVLGG 128 Query: 147 ---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +R + ++ + +R + + A+L + EGCD+ CTFC +P RG + Sbjct: 129 LVEQRTIFNPAPIQAQIDRARLRVTPRH-----LAYLKVSEGCDRLCTFCAIPMMRGKHV 183 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 ++ + +V+ EA +L+ +GV E+ L+ Q++ + G L GE ++LL L ++ GL + Sbjct: 184 TKPIEEVLREAEELVRDGVRELVLVAQDMTYY-GMDLYGEP-RLAELLQRLDQLDGLDWI 241 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R +PR +D L ++PYL +P+Q +DR+L++MNRRHT E II R+R Sbjct: 242 RILYCYPRHFTDELYATLAGATRIVPYLDMPLQHINDRMLRAMNRRHTKQETIGIIQRLR 301 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P + + + FIVGFPGET++ F + V + + + F YS TP + + +D Sbjct: 302 AEIPRLVLRTTFIVGFPGETEEQFAELEEFVVQTRFERLGVFPYSYEPDTPAARLKGHLD 361 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVG 430 E K +R + + FN++ VGQ +EVLI+ H + +G G Sbjct: 362 EETKLQRRDRIMAAQQPIAFEFNESLVGQTLEVLIDAADLHPRHEGDPFG 411 >gi|222100720|ref|YP_002535288.1| MiaB-like tRNA modifying enzyme [Thermotoga neapolitana DSM 4359] gi|221573110|gb|ACM23922.1| MiaB-like tRNA modifying enzyme [Thermotoga neapolitana DSM 4359] Length = 434 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 136/444 (30%), Positives = 243/444 (54%), Gaps = 33/444 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 ++++GC++N Y+S M + GY V +A ++N+C + ++ +KV + IR Sbjct: 6 IETFGCKVNQYESEYMAEQLEKAGYT-VLPAGEASYYIINSCVVTQEVEKKVKRLVKSIR 64 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 ++ D +++ GC AQ EE ++ P VN+V+G + + L ++ Sbjct: 65 -------RKNRDAKIILTGCFAQLFPEE-AKKLP-VNMVLGISEKKNIVDHLLSLNGEQK 115 Query: 149 VVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SR 205 +V + D V +K V G + + A++ +++GCD CT+C + + RG ++ S+ Sbjct: 116 LVVSAPDSPVYEK------VKGSFEDR--TRAYIKVEDGCDNGCTYCAIRFARGTKVRSK 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L +E K++ G EI + G N+ + GK + T DLL + + G R+R Sbjct: 168 PLELFKEEFEKMVIKGYKEIVITGVNLGKY-GKDIG---TTLVDLLKIVEHVPGDYRVRL 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ + D++D L++ D L P+LH+ VQSGSDR+LK M RR+++ ++ ++++++RS+ Sbjct: 224 SSLNVEDITDELVEVFRDNPRLCPHLHISVQSGSDRVLKRMGRRYSSSDFLKVVEKLRSI 283 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD +I++D IVGFPGETD+DF T+ L++++ +++ F+YSPR GTP S + V E+ Sbjct: 284 NPDFSITTDIIVGFPGETDEDFLKTVKLLEEVEFSRVHIFRYSPRPGTPASTFSDAVPEH 343 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 K ERL L++K +E + V + VL E + KG L G + K+ Sbjct: 344 KKKERLNILKEKAKEVSHRYKRRMVNKKRRVLAEWY-IAKGVLSGYDEYY------VKHE 396 Query: 446 NIGDIIKVRITDVKISTLYGELVV 469 +GD I V +V++ +L E V+ Sbjct: 397 FVGDGIGV-FHNVRVKSLSEEGVI 419 >gi|240144123|ref|ZP_04742724.1| RNA modification enzyme, MiaB family [Roseburia intestinalis L1-82] gi|257203915|gb|EEV02200.1| RNA modification enzyme, MiaB family [Roseburia intestinalis L1-82] gi|291536225|emb|CBL09337.1| SSU ribosomal protein S12P methylthiotransferase [Roseburia intestinalis M50/1] Length = 444 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 137/457 (29%), Positives = 227/457 (49%), Gaps = 32/457 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84 + S GC N+ D+ M M G E + +AD+I++NTC I + E + + L Sbjct: 6 KLLFVSLGCDKNLVDTEFMLGMLRDDGIEMTDDEQEADIIIVNTCCFINDAKEESINTIL 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 K +R+K ++V GC+AQ EEI++ P V+ ++G +Y + + ++ Sbjct: 66 EMAELKKEARLKS-----LIVTGCLAQRYKEEIVKEIPEVDAILGTNSYEDIVNAVHQSL 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDG--GYNRKRGVT-----AFLTIQEGCDKFCTFCVVPY 197 GK +E ++G + KR VT A+L I EGC+K CT+C++PY Sbjct: 121 EGKH-----------YENFKTLEGLPTLHTKRSVTTGGHFAYLKIAEGCNKRCTYCIIPY 169 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG S + ++++A++L+ G E+ L+ Q + G L GEK + LL L++I Sbjct: 170 IRGNYRSVPMEDLIEQAKELVAAGAKELILVAQETTLY-GVDLYGEK-SLHRLLDELNKI 227 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 K L +R +P ++ + LI A + YL +P+Q +D ILK M RR + + + Sbjct: 228 KDLFWIRIMYCYPEEIYEGLIDAMIRNQKVCHYLDIPIQHANDTILKRMGRRTSNADLVK 287 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 II +R PDI + + I GFPGET + M ++ + + + +F YSP GTP + Sbjct: 288 IITHLRERIPDITLRTTLICGFPGETQEMHEELMQFINDMEFDRLGAFTYSPEEGTPAAE 347 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433 +QVDEN+K + + + E N+ G+ + V IE ++ VGR+ P Sbjct: 348 FTDQVDENLKKDWQADVMELQEEIIFDKNETMKGRELYVFIEGKVSDENAYVGRTYRDAP 407 Query: 434 WLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + + + + + GDI KVR+T L GEL+ Sbjct: 408 DVDGYIFINTDEELMTGDIAKVRVTGAYEYDLIGELI 444 >gi|169342699|ref|ZP_02863740.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium perfringens C str. JGS1495] gi|169299205|gb|EDS81275.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium perfringens C str. JGS1495] Length = 445 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 141/407 (34%), Positives = 217/407 (53%), Gaps = 22/407 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS M M ++ YE N+ +AD+I++NTC EKA ++ + + + Sbjct: 10 SLGCDKNRVDSEIMLGMVQNE-YELTNNPKEADIIIVNTCGFIEKAKQESINTILDMAKY 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--KR 148 K S L++ GC+ Q G+E+L P +++++G Y ++ E + G ++ Sbjct: 69 KTSH----NCKLLIATGCLTQRYGDELLELMPEIDIMLGVNDYAKINEGIMNFINGNNEK 124 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V T+YS E L ++ TA+L I EGCD FCT+C++P RG SR+L Sbjct: 125 VKATNYSDVSINEGLRLI-----TTDKATAYLRIAEGCDNFCTYCIIPKIRGKFRSRALE 179 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V+EA+KL +NGV E+ L+ Q+ + G + GEK +L L++I+G+ +R Sbjct: 180 SIVEEAKKLAENGVKELILIAQDTTNY-GIDIYGEK-KLHLVLRELAKIEGIEWIRVLYC 237 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P + D LIK D + YL LP+Q S+ +LK M R+ T E I+ +R P+ Sbjct: 238 YPEAIYDELIKEISVNDKVCNYLDLPIQHISNNVLKRMGRKTTKEEIIGKINDLRKNVPN 297 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I + + IVGFPGE+ +DF D + I + F YS GTP + M +Q+DE VK Sbjct: 298 IVLRTSLIVGFPGESCEDFNELKDFIKTIKLDKVGVFTYSREEGTPAAIMEDQIDEEVKK 357 Query: 389 ---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 E ++ LQK++ E+ N VG+ +VLIEK E VGRS Sbjct: 358 AREEEIMLLQKEVSEE---INKNKVGREYDVLIEKFNGE--YYVGRS 399 >gi|291458549|ref|ZP_06597939.1| tRNA modification enzyme, MiaB family [Oribacterium sp. oral taxon 078 str. F0262] gi|291419082|gb|EFE92801.1| tRNA modification enzyme, MiaB family [Oribacterium sp. oral taxon 078 str. F0262] Length = 460 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 136/412 (33%), Positives = 213/412 (51%), Gaps = 25/412 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V + GC++N Y++ M + G V + AD+ ++NTC + A +K L R R Sbjct: 10 VHNLGCKVNAYEAEAMLRELENAGARIVPWEERADIYLINTCSVTNIADKKSRQMLHRAR 69 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 KN D +VV GC QA EE+L V++++G R+ ELL G R Sbjct: 70 A-KNP------DAIVVGTGCYVQARKEELLSDGS-VDLLIGNAGKGRIAELLSDYLRGDR 121 Query: 149 V-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 V D +E S GG R AFL +Q+GC +FC++C++PY RG SR+L Sbjct: 122 TPVCFDLRSVHGYEEFSA--GG--RTERARAFLKVQDGCGQFCSYCIIPYLRGEIRSRAL 177 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAW----------RGKGLDGEKCTFS--DLLYSLS 255 ++ E R L + G EI L G +++++ R + + + S L+ ++ Sbjct: 178 PDILREVRALSEGGYREIVLTGIHLSSYGMESCGDRERRERAFNAALPSESLLSLIREVA 237 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + G+ R+R + PR +S ++A + P+ HL +QSGSDR L++MNR + + + Sbjct: 238 SVSGIERVRLGSLEPRIISRDFVRALSGIPEFCPHFHLSLQSGSDRTLRAMNRHYDSAAF 297 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 R+ IR PD A+++D IVGFPGET++DF ++ + +IG+ + FKYS R GT Sbjct: 298 RESAKIIRESFPDAALTTDVIVGFPGETEEDFSESLRFISEIGFYELHVFKYSRRRGTAA 357 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 M QV E VKAER L RE+ F +G+ VL+E+ + +G+ Sbjct: 358 ERMKGQVPEKVKAERSARLIALDRERSAEFRRRFLGRRESVLLEERIEWEGR 409 >gi|313888304|ref|ZP_07821975.1| ribosomal protein S12 methylthiotransferase RimO [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845707|gb|EFR33097.1| ribosomal protein S12 methylthiotransferase RimO [Peptoniphilus harei ACS-146-V-Sch2b] Length = 438 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 133/448 (29%), Positives = 233/448 (52%), Gaps = 27/448 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N DS M + Y+ VN AD++++NTC + A E+ + Sbjct: 8 TLGCSKNDVDSSMMYSLLDKNKYQMVNEPSQADILIVNTCGFIDAAKEESIDTILESVEY 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 KN EG V+++GC+AQ EE+++ P ++ ++G + ELL+R+ G + Sbjct: 68 KN----EGRCKKVLLSGCLAQRYPEELIKEIPEIDGIIGTGNIDYINELLDRSLAGDLFI 123 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 TD + ++G T ++ I EGC+ C++C++P RG SR + + Sbjct: 124 KTDNL------NSAYIEGIRKEVVNTTEYVKISEGCNNNCSYCIIPSLRGKNRSRKIEDI 177 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 E L+ G EI L+ QN + G+D K + ++L+ +S+I+ L +R + Sbjct: 178 YSEVEYLVSKGAREIILIAQNTTDY---GIDLYSKYSLANLINKISKIEDLKWIRVLYLY 234 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P +D LI+ + D L+ Y+ +P+Q SD +LK MNR+ + + + +R PDI Sbjct: 235 PDHFTDELIEEFKNNDKLVNYVDMPLQHISDDVLKRMNRKTSKEHIIKTLKNLRKSVPDI 294 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 I + FIVGFPGE+DDDF +D ++ I + + F+YS GT +++ EQ+ +++K E Sbjct: 295 VIRTTFIVGFPGESDDDFNQLVDFIEDIKFDKLGVFEYSKEEGTRAASLDEQIPDSIKEE 354 Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV--VL 440 R ++ +Q ++ + +S +G+ +EVLIE+ E+ VGR SP + V V Sbjct: 355 RKNEIMAIQSEISAEILS---KKIGKKLEVLIEEEVDEEN-YVGRTYMDSPEIDGVTYVH 410 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++KN +G +++ + D L GE++ Sbjct: 411 SAKNLEMGSFVQIDVVDSLDYDLVGEII 438 >gi|120435421|ref|YP_861107.1| hypothetical protein GFO_1066 [Gramella forsetii KT0803] gi|117577571|emb|CAL66040.1| conserved hypothetical protein [Gramella forsetii KT0803] Length = 448 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 132/438 (30%), Positives = 227/438 (51%), Gaps = 26/438 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F ++G++RV+ + AD+ V+NTC + E A + R + + Sbjct: 10 TLGCKLNFSETSTIARSFENEGFDRVDFSEKADIYVINTCSVTENADK-------RFKTI 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-------ERA 143 K + ++ GC AQ + EE+ + V++V+G +++ + L ER+ Sbjct: 63 VKQAQKSNENAFMIAVGCYAQLKPEELAEVNG-VDLVLGATEKFKITDYLNDLLSHPERS 121 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R V + + D + G Y+ AFL +Q+GCD CT+C +P RGI Sbjct: 122 RGIGEVHSCEINEADFYV------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 175 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260 S L V++ A ++ + G+ EI L G N+ + GKG G K TF DL+ +L +++G+ Sbjct: 176 SDELQNVLNNAAEISEQGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLDLVKALDKVEGI 234 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ P + + I D +P+ H+P+QSGSD ILK M RR+ + Y + Sbjct: 235 ERLRISSIEPNLLKNETIDFVADSRTFVPHFHIPLQSGSDEILKLMRRRYLSDLYVNRVG 294 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR+V PD I D IVGFPGET++ F T + ++++ + F YS R TP + M E Sbjct: 295 RIRAVMPDACIGVDVIVGFPGETEEHFLETYNFLNELDISYLHVFTYSERDNTPAATMEE 354 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 V V+ +R L+ +++ +F ++ +G VL E KE G + G + V Sbjct: 355 VVPVKVRKKRSKMLRGLSAKKRRAFYESQLGNTGTVLFEGENKE-GYIHGFTENYVKVKA 413 Query: 441 NSKNHNIGDIIKVRITDV 458 + + + K+++T++ Sbjct: 414 PWNPNKVNTLQKIKLTEI 431 >gi|88807145|ref|ZP_01122657.1| possible Fe-S oxidoreductase [Synechococcus sp. WH 7805] gi|88788359|gb|EAR19514.1| possible Fe-S oxidoreductase [Synechococcus sp. WH 7805] Length = 468 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 142/454 (31%), Positives = 230/454 (50%), Gaps = 42/454 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91 GC+ N D+ M + GY + DA ++V+NTC I++ E V + +G Sbjct: 26 GCEKNRVDTEHMLGLLSEAGYGVSSDESDASVVVVNTCSFIQDAREESVRTLVG------ 79 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-- 149 + E G L++ AGC+AQ EE+L P +VG Y + E+LER G+RV Sbjct: 80 ---LAEQGKELII-AGCLAQHFQEELLESLPEAKAIVGTGDYQHIVEVLERVEAGERVNR 135 Query: 150 -VDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 T V D ERL +R G A+L + EGCD C FC++P+ RG + SR + Sbjct: 136 VSKTPTFVAD--ERLP-----RHRTTGEAVAYLKVAEGCDYRCAFCIIPHLRGNQRSRPI 188 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYT 266 +V EA +L GV E+ L+ Q + G L G + +DLL +L E++ +R+ Y Sbjct: 189 ESIVAEAHQLAAEGVKELILISQITTNY-GLDLYG-RPRLADLLQALGEVEIPWIRVHY- 245 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P +++ +I A+ D+ ++PYL LP+Q +L++MNR A +++D+IRS Sbjct: 246 -AYPTGLTNEVISAYRDVPNVLPYLDLPLQHSHPEVLRAMNRPWQADVNERLLDQIRSQL 304 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD + + IVGFPGET F +++ + F +SP GT + + + VD ++ Sbjct: 305 PDAVLRTTLIVGFPGETQQQFEHLASFLERQRFDHVGVFTFSPEQGTAAAELPDPVDADI 364 Query: 387 ---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439 + +RL+ LQ+ + + N VG+ ++ LIE+H G ++GR +P + V Sbjct: 365 AMARKDRLMTLQQPI---SAAANARWVGRTVDALIEQHNPANGAMIGRCGRFAPEVDGEV 421 Query: 440 -----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + G +I V+IT I L E+V Sbjct: 422 HIEPRADGLQAAPGTMIPVQITGSDIYDLRAEIV 455 >gi|301165856|emb|CBW25429.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 433 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 133/444 (29%), Positives = 221/444 (49%), Gaps = 21/444 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + + GC++N ++ + F +GYE V + AD+I +NTC + + A Sbjct: 10 KKVALHTLGCRLNFSETGSVAKGFTDRGYEIVEFGEKADVIFVNTCTVTDAAD------- 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 RNL K + +VVAGC AQ E E I V++V+G Y++ E L Sbjct: 63 STCRNLIRKAHKSSPEGKIVVAGCYAQMEPETIANMQG-VDLVLGTSEKYKVFEYLNEED 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 VD D + + + R AFL IQ+GC+ C+FC++P+ RG + Sbjct: 122 TTAIHVD---KTTDFYGAATTTADSHTR-----AFLKIQDGCNYVCSFCIIPFARGRSKA 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 S++ ++ A+KLI++G EI L G N+ + GEK T D++ +L +++GL RLR Sbjct: 174 ISINGALENAKKLIEDGFKEIVLTGVNIGEYETSS--GEKLT--DMVKALLDLEGLERLR 229 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P ++D L++ + H+P+QSG D ILK+M R++T +Y+++I++I + Sbjct: 230 LSSVEPNTITDELLEVFKSSPKFKDHFHIPLQSGDDEILKNMRRKYTVADYKKVINKIIT 289 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+ I +D I GFPGET + F T +LV ++ F YS R GT M + Sbjct: 290 AFPNAGIGADIICGFPGETKEQFENTYNLVKELPITHFHVFPYSKRKGTTAGRMDNHIHS 349 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 K ER+ L + F++ VG EVL E+ K+ G G + V + ++ Sbjct: 350 ATKKERVKSLLHLGEAKLALFSEDQVGSQSEVLFERRTKD-GLYTGYTTNYVKVYVETEL 408 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 I V + + K ++ EL+ Sbjct: 409 ELKNQIRSVYLKEYKDGKVFAELI 432 >gi|33862448|ref|NP_894008.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9313] gi|81577992|sp|Q7V8Z5|RIMO_PROMM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|33640561|emb|CAE20350.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9313] Length = 472 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 140/453 (30%), Positives = 237/453 (52%), Gaps = 40/453 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91 GC+ N D+ M + GY + +DA ++V+NTC I++ E V + +G Sbjct: 30 GCEKNRVDTEHMLGLLTEAGYSVSSDENDAAVVVVNTCSFIQDAREESVRTLIG------ 83 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151 + E G L++ AGC+AQ EE+L P +VG Y + ++L+R G+RV Sbjct: 84 ---LAEQGKELII-AGCLAQHFQEELLESIPEAKAIVGTGDYQHIVDVLKRVEAGERVNH 139 Query: 152 TDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 +F + D R+R A+L + EGCD C FC++P RG + SR + Sbjct: 140 VS-----EFPTF-VGDETLPRQRTTDQAVAYLKVAEGCDYRCAFCIIPKLRGDQRSRPVE 193 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267 +V EA +L + GV E+ L+ Q + G L G K F++LL +L E+ VR+ Y Sbjct: 194 SIVTEAHQLAEQGVQELILISQITTNY-GLDLYG-KPKFAELLQALGEVDIPWVRVHY-- 249 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++ ++ A+ ++ ++ YL LP+Q +L++MNR +++DRIR P Sbjct: 250 AYPTGLTPEVLAAYREVPNVLRYLDLPLQHSHPEVLRAMNRPWQTDVNERLLDRIREQLP 309 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D + + IVGFPGET+D F +++ + F +SP GT +++ ++VD ++ Sbjct: 310 DAVLRTTLIVGFPGETEDHFNHLAAFIERQRFDHVGVFTFSPEDGTAAADLPDRVDPSIA 369 Query: 388 A---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL--QSV 438 A +RL+ LQ+ + ++ N VG+ I+VLIE+H E G ++GR +P + + + Sbjct: 370 AARKDRLMALQQPISAER---NQRWVGRTIDVLIEQHNPETGAMIGRCDRFAPEVDGEVL 426 Query: 439 VLNSK---NHNIGDIIKVRITDVKISTLYGELV 468 VL S+ + G ++ V IT + L G+LV Sbjct: 427 VLPSEKGLQASPGTMVPVFITGSDVYDLTGQLV 459 >gi|217076998|ref|YP_002334714.1| Fe-S oxidoreductase [Thermosipho africanus TCF52B] gi|217036851|gb|ACJ75373.1| Fe-S oxidoreductase [Thermosipho africanus TCF52B] Length = 429 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 144/436 (33%), Positives = 239/436 (54%), Gaps = 28/436 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R V +YGC++N Y+S M + ++GY VN ++D+ V+N+C + +A K+ Sbjct: 2 RVSVLTYGCKLNQYESELMAEKLENEGYIVVNEEVESDVFVINSCVVTNEATRKIKQ--- 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144 +IR LK R G VVV GC +Q EE+ + V++V+G + L E Sbjct: 59 QIRRLK--RKFPGAK--VVVTGCYSQLGFEELEKEG--VDLVLGNNEKKYIDRYLGESGI 112 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI- 203 F + S+ED+F S+ + R R AF+ +Q+GC C++C + + RG +I Sbjct: 113 FVDKAYWNRNSLEDEFVFSSLAE----RTR---AFIKVQDGCTNTCSYCAIRFARGNKIR 165 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S+ + VV E +L++ EI + G N+ + GK +D + +LL SL +IKG R+ Sbjct: 166 SKPVDLVVSEVLRLVNKDYKEIVITGLNLGKF-GKDIDS---SLHELLRSLVKIKGDFRI 221 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ +P D+ + LI G + + +LH+P+QSGS +LK+M R +T +Y +++D IR Sbjct: 222 RLSSINPEDLDEELISLIGAEEKICNHLHIPLQSGSTDVLKNMRRNYTQDDYLRVVDSIR 281 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 V P+ +I++D +VGFPGE++ DF T+ +V ++ +++ +F+YS R T S M ++V Sbjct: 282 KVDPNFSITTDIMVGFPGESEKDFEETLKVVREVLFSKVHAFRYSDRPNTLASKMPKKVP 341 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 NVK ER+ L+K + VG+ +VLIE + K K+ S + + VL+ Sbjct: 342 GNVKKERVEVLEKLSAAVAKDYRKRLVGRKAKVLIESY---KNKIY--SGYDEYYVLHET 396 Query: 444 NH-NIGDIIKVRITDV 458 +H G I V I V Sbjct: 397 SHGEFGKIENVTIQAV 412 >gi|167040267|ref|YP_001663252.1| MiaB-like tRNA modifying protein YliG [Thermoanaerobacter sp. X514] gi|256750808|ref|ZP_05491693.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter ethanolicus CCSD1] gi|300914351|ref|ZP_07131667.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter sp. X561] gi|307724413|ref|YP_003904164.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter sp. X513] gi|238064963|sp|B0K1C1|RIMO_THEPX RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|166854507|gb|ABY92916.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter sp. X514] gi|256750391|gb|EEU63410.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter ethanolicus CCSD1] gi|300889286|gb|EFK84432.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter sp. X561] gi|307581474|gb|ADN54873.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter sp. X513] Length = 436 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 133/446 (29%), Positives = 230/446 (51%), Gaps = 28/446 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS +M + +GY VN + AD++++NTC E A + + + L Sbjct: 8 SLGCHKNTIDSEKMLAILKEKGYNIVNDENKADILIINTCGFIEDAKRESIECIIEMGKL 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K R+K ++ GC+++ +E+L+ P ++ V+G ++++ E++E+ GK V+ Sbjct: 68 KKHRLK-----YLIATGCLSERYNKELLKELPELDAVIGTGDFHKIAEVIEKIEKGKTVL 122 Query: 151 DTDYSV---EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + ++ ++ +R+ Y A+L I EGC C+FC++P RG SR + Sbjct: 123 EYGHANLLNDEGIQRILTTPNYY-------AYLKIAEGCSNACSFCIIPRLRGRYRSRKM 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 ++ EA +L+ GV E+ L+ Q+ + G+D +K LL +S+I GL +R Sbjct: 176 EDILREAEELVKKGVKELILIAQDTTKY---GVDVYKKFMLPQLLKEISKIDGLKWIRLL 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P +++ L++ + + ++ Y+ +P+Q D +LK MNR + ++I R+RS+ Sbjct: 233 YAYPDSVTEELVEEIKNNEKIVKYIDIPLQHSHDEVLKRMNRNTNKQKIEEVISRLRSI- 291 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P + I + F+VGFPGET+++F V + + + F YS GT M Q+ ++V Sbjct: 292 PYMVIRTTFMVGFPGETEEEFEDLKQFVKEKRFERVGVFTYSREEGTKSYYMKPQIKKSV 351 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL-- 440 K +R L + +E N + VG+ +EVLIE G E G GRS P + VV Sbjct: 352 KIKRQQELMEIQKEISYQHNLSKVGKQLEVLIE--GFEDGIYYGRSYMDAPEIDGVVYVK 409 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466 + K GD + ITD L GE Sbjct: 410 SDKKLKAGDFVVATITDAYEYDLVGE 435 >gi|154504516|ref|ZP_02041254.1| hypothetical protein RUMGNA_02020 [Ruminococcus gnavus ATCC 29149] gi|153794998|gb|EDN77418.1| hypothetical protein RUMGNA_02020 [Ruminococcus gnavus ATCC 29149] Length = 430 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 132/440 (30%), Positives = 238/440 (54%), Gaps = 24/440 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + + GC++N Y++ M++M GYE V + AD+ V+NTC + A K L Sbjct: 2 KKVALHNLGCKVNAYETEAMQEMLEHAGYEIVPFQEGADIYVINTCTVTNIADRKSRQML 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R R + D +VV AGC QA+ E+ + P +++V+G L L+ Sbjct: 62 HRARKM-------NPDAVVVAAGCYVQAQAEKQVI-DPCIDIVLGNNKKQDLLTALQAYE 113 Query: 145 FG----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + V+D +++ E +E L + G + + A++ +Q+GC++FC++C++PY RG Sbjct: 114 EAHGDLREVIDINHTKE--YENLHLTKQGEHTR----AYIKVQDGCNQFCSYCIIPYARG 167 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKG 259 SR+ VV E L NG E+ L G +++++ G+D E + L+ ++ EI+G Sbjct: 168 RVRSRAKEDVVAEVTDLAKNGYQEVVLTGIHLSSY---GIDFENEDNLLSLIRAVHEIEG 224 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R + PR +++ ++A L + P+ HL +QSG + LK MNRR+T+ E+ + Sbjct: 225 IKRIRLGSLEPRIITEEFVQAIAALPKMCPHFHLSLQSGCNETLKRMNRRYTSEEFYEKC 284 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + +R A+++D IVGFP ET+++F T + + KI + + FKYS R GT + M Sbjct: 285 EILRKYFEKPALTTDVIVGFPQETEEEFETTYEFLKKICFYETHIFKYSKREGTKAAVMQ 344 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQS 437 Q+ E +KA+R L + + + ++ ++ +G+ +EVL+E+ GK G + Sbjct: 345 GQIPEQIKAKRSARLIELGEKNRRAYEESFLGKTVEVLVEEKSDVNGKEMWTGHTKEYMK 404 Query: 438 VVLNSKNHNIGDIIKVRITD 457 + L S+ + I+ V+I D Sbjct: 405 IALESEKNLQNCILNVQIKD 424 >gi|39997663|ref|NP_953614.1| MiaB-like tRNA modifying enzyme [Geobacter sulfurreducens PCA] gi|39984555|gb|AAR35941.1| MiaB-like tRNA modifying enzyme [Geobacter sulfurreducens PCA] gi|298506603|gb|ADI85326.1| MiaB-like tRNA-modifying enzyme [Geobacter sulfurreducens KN400] Length = 434 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 140/444 (31%), Positives = 225/444 (50%), Gaps = 22/444 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSF 83 QR + + GC++N ++S M + +G+ V D+AD+ V+NTC + + AE Sbjct: 2 QRVAITTLGCKINQFESAAMTESLGREGFRLVPFEDEADIYVINTCTVTARTDAESRRLI 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +R +R VVV GC AQ + + P V++VVG + LL A Sbjct: 62 RRAMRRNPAAR--------VVVTGCYAQV-APDAVGELPGVSLVVGNSEKKGIAGLLRDA 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 ++++ +D S + E L + + + AFL +Q GCD FC++C+VP+ RG Sbjct: 113 VPAEKILVSDISRQRTVEALGLESFAEHTR----AFLQVQNGCDAFCSYCIVPHARGRSR 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVR 262 S V++ G E+ L G ++ A+ G D E + DLL + + R Sbjct: 169 SVPFRDVLEGIGTFAYQGFREVVLTGIHLGAY---GADLEPPASLLDLLEAADAEALVPR 225 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR + P ++SD LI V+ P+LH+P+QSGSD +L+ MNRR+TA +R+ ++R+ Sbjct: 226 LRVGSVEPHEISDGLIALMARSPVICPHLHIPLQSGSDSVLERMNRRYTAAFFRERVERL 285 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + PDI I D I GFPGETD++F AT+ L++ + A F +S R GTP + M QV Sbjct: 286 AAAVPDICIGCDVIAGFPGETDEEFAATLALLEGLPIAHLHVFPFSRREGTPAARMPGQV 345 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQSVVLN 441 D + ER L+ ++ +F+ +G+ + VL+ GKE + G S +V + Sbjct: 346 DGKIVRERAEVLRALSDRKRETFHRRFMGRDLPVLVLNGRGKE---VTGLSRNYITVRIE 402 Query: 442 SKNHNIGDIIKVRITDVKISTLYG 465 + + VRIT V+ + G Sbjct: 403 AVTPPPEGEVMVRITGVEADGVRG 426 >gi|148269242|ref|YP_001243702.1| MiaB-like tRNA modifying enzyme [Thermotoga petrophila RKU-1] gi|147734786|gb|ABQ46126.1| MiaB-like tRNA modifying enzyme [Thermotoga petrophila RKU-1] Length = 434 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 122/392 (31%), Positives = 222/392 (56%), Gaps = 21/392 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 ++++GC++N Y+S M + GY V D ++N+C + ++ +KV + IR Sbjct: 6 IETFGCKVNQYESEYMAEQLEKAGYV-VLPDGDVSYYIVNSCAVTKEVEKKVKRLIKSIR 64 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 N +N K +++ GC AQ +E R+ V++V+G + + + GK+ Sbjct: 65 N-RNRNAK------IILTGCFAQLSPDEA--RNLSVDMVLGIDEKKHIVDHINSLN-GKQ 114 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSL 207 V +E+ V G + + +++ +++GCD CT+C + RG +I S+ L Sbjct: 115 QVIVSEPGRPVYEK---VKGSFEDR--TRSYIKVEDGCDNTCTYCAIRLARGSKIRSKPL 169 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 DE +++ G EI + G N+ + GK + + ++LL + ++ G R+R ++ Sbjct: 170 EIFKDEFVEMVAKGYKEIVITGVNLGKY-GKDMGS---SLAELLKVIEKVPGDYRVRLSS 225 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 + D++D +++A L P+LH+ VQSGSD +LK M R++ ++ +++D++RS+ P Sbjct: 226 INVEDVNDEIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDP 285 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D +I++D IVGFPGETDDDF+ T+DLV+K+G+++ F++SPR GTP S M V E+ K Sbjct: 286 DFSITTDIIVGFPGETDDDFQKTLDLVEKVGFSRVHIFRFSPRPGTPASRMGGSVPESKK 345 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ERL L++K ++ + + +G+ +VL E Sbjct: 346 KERLDVLKEKAKDVSIRYRKRIIGKERKVLAE 377 >gi|332652498|ref|ZP_08418243.1| 2-methylthioadenine synthetase [Ruminococcaceae bacterium D16] gi|332517644|gb|EGJ47247.1| 2-methylthioadenine synthetase [Ruminococcaceae bacterium D16] Length = 430 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 128/444 (28%), Positives = 224/444 (50%), Gaps = 16/444 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + GC++N Y++ +E + +G+ V +AD V+NTC + + +K + Sbjct: 2 RIAFYTLGCKVNQYETQALEQLVTQRGHTLVPFDGEADAYVINTCSVTAVSDKKSRQVIR 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R R K D ++ V GC +Q +++ + V++V G +LLE+ Sbjct: 62 RAR-------KTAPDAILAVCGCYSQTHPDDMDKLE--VDLVAGTGDRTGFVDLLEQTWQ 112 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + ++D F+R + + G T A L I++GC FC++C++PY RG S Sbjct: 113 KHQSITV---LDDPFQRRTFENLPAGGLEGRTRAMLKIEDGCVNFCSYCIIPYARGRIRS 169 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 L+ +A+ L++ G EI L G +++W G+ L+G+ + + +R+R Sbjct: 170 LPLADCAAQAKSLVEAGYQEIVLTGIEISSW-GQDLEGKPSLIDAVEAICQAVPSHIRVR 228 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + PR +++ + L+ L P+ HL +QSG D +L MNR++ + Y + + + Sbjct: 229 LGSLEPRTITEDFCRRCAALENLCPHFHLSMQSGCDTVLARMNRKYDSSRYYESVQFLHE 288 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 V AI++D IVGFPGET+D+F+ T+D + K G+A F YS R GTP + M QV Sbjct: 289 VYDRPAITTDLIVGFPGETEDEFQQTLDFIQKCGFAAMHIFPYSRRPGTPAAKMPGQVPN 348 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +K +R + + + ++ D+ VGQ + VL E+ + G +G + V + S Sbjct: 349 AIKEDRAHRAAEIAQNMEYAYLDSFVGQTVPVLFEE--ERDGVWLGHTTHYCQVGVTSTE 406 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 + +VR+T + S L GELV Sbjct: 407 SLHNQLRQVRLTGREGSQLIGELV 430 >gi|281411540|ref|YP_003345619.1| MiaB-like tRNA modifying enzyme [Thermotoga naphthophila RKU-10] gi|281372643|gb|ADA66205.1| MiaB-like tRNA modifying enzyme [Thermotoga naphthophila RKU-10] Length = 434 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 122/392 (31%), Positives = 222/392 (56%), Gaps = 21/392 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 ++++GC++N Y+S M + GY V D ++N+C + ++ +KV + IR Sbjct: 6 IETFGCKVNQYESEYMAEQLEKAGYV-VLPDGDVSYYIVNSCAVTKEVEKKVKRLIKSIR 64 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 N +N K +++ GC AQ +E R+ V++V+G + + + GK+ Sbjct: 65 N-RNRNAK------IILTGCFAQLSPDEA--RNLSVDMVLGIDEKKHIVDHINSLN-GKQ 114 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSL 207 V +E+ V G + + +++ +++GCD CT+C + RG +I S+ L Sbjct: 115 QVIVSEPGRPVYEK---VKGSFEDR--TRSYIKVEDGCDNTCTYCAIRLARGSKIRSKPL 169 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 DE +++ G EI + G N+ + GK + + ++LL + ++ G R+R ++ Sbjct: 170 EIFKDEFVEMVAKGYKEIVITGVNLGKY-GKDMGS---SLAELLKVIEKVPGDYRVRLSS 225 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 + D++D +++A L P+LH+ VQSGSD +LK M R++ ++ +++D++RS+ P Sbjct: 226 INVEDVNDEIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDP 285 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D +I++D IVGFPGETDDDF+ T+DLV+K+G+++ F++SPR GTP S M V E+ K Sbjct: 286 DFSITTDIIVGFPGETDDDFQKTLDLVEKVGFSRVHIFRFSPRPGTPASRMGGSVPESKK 345 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ERL L++K ++ + + +G+ +VL E Sbjct: 346 KERLDVLKEKAKDVSIRYRKRIIGKERKVLAE 377 >gi|126659494|ref|ZP_01730627.1| hypothetical protein CY0110_07204 [Cyanothece sp. CCY0110] gi|126619228|gb|EAZ89964.1| hypothetical protein CY0110_07204 [Cyanothece sp. CCY0110] Length = 414 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 133/436 (30%), Positives = 223/436 (51%), Gaps = 33/436 (7%) Query: 44 MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103 M + QGY + + AD +++NTC ++A E+ L + + Sbjct: 1 MLGLLAQQGYSIDANEELADYVIVNTCSFIQEAREESVRTLVELAEANKK---------I 51 Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163 +++GC+AQ EE+L+ P +VG Y ++ ++++R G+RV T+ S F Sbjct: 52 IISGCMAQHFQEELLQELPEAVALVGTGDYQKIVDVVQRVETGERV--TEVSQNPTF--- 106 Query: 164 SIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220 + D R R A+L + EGCD C FC++P+ RG + SRS+ +V EA++L + Sbjct: 107 -VADEMTPRYRTTNEAVAYLRVAEGCDYRCAFCIIPHLRGNQRSRSIESIVTEAQQLAEQ 165 Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIK 279 GV EI L+ Q + G L GE ++LL L ++ +R+ Y ++P +++ +I Sbjct: 166 GVREIILISQITTNY-GLDLYGEP-KLAELLRVLGKVDIPWIRIHY--AYPTGLTEKVID 221 Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339 A + ++PYL LP+Q ILK+MNR II+R++ P+ + + FIVGF Sbjct: 222 AIRETPNILPYLDLPLQHSHPAILKAMNRPWQGQVNDNIIERLKEAIPNAILRTTFIVGF 281 Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQK 396 PGET++ F ++ V + + F +SP TP M QV + ER L+ +Q+ Sbjct: 282 PGETEEHFEHLINFVQRHEFDHVGVFTFSPEEETPAYQMPNQVPSEIAKERRNYLMEIQQ 341 Query: 397 KLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHNIGDIIK 452 + ++ N CVGQ +EVLIE+ + + +GRS P + VV + I+ Sbjct: 342 PIAAKK---NQKCVGQTVEVLIEQENPKTEECIGRSIRFAPEVDGVVYVRGKGQLNSIMP 398 Query: 453 VRITDVKISTLYGELV 468 V+ITD + LYG+++ Sbjct: 399 VKITDADVYDLYGKVI 414 >gi|332704961|ref|ZP_08425047.1| SSU ribosomal protein S12P methylthiotransferase [Lyngbya majuscula 3L] gi|332356313|gb|EGJ35767.1| SSU ribosomal protein S12P methylthiotransferase [Lyngbya majuscula 3L] Length = 440 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 134/450 (29%), Positives = 224/450 (49%), Gaps = 29/450 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC+ N D+ M + GY+ + + AD +++NTC E+A + L + Sbjct: 9 ISHLGCEKNRIDTEHMLGLLVQAGYQVDANEELADYVIVNTCSFIEEARRESVRTLVELA 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 N +I V+ GC+AQ ++L P VVG Y+++ ++++R G R Sbjct: 69 E-ANQKI--------VITGCMAQHFQSQLLEELPEAVAVVGTGDYHKIVDVIQRVETGDR 119 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V + S E + I D R R + A+L + EGCD C+FC++P+ RG + SR Sbjct: 120 V--QEVSTEPSY----IADETTPRYRTTSEGVAYLRVAEGCDYRCSFCIIPHLRGKQRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRL 263 ++ +V EA +L GV E+ L+ Q + GLD + ++LL +L E+ +R+ Sbjct: 174 TIESIVAEAEQLASQGVQELILISQITTNY---GLDIYSEPKLAELLRALGEVDIPWIRI 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P ++ +IKA + ++PYL LP+Q IL+SMNR II +++ Sbjct: 231 HY--AYPTGLTPSVIKAIQETHNVLPYLDLPLQHSHPEILRSMNRPWQGRVNDAIIKQLK 288 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PD + + FIVGFPGET+ F ++ V F +S GT + Q+ Sbjct: 289 TALPDAVLRTTFIVGFPGETEQHFEHLLEFVQHHECDHVGVFTFSAEEGTAAYKLPNQLP 348 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439 + V R L + + N C+G+I++VLIE+ G+L+GRS P + +V Sbjct: 349 QGVMDARRDALMAVQQPISLKKNQNCLGKIVDVLIEQENPLTGELIGRSARFAPEVDGLV 408 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + ++G I+ V ITD + LYG +V+ Sbjct: 409 YVQGDASLGTIVSVEITDSDVYDLYGSVVL 438 >gi|87125226|ref|ZP_01081072.1| hypothetical protein RS9917_07410 [Synechococcus sp. RS9917] gi|86166995|gb|EAQ68256.1| hypothetical protein RS9917_07410 [Synechococcus sp. RS9917] Length = 458 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 138/455 (30%), Positives = 231/455 (50%), Gaps = 44/455 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91 GC+ N D+ M + GY + DA ++V+NTC I++ E V + +G Sbjct: 16 GCEKNRVDTEHMLGLLEQAGYGVSSDEQDASVVVVNTCSFIQDAREESVRTLVG------ 69 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151 + E G L++ AGC+AQ EE+L P +VG Y + ++L+R G+RV Sbjct: 70 ---LAEQGKELII-AGCLAQHFQEELLESLPEAKAIVGTGDYQHIVDVLQRVEAGERVNQ 125 Query: 152 TD----YSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + R +R G A+L + EGCD C FC++P+ RG + SR Sbjct: 126 VSPVPTFVANEHLPR--------HRTSGEAVAYLKVAEGCDYRCAFCIIPHLRGNQRSRP 177 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRY 265 + +V EA +L GV E+ L+ Q + G L G K +DLL++L E++ VR+ Y Sbjct: 178 IESIVAEAHQLAAQGVKELILISQITTNY-GLDLYG-KPRLADLLHALGEVEIPWVRVHY 235 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P ++ ++ A+ D+ ++PYL LP+Q +L++MNR A +++D+IR Sbjct: 236 --AYPTGLTPEVLAAYRDVSNVLPYLDLPLQHSHPDVLRAMNRPWQADVNERLLDQIRDQ 293 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD + + IVGFPGET+ F +++ + F +SP GT + + +V+ Sbjct: 294 LPDAVLRTTLIVGFPGETEAHFEHLATFLERQRFDHVGVFTFSPEDGTAAATLPGRVEAE 353 Query: 386 V---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438 V + +RL+ LQ+ + + N+A VG+ ++VLIE+H G ++GR +P + Sbjct: 354 VAVARKDRLMMLQQPI---SAARNNAWVGRTVDVLIEQHNPSSGAMIGRCARFAPEVDGE 410 Query: 439 VL-----NSKNHNIGDIIKVRITDVKISTLYGELV 468 VL N+ G ++ V+IT + L G LV Sbjct: 411 VLVQPGANNLQAGPGTMVPVQITGGDVYDLSGHLV 445 >gi|301107328|ref|XP_002902746.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora infestans T30-4] gi|262097864|gb|EEY55916.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora infestans T30-4] Length = 594 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 214/387 (55%), Gaps = 35/387 (9%) Query: 47 MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNS--RIKEGGDLLVV 104 + GY + D AD+++LNTC +R+ A K+++ L +R +K R++ V Sbjct: 84 ILLESGYTSAPAADAADVVLLNTCAVRDNAEAKIWNRLESLRQVKAKLLRLQHKKVQTVG 143 Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRVVDTDYSVEDKFERL 163 V GC+A+ +++L +V++VVGP Y +P LL G+ V+ S+++ + + Sbjct: 144 VLGCMAERLKKKLLDSDKMVDLVVGPDAYRDIPNLLRVVLGSGEAAVNVQLSLDETYADI 203 Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223 + V + +AF++I GC+ C++C+VP+TRG E SR ++ +VDE R L D GV Sbjct: 204 APVRADPH---SPSAFVSIMRGCNNMCSYCIVPFTRGRERSRVMNSIVDEVRALSDQGVK 260 Query: 224 EITLLGQNVNAW----------RGKGL-------------DGEKCTFSDLLYSLSEIKGL 260 E+ LLGQNVN++ +G+G D F+DLL +S + Sbjct: 261 EVVLLGQNVNSYHDKKSEGAAEKGRGYVSSTGFSNMFRSRDAPGFRFADLLDKVSRVDPE 320 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +RLR+T+ HP+D + ++ + + +H+P QSGS +L+ M R ++ Y ++D Sbjct: 321 MRLRFTSPHPKDFPNEVLDLVNERPNICKQIHMPAQSGSTTMLERMRRGYSREAYLALVD 380 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R+ P +AISSDFI GF GET+++ T+ L+ ++ Y QAF F YS R T ++ +E Sbjct: 381 NMRARIPGVAISSDFIAGFCGETEEEHADTISLMRQVCYDQAFMFAYSVRARTHAAHRME 440 Query: 381 QVDENVKAERLLCLQKKLREQQVSFND 407 D+ + E+L ++LRE +F++ Sbjct: 441 --DDVTQEEKL----RRLREVIDTFSE 461 >gi|288572914|ref|ZP_06391271.1| MiaB-like tRNA modifying enzyme [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568655|gb|EFC90212.1| MiaB-like tRNA modifying enzyme [Dethiosulfovibrio peptidovorans DSM 11002] Length = 432 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 138/445 (31%), Positives = 237/445 (53%), Gaps = 27/445 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 +K+ GC+ N+Y++ + F G R+ +D D VL +C + +A K + R R Sbjct: 8 IKALGCRTNLYEADAIASAFTRAGC-RITEGNDWDAAVLVSCSVTAEADRKSRQIVRRFR 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-- 146 EG LVV GC AQ + + + +V + +P ++E R G Sbjct: 67 RAS----PEG---LVVATGCWAQGISYDEAKALGVDLLVGNRRKDEVVPLVMETLRGGVP 119 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V++T + ++E L + +R T AFL +Q+GCD FC++C++P+ RG +SR Sbjct: 120 HGVMET-VATSSRWESLFL-----DRPSLTTRAFLKVQDGCDHFCSYCIIPFLRGKPVSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L + E R ++++G EI L G ++ + +G G +DLL ++ I G+ R+R+ Sbjct: 174 PLDDLEREVRSVVESGCPEIVLTGVHLGLYGREGGPG----LADLLRAVGAIDGVKRIRF 229 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 + P + D L+ A +++ P+LHLP+QSG DR+L +M R HTA EY ++DRI+S Sbjct: 230 GSLEPFSVGDDLLDAMAEIESFCPHLHLPLQSGDDRVLNAMGRGHTADEYLSLLDRIKSA 289 Query: 326 R-PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 D+ IS+D +VGFPGE D F T+ +++ G + SF YSPR GT +++ ++ + Sbjct: 290 MGEDVHISTDILVGFPGEDDLAFANTLSVLELGGIGRIHSFPYSPRKGTKAASLPDRPPK 349 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQSVVLNSK 443 ++ ER + +K RE + VG+ +LIE+ +G++ G +P +++ L Sbjct: 350 SIAEERCKTVIEKGRELLDRYVSRWVGKEELLLIEE--VSEGRVSGYTPHFIRLSALGCG 407 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 + I++ RI D+ L GE++ Sbjct: 408 --KVDGIVRCRIADMVDGELRGEVI 430 >gi|291538907|emb|CBL12018.1| SSU ribosomal protein S12P methylthiotransferase [Roseburia intestinalis XB6B4] Length = 444 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 136/457 (29%), Positives = 227/457 (49%), Gaps = 32/457 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84 + S GC N+ D+ M M G E + +AD+I++NTC I + E + + L Sbjct: 6 KLLFVSLGCDKNLVDTEFMLGMLRDDGIEMTDDEQEADIIIVNTCCFINDAKEESINTIL 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 K +R+K ++V GC+AQ EEI++ P V+ ++G +Y + + ++ Sbjct: 66 EMAELKKEARLKS-----LIVTGCLAQRYKEEIVKEIPEVDAILGTNSYEDIVNAVHQSL 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDG--GYNRKRGVT-----AFLTIQEGCDKFCTFCVVPY 197 GK +E ++G + KR VT A+L I EGC+K CT+C++PY Sbjct: 121 EGKH-----------YENFKTLEGLPTLHTKRSVTTGGHFAYLKIAEGCNKRCTYCIIPY 169 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG S + ++++A++L+ G E+ L+ Q + G L GEK + LL L++I Sbjct: 170 IRGNYRSVPMEDLIEQAKELVAAGAKELILVAQETTLY-GVDLYGEK-SLHRLLDELNKI 227 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 + L +R +P ++ + LI A + YL +P+Q +D ILK M RR + + + Sbjct: 228 EDLFWIRIMYCYPEEIYEGLIDAMIRNQKVCHYLDIPIQHANDTILKRMGRRTSNADLVK 287 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 II +R PDI + + I GFPGET + M ++ + + + +F YSP GTP + Sbjct: 288 IITHLRERIPDITLRTTLICGFPGETQEMHEELMQFINDMEFDRLGAFTYSPEEGTPAAE 347 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433 +QVDEN+K + + + E N+ G+ + V IE ++ VGR+ P Sbjct: 348 FTDQVDENLKKDWQADVMELQEEIIFDKNETMKGRELYVFIEGKVSDENAYVGRTYRDAP 407 Query: 434 WLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + + + + + GDI KVR+T L GEL+ Sbjct: 408 DVDGYIFINTDEELMTGDIAKVRVTGAYEYDLIGELI 444 >gi|304316847|ref|YP_003851992.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778349|gb|ADL68908.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 437 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 137/451 (30%), Positives = 235/451 (52%), Gaps = 34/451 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS +M + +GY VN+ +DAD++++NTC E A + +++ + L Sbjct: 8 SLGCAKNTVDSEKMLGIIKEKGYNIVNNENDADVLIINTCGFIESAKRESINYIIEMGKL 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K R+K ++ AGC+++ EE+L P ++ V+G + ++ E++E GKRV+ Sbjct: 68 KEKRLKS-----LIAAGCLSERYKEELLSNLPELDAVIGTGDFLKISEIIESTLNGKRVL 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + ++ E + D R +L I EGC+ C+FC++P RG S + Sbjct: 123 EYGHADE-------LDDANSPRMLSTPKHYGYLKIAEGCNNKCSFCIIPKLRGHYRSVKI 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +V+EA+ + NGV E+ L+ Q+ + G+D +K LL LS+I + +R Sbjct: 176 EDLVNEAKIMAKNGVRELILIAQDTTKY---GIDIYKKFMLPTLLRELSKIDEIKWIRIL 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P ++D LI+ L+ Y+ +P+Q ++ +LK M R + +IID++R++ Sbjct: 233 YAYPDSITDELIEEIRTNSKLLKYVDMPLQHSNNNVLKRMKRNTQKEKIEEIIDKLRTI- 291 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 + I + FIVGFPGETD +F D + + + + F YS T M QV E + Sbjct: 292 SGMVIRTTFIVGFPGETDTEFDDLKDFIKEKKFNKLGVFTYSREEDTEAYGMPNQVPEKI 351 Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV- 438 K +R ++ LQ+ + ++ N + +G +E++IE G + G GRS P + V Sbjct: 352 KQKRYNEIMLLQRNI---SLNNNKSLIGTELEIVIE--GYKDGLYYGRSYIDAPDIDGVT 406 Query: 439 -VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + + NIGD +KVRI+ L GEL+ Sbjct: 407 FVKSDRKLNIGDFVKVRISKAFDYDLMGELL 437 >gi|237738331|ref|ZP_04568812.1| radical SAM domain-containing protein [Fusobacterium mortiferum ATCC 9817] gi|229420211|gb|EEO35258.1| radical SAM domain-containing protein [Fusobacterium mortiferum ATCC 9817] Length = 445 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 140/438 (31%), Positives = 233/438 (53%), Gaps = 31/438 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 S GC N+ DS + + E + + +AD++++NTC A E+ + Sbjct: 7 SLGCSKNLVDSEHYLGILSKRKEMELTSELSEADIVIVNTCGFIGDAKEESIETI----- 61 Query: 90 LKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L+ S KE G+L ++VAGC+AQ EEIL+ P V+ V+G ++ ++++ K+ Sbjct: 62 LEVSEFKETGNLKKLIVAGCLAQKYSEEILKELPEVDAVIGTGDIDKIEKVVDEILENKK 121 Query: 149 VVDTD---YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 VV+T + ER+ TA+L I EGC++ CT+C++P RG SR Sbjct: 122 VVETKNMTFLANANTERVLTTASH-------TAYLKISEGCNRACTYCIIPQMRGRLRSR 174 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S+ +V+EA++L+ +GV EI LL Q + G L G+K + L+ L +I+GL LR Sbjct: 175 SIEDIVEEAKRLVASGVREINLLAQETTEY-GIDLYGDK-KLAALMKELCKIEGLKWLRT 232 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 HP ++D LI+ + + Y +P+Q SD IL++M R + + + +++RIR Sbjct: 233 YYMHPEYVTDELIEVMKSEEKICKYFDVPIQHVSDNILRNMARAKSGEQVKDVLNRIRKA 292 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ I + IVGFPGET+++F+ MD V + + A FKYS T N+ QV E Sbjct: 293 IPEATIRTTLIVGFPGETEENFQELMDYVREFEFDYAGVFKYSREEDTVAYNLPNQVPEE 352 Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQS 437 +K +R L+ LQ ++ E++ N +G+ IEV+I+ E +G+ G++ + Sbjct: 353 IKEKRYAELVNLQSEIAERK---NRRLLGEEIEVMIDGVSSESEYLLEGRTRGQALEIDG 409 Query: 438 VVLNSK-NHNIGDIIKVR 454 VL + G+I+KV+ Sbjct: 410 KVLTTDGTAKPGEIVKVK 427 >gi|313897359|ref|ZP_07830902.1| tRNA methylthiotransferase YqeV [Clostridium sp. HGF2] gi|312957729|gb|EFR39354.1| tRNA methylthiotransferase YqeV [Clostridium sp. HGF2] Length = 441 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 132/445 (29%), Positives = 231/445 (51%), Gaps = 24/445 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + + GC++N Y+S E +GYE+V+ + AD+ ++NTC + A K Sbjct: 4 FAIATLGCKVNTYESQGYESALLEKGYEQVSFKEKADVYIINTCAVTNTAGSKS------ 57 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 R ++ I + L+ V GC AQ E+ L + +++++G RL +++E Sbjct: 58 -RQKIHAAIALNPEALIAVVGCYAQTASEQ-LEQDANIDILLGSDGKSRLADMIEEGLRK 115 Query: 147 KRVVDTDYSVE--DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 KR + V + FE L I + + AFL IQ+GC++FC++C++P+ RG E S Sbjct: 116 KRPQKLIHDVRKVNVFEALPI----HRFEHQTRAFLKIQDGCNQFCSYCIIPFARGAERS 171 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 +V+ AR L ++G EI L G + + G G++ C + + EI L R+R Sbjct: 172 LPEDEVLAIARSLSESGHREIVLSGIHTGRY-GNGINSSLCQLMKRM--VKEIPKLQRIR 228 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ +++D L++ + + +LH+PVQS + +LK+MNR +T + + +D IRS Sbjct: 229 ISSIEMNEITDELLEFIKGEEKIARHLHIPVQSANTTVLKNMNRPYTIAWFMERVDYIRS 288 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + PDI+ISSD I GFP E+++ F+ T+D + ++ + F YS R T + M ++ Sbjct: 289 LIPDISISSDVITGFPQESEEQFQDTLDNIARMRLSFLHVFPYSRRDHTAAAQMSGHLEN 348 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +K ER L ++ ++ +G+ + V+ EK ++ GKL+G S V + Sbjct: 349 KIKKERASRLANLSKQLYTAYKQNFIGKEVSVIFEK--EKDGKLIGHSSEYLEVAAAAPL 406 Query: 445 HNIGDIIKVRITDVKISTLYGELVV 469 + + VRIT L G+L+V Sbjct: 407 AWLHTMHTVRIT-----ALDGDLLV 426 >gi|323701900|ref|ZP_08113570.1| MiaB-like tRNA modifying enzyme YliG [Desulfotomaculum nigrificans DSM 574] gi|323533204|gb|EGB23073.1| MiaB-like tRNA modifying enzyme YliG [Desulfotomaculum nigrificans DSM 574] Length = 445 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 132/449 (29%), Positives = 228/449 (50%), Gaps = 24/449 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + + ++ +AD++++NTC + A E+ + + Sbjct: 9 SLGCPKNLVDSEVMLGLLREAKFNITSNEAEADVLIVNTCGFIQSAKEESIRHIFELAQY 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP----QTYYRLPELLERARFG 146 K+ G +VV GC+AQ +E++ P ++ +VGP + E+L + Sbjct: 69 KD----RGRCQALVVTGCLAQRYHQELMEEIPEIDALVGPGHINDIVQIIKEILANKQRK 124 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + +Y ++ RL + Y TA++ + EGCD C +C +P RG SR Sbjct: 125 SHICEPEYIYDEYAPRL-LSTPTY------TAYIKVAEGCDNRCAYCAIPNIRGRFRSRP 177 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L +V EA+ L+ NG EI L+ Q+ + G+ + G+ + LL+ L +I L +R Sbjct: 178 LESIVAEAKTLVANGTREIILIAQDTTRY-GQDIYGQY-SLDKLLWLLQDIPDLKWIRIL 235 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P +D LIKA L + Y+ LPVQ ++ IL++M R + R +IDR+R Sbjct: 236 YCYPNRFTDGLIKAIAQLPKVCKYIDLPVQHANNEILRAMGRPGNQQQVRSLIDRLRREI 295 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P + + + FIVGFPGET++ F+ ++ + ++ + +A F YS GTP + + Q+ E + Sbjct: 296 PGLVLRTSFIVGFPGETEEQFQELLNFMQQVKFDRAGVFTYSQEEGTPAAELPNQIPEEI 355 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEK---GKLVGRSPWLQSVV-- 439 K ER RE ++ N +GQ++EVL+EK G + G+ +G +P + V Sbjct: 356 KQERYHRAMTLQREISLAQNQRRIGQVLEVLVEKVIDGSKNIYAGRSMGDAPEIDGTVEI 415 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++++ G+ + V+IT L GEL Sbjct: 416 VSTRPLISGEFVHVKITRALEYDLMGELA 444 >gi|124021929|ref|YP_001016236.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9303] gi|238066589|sp|A2C661|RIMO_PROM3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|123962215|gb|ABM76971.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9303] Length = 472 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 141/453 (31%), Positives = 236/453 (52%), Gaps = 40/453 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91 GC+ N D+ M + GY + +DA ++V+NTC I++ E V + +G Sbjct: 30 GCEKNRVDTEHMLGLLTEAGYSVSSDENDAAVVVVNTCSFIQDAREESVRTLIG------ 83 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151 + E G L++ AGC+AQ EE+L P +VG Y + ++L+R G+RV Sbjct: 84 ---LAEQGKELII-AGCLAQHFQEELLESIPEAKAIVGTGDYQHIVDVLKRVEAGERV-- 137 Query: 152 TDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 S F + D R+R A+L + EGCD C FC++P RG + SR + Sbjct: 138 NRVSAFPTF----VGDETLPRQRTTDQAVAYLKVAEGCDYRCAFCIIPKLRGDQRSRPVE 193 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267 +V EA +L + GV E+ L+ Q + G L G K F++LL +L E+ VR+ Y Sbjct: 194 SIVAEAHQLAEQGVQELILISQITTNY-GLDLYG-KPKFAELLQALGEVDIPWVRVHY-- 249 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++ ++ A+ ++ ++ YL LP+Q +L++MNR +++DRIR P Sbjct: 250 AYPTGLTPEVLAAYREVPNVLRYLDLPLQHSHPDVLRAMNRPWQTDVNERLLDRIREQLP 309 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D + + IVGFPGET+D F +++ + F +SP GT +++ +VD ++ Sbjct: 310 DAVLRTTLIVGFPGETEDHFNHLAAFIERQRFDHVGVFTFSPEDGTAAADLPNRVDPSIA 369 Query: 388 A---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL--QSV 438 A +RL+ LQ+ + ++ N VG+ I+VLIE+H E G ++GR +P + + + Sbjct: 370 AARKDRLMALQQPISAER---NQRWVGRTIDVLIEQHNPETGAMIGRCDRFAPEVDGEVL 426 Query: 439 VLNSK---NHNIGDIIKVRITDVKISTLYGELV 468 VL S+ + G ++ V IT + L G+LV Sbjct: 427 VLPSEKGLQASPGTMVPVFITGSDVYDLTGQLV 459 >gi|116073885|ref|ZP_01471147.1| hypothetical protein RS9916_35582 [Synechococcus sp. RS9916] gi|116069190|gb|EAU74942.1| hypothetical protein RS9916_35582 [Synechococcus sp. RS9916] Length = 513 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 133/454 (29%), Positives = 232/454 (51%), Gaps = 42/454 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91 GC+ N D+ M + GY + +DA+++V+NTC I++ E V + +G Sbjct: 71 GCEKNRVDTEHMLGLLSEAGYGVSSDENDANVVVVNTCSFIQDAREESVRTLVG------ 124 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV- 150 + E G L++ AGC+AQ +E+L P +VG Y + ++L+R G+RV Sbjct: 125 ---LAEQGKELII-AGCLAQHFQDELLESLPEAKAIVGTGDYQHIVDVLKRVEAGERVKQ 180 Query: 151 ---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + + ++ R Y A+L + EGCD C FC++P+ RG + SR + Sbjct: 181 VSENPTFVGDENLPR-------YRTTGEAVAYLKVAEGCDYRCAFCIIPHLRGDQRSRPI 233 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYT 266 +V EA +L GV E+ L+ Q + G L G K +DLL +L E++ +R+ Y Sbjct: 234 ESIVAEAHQLAAQGVQELILISQITTNY-GLDLYG-KPRLADLLRALGEVEIPWIRVHY- 290 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P ++ ++ A+ ++ ++PYL LP+Q +L++MNR A +++D+IR Sbjct: 291 -AYPTGLTPDVLAAYREVPNVLPYLDLPLQHSHPDVLRAMNRPWQADVNERLLDQIREQL 349 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD + + IVGFPGET++ F +++ + F +SP GTP + + + V E V Sbjct: 350 PDAVLRTTLIVGFPGETEEQFEHLASFIERQRFDHVGVFTFSPEDGTPAATLPDHVPEEV 409 Query: 387 ---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439 + ++L+ LQ+ + + N + VG+ ++VLIE+H G+++GR +P + V Sbjct: 410 AIARKDKLMGLQQPI---SAAGNASWVGRTVDVLIEQHNPTTGEMIGRCARFAPEVDGEV 466 Query: 440 L-----NSKNHNIGDIIKVRITDVKISTLYGELV 468 L N G ++ V IT + L G +V Sbjct: 467 LVQPGDNGIQAGPGTMVPVLITGADVYDLTGRIV 500 >gi|134299776|ref|YP_001113272.1| MiaB-like tRNA modifying protein YliG [Desulfotomaculum reducens MI-1] gi|238065335|sp|A4J5U4|RIMO_DESRM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|134052476|gb|ABO50447.1| SSU ribosomal protein S12P methylthiotransferase [Desulfotomaculum reducens MI-1] Length = 444 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 146/449 (32%), Positives = 227/449 (50%), Gaps = 24/449 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + + N+ +AD +++NTC E A E+ + + Sbjct: 8 SLGCPKNLVDSEVMLGLLRENNFTITNNEANADALIVNTCGFIESAKEESIRHIFELAQY 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--- 147 K + G ++V GC+AQ +E+L P ++V++GP + E++ A GK Sbjct: 68 K----ERGKCKALIVTGCLAQRYSKELLEEIPEIDVILGPGHVSNIVEVVNHALEGKDRH 123 Query: 148 -RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 RV D Y ++ RL + Y TA++ I EGCD C +C +P RG SR Sbjct: 124 TRVEDLLYIYDEHSPRL-LSTPSY------TAYVKIAEGCDNRCAYCAIPDIRGKFRSRP 176 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + + E + L++ GV EI L+ Q+ + G L GE LL L I+GL +R Sbjct: 177 IESIEAEVKDLVEKGVREIILIAQDTTRY-GLDLYGEY-RLDQLLERLGPIQGLQWIRLL 234 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P +D LIKA + + Y+ LP+Q ++ IL++M R T + R +I ++R+ Sbjct: 235 YCYPNRFTDQLIKAMAENPNICKYIDLPMQHAANDILRAMKRPVTKQQARILIQKLRTEI 294 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P I I + FIVGFPGET++ F+ +D ++++ + +A F YS GTP + M Q+ + Sbjct: 295 PGIVIRTSFIVGFPGETEEHFKELLDFMEEVKFDRAGVFTYSQEEGTPAAEMPNQIHGRI 354 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKGKLVGRS----PWLQSVV-- 439 K ER K RE +S N +GQ IEV++E+ + KG GRS P + V Sbjct: 355 KQERYHRAMKLQREISLSQNQKRIGQEIEVVVEEVTDQSKGVYTGRSSYDAPEIDGTVEF 414 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 +S+ IGD +KV+I L GEL Sbjct: 415 TSSRPLRIGDFVKVKINRALEYDLMGELA 443 >gi|332981525|ref|YP_004462966.1| 30S ribosomal protein S12P methylthiotransferase [Mahella australiensis 50-1 BON] gi|332699203|gb|AEE96144.1| SSU ribosomal protein S12P methylthiotransferase [Mahella australiensis 50-1 BON] Length = 440 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 141/456 (30%), Positives = 236/456 (51%), Gaps = 26/456 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P + S GC N+ DS M +GY N +AD+I++NTC E A ++ + Sbjct: 1 MPYNIGMISLGCPKNLVDSETMLAELADKGYVITNDPKEADVIIINTCSFIESAKQESIN 60 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L+ +R KE G ++A GC++Q E++L P +N V+G Y+ + +++ Sbjct: 61 TI-----LEMARYKEIGRCKGLIAVGCLSQQYKEQLLDEIPELNAVIGTGDYHSIGLVVD 115 Query: 142 RARFGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + G +V D SVE +R+ A++ I EGCD C++C++P+ Sbjct: 116 KILNGGKVAYFEGGDVSVEGIEKRIL-------STPPYMAYVKIAEGCDNGCSYCIIPFL 168 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG SR + +++E ++L+D GV EI L+ Q+ + + G+ + G K ++LL+ L I Sbjct: 169 RGPYRSRPMENIIEECKELVDRGVKEIILIAQDTSVY-GRDIYG-KPRLAELLHELDNIN 226 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 + +R +P ++D LI+A + Y+ +P+Q +D+IL M RR + + + + Sbjct: 227 NIEWIRVLYCYPDYVNDELIEAIVQSRHVCHYIDIPIQHINDKILAKMGRRSRSNDIKGV 286 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I+R+R P IAI + IVGFPGETD DF+ D V++ F YS GT + M Sbjct: 287 IERLRKCIPGIAIRTSLIVGFPGETDRDFQMLRDFVEQYRLDNVGVFTYSQEEGTIAAAM 346 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434 EQV E+VK ER + + R+ + N +G +VL+E G G VGR +P Sbjct: 347 PEQVAEDVKQERYKSIMRVQRKIVLEKNKERIGFSYKVLVE--GCNNGVYVGRGYMYAPE 404 Query: 435 LQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 + ++ + K + G ++ V+I VK L GE + Sbjct: 405 IDGLIYFTSDKPLDAGQMVYVKIKGVKDYDLTGEAI 440 >gi|148263556|ref|YP_001230262.1| MiaB-like tRNA modifying enzyme [Geobacter uraniireducens Rf4] gi|146397056|gb|ABQ25689.1| MiaB-like tRNA modifying enzyme [Geobacter uraniireducens Rf4] Length = 444 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 133/443 (30%), Positives = 224/443 (50%), Gaps = 19/443 (4%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI- 87 + + GC++N ++S M + G++ + D AD+ V+NTC + + + + R Sbjct: 14 ITTLGCKINQFESAAMSEALGKDGFQVIPFDDVADIYVINTCTVTSRTDAESRRLIRRAS 73 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 R ++RI VV GC AQ EE L P VN+++G + LL+ G+ Sbjct: 74 RQNPSARI--------VVTGCYAQVAFEE-LSDMPGVNLILGNSEKKGIAALLKEIGDGR 124 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 +V+ +D S E + + + AFL +Q GCD FC++C+VPY RG S L Sbjct: 125 QVLVSDISREKDAGGAQLESFAEHTR----AFLQVQNGCDAFCSYCIVPYARGRSRSVPL 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV-RLRYT 266 + + R G E+ L G ++ + GLD + +E + LV R+R Sbjct: 181 DEALAGIRTFAAQGFKEVVLTGIHLGGY---GLDLTPPLTLLDILIAAEKQQLVERIRVG 237 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P ++SD LI ++ P+LH+P+QSG+D++L MNR++ A +R++++++ Sbjct: 238 SVEPTEVSDALIAFLAGSKLVCPHLHIPLQSGNDQVLSRMNRKYAANLFREVVEKLVCAL 297 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDI I +D I GFPGE+ ++F ++ + A F +SPR GTP + M + V +V Sbjct: 298 PDICIGTDIITGFPGESAEEFEQGYRFLESLPVAYFHVFPFSPRTGTPAATMGDHVRSSV 357 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 ER L+K E++ ++ +G+ + VLI+ +E G L G S V + + Sbjct: 358 IKERAKALRKLSEEKKKAYYRTFLGKELPVLIQNR-EENGMLKGLSRNYMPVFVKGDDSL 416 Query: 447 IGDIIKVRITDVKISTLYGELVV 469 I + +VRIT V + GE+V Sbjct: 417 INNEQRVRITGVVREEVKGEVVA 439 >gi|167766692|ref|ZP_02438745.1| hypothetical protein CLOSS21_01198 [Clostridium sp. SS2/1] gi|317497520|ref|ZP_07955839.1| MiaB-like tRNA modifying enzyme YliG [Lachnospiraceae bacterium 5_1_63FAA] gi|167711629|gb|EDS22208.1| hypothetical protein CLOSS21_01198 [Clostridium sp. SS2/1] gi|291558365|emb|CBL37165.1| SSU ribosomal protein S12P methylthiotransferase [butyrate-producing bacterium SSC/2] gi|316895203|gb|EFV17366.1| MiaB-like tRNA modifying enzyme YliG [Lachnospiraceae bacterium 5_1_63FAA] Length = 448 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 142/456 (31%), Positives = 232/456 (50%), Gaps = 39/456 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + GY + AD+IV+NTC A E+ + + + Sbjct: 7 SLGCDKNLVDSEVMLGLLTKHGYTLTDDETQADVIVINTCCFIHDAKEESINTILEMAQY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K +K +VVAGC+A+ +EIL+ P ++ V+G +Y + E + A Sbjct: 67 KEQNLK-----ALVVAGCLAERYKDEILKEIPEIDAVLGTTSYDSIVEAVNTA------- 114 Query: 151 DTDYSVEDKFERLSIVD---GGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIE 202 + + + FE +D +R VT A+L I EGCDK C++C++P RG Sbjct: 115 -LEENTGEHFEHYESIDYLPDNSEVERVVTTGNHMAYLKIAEGCDKRCSYCIIPKIRGRF 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + ++++EA++L GV E+ L+ Q + GK L GEK LL+ L +I+G+ Sbjct: 174 RSVPMQELLNEAKRLASEGVKELVLVAQETTLY-GKDLTGEK-QLPLLLHELCKIEGIEW 231 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R +P +++D LIK + + Y+ +P+Q +RIL+ M RR + + +I ++ Sbjct: 232 IRLLYCYPEEITDELIKVIKTEEKVCNYIDMPIQHSENRILQRMGRRTSREDLVAVIKKL 291 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PDI I + I GFPGE+ +D M+ V++ + + F YSP T + +Q+ Sbjct: 292 RKEIPDITIRTTLITGFPGESQEDHEGLMNFVEECQFDRLGVFTYSPEEDTLAATFEDQI 351 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----P 433 DE VK ER L+ LQ Q++S+ VG+ I+V++E + E VGRS P Sbjct: 352 DEEVKEERRDELMSLQ-----QEISYEHTQQLVGKTIKVMVEGYLFEDDIYVGRSYMDAP 406 Query: 434 WLQS-VVLNSKNHNI-GDIIKVRITDVKISTLYGEL 467 + V +NS + GD + V+IT + + GE+ Sbjct: 407 KVDGCVFINSPEELMTGDFVYVKITQGREYDVIGEV 442 >gi|160915875|ref|ZP_02078083.1| hypothetical protein EUBDOL_01897 [Eubacterium dolichum DSM 3991] gi|158432351|gb|EDP10640.1| hypothetical protein EUBDOL_01897 [Eubacterium dolichum DSM 3991] Length = 433 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 142/446 (31%), Positives = 226/446 (50%), Gaps = 34/446 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS +M M S +E V+ A+ I++NTC A E+ + + ++ Sbjct: 7 SLGCSKNLVDSEKMMGMLVSGQHELVSDPAQAEAIIINTCGFINSAKEEAIATIFKMAEY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K + K ++V GC+AQ E + P ++ V+ + Y L E+L K ++ Sbjct: 67 KKDKCKR-----LIVVGCLAQRYKETLEEEIPEIDAVISIREYPHLHEIL------KELL 115 Query: 151 DT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 D D DK ER R TA+L I EGC CT+C +P RG +S + Sbjct: 116 DEHDLVSYDKCERKV-------SSRPWTAYLKIAEGCSNRCTYCAIPLIRGDNVSFPMED 168 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLRYTTS 268 +V EA++L GV E+ L+ Q+ + GLD K + +LL L EI+G +R Sbjct: 169 LVKEAKQLAQRGVKELVLIAQDTTKY---GLDRYGKLSLLELLKQLHEIEGFHWIRILYM 225 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ D LI+ L ++PY +P+Q ++R+LK+MNRR T E ++ ++IR+ + Sbjct: 226 YPDEIEDELIEGMARLPKVLPYFDIPMQHANNRMLKAMNRRGTKEEVLRLCEKIRNTFEN 285 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + + FIVGFP ET D F M+ V+ + + + +F YSP TP +M + V E K Sbjct: 286 PTLRTTFIVGFPSETHDHFNELMEFVNDVHWDRMGAFPYSPEEDTPAFDMEQDVSEEEKQ 345 Query: 389 ERLLCLQKKLREQQVSFND--ACVGQIIEVLIEKHGKEKGKLVGR----SP-WLQSVVLN 441 RL Q LR++++S + +GQ+IEVL+E G GR +P + +V+ Sbjct: 346 RRL--EQLMLRQEEISLQNQQKMIGQVIEVLVEDQEGLSGLYRGRGKSSAPDEVDGIVIF 403 Query: 442 SKNHNI--GDIIKVRITDVKISTLYG 465 + I G +KVR+T+ L G Sbjct: 404 KSDRFIPYGSFVKVRVTEAFPHDLKG 429 >gi|238926969|ref|ZP_04658729.1| 2-methylthioadenine synthetase [Selenomonas flueggei ATCC 43531] gi|238885203|gb|EEQ48841.1| 2-methylthioadenine synthetase [Selenomonas flueggei ATCC 43531] Length = 442 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 143/455 (31%), Positives = 230/455 (50%), Gaps = 37/455 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRIRN 89 S GC N+ D+ M + G + N +AD++++NTC + A E+ + + LG Sbjct: 7 SLGCAKNLVDTEVMLGIMREHGIDITNEPSEADILIVNTCAFIQSAKEESITTVLGMADY 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + R + ++VAGC+ Q G+++L P + ++G + R+ E++E G+R+ Sbjct: 67 KETGRCRS-----LIVAGCLGQRYGQQLLDEIPEADAIIGTGAWSRIMEVIEETLKGRRL 121 Query: 150 V-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + DT Y K RL TA++ I EGCD C FC +P RG S Sbjct: 122 LIAGKDDTIYDA--KTPRLRTTPH-------YTAYVKIAEGCDHRCAFCAIPLIRGGFRS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVRL 263 R + +V E ++L +NGV E+ L+ Q+ + GLD + LL +L++I G+ + Sbjct: 173 RPMEDIVAEGQELAENGVRELVLIAQDSANY---GLDRYHEPMLPMLLRALAKIDGIAWI 229 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R S+P+ +D LI+ ++ Y+ LP+Q D +L+SMNR T + ++I ++R Sbjct: 230 RVLYSYPKYFTDELIEVFATEPKVVKYVDLPLQHAHDAVLRSMNRPDTRADIEKLIGKLR 289 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P +AI S FIVGFPGETD ++ V+K + + F YS TP + M ++V Sbjct: 290 TRIPGVAIRSTFIVGFPGETDAQYQTLRRFVEKQRFDKVGIFTYSEEEDTPAAAMGKKVS 349 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS----PWL 435 E V ER L+ LQ K+ E+ N Q ++VLIE H E+ G VGRS P + Sbjct: 350 EEVMQERYHDLMSLQSKISEE---INIGLERQELDVLIEGHDAEQSGIAVGRSYREAPEV 406 Query: 436 --QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 Q + G+I++VR+ + GE V Sbjct: 407 DGQIYIEGDAESAPGEIVRVRLLQGFTYDIVGERV 441 >gi|297516710|ref|ZP_06935096.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Escherichia coli OP50] Length = 209 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 102/217 (47%), Positives = 145/217 (66%), Gaps = 13/217 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + LK ++ DL++ V GCVA EGE I +R+ V+++ GPQT +RLPE++ Sbjct: 63 LGRWKLLK----EKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSV 118 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G R VVD + +KF+RL R G TAF++I EGC+K+CT+CVVPYTRG Sbjct: 119 R-GDRSPVVDISFPEIEKFDRLP-----EPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGE 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238 E+SR ++ E +L GV E+ LLGQNVNAWRG+ Sbjct: 173 EVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGE 209 >gi|225387767|ref|ZP_03757531.1| hypothetical protein CLOSTASPAR_01537 [Clostridium asparagiforme DSM 15981] gi|225046128|gb|EEG56374.1| hypothetical protein CLOSTASPAR_01537 [Clostridium asparagiforme DSM 15981] Length = 491 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 136/422 (32%), Positives = 221/422 (52%), Gaps = 49/422 (11%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+ ++GYE V AD+ ++NTC + A K L R + + Sbjct: 10 GCKVNAYETEAMQQQLEARGYEIVPFDQKADVYIINTCSVTNIADRKSRQMLHRAKKMNP 69 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---- 148 D +VV AGC Q + L+ V+++VG RL ++L+ G R Sbjct: 70 -------DSVVVAAGCYVQVAAD-ALKEDAAVDIIVGNNQKARLADILDEFFSGGREDVS 121 Query: 149 -VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 VVD ++ +++E L VD +R R AF+ +Q+GC++FC++C++PY RG SR Sbjct: 122 YVVDISHT--NEYEALH-VDRIADRTR---AFIKVQDGCNQFCSYCIIPYARGRVRSRRP 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS------------------- 248 +V++E R L G E+ L G +++++ GLD E + Sbjct: 176 EEVLEEVRTLAAQGYKEMVLTGIHLSSY---GLDFENPESALIAGDYKAEENALYRPWLL 232 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 L+ +S ++G+ R+R + PR ++ + L P+ HL +QSG D LK MNR Sbjct: 233 RLIQEVSGVEGIGRIRLGSLEPRIITREFAAELAKIPKLCPHFHLSLQSGCDATLKRMNR 292 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + EYR+ +R + AI++D IVGFPGET+++F AT ++++ + + FKYS Sbjct: 293 HYNTEEYRERCGILREAFDNPAITTDVIVGFPGETEEEFAATRQYLEQVHFYEMHVFKYS 352 Query: 369 PRLGTPGSNMLEQVDENVKAER---LLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKE 424 R GT + M +QV E VKAER LL L+K++ RE + F VG + E+L+E+ + Sbjct: 353 RREGTRAAVMPDQVPEPVKAERSDKLLELEKRMSREYRQGF----VGTVQEILLEEPAET 408 Query: 425 KG 426 G Sbjct: 409 GG 410 >gi|291295449|ref|YP_003506847.1| MiaB-like tRNA modifying enzyme YliG [Meiothermus ruber DSM 1279] gi|290470408|gb|ADD27827.1| MiaB-like tRNA modifying enzyme YliG [Meiothermus ruber DSM 1279] Length = 458 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 143/457 (31%), Positives = 231/457 (50%), Gaps = 48/457 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ +QGYE + +AD++V+NTC A E+ + +G Sbjct: 9 SLGCPKALVDSEQILSRLRAQGYETSPTYQEADVVVVNTCGFITPAVEESLTAIGEA--- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + E G V+V GC+ A E I + P V V GP R+ ++R VV Sbjct: 66 ----LSENGK--VIVTGCLG-ARPEVIQQAHPQVLEVTGPGEVDRVLAAVQR------VV 112 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + ++ F L + A+L I EGC+ C+FC++P RG++ SR +++ Sbjct: 113 PLE---QNPFTALVPPQVKLTPRH--YAYLKIAEGCNHKCSFCIIPKLRGLQQSRDAAEI 167 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVR 262 + EA +L+ G E+ ++ Q+ +A+ R G+ + DL+ L+ + +R Sbjct: 168 LFEATRLVGTGTKELLVIAQDTSAYGVDIRHRTSDYAGKQVRAHLVDLVNELAGLGAWLR 227 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G L +PYL +P+Q S R+L++M R A + + I Sbjct: 228 LHYVYPYPHVRDLIPLMAEGKL---LPYLDVPLQHASPRVLRAMRRPGGAESHLKTIQEW 284 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R++ PD+AI S FIVGFPGET++DF +D + + + F YS G +++ V Sbjct: 285 RAIAPDLAIRSSFIVGFPGETEEDFELLLDFIAEARLDRVGCFTYSEVEGADANSLPGAV 344 Query: 383 DENVKAE---RLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRS----P 433 + VK E RL+ LQ QQ+S N A +GQ +EV+++ +G+ G +VGRS P Sbjct: 345 PQEVKEERRARLMALQ-----QQISLEKNQARLGQTLEVIVDDYGELPGLVVGRSRYDAP 399 Query: 434 WLQSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468 + +V + IGDII+VRIT + L+GE+V Sbjct: 400 GIDGLVYAETDGTVKIGDIIQVRITQAEAYDLHGEMV 436 >gi|255282411|ref|ZP_05346966.1| MiaB protein [Bryantella formatexigens DSM 14469] gi|255266995|gb|EET60200.1| MiaB protein [Bryantella formatexigens DSM 14469] Length = 454 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 130/426 (30%), Positives = 214/426 (50%), Gaps = 45/426 (10%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+ M ++GYE V AD+ V+NTC + A K L R + + Sbjct: 12 GCKVNAYETEAMQQMLQARGYEIVPFDGPADVYVINTCTVTNIADRKSRQMLHRAKKMNP 71 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGKRV 149 + VV AGC AQA GEE L V++V+G L ++LE + R G R Sbjct: 72 QAV-------VVAAGCYAQAAGEE-LAGDTAVDIVIGNNRKKDLADILEEYEQERTGCRS 123 Query: 150 VDT----------------------------DYSVEDKFERLSIVDGGYNRKRGVTAFLT 181 + D + ++E LSI + + A++ Sbjct: 124 CEQEQADGCGQEQECEQAGCREQERAACHLQDVAHAPEYETLSISRTAEHTR----AYIK 179 Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241 +Q+GC++FC++C++PY RG SR L+ V+ E L +NG E+ L G +++++ + D Sbjct: 180 VQDGCNQFCSYCIIPYARGRIRSRELADVLAEVSTLAENGYQEVVLTGIHLSSYGKEKDD 239 Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301 G L+ ++ E++G+ R+R + PR +++ + +L + P+ HL +QSG D Sbjct: 240 G--IGLLQLIEAVHEVEGIRRIRLGSLEPRIITEEFAERLSELPKICPHFHLSLQSGCDA 297 Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361 LK MNR +T EY + +R D A+++D IVGFPGET+++F T ++K+ + + Sbjct: 298 TLKRMNRHYTTEEYYEKCVLLRRYFDDPALTTDVIVGFPGETEEEFAQTCAFLEKVKFYE 357 Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 FKYS R GT + M QV E +K ER LQ+ + + G+ EVL E+ Sbjct: 358 THIFKYSRRKGTKAAAMENQVPEEIKNERSKVLQELNKRNMAQYEALFHGRRAEVLFEEK 417 Query: 422 GKEKGK 427 + G+ Sbjct: 418 TVKDGR 423 >gi|260436076|ref|ZP_05790046.1| conserved hypothetical protein [Synechococcus sp. WH 8109] gi|260413950|gb|EEX07246.1| conserved hypothetical protein [Synechococcus sp. WH 8109] Length = 458 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 137/453 (30%), Positives = 232/453 (51%), Gaps = 40/453 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91 GC+ N D+ M + GY DA ++V+NTC I++ E V + +G Sbjct: 16 GCEKNRVDTEHMVGLLAEAGYGVSTDERDAAVVVVNTCSFIQDAREESVRTLVG------ 69 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151 + E G L++ AGC+AQ EE+L P +VG Y + ++L+R G+RV Sbjct: 70 ---LAEQGKELII-AGCLAQHFQEELLESIPEAKAIVGTGDYQHIVDVLQRVEAGERV-- 123 Query: 152 TDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 S F + D R+R AFL + EGCD C FC++P RG + SR + Sbjct: 124 NQVSAVPTF----VGDEHLPRQRTTDQAVAFLKVAEGCDYRCAFCIIPKLRGDQRSRPIE 179 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267 +V EA +L + GV E+ L+ Q + G L G K ++LL +L +++ +R+ Y Sbjct: 180 SIVAEAHQLAEQGVQELILISQITTNY-GLDLYG-KPKLAELLRALGDVEIPWIRVHY-- 235 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++ ++ A+ ++ ++PYL LP+Q +L++MNR A +++D+IR P Sbjct: 236 AYPTGLTPDVLAAYREVPNVVPYLDLPLQHSHPEVLRAMNRPWQADVNDRLLDQIRDQLP 295 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D + + IVGFPGET++ F+ M +++ + F +SP GT + + ++VD V Sbjct: 296 DAVLRTTLIVGFPGETEEHFQHLMGFLERQRFDHVGVFTFSPEDGTAAAELPDRVDPEVA 355 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV- 439 R L+ LQ+ + E++ N VG+ ++VLIE+H + G+++GR +P + V Sbjct: 356 QARKDALMALQQPISEER---NSRWVGRTVDVLIEQHNPQTGEMIGRCARFAPEVDGEVR 412 Query: 440 ----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + G ++ V IT I L G +V Sbjct: 413 VQPGADDQQAAPGSLVPVEITGADIYDLSGRIV 445 >gi|255994803|ref|ZP_05427938.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC 49989] gi|255993516|gb|EEU03605.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC 49989] Length = 484 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/402 (30%), Positives = 212/402 (52%), Gaps = 15/402 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + + F S+GYE + D D+ ++N+C + A +KV + ++R Sbjct: 49 TLGCKVNQYETRAVAEKFSSRGYEVTSGTKDVDIAIINSCSVTSMAEKKVRQAIRKMR-- 106 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +E D ++ V GC Q +G L+ S NV++G ++ + E +E+ + V+ Sbjct: 107 -----RENPDSVIAVMGCYPQRDGGAALK-SLGCNVIIGNESKLGIVEKVEKFLKEQSVI 160 Query: 151 D--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 TD + FE + RKR A++ IQ+GCD++CT+C++ + RG S+ + Sbjct: 161 IDVTDINRCKTFENIQATCDIDGRKR---AYIKIQDGCDRYCTYCIIAHVRGQVRSKKVD 217 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 + +EA+KL+++G EI L G N + G + D++ +S I G R+R + Sbjct: 218 DIYEEAKKLVEDGYREIVLTGINTALYGEDLHQGIGKSMVDVINKISTIPGDFRIRIGSL 277 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ I +L L + HL VQSGS+ +L +M R +T EY I+D +R + Sbjct: 278 EPTVVNKEYINLIKNLPKLCRHAHLSVQSGSNDVLAAMGRNYTREEYIDIVDMLRDAHGN 337 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 IS+D IVGFPGE++ DF ++ LV+KI + + F+YS R GTP + + E +K Sbjct: 338 YGISTDIIVGFPGESEKDFEQSLMLVEKIPFTKVHIFRYSERAGTPAAGFKNMIKEEIKT 397 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 R+ L ++ F++ +G V+ E KE+G G Sbjct: 398 RRMKELSTIAKDSMRRFHELNMGDRRGVIFEM--KEEGAYTG 437 >gi|297624233|ref|YP_003705667.1| MiaB-like tRNA modifying enzyme YliG [Truepera radiovictrix DSM 17093] gi|297165413|gb|ADI15124.1| MiaB-like tRNA modifying enzyme YliG [Truepera radiovictrix DSM 17093] Length = 450 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 137/455 (30%), Positives = 231/455 (50%), Gaps = 43/455 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY V S D+A+++V+NTC A E+ + +G Sbjct: 9 SLGCPKALVDSERILTQLRAEGYRVVPSYDEAEVVVVNTCGFITPAVEESLNAIGEALAH 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 V+V GC+ + E+I+ R P V V G + + R V+ Sbjct: 69 TGK---------VIVTGCLGE-RPEKIMARHPSVLAVTGQADVAGVMAAVHR------VL 112 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D ++ F L G R + +L I EGC+ C FC++P RG+++SR +V Sbjct: 113 PPD---DNPFTSLVPPQGVKLTPRHYS-YLKIAEGCNHKCAFCIIPQLRGLQVSRDAGEV 168 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGEKCT--FSDLLYSLSEIKGLVR 262 + EA +L+ +G E+ ++ Q+ +A+ R G + L+ LS++ VR Sbjct: 169 LYEAYRLVASGTKELLVIAQDSSAYGVDLRHRESAFQGRQVAAHLVPLVRELSDMGAWVR 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G L +PYL +P+Q S ++L++M R A + + I Sbjct: 229 LHYVYPYPHVRELIPLMAEGKL---LPYLDVPLQHASPKVLRAMRRPGGAESHLKTIRAW 285 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+V P++AI S FIVGFPGET++DF +D + + + +F YS G + +QV Sbjct: 286 RAVCPELAIRSTFIVGFPGETEEDFEQLLDFLQEARLERVGAFTYSEVPGAVANGFPDQV 345 Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435 E VK E RL+ +Q+++ ++ N A VG+++EV+++ +G+ G++VGR+ P + Sbjct: 346 PEAVKQERFDRLMAVQQRISLEK---NQAKVGRVLEVIVDDYGELPGEVVGRTKADAPGI 402 Query: 436 QSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468 VL + + IGDI++V++T L GE+V Sbjct: 403 DGTVLATGDGTTKIGDIVRVKVTGATAYDLSGEVV 437 >gi|148240542|ref|YP_001225929.1| 2-methylthioadenine synthetase [Synechococcus sp. WH 7803] gi|238066625|sp|A5GNW7|RIMO_SYNPW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|147849081|emb|CAK24632.1| 2-methylthioadenine synthetase [Synechococcus sp. WH 7803] Length = 468 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 141/454 (31%), Positives = 231/454 (50%), Gaps = 42/454 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91 GC+ N D+ M + GY + A+++V+NTC I+E E V + +G Sbjct: 26 GCEKNRVDTEHMLGLLSEAGYGVSSDESVANVVVVNTCSFIQEAREESVRTLVG------ 79 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-- 149 + E G L++ AGC+AQ EE+L P +VG Y + E+LER G+RV Sbjct: 80 ---LAEQGKELII-AGCLAQHFQEELLESLPEAKAIVGTGDYQHIVEVLERVEAGERVNR 135 Query: 150 -VDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 T V D ERL +R G A+L + EGCD C FC++P+ RG + SR + Sbjct: 136 VSSTPTFVAD--ERLP-----RHRTTGEAVAYLKVAEGCDYRCAFCIIPHLRGNQRSRPI 188 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYT 266 +V EA +L GV E+ L+ Q + G L G + +DLL +L +++ +R+ Y Sbjct: 189 ESIVAEAHQLAAEGVKELILISQITTNY-GLDLYG-RPRLADLLQALGDVEIPWIRVHY- 245 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P +++ +I A+ D+ ++PYL LP+Q +L++MNR A +++D+IRS Sbjct: 246 -AYPTGLTNEVISAYRDVPNVLPYLDLPLQHSHPDVLRAMNRPWQADVNERLLDQIRSQL 304 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P+ + + IVGFPGET + F +++ + F +SP GT + + VD ++ Sbjct: 305 PEAVLRTTLIVGFPGETQEQFEHLAGFLERQQFDHVGVFTFSPEQGTAAAELPNPVDADI 364 Query: 387 ---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439 + +RL+ LQ+ + + N VG+ ++ LIE+H E G ++GR +P + V Sbjct: 365 ALARKDRLMTLQQPI---SAAANARWVGRTVDALIEQHNPETGAMIGRCARFAPEVDGEV 421 Query: 440 -----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + G +I V+IT I L E+V Sbjct: 422 HIAPRADGLQAAPGTMIPVQITGSDIYDLRAEIV 455 >gi|157364894|ref|YP_001471661.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga lettingae TMO] gi|238066616|sp|A8F8W3|RIMO_THELT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|157315498|gb|ABV34597.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga lettingae TMO] Length = 430 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 139/448 (31%), Positives = 226/448 (50%), Gaps = 30/448 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 +K GC N D +E + +G+E V+ +++A+ ++++TC E A ++ + Sbjct: 5 IKVLGCPKNEADCDVLEAILKDRGHEIVSDIEEAEAVIIDTCGFIESAKKESIDEIITFA 64 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 N K R + V GC+ Q +E+ + P V+ +G + +++ E +E+A Sbjct: 65 NYKKYR-----PFFLCVKGCLVQRYSKELSKEIPEVDSWLGVLSPHQIAEAIEKA----- 114 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 T Y VE + + + A++ I +GCD+ CTFC +P +G SRS+ Sbjct: 115 ---TPYLVE---KPTVVYEEAPRSCNNSFAYVKIADGCDRSCTFCSIPLFKGRFKSRSIE 168 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 + E +L++ GV EI L+ Q+ A+ G+D K LL L+ I+G R+R Sbjct: 169 SIYSEVERLVEIGVKEIILVAQDTTAY---GVDLYNKAVLDQLLKKLNSIEGNFRIRVMY 225 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 HP ++D +I A LD L+PY +PVQ GSDRILK M R + + ++I IRS P Sbjct: 226 LHPDHLTDKMIDAICSLDKLLPYFDIPVQHGSDRILKQMGRIKNSEQLLELIAYIRSHNP 285 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D AI + +VGFPGET+DDF+ +D ++K + + F YS GT S+M +V E + Sbjct: 286 DAAIRTSVMVGFPGETNDDFQKLLDFLEKAKFDRLGCFIYSDEEGTVSSSMKRKVSERIA 345 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK----EKGKLVGRSPWLQSVVL 440 ER LL Q ++ +++ VG+ + VLIE+ + + L + V Sbjct: 346 RERYENLLIFQSQIAYERLK---RFVGKNLNVLIEQENELFYVARSHLDAPEVDGEVTVK 402 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ +I VRITD L GEL+ Sbjct: 403 KTREVDIPGYYTVRITDSDEYDLKGELI 430 >gi|228967379|ref|ZP_04128413.1| hypothetical protein bthur0004_41810 [Bacillus thuringiensis serovar sotto str. T04001] gi|228792305|gb|EEM39873.1| hypothetical protein bthur0004_41810 [Bacillus thuringiensis serovar sotto str. T04001] Length = 386 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 121/368 (32%), Positives = 208/368 (56%), Gaps = 14/368 (3%) Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154 +++ D ++ V GC AQ EI+ P V++VVG Q ++ +E R ++ ++ Sbjct: 1 MRQNPDAVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPINVVR 59 Query: 155 SVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 ++ +E L D Y R A L IQEGC+ FCTFC++P+ RG+ SR +V+ Sbjct: 60 NIMKTRVYEEL---DVPYFTDR-TRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIK 115 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLRYTTSHPR 271 +A++L+D G EI L G + + G D + + LL + +E+ GL RLR ++ Sbjct: 116 QAQQLVDAGYKEIVLTGIHTGGY---GEDIKDYNLAGLLRDMEAEVGGLKRLRISSIEAS 172 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 +SD +I+ +V++ +LH+P+QSGS+ +LK M R++T +++ +DR++ P +AI Sbjct: 173 QISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 232 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391 +SD IVGFPGET+++F T + + + +++ F YS R GTP + M +QV E+VK +R+ Sbjct: 233 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 292 Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 L + + + A G+++E++ E K G +G VG + +V IG Sbjct: 293 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIG 352 Query: 449 DIIKVRIT 456 ++KV+IT Sbjct: 353 KLVKVKIT 360 >gi|220928129|ref|YP_002505038.1| MiaB-like tRNA modifying enzyme YliG [Clostridium cellulolyticum H10] gi|219998457|gb|ACL75058.1| MiaB-like tRNA modifying enzyme YliG [Clostridium cellulolyticum H10] Length = 446 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 138/462 (29%), Positives = 235/462 (50%), Gaps = 37/462 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ + S GC N+ DS M M YE VNS +DAD++++NTC E A ++ + Sbjct: 1 MKKKIGIVSLGCPKNLVDSEIMLGMLSHSDYEIVNSKEDADVLIVNTCGFIESAQQESIN 60 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + + K + +++V GC+A+ E+IL + P V+ V+G Y + E++ Sbjct: 61 TILEMAEEKGRNCE-----VLIVTGCMAERYKEKILEQIPEVDAVLGTGNYKEIAEVINL 115 Query: 143 ARFGKRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 A G++ V +TDY E++ LS + K V +L I EGCD CT+C++P Sbjct: 116 AYMGEKTVAYGKLDETDYLDEERV--LS------SSKHSV--YLKISEGCDNRCTYCIIP 165 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 + RG SR + +V EA L G EI ++ Q+ + G L G+K +L+ +S+ Sbjct: 166 FLRGKYRSRKMESLVREAELLAGKGTKEIVIVAQDSTRY-GIDLYGKK-MLPELIRKISD 223 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I G+ +R +P ++ D LI + YL +P+Q SDR+LK M RR T E + Sbjct: 224 ISGIEWVRLLYCYPEEIDDELINEIAINPKVCKYLDIPIQHASDRVLKQMGRRGTISEIK 283 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 Q+++++R I I + IVGFPGET++DF M V + + F YS GT + Sbjct: 284 QVLNKLREKVSGITIRTSLIVGFPGETEEDFEELMAFVKEFRLDRVGVFTYSKEEGTAAA 343 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQV----SFNDACVGQIIEVLIEKHGKEK----GKL 428 M Q+ +++K +R QKK+ E Q N + G++ + +++ + G+ Sbjct: 344 KMKNQIPKHIKIKR----QKKILELQNVISREINQSRNGKVYKTIVDGIADDGIFYYGRT 399 Query: 429 VGRSPWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGELV 468 +P + ++ + + +IG I VRI + + L GE++ Sbjct: 400 YAEAPEIDGIIYFTSPEELSIGSFINVRILNTEDYDLIGEVI 441 >gi|12654747|gb|AAH01215.1| CDK5RAP1 protein [Homo sapiens] gi|325463933|gb|ADZ15737.1| CDK5 regulatory subunit associated protein 1 [synthetic construct] Length = 510 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 136/467 (29%), Positives = 229/467 (49%), Gaps = 74/467 (15%) Query: 17 IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 ++D+ + QR ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREK Sbjct: 91 MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A + +++ L +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 LP+LL A G++ + S+++ + + V + +AF++I GCD C++C+V Sbjct: 211 LPQLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 P+TRG E SR ++ + L Sbjct: 268 PFTRGRERSRPIASI-------------------------------------------LE 284 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 E+K L S+ +++ + D + +HLP QSGS R+L++M R ++ Y Sbjct: 285 EVKKL-------------SEQVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAY 331 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 +++ IR P +++SSDFI GF GET++D T+ L+ ++ Y F F YS R T Sbjct: 332 VELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRA 391 Query: 376 SNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSP 433 + L + V E VK RL L RE+ N VG VL+E K L GR+ Sbjct: 392 YHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRND 451 Query: 434 W-LQSVVLNSKNHNI-----------GDIIKVRITDVKISTLYGELV 468 L+ + +++ ++ GD + V+IT TL G ++ Sbjct: 452 GNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 498 >gi|210633072|ref|ZP_03297639.1| hypothetical protein COLSTE_01547 [Collinsella stercoris DSM 13279] gi|210159226|gb|EEA90197.1| hypothetical protein COLSTE_01547 [Collinsella stercoris DSM 13279] Length = 445 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 142/467 (30%), Positives = 226/467 (48%), Gaps = 62/467 (13%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89 + GC N D+ RM + GY V D AD +++NTC A +E + + L Sbjct: 10 TLGCAKNEVDTDRMRSLLNGAGYNEVFEADQADAVIINTCSFLASATSESIETTLALAEE 69 Query: 90 LKNSRIKEG-GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 + EG D +V+ GCV G ++ P+ LPE+ R + Sbjct: 70 -----VAEGVRDTRIVMCGCVPSRYGADL------------PE---ELPEVAAFVRADE- 108 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGV--------------TAFLTIQEGCDKFCTFCV 194 ED +S++DG +R V A++ I +GCD+FC+FC Sbjct: 109 --------EDGI--VSVMDGVLGVERDVLPHVPRIKRTVESAVAYVKISDGCDRFCSFCA 158 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---KGLDGEKCTFSDLL 251 +PY RG SRS ++ E R+L+ GV EI L+GQ+ W +G++G + L+ Sbjct: 159 IPYIRGRYHSRSAEDIIAEVRELVAGGVREIVLIGQDTGIWGTDFTEGVEG-PANLAQLM 217 Query: 252 YSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 ++SE V +R P M+D LI A D ++PY+ +PVQ + RILK+M+R Sbjct: 218 VAVSEAVRPANVWIRVLYLQPEGMTDELIAAIRDTPEVLPYIDIPVQHCNARILKAMHRS 277 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + E ++ ++R+ P + I + +VGFP ETDD+ + + +D+ G+ F YSP Sbjct: 278 GSEEELTRLFAKLRAEIPGMVIRTTSLVGFPSETDDEAKQMLAFMDREGFDYTSVFPYSP 337 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGK 427 GT + M QVDE+VK ER + A VG++ EV+++ + E + Sbjct: 338 EEGTRAAAMDGQVDEDVKLERTQAAMDLAESLGFAATAAHVGEVAEVIVDGVEETDEGLE 397 Query: 428 LVGRSPWLQ------SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 L+G + W Q +V L++ + +GDI++VR TD L GE+V Sbjct: 398 LIGHA-WFQAPDSDGAVHLDATDAAVGDILQVRFTDSFCYELIGEVV 443 >gi|147677631|ref|YP_001211846.1| 2-methylthioadenine synthetase [Pelotomaculum thermopropionicum SI] gi|238066433|sp|A5D2R3|RIMO_PELTS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|146273728|dbj|BAF59477.1| 2-methylthioadenine synthetase [Pelotomaculum thermopropionicum SI] Length = 444 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 146/452 (32%), Positives = 228/452 (50%), Gaps = 29/452 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRN 89 S GC N+ DS M + GYE +AD++++NTC I + E + + + RN Sbjct: 9 SLGCPKNLVDSEIMLGILKKAGYEITAREKEADVLIVNTCSFINDAKEESIRTIIELARN 68 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 N R + ++VAGC+AQ E++ P ++ +VG + + R G +V Sbjct: 69 KINGRCRA-----ILVAGCLAQRYPAELMAEMPEIDGLVGTGQVPEIARAVRRVLEGGKV 123 Query: 150 VDTDYS--VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + T + D + + Y TA+L I EGCD C++CV+P RG SR + Sbjct: 124 LLTGSPGYLHDAYFPKVLATPPY------TAYLKIAEGCDNRCSYCVIPAVRGPFRSRRM 177 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++ EA +L + GV E+ ++ Q+ + G L G K LL L+ IKG V LR Sbjct: 178 EDIMSEAEELANKGVKELIIVAQDTTRY-GIDLYG-KPMLDALLEGLTGIKGPVWLRLLY 235 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++D LI + YL +P Q S+R+L+ MNRR + E +++ ++R+ P Sbjct: 236 TYPSLITDDLIYLMAKSRKICRYLDIPFQHASNRVLQLMNRRGSKEEAARLVAKLRADIP 295 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 I + + FIVGFPGET++DF+ +D + + + +A F YS GT + M QV E VK Sbjct: 296 GIVLRTTFIVGFPGETEEDFQELLDFMAEAKFDRAGVFTYSREEGTAAAEMPGQVPEEVK 355 Query: 388 A---ERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRS----PWLQSVV 439 ER + LQ+++ Q+ N VG++IEVL+E K K +G GRS P + V Sbjct: 356 LLRRERAMMLQQEISLQK---NLKRVGEVIEVLVEGKSLKGRGMYTGRSEGDAPGIDGKV 412 Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 N+ GD +V I L GE V+ Sbjct: 413 FFKSGFNLQPGDFARVLIKGGTEYDLTGETVL 444 >gi|160892570|ref|ZP_02073360.1| hypothetical protein CLOL250_00099 [Clostridium sp. L2-50] gi|156865611|gb|EDO59042.1| hypothetical protein CLOL250_00099 [Clostridium sp. L2-50] Length = 438 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 140/455 (30%), Positives = 226/455 (49%), Gaps = 31/455 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + + S GC N+ DS M + G+E N +A+ +V+NTC + A E+ + + Sbjct: 2 KVLMVSLGCDKNLVDSEVMLGLLHKAGHEITNDEHEAEAVVINTCAFIKDAQEESINTII 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 LK K G ++V GC++Q ++IL P ++ +VG Y + + + Sbjct: 62 EYGELK----KTGSLKKLIVTGCLSQRYKDDILAELPEIDTIVGAANYDAIVDAIGSEEE 117 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V D +Y E V G A+L I EGC K CT+C +PY RG S Sbjct: 118 HSFVTDINYMPE-------AVGGRIVTTGASMAYLKIAEGCGKMCTYCAIPYIRGKYRSI 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + Q++ A++L GV E+ L+ Q + G L GEK T LL+ L +I+ + +R Sbjct: 171 PMEQLLASAKELAAQGVKELILVAQETTLY-GVDLYGEK-TLPKLLHELCKIEEIQWIRL 228 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P +++D LI + + + YL +P+Q D +L+ M RR + ++I ++R Sbjct: 229 MYCYPEEITDELIDTIAEEEKVCHYLDIPIQHSEDPVLRRMGRRTCKKDIVELIAKLRIR 288 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDIAI + I GFPGET+ D A M+ V++ + + F YSP GTP ++ Q+ EN Sbjct: 289 IPDIAIRTTLIAGFPGETEADHEALMEFVNESEFDRLGVFTYSPEEGTPAASFPNQI-EN 347 Query: 386 VKAER----LLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435 AE+ ++ LQ Q+VS+ N +G+ + VLIE + E VGR+ P + Sbjct: 348 EVAEKWRDDIMALQ-----QEVSYDKNQELLGKSLTVLIEGYVAEDDVYVGRTYRDAPDV 402 Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +V + + G ++VRITD L GE++ Sbjct: 403 DGMVFVDAPYELMSGTFVQVRITDANEYDLTGEMI 437 >gi|116071448|ref|ZP_01468716.1| hypothetical protein BL107_04849 [Synechococcus sp. BL107] gi|116065071|gb|EAU70829.1| hypothetical protein BL107_04849 [Synechococcus sp. BL107] Length = 458 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 136/453 (30%), Positives = 231/453 (50%), Gaps = 40/453 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91 GC+ N D+ M + GY +DA ++V+NTC I++ E V + +G Sbjct: 16 GCEKNRVDTEHMVGLLAEAGYGVSTDEEDASVVVVNTCSFIQDAREESVRTLVG------ 69 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151 + E G L++ AGC+AQ EE+L P +VG Y + ++L+R G+RV Sbjct: 70 ---LAEQGKELII-AGCLAQHFQEELLESIPEAKAIVGTGDYQHIVDVLQRVESGERV-- 123 Query: 152 TDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 S F + D R+R A+L + EGCD C FC++P RG + SR + Sbjct: 124 NRVSAVPSF----VGDEHLPRQRTTDQAVAYLKVAEGCDYRCAFCIIPKLRGDQRSRPIE 179 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267 +V EA +L + GV E+ L+ Q + G L G K ++LL +L E++ +R+ Y Sbjct: 180 SIVAEAHQLAEQGVQELILISQITTNY-GLDLYG-KPKLAELLRALGEVEIPWIRVHY-- 235 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++ ++ A+ D+ ++PYL LP+Q +L++MNR A +++D+IR P Sbjct: 236 AYPTGLTPAVVAAYRDVPNVVPYLDLPLQHSHPDVLRAMNRPWQADVNERLLDQIREQLP 295 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D + + IVGFPGET++ F+ ++ + F +SP GT +++ +VD +V Sbjct: 296 DAVLRTTLIVGFPGETEEHFQHLATFLETQRFDHVGIFTFSPEDGTAAADLPNRVDPDVA 355 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440 R L+ LQ+ + ++ N VG+ ++VLIE+H + G+++GR +P + V Sbjct: 356 QARKDALMALQQPIAAER---NQRWVGKTVDVLIEQHNPQTGEMIGRCSRFAPEVDGEVH 412 Query: 441 -----NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + G + V+IT I L G +V Sbjct: 413 VQPGDDGQQAAPGSFVPVKITGADIYDLTGHIV 445 >gi|225375407|ref|ZP_03752628.1| hypothetical protein ROSEINA2194_01032 [Roseburia inulinivorans DSM 16841] gi|225212743|gb|EEG95097.1| hypothetical protein ROSEINA2194_01032 [Roseburia inulinivorans DSM 16841] Length = 438 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 136/441 (30%), Positives = 230/441 (52%), Gaps = 39/441 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+ + + GYE V + AD+ V+NTC + A K L + + + Sbjct: 13 GCKVNAYETEAMQQILENAGYEIVPFTEYADVYVVNTCSVTNMADRKSRQMLHKAKKM-- 70 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--FGK--R 148 D +VV AGC Q + E L V++V+G + L +LE GK Sbjct: 71 -----NPDAIVVGAGCYVQTKEAEALL-DDTVDIVIGNNKKHELLAMLEAYENDHGKCGN 124 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V+D ++ ++ E + R AF+ +Q+GC++FC++C++P+ RG SR+ Sbjct: 125 VIDINHEKQEYEEMFLERTAEHTR-----AFIKVQDGCNQFCSYCIIPFARGRVRSRNSE 179 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRY 265 V+ E ++L ++G EI L G +++++ G+D T +LL+ + E+ G+ R+R Sbjct: 180 DVIREVKRLAEHGFREIVLTGIHLSSY---GVD----TGDNLLHLIREVHNVDGIERIRL 232 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 + PR ++D A L + P+ HL +QSG D L+ MNRR+ EY + +R Sbjct: 233 GSLEPRIVTDGFAAALAGLPKICPHFHLSLQSGCDATLQRMNRRYDTREYEEGCQILRKY 292 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 AI++D IVGFPGET+++F T + + +I + + F+YS R GT + M QV E Sbjct: 293 FDHPAITTDVIVGFPGETEEEFAVTKEYLKRIHFYEMHIFQYSKREGTKAAVMEHQVPEP 352 Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVL 440 VK ER LL L+KK+ E+ F + VG+ + L+E+ + +G+ G + + + Sbjct: 353 VKKERSNILLALEKKMSEE---FREYYVGKQVTALMEEAYEFEGETYFTGYTKEYVKIAV 409 Query: 441 NS----KNHNIGDIIKVRITD 457 S N + I+ R+TD Sbjct: 410 KSAADLSNQFVKGTIRGRLTD 430 >gi|319951674|ref|YP_004162941.1| miab-like tRNA modifying enzyme [Cellulophaga algicola DSM 14237] gi|319420334|gb|ADV47443.1| MiaB-like tRNA modifying enzyme [Cellulophaga algicola DSM 14237] Length = 442 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 132/427 (30%), Positives = 217/427 (50%), Gaps = 39/427 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F +G++RV+ + AD+ V+NTC + E A ++ S + + + Sbjct: 9 TLGCKLNFSETSTIARNFQEEGFDRVDFSEHADMYVINTCSVTENADKRFKSIVKQAQ-- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---LERARFGK 147 K D V GC AQ + E+ L V++V+G +++ + L + FG+ Sbjct: 67 -----KVNPDAFVAAIGCYAQLKPED-LASVHGVDLVLGATEKFKITDYINDLSKNDFGE 120 Query: 148 ----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +V+ D+ V G Y AFL +Q+GCD CT+C +P RGI Sbjct: 121 VHSCEIVEADFYV-----------GSYAIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 169 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260 S +L V+ A+++ + EI L G N+ + GKG G K TF DL+ +L I+G+ Sbjct: 170 SDTLQNVIKNAKEIASQDIKEIVLTGVNIGDY-GKGEFGNKKHEHTFYDLVEALDAIEGI 228 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ P + + I D + +P+ H+P+QSGSD ILK M RR+ + Y + Sbjct: 229 HRLRISSIEPNLLKNKTIDFVADSNSFVPHFHIPLQSGSDEILKLMRRRYLSGLYVDRVT 288 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RI+ V P I D IVGFPGETD+ F T ++ + + F YS R T + M Sbjct: 289 RIKEVMPHACIGVDVIVGFPGETDELFLETYHFLNDLDISYLHVFTYSERDNTVAAEMDN 348 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RS 432 V +NV+++R L+ +++ +F ++ +G + VL E KE G + G ++ Sbjct: 349 VVSKNVRSKRSKMLRGLSAKKRRAFYESQIGSVRTVLFEGENKE-GYIHGFTENYVKVKA 407 Query: 433 PWLQSVV 439 PW +V Sbjct: 408 PWNPELV 414 >gi|289578123|ref|YP_003476750.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter italicus Ab9] gi|289527836|gb|ADD02188.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter italicus Ab9] Length = 449 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 130/439 (29%), Positives = 238/439 (54%), Gaps = 19/439 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M ++F GYE V+ + AD+ V+NTC + ++ K + + R Sbjct: 23 GCKVNQYETEVMAELFKKAGYEVVDFDEKADVYVINTCTVTNRSDMKSRQEIRKAR---- 78 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFGKRVV 150 K+ + +VV GC Q +++ P V++ +G + ++ EL+E + K V Sbjct: 79 ---KKNPNAVVVAVGCYVQVSPKDVFS-LPEVDIAIGTKNKDKIVELVEEFTQKNQKLSV 134 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + + ++E + Y + A++ IQ+GC+++CT+C++PY RG SR ++ Sbjct: 135 VNNIMTQKEYEEFEVT--AYTER--TRAYVKIQDGCNQYCTYCIIPYARGPVRSREPEKI 190 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 ++E R+ D+G EI L G ++ ++ G D + D++ + EI G+ R+R ++ P Sbjct: 191 LEEVRRFADSGYKEIVLTGIHIASY---GKDLKNIGLLDIIKRIHEIDGIKRIRLSSIEP 247 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 +++ +K L + + H+ +QSG D LK M RR+T EY+ +IDR+R D+A Sbjct: 248 VFLTEEFVKEIAKLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDRLRKYIKDVA 307 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I++D +VGFPGET+++F T V++I +++ FKYS R GT + QV ++K +R Sbjct: 308 ITTDVMVGFPGETEEEFFETYKFVEEICFSKMHVFKYSRRKGTRAYSFPNQVANHIKEDR 367 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNI-G 448 L + + + F ++ +G+ +EVL E+ K KG + G + SV + + Sbjct: 368 SKKLIELSKRCEYKFMESFIGKTLEVLFEQPVKNMKGYVEGLTDNYLSVAVKGDIKLLRN 427 Query: 449 DIIKVRITDVKISTLYGEL 467 +I V+I + K + L GE+ Sbjct: 428 EIYPVKIKERKDNFLIGEI 446 >gi|254471140|ref|ZP_05084543.1| MiaB-like tRNA modifying enzyme [Pseudovibrio sp. JE062] gi|211960282|gb|EEA95479.1| MiaB-like tRNA modifying enzyme [Pseudovibrio sp. JE062] Length = 422 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 142/441 (32%), Positives = 222/441 (50%), Gaps = 52/441 (11%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M+ + G + D +++NTC + +A + + + R Sbjct: 5 VVTFGCRLNAYESEVMKSEAEAAGLK--------DAVLINTCAVTNEAVRQARQTIRKTR 56 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK- 147 +E + ++V GC AQ E E V++V+G E LERA +G+ Sbjct: 57 -------RENPNARIIVTGCAAQTEAETFAEMGE-VDLVLGNS------EKLERASYGRV 102 Query: 148 -----------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 RV D SV + L +DG R R AF+ +Q GCD CTFC++P Sbjct: 103 AQFGIEETEKVRVNDI-MSVRETAGHL--IDGLEGRSR---AFVQVQNGCDHRCTFCIIP 156 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 Y RG S + V+D+ ++L+DNG EI L G ++ ++ G L GE + L Sbjct: 157 YGRGNSRSVPMGVVIDQIKRLVDNGYGEIVLTGVDITSY-GADLPGEPKLGTLCAKILKL 215 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I L RLR ++ + D L++ LM +LHL +Q+G + ILK M RRH+ + Sbjct: 216 IPDLKRLRLSSIDSIEADDELMEVIAHDHRLMSHLHLSLQAGDNMILKRMKRRHSREDTI 275 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 + + +R +RPD+ +D I GFP ETD+ F T+ +VD+ G F +SPR GTP + Sbjct: 276 RFCEDVRKMRPDVVFGADIIAGFPTETDEMFENTLRIVDECGLTHLHVFPFSPRPGTPAA 335 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 M Q+D + ER L+ K +E ++ A VG+ E+LIE+ G +GR+ Sbjct: 336 RM-PQLDRKIIKERAARLRIKGQEALLAHLRAEVGKKREILIEREG------LGRTEQFT 388 Query: 437 SVVLNSKNHNI-GDIIKVRIT 456 V L++ NI G ++ RIT Sbjct: 389 QVELDA---NIAGSLVSARIT 406 >gi|56751603|ref|YP_172304.1| hypothetical protein syc1594_d [Synechococcus elongatus PCC 6301] gi|56686562|dbj|BAD79784.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 429 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 135/419 (32%), Positives = 219/419 (52%), Gaps = 35/419 (8%) Query: 62 ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121 AD++V+NTC + A E+ +R L + E G +V+AGC+AQ +++L Sbjct: 19 ADVVVVNTCSFIQAAREE------SVRTL--VELAESGKK-IVIAGCLAQHFQDQLLAEL 69 Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---A 178 P +VG Y+R+ ++L+R G+RV S E F I D R R T A Sbjct: 70 PEAIALVGTGDYHRIVDVLQRTESGERV--NAISQEPSF----IADENLPRYRTTTSAVA 123 Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238 +L + EGCD C FC++P+ RG SRS+ +V EA++L GV E+ L+ Q + Sbjct: 124 YLRVAEGCDYRCAFCIIPHLRGKRRSRSIESIVAEAKQLAAEGVQELVLISQITTNY--- 180 Query: 239 GLDGE-KCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 GLD K ++LL L ++ +R+ Y ++P ++ +I A + ++PYL LP+Q Sbjct: 181 GLDRYGKPMLAELLRQLGQVDVPWIRIHY--AYPTGLTPEVIAAIRETHNVLPYLDLPLQ 238 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 ILK+MNR +II++++ PD + + FI GFPGET++ FR + + Sbjct: 239 HSHPEILKAMNRPWQGNVNDRIIEKLKEALPDAVLRTTFIAGFPGETEEHFRHLQQFIQR 298 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQI 413 + F +SP GT ++ V ++VK R L+ Q+ + E++ N A +G++ Sbjct: 299 HEFDHVGVFAFSPEEGTAAIDLPNPVPDDVKEARRDALMATQQPIAERR---NRAQIGRL 355 Query: 414 IEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++VLIE+ G +GRS P + VV + +G ++ VRITD I L+GE+ Sbjct: 356 VDVLIEQEHPSTGLKIGRSARFAPEVDGVVYVQGDAALGQLVTVRITDADIYDLHGEVA 414 >gi|78043523|ref|YP_360009.1| putative tRNA modifying protein [Carboxydothermus hydrogenoformans Z-2901] gi|123770593|sp|Q3ACX5|RIMO_CARHZ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|77995638|gb|ABB14537.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Carboxydothermus hydrogenoformans Z-2901] Length = 438 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 134/449 (29%), Positives = 226/449 (50%), Gaps = 20/449 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++F+ S GC N DS + + S+GY R + +++DL+++NTC A E+ + Sbjct: 2 KYFILSLGCTKNQADSEVIMGILESKGYVRSLNPEESDLLIVNTCGFIAAAIEESIEEIL 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +LK K ++VAGC+ Q EG+E+ + P V++ P+ L +LL Sbjct: 62 NLVHLKKPGQK------ILVAGCLVQREGKELAKHLPEVDLFFTPREINNLDKLLADLGE 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++V ++ L++ + V ++ I +GCD CT+C +P RG SR Sbjct: 116 NNKLVLSEPGF------LNLEKKPRAKSNEVYRYIKIADGCDNRCTYCTIPAIRGKYTSR 169 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L +++E + + G+ EI L+ Q+ A+ G L GE +LL + IKG +R Sbjct: 170 PLDDILEEIKDTLKQGIKEIILVAQDTTAY-GIDLYGE-FKLVELLRKIGSIKGNFWVRL 227 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P ++ LI + ++ Y+ +P+Q ILK M R+ ++ E ++R+R Sbjct: 228 MYLYPDKITPELINEIKENPKVIKYVDVPLQHIHPEILKKMGRKGSSEEIISTLERLRKE 287 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDI I + FIVGFPGET++ F +D V K + + +F Y GTP + M Q+ + Sbjct: 288 IPDITIRTTFIVGFPGETEEQFNYLLDFVKKFKFNRLGAFPYYREKGTPAAKMKGQIPKK 347 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV--V 439 VK +R L + +E ++ N A VG+ I V++EK + + +GR+ P + + + Sbjct: 348 VKEQRYEKLMEVQQEISLNLNKALVGKKIPVIVEKKIRGENLYLGRTYMDAPEIDGIIEI 407 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 K G II V ITD I L GE + Sbjct: 408 KAEKRLKKGQIINVLITDYDIYDLKGEFI 436 >gi|150016098|ref|YP_001308352.1| MiaB-like tRNA modifying enzyme YliG [Clostridium beijerinckii NCIMB 8052] gi|238065361|sp|A6LSR6|RIMO_CLOB8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|149902563|gb|ABR33396.1| MiaB-like tRNA modifying enzyme YliG [Clostridium beijerinckii NCIMB 8052] Length = 465 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 141/452 (31%), Positives = 242/452 (53%), Gaps = 34/452 (7%) Query: 31 SYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 S GC N DS + + M S YE N+ +AD+I++NTC E A ++ + + N Sbjct: 29 SLGCDKNRVDSEIILGKM--SDEYEITNNPKNADIIIVNTCGFIESAKQESIDTILEMAN 86 Query: 90 LK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 K N + K L++ GC+ Q GEE+ P +++++G Y ++ E++ G + Sbjct: 87 YKINYKCK-----LLIATGCLTQRYGEELKTLIPEIDIMLGVNDYNKINEIITEFIDGNK 141 Query: 149 VVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + +YS E+ E I+ + +A++ I EGC+ FCT+C++P RG SR Sbjct: 142 LATELLNYSDENINEGKRII-----TTQRESAYIRIAEGCNNFCTYCIIPKIRGKFRSRK 196 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + +++EAR L ++GV EI L+ Q+ + G + G+K LL LS+I+G+ +R Sbjct: 197 MENIINEARDLSESGVKEIILIAQDTTLY-GSDIYGKK-NLHVLLKELSKIEGIEWIRVL 254 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P ++ D LI + ++ YL +P+Q SD+ILK M R+ + + II++I+ +R Sbjct: 255 YCYPEEIYDELINEIACNEKVVKYLDIPIQHISDKILKLMGRKTSK---KDIINKIQILR 311 Query: 327 ---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P+I I + FIVGFP ETD+DF +D + + + +F YS TP + M Q+D Sbjct: 312 ERVPEIVIRTTFIVGFPNETDEDFNEIIDFLKEYKLEKVGAFTYSQEEDTPAAKMDGQID 371 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSV 438 E +K +R L+ LQK + E+ N +G++ ++L+E + + G+ +P + + Sbjct: 372 EEIKEKREEDLMLLQKNISEE---INKLKIGKLYDILVEGYNGKCYYGRSYEMAPDIDAN 428 Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 VL N I G+ +KV+I + L G +V Sbjct: 429 VLFESNAKIENGEFVKVKIVETMDYDLVGVVV 460 >gi|258511959|ref|YP_003185393.1| MiaB-like tRNA modifying enzyme [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478685|gb|ACV59004.1| MiaB-like tRNA modifying enzyme [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 471 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 148/454 (32%), Positives = 225/454 (49%), Gaps = 45/454 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N YD+ + F +GY +V AD+ V+NTC + K R + Sbjct: 8 TLGCKVNFYDTEGIWQTFKRRGYTQVPFDSVADVYVVNTCTVTHTGDRKS-------RQM 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-- 148 ++ D +VVV GC AQ +EI R V++VVG ++ + +E A +R Sbjct: 61 IRRAVRTNPDAVVVVTGCYAQIAPDEIARIQG-VDLVVGNDQKSKIVDHVE-AVLAERKP 118 Query: 149 -VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + + +F+ L D Y +R A L IQ+GC+ FCTFC++P RG+ SR Sbjct: 119 YLAVGNIMQATEFDEL---DVPYFEERS-RANLKIQDGCNNFCTFCIIPRARGLIRSRKP 174 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 VV +A KL G EI L G + G G D E +DLL L I R+R ++ Sbjct: 175 ENVVLQATKLARAGYREIVLTGIHTG---GYGEDFENYRLADLLLDLERIDLPFRIRISS 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++ D L+ ++P+LH+P+Q+GSD +L+ M+R +T EY + + +R P Sbjct: 232 IEASEIDDRLMDVLAASKKVVPHLHIPLQAGSDPVLRRMHRHYTTAEYAEKLRELRRRLP 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D+A+++D IVGFPGETD+ F T V GYAQ F YSPR GT +QV E+VK Sbjct: 292 DLAVTTDVIVGFPGETDEQFGETYAFVRAQGYAQLHVFPYSPRRGTAAYKFKDQVPEDVK 351 Query: 388 ---AERLLCLQKKLREQQVSFNDACVGQIIEVLIE--------------KHGKEKGK-LV 429 R++ L LR+ ++ + VG+ +EV+ E H E + LV Sbjct: 352 RARVARMIALGDDLRQ---AYAASFVGRELEVIAESPLASADDEARRAYSHLPEASRMLV 408 Query: 430 GRSPWLQSVVLNSKN-----HNIGDIIKVRITDV 458 G V + + IG++I+VR+T V Sbjct: 409 GYDGHYLRVAFEAPSDVPLESMIGEVIRVRMTGV 442 >gi|229829112|ref|ZP_04455181.1| hypothetical protein GCWU000342_01197 [Shuttleworthia satelles DSM 14600] gi|229792275|gb|EEP28389.1| hypothetical protein GCWU000342_01197 [Shuttleworthia satelles DSM 14600] Length = 449 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 229/448 (51%), Gaps = 26/448 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M G+ +S ++AD+I++NTC E A E+ + L Sbjct: 9 SLGCDKNLVDSEHMLSRLHRDGFSMTDSEEEADIIIVNTCAFIESAKEESIETI-----L 63 Query: 91 KNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG--- 146 + + KE G L ++A GC++Q +I + P V+ V+G +Y + +L G Sbjct: 64 QMAAYKEKGRLKALLATGCLSQRYARQIREQIPEVDGVLGTNSYDDIVPVLHAVLDGLPQ 123 Query: 147 -KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + D +++ RL G Y A+L I EGCDK C++C++P RG S Sbjct: 124 TRIDDLDDLPDDEEAGRLLTTAGHY-------AYLKIAEGCDKHCSYCIIPKLRGSYRSV 176 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +++ EAR+L+ GV E+ L+ Q + G L G K +LL L++I+GL +R Sbjct: 177 PMIKLIKEARELVSQGVRELILVAQETTLY-GSDLYGRK-MLPELLDKLNDIEGLRWIRI 234 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P ++ LI+A D ++ Y+ +P+Q G D IL+ M RR + R+ + +R Sbjct: 235 LYAYPEEIDQELIQAMVRNDKVLHYIDMPIQHGDDEILRRMGRRTNQDDIRKKVAMLREA 294 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDIAI + I GFPGETD + +D +D++ + + +F YS TP ++ Q+D+ Sbjct: 295 MPDIAIRTTVICGFPGETDQMHQNLLDFIDEMQFDRLGAFAYSQEEDTPAASFAGQLDQK 354 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441 VK RL + +K ++ + N++ VG +E +IE ++ VGR+ P + + Sbjct: 355 VKEARLARVMEKQQKINFAMNESLVGSDLEAIIEGKIADEPAYVGRTYRDAPDVDGYIFV 414 Query: 442 SKNHNI---GDIIKVRITDVKISTLYGE 466 S +++ GD++ ++ L GE Sbjct: 415 SGENDVFHTGDLVMTHVSGAYEYDLIGE 442 >gi|257784586|ref|YP_003179803.1| MiaB-like tRNA modifying enzyme YliG [Atopobium parvulum DSM 20469] gi|257473093|gb|ACV51212.1| MiaB-like tRNA modifying enzyme YliG [Atopobium parvulum DSM 20469] Length = 468 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 131/454 (28%), Positives = 220/454 (48%), Gaps = 33/454 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N D+ RM + + G+ V + AD+ ++NTC A E+ I Sbjct: 20 TLGCAKNEVDTDRMRALLLASGFGEVADPESADVAIINTCSFLASATEESIETTLEIAEG 79 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + +++ L +++ GCV G E+ + P V V P E +V Sbjct: 80 ASEGVRK---LPIIMCGCVPSRYGAELNEQLPEVAAFV--------PADQEDGIV--SIV 126 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 ++ + + + G G +AF+ I EGCD+FC FC +PY RG SR ++ Sbjct: 127 ADVLNIPEPTQSIVAAHGMLRTIDGASAFVKISEGCDRFCAFCAIPYIRGHYHSRPAEEI 186 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGL----DGEKCTFSDLLYSLSEI----KGLVR 262 + E ++L+D GV E+ L+GQ+ W G + DG+ T + L+ ++E+ KG +R Sbjct: 187 LQEVKELMDGGVREVILIGQDTGIW-GSDMPDTEDGQTPTLAKLMQKVAEVVRSYKGWIR 245 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 + Y P M+D LI D ++PY+ +P+Q ++RILK M R + E R++ DR+ Sbjct: 246 VLYL--QPEGMTDELISTIRDTPEVLPYIDIPIQHCNERILKRMGRSGSIQELRKLFDRL 303 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RS P + + + + GFPGETD++ D + + + F YSP GT G+ M +QV Sbjct: 304 RSEIPGMVLRTTGMCGFPGETDEESDELYDFIQEQEFDYTSVFTYSPEEGTLGAKMSDQV 363 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVVL 440 + VK ER L + + + VG+ EV+I+ + E +L+G + W Q+ Sbjct: 364 PDEVKIERTQRLLDLVEQLGFAATARHVGERCEVIIDGIEESDEGTELIGHT-WFQAPDC 422 Query: 441 NSKNH------NIGDIIKVRITDVKISTLYGELV 468 + H ++GDI+ + D + GE+V Sbjct: 423 DGAVHIAEGEASVGDIVLCDLVDSFCYEMIGEIV 456 >gi|33866726|ref|NP_898285.1| Fe-S oxidoreductase [Synechococcus sp. WH 8102] gi|81573837|sp|Q7U477|RIMO_SYNPX RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|33639327|emb|CAE08709.1| possible Fe-S oxidoreductase [Synechococcus sp. WH 8102] Length = 464 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 135/453 (29%), Positives = 234/453 (51%), Gaps = 40/453 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91 GC+ N D+ M + GY + +DA ++V+NTC I++ E V + +G Sbjct: 22 GCEKNRVDTEHMVGLLAQAGYGVSTNENDAAVVVVNTCSFIQDAREESVRTLVG------ 75 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151 + E G L++ AGC+AQ +E+L P +VG Y + E+L+R G+RV Sbjct: 76 ---LAEQGKELII-AGCLAQHFQDELLESIPEAKAIVGTGDYQHIVEVLQRVEAGERV-- 129 Query: 152 TDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 S F + D R+R AFL + EGCD C FC++P RG + SR + Sbjct: 130 NRVSAVPTF----VGDEHLPRQRTTDQAVAFLKVAEGCDYRCAFCIIPKLRGDQRSRPIE 185 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267 +V EA +L++ GV E+ L+ Q + G L G K ++LL +L E++ +R+ Y Sbjct: 186 SIVAEAHQLVEQGVQELILISQITTNY-GLDLYG-KPKLAELLRALGEVEIPWIRVHY-- 241 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++ ++ A+ ++ ++PYL LP+Q +L++MNR A +++D+IR P Sbjct: 242 AYPTGLTPEVLAAYREVPNVVPYLDLPLQHSHPEVLRAMNRPWQADVNDRLLDQIRDQLP 301 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D + + IVGFPGET++ F+ M+ + + + F +SP GT + + VD +V Sbjct: 302 DAVLRTTLIVGFPGETEEHFQHLMEFLRRQRFDHVGVFTFSPEDGTAAAELPNPVDPDVA 361 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440 R L+ LQ+ + ++ N + V + ++VLIE+H + G+++GR +P + V Sbjct: 362 QARKDALMALQQPISAER---NHSWVSRTVDVLIEQHNPQTGQMIGRCARFAPEVDGEVH 418 Query: 441 -----NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + G ++ V+IT + L G +V Sbjct: 419 VQPGEDGQKAAPGTMVPVQITGADVYDLSGRIV 451 >gi|56205139|emb|CAI19392.1| CDK5 regulatory subunit associated protein 1 [Homo sapiens] gi|119596728|gb|EAW76322.1| CDK5 regulatory subunit associated protein 1, isoform CRA_e [Homo sapiens] Length = 510 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 136/467 (29%), Positives = 228/467 (48%), Gaps = 74/467 (15%) Query: 17 IVDQCIVPQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 ++D+ + QR ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREK Sbjct: 91 MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A + +++ L +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 LP LL A G++ + S+++ + + V + +AF++I GCD C++C+V Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIV 267 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 P+TRG E SR ++ + L Sbjct: 268 PFTRGRERSRPIASI-------------------------------------------LE 284 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 E+K L S+ +++ + D + +HLP QSGS R+L++M R ++ Y Sbjct: 285 EVKKL-------------SEQVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAY 331 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 +++ IR P +++SSDFI GF GET++D T+ L+ ++ Y F F YS R T Sbjct: 332 VELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRA 391 Query: 376 SNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSP 433 + L + V E VK RL L RE+ N VG VL+E K L GR+ Sbjct: 392 YHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRND 451 Query: 434 W-LQSVVLNSKNHNI-----------GDIIKVRITDVKISTLYGELV 468 L+ + +++ ++ GD + V+IT TL G ++ Sbjct: 452 GNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 498 >gi|167748881|ref|ZP_02421008.1| hypothetical protein ANACAC_03655 [Anaerostipes caccae DSM 14662] gi|317470277|ref|ZP_07929671.1| MiaB tRNA modifying enzyme YliG [Anaerostipes sp. 3_2_56FAA] gi|167651851|gb|EDR95980.1| hypothetical protein ANACAC_03655 [Anaerostipes caccae DSM 14662] gi|316902250|gb|EFV24170.1| MiaB tRNA modifying enzyme YliG [Anaerostipes sp. 3_2_56FAA] Length = 445 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 137/449 (30%), Positives = 227/449 (50%), Gaps = 28/449 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + +G+ N ++AD+IV+NTC A E+ + + + Sbjct: 7 SLGCDKNLVDSEVMLGLLTERGHTLTNDEEEADVIVINTCCFIHDAKEESINTILEMAAY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---K 147 K +K +VVAGC+++ +EIL P ++ V+G +Y + E ++ A G + Sbjct: 67 KEQNLK-----ALVVAGCLSERYKDEILEEIPEIDAVLGTTSYDSIVEAVDEALAGNGYE 121 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 DY ++ R + G + A+L I EGCDK C++C++P RG S + Sbjct: 122 HYESIDYLPDNSGHRRLVTTGSH------MAYLKIAEGCDKRCSYCIIPKIRGRFRSVPM 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +++ AR+L +GV E+ L+ Q + GK L G+K LL L ++G+ +R Sbjct: 176 KELLKSARELAASGVTELVLVAQETTLY-GKDLTGKK-ELPTLLKELCGVEGIEWIRLLY 233 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P +++D LI+ + + ++ Y+ +P+Q SD ILK M RR + ++ II ++R P Sbjct: 234 CYPEEITDELIRTIKEEEKVVNYIDMPIQHCSDGILKRMGRRTSKHDIETIIAKLRKEIP 293 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D+AI + I GFPGET++ + V + + + F YSP T + Q++E+VK Sbjct: 294 DMAIRTTLITGFPGETEEQHEELKEFVRQQRFERLGVFTYSPEEDTKAAEFEGQIEEDVK 353 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440 R L+ LQ+K+ + VG+ I VLIE + E VGRS P + V Sbjct: 354 EARRDELMALQQKISYEHTH---EMVGKTIRVLIEGYLFEDDVYVGRSYMDAPKVDGCVF 410 Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGEL 467 + + GD + V+IT L GE+ Sbjct: 411 VTSPEELLTGDYVYVKITKGNEYDLIGEM 439 >gi|331091338|ref|ZP_08340178.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium 2_1_46FAA] gi|330404499|gb|EGG84043.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium 2_1_46FAA] Length = 449 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 133/435 (30%), Positives = 240/435 (55%), Gaps = 30/435 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+++ +GYE V + AD+ ++NTC + A K L R + + Sbjct: 29 GCKVNAYETEAMQELLEKEGYEIVPFKEGADIYIINTCTVTNMADRKSRQMLHRAKKM-- 86 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-----FGK 147 + +VV AGC QA+ E +++++G L +L+ + K Sbjct: 87 -----NPNAIVVAAGCYVQAKSES-KETDESIDIIIGNNKKQDLISILKEYQEKHDGIQK 140 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 ++D +++ E +E L + + + A+L +Q+GC++FCT+C++PY RG SR Sbjct: 141 EIIDINHTKE--YEELHLSKTAEHTR----AYLKVQDGCNQFCTYCIIPYARGRVRSREK 194 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 VV E ++L+ NG E+ L G +++++ G L GE L+ +++EI+GL R+R + Sbjct: 195 ENVVAEVKQLVANGYQEVVLTGIHLSSY-GVDLQGE--DLLSLILAVNEIEGLKRIRLGS 251 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 PR +++ K L+ + P+ HL +QSG + LK MNRR+TA EY + + +R Sbjct: 252 LEPRIITEEFAKTISGLEKICPHFHLSLQSGCNGTLKRMNRRYTAEEYFEKCELLRKYFD 311 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + A+++D IVGFPGET+++F + V+K+ + + FKYS R GT + M QV E +K Sbjct: 312 NPALTTDVIVGFPGETEEEFEESRAFVEKVNFYETHIFKYSRREGTKAAVMENQVPEQIK 371 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVLNS 442 +R LL L ++ R++ + + +G+ +EVL+E+ +++GK G + V L S Sbjct: 372 TKRSNILLELDERKRKE---YEEKFIGKTVEVLMEEEVEKEGKRYQTGHTKEYIKVALES 428 Query: 443 KNHNIGDIIKVRITD 457 + ++K++I + Sbjct: 429 DENMQNQLVKIKIDN 443 >gi|323140804|ref|ZP_08075720.1| ribosomal protein S12 methylthiotransferase RimO [Phascolarctobacterium sp. YIT 12067] gi|322414720|gb|EFY05523.1| ribosomal protein S12 methylthiotransferase RimO [Phascolarctobacterium sp. YIT 12067] Length = 441 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 141/452 (31%), Positives = 230/452 (50%), Gaps = 31/452 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + + E N DA+LI++NTC E A E+ S + ++ Sbjct: 7 SLGCPKNLVDSEVMLGIIKDKQLEITNDPADAELIIVNTCGFIESAKEESISTILQMAQY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K +EG +++ GC+ Q +E+ P V+ +VG ++ + ++++ GKRV Sbjct: 67 K----EEGSCKYLIMTGCLGQRYADELFESMPEVDAIVGTDSFTDIGWVIDQVLAGKRVK 122 Query: 151 D----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +V+ L+ D A+L I EGCD C++C++P RG SR Sbjct: 123 HLQKLESKNVQTPPRMLTTPD--------YMAYLKIAEGCDNCCSYCIIPQLRGPYTSRP 174 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +V+ EAR L +GV E+ ++ Q+ + G+ L G K LL L+E++G+ +R Sbjct: 175 YDEVMAEARSLAAHGVKELIVVAQDTTRY-GEDLIG-KLLLPQLLRDLNELEGIEWIRVM 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + +D LI A + D + Y+ +P+Q SDR+L+SMNR T + +++ ++R Sbjct: 233 YLYPNNFTDDLIAAFAECDKVCKYIDIPLQHASDRLLESMNRYDTRAQVEELLAKLRERI 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P I I + FIVGFPGETD+DF MD V+K + A F+YS GT M Q++ V Sbjct: 293 PGITIRTTFIVGFPGETDEDFAELMDFVEKQRFENAGVFQYSQEEGTVAGAMENQIEPEV 352 Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRS----PWLQSV 438 K R L+ LQ + E+ + + ++V++E +E L VGRS P + Sbjct: 353 KENRYHELMALQAGISEE---IHQEREDEELDVIVEGFDEENPALAVGRSYHEAPDIDGN 409 Query: 439 VL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 + N+ +G +++VRI + ELV Sbjct: 410 IFIENAAELEVGQMVRVRILQGFTYEMVAELV 441 >gi|331002891|ref|ZP_08326404.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae oral taxon 107 str. F0167] gi|330413184|gb|EGG92558.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae oral taxon 107 str. F0167] Length = 457 Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 141/456 (30%), Positives = 234/456 (51%), Gaps = 49/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+ + + GY+ V + AD+ ++NTC + A K L R R + Sbjct: 8 TLGCKVNTYETEAMQQLMENAGYKCVEFGERADVYIINTCSVTNIADRKSRQMLHRARKM 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL----PELLERARFG 146 D +VV AGC ++ +I I +++VG + E L+ Sbjct: 68 NE-------DAIVVAAGCYVESAKNKIDEDLSI-DIIVGNNNKNEIVNIINEFLQNKSEN 119 Query: 147 KRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 K ++D + E ++F I D AF+ +Q+GC++FC++C++P+TRG SR Sbjct: 120 KFIIDINKETEYEEFHIRKINDH-------TRAFIKVQDGCNQFCSYCIIPFTRGRVRSR 172 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-----------RGKGL------DGEKCTFS 248 + +++E R L +G EI L G +++++ R + L D E T + Sbjct: 173 KMENIMEEVRNLAASGYKEIVLTGIHLSSYGLDFLDESYNKRMEKLTNTCESDEEFVTKN 232 Query: 249 DLL---YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 DLL +++ I G+ R+R + PR + + IK+ ++ P+ HL +QSG D+ LKS Sbjct: 233 DLLCLIENIAGIDGVERVRIGSLEPRIIKENFIKSLSKIEKFCPHFHLSLQSGCDKTLKS 292 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 MNR++TA E+ + + IR A+++D IVGFPGET DF + V+K+ + + F Sbjct: 293 MNRKYTADEFFEGVKLIRKYFDSPAVTTDIIVGFPGETKKDFEESKKFVEKVKFYETHIF 352 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE----KH 421 YS R GT +NM QVD N K +R L + Q F + +G+ E+L E K Sbjct: 353 PYSIREGTKAANM-PQVDGNEKVKRANILNEININNQKEFKSSRIGKEDELLCEEIFIKD 411 Query: 422 GKEKGKLVGRSP-WLQSVVLNSKNHNIGDIIKVRIT 456 G E G + +++ VLNS +++ DII+ RIT Sbjct: 412 GVE--YFTGYTKEYIKVAVLNS-DYSTNDIIRGRIT 444 >gi|257468233|ref|ZP_05632329.1| 2-methylthioadenine synthetase [Fusobacterium ulcerans ATCC 49185] gi|317062515|ref|ZP_07927000.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC 49185] gi|313688191|gb|EFS25026.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC 49185] Length = 445 Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 140/444 (31%), Positives = 230/444 (51%), Gaps = 31/444 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +F + S GC N+ DS + ++ G+E + + +AD+I++NTC A ++ + Sbjct: 2 KFALISLGCSKNLVDSENFIGILVNKRGFEVTSELGEADIIIVNTCGFIGDAKKESIETI 61 Query: 85 GRIRNLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + +LK N +K+ ++V GC+AQ EIL+ P V+ V+G ++ +++E Sbjct: 62 LEVSDLKINGNLKK-----IIVTGCLAQRYAGEILKELPEVDAVIGTGEIDKIEKVVEEI 116 Query: 144 RFGKRVVDT---DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 KRVV++ D+ + +R+ TA+L I EGCD+ CT+C++P RG Sbjct: 117 LADKRVVESTKMDFLANSETDRVLTTASH-------TAYLKIAEGCDRRCTYCIIPQLRG 169 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR++ ++ EA KL+ +GV E+ LL Q + G L EK + + L+ L +I GL Sbjct: 170 KLRSRTIEDILKEANKLVASGVKELNLLAQETTEY-GIDLYKEK-SLARLMKELVKIDGL 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 LR P ++D LI + D + Y +PVQ SD IL+ M R + + I++ Sbjct: 228 KWLRTYYMFPDSLTDELIDVMKNEDKICKYFDIPVQHISDNILQQMGRAKSGDHIKGILN 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR PD I + IVGFPGET+++F +++ + FKYS T +M Sbjct: 288 RIRKEIPDAVIRTAVIVGFPGETEENFEELKAFIEEYKFDYVGVFKYSREEDTKAYDMEN 347 Query: 381 QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRS 432 QV E +K +R + LQ K+ E S N +GQI+EV+I+ E +G+ G++ Sbjct: 348 QVPEEIKEKRWVEITNLQSKIAE---SKNRNMLGQIVEVMIDGVSTESEYLLEGRTKGQA 404 Query: 433 PWLQSVVL-NSKNHNIGDIIKVRI 455 + VL N G+I+KV++ Sbjct: 405 LEIDGKVLTNDGTAKPGEIVKVKL 428 >gi|254432004|ref|ZP_05045707.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Cyanobium sp. PCC 7001] gi|197626457|gb|EDY39016.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Cyanobium sp. PCC 7001] Length = 467 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 235/462 (50%), Gaps = 39/462 (8%) Query: 24 PQRFFVKSY-GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ S+ GC+ N D+ M + GY +A+++V+NTC + A E+ Sbjct: 10 PRKTIAFSHLGCEKNRVDTEHMLGLLAEAGYGVSADEGEANVVVVNTCSFIQDAREE--- 66 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +R L + E G L++ AGC+AQ EE+L P +VG Y + +LER Sbjct: 67 ---SVRTLVE--LAEQGKELII-AGCLAQHFQEELLESLPEAKAIVGTGDYQHIVSVLER 120 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTR 199 G+RV S F + D R R + A+L + EGCD C FC++P R Sbjct: 121 VEAGERV--NQVSATPTF----VGDEHLPRYRTTSEAVAYLKVAEGCDYRCAFCIIPRLR 174 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK- 258 G + SR + +V EAR+L GV E+ L+ Q + G L G K ++LL +L+E++ Sbjct: 175 GDQRSRPIESIVAEARQLAAQGVKELVLISQITTNY-GLDLYG-KPRLAELLRALAEVEI 232 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 +R+ Y ++P ++ ++ A+ ++ ++PYL LP+Q +L++MNR A + Sbjct: 233 PWIRVHY--AYPTGLTPEVLAAYREVPNVVPYLDLPLQHSHPDVLRAMNRPWQANVTGGL 290 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + RIR PD + + FIVGFPGET++ F+ +D V + + F +SP GTP + + Sbjct: 291 LHRIREQLPDAVLRTTFIVGFPGETEEHFQHLLDFVAEQRFDHVGVFTFSPEDGTPAAEL 350 Query: 379 LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR-SPW 434 + V + A +RL+ +Q+ + + N A VG+I++VLIE+ G+++GR S + Sbjct: 351 PDAVAPELAAARKDRLMTVQQPI---AAARNQAWVGRIVDVLIEQENPATGEMLGRCSRF 407 Query: 435 LQSVVLNSKNHN--------IGDIIKVRITDVKISTLYGELV 468 V + H G ++ VR+T L GE+V Sbjct: 408 APEVDGEVRVHPGPGGLCAAPGTMVPVRLTAADTYDLIGEVV 449 >gi|218248984|ref|YP_002374355.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 8801] gi|238065331|sp|B7JV66|RIMO_CYAP8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|218169462|gb|ACK68199.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 8801] Length = 449 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 139/447 (31%), Positives = 224/447 (50%), Gaps = 29/447 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRI 87 + GC+ N DS M + GY+ + + AD +++NTC I+E E V + + Sbjct: 9 ISHLGCEKNRIDSEHMLGLLAEAGYQIDGNEELADYVIVNTCSFIQEARQESVRTLV--- 65 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L + K ++++GC+AQ EE+L P +VG Y + ++++R G+ Sbjct: 66 -ELAEANKK------IIISGCMAQHFQEELLEELPEAVAIVGTGDYQTIVDVVQRVENGE 118 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEIS 204 RV S F I D R R T A+L + EGCD C FC++P+ RG + S Sbjct: 119 RV--KAISTTPTF----IADESIPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263 RS+ +V EA++L D GV E+ L+ Q + G L GE ++LL L ++ VR+ Sbjct: 173 RSIESIVTEAQQLADQGVQELILISQITTNY-GLDLYGEP-KLAELLRELGKVDIPWVRI 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P ++ +I A + ++PYL LP+Q +ILK+MNR II+RI+ Sbjct: 231 HY--AYPTGLTSPIIAAIRETPNVLPYLDLPLQHSHPQILKTMNRPWQGQVNDSIIERIK 288 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P+ + + FIVGFPGET++ F ++ V + + F +S TP M QV Sbjct: 289 EAIPEAVLRTTFIVGFPGETEEHFDHLVNFVQRHEFDHVGVFTFSAEEETPAYQMSPQVP 348 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439 ++ ER L + + + N C+GQ + VLIE+ + G+L+GRS P + +V Sbjct: 349 PDIAQERRNLLMEVQQPISIKKNQNCIGQTVPVLIEQENPQTGQLIGRSPRFAPEVDGLV 408 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGE 466 + I+ V+IT + LYG+ Sbjct: 409 YVQGEAPLNTIVPVQITHADVYDLYGK 435 >gi|320159796|ref|YP_004173020.1| hypothetical protein ANT_03860 [Anaerolinea thermophila UNI-1] gi|319993649|dbj|BAJ62420.1| hypothetical protein ANT_03860 [Anaerolinea thermophila UNI-1] Length = 444 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 129/453 (28%), Positives = 232/453 (51%), Gaps = 22/453 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +RF++ S GC N DS M + G+E + +AD++++NTC A ++ L Sbjct: 3 KRFYLVSLGCAKNTVDSQSMASLLQEAGFEPTDRQKEADVLIVNTCGFIGPARQES---L 59 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +R+L + K L+V AGC+ + +++ + P ++ ++G + + + +L+++ R Sbjct: 60 DTLRDLARHKKKHQ---LLVAAGCLTERYRQQVAQEVPGIDGILGTRRWMDIVDLVQQLR 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ + Y + + + + G R +G +A+L I +GC + C FC +P +G Sbjct: 117 PGRKYPEPLYHLPET-PTVGKDEKGVLRAAIQGASAYLKIADGCRRPCAFCAIPLIKGTA 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL---DGEKCTFSDLLYSLSEIKG 259 +SR ++ EAR L D GV E+ L+ Q+ + G L DG +L EI Sbjct: 176 VSRPPEVILQEARILQDEGVKELLLIAQDTTDY-GHDLGMKDGLATLLEGILREAPEIP- 233 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +R+ Y ++P ++D LI+ + ++PYL +P+Q + L+ M R Q + Sbjct: 234 WIRILY--AYPGYVTDRLIEVMANHPQIVPYLDMPLQHAHPQTLRRMRRPSNMEWVYQTL 291 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R+ P++A+ + FIVG+PGET+++F+ +D V +I + F +S GT + Sbjct: 292 AKMRAAIPNLALRTTFIVGYPGETEEEFQTLLDFVQEIQFDHVGIFTFSFEKGTASEPLG 351 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW----L 435 + + VK ERL L + ++ N + VGQI VLIE G ++G +GR+P + Sbjct: 352 DPIPAEVKQERLARLAEVQERVSLARNQSYVGQIQPVLIE--GFDRGIAIGRAPHDAPEI 409 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V +G+I+ VRIT L G LV Sbjct: 410 DGLVFVEGEAPVGEIVPVRITGAMTHDLTGVLV 442 >gi|33860662|ref|NP_892223.1| Fe-S oxidoreductase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|81576526|sp|Q7V3H3|RIMO_PROMP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|33633604|emb|CAE18561.1| possible Fe-S oxidoreductase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 454 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 137/458 (29%), Positives = 238/458 (51%), Gaps = 50/458 (10%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI----REKAAEKVYSFLGRIR 88 GC+ N+ D+ M+ + +GYE N ++DA+++V+NTC RE++ K+ F + + Sbjct: 22 GCEKNLVDTEHMQGLLDKEGYEVGNDIEDANVVVVNTCSFIETAREESIRKIIEFTDQGK 81 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 V+VAGC+AQ EE+L+ P + +VG Y ++ ++++R G+ Sbjct: 82 E-------------VIVAGCMAQHFKEELLKEMPEIKGLVGTGDYQKIAKVIKRVEKGEI 128 Query: 149 VVDT----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V + ++ ++K R VD K A+L I EGCD C FC++P RG + S Sbjct: 129 VNEVSKIPEFIADEKIPRF--VD-----KNKFVAYLRIAEGCDYKCAFCIIPKLRGPQRS 181 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263 R + +V EA+ L G+ EI L+ Q + G+ + G K + + LL LS++ +R+ Sbjct: 182 RDIESIVSEAKNLAAQGIQEIILISQ-ITTNYGQDIYG-KPSLARLLKELSKVSVPWIRI 239 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P ++D +IK+ D + ++PY LP+Q +LKSMNR A I+ +IR Sbjct: 240 HY--AYPTGLTDEVIKSFKDSNNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILSQIR 297 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P + + IVGFPGE F+ +D + + + F +SP GT ++ +V Sbjct: 298 EQIPSAVLRTSLIVGFPGENQKHFQHLLDFLHRHEFDHVGVFIFSPEEGTSAFDLPNRVP 357 Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436 V + + ++ +Q+ + +++ N VG I+VL+EK + K +L+GRS P + Sbjct: 358 SEVADARKDNIISIQQNISKKK---NQLYVGTTIKVLVEKISENK-ELIGRSYNFAPEID 413 Query: 437 -SVVLNSKNHN-----IGDIIKVRITDVKISTLYGELV 468 +V+L+ KN+ IG ++ I LYGE++ Sbjct: 414 GNVILSIKNYEDEKNYIGKFVEANICFADEYDLYGEVI 451 >gi|329847628|ref|ZP_08262656.1| RNA modification enzyme, MiaB family protein [Asticcacaulis biprosthecum C19] gi|328842691|gb|EGF92260.1| RNA modification enzyme, MiaB family protein [Asticcacaulis biprosthecum C19] Length = 416 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 139/440 (31%), Positives = 212/440 (48%), Gaps = 34/440 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88 ++GC++N Y+S + R + DD +D I+ NTC + +A + + R R Sbjct: 7 TFGCRLNSYESEVI----------RKTAADDGLSDAIIFNTCAVTGEAVRQARQAIRRAR 56 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 KE D ++V GC AQ + + S V+ V+G + A + Sbjct: 57 -------KENPDKRLIVTGCAAQTDPDTFANMSE-VDFVIGNADKQKAGAYRLTADSARV 108 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 VV+ +SV + L +DG +R R AF+ +Q GCD CTFC++PY RG S + Sbjct: 109 VVNDVFSVRETAGHL--IDGLKDRAR---AFVEVQNGCDHRCTFCIIPYGRGNSRSAAAG 163 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 VV + ++L+ G EI L G ++ +W G L G+ + + L + L RLR ++ Sbjct: 164 DVVAQTQRLVAEGYNEIVLTGVDLTSW-GNDLPGQPQLGNLVARILKLVPDLKRLRLSSI 222 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++ D L +A + + L PYLHL +Q G D ILK M RRH + +++++RS+RPD Sbjct: 223 DAAEIDDTLFRAFAEEERLAPYLHLSLQHGDDLILKRMKRRHLRADAVALVEKVRSIRPD 282 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 IA +D I GFP ET++ F + LVD G + F YSPR TP + M Q+ V Sbjct: 283 IAFGADMIAGFPTETEEHFDNAVSLVDACGLSYVHVFPYSPRPQTPAAKM-PQLPRPVIK 341 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 ER L+ K E G+ + +IEK G R+ VV + + +G Sbjct: 342 ERAARLRAKAEEALRGHLARHAGRTLSCVIEKPG------FARAADFTEVVF-TGDATVG 394 Query: 449 DIIKVRITDVKISTLYGELV 468 I + IT GELV Sbjct: 395 GISDIAITSHDGKHAVGELV 414 >gi|282890695|ref|ZP_06299215.1| hypothetical protein pah_c026o007 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499288|gb|EFB41587.1| hypothetical protein pah_c026o007 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 430 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 132/454 (29%), Positives = 229/454 (50%), Gaps = 30/454 (6%) Query: 18 VDQCIVPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 +++ +PQ+ F + + GC+ N Y+S +D + GY ++AD+ ++NTC + E A Sbjct: 1 MNESSLPQKTFKIATLGCRTNQYESQAYQDQLIALGYRPAREDEEADVCIVNTCTVTETA 60 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 + +R L KE +VV GC A+ + + +VV+ + Sbjct: 61 DLQSKH---DVRQLS----KENPQAKIVVTGCAAEQNAQIFASIKGVEHVVLNKEK---- 109 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 ++V T + ED E SI N AF+ +Q+GC++FCT+C++P Sbjct: 110 ----------DQLVQTLFPEEDVPE-FSI----KNFDAHTRAFVKVQDGCNEFCTYCIIP 154 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLS 255 Y RG SR++ +++DE + LI NG EI L G N+ + G ++G DL+ ++ Sbjct: 155 YVRGRSRSRTIPEIIDEVKDLISNGFKEIVLTGINIGDFDGNPVEGMPPHRLVDLVRAVD 214 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 ++ GL RLR ++ P ++ D L A + +H+ +QSGS+ +LK MNR++T + Sbjct: 215 QVPGLKRLRISSIDPDEIDDELADAVLNGAKTCHSMHIVLQSGSNVVLKRMNRKYTRQIF 274 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 IDR+R P+ ++D IVGFPGET+ DF TM+++ ++ +A+ F YS R T Sbjct: 275 LNTIDRLRQADPNFTFTTDIIVGFPGETETDFAETMEIMQEVQFAKVHMFPYSERKRTRA 334 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPW 434 + M +V +V +R L + Q + VGQ + VL E H G++ G + Sbjct: 335 ALMPNKVPPDVIKKRKQELLRSAEHQAYLLRERFVGQRMTVLTESGHISRPGEISGHTEN 394 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V + + + ++I+V + + L G+ V Sbjct: 395 FLNVWI-TGDFQSNELIEVDLVENTPQGLIGKFV 427 >gi|326791250|ref|YP_004309071.1| ribosomal protein S12 methylthiotransferase rimO [Clostridium lentocellum DSM 5427] gi|326542014|gb|ADZ83873.1| Ribosomal protein S12 methylthiotransferase rimO [Clostridium lentocellum DSM 5427] Length = 448 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 137/452 (30%), Positives = 225/452 (49%), Gaps = 31/452 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + G+ + AD+IV+NTC E A ++ + + Sbjct: 9 SLGCDKNLVDSEHMLGLLNQGGFSLTGDEEKADVIVVNTCCFIEDAKKESIENILEVAGY 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL----LERARFG 146 K + G ++V GC+AQ +EIL P V+ VVG +Y ++ ++ LE+ Sbjct: 69 KET----GNCKALIVTGCMAQRYKQEILDEIPEVDAVVGTTSYDKIVDIANGILEQKGLR 124 Query: 147 KRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + D D + D+ R+ G + A++ I EGCDK CT+C++P RG SR Sbjct: 125 TQHFDLIDREMLDEMPRILTTAGYF-------AYVKISEGCDKHCTYCIIPKLRGKYRSR 177 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + ++ E KL +GV EI L+ Q+ + G D E + + LL+ L EI+G+ +R Sbjct: 178 QMDKIKAEVEKLAADGVSEIILVAQDTTEY---GRDLENASLAKLLHELGEIEGIEWIRV 234 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P ++D LI+ + YL +P+Q S ILK M R+ + + ++ + ++R Sbjct: 235 LYCYPESITDELIEEIKTNPKVCKYLDIPIQHASTAILKRMARKSSLEQLKERLGKLRQE 294 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P IA+ + IVGFPGET++DF+ D V ++ + + F YS GTP + +Q+DE Sbjct: 295 IPGIALRTTLIVGFPGETEEDFQILYDFVKEMRFDRLGVFTYSKEEGTPAALFEDQIDEK 354 Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438 K +R ++ LQ + + VG+ ++VLIE ++ +GR+ P + Sbjct: 355 TKIKRRDAIMALQHGISS---ALTAEKVGKTMKVLIEGKITDEDVYIGRTYQDAPDIDGE 411 Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 V + GD + VRIT L GE+V Sbjct: 412 VFVEYEGELISGDFVDVRITASNDYDLIGEIV 443 >gi|153812695|ref|ZP_01965363.1| hypothetical protein RUMOBE_03102 [Ruminococcus obeum ATCC 29174] gi|149831211|gb|EDM86300.1| hypothetical protein RUMOBE_03102 [Ruminococcus obeum ATCC 29174] Length = 419 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/420 (30%), Positives = 231/420 (55%), Gaps = 25/420 (5%) Query: 44 MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103 M+ + + GYE V + AD+ V+NTC + A K L + + + D +V Sbjct: 1 MQQLLENAGYETVPFEEGADVYVINTCTVTNIADRKSRQMLHKAKKM-------NPDAIV 53 Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFGKRVVDTDYSVEDKFE 161 V GC AQA+ E+ L+ V++++G ++ E LE K+V + + ++E Sbjct: 54 VATGCYAQADTEK-LKEDTAVDLILGNNQKTQIVEALEEYEKEHAKQVQVIEINHTKEYE 112 Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221 LSI + V A++ +Q+GC++FCT+C++P+ RG SR + V+ E L G Sbjct: 113 ELSIASTAEH----VRAYIKVQDGCNQFCTYCIIPFARGRVRSRKIEDVLREVETLAAKG 168 Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281 E+ L G +++++ E+ + L+ ++S ++G+ R+R + PR +++ ++ Sbjct: 169 YKEVVLTGIHLSSYGVDFPKEERESLLSLIQAVSRVEGISRIRLGSLEPRIITEEFLEGI 228 Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341 + P+ HL +QSG ++ LK+MNRR++A EY + + IR P A+++D IVGFP Sbjct: 229 VKTGKVCPHFHLSLQSGCNKTLKNMNRRYSAQEYAEKCELIRKFYPAPALTTDVIVGFPQ 288 Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQK-K 397 ET++DF + + V KI + + FKYS R GT ++M Q+ E KA+ R+L L + + Sbjct: 289 ETEEDFEESYEFVKKIHFYETHIFKYSRRHGTKAASMDGQLTEAAKAQRSDRMLELHEIR 348 Query: 398 LREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRS-PWLQSVVLNSKNHNIGDIIKVR 454 RE + +A +G+ +E+L+E+ + G+ VG S ++++V+ + H + D++ V+ Sbjct: 349 ARE----YEEAMIGKKMELLLEEEIEIDGRPWYVGHSREYVRAVISKTDVHRVNDLVTVK 404 >gi|327403999|ref|YP_004344837.1| MiaB-like tRNA modifying enzyme [Fluviicola taffensis DSM 16823] gi|327319507|gb|AEA43999.1| MiaB-like tRNA modifying enzyme [Fluviicola taffensis DSM 16823] Length = 448 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 130/441 (29%), Positives = 230/441 (52%), Gaps = 27/441 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + +F + G+ +V+ + D++V+NTC + E A +K + R + Sbjct: 11 TLGCKLNFSETSTISRLFENAGFAKVDFEETPDILVINTCSVTENADKKCKQLVRRAHKI 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ V + GC AQ + EI + P V++V+G + + E LE A + Sbjct: 71 -------NPEVFVAIIGCYAQLKPTEIAQ-IPGVSLVLGANEKFNIVEHLE-ALEHENHT 121 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT------------AFLTIQEGCDKFCTFCVVPYT 198 + ++ + E+ V N K+ + +FL IQ+GCD FCTFC +P Sbjct: 122 ENSSAINGENEKQGAVVKFENIKQTTSFIPSHSMGDRTRSFLKIQDGCDYFCTFCTIPLA 181 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG + S+S V EARK+ + + E+ L G N+ + G+G +GE F +L+ +L E+ Sbjct: 182 RGKSRNASISDTVLEARKIAETNIKEVVLTGVNIGDF-GQG-EGE--NFFELVKALDEVN 237 Query: 259 GLVRLRYTTSHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 G+ R R ++ P +SD +I+ + +P+ H+P+QSGS+R+LK+M R++ Y + Sbjct: 238 GIDRYRISSIEPNLLSDEIIQFTLENSKRFVPHFHIPLQSGSNRLLKAMRRKYLRELYVE 297 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + I+ +RPD AI D IVGFPGETD++F TMD + + + F YS R T + Sbjct: 298 RVQHIKKLRPDCAIGVDVIVGFPGETDEEFIETMDFLKDLDVSYLHVFTYSERANTTAAK 357 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 + + V V+A+R L +++ +F ++ +G VL E +E+G + G + Sbjct: 358 LGDPVPNQVRAQRSKQLHILSDKKKRAFYESQIGSKRTVLFESE-EEEGIMYGFTENYVK 416 Query: 438 VVLNSKNHNIGDIIKVRITDV 458 V + I V++T++ Sbjct: 417 VKTPFNPELVNQIQNVQLTEI 437 >gi|255524216|ref|ZP_05391175.1| MiaB-like tRNA modifying enzyme YliG [Clostridium carboxidivorans P7] gi|296185337|ref|ZP_06853747.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium carboxidivorans P7] gi|255512041|gb|EET88322.1| MiaB-like tRNA modifying enzyme YliG [Clostridium carboxidivorans P7] gi|296050171|gb|EFG89595.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium carboxidivorans P7] Length = 446 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 141/444 (31%), Positives = 231/444 (52%), Gaps = 42/444 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQ---GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 S GC N DS ++ S E VN AD+I++NTC E + ++ + + Sbjct: 10 SLGCDKNRIDS----EIILSNIKANNEIVNDAKKADIIIVNTCGFIETSKQESIDTILEM 65 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 KN L+VV GC+ Q G+E++ P ++V++G Y +L E +++ K Sbjct: 66 AKYKNKY----NCKLLVVTGCLTQRYGKELMELMPEIDVMLGVNDYDKLNESIDKCI--K 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGV------TAFLTIQEGCDKFCTFCVVPYTRGI 201 + YS E K D G N + TA++ I EGC+ FCT+C++P RG Sbjct: 120 NSEEKVYSCEYK-------DAGINEGERILTTPSHTAYIRIAEGCNNFCTYCIIPKIRGK 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 SRS+ ++ EA+ L GV EI L+ Q+ + G + G+K S+L+ LS+I+ + Sbjct: 173 YRSRSMENIIKEAQSLAQQGVKEIILVAQDTTRY-GTDIYGKK-ALSELIRKLSKIENIH 230 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R +P ++++ LI + YL +P+Q S+ ILK+M RR T E I++ Sbjct: 231 WIRILYCYPEEITEELIDEIATNTKVCKYLDIPLQHISNNILKAMGRRGTKEEILNNINK 290 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R +I + + IVGFPGET++DF+ D + + FKYS GTP + M Q Sbjct: 291 LREKVKNIVLRTSIIVGFPGETEEDFQELKDFIKDEKLDKLGVFKYSREDGTPAALMKNQ 350 Query: 382 VDENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434 +DE VK E L+ +Q+++ +Q N +G++ EV++E GKE+ + GR +P Sbjct: 351 IDEKVKESREEELMSIQQEISKQ---INSNKIGRVYEVIVE--GKEEEEWYGRNYEMTPE 405 Query: 435 LQSVVLNSKNHN--IGDIIKVRIT 456 + +V + ++N IG I+ V+IT Sbjct: 406 IDGLVYFNCDNNLEIGSIVNVKIT 429 >gi|269118813|ref|YP_003306990.1| MiaB-like tRNA modifying enzyme [Sebaldella termitidis ATCC 33386] gi|268612691|gb|ACZ07059.1| MiaB-like tRNA modifying enzyme [Sebaldella termitidis ATCC 33386] Length = 430 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 130/441 (29%), Positives = 229/441 (51%), Gaps = 28/441 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ ++ F GY V D AD+ V+NTC + A +K L R + + Sbjct: 13 GCKVNQYETEIIKKDFLENGYNEVEFEDRADVYVINTCTVTSIADKKNKKMLRRAKKI-- 70 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG---PQTYYRLPELLERARFGKRV 149 D +V+ GC AQ E+ L+ V+ ++G + Y++ F K++ Sbjct: 71 -----NPDSVVIATGCYAQTNVED-LKEIKEVDYIIGNVKKEEVYKI--------FSKKL 116 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKR-GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++Y V++ F++ Y R AF+ IQ+GC KFC++C +PY RG+ SR Sbjct: 117 --SNYQVDNIFDQKEYSSQKYAVSRDKARAFVKIQDGCTKFCSYCKIPYARGMSRSRQPE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 V++E + L + G EI + G N++ + G D GE F +L + +I+ + R+R ++ Sbjct: 175 SVLEEIKFLGEAGYKEIVVTGINLSEY---GSDFGENINFDYILEKILKIEEIDRVRVSS 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P +S+ I + LMP+LH+ +QS D+ILK M R + A +++ +++ P Sbjct: 232 VYPDTLSEKFISLLKENKKLMPHLHVSIQSLDDKILKLMKRNYRAEFVVELLKKVQEEVP 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D AI++D I GFP E +++F T + + KI ++ F YS R T + +++ VK Sbjct: 292 DSAITADIITGFPQEEEENFWNTFENMKKINFSDFHIFPYSDREKTAAAAFTGKIEPEVK 351 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447 ER+ L+K + + F + + + +V IE+ + GK G + V +NS +H + Sbjct: 352 KERVKILEKLKKSKIKEFREKFLDTVQKVYIEEI--KAGKAYGYTENYLRVEVNSVSHKV 409 Query: 448 GDIIKVRITDVKISTLYGELV 468 DI++V+I L GE++ Sbjct: 410 ADIVEVKIMSSAGDLLKGEVI 430 >gi|315652513|ref|ZP_07905497.1| Fe-S oxidoreductase [Eubacterium saburreum DSM 3986] gi|315485229|gb|EFU75627.1| Fe-S oxidoreductase [Eubacterium saburreum DSM 3986] Length = 459 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/416 (29%), Positives = 217/416 (52%), Gaps = 41/416 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+ + + GY V+ + AD+ ++NTC + A K L R R + Sbjct: 8 TLGCKVNTYETEAMQQLMEAAGYRCVDFGEKADIYIINTCSVTNIADRKSRQMLHRARKM 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL----PELLERARFG 146 D +VV AGC ++ + I I +++VG + E L+ Sbjct: 68 -------NEDAIVVAAGCYVESAKKRIDEDLSI-DIIVGNNNKNEIVNIINEYLQDKNEN 119 Query: 147 KRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 K ++D + S + ++F I D AF+ +Q+GC++FC++C++P+TRG SR Sbjct: 120 KFIIDINKSSDYEEFHISKINDH-------TRAFIKVQDGCNQFCSYCIIPFTRGRVRSR 172 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--------------------EKC 245 + +++E +K D+G E+ L G +++++ LD +K Sbjct: 173 KMENIIEEVKKFADSGYKEVVLTGIHLSSYGIDFLDESYNKRMEWLTAREESDEEFVKKN 232 Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 +L+ ++SE+ G+ R+R + PR + + IK+ G++D P+ HL +QSG D+ LKS Sbjct: 233 ELLNLIENISEVDGIERIRIGSLEPRIIKEDFIKSLGNIDKFCPHFHLSLQSGCDKTLKS 292 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 MNR+++ E+ + ++ IR AI++D IVGFPGE+ DF + + ++K+ + + F Sbjct: 293 MNRKYSVDEFYKGVEIIRKYFDSPAITTDIIVGFPGESKLDFEESKNFIEKVKFYETHIF 352 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 YS R GT +NM QVD N KA+R L + Q F +G+ E+L E++ Sbjct: 353 PYSIREGTKAANM-PQVDGNEKAKRANILSEINLVNQREFRKLRLGKADEMLCEEN 407 >gi|145629674|ref|ZP_01785471.1| hypothetical protein CGSHi22121_01467 [Haemophilus influenzae 22.1-21] gi|144978185|gb|EDJ87958.1| hypothetical protein CGSHi22121_01467 [Haemophilus influenzae 22.1-21] Length = 445 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 149/471 (31%), Positives = 242/471 (51%), Gaps = 54/471 (11%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 Q P FV S GC N+ DS R+ + GY V S ++ DL+++NTC + A ++ Sbjct: 2 QNSTPSIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQE 60 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 +G ++E G V+V GC+ E ++I P V V GP +Y + + Sbjct: 61 SLEAIGE-------ALEENGR--VIVTGCLGAKE-DQIREVHPKVLEVSGPHSYETV--M 108 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + ++ + Y+ + + + Y A+L I EGCD CTFC++P R Sbjct: 109 AQVHKYVSKPTHNPYTSLVPKQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMR 161 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTF------- 247 G SRS++QV+DEA++L + GV E+ ++ Q+ +A+ R +G G K F Sbjct: 162 GDLESRSITQVLDEAKRLAEAGVKELLVVSQDTSAYSMDLKRQEG--GVKTAFWNGMPIK 219 Query: 248 SDLLYSLSEIKGL---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 +DL+ ++ L VRL Y +P D LI D L+PYL +P+Q S +ILK Sbjct: 220 NDLMTLCKQLGKLGIWVRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHASPKILK 276 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 +M R + + I + R + PD+ + S FIVGFPGET++DF+ +D + + + Sbjct: 277 AMKRPGSIDRTLERIKQWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGC 336 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHG 422 FK+SP G P + M +QV E+VK ER + +Q++S N +G+ ++VL+++ Sbjct: 337 FKFSPVEGAPATEMADQVPEDVKEERFHRFMQ--LQQEISANRLKQKIGKTLDVLVDEID 394 Query: 423 KEKGKLVGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 +E ++GRS P + +V L+ N +GD+IKV IT+ L+G Sbjct: 395 EE--GIIGRSKADAPEVDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 443 >gi|257062069|ref|YP_003139957.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 8802] gi|256592235|gb|ACV03122.1| MiaB-like tRNA modifying enzyme YliG [Cyanothece sp. PCC 8802] Length = 449 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 139/447 (31%), Positives = 224/447 (50%), Gaps = 29/447 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRI 87 + GC+ N DS M + GY+ + + AD +++NTC I+E E V + + Sbjct: 9 ISHLGCEKNRIDSEHMLGLLAEAGYQIDGNEELADYVIVNTCSFIQEARQESVRTLV--- 65 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L + K ++++GC+AQ EE+L P +VG Y + ++++R G+ Sbjct: 66 -ELAEANKK------IIISGCMAQHFQEELLEELPEAVAIVGTGDYQTIVDVVQRVENGE 118 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEIS 204 RV S F I D R R T A+L + EGCD C FC++P+ RG + S Sbjct: 119 RV--KAISTTPTF----IADESIPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263 RS+ +V EA++L D GV E+ L+ Q + G L GE ++LL L ++ VR+ Sbjct: 173 RSIESIVTEAQQLADQGVQELILISQITTNY-GLDLYGEP-KLAELLRELGKVDIPWVRI 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P ++ +I A + ++PYL LP+Q +ILK+MNR II+RI+ Sbjct: 231 HY--AYPTGLTSPVIAAIRETPNVLPYLDLPLQHSHPQILKTMNRPWQGQVNDSIIERIK 288 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P+ + + FIVGFPGET++ F ++ V + + F +S TP M QV Sbjct: 289 EAIPEAVLRTTFIVGFPGETEEHFDHLVNFVQRHEFDHVGVFTFSAEEETPAYQMSPQVP 348 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439 ++ ER L + + + N C+GQ + VLIE+ + G+L+GRS P + +V Sbjct: 349 PDIAQERRNLLMEVQQPISIKKNQNCIGQTVPVLIEQENPQTGQLIGRSPRFAPEVDGLV 408 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGE 466 + I+ V+IT + LYG+ Sbjct: 409 YVQGEAPLNTIVPVQITHADVYDLYGK 435 >gi|67920439|ref|ZP_00513959.1| Protein of unknown function UPF0004:Conserved hypothetical protein 1125 [Crocosphaera watsonii WH 8501] gi|67857923|gb|EAM53162.1| Protein of unknown function UPF0004:Conserved hypothetical protein 1125 [Crocosphaera watsonii WH 8501] Length = 437 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 139/451 (30%), Positives = 227/451 (50%), Gaps = 33/451 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC+ N DS M + ++GY+ + + AD +++NTC ++A E+ L + Sbjct: 9 ISHLGCEKNRIDSEHMLGLLAAKGYDIDANEELADYVIVNTCSFIQEAREESVRTLVELA 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 ++++GC+AQ EE+L P +VG Y ++ E+++R G+R Sbjct: 69 EANKK---------IIISGCMAQHFQEELLEELPEAVALVGTGDYQKIVEVVQRVETGER 119 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V T+ + F + D R R A+L + EGCD C FC++PY RG + SR Sbjct: 120 V--TEVTQNPSF----VADETTPRYRTTNEAVAYLRVAEGCDYRCAFCIIPYLRGNQRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264 S+ +V EA++L + GV EI L+ Q + G L G K ++LL +L ++ +R+ Sbjct: 174 SIESIVREAQQLAEQGVQEIILISQITTNY-GLDLYG-KPKLAELLRALGQVDVPWIRIH 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y ++P ++ +I A + ++PYL LP+Q ILKSMNR IID+++ Sbjct: 232 Y--AYPTGLTQTVIDAIRETPNILPYLDLPLQHSHPNILKSMNRPWQGQVNDNIIDKLKK 289 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+ + FIVGFPGET++ F + V + + F +SP TP M QV Sbjct: 290 AIPNAIFRTTFIVGFPGETEEYFEHLIKFVKRHEFDHVGVFTFSPEEETPAYQMQNQVLP 349 Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437 + ER L+ +Q+ + Q+ N VG+ +EVLIE+ + + +GRS P + Sbjct: 350 EIAQERRNYLMEIQQPISAQK---NQNYVGKTVEVLIEQENPQTQEHIGRSSRFAPEVDG 406 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV + II V+IT I LYG+++ Sbjct: 407 VVYVQGEAPLNSIIPVKITHADIYDLYGKVI 437 >gi|145635675|ref|ZP_01791371.1| hypothetical protein CGSHiAA_01509 [Haemophilus influenzae PittAA] gi|145267070|gb|EDK07078.1| hypothetical protein CGSHiAA_01509 [Haemophilus influenzae PittAA] Length = 445 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 148/471 (31%), Positives = 244/471 (51%), Gaps = 54/471 (11%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 Q P FV S GC N+ DS R+ + GY V S ++ DL+++NTC + A ++ Sbjct: 2 QNSTPSIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQE 60 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 +G ++E G V+V GC+ E ++I P V V GP +Y + + Sbjct: 61 SLEAIGE-------ALEENGR--VIVTGCLGAKE-DQIREVHPKVLEVSGPHSYETV--M 108 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + ++ + + Y+ + + + Y A+L I EGCD CTFC++P R Sbjct: 109 AQVHKYVSKPTHSPYTSLVPKQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMR 161 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTF------- 247 G SRS++QV+DEA++L + GV E+ ++ Q+ +A+ R +G G K F Sbjct: 162 GDLESRSITQVLDEAKRLAEAGVKELLVVSQDTSAYSMDLKRQEG--GVKTAFWNGMPIK 219 Query: 248 SDLLYSLSEIKGL---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 +DL+ ++ L VRL Y +P D LI D L+PYL +P+Q S +ILK Sbjct: 220 NDLMTLCKQLGKLGIWVRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHASPKILK 276 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 +M R + + I + R + PD+ + S FI+GFPGET++DF+ +D + + + Sbjct: 277 AMKRPGSIDRTLERIKQWREICPDLTLRSTFILGFPGETEEDFQLLLDFLKEAQLDRVGC 336 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHG 422 FK+SP G P ++M +QV E+VK ER + +Q++S N +G+ ++VL+++ Sbjct: 337 FKFSPVEGAPATDMADQVPEDVKEERFHRFMQ--LQQEISANRLKQKIGKTLDVLVDEID 394 Query: 423 KEKGKLVGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 +E ++GRS P + +V L+ N +GD+IKV IT+ L+G Sbjct: 395 EE--GIIGRSKADAPEVDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 443 >gi|145639398|ref|ZP_01795003.1| hypothetical protein CGSHiII_04472 [Haemophilus influenzae PittII] gi|145271445|gb|EDK11357.1| hypothetical protein CGSHiII_04472 [Haemophilus influenzae PittII] gi|309751757|gb|ADO81741.1| Ribosomal protein S12 methylthiotransferase [Haemophilus influenzae R2866] Length = 445 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 146/469 (31%), Positives = 241/469 (51%), Gaps = 50/469 (10%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 Q P FV S GC N+ DS R+ + GY V S ++ DL+++NTC + A ++ Sbjct: 2 QNSTPSIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQE 60 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 +G ++E G V+V GC+ E ++I P V V GP +Y + + Sbjct: 61 SLEAIGE-------ALEENGR--VIVTGCLGAKE-DQIREVHPKVLEVSGPHSYETV--M 108 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + ++ + Y+ + + + Y A+L I EGCD CTFC++P R Sbjct: 109 AQVHKYVSKPTHNPYTSLVPKQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMR 161 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLDGEKCTF-------SD 249 G SRS++QV+DEA++L + GV E+ ++ Q+ +A+ + + G K F +D Sbjct: 162 GDLESRSITQVLDEAKRLAEAGVKELLVVSQDTSAYSMDLKRQVGGVKTAFWNGMPIKND 221 Query: 250 LLYSLSEIKGL---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 L+ ++ L VRL Y +P D LI D L+PYL +P+Q S +ILK+M Sbjct: 222 LMTLCKQLGKLGIWVRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHASPKILKAM 278 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + + I + R + P++ + S FIVGFPGET++DF+ +D + + + FK Sbjct: 279 KRPGSIDRTLERIKQWREICPNLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFK 338 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKE 424 +SP G P + M +QV E+VK ER + +Q++S N +G+ ++VL+++ +E Sbjct: 339 FSPVEGAPATEMADQVPEDVKEERFHRFMQ--LQQEISANRLKQKIGKTLDVLVDEIDEE 396 Query: 425 KGKLVGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 ++GRS P + +V L+ N +GD+IKV IT+ L+G Sbjct: 397 --GIIGRSKADAPEVDGLVYVDNLSGINVKVGDVIKVTITNSDAYDLWG 443 >gi|77917652|ref|YP_355467.1| 2-methylthioadenine synthetase [Pelobacter carbinolicus DSM 2380] gi|123729547|sp|Q3A8J5|RIMO_PELCD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|77543735|gb|ABA87297.1| SSU ribosomal protein S12P methylthiotransferase [Pelobacter carbinolicus DSM 2380] Length = 455 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 138/451 (30%), Positives = 228/451 (50%), Gaps = 29/451 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N+ D+ M +E AD+I++NTC I + E V + L I Sbjct: 16 SLGCAKNLVDAEVMLGYLPQDRFEITTDEAQADIIIVNTCGFISDAKEESVETLLEAIEY 75 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K+ G L+VV GC++Q E++ + P V++++G R+ EL+E G+ V Sbjct: 76 KKS-----GNCTLLVVTGCLSQRYAEDMAKELPEVDILLGTGDVPRILELIEAHDRGEDV 130 Query: 150 VDT----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + Y + R++ + ++ I EGC+ C++C++P RG SR Sbjct: 131 RQSVGLPQYLYDHTTPRVA-------SSPFYSTYVKIAEGCNNLCSYCIIPQLRGPLRSR 183 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S++ VV E +L+ G E+ L+ Q++ A+ DG + LL L +I L LR Sbjct: 184 SIASVVAEVERLVAAGAQEVNLIAQDITAFGADRHDG--ASLEGLLRELVKISELRWLRL 241 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P +SD LI+ + + Y +P+Q DR+L MNRR R +I R+R Sbjct: 242 LYAYPDGISDELIELVATEEKICSYFDVPLQHIDDRVLARMNRRVGEDTIRDLIHRMRQR 301 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD+ + + FIVGFPGETD +F + V++ + + F+YS TP +++ +QV E Sbjct: 302 IPDLTLRTSFIVGFPGETDAEFAKLLAFVEEGHFDRVGVFRYSREEDTPAASLPDQVPEG 361 Query: 386 VKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ-S 437 VK R L K +Q+VSF N A +G++ VL+E + +E G+ + ++P + Sbjct: 362 VKKSRYNKLMKA--QQRVSFRRNRALIGRVEPVLVEGYSEETELLLSGRSIRQAPDVDGQ 419 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + + ++G I+ +RITD L GE+V Sbjct: 420 VYITAGQADVGQIVPLRITDSSEYDLIGEIV 450 >gi|261866815|ref|YP_003254737.1| ribosomal protein S12 methylthiotransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412147|gb|ACX81518.1| hypothetical protein D11S_0094 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 443 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 140/464 (30%), Positives = 221/464 (47%), Gaps = 46/464 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P S GC N+ DS R+ S GY + S ++ADL+++NTC + A ++ Sbjct: 3 TPPNIGFVSLGCPKNLVDSERILTELRSNGYNIIPSYENADLVIVNTCGFIDSAVQESLE 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G ++E G V+V GC+ E ++I + P V + GP +Y + Sbjct: 63 AIGE-------ALEENGK--VIVTGCLGAKE-DQIRQVHPKVLEISGPHSYETV-----M 107 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K V YS +E L + G A+L I EGCD CTFC++P RG Sbjct: 108 NQVHKYVPKPQYS---PYESL-VPAQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDL 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTF 247 SR ++QV+DEA++L+D GV E+ ++ Q+ +A W G + K Sbjct: 164 DSRPITQVLDEAKRLVDAGVKELLIVSQDTSAYALDQSKENQNKTVFWNGMPI---KNNL 220 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 L L + VRL Y +P + A G L +PYL +P+Q S +ILK+M Sbjct: 221 ISLCRQLGNLGVWVRLHYVYPYPHVDDLIPLMAEGKL---LPYLDIPLQHASPKILKTMK 277 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + I + R + P++ + S FIVGFPGET++DF+ +D + + FK+ Sbjct: 278 RPGKIDRTLERIQQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKAAQLDRVGCFKF 337 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425 SP G P ++M +QV E VK ER + +E + +G+ + V++++ + Sbjct: 338 SPVEGAPATDMPDQVPEEVKEERFHRFMQVQQEISAARLQQKIGKTLSVIVDEVNMKGVI 397 Query: 426 GKLVGRSPWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYG 465 G+ + +P + VV NIGD+I V ITD L+G Sbjct: 398 GRSMADAPEIDGVVYVENQSQSAVNIGDVISVTITDADEYDLWG 441 >gi|325662160|ref|ZP_08150778.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium 4_1_37FAA] gi|331085957|ref|ZP_08335040.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471609|gb|EGC74829.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium 4_1_37FAA] gi|330406880|gb|EGG86385.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium 9_1_43BFAA] Length = 438 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 129/429 (30%), Positives = 232/429 (54%), Gaps = 37/429 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+++ GYE V + AD+ ++NTC + A K + R + + Sbjct: 10 GCKVNAYETEAMQELLEQNGYEIVPFQEGADIYIINTCTVTNMADRKSRQMIHRAKKM-- 67 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---- 148 D +VV AGC QA+ E + +++V+G L E+LE ++ Sbjct: 68 -----NPDAIVVAAGCYVQAQ-ENSDKIDECIDIVIGNNKKQNLIEILEEYEQKRKEADG 121 Query: 149 ------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 V+D +++ E +E L + + + A++ +Q+GC++FCT+C++PY RG Sbjct: 122 VFVQQEVIDINHTKE--YEELHLTKTAEHTR----AYIKVQDGCNQFCTYCIIPYMRGRV 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 SR +VV+E L NG E+ L G +++++ G+D EK T L+ ++ I+G+ Sbjct: 176 RSRRKEEVVEEVSALAANGYKEVVLTGIHLSSY---GVDFEEKETLLSLIQAVHAIEGIE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R + PR +++ A L + P+ HL +QSG + LK MNRR++A EY + Sbjct: 233 RIRLGSLEPRIITEEFASALSALPKICPHFHLSLQSGCEETLKRMNRRYSAEEYFEKCML 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R + A+++D IVGFPGET+++F + V+K+ + + FKYS R GT + M Q Sbjct: 293 LRKYFENPALTTDIIVGFPGETEEEFEESRAFVEKVNFYETHIFKYSKRQGTKAAVMPNQ 352 Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSP-WL 435 V E K +R LL L ++ R+ ++ + G+ E+L+E+ ++ GK +G + ++ Sbjct: 353 VPEPEKTKRSNTLLALDERNRK---AYEEQFAGKETEILVEEQMEKDGKTYWIGHTKEYI 409 Query: 436 QSVVLNSKN 444 + +L+ +N Sbjct: 410 RLAILSDEN 418 >gi|289449689|ref|YP_003474403.1| MiaB-like protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184236|gb|ADC90661.1| MiaB-like protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 463 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 134/447 (29%), Positives = 220/447 (49%), Gaps = 28/447 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ + F + GYE V+ AD+ VLNTC + +A K L R R Sbjct: 27 GCKVNRYETDAVAQQFATAGYEVVDFDSVADIYVLNTCAVTGEAGRKSGQMLRRAR---- 82 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFGKR-- 148 K+ +V V GC Q GE ++VVG Q R+ +E RA + + Sbjct: 83 ---KKNPAAVVAVMGCHVQLGGE-----CSAADIVVGTQGKKRVFAAVEHFRAEWAEHNF 134 Query: 149 VVDTDYSVEDKFERLSIVD-------GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 D + D + L++ D G +++ A++ IQ+GC+ FC++C +P+ RG Sbjct: 135 AADARPARLDMIQTLALADAPDFEDFGAVDQQSETRAYIKIQDGCNNFCSYCAIPFARGR 194 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 SRS ++ E R + G E+ + G +V ++ G+ + L L+E+ GL Sbjct: 195 VRSRSEESILREGRGIAAAGFKEVVITGIHVCSY-GRDRGESSTALTSLCAKLAELPGLE 253 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R + P +S I+A L P+ HL +QSGSD +L+ M RR+T YRQ+++ Sbjct: 254 RIRLGSLEPLSVSAAFIEAASANPKLCPHFHLSLQSGSDTVLRRMRRRYTTENYRQVVNG 313 Query: 322 IRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R+ + + +++D IVGFPGET+ +F T+ ++ + + F+YS R GT + Sbjct: 314 LRAAYGERLGLTTDIIVGFPGETEAEFAETVAFCREMSFTRMHIFRYSERAGTAATQFEG 373 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 +V+ +V A R L K E Q + G+ VL+E+ KE G G +P +VL Sbjct: 374 KVEASVAAYRAEELAKVAAELQAAHQARRQGKNDLVLLEQRDKE-GYFEGYAPNYDPIVL 432 Query: 441 NSKNHNI--GDIIKVRITDVKISTLYG 465 + G II VR+ ++ G Sbjct: 433 GFDTSELKSGLIIPVRLIGIRNGRFIG 459 >gi|229825044|ref|ZP_04451113.1| hypothetical protein GCWU000182_00394 [Abiotrophia defectiva ATCC 49176] gi|229790791|gb|EEP26905.1| hypothetical protein GCWU000182_00394 [Abiotrophia defectiva ATCC 49176] Length = 464 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 124/404 (30%), Positives = 212/404 (52%), Gaps = 20/404 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ ++ S GC N+ DS M +GYE + + +AD V+N+C A E+ + Sbjct: 1 MTEKIYLVSLGCDKNLVDSEIMLGFLKREGYEITDELYEADYAVVNSCCFIGDAKEESIN 60 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + I LK KEG ++V GC+AQ I P + V+G Y + ++ Sbjct: 61 TIIEIGELK----KEGKLKGLIVTGCLAQRYQSLITEELPEADAVIGTTAYDNIVAAIDE 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKR----GVTAFLTIQEGCDKFCTFCVVPYT 198 + ++ + +ED +RL+ GG + +++++ I EGC+K CT+C++PY Sbjct: 117 IKTKQKKDNKSLYIED-LDRLA---GGEEVRLVPAGEISSYIKIAEGCNKRCTYCIIPYI 172 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG S + ++ EA L G E+ L+ Q + G + G+K DL++ LS+I Sbjct: 173 RGNFRSIPMETIIKEAESLAAQGTKELLLVAQETTLY-GTDIYGKKA-LPDLVHELSKIS 230 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ +R +P +++D +I A + + Y+ LP+Q SD ILK M RR E R+ Sbjct: 231 GIEWIRLLYCYPEEITDEIIYAIKNEKKVCHYIDLPIQHSSDSILKRMARRTNQAELRER 290 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I ++R PDI + + I GFPGET+DDF+ + VD++ + + F YS GTP + M Sbjct: 291 IAKLREEIPDITLRTTLITGFPGETEDDFKELYNFVDEMEFDRLGVFTYSAEEGTPAAEM 350 Query: 379 LEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE 419 Q+DE VK R ++ LQ+++ ++ + +G++ EVL+E Sbjct: 351 ENQIDEEVKVARRNEIMELQQEISAEKA---EGRIGKVYEVLVE 391 >gi|288957725|ref|YP_003448066.1| miaB-like tRNA modifying enzyme [Azospirillum sp. B510] gi|288910033|dbj|BAI71522.1| miaB-like tRNA modifying enzyme [Azospirillum sp. B510] Length = 423 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 136/437 (31%), Positives = 220/437 (50%), Gaps = 31/437 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + ++GC++N Y+S M + S G + D++++NTC + +A + + ++R Sbjct: 15 IVTFGCRLNSYESEVMRNHARSAGLD--------DVVIVNTCAVTSEAERQARQTIRKLR 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +E D +VV GC AQ + + P V+ V+G Q + PE K Sbjct: 67 -------RERPDARIVVTGCAAQIDPQRFAA-MPEVDQVLGNQEKLQ-PESWGLPPAEKV 117 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 +V+ SV++ L + G +R R AF+ +Q+GCD CTFC++PY RG S + Sbjct: 118 LVNDIMSVKETAGHL--IGGFEDRAR---AFVQVQQGCDHRCTFCIIPYGRGPSRSVPIG 172 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V++ + L+ G E+ L G ++ ++ G L G + L+ + L RLR ++ Sbjct: 173 GIVEQVQALVKAGYNEVVLSGVDITSY-GPDLPGSPSLGQMVRRLLALVPELPRLRLSSI 231 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +M D L + G+ LMP+LHL +Q+G D +LK M RRH + R+RSVRPD Sbjct: 232 DCIEMDDDLWRLIGNEPRLMPHLHLSLQAGDDMVLKRMKRRHGRADSIAFCQRVRSVRPD 291 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + +DFI GFP ET++ F+ T+ LV++ G F YSPR GTP + M QVD V+ Sbjct: 292 VVFGADFIAGFPTETEEMFQNTLRLVEECGLTWLHVFPYSPRPGTPAARM-PQVDGAVRK 350 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 ER L+ + + VG+ VL+EK +GR+ ++ L + G Sbjct: 351 ERAARLRAVGEVAEARALASLVGRTATVLVEKED------LGRTEHFAAIRLG-RPFPPG 403 Query: 449 DIIKVRITDVKISTLYG 465 ++ IT +K L G Sbjct: 404 ALVPAAITGIKDGVLTG 420 >gi|332248856|ref|XP_003273581.1| PREDICTED: CDK5 regulatory subunit-associated protein 1 isoform 2 [Nomascus leucogenys] Length = 546 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 134/458 (29%), Positives = 220/458 (48%), Gaps = 73/458 (15%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREKA + +++ L Sbjct: 136 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 195 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y LP+LL A Sbjct: 196 HQLKALKTRRPRSRVPLKIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPQLLAVAE 255 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ + S+++ + + V + +AF++I GCD C++C+VP+TRG E S Sbjct: 256 SGQQAANVLLSLDETYADVMPVQTSPS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 312 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ + L E+K L Sbjct: 313 RPIASI-------------------------------------------LEEVKKLSEQV 329 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 H RD + +HLP QSGS R+L++M R ++ Y +++ IR Sbjct: 330 LQLIHERDN-------------ICKQIHLPAQSGSSRVLEAMWRGYSREAYVELVHHIRE 376 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVD 383 P +++SSDFI GF GET++D T+ L+ ++ Y F F YS R T + L + V Sbjct: 377 SIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNIGFLFAYSMRQKTRAYHRLKDDVP 436 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPW-LQSVVLN 441 E VK RL L RE+ N VG VL+E K L GR+ L+ + + Sbjct: 437 EEVKLRRLEELITVFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPD 496 Query: 442 SKNHNI-----------GDIIKVRITDVKISTLYGELV 468 ++ ++ GD + V+IT TL G ++ Sbjct: 497 AEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 534 >gi|305667336|ref|YP_003863623.1| hypothetical protein FB2170_13853 [Maribacter sp. HTCC2170] gi|88709384|gb|EAR01617.1| hypothetical protein FB2170_13853 [Maribacter sp. HTCC2170] Length = 437 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 132/419 (31%), Positives = 209/419 (49%), Gaps = 23/419 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F GYERV+ + AD+ V+NTC + E A + R + + Sbjct: 8 TLGCKLNFSETSTIARGFQKDGYERVDFSEHADMYVINTCSVTENADK-------RFKTI 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 IK+ + GC AQ + E+ L V++V+G +++ + + K + Sbjct: 61 VKQAIKKNPQAFIAAIGCYAQLKPEQ-LAAVDGVDLVLGATEKFKISDYIND--LSKNEI 117 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +S E E S V G Y AFL +Q+GCD CTFC +P RGI S ++ V Sbjct: 118 GEVHSCEID-EADSFV-GSYAIGDRTRAFLKVQDGCDYKCTFCTIPLARGISRSDTMDNV 175 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLRYTT 267 + A ++ G+ EI L G N+ + GKG G K TF DL+ +L + G+ RLR ++ Sbjct: 176 LKNAAEISSKGIKEIVLTGVNIGDF-GKGEFGNKKHEHTFLDLVNALDNVDGVHRLRISS 234 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P + + I + +P+ H+P+QSGSD IL+ M RR+ Y + RI+ V P Sbjct: 235 IEPNLLKNETIDFVSKSNSFVPHFHIPLQSGSDEILRLMKRRYQKELYVDRVKRIKDVMP 294 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 I D IVGFPGETDD F T ++++ + F YS R TP S M + V + V+ Sbjct: 295 FACIGVDVIVGFPGETDDHFLETYHFLNELNVSYLHVFTYSERDNTPASEMTDPVPQKVR 354 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRSPWLQSVV 439 +R L+ +++ +F + + + VL E HG + + +SPW S+V Sbjct: 355 TKRSKMLRALSVKKRRAFYEGQLNRRKTVLFEGENKDGYIHGFTENYVKVKSPWKPSLV 413 >gi|78183934|ref|YP_376369.1| hypothetical protein Syncc9902_0353 [Synechococcus sp. CC9902] gi|123757134|sp|Q3B002|RIMO_SYNS9 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|78168228|gb|ABB25325.1| Protein of unknown function UPF0004 [Synechococcus sp. CC9902] Length = 466 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 135/453 (29%), Positives = 230/453 (50%), Gaps = 40/453 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91 GC+ N D+ M + GY +DA ++V+NTC I++ E V + +G Sbjct: 24 GCEKNRVDTEHMVGLLAEAGYGVSTDEEDASVVVVNTCSFIQDAREESVRTLVG------ 77 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151 + E G L++ AGC+AQ EE+L P +VG Y + ++L+R G+RV Sbjct: 78 ---LAEQGKELII-AGCLAQHFQEELLESIPEAKAIVGTGDYQHIVDVLQRVEAGERV-- 131 Query: 152 TDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 S F + D R+R A+L + EGCD C FC++P RG + SR + Sbjct: 132 NRVSAVPSF----VGDEHLPRQRTTDQAVAYLKVAEGCDYRCAFCIIPKLRGDQRSRPIE 187 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267 +V EA +L + GV E+ L+ Q + G L G K ++LL +L E++ +R+ Y Sbjct: 188 SIVAEAHQLAEQGVQELILISQITTNY-GLDLYG-KPKLAELLRALGEVEIPWIRVHY-- 243 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++ ++ A+ D+ ++PYL LP+Q +L++MNR A ++++ IR P Sbjct: 244 AYPTGLTASVVAAYRDVPNVVPYLDLPLQHSHPDVLRAMNRPWQADVNERLLNEIREQLP 303 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D + + IVGFPGET++ F+ ++ + F +SP GT +++ +VD +V Sbjct: 304 DAVLRTTLIVGFPGETEEHFQHLKHFLETQRFDHVGIFTFSPEDGTAAADLPNRVDPDVA 363 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440 R L+ LQ+ + ++ N VG+ ++VLIE+H + G+++GR +P + V Sbjct: 364 QARKDALMALQQPIAAER---NQRWVGKTVDVLIEQHNPQTGEMIGRCARFAPEVDGEVH 420 Query: 441 -----NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + G + V+IT I L G +V Sbjct: 421 VQPGDDGQQAAPGSFVPVKITGADIYDLTGHIV 453 >gi|78213845|ref|YP_382624.1| hypothetical protein Syncc9605_2337 [Synechococcus sp. CC9605] gi|123756842|sp|Q3AH63|RIMO_SYNSC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|78198304|gb|ABB36069.1| Protein of unknown function UPF0004 [Synechococcus sp. CC9605] Length = 458 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 136/452 (30%), Positives = 230/452 (50%), Gaps = 38/452 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N D+ M + GY DA ++V+NTC + A E+ +R L Sbjct: 16 GCEKNRVDTEHMVGLLAEAGYGVSTDESDAAVVVVNTCSFIQDAREE------SVRTL-- 67 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 + E G L++ AGC+AQ EE+L P +VG Y + ++L+R G+RV Sbjct: 68 VELAEQGKELII-AGCLAQHFQEELLESIPEAKAIVGTGDYQHIVDVLQRVEVGERV--N 124 Query: 153 DYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 S F + D R+R AFL + EGCD C FC++P RG + SR + Sbjct: 125 RVSAVPTF----VGDEHLPRQRTTDQAVAFLKVAEGCDYRCAFCIIPKLRGDQRSRPIES 180 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTS 268 +V EA +L GV E+ L+ Q + G L G K ++LL +L +++ +R+ Y + Sbjct: 181 IVAEAHQLAAQGVQELILISQITTNY-GLDLYG-KPKLAELLRALGDVEIPWIRVHY--A 236 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ ++ A+ ++ ++PYL LP+Q +L++MNR A +++D+IR PD Sbjct: 237 YPTGLTPDVLAAYREVPNVVPYLDLPLQHSHPEMLRAMNRPWQADVNDRLLDQIREQLPD 296 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + + IVGFPGET++ F+ M +++ + F +SP GT +++ ++VD V Sbjct: 297 AVLRTTLIVGFPGETEEHFQHLMGFLERQRFDHVGVFTFSPEDGTAAADLPDRVDPEVAQ 356 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV-- 439 R L+ LQ+ + ++ N VG+ ++VLIE+H + G+++GR +P + V Sbjct: 357 ARKDALMALQQPISAER---NSRWVGRTVDVLIEQHNPQTGEMIGRCARFAPEVDGEVRV 413 Query: 440 ---LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + G ++ V IT I L G++V Sbjct: 414 QPGAEGQQAAPGSLVPVEITGADIYDLNGQMV 445 >gi|254494844|ref|ZP_01051876.2| MiaB-like tRNA modifying enzyme [Polaribacter sp. MED152] gi|213690426|gb|EAQ41304.2| MiaB-like tRNA modifying enzyme [Polaribacter sp. MED152] Length = 444 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 125/427 (29%), Positives = 219/427 (51%), Gaps = 39/427 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F ++G+E+V+ + AD+ V+NTC + + A + R +++ Sbjct: 11 TLGCKLNFSETSTIARNFVNEGFEKVDFEEVADIYVINTCSVTDNADK-------RFKSI 63 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGK 147 + +K+ + ++ GC AQ + EE L V++V+G + + L + G+ Sbjct: 64 VKNALKKNENAFLIAVGCYAQLKPEE-LAAVDGVDLVLGATEKFNVTSYLNDLSKNDLGE 122 Query: 148 ----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +VD D+ V G Y+ AFL +Q+GCD CT+C +P RGI Sbjct: 123 VHSCEIVDADFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 171 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260 S +L V++ A+++ G+ EI L G N+ + GKG G K TF +L+ L ++G+ Sbjct: 172 SDTLQNVINNAKEISSKGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVKELDLVEGI 230 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ P + D I + +P+ H+P+QSGSD++LK M RR+ Y ++ Sbjct: 231 HRLRISSIEPNLLKDETIDFVSKSNSFVPHFHIPLQSGSDKLLKKMKRRYLKNTYTNRVN 290 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +I+ V P+ I D IVGFPGETD+ F T + ++ + + F YS R T + Sbjct: 291 KIKEVMPNACIGVDVIVGFPGETDELFLETYNYLNDLNISYLHVFTYSERPNTEAVDFDG 350 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RS 432 V + +A+R L+ +++ +F ++ +G + VL E KE G + G ++ Sbjct: 351 VVPKKTRAKRSKMLRGLSAKKRRAFYESQLGNTLTVLFENENKE-GYINGFTENYVKVKT 409 Query: 433 PWLQSVV 439 PW +V Sbjct: 410 PWNPELV 416 >gi|312898442|ref|ZP_07757832.1| MiaB-like tRNA modifying enzyme YliG [Megasphaera micronuciformis F0359] gi|310620361|gb|EFQ03931.1| MiaB-like tRNA modifying enzyme YliG [Megasphaera micronuciformis F0359] Length = 443 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 138/439 (31%), Positives = 229/439 (52%), Gaps = 30/439 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M + + + AD+I++NTC EKA ++ + + Sbjct: 8 SLGCSKNLIDTEVMLGILKDKHMGMTDDPAQADIIIVNTCTFIEKAKQESIDAI-----I 62 Query: 91 KNSRIK-EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + R K EG +++V GC++Q EE+L+ P V+ ++G ++ R+ E + + GKR Sbjct: 63 EAGRYKTEGRCKILIVTGCLSQQYQEELLKELPEVDALLGTGSWDRIWEAVTAGKTGKRA 122 Query: 150 --VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 +D + D+ + Y +A++ I EGC+ CTFC++P+ RG SR++ Sbjct: 123 CFMDDVSHLYDQNTSRVLTTPTY------SAYVKIGEGCNNGCTFCIIPHVRGPLYSRTV 176 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 V E R+L GV EI L+ Q+ ++ G L G K DLL L +I+G+ +R Sbjct: 177 ESVTAEVRQLAAGGVKEINLIAQDTTSY-GFDLAG-KSLLPDLLRELVKIEGIEWIRLFY 234 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P +D L + + + PY+ LP+Q S +LK MNRR + + ++ID++ + Sbjct: 235 LYPHFFTDELTELIVKEEKICPYVDLPLQHISQSVLKRMNRRDSQADILKLIDKLTAHGR 294 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + + S FIVGFPGET+++F+ D V++ + F YS GTP + M +Q+ E VK Sbjct: 295 KLTLRSTFIVGFPGETEEEFQELCDFVERTKFDAVGVFTYSQEEGTPAAAMADQIPEEVK 354 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL--VGR----SPWLQSV 438 E RL+ +Q K+ E++ N G I ++E+ E G L VGR +P + + Sbjct: 355 EERYHRLMAIQAKVSEER---NRDLEGSIHPFIVEELTDESGHLQAVGRLDIQAPEVDGL 411 Query: 439 --VLNSKNHNIGDIIKVRI 455 V ++K GDII VR+ Sbjct: 412 TYVEDAKGLKEGDIIPVRV 430 >gi|293115612|ref|ZP_05792317.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus DSM 2876] gi|292809090|gb|EFF68295.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus DSM 2876] Length = 444 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 130/445 (29%), Positives = 235/445 (52%), Gaps = 31/445 (6%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKV 80 I ++ + S GC++N Y++ M+ M S GYE V ++ AD+ ++NTC + A K Sbjct: 5 ITMKKCALHSLGCKVNSYETQAMQKMMESAGYEIVPFGEEIADIYIINTCSVTNIADRKS 64 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 + + + L + +V AGC ++ G+ I V++V+G L E+L Sbjct: 65 RQMIHKAKKL-------NPEAVVAAAGCYVESAGDNI---DEDVDIVIGNNEKSHLIEIL 114 Query: 141 -ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 E + D F+ L+I D R A++ IQ+GC++FC++C++PY R Sbjct: 115 NEYFEHMDKEKSVDIGKATGFDELNI-DSPLEHTR---AYVKIQDGCNRFCSYCIIPYVR 170 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS--DLLYSLSEI 257 G SR V+ E +++ +G E+ L G +++++ GLD + T D++ +++ I Sbjct: 171 GRIRSRKPDDVMAEIKRVAASGCKEVVLTGIHLSSY---GLDFKDSTVKLIDVIEAVNRI 227 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +G+ R+R + P +++ ++ + P+ HL +QSG D LK MNRR+ EY + Sbjct: 228 EGIERIRLGSLEPLIVTEEFVRRLAKCKKICPHFHLSLQSGCDETLKRMNRRYNVDEYYK 287 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++ +R PD A+++D IVGFPGET+++F T ++K+ + + FKYS R GT Sbjct: 288 GVELLREYFPDAAVTTDVIVGFPGETEEEFNITKKYLEKVCFYEMHVFKYSRRKGTAADK 347 Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG--KEKGKLVGRS 432 M +Q+ EN+K+ER LL L + L + + +G+ ++VL+E++ + K ++G + Sbjct: 348 MPDQIPENIKSERSTELLELNEILSN---GYREKYIGKKVKVLLEENHIIENKKYIIGFT 404 Query: 433 PWLQSVVLNSKNHNI--GDIIKVRI 455 V L + + I+ VR+ Sbjct: 405 DTYVRVALENPEEKLYTNQIVNVRV 429 >gi|304436321|ref|ZP_07396298.1| MiaB family RNA modification enzyme [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370676|gb|EFM24324.1| MiaB family RNA modification enzyme [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 442 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 143/455 (31%), Positives = 226/455 (49%), Gaps = 37/455 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRIRN 89 S GC N+ D+ M + G + N +AD++++NTC + A E+ + + LG Sbjct: 7 SLGCAKNLVDTEVMLGIMREHGIDITNDPSEADILIVNTCAFIQSAKEESITTVLGMADY 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + R + ++VAGC+ Q G+++L P + ++G + R+ E++E G+R+ Sbjct: 67 KETGRCRS-----LIVAGCLGQRYGQQLLDEIPEADAIIGTGAWSRIMEVIEATLKGRRL 121 Query: 150 V-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + DT Y K RL TA++ I EGCD C FC +P RG S Sbjct: 122 LIAGKDDTIYDA--KTPRLRTTPN-------YTAYVKIAEGCDHRCAFCAIPLIRGSFRS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVRL 263 R + +V E R+L GV E+ L+ Q+ + GLD +K LL L++I G+ + Sbjct: 173 RPMEDIVAEGRELAAAGVRELVLIAQDSANY---GLDCYQKPMLPTLLRELAKIDGIAWI 229 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R S+P+ +D LI+ ++ Y+ LP+Q D +L+SMNR T ++I ++R Sbjct: 230 RVLYSYPKYFTDELIEVFATEPKVVKYVDLPLQHAHDAVLRSMNRPDTRAGMEELIAKLR 289 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P +AI S FIVGFPGETD ++ V+K + + F YS T + M ++V Sbjct: 290 ARIPGVAIRSTFIVGFPGETDAQYQTLRRFVEKQRFDKVGIFTYSEEEDTAAAAMGKKVS 349 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS----PWL 435 E V ER L+ LQ K+ E+ N Q ++VLIE H E+ G VGRS P + Sbjct: 350 EEVMQERYHDLMSLQSKISEE---INIGLEHQELDVLIEGHDAEQSGIAVGRSYREAPEV 406 Query: 436 --QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 Q + G+I++VR+ + GE V Sbjct: 407 DGQIYIEGDAEGAPGEIVRVRLLQGFTYDIVGERV 441 >gi|217967713|ref|YP_002353219.1| MiaB-like tRNA modifying enzyme [Dictyoglomus turgidum DSM 6724] gi|217336812|gb|ACK42605.1| MiaB-like tRNA modifying enzyme [Dictyoglomus turgidum DSM 6724] Length = 417 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 125/393 (31%), Positives = 210/393 (53%), Gaps = 43/393 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN- 89 ++GC++N Y++ ++ + + G+E V +ADLI +N+C + A K + I+N Sbjct: 8 TFGCKVNQYETENLKILARNAGFEIVPFGKEADLIFINSCAVTHVAERKARRLINLIKNR 67 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 N++I +AGC A E + +++ V+ + + FG Sbjct: 68 FPNAKI--------ALAGCYA--ERLNLSSEKLVLDFVLDNKQKWEF--------FGGSE 109 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + ED+ A L IQ+GC+ FCT+C+VPY RG E S+ + Sbjct: 110 DSAFVTSEDR----------------ARAILKIQDGCNNFCTYCIVPYLRGRERSKPFDK 153 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 V++EA+KL++NG EI L G + A+ G+ L G+K S LL L E+ GLV++R ++ Sbjct: 154 VMEEAQKLVENGFKEIVLTGIRLGAY-GRDL-GDKDALSKLLLKLFEMDGLVKIRLSSIE 211 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P D+++ LIK D L + H+P+QSG D ILK MNRR+ + QI+ ++R PD+ Sbjct: 212 PMDITEGLIKL-ADHPKLCKHWHIPLQSGDDEILKKMNRRYDTKYFEQIVYKLREKVPDV 270 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV--K 387 AI++D IVG+P E++++F T +++G+ + F YSPR TP + E + + Sbjct: 271 AITTDIIVGYPEESEENFNNTYLFAERMGFMRIHVFPYSPRPFTPAYKLKPLPYEVITKR 330 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 E+L+ L L E+ VS + + +EV++E+ Sbjct: 331 KEKLIKLSNDLWERYVS---KFIEKELEVMVEE 360 >gi|37523886|ref|NP_927263.1| hypothetical protein gll4317 [Gloeobacter violaceus PCC 7421] gi|81708224|sp|Q7NDB8|RIMO_GLOVI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|35214892|dbj|BAC92258.1| gll4317 [Gloeobacter violaceus PCC 7421] Length = 437 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 138/462 (29%), Positives = 230/462 (49%), Gaps = 45/462 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P V GC+ N D+ M + GY+ + D A+ +++NTC S Sbjct: 1 MPATIAVTHLGCEKNRIDTEHMLGLLAQAGYQIDSDEDKAEYVLVNTC-----------S 49 Query: 83 FLG-----RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 F+G +R L N + E G +++AGC+ Q +E+L+ P +VG Y+R+ Sbjct: 50 FIGPARTESVRTLVN--LAEQGKK-IIIAGCLPQMFRDELLKEIPEAVAIVGTGDYHRIV 106 Query: 138 ELLERARFGKRV----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193 E++ER+R G+RV Y ++ R Y A+L I EGCD C FC Sbjct: 107 EVVERSRTGERVSLVSATPTYIADEHLPR-------YRTTTEAVAYLKIAEGCDYRCAFC 159 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 ++P+ RG + SR + +V EA++L GV E+ L+ Q ++ G L G K +DLL + Sbjct: 160 IIPHLRGDQRSRPIESIVAEAKQLASEGVKELILISQ-ISTNYGLDLYG-KPRLADLLRA 217 Query: 254 LSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L E+ VR+ Y ++P ++D L+ A ++PY +P+Q +L++MNR A Sbjct: 218 LGEVDIPWVRVHY--AYPTGLTDELLTAVEQTANVLPYFDVPLQHSHPEVLRAMNRPWQA 275 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 ++++RIR P+ + + IVGFPGE++ F V++ + F YS Sbjct: 276 DLNTRLLERIRERLPEATLRTTLIVGFPGESEAHFAHLCAFVERSEFDHVGVFAYSREEN 335 Query: 373 TPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 T +N+ Q+ E +K R L+ LQ+ + +++ N + VG+++ VLIE+ +K + Sbjct: 336 TAAANLEGQIPEAIKKRRRRDLMRLQQTISQRR---NASQVGRVVPVLIEQENTQKKVWL 392 Query: 430 GR----SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 GR SP + V+ + +I VRIT L GE+ Sbjct: 393 GRSARFSPEIDGQVIVCGGAALNQLIPVRITAATPYDLCGEV 434 >gi|123965349|ref|YP_001010430.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9515] gi|238066582|sp|A2BU62|RIMO_PROM5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|123199715|gb|ABM71323.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9515] Length = 454 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 133/458 (29%), Positives = 236/458 (51%), Gaps = 50/458 (10%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI----REKAAEKVYSFLGRIR 88 GC+ N+ D+ M+ + +GYE N+++DA ++V+NTC RE++ K+ F + + Sbjct: 22 GCEKNLVDTEHMQGLLDKEGYEVGNNLEDAKVVVVNTCSFIETAREESIRKILEFTDQGK 81 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 V+VAGC+AQ EE+L+ P + +VG Y ++ +++ R G+ Sbjct: 82 Q-------------VIVAGCMAQHFKEELLKEIPEIKALVGTGDYQKIAKVMNRVEKGEI 128 Query: 149 VVDT----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V + ++ ++K RL +D ++ A+L I EGCD C FC++P RG + S Sbjct: 129 VNEVSKVPEFIADEKIPRL--ID-----QKKFVAYLRIAEGCDYNCAFCIIPKLRGPQRS 181 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263 R++ ++ EA L + G+ EI L+ Q + G+ + G K + + LL LS++ +R+ Sbjct: 182 RTIESIILEATNLANQGIQEIILISQ-ITTNYGQDIYG-KPSLARLLKELSKVSVPWIRI 239 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P ++D +IKA D + ++PY LP+Q +LKSMNR A I+ +IR Sbjct: 240 HY--AYPTGLTDEVIKAFKDSNNIVPYFDLPLQHSHSDVLKSMNRPWQASLNESILSKIR 297 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P + + IVGFPGE F +D + K + F +SP GT ++ +V Sbjct: 298 DQIPSAVLRTSLIVGFPGEEQKHFLHLLDFLHKHKFDHVGVFIFSPEEGTSAFDLPNRVP 357 Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436 + + + ++ +Q+ + +++ N VG ++VL+EK K +L+GRS P + Sbjct: 358 SEIADARKDNIMSIQQNISKKK---NQLYVGTKVKVLVEKISK-NNELIGRSYHFAPEID 413 Query: 437 SVVLNS------KNHNIGDIIKVRITDVKISTLYGELV 468 V+ S +N+ +G ++ I LYGE++ Sbjct: 414 GNVILSIKKNVIENNYVGKFVEANICFADEYDLYGEVI 451 >gi|154482583|ref|ZP_02025031.1| hypothetical protein EUBVEN_00250 [Eubacterium ventriosum ATCC 27560] gi|149736608|gb|EDM52494.1| hypothetical protein EUBVEN_00250 [Eubacterium ventriosum ATCC 27560] Length = 437 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 133/441 (30%), Positives = 219/441 (49%), Gaps = 40/441 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M + GYE V+ D AD+ ++NTC + A K L + + Sbjct: 10 GCKVNSYETEAMTQLLKKAGYEIVSFQDQADVYIINTCSVTNMADRKSRQMLHKAK---- 65 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ----------TYYRLPELLER 142 K+ + +VV GC Q E++ + I ++VVG YY E E+ Sbjct: 66 ---KQNPNAVVVATGCYVQTATEKVAQDLSI-DLVVGNNRKKDIVEILNEYYAEKEAGEQ 121 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + V+D +++ D++E L I + + A L IQ+GC+ FC++C++PY RG Sbjct: 122 VK-EEYVIDINHT--DEYEDLEISTVTEHTR----AHLKIQDGCNNFCSYCIIPYARGRI 174 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR++ + E +L +G EI L G N++ + G D++ + G+ R Sbjct: 175 RSRTMESIKAELERLSASGFKEIVLTGINLSCYDDNGK-----KLIDVIEMADNVNGIER 229 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R + P +++ ++ G + + P+ H +QSG D+ LK+MNR +T+ EY + I Sbjct: 230 IRLGSLDPEVVTEDFVERLGKVKKICPHFHFSLQSGCDKTLKAMNRHYTSDEYYEKCQLI 289 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + A ++D IVGFPGET++D+ ++ + V K+ +A+ FKYS R GT + M Q+ Sbjct: 290 RKYIDNPAFTTDVIVGFPGETEEDYISSREFVKKVKFAELHVFKYSKRDGTVAAKMPNQI 349 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV--- 439 DE +K R L K E F A +GQ VL E EK L + W+ V Sbjct: 350 DEKIKTLRSEDLIKTGEELTKEFRQAKIGQDTTVLFE----EKILLDNKEYWVGHTVDYI 405 Query: 440 ---LNSKNHNIGDIIKVRITD 457 + K + G I KV + D Sbjct: 406 KIAVPEKENLEGQIRKVNVKD 426 >gi|95930239|ref|ZP_01312977.1| MiaB-like tRNA modifying enzyme [Desulfuromonas acetoxidans DSM 684] gi|95133702|gb|EAT15363.1| MiaB-like tRNA modifying enzyme [Desulfuromonas acetoxidans DSM 684] Length = 428 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 122/439 (27%), Positives = 220/439 (50%), Gaps = 17/439 (3%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + + GC+ N ++S ME M QGY+ V A+L+++NTC + + + R R Sbjct: 6 IVTLGCKANQFESAAMERMLREQGYQIVPFEQGAELVIVNTCTVTSATDAQSRKLVRRAR 65 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L G +VV GC AQ + ++I P V V+G L ++L + G + Sbjct: 66 RLN-------GQCRIVVTGCYAQIQPQQIAEL-PGVMYVIGNSEKQDLIDIL--CQEGPQ 115 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V D + + + L I + + AF+ IQ GC+ FC++C++PY RG S + S Sbjct: 116 VQVGDIASQQQCPDLKIASFSEHSR----AFVQIQSGCNAFCSYCIIPYARGRSRSVNTS 171 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 VVD+ +L+ G E+ L G ++ + G+ L +CT +DLL +L R+R + Sbjct: 172 AVVDQVNQLVAGGYREVVLTGIHIGNY-GQDLT-PQCTLTDLLNALLTQTDGCRIRLGSI 229 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P+++++ LI + P+ H+P+QSG D +L+ MNR ++ ++ ++ + P Sbjct: 230 EPQEVNEALIDCVQHSSRICPHFHIPLQSGCDDVLQQMNRHYSIRQFHDTVELLCQKIPR 289 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 ++I D I GFPGET+ R T + + + F +S R GTP + M +Q+ ++ Sbjct: 290 VSIGIDVISGFPGETEAQHRHTCEFISSLPVHYLHVFPFSARPGTPAATMPDQIPGDIAK 349 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 +R L+ E+ + + +G++++V++E K + G S +V++ + G Sbjct: 350 QRAAELRVLAEEKASQYREQFIGRLVDVVLESRTK-NNQWQGTSAEYLTVLVAGEQGAAG 408 Query: 449 DIIKVRITDVKISTLYGEL 467 +++ V I V + L G L Sbjct: 409 ELVSVEIVGVSQNFLVGTL 427 >gi|254479101|ref|ZP_05092453.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Carboxydibrachium pacificum DSM 12653] gi|214034950|gb|EEB75672.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Carboxydibrachium pacificum DSM 12653] Length = 436 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 129/446 (28%), Positives = 232/446 (52%), Gaps = 28/446 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS +M + +GY VN AD+I++NTC E A ++ ++ ++ L Sbjct: 8 SLGCPKNSVDSEKMLALLKEKGYNIVNDEKKADVIIINTCAFIEDAKKESIEYIIQMGEL 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K R+K ++ GC+++ +E+++ P ++ V+G + ++ +++E + GK+V+ Sbjct: 68 KKKRLK-----YLIATGCLSERYNKELIKELPELDAVIGTGDFTQIVDVIEEVKKGKKVL 122 Query: 151 D---TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D ++ R+ Y A+L I EGC C+FC++P RG SR + Sbjct: 123 KYGHPDLLNDEGIPRILTTPPYY-------AYLKIAEGCSNACSFCIIPKLRGKYKSRKM 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++EA++L GV E+ ++ Q+ + G+D +K LL LS+I+ L +R Sbjct: 176 ENIIEEAQELARKGVKELIIIAQDTTKY---GIDLYKKLMLPQLLRELSKIEELKWIRLL 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P ++D LI+ + + ++ Y+ +P+Q S+ +LK MNR T + ++I ++RS+ Sbjct: 233 YAYPDSVTDELIEEIKNNEKIVKYIDIPLQHSSESVLKRMNRGTTRRKIEEVISKLRSI- 291 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P + + + F+VGFPGET+++F + + + + + F YS GT M Q+ + V Sbjct: 292 PGMVMRTTFMVGFPGETEEEFEDLKNFIKEKRFERVGVFTYSREEGTKSYYMKPQIRKKV 351 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL-- 440 K +R L + ++ FN + +G +EVLIE G E G GRS P + +V Sbjct: 352 KLKRQEELMEIQKQISYEFNMSKIGTKLEVLIE--GFEDGVYYGRSYMDAPEIDGLVYVR 409 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466 + K GD + V + D L GE Sbjct: 410 SEKKLFPGDFVTVTVVDAFEYDLVGE 435 >gi|160895345|ref|ZP_02076116.1| hypothetical protein CLOL250_02904 [Clostridium sp. L2-50] gi|156863038|gb|EDO56469.1| hypothetical protein CLOL250_02904 [Clostridium sp. L2-50] Length = 439 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 123/404 (30%), Positives = 226/404 (55%), Gaps = 26/404 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M ++ G V+ + AD+ ++NTC + A +K + R + L Sbjct: 11 TLGCKVNQYETDGMIELLKEAGMTAVSFEEKADVYLINTCSVTNMADKKSRQMIHRAKKL 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 D +V+ AGC QA ++++ I ++++G + +LE V Sbjct: 71 -------NPDAVVIAAGCYVQAAKDKLMEDDRI-SIIIGNNKKKDIVRILEDY-LQAGVT 121 Query: 151 DT---DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D D S E ++E L+I + R A++ IQ+GC++FC++C++PY RG SR + Sbjct: 122 DEGMLDISAEKEYEPLTI-NSTLEHTR---AYVKIQDGCNQFCSYCIIPYVRGRIRSRDI 177 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +++E +L GV EI L G +++++ GK + E +D++ ++S+I+ + R+R + Sbjct: 178 ASIIEEVERLALTGVKEIVLTGIHISSY-GKDKENE-VGLADVIDAISKIESIKRIRLGS 235 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D I D + + P+ HL +QSG + +LK MNR++T EY + + +R Sbjct: 236 LEPSIITDEFIDRIVDNEKVCPHFHLSLQSGCNTVLKRMNRKYTCEEYFEKCEMLRKAFD 295 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 A+++D IVGFPGET+++FR T+D + K+ + FK+SPR GT + M +QV +K Sbjct: 296 RPALTTDVIVGFPGETEEEFRETVDYLTKLNLYEMHIFKFSPRQGTVAAGMKDQVAPEIK 355 Query: 388 AER---LLCLQKKLREQ-QVSFNDACVGQIIEVLIEKHGKEKGK 427 +R LL L ++ ++ + SF G+ ++VL+E+ + +GK Sbjct: 356 NQRSDVLLALSERNKQAYEASFR----GENLDVLVEEKVRREGK 395 >gi|219669148|ref|YP_002459583.1| MiaB-like tRNA modifying enzyme YliG [Desulfitobacterium hafniense DCB-2] gi|219539408|gb|ACL21147.1| MiaB-like tRNA modifying enzyme YliG [Desulfitobacterium hafniense DCB-2] Length = 442 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 140/458 (30%), Positives = 232/458 (50%), Gaps = 33/458 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ V + GC N DS M ++ Y+ VN + AD+I++NTC E A + + Sbjct: 3 KKVAVVTLGCPKNQVDSEIMTGHMMTK-YQIVNEPEQADIIIINTCTFIESAKAESIDMI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L+ S+ KE G +VA GC+AQ G+E+L P ++ ++G + E LE A Sbjct: 62 -----LQMSQYKEEGQCQTLVATGCLAQRYGDELLAEIPELDGIMGTGNVAEILETLEEA 116 Query: 144 RFGK-RVVDTD---YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 K R + + + ++ R+ + Y A++ + EGCD +CT+C++P+ R Sbjct: 117 EKSKVRRISAEAPAFIYDETMPRVRLSPKQY-------AYVKVAEGCDNYCTYCIIPHVR 169 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G SR+ ++ E + GV E+ L+ Q+ + GK GE L+ ++ I+G Sbjct: 170 GHFRSRTQESILREVEAMASEGVKEVLLIAQDTTRY-GKDRYGEY-RLPSLIKEIAGIEG 227 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + +R +P +D LI + + YL LP+Q D++L MNRR T E +I Sbjct: 228 IEWIRLMYCYPELFTDELITVMKETPKVCRYLDLPLQHAHDKVLAEMNRRGTIREAEGLI 287 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R PDI + + I GFPGET+++F+A +D KI + + +F YS TP + Sbjct: 288 HKLRQEIPDIRLRTTMITGFPGETEEEFQAVVDFAKKIRFDRLGAFAYSQEESTPAAQRE 347 Query: 380 EQVDENVKAER---LLCLQKKLR-EQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRS 432 +QV E ++ +R L+ LQ + EQQ + VGQ ++VLIE+ ++ G+ G + Sbjct: 348 DQVPEEIRQQRRDQLMELQHDIAYEQQQRW----VGQTLKVLIEEALPDQRWVGRSEGDA 403 Query: 433 PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 P + VV + IGD + V+IT L GE+V Sbjct: 404 PEIDGVVYVDSPGELEIGDFVLVKITGADSYDLMGEVV 441 >gi|242239728|ref|YP_002987909.1| ribosomal protein S12 methylthiotransferase [Dickeya dadantii Ech703] gi|242131785|gb|ACS86087.1| MiaB-like tRNA modifying enzyme YliG [Dickeya dadantii Ech703] Length = 467 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 142/456 (31%), Positives = 233/456 (51%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY+ V S +DADL+++NTC + A ++ +G N Sbjct: 40 SLGCPKNLVDSERILTELRTEGYQVVPSYNDADLVIVNTCGFIDSAVQESLEAIGEALN- 98 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 E G V+V GC+ E + I P V + GP +Y ++ + V Sbjct: 99 ------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQV-----LSHVHHYVP 144 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 ++ ++F L+ G R A+L I EGCD CTFC++P RG SR + V Sbjct: 145 KPEH---NQFTSLTPAQGVKLTPRHY-AYLKISEGCDHRCTFCIIPSMRGDLDSRPIGAV 200 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 +DEAR+L D GV E+ ++ Q+ +A W G+ + K + DL L+ + Sbjct: 201 LDEARRLKDAGVKELLVISQDTSAYGADVKHRTGFWNGQPV---KTSMVDLCEQLATLGI 257 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + + A G + +PYL +P+Q S +ILK M R + I Sbjct: 258 WVRLHYVYPYPHVDTVIPLMAAGKI---LPYLDIPLQHASPKILKLMKRPGAVERTLERI 314 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R R + P++ + S FIVGFPGET++DF+ +D + + + FK+SP G +++ Sbjct: 315 KRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLTEAQLDRVGCFKFSPVDGAAANDLP 374 Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 + V E VK + R + LQ+++ +++ A VG+ ++VLI++ +E G+ + +P Sbjct: 375 DPVPEAVKEDRYHRFMQLQQEISARRLQ---AKVGRELKVLIDEVDEEGAIGRSMADAPE 431 Query: 435 LQ-SVVLN-SKNHNIGDIIKVRITDVKISTLYGELV 468 + +V LN K N+GD++ VRI L+G L+ Sbjct: 432 IDGAVYLNGEKRVNVGDLVTVRIEHADEYDLWGSLI 467 >gi|82703100|ref|YP_412666.1| hypothetical protein Nmul_A1979 [Nitrosospira multiformis ATCC 25196] gi|123754305|sp|Q2Y7J7|RIMO_NITMU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|82411165|gb|ABB75274.1| SSU ribosomal protein S12P methylthiotransferase [Nitrosospira multiformis ATCC 25196] Length = 448 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 139/452 (30%), Positives = 225/452 (49%), Gaps = 48/452 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS ++ ++GYE ++ +DADL+V+NTC + A E+ Sbjct: 8 TPRIGFV-SLGCPKALVDSEQILTQLRAEGYETSSTYEDADLVVVNTCGFIDSAVEESLD 66 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLE 141 +G + E G V+V GC+ EG ++++++ P V V GP + LPE++ Sbjct: 67 AIGEA-------LAENGK--VIVTGCLGAKEGGDVVKQAHPQVLAVTGP---HALPEVMA 114 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y+ + + + Y A+L I EGC+ CTFC++P RG Sbjct: 115 AVHMHLPQPHDPYTSLIPPQGIKLTPRHY-------AYLKISEGCNHRCTFCIIPSMRGD 167 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +SR + QV++EA L++ GV E+ ++ Q+ +A W+G+ L K +DL Sbjct: 168 LVSRPIHQVMEEAENLVNAGVRELLVISQDTSAYGVDVKYRTGFWQGRPL---KTRMTDL 224 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 SL E+ VRL Y +P + A G + +PYL +P Q S RILK+M R Sbjct: 225 ARSLGELGVWVRLHYVYPYPHVDEVIPLMAEGKI---LPYLDVPFQHASPRILKAMKRPA 281 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + I R R V PDI + S FIVGFPGET+ +F ++ +++ + F YSP Sbjct: 282 NSENNLSRIRRWREVCPDITLRSTFIVGFPGETEAEFEQLLEFLEEAQLDRVGCFAYSPV 341 Query: 371 LGTPGSNMLEQVDENVKAERLLC---LQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425 G + + + V E VK ER C +Q+K+ ++++ +G+ + VLI+ K K Sbjct: 342 EGAAANALPDPVPEEVKEERRACFMAIQEKISAERLARK---IGKRMIVLIDDVSKNKAV 398 Query: 426 GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRI 455 + +P + +V K N+ G+ I+V I Sbjct: 399 ARSTADAPEIDGLVYIGKAKNVKPGEFIEVEI 430 >gi|271500868|ref|YP_003333893.1| MiaB-like tRNA modifying enzyme YliG [Dickeya dadantii Ech586] gi|270344423|gb|ACZ77188.1| MiaB-like tRNA modifying enzyme YliG [Dickeya dadantii Ech586] Length = 467 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 142/456 (31%), Positives = 231/456 (50%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY+ V S +DADL+++NTC + A ++ +G N Sbjct: 40 SLGCPKNLVDSERILTELRTEGYQVVPSYNDADLVIVNTCGFIDSAVQESLEAIGEALN- 98 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 E G V+V GC+ E + I P V + GP +Y ++ + V Sbjct: 99 ------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQV-----LSHVHHYVP 144 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 ++ D F L G R A+L I EGCD CTFC++P RG SR + V Sbjct: 145 KPEH---DPFTSLIPAQGVKLTPRHY-AYLKISEGCDHRCTFCIIPSMRGDLDSRPIGSV 200 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 +DEA++L + GV E+ ++ Q+ +A W G+ + K + L LS + Sbjct: 201 LDEAKRLAEAGVKELLVISQDTSAYGADVKHRTGFWNGQPV---KTSMVSLCEQLSTLGL 257 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P+Q S +ILK M R + I Sbjct: 258 WVRLHYVYPYPHVDDVIPLMAAGKV---LPYLDIPLQHASPKILKLMKRPGAVERTLERI 314 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R R + PD+ + S FIVGFPGET++DF+ +D + + + F+YSP G +++ Sbjct: 315 KRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLQEAQLDRVGCFRYSPVEGAAANDLP 374 Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 +QV E+VK + R + +Q+++ Q++ A VG+ ++VLI++ +E G+ + +P Sbjct: 375 DQVPEDVKEDRYHRFMQVQQQISSQRLL---AKVGRELKVLIDEVDEEGAIGRSMADAPE 431 Query: 435 LQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + +V LN +N +GD++ V+I L+G LV Sbjct: 432 IDGAVYLNGENRVKVGDLVTVKIEHADEYDLWGSLV 467 >gi|154483626|ref|ZP_02026074.1| hypothetical protein EUBVEN_01330 [Eubacterium ventriosum ATCC 27560] gi|149735536|gb|EDM51422.1| hypothetical protein EUBVEN_01330 [Eubacterium ventriosum ATCC 27560] Length = 423 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 138/442 (31%), Positives = 219/442 (49%), Gaps = 39/442 (8%) Query: 44 MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103 M + GYE + AD+I++N+C + A E+ + + K +EG + Sbjct: 1 MSGLLSKAGYEFTDDETQADIIIINSCCFIKDAKEESIETIFEMARYK----EEGQCKAL 56 Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163 V+AGC+AQ EEI P V++ +G + L D + K E L Sbjct: 57 VLAGCLAQRYHEEIKTEIPEVDICIGTTAIDSIVSAL----------DDYFKEHKKKEYL 106 Query: 164 SIVD--GGYNRKR-----GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216 VD N R G A+L I EGCDK CT+C++P RG S + ++DEA+K Sbjct: 107 KDVDFLAAANAPRNLSTMGSYAYLKIAEGCDKHCTYCIIPKVRGNYRSVKMEYLIDEAKK 166 Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276 L + GV E+ L+ Q + GK + G+K + LL L++I G+ +R +P ++ D Sbjct: 167 LAEQGVKELILVAQETTMY-GKDIYGKK-SLHILLKELAKISGIYWIRILYCYPEEIYDE 224 Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336 LI + YL LP+Q SD ILK M RR T + R II ++R PDI + + I Sbjct: 225 LIDVIASEKKICNYLDLPIQHASDTILKKMGRRTTNKDLRDIIGKLRKRIPDIVLRTTLI 284 Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLC 393 GFPGET++D + +D V+++ + + F YS TP +NM Q+DE VK +R ++ Sbjct: 285 TGFPGETEEDHQINLDFVNEMEFERLGVFTYSAEENTPAANMPNQIDEEVKEDRRNDIME 344 Query: 394 LQKKLREQQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQS--VVLNSKNH 445 LQ Q + F+++ +G+ +IE + +GR+ P + S ++ + Sbjct: 345 LQ-----QDIVFDNSEKHIGKTYIAMIEGRISGENAYMGRTYMDVPGIDSNIFIITDEEL 399 Query: 446 NIGDIIKVRITDVKISTLYGEL 467 GD +KV++T + L G+L Sbjct: 400 MTGDFVKVKVTGINDYDLIGQL 421 >gi|251793811|ref|YP_003008543.1| ribosomal protein S12 methylthiotransferase [Aggregatibacter aphrophilus NJ8700] gi|247535210|gb|ACS98456.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700] Length = 443 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 142/464 (30%), Positives = 225/464 (48%), Gaps = 47/464 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P FV S GC N+ DS R+ + GY + S ++ADL+++NTC + A ++ Sbjct: 4 TPNIGFV-SLGCPKNLVDSERILTELRANGYNIIPSYENADLVIVNTCGFIDSAVQESLE 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G ++E G V+V GC+ E ++I + P V V GP +Y + Sbjct: 63 AIGE-------ALEENGK--VIVTGCLGAKE-DQIRQVHPKVLEVSGPHSYETV-----M 107 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K V Y + +E L G + A+L I EGCD CTFC++P RG Sbjct: 108 TQVHKYVPKPAY---NPYESLMPAQGVKLTPKHY-AYLKISEGCDHRCTFCIIPSMRGDL 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTF 247 SR ++QV+DEA++L+D GV E+ ++ Q+ +A W G + K Sbjct: 164 DSRPITQVLDEAKRLVDAGVKELLIVSQDTSAYALDQTKENQNKTVFWNGMPI---KNNL 220 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 L L + VRL Y +P + A G L +PYL +P+Q S +ILK+M Sbjct: 221 ISLCQQLGNLGVWVRLHYVYPYPHVDELIPLMAAGKL---LPYLDIPLQHASPKILKAMK 277 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + I + R + P++ + S FIVGFPGET++DF+ +D + + + FK+ Sbjct: 278 RPGKIDHTLERIKQWREICPELTLRSTFIVGFPGETEEDFQILLDFLKEAQLDRVGCFKF 337 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425 SP G P ++M +QV E VK ER + +E + +G+ + V++++ +E Sbjct: 338 SPVEGAPATDMPDQVPEEVKEERYHRFMQVQQEISSARLQQKIGKTLAVIVDEINEEGII 397 Query: 426 GKLVGRSPWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYG 465 G+ + +P + VV NIGDII V IT+ L+G Sbjct: 398 GRSMADAPEIDGVVYVENQSQSAVNIGDIISVTITEADEYDLWG 441 >gi|78778491|ref|YP_396603.1| hypothetical protein PMT9312_0106 [Prochlorococcus marinus str. MIT 9312] gi|78711990|gb|ABB49167.1| SSU ribosomal protein S12P methylthiotransferase [Prochlorococcus marinus str. MIT 9312] Length = 471 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 136/454 (29%), Positives = 238/454 (52%), Gaps = 42/454 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N+ D+ M+ + GYE ++++DA+++V+NTC E A E+ + +I N Sbjct: 39 GCEKNLVDTQHMQGLLDKDGYEVESNINDANIVVVNTCSFIETAREES---IRKILEYTN 95 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 +G + V+VAGC+AQ EE+L+ P + +VG Y ++ ++L+R G+ V + Sbjct: 96 ----QGKE--VIVAGCMAQHFKEELLKEIPEIKGLVGTGDYQKIAKVLDRVEKGEIVNEV 149 Query: 153 ----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ +++ R VD K A+L I EGC+ C FC++P RG + SR++ Sbjct: 150 SKIPEFIADEEIPRF--VD-----KNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRSRTIE 202 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267 +V EA+ L G+ EI L+ Q + GK + G K + + LL LS++ +R+ Y Sbjct: 203 SIVSEAKSLAKQGIKEIILISQ-ITTNYGKDIYG-KPSLAKLLNELSKVPIPWIRIHY-- 258 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++D +I+A D ++PY LP+Q +LKSMNR A I+++IR P Sbjct: 259 AYPTGLTDEVIRAFKDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIREEIP 318 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + + IVGFPGE + F ++ +D+ + F +SP GT ++ +V V Sbjct: 319 SAVLRTSLIVGFPGEKKEHFEHLLEFLDRHKFDHVGVFIFSPEEGTAAFDLPNKVSPEVA 378 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440 A R ++ +Q+ + + + N + VG +++L+EK + +L+GRS P + V+ Sbjct: 379 AARKDNVISVQQNISKDK---NQSYVGSKMKILVEKIS-DNNELIGRSYNFAPEIDGNVI 434 Query: 441 NSKNHN------IGDIIKVRITDVKISTLYGELV 468 S + N IG ++ I+ LYGE + Sbjct: 435 LSISANNYLRNYIGKFVEANISFADEYDLYGETI 468 >gi|126643044|ref|YP_001086028.1| putative tRNA-i(6)A37 modification enzyme [Acinetobacter baumannii ATCC 17978] gi|126388928|gb|ABO13426.1| putative tRNA-i(6)A37 modification enzyme [Acinetobacter baumannii ATCC 17978] Length = 246 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 99/239 (41%), Positives = 155/239 (64%), Gaps = 2/239 (0%) Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 +N +RG+ +G CTF +LL ++EI G+ RLRYTTSHP + SD LI+ + DL ++ +L Sbjct: 1 MNGYRGETFEGGICTFPELLRLVAEIPGIGRLRYTTSHPLEFSDELIQCYEDLPQMVSHL 60 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 HLPVQSGS+ +LK+M R HT Y I ++R +RPD+ +SSDFI+GFPGETD++F T+ Sbjct: 61 HLPVQSGSNDVLKAMKRNHTIDVYIDKIAKLRKIRPDMHLSSDFIIGFPGETDENFAKTL 120 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411 + + + ++SF YS R GTP S++ + E+VK ERL +Q+ +++ + DA +G Sbjct: 121 QFIKDLDFDHSYSFVYSKRPGTPASDLPDTTPEHVKKERLAQVQQVIKQSSIEKTDAMLG 180 Query: 412 QIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 +I VLIEK ++ LVG + + V +G ++ IT++K ++ +YGEL+ Sbjct: 181 KIERVLIEKVSDQDPNILVGTADNTRLVTFVGDASWVGRFAEIEITEIKTLNLVYGELL 239 >gi|55274301|gb|AAV49043.1| MiaB [Azospirillum lipoferum] Length = 422 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 133/435 (30%), Positives = 219/435 (50%), Gaps = 31/435 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S M + S G + D++++NTC + +A + + ++R Sbjct: 16 TFGCRLNTYESEVMRNHVRSAGLD--------DVVIVNTCAVTSEAERQARQTIRKLR-- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +E D +VV GC AQ + + P V+ V+G Q + PE K +V Sbjct: 66 -----RERPDARIVVTGCAAQIDPQRFAA-MPEVDQVLGNQEKLQ-PESWGLPPAEKVLV 118 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + SV++ L + G +R R AF+ +Q+GCD CTFC++PY RG S + + Sbjct: 119 NDIMSVKETAGHL--IGGFEDRAR---AFVQVQQGCDHRCTFCIIPYGRGPSRSVPIGGI 173 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++ + L+ G E+ L G ++ ++ G L G + L+ + L RLR ++ Sbjct: 174 VEQVQALVKAGYNEVVLSGVDITSY-GPDLPGSPSLGQMVRRLLALVPELPRLRLSSIDC 232 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 +M D L + + LMP+LHL +Q+G D +LK M RRH + R+RS+RPD+ Sbjct: 233 IEMDDDLWRLIENEPRLMPHLHLSLQAGDDMVLKRMKRRHGRADSIAFCKRVRSIRPDVV 292 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 +DFI GFP ET++ F+ TM LV++ G F YSPR GTP + M QVD V+ ER Sbjct: 293 FGADFIAGFPTETEEMFQNTMRLVEECGLTWLHVFPYSPRPGTPAARM-PQVDGAVRKER 351 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450 ++ + + + VG+ VL+EK +GR+ ++ L + G + Sbjct: 352 AARMRAVGKAAEARTLASLVGRTATVLVEKDD------LGRTEHFAAIRLG-RTFAPGSL 404 Query: 451 IKVRITDVKISTLYG 465 + IT ++ L G Sbjct: 405 VPAAITGIESGVLTG 419 >gi|310779080|ref|YP_003967413.1| SSU ribosomal protein S12P methylthiotransferase [Ilyobacter polytropus DSM 2926] gi|309748403|gb|ADO83065.1| SSU ribosomal protein S12P methylthiotransferase [Ilyobacter polytropus DSM 2926] Length = 448 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 133/435 (30%), Positives = 225/435 (51%), Gaps = 23/435 (5%) Query: 31 SYGCQMNVYDSLRMED-MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 S GC N+ DS + M +G+E ++DAD+ ++NTC A E+ + Sbjct: 7 SLGCSKNLVDSENLIGIMVNKKGFEITTDIEDADIALINTCGFIGDAKEESIQTI----- 61 Query: 90 LKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L+ K GG+L ++VAGC+AQ +EI+ P V+ V+G ++ E+++ G++ Sbjct: 62 LEIGEYKRGGNLKKIIVAGCLAQRYAQEIINEMPEVDAVIGTGEIDKIEEVVDEVLAGRK 121 Query: 149 VVDTDYSVEDKFERLSIVDGG-YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 ++ ++ E L+ D TA+L I EGC++ CT+C++P RG SR++ Sbjct: 122 IIKSE-----SLEFLANADTDRILTTHPHTAYLKIAEGCNRRCTYCIIPKLRGDLRSRNI 176 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +V+EA++L GV EI LL Q + G+D +K D++ +LS+++G+ +R Sbjct: 177 EDIVEEAQRLAAGGVREINLLAQETTEY---GIDLYKKKALPDVMKALSKVEGIEWIRTY 233 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 P ++D LI+ + + Y +PVQ SD +L++M R T + + ++ +IR Sbjct: 234 YMFPNSITDELIETMKKEEKVCNYFDVPVQHVSDSVLRNMGRAKTGQQIKDLLYKIRREI 293 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD I + IVGFPGET++DF + V + + FKYS T +M EQ+DE V Sbjct: 294 PDATIRTTVIVGFPGETEEDFIELKEFVKEFKFDYVGVFKYSREEDTVAHDMDEQIDEEV 353 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVVL- 440 K R + L E N +G+ +EV+I+ E +G+ G++ + +L Sbjct: 354 KHRRWMELTNLQSEIAEIKNREFIGKTVEVIIDTVSSESEYMLEGRTRGQALEIDGKILT 413 Query: 441 NSKNHNIGDIIKVRI 455 N G+I+KV+I Sbjct: 414 NDGTAKQGEIVKVKI 428 >gi|20807824|ref|NP_622995.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis MB4] gi|81481565|sp|Q8RA52|RIMO_THETN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|20516384|gb|AAM24599.1| 2-methylthioadenine synthetase [Thermoanaerobacter tengcongensis MB4] Length = 436 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 128/446 (28%), Positives = 231/446 (51%), Gaps = 28/446 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS +M + +GY VN AD+I++NTC E A ++ ++ ++ L Sbjct: 8 SLGCPKNSVDSEKMLALLKEKGYNIVNDEKKADVIIINTCAFIEDAKKESIEYIIQMGEL 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K R+K ++ GC+++ +E+++ P ++ V+G + ++ +++E + GK+V+ Sbjct: 68 KKKRLK-----YLIATGCLSERYNKELIKELPELDAVIGTGDFTQIVDVIEEVKKGKKVL 122 Query: 151 D---TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D ++ R+ Y A+L I EGC C+FC++P RG SR + Sbjct: 123 KYGHPDLLNDEGIPRILTTPPYY-------AYLKIAEGCSNACSFCIIPKLRGKYKSRKM 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++EA++L GV E+ ++ Q+ + G+D +K LL LS+I+ L +R Sbjct: 176 ENIIEEAQELARKGVKELIIIAQDTTKY---GIDLYKKLMLPQLLRELSKIEELKWIRLL 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P ++D LI+ + ++ Y+ +P+Q S+ +LK MNR T + ++I ++RS+ Sbjct: 233 YAYPDSVTDELIEEIKNNQKIVKYIDIPLQHSSESVLKRMNRGTTRRKIEEVISKLRSI- 291 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P + + + F+VGFPGET+++F + + + + + F YS GT M Q+ + V Sbjct: 292 PGMVMRTTFMVGFPGETEEEFEDLKNFIKEKRFERVGVFTYSREEGTKSYYMKPQIRKKV 351 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNS 442 K +R L + ++ FN + +G +EVLIE G E G GRS P + +V Sbjct: 352 KLKRQEELMEIQKQISYEFNMSKIGTKLEVLIE--GFEDGVYYGRSYMDAPEIDGLVYVR 409 Query: 443 KNHNI--GDIIKVRITDVKISTLYGE 466 + + GD + V + D L GE Sbjct: 410 SDKKLFPGDFVTVTVVDAFEYDLVGE 435 >gi|170287904|ref|YP_001738142.1| MiaB-like tRNA modifying enzyme [Thermotoga sp. RQ2] gi|170175407|gb|ACB08459.1| MiaB-like tRNA modifying enzyme [Thermotoga sp. RQ2] Length = 434 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/392 (30%), Positives = 220/392 (56%), Gaps = 21/392 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 ++++GC++N Y+S M + GY V DA ++N+C + ++ +KV + IR Sbjct: 6 IETFGCKVNQYESEYMAEQLEKAGYV-VLPGGDASYYIVNSCAVTKEVEKKVKRLIKSIR 64 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 N +N K +++ GC AQ +E R+ V++++G + + + GK+ Sbjct: 65 N-RNRNAK------IILTGCFAQLSPDEA--RNLPVDMILGIDEKKNIVDHINSLN-GKQ 114 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSL 207 V +E+ V G + + +++ +++GCD CT+C + RG I S+ L Sbjct: 115 QVVVSEPGRPVYEK---VKGSFEDR--TRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPL 169 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +E +++ G EI + G N+ + GK + + ++LL + EI G R+R ++ Sbjct: 170 EIFKEEFAEMVMKGYKEIVITGVNLGKY-GKDMGS---SLAELLRIVEEIPGDYRVRLSS 225 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 + D++D +++A L P+LH+ VQSGSD +LK M R++ ++ +++D++RS+ P Sbjct: 226 INVEDVNDEIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSIDP 285 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D +I++D IVGFPGETD DF+ T++LV+K+ +++ F++SPR GTP S M V E+ K Sbjct: 286 DFSITTDIIVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKK 345 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ERL L++K ++ + + +G+ +VL E Sbjct: 346 KERLDVLKEKAKDVSIRYRKRIIGKERKVLAE 377 >gi|70606747|ref|YP_255617.1| hypothetical protein Saci_0962 [Sulfolobus acidocaldarius DSM 639] gi|68567395|gb|AAY80324.1| universally conserved protein [Sulfolobus acidocaldarius DSM 639] Length = 421 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 142/448 (31%), Positives = 235/448 (52%), Gaps = 34/448 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++++YGC +N DS M + +G+E V+++ DA+++V+NTC +R + E++ Sbjct: 2 RVYIETYGCALNKGDSYIMMTLLRDKGHEIVDNIQDAEILVINTCAVRLETEERMKQ--- 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI+ LK D +VVAGC+A AE ++ +P +V+ GPQ+ ++ +++E ++ Sbjct: 59 RIKELKKY-----NDKRLVVAGCLASAEPAVVVSLAPEASVI-GPQSVQKIVDVVENSK- 111 Query: 146 GKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +R V Y EDK + DG A L I +GC C FC+ R S Sbjct: 112 -QRQV---YLNEDKPLITPKVFDGK-------IAILPIADGCAGDCNFCITKLARRKLRS 160 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 +V+ R + G EI L GQ+ A+ GLD + SDL+ ++E++G +R Sbjct: 161 YPPHLIVESVRDAVRKGAVEIELSGQDTAAY---GLDLGQIKLSDLVRKVTEVEGDFMIR 217 Query: 265 YTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 P RD+ D +I+ + V ++HLPVQSG D +LK MNR++T EY+ ++ Sbjct: 218 IGMMTPEQAMRDI-DGIIEVLRETKVY-KFIHLPVQSGDDNVLKLMNRKYTVDEYKDLVK 275 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR P + I++D I+G PGE ++ FR T++L+ I + + YS R T ++M + Sbjct: 276 EIRKKVPIVNITTDIIIGHPGEDENAFRNTLELMRDIKFERIHLAMYSIRPNTRSASM-K 334 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 QV + VK ER+ K E + + I V+ ++G+ KG ++GR+ VV+ Sbjct: 335 QVPDPVKKERIQIANKLYEELAYEIHSDYLNSIASVITTEYGR-KGSVIGRTLNYIPVVI 393 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +N +G I VRI + L GE + Sbjct: 394 R-QNVELGKRINVRINEASFYDLRGEPI 420 >gi|150020569|ref|YP_001305923.1| MiaB-like tRNA modifying enzyme [Thermosipho melanesiensis BI429] gi|149793090|gb|ABR30538.1| MiaB-like tRNA modifying enzyme [Thermosipho melanesiensis BI429] Length = 429 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 123/395 (31%), Positives = 215/395 (54%), Gaps = 20/395 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + +YGC++N Y+S M + ++GY VN ++D+ V+N+C + +A KV Sbjct: 2 RVSIITYGCKLNQYESELMTERLENEGYVVVNGEVESDIYVINSCVVTNEATRKVKQ--- 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +IR LK K D +VV GC +Q E+L V++++G + R+ ++E Sbjct: 59 QIRRLK----KRFPDSKIVVTGCYSQLFARELLEEE--VDLILGNKEKKRIESIIENVGV 112 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-S 204 VD Y D + + R R AF+ +Q+GC C++C + Y RG+ I S Sbjct: 113 ---FVDRTYWNSDDLDEEYVFSSLSERTR---AFIKVQDGCTNVCSYCTIRYARGMRIRS 166 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + + VV E ++++ EI + G N+ + G D E + +LL ++ +IKG R+R Sbjct: 167 KPIELVVSEILRMVNKDYKEIVITGLNLGKY---GKDKE-TSLLNLLKNVVKIKGDFRIR 222 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ +P D++D LIK + + + +LH+P+QSGS +IL+ M R +T ++ + ++R Sbjct: 223 LSSINPEDINDELIKFIVNEEKVCNHLHVPLQSGSTKILEKMRRNYTQSDFLNLAYKLRK 282 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + +I++D +VGFPGET +DF T+ +V ++ +++ +F+YS R T M +V Sbjct: 283 EDINFSITTDIMVGFPGETQEDFEETLKVVKEVMFSKVHTFRYSDRPNTLAYKMENKVPG 342 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 NVK ER + L K +E + VG+ +V+IE Sbjct: 343 NVKKERAIELDKFSKEVAKEYRKRLVGKSTKVIIE 377 >gi|293391674|ref|ZP_06636008.1| MiaB family RNA modification enzyme [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952208|gb|EFE02327.1| MiaB family RNA modification enzyme [Aggregatibacter actinomycetemcomitans D7S-1] Length = 443 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 145/466 (31%), Positives = 224/466 (48%), Gaps = 51/466 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P FV S GC N+ DS R+ S GY + S ++ADL+++NTC + A ++ Sbjct: 4 TPNIGFV-SLGCPKNLVDSERILTELRSNGYNIIPSYENADLVIVNTCGFIDSAVQESLE 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G ++E G V+V GC+ E ++I + P V + GP +Y + Sbjct: 63 TIGE-------ALEENGK--VIVTGCLGAKE-DQIRQVHPKVLEISGPHSYETV-----M 107 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K V YS +E L + G A+L I EGCD C FC++P RG Sbjct: 108 NQVHKYVPKPQYS---PYESL-VPAQGVKLTPKHYAYLKISEGCDHRCAFCIIPSMRGDL 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTF 247 SR ++QV+DEA++L+D GV E+ ++ Q+ +A W G + K Sbjct: 164 DSRPITQVLDEAKRLVDAGVKELLIVSQDTSAYALDQSKENQNKTVFWNGMPI---KNNL 220 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 L L + VRL Y +P + A G L +PYL +P+Q S +ILK+M Sbjct: 221 ISLCRQLGNLSVWVRLHYVYPYPHVDDLIPLMAEGKL---LPYLDIPLQHASPKILKTMK 277 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + I + R + P++ + S FIVGFPGET++DF+ +D + + FK+ Sbjct: 278 RPGKIDRTLERIQQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKAAQLDRVGCFKF 337 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 SP G P ++M +QV E VK ER + +E + +G+ + V++++ KG Sbjct: 338 SPVEGAPATDMPDQVPEEVKEERFHRFMQVQQEISAARLQQKIGKTLSVIVDEVNM-KG- 395 Query: 428 LVGRS----PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYG 465 ++GRS P + VV NIGD+I V ITD L+G Sbjct: 396 VIGRSMVDAPEIDGVVYVENQSQSAVNIGDVISVTITDADEYDLWG 441 >gi|163814151|ref|ZP_02205543.1| hypothetical protein COPEUT_00305 [Coprococcus eutactus ATCC 27759] gi|158450600|gb|EDP27595.1| hypothetical protein COPEUT_00305 [Coprococcus eutactus ATCC 27759] Length = 437 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 130/453 (28%), Positives = 231/453 (50%), Gaps = 28/453 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84 + + S GC N+ DS M + G+E N +A+ +V+NTC I + E + + + Sbjct: 2 KVLLISLGCDKNLVDSEVMLGLLNKAGHELTNDETEAEAVVINTCAFISDAKEESINTII 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R K R+K+ ++VAGC++Q +EI++ P ++V++G Y ++ E + Sbjct: 62 EMGRLKKTGRLKK-----LIVAGCLSQRYKDEIMKELPEIDVIIGATNYDKIVEAIGTDE 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V D +Y+ + ER+ + A+ I EGC+K CT+C++P+ RG S Sbjct: 117 -DAIVDDINYTPKPVSERIVTTNAS-------MAYFKIAEGCNKLCTYCIIPHIRGRYRS 168 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + +++ A KL +G+ E+ L+ Q + G L G K +LL LS+I+G+ +R Sbjct: 169 IPMDRLLASAEKLAADGIKELVLVAQETTLY-GVDLYGGK-KLPELLTKLSDIEGIEWIR 226 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P +++D LI + + Y+ +P+Q + IL+ M R+ + + ++ ++R+ Sbjct: 227 LLYCYPEEITDELISVMAENPKICHYIDIPIQHSENEILRRMGRKTSREDIVSLVSKLRT 286 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PDIAI + I GFPGET + +D VD+ + + F YSP GTP + +QVD Sbjct: 287 AMPDIAIRTTLISGFPGETQELHDGLVDFVDECEFDRLGVFTYSPEEGTPAAGYEDQVDG 346 Query: 385 NVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437 + A + ++ LQ+++ ++ N +G I VLIE + E VGR+ P + Sbjct: 347 ELAAKWRDEIMELQQEISYEK---NQELIGSIQRVLIEGYLVEDDVYVGRTYRDAPGVDG 403 Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +V S + + G + V+IT+ L G +V Sbjct: 404 IVFVSAPYELMSGSFVDVKITEANEYDLTGVIV 436 >gi|256425530|ref|YP_003126183.1| MiaB-like tRNA modifying enzyme [Chitinophaga pinensis DSM 2588] gi|256040438|gb|ACU63982.1| MiaB-like tRNA modifying enzyme [Chitinophaga pinensis DSM 2588] Length = 425 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 121/397 (30%), Positives = 205/397 (51%), Gaps = 16/397 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G+ + + + AD+ V+NTC + E A ++ + RI+ Sbjct: 11 TLGCKLNFSETSSLSRLLEQDGFVKTDFEEQADVYVINTCSVTENADKECRHLVRRIQ-- 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + + ++V+ GC AQ + +EI V++V+G + + + L+ G Sbjct: 69 -----RRAPESMIVITGCYAQLKPKEIAEIEG-VDLVLGAAEKFNIVDHLKTLTKGDSAK 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +ED ++ Y+ FL +Q+GCD C+FC +P RG S S+++V Sbjct: 123 ICSCDIED----VNTFHASYSVNDRTRTFLKVQDGCDYTCSFCTIPMARGKSRSDSVARV 178 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC---TFSDLLYSLSEIKGLVRLRYTT 267 V+ A L +GV EI L G N+ + GKGL+G K TF +L+ L +++G+ R R ++ Sbjct: 179 VEHAHSLAASGVKEIVLTGINLGDF-GKGLEGGKKREETFFELIQELDKVEGIERYRISS 237 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P +S+ +I+ + MP+ H+P+QSGS+ IL M RR+ Y + I+ P Sbjct: 238 IEPNLLSNEIIEFVANSKRFMPHFHIPLQSGSNDILGLMRRRYRRELYADKVALIKQFMP 297 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 AI D IVGFP E+D F+ T D + + + F YS R T ++ V N++ Sbjct: 298 HCAIGVDVIVGFPSESDAHFQETYDFLHGLDISYLHVFTYSERANTSALDITPVVPVNIR 357 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 ER L+ ++Q FN+ VG+ +VL EKHGK+ Sbjct: 358 NERNKMLRNLSHKKQQYFNEQHVGETRKVLFEKHGKD 394 >gi|238066629|sp|Q31D78|RIMO_PROM9 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO Length = 454 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 136/454 (29%), Positives = 238/454 (52%), Gaps = 42/454 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N+ D+ M+ + GYE ++++DA+++V+NTC E A E+ + +I N Sbjct: 22 GCEKNLVDTQHMQGLLDKDGYEVESNINDANIVVVNTCSFIETAREES---IRKILEYTN 78 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 +G + V+VAGC+AQ EE+L+ P + +VG Y ++ ++L+R G+ V + Sbjct: 79 ----QGKE--VIVAGCMAQHFKEELLKEIPEIKGLVGTGDYQKIAKVLDRVEKGEIVNEV 132 Query: 153 ----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ +++ R VD K A+L I EGC+ C FC++P RG + SR++ Sbjct: 133 SKIPEFIADEEIPRF--VD-----KNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRSRTIE 185 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267 +V EA+ L G+ EI L+ Q + GK + G K + + LL LS++ +R+ Y Sbjct: 186 SIVSEAKSLAKQGIKEIILISQ-ITTNYGKDIYG-KPSLAKLLNELSKVPIPWIRIHY-- 241 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++D +I+A D ++PY LP+Q +LKSMNR A I+++IR P Sbjct: 242 AYPTGLTDEVIRAFKDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIREEIP 301 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + + IVGFPGE + F ++ +D+ + F +SP GT ++ +V V Sbjct: 302 SAVLRTSLIVGFPGEKKEHFEHLLEFLDRHKFDHVGVFIFSPEEGTAAFDLPNKVSPEVA 361 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440 A R ++ +Q+ + + + N + VG +++L+EK + +L+GRS P + V+ Sbjct: 362 AARKDNVISVQQNISKDK---NQSYVGSKMKILVEKIS-DNNELIGRSYNFAPEIDGNVI 417 Query: 441 NSKNHN------IGDIIKVRITDVKISTLYGELV 468 S + N IG ++ I+ LYGE + Sbjct: 418 LSISANNYLRNYIGKFVEANISFADEYDLYGETI 451 >gi|254422541|ref|ZP_05036259.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Synechococcus sp. PCC 7335] gi|196190030|gb|EDX84994.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Synechococcus sp. PCC 7335] Length = 445 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 127/410 (30%), Positives = 210/410 (51%), Gaps = 27/410 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC+ N DS M + GY + + AD +++NTC + A E+ L + Sbjct: 9 ISHLGCEKNRVDSEHMLGLLAKAGYGIGANEEGADYVIVNTCSFIQAAREESVRTLVELA 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 D +V+ GC+AQ E+L P +VG Y+++ +++E+A GKR Sbjct: 69 E---------ADKKIVITGCLAQHFQGELLDEIPEAVALVGTGDYHKIVDVIEQAEAGKR 119 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V E + I D R R + A++ I EGCD C FC++P+ RG + SR Sbjct: 120 VKVVSA------EPIYIADETVPRYRTTSEGVAYVRIAEGCDYKCAFCIIPHLRGKQRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264 S+ +V EA +L D GV E+ L+ Q + G L G K ++L+ +L E+ VR+ Sbjct: 174 SIESIVAEAHQLADQGVKELILISQITTNY-GVDLYG-KPKLAELIRALGEVDVPWVRMH 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y ++P ++ +IKA + +PYL LP+Q +IL++MNR +IID +++ Sbjct: 232 Y--AYPTGLTPAVIKAIQETPNFLPYLDLPLQHSHPQILRAMNRPWQGQVNDEIIDGLKA 289 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+ + + FIVGFPGET++ F V++ + F +S G ++ Q+++ Sbjct: 290 SLPEAVLRTTFIVGFPGETEEQFNHLKSFVERHEFDHVGVFTFSAEEGAVAYDLPNQIEQ 349 Query: 385 NVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRS 432 +V ER + L +Q++SF N A +G ++VLIE+ G+L+GRS Sbjct: 350 SVMDERREAIM--LTQQEISFRRNQAQIGTTVKVLIEQENPSTGELIGRS 397 >gi|229825006|ref|ZP_04451075.1| hypothetical protein GCWU000182_00355 [Abiotrophia defectiva ATCC 49176] gi|229790753|gb|EEP26867.1| hypothetical protein GCWU000182_00355 [Abiotrophia defectiva ATCC 49176] Length = 449 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 125/418 (29%), Positives = 220/418 (52%), Gaps = 22/418 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ +++MF + GYE + AD+ ++NTC + A K L R + L Sbjct: 5 TLGCKVNAYETESIKEMFKNNGYEIKQFNEVADIYIVNTCTVTNIADRKSRQMLHRAKKL 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------RAR 144 + +VV GC QA + L +V+++VG + + L+E + R Sbjct: 65 -------NPEAVVVAVGCYVQAP-QSKLEDDDLVDILVGTRGKSSVLSLVEEYIRSNKTR 116 Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 F V+ + +D V+ G + R A + IQ+GCD+FCT+C++P+ RG Sbjct: 117 DFKHNVIKSGEENKDWAYDSGEVNAGGGKNR---ANIKIQDGCDQFCTYCIIPFVRGRIR 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +V+E +L+ G E+ L G ++ ++ G+ +DGE +LL L++++G R+ Sbjct: 174 SRDMEGIVEETDRLVKAGFREMVLTGIHIGSY-GRDIDGESRML-ELLTELNKVEGDFRI 231 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R + PR +++ ++ L + P+ HL +QSGS +LK MNR + A EY + ++ Sbjct: 232 RLGSVEPRLITEEFLEGLVKLKKVCPHFHLSLQSGSTTVLKRMNRHYGAEEYLNSVKLLK 291 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 I++D IVGFPGETD++F T+ V ++G+ + F YS R GT + M EQ+ Sbjct: 292 KYYDRPGITTDIIVGFPGETDEEFEETVAFVKEVGFLKVHVFPYSKRDGTYAAKMNEQIA 351 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH--GKEKGKLVGRSPWLQSVV 439 +K ER L K E + ++ G + +VL+E+ G+E + + +++ V Sbjct: 352 PEIKKERENILIKVCEEVSEKYLESFNGDMEQVLLEEEIKGREDYVMAHSARYIEVAV 409 >gi|323692752|ref|ZP_08106980.1| hypothetical protein HMPREF9475_01843 [Clostridium symbiosum WAL-14673] gi|323503194|gb|EGB19028.1| hypothetical protein HMPREF9475_01843 [Clostridium symbiosum WAL-14673] Length = 436 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 124/393 (31%), Positives = 212/393 (53%), Gaps = 20/393 (5%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+ + GYE V D AD+ ++NTC + A +K L R + + Sbjct: 10 GCKVNAYETEAMQQLLEDAGYEIVPFKDGADVYIINTCSVTNVADKKSRQMLHRAKKM-- 67 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFGKRVV 150 D +VV GC QA E+ L + V++++G L LLER A R Sbjct: 68 -----NPDSVVVAVGCYVQAAKED-LEKDMAVDLIIGNNKKKDLVGLLERYFADRDDREE 121 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D + ++E L I + + AF+ +Q+GC++FC++C++PYTRG SR++ V Sbjct: 122 VIDIAATGEYEELHIRKIADHTR----AFIKVQDGCNQFCSYCIIPYTRGRVRSRAIGDV 177 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V E L G EI L G +++++ + ++ L+ L +I+G+ R+R + P Sbjct: 178 VKEVEGLAAAGYKEIVLTGIHLSSYGVDFSEEKRENLLSLITCLDKIQGIERIRLGSLEP 237 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 R +++ + A L + P+ HL +QSG + L MNR +TA EY + +R + A Sbjct: 238 RIITEEFVSALAGLKSICPHFHLSLQSGCNATLARMNRHYTAQEYLERCVILRKHFDNPA 297 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV---DENVK 387 I++D IVGFPGET ++F T ++ + + + FKYS R GT + M QV D++V+ Sbjct: 298 ITTDVIVGFPGETVEEFDETKRFLETVRFYEMHIFKYSKREGTRAAVMENQVPEQDKSVR 357 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 ++ LL L+ K+ ++ + ++ +G+ EVL+E+ Sbjct: 358 SDILLTLEHKMSDE---YRESFLGKETEVLLEE 387 >gi|323483779|ref|ZP_08089159.1| hypothetical protein HMPREF9474_00908 [Clostridium symbiosum WAL-14163] gi|323402970|gb|EGA95288.1| hypothetical protein HMPREF9474_00908 [Clostridium symbiosum WAL-14163] Length = 436 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 124/393 (31%), Positives = 212/393 (53%), Gaps = 20/393 (5%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+ + GYE V D AD+ ++NTC + A +K L R + + Sbjct: 10 GCKVNAYETEAMQQLLEDAGYEIVPFKDGADVYIINTCSVTNVADKKSRQMLHRAKKM-- 67 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFGKRVV 150 D +VV GC QA E+ L + V++++G L LLER A R Sbjct: 68 -----NPDSVVVAVGCYVQAAKED-LEKDMAVDLIIGNNKKKDLVGLLERYFADRDDREE 121 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D + ++E L I + + AF+ +Q+GC++FC++C++PYTRG SR++ V Sbjct: 122 VIDIAATGEYEELHIRKIADHTR----AFIKVQDGCNQFCSYCIIPYTRGRVRSRAIGDV 177 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V E L G EI L G +++++ + ++ L+ L +I+G+ R+R + P Sbjct: 178 VKEVEGLAAAGYKEIVLTGIHLSSYGVDFPEEKRENLLSLITCLDKIQGIERIRLGSLEP 237 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 R +++ + A L + P+ HL +QSG + L MNR +TA EY + +R + A Sbjct: 238 RIITEEFVSALAGLKSICPHFHLSLQSGCNATLARMNRHYTAQEYLERCVILRKHFDNPA 297 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV---DENVK 387 I++D IVGFPGET ++F T ++ + + + FKYS R GT + M QV D++V+ Sbjct: 298 ITTDVIVGFPGETVEEFDETKRFLETVRFYEMHIFKYSKREGTRAAVMENQVPEQDKSVR 357 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 ++ LL L+ K+ ++ + ++ +G+ EVL+E+ Sbjct: 358 SDILLTLEHKMSDE---YRESFLGKETEVLLEE 387 >gi|325285087|ref|YP_004260877.1| MiaB-like tRNA modifying enzyme [Cellulophaga lytica DSM 7489] gi|324320541|gb|ADY28006.1| MiaB-like tRNA modifying enzyme [Cellulophaga lytica DSM 7489] Length = 442 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 131/427 (30%), Positives = 213/427 (49%), Gaps = 39/427 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F +G++RV+ + AD+ V+NTC + E A ++ S + + + Sbjct: 9 TLGCKLNFSETSTIARSFVDEGFDRVDFAEAADMYVINTCSVTENADKRFKSIVKQAQ-- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---LERARFGK 147 K+ D V GC AQ + EE L V++V+G +++ + L + FG+ Sbjct: 67 -----KKNPDAFVAAVGCYAQLKPEE-LAAVDGVDLVLGATEKFKITDYINDLSKNDFGE 120 Query: 148 ----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D D+ V G Y AFL +Q+GCD CT+C +P RGI Sbjct: 121 VHSCEIEDADFYV-----------GSYAIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 169 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260 S +L V+ A ++ + EI L G N+ + GKG G K TF DL+ +L + G+ Sbjct: 170 SDTLENVLKNATEISAKNIKEIVLTGVNIGDY-GKGEFGNKKHQHTFLDLVKALDTVDGI 228 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ P + + I + +P+ H+P+QSGSD ILK M RR+ Y + Sbjct: 229 HRLRISSIEPNLLKNETIDFVSKSNSFVPHFHIPLQSGSDTILKLMRRRYLTNLYIDRVA 288 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +I+ V P I D IVGFPGETD+ F T ++++ + F YS R T + M Sbjct: 289 KIKEVMPHACIGVDVIVGFPGETDEHFLETYHFLNELNISYLHVFTYSERDNTVAAEMDN 348 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RS 432 V +NV+A+R L+ +++ +F ++ +G VL E KE G + G ++ Sbjct: 349 VVPKNVRAKRSKMLRGLSVKKRRAFYESQLGSTRTVLFESENKE-GYINGFTENYVKVKA 407 Query: 433 PWLQSVV 439 PW +V Sbjct: 408 PWNPELV 414 >gi|307244373|ref|ZP_07526486.1| ribosomal protein S12 methylthiotransferase RimO [Peptostreptococcus stomatis DSM 17678] gi|306492274|gb|EFM64314.1| ribosomal protein S12 methylthiotransferase RimO [Peptostreptococcus stomatis DSM 17678] Length = 440 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 123/402 (30%), Positives = 210/402 (52%), Gaps = 23/402 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++S GC N+ D+ M + G++ V +DAD++++NTC E A ++ + Sbjct: 2 KIALESLGCSKNLVDAEIMLGLLNKNGHQLVGDYNDADIVIVNTCGFIESAKQESIDSIV 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RA 143 + NLKN EG ++V+GC+AQ +E++ P ++ +VG +Y + ++++ Sbjct: 62 QYANLKN----EGSLSYLLVSGCLAQRYPDELVEEIPEIDAIVGTGSYQNITDVVDGLTE 117 Query: 144 RFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G R++ D +++ + R Y A+L I EGCD CT+C++P RG Sbjct: 118 RDGIRLIEDINFTFNEDLPR-------YVSTPDHLAYLKIGEGCDNHCTYCIIPKLRGKY 170 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR L +++EA+KL + GV E+ ++ Q+ + + G+ + G+ L +R Sbjct: 171 RSRKLENLLEEAKKLKEAGVKELVVIAQDTSVY-GRDIYGKPDLAGLLEGLALLGFDWIR 229 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 Y S+P +S ++ D + Y +P+Q SDRILK MNR+ + E + +D I Sbjct: 230 FMY--SYPEGISQEIVDVVAKYDNICSYFDIPMQHASDRILKLMNRKTSRQELKDKVDMI 287 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RS PD I + FIVGFPGETD+DF +D V ++ + +F YS TP + + Sbjct: 288 RSRVPDATIRTTFIVGFPGETDEDFEDLIDFVKEMKLDRMGAFTYSREEDTPADRLDGHL 347 Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 + VK E RL+ +Q+ + E+ N +G+ +VLIE Sbjct: 348 SQGVKEERLQRLMMVQQAISEE---LNRKKIGKTYKVLIEDQ 386 >gi|89894712|ref|YP_518199.1| hypothetical protein DSY1966 [Desulfitobacterium hafniense Y51] gi|123279971|sp|Q24W37|RIMO_DESHY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|89334160|dbj|BAE83755.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 445 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 139/458 (30%), Positives = 232/458 (50%), Gaps = 33/458 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ V + GC N DS M ++ Y+ VN + AD+I++NTC E A + + Sbjct: 6 KKVAVVTLGCPKNQVDSEIMTGHMMTK-YQIVNEPEQADIIIINTCTFIESAKAESIDMI 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L+ S+ KE G +VA GC+AQ G+E+L P ++ ++G + E LE A Sbjct: 65 -----LQMSQYKEEGQCQTLVATGCLAQRYGDELLAEIPELDGIMGTGNVAEILETLEEA 119 Query: 144 RFGK-RVVDTD---YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 K R + + + ++ R+ + Y A++ + EGCD +CT+C++P+ R Sbjct: 120 EKSKVRRISAEAPAFIYDETMPRVRLSPKQY-------AYVKVAEGCDNYCTYCIIPHVR 172 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G SR+ ++ E + GV E+ L+ Q+ + GK GE L+ ++ I+G Sbjct: 173 GHFRSRTQESILREVEAMASEGVKEVLLIAQDTTRY-GKDRYGEY-RLPSLIKEIARIEG 230 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + +R +P +D LI + + YL LP+Q D++L MNRR T E +I Sbjct: 231 IEWIRLMYCYPELFTDELITVMKETPKVCRYLDLPLQHAHDKVLAEMNRRGTIREAEGLI 290 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++R PDI + + I GFPGET+++F+A ++ KI + + +F YS TP + Sbjct: 291 HKLRQEIPDIRLRTTMITGFPGETEEEFQAVVEFAKKIRFDRLGAFAYSQEESTPAAQRE 350 Query: 380 EQVDENVKAER---LLCLQKKLR-EQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRS 432 +QV E ++ +R L+ LQ + EQQ + VGQ ++VLIE+ ++ G+ G + Sbjct: 351 DQVPEEIRQQRRDQLMELQHDIAYEQQQRW----VGQTLKVLIEEALPDQRWVGRSEGDA 406 Query: 433 PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 P + VV + IGD + V+IT L GE+V Sbjct: 407 PEIDGVVYVDSPGELEIGDFVLVKITRADSYDLMGEVV 444 >gi|253583638|ref|ZP_04860836.1| 2-methylthioadenine synthetase [Fusobacterium varium ATCC 27725] gi|251834210|gb|EES62773.1| 2-methylthioadenine synthetase [Fusobacterium varium ATCC 27725] Length = 445 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 137/444 (30%), Positives = 230/444 (51%), Gaps = 31/444 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +F + S GC N+ DS + ++ G+E + + +AD+I++NTC A ++ + Sbjct: 2 KFALISLGCSKNLVDSENFIGILVNKRGFEVTSELGEADIIIVNTCGFIGDAKKESIETI 61 Query: 85 GRIRNLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + +LK N +K+ ++V GC+AQ EIL+ P V+ V+G ++ +++E Sbjct: 62 LEVSDLKINGNLKK-----IIVTGCLAQRYAGEILKELPEVDAVIGTGEIDKIEKVIEEV 116 Query: 144 RFGKRVVDT---DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 KRVV++ D+ + + +R+ TA+L I EGCD+ CT+C++P RG Sbjct: 117 LADKRVVESTKMDFLADSETDRVLTTASH-------TAYLKIAEGCDRKCTYCIIPQLRG 169 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR++ ++ EA KL+ +GV E+ LL Q + G L EK + + L+ L +I GL Sbjct: 170 NLRSRTIEDILKEANKLVASGVRELNLLAQETTEY-GIDLYKEK-SLARLMKELVKIDGL 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 LR P ++D LI + + Y +PVQ SD IL+ M R + + I++ Sbjct: 228 KWLRTYYMFPDSLTDELIDVMKTEEKICKYFDIPVQHISDNILQQMGRAKSGNHIKGILN 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR PD I + IVGFPGET+++F +++ + FKYS T +M Sbjct: 288 RIRKEIPDAVIRTAVIVGFPGETEENFEELKAFIEEYKFDYVGVFKYSREEDTKAYDMEN 347 Query: 381 QVDENVKAERLL---CLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRS 432 QV E +K +R + LQ K+ E + N +G+I+EV+I+ E +G+ G++ Sbjct: 348 QVPEEIKEKRWIEITNLQTKIAENK---NRNMLGKIVEVMIDGVSTESEYLLEGRTKGQA 404 Query: 433 PWLQSVVL-NSKNHNIGDIIKVRI 455 + VL N G+I+KV++ Sbjct: 405 LEIDGKVLTNDGTAKPGEIVKVKL 428 >gi|126465996|ref|YP_001041105.1| RNA modification protein [Staphylothermus marinus F1] gi|126014819|gb|ABN70197.1| RNA modification enzyme, MiaB family [Staphylothermus marinus F1] Length = 429 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 136/449 (30%), Positives = 247/449 (55%), Gaps = 29/449 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGC +N D M+ + S+G++ V + +AD I++NTC +R K+ + Sbjct: 3 RKIYIETYGCALNRGDEYIMKTVLVSRGHKLVEEITEADTIIINTCTVRYDTELKM---I 59 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 RI+ L RI + +++AGC+A+A+ +I + +P ++V PQ P++ Sbjct: 60 KRIKEL--YRIASEQNKKLIIAGCMAKAQPYKIHKIAPKTSLV-SPQN---APKIW---- 109 Query: 145 FGKRVVDTDYSV-EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 V++D V K ER + G Y K+ A+L IQEGC C+FC+V R + Sbjct: 110 ---IAVESDGQVFLLKGERNRRILGTYVDKQ--IAYLPIQEGCLGNCSFCIVKNARRQLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S ++++ + ++L+ GV EI + GQ+ ++ G L G K +LL L IKG + Sbjct: 165 SYPINKIKNTVKELVGKGVVEIEITGQDTASY-GLDLYG-KQMLPNLLEELDGIKGNFMI 222 Query: 264 RYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R +P ++ D LI+ + + +LH+P+QSGSD++L+ M R++T EYR+I+ Sbjct: 223 RIGMMNPDTLANILDELIEVIKNSAHIYRFLHIPLQSGSDKVLRIMRRKYTVDEYREIVK 282 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R P+I+I++D IVG PGE ++DF T+D++ ++ + + YS R T ++ L Sbjct: 283 ILRKKIPEISIATDIIVGHPGEEEEDFEQTLDIIKELKFERVHPAVYSIRPNTYSAS-LR 341 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 Q+ +VK ER+L L K + + + +G++++ I +H +GR+ V++ Sbjct: 342 QIPTSVKKERMLRLLKIIENVGLEVHRKYLGKVLDTFITEHS---NTWIGRTLNYIPVII 398 Query: 441 NSKNH-NIGDIIKVRITDVKISTLYGELV 468 S+N + G +K++IT+ L G +V Sbjct: 399 FSENTLDFGKHVKIQITNATFYDLRGVIV 427 >gi|319775410|ref|YP_004137898.1| 2-methylthioadenine synthetase [Haemophilus influenzae F3047] gi|329122563|ref|ZP_08251144.1| MiaB family RNA modification enzyme [Haemophilus aegyptius ATCC 11116] gi|317450001|emb|CBY86214.1| 2-methylthioadenine synthetase [Haemophilus influenzae F3047] gi|327473114|gb|EGF18540.1| MiaB family RNA modification enzyme [Haemophilus aegyptius ATCC 11116] Length = 445 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 150/475 (31%), Positives = 243/475 (51%), Gaps = 62/475 (13%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 Q P FV S GC N+ DS R+ + GY V S ++ DL+++NTC + A ++ Sbjct: 2 QNSTPSIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQE 60 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 +G ++E G V+V GC+ E ++I P V V GP +Y + + Sbjct: 61 SLESIGE-------ALEENGR--VIVTGCLGAKE-DQIREVHPKVLEVSGPHSYEAV--M 108 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQEGCDKFCTFC 193 + ++ + Y +S+V K+GV A+L I EGCD CTFC Sbjct: 109 AQVHKYVPKPTHNPY--------ISLVP-----KQGVKLTPKHYAYLKISEGCDHRCTFC 155 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTF- 247 ++P RG SRS++QV+DEA++L + GV E+ ++ Q+ +A+ R +G G K F Sbjct: 156 IIPSMRGDLESRSITQVLDEAKRLAEAGVKELLVVSQDTSAYSMDLKRQEG--GVKTAFW 213 Query: 248 ------SDLLYSLSEIKGL---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 +DL+ ++ L VRL Y +P D LI D L+PYL +P+Q Sbjct: 214 NGMPIKNDLMTLCKQLGKLGIWVRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHA 270 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 S +ILK+M R + + I + R + PD+ + S FIVGFPGET++DF+ +D + + Sbjct: 271 SPKILKAMKRPGSIDRTLERIKQWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQ 330 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + FK+SP G P ++M +QV E+VK ER + +E + +G+ ++VL+ Sbjct: 331 LDRVGCFKFSPVEGAPATDMADQVPEDVKEERFHRFMQLQQEISANRLKQKIGKTLDVLV 390 Query: 419 EKHGKEKGKLVGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 ++ ++ ++GRS P + +V L+ N +GD+IKV IT+ L+G Sbjct: 391 DE--IDEDGIIGRSKADAPEVDGLVYVDNLSRINVKVGDVIKVTITNSDEYDLWG 443 >gi|108760706|ref|YP_629733.1| putative tRNA modifying protein [Myxococcus xanthus DK 1622] gi|123248036|sp|Q1DC90|RIMO_MYXXD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|108464586|gb|ABF89771.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Myxococcus xanthus DK 1622] Length = 476 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 136/460 (29%), Positives = 230/460 (50%), Gaps = 29/460 (6%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 + P+ ++ + GC N DS M +GY V DA +IV+NTC A ++ Sbjct: 2 ETTTPKSLYMMTLGCPKNRVDSEVMLGTLRHRGYTLVQEASDAQVIVVNTCAFIGPAKQE 61 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 + + LK S G +VV GC++Q GEE+ + P V+ +G Y ++ +L Sbjct: 62 SVDSILEMAELKKS----GACKTLVVTGCLSQRYGEELSKEMPEVDHFLGTSAYAQIGDL 117 Query: 140 LERARFGKRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 L ++V+ D DY + R+ N TA+L I EGCD C FC++P Sbjct: 118 LAAEASPRQVIPDPDYIHDANTPRI-------NSMPKYTAYLKISEGCDNACAFCIIPTL 170 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG + SR + +V EA++L D+GV E+ L+ Q++ A+ G L G + DLL +L ++ Sbjct: 171 RGGQRSRPIDDIVAEAKQLADSGVQELNLVAQDLTAY-GHDLPG-RPKLHDLLKALVQVD 228 Query: 259 -GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +RL Y ++PR D LI+ + YL +PVQ SD++L SM R + + Sbjct: 229 VKWIRLHY--AYPRIFPDELIEVMASEPKIARYLDMPVQHVSDKLLLSMKRGRNSEFLKG 286 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++ ++R P + + + IVG PGET++DF + V + + F+YS GT + Sbjct: 287 LLTKLRERVPGLVMRTSLIVGLPGETEEDFEMLKEFVKTQRFERLGVFQYSDEEGTAAYD 346 Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLV 429 + ++V + + R ++ +QK++ +Q N VG+ +EVL+E E G+ Sbjct: 347 LPDKVPQKLIERRWREVMAIQKRINREQ---NKKLVGKRLEVLVEGPAPETEHLLVGRHQ 403 Query: 430 GRSPWLQSVV-LNSKNHNIGDIIKVRITDVKISTLYGELV 468 G++P + +V +N G+I+ V +T+ L +V Sbjct: 404 GQAPDIDGMVYINDGLAYPGEIVTVEVTEAHDYDLVARVV 443 >gi|83589922|ref|YP_429931.1| hypothetical protein Moth_1074 [Moorella thermoacetica ATCC 39073] gi|123752930|sp|Q2RJK1|RIMO_MOOTA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|83572836|gb|ABC19388.1| SSU ribosomal protein S12P methylthiotransferase [Moorella thermoacetica ATCC 39073] Length = 432 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 139/451 (30%), Positives = 223/451 (49%), Gaps = 32/451 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY-SFL 84 R V + GC N +S M + E V+ A+++++NTC A E+ + L Sbjct: 3 RVAVITLGCPKNQVESEYMLGILEKNHLEVVSDPRQAEVVIINTCSFITAAREEALDTIL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + R+ +VAGC+AQ E+ + P +GP RLPE++ R Sbjct: 63 ELARAANHPRL--------IVAGCLAQQYASELWQELPEAAAFIGPGATGRLPEIINRVL 114 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+RV+D E +++ G A+L I EGC+ CT+C +P +G S Sbjct: 115 KGERVLDVPGPEMITGELPRLIEDGKP-----FAYLKIAEGCNNRCTYCTIPSIKGPYRS 169 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVR 262 R L +VV EA L G+ E+ L+ Q+ A+ GLD GE +LL L+ I+G+ Sbjct: 170 RPLEKVVAEAVSLAARGIKELVLVAQDTTAY---GLDCYGEY-RLPELLRRLARIEGIEW 225 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R ++P ++ LI+ ++PYL LP+Q S+ +L+ M R T + I+ + Sbjct: 226 VRLLYAYPTRITPELIEVMATEPGVVPYLDLPLQHASEGVLRRMGRPGTGAAGLRAIESL 285 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P+I I S FIVGFPGE ++DF+ +D + +FK+SP GT +++ QV Sbjct: 286 RRAIPEITIRSTFIVGFPGEEEEDFQILLDFLTDARLDWVGAFKFSPEEGTIAASLPGQV 345 Query: 383 DENVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 E VK ER ++L Q S AC +G+ ++VL K G E G+ + ++P + V Sbjct: 346 PEEVKEERY----QRLMLHQQSITRACNEGWLGREVQVL--KEGPEVGRSMRQAPEVDGV 399 Query: 439 V-LNSKNHNIGDIIKVRITDV-KISTLYGEL 467 V + G ++ V++T + I GE+ Sbjct: 400 VYVKGDPSPAGSMVTVKLTQLYNIYDFLGEI 430 >gi|238065376|sp|A8AIT5|RIMO_CITK8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO Length = 441 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 145/462 (31%), Positives = 236/462 (51%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + E G V+V GC+ A+ ++I P V + GP +Y ++ E + Sbjct: 67 IGEA-------LTENGK--VIVTGCLG-AKVDQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + DL Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVDLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGAVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET+DDF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEDDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ KE G+ Sbjct: 343 GANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDKEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GD+I+V++ + L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDVIRVKVDNADEYDLWGSRV 441 >gi|302392275|ref|YP_003828095.1| 30S ribosomal protein S12P methylthiotransferase [Acetohalobium arabaticum DSM 5501] gi|302204352|gb|ADL13030.1| SSU ribosomal protein S12P methylthiotransferase [Acetohalobium arabaticum DSM 5501] Length = 442 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 137/449 (30%), Positives = 229/449 (51%), Gaps = 30/449 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC N D+ M + G++ VN A+++++NTC A E+ + ++ K Sbjct: 10 GCAKNQVDAEIMLGLIDEAGFKLVNDYSQAEVLIVNTCGFIGDAKEESIDTILQLAEYKK 69 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK---RV 149 K ++V GC+AQ EE+ P ++ ++G + ++ E+++ GK V Sbjct: 70 DNCKS-----LIVTGCLAQRHLEELEAEIPEIDGILGTGNFDKIVEVIKETLSGKSRAEV 124 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + +++ ++ + I + TA+L I EGC+ C++CV+P RG SR + Sbjct: 125 GNPEFNYHNRLPQKRI-------GQDYTAYLKIAEGCNNCCSYCVIPELRGKLHSREIED 177 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 +V EA +L D GV E+ ++ Q++ + G L GE +LL L ++KG+ R ++ Sbjct: 178 IVTEAVELADQGVKEVNIIAQDITKY-GSDLYGEP-RLVELLTELMKVKGIKWFRLLYAY 235 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P D SD LI+ + + Y+ LP+Q D+I M RR T + +I ++R P I Sbjct: 236 PNDFSDELIEVMAKHERICNYIDLPIQHVDDKIRSKMRRRGTKEDILSLIRKLRDRIPGI 295 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA- 388 +I + IVGFPGET+D+F+ +D V + + + F YS GT + M +QV E +K Sbjct: 296 SIRTSLIVGFPGETEDEFKNLLDFVQQARFDRLGVFTYSREEGTAAAEMPDQVAEEIKEE 355 Query: 389 --ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKL-VGRS----PWLQSVV- 439 ER++ LQ+++ + N +G+ +EVLIE+ E KL VGR+ P + +V Sbjct: 356 RYERIMDLQQRI---SLERNQEWIGREVEVLIEEIQQNEDQKLAVGRTQQDAPEIDGLVY 412 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + G+ IKVRI D L GE V Sbjct: 413 VEDVKAEPGEFIKVRIKDAYEYDLIGERV 441 >gi|225011708|ref|ZP_03702146.1| MiaB-like tRNA modifying enzyme [Flavobacteria bacterium MS024-2A] gi|225004211|gb|EEG42183.1| MiaB-like tRNA modifying enzyme [Flavobacteria bacterium MS024-2A] Length = 450 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 135/442 (30%), Positives = 220/442 (49%), Gaps = 34/442 (7%) Query: 19 DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78 DQ I R + GC++N +S + F + Y+RV+ A++ V+NTC + E A + Sbjct: 12 DQSI--PRVAFHTLGCKLNFSESATIARDFDDKNYKRVDFNSPAEVYVINTCSVTENADK 69 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 R++ L + V GC AQ + EEI + V++V+G + L E Sbjct: 70 -------RLKGLVQKALSHNPKGFVAAIGCYAQLQPEEISKLDG-VDLVLGATEKFNLIE 121 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + K+ +S E E + Y+ AFL +Q+GCD CT+C +P Sbjct: 122 YVNDLSKNKQT--EIHSCE--IETANFYKSSYSTSDRTRAFLKVQDGCDYKCTYCTIPQA 177 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLS 255 RG+ S +L +++ +K+ D+G+ EI L G N+ + GKG G K TF +L+ ++ Sbjct: 178 RGVSRSDTLENIINNVKKIGDSGLREIVLTGVNIGDY-GKGEFGNKKHQHTFLELINAID 236 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 +K + R+R ++ P ++D +I + +P+ H+P+QSGSDRILKSM RR+ Y Sbjct: 237 MVKSIDRIRISSIEPNLLNDDIIDFVSGSNRFVPHFHIPLQSGSDRILKSMRRRYLTPLY 296 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 Q + RI+ P+ I D IVG+PGET++DF + + + + F YS R T Sbjct: 297 LQRVARIKEAMPNACIGVDVIVGYPGETEEDFLTSYRFLADLDVSYLHVFTYSERPNTEA 356 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----- 430 + E V V+ +R L+ +++ +F ++ +G+ VL E K KG G Sbjct: 357 LEIKEVVPHAVRNKRSKMLRALSVKKRRAFYESQLGKTYSVLFEGENK-KGYCTGFTENY 415 Query: 431 ---RSPW-------LQSVVLNS 442 R+PW L+ VVL+S Sbjct: 416 VKVRTPWNPELVNTLKEVVLDS 437 >gi|157363921|ref|YP_001470688.1| MiaB-like tRNA modifying enzyme [Thermotoga lettingae TMO] gi|157314525|gb|ABV33624.1| MiaB-like tRNA modifying enzyme [Thermotoga lettingae TMO] Length = 433 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/400 (30%), Positives = 210/400 (52%), Gaps = 21/400 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R +V GC++N Y+S M + G+ + +ADL VLNTC + +AA K + Sbjct: 2 KRAYVTFLGCKVNQYESEYMIEQLEQHGFVMSPNFSEADLCVLNTCAVTSEAARKSRQLI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143 ++R + D ++V GC A + + ++ N+++G L + R Sbjct: 62 RKLR-------RSNPDAVIVATGCYAHIDAQSLIDIGA--NIIIGNNEKRNLVNYIARYF 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 VD ++ E++ R A++ +++GC++FC++C+VP TRG +I Sbjct: 113 ENSSNFVDVSEPDQEVLEKVKSFLSDRTR-----AYIKLEDGCNEFCSYCIVPKTRGKQI 167 Query: 204 -SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLV 261 S+ + V+ E L++NG EI L G N+ + G+ + + S LL +L ++I Sbjct: 168 RSKPVEVVIKEMNDLLNNGYKEIVLTGVNLGKY-GRDIG---TSLSMLLRTLLNQIHDDS 223 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R ++ + +D+SD LI + L P+LH+P+QSGS+RIL+ MNR++T E I ++ Sbjct: 224 RIRLSSINVQDLSDELISLFALSNKLCPHLHIPLQSGSNRILQKMNRKYTVEEALDIFEK 283 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 ++S+ + ++D IVGFPGET DF T +L+ +IG+ + FKYS R GT S + Sbjct: 284 LKSINQYFSFTTDVIVGFPGETIGDFLQTQELIKEIGFVKVHIFKYSSRPGTVASKLGYH 343 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 + + K R L +E + +G+I VL+E + Sbjct: 344 ISNDEKERRAKELAALCKEISEKYRKKSIGKIRHVLVEHN 383 >gi|260913493|ref|ZP_05919971.1| MiaB family RNA modification enzyme [Pasteurella dagmatis ATCC 43325] gi|260632433|gb|EEX50606.1| MiaB family RNA modification enzyme [Pasteurella dagmatis ATCC 43325] Length = 444 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 139/459 (30%), Positives = 228/459 (49%), Gaps = 52/459 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ S GY + S ++ADL+++NTC + A ++ +G Sbjct: 12 SLGCPKNLVDSERILTELRSDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E + I P V V GP +Y + + K V Sbjct: 68 ---ALEENGK--VIVTGCLGAKE-DRIREVHPKVLEVTGPHSYEAV-----MTQVHKYVP 116 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +Y+ + G A+L I EGCD CTFC++P RG SRS++QV Sbjct: 117 KPEYNPYTAL----VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSITQV 172 Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255 +DEA++L+D GV E+ ++ Q+ +A W G + K L L Sbjct: 173 LDEAKRLVDAGVKELLIVSQDTSAYALDQSKEVQNKTVFWNGMPI---KNNLMSLCEQLG 229 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 ++ VRL Y +P + A G L +PYL +P+Q S ++LK+M R + Sbjct: 230 KLGVWVRLHYVYPYPHVDDLIPLMAEGKL---LPYLDIPLQHASPKVLKAMKRPGSIDRT 286 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + I + R + P++ + S FIVGFPGET++DF+ +D + + + FK+SP G Sbjct: 287 LERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAVA 346 Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430 ++M +QV E+VK E R + LQ+++ Q++ VG+I+ V+I++ +E G+ + Sbjct: 347 TDMPDQVPEDVKEERFHRFMQLQQEISAQRLQQK---VGKILSVIIDEIDEEGIIGRSMA 403 Query: 431 RSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 +P + VV ++ + +G II+V IT L+G Sbjct: 404 DAPEIDGVVYIDNVSQIDVKVGQIIQVEITQADEYDLWG 442 >gi|315635047|ref|ZP_07890328.1| RNA modification enzyme [Aggregatibacter segnis ATCC 33393] gi|315476309|gb|EFU67060.1| RNA modification enzyme [Aggregatibacter segnis ATCC 33393] Length = 478 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 139/459 (30%), Positives = 226/459 (49%), Gaps = 52/459 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ S GY + S ++ADL+++NTC + A ++ +G Sbjct: 46 SLGCPKNLVDSERILTELRSNGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 101 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E ++I + P V + GP +Y + + K V Sbjct: 102 ---ALEENGK--VIVTGCLGAKE-DQIRQVHPKVLEISGPHSYETV-----MNQVQKYVP 150 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y + +E L + G A+L I EGCD CTFC++P RG SR ++QV Sbjct: 151 KPAY---NPYESL-LPAQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRPITQV 206 Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255 +DEA++L+D GV E+ ++ Q+ +A W G + K L L Sbjct: 207 LDEAKRLVDAGVKELLIVSQDTSAYALDQTKENQNKTVFWNGMPI---KNNLISLCRQLG 263 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + VRL Y +P + A G L +PYL +P+Q S +ILK+M R Sbjct: 264 NLGIWVRLHYVYPYPHVDELIPLMAEGKL---LPYLDIPLQHASPKILKAMKRPGKIDRT 320 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + I R + P++ + S FIVGFPGET++DF+ +D + + + FK+SP G P Sbjct: 321 LERIKTWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKFSPVEGAPA 380 Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430 ++M +QV E+VK E R + LQ+ + ++ +G+ ++V+++ +E G+ + Sbjct: 381 TDMPDQVPEDVKEERYHRFMQLQQAISAARLQQK---IGKTLKVIVDDINEEGIIGRSMA 437 Query: 431 RSPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYG 465 +P + +V + NIGD+I V ITD L+G Sbjct: 438 DAPEIDGLVYVDNQSQSAVNIGDVISVHITDADEYDLWG 476 >gi|291522742|emb|CBK81035.1| MiaB-like tRNA modifying enzyme [Coprococcus catus GD/7] Length = 454 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 124/418 (29%), Positives = 220/418 (52%), Gaps = 40/418 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M F ++GYE +A + V+NTC + A K + R + Sbjct: 9 TLGCKVNQYETDAMRGSFEAEGYEVKEFSQEASVYVINTCTVTNMADRKSRQMMHRAK-- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGKRV 149 K+ D ++V GC QA E+ L ++++V+G ++ +++E+ + + Sbjct: 67 -----KKNPDGIIVAVGCYVQAAKEQ-LEEDTLIDLVIGNNMKSQVVQIVEQYIQDNRHT 120 Query: 150 VDTDYSVED-----KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 D D V D ++E + I + + A++ IQ+GC++FC++C++PY RG S Sbjct: 121 EDRDAYVADIAHSHEYETMHIETVSEHTR----AYIKIQDGCNQFCSYCIIPYARGRVRS 176 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-------------KCTFSDLL 251 R + ++ E R L NG EI L G +++++ GLD E DL+ Sbjct: 177 RKMEDILQEVRNLTANGYKEIVLTGIHISSY---GLDFEHTADEQEDYVPFKNSALIDLI 233 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +LS I+GL R+R + PR +++ ++ + + P+ HL +QSG D LK MNR +T Sbjct: 234 EALSGIEGLERIRLGSLEPRIITENFVRRLCKVPQICPHFHLSLQSGCDETLKRMNRHYT 293 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 Y + +R A+++D IVGFPGET+++F T ++ + ++ FKYS R Sbjct: 294 TALYLEKCGILRQYFDRPALTTDVIVGFPGETEEEFAQTERFLETVHFSDMHIFKYSKRR 353 Query: 372 GTPGSNMLEQVD---ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 GT ++M Q+D ++V++E+L+ L K++++ F +AC Q VLIE+ + G Sbjct: 354 GTKAADMPNQIDPQLQSVRSEKLIALGKRMKD---DFLEACKDQEQIVLIEEETEIDG 408 >gi|169335621|ref|ZP_02862814.1| hypothetical protein ANASTE_02041 [Anaerofustis stercorihominis DSM 17244] gi|169258359|gb|EDS72325.1| hypothetical protein ANASTE_02041 [Anaerofustis stercorihominis DSM 17244] Length = 448 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 127/419 (30%), Positives = 222/419 (52%), Gaps = 29/419 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ FV + GC N DS + + QGYE V+ +D I++NTC A E+ + + Sbjct: 6 KKVFVLTLGCPKNTVDSENIMYLLSKQGYEIVDDATVSDYIIINTCTFIHDAMEESINSI 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +K R ++ ++V GC+AQ +++ P V+ VG +Y + +++ Sbjct: 66 LEATLVKKDR----SEVKIIVTGCLAQRYSKDLKEEIPEVDAFVGTGEFYNMDKII---- 117 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTR 199 + ++T+ S E + +I + R +T A+L + EGCDK CT+CV+P R Sbjct: 118 ---KSMETEESDEVIVKVDNIDCPIFETDRTLTTPSHFAYLKVSEGCDKHCTYCVIPSIR 174 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G + SR + +V EA++L D GV E+ L+ Q+V + G L GE+ +LL L++I+ Sbjct: 175 GKQRSRKIEDIVSEAKRLADRGVKELILIAQDVGEY-GTDLYGER-KLPELLEELNKIES 232 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + +R +P +SD LI +LD ++ Y+ +P+Q +D ILK M R+ + + +I Sbjct: 233 IHWIRVLYIYPETVSDELIDKFVNLDKVLKYIDMPLQHINDNILKKMGRKTSKEDILTLI 292 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-----DKIGYAQAFSFKYSPRLGTP 374 ++RS I I S FI FPGET+++ + ++ + D++G+ FKYS GTP Sbjct: 293 RKLRSKVNGIKIRSTFITAFPGETEENHKELLEFIKLYQLDRVGF-----FKYSREEGTP 347 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRS 432 +M QV E +K ER + L + ++ + + +EVLIE+ +++ + +GRS Sbjct: 348 AYDMDNQVSEEIKDERYMELMSAQEDVSEELMESYLDKTLEVLIEEKVEDEDNVYIGRS 406 >gi|206890255|ref|YP_002248876.1| hypothetical protein THEYE_A1048 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742193|gb|ACI21250.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 407 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 128/431 (29%), Positives = 226/431 (52%), Gaps = 44/431 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGC++N ++ R+E + ++GY ++ ++A L ++NTC + KA + + + + L Sbjct: 7 TYGCRVNQAEAQRLEKLLTTKGYVVTSNPEEASLWIINTCAVTHKAEVQSRHIINKAKKL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 V GC E+ R N+ V + F K + Sbjct: 67 GKK---------AFVTGCYV-----ELCRIENSENLKVF-------------SNFEKDSI 99 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 ++ +K + L I +R R A + +Q+GC+++C++C+VPY R S + Q+ Sbjct: 100 INNFENLNKSDTLKI-----SRHR---AIIKVQDGCNQYCSYCIVPYLRRKPRSYKIEQI 151 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYS-LSEIKGLVRLRYTTS 268 + E + G+ E+ L G N+ + G+D E K + + LL + L E G R+R ++ Sbjct: 152 MKEIKDYQSIGIKEVVLSGINIGLY---GIDYENKISLNKLLKAILKETSGF-RIRLSSI 207 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 + ++ D + + +LH+P+Q GSDRIL MNRR+ A+++ QII++I + PD Sbjct: 208 EINHIDQEFLEIISD-NRICKHLHIPLQHGSDRILGLMNRRYDAFQFSQIIEKIFKLYPD 266 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I+I +D +VGFP ET+DDF+ T+ L++KIG++ F YS R T S M EQ+ EN+K Sbjct: 267 ISIGTDVMVGFPSETEDDFKRTLQLIEKIGFSYLHVFPYSKRPFTKASEMTEQIPENIKR 326 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 +R CL + + +++ + +G +EV+IE K+ G G S +++K G Sbjct: 327 QRADCLIEVGKRKKLEYIKKFIGSELEVIIE--NKKNGFFSGTSDNYIKCFVDNKKLVAG 384 Query: 449 DIIKVRITDVK 459 +I KV + ++K Sbjct: 385 NIFKVIVNNIK 395 >gi|294085380|ref|YP_003552140.1| MiaB-like tRNA modifying enzyme [Candidatus Puniceispirillum marinum IMCC1322] gi|292664955|gb|ADE40056.1| MiaB-like tRNA modifying enzyme [Candidatus Puniceispirillum marinum IMCC1322] Length = 439 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 134/458 (29%), Positives = 207/458 (45%), Gaps = 45/458 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V+++GC++N+++S + + + G + D I+ NTC + +A ++ + + R Sbjct: 9 VETFGCRLNIWESEVIREKAAAAGVQ--------DAIIFNTCAVTSEAEKQARQAIRKAR 60 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +E D ++V GC AQ E V+VV+G + + Sbjct: 61 -------RENPDSQIIVTGCAAQIAAENWASMDE-VDVVLGNHDKLQAESWRDLGSASAA 112 Query: 149 VVD--TDYSVEDKFERLS----------------IVDGGYNRKRGVTAFLTIQEGCDKFC 190 +D +D + ED E + ++DG R AFL IQ+GCD C Sbjct: 113 CIDDVSDGTREDVREGTAAEVVSDIMQVREMASHMLDGFQEHTR---AFLQIQQGCDHRC 169 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 TFC++PY RG S L Q++D A+ L+D G CEI L G ++ +W G L G + Sbjct: 170 TFCIIPYGRGNNRSAGLHQIIDAAQALVDGGACEIVLTGVDITSW-GSDLAGRPRLGRLV 228 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L EI L RLR ++ P + L+ GD D LMP+ H+ Q G D ILK M RRH Sbjct: 229 RALLREIPALPRLRLSSIDPAEGDAELMAVLGDDDRLMPHFHISAQHGDDLILKRMKRRH 288 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + + D R RPDI +D I GFP E D +A+ +++ + G F YSPR Sbjct: 289 LGRDIIRFCDEARRRRPDIVFGADMIAGFPTEDDAAHQASCEMIARAGITHLHVFPYSPR 348 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 GTP + M ++K R L+ + D +G ++L+E K G+ Sbjct: 349 PGTPAALMPPVAAADIK-NRAASLRAIGSGRLSHLLDNSIGSFDQLLVESGNKGHGRNFS 407 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + L G ++ V+ITD L E V Sbjct: 408 K------IRLQGDYVPAGSLVDVKITDRDSQELIAERV 439 >gi|145637773|ref|ZP_01793423.1| hypothetical protein CGSHiHH_02685 [Haemophilus influenzae PittHH] gi|145269018|gb|EDK08971.1| hypothetical protein CGSHiHH_02685 [Haemophilus influenzae PittHH] Length = 445 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 146/469 (31%), Positives = 240/469 (51%), Gaps = 50/469 (10%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 Q P FV S GC N+ DS R+ + GY V S ++ DL+++NTC + A ++ Sbjct: 2 QNSTPSIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQE 60 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 +G ++E G V+V GC+ E ++I P V V GP +Y + + Sbjct: 61 SLEAIGE-------ALEENGR--VIVTGCLGAKE-DQIREVHPKVLEVSGPHSYETV--M 108 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + ++ + + Y+ + + + Y A+L I EGCD CTFC++P R Sbjct: 109 AQVHKYVSKPTHSPYTSLVPKQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMR 161 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTF------- 247 G SRS++QV+DEA++L + GV E+ ++ Q+ +A+ R +G G K F Sbjct: 162 GDLESRSITQVLDEAKRLAEVGVKELLVVSQDTSAYSMDLKRQEG--GVKTAFWNGMPIK 219 Query: 248 SDLLYSLSEIKGL---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 +DL+ ++ L VRL Y +P D LI D L+PYL +P+Q S +ILK Sbjct: 220 NDLMTLCKQLGKLGIWVRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHASPKILK 276 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 +M R + + I + R + D+ + S FIVGFPGET++DF+ +D + + + Sbjct: 277 AMKRPGSIDRTLERIKQWREICSDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGC 336 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 FK+SP G P ++M +QV E+VK ER + +E + +G+ ++VL+++ +E Sbjct: 337 FKFSPVEGAPATDMADQVPEDVKEERFHRFMQLQQEISANRLKQKIGKTLDVLVDEIDEE 396 Query: 425 KGKLVGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 ++GRS P + +V L+ N +GD+IKV IT+ L+G Sbjct: 397 --GIIGRSKADAPEVDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 443 >gi|303240746|ref|ZP_07327259.1| MiaB-like tRNA modifying enzyme YliG [Acetivibrio cellulolyticus CD2] gi|302591634|gb|EFL61369.1| MiaB-like tRNA modifying enzyme YliG [Acetivibrio cellulolyticus CD2] Length = 452 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 138/459 (30%), Positives = 232/459 (50%), Gaps = 29/459 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + S GC N+ DS M + YE AD+I++NTC E A E+ + + Sbjct: 3 KKIGIVSLGCPKNLVDSEIMLGTLKKKDYEITPDEKHADIIIVNTCGFIESAIEESINAI 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + K + + L++V GC+AQ E+IL+ P V+ VVG Y ++ E++++ Sbjct: 63 LEMVGYKQHKCR-----LLIVTGCLAQRYKEQILKEIPEVDAVVGTGGYGQIAEIIDKLY 117 Query: 145 FG-------KRV-VDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 KR+ +D +Y+VE K ER+ GY A+L I EGCD CT+CV+ Sbjct: 118 EAEAKTPQDKRLFLDFEYNVEYMKEERVLSSKKGY-------AYLKIAEGCDNCCTYCVI 170 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 P RG SRS+ ++ +A L GV E+ L+ Q++ + G+ + EK +L+ + Sbjct: 171 PSLRGPYTSRSMEDIIQDAGHLAKQGVKEVILVAQDITRY-GEDIYNEK-KLVELIRQIC 228 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 I+G+ +R +P ++ + LI ++ YL +P+Q SD+IL +M RR T Sbjct: 229 RIEGIEWIRLLYCYPEEIDENLISEMASNPKILKYLDMPIQHASDKILSAMGRRGTFENL 288 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 ++ +++ PDI I + IVGFPGE + DFR V K + + F YS GT Sbjct: 289 EALLTKLKERIPDIVIRTTLIVGFPGEDEKDFRILYGFVKKHQFDRLGVFPYSKEEGTLA 348 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS--- 432 +M Q+ +VK RL + + +E + N+A + ++ VL+E + GRS Sbjct: 349 FDMKPQIKRSVKESRLSDIMQLQKEIVLEKNNARLNKVYTVLVEGVADDGLFYTGRSYAE 408 Query: 433 -PWLQSVV-LNSKNH-NIGDIIKVRITDVKISTLYGELV 468 P + +++ SK+ G ++V+I ++ L GE+V Sbjct: 409 APEIDNLIYFTSKDPLEFGSFVEVKILNIDEYDLIGEVV 447 >gi|197118030|ref|YP_002138457.1| MiaB-like tRNA-modifying enzyme [Geobacter bemidjiensis Bem] gi|197087390|gb|ACH38661.1| MiaB-like tRNA-modifying enzyme [Geobacter bemidjiensis Bem] Length = 429 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 131/441 (29%), Positives = 210/441 (47%), Gaps = 22/441 (4%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + + GC++N ++S M GY V D AD+ V+N+C + K + + R Sbjct: 7 ITTLGCKINQFESAAMTQALEQNGYSMVPFSDKADIYVINSCTVTAKTDAESRRLIRRAT 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L + VVV GC AQ EE+L+ + VN+++G + LE R Sbjct: 67 RLNP-------EARVVVTGCYAQMNAEELLKLAG-VNLILGNSEKKDIVGFLEGMDDQPR 118 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V +D S+E + + + + AFL +Q GCD C +C+VPY RG S ++ Sbjct: 119 AVVSDISLEKTGDTAPLETFAEHTR----AFLQVQNGCDARCAYCIVPYARGASRSVAVQ 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR-LRYTT 267 + +D G EI L G ++ A+ GLD T L ++ +G+VR LR + Sbjct: 175 EALDGMAAFAAQGFQEIVLTGIHLGAY---GLDLAPATDLLGLMQKAQEQGVVRRLRIGS 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++S LI ++ P+LHLP+QSGSD +L MNR + +R+++ + S P Sbjct: 232 VEPTEVSKQLIDFMARSPMVCPHLHLPLQSGSDSVLSRMNRGYDTALFREVVQSLASAMP 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 ++ I SD I GFPGE+D +F T +D + A F +S R GTP + M QV V Sbjct: 292 EVCIGSDVIAGFPGESDQEFDETYRFIDSLPLAYLHVFPFSQRPGTPAATMTPQVHPKVI 351 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447 ER L+ ++ + VG+ + VL++K K G S +V++ + Sbjct: 352 KERAEALRVLSERKKSDYAAGFVGRELRVLVQKGEK------GLSRNYLTVLIEESKGLV 405 Query: 448 GDIIKVRITDVKISTLYGELV 468 + V++T K L G ++ Sbjct: 406 NREVTVQVTGAKDGELVGRVL 426 >gi|302338031|ref|YP_003803237.1| MiaB-like tRNA modifying enzyme [Spirochaeta smaragdinae DSM 11293] gi|301635216|gb|ADK80643.1| MiaB-like tRNA modifying enzyme [Spirochaeta smaragdinae DSM 11293] Length = 453 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 137/425 (32%), Positives = 211/425 (49%), Gaps = 43/425 (10%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFL 84 FF + GC++N +S + F +G+ V ++ A++ V+N+C + KA +K Sbjct: 5 FF--TLGCKLNQSESEALATAFGRRGFSLVPPSAKGKAEVFVVNSCTVTSKAEQKA---- 58 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP----QTYYRLPELL 140 R + S + +V+V GC AQ + +++ NVVV P + LPE L Sbjct: 59 ---RRMIRSFARNNPLSVVLVTGCYAQMDPDQVAALGE--NVVVLPLSAKASILDLPEFL 113 Query: 141 ERARFGKRVVDT---------------DYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQE 184 E A G ++D D S D+F R I + R RG FL IQ+ Sbjct: 114 ESAAGGYTLLDAVQSFAREKSAAAFAGDPSASDRF-RFEISGAEKSGRSRG---FLKIQD 169 Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244 GCD CT+C V RG +S + S+V+ A L D G EI L G N+ AW+ L Sbjct: 170 GCDNACTYCRVRLARGPSVSLASSEVLRRAAALADEGFGEIVLTGVNLTAWQEGDL---- 225 Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 F+DLL ++ R+R +++ P + + L A V P+ HLPVQSGSD +L Sbjct: 226 -RFADLLALMTSDSRAYRIRLSSTEPDAIDEKLASAASSPRV-RPHFHLPVQSGSDTVLA 283 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 S+ R +TA + + + +R + D +++D IVG PGE+D DF AT+ LV++ G+A + Sbjct: 284 SVGRHYTADDVLRAVALLRKAKEDPFLAADIIVGLPGESDADFEATLSLVERCGFAHIHA 343 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 F +SPR GTP +V E + AER++ + + + SF G E +IE+ + Sbjct: 344 FPFSPRPGTPLYTARGRVPERIAAERMVEIGRLSSQLHASFVARRAGSQEEAVIERLPEN 403 Query: 425 KGKLV 429 LV Sbjct: 404 GQALV 408 >gi|114566788|ref|YP_753942.1| 2-methylthioadenine synthetase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318190|sp|Q0AXI3|RIMO_SYNWW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|114337723|gb|ABI68571.1| 2-methylthioadenine synthetase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 439 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 133/450 (29%), Positives = 231/450 (51%), Gaps = 33/450 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D+ M G+ VNS++ ADL+V+NTC A E+ + L Sbjct: 7 SLGCSKNRVDTEVMMAALKKAGHRIVNSLERADLVVVNTCGFITPAKEESIEAIIETAEL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K K+G ++ AGC++Q G E+L P ++ V G + + ++ R G+RV Sbjct: 67 K----KKGSLQFLIAAGCLSQRYGRELLLEIPELDGVFGISSVSSIAGVVNRIAQGERVC 122 Query: 151 DTDYSVEDKFER----LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 T+ + + FE+ L+ G +A+L I EGC+ C++CV+P RG SR Sbjct: 123 FTEATPTEYFEKGHRILTTPPG--------SAYLKISEGCNNSCSYCVIPSIRGKLRSRQ 174 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265 ++++++EA +L+ G+ E+ L+ Q+ +A+ G D + LL LS++ GL +R Sbjct: 175 INELLNEAAQLLKMGIKELVLVAQDTSAY---GHDISPQSALPTLLRELSKLDGLEWIRL 231 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 HP +SD +I + ++PYL +P+Q S +ILK M+RRH R +I ++R+ Sbjct: 232 MYLHPLYLSDDIIDVVAYENKVLPYLDIPIQHASSKILKLMHRRHDNSHLRTMISKLRAR 291 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P++ + + ++GFPGE + DF + V + + +F + P G+ + + Q+++ Sbjct: 292 IPNLTLRTTVMLGFPGEEEKDFAELYEFVAESQFDWLGAFSFVPEEGSKAALLPNQIEDE 351 Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438 +KAER +L LQ+K+ Q+ N A + +VLI K VGR+ P + + Sbjct: 352 IKAERKDKILRLQQKITRQK---NLARINTQEKVLISSQ-LSKNLFVGRTYFQAPEVDGL 407 Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGE 466 L + + GD + V++ V+ + GE Sbjct: 408 TLVKTDFKLTKGDFVDVQLVGVRNYDMIGE 437 >gi|328955574|ref|YP_004372907.1| SSU ribosomal protein S12P methylthiotransferase [Coriobacterium glomerans PW2] gi|328455898|gb|AEB07092.1| SSU ribosomal protein S12P methylthiotransferase [Coriobacterium glomerans PW2] Length = 448 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 129/452 (28%), Positives = 216/452 (47%), Gaps = 30/452 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N D+ RM + S GY+ S DDA+++++NTC A + + Sbjct: 12 TLGCAKNEVDTDRMRALLLSNGYQEAASSDDANVVIVNTCSFLTSATSESIECTLALAEQ 71 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + I+ D+ +V+ GCV G+++ P V V R+ +L+ +R Sbjct: 72 TTAGIR---DVPLVMCGCVPSRYGDDLPAELPEVAAFVRTDEEDRIVSVLDDLLGVQR-- 126 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 E + + G A++ I +GCD+ C+FCV+P+ RG SR + + Sbjct: 127 ----------ETPAFIPRIKRTVEGAVAYVKISDGCDRLCSFCVIPFIRGRYHSRPAADI 176 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRG-----KGLDGEKCTFSDLLYSLSEIKGL-VRLR 264 + EA +L+ GV EI L+GQ+ W G G G L+ + ++ V +R Sbjct: 177 IAEAVELVSGGVREIVLIGQDTGVWGGDLPAAAGTGGPANLAQLLVALAAALRPAHVWIR 236 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 P M+D LI A D ++PY+ +P+Q S R+L +M R + E + +R+R Sbjct: 237 VLYLQPEGMTDELIAAIRDTPEVLPYIDIPIQHVSARLLAAMRRTGSREELEALFERLRR 296 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P + I S +VGFPGE+D++ ++ + +G+ F YS GT + + EQ+DE Sbjct: 297 TIPHMVIRSTAMVGFPGESDEEAAELLEFMASVGFDYTSVFAYSAEEGTVAARLTEQIDE 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQ------ 436 VK ER E + A VG+ +V+++ E G +L+G + W Q Sbjct: 357 QVKLERQQAAVDLAEELGFAATAAHVGETADVIVDGVEDEDGELELIGHA-WFQAPDLDG 415 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V L++ + ++GDI+KVR TD L G ++ Sbjct: 416 AVHLDATDASVGDILKVRFTDSFCYELVGSVI 447 >gi|254239267|ref|ZP_04932590.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126171198|gb|EAZ56709.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] Length = 440 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 151/472 (31%), Positives = 229/472 (48%), Gaps = 64/472 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G I E G V+V GC+ E I P V V GPQ Y ++ Sbjct: 65 IGE-------AIAENGK--VIVTGCMG-VEEHAIRDVHPSVLAVTGPQQYEQV------- 107 Query: 144 RFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 V V K E +VD G A+L I EGC+ C+FC++P R Sbjct: 108 -----VTAVHEVVPPKTEHNPLVDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMR 162 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR + V+ EA +L+ GV E+ ++ Q+ +A W G+ + K Sbjct: 163 GKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKTDFWNGQPV---KTRMK 219 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 +L +LS + VRL Y +P + A G L+PYL +P Q S ++LK+M R Sbjct: 220 ELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAAGK---LLPYLDIPFQHASPKVLKAMKR 276 Query: 309 RHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 A+E + + I + R + P++ I S FIVGFPGET++DF+ +D + + + F+ Sbjct: 277 --PAFEDKTLARIKQWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQ 334 Query: 367 YSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 YSP G P + + LE V + VK ER + Q+ + ++ F VG+ IEVLI++ Sbjct: 335 YSPVEGAPANELGLEPVPDEVKQDRWERFMAHQQAISAARLQFK---VGKEIEVLIDEVD 391 Query: 423 KEKGKLVGRSPWLQS------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ VGRS W + V ++S GD ++VRITD L+ ELV Sbjct: 392 EQGA--VGRS-WADAPEIDGNVFVDSDELKPGDKVRVRITDADEYDLWAELV 440 >gi|258516263|ref|YP_003192485.1| MiaB-like tRNA modifying enzyme YliG [Desulfotomaculum acetoxidans DSM 771] gi|257779968|gb|ACV63862.1| MiaB-like tRNA modifying enzyme YliG [Desulfotomaculum acetoxidans DSM 771] Length = 446 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 143/455 (31%), Positives = 227/455 (49%), Gaps = 35/455 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M GY N DA+++V+NTC +A E+ + + L Sbjct: 9 SLGCAKNLVDTEIMLGFLKRAGYSITNREKDAEVLVVNTCGFITEAKEEAINTI-----L 63 Query: 91 KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + ++ K GG ++VAGC+AQ E+L+ P ++ ++G + ++ ++ER G+RV Sbjct: 64 EMAQFKLGGKCRALLVAGCLAQRYAPELLKEMPEIDGILGIGSIGQIVSVIERVLAGERV 123 Query: 150 VDT---DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + +Y + L+ TA+L I EGCD C++C +P RG +SR Sbjct: 124 REVGAPEYVFAETARILATPP--------YTAYLKIAEGCDNKCSYCAIPGIRGSFLSRK 175 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + + EA L GV E L+ Q+ + G L G K + S+L+ L+ I + +R Sbjct: 176 IDSIKKEAAALAAQGVREAVLIAQDTTKY-GFDLYG-KFSLSNLIKELTLINDIEWIRLL 233 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI + YL +P+Q SD IL SMNR TA + R++I+++R Sbjct: 234 YCYPSKFTPELIDVLASEKKVCRYLDIPLQHASDSILLSMNRSGTAEQNRRLIEKLRQAV 293 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 IA+ + FIVGFPGET+ DF+ +D + +I + + F YSP TP + + Q+ E++ Sbjct: 294 SGIALRTSFIVGFPGETEADFQTLLDYMQEIRFDRVGIFVYSPEEDTPAAALDNQIAEDI 353 Query: 387 KA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKL--VGRS----PWL 435 K ER + LQ+K+ + N VG ++ VLIE KE+G GRS P + Sbjct: 354 KQDRYERAMLLQQKISLEN---NRRKVGSVVSVLIEGIARNKEEGNFTYTGRSEFDAPGI 410 Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 VL + G+I+ V I L GEL Sbjct: 411 DGKVLVETQEKLSAGEIVPVLIKKAYEYDLIGELT 445 >gi|312793173|ref|YP_004026096.1| miab-like tRNA modifying enzyme ylig [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180313|gb|ADQ40483.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor kristjanssonii 177R1B] Length = 440 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 137/453 (30%), Positives = 228/453 (50%), Gaps = 35/453 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M G+E ++ +DAD+IV+NTC A ++ + + Sbjct: 8 SLGCNKNLVDSEIMMGACVKAGFEITSNAEDADVIVVNTCGFINDAKQESIDTILDMAEY 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 KN + K ++V GC+ Q +EIL + P V+ ++G + +LPE++ GK+ + Sbjct: 68 KNKKCK-----FLIVTGCLTQRYKDEILEQMPEVDAILGVKEMLKLPEVIRGLYEGKQKI 122 Query: 151 D-----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 T + R+ Y A++ I EGC+ C++C +P RG SR Sbjct: 123 KMFDDATSFVYTSSMPRVIATPRYY-------AYIKIAEGCNNRCSYCSIPLIRGKYTSR 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +V EA++L G EI L Q+ + G L G+K LL L +I+ + +R+ Sbjct: 176 PIEDIVKEAKELAKKGYQEIVLTAQDTTKY-GLDLYGKK-MLPSLLEELEKIEKIKWIRF 233 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 S+P D+ + LI+ ++ Y +P+Q +DRILK MNR+ T +++I++IR Sbjct: 234 LYSYPEDVDENLIEVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRS 293 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 ++ I + +VGFP ETD++F + + + +F YS GTP S L QVD+ Sbjct: 294 FDEVVIRTTVLVGFPTETDEEFEELCSFLRWAEFDRLGAFMYSQEEGTPASQ-LPQVDDE 352 Query: 386 VKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWL------ 435 VK E++L +Q+K+ ++Q N VG+ EV+IE K+K +GRS + Sbjct: 353 VKQRRYEKVLNIQRKISKKQ---NKKRVGREYEVVIE--AKDKNNFYIGRSQFEAPEVDG 407 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +V + G +KV+I D L GE++ Sbjct: 408 KVLVFSQNKLTAGQFVKVKILDAFEYDLVGEII 440 >gi|317132913|ref|YP_004092227.1| MiaB-like tRNA modifying enzyme YliG [Ethanoligenens harbinense YUAN-3] gi|315470892|gb|ADU27496.1| MiaB-like tRNA modifying enzyme YliG [Ethanoligenens harbinense YUAN-3] Length = 451 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 136/457 (29%), Positives = 224/457 (49%), Gaps = 28/457 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P R + S GC N D+ M +G+ D AD++++NTC E A ++ Sbjct: 4 TPIRVGMISLGCPKNQVDAEVMLAKLTGEGFTLTPHADAADVVIVNTCGFIEDAKKESIE 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + + LK KEG +VV GC+++ +E+ + P VN ++ R ++ E Sbjct: 64 NILEMAQLK----KEGAIRGLVVTGCLSERYFKEMRQEFPEVNCIL---QVGRAGDIAEA 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRG 200 R D+S + S+ GG + ++L I EGCD CT+C++P RG Sbjct: 117 VRAAADGGTLDFSGRPE----SLAAGGTRVLTTLPFYSYLKIAEGCDNHCTYCIIPKLRG 172 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR L +V EA +L GV E+TL+ Q+ + G L G K +LL I GL Sbjct: 173 RYRSRPLDDLVREAEQLAARGVRELTLVAQDTTRY-GTDLSGGKRMLPELLRRFCRIDGL 231 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R +P + D LI + ++PYL +P+Q S R++++MNRR + E ++ Sbjct: 232 HWVRLLYCYPEALDDELIDTIASEEKVVPYLDMPIQHVSPRVVRAMNRRMSKAEITALVC 291 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R+ PD+ + + IVGFPGET+++F V + + + +F YS GTP + + Sbjct: 292 KLRARIPDVTLRTTLIVGFPGETEEEFAELAAFVRETRFERLGAFAYSQEEGTPAAELPG 351 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIEKHGKEKGKLVGRS---- 432 Q+DE+VK R Q+++ E+Q+ DA +G +EVL+E + + G GRS Sbjct: 352 QIDEDVKKRR----QEQIMEEQMLVADANNQRRLGSTVEVLVEGYDRYAGCWFGRSAAEA 407 Query: 433 PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467 P + + + K + G + V + +V L G L Sbjct: 408 PEIDGKIFIRSQKTNRPGTFVSVHLDEVCGDDLIGSL 444 >gi|312878039|ref|ZP_07737977.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor lactoaceticus 6A] gi|311795191|gb|EFR11582.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor lactoaceticus 6A] Length = 440 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 137/453 (30%), Positives = 228/453 (50%), Gaps = 35/453 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M G+E ++ +DAD+IV+NTC A ++ + + Sbjct: 8 SLGCNKNLVDSEIMMGACVKAGFEITSNAEDADVIVVNTCGFINDAKQESIDTILDMAEY 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 KN + K ++V GC+ Q +EIL + P V+ ++G + +LPE++ GK+ + Sbjct: 68 KNKKCK-----FLIVTGCLTQRYKDEILEQMPEVDAILGVKEMLKLPEVIRGLYEGKQKI 122 Query: 151 D-----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 T + R+ Y A++ I EGC+ C++C +P RG SR Sbjct: 123 KMFDDATSFVYTSSMPRVIATPRYY-------AYIKIAEGCNNRCSYCSIPLIRGKYTSR 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +V EA +L + G EI L Q+ + G L G+K LL L +I+ + +R+ Sbjct: 176 PIEDIVKEAEELAEKGYQEIVLTAQDTTKY-GLDLYGKK-MLPSLLEELEKIEKIKWIRF 233 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 S+P D+ + LI+ ++ Y +P+Q +DRILK MNR+ T +++I++IR Sbjct: 234 LYSYPEDVDENLIEVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRS 293 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 ++ I + +VGFP ETD++F + + + +F YS GTP S L QVD+ Sbjct: 294 FDEVVIRTTVLVGFPTETDEEFEELCSFLRWAEFDRLGAFMYSQEEGTPASQ-LPQVDDE 352 Query: 386 VKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWL------ 435 VK E++L +Q+K+ ++Q N VG+ EV+IE K+K +GRS + Sbjct: 353 VKQRRYEKVLNIQRKISKKQ---NKKRVGREYEVVIE--AKDKNNFYIGRSQFEAPEVDG 407 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +V + G +KV+I D L GE++ Sbjct: 408 KVLVFSQNKLTAGQFVKVKILDAFEYDLVGEII 440 >gi|301065032|ref|ZP_07205377.1| MiaB-like protein [delta proteobacterium NaphS2] gi|300440881|gb|EFK05301.1| MiaB-like protein [delta proteobacterium NaphS2] Length = 437 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 133/446 (29%), Positives = 216/446 (48%), Gaps = 19/446 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F V + GC++N Y+S ME+ G+ R A ++V+NTC + +KAA + Sbjct: 2 ETFKVITLGCKVNQYESAFMEESLSKAGWHRTTDESAAHVLVVNTCVVTQKAAHQS---- 57 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERA 143 R I+E V GC AQA EE L + ++ + +P LL E Sbjct: 58 ---RQAIRKAIRENPKAKVAAVGCYAQAFPEE-LETIDGIALIANNRIKAEIPRLLTELP 113 Query: 144 RFG-KRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +F KR + E F+ L I + G R A+L IQ+GC FCT+C+VPYTRG Sbjct: 114 KFSQKRAFLPPFETETPFDALKICNFPGRTR-----AYLKIQDGCRSFCTYCIVPYTRGP 168 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S + +V+D G E+ L G ++ + G L G K + LL + E + Sbjct: 169 YRSLAPEKVLDALEGFARKGYREVVLTGIHLGKY-GVDLPG-KTDLTGLLKMVGEKSLPL 226 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R ++ P+++ LI+ P+ H+P+QSG D+ILK MNR + ++ +II+ Sbjct: 227 RVRLSSMEPQELPTELIEMAASESWFCPHFHIPLQSGDDQILKKMNRHYNTKDFAKIIET 286 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I + P AI D + GFPGE + + L++ + + F +SPR GTP + Sbjct: 287 IHTAMPLGAIGVDVMAGFPGEDLAAHKNAVSLLEALPVSYLHVFPFSPRKGTPAWHYKNS 346 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVL 440 VD + ER L+ RE+++ F C+G +VL+E + ++K + G + V Sbjct: 347 VDIEIVKERARELRILGREKRMLFYKKCLGHHFDVLVEGAYARDKDLMTGAAENYLPFVF 406 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466 + G I+++R + + + GE Sbjct: 407 LRDDSLKGRIVRMRAVRISENRVLGE 432 >gi|154501155|ref|ZP_02039193.1| hypothetical protein BACCAP_04845 [Bacteroides capillosus ATCC 29799] gi|150269847|gb|EDM97382.1| hypothetical protein BACCAP_04845 [Bacteroides capillosus ATCC 29799] Length = 434 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 130/450 (28%), Positives = 223/450 (49%), Gaps = 33/450 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ + + GC++N Y++ +E +G+ V D+AD ++NTC + + K + + Sbjct: 2 RYAIYTLGCKVNQYETQALETELLRRGHTLVPFEDEADAYIINTCTVTAVSDRKSRNAIR 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--- 142 R + K +V V GC AQ +++ V++V G +ER Sbjct: 62 RAK-------KRNPAAVVAVCGCYAQTAPDDVAALG--VDLVSGTGDRLGFLNEVERLSG 112 Query: 143 -----ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 A ++ + FE+L G R R A L +++GC FCT+C++PY Sbjct: 113 LVRAEAELVPEMLVDNIMTHRSFEQLP-AGGLEGRTR---AMLKVEDGCVNFCTYCIIPY 168 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG S +LS V++A+KL +G EI L G +++W + DG + DL+ + Sbjct: 169 ARGPVRSLALSAAVEQAKKLAQDGYREIVLTGIEISSWGHEFKDG--TSLIDLVEGICHA 226 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +R+R + PR +++ + L L P+ HL +QSG D +LK MNR++ +Y + Sbjct: 227 VPDLRVRLGSLEPRTITEDFCRRAAALPNLCPHFHLSMQSGCDAVLKRMNRKYDTAQYYE 286 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + +R AI++D IVGFPGE++++F +T++ V+K ++ F YS R GTP + Sbjct: 287 SVTLLRGFFDRPAITTDLIVGFPGESEEEFTSTLEFVEKCAFSSMHIFPYSRRTGTPAAK 346 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 M +QV VK ER + ++ + VG + VL E+ ++ G G +P Sbjct: 347 MSDQVPNAVKEERAALAGALAARLKAAYLEQWVGTSLPVLFEE--EKNGLWRGHAPNYVE 404 Query: 438 VVLNSKN-HNIGDIIKVRITDVKISTLYGE 466 V+ + + HN+ I DVKI+ L+G+ Sbjct: 405 VMAHGEGLHNV-------IRDVKITGLHGD 427 >gi|328953239|ref|YP_004370573.1| Ribosomal protein S12 methylthiotransferase rimO [Desulfobacca acetoxidans DSM 11109] gi|328453563|gb|AEB09392.1| Ribosomal protein S12 methylthiotransferase rimO [Desulfobacca acetoxidans DSM 11109] Length = 473 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 135/454 (29%), Positives = 222/454 (48%), Gaps = 25/454 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + S GC N D+ M + + GY+ V+ +ADL+++NTC A ++ + Sbjct: 13 RRLYPVSLGCAKNRVDTEIMLALLEAAGYQVVSRPQEADLMLVNTCGFITPACQEAIDTI 72 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + K + ++ +VV GC+ Q +E+L P V++ +G + R+ E++ Sbjct: 73 LELAAYKQDQPEKQ----LVVTGCLVQRYQQELLDLLPEVDIFLGVNDFPRIVEVIR--- 125 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 R +D ++ ++ + +A+L I EGC CT+C +P RG S Sbjct: 126 --ARSTTGRLHCQDGWQDYELIWPRHLTTPFYSAYLKIAEGCSHHCTYCTIPQIRGPYRS 183 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263 R LS +V EA++L GV E+ L+ Q+ A+ G+D G + +LL L+ I L + Sbjct: 184 RPLSTLVAEAKQLAAQGVRELNLVAQDTTAY---GVDQGGRLLLPELLRQLAGIAALQWI 240 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R HP ++ L++ D + PY LPVQ SDR+L M R + + + + RIR Sbjct: 241 RLLYGHPARVTPELLRVMADHPQICPYFDLPVQHVSDRLLHRMGRGYRQKDLWETLARIR 300 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV- 382 ++ P + + IVGFPGE + DF + ++ + F Y P GTP + M E V Sbjct: 301 TIIPAATLRTSVIVGFPGEREQDFAELCQVTAQMEFDHLGVFAYQPEEGTPAAKMAESVT 360 Query: 383 --DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWL 435 + N +A RL LQ +L +++ G I VLIE H +E +G+L G++P Sbjct: 361 PREANRRARRLRSLQARLNRKKLR---RLKGTIQPVLIEGHSEETELLLRGRLAGQAPEA 417 Query: 436 Q-SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V +N+ +G + VRIT L GE+V Sbjct: 418 DGQVYINAGWAELGRLTPVRITKTYTYDLLGEVV 451 >gi|313904016|ref|ZP_07837396.1| MiaB-like tRNA modifying enzyme YliG [Eubacterium cellulosolvens 6] gi|313471165|gb|EFR66487.1| MiaB-like tRNA modifying enzyme YliG [Eubacterium cellulosolvens 6] Length = 453 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 133/452 (29%), Positives = 226/452 (50%), Gaps = 32/452 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M +GYE + +A++I++NTC + A E+ + + L Sbjct: 7 SLGCDKNLVDAEHMLGSLAGRGYEMTDDETEAEIIIVNTCCFIDSAKEESVNTI-----L 61 Query: 91 KNSRIK-EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 +R K EG ++V GCVA+ EE+L P V+ +VG +Y ++ E + + G R Sbjct: 62 DMARYKTEGKCHTLIVTGCVAERYKEEVLEEIPEVDAIVGTNSYNKIEEAILKVGEGARP 121 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTA----FLTIQEGCDKFCTFCVVPYTRGIEISR 205 E L+ + G R+ T +L I EGCD+ CT+C +P RG S Sbjct: 122 A--------ILEPLNYIPKGEKRRVMATGGFFEYLKIAEGCDRHCTYCAIPDMRGPYRSV 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +++EAR L +GV E+ L+ Q + G L EK LL L +I+ + +R Sbjct: 174 PMEDLLEEARGLAADGVKELILVAQETTLY-GTDLYNEK-RLHILLKELCKIEDIHWIRV 231 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P ++ LI+ + + Y+ +P+Q +D ILK M R+ + + ++++ +R Sbjct: 232 LYCYPEEIYPELIQTMKEEPKICHYMDIPIQHANDEILKKMGRKTSRADLVRVVNTLRQE 291 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDIAI + I GFPGET+ F D + ++ + + F YS GT + M Q+DE Sbjct: 292 IPDIAIRTTLITGFPGETEAQFEDVCDFIREMKFDRLGVFTYSCEEGTAAARMDGQIDEE 351 Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438 V +R L+ +Q+++ ++ + +G +EV IE + ++ VGR+ P + + Sbjct: 352 VMKDRQDALMTIQQEISSER---GQSLIGSTLEVFIEGYMSQENAYVGRTYADIPNVDGM 408 Query: 439 VL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 + S+ N GD +KV +T L G+LV Sbjct: 409 IFIQTSETLNSGDFVKVLVTAAMEYDLIGQLV 440 >gi|163788919|ref|ZP_02183364.1| possible 2-methylthioadenine synthetase [Flavobacteriales bacterium ALC-1] gi|159876156|gb|EDP70215.1| possible 2-methylthioadenine synthetase [Flavobacteriales bacterium ALC-1] Length = 442 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 128/427 (29%), Positives = 215/427 (50%), Gaps = 39/427 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F +G+ RV+ ++AD+ V+NTC + E A + R + + Sbjct: 10 TLGCKLNFSETSTIARSFKDEGFARVDFKENADIYVINTCSVTENADK-------RFKTI 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGK 147 K D V GC AQ + EE+ + V++V+G +++ + L + FG+ Sbjct: 63 VKQAQKVNPDAFVAAIGCYAQLKPEELADVNG-VDLVLGATEKFKITDYLNDLTKNDFGE 121 Query: 148 ----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D D+ V G Y+ AFL +Q+GCD CT+C +P RGI Sbjct: 122 VHSCEIEDADFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 170 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260 S +++ V++ A+++ + G+ EI L G N+ + GKG G K TF DL+ L +++G+ Sbjct: 171 SDTMTNVLNNAKEISEQGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLDLVTELDKVEGI 229 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ P + + I +P+ H+P+QSGS+ ILK M RR+ Y + Sbjct: 230 ERLRISSIEPNLLKNETIDLVSKSRAFVPHFHVPLQSGSNDILKKMKRRYMKELYVDRVS 289 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +I+ V P I D IVGFPGETD+ F T + + ++ + F YS R T + M Sbjct: 290 KIKEVMPHACIGVDVIVGFPGETDEHFLETYNFLKELDISYLHVFTYSERDNTEAAEMDG 349 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RS 432 V +NV+A+R L+ +++ +F + + VL E KE G + G ++ Sbjct: 350 VVSKNVRAKRSKMLRGLSAKKRRAFYEKQLNTDRTVLFEGENKE-GYIHGFTENYVKVKA 408 Query: 433 PWLQSVV 439 PW +V Sbjct: 409 PWNPELV 415 >gi|15643593|ref|NP_228639.1| hypothetical protein TM0830 [Thermotoga maritima MSB8] gi|14916854|sp|Q9WZT7|Y830_THEMA RecName: Full=Putative methylthiotransferase TM_0830 gi|4981362|gb|AAD35912.1|AE001750_6 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 434 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 119/393 (30%), Positives = 221/393 (56%), Gaps = 23/393 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 ++++GC++N Y+S M + GY V +A ++N+C + ++ +KV + IR Sbjct: 6 IETFGCKVNQYESEYMAEQLEKAGYV-VLPDGNAAYYIVNSCAVTKEVEKKVKRLIKSIR 64 Query: 89 NL-KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 N KN++I ++ GC AQ +E ++ V++V+G + + + GK Sbjct: 65 NRNKNAKI--------ILTGCFAQLSPDEA--KNLPVDMVLGIDEKKHIVDHINSLN-GK 113 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206 + V +E+ V G + + +++ +++GCD CT+C + RG I S+ Sbjct: 114 QQVVVSEPGRPVYEK---VKGSFEDR--TRSYIKVEDGCDNTCTYCAIRLARGTRIRSKP 168 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L +E +++ G EI + G N+ + GK + + ++LL + ++ G R+R + Sbjct: 169 LEIFKEEFAEMVMKGYKEIVITGVNLGKY-GKDMGS---SLAELLKVIEKVPGDYRVRLS 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + + D++D ++KA L P+LH+ VQSGSD +LK M R++ ++ +++D++RS+ Sbjct: 225 SINVEDVNDEIVKAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSID 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD +I++D IVGFPGETD DF+ T++LV+K+ +++ F++SPR GTP S M V E+ Sbjct: 285 PDFSITTDIIVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESK 344 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 K ERL L++K ++ + + +G+ +VL E Sbjct: 345 KKERLDVLKEKAKDVSIRYRKRIIGKERKVLAE 377 >gi|160880431|ref|YP_001559399.1| MiaB-like tRNA modifying enzyme [Clostridium phytofermentans ISDg] gi|160429097|gb|ABX42660.1| MiaB-like tRNA modifying enzyme [Clostridium phytofermentans ISDg] Length = 466 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 128/441 (29%), Positives = 227/441 (51%), Gaps = 30/441 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+ +F G V+ + +D+ V+NTC + A K L + + Sbjct: 27 TLGCKVNSYETEAMQQLFLDAGATIVDFEELSDIYVVNTCTVTNIADRKSRQMLHKAK-- 84 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARFGK 147 K + +V+ GC QA E +L V++V+G + L++ + Sbjct: 85 -----KNNPNSVVIAVGCYVQAAKEALLE-DDTVDLVIGNNKKNEIVSLVDEYYDNQSNY 138 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 V+D D E +E L+I + A++ IQ+GC++FC++C++PY RG SRS Sbjct: 139 AVIDIDNDFE--YEELAIAAVTEKTR----AYIKIQDGCNQFCSYCIIPYARGRIRSRSE 192 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK----------CTFSDLLYSLSEI 257 ++ E +L++NG EI L G +++++ + L ++ L+ SLSEI Sbjct: 193 EEIKKEVMRLVENGYQEIVLTGIHLSSYGLETLSVKEQAALLPENGISPLMTLILSLSEI 252 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +GL R+R ++ PR +++ +K L P+ HL +QSG L MNR++T +Y + Sbjct: 253 EGLNRIRLSSLEPRIITEEFVKTLAR-SKLCPHFHLSLQSGCKETLVRMNRKYTPDDYYK 311 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + IR+ + AI++D IVGFPGET+++F T ++K+ ++Q FKYS R GT Sbjct: 312 RCEIIRTYYENPAITTDVIVGFPGETEEEFEDTKAFLEKVQFSQMHIFKYSKRKGTKAEA 371 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG--KEKGKLVGRSPWL 435 M QV E +K++R L ++ + + D+ +G VL E+ ++ ++G + Sbjct: 372 MPNQVPEQIKSKRSENLFDSEKKMRAKYLDSFIGINEIVLTEEETMIEDTLYMIGHTTRY 431 Query: 436 QSVVLNSKNHNIGDIIKVRIT 456 V + N +++ VRIT Sbjct: 432 VKVAIPVSNLKSNELVNVRIT 452 >gi|291166092|gb|EFE28138.1| 2-methylthioadenine synthetase [Filifactor alocis ATCC 35896] Length = 445 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 109/369 (29%), Positives = 198/369 (53%), Gaps = 18/369 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F+ + GC N DS M + S+G + +++A++ ++NTC + A E+ + Sbjct: 7 KVFITTMGCAKNWVDSENMLGIMESEGLTQTLDVEEAEIGIVNTCGFIDSAKEESIQEI- 65 Query: 86 RIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 L ++ KE G+L ++V GC+AQ +E++ P ++ ++G ++ ++ ++ Sbjct: 66 ----LSLAQYKEIGNLKKLIVTGCLAQRYSKELMEEIPEIDFILGTTSFPQIMSAIKMTE 121 Query: 145 FGKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 GKR + D + ++ + ER + + Y A+L I EGCD CT+C++P RG Sbjct: 122 LGKRDSLLEDINLNLSENMERTQLTEEYY-------AYLKIAEGCDNLCTYCIIPKLRGK 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 SR +V+E++KL ++GV E+ ++ Q+ + G L G+K + +LL L +KGL Sbjct: 175 YRSRQKEDIVEESKKLAESGVKELIVIAQDTTKY-GIDLYGKK-SLGELLKELDNVKGLH 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R S+P D+ D I A + ++PY +P+Q SD +LK MNR + E +++ Sbjct: 233 WIRVLYSYPEDIDDEFILAVKNSKKIIPYFDMPIQHCSDTVLKRMNRHTSKQELYDKVNQ 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ P+ + + I GFPGET ++F V ++ + + F +S GTP + M +Q Sbjct: 293 IRTQIPNAVLRTTLITGFPGETREEFEELKQFVQEVKFDRLGVFAFSQEEGTPAAKMKDQ 352 Query: 382 VDENVKAER 390 ++E K R Sbjct: 353 IEEQEKENR 361 >gi|221194798|ref|ZP_03567855.1| conserved hypothetical protein [Atopobium rimae ATCC 49626] gi|221185702|gb|EEE18092.1| conserved hypothetical protein [Atopobium rimae ATCC 49626] Length = 460 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 132/471 (28%), Positives = 220/471 (46%), Gaps = 31/471 (6%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 MVS I + + GC N D+ RM + F+QG+ V++ ++AD++++NTC Sbjct: 1 MVSPSNTPTIDKKNILFVTLGCAKNEVDTDRMRALLFAQGFSEVDTPNEADIVLINTCSF 60 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 A E+ +I + ++ L +V+ GCV G ++ P V V Sbjct: 61 LASATEESIETTLQIAEGASHGVR---SLPIVMCGCVPSRYGSKLPEELPEVAAFVRADE 117 Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 + E VV +E + + G G +A++ I +GCD+FC F Sbjct: 118 EDGIVE----------VVSEVLGIERTPQSVIAAHGMLRTVEGASAYVKISDGCDRFCAF 167 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---GKGLDGEKCTFSD 249 C +PY RG SR +++ E L++ GV EI L+GQ+ W + GE T + Sbjct: 168 CAIPYIRGHYQSRPADEILSEVSSLMEGGVREIILIGQDTGIWGNDIAETNTGEVPTLAW 227 Query: 250 LLYSLSEI----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 L+ ++++ G VR+ Y P M+D LI D +PY+ +P+Q S+R+L Sbjct: 228 LMRQVAQVVRPYNGWVRVLYL--QPEGMTDELISTIRDTPECLPYIDIPIQHCSERVLAR 285 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R +A E R + DR+R P + + + + GFPGET+++ D + + + F Sbjct: 286 MGRSGSAPELRSLFDRLRREIPGMVLRTTGMCGFPGETEEESDELYDFIQEQEFDYTSVF 345 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGK 423 YSP GT G++M QV + +K ER L + E + VG+ EV+I+ + Sbjct: 346 TYSPEEGTAGASMPNQVPDEIKMERTQRLIDLVEELGFAGTARHVGERCEVIIDGIEDTD 405 Query: 424 EKGKLVGRSPWLQSVVLNSKNH------NIGDIIKVRITDVKISTLYGELV 468 E +L+G + W Q+ + H +GDI+ + D + GE+V Sbjct: 406 EGFELIGHA-WFQAPDCDGAVHIANGEARVGDIVLCDLVDSFCYEIIGEIV 455 >gi|307130740|ref|YP_003882756.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Dickeya dadantii 3937] gi|306528269|gb|ADM98199.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Dickeya dadantii 3937] Length = 467 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 140/453 (30%), Positives = 222/453 (49%), Gaps = 40/453 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY+ V S +DADL+++NTC + A ++ +G N Sbjct: 40 SLGCPKNLVDSERILTELRTEGYQVVPSYNDADLVIVNTCGFIDSAVQESLEAIGEALN- 98 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 E G V+V GC+ A+ +I P V + GP +Y ++ + Sbjct: 99 ------ENGK--VIVTGCLG-AKDNQIREVHPNVLEITGPHSYEQVLNHVHHY------- 142 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L G R A+L I EGCD CTFC++P RG SR + V Sbjct: 143 -VPKPEHDPFTSLIPAQGVKLTPRHY-AYLKISEGCDHRCTFCIIPSMRGDLDSRPIGSV 200 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 +DEA++L D GV E+ ++ Q+ +A W G+ + K + L LS + Sbjct: 201 LDEAKRLADAGVKELLVISQDTSAYGADVKNRTGFWNGQPV---KTSMVSLCEQLSTLGL 257 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P+Q S +ILK M R + I Sbjct: 258 WVRLHYVYPYPHVDDVIPLMAAGKV---LPYLDIPLQHASPKILKLMKRPGAVERTLERI 314 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R R + P++ + S FIVGFPGET++DF+ +D + + + F+YSP G +++ Sbjct: 315 KRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLQEAQLDRVGCFRYSPVEGAAANDLP 374 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ- 436 +QV E VK ER + ++ A VG+ ++VLI++ +E G+ + +P + Sbjct: 375 DQVPEEVKEERYHRFMQIQQQISSQRLQAKVGRELKVLIDEVDEEGAIGRSMADAPEIDG 434 Query: 437 SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 +V LN +N +GD++ V+I L+G LV Sbjct: 435 AVYLNGENRVKVGDLVTVKIEHADEYDLWGSLV 467 >gi|311695350|gb|ADP98223.1| MiaB-like tRNA modifying enzyme YliG [marine bacterium HP15] Length = 448 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 143/455 (31%), Positives = 222/455 (48%), Gaps = 43/455 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ GY+ V S DDAD++V+NTC + A ++ +G Sbjct: 20 SLGCPKALVDSERILTQLRLDGYDVVPSYDDADIVVVNTCGFIDAAKQESLDAIGEA--- 76 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I E G V+V GC+ E ++I P V V GP Y + + + K+ Sbjct: 77 ----ISENGK--VIVTGCMG-VEADKIRDTHPGVLAVSGPHAYEEVVGAVHQFVPQKKQ- 128 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L G R A+L I EGC+ CTFC++P RG +SR + V Sbjct: 129 ------HDPFTDLVPPQGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDV 181 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 +DEA++L+D GV E+ ++ Q+ +A W+G+ L K L +L E+ Sbjct: 182 MDEAQRLVDAGVKELLVISQDTSAYGVDTKYRTGFWQGRPL---KTKMQSLCEALGEMGV 238 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S ++LK+M R + + I Sbjct: 239 WVRLHYVYPYPHVDDIIPLMAEGKI---LPYLDIPFQHASPKVLKAMKRPAHDSKTLERI 295 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D +D+ + +FKYSP G + + Sbjct: 296 RKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLDEAQLDRVGAFKYSPVEGAKANELE 355 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435 V E VK ERL +K + + A +GQ I+VLI++ +E +GRS P + Sbjct: 356 GAVSEEVKEERLARFMEKQAKISAARLQAKIGQTIDVLIDEVDEEGA--IGRSKADAPEI 413 Query: 436 QSVV-LNSKNHNI-GDIIKVRITDVKISTLYGELV 468 +V LN + + G+I++ + L+ LV Sbjct: 414 DGMVYLNDETDLVPGEIVQAVVEHADEHDLWARLV 448 >gi|148241399|ref|YP_001226556.1| 2-methylthioadenine synthetase [Synechococcus sp. RCC307] gi|238066614|sp|A5GQP4|RIMO_SYNR3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|147849709|emb|CAK27203.1| 2-methylthioadenine synthetase [Synechococcus sp. RCC307] Length = 487 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 136/452 (30%), Positives = 223/452 (49%), Gaps = 38/452 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91 GC+ N D+ M + GY DA ++V+NTC I++ AE V + + K Sbjct: 46 GCEKNRVDTEHMLGLLAQAGYGVSADEADAQVVVVNTCSFIQDARAESVRTLVDLAEQGK 105 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV-- 149 +V+AGC+AQ EE+L P +VG Y + E+LE+ G+RV Sbjct: 106 Q----------IVIAGCLAQHFQEELLESLPEARAIVGTGDYQHIVEVLEQVEAGERVNR 155 Query: 150 ---VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V T + ++ R Y A+L + EGCD C FC++P RG + SR Sbjct: 156 VSQVPT-FVADENLPR-------YRTTSEAVAYLKVAEGCDYRCAFCIIPKLRGDQRSRP 207 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRY 265 + +V EA++L GV E+ L+ Q + G L G K ++LL +L E++ +R+ Y Sbjct: 208 IESIVAEAQQLAAQGVKELILISQITTNY-GLDLYG-KPQLAELLRALGEVEIPWIRVHY 265 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P ++ ++ A+ ++ ++PYL LP+Q +L++MNR Q++ RIR Sbjct: 266 --AYPTGLTPEVLAAYREVPNVLPYLDLPLQHSHPEVLRAMNRPWQEGVNGQLLQRIREQ 323 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD + + FIVG+PGET++ F ++ V + + F +SP GTP +++ V Sbjct: 324 LPDAVLRTTFIVGYPGETEEQFEHLLEFVQEQRFDHVGVFCFSPEDGTPAADLPNAVPAE 383 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV-- 439 V R L + + N A VG+I++VL+E+ G+L+GR +P + V Sbjct: 384 VAEARRGRLMEAQQAISAERNGAWVGRIVDVLVEQENPSSGELIGRCLRFAPDVDGEVRI 443 Query: 440 ---LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + G ++ VRIT I L GE+V Sbjct: 444 RAGSHGAAASAGTMVPVRITAADIYDLEGEVV 475 >gi|291543604|emb|CBL16713.1| MiaB-like tRNA modifying enzyme [Ruminococcus sp. 18P13] Length = 440 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 135/447 (30%), Positives = 225/447 (50%), Gaps = 30/447 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S+GC++N Y++ + M +G + V +DADLI++N+C + + KV L +R Sbjct: 7 SFGCKVNQYETNALRGMLSREGIQPVEQPEDADLILVNSCTVTASSDRKVRHALRSLR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT----YYRLPELLERARFG 146 SR +V+ GC+ QA + + P +++ G + R+ +L+E A Sbjct: 65 --SRCPAAK---IVLTGCLPQAH-PDAAQLCPEADLITGTKDRAALIQRIRQLMESAVPW 118 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V T Y+ + +E L + +R R AF+ IQ+GC++FC++C++PY RG S+ Sbjct: 119 DGV--TPYTPGEGYELLPPAENA-DRTR---AFIKIQDGCNQFCSYCIIPYARGRCRSKP 172 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + EA ++ G E L+G N+ A+ G G+ D + + G+ R+R Sbjct: 173 REALAQEAAQMAQAGCREAVLIGINL-AFYGMEWQGD---LGDAVDICCAVPGIDRVRLG 228 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P +SD L++ P HL +QSG DR L++MNR +T EY + RIR + Sbjct: 229 SLEPEKLSDDLLRRLAAHPQFCPQFHLSLQSGCDRTLRAMNRHYTTAEYADLAARIRRIF 288 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD A+++D +VGFPGET+ DF +++ V ++G+A+ F YSPR GT + M EQ+ Sbjct: 289 PDAALTTDVMVGFPGETEADFACSLEFVREMGFAKVHVFPYSPREGTVAARMPEQIPSPE 348 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 K R + + + +F + VG+++ VL E+ + G +P V +++K Sbjct: 349 KRRRAALMGETAAACRRAFLRSQVGKVMPVLFERSA-DPAWHRGYTPNYTPVKISAKKGE 407 Query: 447 -------IGDIIKVRITDVKISTLYGE 466 IIK D I TL E Sbjct: 408 KSLRKSVFRVIIKSSEPDCCIGTLLPE 434 >gi|290968719|ref|ZP_06560257.1| ribosomal protein S12 methylthiotransferase RimO [Megasphaera genomosp. type_1 str. 28L] gi|290781372|gb|EFD93962.1| ribosomal protein S12 methylthiotransferase RimO [Megasphaera genomosp. type_1 str. 28L] Length = 443 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 138/452 (30%), Positives = 230/452 (50%), Gaps = 32/452 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 S GC N+ D+ M + + + AD+I++NTC EKA E +++ L Sbjct: 8 SLGCSKNLIDTEVMLGILREKHMTITEDLAQADIIIVNTCTFIEKAKRESIHTIL----- 62 Query: 90 LKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 + ++ KE G +++V GC++Q EE+L+ P ++ ++G ++ R+ E + R GKR Sbjct: 63 -QAAQYKEQGSCKMLLVTGCLSQQYKEELLQEMPEIDALLGTGSWDRVWEAITTVRQGKR 121 Query: 149 V--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V +D + D+ R Y +A++ I EGC+ CTFC++P RG SRS Sbjct: 122 VCFMDNVSHLYDQHTRRLRTTPSY------SAYVKIGEGCNNGCTFCIIPKVRGTLYSRS 175 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + +V+E +L GV EI L+ Q+ ++ G L G + LL L +++G+ +R Sbjct: 176 MDSIVEEVTQLAHEGVKEINLIAQDTTSY-GVDLAG-RSLLPALLRRLVKVEGIAWIRLF 233 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P SD L+ D + PY+ LP+Q S +L+ MNR+ + + R++++++ Sbjct: 234 YLYPHFFSDELMNLIIQEDKICPYVDLPLQHISQSVLQRMNRKDSEADVRRLVEKLCRGE 293 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 + + S FIVGFPGET+++F + + + F YS GTP ++M QV E V Sbjct: 294 RKLTLRSTFIVGFPGETEEEFNTLAEFLKTSAFDDVGVFTYSQEEGTPAASMKAQVPEAV 353 Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGR----SPWLQS 437 K ER L+ +Q ++ E + N A G +L+EK E G + VGR +P + Sbjct: 354 KEERYHTLMAIQAQVSEVR---NRALEGTEHVMLVEKIETENGVRQAVGRIEAQAPEVDG 410 Query: 438 VVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467 V N+ GD+++VRI L EL Sbjct: 411 VTYLENATTVMPGDMVRVRIVQGFAYDLVAEL 442 >gi|320173893|gb|EFW49071.1| hypothetical protein SDB_03579 [Shigella dysenteriae CDC 74-1112] Length = 441 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 146/462 (31%), Positives = 237/462 (51%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ +E G+ Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQ-SVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + +P + +V LN + N N GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVNPGDILRVKVEHADEYDLWGSRV 441 >gi|312134799|ref|YP_004002137.1| miab-like tRNA modifying enzyme ylig [Caldicellulosiruptor owensensis OL] gi|311774850|gb|ADQ04337.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor owensensis OL] Length = 440 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 133/453 (29%), Positives = 230/453 (50%), Gaps = 35/453 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M G+E ++ DAD+IV+NTC A ++ + + Sbjct: 8 SLGCNKNLVDSEIMMGACVKAGFEITSNAKDADVIVVNTCGFINDAKQESIDTILDMAEY 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 KN + K ++V GC+ Q +EIL + P ++ ++G + +LPE+++ GK+ + Sbjct: 68 KNKKCK-----FLIVTGCLTQRYKDEILEQMPEIDAILGVKEMLKLPEVIKDLYEGKQKI 122 Query: 151 D-----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + R+ Y A++ I EGC+ C++C +P+ RG SR Sbjct: 123 KVFNDASSFVYSSSMPRVIATPSYY-------AYIKIAEGCNNRCSYCSIPFIRGKYTSR 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +V EA++L + G EI L Q+ + G L G+K LL L I+ + +R+ Sbjct: 176 PIEDIVKEAKELAEKGYQEIILTAQDTTKY-GIDLYGKK-MLPALLEELEGIEKIKWIRF 233 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 S+P D+ + LI ++ Y +P+Q +DRILK MNR+ T +++I++IR Sbjct: 234 LYSYPEDLDENLIDVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRS 293 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 ++ I + +VGFP ETD++F + + + +F YS GTP L QVDE+ Sbjct: 294 FDEVVIRTTVLVGFPTETDEEFEELCSFLKWAEFDRLGAFMYSQEEGTPAFK-LPQVDED 352 Query: 386 VKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWL------ 435 +K E++L +Q+K+ ++Q N VG+ EV+IE K++ +GRS + Sbjct: 353 IKQRRYEKVLNIQRKISKKQ---NRKRVGKEYEVVIE--AKDRNNFYIGRSQFEAPEVDG 407 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +V + K G+ +KV++ D L GE++ Sbjct: 408 KVLVFSQKKLIAGEFVKVKVLDAFEYDLVGEII 440 >gi|170072335|ref|XP_001870154.1| CDK5 regulatory subunit-associated protein 1 [Culex quinquefasciatus] gi|167868595|gb|EDS31978.1| CDK5 regulatory subunit-associated protein 1 [Culex quinquefasciatus] Length = 446 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 128/420 (30%), Positives = 205/420 (48%), Gaps = 69/420 (16%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN D+ + + Y+R S+ DAD+++L TC IR+ A V++ L +R +K R Sbjct: 1 MNTNDTEIVWSILKGHEYQRTGSIKDADVVLLMTCAIRDGAESTVWNRLKHVRLMKERRE 60 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 EG RA G++ ++ S Sbjct: 61 SEG-------------------------------------------RALQGQKAINVLLS 77 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 +++ + + V +RK TA+++I GCD C++C+VP+TRG E SR ++ + +EA Sbjct: 78 LDETYADVMPVK--LDRK-SRTAYVSIMRGCDNMCSYCIVPFTRGKERSRPVASIREEAL 134 Query: 216 KLIDNGVCEITLLGQNVNAWR--GKGLDGEKCT-------------------FSDLLYSL 254 L G+ EITLLGQNVN++R DGEK F++LL L Sbjct: 135 HLEAKGIKEITLLGQNVNSYRDLSTESDGEKQASVLAPGFKTVYKTKVGGRRFAELLTEL 194 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 +E +R+R+T+ HP+D +++ + LHLP QSGS +L+ M R ++ Sbjct: 195 AETVPEMRIRFTSPHPKDFPREVLETIARYPNICKNLHLPAQSGSSTVLERMRRGYSREA 254 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 Y ++D +R++ P++ +SSDFI GF GE+D +F T+ L++++GY AF F YS R T Sbjct: 255 YLNLVDEVRTIVPNVTLSSDFICGFCGESDAEFTETLSLIEQVGYHTAFLFAYSMREKTT 314 Query: 375 GSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432 + V ++VK +RL + K R N VG+ +L+E K L GR+ Sbjct: 315 AHRRFSDDVPDSVKQQRLRDMIKVFRVGAERLNAQFVGREELILVEGASKRSPNDLAGRN 374 >gi|254501602|ref|ZP_05113753.1| MiaB-like tRNA modifying enzyme [Labrenzia alexandrii DFL-11] gi|222437673|gb|EEE44352.1| MiaB-like tRNA modifying enzyme [Labrenzia alexandrii DFL-11] Length = 422 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 217/443 (48%), Gaps = 36/443 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M+ + G + D I++NTC + +A + + + + Sbjct: 5 VVTFGCRLNSYESEVMKREAEAAGLK--------DAILINTCAVTNEAVRQARQAVRKAK 56 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-- 146 ++ D V+V GC AQ E + V++V+G + A FG Sbjct: 57 -------RDNPDAKVIVTGCAAQTETDTFSEMDE-VDLVLGNTEKLERKSYADVAAFGIS 108 Query: 147 ---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K V+ SVE+ L +DG R R AF+ +Q GCD CTFC++PY RG Sbjct: 109 ETEKVRVNDIMSVEETAGHL--IDGLTGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSR 163 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S + V+D+ ++L+DNG EI L G ++ ++ G L GE + L + L RL Sbjct: 164 SVPMGVVIDQIKRLVDNGYNEIVLTGVDITSY-GADLPGEPKLGTLTAKILKMVPDLKRL 222 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ + + L++ D LMP+ HL +Q+G D ILK M RRH + + + +R Sbjct: 223 RLSSIDSIEADEDLMQVIADDHRLMPHFHLSLQAGDDMILKRMKRRHLRGDTIKFCEDVR 282 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +RPD+ +D I GFP ET++ F ++ +VD+ G F +SPR GTP + M Q+D Sbjct: 283 KMRPDVVFGADIIAGFPTETEEMFLNSLKIVDECGLTHLHVFPFSPRPGTPAARM-PQLD 341 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 ++ ER L++K + VG++ VLIEK G +GR+ V L Sbjct: 342 RSIIKERGARLREKGAQVLAQHLAMEVGKVRPVLIEKEG------LGRTEQFTQVEL--A 393 Query: 444 NHNIGDIIKVRITDVKISTLYGE 466 GDI++ RI L GE Sbjct: 394 GGTAGDIVETRIIGHTGRHLLGE 416 >gi|323473663|gb|ADX84269.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus REY15A] gi|323476314|gb|ADX81552.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus HVE10/4] Length = 421 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 140/447 (31%), Positives = 233/447 (52%), Gaps = 36/447 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +V++YGC +N D+ M + S+GY V + ++AD+I+LNTC +R + E++ Sbjct: 2 KTIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERM---- 57 Query: 85 GRIRNLKNSRIKEGGDLL--VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 RIKE L +VVAGC++ AE +L +P +++ GPQ+ R+ +++ + Sbjct: 58 -------KQRIKELNTLSKKLVVAGCMSSAEPATVLSIAPNASLI-GPQSVERIIDVI-K 108 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K V++ D R I ++ G A + + +GC C+FC+ R Sbjct: 109 SEERKIVLEGD--------RALITPRTFD---GKIAIIPVADGCAGNCSFCITKLARRKL 157 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 S L ++V+ AR + G EI L GQ+ A+ GLD G + D++ ++EI G Sbjct: 158 RSYPLREIVNAARDAVKAGAKEIELTGQDTAAY---GLDLGGSISLVDVVNKVTEIDGDF 214 Query: 262 RLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 +R P + D LI+ + V ++HLPVQSG DR+LK MNR++T EY+++ Sbjct: 215 MIRIGMMTPEQAMRIIDNLIEVMRNPKVY-KFIHLPVQSGDDRVLKLMNRKYTIDEYKEL 273 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + IRS P I++D I+G PGE +D F T+ L+ ++ + + YS R T ++M Sbjct: 274 VSEIRSKIPFANITTDIIIGHPGEDEDAFNNTLLLMKELRFERIHLAMYSIRPNTRSASM 333 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 QV ++VK +R+ K + +S + VG V+ + G+ KG +VGR V Sbjct: 334 -PQVPDSVKKKRIQIANKLYEDIALSIHLEYVGSTSRVITTELGR-KGSVVGRLMNYIPV 391 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465 V+ S+N +G V+IT+ L G Sbjct: 392 VIKSENVELGKWYNVKITEASFYDLRG 418 >gi|168704786|ref|ZP_02737063.1| hypothetical protein GobsU_34937 [Gemmata obscuriglobus UQM 2246] Length = 467 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 130/437 (29%), Positives = 220/437 (50%), Gaps = 24/437 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS RM GY AD++++NTC E A ++ + + + L Sbjct: 28 SLGCPKNTVDSERMLGKLAQDGYSLQPDAAGADVVIVNTCGFIEPARQESLAVIREMLEL 87 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA---RFGK 147 K K G VVVAGC+A+ + + +L + P V+ +VG + +++RA R + Sbjct: 88 K----KAGKVGSVVVAGCMAERQKDVLLEQVPEVDQIVGVFGREEIAAVVDRAVSQRDEQ 143 Query: 148 RVVDTDYSVE--DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 R + V + RL I + A+L + EGCD+ CT+C +P RG +++ Sbjct: 144 RSLFRPAPVRALEDTARLRITPRHF-------AYLKVSEGCDRLCTYCAIPKMRGKHVTK 196 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +V+ EAR+L +GV E+ ++ Q+ + G L G + ++LL L +++ + +R Sbjct: 197 PIEEVIREARELAADGVRELIIVAQDTTYY-GMDLYG-RTRLAELLRELDKVENIEWIRT 254 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P +SD LI+ ++PYL +P+Q SDR+LK M RR +++ R+R Sbjct: 255 LYAYPEHISDELIETFAGSKKIIPYLDMPLQHISDRVLKRMIRRVDRAATEKLLYRLREK 314 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD+AI + FI GFPGETD +F D V + + + F YS GTP + + E+ Sbjct: 315 WPDLAIRTTFITGFPGETDAEFEELRDFVAQFKFERVGVFPYSLEPGTPAEKLDGHLPED 374 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVV- 439 VK R+ + + + + +A VG+ V+I+ E +G+ +P + V Sbjct: 375 VKQARVNAIMEVQQGVAFGWAEAQVGREHPVVIDGPDPEFANHFRGRTYADAPEIDCAVR 434 Query: 440 LNSKNHNIGDIIKVRIT 456 + KN GD ++ +IT Sbjct: 435 VKGKNLRPGDFVRAKIT 451 >gi|315651497|ref|ZP_07904518.1| 2-methylthioadenine synthetase [Eubacterium saburreum DSM 3986] gi|315486232|gb|EFU76593.1| 2-methylthioadenine synthetase [Eubacterium saburreum DSM 3986] Length = 440 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 132/440 (30%), Positives = 230/440 (52%), Gaps = 32/440 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS M + +G+E + ++AD++++NTC + A E+ + + L Sbjct: 7 SLGCDKNTVDSEMMLGLMNEKGFEYTDIDEEADVMIINTCGFIQSAKEESINAI-----L 61 Query: 91 KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + S++KE G+L ++V GC+AQ +EI++ P V+ ++G ++ ++ E +E G+ Sbjct: 62 EASKLKEVGNLKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEEVLGGE-- 119 Query: 150 VDTDYSVEDKF---ERL-SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++++F +RL SI N G A+L I EGC+K CT+C++P RG S Sbjct: 120 ------IKNEFLDLDRLPSISKKRKNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSY 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L ++ +A+ L G+ E+ L+ Q + G + G+K T LL L++I+G+ +R Sbjct: 174 PLDDLIAQAKDLATQGIKELILVAQETTLY-GVDIYGKK-TLPKLLKELAKIEGIEWIRI 231 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P +++D LI D + YL +P+Q SD IL+ M RR T + II R+R+ Sbjct: 232 LYCYPEEITDELIDVIASEDKVCKYLDIPIQHASDNILRRMARRTTYDDLVNIIGRLRNN 291 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDI + + I GFPGET +D ++ + ++ + + F YS GT + Q+DE Sbjct: 292 IPDITLRTTIIAGFPGETVEDVDTVIEFIKQMKFERLGVFTYSEEEGTVAAGFDNQIDEK 351 Query: 386 VKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438 K +R++ +Q+++ E+ + VG+ VLIE ++ +GR+ P + Sbjct: 352 EKEARRDRIMRVQQEISEKNLERK---VGKTFRVLIEGKLPDENVYIGRTYMDVPGVDGY 408 Query: 439 VL--NSKNHNIGDIIKVRIT 456 V + + GD V IT Sbjct: 409 VFVNTEREYMSGDFCDVLIT 428 >gi|170769043|ref|ZP_02903496.1| MiaB-like tRNA modifying enzyme YliG [Escherichia albertii TW07627] gi|170122115|gb|EDS91046.1| MiaB-like tRNA modifying enzyme YliG [Escherichia albertii TW07627] Length = 441 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 145/462 (31%), Positives = 236/462 (51%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ +E G+ Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + +P + +V LN + H GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGETHVKPGDILRVKVEHADEYDLWGSRV 441 >gi|315223707|ref|ZP_07865557.1| 2-methylthioadenine synthetase [Capnocytophaga ochracea F0287] gi|314946282|gb|EFS98281.1| 2-methylthioadenine synthetase [Capnocytophaga ochracea F0287] Length = 437 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 128/424 (30%), Positives = 211/424 (49%), Gaps = 37/424 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N ++ + F +GY+RV+ + AD+ V+NTC + E A + + + + Sbjct: 10 GCKLNFSETSTIARSFEEEGYQRVDFDEPADIYVINTCSVTENADK-------QFKQIVR 62 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-------ERARF 145 +K + GC AQ + EE L V++V+G + + + + L E Sbjct: 63 KALKTNPKAFLAAVGCYAQLKPEE-LASVDGVDLVLGAKEKFNITQYLDDLTKNNEGVVH 121 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +TD+ V G Y+ AFL +Q+GCD CT+C +P RGI S Sbjct: 122 SCEISETDFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPMARGISRSD 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVR 262 ++ ++ A+K+ D G+ EI L G N+ + GKG G K TF +L+ +L +++G+ R Sbjct: 171 TIENIIANAKKISDKGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVQALDKVEGIER 229 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ P + D I + +P+ H+P+QSGS+ ILK M RR+ Y + +I Sbjct: 230 LRISSIEPNLIKDETIDFIAQSNSFVPHFHIPLQSGSNEILKKMKRRYLRELYVSRVAKI 289 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R V PD I D IVGFPGETD+ F T ++ + + F YS R T M V Sbjct: 290 REVMPDACIGVDVIVGFPGETDEHFLETYYFLNDLDISYLHVFTYSERDNTEAVLMDGVV 349 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRSPWL 435 + V+A+R L+ +++ +F + +G+ VL E HG + + ++PW Sbjct: 350 PDAVRAKRSKMLRGLSAKKRNAFYTSQLGKEKTVLFESDNKQGYIHGFTENYVKVKAPWD 409 Query: 436 QSVV 439 S+V Sbjct: 410 PSLV 413 >gi|227826584|ref|YP_002828363.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus M.14.25] gi|227829226|ref|YP_002831005.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus L.S.2.15] gi|229577995|ref|YP_002836393.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus Y.G.57.14] gi|229583207|ref|YP_002841606.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus Y.N.15.51] gi|229583748|ref|YP_002842249.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus M.16.27] gi|238618670|ref|YP_002913495.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus M.16.4] gi|284996581|ref|YP_003418348.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus L.D.8.5] gi|227455673|gb|ACP34360.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus L.S.2.15] gi|227458379|gb|ACP37065.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus M.14.25] gi|228008709|gb|ACP44471.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus Y.G.57.14] gi|228013923|gb|ACP49684.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus Y.N.15.51] gi|228018797|gb|ACP54204.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus M.16.27] gi|238379739|gb|ACR40827.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus M.16.4] gi|284444476|gb|ADB85978.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus L.D.8.5] Length = 421 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 141/451 (31%), Positives = 230/451 (50%), Gaps = 44/451 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +V++YGC +N D+ M + S+GY V + ++AD+I+LNTC +R + E++ Sbjct: 2 KTIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERM---- 57 Query: 85 GRIRNLKNSRIKEGGDLL--VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 RIKE L +VVAGC++ AE +L +P +++ GPQ+ Sbjct: 58 -------KQRIKELNTLSKKLVVAGCMSSAEPATVLSIAPNASLI-GPQSV--------- 100 Query: 143 ARFGKRVVDTDYSVEDKF----ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 +R++D S E K +R I ++ G A + + +GC C+FC+ Sbjct: 101 ----ERIIDVIKSEERKIVLEGDRALITPRTFD---GKIAIIPVADGCAGNCSFCITKLA 153 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEI 257 R S L ++V+ AR + G EI L GQ+ A+ GLD G + D++ ++EI Sbjct: 154 RRKLRSYPLREIVNAARDAVKAGAKEIELTGQDTAAY---GLDLGGSISLVDVVNKVTEI 210 Query: 258 KGLVRLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G +R P + D LI+ + V ++HLPVQSG DR+LK MNR++T E Sbjct: 211 DGDFMIRIGMMTPEQAMRIIDNLIEVMRNPKVY-KFIHLPVQSGDDRVLKLMNRKYTIDE 269 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 Y++++ IRS P I++D I+G PGE +D F T+ L+ ++ + + YS R T Sbjct: 270 YKELVSEIRSKIPFANITTDIIIGHPGEDEDAFNNTLLLMKELRFERIHLAMYSIRPNTR 329 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 ++M QV ++VK +R+ K + +S + VG V+ + G+ KG +VGR Sbjct: 330 SASM-PQVPDSVKKKRIQIANKLYEDIALSIHLEYVGSTSRVITTELGR-KGSVVGRLMN 387 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 VV+ S+N +G V+IT+ L G Sbjct: 388 YIPVVIRSENVELGKWYNVKITEASFYDLRG 418 >gi|83309313|ref|YP_419577.1| 2-methylthioadenine synthetase [Magnetospirillum magneticum AMB-1] gi|82944154|dbj|BAE49018.1| 2-methylthioadenine synthetase [Magnetospirillum magneticum AMB-1] Length = 452 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 137/438 (31%), Positives = 221/438 (50%), Gaps = 29/438 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S M++ ++ E + +++NTC + +A + + +IR Sbjct: 44 TFGCRLNAYESEVMKE--HAKATE-----SGVETVIVNTCAVTAEAERQARQAIRKIR-- 94 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +E D +VV GC AQA E P ++ ++G + P++ A +R+V Sbjct: 95 -----RERPDARIVVTGCAAQAH-PETFDAMPEIDQILGNAEKMQ-PDIFA-APPAERIV 146 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D +E + +V G R R AF+ +Q+GCD CTFC++P+ RG S + ++ Sbjct: 147 VGDI-MEVREVASHLVSGFEGRAR---AFVEVQQGCDHRCTFCIIPFGRGPNRSVPMGRI 202 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++ ++L+ G E+ L G +V A+ G L G+ + L+ + L RLR ++ P Sbjct: 203 VEQIKELVAGGFNEVVLTGVDVTAY-GADLPGKPGLGQLVRRLLAALPELPRLRLSSLDP 261 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++ + L+ A L+P+ HL VQ+G D ILK M RRH + + RIR++RPD Sbjct: 262 VEVDEDLLAAIASEARLLPHFHLSVQAGDDTILKRMKRRHLRGDVITLAARIRALRPDAV 321 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 + +D I GFP E ++ F+ ++DLVD+ G F +S R GTP + M +V +V ER Sbjct: 322 LGADIIAGFPTEDEEMFQHSLDLVDEAGLTHLHVFPFSARPGTPAARM-PKVKGDVVKER 380 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450 L+ K +F +G + VLIEK GK G S V + G I Sbjct: 381 AARLRAKGAAAMAAFLATRIGGVESVLIEKDGK------GHSAHYLPVRVAGCAAEPGTI 434 Query: 451 IKVRITDVKISTLYGELV 468 + VRIT V L GEL Sbjct: 435 LNVRITSVDGDELVGELA 452 >gi|87301773|ref|ZP_01084607.1| hypothetical protein WH5701_00570 [Synechococcus sp. WH 5701] gi|87283341|gb|EAQ75296.1| hypothetical protein WH5701_00570 [Synechococcus sp. WH 5701] Length = 453 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 139/452 (30%), Positives = 226/452 (50%), Gaps = 38/452 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N D+ M + GY DA ++V+NTC + A ++ +R L Sbjct: 7 GCEKNRVDTEHMLGLLAQAGYGISADERDASVVVVNTCSFIQDARQE------SVRTLVE 60 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV--- 149 + E G L++ AGC+AQ EE+L P +VG Y + ++LER G+RV Sbjct: 61 --LAEQGKELII-AGCLAQHFREELLESLPEARAIVGTGDYQHIVDVLERVEAGERVNRV 117 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 D V D E L Y AFL + EGCD C FC++P RG + SR++ Sbjct: 118 SDVPTFVGD--EHLP----RYRTTSEAVAFLKVAEGCDYRCAFCIIPRLRGDQRSRTIES 171 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTS 268 +V EA +L D GV E+ L+ Q + G L G K ++LL +L E++ +R+ Y + Sbjct: 172 IVAEAHQLADQGVQELILISQITTNY-GLDLYG-KPQLAELLRALGEVEIPWIRVHY--A 227 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ ++ A+ ++ ++PYL LP+Q +L++MNR +++ RIR PD Sbjct: 228 YPTGLTPEVLSAYREVPNVLPYLDLPLQHSHPEVLRAMNRPWQTGLTTELLGRIREQLPD 287 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + + FIVGFPGET++ F + V++ + F +SP GT ++ + V V Sbjct: 288 AVLRTTFIVGFPGETEEQFEHLLRFVEEQRFDHVGVFTFSPEDGTAAVDLPDPVPAEVAI 347 Query: 389 E---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441 E RL+ Q+ + ++ N + VG+I++VLIE+ G+++GR +P + V Sbjct: 348 ERRNRLMAAQQPIAAER---NASWVGRIVDVLIEQENPSNGEMIGRCARFAPDVDGEVRV 404 Query: 442 SKNHN-----IGDIIKVRITDVKISTLYGELV 468 S G ++ VR+T L GE+V Sbjct: 405 SPGPGGLCAAPGTMVPVRLTASTPYDLQGEVV 436 >gi|46201319|ref|ZP_00055284.2| COG0621: 2-methylthioadenine synthetase [Magnetospirillum magnetotacticum MS-1] Length = 418 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 138/447 (30%), Positives = 218/447 (48%), Gaps = 43/447 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M++ + R + +++NTC + +A + + +IR Sbjct: 8 VLTFGCRLNAYESEVMKE------HARATE-SGVETVIVNTCAVTAEAERQARQAIRKIR 60 Query: 89 NLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLE 141 + N+RI VV GC AQA E P ++ ++G P + P Sbjct: 61 RERPNARI--------VVTGCAAQAH-PETFDAMPEIDQILGNAEKMQPGIFAEPP---- 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +R+V D +E + +V G R R AF+ +Q+GCD CTFC++P+ RG Sbjct: 108 ----AQRIVVGDI-MEVREVASHLVSGFEGRAR---AFVEVQQGCDHRCTFCIIPFGRGP 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S + ++V++ ++L+ G E+ L G +V A+ G L G+ + L+ + L Sbjct: 160 NRSVPMGRIVEQIKELVAGGFNEVVLTGVDVTAY-GADLPGKPGLGQLVRRLLAALPELP 218 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ P ++ + L+ A L+P+ HL VQ+G D ILK M RRH + + R Sbjct: 219 RLRLSSLDPVEVDEELLTAMASEPRLLPHFHLSVQAGDDTILKRMKRRHLRSDVIALAAR 278 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR++RPD + +D I GFP E + F +++LVD+ G F +S R GTP + M + Sbjct: 279 IRALRPDAVLGADIIAGFPTEDEAMFGRSLELVDEAGLTHLHVFPFSARPGTPAARM-PK 337 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V +V ER L+ K +F +G VLIEK GK G S V + Sbjct: 338 VKGDVVKERAARLRAKGAAAMEAFLATRIGSEESVLIEKDGK------GHSAHYLPVRVA 391 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 G I+ VRIT V+ L GEL Sbjct: 392 GCTAEPGTILNVRITSVEGDELVGELA 418 >gi|283780939|ref|YP_003371694.1| MiaB-like tRNA modifying enzyme YliG [Pirellula staleyi DSM 6068] gi|283439392|gb|ADB17834.1| MiaB-like tRNA modifying enzyme YliG [Pirellula staleyi DSM 6068] Length = 465 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 133/456 (29%), Positives = 232/456 (50%), Gaps = 42/456 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS RM + GY+ V D AD +V+NTC E+A + + + + L Sbjct: 23 SLGCPKNLVDSERMLGLLKLDGYDLVAEPDGADFVVVNTCGFIERARTESFQAIDEMLEL 82 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG-------PQTYYRLPELLERA 143 K K+G V+V+GC+A+ + E++L P ++ +VG Q RL LE Sbjct: 83 K----KQGRTKGVIVSGCLAERQKEQLLEDRPGIDCLVGVFGREQITQVADRLLGSLEEQ 138 Query: 144 RFG------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 R + + DTD RL I + A+L I EGCD+ CTFC +P Sbjct: 139 RSVFQPAPIRALSDTD--------RLRITPRHF-------AYLKISEGCDRLCTFCAIPK 183 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG ++ + +V+ EAR+L +GV E+ ++ Q+ + G L GE ++LL + ++ Sbjct: 184 MRGKHATKPMEEVLKEARQLAADGVKELVIVAQDTTYY-GIDLYGEP-RLAELLREIEKV 241 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +G+ +R +P ++D LI + ++PY+ +P+Q +D +L+ M+RR T E Sbjct: 242 EGIQWIRLMYFYPMYITDELIDVIAKSEKIVPYIDMPLQHINDTMLRRMSRRVTRAETEL 301 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 I ++R P++ + + FI GFPGET + + + + + + + F YS TP +N Sbjct: 302 QIKKLREAIPNLTLRTTFITGFPGETQEQYEELREFLREQKFERMGVFTYSFEPDTPAAN 361 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRS---- 432 + + + E VK ER L +E ++N+A + +++ V++++ + EK +GRS Sbjct: 362 LPDHLSEEVKNERREALMAVQQELAFAWNEAQIDKVMPVILDQSVEGEKNVWIGRSMADA 421 Query: 433 PWLQSVVLNSKNH---NIGDIIKVRITDVKISTLYG 465 P + +V + + + GDI+ V+I + L G Sbjct: 422 PDVDGLVFVTGHKYRLHAGDIVDVQIVTSQQYDLVG 457 >gi|256820597|ref|YP_003141876.1| MiaB-like tRNA modifying enzyme [Capnocytophaga ochracea DSM 7271] gi|256582180|gb|ACU93315.1| MiaB-like tRNA modifying enzyme [Capnocytophaga ochracea DSM 7271] Length = 435 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 128/424 (30%), Positives = 210/424 (49%), Gaps = 37/424 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N ++ + F +GY+RV+ D AD+ V+NTC + E A + + + + Sbjct: 10 GCKLNFSETSTIARSFEEEGYQRVDFDDPADIYVINTCSVTENADK-------QFKQIVR 62 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-------ERARF 145 +K + GC AQ + EE L V++V+G + + + + + E Sbjct: 63 KALKTNPKAFLAAVGCYAQLKPEE-LASVDGVDLVLGAKEKFNITQYIDDLTKNNEGVVH 121 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +TD+ V G Y+ AFL +Q+GCD CT+C +P RGI S Sbjct: 122 SCEISETDFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPMARGISRSD 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVR 262 ++ ++ A+K+ D G+ EI L G N+ + GKG G K TF +L+ +L +++G+ R Sbjct: 171 TIENIIANAKKISDKGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVQALDKVEGIER 229 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ P + D I +P+ H+P+QSGS+ ILK M RR+ Y + +I Sbjct: 230 LRISSIEPNLIKDETIDFIAQSKSFVPHFHIPLQSGSNEILKKMKRRYLRELYVSRVAKI 289 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R V PD I D IVGFPGETD+ F T ++ + + F YS R T M V Sbjct: 290 REVMPDACIGVDVIVGFPGETDEHFLETYYFLNDLDISYLHVFTYSERDNTEAVLMDGVV 349 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRSPWL 435 + V+A+R L+ +++ +F + +G+ VL E HG + + ++PW Sbjct: 350 PDAVRAKRSKMLRGLSAKKRNAFYTSQLGKEKTVLFESDNKQGYIHGFTENYVKVKAPWD 409 Query: 436 QSVV 439 S+V Sbjct: 410 PSLV 413 >gi|323705384|ref|ZP_08116959.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacterium xylanolyticum LX-11] gi|323535286|gb|EGB25062.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacterium xylanolyticum LX-11] Length = 437 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 129/449 (28%), Positives = 237/449 (52%), Gaps = 30/449 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS +M + +G+ VN+ +DAD++++NTC E A + ++ L Sbjct: 8 SLGCAKNIVDSEKMLGIIKKKGFNIVNNENDADVLIINTCGFIESAKRESIDYI-----L 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + ++K+ ++ +GC+++ +E+L P ++ V+G + ++ +++E GKR++ Sbjct: 63 EMGKLKKKRLKSLIASGCLSERYKDELLESLPELDAVIGTGDFLKIADVIEDTLKGKRIL 122 Query: 151 DTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + ++ E D + I+ + A+L I EGC+ C+FC++P RG S + Sbjct: 123 EYGHANELDDKDSPRILSTPKH-----YAYLKISEGCNNKCSFCIIPKLRGRYRSVKIED 177 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +++EA+ L +NGV E+ L+ Q+ + G+D K LL L+ I G+ +R + Sbjct: 178 LLNEAKMLAENGVKELILIAQDTTKY---GIDIYNKYMLPTLLRKLANINGIKWIRILYA 234 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++D LI + ++ Y+ +P+Q +D +L+ M R T + I++++S+ P Sbjct: 235 YPDSITDELIDEIKTNEKVLKYIDIPLQHSNDEVLRRMKRNTTRKKIEDTIEKLKSI-PG 293 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + I + FIVGFPGETDD+F + + + + F YS T +M Q+ E +K Sbjct: 294 MIIRTTFIVGFPGETDDEFDDLKKFIVEKKFNKLGVFTYSREEDTEAYDMQNQISEQIKQ 353 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440 +R ++ LQK + + +N +G EV++E G++ G GRS P + + Sbjct: 354 KRYNEIMLLQKNI---SLEYNKRLIGSEFEVVVE--GQKDGLYYGRSYIDAPDIDGITFF 408 Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++K NIGD KV+IT L GEL+ Sbjct: 409 KSNKKLNIGDFAKVKITKAFDYDLMGELL 437 >gi|312127957|ref|YP_003992831.1| miab-like tRNA modifying enzyme ylig [Caldicellulosiruptor hydrothermalis 108] gi|311777976|gb|ADQ07462.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor hydrothermalis 108] Length = 440 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 139/452 (30%), Positives = 230/452 (50%), Gaps = 33/452 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M G+E + +DAD+IV+NTC A ++ + + Sbjct: 8 SLGCNKNLVDSEIMMGACVKAGFEITSHAEDADVIVVNTCGFINDAKQESIDTILDMAEY 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 KN + K ++V GC+ Q +EIL + P V+ ++G + +LPE+++ GK+ + Sbjct: 68 KNKKCK-----FLIVTGCLTQRYKDEILEQMPEVDAILGVKEMLKLPEVIKDLYEGKQKI 122 Query: 151 ----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 DT V I Y A++ I EGC+ C++C +P RG SR Sbjct: 123 KVFDDTSSFVYYSSMPRVIATPSY------YAYIKIAEGCNNRCSYCSIPLIRGKYTSRP 176 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + +V EA++L + G EI L Q+ + G L G+K + LL L +I+ + +R+ Sbjct: 177 IEDIVKEAKELAEKGYQEIVLTAQDTTKY-GTDLYGKKMLHA-LLEELEKIEKIKWIRFL 234 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 S+P D+ + LI+ ++ Y +P+Q +DRILK MNR+ T +++I++IR Sbjct: 235 YSYPEDVDENLIEVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRSF 294 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 ++ I + +VGFP ETD++F + + + +F YS GT S L QVD+ V Sbjct: 295 DEVIIRTTVLVGFPTETDEEFEELCSFLKWAEFDRLGAFMYSQEEGTLASQ-LPQVDDEV 353 Query: 387 KA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWL------Q 436 K E++L +Q+K+ ++Q N VG+ EV+IE K+K +GRS + + Sbjct: 354 KQRRYEKVLNIQRKISKRQ---NKKRVGREYEVVIE--AKDKNNFYIGRSQFEAPEVDGK 408 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V + K G +KV+I D L GE++ Sbjct: 409 VLVFSQKKLTAGKFVKVKILDAFEYDLVGEII 440 >gi|238924037|ref|YP_002937553.1| MiaB-like tRNA modifying enzyme YliG [Eubacterium rectale ATCC 33656] gi|238875712|gb|ACR75419.1| MiaB-like tRNA modifying enzyme YliG [Eubacterium rectale ATCC 33656] gi|291524773|emb|CBK90360.1| SSU ribosomal protein S12P methylthiotransferase [Eubacterium rectale DSM 17629] Length = 441 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 137/455 (30%), Positives = 229/455 (50%), Gaps = 28/455 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + S GC N+ DS M M + G E + AD+I++N+C A E+ + + Sbjct: 2 KLLFISLGCDKNLVDSEYMIGMLANDGIEMTDDETQADIIIVNSCCFIGDAKEESINTI- 60 Query: 86 RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY----YRLPELL 140 L+ ++ KE G ++V GC+AQ +EI + P V+ ++G +Y + E L Sbjct: 61 ----LEMAQYKETGKCKSLIVTGCLAQRYKDEIFKEIPEVDAILGTNSYDTIVEAVHETL 116 Query: 141 ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 E+ R+ ++ S++ K IV G G A+L I EGC+K CT+CV+P R Sbjct: 117 EKHRYSNLHTLEGLPSIKTK----RIVTTG-----GHFAYLKIAEGCNKNCTYCVIPSVR 167 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G S + ++++A+ L++ G E+ L+ Q + G L GEK + LL L++I G Sbjct: 168 GRYRSVPMEDLIEQAKSLVEQGAKELILVAQETTLY-GVDLYGEK-SLHKLLDELNKISG 225 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L +R +P ++ D LI++ + + YL +P+Q +D IL+ M R+ T E + I Sbjct: 226 LFWIRIMYCYPEEIYDELIESMIKDEKVCHYLDMPIQHCNDDILRRMGRKTTKAELMERI 285 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +R PDI + + I GFPGET D+ M V+ + + + +F YSP GT + M Sbjct: 286 RMLRERIPDITLRTTLICGFPGETQDNHEELMQFVNDMEFDRLGAFTYSPEEGTKAAAMP 345 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435 +Q+DE++KA+ + + E N+ G+ + V IE ++ +GR+ P + Sbjct: 346 DQIDEDIKADWQADVMELEEEVIFDKNETLKGKELYVFIEGKVADENAYIGRTYRDAPNV 405 Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + + + + GDI KV +T L GELV Sbjct: 406 DGYIFINTDETLMTGDICKVMVTGAYEYDLIGELV 440 >gi|229815354|ref|ZP_04445689.1| hypothetical protein COLINT_02400 [Collinsella intestinalis DSM 13280] gi|229809134|gb|EEP44901.1| hypothetical protein COLINT_02400 [Collinsella intestinalis DSM 13280] Length = 445 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 141/461 (30%), Positives = 221/461 (47%), Gaps = 50/461 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA----EKVYSFLGR 86 + GC N D+ RM + GY+ V S +DAD +++NTC A E + Sbjct: 10 TLGCAKNEVDTDRMRALLNGAGYDEVFSAEDADAVIINTCSFLASATSESIETTLTLAEE 69 Query: 87 I-RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I ++ +RI V+ GCV G E+ P LPE+ R Sbjct: 70 ISEGVRGTRI--------VMCGCVPSRYGSEL------------PD---ELPEVAAFVRT 106 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGY--NRKRGV---TAFLTIQEGCDKFCTFCVVPYTRG 200 + D SV D+ + VD + + KR V A++ I +GCD++C+FC +PY RG Sbjct: 107 DEE--DGIVSVMDEVLGIERVDPPFIPSVKRTVESAVAYVKISDGCDRYCSFCAIPYIRG 164 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---KCTFSDLLYSLSEI 257 SRS ++ E R L+ GV EI L+GQ+ W G E + L+ +++E Sbjct: 165 RYHSRSAESILSEVRDLVAGGVREIVLIGQDTGIW-GTDFKDEVDGPTNLAQLMIAVAEA 223 Query: 258 --KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 V +R P M+D LI A D ++PY+ +PVQ + R+LK+M+R +A + Sbjct: 224 VRPEHVWIRVLYLQPEGMTDELIAAIRDTPEVLPYIDIPVQHCNARVLKAMHRSGSAEQL 283 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + ++R+ P + I + +VGFPGETDD+ + +D+ G+ F YS GT Sbjct: 284 SDLFAKLRAEIPAMVIRTTSLVGFPGETDDEAAEMLAFMDREGFDYTSVFPYSQEEGTFA 343 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSP 433 + M QVDE+VK ER + A VG++ EV+++ + E +L+G + Sbjct: 344 AKMDGQVDEDVKLERTQAAMDLAEALGFAATAAHVGEVAEVIVDGIEETDEGPELIGHA- 402 Query: 434 WLQ------SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 W Q +V L + +GDI++V+ TD L GE+V Sbjct: 403 WFQAPDSDGAVHLEVTDAAVGDILQVKFTDSFCYELVGEVV 443 >gi|302670644|ref|YP_003830604.1| MiaB-like tRNA modifying enzyme [Butyrivibrio proteoclasticus B316] gi|302395117|gb|ADL34022.1| MiaB-like tRNA modifying enzyme [Butyrivibrio proteoclasticus B316] Length = 451 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 151/458 (32%), Positives = 223/458 (48%), Gaps = 38/458 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N D+ M M +G+ + +A+ V+NTC I + E + + L Sbjct: 7 SLGCDKNRVDTEVMLGMLADRGHNFTDDEQEAEAAVVNTCCFINDAKEESINTILELAER 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGKR 148 K+ ++K ++V GC+AQ EEI P V+ ++G + ++ E L E K Sbjct: 67 RKSGQLK-----ALIVTGCLAQRYKEEIQDEIPEVDEILGVSSTDKIIEALDETIERNKL 121 Query: 149 VVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +Y D R I GG R G+ +L I EGCDK CT+C++P RG S Sbjct: 122 FSHKNYF--DDVNRKPI--GGKKRVITTGGLYNYLKIAEGCDKHCTYCIIPKVRGAYRSV 177 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + Q++ +AR L + GV E+ L+ Q + G L GEK +LL+ L EI G +R Sbjct: 178 PMEQLLADARNLAEAGVTELLLVAQETTLY-GTDLYGEK-KLPELLHKLCEIDGFKWIRI 235 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P ++++ LI+ + YL +P+QSGSDRILK M RR E R +++ +R Sbjct: 236 LYCYPEEITEELIQTIKTEPKICHYLDIPIQSGSDRILKLMGRRTNNAEIRALVEHLREE 295 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDI I + I GFPGET D T LV+ + + + F YS TP + M +QV E Sbjct: 296 IPDICIRTTLISGFPGETAADHNETFKLVEDLRFDRLGVFTYSQEEDTPAATMPDQVTER 355 Query: 386 VKAER---LLCLQKKLREQQVSFNDA--CVGQIIEVLIE-----KHGKEKGKLVGRS--- 432 VK R L+ LQ Q+++F +A VG+I+E +IE +E V R+ Sbjct: 356 VKNTRRNKLMRLQ-----QEIAFENAENMVGKIVEAVIEGRITDTDDEEGFSYVARTYKD 410 Query: 433 -PWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGE 466 P + V + + GD IKV IT L GE Sbjct: 411 APDIDGYVFVTGVKRELMTGDYIKVLITGSNEYDLIGE 448 >gi|295133883|ref|YP_003584559.1| 2-methylthioadenine synthetase [Zunongwangia profunda SM-A87] gi|294981898|gb|ADF52363.1| possible 2-methylthioadenine synthetase [Zunongwangia profunda SM-A87] Length = 445 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 130/425 (30%), Positives = 210/425 (49%), Gaps = 39/425 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N ++ + F +G+E+V + AD+ V+NTC + E A + R + + Sbjct: 12 GCKLNFSETSTIARSFQEEGFEKVEFNEYADIYVINTCSVTENADK-------RFKTIVK 64 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGK-- 147 K + ++ GC AQ + EE L V++V+G +++ + L + FG+ Sbjct: 65 QAQKANEEAFIIGVGCYAQLKPEE-LAAVDGVDLVLGATEKFKITDYLHDLSKNDFGEVH 123 Query: 148 --RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + D+ V G Y+ AFL +Q+GCD CT+C +P RGI S Sbjct: 124 SCEIQEADFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSD 172 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVR 262 L V+ A ++ + G+ EI L G N+ + GKG G K TF DL+ +L E+KG+ R Sbjct: 173 KLENVLKNAAEISEQGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLDLVKALDEVKGIER 231 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ P + + I D +P+ H+P+QSGS+ ILK M RR+ Y + +I Sbjct: 232 LRISSIEPNLLKNETIDFVSDSSTFVPHFHIPLQSGSNDILKLMRRRYLRELYVDRVAQI 291 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + V P I D IVGFPGETD+ F T + ++ + F YS R TP + M V Sbjct: 292 KKVMPHACIGVDVIVGFPGETDEHFLETYTFLTELDISYLHVFTYSERDNTPAAEMDGVV 351 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPW 434 V+ +R L+ +++ +F ++ +G VL E KE G + G ++PW Sbjct: 352 SNKVRKKRSKMLRGLSAKKRRAFYESQLGTTHTVLFEGENKE-GYIHGFTENYVKVKAPW 410 Query: 435 LQSVV 439 +V Sbjct: 411 NPELV 415 >gi|315924493|ref|ZP_07920714.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter alactolyticus ATCC 23263] gi|315622197|gb|EFV02157.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pseudoramibacter alactolyticus ATCC 23263] Length = 444 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 134/456 (29%), Positives = 220/456 (48%), Gaps = 42/456 (9%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA----EKVYSF 83 F+ + GC N DS +M GY + D A LI++NTC E A +K++ + Sbjct: 8 FISTLGCDKNTVDSEQMAGGLLQAGYRVTDEPDAASLIIVNTCCFIEAAKKESIDKIFEY 67 Query: 84 LGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L K G+ VVAGC+AQ +E+ + P ++ +G LPE++ Sbjct: 68 LP---------FKTRGNCECFVVAGCMAQRYAKELRKEIPEIDFFIGVNQIDDLPEVISH 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K + +S Y + + VTA+L I EGCD CT+C +P RG Sbjct: 119 QSEEKAFISAHFSAS--------AAPRYLKDKTVTAYLKISEGCDNHCTYCAIPTIRGRH 170 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR+ ++ EA+ L +GV E+ L+ QN+ + G L G + + LL LSE Sbjct: 171 HSRTPEAILAEAKILYSSGVRELILVAQNLTQY-GSDLPGNE-NLASLLTQLSEKIPFKW 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R +P +++ L+ A + + Y +P+Q + ILK M R + QI D++ Sbjct: 229 IRLLYLYPEGITEELLTAIKHHENICRYFDMPIQHTENEILKRMGRH---IDKAQIYDKV 285 Query: 323 RSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + +R PD + + I GFPGE++ F + + + + + +F YS GTP M Sbjct: 286 KLIRKMLPDAVLRTTVIAGFPGESEAQFEEMLADLQTLRFERLGAFAYSREEGTPAYTMA 345 Query: 380 EQVDENVKAERLLCLQKKLREQQ----VSFNDACVGQIIEVLIEK---HGKEKGKLVGRS 432 +Q+D+ VK RL +++ EQQ + N+A +G+ +EVLI++ +G G+ G + Sbjct: 346 DQIDKTVKETRL----RRIYEQQQGITAAANEAMIGKTVEVLIDENQTNGVSIGRTRGEA 401 Query: 433 PWLQ-SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 P + V++ + +G KV+I D L GEL Sbjct: 402 PEVDCDVLIEQSDLPVGQFFKVKIIDSIEYDLIGEL 437 >gi|225378030|ref|ZP_03755251.1| hypothetical protein ROSEINA2194_03690 [Roseburia inulinivorans DSM 16841] gi|225210031|gb|EEG92385.1| hypothetical protein ROSEINA2194_03690 [Roseburia inulinivorans DSM 16841] Length = 441 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 134/456 (29%), Positives = 222/456 (48%), Gaps = 32/456 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84 + S GC N+ D+ M M G E N +AD+I++NTC I + E V + L Sbjct: 2 KLLFVSLGCDKNLVDTEFMLGMLRDDGIEITNDETEADIIIVNTCCFINDAKEESVNTIL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 K +K ++V GC+AQ EEI P V+ ++G +Y + + + A Sbjct: 62 EMAEYKKTGPLK-----ALIVTGCLAQRYKEEIKTEIPEVDAILGTNSYEDIVKAVHEAL 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDG--GYNRKRGVT-----AFLTIQEGCDKFCTFCVVPY 197 G +E ++G + KR VT A+L I EGC+K CT+C++PY Sbjct: 117 GGTF-----------YENFKTLEGLPSIHTKRSVTTGGHFAYLKIAEGCNKRCTYCIIPY 165 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG S + ++ +A++L+ NG E+ L+ Q + G L GEK + LL L++I Sbjct: 166 IRGNYRSVPMEDLIGQAKELVANGAKELILVAQETTLY-GIDLYGEK-SLHKLLDELNKI 223 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 GL +R +P ++ + LI + + + YL +P+Q +D +LK M RR + + + Sbjct: 224 NGLFWIRIMYCYPEEIYEDLIDSMIRNEKVCHYLDIPIQHSNDTMLKRMGRRTSHDDLVR 283 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 II +R PDI + + I GFPGET + M ++ + + + +F YSP GTP + Sbjct: 284 IITHLRERIPDITLRTTLICGFPGETQEIHEELMQFINDMEFDRLGAFTYSPEEGTPAAA 343 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433 +QVDE +K + + + E N+ G+ + V IE ++ VGR+ P Sbjct: 344 FEDQVDEELKKDWQADVMELQEEVIFDKNEEMKGRELYVFIEGQVEDDNAYVGRTYRDAP 403 Query: 434 WLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467 + + + + + GDI+KV++T L GE+ Sbjct: 404 DIDGYIFINTDETLMTGDIVKVKVTGAYEYDLIGEI 439 >gi|15899133|ref|NP_343738.1| hypothetical protein SSO2380 [Sulfolobus solfataricus P2] gi|284173752|ref|ZP_06387721.1| hypothetical protein Ssol98_03728 [Sulfolobus solfataricus 98/2] gi|13815682|gb|AAK42528.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] gi|261600882|gb|ACX90485.1| RNA modification enzyme, MiaB family [Sulfolobus solfataricus 98/2] Length = 421 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 140/449 (31%), Positives = 236/449 (52%), Gaps = 36/449 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +V++YGC +N D+ M + S+GY V + ++AD+I+LNTC +R + E++ Sbjct: 2 KNIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERM---- 57 Query: 85 GRIRNLKNSRIKEGGDLL--VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 RIKE L +VVAGC++ AE +L +P +++ GPQ+ R+ +++ + Sbjct: 58 -------KQRIKELNTLSKKLVVAGCMSSAEPATVLSIAPNASLI-GPQSVERIVDIV-K 108 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K V++ D R I ++ G A + + +GC C+FC+ R Sbjct: 109 SEERKIVIEGD--------RALITPRTFD---GKIAIIPVADGCAGNCSFCITKLARRKL 157 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 S L ++V+ AR I +G EI L GQ+ A+ GLD G + D++ +++I G Sbjct: 158 RSYPLREIVNAARDAIQSGAREIELTGQDTAAY---GLDLGGSISLVDVVNKVADIDGDF 214 Query: 262 RLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 +R P + D LI+A + V ++HLPVQSG DR+LK MNR++T EY+++ Sbjct: 215 MIRIGMMTPEQAMRIMDDLIEAIRNPKVY-KFIHLPVQSGDDRVLKLMNRKYTVDEYKEL 273 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I IR P + I++D IVG PGE ++ F T+ L+ ++ + + YS R T ++M Sbjct: 274 ISEIRHKIPFVNITTDIIVGHPGEDEEAFNNTLLLMKELRFERIHLAMYSIRPNTRSASM 333 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 QV +++K +R+ K + +S + VG V+ + G+ KG ++GR V Sbjct: 334 -PQVPDSIKKKRIQIANKLYEDLALSIHLDYVGSTSRVITTELGR-KGSVIGRLMNYIPV 391 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467 V+ S+N +G V+IT+ L G L Sbjct: 392 VIRSENVELGKWYDVKITEASFYDLRGIL 420 >gi|300021843|ref|YP_003754454.1| MiaB-like tRNA modifying enzyme YliG [Hyphomicrobium denitrificans ATCC 51888] gi|299523664|gb|ADJ22133.1| MiaB-like tRNA modifying enzyme YliG [Hyphomicrobium denitrificans ATCC 51888] Length = 461 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 149/484 (30%), Positives = 230/484 (47%), Gaps = 52/484 (10%) Query: 5 IKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADL 64 +K+ A + D P+ FV S GC + DS R+ ++GY + + AD+ Sbjct: 6 VKVNAKARRAAHGSDTAAAPKVGFV-SLGCPKALVDSERIITKLRAEGYMIASDYEGADV 64 Query: 65 IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124 +V+NTC + A ++ +G N N R V+V GC E I P V Sbjct: 65 VVVNTCGFLDSAKKESLDAIGEAMN-ANGR--------VIVTGCFG-VEENRIRDAHPGV 114 Query: 125 NVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQE 184 V GP Y ++ E + D + D F L +G R A+L I E Sbjct: 115 LAVTGPHQYEQVVEAVH---------DAVPPLHDPFVDLVPPEGLRLTPRHY-AYLKISE 164 Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA---------- 234 GC+ C+FC++P RG SR + V+ EA +L++ GV E+ ++ Q+ +A Sbjct: 165 GCNNRCSFCIIPALRGDLASRPSNHVMGEAERLVNAGVKELLVISQDTSAYGLDIKYAES 224 Query: 235 -WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293 W+G L K F DL +L ++ VR+ Y +P D +I D +L PYL + Sbjct: 225 AWKGAPL---KARFLDLSRALGDLGVWVRMHYVYPYPH--VDDVIPLMADGKIL-PYLDI 278 Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 P Q S +LK+M R + + I R R V PD+AI S FIVGFPGET++DF +D Sbjct: 279 PFQHASPAVLKAMRRPAAQEKTAERIRRWREVCPDLAIRSTFIVGFPGETEEDFAFLLDW 338 Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACV 410 + + G +A FKY P G + + V + VK E R + +QK + Q+ + Sbjct: 339 LKEAGINRAGCFKYEPVEGAKANAIDGAVPDEVKEERWHRFMAVQKDVSSAQLERK---L 395 Query: 411 GQIIEVLIEKHGKEKGKLVGRSPWLQ-----SVVLNS-KNHNIGDIIKVRITDVKISTLY 464 GQ I+VLI++ ++ +GRS W +V LN ++ N GDI++ ++ + L+ Sbjct: 396 GQTIDVLIDEVDEDGA--IGRSKWDAPEIDGNVFLNGERDVNAGDIVRAKVVEAGDYDLW 453 Query: 465 GELV 468 E V Sbjct: 454 AERV 457 >gi|225017551|ref|ZP_03706743.1| hypothetical protein CLOSTMETH_01478 [Clostridium methylpentosum DSM 5476] gi|224949701|gb|EEG30910.1| hypothetical protein CLOSTMETH_01478 [Clostridium methylpentosum DSM 5476] Length = 441 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 139/448 (31%), Positives = 224/448 (50%), Gaps = 25/448 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D+ + G+E + AD++V+NTC E A ++ + L Sbjct: 9 SLGCPKNQVDAEMLLSNIKRDGFEITADVQQADVVVINTCGFIESAKQESIDSI-----L 63 Query: 91 KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + +KE G L VVV GC+A+ EE+ + P V+VV+G + + + A G++V Sbjct: 64 EFCALKEQGQLKCVVVTGCLAERYQEELAKEIPEVDVVLGIGSNAEIARAITDALDGRKV 123 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 D DK + L++ A+L I EGCD CT+C +P RG SR L Sbjct: 124 SD----FADK-QALALNGERVISTPSYFAYLKIAEGCDNNCTYCAIPAIRGPYRSRKLED 178 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 +V+EA L +GV E+ ++ Q+ + G L GE +LL L +I G V +R + Sbjct: 179 IVEEAEWLASSGVKELIVVAQDTTRY-GSDLYGE-LKLPELLRRLCQIDGFVWIRVLYCY 236 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P ++D L+ + + Y+ +P+Q + +L+ M+RR T E ++ R+R P+I Sbjct: 237 PEMVTDELLDVLAEEPKMAKYIDIPIQHINSAVLRRMHRRSTREEILSVVQRVRERVPNI 296 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 + + I GFPGET + F ++ V + + + F YS GTP + + +Q+DE KA Sbjct: 297 TLRTTLIAGFPGETKEQFEELVEFVKESKFDRLGCFAYSQEEGTPAAKLPDQLDEETKAR 356 Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL-- 440 R ++ Q+ + E++ N A +G+I++VL+E E VGRS P + VVL Sbjct: 357 RAELVMLEQQTINEER---NRAQLGKIVKVLVEGFDMETCCYVGRSEADAPDIDGVVLFV 413 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + K + GD +V I D+ L G V Sbjct: 414 SEKELSPGDFAEVEIIDILDYDLMGRAV 441 >gi|320355317|ref|YP_004196656.1| MiaB-like tRNA modifying enzyme [Desulfobulbus propionicus DSM 2032] gi|320123819|gb|ADW19365.1| MiaB-like tRNA modifying enzyme [Desulfobulbus propionicus DSM 2032] Length = 444 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 131/441 (29%), Positives = 219/441 (49%), Gaps = 24/441 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + + GC++N ++S F ++G V +AD+ V+NTC + KA ++ + Sbjct: 2 KRIAITTLGCKVNQFESAAFASGFEARGCTLVPFQAEADVYVINTCTVTAKAGQQSRQLI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R+ + E VVV GC AQ + E + + +VG + LL A Sbjct: 62 RRV-------LHEHPGARVVVTGCYAQMDPEAVFSLADQPVAIVGNGNKH----LLVEAA 110 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D + E+ I D R RG T A+L IQ+GCD FC++C+VPYTRG Sbjct: 111 LAESSPDLVLLMGRIREKKEICDLPVTRFRGRTRAYLRIQDGCDNFCSYCIVPYTRGRSR 170 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S L++++ + +D G E+ + G NV + G LD + +S L + GL RL Sbjct: 171 SLPLTKILAQTAVFVDQGYRELVITGINVGKY-GLDLDEGETIYSLLARLCRDFPGL-RL 228 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ P +++D L+ MP+LH+P+QSG D++L MNRR+T E+ +I+R+ Sbjct: 229 RLSSIEPTEVNDQLLDLMSGSPNFMPHLHIPLQSGDDQVLARMNRRYTRAEFAAVIERVH 288 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P I D + GFPGET+ + T L+ + F YS R GT +++ +Q+ Sbjct: 289 QALPLATIGCDVLGGFPGETEAEADNTYRLLTDLPVHYLHVFPYSRRPGTLAASLPQQLP 348 Query: 384 ENVKAERLLCLQKKLR-----EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 VK R+ ++LR ++Q ++ C G+ +VL+E+ + G L G S + Sbjct: 349 GPVKEARV----QRLRGLDAAKRQAAYQANC-GRTHQVLVERRQAKTGLLQGFSENYVPI 403 Query: 439 VLNSKNHNIGDIIKVRITDVK 459 + + I ++ VR+ V+ Sbjct: 404 LFAGGSGLIRQVVPVRLVAVE 424 >gi|261821225|ref|YP_003259331.1| ribosomal protein S12 methylthiotransferase [Pectobacterium wasabiae WPP163] gi|261605238|gb|ACX87724.1| MiaB-like tRNA modifying enzyme YliG [Pectobacterium wasabiae WPP163] Length = 437 Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 140/463 (30%), Positives = 229/463 (49%), Gaps = 47/463 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDA+L+++NTC + A ++ Sbjct: 4 PRIGFV-SLGCPKNLVDSERILTELRTEGYQVVPRYDDAELVIVNTCGFIDSAVQESLEA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E + I P V + GP +Y ++ + + Sbjct: 63 IGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQVLSHVHQ- 111 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + F L + + G A+L I EGC+ CTFC++P RG Sbjct: 112 -------HVPKPTHNPFTSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLD 163 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V+DEA++L+D GV E+ ++ Q+ +A W G+ + K + + L Sbjct: 164 SRPIGSVLDEAKRLVDAGVKELLVISQDTSAYGADVKQRTGFWNGQPV---KTSMASLCE 220 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L+ + VRL Y +P + A G + +PYL +P+Q S +ILK M R Sbjct: 221 QLASLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPKILKLMKRPGAV 277 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I R R + PD+ + S FIVGFPGET++DF+ +D + + + FK+SP G Sbjct: 278 ERTLERIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLQEAKLDRVGCFKFSPVEG 337 Query: 373 TPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427 + + +QV E VK E R + LQ+ + Q++ +G+ + VLI++ +E G+ Sbjct: 338 ASANALPDQVPEEVKEERFHRFMQLQQAISTQRLQDK---IGREVLVLIDEIDEEGAIGR 394 Query: 428 LVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + +P + +V LN + +GDI+KV+I L+G V Sbjct: 395 SMADAPEIDGAVYLNGETGVKVGDIVKVKIEHADEYDLWGSRV 437 >gi|255037356|ref|YP_003087977.1| MiaB-like tRNA modifying enzyme YliG [Dyadobacter fermentans DSM 18053] gi|254950112|gb|ACT94812.1| MiaB-like tRNA modifying enzyme YliG [Dyadobacter fermentans DSM 18053] Length = 436 Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 137/456 (30%), Positives = 229/456 (50%), Gaps = 35/456 (7%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTCHIREKAAEK 79 IV + + + GC N+ DS + G+ + + DD+ ++V+NTC + A E+ Sbjct: 6 IVKNKVNIVTLGCSKNLVDSEVLYTQLKGNGFAVDHESKKDDSQIVVINTCGFIDNAKEE 65 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 + + R + K + + + V V GC++ +E+ P V+ G LP L Sbjct: 66 SINTILRYADAKAAGMVDK----VYVTGCLSHRYKDELSVEIPTVDAWFGTN---ELPRL 118 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 L + + DY E ERL Y A+L I EGCD+ C+FC +P R Sbjct: 119 L-------KTLKADYKHELVGERLLTTPAHY-------AYLKIAEGCDRPCSFCAIPLMR 164 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258 G +SRS+ +V EA+ L G E+ L+ Q++ + GLD +K SDLL +LS+++ Sbjct: 165 GGHVSRSIEDLVKEAKSLAKRGTKELILIAQDLTYY---GLDIYKKRNLSDLLRNLSDVE 221 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ +R ++P ++ + + YL +P+QSGS +LK M R T + + Sbjct: 222 GIEWIRLQYAYPAGFPMDVLDVMNERSNIAKYLDMPLQSGSTEMLKLMRRGITREKTEAL 281 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I IR PDIA+ + IVG PGET++ F T + V+K+ + + +F+YS T +M Sbjct: 282 IHSIRDKVPDIALRTTLIVGHPGETEELFDETYEFVEKMRFDRLGAFQYSHEDNTHSFSM 341 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434 + V+ VK ER + + + N A +G+ +VL ++ KE G +GR SP Sbjct: 342 EDDVEAEVKQERADAIMELQQGISAELNQAKIGKTFKVLFDR--KEGGYFIGRTEFDSPE 399 Query: 435 LQS--VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + +VL S+ +GD +V++T + LYGE++ Sbjct: 400 VDNEVLVLASQYVRLGDYAQVKVTSAEEFDLYGEVI 435 >gi|89891221|ref|ZP_01202728.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BBFL7] gi|89516533|gb|EAS19193.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BBFL7] Length = 447 Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 120/397 (30%), Positives = 204/397 (51%), Gaps = 16/397 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F +G+ERV+ AD+ V+NTC + E A ++ S + + + + Sbjct: 22 TLGCKLNFSETSTIARDFEQEGFERVDFEKRADIYVINTCSVTENADKRFKSIVKKAQQV 81 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 D + GC AQ + EE L V++V+G +++ + L + K Sbjct: 82 NE-------DAFTIAVGCYAQLKPEE-LAAVDGVDLVLGATEKFKITDYLNQ--LSKEEP 131 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +S E + G Y+ AFL +Q+GCD CT+C +P RGI S +L V Sbjct: 132 TQIHSCE--IDEADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDTLENV 189 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLRYTT 267 ++ AR + + G+ EI L G N+ + GKG G K TF DL+++L + G+ RLR ++ Sbjct: 190 MENARLISEQGIKEIVLTGVNIGDY-GKGEFGNKRHEHTFLDLVHALDTVNGIERLRISS 248 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P + + I+ + +P+ H+P+Q+G++ +L M RR+ Y + +I+ V P Sbjct: 249 IEPNLLKNETIEFVSGANAFVPHFHIPLQAGNNELLGKMKRRYNRELYVDRVTKIKEVMP 308 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D I D IVGFPGETDD F T + + + + F YS R T + M V + V+ Sbjct: 309 DCCIGVDVIVGFPGETDDHFLDTYNFLSDLNISYLHVFTYSERDNTEAATMEGVVPKKVR 368 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 A+R L+ +++ +F ++ +G+ VL E +E Sbjct: 369 AKRSKMLRGLSVKKRRAFYESQLGKTKTVLWEAENRE 405 >gi|15596113|ref|NP_249607.1| hypothetical protein PA0916 [Pseudomonas aeruginosa PAO1] gi|107100372|ref|ZP_01364290.1| hypothetical protein PaerPA_01001397 [Pseudomonas aeruginosa PACS2] gi|218893115|ref|YP_002441984.1| hypothetical protein PLES_44001 [Pseudomonas aeruginosa LESB58] gi|254245200|ref|ZP_04938522.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|313105799|ref|ZP_07792062.1| hypothetical protein PA39016_000110096 [Pseudomonas aeruginosa 39016] gi|81541685|sp|Q9I541|RIMO_PSEAE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|9946818|gb|AAG04305.1|AE004525_13 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|126198578|gb|EAZ62641.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218773343|emb|CAW29155.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] gi|310878564|gb|EFQ37158.1| hypothetical protein PA39016_000110096 [Pseudomonas aeruginosa 39016] Length = 440 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 150/472 (31%), Positives = 228/472 (48%), Gaps = 64/472 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G I E G V+V GC+ E I P V V GPQ Y ++ Sbjct: 65 IGE-------AIAENGK--VIVTGCMG-VEEHAIRDVHPSVLAVTGPQQYEQV------- 107 Query: 144 RFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 V V K E +VD G A+L I EGC+ C+FC++P R Sbjct: 108 -----VTAVHEVVPPKTEHNPLVDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMR 162 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR + V+ EA +L+ GV E+ ++ Q+ +A W G+ + K Sbjct: 163 GKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKTDFWNGQPV---KTRMK 219 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 +L +LS + VRL Y +P + A G L+PYL +P Q S ++LK+M R Sbjct: 220 ELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAAGK---LLPYLDIPFQHASPKVLKAMKR 276 Query: 309 RHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 A+E + + I + R + P++ I S FIVGFPGET++DF+ +D + + + F+ Sbjct: 277 --PAFEDKTLARIKQWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQ 334 Query: 367 YSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 YSP G P + + LE V + VK ER + Q+ + ++ VG+ IEVLI++ Sbjct: 335 YSPVEGAPANELGLEPVPDEVKQDRWERFMAHQQAISAARLQLK---VGKEIEVLIDEVD 391 Query: 423 KEKGKLVGRSPWLQS------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ VGRS W + V ++S GD ++VRITD L+ ELV Sbjct: 392 EQGA--VGRS-WADAPEIDGNVFVDSDELKPGDKVRVRITDADEYDLWAELV 440 >gi|283833872|ref|ZP_06353613.1| RNA modification enzyme, MiaB family [Citrobacter youngae ATCC 29220] gi|291070543|gb|EFE08652.1| RNA modification enzyme, MiaB family [Citrobacter youngae ATCC 29220] Length = 435 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 138/453 (30%), Positives = 233/453 (51%), Gaps = 40/453 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ +G N Sbjct: 8 SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIGEALN- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 E G V+V GC+ A+ ++I P V + GP +Y ++ E + + Sbjct: 67 ------ENGK--VIVTGCLG-AKVDQIREVHPKVLEITGPHSYEQVLEHVHHYVPKPK-- 115 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F+ L + + G A+L I EGC+ CTFC++P RG +SR + V Sbjct: 116 ------HNPFQSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDV 168 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVR 262 + EA++L+D GV EI ++ Q+ +A+ R +GE K + DL LS++ R Sbjct: 169 LSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVDLCEQLSKLGIWTR 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G + +PYL +P+Q S RILK M R + I + Sbjct: 229 LHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQW 285 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G +++ +Q+ Sbjct: 286 REICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANDLPDQI 345 Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ- 436 E VK E R + LQ+++ +++ VG+ I V++++ +E G+ + +P + Sbjct: 346 PEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRSMADAPEIDG 402 Query: 437 SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 +V LN + GDII+V++ + L+G V Sbjct: 403 AVYLNGETQVKPGDIIRVKVENADEYDLWGTRV 435 >gi|116048839|ref|YP_792360.1| hypothetical protein PA14_52420 [Pseudomonas aeruginosa UCBPP-PA14] gi|122257946|sp|Q02I76|RIMO_PSEAB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|115584060|gb|ABJ10075.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 440 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 150/472 (31%), Positives = 228/472 (48%), Gaps = 64/472 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G I E G V+V GC+ E I P V V GPQ Y ++ Sbjct: 65 IGE-------AIAENGK--VIVTGCMG-VEEHTIRDVHPSVLAVTGPQQYEQV------- 107 Query: 144 RFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 V V K E +VD G A+L I EGC+ C+FC++P R Sbjct: 108 -----VTAVHEVVPPKTEHNPLVDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMR 162 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR + V+ EA +L+ GV E+ ++ Q+ +A W G+ + K Sbjct: 163 GKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKTDFWNGQPV---KTRMK 219 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 +L +LS + VRL Y +P + A G L+PYL +P Q S ++LK+M R Sbjct: 220 ELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAAGK---LLPYLDIPFQHASPKVLKAMKR 276 Query: 309 RHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 A+E + + I + R + P++ I S FIVGFPGET++DF+ +D + + + F+ Sbjct: 277 --PAFEDKTLARIKQWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQ 334 Query: 367 YSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 YSP G P + + LE V + VK ER + Q+ + ++ VG+ IEVLI++ Sbjct: 335 YSPVEGAPANELGLEPVPDEVKQDRWERFMAHQQAISAARLQLK---VGKEIEVLIDEVD 391 Query: 423 KEKGKLVGRSPWLQS------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ VGRS W + V ++S GD ++VRITD L+ ELV Sbjct: 392 EQGA--VGRS-WADAPEIDGNVFVDSDELKPGDKVRVRITDADEYDLWAELV 440 >gi|26553616|ref|NP_757550.1| hypothetical protein MYPE1630 [Mycoplasma penetrans HF-2] gi|26453622|dbj|BAC43954.1| conserved hypothetical protein [Mycoplasma penetrans HF-2] Length = 442 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 127/445 (28%), Positives = 228/445 (51%), Gaps = 21/445 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + + GC++N+++S + + G V AD+ ++NTC + KA K + Sbjct: 15 FAIHTLGCKVNLFESNVIRNDLLLNGLVEVPFDAQADVYIINTCSVTNKADSK-----SK 69 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARF 145 + K SR + G +VVVAGC++Q + L + +++ +G + Y + +LL ++ Sbjct: 70 LYIRKASRTNKKG--IVVVAGCMSQINKD--LMKELKIDIQIGNKYKYSIYDLLTNYSKN 125 Query: 146 GKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++++ + +++K FE+ + + K AF+ IQ+GC+ C++C++P+TRG + S Sbjct: 126 KEKILKIENLLKEKVFEK----NESISFKENTRAFIKIQDGCNFMCSYCIIPFTRGKQRS 181 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 L+ +V+E L+D G EI L G N + D +K F DLL +++EIK R+R Sbjct: 182 NDLNTIVNEVHSLVDQGYKEIVLTGVNTAGF----FDQDKNNFYDLLVAINEIKKDFRVR 237 Query: 265 YTTSHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 ++ P ++D ++ + + H+ +QSGSD +L MNRR+ +Y ++I +IR Sbjct: 238 ISSVEPFQITDEIVNLIASNPKRFCQHWHICLQSGSDNVLNKMNRRYLTSQYEELIKKIR 297 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S+ P+ ++D+IVGFP E+ D +M+ + KI + F YS R GT S ++ V Sbjct: 298 SINPNTLFTTDYIVGFPSESHQDHLDSMEFLKKIKFFDMHIFPYSKREGTKSS-TIKDVH 356 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + K ER + + S + + + +EV+ E + + G S V + S Sbjct: 357 DATKKERFKNVAAFNFATKFSILKSMLNKELEVIFEHKNENEQYYSGYSSEYCRVYVESN 416 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 I KV+I V L G +V Sbjct: 417 TPLENKIYKVKIEKVLSDGLLGTIV 441 >gi|315299417|gb|EFU58669.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 16-3] Length = 441 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 143/462 (30%), Positives = 235/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P ++A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLRAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWRKICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ +E G+ Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441 >gi|301155233|emb|CBW14698.1| predicted SAM-dependent methyltransferase [Haemophilus parainfluenzae T3T1] Length = 453 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 144/467 (30%), Positives = 235/467 (50%), Gaps = 52/467 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P FV S GC N+ DS R+ + GY V S ++ DL+++NTC + A ++ Sbjct: 13 TPNIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQESLE 71 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G ++E G V+V GC+ E ++I + P V V GP +Y + Sbjct: 72 AIGEA-------LEENGR--VIVTGCLGAKE-DQIRQVHPKVLEVSGPHSYEAV-----M 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A+ K V +++ + G A+L I EGCD CTFC++P RG Sbjct: 117 AQVHKYVPKPEHNPYTSL----VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSLRGDL 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTF-------SDL 250 SRS++QV+DEA++L D GV E+ ++ Q+ +A+ R +G G K F +DL Sbjct: 173 ESRSITQVLDEAKRLADAGVKELLVVSQDTSAYAMDTQRKEG--GVKTAFWNGMPIKNDL 230 Query: 251 LYSLSEIKGL---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 + ++ L VRL Y +P + A G +L+PYL +P+Q S +ILK+M Sbjct: 231 MTLCKQLGKLGIWVRLHYVYPYPHVDDLIPLMAEG---LLLPYLDIPLQHASPKILKAMK 287 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + I + R + PD+ + S FIVGFPGET++DF+ +D + + + FK+ Sbjct: 288 RPGKIDRTLERIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKF 347 Query: 368 SPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 SP G P + M +QV E+VK E R + LQ+++ +++ +GQ ++V++++ E Sbjct: 348 SPVEGAPATEMADQVPEDVKEERFHRFMQLQQEISAERLKQK---IGQTLDVIVDEIDDE 404 Query: 425 K--GKLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 G+ +P + +V L+ +G+ IKV IT L+G Sbjct: 405 GIIGRTKADAPEVDGLVYIENLSGTPVKVGEFIKVTITHSDEYDLWG 451 >gi|237730814|ref|ZP_04561295.1| Fe-S oxidoreductase 1 [Citrobacter sp. 30_2] gi|226906353|gb|EEH92271.1| Fe-S oxidoreductase 1 [Citrobacter sp. 30_2] Length = 435 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 138/453 (30%), Positives = 233/453 (51%), Gaps = 40/453 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ +G N Sbjct: 8 SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIGEALN- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 E G V+V GC+ A+ ++I P V + GP +Y ++ E + + Sbjct: 67 ------ENGK--VIVTGCLG-AKVDQIREVHPKVLEITGPHSYEQVLEHVHHYVPKPK-- 115 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F+ L + + G A+L I EGC+ CTFC++P RG +SR + V Sbjct: 116 ------HNPFQSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDV 168 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVR 262 + EA++L+D GV EI ++ Q+ +A+ R +GE K + DL LS++ R Sbjct: 169 LSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVDLCEQLSKLGIWTR 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G + +PYL +P+Q S RILK M R + I + Sbjct: 229 LHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQW 285 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G +++ +Q+ Sbjct: 286 REICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANDLPDQI 345 Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ- 436 E VK E R + LQ+++ +++ VG+ I V++++ +E G+ + +P + Sbjct: 346 PEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRSMADAPEIDG 402 Query: 437 SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 +V LN + GDII+V++ + L+G V Sbjct: 403 AVYLNGETKVKPGDIIRVKVENADEYDLWGTRV 435 >gi|327539767|gb|EGF26370.1| SSU ribosomal protein S12P methylthiotransferase [Rhodopirellula baltica WH47] Length = 476 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 134/427 (31%), Positives = 223/427 (52%), Gaps = 47/427 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ V S GC N+ D+ +M + GY V+S+D AD +V+NTC + A ++ + + Sbjct: 32 RYAVVSLGCPKNLVDTEQMLGRLDADGYRMVDSVDGADFVVVNTCGFIDSARDESMAAID 91 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + LK ++G VVV GC+A+ + +++L+ P ++ +VG F Sbjct: 92 EMLALK----RDGKLRNVVVTGCLAERQQDKLLQARPDIDALVG--------------VF 133 Query: 146 GKR----VVDTDYS-VEDK---FERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFC 193 G+ VVD YS ++++ F+ ++ + VT A+L I EGCD+ CTFC Sbjct: 134 GRNDIVSVVDELYSGLQEQRTIFKPAAVNPLSDAMRSAVTPRHFAYLKISEGCDRLCTFC 193 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLL 251 +P RG S+ + Q++DEA++L D+GV E+ ++ Q+ + G+D GE + LL Sbjct: 194 AIPKMRGKHFSKPIEQIIDEAKRLGDSGVREVVIVAQDTTYY---GMDRYGEP-RLNQLL 249 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L +I+ + +R +P + D LI ++PY+ +P+Q SD++LK M R+ T Sbjct: 250 KELDKIESIDWIRLMYFYPMYIDDALIDTLASAKRIVPYIDMPLQHASDKMLKRMARKTT 309 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 I+ ++RS + + + I GFPGET++DF MD V + + F YS Sbjct: 310 RSLQTDIVQKLRSRIDSLVMRTTMITGFPGETEEDFVELMDFVQESRFENLGVFTYSIEE 369 Query: 372 GTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKG 426 TP + + +VD V A R L+ LQ QQ++F ND+ VG EVLI+ E+ Sbjct: 370 DTPAARLPNRVDPEVAARRRDDLMELQ-----QQIAFDWNDSRVGGTEEVLIDAEMPEQD 424 Query: 427 KL-VGRS 432 + +GR+ Sbjct: 425 NVFIGRT 431 >gi|123967655|ref|YP_001008513.1| Fe-S oxidoreductase [Prochlorococcus marinus str. AS9601] gi|238066469|sp|A2BNP5|RIMO_PROMS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|123197765|gb|ABM69406.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. AS9601] Length = 454 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 135/455 (29%), Positives = 238/455 (52%), Gaps = 44/455 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N+ D+ M+ + +GYE ++++DA+++V+NTC E A E+ + +I N Sbjct: 22 GCEKNLVDTEHMQGLLDKEGYEVDSNINDANVVVVNTCSFIETAREES---IRKILEYTN 78 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 +G + V+VAGC+AQ +E++R P + +VG Y ++ ++L+R G+ V + Sbjct: 79 ----QGKE--VIVAGCMAQHFKDELIREIPEIKGLVGTGDYQKIAKVLDRVEQGEIVNEV 132 Query: 153 ----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ +++ R VD K A+L I EGC+ C FC++P RG + SR++ Sbjct: 133 SKIPEFIADEEMPRF--VD-----KNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRSRTIE 185 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267 +V EA+ L G+ EI L+ Q + G+ + G K + + LL LS++ +R+ Y Sbjct: 186 SIVSEAKSLAKKGIQEIILISQ-ITTNYGQDIYG-KPSLAKLLNELSKVSIPWIRIHY-- 241 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++D +I+A D ++PY LP+Q +LKSMNR A I+++IR P Sbjct: 242 AYPTGLTDEVIRAFKDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIREEIP 301 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + + IVGFPGE + F + +D+ + F +SP GT ++ +V V Sbjct: 302 SAVLRTSLIVGFPGEKKEHFEHLLQFLDRHKFDHVGVFIFSPEEGTTAFHLPNKVSLEVA 361 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440 R ++ +Q+ + + + N VG +++L+EK + +L+GRS P + V+ Sbjct: 362 EARKDNVISVQQNISKDK---NQTYVGSKMKILVEKIS-DNNELIGRSYNFAPEIDGTVI 417 Query: 441 NS-------KNHNIGDIIKVRITDVKISTLYGELV 468 S KN+ IG ++ IT LYGE++ Sbjct: 418 LSVKDKIDLKNY-IGKFVEANITFADEYDLYGEII 451 >gi|300854512|ref|YP_003779496.1| putative MiaB-like tRNA modifying enzyme [Clostridium ljungdahlii DSM 13528] gi|300434627|gb|ADK14394.1| putative MiaB-like tRNA modifying enzyme [Clostridium ljungdahlii DSM 13528] Length = 440 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 140/445 (31%), Positives = 228/445 (51%), Gaps = 30/445 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + S GC N DS M +Q Y V+ AD+I++NTC E A ++ + Sbjct: 5 RVGLISLGCDKNRLDSEVMLSNL-NQEYSLVHDPKLADVIIINTCGFIESAKQESIDTI- 62 Query: 86 RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143 L+ S+ KE + L+VV GC+AQ G+E++ P +++++G Y +L E + + Sbjct: 63 ----LEMSQYKEKFNCKLIVVTGCLAQRYGKELMELLPEIDIMLGVNDYDKLNETIRKCI 118 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R+ + DYS + E I+ TA+L I EGCD CT+C++P RG Sbjct: 119 ETDNSRIYNCDYSDSNINEGKRILTTS-----TYTAYLRIAEGCDNHCTYCIIPKIRGKY 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR++ +++E L + GV EI L+ Q+ + G + G+K +L+ +S+I + Sbjct: 174 RSRTIENIINECNDLANQGVKEIILIAQDTTRY-GIDIYGKK-MLPELIQKISKINEIEW 231 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R +P +++D +I D + Y+ +P+Q SD ILK M RR + + ID++ Sbjct: 232 IRLLYCYPEELTDEIINEISMNDKVCKYIDIPIQHISDSILKLMGRRGRKLDIIENIDKL 291 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ IAI + IVGFPGET+++F D V + + FKYS GT + M QV Sbjct: 292 RARAKGIAIRTTIIVGFPGETEENFEELKDFVSTMKFDNLGVFKYSREEGTAAAEMKNQV 351 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435 E +K+ R L+ LQK++ S N + +G +V++E GK+ GRS P + Sbjct: 352 PEEIKSAREGELMVLQKQV---MTSINKSKIGSTYKVIVE--GKKGELWYGRSYEMAPDI 406 Query: 436 QSVVL--NSKNHNIGDIIKVRITDV 458 V+ K IG ++ V+IT + Sbjct: 407 DGVIYIKCKKTLKIGTMVNVKITHI 431 >gi|296390731|ref|ZP_06880206.1| ribosomal protein S12 methylthiotransferase [Pseudomonas aeruginosa PAb1] Length = 440 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 150/472 (31%), Positives = 228/472 (48%), Gaps = 64/472 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G I E G V+V GC+ E I P V V GPQ Y ++ Sbjct: 65 IGE-------AIAENGK--VIVTGCMG-VEEHAIRDVHPSVLAVTGPQQYEQV------- 107 Query: 144 RFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 V V K E +VD G A+L I EGC+ C+FC++P R Sbjct: 108 -----VTAVHEVVPPKTEHNPLVDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMR 162 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR + V+ EA +L+ GV E+ ++ Q+ +A W G+ + K Sbjct: 163 GKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKTDFWNGQPV---KTRMK 219 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 +L +LS + VRL Y +P + A G L+PYL +P Q S ++LK+M R Sbjct: 220 ELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAGGK---LLPYLDIPFQHASPKVLKAMKR 276 Query: 309 RHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 A+E + + I + R + P++ I S FIVGFPGET++DF+ +D + + + F+ Sbjct: 277 --PAFEDKTLARIKQWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQ 334 Query: 367 YSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 YSP G P + + LE V + VK ER + Q+ + ++ VG+ IEVLI++ Sbjct: 335 YSPVEGAPANELGLEPVPDEVKQDRWERFMAHQQAISAARLQLK---VGKEIEVLIDEVD 391 Query: 423 KEKGKLVGRSPWLQS------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ VGRS W + V ++S GD ++VRITD L+ ELV Sbjct: 392 EQGA--VGRS-WADAPEIDGNVFVDSDELKPGDKVRVRITDADEYDLWAELV 440 >gi|237737741|ref|ZP_04568222.1| Fe-S oxidoreductase [Fusobacterium mortiferum ATCC 9817] gi|229419621|gb|EEO34668.1| Fe-S oxidoreductase [Fusobacterium mortiferum ATCC 9817] Length = 432 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 126/440 (28%), Positives = 234/440 (53%), Gaps = 17/440 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + GC++N Y++ +++ +GY D+AD+ ++N+C + A K + L Sbjct: 5 KRVAFYTLGCKVNQYETESIKNQLLQKGYTETAFEDEADIYIVNSCTVTSVADRKTRNML 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + + N K V+V GC AQ +E+L I + V+G + + +E Sbjct: 65 RRAKKV-NPHSK------VIVTGCYAQTNSKELLEMEDI-DYVIGNKYKKGIVNFIEDIE 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEI 203 R +D ++ F+ + + R ++ A++ IQ+GC+ FC++C +P+ RG Sbjct: 117 --NRTMDR-LKNDNIFDEYEYTEYEFATLREMSRAYVKIQDGCNNFCSYCKIPFARGRSR 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++ E KL++ G EI L+G N+ A+ G+ L+ E F DLL + ++KGL R+ Sbjct: 174 SRKKENILKEIEKLVNEGFKEIILIGINLGAY-GEDLE-EDIDFEDLLEKILQVKGLERV 231 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R + +P +SD + LMP+LH+ +QS D +LK M R++ + + + +++ Sbjct: 232 RIGSVYPDKISDRFVDMFK-YKNLMPHLHISLQSCDDTVLKMMKRKYGSDLIEERLLKLK 290 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + ++ ++D IVGFPGE+++ F+ + +L++KIG++ F+YS R T S + ++D Sbjct: 291 NSVGNMEYTADIIVGFPGESEEMFQNSYNLIEKIGFSGLHIFQYSDRENTVASRLENKID 350 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 VK ER L++ +E + + +G+ +++LIE+ G L G S V + Sbjct: 351 SKVKKERADRLEELKKEMAIIERENYIGKSLKILIEEEI--DGYLYGYSENYLRVKVKGD 408 Query: 444 NHNIGDIIKVRITDVKISTL 463 I +II+V+IT ++ L Sbjct: 409 KKMINEIIEVKITSLEKELL 428 >gi|145298336|ref|YP_001141177.1| ribosomal protein S12 methylthiotransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|238065281|sp|A4SKK7|RIMO_AERS4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|142851108|gb|ABO89429.1| Fe-S oxidoreductases family 1 [Aeromonas salmonicida subsp. salmonicida A449] Length = 442 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 152/461 (32%), Positives = 232/461 (50%), Gaps = 41/461 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC N+ DS R+ ++GY+ V S DDA+L+V+NTC + A ++ Sbjct: 7 APKVGFV-SLGCPKNLVDSERILTQLRTEGYDVVPSYDDAELVVVNTCGFIDSAVQESLE 65 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + E G V+V GC+ E + I P V + GP Y E+L Sbjct: 66 AIGEA-------LAENGK--VIVTGCLGAKENQ-IREIHPKVLEITGPHAYE---EVL-- 110 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K V + + F L G R A+L I EGC+ CTFC++P RG Sbjct: 111 GHVHKYVAKPTH---NPFTSLVPAHGVKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDL 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254 +SR + +V+ EA++L + GV EI ++ Q+ +A+ R DG K + L L Sbjct: 167 VSRPIGEVLAEAKRLKEAGVKEILVISQDTSAYGVDVKHRTGFYDGMPVKTSMVALCEEL 226 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 +++ VRL Y +P D +I D VL PYL +P+Q S RILK M R T Sbjct: 227 AKLDIWVRLHYVYPYPH--VDDVIPLMRDGKVL-PYLDIPLQHASPRILKLMKRPGTVER 283 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + I + R + P+I + S FIVGFPGET+++F+ +D +DK + FKYSP G Sbjct: 284 TLERIQKWREICPEITLRSTFIVGFPGETEEEFQMLLDFIDKAELDRVGCFKYSPVEGAK 343 Query: 375 GSNMLEQVDENVKAERLLCLQKKLR-EQQVSFNDAC--VGQIIEVLIEKHGKE--KGKLV 429 + + + V E+V+ ER Q+ + +QQVS VG+ + VLI++ +E G+ Sbjct: 344 ANELPDPVPEDVQEER---FQRFMELQQQVSIRKLARKVGKEMTVLIDEVDEEGATGRSF 400 Query: 430 GRSPWLQSVV-LNSKNH-NIGDIIKVRITDVKISTLYGELV 468 +P + +V LN + GD++KVRI + L+ L+ Sbjct: 401 ADAPEIDGLVYLNGETDLKPGDLVKVRIDEADEYDLWASLI 441 >gi|253688060|ref|YP_003017250.1| MiaB-like tRNA modifying enzyme YliG [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754638|gb|ACT12714.1| MiaB-like tRNA modifying enzyme YliG [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 442 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 140/463 (30%), Positives = 228/463 (49%), Gaps = 47/463 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDA+L+++NTC + A ++ Sbjct: 9 PRIGFV-SLGCPKNLVDSERILTELRTEGYQVVPRYDDAELVIVNTCGFIDSAVQESLEA 67 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E + I P V + GP +Y ++ + + Sbjct: 68 IGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQVLSHVHQY 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + F L + + G A+L I EGCD CTFC++P RG Sbjct: 118 --------VPKPTHNPFTSL-VPEQGVKLTPRHYAYLKISEGCDHRCTFCIIPSMRGDLD 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V+DEA++L+D GV E+ ++ Q+ +A W G+ + K + L Sbjct: 169 SRPIGSVLDEAKRLVDAGVKELLVISQDTSAYGADVKQRTGFWNGQPV---KTSMVSLCE 225 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L+ + VRL Y +P + A G + +PYL +P+Q S +ILK M R Sbjct: 226 QLASLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPKILKLMKRPGAV 282 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I R R + PD+ + S FIVGFPGET++DF+ +D + + + FK+SP G Sbjct: 283 ERTLERIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAKLDRVGCFKFSPVEG 342 Query: 373 TPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427 + + +QV E VK E R + LQ+ + Q++ +G+ + VLI++ +E G+ Sbjct: 343 AAANALPDQVPEEVKEERFHRFMQLQQAISAQRLQDK---IGREVLVLIDEIDEEGAIGR 399 Query: 428 LVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + +P + +V LN + +GDI+KV++ L+G V Sbjct: 400 SMADAPEIDGAVYLNGETGVKVGDIVKVKVEHADEYDLWGSRV 442 >gi|83592518|ref|YP_426270.1| MiaB-like tRNA modifying enzyme [Rhodospirillum rubrum ATCC 11170] gi|83575432|gb|ABC21983.1| MiaB-like tRNA modifying enzyme [Rhodospirillum rubrum ATCC 11170] Length = 441 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 139/468 (29%), Positives = 227/468 (48%), Gaps = 42/468 (8%) Query: 10 VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69 +A + +D P + ++GC++N Y+S M + G +D I++NT Sbjct: 6 LAPPTADAIDDNASPGGPRIVTFGCRLNTYESEVMREQAAKAGL--------SDAIIVNT 57 Query: 70 CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129 C + +A + + R+R +E + ++V GC AQ + + P V+ V+G Sbjct: 58 CAVTREAERQARQTIRRLR-------RENPETRLIVTGCGAQLD-PKGWGAMPEVDQVLG 109 Query: 130 ------PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183 ++Y L L+ K +VD +V + L +V G R R AF+ +Q Sbjct: 110 NEEKLKAESYRPLAGGLDLGAPEKILVDDIMTVRETA--LHLVGGFEGRAR---AFVQVQ 164 Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243 +GCD CTFC++P+ RG S + ++VD+ R L+ G E+ L G ++ A+ G L G Sbjct: 165 QGCDHRCTFCIIPFARGNSRSVPMGRIVDQIRALVAAGYREVVLTGVDITAY-GPDLPGA 223 Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 + L + L RLR ++ P ++ + L+ L+ +LHL VQ+G+D IL Sbjct: 224 PSLGQMVRRLLRAVPDLPRLRLSSLDPVEVDEDLLALVASEPRLLAHLHLSVQAGADLIL 283 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 K M RRH + + R+R++RP +A+ +D IVGFP ET++ F ++ LV++ G Sbjct: 284 KRMKRRHLRDDVIALAQRLRTLRPGMALGADIIVGFPTETEEHFAQSLALVEEAGLTHLH 343 Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 F YSPR GTP + ++ QVD+ V +R L++ + VG I VLIE+ G+ Sbjct: 344 VFPYSPRPGTPAA-LMPQVDKAVVKDRARRLREAGEAALAAHRAVLVGGIDHVLIERPGE 402 Query: 424 EKGKL---VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 G+ V P L G I+ VR+ + L GE V Sbjct: 403 GHGETFVPVSVDPALTP----------GSIVPVRLRAGEGGHLIGEAV 440 >gi|333006632|gb|EGK26131.1| RNA modification enzyme, MiaB family protein [Shigella flexneri VA-6] Length = 441 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 144/462 (31%), Positives = 234/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ +E G+ Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + NI GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGETNIKPGDILRVKVEHADEYDLWGSRV 441 >gi|227872811|ref|ZP_03991125.1| 2-methylthioadenine synthase [Oribacterium sinus F0268] gi|227841338|gb|EEJ51654.1| 2-methylthioadenine synthase [Oribacterium sinus F0268] Length = 478 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 117/402 (29%), Positives = 214/402 (53%), Gaps = 40/402 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF + + GC++N Y++ M + +G V+ ++AD+ ++NTC + A K Sbjct: 9 RFAMHNLGCKVNSYETEAMTEAILQEGARLVDFTEEADIYLINTCSVTNIADRKS----- 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R + + + + +V+ GC + + EE L+ +++++G R+ EL++ R Sbjct: 64 --RQMIHQAKQRNPEAIVIATGCYVEGKQEE-LKEDKGIDILIGNTGKGRVVELIKAYR- 119 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNR------KRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + +++ D S + F + +G Y K AF+ +Q+GC++FC +C++PY R Sbjct: 120 -EAMLENDASPMEPFSPVR-EEGEYENLFLSKPKDKSRAFVKVQDGCNQFCAYCIIPYVR 177 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS----------D 249 G SR ++E R L G E+ L G +++++ GLD E ++ Sbjct: 178 GRIRSRKEEDCLEEIRHLAKEGFQEVVLTGIHLSSY---GLDFENLSYEYASRKAETGEA 234 Query: 250 LLYSLSE---IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 LL+ +SE I G+ R+R + PR +++ + +++ + P+ HL +QSG+++ LK M Sbjct: 235 LLHLISEVGKIPGIQRIRLGSLEPRIITERFLAGLKEVEAICPHFHLSLQSGAEKTLKEM 294 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 NR +T ++++ ++ IR V P AI++D IVGFPGE ++DF+ ++ + +I + FK Sbjct: 295 NRHYTKEDFKKAVEDIRRVYPMAAITTDVIVGFPGEREEDFQESLAYLKEISFYDLHVFK 354 Query: 367 YSPRLGTPGSNMLEQVDENVKAER---LLCL----QKKLREQ 401 +S R GT M EQ+ +N+K R LL L KK RE+ Sbjct: 355 FSRRKGTKADEMKEQIPDNIKTARSKELLALALEDSKKFREK 396 >gi|163785016|ref|ZP_02179751.1| hypothetical protein HG1285_08916 [Hydrogenivirga sp. 128-5-R1-1] gi|159879716|gb|EDP73485.1| hypothetical protein HG1285_08916 [Hydrogenivirga sp. 128-5-R1-1] Length = 436 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 123/432 (28%), Positives = 224/432 (51%), Gaps = 23/432 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSFLGRIRN 89 + GC+MN +++ +E+ F +GYE + S DD AD+ V+NTC + A L + + Sbjct: 10 TLGCRMNQFETSALEEKFNEKGYE-IKSFDDVADIYVVNTCTVTNDADRTSRKVLRQAK- 67 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARFG 146 + + +VV GC AQ + EE+ + V++V+G + E++E + Sbjct: 68 ------RRNPNAVVVATGCYAQVKPEELAKIEE-VDIVIGNSHKTAVYEIVENYLNEKNQ 120 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +V + +++FE I Y G L +QEGC+ FC+FC++P+ RG S Sbjct: 121 DKVFIDNIFRQNEFETFQI-STFY---EGARPILKVQEGCNSFCSFCIIPFARGKVRSAK 176 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + ++ + + L++NG E+ L G ++ + G D ++ +LL L +I GL R+R + Sbjct: 177 IDEIEKQVKILVENGFKEVVLTGTQLSQY---GYDHKEGYLYNLLKRLIKIDGLYRVRLS 233 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + ++ + L+ + + P+ HL +QS SD++LK M R +T +Y ++++ I R Sbjct: 234 SMGINEIDEKLLDLITSEEKIAPHFHLSLQSASDKVLKDMKRNYTLSQYIKVVNEIVKRR 293 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD A+ +D I GFP ET ++F ++ +++++ +A F YS R GT ++V Sbjct: 294 PDTAVGTDIITGFPTETREEFEKSLKVIEELPFAYIHVFTYSQRDGTSAVKFGDRVHPKE 353 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 K ER L++ + F + + +EVLI G+++GK +G + V NS + N Sbjct: 354 KKERTRILREISERKNYEFRKKHLNKKLEVLI--IGEKEGKKIGLTGNYIHVRFNS-DKN 410 Query: 447 IGDIIKVRITDV 458 I + V I ++ Sbjct: 411 INQLAYVNILNI 422 >gi|32476670|ref|NP_869664.1| 2-methylthioadenine synthetase [Rhodopirellula baltica SH 1] gi|81659389|sp|Q7UK39|RIMO_RHOBA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|32447216|emb|CAD77042.1| conserved hypothetical protein-putative 2-methylthioadenine synthetase [Rhodopirellula baltica SH 1] Length = 477 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 134/427 (31%), Positives = 223/427 (52%), Gaps = 47/427 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ V S GC N+ D+ +M + GY V+S+D AD +V+NTC + A ++ + + Sbjct: 33 RYAVVSLGCPKNLVDTEQMLGRLDADGYRMVDSVDGADFVVVNTCGFIDSARDESMAAID 92 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + LK ++G VVV GC+A+ + +++L+ P ++ +VG F Sbjct: 93 EMLALK----RDGKLRNVVVTGCLAERQQDKLLQARPDIDALVG--------------VF 134 Query: 146 GKR----VVDTDYS-VEDK---FERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFC 193 G+ VVD YS ++++ F+ ++ + VT A+L I EGCD+ CTFC Sbjct: 135 GRNDIVSVVDELYSGLQEQRTIFKPAAVNPLSDAMRSAVTPRHFAYLKISEGCDRLCTFC 194 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLL 251 +P RG S+ + Q++DEA++L D+GV E+ ++ Q+ + G+D GE + LL Sbjct: 195 AIPKMRGKHFSKPIEQIIDEAKRLGDSGVREVVIVAQDTTYY---GMDRYGEP-RLNQLL 250 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L +I+ + +R +P + D LI ++PY+ +P+Q SD++LK M R+ T Sbjct: 251 KELDKIESIDWIRLMYFYPMYIDDALIDTLASARRIVPYIDMPLQHASDKMLKRMARKTT 310 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 I+ ++RS + + + I GFPGET++DF MD V + + F YS Sbjct: 311 RSLQTDIVQKLRSRIDSLVMRTTMITGFPGETEEDFVELMDFVQESRFENLGVFTYSIEE 370 Query: 372 GTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKG 426 TP + + +VD V A R L+ LQ QQ++F ND+ VG EVLI+ E+ Sbjct: 371 DTPAARLPNRVDPEVAARRRDDLMELQ-----QQIAFDWNDSRVGGTEEVLIDAEMPEQD 425 Query: 427 KL-VGRS 432 + +GR+ Sbjct: 426 NVFIGRT 432 >gi|251790001|ref|YP_003004722.1| ribosomal protein S12 methylthiotransferase [Dickeya zeae Ech1591] gi|247538622|gb|ACT07243.1| MiaB-like tRNA modifying enzyme YliG [Dickeya zeae Ech1591] Length = 467 Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 138/456 (30%), Positives = 226/456 (49%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY+ V S +DADL+++NTC + A ++ +G N Sbjct: 40 SLGCPKNLVDSERILTELRTEGYQVVPSYNDADLVIVNTCGFIDSAVQESLEAIGEALN- 98 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 E G V+V GC+ E + I P V + GP +Y ++ + + Sbjct: 99 ------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQVLKHVHHY------- 142 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L G R A+L I EGCD CTFC++P RG SR + V Sbjct: 143 -VPKPEHDPFTSLIPAQGVKLTPRHY-AYLKISEGCDHRCTFCIIPSMRGDLDSRPIGSV 200 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 +DEA++L + GV E+ ++ Q+ +A W G+ + K + L L+ + Sbjct: 201 LDEAKRLAEAGVKELLVISQDTSAYGADVKHRTGFWNGQPV---KTSMVSLCEQLATLGM 257 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P+Q S ++LK M R + I Sbjct: 258 WVRLHYVYPYPHVDDVIPLMAAGKV---LPYLDIPLQHASPKVLKLMKRPGAVERTLERI 314 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R R + PD+ + S FIVGFPGET++DF+ +D + + + F+YSP G +++ Sbjct: 315 KRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLQEAQLDRVGCFRYSPVEGAAANDLP 374 Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 + V E+VK + R + +Q+++ Q++ A VG+ ++VLI++ E G+ + +P Sbjct: 375 DHVPEDVKEDRYHRFMQVQQQISSQRLQ---AKVGRELKVLIDEVDDEGAIGRSMADAPE 431 Query: 435 LQ-SVVLN-SKNHNIGDIIKVRITDVKISTLYGELV 468 + +V LN K +GD++ V+I L+G LV Sbjct: 432 IDGAVYLNGEKRVKVGDLVTVKIEHADEYDLWGSLV 467 >gi|218548354|ref|YP_002382145.1| ribosomal protein S12 methylthiotransferase [Escherichia fergusonii ATCC 35469] gi|238065355|sp|B7LMZ9|RIMO_ESCF3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|218355895|emb|CAQ88510.1| putative AdoMet-dependent methyltransferase, UPF0004 family [Escherichia fergusonii ATCC 35469] gi|325496777|gb|EGC94636.1| ribosomal protein S12 methylthiotransferase [Escherichia fergusonii ECD227] Length = 441 Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 143/462 (30%), Positives = 232/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFYNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ E G+ Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGKEILVIIDEVDDEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGESNVKPGDIVRVKVEHADEYDLWGSRV 441 >gi|291286754|ref|YP_003503570.1| MiaB-like tRNA modifying enzyme [Denitrovibrio acetiphilus DSM 12809] gi|290883914|gb|ADD67614.1| MiaB-like tRNA modifying enzyme [Denitrovibrio acetiphilus DSM 12809] Length = 439 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 124/400 (31%), Positives = 214/400 (53%), Gaps = 28/400 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R F+ ++GC++N +S ++ + F V++ ++ADL++ NTC + E+A K +S + Sbjct: 2 RTFIYTFGCKVNQVESEKIVNEFKDYNLTSVDTANEADLLIFNTCAVTERAENKFHSMVR 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + R D+++ V GC A+ + +++ ++ ++VV T ++LE Sbjct: 62 KARGA-------NPDVIIAVTGCAAEKDKDKL--KALGADIVV---TNSGKMDILEHIVK 109 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +D+ + + E +I R AF+ IQ+GCD C +C++P RG+ +SR Sbjct: 110 KTDHLDSIFESKGFLEADNISMATRTR-----AFVKIQDGCDSNCAYCIIPSLRGLPVSR 164 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + V+ E + L+ G EI +G +V + G+ L E+ L+ + I+G R+R Sbjct: 165 ASEAVIAEVKTLVKAGYKEIVPVGIHVGKY-GQDLK-EEIDLPHLIEKIIAIEGDFRVRL 222 Query: 266 TTSHPRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 T+ +++D +I+ + + + + H+P+QSGS L MNR++TA EY ++R++ Sbjct: 223 TSIELNELTDRMIQMLAENTEKICRHYHIPLQSGSSHTLSMMNRKYTAEEYITKLNRLKE 282 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P + +D IVGFPGETDD F T+D + K G F YS R GT S M ++V Sbjct: 283 LVPGCLLGADVIVGFPGETDDHFAETLDTLKKSGLEHLHVFSYSDRSGTKASEMSDKVSG 342 Query: 385 NVKAERLLCLQKKLR--EQQVSFNDA--CVGQIIEVLIEK 420 VK+ER KKLR + V F+ A CV +I +VL +K Sbjct: 343 KVKSER----AKKLRAFAENVKFHAAEQCVDKIYKVLTQK 378 >gi|261345828|ref|ZP_05973472.1| RNA modification enzyme, MiaB-family [Providencia rustigianii DSM 4541] gi|282566317|gb|EFB71852.1| RNA modification enzyme, MiaB-family [Providencia rustigianii DSM 4541] Length = 446 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 143/468 (30%), Positives = 232/468 (49%), Gaps = 55/468 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP+ FV S GC N+ DS R+ + GY+ V S DDADL+++NTC + A ++ Sbjct: 8 VPKIGFV-SLGCPKNLVDSERILTELRTDGYQVVPSYDDADLVIVNTCGFIDSAVQESLE 66 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N E G V+V GC+ E + I P V + GP +Y Sbjct: 67 AIGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSY--------- 107 Query: 143 ARFGKRVVDTDYSVEDKFER---LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++V++ + K E LS+V + G A+L I EGC+ CTFC++P Sbjct: 108 ----EQVLNHVHHYVPKPEHDPFLSLVPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPSM 163 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG SR + V++EA++L+++GV E+ ++ Q+ +A W GK + K + Sbjct: 164 RGDLDSRPIGDVLNEAKRLVESGVKELLVISQDTSAYGVDVKHRTGFWEGKPV---KTSM 220 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 L L+ + VRL Y +P + A G + +PYL +P+Q S +ILK M Sbjct: 221 VGLCEQLASMGVWVRLHYVYPYPHVDEVIPLMAEGKV---LPYLDIPLQHASPKILKLMK 277 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + I R R + P++ + S FIVGFPGET++DF+ +D + + + FKY Sbjct: 278 RPGAVERTLERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLQEARLDRVGCFKY 337 Query: 368 SPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 SP G + + +QV E +K E R + LQ+++ Q++ VG+ + V+I++ E Sbjct: 338 SPVEGAKANELADQVSEEIKEERYHRFMQLQQEISTQRLQEK---VGRKLWVIIDEVDDE 394 Query: 425 K--GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 G+ + +P + +V + ++ GDI+ V I L+G LV Sbjct: 395 GAVGRSMADAPEIDGMVYLNGEFDVKAGDIVNVLIEHADEYDLWGSLV 442 >gi|15800587|ref|NP_286601.1| hypothetical protein Z1061 [Escherichia coli O157:H7 EDL933] gi|15830169|ref|NP_308942.1| ribosomal protein S12 methylthiotransferase [Escherichia coli O157:H7 str. Sakai] gi|16128803|ref|NP_415356.1| ribosomal protein S12 methylthiotransferase; radical SAM superfamily [Escherichia coli str. K-12 substr. MG1655] gi|82543282|ref|YP_407229.1| ribosomal protein S12 methylthiotransferase [Shigella boydii Sb227] gi|89107686|ref|AP_001466.1| predicted SAM-dependent methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|157156507|ref|YP_001462031.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E24377A] gi|157160316|ref|YP_001457634.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli HS] gi|168750019|ref|ZP_02775041.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4113] gi|168756629|ref|ZP_02781636.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4401] gi|168763315|ref|ZP_02788322.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4501] gi|168767345|ref|ZP_02792352.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4486] gi|168776376|ref|ZP_02801383.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4196] gi|168779387|ref|ZP_02804394.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4076] gi|168787056|ref|ZP_02812063.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC869] gi|168799883|ref|ZP_02824890.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC508] gi|170020808|ref|YP_001725762.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli ATCC 8739] gi|170080494|ref|YP_001729814.1| SAM-dependent methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170679937|ref|YP_001742942.1| ribosomal protein S12 methylthiotransferase [Escherichia coli SMS-3-5] gi|188491719|ref|ZP_02998989.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli 53638] gi|193064469|ref|ZP_03045550.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E22] gi|193069349|ref|ZP_03050304.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E110019] gi|194428238|ref|ZP_03060781.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B171] gi|194438397|ref|ZP_03070487.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli 101-1] gi|195936880|ref|ZP_03082262.1| SAM-dependent methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208809462|ref|ZP_03251799.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4206] gi|208815511|ref|ZP_03256690.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4045] gi|208822008|ref|ZP_03262327.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4042] gi|209397285|ref|YP_002269504.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4115] gi|209918084|ref|YP_002292168.1| ribosomal protein S12 methylthiotransferase [Escherichia coli SE11] gi|215485921|ref|YP_002328352.1| predicted SAM-dependent methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|217324506|ref|ZP_03440590.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. TW14588] gi|218553421|ref|YP_002386334.1| ribosomal protein S12 methylthiotransferase [Escherichia coli IAI1] gi|218694309|ref|YP_002401976.1| putative AdoMet-dependent methyltransferase, UPF0004 family [Escherichia coli 55989] gi|218699210|ref|YP_002406839.1| ribosomal protein S12 methylthiotransferase [Escherichia coli IAI39] gi|218704259|ref|YP_002411778.1| ribosomal protein S12 methylthiotransferase [Escherichia coli UMN026] gi|238900094|ref|YP_002925890.1| putative SAM-dependent methyltransferase [Escherichia coli BW2952] gi|253774163|ref|YP_003036994.1| ribosomal protein S12 methylthiotransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254792031|ref|YP_003076868.1| ribosomal protein S12 methylthiotransferase [Escherichia coli O157:H7 str. TW14359] gi|256021094|ref|ZP_05434959.1| predicted SAM-dependent methyltransferase [Shigella sp. D9] gi|256023569|ref|ZP_05437434.1| predicted SAM-dependent methyltransferase [Escherichia sp. 4_1_40B] gi|260843086|ref|YP_003220864.1| putative SAM-dependent methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260854127|ref|YP_003228018.1| putative SAM-dependent methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260867009|ref|YP_003233411.1| putative SAM-dependent methyltransferase [Escherichia coli O111:H- str. 11128] gi|261225485|ref|ZP_05939766.1| predicted SAM-dependent methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261258546|ref|ZP_05951079.1| putative SAM-dependent methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|293404140|ref|ZP_06648134.1| ribosomal protein S12 methylthiotransferase rimO [Escherichia coli FVEC1412] gi|293409210|ref|ZP_06652786.1| MiaB tRNA modifying enzyme YliG [Escherichia coli B354] gi|293414112|ref|ZP_06656761.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B185] gi|293433133|ref|ZP_06661561.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B088] gi|297519256|ref|ZP_06937642.1| ribosomal protein S12 methylthiotransferase [Escherichia coli OP50] gi|298379921|ref|ZP_06989526.1| ribosomal protein S12 methylthiotransferase rimO [Escherichia coli FVEC1302] gi|300817104|ref|ZP_07097323.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 107-1] gi|300823976|ref|ZP_07104098.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 119-7] gi|300895750|ref|ZP_07114343.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 198-1] gi|300907167|ref|ZP_07124830.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 84-1] gi|300916314|ref|ZP_07133061.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 115-1] gi|300924443|ref|ZP_07140413.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 182-1] gi|300929357|ref|ZP_07144830.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 187-1] gi|300939879|ref|ZP_07154514.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 21-1] gi|300947075|ref|ZP_07161296.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 116-1] gi|300957038|ref|ZP_07169284.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 175-1] gi|301020653|ref|ZP_07184726.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 69-1] gi|301027025|ref|ZP_07190406.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 196-1] gi|301303594|ref|ZP_07209716.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 124-1] gi|301325843|ref|ZP_07219276.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 78-1] gi|301646272|ref|ZP_07246163.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 146-1] gi|306812763|ref|ZP_07446956.1| putative SAM-dependent methyltransferase [Escherichia coli NC101] gi|307137463|ref|ZP_07496819.1| ribosomal protein S12 methylthiotransferase [Escherichia coli H736] gi|307314528|ref|ZP_07594131.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli W] gi|309795418|ref|ZP_07689836.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 145-7] gi|312969142|ref|ZP_07783349.1| RNA modification enzyme, MiaB family protein [Escherichia coli 2362-75] gi|312970914|ref|ZP_07785093.1| RNA modification enzyme, MiaB family protein [Escherichia coli 1827-70] gi|331641355|ref|ZP_08342490.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H736] gi|331646054|ref|ZP_08347157.1| putative Fe-S oxidoreductase family 1 [Escherichia coli M605] gi|331651848|ref|ZP_08352867.1| putative Fe-S oxidoreductase family 1 [Escherichia coli M718] gi|331662196|ref|ZP_08363119.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA143] gi|331667207|ref|ZP_08368072.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA271] gi|331676574|ref|ZP_08377270.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H591] gi|332282318|ref|ZP_08394731.1| conserved hypothetical protein [Shigella sp. D9] gi|83288204|sp|P0AEI5|RIMO_ECO57 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|83288205|sp|P0AEI4|RIMO_ECOLI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|123742019|sp|Q323V7|RIMO_SHIBS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065339|sp|A7ZJQ2|RIMO_ECO24 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065341|sp|B7LCB8|RIMO_ECO55 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065342|sp|B5YSC6|RIMO_ECO5E RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065343|sp|B7NNR8|RIMO_ECO7I RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065345|sp|B7M7B0|RIMO_ECO8A RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065346|sp|B1X7X6|RIMO_ECODH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065347|sp|A7ZY97|RIMO_ECOHS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065349|sp|B1IXD2|RIMO_ECOLC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065350|sp|B7NAI1|RIMO_ECOLU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065351|sp|B6I8F5|RIMO_ECOSE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065352|sp|B1LMD0|RIMO_ECOSM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|12513847|gb|AAG55211.1|AE005265_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|1787057|gb|AAC73922.1| ribosomal protein S12 methylthiotransferase; radical SAM superfamily [Escherichia coli str. K-12 substr. MG1655] gi|4062412|dbj|BAA35530.1| predicted SAM-dependent methyltransferase [Escherichia coli str. K12 substr. W3110] gi|13360374|dbj|BAB34338.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|81244693|gb|ABB65401.1| conserved hypothetical protein [Shigella boydii Sb227] gi|157065996|gb|ABV05251.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli HS] gi|157078537|gb|ABV18245.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E24377A] gi|169755736|gb|ACA78435.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli ATCC 8739] gi|169888329|gb|ACB02036.1| predicted SAM-dependent methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170517655|gb|ACB15833.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli SMS-3-5] gi|187768242|gb|EDU32086.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4196] gi|188015693|gb|EDU53815.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4113] gi|188486918|gb|EDU62021.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli 53638] gi|189003096|gb|EDU72082.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4076] gi|189356288|gb|EDU74707.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4401] gi|189363546|gb|EDU81965.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4486] gi|189366506|gb|EDU84922.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4501] gi|189373003|gb|EDU91419.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC869] gi|189377794|gb|EDU96210.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC508] gi|192928931|gb|EDV82544.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E22] gi|192957302|gb|EDV87750.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli E110019] gi|194413798|gb|EDX30077.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B171] gi|194422621|gb|EDX38618.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli 101-1] gi|208729263|gb|EDZ78864.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4206] gi|208732159|gb|EDZ80847.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4045] gi|208737493|gb|EDZ85176.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4042] gi|209158685|gb|ACI36118.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. EC4115] gi|209775578|gb|ACI86101.1| hypothetical protein ECs0915 [Escherichia coli] gi|209775580|gb|ACI86102.1| hypothetical protein ECs0915 [Escherichia coli] gi|209775582|gb|ACI86103.1| hypothetical protein ECs0915 [Escherichia coli] gi|209775586|gb|ACI86105.1| hypothetical protein ECs0915 [Escherichia coli] gi|209911343|dbj|BAG76417.1| conserved hypothetical protein [Escherichia coli SE11] gi|215263993|emb|CAS08334.1| predicted SAM-dependent methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|217320727|gb|EEC29151.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. TW14588] gi|218351041|emb|CAU96745.1| putative AdoMet-dependent methyltransferase, UPF0004 family [Escherichia coli 55989] gi|218360189|emb|CAQ97739.1| putative AdoMet-dependent methyltransferase, UPF0004 family [Escherichia coli IAI1] gi|218369196|emb|CAR16951.1| putative AdoMet-dependent methyltransferase, UPF0004 family [Escherichia coli IAI39] gi|218431356|emb|CAR12234.1| putative AdoMet-dependent methyltransferase, UPF0004 family [Escherichia coli UMN026] gi|238863092|gb|ACR65090.1| predicted SAM-dependent methyltransferase [Escherichia coli BW2952] gi|242376626|emb|CAQ31336.1| ribosomal protein S12 D88 methylthiotransferase [Escherichia coli BL21(DE3)] gi|253325207|gb|ACT29809.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253977033|gb|ACT42703.1| predicted SAM-dependent methyltransferase [Escherichia coli BL21(DE3)] gi|254591431|gb|ACT70792.1| predicted SAM-dependent methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|257752776|dbj|BAI24278.1| predicted SAM-dependent methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257758233|dbj|BAI29730.1| predicted SAM-dependent methyltransferase [Escherichia coli O103:H2 str. 12009] gi|257763365|dbj|BAI34860.1| predicted SAM-dependent methyltransferase [Escherichia coli O111:H- str. 11128] gi|260450018|gb|ACX40440.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli DH1] gi|281177970|dbj|BAI54300.1| conserved hypothetical protein [Escherichia coli SE15] gi|284920688|emb|CBG33751.1| radical SAM superfamily protein [Escherichia coli 042] gi|291323952|gb|EFE63374.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B088] gi|291428726|gb|EFF01751.1| ribosomal protein S12 methylthiotransferase rimO [Escherichia coli FVEC1412] gi|291434170|gb|EFF07143.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B185] gi|291469678|gb|EFF12162.1| MiaB tRNA modifying enzyme YliG [Escherichia coli B354] gi|298279619|gb|EFI21127.1| ribosomal protein S12 methylthiotransferase rimO [Escherichia coli FVEC1302] gi|299879453|gb|EFI87664.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 196-1] gi|300316178|gb|EFJ65962.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 175-1] gi|300360324|gb|EFJ76194.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 198-1] gi|300398581|gb|EFJ82119.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 69-1] gi|300401042|gb|EFJ84580.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 84-1] gi|300416403|gb|EFJ99713.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 115-1] gi|300419328|gb|EFK02639.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 182-1] gi|300453314|gb|EFK16934.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 116-1] gi|300455261|gb|EFK18754.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 21-1] gi|300462703|gb|EFK26196.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 187-1] gi|300523487|gb|EFK44556.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 119-7] gi|300530456|gb|EFK51518.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 107-1] gi|300841093|gb|EFK68853.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 124-1] gi|300847357|gb|EFK75117.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 78-1] gi|301075475|gb|EFK90281.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 146-1] gi|305853526|gb|EFM53965.1| putative SAM-dependent methyltransferase [Escherichia coli NC101] gi|306905951|gb|EFN36473.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli W] gi|308121068|gb|EFO58330.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 145-7] gi|309701113|emb|CBJ00411.1| radical SAM superfamily protein [Escherichia coli ETEC H10407] gi|310336675|gb|EFQ01842.1| RNA modification enzyme, MiaB family protein [Escherichia coli 1827-70] gi|312286544|gb|EFR14457.1| RNA modification enzyme, MiaB family protein [Escherichia coli 2362-75] gi|315060073|gb|ADT74400.1| predicted SAM-dependent methyltransferase [Escherichia coli W] gi|315135484|dbj|BAJ42643.1| ribosomal protein S12 methylthiotransferase rimO [Escherichia coli DH1] gi|315257824|gb|EFU37792.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 85-1] gi|315619839|gb|EFV00358.1| RNA modification enzyme, MiaB family protein [Escherichia coli 3431] gi|320186091|gb|EFW60835.1| hypothetical protein SGF_01691 [Shigella flexneri CDC 796-83] gi|320192686|gb|EFW67327.1| hypothetical protein ECoD_00613 [Escherichia coli O157:H7 str. EC1212] gi|320196670|gb|EFW71293.1| hypothetical protein EcoM_01211 [Escherichia coli WV_060327] gi|320199026|gb|EFW73623.1| hypothetical protein ECoL_03723 [Escherichia coli EC4100B] gi|320637701|gb|EFX07493.1| ribosomal protein S12 methylthiotransferase [Escherichia coli O157:H7 str. G5101] gi|320642825|gb|EFX12026.1| ribosomal protein S12 methylthiotransferase [Escherichia coli O157:H- str. 493-89] gi|320648282|gb|EFX16937.1| ribosomal protein S12 methylthiotransferase [Escherichia coli O157:H- str. H 2687] gi|320654119|gb|EFX22187.1| ribosomal protein S12 methylthiotransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320664213|gb|EFX31364.1| ribosomal protein S12 methylthiotransferase [Escherichia coli O157:H7 str. LSU-61] gi|323155793|gb|EFZ41962.1| RNA modification enzyme, MiaB family protein [Escherichia coli EPECa14] gi|323159657|gb|EFZ45636.1| RNA modification enzyme, MiaB family protein [Escherichia coli E128010] gi|323172246|gb|EFZ57884.1| RNA modification enzyme, MiaB family protein [Escherichia coli LT-68] gi|323175544|gb|EFZ61139.1| RNA modification enzyme, MiaB family protein [Escherichia coli 1180] gi|323185248|gb|EFZ70613.1| RNA modification enzyme, MiaB family protein [Escherichia coli 1357] gi|323379369|gb|ADX51637.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli KO11] gi|323938190|gb|EGB34450.1| MiaB tRNA modifying enzyme YliG [Escherichia coli E1520] gi|323942707|gb|EGB38872.1| MiaB tRNA modifying enzyme YliG [Escherichia coli E482] gi|323947141|gb|EGB43152.1| MiaB tRNA modifying enzyme YliG [Escherichia coli H120] gi|323962948|gb|EGB58520.1| MiaB tRNA modifying enzyme YliG [Escherichia coli H489] gi|323967270|gb|EGB62693.1| MiaB tRNA modifying enzyme YliG [Escherichia coli M863] gi|323969601|gb|EGB64889.1| MiaB tRNA modifying enzyme YliG [Escherichia coli TA007] gi|323976780|gb|EGB71868.1| MiaB tRNA modifying enzyme YliG [Escherichia coli TW10509] gi|324015967|gb|EGB85186.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 117-3] gi|324116148|gb|EGC10071.1| MiaB tRNA modifying enzyme YliG [Escherichia coli E1167] gi|326338276|gb|EGD62105.1| hypothetical protein ECF_05227 [Escherichia coli O157:H7 str. 1125] gi|326346253|gb|EGD69991.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli O157:H7 str. 1044] gi|327253622|gb|EGE65251.1| RNA modification enzyme, MiaB family protein [Escherichia coli STEC_7v] gi|330910577|gb|EGH39087.1| ribosomal protein S12p Asp88 methylthiotransferase [Escherichia coli AA86] gi|331038153|gb|EGI10373.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H736] gi|331044806|gb|EGI16933.1| putative Fe-S oxidoreductase family 1 [Escherichia coli M605] gi|331050126|gb|EGI22184.1| putative Fe-S oxidoreductase family 1 [Escherichia coli M718] gi|331060618|gb|EGI32582.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA143] gi|331065563|gb|EGI37456.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA271] gi|331075263|gb|EGI46561.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H591] gi|332088907|gb|EGI94019.1| RNA modification enzyme, MiaB family protein [Shigella boydii 5216-82] gi|332097419|gb|EGJ02399.1| RNA modification enzyme, MiaB family protein [Shigella boydii 3594-74] gi|332104670|gb|EGJ08016.1| conserved hypothetical protein [Shigella sp. D9] gi|332342168|gb|AEE55502.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli UMNK88] Length = 441 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 143/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ +E G+ Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441 >gi|26246810|ref|NP_752850.1| ribosomal protein S12 methylthiotransferase [Escherichia coli CFT073] gi|91209869|ref|YP_539855.1| ribosomal protein S12 methylthiotransferase [Escherichia coli UTI89] gi|110641037|ref|YP_668767.1| hypothetical protein ECP_0849 [Escherichia coli 536] gi|117623015|ref|YP_851928.1| hypothetical protein APECO1_1258 [Escherichia coli APEC O1] gi|191173725|ref|ZP_03035248.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli F11] gi|218557739|ref|YP_002390652.1| ribosomal protein S12 methylthiotransferase [Escherichia coli S88] gi|218688618|ref|YP_002396830.1| ribosomal protein S12 methylthiotransferase [Escherichia coli ED1a] gi|227884201|ref|ZP_04002006.1| 2-methylthioadenine synthetase [Escherichia coli 83972] gi|237707202|ref|ZP_04537683.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|300991871|ref|ZP_07179696.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 200-1] gi|300993439|ref|ZP_07180381.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 45-1] gi|301051237|ref|ZP_07198066.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 185-1] gi|331656857|ref|ZP_08357819.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA206] gi|331682343|ref|ZP_08382962.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H299] gi|81477710|sp|Q8FJK5|RIMO_ECOL6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|122424474|sp|Q1RE90|RIMO_ECOUT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|123344201|sp|Q0TJL3|RIMO_ECOL5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065340|sp|B7MGU2|RIMO_ECO45 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065344|sp|B7MQT8|RIMO_ECO81 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065348|sp|A1A974|RIMO_ECOK1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|26107209|gb|AAN79393.1|AE016757_297 Hypothetical protein yliG [Escherichia coli CFT073] gi|91071443|gb|ABE06324.1| hypothetical protein YliG [Escherichia coli UTI89] gi|110342629|gb|ABG68866.1| hypothetical protein YliG [Escherichia coli 536] gi|115512139|gb|ABJ00214.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|190905975|gb|EDV65591.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli F11] gi|218364508|emb|CAR02190.1| putative AdoMet-dependent methyltransferase, UPF0004 family [Escherichia coli S88] gi|218426182|emb|CAR07004.1| putative AdoMet-dependent methyltransferase, UPF0004 family [Escherichia coli ED1a] gi|222032564|emb|CAP75303.1| UPF0004 protein yliG [Escherichia coli LF82] gi|226898412|gb|EEH84671.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|227838953|gb|EEJ49419.1| 2-methylthioadenine synthetase [Escherichia coli 83972] gi|294494144|gb|ADE92900.1| ribosomal protein S12 methylthiotransferase RimO [Escherichia coli IHE3034] gi|300297144|gb|EFJ53529.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 185-1] gi|300305481|gb|EFJ60001.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 200-1] gi|300406553|gb|EFJ90091.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 45-1] gi|307552678|gb|ADN45453.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli ABU 83972] gi|307627756|gb|ADN72060.1| ribosomal protein S12 methylthiotransferase [Escherichia coli UM146] gi|312945352|gb|ADR26179.1| putative AdoMet-dependent methyltransferase, UPF0004 family protein [Escherichia coli O83:H1 str. NRG 857C] gi|315287333|gb|EFU46744.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 110-3] gi|315292510|gb|EFU51862.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli MS 153-1] gi|323953504|gb|EGB49370.1| MiaB tRNA modifying enzyme YliG [Escherichia coli H252] gi|323958124|gb|EGB53833.1| MiaB tRNA modifying enzyme YliG [Escherichia coli H263] gi|324009731|gb|EGB78950.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 57-2] gi|324013058|gb|EGB82277.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Escherichia coli MS 60-1] gi|331055105|gb|EGI27114.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA206] gi|331079974|gb|EGI51153.1| putative Fe-S oxidoreductase family 1 [Escherichia coli H299] Length = 441 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 143/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWRKICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ +E G+ Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441 >gi|113461587|ref|YP_719656.1| ribosomal protein S12 methylthiotransferase [Haemophilus somnus 129PT] gi|123327372|sp|Q0I4D9|RIMO_HAES1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|112823630|gb|ABI25719.1| SSU ribosomal protein S12P methylthiotransferase [Haemophilus somnus 129PT] Length = 443 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 137/461 (29%), Positives = 224/461 (48%), Gaps = 52/461 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ S GY ++S + ADL+++NTC + A ++ +G L Sbjct: 11 SLGCPKNLVDSERILTELRSDGYNIISSYEGADLVIVNTCGFIDSAVQESLESIGE--AL 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N+ V+V GC+ E + I P V + GP +Y + K V Sbjct: 69 ENNG-------KVIVTGCLGAKENQ-IREIHPQVLEITGPHSYEAV-----MKHVHKYVP 115 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +YS + G A+L I EGCD CTFC++P RG SRS+ + Sbjct: 116 KPEYSPYTSL----VPKHGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSIVHI 171 Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255 +DEA++L+D GV EI ++ Q+ +A W G + + T + L SL Sbjct: 172 LDEAKRLVDAGVKEILVVSQDTSAYALDKKKENASKTVFWNGMPIKNDLITLCEKLGSLG 231 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 VRL Y +P + + A G + +PYL +P+Q S +ILK M R + Sbjct: 232 ---AWVRLHYVYPYPHVDNLIPLMAEGKI---LPYLDIPLQHASPKILKMMKRPGSIERT 285 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + I + R + PD+ + S FIVGFPGET++DF+ +D + + + FK+SP G Sbjct: 286 LERIKKWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLQEAQLDRVGCFKFSPVEGAVA 345 Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430 ++M +Q+ E +K E R + LQ+K+ +++ +G+ + V+I++ +E G+ + Sbjct: 346 TDMEDQIPEEIKEERFHRFMQLQQKISAERLRQK---IGRTLPVIIDEIDEEGIIGRTMA 402 Query: 431 RSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGEL 467 +P + VV + +G II V IT+ L+GE+ Sbjct: 403 DAPEIDGVVYVDNFSKVEVKLGQIINVTITNADEYDLWGEI 443 >gi|312622756|ref|YP_004024369.1| miab-like tRNA modifying enzyme ylig [Caldicellulosiruptor kronotskyensis 2002] gi|312203223|gb|ADQ46550.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor kronotskyensis 2002] Length = 440 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 136/453 (30%), Positives = 230/453 (50%), Gaps = 35/453 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M G+E ++ +DAD+IV+NTC A ++ + + Sbjct: 8 SLGCNKNLVDSEIMMGACVKAGFEITSNAEDADVIVVNTCGFINDAKQESIDTILDMAEY 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 KN + K ++V GC+ Q +EIL + P ++ ++G + +LPE+++ GK+ + Sbjct: 68 KNKKCK-----FLIVTGCLTQRYKDEILEQMPEIDAILGVKEMLKLPEVIKDLYEGKQKI 122 Query: 151 DTDYSVEDKFERLS-----IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + F LS I Y A++ I EGC+ C++C +P RG SR Sbjct: 123 KV-FDDTSSFVYLSSMPRMIATPSY------YAYIKIAEGCNNRCSYCSIPLIRGKYTSR 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +V EA++L + G EI L Q+ + G L G+K + LL L +I+ + +R+ Sbjct: 176 PIEDIVKEAKELAEKGYKEIVLTAQDTTKY-GLDLYGKKMLHA-LLEELEKIEKIKWIRF 233 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 S+P D+ + LI+ ++ Y +P+Q +DRILK MNR+ T +++I++IR Sbjct: 234 LYSYPEDVDESLIEVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRS 293 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 ++ I + +VGFP ETD++F + + + +F YS GT S L Q+D+ Sbjct: 294 FDEVIIRTTVLVGFPTETDEEFEELCSFIKWAEFDRLGAFMYSQEEGTLASQ-LPQIDDE 352 Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWL------ 435 VK R +L +Q+K+ ++Q N VG+ EV+IE K+K +GRS + Sbjct: 353 VKQRRYENILNIQRKISKRQ---NKKRVGREYEVVIE--AKDKNNFYIGRSQFEAPEVDG 407 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +V + K G + V+I D L GE++ Sbjct: 408 KVLVFSQKKLTAGQFVNVKILDAFEYDLVGEII 440 >gi|291528906|emb|CBK94492.1| SSU ribosomal protein S12P methylthiotransferase [Eubacterium rectale M104/1] Length = 441 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 136/455 (29%), Positives = 228/455 (50%), Gaps = 28/455 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + S GC N+ DS M M + G E + AD+I++N+C A E+ + + Sbjct: 2 KLLFISLGCDKNLVDSEYMIGMLANDGIEMTDDETQADIIIVNSCCFIGDAKEESINTI- 60 Query: 86 RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY----YRLPELL 140 L+ ++ KE G ++V GC+AQ +EI + P V+ ++G +Y + E L Sbjct: 61 ----LEMAQYKETGKCKSLIVTGCLAQRYKDEIFKEIPEVDAILGTNSYDTIVEAVHETL 116 Query: 141 ERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 E+ R+ ++ S++ K IV G G A+L I EGC+K CT+CV+P R Sbjct: 117 EKHRYSNLHTLEGLPSIKTK----RIVTTG-----GHFAYLKIAEGCNKNCTYCVIPSVR 167 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G S + ++++A+ L++ G E+ L+ Q + G L GEK + LL L++I G Sbjct: 168 GRYRSVPMEDLIEQAKNLVEQGAKELILVAQETTLY-GVDLYGEK-SLHKLLDELNKISG 225 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L +R +P ++ D LI++ + + YL +P+Q +D IL+ M R+ T E + I Sbjct: 226 LFWIRIMYCYPEEIYDELIESMIKDEKVCHYLDMPIQHCNDDILRRMGRKTTKAELMERI 285 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +R PDI + + I GFPGET D+ M V+ + + + +F YSP GT + M Sbjct: 286 RMLRERIPDITLRTTLICGFPGETQDNHEELMQFVNDMEFDRLGAFTYSPEEGTKAAAMP 345 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435 +Q+DE++K + + + E N+ G+ + V IE ++ +GR+ P + Sbjct: 346 DQIDEDIKTDWQADVMELEEEVIFDKNETLKGKELYVFIEGKVADENAYIGRTYRDAPNV 405 Query: 436 QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + + + + GDI KV +T L GELV Sbjct: 406 DGYIFINTDETLMTGDICKVMVTGAYEYDLIGELV 440 >gi|29840285|ref|NP_829391.1| MiaB-like tRNA modifying enzyme YliG [Chlamydophila caviae GPIC] gi|81584463|sp|Q823A0|RIMO_CHLCV RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|29834633|gb|AAP05269.1| MiaB-like tRNA modifying enzyme YliG [Chlamydophila caviae GPIC] Length = 460 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 119/409 (29%), Positives = 204/409 (49%), Gaps = 20/409 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + GYE ++++AD ++LNTC + A ++ +L RI Sbjct: 22 SLGCSRNLVDSEVMLGILLKAGYEATETLEEADYLILNTCAFLKAARDESKDYLQRIIKA 81 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K K +++ GC+ EE+ P ++ V+G + +E G+++ Sbjct: 82 KKESAK------IILTGCMVSKHKEELKPWLPYIHYVLGSGDVEHILSAIESKEAGEKLT 135 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y + R Y A+L I EGC K C FC++P +G S+SL Q+ Sbjct: 136 SKSYLEMGEIPRKLSTPKHY-------AYLKIAEGCRKRCAFCIIPTIKGGLRSKSLDQI 188 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLRYTTSH 269 + E R L+ GV EI L+ Q++ + GK L + K +L + + G +R + Sbjct: 189 IKEFRLLLKMGVKEIILIAQDLGDY-GKDLSADRKSCLDSVLKEMLKEPGDYWIRMLYLY 247 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P ++ D +I L+PY+ +P+Q ++R+LKSM R + + ++ ++R+ P I Sbjct: 248 PDEVDDTIIDLMESDPRLLPYVDIPLQHINNRVLKSMLRTTSKEQILDLLTKLRTRIPHI 307 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 I S FIVGFPGETD++F+ +D V + F YS G+ +NM +Q+ ++VK++ Sbjct: 308 YIRSSFIVGFPGETDEEFQDLVDFVSEGWIDNLGIFSYSQEEGSVAANMADQISQSVKSK 367 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSP 433 RL L + ++ N VGQI+E +I+ + + + G++P Sbjct: 368 RLKILSQTQKKNVEKHNKQLVGQIVEAVIDGYHPDSELLLTARFYGQAP 416 >gi|170718739|ref|YP_001783927.1| ribosomal protein S12 methylthiotransferase [Haemophilus somnus 2336] gi|238066256|sp|B0US28|RIMO_HAES2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|168826868|gb|ACA32239.1| MiaB-like tRNA modifying enzyme YliG [Haemophilus somnus 2336] Length = 443 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 137/461 (29%), Positives = 224/461 (48%), Gaps = 52/461 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ S GY ++S + ADL+++NTC + A ++ +G L Sbjct: 11 SLGCPKNLVDSERILTELRSDGYNIISSYEGADLVIVNTCGFIDSAVQESLESIGE--AL 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N+ V+V GC+ E + I P V + GP +Y + K V Sbjct: 69 ENNG-------KVIVTGCLGAKENQ-IREIHPQVLEITGPHSYEAV-----MKHVHKYVP 115 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +YS + G A+L I EGCD CTFC++P RG SRS+ + Sbjct: 116 KPEYSPYTSL----VPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSIVHI 171 Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255 +DEA++L+D GV EI ++ Q+ +A W G + + T + L SL Sbjct: 172 LDEAKRLVDAGVKEILVVSQDTSAYALDKKKENASKTVFWNGMPIKNDLITLCEKLGSLG 231 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 VRL Y +P + + A G + +PYL +P+Q S +ILK M R + Sbjct: 232 ---AWVRLHYVYPYPHVDNLIPLMAEGKI---LPYLDIPLQHASPKILKMMKRPGSIERT 285 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + I + R + PD+ + S FIVGFPGET++DF+ +D + + + FK+SP G Sbjct: 286 LERIKKWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLQEAQLDRVGCFKFSPVEGAVA 345 Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430 ++M +Q+ E +K E R + LQ+K+ +++ +G+ + V+I++ +E G+ + Sbjct: 346 TDMEDQIPEEIKEERFHRFMQLQQKISAERLRQK---IGRTLSVIIDEIDEEGIIGRTMA 402 Query: 431 RSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGEL 467 +P + VV + +G II V IT+ L+GE+ Sbjct: 403 DAPEIDGVVYVDNFSKVEVKLGQIINVTITNADEYDLWGEI 443 >gi|313206267|ref|YP_004045444.1| miab-like tRNA modifying enzyme [Riemerella anatipestifer DSM 15868] gi|312445583|gb|ADQ81938.1| MiaB-like tRNA modifying enzyme [Riemerella anatipestifer DSM 15868] gi|315023051|gb|EFT36064.1| MiaB family protein, possibly involved in tRNA or rRNA modification [Riemerella anatipestifer RA-YM] gi|325336291|gb|ADZ12565.1| 2-methylthioadenine synthetase [Riemerella anatipestifer RA-GD] Length = 448 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 131/422 (31%), Positives = 215/422 (50%), Gaps = 28/422 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + GY++VN D AD+ V+NTC + E A + + R Sbjct: 12 TLGCKLNFAETSTIARQLSDAGYQKVNFDDRADVYVINTCSVTENADRECKIHVKRA--- 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFGKR 148 +K + LVVV GC AQ + EEI + V++V+G + + + LE + Sbjct: 69 ----MKANPEGLVVVVGCYAQLKPEEISKIEG-VDLVLGAKEKFNILSYLEDLEKAHNEG 123 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 +V +S E E G Y+ AFL +Q+GCD CT+C +P RGI S ++ Sbjct: 124 IV---HSCE--IEEADFFIGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDTIE 178 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLRY 265 V+ A+++ + EI L G N+ + GKG G K TF DL+ L +++G+ R+R Sbjct: 179 NVIKNAQEIATKDIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLDLITELDKVEGIERIRI 237 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ P + + I+ +P+ H+P+QSGSD +LK M RR+ YR ID I+SV Sbjct: 238 SSIEPNLLKNESIELVAQSKRFVPHFHIPLQSGSDELLKRMKRRYLTKLYRDRIDTIKSV 297 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ AI D IVGFPGET++ F T ++++ + F YS R T M V + Sbjct: 298 MPNAAIGVDVIVGFPGETEERFLETYHFLNELPISYLHIFTYSERENTEAVAMNGVVPIS 357 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPWLQS 437 + +R L+ +++++F + +G+ + +L E H + G + G + P+ QS Sbjct: 358 ERKKRNKMLRILSEKKKMAFYQSQLGKTLPILWE-HENKDGMMFGFTENYVRVKKPFDQS 416 Query: 438 VV 439 V Sbjct: 417 SV 418 >gi|317497456|ref|ZP_07955776.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium 5_1_63FAA] gi|316895242|gb|EFV17404.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium 5_1_63FAA] Length = 440 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 128/446 (28%), Positives = 229/446 (51%), Gaps = 33/446 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + + GC++N Y++ M M G V+ + AD+ ++NTC + A K L Sbjct: 6 KRAAIVTLGCKVNQYETDAMYGMLKEAGVTMVDPKEAADIYIVNTCSVTNMAERKSRQML 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + K+ D++VV GC AQ G+E L + +++++G L +LE Sbjct: 66 HRAK-------KKNLDVVVVAVGCYAQV-GKEELSKDTNIDLIIGNNKKKDLIHILEE-H 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNR----------KRGVTAFLTIQEGCDKFCTFCV 194 G++ E E + ++D +++ K A++ +Q+GC++FC++C+ Sbjct: 117 MGEK--------ESAAESIEVIDIAHDQEYESLHVEQLKEHTRAYIKVQDGCNQFCSYCI 168 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 +PY RG SR + +V++E L +G E + G +V ++ G D T +DLL + Sbjct: 169 IPYARGRVRSRKMEEVLEEITNLTKHGCQEFVITGIHVTSY---GKDLGDVTLTDLLEEI 225 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 ++I + R+R + P ++ + ++ P+ HL +QSG D +LK MNR++T + Sbjct: 226 AKIPEVKRIRLGSLEPGFITKDTLDRLSKMESFCPHFHLSLQSGCDSVLKRMNRKYTTQD 285 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 R+ IR A+++D IVGFPGET+++F T +++I + FKYS R GT Sbjct: 286 IREKCKAIREHFQYPALTTDIIVGFPGETEEEFEETRKFLEEIDLYEMHVFKYSIRKGTK 345 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRS 432 ++M Q+++ +KA+R L + ++ Q F +G + EVLIE+ HGK+ G + Sbjct: 346 AADMKPQINDQIKAKRSNVLLEMSKQHQKEFETKQLGMVKEVLIEEKMHGKDH-YYTGHT 404 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDV 458 V L S+ I+KV++ + Sbjct: 405 KEYIKVALYSEEPLENKIVKVKLRQI 430 >gi|119897316|ref|YP_932529.1| ribosomal protein S12 methylthiotransferase [Azoarcus sp. BH72] gi|238065290|sp|A1K487|RIMO_AZOSB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|119669729|emb|CAL93642.1| hypothetical protein azo1025 [Azoarcus sp. BH72] Length = 443 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 145/466 (31%), Positives = 223/466 (47%), Gaps = 50/466 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP+ FV S GC DS + ++GYE S D ADL+V+NTC + A E+ Sbjct: 9 VPRVGFV-SLGCPKATSDSEHILTRLRAEGYEISGSYDAADLVVVNTCGFIDAAVEESLD 67 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +N R V+V GC+ A+ + IL P V V GP + + + R Sbjct: 68 AIGEALA-ENGR--------VIVTGCLG-AKDDVILAAHPQVLAVTGPHATEEVMQAVHR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K D F L + G A+L I EGC+ CTFC++P RG Sbjct: 118 -HLPKP--------HDPFSDL-VPPQGIRLTPQHYAYLKISEGCNHRCTFCIIPSMRGDL 167 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR + V+ EA L D GV E+ ++ Q+ +A W GK + K DL Sbjct: 168 VSRPIHDVMREAEALADAGVKELLVISQDTSAYGVDVKYRTGFWGGKPV---KTRLYDLA 224 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L E+ +R+ Y +P + A G + +PYL +P Q S RILK+M R Sbjct: 225 NALGELGIWIRMHYVYPYPSVDDLIPLMAEGKI---LPYLDVPFQHASPRILKAMKRPAN 281 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 A + + + R + PD+ I S FI GFPGET++DF + ++ + +F YSP Sbjct: 282 AENVLERVRKWREICPDLTIRSTFITGFPGETEEDFEQLLQFLEAAQLDRVGAFAYSPVE 341 Query: 372 GTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 G +++ + V + V+ E RL+ Q+ + Q++ +A +G+ + VL++ E+G L Sbjct: 342 GAAANDLPDAVPDEVREERRARLMDFQEDISTQRL---EAKIGREMTVLVDD-VDEEGAL 397 Query: 429 V---GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 G +P + +V+ + GD ++VRITD I LY E VV Sbjct: 398 ARSPGDAPEIDGLVVIPDGEGLAPGDFVRVRITDCDIHDLYAERVV 443 >gi|239833929|ref|ZP_04682257.1| MiaB-like tRNA modifying enzyme YliG [Ochrobactrum intermedium LMG 3301] gi|239821992|gb|EEQ93561.1| MiaB-like tRNA modifying enzyme YliG [Ochrobactrum intermedium LMG 3301] Length = 456 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 152/464 (32%), Positives = 225/464 (48%), Gaps = 47/464 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ S+GYE D ADL+++NTC + A ++ Sbjct: 22 APRVSFV-SLGCPKALVDSERIITSLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLD 80 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N E G V+V GC+ AE E I +R P V + GPQ Y + + Sbjct: 81 AIGLALN-------ENGK--VIVTGCLG-AEPEVIRQRHPNVLAITGPQAYESVMSAVHE 130 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D F L G R A+L I EGC C+FC++P RG Sbjct: 131 AA---------PPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDL 180 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251 +SR + QV+ EA KL++ GV EI ++ Q+ +A+ GLD + + F DL Sbjct: 181 VSRPIDQVLREAEKLVNAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDLS 237 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L E+ VR+ Y +P + A G + +PYL +P Q S +LK+M R Sbjct: 238 RELGEMGVWVRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPAVLKNMRRPAH 294 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + + I R PD+A+ S FIVG+PGET++DF+ +D +D+ +A FKY P Sbjct: 295 QEKTSRRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKYEPVK 354 Query: 372 GTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLI-EKHGK-EKG 426 G +++ LEQV E +K R K +QQ+S N VG+ + V+I E +G KG Sbjct: 355 GAKANDLGLEQVPEEIKEARWHRFMAK--QQQISTNLLKKKVGKRLPVIIDESNGTVAKG 412 Query: 427 KLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + +P + SV + S+ +GDI+ V+I L+G V Sbjct: 413 RTRYDAPEIDGSVHIQSRRPLRVGDIVTVKIEASDAYDLHGMAV 456 >gi|304392646|ref|ZP_07374586.1| hypothetical protein R2A130_2246 [Ahrensia sp. R2A130] gi|303295276|gb|EFL89636.1| hypothetical protein R2A130_2246 [Ahrensia sp. R2A130] Length = 434 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 127/397 (31%), Positives = 199/397 (50%), Gaps = 26/397 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y++ ME + G + D +V+NTC + + A + + R Sbjct: 10 VVNFGCRLNTYEAAVMEREARAAGLAEL----DGGAVVINTCAVTQSAVADARHAIRKAR 65 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142 +E D ++V+GC AQ E + V++V+G + +Y LP+ Sbjct: 66 -------RERPDARIIVSGCAAQTEAA-TFEQMDEVDLVLGNEEKLHANSYRALPDFGVN 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 RV D + V++ + VD R R AF+ +Q GCD CTFC++PY RG Sbjct: 118 QFEKVRVADI-FDVQEAASHM--VDAIDGRSR---AFVQVQNGCDHRCTFCIIPYGRGNS 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S VV++ ++L+ NG E L G ++ +W G L G + L ++ L R Sbjct: 172 RSVPAGGVVEQVKRLVGNGYKEAVLTGVDLTSW-GCDLPGAPKLGRLVQAILKQVPDLTR 230 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ + L++A G LMP+LHL +QSG D ILK M RRH + + + + Sbjct: 231 LRLSSIDSIEVDEPLMEALGSEQRLMPHLHLSLQSGDDMILKRMKRRHLRDDTIRFCEDV 290 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+VRPD+ +D I GFP ETD F +M +VD+ G F YSPR GTP + M V Sbjct: 291 RAVRPDVMFGADIIAGFPTETDAMFDNSMRIVDEAGLTHLHVFPYSPRTGTPAAKM-PPV 349 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 D R L++K E+ ++ + VG +VL+E Sbjct: 350 DGATIKRRAKALREKGSERMNAYLASRVGTTAQVLME 386 >gi|320177831|gb|EFW52817.1| hypothetical protein SGB_05069 [Shigella boydii ATCC 9905] Length = 441 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 143/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRIGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ +E G+ Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441 >gi|213962512|ref|ZP_03390774.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] gi|213954838|gb|EEB66158.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] Length = 435 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 127/426 (29%), Positives = 211/426 (49%), Gaps = 37/426 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F GY RV+ D AD+ V+NTC + E A + + + + Sbjct: 8 TLGCKLNFAETSTIARSFEEDGYIRVDFDDPADIYVINTCSVTENADK-------QFKQI 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-------ERA 143 +K + GC AQ + EE L V++V+G + + + + + E Sbjct: 61 VRKALKTNPKAFLAAVGCYAQLKPEE-LASVDGVDLVLGAKEKFNITQYIDDLTKNNEGI 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + +TD+ V G Y+ AFL +Q+GCD CT+C +P RGI Sbjct: 120 VHSCEISETDFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPMARGISR 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260 S ++ ++ A+K+ D G+ EI L G N+ + GKG G K TF +L+ +L +++G+ Sbjct: 169 SDTIENILSNAKKISDKGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVQALDKVEGI 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ P + D I +P+ H+P+QSGS+ ILK M RR+ Y + Sbjct: 228 ERLRISSIEPNLIKDETIDFIAQSKSFVPHFHIPLQSGSNEILKKMKRRYLRELYVSRVA 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +IR V PD I D IVGFPGETD+ F T ++++ + F YS R T M Sbjct: 288 KIREVMPDACIGVDVIVGFPGETDEHFLETYHFLNELDISYLHVFTYSERDNTEAVLMEG 347 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRSP 433 V + V+A+R L+ +++ +F ++ +G+ VL E HG + + ++P Sbjct: 348 VVPDAVRAKRSKMLRGLSVKKRNAFYESQLGKEKTVLFESDNKQGYIHGFTENYVKVKAP 407 Query: 434 WLQSVV 439 W ++V Sbjct: 408 WDPALV 413 >gi|313891928|ref|ZP_07825529.1| ribosomal protein S12 methylthiotransferase RimO [Dialister microaerophilus UPII 345-E] gi|313119571|gb|EFR42762.1| ribosomal protein S12 methylthiotransferase RimO [Dialister microaerophilus UPII 345-E] Length = 448 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 127/443 (28%), Positives = 227/443 (51%), Gaps = 32/443 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M + + GYE N + +A +I++NTC + A ++ + I N Sbjct: 10 SLGCSKNLVDTEMMVGILQNAGYELTNDLSEAHVIIVNTCTFIDPAKQESIETVLEIANY 69 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--RFGKR 148 K K G +V AGC+ Q E + + P +++ +G ++ + + ++++ + ++ Sbjct: 70 K----KTGKCERLVAAGCLTQQYKEALAKEIPEIDIFIGTDSWRNILKAVQKSYEKENEK 125 Query: 149 VVD---TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + T + E+ R + Y +++ I EGC+K CTFC +P+ RG SR Sbjct: 126 IYEFNCTPCASEELIPR-KLTTPSY------MSYIKISEGCNKGCTFCYIPFVRGPMRSR 178 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++S ++ E R L GV E L+ Q+++ + DG LL L +I + +R Sbjct: 179 TISSILSEVRNLAKQGVREFNLIAQDLSCYGQDLRDGTSLIL--LLKQLVKIPEVKWIRL 236 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + +D L+ + Y+ +P+Q SD +LK MNR+ T+ +++++IR+ Sbjct: 237 FYLYPTNFNDELLDLISKERKICKYIDIPLQHISDNVLKRMNRKDTSESILKLLNKIRNN 296 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P I I + +VGFPGET+ DF + + KI + +FK+SP+ GT + M Q+ E+ Sbjct: 297 IPYITIRTTLMVGFPGETESDFEDLCEFIKKIKFDNMGAFKFSPQEGTAAALMQNQISED 356 Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWL----- 435 VK +R L+ +Q + E+ ND +G+ EVLIE K+ KL+ GR+ + Sbjct: 357 VKEKRYDKLMSIQAGISEEN---NDLLIGKEAEVLIEDIIKDGEKLIAKGRTSFQAPDVD 413 Query: 436 -QSVVLNSKNHNIGDIIKVRITD 457 + + N + GD +K +I D Sbjct: 414 GNTYIYNFGDACPGDFVKTKIID 436 >gi|288931237|ref|YP_003435297.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642] gi|288893485|gb|ADC65022.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642] Length = 422 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 138/447 (30%), Positives = 234/447 (52%), Gaps = 33/447 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGC MN DS M + S+ Y +S ++AD++++NTC + K+ L Sbjct: 2 KVYIETYGCTMNQADSDIMRGLL-SREYAFADSAEEADVVIVNTCGVIGFTERKI---LR 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI +K G V+ AGC+A+ +R I + +V P +R+ E ++ Sbjct: 58 RIEEIK------GMGKKVIAAGCLARIA----RKRLKIADALVSPDNVHRINEAVKAVLN 107 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNR-KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+RV + S DK E + G R K A ++I EGC C++C RG S Sbjct: 108 GERVEIINVSRVDKAE----ISGVKCRLKENAIAIVSISEGCLGNCSYCATKIARGRLRS 163 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S+ ++V+E +K+++ G EI L Q+ A+ + KG DLL +SEI+G R+ Sbjct: 164 FSIEKIVEEVKKVVEMGYKEIQLTSQDTGAYGKDKGY-----RLPDLLEKISEIEGDFRV 218 Query: 264 RYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R +P+ ++ D LI+A + + +LHLPVQSG +++L M R HT ++ +++ Sbjct: 219 RVGMMNPQHAMEILDDLIEAFKS-EKIYKFLHLPVQSGDNKVLMDMRRGHTVEDFEEVVS 277 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R D+ +S+D IVGFP E+++ F T++L+ ++ ++SPR GT + L+ Sbjct: 278 AFRKAFDDVLLSTDVIVGFPTESEESFEKTVELIKRVKPDIVNITRFSPREGTLAAK-LK 336 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 + + +K ER L K E + N VG+ + VL+ K GK + L+ R+ + VVL Sbjct: 337 DIPDWIKKERSRKLTKICEEIGLENNLKFVGKKLRVLVTKRGKNE-TLLARADSYRPVVL 395 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467 + IG+ + ++ D K + L GEL Sbjct: 396 --EEGTIGEFYRAKVVDAKFNYLVGEL 420 >gi|117617471|ref|YP_855900.1| hypothetical protein AHA_1361 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|238065280|sp|A0KHZ9|RIMO_AERHH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|117558878|gb|ABK35826.1| conserved hypothetical protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 442 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 148/461 (32%), Positives = 228/461 (49%), Gaps = 41/461 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC N+ DS R+ ++GY+ V S DDA+++V+NTC + A ++ Sbjct: 7 APKVGFV-SLGCPKNLVDSERILTQLRTEGYDVVPSYDDAEVVVVNTCGFIDSAVQESLE 65 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + E G V+V GC+ E + I P V + GP Y + Sbjct: 66 AIGEA-------LAENGK--VIVTGCLGAKENQ-IREIHPKVLEITGPHAYEEV------ 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G + + F L G R A+L I EGC+ CTFC++P RG Sbjct: 110 --LGHVHKYVEKPTHNPFTSLVPAQGVKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDL 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254 +SR + +V+ EA++L + GV EI ++ Q+ +A+ R DG K + L L Sbjct: 167 VSRPIGEVLAEAKRLKEAGVKEILVISQDTSAYGVDVKHRTGFYDGMPVKTSMVALCEEL 226 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 +++ VRL Y +P D +I D VL PYL +P+Q S RILK M R T Sbjct: 227 AKLGMWVRLHYVYPYPH--VDDVIPLMRDGKVL-PYLDIPLQHASPRILKLMKRPGTVER 283 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + I + R + P+I + S FIVGFPGET+++F+ +D +DK + FKYSP G Sbjct: 284 TLERIQKWREICPEITLRSTFIVGFPGETEEEFQMLLDFIDKAELDRVGCFKYSPVEGAK 343 Query: 375 GSNMLEQVDENVKAERLLCLQKKLR-EQQVSFNDAC--VGQIIEVLIEKHGKE--KGKLV 429 + + + V E V+ ER Q+ + +QQVS VG+ + VLI++ +E G+ Sbjct: 344 ANELPDPVPEEVQEER---FQRFMELQQQVSIRKLARKVGKEMLVLIDEVDEEGATGRSA 400 Query: 430 GRSPWLQSVV-LNSKNH-NIGDIIKVRITDVKISTLYGELV 468 +P + +V LN + GD++KVRI + L+ L+ Sbjct: 401 ADAPEIDGLVYLNGETGLKPGDMVKVRIDEADEYDLWASLI 441 >gi|254160912|ref|YP_003044020.1| ribosomal protein S12 methylthiotransferase [Escherichia coli B str. REL606] gi|253972813|gb|ACT38484.1| predicted SAM-dependent methyltransferase [Escherichia coli B str. REL606] Length = 441 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 143/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELILRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ +E G+ Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441 >gi|308049930|ref|YP_003913496.1| 30S ribosomal protein S12P methylthiotransferase [Ferrimonas balearica DSM 9799] gi|307632120|gb|ADN76422.1| SSU ribosomal protein S12P methylthiotransferase [Ferrimonas balearica DSM 9799] Length = 477 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 144/457 (31%), Positives = 226/457 (49%), Gaps = 48/457 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ +GY+ VN+ + ADL+++NTC + A ++ +G Sbjct: 45 SLGCPKNLVDSERILTQLRIEGYDIVNTYEGADLVIVNTCGFIDSAVQESLDTIGE---- 100 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G +LV GC+ E +EI + P V + GP Y + E + A K Sbjct: 101 ---ALKENGKVLVT--GCLGAKE-DEIKQIHPKVLGITGPHAYEMVLEQV-HAHLPKPEH 153 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D S+ I D G A+L I EGC+ CTFC++P RG SR + ++ Sbjct: 154 DPMTSL--------IPDHGVKLTPRHYAYLKISEGCNHKCTFCIIPSMRGTLDSRPMGEI 205 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 +DEA++L GV E+ ++ Q+ A W G + K + L L+E Sbjct: 206 LDEAKRLQAAGVKELLVISQDTGAYGVDVKHKTAFWNGMPV---KTSMLALCEKLAEFGI 262 Query: 260 LVRLRYTTSHPRDMSDCL-IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 VRL Y +P +++D L + A G + +PYL +P Q S RILK M R A + Sbjct: 263 WVRLHYVYPYP-NIADVLPLMAEGKV---LPYLDIPFQHASPRILKLMKRPGNAERTLEQ 318 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I R V PD+ I S FIVGFPGET+ DF+ +D +++ + FKYSP G + + Sbjct: 319 IKAWREVCPDLVIRSTFIVGFPGETEADFQLLLDWLEEARLDRVGCFKYSPVEGATANEL 378 Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433 + VDE VK E R + +Q ++ ++++ VGQ + V++++ G++ G+ +P Sbjct: 379 PDAVDEAVKEERYQRFMAVQARISREKLADR---VGQEMLVIVDEIGEDGAIGRSYADAP 435 Query: 434 WLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468 + V+ + N GD++ V I L+G LV Sbjct: 436 EIDGRVIIGGEYDLNPGDMVWVSIEFADDHDLFGTLV 472 >gi|258591968|emb|CBE68273.1| tRNA 2-methylthioadenosine synthase-like protein [NC10 bacterium 'Dutch sediment'] Length = 447 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 136/446 (30%), Positives = 217/446 (48%), Gaps = 19/446 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R +K+ GC+ N +S +++ G+ V D ADL ++NTC + ++A + Sbjct: 2 RVAIKTLGCRQNQCESDAIQESLRRDGHTAVGPDDAADLFIINTCSVTQEADADSRQMIR 61 Query: 86 R-IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--R 142 R +R ++R VVV GC AQ EI P V +V G +L E++ R Sbjct: 62 RAVRRNPSAR--------VVVTGCYAQIAAGEIAA-IPGVALVAGNGEKAQLSEMISGLR 112 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + +D +F L G + A L +Q+GC CTFC+VP TRG Sbjct: 113 EQSSPLIAVSDIQQSTRFAPLPPPIGATRSR----ALLKVQDGCSYRCTFCIVPETRGPN 168 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S+S V+ + R L+D G E+ L G ++ + G+ L + + L+ + E R Sbjct: 169 RSQSTDAVLRDLRVLVDAGYPEVVLTGTHLGTY-GRDLS-TGSSIAGLVADMLETAAPAR 226 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ P ++ + LI G + L +LHLPVQSG + +LK M R HTA ++R++++R+ Sbjct: 227 LRLSSLDPHEVGEELIGCFGRFENLCRHLHLPVQSGDETVLKRMRRPHTADDFRRLVERL 286 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 P IAI +D IVGFPGE D +F T L+D++ A F YS R GT + M V Sbjct: 287 AETVPGIAIGTDVIVGFPGEGDAEFEQTYRLLDRLPIAYLHVFNYSQRRGTVAAVMPNHV 346 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQ-IIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 ++V+A R L+ + +F VGQ V++E G+L + +V + Sbjct: 347 PKDVRAARSAALRALSDAKWRAFRQTQVGQSFAAVVLEGRDAPTGRLDALTDNYITVQVE 406 Query: 442 SKNHNIGDIIKVRITDVKISTLYGEL 467 ++G ++ + I V G L Sbjct: 407 RTEESVGRMVALSIETVTERETIGRL 432 >gi|194433148|ref|ZP_03065430.1| MiaB-like tRNA modifying enzyme YliG [Shigella dysenteriae 1012] gi|194418645|gb|EDX34732.1| MiaB-like tRNA modifying enzyme YliG [Shigella dysenteriae 1012] gi|332091042|gb|EGI96132.1| RNA modification enzyme, MiaB family protein [Shigella dysenteriae 155-74] Length = 441 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 143/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ +E G+ Sbjct: 343 DTNALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441 >gi|261491925|ref|ZP_05988502.1| 2-methylthioadenine synthetase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312392|gb|EEY13518.1| 2-methylthioadenine synthetase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 445 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 134/460 (29%), Positives = 217/460 (47%), Gaps = 50/460 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ + GY + S ++ADL+++NTC + A ++ +G Sbjct: 11 SLGCPKNLVDSERILTELRADGYNIIPSYENADLVIVNTCGFIDSAVQESLESIGEALEA 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 V+V GC+ E + I P V + GP +Y + + + Sbjct: 71 NGK---------VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAVMNHVHK-------- 112 Query: 151 DTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 Y + +F + + G A+L I EGCD CTFC++P RG SRS+ Sbjct: 113 ---YVPKPEFNPYTSLVPKQGIKLTPKHYAYLKISEGCDHLCTFCIIPSMRGDLASRSIV 169 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYS 253 QV+DEA++L+D GV E+ ++ Q+ +A W G + T + L S Sbjct: 170 QVLDEAKRLVDAGVKELLIVSQDTSAYSLDRKKEEETKTVFWNGMPIKSNLITLCEQLGS 229 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 + VRL Y +P + A G + +PYL +P+Q S +ILK+M R + Sbjct: 230 MGV---WVRLHYVYPYPHVDDLIPLMAAGKI---LPYLDIPLQHASPKILKAMKRPGSIE 283 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + I + R + P++ + S FIVGFPGET++DF+ +D + + + FK+SP G Sbjct: 284 RTLERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGA 343 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431 ++M +QV E VK ER + +E + A +G+ ++V+I+ +E G+ + Sbjct: 344 VATDMPDQVPEEVKEERFHRFMQLQQEISAARLQAKIGKTVQVIIDDIDEEGIIGRSMAD 403 Query: 432 SPWLQSVVL--NSKNH--NIGDIIKVRITDVKISTLYGEL 467 +P + VV N N +G II V IT L+G L Sbjct: 404 APEIDGVVYVDNPSNQLVTVGQIISVTITHADEYDLWGIL 443 >gi|88857374|ref|ZP_01132017.1| hypothetical protein PTD2_02401 [Pseudoalteromonas tunicata D2] gi|88820571|gb|EAR30383.1| hypothetical protein PTD2_02401 [Pseudoalteromonas tunicata D2] Length = 467 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 140/454 (30%), Positives = 222/454 (48%), Gaps = 44/454 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GYE V+S D+D++++NTC + A ++ +G Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEVVSSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI P V + GP Y + E + F + Sbjct: 96 ----LKENGK--VIVTGCLGARE-DEIREVHPNVLGITGPHAYENVMEHVHE--FAPK-- 144 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 V + F L I D G A+L I EGC+ CTFC++P RG +SR + V Sbjct: 145 ----PVLNPFMSL-IPDQGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDV 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA +L GV E+ ++ Q+ +A W G + K +L +L+++ Sbjct: 200 LQEAERLKQAGVKELLVISQDTSAYGVDVKSKTGFWNGMPV---KTDMLNLCQALNKLGI 256 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G L +PYL +P Q S RILK M R A I Sbjct: 257 WVRLHYVYPYPHVDDIIPLMAEGKL---LPYLDIPFQHASPRILKMMKRPGQAERTLDRI 313 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D +++ + FKYSP G + + Sbjct: 314 KKWRQLCPELVIRSTFIVGFPGETEEDFQILLDWLEEAQLDRVGCFKYSPIEGAKANELA 373 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEK--GKLVGRSPWL 435 E V E + +R L++Q +S N +GQ++EVL+++ +E G+ +P + Sbjct: 374 EPVPEEIMQDRFERFM--LKQQAISKNRLALRIGQVMEVLVDEVDEEGAIGRTFADAPEI 431 Query: 436 QSVV-LNSKNH-NIGDIIKVRITDVKISTLYGEL 467 V+ LN + GD++KV + L+G + Sbjct: 432 DGVIYLNGETDLKPGDVVKVLVEHSDEYDLWGSV 465 >gi|257467710|ref|ZP_05631806.1| Fe-S oxidoreductase [Fusobacterium ulcerans ATCC 49185] gi|317062003|ref|ZP_07926488.1| Fe-S oxidoreductase [Fusobacterium ulcerans ATCC 49185] gi|313687679|gb|EFS24514.1| Fe-S oxidoreductase [Fusobacterium ulcerans ATCC 49185] Length = 432 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 131/455 (28%), Positives = 236/455 (51%), Gaps = 40/455 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + GC++N Y++ +++ + Y ++AD+ ++N+C + A K + L Sbjct: 5 KRVAFYTLGCKVNQYETESIKNQLLKKEYTETAFEEEADIYIVNSCTVTSVADRKTRNML 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + + EG +V+V GC AQ +E+L I + V+G + +E Sbjct: 65 RRAKKIN----PEG---IVIVTGCYAQTNSKELLEMEEI-DYVIGNSDKNAIVNFIE--- 113 Query: 145 FGKRVVDTDYSVEDKFERLSI-VDGGYNRKRGVT------AFLTIQEGCDKFCTFCVVPY 197 D + +K + +I +D Y T A++ IQ+GC+ FC++C +P+ Sbjct: 114 ------DIENRTMEKVKNHNIFLDNEYTEYEFATLREMSRAYVKIQDGCNNFCSYCKIPF 167 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG SR ++ E KL++ G E+ L+G N+ A+ G+ LD E F LL S+ EI Sbjct: 168 ARGKSRSRKKYNIIKEIEKLVEEGFKEVILIGINLGAY-GEDLD-EGENFESLLKSILEI 225 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 L R+R + +P +SD + + LMP+LH+ +QS D +LK M R++ + Sbjct: 226 NKLERVRIGSVYPDKISDEFMDMFKN-KKLMPHLHISLQSCDDDVLKRMRRKYGSSLIED 284 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + +++ D+ ++D IVGFPGET++ F+ + DL++KIG++ F+YS R T S+ Sbjct: 285 RLLKLKEKVEDMEYTADVIVGFPGETEEMFQKSYDLIEKIGFSGIHIFQYSDRENTLASS 344 Query: 378 MLEQVDENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 +++D +K A+RL L+ K+ E++ + +G+ + VL+E+ +E G L G S Sbjct: 345 FTDKIDAKIKKERADRLEALKMKMAEKE---REKYIGKHLNVLLEE--RENGYLYGYSEN 399 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 V + + II +VKI++L E+++ Sbjct: 400 YLRVKVKDNEIKLNSII-----NVKINSLEKEMLI 429 >gi|323191004|gb|EFZ76271.1| RNA modification enzyme, MiaB family protein [Escherichia coli RN587/1] Length = 441 Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 143/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K L Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTCMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWRKICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ +E G+ Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441 >gi|319789539|ref|YP_004151172.1| MiaB-like tRNA modifying enzyme [Thermovibrio ammonificans HB-1] gi|317114041|gb|ADU96531.1| MiaB-like tRNA modifying enzyme [Thermovibrio ammonificans HB-1] Length = 441 Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 126/447 (28%), Positives = 228/447 (51%), Gaps = 22/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + GC+MN +++ +E+ F GY V ++AD+ V+NTC + A K + Sbjct: 2 KRVAFYTLGCKMNFHETAYLEEQFKGAGYRVVPFEEEADVYVINTCTVTHTADAKSRKAI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI--LRRSPIVNVVVGPQTYYRLPELLER 142 R + +N + LVVV GC ++ E++ ++ + ++ V Q L E R Sbjct: 62 RRAKQ-RNPKA------LVVVTGCYSEVYPEDVEKVKEADLITGNVEKQNLVELVEARLR 114 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VV + + F+RL+I + R R AF+ +Q+GC FCT+C++P RG Sbjct: 115 GELPRTVVKGVWR-DGTFQRLTI-ESFEGRTR---AFVKVQQGCQLFCTYCIIPKARGPM 169 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +S + + + ++L++ G EI L G ++ A+ G + E + + L+ +I GL R Sbjct: 170 VSLPPQEALSQIKRLVEAGYKEIVLTGTHLGAY---GREFEGWSLARLVEEAVKIPGLYR 226 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ P + + LI+ + + P+ H+P+QSGS +L+ M RR+T +Y ++I+ + Sbjct: 227 LRLSSVEPVEFTPHLIEVITGSEKVAPHYHVPLQSGSKSVLERMGRRYTPSDYERVIEEL 286 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RP+ + +D +VGFPGE++++F T++ + + F YS R GT + + V Sbjct: 287 VKRRPECCVGTDVMVGFPGESEEEFNETLEFIKSLPLGYLHVFPYSRRRGTVAARLRNSV 346 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 K R L++ E+ V F +G+ +E L+ K G + ++Q+ +LN Sbjct: 347 TPQEKRRRGELLREVGTEKSVEFRKRFLGKELEGLVIKQSP-YGSVALTGNYIQT-ILNG 404 Query: 443 KNHNIGDIIKVRITDV--KISTLYGEL 467 + G +K +T V K YGE+ Sbjct: 405 EVPT-GSTVKFTLTKVGRKREENYGEV 430 >gi|317491378|ref|ZP_07949814.1| MiaB tRNA modifying enzyme YliG [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920925|gb|EFV42248.1| MiaB tRNA modifying enzyme YliG [Enterobacteriaceae bacterium 9_2_54FAA] Length = 438 Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 138/462 (29%), Positives = 226/462 (48%), Gaps = 47/462 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDA+L+++NTC + A ++ Sbjct: 4 PRIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDAELVIVNTCGFIDSAVQESLEA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E + I P V + GP +Y + + + + Sbjct: 63 IGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAVLKHVHQY 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + F L + + G A+L I EGC+ CTFC++P RG Sbjct: 113 --------VPKPTHNPFTSL-VPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLD 163 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V+DEA++L+D GV E+ ++ Q+ +A W G+ + K + L Sbjct: 164 SRPIGSVLDEAKRLVDAGVKELLVISQDTSAYGVDVKHRTGFWNGQPV---KTSMISLCE 220 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 LS + VRL Y +P + A G + +PYL +P+Q S +ILK M R Sbjct: 221 QLSSLGVWVRLHYVYPYPHVDDVIPLMAEGKV---LPYLDIPLQHASPKILKLMKRPGAV 277 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I R R P + + S FIVGFPGET++DF+ +D + + + FK+SP G Sbjct: 278 ERTLERIKRWRETCPQLTLRSTFIVGFPGETEEDFQMLLDFLSEAKLDRVGCFKFSPVEG 337 Query: 373 TPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427 + + +QV E VK E R + LQ+++ Q++ VG + V+I++ +E G+ Sbjct: 338 AAANELADQVPEEVKEERFHRFMQLQQQISAQRLQDK---VGHTLPVIIDEVDEEGAIGR 394 Query: 428 LVGRSPWLQSVV-LNSKNH-NIGDIIKVRITDVKISTLYGEL 467 + +P + VV LN + +GD++ V I +V ++G + Sbjct: 395 SMADAPEIDGVVYLNGETKLKVGDVVNVTIENVDEYDMWGSV 436 >gi|227825054|ref|ZP_03989886.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226905553|gb|EEH91471.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 442 Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 127/438 (28%), Positives = 212/438 (48%), Gaps = 26/438 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S GC N+ DS M + + +E N AD+I++NTC E A + + + ++ Sbjct: 5 VVSLGCPKNLVDSEVMMGLIRDRKWELTNDPSHADIIIVNTCGFIESAKTESINTILQMA 64 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 K K +++ GC+ Q E+ + P V+ ++G + Y + +++R G+R Sbjct: 65 EYK----KIDSHRKLIMTGCLGQRYAHELFEQMPEVDAIIGTECYDAIGSVIDRVEKGER 120 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V + + + ++ TA++ I EGC C++C +P RG SR Sbjct: 121 FVLLEAPKQYSQPKSRVLSTP-----QYTAYVKIAEGCSNRCSYCAIPKIRGPYRSRPYE 175 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++V+E + L+ G E+ L+ Q+ + G+D K S+LL L+EI L +R Sbjct: 176 EIVEEVKSLVQQGTREVILVAQDTTQY---GIDLYHKLRLSELLRDLNEIPALTWIRILY 232 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P SD LI+ + Y+ LP+Q S+ +LK+M RR T + ++ ++R+ P Sbjct: 233 CYPESFSDELIETMAQCKKVCHYVDLPLQHASNSLLKTMRRRDTREQVEMLLAKLRNRMP 292 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 DI + + FIVGFPGET+ F +D K + A F YS T M Q+DE K Sbjct: 293 DICLRTTFIVGFPGETEAQFEELLDFAQKEHFQCAGVFTYSQEEETEAGAMKNQIDEATK 352 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRS----PWLQSVV 439 E RL+ LQ K+ E+ G+++ VL+E H ++ L V RS P + + Sbjct: 353 QERYHRLMALQAKISEE---IQQEREGKVLTVLVEGHDEKNPDLAVARSYAEAPDIDGKI 409 Query: 440 L--NSKNHNIGDIIKVRI 455 +K +GD + V+I Sbjct: 410 FIEGAKGLRVGDFVNVQI 427 >gi|293602346|ref|ZP_06684792.1| MiaB family RNA modification enzyme [Achromobacter piechaudii ATCC 43553] gi|292819108|gb|EFF78143.1| MiaB family RNA modification enzyme [Achromobacter piechaudii ATCC 43553] Length = 439 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 145/467 (31%), Positives = 236/467 (50%), Gaps = 54/467 (11%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GYE +DAD++V+NTC + A + Sbjct: 4 PKVGFV-SLGCPKALVDSERILTQLRTEGYEVTPEYNDADVVVVNTCGFIDSAKAESLEA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLER 142 +G + E G V+V GC+ E ++R+ P V V GPQ Y E + R Sbjct: 63 IGEA-------LAENGK--VIVTGCMGVEES--VIRKVHPSVLAVTGPQQY----EEVVR 107 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A V D +D L +V G A+L I EGC+ C+FC++P RG Sbjct: 108 A-----VHDAAPPKQDHNPYLDLVPPQGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGD 162 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +SR + V+ EA +L+ GV E+ ++ Q+ +A W G+ + K ++L Sbjct: 163 LVSRPVGDVLSEAERLVKAGVKEMLVISQDTSAYGVDVKYRSGFWNGRPV---KTRMTEL 219 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +LSE+ RL Y +P + A G + +PYL +P Q S RILK+M R Sbjct: 220 CLALSEMGIWTRLHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPRILKAMKR-- 274 Query: 311 TAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 A+E + + I R R + PD+ I S FIVGFPGET++DF+ +D + + + F+YS Sbjct: 275 PAFEDKTLARIKRWREICPDLTIRSTFIVGFPGETEEDFQYLLDWMQEAQLDRVGCFQYS 334 Query: 369 PRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 P G P + + V ++VK ER + LQ+ + +++ VG+ I+VLI++ ++ Sbjct: 335 PVEGAPANLLDNPVPDDVKQERWERFMQLQQGISTARLARK---VGREIDVLIDEVDEDG 391 Query: 426 --GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 G+ +P + V S ++ + GD+++VR+T+ L+GE++ Sbjct: 392 AIGRSSADAPEIDGCVYVSSDNPLKPGDMVRVRVTESDEYDLWGEVI 438 >gi|332882828|ref|ZP_08450439.1| tRNA methylthiotransferase YqeV [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679330|gb|EGJ52316.1| tRNA methylthiotransferase YqeV [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 435 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 127/426 (29%), Positives = 211/426 (49%), Gaps = 37/426 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F GY RV+ D AD+ V+NTC + E A + + + + Sbjct: 8 TLGCKLNFAETSTIARSFEEDGYIRVDFDDPADIYVINTCSVTENADK-------QFKQI 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-------ERA 143 +K + GC AQ + EE L V++V+G + + + + + E Sbjct: 61 VRKALKTNPKAFLAAVGCYAQLKPEE-LASVDGVDLVLGAKEKFNITQYIDDLTKNNEGV 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + +TD+ V G Y+ AFL +Q+GCD CT+C +P RGI Sbjct: 120 VHSCEIAETDFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPMARGISR 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260 S ++ ++ A+K+ D G+ EI L G N+ + GKG G K TF +L+ +L +++G+ Sbjct: 169 SDTIENILSNAKKISDKGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVEALDKVEGI 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ P + D I + +P+ H+P+QSGS+ ILK M RR+ Y + Sbjct: 228 ERLRISSIEPNLIKDETIDFIAQSNSFVPHFHIPLQSGSNEILKKMKRRYLRELYVSRVA 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +IR V PD I D IVGFPGETD+ F T ++ + + F YS R T M Sbjct: 288 KIREVMPDACIGVDVIVGFPGETDELFLETYYFLNDLDISYLHVFTYSERDNTEAVLMDG 347 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRSP 433 V + V+A+R L+ +++ +F ++ +G+ VL E HG + + ++P Sbjct: 348 VVPDEVRAKRSKMLRGLSAKKRNAFYESQLGKEKTVLFESDNKQGYIHGFTENYVKVKAP 407 Query: 434 WLQSVV 439 W ++V Sbjct: 408 WDPALV 413 >gi|227325860|ref|ZP_03829884.1| hypothetical protein PcarcW_00499 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 435 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 136/456 (29%), Positives = 224/456 (49%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY+ V DDA+L+++NTC + A ++ +G N Sbjct: 8 SLGCPKNLVDSERILTELRTEGYQVVPRYDDAELVIVNTCGFIDSAVQESLEAIGEALN- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 E G V+V GC+ E + I P V + GP +Y ++ + + Sbjct: 67 ------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQVLSHVHQY------- 110 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F L + + G A+L I EGC+ CTFC++P RG SR + V Sbjct: 111 -VPKPTHNPFTSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLDSRPIGSV 168 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 +DEA++L+D GV E+ ++ Q+ +A W G+ + K + L L+ + Sbjct: 169 LDEAKRLVDAGVKELLVISQDTSAYGADVKQRTGFWNGQPV---KTSMVSLCEQLASLGV 225 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P+Q S +ILK M R + I Sbjct: 226 WVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPKILKLMKRPGAVERTLERI 282 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R R + PD+ + S FIVGFPGET++DF+ +D + + + FK+SP G + + Sbjct: 283 KRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAKLDRVGCFKFSPVEGAAANELP 342 Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 +QV E VK E R + LQ+ + Q++ +G+ + VLI++ +E G+ + +P Sbjct: 343 DQVPEEVKEERFHRFMQLQQAISTQRLQDK---IGREVLVLIDEIDEEGAIGRSMADAPE 399 Query: 435 LQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + +V LN + +GDI+KV++ L+G V Sbjct: 400 IDGAVYLNGETGVKVGDIVKVKVEHADEYDLWGSRV 435 >gi|206579256|ref|YP_002239518.1| MiaB-like tRNA modifying enzyme YliG [Klebsiella pneumoniae 342] gi|288936365|ref|YP_003440424.1| RNA modification enzyme, MiaB family [Klebsiella variicola At-22] gi|290510579|ref|ZP_06549949.1| MiaB-like tRNA modifying enzyme YliG [Klebsiella sp. 1_1_55] gi|238066342|sp|B5XYQ3|RIMO_KLEP3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|206568314|gb|ACI10090.1| MiaB-like tRNA modifying enzyme YliG [Klebsiella pneumoniae 342] gi|288891074|gb|ADC59392.1| RNA modification enzyme, MiaB family [Klebsiella variicola At-22] gi|289777295|gb|EFD85293.1| MiaB-like tRNA modifying enzyme YliG [Klebsiella sp. 1_1_55] Length = 441 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 141/462 (30%), Positives = 237/462 (51%), Gaps = 51/462 (11%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V + D+AD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPTYDNADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G +KE G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEA-------LKENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 YS + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YSPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDL 250 +SR + +V+ EA++L D GV E+ ++ Q+ +A+ G+D + K + L Sbjct: 166 LVSRPIGEVLAEAKRLADAGVKELLVISQDTSAY---GVDVKHRTGFHNGMPVKTSMVSL 222 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L+++ VRL Y +P + A G + +PYL +P+Q S RILK M R Sbjct: 223 CEELAKLGIWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPG 279 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 +A I + R + PD+ + S FIVGFPGET++DF+ +D + + + FKYSP Sbjct: 280 SADRQLARIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPV 339 Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425 G + + +QV E VK E R + LQ+++ +++ VG+ I VL+++ +E Sbjct: 340 EGATANELADQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVLVDEVDEEGAI 396 Query: 426 GKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465 G+ + +P + +V LN + GD+++V++ L+G Sbjct: 397 GRSMADAPEIDGAVYLNGETRVKPGDVVRVKVEHADEYDLWG 438 >gi|291559329|emb|CBL38129.1| MiaB-like tRNA modifying enzyme [butyrate-producing bacterium SSC/2] Length = 440 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 128/446 (28%), Positives = 228/446 (51%), Gaps = 33/446 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + + GC++N Y++ M M G V+ + AD+ ++NTC + A K L Sbjct: 6 KRAAIVTLGCKVNQYETDAMYGMLKEAGVTMVDPKEAADIYIVNTCSVTNMAERKSRQML 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + K+ D++VV GC AQ G+E L + +++++G L +LE Sbjct: 66 HRAK-------KKNPDVVVVAVGCYAQV-GKEELSKDTNIDLIIGNNKKKDLIHILEE-H 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNR----------KRGVTAFLTIQEGCDKFCTFCV 194 G++ E E + ++D +++ K A++ +Q+GC++FC++C+ Sbjct: 117 MGEK--------ESAAESIEVIDIAHDQEYESLHVEQLKEHTRAYIKVQDGCNQFCSYCI 168 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 +PY RG SR + +V++E L +G E + G +V ++ G D T DLL + Sbjct: 169 IPYARGRVRSRKMEEVLEEITNLTKHGCQEFVITGIHVTSY---GKDLGDVTLIDLLEEI 225 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 ++I + R+R + P ++ + ++ P+ HL +QSG D +LK MNR++T + Sbjct: 226 AKIPEVKRIRLGSLEPGFITKDTLDRLSKMESFCPHFHLSLQSGCDSVLKRMNRKYTTQD 285 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 R+ IR A+++D IVGFPGET+++F T +++I + FKYS R GT Sbjct: 286 IREKCKAIREHFQYPALTTDIIVGFPGETEEEFEETRKFLEEIDLYEMHVFKYSIRKGTK 345 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRS 432 ++M Q+++ +KA+R L + ++ Q F +G + EVLIE+ HGK+ G + Sbjct: 346 AADMKPQINDQIKAKRSNVLLEMSKQHQKEFETKQLGMVKEVLIEEKMHGKDH-YYTGHT 404 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDV 458 V L S+ I+KV++ + Sbjct: 405 KEYIKVALYSEEPLENKIVKVKLRQI 430 >gi|183600133|ref|ZP_02961626.1| hypothetical protein PROSTU_03669 [Providencia stuartii ATCC 25827] gi|188022422|gb|EDU60462.1| hypothetical protein PROSTU_03669 [Providencia stuartii ATCC 25827] Length = 444 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 141/468 (30%), Positives = 233/468 (49%), Gaps = 55/468 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP+ FV S GC N+ DS R+ + GY+ V S DDADL+++NTC + A ++ Sbjct: 8 VPKIGFV-SLGCPKNLVDSERILTELRTDGYQVVPSYDDADLVIVNTCGFIDSAVQESLE 66 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N E G V+V GC+ E + I P V + GP +Y Sbjct: 67 AIGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSY--------- 107 Query: 143 ARFGKRVVDTDYSVEDKFER---LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++V++ + K E LS+V + G A+L I EGC+ CTFC++P Sbjct: 108 ----EQVLNHVHHYVPKPEHDPFLSLVPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPSM 163 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG SR++ V++EA++L+++GV E+ ++ Q+ +A W GK + K + Sbjct: 164 RGDLDSRAIGDVLNEAKRLVESGVKELLVISQDTSAYGVDVKHRTGFWEGKPV---KTSM 220 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 L L+ + VRL Y +P + A G + +PYL +P+Q S +ILK M Sbjct: 221 VGLCEQLASLGVWVRLHYVYPYPHVDEVIPLMAEGKV---LPYLDIPLQHASPKILKLMK 277 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + I R R + P++ + S FIVGFPGET++DF+ +D + + + FKY Sbjct: 278 RPGAVERTLERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLQEARLDRVGCFKY 337 Query: 368 SPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 SP G + + +QV E VK E R + LQ+++ +++ +G+ + V+I++ E Sbjct: 338 SPVEGAKANELADQVPEEVKEERYHRFMQLQQQISTERLQEK---IGRKLPVIIDEVDDE 394 Query: 425 K--GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 G+ + +P + +V + ++ GDI+ V I L+G +V Sbjct: 395 GAIGRSMADAPEIDGMVYLNGEFDVKPGDIVNVLIEHADEYDLWGSIV 442 >gi|118591328|ref|ZP_01548726.1| hypothetical protein SIAM614_26813 [Stappia aggregata IAM 12614] gi|118436000|gb|EAV42643.1| hypothetical protein SIAM614_26813 [Stappia aggregata IAM 12614] Length = 422 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 141/444 (31%), Positives = 217/444 (48%), Gaps = 38/444 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI- 87 V ++GC++N Y+S M+ + G + D I++NTC + +A + + + Sbjct: 5 VVTFGCRLNAYESEVMKREAEAAGLK--------DAILVNTCAVTGEAVRQARQAVRKAK 56 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG- 146 R+ N+R V+V GC AQ E E V++V+G + A FG Sbjct: 57 RDNPNAR--------VIVTGCAAQTESETFSSMEE-VDLVLGNTEKLERKSYQDVAAFGV 107 Query: 147 ----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K V+ SVE+ L +DG R R AF+ +Q GCD CTFC++PY RG Sbjct: 108 SETEKVRVNDIMSVEETAGHL--IDGLTGRAR---AFVQVQNGCDHRCTFCIIPYGRGNS 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + V+D+ ++L+ NG EI L G ++ ++ G L G + L + L R Sbjct: 163 RSVPMGVVIDQIKRLVGNGYNEIVLTGVDITSY-GADLPGTPKLGTLSAKILKMVPELKR 221 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ + D L++ + + LMP+LHL +Q+G D ILK M RRH + + + + Sbjct: 222 LRLSSIDSIEADDDLMRVIAEDERLMPHLHLSLQAGDDMILKRMKRRHLRADTIRFCEEV 281 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RPD+ +D I GFP ET++ F+ ++ +VD+ F +SPR GTP + M Q+ Sbjct: 282 RRLRPDMVFGADIIAGFPTETEEMFQNSLRIVDECDLTHLHVFPFSPRKGTPAARM-PQL 340 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 +V ER L+ K E V A VG+ VLIEK G +GR+ V L Sbjct: 341 PRDVVKERGARLRAKGEEALVRHLQAEVGKTRPVLIEKEG------LGRTEQFTQVELGG 394 Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466 G+I++ RI L GE Sbjct: 395 G--TAGEIVETRIVGHTGRHLLGE 416 >gi|86132712|ref|ZP_01051304.1| MiaB-like tRNA modifying enzyme [Dokdonia donghaensis MED134] gi|85816666|gb|EAQ37852.1| MiaB-like tRNA modifying enzyme [Dokdonia donghaensis MED134] Length = 447 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 135/432 (31%), Positives = 215/432 (49%), Gaps = 44/432 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F +G+++V+ + AD+ V+NTC + E A + R +N+ Sbjct: 11 TLGCKLNFSETSTIARSFGKEGFDKVDFSEAADVYVINTCSVTENADK-------RFKNI 63 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-------ERA 143 K D + V GC AQ + EE L V++V+G + + + +RA Sbjct: 64 VKQAQKANPDAVKVAVGCYAQLKPEE-LAAVDGVDLVLGATEKFNVTSYINDLLNNPDRA 122 Query: 144 RFGKRV-----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 R G V D D+ V SI D R R AFL +Q+GCD CT+C +P Sbjct: 123 RDGGEVHACEIQDADFYVSS----YSIGD----RTR---AFLKVQDGCDYKCTYCTIPLA 171 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLS 255 RGI S +L V+D A K+ + EI L G N+ + GKG G K TF +L+ L Sbjct: 172 RGISRSDTLQNVLDNAAKIAAQDIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVQELD 230 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + G+ RLR ++ P + + I+ + +P+ H+P+QSGS++IL M RR+ Y Sbjct: 231 RVDGIERLRISSIEPNLLKNETIEVVSNSRTFVPHFHIPLQSGSNKILGLMRRRYQRELY 290 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + +I+ V P I D IVGFPGETD+DF T + ++ + + F YS R TP Sbjct: 291 VDRVAKIKEVMPHACIGVDVIVGFPGETDEDFLETYNFLNSLDISYLHVFTYSERDNTPA 350 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----- 430 + M V +NV+++R L+ + + +F ++ + VL E KE G + G Sbjct: 351 ATMDGVVPKNVRSKRSKMLRGLSAKMRRAFYESQLDTKRTVLFESENKE-GYIHGFTENY 409 Query: 431 ---RSPWLQSVV 439 ++PW +V Sbjct: 410 VKVKAPWNPELV 421 >gi|269837323|ref|YP_003319551.1| MiaB-like tRNA modifying enzyme [Sphaerobacter thermophilus DSM 20745] gi|269786586|gb|ACZ38729.1| MiaB-like tRNA modifying enzyme [Sphaerobacter thermophilus DSM 20745] Length = 449 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 124/411 (30%), Positives = 208/411 (50%), Gaps = 28/411 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF + + GC++N D + G + V+ +A++ ++NTC + + A + L Sbjct: 19 RFAICTLGCKLNQSDEADLRRSLRQAGLQEVDFGSEAEVYIVNTCTVTQLADRRSRQMLR 78 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP-QTYYRLPELLERAR 144 R ++ + LV GC +E L P V++VVG + + E+L R Sbjct: 79 RAH-------RQNPEALVAAIGCYPAVNPDE-LHAMPEVDIVVGSIEKATVVDEILGRLD 130 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + D+D VE R + IQEGC CT+C++P RG + Sbjct: 131 WENQAFDSDEPVEHVETR-------------TRRMIKIQEGCRAHCTYCIIPRARGAPRN 177 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKGLVRL 263 + ++VV ++ ID G E+ L G +V + K +G++ +DLL + E + RL Sbjct: 178 VAPAEVVRRVQEAIDEGYREVVLTGTHVGTY--KWPEGDRTLRLADLLELVLEATTIERL 235 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R T+ P ++ + I A + + P+LH+ +QSGS+ +L+ M R + ++R+ + R+R Sbjct: 236 RVTSVGPHEIDERFI-ALVNHPRMAPHLHMALQSGSETVLRRMKRWYNTRQFRRAVRRLR 294 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PDIAI++D IVGFPGETD++F T D V ++G+A+ F +SPR TP + M +QV Sbjct: 295 EEVPDIAITTDVIVGFPGETDEEFAETCDFVREMGFAKLHVFPFSPRKDTPAAAMPDQVH 354 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 VK R L+ E +F +G+ + VL+E+ ++ GRS W Sbjct: 355 PRVKERRAAELRAIGDELHAAFVARHLGREVRVLVEQVAEQLPD--GRSLW 403 >gi|83594143|ref|YP_427895.1| ribosomal protein S12 methylthiotransferase [Rhodospirillum rubrum ATCC 11170] gi|123725878|sp|Q2RQI7|RIMO_RHORT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|83577057|gb|ABC23608.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 441 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 143/464 (30%), Positives = 225/464 (48%), Gaps = 51/464 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ + S GC + DS R+ ++GYE + DDA+++++NTC + A + + Sbjct: 6 QKVGIVSLGCPKALVDSERILTRLRAEGYEVSPTYDDANVVIVNTCGFLDSAKAESLEAI 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS--PIVNVVVGPQTYYRLPELLER 142 G +N R V+V GC+ G+E RS P V V GPQ Y R+ + Sbjct: 66 GEAMA-QNGR--------VIVTGCMG---GDEAAIRSAHPGVLAVTGPQQYERVVAAVHE 113 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D + L +G R A+L I EGC+ CTFC++P RG Sbjct: 114 AA---------PPAHDPYLDLVPAEGIRLTPRHY-AYLKISEGCNHGCTFCIIPDLRGKL 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR S+V+ EA KL + GV E+ ++ Q+ +A W G + K ++L Sbjct: 164 VSRPASKVLMEAEKLAEAGVRELLVISQDTSAYGVDLRHGESPWHGAPV---KARMTELC 220 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L E+ VRL Y +P + A G + +PYL +P Q S +IL++M R Sbjct: 221 SALGELGIWVRLHYVYPYPFVDEIIPLMAEGKI---LPYLDIPFQHASPKILEAMKRPAA 277 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I R R++ PDIA+ S FIVGFPGET+DDF+ +D + + + FKY Sbjct: 278 QDRTLERIRRWRTICPDIALRSTFIVGFPGETEDDFQQLLDWMGEAELDRVGCFKYEAVA 337 Query: 372 GTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426 G + + + V E VK E R + Q+++ E++++ VG +IE +I++ +E G Sbjct: 338 GAKANALADAVPEEVKEERWHRFMAAQQEISERRLAQK---VGTVIEAIIDEVDEEGAIG 394 Query: 427 KLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + G +P + S+ LN + GDI+ V I L+G L Sbjct: 395 RTKGDAPEIDGSLFLNGETSLAPGDIVPVLIEHADEYDLWGSLA 438 >gi|261856499|ref|YP_003263782.1| MiaB-like tRNA modifying enzyme YliG [Halothiobacillus neapolitanus c2] gi|261836968|gb|ACX96735.1| MiaB-like tRNA modifying enzyme YliG [Halothiobacillus neapolitanus c2] Length = 454 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 142/476 (29%), Positives = 226/476 (47%), Gaps = 65/476 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GY + DA+L+++NTC + A ++ Sbjct: 6 PRVGFV-SLGCPKALVDSERILTQLRAEGYALSSDYQDAELVIVNTCGFIDSATQESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCV-AQAEGEEILRRSPIVNVVVGPQTY--------- 133 +G + E G V+V GC+ A+ EGE I + P V + GPQ Y Sbjct: 65 IGEA-------LTENGK--VIVTGCLGARDEGELIRQTHPSVLAITGPQAYGEVMGAVHQ 115 Query: 134 YRLP------ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187 Y P +L+ R V D + V G A+L I EGC+ Sbjct: 116 YLPPRHDPFVDLMPAPRVQTEVSDFESKV------------GIKLTPRHYAYLKISEGCN 163 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---- 243 C+FC++P RG +SR + +V+ EA+ L++ GV E+ ++ Q+ +A+ GLD Sbjct: 164 HRCSFCIIPSMRGDLVSRPVGEVLTEAQNLVNAGVRELLVVSQDTSAY---GLDTRYKLD 220 Query: 244 -------KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 K F +L L ++ +RL Y +P + A G +++PYL +P Q Sbjct: 221 FFGGKPVKTRFKELAAELGQMDAWIRLHYVYPYPHVDEVIPLMAEG---LVLPYLDIPFQ 277 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDL 353 S RILK+M R ++ ++ RIR+ R PD+ + S FIVGFPGET+DDF+ +D Sbjct: 278 HASPRILKAMKRPASS---ENVLARIRTWRDVCPDLTLRSTFIVGFPGETEDDFQQLLDF 334 Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413 +D+ + +F YSP G + + + V E++K ERL K E + VGQ Sbjct: 335 LDEAQLDRVGAFTYSPVEGATANQLAKPVPESLKQERLERFMAKQAEISAAKLAVKVGQR 394 Query: 414 IEVLIEK--HGKEKGKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465 + +LI++ G+ G +P + VV ++ GD ++V IT L+ Sbjct: 395 MAILIDEVDESGAVGRGPGDAPEIDGVVFLPDVTDVRPGDFVEVEITAADEHDLWA 450 >gi|324112729|gb|EGC06705.1| MiaB tRNA modifying enzyme YliG [Escherichia fergusonii B253] Length = 441 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 232/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFYNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FK+SP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKFSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ E G+ Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGKEILVIIDEVDDEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGESNVKPGDIVRVKVEHADEYDLWGSRV 441 >gi|302872168|ref|YP_003840804.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor obsidiansis OB47] gi|302575027|gb|ADL42818.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor obsidiansis OB47] Length = 441 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 133/454 (29%), Positives = 231/454 (50%), Gaps = 35/454 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M G+E ++ +DAD+IV+NTC A ++ + + Sbjct: 8 SLGCNKNLVDSEIMMGACVEAGFEITSNAEDADVIVVNTCGFINDAKQESIDTILDMAEY 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 KN + K ++V GC+ Q +EIL + P ++ ++G + +LP++++ GK+ + Sbjct: 68 KNKKCK-----FLIVTGCLTQRYKDEILEQMPEIDAILGVKEMLKLPDVIKDLYEGKQRI 122 Query: 151 D-----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + R+ Y A++ I EGC+ C++C +P RG SR Sbjct: 123 KVFNDASSFVYSSSMPRVIATPSYY-------AYIKIAEGCNNRCSYCSIPLIRGKYTSR 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +V EA++L + G EI L Q+ + G + G+K LL L +I+ + +R+ Sbjct: 176 PIEDIVREAKELAERGYKEIILTAQDTTKY-GTDIYGKK-MLPALLEELEKIEKIKWIRF 233 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 S+P D+ + + ++ Y +PVQ +DRILK MNR+ T R++I++IR Sbjct: 234 LYSYPEDLDENFVNVVKFSSKVVNYFDIPVQHVNDRILKLMNRKSTKESIRRLIEKIRES 293 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 ++ I + +VGFP ETD++F + + + +F YS GT S L QVDE+ Sbjct: 294 FDEVVIRTTILVGFPTETDEEFEELCSFLKWAEFDRLGAFMYSQEEGTLASQ-LPQVDED 352 Query: 386 VKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQ----- 436 +K E++L +Q+K+ ++Q N +G+ EV+IE K++ +GRS + Sbjct: 353 IKQRRYEKVLNIQRKISKKQ---NRKRIGKEYEVVIE--AKDRNNFYIGRSQFEAPEVDG 407 Query: 437 SVVLNSKNH-NIGDIIKVRITDVKISTLYGELVV 469 V++ SKN G +KV+I D L GE+++ Sbjct: 408 KVLVFSKNRLTAGQFVKVKILDAFEYDLVGEIIL 441 >gi|329121012|ref|ZP_08249643.1| MiaB family RNA modification enzyme [Dialister micraerophilus DSM 19965] gi|327471174|gb|EGF16628.1| MiaB family RNA modification enzyme [Dialister micraerophilus DSM 19965] Length = 448 Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 127/443 (28%), Positives = 227/443 (51%), Gaps = 32/443 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M + + GYE N + +A +I++NTC + A ++ + I N Sbjct: 10 SLGCSKNLVDTEMMVGILQNAGYELTNDLSEAHVIIVNTCTFIDPAKQESIETVLEIANY 69 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--RFGKR 148 K K G +V AGC+ Q E + + P +++ +G ++ + + ++++ + ++ Sbjct: 70 K----KTGKCERLVAAGCLTQQYKEALAKEIPEIDIFIGTDSWRNILKAVQKSYEKENEK 125 Query: 149 VVD---TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + T + E+ R + Y +++ I EGC+K CTFC +P+ RG SR Sbjct: 126 IYEFNCTPCASEELIPR-KLTTPSY------MSYIKISEGCNKGCTFCYIPFVRGPMRSR 178 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++S ++ E R L GV E L+ Q+++ + DG LL L +I + +R Sbjct: 179 TISSILSEVRNLAKQGVREFNLIAQDLSCYGQDLRDGTSLIL--LLKQLVKIPEVKWIRL 236 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + +D L+ + Y+ +P+Q SD +LK MNR+ T+ +++++IR+ Sbjct: 237 FYLYPTNFTDELLDLISKERKICKYIDIPLQHISDNVLKRMNRKDTSESILKLLNKIRNN 296 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P I I + +VGFPGET+ DF + + KI + +FK+SP+ GT + M Q+ E+ Sbjct: 297 IPYITIRTTLMVGFPGETESDFEDLCEFIKKIKFDNMGAFKFSPQEGTAAALMQNQISED 356 Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR------SPWL- 435 VK +R L+ +Q + E+ N+ +G+ EVLIE K+ KL+ + SP + Sbjct: 357 VKEKRYDKLMSIQAGISEEN---NELLIGKEAEVLIEDIIKDGEKLIAKGRTSFQSPDVD 413 Query: 436 -QSVVLNSKNHNIGDIIKVRITD 457 + + N + GD IK +I D Sbjct: 414 GNTYIYNFGDACPGDFIKTKIID 436 >gi|296121002|ref|YP_003628780.1| MiaB-like tRNA modifying enzyme YliG [Planctomyces limnophilus DSM 3776] gi|296013342|gb|ADG66581.1| MiaB-like tRNA modifying enzyme YliG [Planctomyces limnophilus DSM 3776] Length = 463 Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 127/436 (29%), Positives = 223/436 (51%), Gaps = 24/436 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS RM +GY V + + AD +V+NTC + A E+ S + + L Sbjct: 20 SLGCPKNLVDSERMLGTLSEEGYSLVPNPEGADFVVINTCGFIDSAREESKSVIREMLQL 79 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K+ GG V+VAGC+ + G +L+ P ++ V+G + + ++ +R G R Sbjct: 80 KS----HGGTRGVIVAGCLPERMGGALLQEIPEIDHVMGVFSREEIGKVADRMVGGAREQ 135 Query: 151 DTDY------SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + +++D+ RL + + A+L I EGCD+ CTFC +P RG I+ Sbjct: 136 REVFRPAPIRAMDDRL-RLRVTPKHF-------AYLKISEGCDRTCTFCAIPKMRGKHIT 187 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + + V+ EAR+L +GV E+ L+ Q+ + G L G + ++LL + +++G+ +R Sbjct: 188 KPIEMVIQEARELAADGVKELILVAQDTTYY-GLDLYG-RVRLAELLREVEKVEGIQWIR 245 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P +D LI ++PYL LP+Q +D +L+ M RR +++D+++ Sbjct: 246 LMYLYPIHFTDELIDTIAGSGKILPYLDLPLQHINDTMLRRMQRRTNRAATVELLDKLQD 305 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 ++ I + FI GFPGETD F VD+ +A+ +F YS GTP + + + E Sbjct: 306 RIANLTIRTTFITGFPGETDAQFEELCQFVDEGRFARLGAFTYSYEPGTPAVRLPDHLPE 365 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQS-VVL 440 +VKA R L + + +F D +G ++ ++++ E+ G+ +P + + V + Sbjct: 366 DVKAARRDRLMEIQQPHAFAFADQWIGYELDAVLDRKIDEQTWLGRCFFDAPDIDANVFV 425 Query: 441 NSKNHNIGDIIKVRIT 456 +N G +I V IT Sbjct: 426 TGENLRAGQMIPVEIT 441 >gi|149372096|ref|ZP_01891366.1| possible 2-methylthioadenine synthetase [unidentified eubacterium SCB49] gi|149354863|gb|EDM43425.1| possible 2-methylthioadenine synthetase [unidentified eubacterium SCB49] Length = 449 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 128/418 (30%), Positives = 205/418 (49%), Gaps = 35/418 (8%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 I ++ + GC++N ++ + F +GYERV+ ++AD+ V+NTC + E A ++ Sbjct: 2 IAQKKVAFYTLGCKLNFSETSTIARDFTKEGYERVDFKEEADIYVVNTCSVTENADKRFK 61 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---- 137 S + + + K D V GC AQ + EE L V++V+G ++LP Sbjct: 62 SIVKQAQ-------KVNPDAFVAAIGCYAQLKPEE-LADVDGVDLVLGATEKFKLPFYIS 113 Query: 138 ELLERARFGK--------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189 ELL K + D D+ V G Y+ AFL +Q+GCD Sbjct: 114 ELLASPDRSKGDAQIHSCEIEDADFYV-----------GSYSIGDRTRAFLKVQDGCDYK 162 Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CT 246 CT+C +P RGI S +L V+ A ++ + EI L G N+ + GKG G K T Sbjct: 163 CTYCTIPLARGISRSDALENVLKNASEIAAQNIKEIVLTGVNIGDY-GKGEFGNKKHEHT 221 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F +L +L E+ G+ RLR ++ P + + I +P+ H+P+QSGS+ +LK M Sbjct: 222 FFELCQALDEVAGIERLRISSIEPNLLKNETIDFVAQSKTFVPHFHIPLQSGSNTLLKLM 281 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 RR+ Y + +I+ V P+ I D IVGFPGETD+ F T + + + + F Sbjct: 282 KRRYMRELYVDRVSQIKQVMPNACIGVDVIVGFPGETDELFLETYNFLTTLDISYLHVFT 341 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 YS R T + M V + V+A+R L+ +++ +F ++ + + VL E KE Sbjct: 342 YSERENTEAATMEGVVPKKVRAKRSKMLRGLSAKKRRAFYESQLNNTLTVLFEGENKE 399 >gi|296103227|ref|YP_003613373.1| hypothetical protein ECL_02885 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057686|gb|ADF62424.1| hypothetical protein ECL_02885 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 441 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 139/462 (30%), Positives = 232/462 (50%), Gaps = 44/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P + S GC N+ DS R+ ++GY+ V S D+AD++++NTC + A ++ Sbjct: 7 PPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDNADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEA-------LTENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L D GV E+ ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGEVLAEAKRLADAGVKELLVISQDTSAYGVDVKHRSGFHNGEPVKTSMVGLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 L+++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LAKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + PD+ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ +E G+ Sbjct: 343 TANELADQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREIMVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDII+V++ + L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIIRVKVENADEYDLWGSRV 441 >gi|331001874|ref|ZP_08325395.1| MiaB-like tRNA modifying enzyme YliG [Lachnospiraceae oral taxon 107 str. F0167] gi|330412197|gb|EGG91591.1| MiaB-like tRNA modifying enzyme YliG [Lachnospiraceae oral taxon 107 str. F0167] Length = 440 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 132/452 (29%), Positives = 232/452 (51%), Gaps = 32/452 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS M + +G+E + ++A+++++NTC + A E+ + + L Sbjct: 7 SLGCDKNTVDSEMMLGLMNEKGFEYTDIDEEAEVMIINTCGFIQSAKEESINAI-----L 61 Query: 91 KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 +R+KE G L ++V GC+AQ +EI++ P V+ ++G ++ ++ E +E G+ Sbjct: 62 DAARLKEDGALKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEDVLGGE-- 119 Query: 150 VDTDYSVEDKF---ERL-SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++++F +RL SI + N G A+L I EGC+K CT+C++P RG S Sbjct: 120 ------IKNEFLDLDRLPSISNKRKNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSY 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + ++ +A+ L G+ E+ L+ Q + G L GEK T LL L+++ G+ +R Sbjct: 174 PMDDLITQAKDLAAQGIKELILVAQETTLY-GVDLYGEK-TLPKLLKELAKVSGIEWIRI 231 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P +++D LI + + + YL +P+Q SD IL+ M RR T + II ++R Sbjct: 232 LYCYPEEITDELIDVIANEEKVCKYLDIPIQHASDNILRRMARRTTHDDLVSIIGKLRKN 291 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P I + + I GFPGET+ D + + ++ + + F YS GT + Q+DE Sbjct: 292 IPGITLRTTIISGFPGETEKDLETVIKFIKEMKFERLGVFTYSEEEGTVAAGFENQIDEE 351 Query: 386 VKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438 K +R++ +Q+++ E + VG+ +VLIE E+ +GR+ P + Sbjct: 352 EKEARRDRIMRVQQEVSENNLL---NMVGRTFKVLIEGRLPEENVYIGRTYMDVPGVDGY 408 Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 V + + N GD V IT L G+++ Sbjct: 409 VFVNTDKNFISGDFCDVIITGSSEYDLIGDVL 440 >gi|260589077|ref|ZP_05854990.1| RNA modification enzyme, MiaB family [Blautia hansenii DSM 20583] gi|331082507|ref|ZP_08331632.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium 6_1_63FAA] gi|260540497|gb|EEX21066.1| RNA modification enzyme, MiaB family [Blautia hansenii DSM 20583] gi|330400485|gb|EGG80115.1| MiaB-like tRNA modifying enzyme [Lachnospiraceae bacterium 6_1_63FAA] Length = 434 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 124/417 (29%), Positives = 227/417 (54%), Gaps = 26/417 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ + + GC++N Y+ M++M GYE V AD+ ++NTC + A K Sbjct: 1 MKKKVALHNLGCKVNAYELEAMQEMLEKAGYEIVPFAPGADVYIINTCTVTNIADRKSRQ 60 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L + R + + +V+ AGC QA+ + + +++V+G L +LE Sbjct: 61 MLHKARKM-------NPEAIVIAAGCYVQAQ-KNMENIDDAIDIVLGNNRKQDLLFVLEN 112 Query: 143 ARFG----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + G K ++ D VE +E L + G + + A+L +Q+GC++FC++C++PY Sbjct: 113 YKKGSGQEKDLISLDKPVE--YEELQLSSTGEHTR----AYLKVQDGCNQFCSYCIIPYV 166 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG SR +V++E +L NG E L G +++++ G+D E +L+ ++ EI+ Sbjct: 167 RGRVRSRRKEEVLEEVLRLTKNGYQEFVLTGIHLSSY---GVDCED-NLLELIKAVHEIE 222 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R+R + PR +++ +A G++ + P+ HL +QSG D L MNR+++A EY + Sbjct: 223 GVKRIRLGSLEPRIITEEFAQALGNMPKICPHFHLSLQSGCDATLMRMNRKYSAEEYLEG 282 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +R + A+++D IVGFP E++++F + +++ + + + FKYS R GT + M Sbjct: 283 CRLLRKYFKNPALTTDVIVGFPQESEEEFEQSYKMIESVEFYETHIFKYSRRQGTRAAEM 342 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 QVDE VK ER L + +E++ + ++ +GQ +E+L E E K+ G W+ Sbjct: 343 EGQVDEAVKTERSHKLIQLGKEKKQKYMESFLGQQVEILFE----ETAKIQGEEYWI 395 >gi|28210972|ref|NP_781916.1| Fe-S oxidoreductase [Clostridium tetani E88] gi|75542496|sp|Q895I7|RIMO_CLOTE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|28203411|gb|AAO35853.1| Fe-S oxidoreductase [Clostridium tetani E88] Length = 444 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 127/389 (32%), Positives = 204/389 (52%), Gaps = 28/389 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++ V S GC N DS M + +G N +AD+I++NTC E + ++ + Sbjct: 5 KYGVVSLGCDKNRIDSEVMINEIKKEGI-ITNDPKEADVIIVNTCGFIEDSKKESIDTIL 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-R 144 + N KN+ K ++VV GC++Q GEE+ P V+V++G Y +L + ++++ Sbjct: 64 EMSNYKNNNCK-----VLVVTGCLSQRYGEELQELLPEVDVMLGVNDYDKLSDAIKKSIE 118 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTR 199 G++ + +YS I +GG R +T A+L I EGCD FCT+C +P R Sbjct: 119 KGEKSLYCNYS------NTVINEGG----RVLTTQKHYAYLRIAEGCDNFCTYCAIPKIR 168 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEI 257 G SR + +++EA+ L NGV EI ++ Q+ + GLD GEK T LL L E+ Sbjct: 169 GKYRSRKIEDIIEEAKFLSQNGVKEIIIVAQDTTRY---GLDIYGEK-TLPSLLKQLEEV 224 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 G+ +R +P D+++ LI+ L Y+ +P+Q SD +LK M R+ + Sbjct: 225 DGIEWIRLLYCYPEDITEELIEEFARNKKLCKYVDVPIQHISDSVLKRMGRKGNKQLVTK 284 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++ I+ P+++I + IVGFPGE ++DF+ D V++ + FKYS GTP + Sbjct: 285 VLRDIKKRVPEMSIRTSLIVGFPGEMEEDFKELKDFVEEFKFQNLGVFKYSQEEGTPAAT 344 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFN 406 M +QV E +K R L K R+ S N Sbjct: 345 MEDQVLEEIKETRREELMKMQRDIVKSIN 373 >gi|222528975|ref|YP_002572857.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor bescii DSM 6725] gi|222455822|gb|ACM60084.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor bescii DSM 6725] Length = 440 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 136/453 (30%), Positives = 232/453 (51%), Gaps = 35/453 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M G+E ++ +DAD+IV+NTC A ++ + + Sbjct: 8 SLGCNKNLVDSEIMMGACVKAGFEITSNAEDADVIVVNTCGFINDAKQESIDTILDMAEY 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K+ + K ++V GC+ Q +EIL + P ++ ++G + +LPE+++ GK+ + Sbjct: 68 KSKKCK-----FLIVTGCLTQRYKDEILEQMPEIDAILGVKEMLKLPEVIKDLYEGKQKI 122 Query: 151 DTDYSVEDKFERLS-----IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + F LS I Y A++ I EGC+ C++C +P RG SR Sbjct: 123 KV-FDDTSSFVYLSSMPRVIATPSY------YAYIKIAEGCNNRCSYCSIPLIRGKYTSR 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +V EA++L + G EI L Q+ + G L G+K + LL L +I+ + +R+ Sbjct: 176 PIEDIVKEAKELAEKGYQEIVLTAQDTTKY-GLDLYGKKMLHA-LLEELEKIEKIKWIRF 233 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 S+P D+ + LI+ ++ Y +P+Q +DRILK MNR+ T +++I++IR Sbjct: 234 LYSYPEDVDESLIEVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRRS 293 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 ++ I + +VGFP ETD++F + + + +F YS GT S L QVD+ Sbjct: 294 FDEVIIRTTVLVGFPTETDEEFEELCSFLKWAEFDRLGAFMYSQEEGTLASQ-LPQVDDE 352 Query: 386 VKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWL------ 435 V+ E++L +Q+K+ ++Q N VG+ EV+IE K+K +GRS + Sbjct: 353 VRQRRYEKVLNIQRKISKRQ---NKKRVGREYEVVIE--AKDKNNFYIGRSQFEAPEVDG 407 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +V + K G +KV+I D L GE++ Sbjct: 408 KVLVFSQKKLTAGKFVKVKILDAFEYDLVGEII 440 >gi|167767374|ref|ZP_02439427.1| hypothetical protein CLOSS21_01893 [Clostridium sp. SS2/1] gi|167711349|gb|EDS21928.1| hypothetical protein CLOSS21_01893 [Clostridium sp. SS2/1] Length = 440 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 128/446 (28%), Positives = 228/446 (51%), Gaps = 33/446 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + + GC++N Y++ M M G V+ + AD+ ++NTC + A K L Sbjct: 6 KRAAIVTLGCKVNQYETDAMYGMLKEAGVMMVDPKEAADIYIVNTCSVTNMAERKSRQML 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + K+ D++VV GC AQ G+E L + +++++G L +LE Sbjct: 66 HRAK-------KKNPDVVVVAVGCYAQV-GKEELSKDTNIDLIIGNNKKKDLIHILEE-H 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNR----------KRGVTAFLTIQEGCDKFCTFCV 194 G++ E E + ++D +++ K A++ +Q+GC++FC++C+ Sbjct: 117 MGEK--------ESAAESIEVIDIAHDQEYESLHVEQLKEHTRAYIKVQDGCNQFCSYCI 168 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 +PY RG SR + +V++E L +G E + G +V ++ G D T DLL + Sbjct: 169 IPYARGRVRSRKMEEVLEEITNLTKHGCQEFVITGIHVTSY---GKDLGDVTLIDLLEEI 225 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 ++I + R+R + P ++ + ++ P+ HL +QSG D +LK MNR++T + Sbjct: 226 AKIPEVKRIRLGSLEPGFITKDTLDRLSKMESFCPHFHLSLQSGCDSVLKRMNRKYTTQD 285 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 R+ IR A+++D IVGFPGET+++F T +++I + FKYS R GT Sbjct: 286 IREKCKAIREHFQYPALTTDIIVGFPGETEEEFEETRKFLEEIDLYEMHVFKYSIRKGTK 345 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRS 432 ++M Q+++ +KA+R L + ++ Q F +G + EVLIE+ HGK+ G + Sbjct: 346 AADMKPQINDQIKAKRSNVLLEMSKQHQKEFETKQLGMVKEVLIEEKMHGKDH-YYTGHT 404 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDV 458 V L S+ I+KV++ + Sbjct: 405 KEYIKVALYSEEPLENKIVKVKLRQI 430 >gi|253701179|ref|YP_003022368.1| MiaB-like tRNA modifying enzyme [Geobacter sp. M21] gi|251776029|gb|ACT18610.1| MiaB-like tRNA modifying enzyme [Geobacter sp. M21] Length = 429 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 124/399 (31%), Positives = 195/399 (48%), Gaps = 18/399 (4%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + + GC++N ++S M GY V AD+ V+N+C + K + + R Sbjct: 7 ITTLGCKINQFESAAMTQALEQNGYSMVPFSAKADIYVVNSCTVTAKTDAESRRLIRRAT 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L + VVV GC AQ GEE+L+ + VN+++G + LE R Sbjct: 67 RLNP-------EARVVVTGCYAQMNGEELLKLAG-VNLILGNSEKKDIVGFLEGLDDQPR 118 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V +D S+E E + + + AFL +Q GCD C +C+VP+ RG S ++ Sbjct: 119 AVVSDISLEKTGETAPLETFAEHTR----AFLQVQNGCDARCAYCIVPFARGASRSVAVQ 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR-LRYTT 267 + +D G EI L G ++ A+ GLD T L ++ +G VR LR + Sbjct: 175 EALDGMAAFAAQGFQEIVLTGIHLGAY---GLDLAPPTDLLGLMRKAQDQGAVRRLRIGS 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++S LI G + P+LHLP+QSGSD +L MNR + + +++ + S P Sbjct: 232 VEPTEVSRQLIDFMGTSTIACPHLHLPLQSGSDSVLSRMNRGYDTALFAEVVHSLVSAMP 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 ++ I SD I GFPGE+D +F T +D + A F +S R GTP + M QV+ V Sbjct: 292 EVCIGSDVIAGFPGESDREFDETYRFIDSLPLAYLHVFPFSQRPGTPAATMTPQVNPKVI 351 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 ER L+ ++ + VG+ ++VL+++ EKG Sbjct: 352 KERAEALRVLSERKKSDYAAGFVGRELQVLVQR--GEKG 388 >gi|24112201|ref|NP_706711.1| hypothetical protein SF0785 [Shigella flexneri 2a str. 301] gi|81723615|sp|Q83LT1|RIMO_SHIFL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|24051044|gb|AAN42418.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|332760529|gb|EGJ90818.1| RNA modification enzyme, MiaB family protein [Shigella flexneri 2747-71] gi|332768001|gb|EGJ98187.1| SAM-dependent methylase [Shigella flexneri 2930-71] gi|333006987|gb|EGK26482.1| RNA modification enzyme, MiaB family protein [Shigella flexneri K-218] Length = 441 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDA+++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDANMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ +E G+ Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441 >gi|227112051|ref|ZP_03825707.1| hypothetical protein PcarbP_03748 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 437 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 138/463 (29%), Positives = 228/463 (49%), Gaps = 47/463 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDA+L+++NTC + A ++ Sbjct: 4 PRIGFV-SLGCPKNLVDSERILTELRTEGYQVVPRYDDAELVIVNTCGFIDSAVQESLEA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E + I P V + GP +Y ++ + + Sbjct: 63 IGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQVLSHVHQY 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + F L + + G A+L I EGC+ CTFC++P RG Sbjct: 113 --------VPKPTHNPFTSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLD 163 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V+DEA++L+D GV E+ ++ Q+ +A W G+ + K + L Sbjct: 164 SRPIGSVLDEAKRLVDAGVKELLVISQDTSAYGADVKQRTGFWNGQPV---KTSMVSLCE 220 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L+ + VRL Y +P + A G + +PYL +P+Q S +ILK M R Sbjct: 221 QLASLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPKILKLMKRPGAV 277 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I R R + PD+ + S FIVGFPGET++DF+ +D + + + FK+SP G Sbjct: 278 ERTLERIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLTEAKLDRVGCFKFSPVEG 337 Query: 373 TPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427 + + +QV E +K E R + LQ+ + Q++ +G+ + VLI++ +E G+ Sbjct: 338 ASANALPDQVPEEIKEERFHRFMQLQQAISTQRLQDK---IGREVLVLIDEIDEEGAIGR 394 Query: 428 LVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + +P + +V LN + +GDI+KV++ L+G V Sbjct: 395 SMADAPEIDGAVYLNGETGVKVGDIVKVKVEHADEYDLWGSRV 437 >gi|187730809|ref|YP_001880977.1| ribosomal protein S12 methylthiotransferase [Shigella boydii CDC 3083-94] gi|238066604|sp|B2TV93|RIMO_SHIB3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|187427801|gb|ACD07075.1| MiaB-like tRNA modifying enzyme YliG [Shigella boydii CDC 3083-94] Length = 441 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +G+ K + L Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGKPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ +E G+ Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441 >gi|312178702|gb|ADQ39284.1| hypothetical protein nle15_1 [uncultured bacterium] Length = 444 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 125/427 (29%), Positives = 213/427 (49%), Gaps = 39/427 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F +G++RV + AD+ V+NTC + + A + R + + Sbjct: 11 TLGCKLNFSETSTIARSFKDEGFQRVEFSETADIYVINTCSVTDNADK-------RFKTI 63 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGK 147 K + V+ GC AQ + +E L V++V+G +++ L + FG+ Sbjct: 64 VKQAQKVNENAFVIAVGCYAQLKPKE-LAAVDGVDLVLGATEKFKITNYLNDLTKNDFGE 122 Query: 148 ----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + D+ V G Y+ AFL +Q+GCD CT+C +P RGI Sbjct: 123 IHSCEIQEADFYV-----------GSYSFGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 171 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260 S +L V+D A+K+ + + EI L G N+ + GKG G K TF DL+ +L ++G+ Sbjct: 172 SDTLQNVLDNAKKISEKNIREIVLTGVNIGDY-GKGEFGNKKHEHTFLDLVKALDGVEGI 230 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ P + + I + +P+ H+P+QSGS+ +LK+M RR+ Y + Sbjct: 231 ERLRISSIEPNLLKNETIDFVAQSNAFVPHFHIPLQSGSNEVLKNMRRRYMKELYVDRVA 290 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RI+ PD I D IVGFPGETD+ F + + ++ + + F YS R T + M Sbjct: 291 RIKETMPDACIGVDVIVGFPGETDEHFLESYNFLNDLDVSYLHVFTYSERENTVAAEMEG 350 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RS 432 V V+ +R L+ +++ +F ++ +G+ VL E KE G + G ++ Sbjct: 351 VVPLKVRKKRSKMLRGLSAKKRRAFYESQLGKTKTVLFEGENKE-GYIHGFTENYVKVKT 409 Query: 433 PWLQSVV 439 PW +V Sbjct: 410 PWNPGLV 416 >gi|223985672|ref|ZP_03635720.1| hypothetical protein HOLDEFILI_03026 [Holdemania filiformis DSM 12042] gi|223962363|gb|EEF66827.1| hypothetical protein HOLDEFILI_03026 [Holdemania filiformis DSM 12042] Length = 439 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 115/394 (29%), Positives = 206/394 (52%), Gaps = 20/394 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + + GC++N Y+S +GY+ V+ + AD+ ++ TC + AA K + + R Sbjct: 12 ISTLGCKVNAYESESTAQALRQRGYQTVDFKEKADVYIIFTCAVTNTAASKSRQKIHQAR 71 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 ++ D LV GC Q + +++ + I +++VG +LP+L++ A +R Sbjct: 72 -------RQNPDALVCAVGCYVQIQADQMAEQEKI-DILVGSSGKDKLPQLIDEALRQRR 123 Query: 149 ---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V D +FE L + + + + A+L +Q+GC++FC +C++PY RG E S Sbjct: 124 EPIVELHDVRTSAEFEMLPLDEFEHQTR----AYLKVQDGCNQFCAYCIIPYARGRERSL 179 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L + + EAR+L EI L G + + GK D C DL+ + EI+ L R+R Sbjct: 180 PLDEALKEARRLAQKHK-EIVLAGIHTGRY-GKDRDTSLC---DLIRGMCEIEPLERIRI 234 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ +++D L+ + +LH+P+Q+G D LK M R +T ++ ++ IR+ Sbjct: 235 SSIEITEITDELLTLMETQPKIARHLHIPLQAGCDATLKRMGRPYTTAQFMARVEEIRTR 294 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 I+IS+D IVGFP E++ +F ATM + +I ++ F +SP+ GTP M Q+ Sbjct: 295 IDGISISTDLIVGFPQESEAEFAATMAFLKQIQFSFIHVFPFSPKTGTPAQRMSGQISSE 354 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 VK +R + + R + + +G+ ++V+IE Sbjct: 355 VKKQRARQVGEFSRNSYYAVKSSWIGKDVDVIIE 388 >gi|253681883|ref|ZP_04862680.1| conserved hypothetical protein [Clostridium botulinum D str. 1873] gi|253561595|gb|EES91047.1| conserved hypothetical protein [Clostridium botulinum D str. 1873] Length = 444 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 131/439 (29%), Positives = 231/439 (52%), Gaps = 30/439 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + ++ E VN+ ++AD+I++NTC E + ++ + + Sbjct: 10 SLGCDKNRIDSELLLGKL-NENNEIVNNPNEADIIIVNTCGFIETSKQESIDTIIEMAQY 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K+ K +++ GC+ Q +E+ + P +++++G Y + + ++ K + Sbjct: 69 KDKNCK-----MIIATGCLTQRYSKELQQLIPEIDIMLGVNDYANIQDYIDEFFENKNKI 123 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + K+ +SI +G KR +T A++ I EGCD FCT+C++P RG SR Sbjct: 124 -----CKCKYSDVSINEG----KRILTTDKHVAYIRISEGCDNFCTYCIIPKIRGKYRSR 174 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S+ +V EA++L GV E+ L+GQ+ A G+ + E DL+ ++SEI+ + +R Sbjct: 175 SIDSIVKEAKELSAMGVKELILVGQDT-AIYGRDIYSEN-KLPDLIRAISEIESIEWIRV 232 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P +++D LI+ + D + YL +P+Q S+ +LK MNRR T + I ++R+ Sbjct: 233 LYTYPEEITDELIEEIKNNDKVCNYLDIPIQHVSNTVLKRMNRRSTKEIISENIRKMRNE 292 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 D+ + + IVGFPGET+D+F + + +I + FKYS T + M +Q+ E Sbjct: 293 IKDLCLRTSIIVGFPGETEDEFNELKEFIKEIKFDNLGVFKYSQEEDTAAARMKDQISEE 352 Query: 386 VKAERLLCLQKKLREQQVS--FNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL- 440 +K RL L + +QQVS N + ++ +VLIE H E G+ +P + + Sbjct: 353 IKESRLEELM--IIQQQVSKEKNKNKIRKVYKVLIEGHNDEYWIGRNYQMTPEIDGAIFF 410 Query: 441 -NSKNHNIGDIIKVRITDV 458 K N+G+ I ++ITD Sbjct: 411 KCDKILNVGEFIYIKITDA 429 >gi|257465559|ref|ZP_05629930.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus minor 202] gi|257451219|gb|EEV25262.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus minor 202] Length = 444 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 136/456 (29%), Positives = 222/456 (48%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ S GY + S + ADL+++NTC + A ++ +G Sbjct: 12 SLGCPKNLVDSERILTELRSDGYNIIPSYEGADLVIVNTCGFIDSAVQESLESIGEALEA 71 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 V+V GC+ E + I P V + GP +Y + K V Sbjct: 72 NGK---------VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV-----MKHVHKYVP 116 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +Y + + L + G A+L I EGCD CTFC++P RG SRS+ QV Sbjct: 117 KPEY---NPYVNL-VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSIVQV 172 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSD----------LLYSLSEIK 258 +DEA++L+D+GV E+ ++ Q+ +A+ K +G K F + L L + Sbjct: 173 LDEAKRLVDSGVKELLIVSQDTSAYALDKKKEEGTKTVFWNGMPIKNNLITLCEQLGSMG 232 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 VRL Y +P + A G + +PYL +P+Q S +ILK+M R + + Sbjct: 233 VWVRLHYVYPYPHVDDLIPLMAQGKI---LPYLDIPLQHASPKILKAMKRPGSIERTLER 289 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I + R + P++ + S FIVGFPGET++DF+ +D + + + FK+SP G + M Sbjct: 290 IKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKFSPVEGAEATEM 349 Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433 +QV E+VK E R + LQ+++ Q++ +G+ + V++++ E G+ + +P Sbjct: 350 ADQVPEDVKEERFHRFMQLQQEISAQRLQQK---IGKTLAVIVDEIDDEGIIGRSMADAP 406 Query: 434 WLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 + VV L+ +G II V IT+ L+G Sbjct: 407 EIDGVVYVDNLSEMEVTVGQIISVTITNADEYDLWG 442 >gi|298293310|ref|YP_003695249.1| MiaB-like tRNA modifying enzyme [Starkeya novella DSM 506] gi|296929821|gb|ADH90630.1| MiaB-like tRNA modifying enzyme [Starkeya novella DSM 506] Length = 428 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 130/405 (32%), Positives = 203/405 (50%), Gaps = 33/405 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N DS M + G ER +++NTC + +A ++ IR Sbjct: 9 VVTFGCRLNALDSATARAMAGAAGLERA--------VIVNTCAVTGEAVKQARQA---IR 57 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRLPELLERA 143 LK +E + +VV GC AQ E R + + V+ + P+++ L+ Sbjct: 58 RLK----REDPERRIVVTGCAAQTEPAGFARMAEVDGVLGNEEKLSPESWAATRRALD-- 111 Query: 144 RFG-----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPY 197 FG K +V +V + L +DG + G T AF+ +Q GCD CTFC++PY Sbjct: 112 -FGIDNEEKILVGDIMAVRETAPHL--LDGPADTIDGHTRAFVQVQNGCDHRCTFCIIPY 168 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG S + VV+ R L++ G E+ L G ++ +W G L G + + L + Sbjct: 169 GRGNSRSVPMGAVVERVRALVEQGFGEVVLTGVDLTSW-GADLPGTPRLGALVRALLKHV 227 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 L RLR ++ + L++A + + LMP+LHL +Q+G+D ILK M RRH + + Sbjct: 228 PELRRLRLSSIDSIEADGDLLRAFAEEERLMPHLHLSLQAGNDLILKRMKRRHLRRDAIR 287 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +R +RPD+ + +D I GFP ET+ FRA++DLVD G F +SPR GTP + Sbjct: 288 FCAEVRRLRPDMVLGADLIAGFPTETEAQFRASLDLVDACGLTHLHVFPFSPRPGTPAAR 347 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 M + E +K +R L++K E + VG EVL E+ G Sbjct: 348 MPQVAGEVIK-DRARRLREKGAEALLRHLAGEVGMSREVLAERGG 391 >gi|225849025|ref|YP_002729189.1| hypothetical protein SULAZ_1219 [Sulfurihydrogenibium azorense Az-Fu1] gi|225643875|gb|ACN98925.1| conserved hypothetical protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 445 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 121/431 (28%), Positives = 217/431 (50%), Gaps = 21/431 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC+MN +++ +ED F +GY+ + AD+ ++NTC + A L + + Sbjct: 14 TLGCRMNQFETSALEDQFSLKGYDITDFESVADIYIVNTCTVTNDADRTSRKTLRQAK-- 71 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARFGK 147 + + +VV GC AQ +E L + P +++V+G + E++E +F Sbjct: 72 -----RRNPNAIVVATGCYAQVSPQE-LAKIPEIDLVIGNSHKTAVLEIVENYINEKFEN 125 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 +V + E+ F+ + Y R + L +QEGC+ FC+FC++P+ RG S + Sbjct: 126 KVFIDNIFRENDFKTF-FISTFYEGSRPI---LKVQEGCNSFCSFCIIPFARGKVRSAKI 181 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +V++ + L+D G EI L G ++ + G D ++ DLL L ++GL R+R ++ Sbjct: 182 QDIVNQVKFLVDKGYKEIVLTGTQLSQF---GYDHKEGYLLDLLKQLVNVEGLYRIRLSS 238 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++ D LI + + P+ HL +QS DR+LK M R ++ +Y + +++I RP Sbjct: 239 MGINELDDYLIDFLTTQEKIAPHFHLSIQSADDRVLKDMKRNYSVKQYVEKVEKILKNRP 298 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D AI +D I GFP E + F+ T+ V++I +A F YS R T ++V VK Sbjct: 299 DTAIGTDIITGFPTEDETAFKNTVKNVEEIPFAYIHVFTYSMRDNTSAVKFGDRVSPQVK 358 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447 ER L++ + + F +G+ +E LI KE K+ ++ + + + + Sbjct: 359 KERTKILREIGERKSIDFRKKFLGKDMEFLIITE-KEDYKIGLTGNYIHAKI--KTDQPL 415 Query: 448 GDIIKVRITDV 458 I+K ++T V Sbjct: 416 NSIVKSKLTKV 426 >gi|313680806|ref|YP_004058545.1| SSU ribosomal protein s12p methylthiotransferase [Oceanithermus profundus DSM 14977] gi|313153521|gb|ADR37372.1| SSU ribosomal protein S12P methylthiotransferase [Oceanithermus profundus DSM 14977] Length = 443 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 137/455 (30%), Positives = 214/455 (47%), Gaps = 44/455 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ + GY +AD++V+NTC + E+ +G Sbjct: 9 SLGCPKALVDSEQILSRLKAAGYGFAADYAEADVVVVNTCGFITPSIEESLEAIGEAL-- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 G + VVV GC+ A E I ++ P V V GP E R V Sbjct: 67 -------GANGKVVVTGCLG-ARPEVIRKKYPQVIDVSGPA---------ETERVLAAVA 109 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L +V A+L I EGCD C+FC++P RG +SR ++V Sbjct: 110 QVAPPERDPF--LDLVPPQVKLTPRHYAYLKIAEGCDHKCSFCIIPQLRGGLVSRDAAEV 167 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA +L G E+ ++ Q+ +A W G+ + + +DL+ LS + Sbjct: 168 LAEAARLAAGGTRELLVIAQDSSAYGVDLGHRESDWAGRPV---RAHLTDLVRELSGLVP 224 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G L +PYL +P+Q S R+L++M R A + + I Sbjct: 225 WVRLHYVYPYPHVRELLPLMAEGRL---LPYLDVPLQHASPRVLRAMRRPGGAESHLKTI 281 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R+V P++AI S FIVGFPGET+DDF ++ + + + F YSP G + + Sbjct: 282 REWRAVVPELAIRSSFIVGFPGETEDDFELLLEFLAEARLERVGVFTYSPVAGAAANELP 341 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435 V E VK ER + + + + N A VG++++V++++ E G VGR SP + Sbjct: 342 GAVPEEVKQERRARVMELAQRLSLEKNRAKVGRVLDVILDEPADEPGVFVGRSYADSPGI 401 Query: 436 QSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468 V + + +G+I+ VRIT + L GE+V Sbjct: 402 DGTVRVTSDGTVRVGEIVPVRITAADVYDLEGEVV 436 >gi|220936126|ref|YP_002515025.1| 2-alkenal reductase [Thioalkalivibrio sp. HL-EbGR7] gi|219997436|gb|ACL74038.1| 2-alkenal reductase [Thioalkalivibrio sp. HL-EbGR7] Length = 446 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 144/460 (31%), Positives = 222/460 (48%), Gaps = 58/460 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY S +DADL+V+NTC + A E+ +G Sbjct: 18 SLGCPKALVDSERILTQLRAEGYGISPSYEDADLVVVNTCGFIDAAVEESLEAIGEALT- 76 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ AE +++ P V V GP Y + + R Sbjct: 77 ENGR--------VIVTGCLG-AEADKVRDAHPGVLAVTGPHAYEAVMAEVHRHLPPSHA- 126 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 FE L + GG A+L I EGC+ C+FC++P RG +SR + +V Sbjct: 127 --------PFESL-VPLGGVKLTPRHYAYLKISEGCNHRCSFCIIPQFRGDLVSRPVGEV 177 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA L+ GV E+ ++ Q+ +A W+G+ L + L +L + Sbjct: 178 MQEAENLVAAGVKELLIVSQDTSAYGVDVKYRTGFWQGRPL---RTHIQQLAEALGSLGV 234 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G L +PYL +P+Q GS R+LK+M RR A E + + Sbjct: 235 WVRLHYVYPYPHVDQLIPLMAEGKL---LPYLDVPLQHGSPRVLKAM-RRPAASE--KAL 288 Query: 320 DRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +RIR+ R PDI + S FIVGFPGET+D+F + +++ + F YSP G + Sbjct: 289 ERIRAWREICPDITLRSTFIVGFPGETEDEFEELLAFIEEAQLDRVGCFAYSPVEGAAAN 348 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFN----DACVGQIIEVLIEKHGKEKGKLVGRS 432 + + V E VKAERL ++ E Q + + A VG+ + VL++ E G ++ RS Sbjct: 349 ALPDPVPEEVKAERL----ERFMEVQAAISADRLQARVGRTLTVLVDGE-DEDGAIIARS 403 Query: 433 ----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466 P + VV+ + + G I+ V IT L+G+ Sbjct: 404 SSDAPEIDGVVVIEDGEGLEAGQIVDVEITAASEHDLFGK 443 >gi|254526318|ref|ZP_05138370.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Prochlorococcus marinus str. MIT 9202] gi|221537742|gb|EEE40195.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Prochlorococcus marinus str. MIT 9202] Length = 454 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 129/459 (28%), Positives = 238/459 (51%), Gaps = 52/459 (11%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI----REKAAEKVYSFLGRIR 88 GC+ N+ D+ M+ + +GYE ++++DA+++V+NTC RE++ K+ + + + Sbjct: 22 GCEKNLVDTEHMQGLLDKEGYEVDSNINDANVVVVNTCSFIQTAREESIRKILEYTNQGK 81 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 V+VAGC+AQ +E+++ P + V+G Y ++ ++L+R G+ Sbjct: 82 E-------------VIVAGCMAQHFKDELIKEIPEIKGVIGTGDYQKIAKVLDRVEKGEI 128 Query: 149 VVDT----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V + ++ +++ R VD K A+L I EGC+ C FC++P RG + S Sbjct: 129 VNEVSKIPEFIADEEIPRF--VD-----KNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRS 181 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263 R++ +V EA+ L+ G+ EI L+ Q + G+ + G K + + LL LS++ +R+ Sbjct: 182 RTIESIVSEAKSLVKQGIQEIILISQ-ITTNYGQDIYG-KPSLAKLLNELSKVPIPWIRI 239 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P ++D +I+A D ++PY LP+Q +LKSMNR A I+++IR Sbjct: 240 HY--AYPTGLTDEVIRAFRDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIR 297 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P + + IVGFPGE + F ++ +D+ + F +SP GT ++ +V Sbjct: 298 EEIPSAVLRTSLIVGFPGEKKEHFEHLLEFLDRHKFDHVGVFIFSPEEGTAAFDLPNKVS 357 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436 V R ++ +Q+ + + + N + VG +++L+EK + +L+GR+ P + Sbjct: 358 PEVAEARKDNVISVQQNISKDK---NQSYVGLKMKILVEKIS-DNNELIGRTYNFAPEID 413 Query: 437 SVVLNS-------KNHNIGDIIKVRITDVKISTLYGELV 468 V+ S KN+ IG ++ I+ LYGE + Sbjct: 414 GTVILSVKDKIDLKNY-IGKFVEANISFADEYDLYGETI 451 >gi|30062317|ref|NP_836488.1| hypothetical protein S0828 [Shigella flexneri 2a str. 2457T] gi|30040562|gb|AAP16294.1| hypothetical protein S0828 [Shigella flexneri 2a str. 2457T] gi|281600159|gb|ADA73143.1| protein yliG [Shigella flexneri 2002017] gi|313650263|gb|EFS14675.1| RNA modification enzyme, MiaB family protein [Shigella flexneri 2a str. 2457T] gi|332763044|gb|EGJ93289.1| RNA modification enzyme, MiaB family protein [Shigella flexneri K-671] gi|333020987|gb|EGK40245.1| RNA modification enzyme, MiaB family protein [Shigella flexneri K-304] Length = 441 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDA+++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDANMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LMSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ +E G+ Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441 >gi|323137219|ref|ZP_08072298.1| MiaB-like tRNA modifying enzyme YliG [Methylocystis sp. ATCC 49242] gi|322397577|gb|EFY00100.1| MiaB-like tRNA modifying enzyme YliG [Methylocystis sp. ATCC 49242] Length = 449 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 141/474 (29%), Positives = 222/474 (46%), Gaps = 43/474 (9%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 M + P+ FV S GC + DS R+ ++GYE + AD++V+NTC Sbjct: 1 MQEDLKPNSAAPRVSFV-SLGCPKALVDSERIVTRLRAEGYELARRHEGADVVVVNTCGF 59 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 + A + +G + + E G V+V GC+ AE E I R P V + GPQ Sbjct: 60 LDSAKAESLEAIG-------AALSENGK--VIVTGCMG-AEPEAIAERFPEVLAITGPQQ 109 Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 Y + E + RA D F L + + G A+L I EGCD C+F Sbjct: 110 YESVVEAVHRAV---------APAHDPFVDL-VPEQGVKLTPRHYAYLKISEGCDNSCSF 159 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD------GEKCT 246 C++P+ RG +SR ++V+ EA KL GV E+ ++ Q+ +A+ G+ L G++ Sbjct: 160 CIIPHLRGPLVSRPAAEVLREAEKLARAGVKELLVISQDTSAY-GRDLRYVESMLGDRAV 218 Query: 247 ---FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 F DL L E+ RL Y +P + G + +PYL +P Q + +L Sbjct: 219 RARFLDLARELGELGLWTRLHYVYPYPHVDEVIGLMTEGKI---LPYLDIPFQHAAPNVL 275 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 K+M R + I R+ PD+A+ S FIVGFPGET++DF+ +D +D+ +A Sbjct: 276 KAMKRPANEEKTLARIKAWRAACPDLALRSTFIVGFPGETEEDFQLLLDWLDEAEIDRAG 335 Query: 364 SFKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 +FKY P G P + + L V E VK R +K + VG+ ++V+I++ G Sbjct: 336 AFKYEPVSGAPANELGLAPVPEEVKEARWKRFMEKQQAVSARLMKRKVGKRLQVIIDEAG 395 Query: 423 K------EKGKLVGRSPWL--QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 KG+ +P + + V + + GDI+ V++ +YG V Sbjct: 396 GGPSGALAKGRTKADAPQIDGAAFVESRRPLRPGDIVTVKVDRADAYDVYGAAV 449 >gi|15605955|ref|NP_213332.1| hypothetical protein aq_474 [Aquifex aeolicus VF5] gi|6226379|sp|O66772|Y474_AQUAE RecName: Full=Putative methylthiotransferase aq_474 gi|2983129|gb|AAC06733.1| hypothetical protein aq_474 [Aquifex aeolicus VF5] Length = 410 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 124/395 (31%), Positives = 211/395 (53%), Gaps = 26/395 (6%) Query: 30 KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR----EKAAEKVYSFLG 85 ++ GC+MN +D+ +++ F +GYE V+ D AD+ V+NTC + + + +Y Sbjct: 6 ETLGCRMNQFDTDLLKNKFIQKGYEVVSFEDMADVYVINTCTVTVGGDRSSRQAIYQ--A 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143 + RN K +VV GC AQ +E+ + V++VVG L ++LE Sbjct: 64 KRRNPKA---------IVVATGCYAQVNPQELAKLKE-VDLVVGNTHKSELLKILEEYLE 113 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R K+VV + E + V GV FL +QEGC+KFCTFCV+PY RG Sbjct: 114 RREKKVVVGEIFREKEVRNFDTVLYF----EGVRPFLKVQEGCNKFCTFCVIPYARGKVR 169 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S L ++V + + L G E+ L G ++ + G D ++ LL L +I+G+ + Sbjct: 170 SVDLEKIVHQVKLLAQKGFKEVVLTGTQLSQY---GWDKGYNLYT-LLTELIKIEGIELI 225 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ H ++M L+K + + P+ HL +QSGS+RIL+ M+R +T EY ++++ I Sbjct: 226 RLSSMHIKEMDKELLKLIVSEEKIAPHFHLSLQSGSNRILELMDRGYTREEYEEVVNFIV 285 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 RP +I +D IVGFP E+++DF+ T + + +I + F YS R T S + ++ Sbjct: 286 ENRPISSIGTDVIVGFPTESEEDFQETYEFLKRIPISYMHIFPYSDRPFTKASKLKPKLP 345 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 E +K ER+ L++ ++++ F + G+ + L+ Sbjct: 346 ERIKKERVRILKELDQKKRQEFYEKNKGKELRALV 380 >gi|291616854|ref|YP_003519596.1| YliG [Pantoea ananatis LMG 20103] gi|291151884|gb|ADD76468.1| YliG [Pantoea ananatis LMG 20103] gi|327393280|dbj|BAK10702.1| 2-methylthioadenine synthetase YliG [Pantoea ananatis AJ13355] Length = 442 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 134/452 (29%), Positives = 229/452 (50%), Gaps = 48/452 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P R S GC N+ DS R+ ++GYE V DDA+++++NTC + A ++ Sbjct: 7 LPPRVGFVSLGCPKNLVDSERILTELRTEGYEVVPRYDDAEIVIVNTCGFIDSAVQESLE 66 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N E G V+V GC+ A+ ++I P V + GP +Y ++ L Sbjct: 67 AIGEALN-------ENGK--VIVTGCLG-AKVDQIREVHPKVLEITGPHSYEQV--LSHV 114 Query: 143 ARFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R+ + + LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 115 HRYVPKPQHNPF--------LSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 166 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 SR++ +V+DEA++L++ GV E+ ++ Q+ +A W G + K + L Sbjct: 167 LDSRAIGEVLDEAKRLVEAGVKELLVISQDTSAYGVDVKHRTGFWNGAPV---KTSMVSL 223 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L+++ VRL Y +P + A G + +PYL +P+Q S RILK M R Sbjct: 224 CEQLAKLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPG 280 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + I R R + P++ + S FIVGFPGET++DF+ +D + + + F+YSP Sbjct: 281 AVERTLERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFIKEARLDRVGCFQYSPV 340 Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425 G + + + VDE VK E R + LQ+++ +++ VG+ I V+I++ +E Sbjct: 341 EGATANQLPDPVDEAVKQERYDRFMQLQQQISAERLQEK---VGREIMVIIDEVDEEGAI 397 Query: 426 GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRI 455 G+ + +P + V + N+ GD+++V++ Sbjct: 398 GRSMADAPEIDGAVYLNGESNVKPGDVLRVKV 429 >gi|152969423|ref|YP_001334532.1| ribosomal protein S12 methylthiotransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893892|ref|YP_002918626.1| ribosomal protein S12 methylthiotransferase [Klebsiella pneumoniae NTUH-K2044] gi|262041072|ref|ZP_06014291.1| MiaB family RNA modification enzyme [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330008410|ref|ZP_08306227.1| ribosomal protein S12 methylthiotransferase RimO [Klebsiella sp. MS 92-3] gi|238066343|sp|A6T6T1|RIMO_KLEP7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|150954272|gb|ABR76302.1| hypothetical protein KPN_00866 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546208|dbj|BAH62559.1| hypothetical protein KP1_1825 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041630|gb|EEW42682.1| MiaB family RNA modification enzyme [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535155|gb|EGF61659.1| ribosomal protein S12 methylthiotransferase RimO [Klebsiella sp. MS 92-3] Length = 441 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 237/462 (51%), Gaps = 51/462 (11%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V + D+AD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPTYDNADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G +KE G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEA-------LKENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y+ + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YTPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDL 250 +SR + +V+ EA++L D GV E+ ++ Q+ +A+ G+D + K + L Sbjct: 166 LVSRPIGEVLAEAKRLADAGVKELLVISQDTSAY---GVDVKHRTGFHNGMPVKTSMVSL 222 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L+++ VRL Y +P + A G + +PYL +P+Q S RILK M R Sbjct: 223 CEELAKLGIWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPG 279 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 +A I + R + PD+ + S FIVGFPGET++DF+ +D + + + FKYSP Sbjct: 280 SADRQLARIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPV 339 Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425 G + + +QV E VK E R + LQ+++ +++ VG+ I VL+++ +E Sbjct: 340 EGATANELADQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVLVDEVDEEGAI 396 Query: 426 GKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465 G+ + +P + +V LN + GD+++V++ L+G Sbjct: 397 GRSMADAPEIDGAVYLNGETRVKPGDVVRVKVEHADEYDLWG 438 >gi|224371857|ref|YP_002606023.1| 2-methylthioadenine synthetase [Desulfobacterium autotrophicum HRM2] gi|223694576|gb|ACN17859.1| 2-methylthioadenine synthetase [Desulfobacterium autotrophicum HRM2] Length = 441 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 148/459 (32%), Positives = 228/459 (49%), Gaps = 37/459 (8%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLG 85 F++S GC N DS M S G+ V+ AD+I++NTC I +AE V + L Sbjct: 3 IFLESLGCCRNQVDSEVMLGRLASAGHGIVHDPSQADVIIVNTCGFISAASAEAVDTILD 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ R K +VV GC+ + + +++ P V+V +G + ++E Sbjct: 63 MAVYKRDGRCKR-----LVVTGCLPERFKHDDLGGELPEVDVFLGTGACDEIVRVVEST- 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRG 200 G V+ V D R G+ R +T A + I EGCD+ CT+C++P RG Sbjct: 117 -GSMVL-----VPDVLARQM---QGHPLPRCLTLDYLAHVKISEGCDRHCTYCIIPRLRG 167 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKG 259 I+ SR + VV E+ L+ NGV EI L+G+N + + G LDGE + LL +LS+ IK Sbjct: 168 IQRSRGVDAVVTESELLVKNGVKEIVLVGENTSDY-GVDLDGE-VNLAGLLTTLSQRIKA 225 Query: 260 L-----VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 L +RL YT HP + +I+ LD + Y +P+Q S RIL+ M R +T + Sbjct: 226 LDPDVWIRLLYT--HPSSLDFDVIRVIAGLDNVCTYFDVPIQHASSRILRRMGRNYTRED 283 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 ++I IR PD A+ + I GFPGET+ DF + V +I + Q F YS Sbjct: 284 LDRLIAFIRKTAPDAALRTTLITGFPGETEADFNELLAFVKEIRFDQLGVFAYSDSDDLA 343 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432 + + VDE R + E S N+A +G+ VL+E++ E G +GR+ Sbjct: 344 SHGLKDHVDEETGEARRDAIMAAQAEISESLNEAYLGKTFTVLVEENPDE-GIFLGRTNF 402 Query: 433 --PWLQSVV-LNSKNHNIGDIIKVRITDVKISTLYGELV 468 P + + + +N +IG ++V+IT+ L GELV Sbjct: 403 QAPEVDGITFIYGENIDIGTFVRVKITETHAYDLVGELV 441 >gi|187251699|ref|YP_001876181.1| MiaB family RNA modification enzyme [Elusimicrobium minutum Pei191] gi|186971859|gb|ACC98844.1| RNA modification enzyme, MiaB family [Elusimicrobium minutum Pei191] Length = 409 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 128/448 (28%), Positives = 224/448 (50%), Gaps = 44/448 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K++GC++N +S + + F QG ++ + AD+ +LNTC + KA V Sbjct: 2 KKVFIKTFGCRVNQVESQALREEFLKQGCSFTDAFETADICLLNTCTVTAKADSDVEKLA 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 RI N +N + +++ GC A A +I + P E++ + Sbjct: 62 RRITN-RNPMAR------LILTGCYAAAHEGKIKQNLPSA-------------EIINKHN 101 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K + DTD D F +S G R R AF+ IQ+GCD FC++C++P+ R ++S Sbjct: 102 IAKTLFDTD----DDFWAVS---GNEGRSR---AFIKIQDGCDNFCSYCIIPFARNKKLS 151 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + + V+E ++LI G EI L G N+ + + + LL + +I+G R+R Sbjct: 152 KPIPSTVNEIKELISKGFKEIVLTGINIGNYLCPQTGAD---LAVLLKEIFKIEGEYRIR 208 Query: 265 YTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 +++ ++D L+ A + Y H+P+QSGSD +LK MNRR+ +Y + I I+ Sbjct: 209 FSSIELNTVTDSLLAAAKEGGSKFCNYFHIPLQSGSDLVLKDMNRRYLTKDYAKRIGEIK 268 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM--LEQ 381 ++ P I I +D I G+P ET+++F + + + ++ F YS R GT +N+ L Sbjct: 269 AMFPGIGIYADIIAGYPVETEEEFEKSYNFIKEVALNGLHVFSYSVRPGTKAANLPQLNP 328 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVL 440 V+ ++++L L LR + + GQ +E L+E ++KG+ G + V Sbjct: 329 VEIKKRSDKLRELDFTLRCEFAALQK---GQTLETLVE---RKKGEFNTGVAGNFVRVDF 382 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 K G ++KV+I K GE++ Sbjct: 383 KGK-AKAGSLVKVKIISFKDGVCIGEML 409 >gi|24213088|ref|NP_710569.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai str. 56601] gi|45656240|ref|YP_000326.1| hypothetical protein LIC10336 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24193787|gb|AAN47587.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai str. 56601] gi|45599474|gb|AAS68963.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 437 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 116/402 (28%), Positives = 205/402 (50%), Gaps = 19/402 (4%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 I Q + GC++N ++S + GY S + +++++NTC + KA K Sbjct: 5 IAEQTVLFNTLGCRLNFFESDGLFASLSKHGYRSAKSEEHPEVVIINTCTVTNKADSKN- 63 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 RN + IK+ + V GC A+ + E I P V VVG +LP ++ Sbjct: 64 ------RNTIRNAIKKFPGSQIWVTGCYAETDRESI-EAIPGVAGVVGNTEKSKLPAMIL 116 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R + + D+F ++ G+ R A+L IQ+GC++ C++C +P RG+ Sbjct: 117 EKRGLIEESELVGKIFDRFSYSDVLPNGHTR-----AYLKIQDGCNRKCSYCKIPQARGL 171 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGL 260 +SR+ V+D+ R L DNGV EI L G N+ +R D E K F+ +L + I Sbjct: 172 GVSRNYQDVLDQVRFLQDNGVGEIVLTGVNLGWYR----DSENKKAFNKILGEILNILEY 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R ++ P D+ + L++ P+LH+P+QSG+ ILK M R +T +R+ ++ Sbjct: 228 SRIRISSIEPPDVGNELVELMTH-PRFTPFLHIPLQSGNSEILKKMKRTYTPETFRKRVE 286 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + P++ + +D IVGFPGET++ F+ ++ ++ +G+A+ +F +S R T + Sbjct: 287 IAKEKIPNLFLGTDIIVGFPGETEEMFQDSVSMIRDLGFAKIHTFPFSVRRNTLAETFPD 346 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 V + +K ER+ L RE + + + ++ E ++E+ G Sbjct: 347 SVSKEIKKERVHTLNSLSRELHQKYALSEIEKVREAILEQGG 388 >gi|148255523|ref|YP_001240108.1| ribosomal protein S12 methylthiotransferase [Bradyrhizobium sp. BTAi1] gi|238065295|sp|A5EJ58|RIMO_BRASB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|146407696|gb|ABQ36202.1| SSU ribosomal protein S12P methylthiotransferase [Bradyrhizobium sp. BTAi1] Length = 441 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 148/473 (31%), Positives = 233/473 (49%), Gaps = 56/473 (11%) Query: 18 VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 + Q P+ FV S GC + DS R+ ++GYE D AD++++NTC + A Sbjct: 1 MQQGSAPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADVVIVNTCGFLDSAK 59 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 ++ S +G S + E G V+V GC+ AE E+I + P V + GPQ Y + Sbjct: 60 QESLSAIG-------SAMAENGK--VIVTGCMG-AEPEQIEQAYPGVLSITGPQQYESVL 109 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 E + RA S L +V G A+L I EGC+ CTFC++P Sbjct: 110 EAVHRA-----------SPPIHNPHLDLVPPQGIKLTPRHYAYLKISEGCNNRCTFCIIP 158 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKC 245 RG +SR + V+ EA +L+ GV E+ ++ Q+ +A W+ + + + Sbjct: 159 KLRGDLVSRPAADVLREAERLVAAGVKELLVISQDTSAYGLDLKYAESSWKDRSV---RA 215 Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 F DL L E+ VRL Y +P + A G + +PYL +P Q S +LK+ Sbjct: 216 RFLDLARELGELGAWVRLHYVYPYPHVDEVVGLMAEGRV---LPYLDIPFQHASPNVLKA 272 Query: 306 MNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 M RR A + + +DRI+S R PD+A+ S FIVGFPGETD DF +D +D+ + Sbjct: 273 M-RRPAAQD--KTLDRIKSWRAACPDLALRSTFIVGFPGETDADFAYLLDWLDEAEIDRL 329 Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE 419 FKY P G + + +QV + VK ER L+ Q+K+ +++ VG +++I+ Sbjct: 330 GCFKYEPVAGATSNALPDQVPDEVKQERWNALMARQQKISARRLKRK---VGTRQQIIID 386 Query: 420 KHGK--EKGKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + G KG+ +P + SV ++S+ +G+I+ RI L+G + Sbjct: 387 EVGPTVAKGRSKADAPEIDGSVYVSSRRPLRVGEIVTARIERADEYDLHGTVA 439 >gi|161503979|ref|YP_001571091.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|238066586|sp|A9MIP6|RIMO_SALAR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|160865326|gb|ABX21949.1| hypothetical protein SARI_02072 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 441 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ + + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + + L Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMASLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWRDICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V++++ +E G+ Sbjct: 343 GANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ + L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441 >gi|206901646|ref|YP_002251045.1| hypothetical protein DICTH_1216 [Dictyoglomus thermophilum H-6-12] gi|206740749|gb|ACI19807.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12] Length = 417 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 122/398 (30%), Positives = 206/398 (51%), Gaps = 53/398 (13%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y++ ++ + + G+E V ADLI +N+C + A K + I+N Sbjct: 8 TFGCKVNQYETEHLKILARNLGFEVVPFGQKADLIFINSCAVTHVAERKARRLINFIKN- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + +++AGC + ER + ++ Sbjct: 67 ------HFPEAKIILAGCYS------------------------------ERLKLSSEII 90 Query: 151 DTDYSVEDKFERLSIVDGGYN-----RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 D +++K E+ G N + A L IQ+GC+ FC++C+VPY RG E S+ Sbjct: 91 PVDLILDNK-EKWRFFGGDENSGFVSSEDRARAILKIQDGCNNFCSYCIVPYLRGRERSK 149 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 L +VV+EA+KL+++G EI L G + + G D G+K LL +L EI GL ++R Sbjct: 150 PLDKVVEEAKKLVESGFKEIILTGIRLGTY---GSDWGDKDALYKLLLNLFEIDGLAKIR 206 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P D+++ LI+ D L + H+P+QSG D ILK MNRR+ + II ++R Sbjct: 207 LSSIEPMDITENLIEL-ADHPKLCKHWHIPLQSGDDDILKKMNRRYDTKYFENIIYKLRE 265 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+IAI++D IVG+P E++++F T +KIG+ + F +SPR T ++ E Sbjct: 266 KVPNIAITTDIIVGYPEESEENFNNTYLFAEKIGFMRIHVFPFSPRPFTKAYDLKPLPYE 325 Query: 385 NV--KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + + E+L+ L KL + VS +G+ IEV++E+ Sbjct: 326 IITKRKEKLIKLSSKLWKTYVS---KFLGKEIEVMVEE 360 >gi|332185732|ref|ZP_08387479.1| RNA modification enzyme, MiaB family protein [Sphingomonas sp. S17] gi|332014090|gb|EGI56148.1| RNA modification enzyme, MiaB family protein [Sphingomonas sp. S17] Length = 446 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 138/460 (30%), Positives = 214/460 (46%), Gaps = 44/460 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P R + S GC N+ DS R+ + GY+ AD++++NTC + A E+ Sbjct: 7 TPPRVGMVSLGCPKNLVDSERILTQLRADGYQMSPDYAGADVVLVNTCGFLDSAKEESLE 66 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G IKE G V+V GC+ + E E I R P V + G Y ++ E + Sbjct: 67 AIGEA-------IKENGR--VIVTGCMGK-EAEAIRTRFPDVLAITGAHEYEQVVEAVHA 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D I D G ++L I EGC+ C+FC++P RG Sbjct: 117 AAPANLSPYIDL----------IPDAGLKLTPRHYSYLKISEGCNHRCSFCIIPSLRGDL 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR ++ EA KL+ G E+ ++ Q+ +A W+G+ + +DL Sbjct: 167 VSRRPDAILREAEKLVAAGTRELLVISQDTSAYGIDIRKEPRMWKGQEV---VPHMTDLA 223 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L +I VRL Y +P + A G +++PYL +P Q + +L+ M R Sbjct: 224 RELGKIAPWVRLHYVYPYPHVDQVIPLMAEG---LVLPYLDIPFQHAAPSVLRRMKRPGN 280 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + Q I + R + PDIAI S F+VGFPGET++DF +D +D+ + +F++ P Sbjct: 281 DAKVLQRIHQWRDICPDIAIRSTFVVGFPGETEEDFEYLLDWLDEAQLDRVGAFRFEPVE 340 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 G + + + V E VK ER + +K + A VG+ + V+I+ E+G GR Sbjct: 341 GAAANALPDHVPEEVKEERYARIMEKTAAISAAKLAAKVGRTLPVIIDA-VDEEGGATGR 399 Query: 432 S----PWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465 S P + V L H ++GDI+KV I D LYG Sbjct: 400 SQADAPEIDGEVFLRDAGHLSVGDIVKVEIEDADEHDLYG 439 >gi|295092195|emb|CBK78302.1| MiaB-like tRNA modifying enzyme [Clostridium cf. saccharolyticum K10] Length = 443 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 141/444 (31%), Positives = 230/444 (51%), Gaps = 37/444 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+ M GYE V + AD+ V+NTC + A +K L R + + Sbjct: 10 GCKVNAYETEAMQQMLEDAGYEIVPFREGADVYVINTCSVTNVADKKSRQMLHRAKKMNP 69 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD- 151 S + VV AGC QA GEE L++ V++V+G L E+LER D Sbjct: 70 SAV-------VVAAGCYVQAAGEE-LKKDEAVDLVIGNNRKKDLVEVLERYFNEHEGTDD 121 Query: 152 -TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D ++E+L I + + AF+ +Q+GC++FC++C++PYTRG SRS+ V Sbjct: 122 IIDIGKTSEYEKLHIRKIADHTR----AFIKVQDGCNQFCSYCIIPYTRGRVRSRSMEDV 177 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--------FSDLLYSLSEIKGLVR 262 V E L +G EI L G +++++ G D ++ L+ L I G+ R Sbjct: 178 VQEVEALAASGYKEIVLTGIHLSSY---GADFKRTAENPEAAADLLSLIVRLDRIPGIER 234 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R + PR ++D + L P+ HL +QSG + LK MNR +T +Y + + Sbjct: 235 IRLGSLEPRIITDEFAETLAGLKSFCPHFHLSLQSGCNETLKRMNRHYTTEDYEARCEIL 294 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + AI++D IVGFP ET+++F T + +I + + FKYS R GT + M QV Sbjct: 295 RRYFHNPAITTDVIVGFPQETEEEFEETRQFLKRIHFYEMHIFKYSRREGTRAAVMEGQV 354 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRS-PWLQ 436 E KAER LL L++++ + + +G+ EVL+E+ G+ +VG + +++ Sbjct: 355 PEPKKAERSDILLALEEQM---SLEYRRTFLGKEEEVLLEERISVDGEDYMVGHTRQYVK 411 Query: 437 SVVLNS---KNHNIGDIIKVRITD 457 +VV KN + +++ +TD Sbjct: 412 AVVPYREGLKNVTVRGVMERMVTD 435 >gi|237807752|ref|YP_002892192.1| 30S ribosomal protein S12 methylthiotransferase [Tolumonas auensis DSM 9187] gi|237500013|gb|ACQ92606.1| MiaB-like tRNA modifying enzyme YliG [Tolumonas auensis DSM 9187] Length = 442 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 238/462 (51%), Gaps = 43/462 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC N+ D+ R+ ++GY+ VN+ D+A+L+++NTC + A ++ Sbjct: 7 APKVGFV-SLGCPKNLVDAERILTQLRTEGYDVVNNYDNAELVIVNTCGFIDSAVQESLE 65 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G ++E G V+V GC+ E ++I P V + GP Y ++ L Sbjct: 66 AIGEA-------LQENGK--VIVTGCLGAKE-DQIREVHPKVLEISGPHAYEQV--LSHV 113 Query: 143 ARFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 ++ + + LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 114 HKYAPKPEHNPF--------LSLVPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 SR++ +V+ EA++L + GV EI ++ Q+ +A+ R +G K + L Sbjct: 166 LDSRAIGEVLGEAKRLKNAGVKEILVISQDTSAYGADVKHRTGFYEGSPVKTSMIALCEE 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 L+++ VRL Y +P + A G + +PYL +P+Q S RILK M R Sbjct: 226 LAKMGMWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGAIE 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + I R + PD+ + S FIVGFPGET++DF+ +D ++K + FKYSP G Sbjct: 283 RTLERIQEWRRICPDLTLRSTFIVGFPGETEEDFQMLLDFLEKAELDRVGCFKYSPVDGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + + V E VK E R + LQ+K+ ++++ A +G+ ++V++++ +E G+ Sbjct: 343 KANELPDPVPEEVKEERFHRFMELQQKISARRLA---AKIGRELDVIVDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVV-LNSKNH-NIGDIIKVRITDVKISTLYGELV 468 +P + VV LN + GDI+KV+I + L+G +V Sbjct: 400 FADAPEIDGVVYLNGETTLKPGDIVKVKIENSDEYDLWGTVV 441 >gi|225018731|ref|ZP_03707923.1| hypothetical protein CLOSTMETH_02681 [Clostridium methylpentosum DSM 5476] gi|224948459|gb|EEG29668.1| hypothetical protein CLOSTMETH_02681 [Clostridium methylpentosum DSM 5476] Length = 409 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 124/427 (29%), Positives = 222/427 (51%), Gaps = 20/427 (4%) Query: 44 MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103 M D+F+ GY+ V+ D+AD+ V+N+C + +K L R + + D +V Sbjct: 1 MMDLFYQSGYDVVHCDDEADVYVVNSCTVTSSGDKKARQALRRFK-------RANPDAVV 53 Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-RFGKRVVD-TDYSVEDKFE 161 + GC QA ++ ++ P +V+ G + + RA G+RV++ T + + FE Sbjct: 54 ALTGCFPQA-FPDVDKQIPEADVITGSYNRAGIVSAVRRALETGERVIEITPHKKGESFE 112 Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221 +++ V R R AF+ I++GCD++CT+C++P RG S+ ++++ +E R L NG Sbjct: 113 KMA-VKKFSERTR---AFVKIEDGCDRYCTYCIIPKARGPVRSKQMAELREELRDLAANG 168 Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281 E+ L+G N++++ G D E D + + G+ R+R + P ++ I+ Sbjct: 169 YKEVVLVGINLSSY---GRDLENTRLIDAVRLACSVDGIERVRLGSLEPELLTGEDIQTL 225 Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341 L P HL +QSG D LK MNR + + EY +I+ IR+ + +I++D +VGFPG Sbjct: 226 ASLPKFCPQFHLSLQSGCDATLKRMNRHYDSAEYLRIVQDIRTAFDNPSITTDIMVGFPG 285 Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401 ET+++F ++ +++G A+A F YS R GT + M Q+ VK +R + + Sbjct: 286 ETEEEFAQSLAFAERVGLAKAHVFPYSVREGTAAARM-PQLGGEVKQQRAAEMARLTDRT 344 Query: 402 QVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIS 461 + +F + +G+ EVL E ++ G G + V++ S+ G I V+I + Sbjct: 345 RRAFLETQLGRTEEVLFET--EQDGYYHGYTKNYTPVLVKSEEALCGQIKCVKIESIVEE 402 Query: 462 TLYGELV 468 G+L+ Sbjct: 403 KCLGKLL 409 >gi|295092927|emb|CBK82018.1| MiaB-like tRNA modifying enzyme [Coprococcus sp. ART55/1] Length = 452 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 115/388 (29%), Positives = 205/388 (52%), Gaps = 27/388 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ M DM + G V + AD+ ++NTC + A +K L R R + Sbjct: 11 TLGCKVNQAETDSMLDMLKAAGANIVEFDEKADIYIVNTCSVTNIADKKSRQMLHRARKM 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---------E 141 D +V+ AGC Q+ EIL + +++V+ + E++ E Sbjct: 71 -------NPDGIVIAAGCYVQS-AREILEQDEAIDIVISNNKKKSITEIVNDYINVRNNE 122 Query: 142 RARFGKRVVDTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 + GK +Y V E ++E + GG+ A++ IQ+GC++FC++C++PY Sbjct: 123 KNAPGKDHEAMEYFVDISRETEYEEM----GGHVPVGHTRAYVKIQDGCNQFCSYCIIPY 178 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG SRS ++ E +L + G+ E+ L G +++++ GK + E +L+ ++S+I Sbjct: 179 VRGRIRSRSQEAILAEVSELAEAGIKEVVLTGIHISSY-GKDKNNEGALI-ELIEAISKI 236 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 KG+ R+R + P +++ ++ + P+ HL +QSG D +LK MNR++T +Y + Sbjct: 237 KGIKRIRLGSLEPGIITEEFVERISSNSKVCPHFHLSLQSGCDSVLKRMNRKYTCEQYFE 296 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 D +R A+++D IVGFPGET+++F T+ + ++ + FKYSPR GT + Sbjct: 297 KCDMLRKAYKSPALTTDVIVGFPGETEEEFAETVRYLTELNLYEMHIFKYSPRKGTVAAA 356 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSF 405 M EQV +K ER L K + + ++ Sbjct: 357 MKEQVAPEIKNERSDVLLKLAHDNKTAY 384 >gi|291281834|ref|YP_003498652.1| hypothetical protein G2583_1065 [Escherichia coli O55:H7 str. CB9615] gi|331672336|ref|ZP_08373127.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA280] gi|209775584|gb|ACI86104.1| hypothetical protein ECs0915 [Escherichia coli] gi|290761707|gb|ADD55668.1| UPF0004 protein yliG [Escherichia coli O55:H7 str. CB9615] gi|320659743|gb|EFX27299.1| ribosomal protein S12 methylthiotransferase [Escherichia coli O55:H7 str. USDA 5905] gi|331070531|gb|EGI41895.1| putative Fe-S oxidoreductase family 1 [Escherichia coli TA280] Length = 441 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + + V E VK E R + LQ+++ +++ VG+ I V+I++ +E G+ Sbjct: 343 DANALPDPVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441 >gi|33239573|ref|NP_874515.1| 2-methylthioadenine synthetase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81665118|sp|Q7VE92|RIMO_PROMA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|33237098|gb|AAP99167.1| 2-methylthioadenine synthetase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 434 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 134/456 (29%), Positives = 224/456 (49%), Gaps = 45/456 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYSFLGRIRNLK 91 GC+ N+ D+ M + GY + +A L+V+NTC I++ E V +G K Sbjct: 4 GCEKNLVDTEHMMGLLDQGGYSISTNPSEASLVVVNTCSFIQDAREESVRVLVGLAEQDK 63 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV- 150 +++AGC+AQ EE+L+ P ++G Y + +L+R G+ V Sbjct: 64 E----------IIIAGCLAQHFQEELLQSIPEAKAIIGTGDYQNILNVLQRIEQGEIVNQ 113 Query: 151 ---DTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + ++K R R G A+L I EGCD C FC++P RG++ SRS Sbjct: 114 VSNNPTFVGDEKLPRF--------RTTGKAVAYLKIAEGCDYSCAFCIIPKLRGMQRSRS 165 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRY 265 + +V EA +L GV E+ L+ Q + G L G C +DLL L +++ +R+ Y Sbjct: 166 IESIVAEANQLAKQGVKELILISQITTNY-GLDLYGRPC-LADLLRELGDVEIPWIRVHY 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P ++ +IKA ++ L+PYL LP+Q +L+ MNR ++DRIRS Sbjct: 224 --AYPTGLTSEVIKAFREVPNLLPYLDLPLQHSHPDVLRLMNRPWQLDLNASLLDRIRSE 281 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD + IVGFPGET++ F + V + F +S GT +++ Q+ + Sbjct: 282 LPDAIFRTSLIVGFPGETEEHFNHLVSFVQTQQFDHIGVFTFSSEAGTKAASLANQIPFS 341 Query: 386 V---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438 V + ++++ +Q+ + E + N +G+ ++VLIE+ K+ + VGR SP + Sbjct: 342 VAEARKDKIISIQQPIAELK---NQNWIGRTVDVLIEREDKDSAEFVGRCARFSPEVDGF 398 Query: 439 VLNSKNH------NIGDIIKVRITDVKISTLYGELV 468 V N+ NIG + IT + L G++V Sbjct: 399 VRLQINNTFTNQLNIGMMTPALITGADLYDLTGQVV 434 >gi|293400696|ref|ZP_06644841.1| Fe-S oxidoreductase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305722|gb|EFE46966.1| Fe-S oxidoreductase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 441 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 119/409 (29%), Positives = 217/409 (53%), Gaps = 21/409 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + + GC++N Y+S E ++GY++V+ + AD+ ++NTC + A K + + Sbjct: 4 FAIATLGCKVNTYESQGYESALLAKGYQQVSFKEKADVYIINTCAVTNTAGSKSRQKIHQ 63 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + L + L+ V GC Q E+ L + V++++G L + +E+A G Sbjct: 64 AKALNQ-------NALIAVVGCYVQTAKEQ-LEQQEHVDILIGSDGKRTLADRIEKALQG 115 Query: 147 KRVVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++ V+ + V FE L I + + AFL IQ+GC++FC++C++PY RG E S Sbjct: 116 EKQVNEIHDVRALRVFEALPIQHFEHQTR----AFLKIQDGCNQFCSYCIIPYARGAERS 171 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRL 263 +V+ A+ L +G EI L G + + G+ ++ + L+ + E+KGL R+ Sbjct: 172 LPEDEVIKIAQDLCASGHQEIVLSGIHTGRY-GRDIN---TNLTQLMKRMCKEVKGLRRI 227 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ ++SD L+ + +LH+P+QS ++ +LK+M+R + +++ + IR Sbjct: 228 RISSIEMNEISDELLTFMQKEPKIARHLHIPIQSANNEVLKNMHRPYDVEWFKERVKYIR 287 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S+ PDI+ISSD IVGFP E+++ F TM+ + ++ + F YS R T + M ++ Sbjct: 288 SLMPDISISSDVIVGFPQESEEQFVDTMENIKQMELSFLHIFPYSRRDHTVAATMSGHLE 347 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 +K ER L + + ++ VG+ + VL EK ++ G L G + Sbjct: 348 NKIKKERAARLAQCSKALYTAYKQKFVGKEVSVLFEK--EKDGMLFGHT 394 >gi|261496271|ref|ZP_05992676.1| 2-methylthioadenine synthetase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308102|gb|EEY09400.1| 2-methylthioadenine synthetase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 445 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 134/460 (29%), Positives = 217/460 (47%), Gaps = 50/460 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ + GY + S ++ADL+++NTC + A ++ +G Sbjct: 11 SLGCPKNLVDSERILTELRADGYNIIPSYENADLVIVNTCGFIDSAVQESLESIGEALEA 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 V+V GC+ E + I P V + GP +Y + + + Sbjct: 71 NGK---------VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAVMNHVHK-------- 112 Query: 151 DTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 Y + +F + + G A+L I EGCD CTFC++P RG SRS+ Sbjct: 113 ---YVPKPEFNPYTSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLASRSIV 169 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYS 253 QV+DEA++L+D GV E+ ++ Q+ +A W G + T + L S Sbjct: 170 QVLDEAKRLVDAGVKELLIVSQDTSAYSLDRKKEEETKTVFWNGMPIKSNLITLCEQLGS 229 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 + VRL Y +P + A G + +PYL +P+Q S +ILK+M R + Sbjct: 230 MGV---WVRLHYVYPYPHVDDLIPLMAAGKI---LPYLDIPLQHASPKILKAMKRPGSIE 283 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + I + R + P++ + S FIVGFPGET++DF+ +D + + + FK+SP G Sbjct: 284 RTLERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGA 343 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431 ++M +QV E VK ER + +E + A +G+ ++V+I+ +E G+ + Sbjct: 344 VATDMPDQVPEEVKEERFHRFMQLQQEISAARLQAKIGKTVQVIIDDIDEEGIIGRSMAD 403 Query: 432 SPWLQSVVL--NSKNH--NIGDIIKVRITDVKISTLYGEL 467 +P + VV N N +G II V IT L+G L Sbjct: 404 APEIDGVVYVDNPSNQLVTVGQIISVTITHADEYDLWGIL 443 >gi|56414051|ref|YP_151126.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|81360331|sp|Q5PGP7|RIMO_SALPA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|56128308|gb|AAV77814.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] Length = 441 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 236/462 (51%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ + + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V++++ +E G+ Sbjct: 343 GANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399 Query: 429 VGRSPWLQ-SVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + +P + +V LN + N +GDI++V++ + L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKLGDIVRVKVENADEYDLWGSRV 441 >gi|254361128|ref|ZP_04977272.1| 2-methylthioadenine synthetase [Mannheimia haemolytica PHL213] gi|153092619|gb|EDN73668.1| 2-methylthioadenine synthetase [Mannheimia haemolytica PHL213] Length = 445 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 134/460 (29%), Positives = 217/460 (47%), Gaps = 50/460 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ + GY + S ++ADL+++NTC + A ++ +G Sbjct: 11 SLGCPKNLVDSERILTELRADGYNIIPSYENADLVIVNTCGFIDSAVQESLESIGEALEA 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 V+V GC+ E + I P V + GP +Y + + + Sbjct: 71 NGK---------VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAVMNHVHK-------- 112 Query: 151 DTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 Y + +F + + G A+L I EGCD CTFC++P RG SRS+ Sbjct: 113 ---YVPKPEFNPYTSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLASRSIV 169 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYS 253 QV+DEA++L+D GV E+ ++ Q+ +A W G + T + L S Sbjct: 170 QVLDEAKRLVDAGVKELLIVSQDTSAYSLDRKKEEATKTVFWNGMPIKSNLITLCEQLGS 229 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 + VRL Y +P + A G + +PYL +P+Q S +ILK+M R + Sbjct: 230 MGV---WVRLHYVYPYPHVDDLIPLMAAGKI---LPYLDIPLQHASPKILKAMKRPGSIE 283 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + I + R + P++ + S FIVGFPGET++DF+ +D + + + FK+SP G Sbjct: 284 RTLERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGA 343 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431 ++M +QV E VK ER + +E + A +G+ ++V+I+ +E G+ + Sbjct: 344 VATDMPDQVPEEVKEERFHRFMQLQQEISAARLQAKIGKTVQVIIDDIDEEGIIGRSMAD 403 Query: 432 SPWLQSVVL--NSKNH--NIGDIIKVRITDVKISTLYGEL 467 +P + VV N N +G II V IT L+G L Sbjct: 404 APEIDGVVYVDNPSNQLVTVGQIISVTITHADEYDLWGIL 443 >gi|167854805|ref|ZP_02477583.1| hypothetical protein HPS_00775 [Haemophilus parasuis 29755] gi|167854103|gb|EDS25339.1| hypothetical protein HPS_00775 [Haemophilus parasuis 29755] Length = 443 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 142/464 (30%), Positives = 223/464 (48%), Gaps = 47/464 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P FV S GC N+ DS R+ S GY ++S + ADL+++NTC + A ++ Sbjct: 4 APNIGFV-SLGCPKNLVDSERILTELRSDGYNIISSYEGADLVIVNTCGFIDSAVQESLE 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G V+V GC+ E + I P V + GP +Y + Sbjct: 63 SIGEALEANGK---------VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV-----M 107 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 K V +Y+ +S+V G A+L I EGCD CTFC++P RG Sbjct: 108 KHVHKYVPKPEYN-----PYVSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRGD 162 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSD---------- 249 SR + QV+DEA++L+D+GV E+ ++ Q+ +A+ K +G K F + Sbjct: 163 LDSRPIVQVLDEAKRLVDSGVKELLIVSQDTSAYALDKKKEEGTKTVFWNGMPIKNNLIA 222 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 L L + VRL Y +P + A G L +PYL +P+Q S +ILK+M R Sbjct: 223 LCEQLGSMGVWVRLHYVYPYPHVDDLIPLMAQGKL---LPYLDIPLQHASPKILKAMKRP 279 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + + I + R + PD+ + S FIVGFPGET++DF+ +D + + + FK+SP Sbjct: 280 GSIDRTLERIKKWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKFSP 339 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEK-- 425 G + M +QV E VK ER + +QQ+S + +G+ + V++++ KE Sbjct: 340 VDGAVATEMEDQVPEEVKEERFHRFMQ--LQQQISADRLQQKIGRTLSVIVDEIDKEGII 397 Query: 426 GKLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 G+ + +P + VV L+ +G II V IT L+G Sbjct: 398 GRSMADAPEIDGVVYVDNLSGAEVKVGQIISVTITQADEYDLWG 441 >gi|146297144|ref|YP_001180915.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor saccharolyticus DSM 8903] gi|238065313|sp|A4XLD9|RIMO_CALS8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|145410720|gb|ABP67724.1| SSU ribosomal protein S12P methylthiotransferase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 440 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 132/454 (29%), Positives = 231/454 (50%), Gaps = 37/454 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M G+E + +DAD+IV+NTC A ++ + + Sbjct: 8 SLGCNKNLVDSEIMMGACKEAGFEITPNAEDADVIVINTCGFINDAKQESIDTILEMAEY 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--- 147 KN + K ++V GC++Q ++IL+ P V+ ++G + +LP ++++ G+ Sbjct: 68 KNKKCK-----FLIVTGCLSQRYKDDILKELPEVDAILGVKEMLKLPNVIKKLYEGESKL 122 Query: 148 RVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +V D + RL Y A++ I EGC+ C++C +P RG SR Sbjct: 123 QVFDDKPTFVYTSSMPRLIATPKFY-------AYIKIAEGCNNRCSYCSIPLIRGNYTSR 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 + ++ EARKL ++G EI L Q+ + G+D +K + LL LSEI + +R Sbjct: 176 YIDDIIQEARKLSEDGYKEIVLTAQDTTKY---GIDIYQKKMLATLLQKLSEIDNIKWIR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + S+P D+ D L+ L ++ Y +P+Q ++RILK MNR+ ++ +++I RIRS Sbjct: 233 FLYSYPEDIDDELLNIVKSLPKVVKYFDIPIQHINNRILKLMNRKTSSEGIKELIQRIRS 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 ++ I + +VGFP E++D+F + V + + +F YS GTP ++ L Q D+ Sbjct: 293 AFDEVVIRTTVMVGFPTESEDEFEELYEFVKWAKFDRLGAFMYSQEEGTPAAD-LPQTDD 351 Query: 385 NVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQS--- 437 K ER+L LQ+K+ ++ N + + EV+IE G+++ + RS + Sbjct: 352 ETKVKRYERILNLQRKISLER---NRKRISKKYEVVIE--GRDRNNFYIARSQFEAPEVD 406 Query: 438 ---VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V + + G+ + V+I D L GE++ Sbjct: 407 GKIIVFSKRKLLPGEFVVVKILDAFEYDLVGEVI 440 >gi|50121632|ref|YP_050799.1| ribosomal protein S12 methylthiotransferase [Pectobacterium atrosepticum SCRI1043] gi|81644718|sp|Q6D3N6|RIMO_ERWCT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|49612158|emb|CAG75608.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 442 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 137/463 (29%), Positives = 230/463 (49%), Gaps = 47/463 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDA+L+++NTC + A ++ Sbjct: 9 PRIGFV-SLGCPKNLVDSERILTELRTEGYQVVPRYDDAELVIVNTCGFIDSAVQESLEA 67 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E + I P V + GP +Y ++ L Sbjct: 68 IGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQV--LSHVH 115 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 ++ + ++ + + + Y A+L I EGC+ CTFC++P RG Sbjct: 116 QYVPKPTHNPFTSLVPEQGVKLTPRHY-------AYLKISEGCNHRCTFCIIPSMRGDLD 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V+DEA++L++ GV E+ ++ Q+ +A W G+ + K + L Sbjct: 169 SRPIGSVLDEAKRLVNAGVKELLVISQDTSAYGADVKQRTGFWNGQPV---KTSMVSLCE 225 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L+ + VRL Y +P + A G + +PYL +P+Q S +ILK M R Sbjct: 226 QLASLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPKILKLMKRPGAV 282 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I R R + PD+ + S FIVGFPGET++DF+ +D + + + FK+SP G Sbjct: 283 ERTLERIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAKLDRVGCFKFSPVEG 342 Query: 373 TPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427 + + +QV E VK E R + LQ+ + Q++ +G+ + VLI++ +E G+ Sbjct: 343 AAANELPDQVPEEVKEERFHRFMQLQQAISTQRLQDK---IGREVLVLIDEIDEEGAIGR 399 Query: 428 LVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + +P + +V LN + +GDI+KV++ L+G V Sbjct: 400 SMADAPEIDGAVYLNGETGVKVGDIVKVKVEHADEYDLWGSRV 442 >gi|74311379|ref|YP_309798.1| ribosomal protein S12 methylthiotransferase [Shigella sonnei Ss046] gi|110804833|ref|YP_688353.1| ribosomal protein S12 methylthiotransferase [Shigella flexneri 5 str. 8401] gi|123048317|sp|Q0T6C8|RIMO_SHIF8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|123773546|sp|Q3Z3U9|RIMO_SHISS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|73854856|gb|AAZ87563.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|110614381|gb|ABF03048.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|323165766|gb|EFZ51552.1| RNA modification enzyme, MiaB family protein [Shigella sonnei 53G] Length = 441 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFP ET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPSETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ +E G+ Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441 >gi|191166154|ref|ZP_03027988.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B7A] gi|190903763|gb|EDV63478.1| MiaB-like tRNA modifying enzyme YliG [Escherichia coli B7A] Length = 441 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ +E G+ Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ DI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPSDILRVKVEHADEYDLWGSRV 441 >gi|310779510|ref|YP_003967843.1| MiaB-like tRNA modifying enzyme [Ilyobacter polytropus DSM 2926] gi|309748833|gb|ADO83495.1| MiaB-like tRNA modifying enzyme [Ilyobacter polytropus DSM 2926] Length = 437 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 119/403 (29%), Positives = 210/403 (52%), Gaps = 23/403 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ ++ GY+ VN D AD+ ++N+C + A K + L R + Sbjct: 11 TLGCKVNQYETESIKKQLSDLGYDEVNFDDKADVYIVNSCTVTTIADRKTRNMLRRAK-- 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 K D LV+ GC AQ ++ L ++ V+G + L+ E + + Sbjct: 69 -----KNNPDSLVIATGCYAQTNAKD-LEGIKEIDYVIGNSDKSGIINLINNIESEKTSE 122 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 RV+ + ++E L ++ R ++ A++ IQ+GC+ FC++C +P+ RG SR Sbjct: 123 RVIHRNIFDAKEYEELE-----FSTLREMSRAYIKIQDGCNNFCSYCKIPFARGKSRSRK 177 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265 L ++ EA L G EI ++G N+ + G D E F LL +S++ G+ R+R Sbjct: 178 LKSILKEAVILAKEGFKEIIIIGINLGVY---GEDIPENGDFETLLDEISKVDGIERIRI 234 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 + +P +SD I+ + LMP+LH+ +QS D ILK+MNR + + ++ + ++++ Sbjct: 235 GSMYPDKISDRFIELMKNNSKLMPHLHISLQSCDDEILKAMNRNYDSQLIKERLLKLKNT 294 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 +I ++D IVGFPGE + +F T+ ++ ++G++ F+YS R T S + E+VD Sbjct: 295 VENIEYTADVIVGFPGENEKNFENTVSVIKEVGFSDLHIFQYSDRENTAASRLPEKVDSK 354 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKG 426 K R L+ Q + VG+ +EVL+E K+G G Sbjct: 355 TKKSRAEKLENLKVNMQKLLGERYVGKTMEVLVEETKNGNTYG 397 >gi|212711339|ref|ZP_03319467.1| hypothetical protein PROVALCAL_02411 [Providencia alcalifaciens DSM 30120] gi|212686068|gb|EEB45596.1| hypothetical protein PROVALCAL_02411 [Providencia alcalifaciens DSM 30120] Length = 444 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 139/466 (29%), Positives = 232/466 (49%), Gaps = 51/466 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP+ FV S GC N+ DS R+ + GY+ V S DDADL+++NTC + A ++ Sbjct: 8 VPKIGFV-SLGCPKNLVDSERILTELRTDGYQVVPSYDDADLVIVNTCGFIDSAVQESLE 66 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N E G V+V GC+ E + I P V + GP +Y ++ + Sbjct: 67 AIGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQVLNHVHH 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 D F L + + G A+L I EGC+ CTFC++P RG Sbjct: 117 Y--------VPKPEHDPFFSL-VPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDL 167 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 SR++ V++EA++L+++GV E+ ++ Q+ +A W GK + K + L Sbjct: 168 DSRAIGDVLNEAKRLVESGVKELLVISQDTSAYGVDVKHRMGFWDGKPV---KTSMVGLC 224 Query: 252 YSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 L+ + VRL Y +P D+ +++ ++PYL +P+Q S +ILK M R Sbjct: 225 EQLASMGVWVRLHYVYPYPHVDDVIPLMVEGK-----VLPYLDIPLQHASPKILKLMKRP 279 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + I R R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP Sbjct: 280 GAVERTLERIKRWREMCPELTLRSTFIVGFPGETEEDFQMLLDFLQEARLDRVGCFKYSP 339 Query: 370 RLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK- 425 G + + +QV E+VK E R + LQ+++ Q++ VG+ + V++++ E Sbjct: 340 VEGAKANELADQVPEDVKEERYHRFMQLQQEISTQRLQEK---VGRELWVIVDEVDDEGA 396 Query: 426 -GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 G+ + +P + +V + ++ GDI+KV I L+G +V Sbjct: 397 VGRSMADAPEIDGMVYLNGEFDVKAGDIVKVLIEHADEYDLWGTVV 442 >gi|229828421|ref|ZP_04454490.1| hypothetical protein GCWU000342_00482 [Shuttleworthia satelles DSM 14600] gi|229793015|gb|EEP29129.1| hypothetical protein GCWU000342_00482 [Shuttleworthia satelles DSM 14600] Length = 450 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 119/411 (28%), Positives = 211/411 (51%), Gaps = 34/411 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + + GC++N Y++ M+ M + GY+ V D AD+ ++NTC + A K + Sbjct: 2 RRAALHNLGCKVNSYETEAMQQMLEAAGYQIVPFQDQADVYIINTCSVTNMADAKSRQMI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 R R ++ D +VV GC Q E EE L +++++G +L ++ Sbjct: 62 HRAR-------RKNPDAIVVATGCYVQTSAGEAEEDLS----IDIIIGNNRKTQLVRAID 110 Query: 142 RARFGKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 R R V + S + +ERL + + + AF+ +Q+GC++FC++C++P R Sbjct: 111 EFRRDHRRVKELAEDSRQPDYERLQLTRTAEHTR----AFIKVQDGCNQFCSYCIIPLAR 166 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--------FSDLL 251 G SRS V+ E R L +G E+ L G +++++ + + + +L+ Sbjct: 167 GRIRSRSPKDVLKEVRGLAASGYQEVVLNGIHLSSYGMTSYNRQVASEEMAGGGHLMELV 226 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +++ ++G+ R+R + PR + + ++ + P+ HL +QSG D LK MNRR+T Sbjct: 227 EAVAGVEGIRRIRLGSMEPRLVDRAFAERLARVEKICPHFHLSLQSGCDETLKRMNRRYT 286 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 ++RQ + +R AI++D IVGFP ET+++F A+ +++I + + FKYS R Sbjct: 287 TQDFRQAVALLRENFAHPAITTDVIVGFPQETEEEFEASRHFLEEIRFYEMHIFKYSRRR 346 Query: 372 GTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE 419 GT M Q+DE K+ R LL L ++ F +G+ EVL+E Sbjct: 347 GTLADTMPGQLDEETKSRRSHVLLALADRM---SAEFRRQEIGREAEVLME 394 >gi|291087073|ref|ZP_06345323.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. M62/1] gi|291076389|gb|EFE13753.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium sp. M62/1] Length = 452 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 141/444 (31%), Positives = 230/444 (51%), Gaps = 37/444 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+ M GYE V + AD+ V+NTC + A +K L R + + Sbjct: 19 GCKVNAYETEAMQQMLEDAGYEIVPFREGADVYVINTCSVTNVADKKSRQMLHRAKKMNP 78 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD- 151 S + VV AGC QA GEE L++ V++V+G L E+LER D Sbjct: 79 SAV-------VVAAGCYVQAAGEE-LKKDEAVDLVIGNNRKKDLVEVLERYFNEHEGTDD 130 Query: 152 -TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D ++E+L I + + AF+ +Q+GC++FC++C++PYTRG SRS+ V Sbjct: 131 IIDIGKTSEYEKLHIRKIADHTR----AFIKVQDGCNQFCSYCIIPYTRGRVRSRSMEDV 186 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--------FSDLLYSLSEIKGLVR 262 V E L +G EI L G +++++ G D ++ L+ L I G+ R Sbjct: 187 VQEVEALAASGYKEIVLTGIHLSSY---GADFKRTAENPEAAADLLSLIVRLDRIPGIER 243 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R + PR ++D + L P+ HL +QSG + LK MNR +T +Y + + Sbjct: 244 IRLGSLEPRIITDEFAETLAGLKSFCPHFHLSLQSGCNETLKRMNRHYTTEDYEARCEIL 303 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + AI++D IVGFP ET+++F T + +I + + FKYS R GT + M QV Sbjct: 304 RRYFHNPAITTDVIVGFPQETEEEFEETRQFLKRIHFYEMHIFKYSRREGTRAAVMEGQV 363 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRS-PWLQ 436 E KAER LL L++++ + + +G+ EVL+E+ G+ +VG + +++ Sbjct: 364 PEPKKAERSDILLALEEQM---SLEYRRTFLGKEEEVLLEERISVDGEDYMVGHTRQYVK 420 Query: 437 SVVLNS---KNHNIGDIIKVRITD 457 +VV KN + +++ +TD Sbjct: 421 AVVPYREGLKNVTVRGVMERMVTD 444 >gi|260459455|ref|ZP_05807710.1| MiaB-like tRNA modifying enzyme YliG [Mesorhizobium opportunistum WSM2075] gi|259035009|gb|EEW36265.1| MiaB-like tRNA modifying enzyme YliG [Mesorhizobium opportunistum WSM2075] Length = 437 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 225/465 (48%), Gaps = 49/465 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE D ADL+V+NTC + A ++ + Sbjct: 3 APRVSFV-SLGCPKALVDSERIITRLRAEGYEIARKHDGADLVVVNTCGFLDSARDESLN 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G S + E G V+V GC+ AE + I + P V + GPQ Y + + Sbjct: 62 AIG-------SALSENGR--VIVTGCLG-AEPDVIREKHPNVLAITGPQAYESVMAAVHE 111 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D + L G R A+L I EGC+ CTFC++P RG Sbjct: 112 AA---------PPSHDPYIDLLPPQGVKLTPRHY-AYLKISEGCNNRCTFCIIPALRGDL 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251 +SR + V+ EA KL GV E+ ++ Q+ +A+ G+D + + F DL Sbjct: 162 VSRPAADVLREAEKLAKAGVKELLVISQDTSAY---GIDIKYQTSLFGDREVRAKFLDLS 218 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L ++ VR+ Y +P + A G + +PYL +P Q S ++LK+M R Sbjct: 219 QELGKLGIWVRMHYVYPYPHVADVIPLMAEGKI---LPYLDIPFQHASPQVLKNMRRPAH 275 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + + I R V PD+AI S FIVGFPGETDDDF +D +D+ +A FKY P Sbjct: 276 GEKTLERIRGWRDVCPDLAIRSTFIVGFPGETDDDFEMLLDWLDEAKIDRAGCFKYEPVR 335 Query: 372 GTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE-K 425 G +++ LEQV + +K R + Q+K+ Q++ VG+ + VLI E HG K Sbjct: 336 GARSNDLGLEQVPQEIKEARWHRFMQRQQKISATQLAKK---VGKRLPVLIDEAHGTSAK 392 Query: 426 GKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 G+ +P + SV + S+ GDI+ V+I LYG V Sbjct: 393 GRTKYDAPEIDGSVHIQSRRPLRAGDIVTVKIDRADAYDLYGSAV 437 >gi|300775750|ref|ZP_07085611.1| 2-methylthioadenine synthetase [Chryseobacterium gleum ATCC 35910] gi|300505777|gb|EFK36914.1| 2-methylthioadenine synthetase [Chryseobacterium gleum ATCC 35910] Length = 448 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 123/411 (29%), Positives = 209/411 (50%), Gaps = 32/411 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + GYE+V+ + A++ V+NTC + E A + + R Sbjct: 12 TLGCKLNFAETSTIARQLTDAGYEKVSFDEKANVYVINTCSVTENADRECKLHVKRA--- 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--- 147 +K + LVV+ GC AQ + EEI + V++V+G + + + L+ + Sbjct: 69 ----MKANPEGLVVIVGCYAQLKPEEISQIEG-VDLVLGAKEKFNILSYLDDLEKSENEG 123 Query: 148 -----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + +TD+ + G Y+ AFL +Q+GCD CT+C +P RGI Sbjct: 124 IVHSCEIEETDFFI-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGIS 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKG 259 S ++ V+ A ++ + EI L G N+ + GKG G K TF DL+ L +++G Sbjct: 173 RSDTIENVLRNATEIAAKDIKEIVLTGVNIGDY-GKGEFGNKRHEHTFLDLISELDKVEG 231 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R ++ P + D I+ +P+ H+P+QSGSD +LK M RR+ Y + Sbjct: 232 IERIRISSIEPNLLKDESIELVSKSRSFVPHFHIPLQSGSDDLLKKMKRRYLTKLYNDRV 291 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++IR V PD AI D IVGFPGET++ F T + ++++ F YS R T ++M Sbjct: 292 NKIREVMPDAAIGVDVIVGFPGETEERFMETYNFLNELPITYLHVFTYSERENTEAASMD 351 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 E V + +R L+ +++++F +G+ + VL E H + GK+ G Sbjct: 352 EVVPVTERKKRNKMLRILSEKKKMAFYQTQLGKTLPVLWE-HENKDGKMFG 401 >gi|296445462|ref|ZP_06887419.1| MiaB-like tRNA modifying enzyme YliG [Methylosinus trichosporium OB3b] gi|296257028|gb|EFH04098.1| MiaB-like tRNA modifying enzyme YliG [Methylosinus trichosporium OB3b] Length = 452 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 135/453 (29%), Positives = 216/453 (47%), Gaps = 42/453 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GYE + AD++V+NTC + A + +G Sbjct: 21 SLGCPKALVDSERILTRLRAEGYELSRTHAGADVVVVNTCGFLDSAKAESLEAIG----- 75 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + +KE G VVV GC+ AE + I R P V + GPQ Y + E + A +R Sbjct: 76 --AALKENGK--VVVTGCMG-AEPQAITDRFPQVTAITGPQAYESVVEAVHAAAPPRR-- 128 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L + + G A+L I EGCD C+FC++P+ RG SR ++V Sbjct: 129 -------DPFLDL-VPEQGVKLTPRHYAYLKISEGCDNSCSFCIIPHLRGPLASRPAAEV 180 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---------LLYSLSEIKGLV 261 + EA KL+ GV E+ ++ Q+ +A+ G+ L + F D L L + V Sbjct: 181 LREAEKLVKAGVKELLVISQDTSAY-GRDLRYAESAFGDRAVRARFLDLSRELGSLGAWV 239 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RL Y +P + A G + +PYL +P Q + +LK+M R + + I Sbjct: 240 RLHYVYPYPHVDEVVALMAEGKV---LPYLDIPFQHAAPSVLKTMKRPANEEKTLERIKA 296 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LE 380 R + PD+ + S FIVGFPGET+ DF +D +D+ +A +F+Y P G P +++ LE Sbjct: 297 WRRICPDLTLRSTFIVGFPGETEADFCYLLDWLDEAEIDRAGAFRYEPVAGAPANDLPLE 356 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK------EKGKLVGRSPW 434 V + VK R ++ ++ +G+ ++VLI++ G KG+ +P Sbjct: 357 AVPDEVKETRWKRFMERQQKVSARLLKRKIGKRLQVLIDEPGGGASGALAKGRSKADAPQ 416 Query: 435 LQSV--VLNSKNHNIGDIIKVRITDVKISTLYG 465 + V + + GDI+ V+I L+G Sbjct: 417 IDGAVNVASRRPLRAGDIVTVKIERADAYDLHG 449 >gi|258404436|ref|YP_003197178.1| RNA modification enzyme, MiaB family [Desulfohalobium retbaense DSM 5692] gi|257796663|gb|ACV67600.1| RNA modification enzyme, MiaB family [Desulfohalobium retbaense DSM 5692] Length = 431 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 122/415 (29%), Positives = 199/415 (47%), Gaps = 47/415 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF + + GC++N Y+S + + + +GY ++ + + IV+N+C + A + Sbjct: 5 RFALHTLGCKVNQYESQALREAWLQRGYREASTDEVPEWIVVNSCAVTSGAVQDT----- 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE------ILRRSP---IVNVVVGPQTYYRL 136 R L + + +VV GC AQ EE +LR P ++ VGP + Sbjct: 60 --RKLVRKLHRNHPEAAIVVTGCAAQVFTEEMAALPGVLRTVPQQAKADLCVGPDALH-- 115 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 F R D F + +R RG+ L +Q+GC CT+C+VP Sbjct: 116 --------FACREAD-------HFPEFPVT--ASSRARGL---LKVQDGCSHGCTYCIVP 155 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-- 254 +TRG ++RS + + EAR L G+ E+++ G N+ + G+ L F D L L Sbjct: 156 HTRGPAVTRSPEKSLAEARHLFRGGLRELSVSGINLRQY-GRDLT-PPLDFWDFLAWLDA 213 Query: 255 ---SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +E G RLR ++ P +++D + ++ P+LHL +QSGS IL+ M R H Sbjct: 214 NLATEWAGRARLRLSSLEPSELTDKALDTLRRCRLVAPHLHLSLQSGSPEILRRMGRGHY 273 Query: 312 AYEY-RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + R +DR++ + P + +DF++GFPGE D F T LV + + F YSPR Sbjct: 274 HPDTIRTFVDRLQEIWPHFGLGADFLLGFPGEDDAAFETTAALVRDLPFTYGHVFPYSPR 333 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF-NDACVGQIIEVLIEKHGKE 424 GTP + +QV E +K ER L+ L +++ +F I ++EKH + Sbjct: 334 PGTPAATFTDQVAEPIKRERCAILRSILEDKRTAFLQQQAQRDHIPFIVEKHPAQ 388 >gi|167550447|ref|ZP_02344204.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|204929807|ref|ZP_03220828.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320801|gb|EDZ06002.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205324564|gb|EDZ12403.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|322616326|gb|EFY13235.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619576|gb|EFY16451.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622728|gb|EFY19573.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628640|gb|EFY25427.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631577|gb|EFY28333.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637104|gb|EFY33807.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641696|gb|EFY38332.1| hypothetical protein SEEM954_16890 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644510|gb|EFY41050.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648443|gb|EFY44895.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654178|gb|EFY50501.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658093|gb|EFY54360.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663567|gb|EFY59769.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670303|gb|EFY66443.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671539|gb|EFY67661.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676895|gb|EFY72962.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682820|gb|EFY78839.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686499|gb|EFY82481.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194604|gb|EFZ79797.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196806|gb|EFZ81950.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204818|gb|EFZ89813.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208954|gb|EFZ93891.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213939|gb|EFZ98709.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215209|gb|EFZ99954.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222435|gb|EGA06811.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227535|gb|EGA11695.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229887|gb|EGA14010.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233112|gb|EGA17208.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240847|gb|EGA24889.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243164|gb|EGA27184.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248705|gb|EGA32633.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251707|gb|EGA35574.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257521|gb|EGA41209.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261478|gb|EGA45059.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267909|gb|EGA51388.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272024|gb|EGA55439.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 441 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 234/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ + + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 +++ +QV E VK E R + LQ+++ +++ VG+ I V++++ +E G+ Sbjct: 343 GANDLPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ + L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441 >gi|291534092|emb|CBL07205.1| 2-methylthioadenine synthetase [Megamonas hypermegale ART12/1] Length = 278 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/257 (38%), Positives = 151/257 (58%), Gaps = 18/257 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + + YGCQMN D R GY+ ++DAD+I++NTC +RE A +K+Y +G Sbjct: 12 YKILPYGCQMNFSDGERFAGQLERMGYKPAEKLEDADIIIINTCCVRESAEKKIYGKIGE 71 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--AR 144 I++LK + DL++ + GC+AQ +G+ I +++ V+ V+G Y LP +LE A Sbjct: 72 IKHLKQQK----PDLILGITGCMAQKDGDAIFKKASHVDFVLGTNKMYDLPAVLEEIFAS 127 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G V + DY + E + AF+ I GC+ FCT+C+VPY RG E Sbjct: 128 RGHIVKLAGDYDMPPNVEPA--------ENNSLFAFIPIMYGCNNFCTYCIVPYVRGRER 179 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR+ ++V E KL NGV E+TLLGQNVN++ G D + F+DLL + +I+G+ R+ Sbjct: 180 SRAPQEIVAEITKLAQNGVKEVTLLGQNVNSY---GKDRDDADFADLLAMVDKIEGIERI 236 Query: 264 RYTTSHPRDMSDCLIKA 280 RY TSHPRD++D +I+ Sbjct: 237 RYMTSHPRDLTDKVIET 253 >gi|295109889|emb|CBL23842.1| SSU ribosomal protein S12P methylthiotransferase [Ruminococcus obeum A2-162] Length = 445 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 142/453 (31%), Positives = 223/453 (49%), Gaps = 34/453 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + + G+E V+S ++AD IV+NTC A E+ + + + Sbjct: 7 SLGCDKNLADSEEMLGLLTANGHEIVDSEEEADAIVINTCCFIHDAKEESVNTILEMAEY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---K 147 K S G ++V GC+AQ EEI + P V+ V+G +Y + + L + G + Sbjct: 67 KKS----GTCKALIVTGCMAQRYKEEITQEIPEVDAVLGTTSYGDIVKALNEVQAGNVFQ 122 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D + ED R+ I GG+ +L I EGCDK CT+C++P RG S Sbjct: 123 EFRDINELPEDCGHRV-ITTGGH------FGYLKIAEGCDKHCTYCIIPSLRGKFRSVPE 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +++ +A + GV E+ L+ Q + G L G+K T LL L +I+G+ +R Sbjct: 176 ERLLKQAEYMASQGVRELILVAQETTVY-GTDLYGKK-TLHLLLKKLCQIRGIRWIRVLY 233 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P ++ D LI+ + YL LP+Q SD+IL+ M RR + + II ++R P Sbjct: 234 CYPEEIYDELIQVMKAEPKICHYLDLPIQHASDKILRRMGRRTSKQQLIDIITKLRREIP 293 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 DI + + I GFPGET++D + M+ VD++ + + F YSP GTP M QV E VK Sbjct: 294 DIVLRTSLITGFPGETEEDHQELMEFVDEMEFDRLGVFTYSPEEGTPAETMEGQVPEEVK 353 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN- 446 R + + +E + + +GQ + V+IE GK++G S ++ ++ + Sbjct: 354 EARRDEIMELQQEISLDKGNDRIGQEVLVMIE------GKVLGESAYIGRTYGDAPKVDG 407 Query: 447 -----------IGDIIKVRITDVKISTLYGELV 468 GD KV +T L GEL Sbjct: 408 YIFVQTGELLVTGDFAKVTVTGALEYDLIGELT 440 >gi|333009569|gb|EGK29021.1| RNA modification enzyme, MiaB family protein [Shigella flexneri K-272] gi|333020497|gb|EGK39760.1| RNA modification enzyme, MiaB family protein [Shigella flexneri K-227] Length = 441 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ V + I V+I++ +E G+ Sbjct: 343 DANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VDREILVIIDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV 441 >gi|311109259|ref|YP_003982112.1| RNA modification enzyme, MiaB family protein [Achromobacter xylosoxidans A8] gi|310763948|gb|ADP19397.1| RNA modification enzyme, MiaB family protein [Achromobacter xylosoxidans A8] Length = 477 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 147/471 (31%), Positives = 230/471 (48%), Gaps = 60/471 (12%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE DDAD++V+NTC + A + Sbjct: 42 TPRVGFV-SLGCPKALVDSERILTQLRTEGYEVTPEYDDADVVVVNTCGFIDSAKAESLE 100 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLE 141 +G + E G V+V GC+ E ++R P V V GPQ Y + + Sbjct: 101 AIGEA-------LAENGK--VIVTGCMGVEES--VIRDVHPSVLAVTGPQQYEEVVRAVH 149 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 A K+ D L +V G A+L I EGC+ C+FC++P RG Sbjct: 150 EAAPPKK---------DHNPYLDLVPPQGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRG 200 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSD 249 +SR + V+ EA +L+ GV E+ ++ Q+ +A W G+ + K ++ Sbjct: 201 NLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDVKYRSGFWNGRPV---KTRMTE 257 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 L +LSE+ RL Y +P + A G + +PYL +P Q S RILK+M R Sbjct: 258 LCMALSEMGVWTRLHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPRILKAMKR- 313 Query: 310 HTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 A+E + + I R R + PD+ I S FIVGFPGET++DF+ +D + + + F+Y Sbjct: 314 -PAFEDKTLARIKRWREICPDLTIRSTFIVGFPGETEEDFQYLLDWMQEAQLDRVGCFQY 372 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGK 423 SP G P + + V ++VK ER ++ E Q S + A VG+ I+VLI++ + Sbjct: 373 SPVEGAPANLLDNPVPDDVKQERW----ERFMELQQSISTARLAKKVGREIDVLIDEVDE 428 Query: 424 EKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + VGRS P + V S + + GD+++VR+TD L+ + + Sbjct: 429 DGA--VGRSSADAPEIDGCVYVSSDKPLKAGDLVRVRVTDSDEYDLWADAI 477 >gi|156934668|ref|YP_001438584.1| ribosomal protein S12 methylthiotransferase [Cronobacter sakazakii ATCC BAA-894] gi|238065354|sp|A7MF19|RIMO_ENTS8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|156532922|gb|ABU77748.1| hypothetical protein ESA_02503 [Cronobacter sakazakii ATCC BAA-894] Length = 441 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 140/465 (30%), Positives = 234/465 (50%), Gaps = 51/465 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ + + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 SR + V+ EA++L++ GV E+ ++ Q+ +A W G + K + L Sbjct: 166 LDSRPIGDVLAEAKRLVEAGVKELLVISQDTSAYGVDVKHRTGFWNGSPV---KTSMVSL 222 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L+++ VRL Y +P + A G + +PYL +P+Q S RILK M R Sbjct: 223 CEQLAKLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPG 279 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + I + R + P++ + S FIVGFPGET+DDF+ +D + + + FKYSP Sbjct: 280 SVDRQLARIKQWREICPELTLRSTFIVGFPGETEDDFQMLLDFLKEARLDRVGCFKYSPV 339 Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425 G +++ +QV E VK E R + LQ+++ +++ VG+ I V+I++ +E Sbjct: 340 EGATANDLPDQVPEEVKEERWNRFMALQQQISAERLQEK---VGREILVIIDEVDEEGAI 396 Query: 426 GKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 G+ + +P + +V LN + GD+++V++ + L+G LV Sbjct: 397 GRSMADAPEIDGAVYLNGETKLKPGDVVRVKVENADEYDLWGSLV 441 >gi|238913831|ref|ZP_04657668.1| hypothetical protein SentesTe_22240 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 441 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ + + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V++++ +E G+ Sbjct: 343 GANELPDQVPEEVKVERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ + L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441 >gi|332655310|ref|ZP_08421050.1| 2-methylthioadenine synthetase [Ruminococcaceae bacterium D16] gi|332515815|gb|EGJ45425.1| 2-methylthioadenine synthetase [Ruminococcaceae bacterium D16] Length = 451 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 136/465 (29%), Positives = 237/465 (50%), Gaps = 44/465 (9%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 ++P + S GC N+ ++ +M + G+ + AD+ VLNTC E A + Sbjct: 10 MMPYKIAFVSLGCAKNLVNTEQMMALCRKAGHTVTGEPEGADVAVLNTCGFIESAKSEA- 68 Query: 82 SFLGRIRN-LKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 I N L+ +++K+ G L ++VAGC+ Q ++I + P V+ ++G +Y + Sbjct: 69 -----IENILELAQLKQDGKLKKLLVAGCLTQRYPDDIRKELPEVDGMLGTGSYTDVVTA 123 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV------TAFLTIQEGCDKFCTFC 193 +E G+R + FER +D Y+ + TA+L I EGC C FC Sbjct: 124 VEELMAGER--------PEHFER---IDRAYDDGERMVTTPPYTAYLKIAEGCSNGCAFC 172 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 ++P RG SR++ +++EA+ L D+GV E+ ++ Q++ + G L G+ T + LL Sbjct: 173 IIPKLRGRYRSRTMDHLLEEAKSLADSGVKELIVIAQDITRY-GSDL-GDGTTLAGLLKE 230 Query: 254 LSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L ++ +RL Y +P ++D L++ ++ YL +P+Q +D ILK+M RR+T Sbjct: 231 LCKLPFHWIRLHYL--YPEAITDELVEVIASEKKIVHYLDIPIQHCNDGILKAMRRRNTK 288 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 E ++ R+R PD+ I + I G PGE + +F + + + +A F++SP G Sbjct: 289 VELEELFARLRKAIPDVVIRTSLICGLPGEGEAEFEELCEFLKEQKLQRAGVFQFSPEEG 348 Query: 373 TPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 T M QVD +V A R ++ LQ ++ ++ +N+ +G ++EVL E + G V Sbjct: 349 TLAEKMENQVDPDVAARRVELVVDLQSRIMDE---YNEERLGTVMEVLCEGFDSQAGCFV 405 Query: 430 GRSPWLQSVVLNSKNH-------NIGDIIKVRITDVKISTLYGEL 467 GR+ + SV ++ + G+ + VRIT V L GE+ Sbjct: 406 GRT-YADSVEIDGHVYFTAAGLVPAGEFVHVRITGVSDGDLTGEI 449 >gi|297527331|ref|YP_003669355.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus DSM 12710] gi|297256247|gb|ADI32456.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus DSM 12710] Length = 429 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 134/456 (29%), Positives = 242/456 (53%), Gaps = 39/456 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + +R ++++YGC +N D M+ + S+G+ VN + +AD I++NTC +R K+ Sbjct: 1 MARRVYIETYGCALNRGDEYIMKTVLVSRGHRLVNEIAEADTIIINTCTVRYDTELKM-- 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + RI+ L +I + ++VAGC+A+A+ +I + +P ++V PQ ++ Sbjct: 59 -IKRIKEL--YKIASEQNKKLIVAGCMAKAQPYKIHKIAPRASLV-SPQNASKI------ 108 Query: 143 ARFGKRVVDTDYSV-EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 V++D V K ER + G + K+ A+L IQEGC C+FC+V R Sbjct: 109 ----WIAVESDKQVFLLKGERDRNILGTHVDKQ--IAYLPIQEGCLGNCSFCIVKNARRQ 162 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 +S ++++ + +L+ GV EI L GQ+ ++ G L G K LL L IKG Sbjct: 163 LVSYPINKIKNTVEELVGKGVVEIELTGQDTASY-GLDLYG-KQKLPHLLEELDRIKGNF 220 Query: 262 RLRYTTSHPRDMSDCL--------IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 +R +P +++ L AH + +LH+P+QSGSD++L+ M R++T Sbjct: 221 MIRIGMMNPDTLANILDELVEIIKYSAH-----IYRFLHIPLQSGSDKVLRVMKRKYTVD 275 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 EYR+II +R P+I+I++D IVG PGE ++DF T+ ++ ++ + + YS R T Sbjct: 276 EYREIIKTLRKKIPEISIATDIIVGHPGEEEEDFEQTLSIIKELKFERIHPAVYSIRPNT 335 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432 ++ L QV + K R+L L K + + + + +G+I++ + ++ +GR+ Sbjct: 336 YSAS-LRQVPTSDKKIRMLRLLKIIEDVGLEIHRKYLGKILDTFVTEYS---NTWIGRTL 391 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ ++ ++ N GD +K +IT+ L G +V Sbjct: 392 NYIPVIIFSNNTLNFGDHVKTQITNATFYDLRGVIV 427 >gi|228472998|ref|ZP_04057755.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] gi|228275580|gb|EEK14357.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] Length = 438 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 124/435 (28%), Positives = 218/435 (50%), Gaps = 34/435 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + GC++N ++ + F ++G+++V+ + AD+ V+NTC + E A ++ Sbjct: 3 KRVAFYTLGCKLNFAETATIARSFENEGFDKVDFEEPADIYVINTCSVTENADKQ----- 57 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143 R + +K + + GC AQ + E+++ V++V+G + + + + ++ Sbjct: 58 --FRQIVRKALKHNENAFIAAVGCYAQLKPEDLIAVDG-VDLVLGAKEKFNITQYIDDLT 114 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K ++ D + D + G Y+ AFL IQ+GCD CT+C +P RGI Sbjct: 115 KLNKGQIHSCDINEADFYV------GSYSIGDRTRAFLKIQDGCDYKCTYCTIPMARGIS 168 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKG 259 S ++ ++ A+K+ +N + EI L G N+ + GKG G K TF +L+ +L ++G Sbjct: 169 RSDTIENILQNAKKISENNIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELIQALDTVEG 227 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + RLR ++ P + D I +P+ H+P+QSGS+ ILK M RR+ Y + Sbjct: 228 IERLRISSIEPNLLKDETIAFVAQSRSFVPHFHIPLQSGSNDILKKMKRRYLRELYEDRV 287 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +IR + PD I D IVGFPGETD+ F T ++++ + F YS R T M Sbjct: 288 AKIRELMPDACIGVDVIVGFPGETDEHFLETYHFLNQLDISYLHVFTYSERANTEAVEME 347 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRS 432 V V+A+R L+ +++ F + +G +V+ E HG + + ++ Sbjct: 348 GVVPSEVRAKRSRMLRGLSAKKRHHFYEQQLGSTHQVIFESDNKDGFMHGFTENYVKVKT 407 Query: 433 PW-------LQSVVL 440 P+ LQ VVL Sbjct: 408 PFAPELVNTLQKVVL 422 >gi|220932034|ref|YP_002508942.1| MiaB-like tRNA modifying enzyme [Halothermothrix orenii H 168] gi|219993344|gb|ACL69947.1| MiaB-like tRNA modifying enzyme [Halothermothrix orenii H 168] Length = 442 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 136/451 (30%), Positives = 229/451 (50%), Gaps = 33/451 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL--GR 86 S GC N DS M + + + V+ ++ AD+IV+NTC I++ E + + L G+ Sbjct: 8 SLGCPKNQVDSEIMLGFLSNDKNFTEVDDLELADVIVINTCGFIQDAKEESIETILEAGQ 67 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +++ N + ++V GC+ Q EEIL P V+ ++G + ++ +++ G Sbjct: 68 YKSVGNCK-------ALIVTGCLTQRYREEILENMPEVDAILGTGNFDKIIPTIKKVLKG 120 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +RV + + D + A++ I EGCD CT+C +PY RG SR Sbjct: 121 QRVSNIGNPT------FNYNDVPRKIRTSHFAYVKIAEGCDNRCTYCSIPYIRGKLTSRP 174 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + + +E KL G+ EI L+ Q+ + GK + G K LL L EI + +R Sbjct: 175 IEDIYNEVVKLGQQGIKEIILVAQDTTQY-GKDIYG-KSMLLPLLKELVEIDSIKWIRLL 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P ++D L+ + + + YL LP+Q S++I + MNR+ + E +I R+R + Sbjct: 233 YCYPERITDELLFFIAENNKICNYLDLPIQHSSNKIRRLMNRKGSREELINLIKRVRELV 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDI I + IVGFPGETD+DF + V +I + + FKYS TP ++ Q+ E + Sbjct: 293 PDIVIRTSLIVGFPGETDEDFNDLFNFVKEIKFDRLGVFKYSREENTPAASFPGQISEKI 352 Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439 K ER ++ +Q+K+ + N +G+ ++VLI++ E +GR+ P + + V Sbjct: 353 KDERYNKIMEVQQKISRNK---NQERIGEKVKVLIDELTDEMA--IGRTQYDAPEIDNQV 407 Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468 S N I GD+I R+T+ L GE + Sbjct: 408 YVSCNGKISEGDMILCRVTEAYEYDLLGECI 438 >gi|224582664|ref|YP_002636462.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467191|gb|ACN45021.1| hypothetical protein SPC_0849 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 441 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 141/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G VVV GC+ E ++I P V + GP +Y ++ + + Sbjct: 67 IGEALN-------ENGK--VVVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V++++ +E G+ Sbjct: 343 GANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ + L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441 >gi|253580717|ref|ZP_04857981.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848088|gb|EES76054.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 422 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 122/436 (27%), Positives = 235/436 (53%), Gaps = 28/436 (6%) Query: 44 MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103 M+ + GYE V AD+ ++NTC + A K L + + + D +V Sbjct: 1 MQQLLEEAGYEIVPFEPGADVYLINTCTVTNIADRKSRQMLHKAKKM-------NPDAIV 53 Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE----RARFGKRVVDTDYSVEDK 159 + AGC Q + E L + V++++G + ++LE + K V+ + + E Sbjct: 54 IAAGCYVQTD-EGKLDKDEAVDLILGNNQKGNIVQVLEEYEQQHTKQKHVLKINQTKE-- 110 Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219 +E L+I + V A++ +Q+GC++FCT+C++PY RG SR ++ V+DE L Sbjct: 111 YEELAID----HTAEHVRAYIKVQDGCNQFCTYCIIPYARGRVRSRKIAHVMDEVHALAA 166 Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279 G E+ L G +++++ EK T L+ ++ E++G+ R+R + P +++ ++ Sbjct: 167 KGYKEVVLTGIHLSSYGVDFPAEEKETLLSLIRAVHEVEGIERIRLGSLEPGIITEEFVQ 226 Query: 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339 + L + P+ HL +QSG D L+ MNRR+ + EY + +R + A+++D IVGF Sbjct: 227 SIAALPKMCPHFHLSLQSGCDTTLERMNRRYRSAEYAEKCGLLRKYLGNPALTTDVIVGF 286 Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERLLCLQK 396 P ET++DF+ + D V+ I + + FKYS R GT + M L + + V+++++L L + Sbjct: 287 PMETEEDFQDSYDFVESIHFYETHIFKYSRRHGTKAAAMSGQLTEAQKAVRSDKMLALNE 346 Query: 397 KLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRS-PWLQSVVLNSKNHNIGDIIKV 453 + ++ + + +G ++VL+E+ + G+ +G S ++++ V N+++ DII V Sbjct: 347 QHAKE---YEKSMLGGELKVLLEEEVEINGEQWYIGHSMEYIKTAVKKQDNYSVNDIITV 403 Query: 454 RITD-VKISTLYGELV 468 + + ++ TL GE++ Sbjct: 404 KAEEFLEEHTLTGEVL 419 >gi|327400612|ref|YP_004341451.1| MiaB family RNA modification protein [Archaeoglobus veneficus SNP6] gi|327316120|gb|AEA46736.1| RNA modification enzyme, MiaB family [Archaeoglobus veneficus SNP6] Length = 417 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 230/448 (51%), Gaps = 42/448 (9%) Query: 26 RFFVKSYGCQMNVYDS--LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 R +++YGC MN DS +R E S+ +E ++S++DAD++V+N+C + + K+ + Sbjct: 2 RVAIETYGCTMNQADSDIIRAE---VSREFE-LSSVEDADVVVINSCGVIDYTERKILNR 57 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 ++R + + VV+AGC+ + ++++ + N + P +R+ E+++ A Sbjct: 58 ARQLRQMGKT---------VVMAGCLPRIAKKKVME---VANAAISPDNVHRIDEVIKAA 105 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G ++ D S DK R G A ++I EGC CTFC + RG Sbjct: 106 VSGNKLFLLDKSEIDK------TRCEKQRMAGGIAIVSIAEGCTGRCTFCATRFARGRLR 159 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S S +V+E +K + G EI L Q+ A+ G + DLL +S I+G+ R+ Sbjct: 160 SFSPDGIVEEIKKAVRAGYVEIQLTSQDTGAY-GHDIG---TNLPDLLEKISAIEGMFRV 215 Query: 264 RYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R +PR M D L+ A + + + +LHLPVQSG +++L+ M R H EY +++ Sbjct: 216 RVGMMNPRHAYSMLDDLLNAF-ESEKIYKFLHLPVQSGDEKVLRDMGRDHGVEEYEEVVS 274 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R D+ IS+D IVGFP E+++ F ++DLV + +YSPR GTP + + Sbjct: 275 AFRKRFDDVMISTDIIVGFPTESEEAFYKSLDLVRRTRPDLVNVTRYSPRKGTPAFRLRD 334 Query: 381 QVD--ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 D + ++ + L +++E++ N VG+ +V+I K L+ R+ + V Sbjct: 335 MPDWIKKDRSRAVTRLANRIKEKK---NSTFVGKTFDVVITKRS---NGLLSRTNAYRPV 388 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGE 466 +L K IG+ +VR+TD + L GE Sbjct: 389 IL--KQGEIGEFCRVRVTDYTPTHLIGE 414 >gi|159902657|ref|YP_001550001.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9211] gi|238066463|sp|A9BCV9|RIMO_PROM4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|159887833|gb|ABX08047.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9211] Length = 462 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 132/454 (29%), Positives = 226/454 (49%), Gaps = 44/454 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRIRNLK 91 GC+ N+ D+ M + S+GY ++ DDA+++V+NTC E+A E+ V + +G K Sbjct: 30 GCEKNLVDTEHMMGLLASEGYGVSSNTDDAEVVVVNTCSFIEQAREESVRALVGLADQGK 89 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151 +++AGC+AQ E+L P +VG Y + E+L+R R G+RV Sbjct: 90 E----------IIIAGCLAQHFKSELLESIPEAKAIVGTGDYQNIIEVLQRVRQGERV-- 137 Query: 152 TDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 S KF + D R R ++L + EGC+ C FC++P RG + SRS+ Sbjct: 138 NQVSENPKF----VGDENLPRYRTTGRFVSYLKVAEGCNYRCAFCIIPTLRGNQRSRSVQ 193 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267 +V+EA +L G+ E+ L+ Q + G L G + +DLL +LS + +R+ Y Sbjct: 194 SIVNEANQLAKEGIQELILISQ-ITTNYGMDLYG-RPYLADLLRALSHVDIPWIRIHY-- 249 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++ ++ A+ ++ ++PY LP+Q +L++MNR + +++RI+ P Sbjct: 250 AYPTGLTPEVVLAYKEVPNVLPYFDLPLQHSHPDVLRAMNRPWQSDVSSALLNRIKEQLP 309 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD---E 384 + + + IVGFPGET F V+ + F +S GT + + QV Sbjct: 310 EAVMRTTLIVGFPGETKAQFDHLCAFVENQKFDHVGVFAFSREEGTEAAKLPNQVPFEIA 369 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ-------- 436 + ++L+ +Q+ + + N A +GQ ++VLIE+ G+L+GRS Sbjct: 370 QARKDKLVAIQQPISAAK---NQALIGQTVDVLIEREDLATGELIGRSARFAPEVDGEVR 426 Query: 437 ---SVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 S VL + H G I+ IT ++ L GE+ Sbjct: 427 LRPSQVLFNDLH--GKIVPALITGSELYDLTGEI 458 >gi|284162243|ref|YP_003400866.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631] gi|284012240|gb|ADB58193.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631] Length = 423 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 136/443 (30%), Positives = 232/443 (52%), Gaps = 27/443 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGC MN DS M + ++ +E V+S D+AD++V+N+C + + K+ L Sbjct: 3 KVYIETYGCTMNQSDSDIMRGIL-AKNFELVDSADEADVVVINSCGVVDFTERKI---LK 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R +LK K VV+AGC+ + ++ L S + +V P + + +++ Sbjct: 59 RAESLKRQGKK------VVMAGCLPRIATKKCLEVS---DALVSPDNVHVIDLVVKSVLK 109 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G++ + D + DK E +S V + A ++I EGC C+FC + RG S Sbjct: 110 GEKPILIDRTDVDKSE-ISCVKRRL--RENAIAIVSIAEGCTGRCSFCATRFARGRLRSF 166 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +VDE RK ++NG EI + Q+ A+ GLD + DLL ++SEI+G R+R Sbjct: 167 KFESIVDEVRKCVENGFKEIQITSQDTGAY---GLDKGRYMLPDLLRAISEIEGDFRVRV 223 Query: 266 TTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +PR +M D L+ A + + + ++H+PVQSG + +L+ MNR H+ ++ +++ Sbjct: 224 GMMNPRHAVEMLDDLLNAF-ESEKMYKFIHIPVQSGDENVLRDMNRDHSVEDFIEVVKAF 282 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R D+ +S+D IVGFP ET++ F T +L+ + ++S R TP L+++ Sbjct: 283 RRRFDDVMVSTDVIVGFPTETEEAFWRTYELIKNVEPDIVNITRFSKRPFTPAYK-LKEI 341 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 + ER L + R + N +G+ + VLI K+GK KL R+ + VV+ Sbjct: 342 HGWIVKERSRKLTELARSIGLKRNRRFIGKRLRVLITKNGKNGTKL-ARADSYRPVVV-- 398 Query: 443 KNHNIGDIIKVRITDVKISTLYG 465 + NIG+ I VRI D + L G Sbjct: 399 REGNIGEFINVRIVDCAFNYLVG 421 >gi|239617933|ref|YP_002941255.1| MiaB-like tRNA modifying enzyme YliG [Kosmotoga olearia TBF 19.5.1] gi|239506764|gb|ACR80251.1| MiaB-like tRNA modifying enzyme YliG [Kosmotoga olearia TBF 19.5.1] Length = 433 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 125/440 (28%), Positives = 221/440 (50%), Gaps = 23/440 (5%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC N+ D + + +G+E N ++ A ++V++TC ++A ++ + R+ + K Sbjct: 9 GCPKNIADMDNFKGIMLKRGHEFANGVESAGIVVIDTCGFIDEAKKESIEEILRLCSFK- 67 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 +E DL V+ GC+ Q E+ P ++ ++G + +L +L+E F Sbjct: 68 ---EEKPDLKVIAVGCLVQRYYRELKEGIPEIDGLIGVTSPEKLADLIEAGNF------- 117 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 + +E + ++ D + +++ I +GCD+ C FC +P +G SR + ++ Sbjct: 118 -FFIE---KPSTVYDFKFRTYGKPYSYVKIGDGCDRGCAFCSIPSFKGSSRSRPIEEIEK 173 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 E L+ G+ EI L+ Q+ + G + G K DLL SL+EI G +R HP Sbjct: 174 EVCFLVSEGIREIVLVSQDTTQY-GVDIYG-KQALPDLLKSLNEIPGDFWIRVMYLHPDH 231 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 +++ +I + L+ ++ Y +PVQSGSD ILK M R A E + + ++IR+ D+ + Sbjct: 232 LTEGIINSILKLEKVVNYFDVPVQSGSDYILKRMGRTKKAGELKAMFEKIRAKESDVTLR 291 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 + +VGFPGET F T++ V+ + + + F YSP GTP + +DEN+ + L Sbjct: 292 TTIMVGFPGETRRTFEETLEFVNDVKFDKLGGFVYSPEEGTPAYSFKMTIDENMARQYLD 351 Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS----KNHNIG 448 L E N G++++VLIE++ +E ++GRSP + S + G Sbjct: 352 ELLDLQDEISYELNQRHFGKVLKVLIEENTEE--VMIGRSPHFAPEIDGSIFLKRADEAG 409 Query: 449 DIIKVRITDVKISTLYGELV 468 + + RIT V L G +V Sbjct: 410 EFVMCRITGVYEHDLEGVIV 429 >gi|170723177|ref|YP_001750865.1| ribosomal protein S12 methylthiotransferase [Pseudomonas putida W619] gi|238066575|sp|B1JD88|RIMO_PSEPW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|169761180|gb|ACA74496.1| MiaB-like tRNA modifying enzyme YliG [Pseudomonas putida W619] Length = 443 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 150/474 (31%), Positives = 237/474 (50%), Gaps = 67/474 (14%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 8 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ EG I P V V GPQ Y Sbjct: 67 IGEA-------IKENGK--VIVTGCMGVEEGS-IRDVHPSVLSVTGPQQY---------- 106 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 107 ---EQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 163 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR + +V+ EA +L+ GV EI ++ Q+ +A W G+ + K Sbjct: 164 RGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPV---KTRM 220 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 +L +LS + VRL Y +P + A G ++PYL +P Q S ++LKSM Sbjct: 221 LELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKSMK 277 Query: 308 RRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 R A+E R + RI++ R P++ I S FIVGFPGET++DF+ +D + + + Sbjct: 278 R--PAFEDRTLA-RIKNWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGC 334 Query: 365 FKYSPRLGTPGSNM-LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 F+YSP G P +++ LE+V ++VK E R + Q+ + ++ +G+ IEVLI++ Sbjct: 335 FQYSPVEGAPANDLGLEEVPDDVKQERWDRFMAHQQAISSARLQLR---IGKEIEVLIDE 391 Query: 421 HGKEKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +E+G VGRS P + V +H + GD ++ R+ D ++ E V Sbjct: 392 V-EEQGS-VGRSFFDAPEIDGSVFIDGDHGLKPGDKVRCRVVDADEYDMWAEPV 443 >gi|194476759|ref|YP_002048938.1| hypothetical protein PCC_0286 [Paulinella chromatophora] gi|171191766|gb|ACB42728.1| hypothetical protein PCC_0286 [Paulinella chromatophora] Length = 444 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 130/453 (28%), Positives = 226/453 (49%), Gaps = 40/453 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N D+ + + + GY+ + + A L+V+NTC ++A E+ IR + Sbjct: 12 GCEKNRVDTEHILGLLAAAGYQISANENTASLVVVNTCSFIQQAREE------SIRTI-- 63 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 + E G L++ AGC+AQ EE+L P ++G Y + +L++ G+R+ Sbjct: 64 VELAEQGKELII-AGCLAQHFQEELLNYIPEAKAIIGTGDYQHIVNILKKVEAGERI--- 119 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 V D E + + D R R ++ A+L + EGCD CTFC++P RG + SR + Sbjct: 120 -NKVSD--EPIFLADEHLPRYRSISNPVAYLKVAEGCDYSCTFCIIPKLRGKQRSRPIES 176 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRLRYTT 267 +V EA L GV E+ L+ Q + GLD K ++LL +L ++ +R+ Y Sbjct: 177 IVAEAHNLAAQGVKELILISQITTNY---GLDIYGKSKLTELLRALGQVDIPWIRVHY-- 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P +++ ++ A+ D+ ++PYL LP+Q +L++MNR +I IR P Sbjct: 232 AYPTGLTNDVLAAYKDVPNILPYLDLPLQHSHPNMLRAMNRPWQETINENVIKAIRKNLP 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + + + FI GFPGET++ F ++ + + + F +SP GT + M + + Sbjct: 292 NAVLRTTFITGFPGETEEYFEHLINFIKEQCFDHVGVFTFSPEDGTQAATMTNHIPFEIA 351 Query: 388 AE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440 E R++ LQ+ + + N C+G I++VLIE+ G ++GR +P + V Sbjct: 352 QERRNRIMELQQPIARAK---NIQCIGNIVDVLIEQEQPNTGDMIGRCSRFAPDVDGEVH 408 Query: 441 -----NSKNHNIGDIIKVRITDVKISTLYGELV 468 + +G I++V IT L GE+V Sbjct: 409 VIPRSDGMRARLGTIVQVLITGADTYDLRGEIV 441 >gi|16759769|ref|NP_455386.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142458|ref|NP_805800.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213051906|ref|ZP_03344784.1| hypothetical protein Salmoneentericaenterica_02590 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428067|ref|ZP_03360817.1| hypothetical protein SentesTyphi_22295 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213853079|ref|ZP_03382611.1| hypothetical protein SentesT_09591 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289827178|ref|ZP_06545920.1| hypothetical protein Salmonellentericaenterica_16188 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|81515236|sp|Q8Z861|RIMO_SALTI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|25305455|pir||AH0603 conserved hypothetical protein yliG [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502062|emb|CAD05298.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138088|gb|AAO69649.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 441 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPHYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ + + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPMKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V++++ +E G+ Sbjct: 343 GANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ + L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441 >gi|325576888|ref|ZP_08147503.1| MiaB family RNA modification enzyme [Haemophilus parainfluenzae ATCC 33392] gi|325161094|gb|EGC73212.1| MiaB family RNA modification enzyme [Haemophilus parainfluenzae ATCC 33392] Length = 453 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 143/467 (30%), Positives = 234/467 (50%), Gaps = 52/467 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P FV S GC N+ DS R+ + GY V S ++ DL+++NTC + A ++ Sbjct: 13 TPNIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQESLE 71 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G ++E G V+V GC+ E ++I + P V V GP +Y + Sbjct: 72 AIGE-------ALEENGR--VIVTGCLGAKE-DQIRQVHPKVLEVSGPHSYETV-----M 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A+ K V +++ + G A+L I EGCD CTFC++P RG Sbjct: 117 AQVHKYVPKPEHNPYTSL----VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSLRGDL 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTF-------SDL 250 SRS++QV+DEA++L D GV E+ ++ Q+ +A+ R +G G K F +DL Sbjct: 173 ESRSITQVLDEAKRLADAGVKELLVVSQDTSAYAMDTQRKEG--GVKTAFWNGMPIKNDL 230 Query: 251 LYSLSEIKGL---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 + ++ L VRL Y +P + A G +L+PYL +P+Q S +ILK+M Sbjct: 231 MTLCKQLGKLGIWVRLHYVYPYPHVDDLIPLMAEG---LLLPYLDIPLQHASPKILKAMK 287 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + I + R + PD+ + S FIVGFPGET++DF+ +D + + + FK+ Sbjct: 288 RPGKIDRTLERIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKF 347 Query: 368 SPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 SP G + M +QV E+VK E R + LQ+++ +++ +GQ ++V++++ E Sbjct: 348 SPVEGALATEMADQVPEDVKEERFHRFMQLQQEISAERLKQK---IGQTLDVIVDEIDNE 404 Query: 425 K--GKLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 G+ +P + +V L+ +G+ IKV IT L+G Sbjct: 405 GIIGRTKADAPEVDGLVYIENLSGTPVKVGEFIKVTITHSDEYDLWG 451 >gi|77919453|ref|YP_357268.1| putative MiaB-like tRNA modifying enzyme [Pelobacter carbinolicus DSM 2380] gi|77545536|gb|ABA89098.1| putative MiaB-like tRNA modifying enzyme [Pelobacter carbinolicus DSM 2380] Length = 432 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 126/442 (28%), Positives = 215/442 (48%), Gaps = 18/442 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + + GC+ N ++S M + GY R++ ADL+++NTC + + + + R Sbjct: 5 FAIVTLGCKTNQFESAAMAEQLEQAGYRRIDYSAGADLVIVNTCTVTAATDSQSRNLIRR 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 R L + VVV GC AQ + + + P V+ V+G + L L+ Sbjct: 65 ARRLNPA-------CRVVVTGCYAQIDPAAV-QNLPGVDRVLGNEEKSELLHWLDADGPK 116 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +V D + F+ ++ +R R AF+ IQ GC+ FC++C++P+ RG S Sbjct: 117 VQVGDIRQARGVTFD----LNAFGSRSR---AFVQIQNGCNAFCSYCIIPHARGPSRSAL 169 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 QVVD+ K G EI L G ++ + G L + +DL+ L + + RLR Sbjct: 170 PQQVVDQVCKFCTAGFPEIVLTGIHIGGY-GNDLQ-PPLSLADLVRRLLDDTQVSRLRLG 227 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P+++S LI + L P+ H+P+Q+G D +LK+MNR ++ ++R +++ I+ Sbjct: 228 SIEPQEVSMELIDLVAHCERLCPHFHIPLQAGDDAVLKAMNRHYSVKDFRNLVEGIKLRV 287 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P AI D I GFPGET++ F T+ LV + F +S R GTP + M Q+ V Sbjct: 288 PQAAIGLDIITGFPGETENAFANTLALVRDLPVTHLHVFPFSKRPGTPAATMRHQISGTV 347 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 +R L+ +Q + +G+ ++V++E K+ K G S V ++ +H Sbjct: 348 ARQRAAELRALGEGKQAEYARGFIGKNLQVVVEG-SKQGSKRHGLSVHYLPVEFDTDDHW 406 Query: 447 IGDIIKVRITDVKISTLYGELV 468 V + + TL G+L+ Sbjct: 407 NQRTATVCVETTRQGTLLGKLI 428 >gi|258544695|ref|ZP_05704929.1| RNA modification enzyme, MiaB-family [Cardiobacterium hominis ATCC 15826] gi|258520062|gb|EEV88921.1| RNA modification enzyme, MiaB-family [Cardiobacterium hominis ATCC 15826] Length = 430 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 139/442 (31%), Positives = 206/442 (46%), Gaps = 33/442 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC + DS R+ + GY + DDADL+++NTC I E AE + N Sbjct: 12 SLGCPKALVDSERILTQINADGYAITDRYDDADLVIVNTCGFINEAVAESL--------N 63 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + +++ G V+V GC+ + E I R P V + GPQ Y + + Sbjct: 64 TISEALRQNGK--VIVTGCLG-VKPEIIRARCPDVLAITGPQAYESVMSAVHE------- 113 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + + L I G A+L I EGCD CTFC++P RG +SR Sbjct: 114 -HLPKPAHNPYLDL-IPPAGLKLTPRHYAYLKIAEGCDHHCTFCIIPDLRGRLVSRPADA 171 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 V+ EA+ L+ GV E+ ++ Q+ +A+ G D L L ++ VRL Y + Sbjct: 172 VLKEAQNLVKLGVKELLVVSQDTSAY---GADLGARGIHALARELGKLDAWVRLHYVYPY 228 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P D+ D LI D ++PYL +P+Q S RILK+M R + I R R + PD+ Sbjct: 229 P-DVDD-LIPLMAD-GAILPYLDIPLQHASPRILKAMRRPGNRERTLERIRRWREICPDL 285 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 A+ S FIVGFPGET+ DF + +++ +A F YSP G + + +Q+ E++K E Sbjct: 286 ALRSTFIVGFPGETEADFEELLAFIEEADINRAGCFAYSPVEGAAANALPDQIPEDIKQE 345 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW----LQSVVLNSKNH 445 RL VG ++ V+I+ + GR+P+ + VV S Sbjct: 346 RLQRFMAAQEAVSARLLADKVGSVLPVMIDAVDADNLAATGRTPYDAPEIDGVVHISDID 405 Query: 446 NI--GDIIKVRITDVKISTLYG 465 I GDI+ V I D LYG Sbjct: 406 GIKPGDIVHVEIEDSDAHDLYG 427 >gi|331269617|ref|YP_004396109.1| MiaB family RNA modification protein [Clostridium botulinum BKT015925] gi|329126167|gb|AEB76112.1| RNA modification enzyme, MiaB family [Clostridium botulinum BKT015925] Length = 444 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 131/439 (29%), Positives = 228/439 (51%), Gaps = 30/439 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + ++ E VN+ ++AD+I++NTC E + ++ + + Sbjct: 10 SLGCDKNRIDSELLLGKL-NEKNEIVNNPNEADIIIVNTCGFIETSKQESIDTIIEMAQY 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K+ K +++ GC+ Q +E+ P +++++G Y + ++ + Sbjct: 69 KDKNCK-----MIIATGCLTQRYSKELQELIPEIDIMLGVNDYANIQNYIDEFFENHNKI 123 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + K+ +SI +G KR +T A++ I EGCD FCT+C++P RG SR Sbjct: 124 -----CQCKYSDVSINEG----KRILTTNKHVAYIRISEGCDNFCTYCIIPKIRGKYRSR 174 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S+ +V EA++L GV E+ L+GQ+ A G+ + E +L+ ++SEI+ + +R Sbjct: 175 SIDSIVKEAKELSAMGVKELILVGQDT-AIYGRDIYNEN-KLPELIRAISEIEAIEWIRV 232 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P +++D LI+ D + YL +P+Q S+ +LK MNRR T + I ++RS Sbjct: 233 LYTYPEEITDELIEEIKSNDKVCNYLDIPIQHVSNTVLKRMNRRSTKEIISENIRKMRSE 292 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 D+ + + IVGFPGET+D+F + + +I + FKYS T + M +Q+ E Sbjct: 293 IKDLCLRTSIIVGFPGETEDEFNELKEFIKEIKFDNLGVFKYSQEEDTAAARMKDQISEE 352 Query: 386 VKAERLLCLQKKLREQQVS--FNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL- 440 +K RL L + +QQVS N +G++ +VLIE H E G+ +P + + Sbjct: 353 LKQSRLEELM--IIQQQVSKEKNKNKIGKVYKVLIEGHNDEYWIGRNYQMTPEIDGAIFF 410 Query: 441 -NSKNHNIGDIIKVRITDV 458 K N+G+ I ++ITD Sbjct: 411 KCDKILNVGEFIYIKITDA 429 >gi|240949880|ref|ZP_04754204.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus minor NM305] gi|240295671|gb|EER46378.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus minor NM305] Length = 444 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 136/456 (29%), Positives = 222/456 (48%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ S GY + S + ADL+++NTC + A ++ +G Sbjct: 12 SLGCPKNLVDSERILTELRSDGYNIIPSYEGADLVIVNTCGFIDSAVQESLESIGEALEA 71 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 V+V GC+ E + I P V + GP +Y + K V Sbjct: 72 NGK---------VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV-----MKHVHKYVP 116 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +Y + + L + G A+L I EGCD CTFC++P RG SRS+ QV Sbjct: 117 KPEY---NPYVTL-VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSIVQV 172 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSD----------LLYSLSEIK 258 +DEA++L+D+GV E+ ++ Q+ +A+ K +G K F + L L + Sbjct: 173 LDEAKRLVDSGVKELLIVSQDTSAYALDKKKEEGTKTVFWNGMPIKNNLITLCEQLGSMG 232 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 VRL Y +P + A G + +PYL +P+Q S +ILK+M R + + Sbjct: 233 VWVRLHYVYPYPHVDDLIPLMAQGKI---LPYLDIPLQHASPKILKAMKRPGSIERTLER 289 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I + R + P++ + S FIVGFPGET++DF+ +D + + + FK+SP G + M Sbjct: 290 IKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKFSPVEGAVATEM 349 Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433 +QV E+VK E R + LQ+++ Q++ +G+ + V++++ E G+ + +P Sbjct: 350 ADQVPEDVKEERFHRFMQLQQEISAQRLQQK---IGKTLAVIVDEIDNEGIIGRSMADAP 406 Query: 434 WLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 + VV L+ + G II V IT+ L+G Sbjct: 407 EIDGVVYVDNLSEMEVSAGQIISVTITNADEYDLWG 442 >gi|16764214|ref|NP_459829.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62179417|ref|YP_215834.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167992097|ref|ZP_02573195.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230763|ref|ZP_02655821.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236790|ref|ZP_02661848.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168263635|ref|ZP_02685608.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466463|ref|ZP_02700325.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819992|ref|ZP_02831992.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445570|ref|YP_002040091.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194472522|ref|ZP_03078506.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734067|ref|YP_002113944.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249990|ref|YP_002145812.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197362974|ref|YP_002142611.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242582|ref|YP_002214817.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390615|ref|ZP_03217226.1| MiaB-like tRNA modifying enzyme YliG [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207856287|ref|YP_002242938.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|75484309|sp|Q57RA8|RIMO_SALCH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|81523437|sp|Q8ZQM1|RIMO_SALTY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238066584|sp|B5F0X7|RIMO_SALA4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238066587|sp|B5FPB9|RIMO_SALDC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238066588|sp|B5QXV6|RIMO_SALEP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238066591|sp|B4T0B2|RIMO_SALNS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238066593|sp|B5BBX8|RIMO_SALPK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238066626|sp|B4TQZ6|RIMO_SALSV RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|16419359|gb|AAL19788.1| putative Fe-S oxidoreductases family 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62127050|gb|AAX64753.1| putative Fe-S oxidoreductases family 1 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194404233|gb|ACF64455.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194458886|gb|EDX47725.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709569|gb|ACF88790.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630937|gb|EDX49523.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094451|emb|CAR59967.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213693|gb|ACH51090.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197290104|gb|EDY29461.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937098|gb|ACH74431.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603060|gb|EDZ01606.1| MiaB-like tRNA modifying enzyme YliG [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205329653|gb|EDZ16417.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334686|gb|EDZ21450.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205343222|gb|EDZ29986.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347796|gb|EDZ34427.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708090|emb|CAR32381.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261246108|emb|CBG23911.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301157436|emb|CBW16925.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911876|dbj|BAJ35850.1| hypothetical protein STMDT12_C09070 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085126|emb|CBY94913.1| Ribosomal protein S12 methylthiotransferase rimO S12 methylthiotransferase; S12 MTTase; Ribosome maturation factor rimO [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226432|gb|EFX51483.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322713887|gb|EFZ05458.1| RNA modification enzyme [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129158|gb|ADX16588.1| hypothetical protein STM474_0877 [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326622569|gb|EGE28914.1| putative FeS oxidoreductase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332987783|gb|AEF06766.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 441 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ + + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V++++ +E G+ Sbjct: 343 GANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ + L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441 >gi|289578370|ref|YP_003476997.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter italicus Ab9] gi|297544647|ref|YP_003676949.1| MiaB-like tRNA modifying protein YliG [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528083|gb|ADD02435.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter italicus Ab9] gi|296842422|gb|ADH60938.1| MiaB-like tRNA modifying enzyme YliG [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 436 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 129/446 (28%), Positives = 227/446 (50%), Gaps = 28/446 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS +M + +GY VN ++AD++++NTC E A + ++ + Sbjct: 8 SLGCPKNTVDSEKMIAILKEKGYNIVNDENEADILIINTCSFIEDAKRESIEYI-----I 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + ++K+ ++ GC+++ +E+L+ P ++ V+G + ++ E++E GK V+ Sbjct: 63 EMGKLKKHKLKYLIATGCLSERYNKELLKELPELDAVIGTGDFPKIAEVIEEIEKGKTVL 122 Query: 151 DTDYSV---EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + ++ ++ +R+ Y A+L I EGC C+FC +P RG SR + Sbjct: 123 EYGHANLLNDEGIQRILTTPNYY-------AYLKIAEGCSNVCSFCAIPRIRGRYRSRKM 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 ++ EA +L+ G E+ L+ Q+ + G+D +K LL LS I L +R Sbjct: 176 EDILKEAEELVKKGAKELILIAQDTTKY---GIDIYKKFMLPQLLKELSLIPNLKWIRLL 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P ++D LI+ ++ Y+ +P+Q +D +LK M R T + ++I+++R++ Sbjct: 233 YAYPDSVTDELIEEIKANKKVVKYIDIPLQHSNDEVLKRMKRHTTRQKIEEVINKLRTI- 291 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P++ I + F+VGFPGET+++F V + + + F YS GT M Q+ ++V Sbjct: 292 PNMVIRTTFMVGFPGETEEEFEDLKHFVKEKRFERVGVFAYSREEGTKSYYMKPQIKKSV 351 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL-- 440 K R L + +E N + VG+ +EVLIE G E G GRS P + VV Sbjct: 352 KLRRQQELMEIQKEISYQHNLSKVGKQLEVLIE--GFEDGIYYGRSYMDAPEIDGVVYVK 409 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466 + K G+ + V ITD L GE Sbjct: 410 SDKKLTAGEFVVVTITDAYEYDLVGE 435 >gi|255535760|ref|YP_003096131.1| MiaB family protein, possibly involved in tRNA or rRNA modification [Flavobacteriaceae bacterium 3519-10] gi|255341956|gb|ACU08069.1| MiaB family protein, possibly involved in tRNA or rRNA modification [Flavobacteriaceae bacterium 3519-10] Length = 454 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 131/424 (30%), Positives = 210/424 (49%), Gaps = 36/424 (8%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 + + P+ + GC++N ++ + GY++V D AD+ V+NTC + E A + Sbjct: 7 ETLQPKTAAYHTLGCKLNFSETSTIARQLTGAGYQKVGFDDKADVYVINTCSVTENADRE 66 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYR-- 135 + R +K D LVV+ GC AQ + EEI S I V++V+G + + Sbjct: 67 CKYHVKRA-------MKANPDGLVVILGCYAQLKPEEI---SAIEGVDLVLGAKEKFNIL 116 Query: 136 --LPELLERARFGK----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189 L +L + A G + +TD+ + G Y+ AFL +Q+GCD Sbjct: 117 SYLGDLQKTANHGLIHSCEIDETDFFI-----------GSYSIGDRTRAFLKVQDGCDYK 165 Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CT 246 CT+C +P RGI S ++ VV A ++ G+ EI L G N+ + GKG G K T Sbjct: 166 CTYCTIPLARGISRSDTIENVVQNAAEIAAKGIKEIVLTGVNIGDY-GKGEFGNKKHEHT 224 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F DL+ L ++G+ R+R ++ P + D I+ +P+ H+P+QSGSD +LK M Sbjct: 225 FLDLISELDLVEGIERIRISSIEPNLLKDESIELVARSKRFVPHFHIPLQSGSDDLLKKM 284 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 RR+ Y + I++IRSV PD I D I+GFPGET++ F T + + + F Sbjct: 285 KRRYLTALYSERINKIRSVVPDACIGVDVIIGFPGETEEKFLETYRFLSDLPISYLHVFT 344 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 YS R T + M V + R L+ +++++F + G+ + VL E H + G Sbjct: 345 YSERENTEAAAMDGAVPVPERKRRNKMLRILSEKKKMAFYQSQTGKTLPVLWE-HENKNG 403 Query: 427 KLVG 430 + G Sbjct: 404 LMYG 407 >gi|149378381|ref|ZP_01896082.1| hypothetical protein MDG893_01565 [Marinobacter algicola DG893] gi|149357330|gb|EDM45851.1| hypothetical protein MDG893_01565 [Marinobacter algicola DG893] Length = 447 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 141/455 (30%), Positives = 218/455 (47%), Gaps = 43/455 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ GY+ V + +DAD++V+NTC + A ++ +G Sbjct: 19 SLGCPKALVDSERILTQLRLDGYDVVPTYNDADIVVVNTCGFIDAAKQESLDAIGEA--- 75 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I E G V+V GC+ E E I P V V GP Y + + + + Sbjct: 76 ----INENGK--VIVTGCMG-VEAERIRDTHPGVLAVSGPHAYEEVVGAVHQFVPPNKQ- 127 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L G R A+L I EGC+ CTFC++P RG +SR + V Sbjct: 128 ------HDPFTDLVPPQGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDV 180 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 +DEA++L+D GV E+ ++ Q+ +A W+G+ L K L +L E+ Sbjct: 181 MDEAKRLVDAGVKELLVISQDTSAYGVDTKYRTGFWQGRPL---KTKMQSLCEALGEMGV 237 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S ++LK+M R + + I Sbjct: 238 WVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPFQHASPKVLKAMKRPAHDSKTLERI 294 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D +D+ + +FKYSP G + + Sbjct: 295 RKWRDICPELTIRSTFIVGFPGETEEDFQYLLDWLDEAQLDRVGAFKYSPVEGAKANEIE 354 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435 V E VK ERL +K + A +GQ I+VLI++ +E +GRS P + Sbjct: 355 GAVPEEVKEERLARFMEKQAGISAARLRAKIGQTIDVLIDEVDEEGA--IGRSKADAPEI 412 Query: 436 QSVV-LNSKNHNI-GDIIKVRITDVKISTLYGELV 468 +V LN + + G I++ + L+ LV Sbjct: 413 DGMVYLNDETGLVPGQIVQAMVEHADEHDLWASLV 447 >gi|188996972|ref|YP_001931223.1| MiaB-like tRNA modifying enzyme [Sulfurihydrogenibium sp. YO3AOP1] gi|188932039|gb|ACD66669.1| MiaB-like tRNA modifying enzyme [Sulfurihydrogenibium sp. YO3AOP1] Length = 438 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 121/431 (28%), Positives = 214/431 (49%), Gaps = 21/431 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC+MN +++ +E+ F +GY + D AD+ V+NTC + A IR Sbjct: 14 TLGCRMNQFETSALEEQFQVKGYSITDFEDVADIYVINTCTVTNDADRTSRKI---IRQA 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARFGK 147 K + + +VV GC AQ EE+ + I ++V+G + E++E +F Sbjct: 71 K----RRNPNAVVVATGCYAQVSPEELAKMEEI-DLVIGNSHKTAVFEIVENYINEKFEN 125 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 +V + E++F+ I G + +QEGC+ FC+FC++P+ RG S + Sbjct: 126 KVFIENIFRENQFKTFQISTFF----EGARPIIKVQEGCNSFCSFCIIPFARGKVRSAKI 181 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++V++ + L+D G EI L G ++ + G D ++ T DLL +L +I+ L R+R ++ Sbjct: 182 DEIVNQVKILVDKGFKEIVLTGTQLSQY---GYDHKEGTLYDLLKNLVKIENLYRIRLSS 238 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++ D I + + P+ HL +QS D++L+ M R +T EY + +++I S RP Sbjct: 239 MGINELDDKFIDFLTSEEKIAPHFHLSIQSADDKVLRDMKRNYTVKEYMEKVEKIISKRP 298 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + AI +D I GFP E F T+ ++ I +A F YS R GT ++V K Sbjct: 299 ETAIGTDIITGFPTEDKTAFLNTVKTINNIPFAYIHVFTYSQRDGTTAVKFGDKVLPEEK 358 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447 ER L++ ++ F + + +E LI ++ K+ ++ + + K I Sbjct: 359 KERTRILREISYQKNYEFRKRFINKDLEFLIISE-RDDYKIAVTGNYIHAKIKTEK--AI 415 Query: 448 GDIIKVRITDV 458 IIK +T++ Sbjct: 416 NTIIKANLTEI 426 >gi|312886291|ref|ZP_07745904.1| MiaB-like tRNA modifying enzyme [Mucilaginibacter paludis DSM 18603] gi|311301236|gb|EFQ78292.1| MiaB-like tRNA modifying enzyme [Mucilaginibacter paludis DSM 18603] Length = 440 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 113/391 (28%), Positives = 206/391 (52%), Gaps = 14/391 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + +F G++ V+ D D+ V+NTC + + A +K + + Sbjct: 9 TLGCKLNYSETSTIGRLFNKAGFDTVDFADTPDVFVINTCSVTDNADKKC-------KKI 61 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K + V + GC AQ + +EI P V++V+G + + E + + + Sbjct: 62 VKEALKISPNAYVTIVGCYAQLKPQEIAE-IPGVDMVLGAAEKFNIVEHIADLTKKPKTL 120 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + V + + ++ G NR R FL +Q+GCD CTFC +P RG S ++ V Sbjct: 121 VYNQPVSEANQFIASYSFGDNRTR---TFLKVQDGCDYSCTFCTIPLARGASRSDTVESV 177 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRYTTSH 269 +++AR + +GV EI L G N+ + + DG++ F DL+ +L E+ G+ R+R ++ Sbjct: 178 LEQARAIAASGVKEIVLTGVNIGDYGIR--DGKREHKFFDLVKALDEVDGIDRIRISSIE 235 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P ++D +I+ P+ H+P+QSGS++IL M RR+ Y + +I+ + PD Sbjct: 236 PNLLTDEIIEFVAVSKRFAPHFHIPLQSGSNKILSLMRRRYKRELYADRVAKIKQLMPDC 295 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 I D IVGFPGET +DF T + ++++ + F YS R T + M V + ++E Sbjct: 296 CIGVDVIVGFPGETREDFVETYNFLNELNISYLHVFTYSERENTLAAEMTGTVPGSTRSE 355 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 R L +++ +F ++ +G+ +E+L E+ Sbjct: 356 RSKMLHILSDKKRRAFYESQLGKHVEILFER 386 >gi|167630431|ref|YP_001680930.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1] gi|238066299|sp|B0TIH8|RIMO_HELMI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|167593171|gb|ABZ84919.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1] Length = 460 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 134/462 (29%), Positives = 222/462 (48%), Gaps = 32/462 (6%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 + I+ + + S GC N D+ M + GYE +DA ++++NTC A E+ Sbjct: 13 EAILTMKIHITSLGCAKNRVDTEVMMGLLREAGYELTQREEDAHVLLVNTCGFILPAKEE 72 Query: 80 VYSFLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 + L+ +R KE G ++VAGC+ Q E+ P V+ GP R+ Sbjct: 73 SIQTI-----LELARYKETGRCRALLVAGCLPQGYAGELAAELPEVDAFFGPGDVPRVTS 127 Query: 139 LLERARFGKRVVDT---DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 ++ GKR ++ D+ + R+ Y A++ I +GCD C +C + Sbjct: 128 IVAEVLRGKRSLEVGKPDFLYDHTMPRVLSTPFHY-------AYVKIADGCDNRCGYCAI 180 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYS 253 P RG SRS +V+E R L+D G+ E L+ Q+ + G+D GE + L+ Sbjct: 181 PNLRGRFRSRSEESIVEETRSLVDRGIQEALLIAQDTTCY---GVDRYGE-FRLAQLIGK 236 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 L+ I GL +R +P + LI+A + Y+ LP+Q D +L+SMNR Sbjct: 237 LASIDGLRWIRLMYCYPSHFTPELIEAMAAEPKVCRYVDLPLQHADDELLRSMNRHAGVD 296 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 E R++I +R P +AI + FIVG PGET++ F+ +D + ++ + + F YS T Sbjct: 297 EIRRLIRTLRERLPGLAIRTSFIVGLPGETEEKFQRLLDFLAEMRFDRVGIFTYSREENT 356 Query: 374 PGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKH---GKEKGK 427 P + +QV E VK ER + LQ+++ +S +G+ +EVL+E+ G +G+ Sbjct: 357 PAGKLADQVPEEVKEERYHRAMVLQQEI---SLSIQQEWIGKTLEVLVEEEVAPGLYRGR 413 Query: 428 LVGRSPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +P + + ++ IG+ VRIT L GE + Sbjct: 414 SEREAPEVDGHIEFKGRHRMIGEWANVRITAASHYDLMGEAI 455 >gi|126663485|ref|ZP_01734482.1| possible 2-methylthioadenine synthetase [Flavobacteria bacterium BAL38] gi|126624433|gb|EAZ95124.1| possible 2-methylthioadenine synthetase [Flavobacteria bacterium BAL38] Length = 447 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 126/420 (30%), Positives = 210/420 (50%), Gaps = 25/420 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F ++G+ERV + AD+ V+NTC + + A ++ + + L Sbjct: 11 TLGCKLNFSETSTIARDFQNEGFERVEFEEIADIYVINTCSVTDNADKQFKQIVKKAMKL 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + V GC AQ + EE L V++V+G +++ + + K + Sbjct: 71 NDK-------AFVAAVGCYAQLKPEE-LAAVDGVDLVLGATEKFKITDYIND--LSKNDM 120 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +S E E G Y+ AFL +Q+GCD CT+C +P RGI S ++ V Sbjct: 121 GEVHSCE--IEEADFYVGSYSFGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDTMEGV 178 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLRYTT 267 + A+++ G+ EI L G N+ + GKG G K TF DL+ L +++G+ RLR ++ Sbjct: 179 LKNAKEISAKGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLDLVTELDKVEGIERLRISS 237 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P + + I+ +P+ H+P+QSGS+ ILK M RR+ Y +++IR V P Sbjct: 238 IEPNLLKNETIELVSKSRAFVPHFHIPLQSGSNDILKKMKRRYLRELYVDRVNKIREVMP 297 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 I D IVGFPGETD+ F T ++ + + F YS R T + M V NV+ Sbjct: 298 HACIGVDVIVGFPGETDEHFLETYHFLNDLDISYLHVFTYSERDNTEAAEMEGVVPANVR 357 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPWLQSVV 439 ++R L+ +++ +F ++ +G VL E KE G + G ++PW +V Sbjct: 358 SKRSKMLRGLSVKKRRAFYESQIGTKRTVLFENENKE-GYIHGFTENYVKVKTPWNPELV 416 >gi|326203617|ref|ZP_08193481.1| MiaB-like tRNA modifying enzyme YliG [Clostridium papyrosolvens DSM 2782] gi|325986437|gb|EGD47269.1| MiaB-like tRNA modifying enzyme YliG [Clostridium papyrosolvens DSM 2782] Length = 446 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 126/462 (27%), Positives = 234/462 (50%), Gaps = 37/462 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ + S GC N+ DS M M YE VN+ +DA+++++NTC E A ++ + Sbjct: 1 MKKKIGIVSLGCPKNLVDSEIMLGMLSHADYEIVNNKEDANVLIVNTCGFIESAQQESIN 60 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + + + K + +++V GC+A+ E+IL + P V+ V+G Y + E++ Sbjct: 61 TILEMADEKGHNCE-----VLIVTGCMAERYKEKILEQIPEVDAVLGTGNYKEIAEVINL 115 Query: 143 ARFGKRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 A G++ V +TDY ++ ++ + +L I EGCD CT+C++P Sbjct: 116 AYMGEKTVAYGKLDETDY-----LDQERVISSAKQ-----SVYLKISEGCDNRCTYCIIP 165 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 + RG SR + +V EA L G EI ++ Q+ + G L G+K +L+ ++S+ Sbjct: 166 FLRGKYRSRKMESLVREAELLAQKGAKEIIIVAQDSTRY-GIDLYGKK-MLPELIRNISD 223 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I G+ +R +P +++D LI+ + YL +P+Q SDR+LK M RR T + + Sbjct: 224 INGIEWIRLLYCYPEEINDELIEEIAKNPKVCKYLDIPIQHASDRVLKQMGRRGTICDIK 283 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 Q+++++R I I + IVGFPGET++DF + + + + F YS GT + Sbjct: 284 QVLNKLREKVSGITIRTSLIVGFPGETEEDFEELIAFLKEYRLDRVGVFTYSKEDGTAAA 343 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVS----FNDACVGQIIEVLIEKHGKEK----GKL 428 + Q+ + +K R QKK+ E Q + N G++ + +++ + G+ Sbjct: 344 KLKGQIPKRIKLNR----QKKILELQNTISREINQDRNGKVFKTIVDGIADDGIFYYGRT 399 Query: 429 VGRSPWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGELV 468 +P + V+ +++ +IG V+I + + L GE++ Sbjct: 400 YAEAPEIDGVIYFTSAEELSIGSFTNVKILNSEDYDLIGEVI 441 >gi|222099771|ref|YP_002534339.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga neapolitana DSM 4359] gi|221572161|gb|ACM22973.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga neapolitana DSM 4359] Length = 430 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 137/449 (30%), Positives = 230/449 (51%), Gaps = 38/449 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA----EKVYSFL 84 +K GC N D + + +G+E V+++++AD++VL+TC E A +++ SF+ Sbjct: 5 IKVLGCPKNEADCEILAGLLKERGHEIVHNVEEADVVVLDTCAFIEDAKKESIDEILSFV 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 KE +VV GC+ Q E+ + P V+ +G ++ LLE Sbjct: 65 ---------EAKEDYGYRLVVKGCLVQRYYRELKKEIPEVDQWIGVVAPEKIVSLLENGE 115 Query: 145 -FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + +T YS +R+++ + Y A++ I +GCD+ CTFC +P +G Sbjct: 116 DLVPQRPETVYSYR---KRINLEEKPY-------AYVKISDGCDRKCTFCSIPSFKGNLK 165 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SRS+ +V E L+ G EI L+ Q+ ++ G+ L G K SDLL L+ +KG + Sbjct: 166 SRSVEDIVHEVEDLLAEGKKEIILVAQDTTSY-GEDLYG-KQALSDLLRRLNSLKGDFWI 223 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R HP ++D +I L+ ++ Y +PVQ GSDRIL M R ++ E + ++ RIR Sbjct: 224 RVMYLHPDHLTDEIIDTILKLEKVVNYFDVPVQHGSDRILTLMGRIRSSKELKNMLLRIR 283 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PD + + IVGFPGET++DF V+++ + + F YS GT S++ +VD Sbjct: 284 DKAPDAVLRTSVIVGFPGETEEDFEELKRFVEEVKFDKLGVFVYSDEEGTVASSLKNKVD 343 Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436 + E LL LQ ++ +++ D VG+ ++ L+E G+E G L+GR+ P + Sbjct: 344 PETARRRQEELLLLQAEISYERL---DRFVGKSMKALVE--GRENGYLIGRTFTEAPEVD 398 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYG 465 VV +GD ++V I + ++G Sbjct: 399 GVVFIKGRGEMGDFLEVTIEEHDEYDMWG 427 >gi|89898289|ref|YP_515399.1| hypothetical protein CF0482 [Chlamydophila felis Fe/C-56] gi|123722311|sp|Q254N4|RIMO_CHLFF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|89331661|dbj|BAE81254.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56] Length = 460 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 116/416 (27%), Positives = 205/416 (49%), Gaps = 20/416 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M + GYE S+++AD ++LNTC + A ++ +L RI Sbjct: 22 SLGCSRNLVDTEVMLGILLKSGYEATESLEEADYLILNTCAFLKAARDESTDYLQRIIKA 81 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K K +++ GC+ EE+ P ++ V+G + +E +G+++ Sbjct: 82 KKETAK------IILTGCMVSKHKEELKPLLPHIHYVLGSGDVEHILSAIESKEYGEKIS 135 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y + R Y A+L I EGC K C FC++P +G S+ L Q+ Sbjct: 136 SKSYLEMGEIPRKLSTPKHY-------AYLKIAEGCRKRCAFCIIPTIKGALRSKPLDQI 188 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLRYTTSH 269 + E R L+ GV EI L+ Q++ + GK + K +L + + G +R + Sbjct: 189 IKEFRLLLKMGVKEIILIAQDLGDY-GKDFSADRKSCLDKVLKEMLKEPGDYWIRMLYLY 247 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P ++ D +I L+PY+ +P+Q ++R+LK M R + + ++ ++R+ P I Sbjct: 248 PDEVDDTIIDLMESDHRLLPYVDIPLQHINNRVLKKMLRTTSKEQILDLLTKLRTRIPHI 307 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 I S FIVGFPGETDD+F+ +D V + F YS G+ ++M +QV ++VK++ Sbjct: 308 YIRSSFIVGFPGETDDEFQDLVDFVREGWIDNLGIFSYSQEEGSVAADMPDQVSQSVKSK 367 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQSVVL 440 RL L + ++ N VGQ++E +I+ + + + G++P + ++ Sbjct: 368 RLKILSQAQKQNVEKHNQKLVGQVVEAVIDGYHPDSELLLTARFYGQAPEVDPCII 423 >gi|86142709|ref|ZP_01061148.1| hypothetical protein MED217_07336 [Leeuwenhoekiella blandensis MED217] gi|85830741|gb|EAQ49199.1| hypothetical protein MED217_07336 [Leeuwenhoekiella blandensis MED217] Length = 447 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 128/431 (29%), Positives = 215/431 (49%), Gaps = 25/431 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F ++G++RV+ D AD+ V+NTC + E A + R + + Sbjct: 12 TLGCKLNFSETATISRSFENEGFDRVDFKDTADIYVINTCSVTENADK-------RFKTI 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K D V GC AQ + EE L V++V+G +++ + L K + Sbjct: 65 VKQAQKVNPDAFVAAVGCYAQLKPEE-LADVDGVDLVLGATEKFKITDYLND--LSKNDM 121 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +S E E G Y+ AFL +Q+GCD CT+C +P RGI S +L V Sbjct: 122 GEVHSCE--IEDADFYVGSYSVGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDTLQNV 179 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLRYTT 267 + AR++ G+ EI L G N+ + GKG G K TF DL+ +L +++G+ RLR ++ Sbjct: 180 LKNAREISAQGIREIVLTGVNIGDY-GKGEFGNKKHEHTFLDLVKALDQVEGIERLRISS 238 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P + + I+ +P+ H+P+QSG++ +L M RR+ Y + I+ + P Sbjct: 239 IEPNLLKNETIEVVAASRAFVPHFHIPLQSGNNEMLGKMRRRYRRELYVDRVAAIKKLMP 298 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D I D IVGFPGETD+ F T + ++++ + F YS R T ++M V + Sbjct: 299 DACIGVDVIVGFPGETDEHFLDTYNFLNELDISYLHVFTYSERDNTLAADMDGAVPLKRR 358 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPWLQSVV 439 +R L+ +++ +F ++ +G VL E K KG + G ++PW S++ Sbjct: 359 KKRSKMLRGLSAKKRRAFYESQLGTQRTVLFEGENK-KGYIHGFTENYVKVKTPWDPSLI 417 Query: 440 LNSKNHNIGDI 450 + + DI Sbjct: 418 NTTHTIELTDI 428 >gi|307106392|gb|EFN54638.1| hypothetical protein CHLNCDRAFT_135184 [Chlorella variabilis] Length = 635 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 142/496 (28%), Positives = 227/496 (45%), Gaps = 105/496 (21%) Query: 11 AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70 A + + D P+ FV++YGCQMNV DS +VL Sbjct: 90 APSPAALPDAASPPRTAFVETYGCQMNVNDSE----------------------VVL--- 124 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVG 129 ++ LG +++LK E VV V GC+A+ E +L R +V++V G Sbjct: 125 --------AIWQRLGYLKSLKRRPGAERRPPPVVGVLGCMAERLKERLLEREKLVDIVAG 176 Query: 130 PQTYYRLPELLE-----------------RARFGKRV--VDTDYSVEDKFERLSIVDGGY 170 P Y LP L++ R G R ++ S ++ + ++ + Sbjct: 177 PDAYRDLPRLIDIVQGGAGGPGGVLGSGGLPRPGGRAAAMNVQLSADETYADITPL---- 232 Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 + ++AF++I GC+ C FC+VPYTRG E SR L +V R L + GV E+TLLGQ Sbjct: 233 RQPDALSAFVSIMRGCNNMCAFCIVPYTRGRERSRPLQSIV---RMLSEQGVREVTLLGQ 289 Query: 231 NVNAWRG----------------------KGLDGE---------------------KCTF 247 NVN++ + GE +F Sbjct: 290 NVNSYADFSNNHDDSSSGVGSSSRGGGVEEASAGEDPFGAVYARGFRSAYRPRRQGAASF 349 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 ++LL +++ + +R+R+T+ HP+D SD +++ + LH+P QSGS +L+ M Sbjct: 350 AELLDAVAGVDPEMRIRFTSPHPKDFSDDVLRVIASRPNVCKQLHMPAQSGSSAVLERMR 409 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R +T Y ++ +R+ P++A+S+D I GF GE ++D A++DLV GY QAF F Y Sbjct: 410 RGYTREAYDALVRHVRNAIPEVALSTDMIAGFCGEGEEDHAASLDLVRSAGYDQAFLFAY 469 Query: 368 SPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEK 425 S R T + + + V E VK RL L R++ A +G+ VL+E + + Sbjct: 470 SMRGKTHAARHYQDDVPEEVKQRRLAELIAAYRQELYRRAAAELGRRHLVLVEGPSRRSE 529 Query: 426 GKLVGRSPWLQSVVLN 441 L GR+ + VV + Sbjct: 530 SALTGRTDTFKRVVFD 545 >gi|322418994|ref|YP_004198217.1| MiaB-like tRNA modifying enzyme [Geobacter sp. M18] gi|320125381|gb|ADW12941.1| MiaB-like tRNA modifying enzyme [Geobacter sp. M18] Length = 432 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 132/447 (29%), Positives = 212/447 (47%), Gaps = 21/447 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSF 83 +R + + GC++N ++S M + GY V + AD+ V+N+C + K AE Sbjct: 3 KRIAITTLGCKINQFESAAMTEALEQDGYSFVPFSETADIYVINSCTVTAKTDAESRRLI 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 R +R VVV GC AQ G+E+L+ P VN+++G + ++ Sbjct: 63 RRAARLNPEAR--------VVVTGCYAQMAGDELLKL-PGVNLILGNSEKKDIVGFIKGL 113 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + V +D S + ER + + + AFL +Q GCD C +C+VPY RG Sbjct: 114 GDEPQAVVSDISKQRSGERTQLESFAEHTR----AFLQVQNGCDARCAYCIVPYARGASR 169 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR- 262 S + + +D G EI L G ++ A+ GLD + T L L+E +G VR Sbjct: 170 SVAPQEALDGMAAFAAKGFQEIVLTGIHLGAY---GLDLDPPTDLLGLMKLAEGQGSVRR 226 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR + P ++ +I ++ P+LHLP+QSGSD +L MNR + + ++ + Sbjct: 227 LRIGSVEPTEVPAEMISFMAGSRIVCPHLHLPLQSGSDGVLSRMNRGYDTALFGDVVRAL 286 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 +V PD+ I SD I GFPGETD +F + ++ + A F +S R GTP + M QV Sbjct: 287 VAVMPDVCIGSDVIAGFPGETDREFEEALSFIESLPLAYLHVFPFSQRPGTPAATMAAQV 346 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 V ER L+ +++ + VG+ + VL++ K++G G S V++ Sbjct: 347 QPRVIKERAEALRVLSEKKKAQYAARFVGRELPVLVQ---KDEGGRKGLSRNYLPVLIEG 403 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 + + V IT + L G L Sbjct: 404 CEGLVNQEVSVLITGTRGGELLGRLAA 430 >gi|126695455|ref|YP_001090341.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9301] gi|238066596|sp|A3PAG5|RIMO_PROM0 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|126542498|gb|ABO16740.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9301] Length = 454 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 130/455 (28%), Positives = 237/455 (52%), Gaps = 44/455 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC+ N+ D+ M+ + +GYE ++++DA+++V+NTC E A E+ + +I N Sbjct: 22 GCEKNLVDTEHMQGLLHKEGYEVDSNINDANVVVVNTCSFIETAREES---IRKILEYTN 78 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 +G + V+VAGC+AQ +E+++ P + +VG Y ++ ++L+R G+ V + Sbjct: 79 ----QGKE--VIVAGCMAQHFKDELIKEIPEIKGLVGTGDYQKIAKVLDRVEKGEIVNEV 132 Query: 153 ----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ +++ R VD K A+L I EGC+ C FC++P RG + SR++ Sbjct: 133 SKIPEFIADEEMPRF--VD-----KNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRSRTIE 185 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTT 267 ++ EA+ L G+ EI L+ Q + G+ + G K + + LL LS++ +R+ Y Sbjct: 186 SILSEAKSLAKKGIQEIILISQ-ITTNYGQDIYG-KPSLAKLLNELSKVPIPWIRIHY-- 241 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++D +I+A D ++PY LP+Q +LKSMNR A I+++IR P Sbjct: 242 AYPTGLTDEVIRAFKDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIREEIP 301 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + + IVGFPGE + F + +D+ + F +SP GT ++ +V V Sbjct: 302 SAVLRTSLIVGFPGEKKEHFEHLLQFLDRHKFDHVGVFIFSPEEGTAAFHLPNKVSPEVA 361 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL 440 R ++ +Q+ + ++ N VG +++++E+ + +L+GRS P + V+ Sbjct: 362 EARKDNVISVQQNISREK---NQIYVGSKMKIMVEQIS-DNNELIGRSYNFAPEIDGTVI 417 Query: 441 NS-------KNHNIGDIIKVRITDVKISTLYGELV 468 S KN+ IG ++ I+ LYGE + Sbjct: 418 LSVKEKIDLKNY-IGKFVEANISFADEYDLYGETI 451 >gi|157412457|ref|YP_001483323.1| Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9215] gi|238066594|sp|A8G2A6|RIMO_PROM2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|157387032|gb|ABV49737.1| possible Fe-S oxidoreductase [Prochlorococcus marinus str. MIT 9215] Length = 454 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 127/457 (27%), Positives = 237/457 (51%), Gaps = 52/457 (11%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI----REKAAEKVYSFLGRIR 88 GC+ N+ D+ M+ + +GYE +++++A+++V+NTC RE++ K+ + + + Sbjct: 22 GCEKNLVDTEHMQGLLDKEGYEVDSNINEANVVVVNTCSFIQTAREESIRKILEYTNQGK 81 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 V+VAGC+AQ +E+++ P + ++G Y ++ ++L+R G+ Sbjct: 82 E-------------VIVAGCMAQHFKDELIKEIPEIKGLIGTGDYQKIAKVLDRVEKGEI 128 Query: 149 VVDT----DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V + ++ +++ R VD K A+L I EGC+ C FC++P RG + S Sbjct: 129 VNEVSKIPEFIADEEIPRF--VD-----KNKFVAYLRIAEGCNYNCAFCIIPKLRGPQRS 181 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263 R++ +V EA+ L G+ EI L+ Q + G+ + G K + + LL LS++ +R+ Sbjct: 182 RTIESIVSEAKSLAKQGIQEIILISQ-ITTNYGQDIYG-KPSLAKLLNELSKVPIPWIRI 239 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P ++D +I+A D ++PY LP+Q +LKSMNR A I+++IR Sbjct: 240 HY--AYPTGLTDQVIRAFKDSKNIVPYFDLPLQHSHPDVLKSMNRPWQASLNESILEKIR 297 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P + + IVGFPGE + F ++ +D+ + F +SP +GT ++ +V Sbjct: 298 EEIPSAVLRTSLIVGFPGEKKEHFEHLLEFLDRHKFDHVGVFIFSPEVGTAAFDLPNKVS 357 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436 V R ++ +Q+ + + + N + VG +++L+EK + +L+GRS P + Sbjct: 358 PEVAEARKDNVISVQQNISKDK---NQSYVGSKMKILVEKIS-DNNELIGRSYNFAPEID 413 Query: 437 SVVLNS-------KNHNIGDIIKVRITDVKISTLYGE 466 V+ S KN++ G ++ I+ LYGE Sbjct: 414 GTVILSVKDKIDLKNYS-GKFVEANISFADEYDLYGE 449 >gi|325109974|ref|YP_004271042.1| 30S ribosomal protein S12P methylthiotransferase [Planctomyces brasiliensis DSM 5305] gi|324970242|gb|ADY61020.1| SSU ribosomal protein S12P methylthiotransferase [Planctomyces brasiliensis DSM 5305] Length = 474 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 127/449 (28%), Positives = 222/449 (49%), Gaps = 21/449 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q FV S GC N+ DS +M GY + +D +++NTC + + ++ + Sbjct: 27 QYAFV-SLGCPKNLVDSEKMLGTLAVDGYSLTSEPAGSDFVIVNTCGFIDSSRQESIETI 85 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + LK +G V+VAGC+ + G E+ R P ++ +VG + R E ++ Sbjct: 86 EEMLELKRQGKTKG----VIVAGCLPERIGPELRERLPEIDHIVG--VFGRD----EISK 135 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRG 200 R+V D F I + +T A+L I EGC++ CTFC +P RG Sbjct: 136 VADRLVGHINEQRDLFRPAPIRALDDRARLRITPQHFAYLKISEGCNRTCTFCSIPKMRG 195 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 +++ + VV+EAR+L +GV E+ L+ Q+ + G L GE +DLL L +++G+ Sbjct: 196 KHVTKPIEAVVEEARELAADGVKELILVAQDTTYY-GMDLYGE-VRLTDLLGELEKVEGI 253 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R +P + +D LI + ++PYL +P+Q + R+LK M RR + ++++ Sbjct: 254 DWIRLMYLYPINFTDALIDRIANSSKILPYLDMPLQHINSRVLKRMQRRINQEKTYELVE 313 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R P++ + + F+VGFPGETD+ F + V + + F YS GTP + Sbjct: 314 KLRERVPNLVLRTTFVVGFPGETDEQFEELREFVKATRFQRMGVFPYSLEPGTPAEKLDG 373 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQ- 436 + E VK +R+ L +E F ++ VG ++VLI++H + G+ +P + Sbjct: 374 HLPEEVKQQRVDTLMADQQEIAFEFGESLVGYELDVLIDEHVGDNVWMGRTFADAPEIDG 433 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYG 465 +V + + +G+ V I + L G Sbjct: 434 AVYVQGEGLTVGEFTPVEIVGTQDYDLIG 462 >gi|319783553|ref|YP_004143029.1| MiaB-like tRNA modifying enzyme YliG [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169441|gb|ADV12979.1| MiaB-like tRNA modifying enzyme YliG [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 437 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 225/465 (48%), Gaps = 49/465 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE D ADL+V+NTC + A ++ + Sbjct: 3 APRVSFV-SLGCPKALVDSERIITRLRAEGYEIARKHDGADLVVVNTCGFLDSARDESLN 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G S + E G V+V GC+ AE + I + P V + GPQ Y + + Sbjct: 62 AIG-------SALSENGR--VIVTGCLG-AEPDVIREKHPNVLAITGPQAYESVMAAVHE 111 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D + L G R A+L I EGC+ CTFC++P RG Sbjct: 112 AA---------PPSHDPYIDLLPPQGVKLTPRHY-AYLKISEGCNNRCTFCIIPALRGDL 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251 +SR + V+ EA KL GV E+ ++ Q+ +A+ G+D + + F DL Sbjct: 162 VSRPAADVLREAEKLAKAGVKELLVISQDTSAY---GIDIKYQTSMFGDREVRAKFLDLS 218 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L ++ VR+ Y +P + A G + +PYL +P Q S ++LK+M R Sbjct: 219 EELGKLGIWVRMHYVYPYPHVADVIPLMAEGKI---LPYLDIPFQHASPQVLKNMRRPAH 275 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + + I R V PD+AI S FIVGFPGETDDDF +D +D+ +A FKY P Sbjct: 276 GEKTLERIRGWREVCPDLAIRSTFIVGFPGETDDDFEMLLDWLDEAKIDRAGCFKYEPVR 335 Query: 372 GTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHG-KEK 425 G +++ LEQV + +K R + Q+K+ Q++ VG+ + VLI E HG K Sbjct: 336 GARSNDLGLEQVPQEIKEARWHRFMQRQQKISATQLARK---VGKRLPVLIDEAHGTSAK 392 Query: 426 GKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 G+ +P + SV + S+ GDI+ V+I LYG V Sbjct: 393 GRTKYDAPEIDGSVHIQSRRPLRQGDIVTVKIDRADAYDLYGSAV 437 >gi|219871680|ref|YP_002476055.1| ribosomal protein S12 methylthiotransferase [Haemophilus parasuis SH0165] gi|219691884|gb|ACL33107.1| MiaB-like tRNA modifying enzyme YliG [Haemophilus parasuis SH0165] Length = 443 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 141/464 (30%), Positives = 223/464 (48%), Gaps = 47/464 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P FV S GC N+ DS R+ S GY ++S + ADL+++NTC + A ++ Sbjct: 4 APNIGFV-SLGCPKNLVDSERILTELRSDGYNIISSYEGADLVIVNTCGFIDSAEQESLE 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G V+V GC+ E + I P V + GP +Y + Sbjct: 63 SIGEALEANGK---------VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV-----M 107 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 K V +Y+ +S+V G A+L I EGCD CTFC++P RG Sbjct: 108 KHVHKYVPKPEYN-----PYVSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRGD 162 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR--GKGLDGEKCTFSD---------- 249 SR + QV+DEA++L+D+GV E+ ++ Q+ +A+ K +G K F + Sbjct: 163 LDSRPIVQVLDEAKRLVDSGVKELLIVSQDTSAYALDKKKEEGTKTVFWNGMPIKNNLIT 222 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 L L + +RL Y +P + A G L +PYL +P+Q S +ILK+M R Sbjct: 223 LCEQLGSMGVWIRLHYVYPYPHVDDLIPLMAQGKL---LPYLDIPLQHASPKILKAMKRP 279 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + + I + R + PD+ + S FIVGFPGET++DF+ +D + + + FK+SP Sbjct: 280 GSIDRTLERIKKWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKFSP 339 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEK-- 425 G + M +QV E VK ER + +QQ+S + +G+ + V++++ KE Sbjct: 340 VDGAVATEMEDQVPEEVKEERFHRFMQ--LQQQISADRLQQKIGRPLSVIVDEIDKEGII 397 Query: 426 GKLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 G+ + +P + VV L+ +G II V IT L+G Sbjct: 398 GRSMADAPEIDGVVYVDNLSGAEVKVGQIISVTITQADEYDLWG 441 >gi|313676026|ref|YP_004054022.1| SSU ribosomal protein s12p methylthiotransferase [Marivirga tractuosa DSM 4126] gi|312942724|gb|ADR21914.1| SSU ribosomal protein S12P methylthiotransferase [Marivirga tractuosa DSM 4126] Length = 436 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 141/453 (31%), Positives = 220/453 (48%), Gaps = 44/453 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNS--MDDADLIVLNTCHIREKAAEKVYSFLGR 86 V + GC N+ DS M + + DD+++IV+NTC + A ++ + R Sbjct: 13 VVTLGCSKNLVDSEVMITQLRGNSIDVTHESDKDDSNIIVVNTCGFIDNAKQESIDTILR 72 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + K I E + V GC++Q +++ + P V+ G LP LL++ Sbjct: 73 YADAKEEGIIEK----LYVTGCLSQRYKDDLEKEIPQVDAFFGTM---ELPMLLKK---- 121 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + DY E ER++ + A++ I EGCD+ C+FC +P RG +SR Sbjct: 122 ---FNADYKHELVGERITTTANHF-------AYMKIAEGCDRPCSFCAIPIMRGKHVSRP 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRL 263 + ++V EA+ + NG EI L+ Q+ + GLD +K ++LL LS+++G+ +RL Sbjct: 172 IEELVKEAKNMARNGTKEILLIAQDSTYY---GLDIYKKRNLAELLRQLSDVEGIEWIRL 228 Query: 264 RYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 Y T P D+ D + + D + YL +P+Q GS ++LK M R T + +I R Sbjct: 229 HYAFPTGFPEDILDVM----AERDNICNYLDMPLQHGSTKMLKMMRRGTTHEKQAALIKR 284 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR P IA+ + I G PGET++DF+ MD V + + F YS T + + Sbjct: 285 IREKVPGIALRTTLIAGHPGETEEDFQEMMDFVRDTRFDRLGIFPYSHEENTHAYSFEDD 344 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437 V E +K ER + + + N +G+ +VLI+K KE G VGR SP + + Sbjct: 345 VPEEIKQERADAVMELQTQISHELNQEKIGKTFKVLIDK--KEGGFFVGRTEHDSPEVDN 402 Query: 438 VVLNSKNHN---IGDIIKVRITDVKISTLYGEL 467 VL N IGD + V ITD LYG L Sbjct: 403 EVLIDATENYVRIGDFVDVEITDATEFDLYGNL 435 >gi|168240726|ref|ZP_02665658.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448215|ref|YP_002044882.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|238066590|sp|B4TCV0|RIMO_SALHS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|194406519|gb|ACF66738.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339895|gb|EDZ26659.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 441 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ + + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 +++ QV E VK E R + LQ+++ +++ VG+ I V++++ +E G+ Sbjct: 343 GANDLPAQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ + L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441 >gi|189500918|ref|YP_001960388.1| MiaB-like tRNA modifying enzyme [Chlorobium phaeobacteroides BS1] gi|189496359|gb|ACE04907.1| MiaB-like tRNA modifying enzyme [Chlorobium phaeobacteroides BS1] Length = 451 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 142/458 (31%), Positives = 230/458 (50%), Gaps = 33/458 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R F + GC++N ++ + F G+E +S D DLI+++TC + +A +K Sbjct: 8 KRVFAITLGCKLNYAETSSILARFVKNGWEIADSDDIPDLIIIHTCAVTSQAGQKSRQ-- 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL----L 140 +IR + IK+ + V GC AQ + + V+V++G + Y +PE + Sbjct: 66 -QIRKM----IKKYPLSRIAVTGCYAQMYPDSV-ETIDGVHVILGVREKY-IPEKYIKDV 118 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTR 199 + A + R V + +++D S+++ R++G T AFL IQ+GCD C +C +P R Sbjct: 119 QEAVY--REVASPETIKDAEPAHSLIE---KREKGRTRAFLKIQDGCDYACAYCTIPLAR 173 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G S L V+ A +L + G EI L G N+ +R + TF DLL L + Sbjct: 174 GKSRSVPLETVLAGAVRLAEAGYREIVLTGVNIADYRSG-----RNTFVDLLLELESVD- 227 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R ++ P +SD LI +MP+ HLP+QSGSD IL +M RR++A YR+ + Sbjct: 228 VSRIRISSIEPDILSDRLIDTVASSSKIMPHFHLPLQSGSDAILAAMRRRYSATGYRERL 287 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP----- 374 + S P A+ +D I G+PGET+ DF AT L++ I A F S R GT Sbjct: 288 MKAVSAIPHCAVGADVITGYPGETESDFMATFRLLESIPAAYLHVFTCSLRPGTQLSGQV 347 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH---GKEKGKLVGR 431 S + + V V ER L ++Q + +G+ ++VL E+H EKG + G Sbjct: 348 SSGLRQSVSSAVSRERSRLLLDLAEKKQREYASCYLGKTLDVLFEEHRGVKGEKGTVSGY 407 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 SP V ++++ + I R V I + +L++ Sbjct: 408 SPNYLRVRCHTESSALATDIVGRERRVIIENMNEDLIL 445 >gi|13470719|ref|NP_102288.1| ribosomal protein S12 methylthiotransferase [Mesorhizobium loti MAFF303099] gi|75544062|sp|Q98MN9|RIMO_RHILO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|14021462|dbj|BAB48074.1| mlr0499 [Mesorhizobium loti MAFF303099] Length = 437 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 226/465 (48%), Gaps = 49/465 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE D ADL+V+NTC + A ++ + Sbjct: 3 APRVSFV-SLGCPKALVDSERIITRLRAEGYEIARKHDGADLVVVNTCGFLDSARDESLN 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G S + E G V+V GC+ AE + I + P V + GPQ Y + + Sbjct: 62 AIG-------SALSENGR--VIVTGCLG-AEPDVIREKHPNVLAITGPQAYESVMAAVHE 111 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D + L G R A+L I EGC+ CTFC++P RG Sbjct: 112 AA---------PPSHDPYIDLLPPQGVKLTPRHY-AYLKISEGCNNRCTFCIIPALRGDL 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251 +SR + V+ EA KL GV E+ ++ Q+ +A+ G+D + + F DL Sbjct: 162 VSRPAADVLREAEKLAKAGVKELLVISQDTSAY---GIDIKYQTSMFGDREVRAKFLDLS 218 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L ++ VR+ Y +P + A G + +PYL +P Q S ++LK+M R Sbjct: 219 EELGKLGIWVRMHYVYPYPHVADVIPLMAEGKI---LPYLDIPFQHASPQVLKNMRRPAH 275 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + + I R V PD+AI S FIVGFPGETD+DF +D +D+ +A FKY P Sbjct: 276 GEKTLERIRGWRDVCPDLAIRSTFIVGFPGETDEDFEMLLDWLDEAKIDRAGCFKYEPVK 335 Query: 372 GTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE-K 425 G +++ LEQV ++VK R + Q+K+ Q++ VG+ + VLI E HG K Sbjct: 336 GARSNDLGLEQVPQDVKEARWHRFMQRQQKISATQLAKK---VGKRLPVLIDEAHGTSAK 392 Query: 426 GKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 G+ +P + SV + S+ GDI+ V+I LYG V Sbjct: 393 GRTKYDAPEIDGSVHIQSRRPMRAGDIVTVKIERADAYDLYGSAV 437 >gi|261350294|ref|ZP_05975711.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii DSM 2374] gi|288861078|gb|EFC93376.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii DSM 2374] Length = 426 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 132/447 (29%), Positives = 232/447 (51%), Gaps = 28/447 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ +YGC N D+ M + + V+S + AD+I++NTC+++ KV + Sbjct: 2 KVYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKV---VY 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +I+ L+ ++ D V+V+GC+ + + E++ + +P + + GP + +++ Sbjct: 59 KIQQLQ----EKFPDKKVIVSGCMVEIDPEKLEKVAPDCSWI-GPHQLNKTADVVNGTYC 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G+ + + +S + K + DG + + I EGC CTFC + RG S Sbjct: 114 GRVIRECGFSKDSKVGVPKVSDGS------LIHIIQIAEGCLGACTFCCTRFARGPLNSY 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 + +V EA+K ID+G EI L Q+ A+ G D GEK SDL+ ++ + G R+R Sbjct: 168 PIKDIVAEAKKAIDDGAVEIQLTAQDTAAF---GYDSGEK--LSDLIKEVANLDGEFRVR 222 Query: 265 YTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 HP+D+ D +I A V ++HLPVQ+GS+++L M R HT +Y I+ + Sbjct: 223 VGMMHPKDILNNVDEIIDAIKHPKVYN-FIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSK 281 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +S PD+ ++ D IVG+P E+D+DF+ T+DL+ I + KY R G S+ L++ Sbjct: 282 FKSEIPDLTLAVDIIVGYPTESDEDFQLTVDLLRNIKPSLIHLSKYQHRKGAVSSS-LKE 340 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + V +R L + E N VG + ++ + G KG + ++ V+++ Sbjct: 341 IPHEVMKKRSRNLSRIKTEITEEENKELVGSVQNAVVVEVG-SKGGFIAKTDSYIPVIVD 399 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 N+GD IKV+ITD + L G++V Sbjct: 400 GV--NLGDFIKVKITDATATYLKGDVV 424 >gi|239627763|ref|ZP_04670794.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517909|gb|EEQ57775.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 460 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 128/437 (29%), Positives = 213/437 (48%), Gaps = 35/437 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + + GC++N Y++ M+ GY+ V + AD+ ++NTC + A K L R + Sbjct: 6 LHNLGCKVNAYEAEAMQQQLREHGYDIVPFDEKADVYIINTCSVTNVADRKSRQMLHRAK 65 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L + VV AGC Q + L+ V+V++G +L ++L+ G+ Sbjct: 66 KLNPESV-------VVAAGCYVQVAAD-TLKEDACVDVIIGNNKKGQLVQILDEYMEGRL 117 Query: 149 VVDT---------DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 D D D++E L + N + AF+ +Q+GC++FC++C++PY R Sbjct: 118 KEDEGPKSGIHVLDIGGTDEYEPLHVD----NIEDHTRAFIKVQDGCNQFCSYCIIPYAR 173 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--------EKCTFSDLL 251 G SR V E L+ G E+ L G +++++ + +G + DL+ Sbjct: 174 GRVRSRKPEDVEAEVEGLVARGYKEVVLTGIHLSSYGMEHREGGPVQGGNWDHGPLLDLI 233 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 + I GL R+R + PR +++ +A L P+ HL +QSG D LK MNR +T Sbjct: 234 GRIHRIPGLERIRLGSLEPRIITEEFAEALAGLAKFCPHFHLSLQSGCDATLKRMNRHYT 293 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 +Y + +R AI++D IVGFPGET ++F T + + K+ + + FKYS R Sbjct: 294 TEDYLRRCGILRKWFDHPAITTDVIVGFPGETQEEFEITREFLKKVHFYEMHVFKYSKRA 353 Query: 372 GTPGSNMLEQVDENVKAER---LLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKEKGK 427 GT + M +QV E VKA+R LL L+ + RE + F + V + E + E G++ Sbjct: 354 GTKAALMPDQVPEQVKAQRSDVLLELEASMSREYREHFAGSRVSVLFEDVAEVDGRK--Y 411 Query: 428 LVGRSPWLQSVVLNSKN 444 + G +P L K+ Sbjct: 412 ITGHTPQYVKAALPVKD 428 >gi|197263566|ref|ZP_03163640.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241821|gb|EDY24441.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 441 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 232/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ + + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V+++ +E G+ Sbjct: 343 GANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDDVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ + L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441 >gi|302874938|ref|YP_003843571.1| MiaB-like tRNA modifying enzyme YliG [Clostridium cellulovorans 743B] gi|307690444|ref|ZP_07632890.1| MiaB-like tRNA modifying enzyme YliG [Clostridium cellulovorans 743B] gi|302577795|gb|ADL51807.1| MiaB-like tRNA modifying enzyme YliG [Clostridium cellulovorans 743B] Length = 445 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 130/434 (29%), Positives = 215/434 (49%), Gaps = 21/434 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N DS + S+GYE N ++AD+I++NTC I E + + L + Sbjct: 10 SLGCDKNRIDSEIILSKL-SEGYEITNEENEADIIIVNTCGFIETSKQESINAILEMAKY 68 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 N K ++V GC+ Q G E+L P ++ ++G Y RL +E G + Sbjct: 69 KTNYSCK-----VLVATGCLTQRYGSELLELIPELDFILGVNDYDRLKSFIEEKISGNTI 123 Query: 150 -VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 +YS + E I+ G TA+L I EGC C++C++P RG SR+ Sbjct: 124 ETKINYSDSNINEGKRILTTGKQ-----TAYLRISEGCSNNCSYCIIPRIRGKYRSRTKE 178 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++ EA L+ +GV E+ L+ Q+ + G+D K +LL LS+IKG+ +R Sbjct: 179 SILKEAEDLVSSGVKELILVAQDTTRY---GIDIYNKKVLHELLRDLSKIKGIKWIRILY 235 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P ++ D LI + +++ YL +P+Q S+ IL++M RR ++ I ++ P Sbjct: 236 CYPEEIYDELIDEIANNEIICNYLDIPIQHISNNILRAMRRRTKKEIIKERISAMKERIP 295 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + + + IVGFPGET++DF+ D V +I + + FKYS T + + Q+ + +K Sbjct: 296 SLILRTSIIVGFPGETEEDFQELKDFVKEIKFDKLGVFKYSQEEDTDAAKLGNQIPDEIK 355 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVL--NSK 443 ER L +E N +G++ EV++E E G+ SP + V + Sbjct: 356 EEREKTLMLIQQEVSAEVNTNKIGRVYEVIVEDKDVEYYYGRSFETSPEIDGEVFIKPDR 415 Query: 444 NHNIGDIIKVRITD 457 + IG+ +KV+I D Sbjct: 416 DLKIGEFVKVKIVD 429 >gi|326335995|ref|ZP_08202171.1| 2-methylthioadenine synthetase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691792|gb|EGD33755.1| 2-methylthioadenine synthetase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 438 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 124/435 (28%), Positives = 218/435 (50%), Gaps = 34/435 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + GC++N ++ + F ++G+++V+ + AD+ V+NTC + E A + Sbjct: 3 KRVAFYTLGCKLNFAETATIARSFENEGFDKVDFEEPADIYVINTCSVTENADK------ 56 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-A 143 + + + +K + + GC AQ + E+++ V++V+G + + + + ++ Sbjct: 57 -QFKQIVRKALKHNENAFIAAIGCYAQLKPEDLIAVDG-VDLVLGAKEKFNITQYIDDLT 114 Query: 144 RFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + K +V D + D + G Y+ AFL IQ+GCD CT+C +P RGI Sbjct: 115 KLNKGQVHSCDINEADFYV------GSYSIGDRTRAFLKIQDGCDYKCTYCAIPMARGIS 168 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKG 259 S ++ ++ A+K+ +N + EI L G N+ + GKG G K TF +L+ +L ++G Sbjct: 169 RSDTIENILKNAKKISENNIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELIQALDTVEG 227 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + RLR ++ P + D I +P+ H+P+QSGS+ ILK M RR+ Y+ + Sbjct: 228 IERLRISSIEPNLLKDETIAFVAQSRSFVPHFHIPLQSGSNDILKKMKRRYLRELYQNRV 287 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +I+ PD I D IVGFPGETD+ F T ++++ + F YS R T M Sbjct: 288 AKIKEEMPDACIGVDVIVGFPGETDEHFLETYHFLNELDISYLHVFTYSERDNTEAVKME 347 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRS 432 V ++A+R L+ +++ F + +G +VL E HG + + ++ Sbjct: 348 GVVPSEIRAKRSRMLRGLSAKKRHYFYEKQLGTTHKVLFESDNKDGFMHGFTENYVKVKT 407 Query: 433 PW-------LQSVVL 440 PW LQ VVL Sbjct: 408 PWNPNLINTLQPVVL 422 >gi|257453136|ref|ZP_05618435.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_5R] gi|317059671|ref|ZP_07924156.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_5R] gi|313685347|gb|EFS22182.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_5R] Length = 436 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 133/446 (29%), Positives = 235/446 (52%), Gaps = 30/446 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + GC++N Y+S +++ +GYE V+ AD+ ++N+C + A K + L Sbjct: 5 KRVAFYTLGCKVNQYESESIKNQLLQKGYEEVDFESIADIYIVNSCTVTSIADRKTRNML 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + K+ V+V GC A+ +++L I + V+G + + + ++ Sbjct: 65 RRAK-------KQNPSGKVIVTGCYAETNRKDLLEMEEI-DFVIGNKDKSAVAKFVQEIH 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEI 203 +RV E F+ + + R +T A++ IQ+GC++FC++C +P+ RG Sbjct: 117 TQERVEKK----ESIFQEKEYQEYEFATFREMTRAYVKIQDGCNEFCSYCKIPFARGKSR 172 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +V++E KL+ G EI L+G N+ + GK L+G+ +F L+ + + L R+ Sbjct: 173 SRKQEKVLEEIDKLLMEGFQEIILIGINLGDY-GKDLEGD-ISFETLVQEILKRDLLKRV 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R + +P +++ I + +MP+LH+ +QS D +LK+M R+ Y I++ + Sbjct: 231 RIGSVYPDRITNSFISLFENPK-MMPHLHISLQSCDDTVLKNMKRK---YGRELILNSLL 286 Query: 324 SVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 S+R P + ++D IVGFPGET++ F+ T +++IG++ F YS R GT S M Sbjct: 287 SLREKVPSMEYTADIIVGFPGETEEMFQNTYASLEEIGFSHLHIFPYSDREGTLASRMKN 346 Query: 381 QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 ++ +K ER L LQKK+ E + A +G+ IEVLIE+ ++ G G SP Sbjct: 347 KLSPEIKKERVTILENLQKKVEEDR---RKAYLGKTIEVLIEE--EKDGYWWGYSPNYLR 401 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTL 463 V + N ++ +I+V I V+ L Sbjct: 402 VKIKGDNISVNSVIQVEIEKVEKGVL 427 >gi|330504051|ref|YP_004380920.1| ribosomal protein S12 methylthiotransferase [Pseudomonas mendocina NK-01] gi|328918337|gb|AEB59168.1| ribosomal protein S12 methylthiotransferase [Pseudomonas mendocina NK-01] Length = 440 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 149/473 (31%), Positives = 232/473 (49%), Gaps = 66/473 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC DS R+ +GYE V + DAD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKATVDSERILTQLRMEGYEIVPTYQDADVVVVNTCGFIDSAKAESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + E G V+V GC+ AE + I P V V GPQ Y Sbjct: 65 IGE-------ALAENGK--VIVTGCMGVAE-DSIRDVHPSVLAVTGPQQY---------- 104 Query: 144 RFGKRVVDTDYSV-EDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V K E ++D G A+L I EGC+ C+FC++P Sbjct: 105 ---EQVVNAVHEVIPPKTEHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHTCSFCIIPSM 161 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR + V+ EA +L+ GV E+ ++ Q+ +A W G+ + K Sbjct: 162 RGKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKLDFWNGQPV---KTRM 218 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 +L +LS + VRL Y +P + A G L+PYL +P Q S ++LKSM Sbjct: 219 LELCETLSSMGVWVRLHYVYPYPNVDDVIPLMAAGK---LLPYLDIPFQHASPKVLKSMK 275 Query: 308 RRHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 R A+E + + I + R + P++ I S FIVGFPGET++DF+ +D + + + F Sbjct: 276 R--PAFEDKTLARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCF 333 Query: 366 KYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN---DACVGQIIEVLIEKH 421 +YSP G P +++ LE V ++VK ER ++ + QQ + A +G ++VL+++ Sbjct: 334 QYSPVEGAPANDLGLEPVPDDVKQER---WERFMAHQQAISSARLQAKIGLEMDVLVDEV 390 Query: 422 GKEKGKLVGRSPWLQ------SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 E V RS W SV ++S + GD ++VRI D ++GELV Sbjct: 391 DGEGA--VARS-WADAPEIDGSVFIDSTSVKPGDKVRVRIVDADEYDMWGELV 440 >gi|120555643|ref|YP_959994.1| MiaB-like tRNA modifying enzyme YliG [Marinobacter aquaeolei VT8] gi|238066389|sp|A1U488|RIMO_MARAV RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|120325492|gb|ABM19807.1| SSU ribosomal protein S12P methylthiotransferase [Marinobacter aquaeolei VT8] Length = 455 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 139/455 (30%), Positives = 218/455 (47%), Gaps = 43/455 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ GY+ V + DDAD++V+NTC + A ++ +G Sbjct: 27 SLGCPKALVDSERILTQLRLDGYDVVPTYDDADIVVVNTCGFIDAAKQESLDAIGEA--- 83 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I E G V+V GC+ E + I P V V GP Y + + + ++ Sbjct: 84 ----ISENGK--VIVTGCMG-VEADRIRETHPGVLAVSGPHAYEEVVGAVHQYVPPRKE- 135 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L G R A+L I EGC+ CTFC++P RG +SR + V Sbjct: 136 ------HDPFLDLVPPQGVKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDV 188 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 +DEA++L+D GV EI ++ Q+ +A W+G+ + K L +L E+ Sbjct: 189 MDEAKRLVDAGVKEILVISQDTSAYGVDIKYRTGFWQGRPV---KTKMQALCEALGEMGV 245 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S R+LK+M R + + I Sbjct: 246 WVRLHYVYPYPHVDDIIPLMAEGKI---LPYLDIPFQHASPRVLKAMKRPAHDSKTLERI 302 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D +D+ + +F YS G P + + Sbjct: 303 RKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLDEAQLDRVGAFTYSAVEGAPANELE 362 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435 V E VK +RL K E + A +G+ I+VLI++ +E +GRS P + Sbjct: 363 GAVPEEVKEKRLARFMAKQAEISAARLQAKIGRTIDVLIDEVDEEGA--IGRSKADAPEI 420 Query: 436 QSVV-LNSKNHNI-GDIIKVRITDVKISTLYGELV 468 +V LN + + G I++ + L+ L+ Sbjct: 421 DGMVYLNDETELVPGQIVQAVVEHADEHDLWARLI 455 >gi|283784597|ref|YP_003364462.1| radical SAM superfamily protein [Citrobacter rodentium ICC168] gi|282948051|emb|CBG87615.1| radical SAM superfamily protein [Citrobacter rodentium ICC168] Length = 444 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 141/461 (30%), Positives = 233/461 (50%), Gaps = 43/461 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY V S DDAD++++NTC + A ++ Sbjct: 11 PKIGFV-SLGCPKNLVDSERILTELRTEGYNVVPSYDDADMVIVNTCGFIDSAVQESLEA 69 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + E G V+V GC+ E ++I P V + GP +Y ++ E + Sbjct: 70 IGEA-------LSENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLEHVHHY 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + F LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 120 --------VPKPQHNPF--LSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDL 169 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254 +SR + V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L L Sbjct: 170 VSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFYNGEPVKTSMVSLCEQL 229 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 S++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 230 SKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVDR 286 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 287 QLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAG 346 Query: 375 GSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429 + + +QV E VK E R + LQ+++ +++ VG+ I V++++ +E G+ + Sbjct: 347 ANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRSM 403 Query: 430 GRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 +P + +V LN + GD+I+V++ + L+G V Sbjct: 404 ADAPEIDGAVYLNGETRVKPGDVIRVKVENADEYDLWGSRV 444 >gi|260063207|ref|YP_003196287.1| hypothetical protein RB2501_00316 [Robiginitalea biformata HTCC2501] gi|88783301|gb|EAR14473.1| hypothetical protein RB2501_00316 [Robiginitalea biformata HTCC2501] Length = 476 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 134/442 (30%), Positives = 214/442 (48%), Gaps = 39/442 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + QG +V ADL V+NTC + + A + R R + Sbjct: 43 TLGCKLNFAETSTIARDLVEQGLRKVEFGQPADLYVINTCSVTDNADK-------RCRAV 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ + V V GC AQ + EEI P V++V+G + L L+ K + Sbjct: 96 VRQALRNNPEAFVAVVGCYAQLKPEEIAS-IPGVDLVLGATEKFNLTRYLDD--LSKNDM 152 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +S E + + G Y AFL +Q+GCD CT+C +P RGI S +L V Sbjct: 153 GEVHSCEIREADFYV--GSYAIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDTLENV 210 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLRYTT 267 ++ AR++ G+ EI L G N+ + GKG +G+K TF DL+ +L ++ G+ R+R ++ Sbjct: 211 LENAREISARGIREIVLTGVNIGDY-GKGENGDKRHKHTFLDLVRALDDVPGIERVRISS 269 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P + + I +P+ H+P+QSGS+ ILK M RR+ Y + RIR V P Sbjct: 270 IEPNLLKNETIDFVAGSRHFVPHFHIPLQSGSNSILKRMRRRYMRELYADRVARIREVMP 329 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDE 384 I D IVGFPGET+D F T + + ++ + F YS R TP + M + + Sbjct: 330 HACIGVDVIVGFPGETEDHFMETYNFLHELEVSYLHVFTYSERADTPAAKMDGAVPPAER 389 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPWLQ 436 N +++ L L K R +F + VL E K KG + G ++PW Sbjct: 390 NRRSKMLRSLSAKKRR---AFYQEQLDTEQTVLFEGENK-KGYIHGFTRNYVKVKAPWDP 445 Query: 437 SVVLNSKNHNIGDIIKVRITDV 458 ++ G ++VR+T++ Sbjct: 446 ALT--------GTTLRVRLTEI 459 >gi|149199462|ref|ZP_01876497.1| putative Fe-S oxidoreductase [Lentisphaera araneosa HTCC2155] gi|149137397|gb|EDM25815.1| putative Fe-S oxidoreductase [Lentisphaera araneosa HTCC2155] Length = 437 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 121/394 (30%), Positives = 202/394 (51%), Gaps = 22/394 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V + GC++N +S ME QG++ V+ ++++ ++NTC + +A R Sbjct: 14 VYTLGCRLNQSESSVMEQGLKEQGFDIVDFKGESNIAIVNTCTVTARADSDC-------R 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 N+ S I+ D V V GC +Q G + L V++++G Q + + ++ + K Sbjct: 67 NVIRSYIRRNPDAFVAVVGCYSQM-GYKTLAEIEGVDLIIGNQDKMSVLDYVKMGKNEKP 125 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ D V++ F +D A L IQ+GCD CTFC++P RG SR + Sbjct: 126 LIIRDRIVKEDF----TIDTMGQSDSKTRANLKIQDGCDFMCTFCIIPMARGRSRSRDME 181 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +++EAR LI G EI + G NV + +G TF D++ L+E++G+ R+R ++ Sbjct: 182 NLLEEARTLIGQGFREIVITGVNVATYDSQGR-----TFLDVIDRLNELEGIERIRISSI 236 Query: 269 HPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P + + + D + L+PYLH+P+QSGSD++LK M RR+ E+ I P Sbjct: 237 EPTTIPEKIFDYMADPNHALVPYLHIPLQSGSDKVLKIMKRRYERQEFLDFIKMASERVP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 D+ I +D +VG GE + +F T D + K + Y F+F S R GTP M E+V Sbjct: 297 DLCIGTDVMVGMCGEDEKEFEDTCDFLIKSPVNYFHVFTF--SERDGTPAVKMEEKVHPK 354 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 K+ R L+ +++ F + +G+ +VL E Sbjct: 355 EKSHRSSVLRAISERKRLKFYNDYIGREFDVLFE 388 >gi|110638137|ref|YP_678346.1| 2-methylthioadenine synthetase [Cytophaga hutchinsonii ATCC 33406] gi|110280818|gb|ABG59004.1| possible 2-methylthioadenine synthetase [Cytophaga hutchinsonii ATCC 33406] Length = 438 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 126/437 (28%), Positives = 219/437 (50%), Gaps = 26/437 (5%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N ++ + MF GYE+V + AD+ ++NTC + + A +K + + Sbjct: 10 GCKLNFSETSTIGRMFTENGYEKVEFHEKADVYIINTCSVTDHADKKC-------KKVVK 62 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 ++ V + GC AQ + EEI + P V+ V+G ++L ELL F K+ T Sbjct: 63 EALRYSPGAFVGIIGCYAQLKPEEIAQ-IPGVDAVLGASEKFKLFELL--GNFDKQDKAT 119 Query: 153 DYSVE-----DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y+ + D + S+ D R R FL +Q+GCD C+FC +P RG S ++ Sbjct: 120 IYTSDIAHATDYYCSYSVND----RTR---TFLKVQDGCDYSCSFCTIPLARGSSRSDTI 172 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYT 266 + +V A+++ V EI L G N+ + + G + T F DL+ L +++G+ R R + Sbjct: 173 ANIVKTAKEIAAKDVKEIVLTGVNIGDY--GIISGTRTTSFLDLIKELDKVEGIERFRIS 230 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P ++D +I +P+ H+P+QSG+D+ILK M RR+ Y + ++ I+ V Sbjct: 231 SIEPNLLTDEIISFVSTSRRFVPHFHIPLQSGNDKILKLMRRRYKRELYAERVEAIKKVM 290 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P I D IVGFPGETD+DF T + ++++ + F YS R T + M + Sbjct: 291 PHACIGVDVIVGFPGETDEDFNVTYNFLNELDISYLHVFSYSERANTLAATMKGKRPNRD 350 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 ++ER L+ +++ F + + + +VL E +E G + G + VV Sbjct: 351 RSERSTMLRTLSEKKRRFFYEQHITETADVLFEAE-EENGSMFGFTNNYVKVVTAYDPLW 409 Query: 447 IGDIIKVRITDVKISTL 463 + ++ KV++ + L Sbjct: 410 VNELKKVKLKTINTEGL 426 >gi|224371641|ref|YP_002605805.1| putative methylthioadenine synthetase [Desulfobacterium autotrophicum HRM2] gi|223694358|gb|ACN17641.1| putative methylthioadenine synthetase [Desulfobacterium autotrophicum HRM2] Length = 437 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 120/406 (29%), Positives = 206/406 (50%), Gaps = 18/406 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F++ + GC++N Y+S + + G+ RV +++ A + ++NTC + +AA + Sbjct: 4 FYITTLGCKVNQYESNGIATTLINNGWTRVEAVEKASVCIVNTCAVTARAAVQS------ 57 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 R S I+ V+V GC AQ E +++ + V+ VVG +++ E L G Sbjct: 58 -RQAIRSIIRTNPGAKVIVTGCHAQTE-PDLVGKIEHVHSVVGHGDKFKIAETLISPDQG 115 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRG--VTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +D+ E + L+ G G A+L IQ+GC+ FC++C+VPY RG S Sbjct: 116 ---IDSLPFPEKSYCTLTQFQGFEPAVTGNMTRAYLKIQDGCNAFCSYCIVPYARGRSRS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263 + +V+ L + G E+ L G + AW G D EK +F DLL ++ E + R+ Sbjct: 173 MPMDEVLAHLAYLHEKGYKEVILTGIHTGAW---GADFPEKRSFLDLLKTIVEKSPIHRV 229 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ P ++SD +I D ++ + H+P+QSG D ILK M R + +R+++ +I Sbjct: 230 RISSIEPIEISDEIIGLAADHAIICDHFHIPLQSGDDGILKRMGRPYDTGYFRELVLKIH 289 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P A+ D + GFPGE+D F T L+ + + F +SPR GTP + ++V Sbjct: 290 ETMPRAAMGIDVLQGFPGESDQAFERTHALLAGLPISYLHVFPFSPRKGTPAFDYPDRVA 349 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKL 428 + +R ++ RE++ +F +GQ +I E+ +E G L Sbjct: 350 PGILKQRCAAMRALGREKRRAFELGNIGQRFGAIIQEQRDRETGML 395 >gi|300716030|ref|YP_003740833.1| conserved uncharacterized protein [Erwinia billingiae Eb661] gi|299061866|emb|CAX58982.1| conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 442 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 140/466 (30%), Positives = 231/466 (49%), Gaps = 49/466 (10%) Query: 19 DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78 + + P+ FV S GC N+ DS R+ ++GYE V DDA+++++NTC + A + Sbjct: 4 NTTMAPRVGFV-SLGCPKNLVDSERILTELRTEGYEVVPRYDDAEIVIVNTCGFIDSAVQ 62 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 + +G N E G V+V GC+ E + I P V + GP +Y ++ Sbjct: 63 ESLEAIGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQV-- 110 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 L R+ + + LS+V + G A+L I EGC+ CTFC++P Sbjct: 111 LSHVHRYVPKPAHNPF--------LSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPS 162 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246 RG SR + V+DEA++L + GV E+ ++ Q+ +A W G + K + Sbjct: 163 MRGDLDSRPIGSVLDEAKRLAEAGVKELLVISQDTSAYGVDVKHRTGFWNGSPV---KTS 219 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 L L+++ VRL Y +P + A G L +PYL +P+Q S RILK M Sbjct: 220 MVSLCEQLAKLGVWVRLHYVYPYPHVDDVIPLMAEGKL---LPYLDIPLQHASPRILKLM 276 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + I R R + PD+ + S FIVGFPGET++DF+ +D + + + FK Sbjct: 277 KRPGAVERTLERIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFK 336 Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 YSP G + + + V E+VK E R + LQ+ + +++ VG+ I V+I++ + Sbjct: 337 YSPVEGATANQLPDPVPESVKEERYDRFMQLQQAISAERLQEK---VGREILVIIDEVDE 393 Query: 424 EK--GKLVGRSPWLQ-SVVLN-SKNHNIGDIIKVRITDVKISTLYG 465 E G+ + +P + +V LN K+ GD+++V++ + L+ Sbjct: 394 EGAIGRSMADAPEIDGAVYLNGEKSLKPGDVVRVKVDNADEYDLWA 439 >gi|328541783|ref|YP_004301892.1| methylase protein (RNA modification enzyme), MiaB family [polymorphum gilvum SL003B-26A1] gi|326411535|gb|ADZ68598.1| Putative methylase protein (RNA modification enzyme), MiaB family [Polymorphum gilvum SL003B-26A1] Length = 422 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 138/452 (30%), Positives = 222/452 (49%), Gaps = 50/452 (11%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M+ + G + D I++NTC + +A + + + R Sbjct: 5 VVTFGCRLNSYESEVMKREAEAAGLK--------DAILINTCAVTAEAVRQAGQAVRKAR 56 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK- 147 ++ D ++V GC AQ E + V++V+G E LERA +G+ Sbjct: 57 -------RDNPDATIIVTGCAAQTETARFAEMAE-VDLVLGNS------EKLERASYGRL 102 Query: 148 -----------RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 RV D SV + L +DG R R AF+ +Q GCD CTFC++P Sbjct: 103 AQFGLDDSEKVRVNDI-MSVRETAGHL--IDGLEGRAR---AFVQVQNGCDHRCTFCIIP 156 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 + RG S + VVD+ R+L+DNG EI L G ++ ++ G L G + + L Sbjct: 157 FGRGNSRSVPMGVVVDQVRRLVDNGYLEIVLTGVDITSY-GADLPGAPRLGALVAKILKL 215 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + GL RLR ++ + L++ + + LMP+ HL +Q+G D ILK M RRH + Sbjct: 216 VPGLKRLRLSSIDSIEADPALMRVVAEDERLMPHFHLSLQAGDDLILKRMKRRHLRADTI 275 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 + + +R +RPD+ +D I GFP ET+ F ++ +VD G F +SPR GTP + Sbjct: 276 RFCEEVRRLRPDVVFGADIIAGFPTETEAMFENSLAIVDDCGLTHLHVFPFSPRPGTPAA 335 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 M Q+D+ V R L+ + ++ A VG++ VL+E+ G +GR+ Sbjct: 336 RM-PQLDKAVIKARAARLRARGEAALAAYLAAEVGRLRPVLVEREG------LGRTEQFT 388 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V ++ G+I++ RIT L G L+ Sbjct: 389 QVEVDGGTP--GEIVETRITGHTGRHLLGTLL 418 >gi|205352105|ref|YP_002225906.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|238066622|sp|B5R840|RIMO_SALG2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|205271886|emb|CAR36726.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627147|gb|EGE33490.1| putative FeS oxidoreductase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 441 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 233/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ + + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPYSYEQVLQHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V++++ +E G+ Sbjct: 343 GANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ + L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441 >gi|146306744|ref|YP_001187209.1| MiaB-like tRNA modifying enzyme YliG [Pseudomonas mendocina ymp] gi|238066507|sp|A4XT11|RIMO_PSEMY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|145574945|gb|ABP84477.1| SSU ribosomal protein S12P methylthiotransferase [Pseudomonas mendocina ymp] Length = 440 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 148/472 (31%), Positives = 228/472 (48%), Gaps = 64/472 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC DS R+ +GYE V + DAD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKATVDSERILTQLRMEGYEIVPTYQDADVVVVNTCGFIDSAKAESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G I E G V+V GC+ AE + I P V V GPQ Y ++ + Sbjct: 65 IGE-------AIAENGK--VIVTGCMGVAE-DSIRDVHPSVLAVTGPQQYEQVVSAVHEV 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 V K E ++D G A+L I EGC+ C+FC++P R Sbjct: 115 ------------VPPKTEHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMR 162 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR + V+ EA +L+ GV E+ ++ Q+ +A W G+ + K Sbjct: 163 GKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDMKYKLDFWNGQPV---KTRML 219 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 +L +LS + VRL Y +P + A G L+PYL +P Q S ++LKSM R Sbjct: 220 ELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAAGK---LLPYLDIPFQHASPKVLKSMKR 276 Query: 309 RHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 A+E + + I + R + P++ I S FIVGFPGET++DF+ +D + + + F+ Sbjct: 277 --PAFEDKTLARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQ 334 Query: 367 YSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN---DACVGQIIEVLIEKHG 422 YSP G P +++ LE V ++VK ER ++ + QQ + A +G ++VL+++ Sbjct: 335 YSPVEGAPANDLGLEPVPDDVKQER---WERFMAHQQAISSARLQAKIGLEMDVLVDEVD 391 Query: 423 KEKGKLVGRSPWLQ------SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 E V RS W SV ++S GD ++VRI D ++GELV Sbjct: 392 GEGA--VARS-WADAPEIDGSVFIDSTAVKPGDKVRVRIVDADEYDMWGELV 440 >gi|148270069|ref|YP_001244529.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga petrophila RKU-1] gi|238064961|sp|A5IL80|RIMO_THEP1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|147735613|gb|ABQ46953.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga petrophila RKU-1] Length = 430 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 138/455 (30%), Positives = 229/455 (50%), Gaps = 38/455 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA----EKVY 81 R +K GC N D + + G+E V + DAD++VL+TC E A ++++ Sbjct: 2 RVGIKVLGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIF 61 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 SF+ +++ + G L VV GC+ Q EE+ + P V+ +G + +E Sbjct: 62 SFV-------DAKDQYGYKL--VVKGCLVQRYYEELKKEVPEVDQWIGVADPEEIANAIE 112 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 V D +V +R+ + + Y A++ I +GCD+ CTFC +P +G Sbjct: 113 NGT--DLVPDQPETVYRYRKRIDLEERPY-------AYVKISDGCDRGCTFCSIPSFKGS 163 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 SRS+ + E L+ G EI L+ Q+ ++ G+D K DLL L+ + G Sbjct: 164 LRSRSIEDITREVEDLLKEGKKEIILVAQDTTSY---GIDLYRKQALPDLLRRLNSLNGE 220 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R HP +++ +I A +LD ++ Y +PVQ GSD+ILK M R ++ E ++++ Sbjct: 221 FWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLS 280 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR PD + + IVGFPGET++DF V++I + + +F YS GT N+ E Sbjct: 281 SIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKE 340 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433 +VD + + E LL LQ ++ ++ D VG+ ++ L+E GKE LVGR+ P Sbjct: 341 KVDPEMAKRRQEELLLLQAEISNSRL---DRFVGKKLKFLVE--GKEGKFLVGRTWTEAP 395 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + VV IGD ++V I + ++G ++ Sbjct: 396 EVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVI 430 >gi|285808553|gb|ADC36074.1| putative 2-methylthioadenine synthetase [uncultured bacterium 164] Length = 449 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 136/452 (30%), Positives = 216/452 (47%), Gaps = 24/452 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M GYE + +AD +V+NTC E A ++ + L Sbjct: 8 SLGCPKNLVDSEVMMGQLAEAGYEITSKAGEADTVVVNTCGFIESAKQESIDAI-----L 62 Query: 91 KNSRIK-EGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + +R+K EG V+VAGC+ + E++++ P V+ +G ++ E+L+ A Sbjct: 63 EATRLKTEGHATRVIVAGCMVERYREDLVKELPEVDAFIGTS---QVGEILKAADENFDA 119 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + D R R TAF+ I EGCD+ C FC +P RG SR Sbjct: 120 GQLTATPIGNKSATYLYDEYTPRLRATQSHTAFVKIAEGCDRPCAFCSIPSMRGSFRSRR 179 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +V+EAR L GV E+ L+ Q+ + + G+ L GE + L+ ++ EI L +R Sbjct: 180 FGSIVEEARMLARQGVKEVVLIAQDSSRY-GEDL-GEVDALAALIRAIGEIDDLEWVRVM 237 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P +SD + A + + YL +P+Q S +LK M R ++I+R+R Sbjct: 238 YAYPTHISDAFLAAVAETPKAVKYLDMPLQHASRNVLKLMKRGGNRGSLERLIERVRERV 297 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P IAI + FI GFPGET +DF M+ V + F YS GTP + +VD + Sbjct: 298 PGIAIRTTFITGFPGETQEDFEELMEFVRNCRFDNVGVFTYSDEEGTPAYVLPNKVDPKI 357 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVVLN 441 +R L K+ N A +G+ +V+ E +E +G+L G++ + +L Sbjct: 358 AKQRRGRLMKEQARISKQLNAAKIGETYKVMFEGISQESDMLFQGRLPGQTQDIDGYILI 417 Query: 442 SK-----NHNIGDIIKVRITDVKISTLYGELV 468 + +G+I VRIT+ L GE+V Sbjct: 418 NDVPERLEPQVGEIYDVRITEALEYDLVGEIV 449 >gi|300175767|emb|CBK21310.2| unnamed protein product [Blastocystis hominis] Length = 500 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 134/425 (31%), Positives = 216/425 (50%), Gaps = 50/425 (11%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN DS ME + G + ++AD+I++NTC +RE A ++++ L + RNL Sbjct: 1 MNRADSEIMETLLSECGMTESKNEEEADVIIMNTCSVREHAESRIWNRLKQFRNLDKKYK 60 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 K ++ ++GC+A ++L V+VVVGP +Y LP L+ A GK+ T+ + Sbjct: 61 KR---TILCISGCMATRLRTKLLESG--VDVVVGPDSYVHLPPLIFDAFNGKQAFHTELN 115 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 + ++ +S + T +TI GC+ C++CVVPYTRG E S + V+ E + Sbjct: 116 GNNDYDAIS---PSFLEPLPATQ-ITIMRGCNNMCSYCVVPYTRGRERSVDVDVVLREVK 171 Query: 216 KLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCT----------------FSDLLYSL 254 + ++G EI LLGQNVN++ KG + + T F +LL + Sbjct: 172 RAEEHGYKEIMLLGQNVNSYCDRSHLAKGSEKYETTPGFRSPTSTKAKTGILFPELLRLV 231 Query: 255 SEIKGLVRLRYTTSHPR-----------DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 +E R+R+ + HP+ D +++ + + LHLP+QSGS+ L Sbjct: 232 AEEVPETRIRFMSPHPKVEIGGRKIYLKDFPMSVLEVIAEHPNICRSLHLPLQSGSNSCL 291 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 + MNR +T + Q++D IRS+ PD AIS+D I GF GET+ + T++L+ +IG+ AF Sbjct: 292 QRMNRPYTREAFIQLVDAIRSILPDCAISTDVIAGFCGETEAEHADTVELMREIGFDHAF 351 Query: 364 SFKYSPRLGTPGSNML-EQVDENVKAERLLCLQ----KKLREQQVSFNDACVGQIIEVLI 418 + YS R T + + VK RL+ +Q LRE+ S G++ VL+ Sbjct: 352 MYLYSMRENTYAWRYFKDDIPLEVKKRRLVEIQDAFYSTLREKLPSQK----GKVELVLV 407 Query: 419 EKHGK 423 E K Sbjct: 408 EGESK 412 >gi|207091912|ref|ZP_03239699.1| putative ATP-binding protein [Helicobacter pylori HPKX_438_AG0C1] Length = 291 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 109/291 (37%), Positives = 167/291 (57%), Gaps = 11/291 (3%) Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE- 243 GCDK C +C+VP+TRG EIS + ++ EA KL +NG E+ LLGQNVN + G E Sbjct: 1 GCDKKCAYCIVPHTRGKEISIPMDLILKEAEKLANNGTKELMLLGQNVNNY-GTRFSSEH 59 Query: 244 -KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 K FSDLL LSEI+G+ R+R+T+ HP M+D ++ + +H+P+QSGS + Sbjct: 60 AKVDFSDLLDKLSEIQGIERIRFTSPHPLHMNDAFLERFAKNPKVCKSIHMPLQSGSSAV 119 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 LK M R ++ + ++R++++ P++ IS+D IVGFP E+D DF TM++++K+ + Sbjct: 120 LKMMRRGYSKEWFLNRVERLKALVPEVGISTDIIVGFPNESDKDFEDTMEVLEKVRFDTL 179 Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 +SF YSPR T E+V V + RL LQ + +E VG+ VL+E Sbjct: 180 YSFIYSPRPFTEAGAWKERVPLEVSSSRLERLQNRHKEILEEKAKLEVGKTHVVLVENRR 239 Query: 423 KEKGKLV---GRSPWLQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELVV 469 + ++V GRS + + + K N G+++KV I IS G L+ Sbjct: 240 EMDNQIVGFEGRSDTGKFIEVTCKEKRNPGELVKVEI----ISHSKGRLIA 286 >gi|158425333|ref|YP_001526625.1| MiaB-like tRNA modifying enzyme [Azorhizobium caulinodans ORS 571] gi|158332222|dbj|BAF89707.1| MiaB-like tRNA modifying enzyme [Azorhizobium caulinodans ORS 571] Length = 429 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 135/449 (30%), Positives = 210/449 (46%), Gaps = 64/449 (14%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N D ++ + G R +++N+C + AE V IR Sbjct: 14 VVTFGCRLNTLDGAEIQRAATAAGLTRT--------VIVNSCAV---TAEAVRQARQSIR 62 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--------- 139 LK + L VVV GC AQ E PQT+ +PE+ Sbjct: 63 RLKRADPA----LKVVVTGCAAQTE----------------PQTFATMPEVDRVVGNGAK 102 Query: 140 --LERARFGKRVVDTDYSVEDKFE----------RLSIVDGGYNRKRGVTAFLTIQEGCD 187 +E + D S E+K + L +VDG R R AF+ +Q GCD Sbjct: 103 GAVETWAEARAAFDFGVSAEEKVKVDDIFAVRETALHMVDGMDGRTR---AFVQVQNGCD 159 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247 CTFC++PY RG S + VV R L + G E+ L G ++ ++ G L G Sbjct: 160 HRCTFCIIPYGRGASRSVPMGDVVAHIRALAEGGQKEVVLTGVDLTSY-GADLPGAPTLG 218 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 + L ++ L RLR ++ + L++A + + LMP+LHL +QSG D ILK M Sbjct: 219 RLVRAILRQVPELERLRLSSIDSVEADADLLRALAEEERLMPHLHLSLQSGDDMILKRMK 278 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 RRH+ + +++ +R +RPD+ + +D I GFP ET+ FR ++ +VD G + F + Sbjct: 279 RRHSRAQVIALVEEMRRLRPDLVLGADLIAGFPTETEAMFRNSLSIVDACGLSFLHVFPF 338 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 S R GTP + M V +V R L++K E A +G+ VL+E+ G Sbjct: 339 SARAGTPAARM-PPVPGDVVDARARRLREKGEEALRRHLAAEIGRRHPVLVERGG----- 392 Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRIT 456 +GR+P+ V L+ + G +I +RI Sbjct: 393 -IGRTPYFTPVRLH-RAAQPGAVIDLRIA 419 >gi|282882041|ref|ZP_06290682.1| hypothetical protein HMPREF0628_0687 [Peptoniphilus lacrimalis 315-B] gi|281298071|gb|EFA90526.1| hypothetical protein HMPREF0628_0687 [Peptoniphilus lacrimalis 315-B] Length = 437 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 133/447 (29%), Positives = 236/447 (52%), Gaps = 26/447 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N DS M + Y N AD+I++NTC + A E+ + L Sbjct: 8 TLGCSKNEVDSSCMMSILDKNRYSVENDPQKADIIIVNTCGFIDAAKEESIDTI-----L 62 Query: 91 KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + ++ KE G ++++GC+AQ EE+L+ P + ++G ++ ++L+R+ G++V Sbjct: 63 QMAKYKETGSCKKMILSGCLAQRYPEELLKEIPEADGIIGTGNISQINDILDRSIDGEKV 122 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + D ++ + ++G K +T ++ I EGC+ C++C++P RG SR + Sbjct: 123 IKVD-NINSPY-----LEGIKKEKVNITEYVKISEGCNNNCSYCIIPKLRGKNRSRRIED 176 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 + +E L NG EI L+ QN + G L G + + S L+ +S+I + +R + Sbjct: 177 IYEEVSYLAKNGAREIILIAQNTTDY-GIDLYG-RYSLSKLIKEISKINDIKWIRVLYLY 234 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY-RQIIDRIRSVRPD 328 P +D LI + D L+ Y+ +P+Q SD +LK M+ RHT E+ + +I+++R ++ Sbjct: 235 PDHFTDELINEFINNDKLVKYVDIPLQHYSDHVLKLMD-RHTDKEHIKNLIEKLRKIKG- 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + I + FIVGFPGE+++DF + ++ + + F YS T +N+ EQ+DE+VK Sbjct: 293 LVIRTTFIVGFPGESEEDFNILREFINTYKFDKLGVFTYSREESTKANNLNEQIDEDVKE 352 Query: 389 -ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV-LNS 442 R + +Q +L+ + D +GQ+++VLIE+ E GR SP + V+ +NS Sbjct: 353 YRRDIIMQDQLKISERLLEDK-IGQVLQVLIEEK-IEDNLFAGRSYIDSPDIDGVIYVNS 410 Query: 443 -KNHNIGDIIKVRITDVKISTLYGELV 468 KN I I V++T L G+ + Sbjct: 411 DKNLTINSFINVKVTSSMEYDLIGDAI 437 >gi|91977104|ref|YP_569763.1| hypothetical protein RPD_2633 [Rhodopseudomonas palustris BisB5] gi|123721828|sp|Q136X7|RIMO_RHOPS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|91683560|gb|ABE39862.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 441 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 139/466 (29%), Positives = 222/466 (47%), Gaps = 48/466 (10%) Query: 18 VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 + Q P+ FV S GC + DS R+ ++GYE D ADL+++NTC + A Sbjct: 1 MQQAAAPKISFV-SLGCPKALVDSERIITRLRAEGYELARQHDGADLVIVNTCGFLDSAK 59 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 ++ + +G V+V GC+ AE E+I P V + GPQ Y + Sbjct: 60 QESLAAIGEAMAANGK---------VIVTGCMG-AEPEQIEAAYPGVLSITGPQQYESVL 109 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 E + RA+ D E + + + Y A+L I EGC+ C+FC++P Sbjct: 110 EAVHRAKPALHNPHLDLVPE---QGIRLTPRHY-------AYLKISEGCNNRCSFCIIPK 159 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246 RG +SRS V+ EA KL+ GV E+ ++ Q+ +A W+ + + + Sbjct: 160 LRGDLVSRSADDVLREAEKLVAAGVKELLVISQDTSAYGVDLKYAESPWKDRTV---RAK 216 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F DL L E+ VRL Y +P + A G + +PYL +P Q S +LK M Sbjct: 217 FIDLARELGELGAWVRLHYVYPYPHVDEVIGLMAEGKV---LPYLDIPFQHASPDVLKLM 273 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + I R R+ PD+A+ S FIVGFPGET+ DF +D +D+ + +FK Sbjct: 274 KRPAAQDKTLDRIKRWRADCPDLALRSTFIVGFPGETERDFEFLLDWLDEAEIDRLGAFK 333 Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 Y P G P + + +Q+ VK E RL+ Q+ + +++ VG +++I++ G Sbjct: 334 YEPVAGAPSNALPDQISAEVKQERWNRLMARQQVISARRLKRK---VGTRQQIIIDEVGP 390 Query: 424 --EKGKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465 KG+ +P + SV L+S+ +G+I+ +I L+G Sbjct: 391 TVAKGRSKADAPEIDGSVYLSSRRPLRVGEIVTAKIDRADAYDLHG 436 >gi|330830506|ref|YP_004393458.1| ribosomal protein S12 methylthiotransferase rimO [Aeromonas veronii B565] gi|328805642|gb|AEB50841.1| Ribosomal protein S12 methylthiotransferase rimO [Aeromonas veronii B565] Length = 428 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 144/451 (31%), Positives = 221/451 (49%), Gaps = 40/451 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC N+ DS R+ ++GY+ V S DDA+L+V+NTC + A ++ +G Sbjct: 2 GCPKNLVDSERILTQLRTEGYDVVPSYDDAELVVVNTCGFIDSAVQESLEAIGEA----- 56 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 + E G V+V GC+ E + I P V + GP Y + G Sbjct: 57 --LAENGK--VIVTGCLGAKENQ-IREIHPKVLEITGPHAYEEV--------LGHVHKYV 103 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 + + F L G R A+L I EGC+ CTFC++P RG +SR + V+ Sbjct: 104 EKPQHNPFTSLVPAHGVKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLA 162 Query: 213 EARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVRLR 264 EA++L + GV E+ ++ Q+ +A+ R DG K + L L+++ VRL Sbjct: 163 EAKRLKEAGVKELLVISQDTSAYGVDVKHRTGFYDGMPVKTSMVALCEELAKLDIWVRLH 222 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y +P D +I D VL PYL +P+Q S RILK M R T + I + R Sbjct: 223 YVYPYPH--VDDIIPLMRDGKVL-PYLDIPLQHASPRILKLMKRPGTVERTLERIQKWRE 279 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P I + S FIVGFPGET++DF+ +D +DK + FKYSP G + + + V E Sbjct: 280 ICPQITLRSTFIVGFPGETEEDFQMLLDFIDKAELDRVGCFKYSPVEGALANELPDPVPE 339 Query: 385 NVKAERLLCLQKKLR-EQQVSFNDAC--VGQIIEVLIEKHGKE--KGKLVGRSPWLQSVV 439 ++ ER Q+ + +QQVS VGQ + V+I++ +E G+ +P + +V Sbjct: 340 EIQEER---FQRFMELQQQVSIRKLARKVGQEMTVIIDEVDEEGATGRSFADAPEIDGLV 396 Query: 440 -LNSKNH-NIGDIIKVRITDVKISTLYGELV 468 LN + GD++KVRI + L+ L+ Sbjct: 397 YLNGETGLKPGDMVKVRIDESDEYDLWASLI 427 >gi|316934166|ref|YP_004109148.1| MiaB-like tRNA modifying enzyme YliG [Rhodopseudomonas palustris DX-1] gi|315601880|gb|ADU44415.1| MiaB-like tRNA modifying enzyme YliG [Rhodopseudomonas palustris DX-1] Length = 441 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 141/466 (30%), Positives = 223/466 (47%), Gaps = 48/466 (10%) Query: 18 VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 + Q P+ FV S GC + DS R+ ++GYE D ADL+++NTC + A Sbjct: 1 MQQAAAPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADLVIVNTCGFLDSAK 59 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 ++ + +G V+V GC+ AE E+I P V + GPQ Y + Sbjct: 60 QESLAAIGEAMAANGK---------VIVTGCMG-AEPEQIEAAYPGVLSITGPQQYESVL 109 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 + + RAR D V + RL+ A+L I EGC+ C+FC++P Sbjct: 110 DAVHRARPALHNPHLDL-VPPQGVRLTPRH---------YAYLKISEGCNNRCSFCIIPK 159 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246 RG +SR V+ EA KL+ GV E+ ++ Q+ +A W+ + + + Sbjct: 160 LRGDLVSRPAGDVLREAEKLVAAGVKELLVISQDTSAYGVDVKYAESPWKDRAV---RAK 216 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F DL L E+ VRL Y +P D +I D VL PYL +P Q S +L+ M Sbjct: 217 FLDLANELGELGAWVRLHYVYPYPH--VDEVIGLMADGKVL-PYLDIPFQHASPDVLRQM 273 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + I R R + P++A+ S FIVGFPGET+ DF +D +D+ + +FK Sbjct: 274 KRPAAQDKTLDRIKRWREICPELALRSTFIVGFPGETERDFEFLLDWLDEAEIDRVGAFK 333 Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 Y P G P + + +Q+ + VK E RL+ Q+ + +++ VG +V+I++ G Sbjct: 334 YEPVAGAPSNALEDQIADEVKQERWNRLMARQQAISARRLKRK---VGTRQQVIIDEIGP 390 Query: 424 --EKGKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465 KG+ +P + +V L+S+ IG+I+ +I L+G Sbjct: 391 TVAKGRSKADAPEIDGAVYLSSRRPLRIGEIVTAKIDRADAYDLHG 436 >gi|223984231|ref|ZP_03634378.1| hypothetical protein HOLDEFILI_01672 [Holdemania filiformis DSM 12042] gi|223963800|gb|EEF68165.1| hypothetical protein HOLDEFILI_01672 [Holdemania filiformis DSM 12042] Length = 460 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 120/412 (29%), Positives = 210/412 (50%), Gaps = 37/412 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S GC N+ DS RM + G+E V+ + +A+ I++NTC E A E+ + + + Sbjct: 25 VVSLGCCKNLVDSERMMGLLRQSGHEIVSDVHEAEAIIVNTCGFIEPAKEEAINTILEMA 84 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 KN ++ ++VAGC+AQ ++ P V+ + Y ++ ++L R G++ Sbjct: 85 EYKNENCRK-----LIVAGCLAQRYKADLEAEMPEVDCFLTISDYPKMGQILTRV-LGEK 138 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRK------RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 V+D GY + + TA+L I EGCD C++C +P RG Sbjct: 139 VLD-----------------GYGKNTRLVSTKPWTAYLKIAEGCDNRCSYCAIPGIRGGY 181 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +S + +V EA++L GV E+ ++ Q+ + + G L G + + DLL L+ I GL Sbjct: 182 VSFPIEDLVAEAKQLASEGVKELVVIAQDTSRY-GTDLYGRRRIW-DLLTELNAIDGLHW 239 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R +P ++ D + DL ++PY +PVQ GSD++LK MNRR + + + I Sbjct: 240 IRVLYLYPDEIDDEFVTGIKDLKKVIPYFDIPVQHGSDKMLKLMNRRGSVESILRTVKLI 299 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + + IVGFP ET++DF+ +D + ++ + + +F +S TP M Q+ Sbjct: 300 RENYDMPVLRTTMIVGFPQETEEDFQMLIDFIKEVRWDRLGAFTFSNEEDTPAYTMDGQI 359 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 + + + ERL+ +Q ++ ++ +A +G+ +EVL+E G GR Sbjct: 360 SQEIMDERLERLMTVQNQIAQEN---GEALIGKTLEVLVENQDGLTGYYHGR 408 >gi|188586422|ref|YP_001917967.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351109|gb|ACB85379.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 451 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 120/414 (28%), Positives = 217/414 (52%), Gaps = 31/414 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSFLG 85 F + + GC +N +S M GY + DD AD+ ++N+C + + AA K Sbjct: 10 FKIITLGCPLNQSESDLMRARLHQAGYSETGTGDDTADIYIINSCTVTQNAARK------ 63 Query: 86 RIRNLKNSRIKEGG--DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + K +R + G D V + GC + E EEI + P +++++G + R Sbjct: 64 ---SRKEARKAKKGNPDAWVCLVGCYGEMEYEEIKEKIPEIDLIIGTRN---------RE 111 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + +++V + + ++F D R + + IQEGCD+ C++C+V RG Sbjct: 112 KAIEKLVGQELDL-NQFHNFP-QDNNEIRPDKIRPAIKIQEGCDQSCSYCIVTLARGRPK 169 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260 SR Q+ + + ++ G EI L G N+ + GK + G+ F DL +SE+ L Sbjct: 170 SREFRQIKQQVKSYLEEGYQEIILAGTNMGLY-GKDVKGQSKHSYKFIDLPMLVSELATL 228 Query: 261 ----VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 R+R ++ P +M++ L+ A + D + YL+LP+QSGSDRILK MNR++T ++ Sbjct: 229 PYDDYRIRISSLEPLEMTEELLYAMKEHDKICNYLYLPLQSGSDRILKLMNRKYTTDDFA 288 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +I+++ +++ P + I +D IVGFPGE ++D +ATM+ V+++ ++ F YSPR T + Sbjct: 289 RIVEKAKTLLPGVGIMTDLIVGFPGEKEEDHKATMEFVEELKLSKLHVFPYSPRPKTLAA 348 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 + QV ++K R +++ ++ F + + VL E++ + K++G Sbjct: 349 SFNVQVRPDIKRARTEEMKELGQKLARRFYQENLNTRLRVLYERNYETSDKILG 402 >gi|116327128|ref|YP_796848.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332215|ref|YP_801933.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119872|gb|ABJ77915.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125904|gb|ABJ77175.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 443 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 117/406 (28%), Positives = 213/406 (52%), Gaps = 27/406 (6%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 I + + GC++N ++S + G+ V + +++++NTC + KA K Sbjct: 6 IAERTVLFNTLGCRLNFFESDGLFSSLSKHGFRSVEVGEHPEVVIINTCTVTNKADSKN- 64 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-L 140 RN + IK+ + V GC A+ + E I P V VVG +LP + L Sbjct: 65 ------RNTIRNAIKKFPGSQIWVTGCYAETDRESI-EAIPGVAGVVGNTEKSKLPVMIL 117 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVD---GGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 E+ K ++D++ ++ ++R S D G+ R A+L IQ+GC++ C++C +P Sbjct: 118 EK----KGLIDSNQLIQFSYDRFSYSDVLPNGHTR-----AYLKIQDGCNRRCSYCKIPQ 168 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSE 256 RG+ +SR V+D+ L D+GV EI L G N+ +R DGE K F+ +L + + Sbjct: 169 ARGLGVSRKYQDVLDQVHFLQDHGVGEIVLTGVNLGWYR----DGENKKAFNKILADILK 224 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I R+R ++ P D+ + L++ P+LH+P+QSG+ ILK M R +T +R Sbjct: 225 ILEYSRIRISSIEPPDVGNELVELMTH-PRFTPFLHVPLQSGNAEILKKMKRTYTPETFR 283 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 + ++ + P++ + +D IVGFPGET++ F ++ ++ +G+A+ +F +S R T Sbjct: 284 KRVEIAKEKIPNLFLGTDIIVGFPGETEEMFLDSVKMIQDLGFAKIHAFPFSVRRNTLAE 343 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 + V + +K R+ L R+ +++ + +GQ+ E ++E+ G Sbjct: 344 TFPDSVSKEIKKGRVHSLNSLSRKLHENYSLSVIGQVREAILEQGG 389 >gi|15644605|ref|NP_229658.1| hypothetical protein TM1862 [Thermotoga maritima MSB8] gi|81553760|sp|Q9X2H6|RIMO_THEMA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|4982447|gb|AAD36924.1|AE001823_6 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 430 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 138/455 (30%), Positives = 229/455 (50%), Gaps = 38/455 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA----EKVY 81 R +K GC N D + + G+E V + DAD++VL+TC E A ++++ Sbjct: 2 RVGIKVLGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIF 61 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 SF+ +++ + G L VV GC+ Q EE+ + P V+ +G + +E Sbjct: 62 SFV-------DAKDQYGYKL--VVKGCLVQRYYEELKKEIPEVDQWIGVADPEEIANAIE 112 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 V D +V +R+ + + Y A++ I +GCD+ CTFC +P +G Sbjct: 113 NGT--DLVPDQPETVYRYRKRIDLEERPY-------AYVKISDGCDRGCTFCSIPSFKGS 163 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 SRS+ + E L+ G EI L+ Q+ ++ G+D K DLL L+ + G Sbjct: 164 LRSRSIEDITREVEDLLKEGKKEIILVAQDTTSY---GIDLYRKQALPDLLRRLNSLNGE 220 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R HP +++ +I A +LD ++ Y +PVQ GSD+ILK M R ++ E ++++ Sbjct: 221 FWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLS 280 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR PD + + IVGFPGET++DF V++I + + +F YS GT N+ E Sbjct: 281 SIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKE 340 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433 +VD + + E LL LQ ++ ++ D VG+ ++ L+E GKE LVGR+ P Sbjct: 341 KVDPEMAKRRQEELLLLQAEISNSRL---DRFVGKKLKFLVE--GKEGKFLVGRTWTEAP 395 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + VV IGD ++V I + ++G ++ Sbjct: 396 EVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVI 430 >gi|282855982|ref|ZP_06265273.1| ribosomal protein S12 methylthiotransferase RimO [Pyramidobacter piscolens W5455] gi|282586201|gb|EFB91478.1| ribosomal protein S12 methylthiotransferase RimO [Pyramidobacter piscolens W5455] Length = 434 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 133/451 (29%), Positives = 215/451 (47%), Gaps = 27/451 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + S GC N DS + + + G+ V S ++AD+ ++NTC + A E+ + Sbjct: 2 KNLHIISLGCPKNAVDSEHLGGVLEAAGFRLVGSAEEADVALVNTCGFLQAAVEEGIQVI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + LK K G + V GC+ G+E+ P V+ + + L L E R Sbjct: 62 LDLERLK----KAGVVRQIAVVGCMLNRYGDELKAEFPTVDFWAKSEDWGAL--LREMGR 115 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + E R + + R +L I EGC+ C++C +P RG S Sbjct: 116 ------GVPAAAESGCLRADLAGTPWTR------YLKISEGCNSRCSYCAIPGIRGRLRS 163 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVRL 263 + Q+V EAR+L+D G E+ L+GQ ++ + G L G + + LL L E+ V L Sbjct: 164 VPVEQIVGEARRLVDEGAKELCLVGQELSIY-GSDLFG-RPSLPRLLDELEKELPRGVWL 221 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R HP + ++ V++P+L +P+Q D +L+ MNR R++ R R Sbjct: 222 RLFYLHPSLVDAVFLERVAASPVILPWLDIPIQHVDDDVLRRMNRPPVERHIRELFARGR 281 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PD A + +VGFPGET F +D V++IG+ + +F YSP GTP ++ +Q+ Sbjct: 282 EINPDFAFRTTLMVGFPGETRAQFDKLLDFVEEIGFDRLGAFPYSPEDGTPAASFPDQIP 341 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV- 438 E K R L + R+ ++ VG + VLI++ +E G+ VGRS P + V Sbjct: 342 EEEKTARYNELMELQRQVSLTRQAHFVGHELNVLIDEVDEETGERVGRSFRDAPEIDGVV 401 Query: 439 -VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + GD+I+V+IT L GE + Sbjct: 402 TVTGAGRARPGDMIRVKITASSEYDLSGEAI 432 >gi|262384855|ref|ZP_06077987.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 2_1_33B] gi|262293571|gb|EEY81507.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 2_1_33B] Length = 444 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 126/403 (31%), Positives = 202/403 (50%), Gaps = 22/403 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + QG +V + AD+ V+NTC + E A +K + RI Sbjct: 16 TLGCKLNFAETSTIGKLLAEQGVRKVRPGEKADICVVNTCSVTELADKKCRQAIRRIS-- 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---ELLERARFGK 147 K+ +VV GC AQ + EE+ V++V+G + + E LE+ G Sbjct: 74 -----KQHPGAFIVVTGCYAQLKPEEVSHIEG-VDLVLGAEQKLEILQYLENLEKKEHGG 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 V+ + F D +R R FL +Q+GCD +C++C +P+ RG + ++ Sbjct: 128 TVIASQSKDIRSFSPSCSAD---DRTR---HFLKVQDGCDYYCSYCTIPFARGRSRNGTI 181 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++AR++ G EI L G N+ + GK D TF DL+ +L E++G+VR R ++ Sbjct: 182 ASMVEQAREVASKGGKEIVLTGVNIGDF-GKSTDE---TFIDLIRALDEVEGIVRYRISS 237 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D I P+ H+P+QSGSD +L+ M RR+ +R I++I+ V P Sbjct: 238 IEPNLITDEAIDFVAHSKRFAPHFHIPLQSGSDAVLQLMRRRYDTALFRHKIEKIKEVMP 297 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 I D IVG GETD+ F +D + +Q F YS R GT + VD K Sbjct: 298 HAFIGVDVIVGTRGETDEYFEEARQFIDSLDISQLHVFSYSERPGTQALKIDYVVDPKTK 357 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 R L ++ +F +A +GQ VL E H K+ GK+ G Sbjct: 358 HARSQQLLDISDQKLHAFYEAHIGQEANVLFE-HTKKDGKMHG 399 >gi|161614891|ref|YP_001588856.1| ribosomal protein S12 methylthiotransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|238066592|sp|A9MSQ9|RIMO_SALPB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|161364255|gb|ABX68023.1| hypothetical protein SPAB_02645 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 441 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 136/460 (29%), Positives = 231/460 (50%), Gaps = 41/460 (8%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ L Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQV--LQHVH 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + + + + + Y A+L I EGC+ CTFC++P RG + Sbjct: 115 HYVPKPKHNPFLSLVPEQDVKLTPRHY-------AYLKISEGCNHRCTFCIIPSMRGDLV 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLS 255 SR + V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L LS Sbjct: 168 SRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLS 227 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 ++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 228 KLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVDRQ 284 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 285 LARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGA 344 Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430 +++ +QV E VK E R + LQ+++ +++ VG+ I V++++ +E G+ + Sbjct: 345 NDLPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRSMA 401 Query: 431 RSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +P + V + N+ GDI++V++ + L+G V Sbjct: 402 DAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441 >gi|190150967|ref|YP_001969492.1| hypothetical protein APP7_1698 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307257716|ref|ZP_07539474.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307262124|ref|ZP_07543776.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307264323|ref|ZP_07545912.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|238065277|sp|B3H2N3|RIMO_ACTP7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|189916098|gb|ACE62350.1| hypothetical protein APP7_1698 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306863781|gb|EFM95706.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306868192|gb|EFN00017.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870387|gb|EFN02142.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 443 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 132/459 (28%), Positives = 225/459 (49%), Gaps = 52/459 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ + GY + S ++ADL+++NTC + A ++ +G Sbjct: 11 SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E + I P V + GP +Y + + ++ R Sbjct: 67 ---ALEENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV--MKHVHKYVPRPE 118 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y+ + + + Y A+L I EGCD CTFC++P RG SR + QV Sbjct: 119 RNIYTSLVPAQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMRGDLDSRPIVQV 171 Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255 +DEA++L D+GV E+ ++ Q+ +A W G + T + L SL Sbjct: 172 LDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGAPIKNNLITLCEQLGSLG 231 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 VRL Y +P + A G + +PYL +P+Q S ++LK+M R Sbjct: 232 ---IWVRLHYVYPYPHVDDLIPLMAQGKI---LPYLDIPLQHASPKVLKAMKRPGAIDRT 285 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + I + R + P++ + S FIVGFPGET++DF+ +D +++ + FK+SP G Sbjct: 286 LERIKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFSPVEGAVA 345 Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430 + M +QV E+VK E R + +Q+++ ++ VG+ + V+I++ +E G+ + Sbjct: 346 TEMADQVSEDVKEERFHRFMQVQQRISAARLQQK---VGKTLAVIIDEIDEEGIIGRSMA 402 Query: 431 RSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 +P + VV L+ + +G +I V IT+ L+G Sbjct: 403 DAPEIDGVVYVDNLSEQEVKVGQVISVSITNADEYDLWG 441 >gi|291533186|emb|CBL06299.1| SSU ribosomal protein S12P methylthiotransferase [Megamonas hypermegale ART12/1] Length = 446 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 132/435 (30%), Positives = 212/435 (48%), Gaps = 21/435 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M + E AD++++NTC + A E+ + + + Sbjct: 8 SLGCSKNLVDTEVMLGILAKNNIEITAEPAKADILIVNTCTFIQSAKEESITTILNMAEY 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-RFGKRV 149 K +G +++AGC+ Q G+E+L P V+ +VG + R+ E +E + KRV Sbjct: 68 KQE--GKGKCRSLIIAGCMGQRYGQELLEEFPEVDAIVGTGAWSRIMEAVEATIQERKRV 125 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + T S E + + +A++ I EGC+ C +C +PY RG SR++ Sbjct: 126 LITGESKE----IYTALTPRIFTTPFYSAYIKIAEGCNHRCAYCAIPYVRGNYRSRTIED 181 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 + E L + GV E ++ Q+ + G+ + G K + +LL L +I+ + LR ++ Sbjct: 182 IKQEVEALAEKGVKEFNIIAQDTTYY-GRDIYG-KPSLVELLKELVKIEKVKWLRIQYAY 239 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P +D LI D + Y+ LP+Q + +LK M R T ++ ++R P + Sbjct: 240 PHTFTDELIDLIASEDKICNYVDLPLQHAHNDVLKRMRRSDTKESVEALLAKLRERIPGV 299 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 I S FIVGFPGETD + + V+K + + F YS GTP +M QVDEN+ E Sbjct: 300 VIRSSFIVGFPGETDSQYTTLRNFVEKQRFDKVGIFSYSREEGTPAYDMPNQVDENIMQE 359 Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL--QSVVL 440 R L+ LQ K+ E + N G++++VLIE E+ GRS P + Q + Sbjct: 360 RYHDLMSLQSKISE---TINIEMEGKVLDVLIEGRDDEQHMAYGRSYREAPDVDGQVFIE 416 Query: 441 NSKNHNIGDIIKVRI 455 GDI+KVRI Sbjct: 417 GDDISQPGDIVKVRI 431 >gi|257467388|ref|ZP_05631699.1| Fe-S oxidoreductase [Fusobacterium gonidiaformans ATCC 25563] gi|315918518|ref|ZP_07914758.1| Fe-S oxidoreductase [Fusobacterium gonidiaformans ATCC 25563] gi|313692393|gb|EFS29228.1| Fe-S oxidoreductase [Fusobacterium gonidiaformans ATCC 25563] Length = 436 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 128/443 (28%), Positives = 232/443 (52%), Gaps = 24/443 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + GC++N Y+S +++ +GYE V+ AD+ ++N+C + A K + L Sbjct: 5 KRVAFYTLGCKVNQYESESIKNQLLQKGYEEVDFESIADIYIVNSCTVTSIADRKTRNML 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + K+ V+V GC A+ +++L I + V+G + + + ++ Sbjct: 65 RRAK-------KQNPSGKVIVTGCYAETNRKDLLEMEEI-DFVIGNKDKSAVAKFVQEIH 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEI 203 +RV E F+ + + R +T A++ IQ+GC++FC++C +P+ RG Sbjct: 117 TQERVEKK----ESIFQEKEYQEYEFATFREMTRAYVKIQDGCNEFCSYCKIPFARGKSR 172 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +V++E KL+ G EI L+G N+ + GK L+G+ +F L+ + + L R+ Sbjct: 173 SRKQEKVLEEIDKLLMEGFQEIILIGINLGDY-GKDLEGD-TSFETLVQEILKRDSLKRV 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R + +P ++D I + +MP+LH+ +QS D +L++M R++ + +R Sbjct: 231 RIGSVYPDRITDSFISLFKNPK-MMPHLHISLQSCDDTVLRNMKRKYGRELILSSLSSLR 289 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P + ++D IVGFPGET++ F+ T +++IG++ F YS R GT S M ++ Sbjct: 290 KEVPSMEYTADIIVGFPGETEEMFQNTYASLEEIGFSHLHIFPYSDREGTLASRMKNKLS 349 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 +K ER L LQKK+ E + A +G+ IEVLIE+ + G G SP V + Sbjct: 350 PEIKKERVTILENLQKKVEEDR---RKAYLGKTIEVLIEEE--KDGYWWGYSPNYLRVKV 404 Query: 441 NSKNHNIGDIIKVRITDVKISTL 463 ++ ++ +++V+I V+ L Sbjct: 405 KGEDISVNCLVQVKIEKVEKGVL 427 >gi|188586093|ref|YP_001917638.1| MiaB-like tRNA modifying enzyme YliG [Natranaerobius thermophilus JW/NM-WN-LF] gi|238066413|sp|B2A3C0|RIMO_NATTJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|179350780|gb|ACB85050.1| MiaB-like tRNA modifying enzyme YliG [Natranaerobius thermophilus JW/NM-WN-LF] Length = 444 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 128/449 (28%), Positives = 225/449 (50%), Gaps = 26/449 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D+ M+ + + Y+ + DAD+I++NTC + A E+ + L Sbjct: 7 SLGCAKNQVDTEVMQGILENSNYKMTDDYYDADIIIVNTCGFIDDAKEESVDHI-----L 61 Query: 91 KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + +++KE G L +++VAGC++Q E + P ++ ++G T ++ E++ A G + Sbjct: 62 EVAQLKETGKLKVLIVAGCLSQRYQESLKEEIPEIDAMIGTDTQDKITEVISSALKGNYI 121 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKR----GVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++RL+ +D ++ G +A++ I EGC +C++C +P RG SR Sbjct: 122 --------SFYDRLNKIDEQLFLRQPYQPGPSAYIKIAEGCHNYCSYCAIPLIRGGYRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ + EA I+ G E+TL+ Q+ + G + G K + LL L+ I G +R Sbjct: 174 TIEDIKIEANHFIEKGSKELTLIAQDTTNY-GSDIYG-KFSLDTLLDELATIPGDFWIRV 231 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P ++D LI+ + + YL +P+Q D IL SMNR + +I +R Sbjct: 232 LYAYPTRITDSLIEVINRHEKICSYLDIPLQHIDDDILTSMNRGGNKEQILNLIHNLRKN 291 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDI + + IVGFPGETD+ ++ + + +I + A FKYS T N ++V E+ Sbjct: 292 IPDITLRTSLIVGFPGETDEKYQNLISFMQEIEFDHAGIFKYSDEEDTQAYNFKDKVSED 351 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQ-SVV 439 VK +R + +E N+ VG + VLIE+ +++ G+ G +P + +V+ Sbjct: 352 VKEQRYQEAWEVQKEITRKKNEGLVGTEMRVLIEEALEDEPTTKVGRTEGHAPEVDGAVI 411 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + GD I V I L GE+ Sbjct: 412 IPDCEASSGDFINVEIVQALDYDLIGEMT 440 >gi|94263643|ref|ZP_01287452.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93455948|gb|EAT06103.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 452 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 142/467 (30%), Positives = 230/467 (49%), Gaps = 49/467 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRI 87 + S GC N+ DS M + +G V ++ADL+++NTC + A E+ + + LG + Sbjct: 6 LTSLGCPKNLVDSEVMLGLLLERGLTVVGEPEEADLLLVNTCGFIQSAVEEGIDTILGLV 65 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 + +K VVVAGC+ + G E+ R P V++ +GP+ E A G+ Sbjct: 66 ERKREPAVK------VVVAGCMVKRYGAELARELPEVDLFLGPE---------EVATIGR 110 Query: 148 RVVDTDYSVE--------DKFERLS-----IVDGGYNRKRGVT---AFLTIQEGCDKFCT 191 R+ D+ + E +F S +++ RK A+L + EGCD C+ Sbjct: 111 RL-DSLLAAEPAAGPGGGSRFYEQSDLPHFLMNASLPRKLATPSHRAYLKVTEGCDNRCS 169 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDL 250 +C++P RG SR L ++ EAR L GV E+TL+ Q++ A+ GLD +L Sbjct: 170 YCLIPALRGPLRSRPLPDLLLEARALAAAGVKELTLVAQDLTAY---GLDQRGAPRLPEL 226 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L +L + LR +P + + L++ + L+PY LP Q +D +LK+MNR + Sbjct: 227 LKALLAETAIPWLRLLYLYPSRVDEGLLRLVAENPRLLPYFDLPFQHVADHLLKAMNRPY 286 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 RQ++ RIR + P+ AI S FIVGFPGE+++D + + Q F Y P Sbjct: 287 GEKLIRQLVGRIRQLVPEAAIRSTFIVGFPGESEEDSQRLAAFLRDCRLEQVGIFTYYPE 346 Query: 371 LGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--- 424 G+P + + +Q D+ +K R L+ LQ + Q N A +G EVL+E E Sbjct: 347 EGSPAAELPDQCDDQLKEGRRRQLMALQADISLQ---INRARIGTRQEVLVEGVSAETDL 403 Query: 425 --KGKLVGRSPWLQSVV-LNSKNHNIGDIIKVRITDVKISTLYGELV 468 +G+L ++P + V + N GD+++VRI + L G + Sbjct: 404 LLEGRLRQQAPEVDGCVYITEGNCRPGDLVQVRIDEAHPYDLVGAIT 450 >gi|196230124|ref|ZP_03128987.1| MiaB-like tRNA modifying enzyme YliG [Chthoniobacter flavus Ellin428] gi|196225721|gb|EDY20228.1| MiaB-like tRNA modifying enzyme YliG [Chthoniobacter flavus Ellin428] Length = 480 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 136/484 (28%), Positives = 237/484 (48%), Gaps = 49/484 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P++ + S GC N+ D+ M S+G + ++ D+AD++++NTC + A E+ Sbjct: 7 TPKKVGMISLGCAKNLVDAEIMLGGVLSKGMQITSNADEADVLIVNTCAFIDSAKEESIE 66 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + + + + G L +V+GC+AQ +E+ P V+ +G ++E+ Sbjct: 67 AILEAHESRGLKKRAGQRL--IVSGCMAQRFAKELTHEMPEVDAFIGLDQVADAAGIIEQ 124 Query: 143 ARFGKRVVDT--------DYSVEDKFERLSIVD------GGYNRKR-----GVTAFLTIQ 183 F + D +++++E L++V Y+ R TAF I Sbjct: 125 V-FSRPAAPVPAAKAKAPDVLLDEQWEPLNLVTRKPVYIPDYDTPRFRLTPAHTAFTKIA 183 Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN-----VNAWRGK 238 EGC+ C+FCV+P RG SR++ VV E R L+ GV EI L+ Q+ ++ W K Sbjct: 184 EGCNHPCSFCVIPQMRGKHRSRTIESVVAEVRSLVAEGVKEINLISQDTTYFGMDLWEEK 243 Query: 239 G-----LDGEK-CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292 +D + T LL L +I+G +R +HP SD LI + + Y+ Sbjct: 244 AGPRQQVDSSRGPTLIKLLRELDKIEGDFWIRLLYTHPAHWSDELIACIAECKKVCRYID 303 Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 +P+Q R+L+ M R ++ +I RIR+ P IAI + FIVGFPGETD++F +D Sbjct: 304 MPLQHIHPRMLELMRRETSSEHIENLIARIRAGIPGIAIRTTFIVGFPGETDEEFNYLLD 363 Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDAC 409 +++ + + F YS G+ + M +QV + VKA +R + LQ+K+ + ++ Sbjct: 364 FIERTRFERLGVFTYSQEEGSRAAKMDDQVPQKVKAARYKRAMKLQQKIARE---ISETQ 420 Query: 410 VGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 VGQ + ++++ LV R +P + +L S +G+ I V IT ++ L G Sbjct: 421 VGQRVRAVVDQ------PLVARAAADAPDIDGRILLSSPAPVGEFIDVEITGTQVYDLVG 474 Query: 466 ELVV 469 + ++ Sbjct: 475 DPIL 478 >gi|33591749|ref|NP_879393.1| hypothetical protein BP0545 [Bordetella pertussis Tohama I] gi|33594966|ref|NP_882609.1| hypothetical protein BPP0250 [Bordetella parapertussis 12822] gi|81424079|sp|Q7VS95|RIMO_BORPE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|81425780|sp|Q7W1U6|RIMO_BORPA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|33565042|emb|CAE39991.1| conserved hypothetical protein [Bordetella parapertussis] gi|33571392|emb|CAE44873.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332381166|gb|AEE66013.1| hypothetical protein BPTD_0554 [Bordetella pertussis CS] Length = 439 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 151/471 (32%), Positives = 230/471 (48%), Gaps = 60/471 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GYE +DAD++V+NTC + A + Sbjct: 4 PKVGFV-SLGCPKALVDSERILTQLRTEGYEVTPEYNDADVVVVNTCGFIDSAKAESLEA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLER 142 +G I E G V+V GC+ E ++R+ P V V GPQ Y E + R Sbjct: 63 IGEA-------IAENGK--VIVTGCMGVEES--VIRQVHPSVLAVTGPQQY----EEVVR 107 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A G D++ L +V G A+L I EGC+ C+FC++P RG Sbjct: 108 AVHGVAPPRQDHN-----PYLDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGD 162 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +SR + V+ EA +L+ GV E+ ++ Q+ +A W G+ + K ++L Sbjct: 163 LVSRPVGDVLSEAERLVRAGVKELLVISQDTSAYGVDIKYRSGFWNGRPV---KTRMTEL 219 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +LSE+ RL Y +P D +I D VL PYL +P Q S RIL++M R Sbjct: 220 CAALSELGVWTRLHYVYPYPH--VDEVIGLMADGKVL-PYLDIPFQHASPRILRAMKR-- 274 Query: 311 TAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 A+E + + I R R PD+ + S FIVGFPGET++DF+ +D + + + F+YS Sbjct: 275 PAFEDKTLARIKRWREECPDLTLRSTFIVGFPGETEEDFQYLLDWMSEAQLDRVGCFQYS 334 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGKE 424 P G P + + V + VK ER ++ E Q + + A VG+ I+VLI+ +E Sbjct: 335 PVEGAPANTLDNPVPDEVKQERW----ERFMEHQQAISTARLSTRVGREIDVLIDSVDEE 390 Query: 425 KGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 VGRS P + V + GD+++VR+TD L+GE + Sbjct: 391 GA--VGRSSADAPEIDGCVYVDSEQPLKAGDMVRVRVTDSDEYDLWGERIA 439 >gi|188589640|ref|YP_001920630.1| hypothetical protein CLH_1236 [Clostridium botulinum E3 str. Alaska E43] gi|238065362|sp|B2V4I1|RIMO_CLOBA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|188499921|gb|ACD53057.1| conserved hypothetical protein [Clostridium botulinum E3 str. Alaska E43] Length = 446 Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 133/436 (30%), Positives = 228/436 (52%), Gaps = 28/436 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + S+ YE N+ +AD+I++NTC E A ++ + + Sbjct: 10 SLGCDKNRVDSEIILGKMSSE-YEITNNAKEADVIIVNTCGFIESAKQESIDTILEMAEY 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL----PELLERARFG 146 KN+ L++ GC+ Q G+E+ P +++++G Y ++ E +E + Sbjct: 69 KNNY----NCKLLIATGCLIQRYGDELKNLIPEIDIMLGVNDYNKIDRVITEFIEGNKEA 124 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++++ YS E+ E + I+ + +A++ I EGC+ FCT+C++P RG SR Sbjct: 125 SKLLN--YSDENINEGIRIL-----TTQKESAYIRIAEGCNNFCTYCIIPKIRGKFRSRR 177 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + ++ EA L GV E+ L+ Q+ + G + G+K LL LS I+G+ +R Sbjct: 178 MENIISEATDLASKGVKELILIAQDTTQY-GSDIYGKK-NLHILLKELSNIEGIKWIRVL 235 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + D LI+ D ++ YL +P+Q SD +LK M R+ + + I+++R+ Sbjct: 236 YCYPEAIYDELIEEIAANDKVVKYLDIPIQHISDHVLKLMGRKTSKKDITDKIEKLRNKI 295 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P+I I + FIVGFP ET +DF ++ + + + FKYS TP S M Q+DE++ Sbjct: 296 PNIVIRTTFIVGFPQETQEDFEEILEFLQEYKLDKVGVFKYSREEDTPASKMDGQIDESI 355 Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQ-SVVL 440 K ER L+ Q+K+ + N V + ++LIE++ E KG+ +P + +V L Sbjct: 356 KEEREEKLMLSQEKISN---NINKLKVDKKYDILIEEYDGEFYKGRNFEMAPDIDGNVFL 412 Query: 441 NS-KNHNIGDIIKVRI 455 S K IG+ +KV+I Sbjct: 413 ESPKKLEIGEFVKVKI 428 >gi|170288753|ref|YP_001738991.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga sp. RQ2] gi|238055229|sp|B1LAG0|RIMO_THESQ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|170176256|gb|ACB09308.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga sp. RQ2] Length = 430 Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 137/452 (30%), Positives = 226/452 (50%), Gaps = 38/452 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA----EKVY 81 R +K GC N D + + +G+E V + DAD++VL+TC E A ++++ Sbjct: 2 RVGIKVLGCPKNEADCEILAGVLRERGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIF 61 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 SF+ K+ +VV GC+ Q EE+ + P V+ +G + LE Sbjct: 62 SFID---------AKDQYSYKLVVKGCLVQRYYEELKKEIPEVDQWIGVVDPEEIANALE 112 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + V + +V +R+ + + Y A++ I +GCD+ CTFC +P +G Sbjct: 113 KG--TDLVPNRPETVYRYRKRIDLEERPY-------AYVKISDGCDRGCTFCSIPSFKGS 163 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 SRS+ + E L+ G EI L+ Q+ ++ G+D K DLL L+ + G Sbjct: 164 LRSRSIEDITHEVEDLLKEGKKEIILVAQDTTSY---GIDLYRKQALPDLLRRLNSLNGE 220 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R HP +++ +I A +LD ++ Y +PVQ GSD+ILK M R ++ E ++++ Sbjct: 221 FWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLS 280 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR PD + + IVGFPGET++DF V++I + + +F YS GT N+ E Sbjct: 281 SIRERFPDAVLRTSIIVGFPGETEEDFEELKRFVEEIQFDKLGAFVYSDEEGTVAFNLKE 340 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433 +VD V + E LL LQ ++ ++ D +G+ ++ L+E GKE LVGR+ P Sbjct: 341 KVDPEVAKRRQEELLLLQAEISNSRL---DRFIGRKLKFLVE--GKEGKFLVGRTWTEAP 395 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 + VV IGD ++V I + ++G Sbjct: 396 EVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWG 427 >gi|119773625|ref|YP_926365.1| ribosomal protein S12 methylthiotransferase [Shewanella amazonensis SB2B] gi|119766125|gb|ABL98695.1| MiaB-like putative RNA modifying enzyme YliG [Shewanella amazonensis SB2B] Length = 493 Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 145/471 (30%), Positives = 228/471 (48%), Gaps = 42/471 (8%) Query: 15 SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74 ++ D I R S GC N+ DS R+ GYE NS D+ADL+++NTC + Sbjct: 46 AKASDGTIQGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFID 105 Query: 75 KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134 A E+ L +R ++E G V+V GC+ E +I P V + GP +Y Sbjct: 106 AAVEES---LDAVREA----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYE 155 Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 + K V ++ + F L I G A+L I EGCD CTFC+ Sbjct: 156 AV-----LNHVHKYVPKPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCI 206 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KC 245 +P RG SR + V+DEA++L+++GV EI ++ Q+ +A+ GK DG K Sbjct: 207 IPALRGDLDSRGVGSVLDEAKRLVESGVQEILVVSQDTSAY-GKDKDGRTDFWNGMPVKQ 265 Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 + L L ++ VRL Y +P D LI + +++PYL LP+Q S R+LK Sbjct: 266 DITSLARQLGKMGAWVRLHYVYPYP--WVDDLIPLMAE-GLILPYLDLPLQHASPRVLKM 322 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R I + R + PD+ I S FIVGFPGET++DF +D + + + F Sbjct: 323 MKRPGRVDRQLDAIKKWREICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARLDRVGCF 382 Query: 366 KYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 KYS G + + E + E VK ER + +Q ++ ++++ VG+ +++LI+ Sbjct: 383 KYSEVDGAVANTLAELISEEVKEDRYERFMEVQAEISAERLA---RLVGRELDILIDDVD 439 Query: 423 KEK--GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 +E G+ +P + +V + + GD+++ RI L+ ELV Sbjct: 440 EEGAIGRSYADAPEIDGMVFINGETELTPGDMVRARIVASDEHDLWAELVA 490 >gi|238066632|sp|A1S2T9|RIMO_SHEAM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO Length = 474 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 144/471 (30%), Positives = 227/471 (48%), Gaps = 42/471 (8%) Query: 15 SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74 ++ D I R S GC N+ DS R+ GYE NS D+ADL+++NTC + Sbjct: 27 AKASDGTIQGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFID 86 Query: 75 KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134 A E+ L +R ++E G V+V GC+ E +I P V + GP +Y Sbjct: 87 AAVEES---LDAVREA----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYE 136 Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 + K V ++ + F L I G A+L I EGCD CTFC+ Sbjct: 137 AV-----LNHVHKYVPKPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCI 187 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KC 245 +P RG SR + V+DEA++L+++GV EI ++ Q+ +A+ GK DG K Sbjct: 188 IPALRGDLDSRGVGSVLDEAKRLVESGVQEILVVSQDTSAY-GKDKDGRTDFWNGMPVKQ 246 Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 + L L ++ VRL Y +P + A G +++PYL LP+Q S R+LK Sbjct: 247 DITSLARQLGKMGAWVRLHYVYPYPWVDDLIPLMAEG---LILPYLDLPLQHASPRVLKM 303 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R I + R + PD+ I S FIVGFPGET++DF +D + + + F Sbjct: 304 MKRPGRVDRQLDAIKKWREICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARLDRVGCF 363 Query: 366 KYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 KYS G + + E + E VK ER + +Q ++ ++++ VG+ +++LI+ Sbjct: 364 KYSEVDGAVANTLAELISEEVKEDRYERFMEVQAEISAERLA---RLVGRELDILIDDVD 420 Query: 423 KEK--GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 +E G+ +P + +V + + GD+++ RI L+ ELV Sbjct: 421 EEGAIGRSYADAPEIDGMVFINGETELTPGDMVRARIVASDEHDLWAELVA 471 >gi|260597230|ref|YP_003209801.1| ribosomal protein S12 methylthiotransferase [Cronobacter turicensis z3032] gi|260216407|emb|CBA29484.1| Ribosomal protein S12 methylthiotransferase rimO [Cronobacter turicensis z3032] Length = 441 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 139/465 (29%), Positives = 233/465 (50%), Gaps = 51/465 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ + + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 SR + V+ EA++L++ GV E+ ++ Q+ +A W G + K + L Sbjct: 166 LDSRPIGDVLAEAKRLVEAGVKELLVISQDTSAYGVDVKHRTGFWNGSPV---KTSMVSL 222 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L+++ VRL Y +P + A G + +PYL +P+Q S RILK M R Sbjct: 223 CEQLAKLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPG 279 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP Sbjct: 280 SVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPV 339 Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425 G +++ +QV E VK E R + LQ+++ +++ VG+ I V+I++ E Sbjct: 340 EGATANDLADQVPEEVKEERWNRFMALQQQISAERLQEK---VGREILVIIDEVDDEGAI 396 Query: 426 GKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 G+ + +P + +V LN + GD+++V++ + L+G LV Sbjct: 397 GRSMADAPEIDGAVYLNGETTLKPGDVVRVKVENADEYDLWGSLV 441 >gi|291519359|emb|CBK74580.1| SSU ribosomal protein S12P methylthiotransferase [Butyrivibrio fibrisolvens 16/4] Length = 442 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 131/427 (30%), Positives = 214/427 (50%), Gaps = 59/427 (13%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M +G+ + +AD+IV+NTC A E+ I+N+ Sbjct: 7 SLGCDKNLVDSEHMLGDLIEEGFTICDDEAEADIIVVNTCSFIADAMEE------SIQNI 60 Query: 91 KN-SRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE----LLER-- 142 + + KE G+L ++V GC+AQ +EIL P V+ ++G +Y L + +LE+ Sbjct: 61 IDMGQYKENGNLKGLIVTGCLAQRFTDEILADLPEVDAIIGTNSYDELLKAINIVLEKNG 120 Query: 143 ------------ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 R GKRV+ T GG+ +L I EGC+K C Sbjct: 121 EKPIIKKPLTGLPRNGKRVLTT---------------GGH------YGYLKIAEGCNKRC 159 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSD 249 T+C++PY RG S + +++ EA++L+ +GV EI L+ Q + G+D K + + Sbjct: 160 TYCIIPYIRGDYRSVPMEEILSEAKQLVADGVKEIILVAQETTVY---GMDIYNKKSLPE 216 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL L EI GL +R ++P +++D LI+ + Y+ +P+Q +D +L+ M R+ Sbjct: 217 LLNKLCEIDGLEWIRILYAYPEEITDELIECMASQPKICHYIDMPIQHCNDELLRKMGRK 276 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + I R+R PDI++ + I GFPGET++ + + + + + + +F YS Sbjct: 277 TNKADIMNIAARLREAMPDISLRTTLICGFPGETEEMHQELLQFIKDMQFDRLGAFAYSK 336 Query: 370 RLGTPGSNMLEQVDENVKA----ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 GT + QVDE++K E +LC QK + +S N+ VG+ I V IE E Sbjct: 337 EDGTVAATWDNQVDEDLKHKWQDEVMLC-QKDI---SMSNNEKYVGRTIPVFIEGKLPED 392 Query: 426 GKLVGRS 432 G +GR+ Sbjct: 393 GVFIGRT 399 >gi|148642905|ref|YP_001273418.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii ATCC 35061] gi|222445138|ref|ZP_03607653.1| hypothetical protein METSMIALI_00759 [Methanobrevibacter smithii DSM 2375] gi|148551922|gb|ABQ87050.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii ATCC 35061] gi|222434703|gb|EEE41868.1| hypothetical protein METSMIALI_00759 [Methanobrevibacter smithii DSM 2375] Length = 426 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 131/447 (29%), Positives = 232/447 (51%), Gaps = 28/447 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ +YGC N D+ M + + V+S + AD+I++NTC+++ KV + Sbjct: 2 KVYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKV---VY 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +I+ L+ ++ D V+V+GC+ + + E++ + +P + + GP + +++ Sbjct: 59 KIQQLQ----EKFPDKKVIVSGCMVEIDPEKLEKVAPDCSWI-GPHQLNKTADVVNGTYC 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G+ + + +S + K + DG + + I EGC CTFC + RG S Sbjct: 114 GRVIRECGFSKDSKVGVPKVSDGS------LIHIIQIAEGCLGACTFCCTRFARGPLNSY 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 + +V EA+K ID+G EI L Q+ A+ G D GEK SDL+ ++ + G R+R Sbjct: 168 PIKDIVAEAKKAIDDGAVEIQLTAQDTAAF---GYDSGEK--LSDLIKEVANLDGEFRVR 222 Query: 265 YTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 HP+++ D +I A V ++HLPVQ+GS+++L M R HT +Y I+ + Sbjct: 223 VGMMHPKNILNNVDEIIDAIKHPKVYN-FIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSK 281 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +S PD+ ++ D IVG+P E+D+DF+ T+DL+ I + KY R G S+ L++ Sbjct: 282 FKSEIPDLTLAVDIIVGYPTESDEDFQLTVDLLRNIKPSLIHLSKYQHRKGAVSSS-LKE 340 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + V +R L + E N VG + ++ + G KG + ++ V+++ Sbjct: 341 IPHEVMKKRSRNLSRIKTEITEEENKELVGSVQNAVVVEVG-SKGGFIAKTDSYIPVIVD 399 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 N+GD IKV+ITD + L G++V Sbjct: 400 GV--NLGDFIKVKITDATATYLKGDVV 424 >gi|267992608|gb|ACY87493.1| putative FeS oxidoreductase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] Length = 441 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 139/462 (30%), Positives = 232/462 (50%), Gaps = 45/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ + + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 226 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R + P++ + S FIVGFP ET++DF+ +D + + + FKYSP G Sbjct: 283 RQLARIKQWREICPELTLRSTFIVGFPAETEEDFQMLLDFLKEARLDRVGCFKYSPVEGA 342 Query: 374 PGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 + + +QV E VK E R + LQ+++ +++ VG+ I V++++ +E G+ Sbjct: 343 GANELPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGAIGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + V + N+ GDI++V++ + L+G V Sbjct: 400 MADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV 441 >gi|167035212|ref|YP_001670443.1| ribosomal protein S12 methylthiotransferase [Pseudomonas putida GB-1] gi|238066511|sp|B0KTL0|RIMO_PSEPG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|166861700|gb|ABZ00108.1| MiaB-like tRNA modifying enzyme YliG [Pseudomonas putida GB-1] Length = 443 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 148/474 (31%), Positives = 236/474 (49%), Gaps = 67/474 (14%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 8 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ EG I P V V GPQ Y Sbjct: 67 IGEA-------IKENGK--VIVTGCMGVEEGS-IRDVHPSVLSVTGPQQY---------- 106 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 107 ---EQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 163 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR + +V+ EA +L+ GV EI ++ Q+ +A W G+ + K Sbjct: 164 RGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPV---KTRM 220 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 +L +LS + VRL Y +P + A G ++PYL +P Q S ++LKSM Sbjct: 221 LELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKSMK 277 Query: 308 RRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 R A+E R + RI++ R P++ I S FIVGFPGET++DF+ +D + + + Sbjct: 278 R--PAFEDRTLA-RIKNWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGC 334 Query: 365 FKYSPRLGTPGSNM-LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 F+YSP G P +++ LE+V +++K E R + Q+ + ++ +G+ IEVLI++ Sbjct: 335 FQYSPVEGAPANDLGLEEVPDDIKQERWDRFMAHQQAISTARLQLR---IGKEIEVLIDE 391 Query: 421 HGKEKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +E+G VGRS P + V +H GD ++ R+ D ++ E + Sbjct: 392 V-EEQGS-VGRSFFDAPEIDGNVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPI 443 >gi|39935741|ref|NP_948017.1| ribosomal protein S12 methylthiotransferase [Rhodopseudomonas palustris CGA009] gi|81562562|sp|Q6N6E2|RIMO_RHOPA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|39649594|emb|CAE28116.1| Protein of unknown function UPF0004:Elongator protein 3/MiaB/NifB [Rhodopseudomonas palustris CGA009] Length = 441 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 142/466 (30%), Positives = 222/466 (47%), Gaps = 48/466 (10%) Query: 18 VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 + Q P+ FV S GC + DS R+ ++GYE D ADL+++NTC + A Sbjct: 1 MQQATAPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADLVIVNTCGFLDSAK 59 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 ++ + +G V+V GC+ AE E+I P V + GPQ Y + Sbjct: 60 QESLAAIGEAMATNGK---------VIVTGCMG-AEPEQIEAAYPGVLSITGPQQYESVL 109 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 E + RAR D V + RL+ A+L I EGC+ C+FC++P Sbjct: 110 EAVHRARPALHNPHLDL-VPPQGVRLTPRH---------YAYLKISEGCNNRCSFCIIPK 159 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246 RG +SR V+ EA KL+ GV E+ ++ Q+ +A W+ + + + Sbjct: 160 LRGDLVSRPAGDVLREAEKLVAAGVKELLVISQDTSAYGVDVKYAESPWKDRAV---RAK 216 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F DL L E+ VRL Y +P D +I D VL PYL +P Q S +LK M Sbjct: 217 FLDLASELGELGAWVRLHYVYPYPH--VDEVIGLMADGKVL-PYLDIPFQHASPDVLKLM 273 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + I R R PD+A+ S FIVGFPGET+ DF ++ +D+ + +FK Sbjct: 274 KRPAAQDKTLDRIKRWREQCPDLALRSTFIVGFPGETERDFEFLLEWLDEAEIDRLGAFK 333 Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 Y P G P + + +Q+ + VK E RL+ Q+ + +++ VG +V+I++ G Sbjct: 334 YEPVAGAPSNALPDQIADEVKQERWNRLMARQQAISARRLKRK---VGTRQQVIIDEIGP 390 Query: 424 --EKGKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465 KG+ +P + +V L+S+ +G+I+ +I L+G Sbjct: 391 TVAKGRSKADAPDIDGAVYLSSRRPLRVGEIVTAKIDRADAYDLHG 436 >gi|332520869|ref|ZP_08397329.1| MiaB-like tRNA modifying enzyme [Lacinutrix algicola 5H-3-7-4] gi|332043399|gb|EGI79595.1| MiaB-like tRNA modifying enzyme [Lacinutrix algicola 5H-3-7-4] Length = 440 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 123/427 (28%), Positives = 212/427 (49%), Gaps = 39/427 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F +G+ RV + AD+ V+NTC + E A + R + + Sbjct: 9 TLGCKLNFSETSTIARSFKEEGFSRVEFNETADIYVINTCSVTENADK-------RFKTI 61 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGK 147 K + V GC AQ + EE+ + V++V+G +++ + L + FG+ Sbjct: 62 VKQAQKANPEAFVAAVGCYAQLKPEELADVNG-VDLVLGATEKFKITDYLNDLTKNDFGE 120 Query: 148 ----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D D+ V G Y+ AFL +Q+GCD CT+C +P RGI Sbjct: 121 VHSCDINDADFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 169 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260 S L V++ A+++ G+ EI L G N+ + GKG G K TF +L+ +L +++G+ Sbjct: 170 SDKLDNVLNNAKEISAKGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVEALDKVEGI 228 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ P + + I+ +P+ H+P+QSG + ILK M RR+ Y + Sbjct: 229 ERLRISSIEPNLLKNETIEVVSKSRAFVPHFHIPLQSGHNDILKLMKRRYMRELYVDRVA 288 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +I+ V P I D IVGFPGETD+ F T + ++ + + F YS R T ++ Sbjct: 289 KIKEVMPHACIGVDVIVGFPGETDEHFLETYNFLNTLDISYLHVFTYSERDNTEAASFKN 348 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RS 432 V +N++++R L+ +++ ++ + +G VL E KE G + G ++ Sbjct: 349 VVPKNIRSKRSKMLRGLSAKKRRAYYEKQIGTSRSVLFEGENKE-GYIHGFTENYVKVKA 407 Query: 433 PWLQSVV 439 PW +V Sbjct: 408 PWNPELV 414 >gi|56478113|ref|YP_159702.1| ribosomal protein S12 methylthiotransferase [Aromatoleum aromaticum EbN1] gi|81357013|sp|Q5P1L3|RIMO_AROAE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|56314156|emb|CAI08801.1| radical SAM protein similar to MiaB [Aromatoleum aromaticum EbN1] Length = 443 Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 144/463 (31%), Positives = 218/463 (47%), Gaps = 52/463 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP+ FV S GC DS + ++GY+ S DDADL+V+NTC + A E+ Sbjct: 9 VPRVGFV-SLGCPKATVDSEHILTRLRAEGYDLSGSYDDADLVVVNTCGFIDAAVEESLD 67 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + E G V+V GC+ A+ + IL P V V GP + Sbjct: 68 AIGEA-------LAENGK--VIVTGCLG-AKDDVILAAHPQVLAVTGPHATDAV------ 111 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K V D F L I G A+L I EGC+ C+FC++P RG Sbjct: 112 ---VKAVHQHLPKPHDPFTDL-IPPQGIRLTPAHYAYLKISEGCNHRCSFCIIPSMRGDL 167 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR + V+ EA L+D+GV E+ ++ Q+ +A W G+ L K DL Sbjct: 168 VSRPVHDVMREAESLVDSGVKELLVISQDTSAYGVDMKYRTGFWNGRPL---KTRLIDLA 224 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L E+ VR+ Y +P + A G + +PYL +P Q S RILK+M R Sbjct: 225 KALGELGVWVRMHYVYPYPSVDELIPLMAEGKI---LPYLDVPFQHASPRILKAMKRPGN 281 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I + RS+ PD+ I S FI GFPGETD+DF + +++ + +F YSP Sbjct: 282 VENVLERIRKWRSICPDLTIRSTFITGFPGETDEDFEQLLRFLEEAQLDRVGAFAYSPVE 341 Query: 372 GTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 G + + + V + V+ E RL+ Q+ + Q++ + +G+ I VL+E+ E Sbjct: 342 GAAANLLADPVPDEVREERRMRLMDFQEDISTQRL---ERWIGRDITVLVEEVDDEGA-- 396 Query: 429 VGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465 V RS P + +V+ + G+ KVR+TD + LY Sbjct: 397 VARSGSDAPEVDGLVIIPDGDGLVPGEFAKVRVTDCDVHDLYA 439 >gi|152978089|ref|YP_001343718.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus succinogenes 130Z] gi|238065279|sp|A6VLD6|RIMO_ACTSZ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|150839812|gb|ABR73783.1| MiaB-like tRNA modifying enzyme YliG [Actinobacillus succinogenes 130Z] Length = 444 Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 137/465 (29%), Positives = 220/465 (47%), Gaps = 49/465 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP FV S GC N+ DS R+ S GY + + ++ADL+++NTC + A ++ Sbjct: 5 VPNIGFV-SLGCPKNLVDSERILTELRSDGYNIIPTYENADLVIVNTCGFIDSAVQESLE 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G V+V GC+ E + I P V + GP +Y + E Sbjct: 64 AIGEALEANGK---------VLVTGCLGAKE-DRIREVHPKVLEITGPHSYEAVME---- 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 K V Y+ +++V G A+L I EGCD CTFC++P RG Sbjct: 110 -HVHKYVPKPAYN-----PYINVVPSQGVKLTPKHYAYLKISEGCDHKCTFCIIPSLRGD 163 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCT 246 SR ++Q++DEA++L D+GV E+ ++ Q+ +A W G + T Sbjct: 164 LDSRPITQILDEAKRLADSGVKELLVVSQDTSAYSLDQSKETQNKTVFWNGIPIKNNLIT 223 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 +L +L VRL Y +P + A G + +PYL +P+Q S +ILK+M Sbjct: 224 LCQMLGTLGV---WVRLHYVYPYPHVDDLIPLMAAGKI---LPYLDIPLQHASPKILKAM 277 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + + I R + P++ + S FIVGFPGET++DF+ +D + + + FK Sbjct: 278 KRPGSVERVLERIKNWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFK 337 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK- 425 +SP G ++M +QV E VK ER + +E + +G+ +V++++ +E Sbjct: 338 FSPVDGATATDMPDQVPEEVKEERFQRFMQLQQEISAARLQQKIGKTWKVIVDEIDEEGI 397 Query: 426 -GKLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 G+ + +P + VV + IGDII VRIT L+G Sbjct: 398 IGRSMADAPEIDGVVYVDNVGQSAVRIGDIIDVRITRADEYDLWG 442 >gi|297621456|ref|YP_003709593.1| MiaB-like tRNA modifying enzyme [Waddlia chondrophila WSU 86-1044] gi|297376758|gb|ADI38588.1| MiaB-like tRNA modifying enzyme [Waddlia chondrophila WSU 86-1044] Length = 433 Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 129/448 (28%), Positives = 226/448 (50%), Gaps = 35/448 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+F V + GC+ N Y+S D GYE +DADL ++NTC + E A + Sbjct: 13 QKFRVVTLGCRTNQYESQAFRDQLLQMGYEPAEGKEDADLCIVNTCTVTESADSRSRY-- 70 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 IR L K+ ++V GC + + E+I + +V LLE+ Sbjct: 71 -EIRQLA----KKNPHAKIIVTGCSVERQPEKIEAIEGVAQLVKNADKEI----LLEKVF 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ + ++S+ N AF+ +Q+GC+ FCT+C++PY RG S Sbjct: 122 PGEDL--PEFSIR-------------NFDAHTRAFVKVQDGCNSFCTYCIIPYVRGRSRS 166 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R++ QV++E + LI NG EI L G N+ + G G D E ++L+ + + GL RLR Sbjct: 167 RTMGQVLEEVKDLIANGYKEIVLTGINIGDFDG-GAD-EPRRLAELVKEVDAVPGLERLR 224 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P ++ D +++ + +H+ +QSGS+ +LK MNR++T + + R+RS Sbjct: 225 VSSIDPDEVDDEMLETIINGKKTCRSMHIVLQSGSNVVLKRMNRKYTRQMFMDTVSRLRS 284 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 D ++D IVGFPGET+ D + T++++ ++ +A+ F YSPR T + ++V Sbjct: 285 ACSDFTFTTDVIVGFPGETERDHQETLEVLQEVQFAKVHMFPYSPRPRTRAALYSDRVSA 344 Query: 385 NVKAERLLCLQKKLR-EQQVSFN--DACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVL 440 +V R Q+ LR ++++FN + VG+ + VL E + +++ G + V++ Sbjct: 345 DVIQRR---KQEVLRLSEEIAFNLRSSYVGRRMSVLTENYDDLHTEMISGHTDNFLPVMV 401 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +I+V + + L G++V Sbjct: 402 PKAALRPNTMIEVECRENTAAALIGKVV 429 >gi|306841786|ref|ZP_07474472.1| MiaB-like tRNA modifying enzyme YliG [Brucella sp. BO2] gi|306845898|ref|ZP_07478466.1| MiaB-like tRNA modifying enzyme YliG [Brucella sp. BO1] gi|306273790|gb|EFM55628.1| MiaB-like tRNA modifying enzyme YliG [Brucella sp. BO1] gi|306288191|gb|EFM59578.1| MiaB-like tRNA modifying enzyme YliG [Brucella sp. BO2] Length = 437 Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 152/464 (32%), Positives = 225/464 (48%), Gaps = 47/464 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ S+GYE D ADL+++NTC + A ++ Sbjct: 3 APRVSFV-SLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLE 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N E G V+V GC+ AE + I R P V + GPQ Y E + Sbjct: 62 AIGLALN-------ENGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAY----ESVMN 107 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A V + D F L G R A+L I EGC C+FC++P RG Sbjct: 108 A-----VHEVAPPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDL 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251 +SR +++V+ EA KL+ GV EI ++ Q+ +A+ GLD + + F DL Sbjct: 162 VSRPINEVLREAEKLVQAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDLS 218 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L E+ VR+ Y +P + A G + +PYL +P Q S +LK+M R Sbjct: 219 RELGEMGVWVRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPAVLKNMRRPAH 275 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + + I R PD+A+ S FIVG+PGETD+DF+ +D +D+ +A FKY Sbjct: 276 QEKTSRRIQAWRETCPDLAVRSTFIVGYPGETDEDFQMLLDWLDEAKIERAGCFKYEAVK 335 Query: 372 GTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKL 428 G +++ LEQV E VK R K +QQ+S N VG+ + V+I++ GK Sbjct: 336 GAKANDLGLEQVPEEVKEARWHRFMAK--QQQISTNLLKKKVGKRLPVIIDEANGTIGKG 393 Query: 429 VGR--SPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 R +P + SV ++S+ +GDI+ V+I L+G V Sbjct: 394 RTRYDAPEIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 437 >gi|268591324|ref|ZP_06125545.1| RNA modification enzyme, MiaB-family [Providencia rettgeri DSM 1131] gi|291313300|gb|EFE53753.1| RNA modification enzyme, MiaB-family [Providencia rettgeri DSM 1131] Length = 444 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 141/468 (30%), Positives = 234/468 (50%), Gaps = 55/468 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP+ FV S GC N+ DS R+ + GY+ V S D+ADL+++NTC + A ++ Sbjct: 8 VPKIGFV-SLGCPKNLVDSERILTELRTDGYQVVPSYDNADLVIVNTCGFIDSAVQESLE 66 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N E G V+V GC+ E + I P V + GP +Y Sbjct: 67 AIGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSY--------- 107 Query: 143 ARFGKRVVDTDYSVEDKFER---LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++V++ + K E LS+V + G A+L I EGC+ CTFC++P Sbjct: 108 ----EQVLNHVHHYVPKPEHDPFLSLVPEQGVKLTPKHYAYLKISEGCNHRCTFCIIPSM 163 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG SR + V++EA++L+ +GV E+ ++ Q+ +A W G+ + K + Sbjct: 164 RGDLDSRPIGDVLNEAKRLVASGVKELLVISQDTSAYGVDVKNKTGFWDGQPV---KTSM 220 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 L L+ + VRL Y +P + A G + +PYL +P+Q S +ILK M Sbjct: 221 VGLCEQLASMGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPKILKLMK 277 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + I R R + P++ + S FIVGFPGET++DF+ +D + + + FKY Sbjct: 278 RPGAVERTLERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLLEAKLDRVGCFKY 337 Query: 368 SPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 SP G + + +QV E +K + R + LQ+++ Q++ +G+ I V+I++ E Sbjct: 338 SPVEGAKANELADQVPEEIKEDRYHRFMQLQQQISTQRLQDK---IGKEILVIIDEVDDE 394 Query: 425 K--GKLVGRSPWLQSVV-LNSKNH-NIGDIIKVRITDVKISTLYGELV 468 G+ + +P + +V LN + ++GDI+KV + L+G +V Sbjct: 395 GAIGRSMADAPEIDGMVYLNGEFEVSVGDIVKVLVEHADEYDLWGNIV 442 >gi|58582895|ref|YP_201911.1| ribosomal protein S12 methylthiotransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624755|ref|YP_452127.1| hypothetical protein XOO_3098 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|75434617|sp|Q5GXP5|RIMO_XANOR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|123739066|sp|Q2P0S4|RIMO_XANOM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|58427489|gb|AAW76526.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368695|dbj|BAE69853.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 466 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 142/461 (30%), Positives = 216/461 (46%), Gaps = 44/461 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP+ FV S GC + DS R+ +GY+ V S D AD++V+NTC + A + Sbjct: 14 VPKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLD 72 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N V+V GC+ + E+I P V V GPQ Y + E + Sbjct: 73 AIGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHA 122 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A + D F L + D G A+L I EGC+ C+FC++P RG Sbjct: 123 ALPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDL 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS--------- 253 +SR + +V+ EA +L+ GV E+ ++ Q+ +A+ G L + + D +Y Sbjct: 173 VSRPVDEVLCEAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEG 231 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LSE+ RL Y +P + A G L +PYL +P Q S RILK M R Sbjct: 232 LSELGVWTRLHYVYPYPHVDDVLPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVE 288 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + Q + R +++ P+I + S FIVGFPGETD +F + +D +D+ + +F YSP G Sbjct: 289 KTLQRVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVHGA 348 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432 + + + V E VK ERL K E +A +G + + L++ E V RS Sbjct: 349 SANALPDPVPEEVKQERLARFMAKQAEISALRLEAKIGSVQQCLVDL--IEDDIAVARSR 406 Query: 433 ---PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466 P + +V +GD++ V ITD L+G+ Sbjct: 407 ADAPEIDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 447 >gi|317154682|ref|YP_004122730.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio aespoeensis Aspo-2] gi|316944933|gb|ADU63984.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio aespoeensis Aspo-2] Length = 443 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 130/420 (30%), Positives = 206/420 (49%), Gaps = 33/420 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84 + F S GC N+ D+ R+ +++ ADL ++NTC I+ E V + L Sbjct: 10 KVFTVSLGCPKNLVDTERLLGAL-GPAMLPADTVAQADLALINTCGFIQPAVEESVAAIL 68 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +R+ +R G LV VAGC+ G+++ P V++ + + P ++ +A Sbjct: 69 DAVRDADETRESTGRRPLVAVAGCLVSRYGQDLREELPEVDLWLSTDQLHLWPVMIAQAI 128 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 R + + RLS A+L I EGC C FC +P RG S Sbjct: 129 THAR------PIPNAPRRLS--------TGPAYAYLKISEGCSHNCHFCTIPSIRGPHRS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + ++DEAR L + V EI ++GQ+ ++ G L G+ T L+ L+++ GL LR Sbjct: 175 RPVEALLDEARTLAAS-VPEIIIVGQDSTSY-GSDLGGDN-TIKHLVSGLADLPGLAWLR 231 Query: 265 YTTSHPRDMSDCLI---KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +P ++D L+ K+ GD L+PY +P+Q +L SM R A R++IDR Sbjct: 232 LMYLYPAGLTDDLLGFLKSIGD--PLLPYFDIPLQHAHPDVLASMGRPF-ARNPRKVIDR 288 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ D A+ + FIVG+PGETD+ F M V++ + F Y P GTP + + + Sbjct: 289 VRAHFSDAALRTTFIVGYPGETDEHFDHLMRFVEETRFHHLGVFPYWPEDGTPAAALPDP 348 Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQS 437 VD+ K +R L+ LQ + + ++ VGQ + VLIE E G GR+ W Q+ Sbjct: 349 VDDQTKLDRRDALMALQADISRE---IMESHVGQTLPVLIEAPSPEWPGLFTGRT-WFQA 404 >gi|253583199|ref|ZP_04860397.1| Fe-S oxidoreductase [Fusobacterium varium ATCC 27725] gi|251833771|gb|EES62334.1| Fe-S oxidoreductase [Fusobacterium varium ATCC 27725] Length = 432 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 131/452 (28%), Positives = 229/452 (50%), Gaps = 34/452 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + GC++N Y++ +++ +GY + A++ ++N+C + A K + L Sbjct: 5 KRVAFYTLGCKVNQYETESIKNQLLKKGYTETAFEEKAEIYIVNSCTVTSVADRKTRNML 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + +I G +V+V GC AQ +E+L I + V+G + +E Sbjct: 65 RRAK-----KINPRG--IVIVTGCYAQTNSKELLEMEEI-DYVIGNSDKNAIVNFIE--- 113 Query: 145 FGKRVVDTDYSVEDKFERLSI-VDGGYNRKRGVT------AFLTIQEGCDKFCTFCVVPY 197 D + +K + +I +D Y T A++ IQ+GC+ FC++C +P+ Sbjct: 114 ------DIENRTMEKVKNHNIFLDSEYTEYEFATLREMSRAYVKIQDGCNNFCSYCKIPF 167 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG SR ++ E KL++ G EI L+G N+ A+ G+ LD E F LL S+ EI Sbjct: 168 ARGKSRSRKKENIIKEIEKLVEEGFKEIILIGINLGAY-GEDLD-EGENFESLLKSILEI 225 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 L R+R + +P +SD I D LMP+LH+ +QS D +LK M R++ + + Sbjct: 226 NKLQRVRIGSVYPDKISDEFINMF-DNKKLMPHLHISLQSCDDEVLKRMRRKYGSSLIEE 284 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + +++ ++ ++D IVGFPGET++ F+ + +L++KIG++ F+YS R T S+ Sbjct: 285 RLLKLKKKVKNMEYTADVIVGFPGETEEMFQNSYNLIEKIGFSGIHIFQYSDRENTIASS 344 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 +++D VK ER L+ E +G+ + VL+E+ K G L G S Sbjct: 345 FTDKIDAKVKKERADRLEVLKSEMAKKERKKYIGKHLSVLLEE--KINGYLYGYSENYLR 402 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 V + + II D+KI++L E+++ Sbjct: 403 VKIKDNGIEVNSII-----DIKINSLEKEMLI 429 >gi|325681387|ref|ZP_08160913.1| ribosomal protein S12 methylthiotransferase RimO [Ruminococcus albus 8] gi|324106877|gb|EGC01167.1| ribosomal protein S12 methylthiotransferase RimO [Ruminococcus albus 8] Length = 443 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 131/447 (29%), Positives = 215/447 (48%), Gaps = 22/447 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D+ M +GY+ V AD++V+NTC E A ++ + L Sbjct: 9 SLGCPKNQVDAEHMLFDLKKEGYQIVADAALADVVVVNTCGFIESAKQEAIDTILEFCTL 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K +EG V+ GC+A+ +E+ + P ++ VVG + +LPE++ G+ + Sbjct: 69 K----QEGRIKAVIATGCLAERYRDEMKKEIPELDAVVGLGSNSKLPEIIRDIYRGEEQI 124 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 S D L + G A++ I EGC CT+C +P RG SR + + Sbjct: 125 CAYGSKTD----LPMEGGRIISTEPFYAYIKIAEGCSNNCTYCAIPAIRGKFRSRKMEDI 180 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 ++EAR L +NGV E+ ++ Q+ + G+ + G K +LL L +I G +R S+P Sbjct: 181 LEEARWLAENGVTELVVIAQDTTRY-GEDIYG-KSKLPELLRELCKIDGFKWIRTLYSYP 238 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 +S+ I + L+ Y+ +P+Q + +L+SMNR ++I ++R+ PDI Sbjct: 239 ERISEEFIDVLASEEKLVKYIDMPIQHCNGDVLRSMNRPGNEAFLLELISKLRARIPDIV 298 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 + + I GFPGET+ F + V +G+ + F YSP GT +M QVDE K R Sbjct: 299 LRTTLIAGFPGETEAQFEELCEFVKNVGFERLGCFAYSPEEGTKAFSMEGQVDEQTKERR 358 Query: 391 LLCLQKKLREQQV---SFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--N 441 + +REQ + +N A +G+ IEV+ E + GR +P + + + Sbjct: 359 ADII---MREQMLVADRYNQAQLGKTIEVVCEGFDRYAECYFGRGTADAPEIDGKIFFTS 415 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 K +G +KV + D L G +V Sbjct: 416 EKKVQVGQYVKVELFDTMDYDLLGTVV 442 >gi|294785210|ref|ZP_06750498.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_27] gi|294486924|gb|EFG34286.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_27] Length = 435 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 131/449 (29%), Positives = 225/449 (50%), Gaps = 40/449 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ +++ +GYE V D +D+ ++N+C + A K + L R + + Sbjct: 11 TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138 D V+V GC AQ EIL +S IVN V + Sbjct: 71 -------NPDAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ER + G + +Y E +F L + A++ IQ+GC+ FC++C +P+ Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG SR ++ E KL+++G E+ L+G +++A+ GK EK F LL + +IK Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GKDF-KEKDNFESLLEDILKIK 226 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L R+R + +P ++D I+ + + LMP+LH+ +QS D +LK+M R + + R+ Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSSLIRES 285 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + +++S ++ ++D IVGFP E + F+ T D++ +I ++ F+YS R GT SNM Sbjct: 286 LLKLKSKVKNMEFTADVIVGFPKEDETMFQNTYDVIKEIEFSGLHIFQYSDREGTIASNM 345 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 +VD K +R L +E ++ + + +EVL+E+ + G+ G S V Sbjct: 346 DGKVDAKTKKQRADRLDNLKQEMILNSRKKYLEKSLEVLVEEE--KDGEYFGYSQNYLRV 403 Query: 439 VLNSKNHN-IGDIIKVRITDVKISTLYGE 466 S N + +I V+I VK L E Sbjct: 404 KFKSNEKNLVNKLINVKIKCVKNDILIAE 432 >gi|255532825|ref|YP_003093197.1| MiaB-like tRNA modifying enzyme [Pedobacter heparinus DSM 2366] gi|255345809|gb|ACU05135.1| MiaB-like tRNA modifying enzyme [Pedobacter heparinus DSM 2366] Length = 439 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 116/393 (29%), Positives = 201/393 (51%), Gaps = 12/393 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + +F GY V+ D AD+ V+NTC + E A +K R + Sbjct: 8 TLGCKLNFSETSTIGRLFTDAGYAVVDFTDGADVYVINTCSVTEHADKKC-------RKV 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K V + GC AQ + EI V++V+G +R+ E + + V Sbjct: 61 VKEALKYAPHAYVTIVGCYAQLKPAEIAEIEG-VDMVLGAAEKFRIVEFISDLTKQPKAV 119 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 ++E +R R FL +Q+GCD CT+C +P RG S ++ V Sbjct: 120 VHQQNIEKVNHNFIAAYSIGDRTR---TFLKVQDGCDYPCTYCTIPLARGGSRSDTIENV 176 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 ++ AR++ ++GV EI L G N+ + + + E F DL+ +L E++G+ R+R ++ P Sbjct: 177 INRARQIAESGVKEIVLTGVNLGDFGIRNGERED-KFFDLVKALDEVEGIERIRISSIEP 235 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 +S+ +++ +P+ H+P+QSGS++IL M RR+ Y + + +I++V P+ Sbjct: 236 NLLSNEIVEFVATSKRFVPHFHIPLQSGSNKILGLMRRRYQRELYTERVAKIKAVMPNCC 295 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I D IVGFPGET +DF T ++++ + F YS R T + M +V + +AER Sbjct: 296 IGVDVIVGFPGETQEDFLDTYQFLNELDISYLHVFTYSEREQTAAAEMKGRVAGSTRAER 355 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 L +++ +F + +G + EVL E K Sbjct: 356 SKMLHILSDKKRRAFYQSQIGTVGEVLFEDDQK 388 >gi|296122454|ref|YP_003630232.1| RNA modification enzyme, MiaB family [Planctomyces limnophilus DSM 3776] gi|296014794|gb|ADG68033.1| RNA modification enzyme, MiaB family [Planctomyces limnophilus DSM 3776] Length = 440 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 127/441 (28%), Positives = 213/441 (48%), Gaps = 32/441 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ +++ GY VN + ADL +NTC + R R + Sbjct: 20 TLGCKVNQYETQLVKEALARHGYREVNEHEIADLCFVNTCTVTANGE-------SRSRQV 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K +V GC E R+ P V+ VV + LP++L+R +G VV Sbjct: 73 VRQLAKSNPGTRTIVVGC-GVTRSPESFRQLPSVHEVVTDRR--ELPDVLQR--YG--VV 125 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + +E +FE RKR A++ +Q+GC CT+C++P R ISR + Sbjct: 126 EFPRGIE-RFE---------GRKR---AYVKVQDGCALRCTYCIIPQVRPHLISREPEDI 172 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 E R+LI NG EI L G ++ + R + + L+ L +I G R+R + Sbjct: 173 EREVRQLIANGYQEIILTGVHIGHYGVDLRRRTAGAPRIRLWHLIDRLDKIAGHWRMRLS 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + +M+D I + + L P H +QSGS+ +L M RR+T ++ I+D+++ Sbjct: 233 SIEAAEMTDEFISSVSSAEHLCPQFHPALQSGSNAVLSRMRRRYTKEKFIDIVDQLKEAL 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P S+D IVGFPGETD++F T+D+ +G+ + +F +S R GTP + ++V +V Sbjct: 293 PHPGFSTDVIVGFPGETDEEFAETLDVCQNVGFTKIHAFSFSAREGTPAATFPDRVHGHV 352 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNH 445 R+ L+ + SF + G IEV++E H +VG V+L Sbjct: 353 INARIKALEDLELQLVQSFGENLKGSRIEVMVESIHPDHPDLVVGTDERYCPVILAGNAS 412 Query: 446 NIGDIIKVRITDVKISTLYGE 466 ++G + + + V+ L+G+ Sbjct: 413 DLGQLRETLVIGVRQGMLWGQ 433 >gi|225574860|ref|ZP_03783470.1| hypothetical protein RUMHYD_02938 [Blautia hydrogenotrophica DSM 10507] gi|225037934|gb|EEG48180.1| hypothetical protein RUMHYD_02938 [Blautia hydrogenotrophica DSM 10507] Length = 447 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 127/431 (29%), Positives = 232/431 (53%), Gaps = 28/431 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y+ M+ + GY+ V AD+ ++NTC + A K L R + + Sbjct: 17 GCKVNAYELEAMQQILEKAGYQVVPFAPGADVYIINTCTVTNIADRKSRQMLHRAKKM-- 74 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGKRV 149 + +VV AGC QA+ + + S I +++VG + LLE ++R GK+ Sbjct: 75 -----NPEAVVVAAGCYVQADLPRLEKDSAI-DLIVGNNKKKDIVSLLEAYDKSR-GKQE 127 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + + ++E L I + V A++ +Q+GC++FCT+C++PYTRG SRS + Sbjct: 128 CVININQTKEYEALEIETTAEH----VRAYIKVQDGCNQFCTYCIIPYTRGRVRSRSKDE 183 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 V E +L + G E+ L G +++++ G + + DL+ ++ ++ G+ R+R ++ Sbjct: 184 VQKEVVRLANRGYHEVVLTGIHLSSY-GVDFKEQPDSLLDLIRAIHQVDGITRIRLSSLE 242 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P +++ +K +L + P+ HL +QSG L+ MNRR+TA EYR+ + +R + Sbjct: 243 PGVITEEFVKGLAELWKVCPHFHLSLQSGCQTTLERMNRRYTAQEYREKCELLRRYYENP 302 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 A+++D IVGFP ET+++F + + V I + + FK+S R GT M QV E KA Sbjct: 303 ALTTDVIVGFPQETEEEFEESYEFVRDIRFYETHIFKFSRRKGTKADKMDGQVPEQEKAR 362 Query: 390 RLLCL----QKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRS-PWLQSVVLNS 442 R C+ +++ E + SF +G+ +EVL+E+ G+ L+G S ++++ V + Sbjct: 363 RSGCMIALGERRAEEYEKSF----LGKTLEVLLEEEISVDGQLYLIGHSREYIKAAVPSD 418 Query: 443 KNHNIGDIIKV 453 + + D +++ Sbjct: 419 GSWKVNDCVQM 429 >gi|53729279|ref|ZP_00133809.2| COG0621: 2-methylthioadenine synthetase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209100|ref|YP_001054325.1| hypothetical protein APL_1636 [Actinobacillus pleuropneumoniae L20] gi|307250930|ref|ZP_07532857.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|238065276|sp|A3N2T4|RIMO_ACTP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|126097892|gb|ABN74720.1| hypothetical protein APL_1636 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306857062|gb|EFM89191.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 443 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 132/459 (28%), Positives = 224/459 (48%), Gaps = 52/459 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ + GY + S ++ADL+++NTC + A ++ +G Sbjct: 11 SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E + I P V + GP +Y + + ++ R Sbjct: 67 ---ALEENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV--MKHVHKYVPRPE 118 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y+ + + + Y A+L I EGCD CTFC++P RG SR + QV Sbjct: 119 RNIYTSLVPAQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMRGDLDSRPIVQV 171 Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255 +DEA++L D+GV E+ ++ Q+ +A W G + T + L SL Sbjct: 172 LDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGAPIKNNLITLCEQLGSLG 231 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 VRL Y +P + A G + +PYL +P+Q S ++LK+M R Sbjct: 232 ---IWVRLHYVYPYPHVDDLIPLMAQGKI---LPYLDIPLQHASPKVLKAMKRPGAIDRT 285 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + I + R + P + + S FIVGFPGET++DF+ +D +++ + FK+SP G Sbjct: 286 LERIKKWREICPKLTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFSPVEGAVA 345 Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430 + M +QV E+VK E R + +Q+++ ++ VG+ + V+I++ +E G+ + Sbjct: 346 TEMADQVPEDVKEERFHRFMQVQQRISAARLQQK---VGKTLAVIIDEIDEEGIIGRSMA 402 Query: 431 RSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 +P + VV L+ + +G +I V IT+ L+G Sbjct: 403 DAPEIDGVVYVDNLSEQEVKVGQVISVSITNADEYDLWG 441 >gi|46447397|ref|YP_008762.1| putative 2-methylthioadenine synthetase [Candidatus Protochlamydia amoebophila UWE25] gi|46401038|emb|CAF24487.1| putative 2-methylthioadenine synthetase [Candidatus Protochlamydia amoebophila UWE25] Length = 434 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 114/358 (31%), Positives = 187/358 (52%), Gaps = 27/358 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F + + GC+ N Y+S ++ GY+ + AD+ ++NTC + E A S Sbjct: 7 KFKIITLGCRTNQYESQAYQNQLLRMGYQEAKEGEKADICIVNTCTVTESADS---SSRH 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 IR L +R +G LLV AGC A+ + E I + + +V+ + L L + Sbjct: 64 AIRQL--ARENQGTQLLV--AGCFAERQPEVIQKIDGVTHVIPNREKEQLLARLFPK--- 116 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + SI + + AF+ +Q+GC+ FCT+C++PY RG SR Sbjct: 117 ------------ENLPEFSITQFDSHTR----AFIKVQDGCNSFCTYCIIPYVRGRSRSR 160 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLR 264 S+ +V++EA+ LI NG EI L G N+ + GK GE S+L+ + ++ GL RLR Sbjct: 161 SVEEVLEEAKALISNGYKEIVLTGINIGDFDGKVAKGETPVRLSELVRMVDQLPGLERLR 220 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P ++ D L A + +H+ +QSGS+ ILK MNR++T + ID++++ Sbjct: 221 LSSIDPDEVDDELSDAILNGKHTCHSMHIVLQSGSNVILKRMNRKYTRQIFLDTIDKLKA 280 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 D ++D IVGFPGETD DF+ T++++ + +A+ F YS R T + M +V Sbjct: 281 AHSDFTFTTDIIVGFPGETDLDFQDTIEVMKHVKFAKVHMFPYSDRPRTRSNLMPNKV 338 >gi|302671973|ref|YP_003831933.1| MiaB-like tRNA modifying enzyme [Butyrivibrio proteoclasticus B316] gi|302396446|gb|ADL35351.1| MiaB-like tRNA modifying enzyme [Butyrivibrio proteoclasticus B316] Length = 454 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 120/413 (29%), Positives = 216/413 (52%), Gaps = 28/413 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + + GC++N Y+ M G V + AD+ ++NTC + A K L Sbjct: 13 RVAMHNLGCKVNSYEMDVMSIRLKEAGCIIVPFTEKADIYIINTCTVTNIADRKSRQMLH 72 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL----- 140 + + KE D +VV GC + G + +++ V++ VG + ++L Sbjct: 73 KAK-------KENPDSIVVAVGCYVET-GIDGVKKDDCVDLAVGNNKKSEIVDILNTFLE 124 Query: 141 ------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 ++ G ++D +++ +++E + + + + + A++ IQ+GC++FC++CV Sbjct: 125 ARGEYDDKTLGGNSIIDINHT--NEYENMQLSEMPEHTR----AYIKIQDGCNQFCSYCV 178 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 +PY RG SR +S+++ E L+ G E+ L G ++ ++ GLD + DL+ + Sbjct: 179 IPYARGRVRSREMSEILTEIEGLVQKGCKEVVLTGIHIGSY---GLDKGEPMLVDLVEKI 235 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 ++I G+ R+R + PR ++ + +D L P+ HL +QSG D +LK MNR +TA E Sbjct: 236 ADISGIDRIRLGSIEPRLITAENTRRLAAIDKLCPHFHLSLQSGCDTVLKRMNRHYTASE 295 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + + + +R AI++D IVGFPGET+++F V+KI + + FKYSPR GT Sbjct: 296 FEESVRLLREAFDRPAITTDVIVGFPGETEEEFEECRAFVEKIDFYEMHVFKYSPRKGTV 355 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 + M EQ+ + K R L K +EQ + ++ +G+ ++VL E + GK Sbjct: 356 AAGMKEQLTDREKTVRSDVLLKLTKEQSKLYRESFIGEKVDVLWEDSEEINGK 408 >gi|197286995|ref|YP_002152867.1| ribosomal protein S12 methylthiotransferase [Proteus mirabilis HI4320] gi|227354764|ref|ZP_03839181.1| 2-methylthioadenine synthetase [Proteus mirabilis ATCC 29906] gi|238066464|sp|B4F137|RIMO_PROMH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|194684482|emb|CAR46244.1| conserved hypothetical protein [Proteus mirabilis HI4320] gi|227165082|gb|EEI49913.1| 2-methylthioadenine synthetase [Proteus mirabilis ATCC 29906] Length = 443 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 132/464 (28%), Positives = 233/464 (50%), Gaps = 47/464 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP+ FV S GC N+ DS R+ ++GY+ V + DDADL+++NTC + A ++ Sbjct: 7 VPKIGFV-SLGCPKNLVDSERILTELRTEGYQVVPTYDDADLVIVNTCGFIDSAVQESLE 65 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + E G V+V GC+ E + I P V + GP +Y ++ Sbjct: 66 AIGEA-------LDENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQV-----L 110 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V + + F L + + G A+L I EGC+ CTFC++P RG Sbjct: 111 SHIHHYVPKPSH---NPFTSL-VPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDL 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 SR + +V++EA++L++ GV E+ ++ Q+ +A W G + K + L Sbjct: 167 DSRPIGEVLNEAKRLVNAGVKELLVISQDTSAYGVDTKHQTGFWDGMPV---KTSMVSLC 223 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L+++ VRL Y +P + A G + +PYL +P+Q S ++LK M R + Sbjct: 224 EQLAKLGIWVRLHYVYPYPHVDEVIPLMAEGKI---LPYLDIPLQHASPKVLKLMKRPGS 280 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + + R R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP Sbjct: 281 VERTLERVKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLTEARLDRVGCFKYSPVE 340 Query: 372 GTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426 G + + +QV E VK E R + LQ+++ +++ +G+++ V+I++ +E G Sbjct: 341 GAKANELPDQVPEEVKEERYHRFMQLQQQISTERLQEK---IGKVLPVIIDEVDEEGAIG 397 Query: 427 KLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + + +P + V ++ ++ G I++V I L+G +V Sbjct: 398 RSMADAPEIDGAVYLNEQFDVEPGQIVRVLIEHADEYDLWGTIV 441 >gi|86749957|ref|YP_486453.1| hypothetical protein RPB_2840 [Rhodopseudomonas palustris HaA2] gi|123292522|sp|Q2IW68|RIMO_RHOP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|86572985|gb|ABD07542.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 441 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 141/466 (30%), Positives = 223/466 (47%), Gaps = 48/466 (10%) Query: 18 VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 + Q P+ FV S GC + DS R+ ++GYE D ADL+++NTC + A Sbjct: 1 MQQAAAPKISFV-SLGCPKALVDSERIITRLRAEGYELARQHDGADLVIVNTCGFLDSAK 59 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 ++ + +G V+V GC+ AE E+I P V + GPQ Y + Sbjct: 60 QESLAAIGEAMAANGK---------VIVTGCMG-AEPEQIEAAYPGVLSITGPQQYESVL 109 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 + + RA+ D E + + + Y A+L I EGC+ C+FC++P Sbjct: 110 DAVHRAKPALHNPHLDLVPE---QGIRLTPRHY-------AYLKISEGCNNRCSFCIIPK 159 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246 RG SRS + V+ EA KL+ GV E+ ++ Q+ +A W+ + + + Sbjct: 160 LRGDLASRSAADVLREAEKLVAAGVKELLVISQDTSAYGVDLKYAESPWKDRSV---RAK 216 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F DL L E+ VRL Y +P D +I + VL PYL +P Q S +LK M Sbjct: 217 FIDLARELGELGAWVRLHYVYPYPH--VDEVIGLMTEGKVL-PYLDIPFQHASPDVLKLM 273 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + + I R R+ PD+A+ S FIVGFPGET+ DF +D +D+ + +FK Sbjct: 274 KRPAAQDKTLERIKRWRAQCPDLALRSTFIVGFPGETERDFEFLLDWLDEAEIDRLGAFK 333 Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 Y P G P + + QV + VK E RL+ Q+ + +++ VG +++I++ G Sbjct: 334 YEPVAGAPSNALEGQVPDEVKQERWNRLMARQQAISARRLKRK---VGTRQQIIIDEIGP 390 Query: 424 --EKGKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465 KG+ +P + SV L S+ +G+I+ +I L+G Sbjct: 391 TVAKGRSKADAPEIDGSVYLTSRRPLRVGEIVTAKIDRADAYDLHG 436 >gi|114571391|ref|YP_758071.1| MiaB-like tRNA modifying protein [Maricaulis maris MCS10] gi|114341853|gb|ABI67133.1| MiaB-like tRNA modifying enzyme [Maricaulis maris MCS10] Length = 444 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 128/396 (32%), Positives = 196/396 (49%), Gaps = 28/396 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N ++S M QG + I++NTC + +A + + R R Sbjct: 31 TFGCRLNAWESEVMRKHARDQGL--------TNTILVNTCAVTNEAVRQARQNIRRAR-- 80 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---K 147 ++ D ++V GC AQ + ++ R P VN V+G + G K Sbjct: 81 -----RDNPDAQIIVTGCAAQVD-PDMFGRMPEVNRVIGNDDKLKAETFKPADLLGGTEK 134 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 V+ SV + L V+G R R A++ +Q GCD CTFC++PY RG S Sbjct: 135 VRVNDIMSVTETAGHL--VEGMEGRAR---AYVQVQNGCDHRCTFCIIPYGRGNSRSVGA 189 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRYT 266 +VVD+ + L+D+G E+ L G ++ +W G+ L G K L+ S L + L RLR + Sbjct: 190 GEVVDQIKTLVDSGHSEVVLTGVDLTSW-GEDLPG-KPPLGRLVQSILKHVPDLPRLRLS 247 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + ++ + L +A + PYLHL +Q+G D ILK M RRH + + +R++S R Sbjct: 248 SIDAIEIDEALFEAVTGETRIAPYLHLSLQAGDDMILKRMKRRHLRDDAIALCERLKSAR 307 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P+IA +D I GFP ETD F ++ LVD+ A F YSPR GTP + M Q++ V Sbjct: 308 PEIAFGADMIAGFPTETDAMFENSIRLVDECRLAYLHVFPYSPRPGTPAARM-PQLERAV 366 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 +R L+ K E D +G L+EK G Sbjct: 367 IKDRANRLRAKADEALSRHLDGMIGLERAALVEKPG 402 >gi|148654700|ref|YP_001274905.1| MiaB-like tRNA modifying protein YliG [Roseiflexus sp. RS-1] gi|238066581|sp|A5UQQ2|RIMO_ROSS1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|148566810|gb|ABQ88955.1| MiaB-like tRNA modifying enzyme YliG [Roseiflexus sp. RS-1] Length = 472 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 141/472 (29%), Positives = 236/472 (50%), Gaps = 43/472 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F + + GC N DS M + +QG+ V DDAD++V+NTC A E+ L Sbjct: 2 KFHIITLGCPKNQVDSEGMSSILAAQGHTPVAHADDADVVVVNTCSFIAAAREETLDVLR 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--- 142 + K G LV AGC+A++ ++ +P V+ ++ + + R+ ++++ Sbjct: 62 EVAARKTP-----GQYLVA-AGCMAESH-SALVAAAPGVDALLSTREWMRIGDVVDTLQR 114 Query: 143 -----ARFGKRVVDTDYSVEDKFERLSIVDGGYN-------RKR--GVTAFLTIQEGCDK 188 A R + S + L V G Y R+R G +A+L I +GC+ Sbjct: 115 EPAVAASSAAREIIPLSSAPASSDDLR-VPGAYADWRTAPIRRRITGPSAYLKISDGCNL 173 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCT 246 C FC +P +G S+++ ++ EA++L D GV EI L+ Q++ + R GL DG Sbjct: 174 RCAFCTIPSFKGDMRSKAVGAILGEAQELADAGVKEIVLVAQHLTDYGRDLGLKDGLALL 233 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 +L L + + VRL Y ++P +S+ LI + YL +P+Q L+ M Sbjct: 234 LDELCAVLPKDR-WVRLMY--AYPHGISERLIATMARHPQICHYLDMPLQHAHPETLRRM 290 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 +R + R++I +R+ PDIA+ S FI+GFPGET +FRA ++++ + + F+ Sbjct: 291 HRPPDSDRTRRLIADLRAAMPDIALRSTFIIGFPGETSAEFRALTAFLEEVQFDRVGVFR 350 Query: 367 YSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 YS GTP + + +Q+ + V R ++ LQ+ + Q+ N VG++I VL+E G+ Sbjct: 351 YSREPGTPAAALPDQIPQRVIERRWHTIMRLQQGISRQR---NRRWVGRVIRVLVEGQGQ 407 Query: 424 -EKGKL--VGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + G+L VGRS P + VL G + VR+T L+GE+V Sbjct: 408 TDDGRLLSVGRSFRDAPEVDGQVLFWGTAATGTFVDVRVTQALDYDLWGEMV 459 >gi|240104185|ref|YP_002960494.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus gammatolerans EJ3] gi|239911739|gb|ACS34630.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus gammatolerans EJ3] Length = 424 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 134/444 (30%), Positives = 225/444 (50%), Gaps = 27/444 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R +V+SYGC N D ME + GYE D AD +V+NTC +++ K+ + Sbjct: 3 RVYVESYGCSRNRADGEIMEAILLRAGYELAEGPDKADYVVVNTCAVKDPTELKM---VR 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIR L +S K V+ GC+ E I P V+ ++G ++ R+ E + A Sbjct: 60 RIRELLDSGKK------VIATGCLVHVNPEAI---DPRVSGILGVKSIDRIAEAISVAER 110 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G++++ + E ++L + K GV+ + I EGC CT+C + RG+ S Sbjct: 111 GEKLISVEGWRERNPDKLELPR---LWKPGVSFVVPISEGCLNACTYCATRFARGVLKSY 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 V+ R+ + G EI L ++ + G D ++LL ++ I+G R+R Sbjct: 168 KPELVIKWVREAVSRGYREIILSSEDTGCY---GFD-IGTNLAELLDEITAIEGDFRVRV 223 Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +P + D LI+A+ D + + +LHLPVQSG + IL+ M R +T E+ +I++ Sbjct: 224 GMMNPNHVLKFLDELIEAYQD-EKIYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVNAF 282 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PD+ +++D IVGFPGE+D+ FR T++LV ++ + +YS R GT + +Q+ Sbjct: 283 RKKIPDLNLNTDIIVGFPGESDEAFRNTVELVKRVKPDKINVSRYSARPGTIAARW-KQL 341 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 + ER L + N A VG+ +EVL+ GK KG + GR+ + ++L+S Sbjct: 342 PGWLVKERSRELHRLRLAIAYEINRAYVGRTVEVLVHGPGK-KGGIEGRTFNYKDIILDS 400 Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466 G ++V++ + L G+ Sbjct: 401 --GEAGGFVRVKVERATATYLLGK 422 >gi|162148088|ref|YP_001602549.1| hypothetical protein GDI_2305 [Gluconacetobacter diazotrophicus PAl 5] gi|209542702|ref|YP_002274931.1| MiaB-like tRNA modifying enzyme [Gluconacetobacter diazotrophicus PAl 5] gi|161786665|emb|CAP56248.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] gi|209530379|gb|ACI50316.1| MiaB-like tRNA modifying enzyme [Gluconacetobacter diazotrophicus PAl 5] Length = 420 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 135/444 (30%), Positives = 211/444 (47%), Gaps = 38/444 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI- 87 + ++GC++N Y+S M +G+ ++DD +I++NTC + +A + + R Sbjct: 7 ILTFGCRLNTYESEVM------RGH--AAALDD--VIIVNTCAVTAEAERQARQAIRRAH 56 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 R+ +RI VV GC AQ + + P V V+G + E LE A + Sbjct: 57 RDRPGARI--------VVTGCAAQIDPDR-WSALPGVTRVLGNR------EKLEAASWTP 101 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + ++V D V G T AF+ +Q+GCD CTFC++P+ RG S Sbjct: 102 AAMQDGHAVSDIMAATETVPHLVTEFAGRTRAFVEVQQGCDHRCTFCIIPFGRGPSRSVP 161 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + VV++ R L+ +G EI L G ++ +W G L G L+ + L RLR + Sbjct: 162 VGAVVEQVRALVASGYREIVLTGVDITSW-GGDLPGRPALGQLCRRVLALVPELERLRLS 220 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P ++ D L + MPYLHL +Q+GSD +LK M RRH + +++DR R+ R Sbjct: 221 SVDPVEIDDDLWRLLAQEGRFMPYLHLSLQAGSDMVLKRMKRRHLVEDVARVLDRARACR 280 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD+ I +D I GFP ETD F T+D V F YS R GTP + M V V Sbjct: 281 PDLGIGADVIAGFPTETDALFAETLDFVRAQRLPYLHVFPYSERPGTPAARM-PAVPVAV 339 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----HGKEKGKLVGRSPWLQSVVLNS 442 + ER L+ + ++ + +G+ + VL+E H +E + L L+ Sbjct: 340 RKERAAQLRAAGQAAARDYHASLLGRTLNVLLETATTGHSEEFAPVR-----LAPDRLDG 394 Query: 443 KNHNIGDIIKVRITDVKISTLYGE 466 G I+ VR T + + L E Sbjct: 395 TAAEAGRIVTVRATAIDENGLVAE 418 >gi|317401271|gb|EFV81912.1| hypothetical protein HMPREF0005_01131 [Achromobacter xylosoxidans C54] Length = 438 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 145/468 (30%), Positives = 228/468 (48%), Gaps = 56/468 (11%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GY+ +DAD++V+NTC + A + Sbjct: 4 PKVGFV-SLGCPKALVDSERILTQLRTEGYQVTPEYNDADVVVVNTCGFIDSAKAESLEA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLER 142 +G + E G V+V GC+ E ++R P V V GPQ Y E + R Sbjct: 63 IGEA-------LAENGK--VIVTGCMGVEES--VIRNVHPSVLAVTGPQQY----EEVVR 107 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A V D +D L +V G A+L I EGC+ C+FC++P RG Sbjct: 108 A-----VHDAAPPKKDHNPYLDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGD 162 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +SR + V+ EA +L+ GV E+ ++ Q+ +A W G+ + + ++L Sbjct: 163 LVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDVKYRSGFWNGRPV---RTRMTEL 219 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +LSE+ RL Y +P + A G + +PYL +P Q S RILK+M R Sbjct: 220 CTALSEMGVWTRLHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPRILKAMKR-- 274 Query: 311 TAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 A+E + + I + R PD+ I S FIVGFPGET++DF+ +D + + + F+YS Sbjct: 275 PAFEDKTLARIKQWRETCPDLTIRSTFIVGFPGETEEDFQYLLDWMQEAQLDRVGCFQYS 334 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGKE 424 P G P + + V + VK ER ++ E Q S + A VG+ IEVLI++ + Sbjct: 335 PVEGAPANLLDNPVPDEVKQERW----ERFMEMQQSISTARLARKVGREIEVLIDEVDDD 390 Query: 425 K--GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 G+ G +P + V S + + GD+++ R+TD L+ + V Sbjct: 391 GAVGRSAGDAPEIDGCVYVSSDRKLKAGDLVRARVTDSDEYDLWADTV 438 >gi|257467023|ref|ZP_05631334.1| hypothetical protein FgonA2_06247 [Fusobacterium gonidiaformans ATCC 25563] gi|315918160|ref|ZP_07914400.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans ATCC 25563] gi|313692035|gb|EFS28870.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans ATCC 25563] Length = 444 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 128/441 (29%), Positives = 227/441 (51%), Gaps = 32/441 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 F + S GC N+ DS + + + +G++ N +++ADL+++NTC A ++ + Sbjct: 3 FALISLGCSKNLVDSENLTGILVNRKGFQLTNEIEEADLVLINTCGFIGDAKKESIETIL 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + K R+K+ +VV GC+AQ EE+L+ P ++ V+G ++ +++ Sbjct: 63 EVAEYKQERLKK-----IVVCGCLAQRYAEELLQEIPEIDAVIGTGEIDKIESVVDEILQ 117 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIE 202 K+ V+T F L D +R TA+L I EGC++ CT+C++P RG Sbjct: 118 DKKAVETS-----SFHFLPNADT--DRVLTTPPHTAYLKISEGCNRRCTYCIIPQLRGDL 170 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLV 261 SR+ +++EA++L+ GV E+ LL Q + G+D K DLL L +I+GL Sbjct: 171 RSRTKEDILEEAKRLVSGGVRELNLLAQETTEY---GIDNYGKKALPDLLRELVKIEGLD 227 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R PR ++D LI+ + + Y +P+Q S +L+ M R T + ++++ + Sbjct: 228 WIRTYYMFPRSITDELIEVMKQEEKICKYFDIPIQHISSNMLRRMGRAITGEQTKELLYK 287 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR P+ + IVGFPGET+++F+ D V++ + F+YS T M Q Sbjct: 288 IRKEIPEAVFRTSLIVGFPGETEEEFQELKDFVEEFQFDYIGVFQYSREEDTVAYTMENQ 347 Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSP 433 + E VK R L+ LQ ++ E S N +G+ +EVLI+ E +G+L ++ Sbjct: 348 IPEEVKERRQAELINLQNEIAE---SKNRKLLGREVEVLIDGISSESEYMLEGRLKTQAL 404 Query: 434 WLQSVVLNSK-NHNIGDIIKV 453 + VL S+ +G+++++ Sbjct: 405 DIDGKVLTSEGTAQVGEMVRI 425 >gi|217967846|ref|YP_002353352.1| MiaB-like tRNA modifying enzyme YliG [Dictyoglomus turgidum DSM 6724] gi|217336945|gb|ACK42738.1| MiaB-like tRNA modifying enzyme YliG [Dictyoglomus turgidum DSM 6724] Length = 440 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 133/452 (29%), Positives = 223/452 (49%), Gaps = 37/452 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA---AEKVYSFLGRIRN 89 GC N D+ + + GY ++ADLI++NTC + A AE+ S L + + Sbjct: 10 GCSKNQVDTEVLMGFLKNLGYTFTPHSEEADLILVNTCAFIKPAWQEAEENISLLEKYKK 69 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + +L +VV GC + EE+ + P V++ +GP Y + L+ GKR Sbjct: 70 INE-------NLKIVVVGCYVERFKEELENKYPFVDLFIGPGEYEKFVSLITSN--GKRG 120 Query: 150 V----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + + K R+ I + ++ I EGC+ FC++C +P+ RG SR Sbjct: 121 IYSSPASSFIYNHKMPRILISPNFW-------VYVKIAEGCNNFCSYCTIPFIRGRLRSR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S+ +V E I GV E+ L+ Q+ + G+ L G + + DLL ++ +I+G +R Sbjct: 174 SIEDIVKEIEIWIGKGVKEVNLIAQDTTRY-GEDLYG-RPSLVDLLRNIEKIRGDFYVRI 231 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 S+P +S+ LI+A + + ++PY +P+Q SD ILK MNR + + ++ RI+ Sbjct: 232 LYSYPSRISEKLIEAIKNSEKVVPYFDIPIQHVSDVILKRMNRSYKKDDIIKLWHRIKEN 291 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 + I + +VGFPGET+++F +D + K + + +F Y GT QVDE+ Sbjct: 292 FENAVIRTTVMVGFPGETEENFEELIDFIKKYPFDRLGAFIYYNENGTISKGFENQVDED 351 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRS----PWLQSVVL 440 K R L + ++ N +G+ +V+IE EKGK VGRS P + +++ Sbjct: 352 EKLRRYEILMETQKKISKKLNAKLLGKEFDVIIE---DEKGKYFVGRSWREAPEVDGLIM 408 Query: 441 ----NSKNHNIGDIIKVRITDVKISTLYGELV 468 K IG ++V+I + L GELV Sbjct: 409 IPKEKEKTLKIGSKVRVKIKKYRSYDLLGELV 440 >gi|281412050|ref|YP_003346129.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga naphthophila RKU-10] gi|281373153|gb|ADA66715.1| MiaB-like tRNA modifying enzyme YliG [Thermotoga naphthophila RKU-10] Length = 430 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 137/452 (30%), Positives = 225/452 (49%), Gaps = 38/452 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA----EKVY 81 R +K GC N D + + G+E V + DAD++VL+TC E A ++++ Sbjct: 2 RVGIKVLGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIF 61 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 SF+ K+ +VV GC+ Q EE+ + P V+ +G + LE Sbjct: 62 SFVD---------AKDQYSYKLVVKGCLVQRYYEELKKEIPEVDQWIGVVDPEEIANALE 112 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + V + +V +R+ + + Y A++ I +GCD+ CTFC +P +G Sbjct: 113 KGT--DLVPNRPETVYRYRKRIDLEERPY-------AYVKISDGCDRGCTFCSIPSFKGS 163 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 SRS+ + E L+ G EI L+ Q+ ++ G+D K DLL L+ + G Sbjct: 164 LRSRSIEDITHEVEDLLKEGKKEIILVAQDTTSY---GIDLYRKQALPDLLRRLNSLNGE 220 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R HP +++ +I A +LD ++ Y +PVQ GSD+ILK M R ++ E ++++ Sbjct: 221 FWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLS 280 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR PD + + IVGFPGET++DF V++I + + +F YS GT N+ E Sbjct: 281 SIRERFPDAVLRTSIIVGFPGETEEDFEELKRFVEEIQFDKLGAFVYSDEEGTVAFNLKE 340 Query: 381 QVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----P 433 +VD V + E LL LQ ++ ++ D +G+ ++ L+E GKE LVGR+ P Sbjct: 341 KVDPEVAKRRQEELLLLQAEISNSRL---DRFIGRKLKFLVE--GKEGKFLVGRTWTEAP 395 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 + VV IGD ++V I + ++G Sbjct: 396 EVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWG 427 >gi|77457418|ref|YP_346923.1| hypothetical protein Pfl01_1191 [Pseudomonas fluorescens Pf0-1] gi|123758469|sp|Q3KH22|RIMO_PSEPF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|77381421|gb|ABA72934.1| SSU ribosomal protein S12P methylthiotransferase [Pseudomonas fluorescens Pf0-1] Length = 445 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 143/471 (30%), Positives = 232/471 (49%), Gaps = 61/471 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V++ DAD++V+NTC + A + Sbjct: 10 PKVGFV-SLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEV 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ EG I P V V GPQ Y Sbjct: 69 IGE-------AIKENGK--VIVTGCMGVEEGN-IRDVHPSVLAVTGPQQY---------- 108 Query: 144 RFGKRVVDTDYSV-EDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V K + ++D G A+L I EGC+ C+FC++P Sbjct: 109 ---EQVVNAVHEVVPPKQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSM 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A W G + K Sbjct: 166 RGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPV---KTRM 222 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 ++L +LS + VRL Y +P + A G ++PYL +P Q S ++LKSM Sbjct: 223 TELCEALSTLGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKVLKSMK 279 Query: 308 RRHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 R A+E + + I R + PD+ I S FIVGFPGET++DF+ +D + + + F Sbjct: 280 R--PAFEDKTLARIKNWREICPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCF 337 Query: 366 KYSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 +YSP G P +++ LE V ++VK ER + Q+ + ++ +G+ IEVL+++ Sbjct: 338 QYSPVEGAPANDLDLEVVPDDVKQDRWERFMAHQQAISSARLQLR---IGREIEVLVDEV 394 Query: 422 GKEK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ G+ +P + V N N GD + ++TD L+ E + Sbjct: 395 DEQGAVGRCFFDAPEIDGNVFIDNGSNLKPGDKVWCKVTDADEYDLWAEQI 445 >gi|307943540|ref|ZP_07658884.1| MiaB-like tRNA modifying enzyme [Roseibium sp. TrichSKD4] gi|307773170|gb|EFO32387.1| MiaB-like tRNA modifying enzyme [Roseibium sp. TrichSKD4] Length = 459 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 136/445 (30%), Positives = 216/445 (48%), Gaps = 36/445 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M+ + G + D I++NTC + E V +R Sbjct: 5 VVTFGCRLNAYESEVMKREADAAGLK--------DAILINTCAV---TGEAVRQARQAVR 53 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-- 146 K ++ + V+V GC AQ E V++V+G E A FG Sbjct: 54 KAK----RDNPNAKVIVTGCAAQTE-TATFSEMEEVDLVLGNTEKLERKAYEEVAAFGVS 108 Query: 147 ---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K V+ SV + L +DG R R AF+ +Q GCD CTFC++PY RG Sbjct: 109 ETEKVRVNDIMSVTETAGHL--IDGLEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSR 163 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S + VVD+ ++L+ NG EI + G ++ ++ G L G + + L+ + L RL Sbjct: 164 SVPMGVVVDQIKRLVGNGYNEIVITGVDITSY-GADLPGSPKLGTLIAKILTLVPDLKRL 222 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ + + L+ + LMP+ HL +Q+G D ILK M RRH + + + +R Sbjct: 223 RLSSIDSIEADEELMHVIANDHRLMPHFHLSLQAGDDMILKRMKRRHLRADTIRFCEDVR 282 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++RPD+ +D I GFP ET+ F ++ +VD+ G F +SPR GTP + M Q++ Sbjct: 283 AMRPDVVFGADIIAGFPTETEAMFENSLKIVDECGLTHLHVFPFSPRPGTPAARM-PQLE 341 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + ER L+ K E + A VG + +VLIEK G +GR+ V ++ Sbjct: 342 RKIVKERGARLRAKGEEALLKHLQAEVGGVRKVLIEKEG------LGRTEQFTQVEVDGG 395 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 GDI++ RI L G+++ Sbjct: 396 --AAGDIVETRIKGQTGRHLLGDIL 418 >gi|163782456|ref|ZP_02177454.1| hypothetical protein HG1285_06700 [Hydrogenivirga sp. 128-5-R1-1] gi|159882489|gb|EDP75995.1| hypothetical protein HG1285_06700 [Hydrogenivirga sp. 128-5-R1-1] Length = 410 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 121/395 (30%), Positives = 207/395 (52%), Gaps = 18/395 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC+MN +D+ M F GYE V+ + AD+ V+NTC + L R + Sbjct: 7 TLGCRMNQFDTDLMRSRFAESGYEVVDFEEPADVYVINTCTVTSGGDRSSRQALYRAK-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--RFGKR 148 + + LVV GC AQ + EE+ V++VVG + +L+E A ++ Sbjct: 65 -----RRNPNALVVATGCYAQVKPEELASLEE-VDLVVGNTHKDEILKLVEEALENRDRK 118 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 VV + + + + V + R F+ +QEGC+KFCTFCV+P+ RG S Sbjct: 119 VVVGEIFRQKELKNFDTV-LYFEESR---PFIKVQEGCNKFCTFCVIPFARGKVRSAPKE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V+++ R L G E+ L G ++ + G D + +LL + +++G+ +R ++ Sbjct: 175 KVIEQVRLLALQGFEEVVLSGTQLSQY---GWDVGSSLY-ELLLEVLKVEGIKLVRLSSM 230 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 H +++SD L++ + P+ HL +QSGSDR+LK M R + E+R++++ I RP+ Sbjct: 231 HVKEISDELLELVVSERRIAPHFHLSLQSGSDRVLKLMERGYGREEFREVVEFIVKRRPE 290 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 A+ +D I GFPGE+++DFR T+ V++I +A F YS R T S +V E VK Sbjct: 291 SAVGTDVIAGFPGESEEDFRDTLKFVEEIPFAYLHVFPYSDRPFTKASRFGNKVPEGVKK 350 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 ER+ L + ++ F + +G+ + + +G+ Sbjct: 351 ERVKLLGELDEIKRKEFYEGNMGRKLRATVLGNGR 385 >gi|332306183|ref|YP_004434034.1| MiaB-like tRNA modifying enzyme YliG [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173512|gb|AEE22766.1| MiaB-like tRNA modifying enzyme YliG [Glaciecola agarilytica 4H-3-7+YE-5] Length = 473 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 129/420 (30%), Positives = 205/420 (48%), Gaps = 52/420 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY+ VN+ +DADL+++NTC + A ++ +G Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYDVVNTYNDADLVIVNTCGFIDTAVQESLDTIGEA--- 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + E G V+V GC+ E +EI P V + GP Y + VV Sbjct: 96 ----LAENGK--VIVTGCLGIKE-DEIREVHPNVLAITGPHAY-------------EEVV 135 Query: 151 DTDYSVEDKFERLS-------IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + V + + S + D G A+L I EGC+ CTFC++P RG + Sbjct: 136 N---QVHEHLPQPSHNPYLNLVPDIGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLV 192 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + +++DEA++L + GV E+ ++ Q+ +A W G + K ++L Sbjct: 193 SRPIGEILDEAQRLKNAGVKELLVISQDTSAYGVDVKNKMGFWNGMPV---KTGMTELCE 249 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L E+ VRL Y +P + A G + +PYL +P Q S RILK M R A Sbjct: 250 KLGEMGMWVRLHYVYPYPSVDKVMPLMASGKV---LPYLDIPFQHASPRILKLMKRPAAA 306 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I + R + P++ I S FIVGFPGET++DF+ +D +D+ + FKYS G Sbjct: 307 ERTMERIKKWRELCPELVIRSTFIVGFPGETEEDFQMLLDFLDEAQLERVGCFKYSDVEG 366 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 +++ + V E VK ER +K ++ + +G I+VLI++ +E +GRS Sbjct: 367 AKANDLPDPVSEEVKQERFERFMQKQQQISTAKLQRRIGSTIQVLIDEVDEEGA--IGRS 424 >gi|332292790|ref|YP_004431399.1| MiaB-like tRNA modifying enzyme [Krokinobacter diaphorus 4H-3-7-5] gi|332170876|gb|AEE20131.1| MiaB-like tRNA modifying enzyme [Krokinobacter diaphorus 4H-3-7-5] Length = 447 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 132/432 (30%), Positives = 216/432 (50%), Gaps = 44/432 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F +G+++V + AD+ V+NTC + E A ++ S + + + + Sbjct: 11 TLGCKLNFSETSTIARSFGQEGFDKVEFSEPADVYVINTCSVTENADKRFKSIVKQAQKV 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-------ERA 143 EG + V GC AQ + EE L V++V+G + + + +R+ Sbjct: 71 N----PEG---VTVAVGCYAQLKPEE-LADVDGVDLVLGATEKFNVTSYINDLLDNPDRS 122 Query: 144 RFGKRV-----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + G V D D+ V SI D R R AFL +Q+GCD CT+C +P Sbjct: 123 KEGGEVHACEIQDADFYVSS----YSIGD----RTR---AFLKVQDGCDYKCTYCTIPLA 171 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLS 255 RGI S +L V+D A K+ + EI L G N+ + GKG G K TF +L+ L Sbjct: 172 RGISRSDTLQNVLDNASKIAAQDIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVQELD 230 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 +++G+ RLR ++ P + + I +P+ H+P+QSGS++IL M RR+ Y Sbjct: 231 KVEGIERLRISSIEPNLLKNETIDVVSKSRTFVPHFHIPLQSGSNKILGLMRRRYQRELY 290 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + +I+ V P I D IVGFPGETD+DF T + + + + F YS R TP Sbjct: 291 VDRVAKIKEVMPQACIGVDVIVGFPGETDEDFLETYNFLTGLDISYLHVFTYSERDNTPA 350 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG----- 430 + M +V + V+++R L+ + + +F ++ + + VL E KE G + G Sbjct: 351 ATMEGEVPKKVRSKRSKMLRGLSAKMRRAFYESQLNSMRTVLFESENKE-GYIHGFTENY 409 Query: 431 ---RSPWLQSVV 439 +SPW +V Sbjct: 410 VKVKSPWNPELV 421 >gi|15603436|ref|NP_246510.1| hypothetical protein PM1571 [Pasteurella multocida subsp. multocida str. Pm70] gi|18202814|sp|Q9CKN9|RIMO_PASMU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|12721964|gb|AAK03655.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 446 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 136/459 (29%), Positives = 221/459 (48%), Gaps = 46/459 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ S GY + S ++ADL+++NTC + A ++ +G Sbjct: 12 SLGCPKNLVDSERILTELRSDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E + I P V V GP +Y + + + K V Sbjct: 68 ---ALEENGK--VIVTGCLGAKE-DRIREVHPKVLEVTGPHSYEAVMQ-----QVHKYVP 116 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y + + L + G A+L I EGCD CTFC++P RG SRS++QV Sbjct: 117 KPAY---NPYVNL-VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSITQV 172 Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255 +DEA++L++ GV EI ++ Q+ +A W G + K L L Sbjct: 173 LDEAKRLVEAGVKEILVVSQDTSAYALDRSKEEQNKTVFWNGMPI---KNNLISLCEQLG 229 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 ++ VRL Y +P + A G + +PYL +P+Q S +ILK+M R + Sbjct: 230 KLGVWVRLHYVYPYPHVDQLIPLMAEGKI---LPYLDIPLQHASPKILKAMKRPGSIERT 286 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + I + R + PD+ + S FIVGFPGE+++DF+ +D + + + FK+SP G Sbjct: 287 LERIKKWREICPDLTLRSTFIVGFPGESEEDFQLLLDFLKEALLDRVGCFKFSPVEGAIA 346 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433 + M +QV E VK R + +E + VG++ VL+++ +E + + +P Sbjct: 347 TEMPDQVPEEVKEARFHRFMQLQQEISAARLQQKVGKVFTVLVDEVDEEGIIARSIADAP 406 Query: 434 WLQSVV-LNSKNH---NIGDIIKVRITDVKISTLYGELV 468 + VV +++ N G I+V+IT LY L+ Sbjct: 407 EIDGVVYIDNPNRVAVKAGQFIEVKITRADAYDLYASLI 445 >gi|209965481|ref|YP_002298396.1| hypothetical protein RC1_2196 [Rhodospirillum centenum SW] gi|209958947|gb|ACI99583.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 458 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 139/442 (31%), Positives = 221/442 (50%), Gaps = 42/442 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M + + R +DD ++++NTC + +A + + R+R Sbjct: 46 VVTFGCRLNSYESEVM------RAHARTAGLDD--VVIVNTCAVTAEAERQARQAIRRLR 97 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--RFG 146 R + G +VV GC AQ + V+ V+G +L E A FG Sbjct: 98 -----RDRPGAK--IVVTGCAAQVNPDGFAAMGE-VDHVLGNDA-----KLTESAWTEFG 144 Query: 147 ----KRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +RV V+ SV + L + G R R AF+ +Q GCD CTFC++P+ RG Sbjct: 145 VGASERVRVNDIMSVRETASHL--IQGMEGRAR---AFVQVQNGCDHRCTFCIIPFGRGN 199 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S + +VV + R L+++G E+ L G ++ ++ G L G + L+ + L Sbjct: 200 SRSVPMGEVVAQVRTLLESGYREVVLTGVDITSY-GADLPGTPALGQMVRRLLAAVPELP 258 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ +M D L + + + LMP+LHL +Q+G D +LK M RRHT + + ++ Sbjct: 259 RLRLSSLDAVEMDDDLWRLVAEEERLMPHLHLSLQAGDDMVLKRMKRRHTRDDAIRFCEK 318 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R +RPDI +D I GFP ETD F ++ +V++ G F YS R GTP + M Q Sbjct: 319 ARGLRPDIVFGADIIAGFPTETDAMFENSLRIVEECGLTWLHVFPYSARPGTPAAKM-PQ 377 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V V+ ER L+ + + A VG+ VL+E+ G +GR+P V L+ Sbjct: 378 VPVPVRKERAARLRAAGQVAVDRYLAAQVGRTAGVLVERAG------LGRTPGFAEVRLD 431 Query: 442 SKNHNIGDIIKVRITDVKISTL 463 H G +I+ R+T V + L Sbjct: 432 G-THAPGSLIRCRLTGVDGTML 452 >gi|104783090|ref|YP_609588.1| ribosomal protein S12 methylthiotransferase [Pseudomonas entomophila L48] gi|123079105|sp|Q1I6D1|RIMO_PSEE4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|95112077|emb|CAK16804.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 443 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 148/471 (31%), Positives = 232/471 (49%), Gaps = 61/471 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 8 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ EG I P V V GPQ Y Sbjct: 67 IGEA-------IKENGK--VIVTGCMGVEEGS-IRDVHPSVLSVTGPQQY---------- 106 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 107 ---EQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 163 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR + +V+ EA +L+ GV EI ++ Q+ +A W G+ + K Sbjct: 164 RGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPV---KTRM 220 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 +L +LS + VRL Y +P + A G ++PYL +P Q S ++LKSM Sbjct: 221 LELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKSMK 277 Query: 308 RRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 R A+E R + RI++ R P++ I S FIVGFPGET++DF+ +D + + + Sbjct: 278 R--PAFEDRTLA-RIKNWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGC 334 Query: 365 FKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 F+YSP G P +++ L++V ++VK ER + + +G+ IEVLI++ + Sbjct: 335 FQYSPVEGAPANDLGLDEVPDDVKQERWDRFMAHQQAISAARLQQRIGKEIEVLIDEV-E 393 Query: 424 EKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 E+G VGRS P + V +H GD ++ RI D ++ E + Sbjct: 394 EQGS-VGRSFFDAPEIDGSVFIDGDHGFKPGDKVRCRIVDADEYDMWAEPI 443 >gi|163859042|ref|YP_001633340.1| ribosomal protein S12 methylthiotransferase [Bordetella petrii DSM 12804] gi|238065294|sp|A9IFP1|RIMO_BORPD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|163262770|emb|CAP45073.1| conserved hypothetical protein [Bordetella petrii] Length = 441 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 144/468 (30%), Positives = 224/468 (47%), Gaps = 55/468 (11%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P + S GC + DS R+ ++GY+ S DDAD++V+NTC + A + Sbjct: 6 PASIAMISLGCPKALVDSERILTQLRTEGYQVTPSYDDADVVVVNTCGFIDSAKAESLEA 65 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLER 142 +G I E G V+V GC+ E ++R P V V GPQ Y ++ +LE Sbjct: 66 IGEA-------IAENGK--VIVTGCMGVEES--VIREIHPSVLAVTGPQQYEQV--VLEV 112 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R D + V+ + G A+L I EGC+ C+FC++P RG Sbjct: 113 HRAAPPKADHNPYVD------LVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDL 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR + V+ EA +L+ GV E+ ++ Q+ +A W G+ + K ++L Sbjct: 167 VSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYRSGFWNGRPI---KTRMTELC 223 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +LSE+ RL Y +P + A G + +PYL +P Q S RILK+M R Sbjct: 224 AALSELGVWTRLHYVYPYPHVDEVIPLMAQGKV---LPYLDIPFQHASPRILKAMKR--P 278 Query: 312 AYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 A+E + + I R R PD+ + S FIVGFPGET+ DF+ +D + + + F+YSP Sbjct: 279 AFEDKTLARIKRWREECPDLTLRSTFIVGFPGETEADFQYLLDWMSEAQLDRVGCFQYSP 338 Query: 370 RLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 G P + + V + VK E R + Q+ + ++ VG+ I+VLI++ + Sbjct: 339 VNGAPANELDGAVPDEVKQERWDRFMAHQQAISAARLQTR---VGREIDVLIDEVNADGA 395 Query: 427 KLVGRS----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 VGRS P + V N+ GD+ +VRIT L+G+ V Sbjct: 396 --VGRSSADAPEIDGCVYVGNAATLRPGDMARVRITAADEYDLHGDAV 441 >gi|23013648|ref|ZP_00053519.1| COG0621: 2-methylthioadenine synthetase [Magnetospirillum magnetotacticum MS-1] Length = 448 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 136/459 (29%), Positives = 223/459 (48%), Gaps = 49/459 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + S GC + DS R+ ++GY+ S D AD++++NTC + A + +G Sbjct: 10 IVSLGCSKALVDSERILTKLRAEGYDISGSYDGADVVIVNTCGFLDSARAESLEAIGEA- 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 + E G V+V GC+ E + I P V V GP Y + E + A Sbjct: 69 ------LAENGK--VIVTGCMGGDE-KAIRGAHPSVLAVSGPHQYQAVVEAVHAAI---- 115 Query: 149 VVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + D +LS+V G + A+L I EGC+ C+FC++P RG +SRS Sbjct: 116 -----PPLHDP--KLSLVPPEGLHLTPHHYAYLKISEGCNNSCSFCIIPDIRGPLVSRSA 168 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSE 256 + V+ EA +L ++GV E+ ++ Q+ +A WRG+ + + +DL +L E Sbjct: 169 ADVLGEAERLAESGVRELLVISQDTSAYGLDLRHAESSWRGRPV---RAHLTDLARALGE 225 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + +R+ Y +P + A G + +PYL +P Q S +LK+M R Sbjct: 226 LGIWIRMHYVYPYPHVDEIIPLMAEGKI---LPYLDIPFQHASPNVLKAMRR---PANQE 279 Query: 317 QIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 +++ RIRS R PD+ + S FIVGFPGETDDDF + ++ +D+ + FKY G Sbjct: 280 KVLGRIRSWRETCPDLTLRSTFIVGFPGETDDDFESLLEWMDEAQLDRVGCFKYEDVKGA 339 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431 P + +QVDE+VK ER + R+ A G +EV+I++ +E G+ Sbjct: 340 PSNAFADQVDEDVKEERHQRFMEAARQIADERGAAKEGTRVEVIIDEVDEEGAIGRSKAD 399 Query: 432 SPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 SP + V + ++ GD++ V + + L+G++V Sbjct: 400 SPEVDGAVFMNGETDLEPGDLVIVEVEAAEDYDLWGDVV 438 >gi|254283413|ref|ZP_04958381.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [gamma proteobacterium NOR51-B] gi|219679616|gb|EED35965.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [gamma proteobacterium NOR51-B] Length = 448 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 137/424 (32%), Positives = 203/424 (47%), Gaps = 43/424 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 PQR S GC + DS R+ GYE S +DA ++++NTC + A + Sbjct: 13 PQRVGFVSLGCPKALVDSERILTQLRLDGYEVTPSYEDAGVVIVNTCGFIDSAKAESLEA 72 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G I+E G +LV GC+ + A+ E IL P V + GP Y E+L Sbjct: 73 IGEA-------IEENGRVLVT--GCMGKGADAEAILEAHPKVLGITGPAAYE---EVLSE 120 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R RV+ + + + I G A+L I EGC+ C FCV+P RG Sbjct: 121 VR---RVLPNKHKPDPTIDL--IPAQGVKLTPRHYAYLKISEGCNHRCRFCVIPSMRGDL 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR + +V+ EA L+ GV EI ++ Q+ +A W G+ L K L Sbjct: 176 VSRPIGEVMREAEGLVRAGVREILVISQDTSAYGVDLRYRTDFWDGRPL---KTNLETLA 232 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L E+ +RL Y +P D +I D +L PYL +P+Q GS +L+ M R Sbjct: 233 ATLGELGVWIRLHYVYPYPH--VDKVIPLMADGKIL-PYLDIPLQHGSPAVLERMKRPAA 289 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 A + I R R V PDI + S FIVG+PGETD +F+ +D ++ + FKYSP Sbjct: 290 AEKTLDRIHRWREVCPDITLRSTFIVGYPGETDAEFQELLDFMESAQLDRVGCFKYSPVA 349 Query: 372 GTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 G +++ V E VK ER + LQ+++ ++ VG I+VLI++ E Sbjct: 350 GAAANDLPNPVPEAVKEERWQIFMALQQRISADKLQRK---VGSTIDVLIDQVDSEGA-- 404 Query: 429 VGRS 432 +GRS Sbjct: 405 IGRS 408 >gi|307246560|ref|ZP_07528632.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255545|ref|ZP_07537351.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259996|ref|ZP_07541709.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852623|gb|EFM84856.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861587|gb|EFM93575.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866024|gb|EFM97899.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 443 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 131/459 (28%), Positives = 225/459 (49%), Gaps = 52/459 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ + GY + S ++ADL+++NTC + A ++ +G Sbjct: 11 SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E + I P V + GP +Y + + ++ R Sbjct: 67 ---ALEENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV--MKHVHKYVPRPE 118 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y+ + + + Y A+L I EGCD CTFC++P RG SR + QV Sbjct: 119 RNIYTSLVPAQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMRGDLDSRPIVQV 171 Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255 +DEA++L D+GV E+ ++ Q+ +A W G + T + L +L Sbjct: 172 LDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGVPIKNNLITLCEQLGTLG 231 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 VRL Y +P + A G + +PYL +P+Q S ++LK+M R Sbjct: 232 ---IWVRLHYVYPYPHVDDLIPLMAQGKI---LPYLDIPLQHASPKVLKAMKRPGAIDRT 285 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + I + R + P++ + S FIVGFPGET++DF+ +D +++ + FK+SP G Sbjct: 286 LERIKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFSPVEGAVA 345 Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430 + M +QV E+VK E R + +Q+++ ++ VG+ + V+I++ +E G+ + Sbjct: 346 TEMADQVPEDVKGERFHRFMQVQQRISAARLQQK---VGKTLAVIIDEIDEEGIIGRSMA 402 Query: 431 RSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 +P + VV L+ + +G +I V IT+ L+G Sbjct: 403 DAPEIDGVVYVDNLSEQEVKVGQVISVSITNADEYDLWG 441 >gi|192291328|ref|YP_001991933.1| ribosomal protein S12 methylthiotransferase [Rhodopseudomonas palustris TIE-1] gi|238066579|sp|B3QIV5|RIMO_RHOPT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|192285077|gb|ACF01458.1| MiaB-like tRNA modifying enzyme YliG [Rhodopseudomonas palustris TIE-1] Length = 441 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 141/466 (30%), Positives = 222/466 (47%), Gaps = 48/466 (10%) Query: 18 VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 + Q P+ FV S GC + DS R+ ++GYE D ADL+++NTC + A Sbjct: 1 MQQATAPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADLVIVNTCGFLDSAK 59 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 ++ + +G V+V GC+ AE E+I P V + GPQ Y + Sbjct: 60 QESLAAIGEAMATNGK---------VIVTGCMG-AEPEQIEAAYPGVLSITGPQQYESVL 109 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 + + RAR D V + RL+ A+L I EGC+ C+FC++P Sbjct: 110 DAVHRARPALHNPHLDL-VPPQGVRLTPRH---------YAYLKISEGCNNRCSFCIIPK 159 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246 RG +SR V+ EA KL+ GV E+ ++ Q+ +A W+ + + + Sbjct: 160 LRGDLVSRPAGDVLREAEKLVAAGVKELLVISQDTSAYGVDVKYAESPWKDRAV---RAK 216 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F DL L E+ VRL Y +P D +I D VL PYL +P Q S +LK M Sbjct: 217 FLDLASELGELGAWVRLHYVYPYPH--VDEVIGLMADGKVL-PYLDIPFQHASPDVLKLM 273 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + I R R PD+A+ S FIVGFPGET+ DF ++ +D+ + +FK Sbjct: 274 KRPAAQDKTLDRIKRWREQCPDLALRSTFIVGFPGETERDFEFLLEWLDEAEIDRLGAFK 333 Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 Y P G P + + +Q+ + VK E RL+ Q+ + +++ VG +V+I++ G Sbjct: 334 YEPVAGAPSNALPDQIADEVKQERWNRLMARQQAISARRLKRK---VGTRQQVIIDEIGP 390 Query: 424 --EKGKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465 KG+ +P + +V L+S+ +G+I+ +I L+G Sbjct: 391 TVTKGRSKADAPEIDGAVYLSSRRPLRVGEIVTAKIDRADAYDLHG 436 >gi|332290240|ref|YP_004421092.1| hypothetical protein UMN179_02182 [Gallibacterium anatis UMN179] gi|330433136|gb|AEC18195.1| conserved hypothetical protein [Gallibacterium anatis UMN179] Length = 445 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 132/468 (28%), Positives = 229/468 (48%), Gaps = 65/468 (13%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY V S D+ADL+++NTC + A ++ +G Sbjct: 12 SLGCPKNLVDSERILTELRAEGYNIVPSYDNADLVIVNTCGFIDSAVQESLEAIGE---- 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E + I P V + GP +Y + + ++ + Sbjct: 68 ---ALEENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV--MTHVHKYAPKPE 119 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQEGCDKFCTFCVVPYTRGIEIS 204 Y L++V K+GV A++ I EGCD CTFC++P RG S Sbjct: 120 YNPY--------LNVVP-----KQGVKLTPKHYAYVKISEGCDHRCTFCIIPSMRGDLDS 166 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA----------------WRGKGLDGEKCTFS 248 R ++ ++DEA++L+D GV E+ ++ Q+ +A W G + + T Sbjct: 167 RPINTILDEAKRLVDAGVKELLIVSQDTSAYALDKNQKEQKSKTVFWNGMPIKNDLITLC 226 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 + L +L VRL Y +P + A G + +PYL +P+Q S +ILK+M R Sbjct: 227 EQLGTLG---VWVRLHYVYPYPHVDKLIPLMAQGKI---LPYLDIPLQHASPKILKAMKR 280 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + + I + R + P++ + S FIVGFPGET++DF+ +D + + + FK+S Sbjct: 281 PGSIDRTLERIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFIQEAQLDRVGCFKFS 340 Query: 369 PRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 P G + M EQV E VK E R + LQ+++ Q++ +G+ + V+I++ +E Sbjct: 341 PVEGAVATEMAEQVPEEVKEERFHRFMQLQQQISAQRLQQK---IGKTLPVMIDEIDEEG 397 Query: 426 --GKLVGRSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGEL 467 G+ + +P + VV ++ + IG+++ I + L+ + Sbjct: 398 IIGRSMADAPEIDGVVYIDNISEQQVKIGEVVMATIHNADEYDLWATI 445 >gi|311747718|ref|ZP_07721503.1| 2-methylthioadenine synthetase [Algoriphagus sp. PR1] gi|126575706|gb|EAZ80016.1| 2-methylthioadenine synthetase [Algoriphagus sp. PR1] Length = 439 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 115/402 (28%), Positives = 207/402 (51%), Gaps = 18/402 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F +GY +V+ ++ D+ ++NTC + E A +K + + + Sbjct: 8 TLGCKLNFSETSTISRQFEDKGYLKVDFQENPDIFIINTCSVTENADKKCKKIVKEAKKI 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + V + GC AQ + +EI P V+ V+G +RL ELL+ F K Sbjct: 68 -------SPNSYVTIIGCYAQLKPKEI-SEIPDVDAVLGAAEKFRLIELLDD--FAK--A 115 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + + + + + Y+ FL +Q+GC+ C FC +P RG S ++ V Sbjct: 116 QETKVLASEIQEATTFNNAYSINDRTRTFLKVQDGCNYGCAFCTIPLARGKSRSNTIESV 175 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCT-FSDLLYSLSEIKGLVRLRYTTS 268 ++ AR++ V EI L G N+ + G+ DG++ F+DL+++L +++G+ R R ++ Sbjct: 176 LESAREIAATDVKEIVLTGVNIGDF---GIVDGKRNERFADLVFALDDVEGINRFRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P +++ +I +P+ H+P+QSGS+ IL+ M RR+ Y + +I+S+ P Sbjct: 233 EPNLLTNEIISFAAQSKRFVPHFHVPLQSGSNTILRKMGRRYLRELYVDRVSKIKSLMPH 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I D IVGFPGETD+ F T + ++++ + F YS R T + M V + V+ Sbjct: 293 ACIGVDVIVGFPGETDELFLETYNFLNELDISYLHVFTYSERANTRATEMEGVVPKKVRN 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 ER L+ +++ F + +G+ VL E+ E GK+ G Sbjct: 353 ERSKMLRILSEKKRRKFYEENLGKTFTVLFEE-DIENGKMHG 393 >gi|116749020|ref|YP_845707.1| MiaB-like tRNA modifying enzyme YliG [Syntrophobacter fumaroxidans MPOB] gi|238066613|sp|A0LIM0|RIMO_SYNFM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|116698084|gb|ABK17272.1| MiaB-like tRNA modifying enzyme YliG [Syntrophobacter fumaroxidans MPOB] Length = 444 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 141/456 (30%), Positives = 222/456 (48%), Gaps = 42/456 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M GYE + A LI++NTC E A + + ++ Sbjct: 10 SLGCAKNLVDSESMVSQLIELGYEMTPEVSQAALILVNTCGFLESAVRESIDTVLQLAGY 69 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K S G +VVAGC+ Q G+++L P V++ +G + L + G Sbjct: 70 KAS----GSCEKLVVAGCMVQRYGKKLLGLLPEVDLFLGTSHCHALKSFIRDHEAGSS-- 123 Query: 151 DTDYSVEDKFERLSI-----VDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 ERL I VD G +R + +A++ I EGC C FC++P RG Sbjct: 124 ----------ERLRIAFPDHVDNGADRHLVEGRSSAYVKIAEGCGNRCAFCLIPRLRGPY 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 SR ++ EA +L+ G E+ ++ Q+ A+ G D GE+ LL SL EI+ L Sbjct: 174 RSRRAVDILREAHRLVACGAKELNIVAQDTTAF---GSDRGEEHALVSLLESLEEIEKLE 230 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R ++P ++ LI+ ++PYL +P+Q RIL SM R T E +I+D Sbjct: 231 WVRLLYAYPDRITPELIRTMSQSRKVVPYLDIPLQHCVPRILASMGRSGTDPE--RIVDA 288 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IRS P +A+ + IVGFPGET+ DF+A V+ G+ F +SP GT + M ++ Sbjct: 289 IRSGIPGVALRTSLIVGFPGETEADFQALTAFVECTGFEHLGVFAFSPEPGTRAARMPDR 348 Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSP 433 V +V ER LL LQ+ + +++ ++ VG+++ VL+E E G+L ++P Sbjct: 349 VPPDVAQERRKVLLELQRGISRRRL---ESLVGRVLPVLVEGFHPETDLLLTGRLAVQAP 405 Query: 434 WLQSVVLNSKN-HNIGDIIKVRITDVKISTLYGELV 468 VL + G+I++ R+T + EL+ Sbjct: 406 EADGTVLITDGIGTPGEIMRCRVTAAHDYDVEAELL 441 >gi|34763184|ref|ZP_00144150.1| Fe-S OXIDOREDUCTASE (1.8.-.-) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887153|gb|EAA24258.1| Fe-S OXIDOREDUCTASE (1.8.-.-) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 435 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 131/449 (29%), Positives = 225/449 (50%), Gaps = 40/449 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ +++ +GYE V D +D+ ++N+C + A K + L R + + Sbjct: 11 TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138 D V+V GC AQ EIL +S IVN V + Sbjct: 71 -------NPDAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ER + G + +Y E +F L + A++ IQ+GC+ FC++C +P+ Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG SR ++ E KL+++G E+ L+G +++A+ GK EK F LL + +IK Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GKDF-KEKDNFESLLEDILKIK 226 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L R+R + +P ++D I+ + + LMP+LH+ +QS D +LK+M R + + R+ Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKN-ENLMPHLHISLQSCDDTVLKNMRRNYGSSLIRES 285 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + +++S ++ ++D IVGFP E + F+ T D++ +I ++ F+YS R GT SNM Sbjct: 286 LLKLKSKVKNMEFTADVIVGFPKEDETMFQNTYDVIKEIEFSGLHIFQYSDREGTIASNM 345 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 +VD K +R L +E ++ + + +EVL+E+ + G+ G S V Sbjct: 346 DGKVDAKTKKQRADRLDNLKQEMILNSRKKYLEKNLEVLVEEE--KDGEYFGYSQNYLRV 403 Query: 439 VLNSKNHN-IGDIIKVRITDVKISTLYGE 466 S N + +I V+I VK L E Sbjct: 404 KFRSDEKNLVNKLINVKIKCVKNDILIAE 432 >gi|188577734|ref|YP_001914663.1| hypothetical protein PXO_01247 [Xanthomonas oryzae pv. oryzae PXO99A] gi|238055316|sp|B2SWC0|RIMO_XANOP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|188522186|gb|ACD60131.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 460 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 142/461 (30%), Positives = 216/461 (46%), Gaps = 44/461 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP+ FV S GC + DS R+ +GY+ V S D AD++V+NTC + A + Sbjct: 8 VPKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLD 66 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N V+V GC+ + E+I P V V GPQ Y + E + Sbjct: 67 AIGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHA 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A + D F L + D G A+L I EGC+ C+FC++P RG Sbjct: 117 ALPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDL 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS--------- 253 +SR + +V+ EA +L+ GV E+ ++ Q+ +A+ G L + + D +Y Sbjct: 167 VSRPVDEVLCEAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEG 225 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LSE+ RL Y +P + A G L +PYL +P Q S RILK M R Sbjct: 226 LSELGVWTRLHYVYPYPHVDDVLPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVE 282 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + Q + R +++ P+I + S FIVGFPGETD +F + +D +D+ + +F YSP G Sbjct: 283 KTLQRVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGA 342 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS- 432 + + + V E VK ERL K E +A +G + + L++ E V RS Sbjct: 343 SANALPDPVPEEVKQERLARFMAKQAEISALRLEAKIGSVQQCLVDL--IEDDIAVARSR 400 Query: 433 ---PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466 P + +V +GD++ V ITD L+G+ Sbjct: 401 ADAPEIDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 441 >gi|27367631|ref|NP_763158.1| ribosomal protein S12 methylthiotransferase [Vibrio vulnificus CMCP6] gi|81446986|sp|Q8D4N8|RIMO_VIBVU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|27359203|gb|AAO08148.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Vibrio vulnificus CMCP6] Length = 469 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 135/453 (29%), Positives = 220/453 (48%), Gaps = 40/453 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GYE VNS D+D++++NTC + A ++ +G Sbjct: 40 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 96 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI P V + GP Y + E + + F + Sbjct: 97 ----LKENGK--VIVTGCLGARE-DEIREVHPGVLGITGPHAYENVLEHVHQ--FAPK-- 145 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F L + D G A+L I EGC+ CTFC++P RG +SR + ++ Sbjct: 146 ----PEHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 200 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGL--------- 260 + EA +L + GV E+ ++ Q+ +A+ G+D + F++ IK L Sbjct: 201 LSEAERLKNAGVKELLVISQDTSAY---GVDSKHSLGFANGSPVRQNIKALSEELGKMGI 257 Query: 261 -VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S +LK+M R A I Sbjct: 258 WVRLHYVYPYPHVDDLIPLMAEGKI---LPYLDIPFQHASPNVLKAMKRPGRAERTLDQI 314 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGETD+DF ++ + + + FKYSP G +++ Sbjct: 315 KKWREICPELVIRSTFIVGFPGETDEDFEMLLEWLKEAQLDRVGCFKYSPVEGAAANDID 374 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQS 437 +Q+ E VK ER C +E + +G ++V+I++ +E G+ +P + Sbjct: 375 DQISEEVKQERFECFMLVQQEISAAKLQKRIGSTMKVIIDEVDEEGAIGRTYADAPEIDG 434 Query: 438 VV-LNSKNH-NIGDIIKVRITDVKISTLYGELV 468 +V LN + G+++ V I L+G LV Sbjct: 435 LVYLNGETSLKAGELVDVLIEHADEYDLWGSLV 467 >gi|55981144|ref|YP_144441.1| ribosomal protein S12 methylthiotransferase [Thermus thermophilus HB8] gi|81364108|sp|Q5SJ39|RIMO_THET8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|55772557|dbj|BAD70998.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 434 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 141/453 (31%), Positives = 224/453 (49%), Gaps = 47/453 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ + GYE S ++A+L+++NTC +A E+ +G Sbjct: 8 SLGCPKALVDSEQILSRLKALGYETSPSYEEAELVIVNTCGFINEAVEESLEVIGEA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G VVV GC+ A E+I R P V + GP R+ E ++ R Sbjct: 65 ----LKENGK--VVVTGCLG-ARPEKIRERHPQVLAITGPGEVERVLEAVQVVLPAPR-- 115 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L ++ A++ + EGCD C+FC++P RG SR + V Sbjct: 116 -------DPF--LDLIPPQVKLTPRHYAYVKLSEGCDHRCSFCIIPKLRGRLRSRDAADV 166 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLLYSLSEIKGLVR 262 + EA +L+ G E+ L+ Q+++A+ + L G++ DLL ++E+ +R Sbjct: 167 LAEAARLVATGTKELLLVAQDLSAYGVDLGHRESLWGDRPVRAELKDLLAHMAELGAWIR 226 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDR 321 L Y +P + A G + +PYL +P+Q S RIL+ M RR YE + + + Sbjct: 227 LHYVYPYPHVKDLLPLMAEGKV---LPYLDVPLQHASPRILRLM-RRPGGYESHLKALKA 282 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R V P++A+ S FIVGFPGET++DF+ +D +++ + F YSP G + + + Sbjct: 283 WREVVPELALRSTFIVGFPGETEEDFQILLDFLEEAELDRVGVFAYSPVEGAEANRLPDP 342 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434 V E VK E RLL LQ ++ ++ N VG+ +EVL+++ E G VGR SP Sbjct: 343 VPEEVKEERKARLLELQARVSLRK---NQRFVGKTLEVLVDEL-PEPGLAVGRTYRDSPG 398 Query: 435 LQSVVLNSKNHN--IGDIIKVRITDVKISTLYG 465 + VV + +G+ I VRI L+G Sbjct: 399 IDGVVYVETDGTVRVGERIPVRILRADTYDLHG 431 >gi|169831003|ref|YP_001716985.1| MiaB-like tRNA modifying protein YliG [Candidatus Desulforudis audaxviator MP104C] gi|238065333|sp|B1I310|RIMO_DESAP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|169637847|gb|ACA59353.1| MiaB-like tRNA modifying enzyme YliG [Candidatus Desulforudis audaxviator MP104C] Length = 450 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 141/437 (32%), Positives = 219/437 (50%), Gaps = 17/437 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSF 83 R + S GC N D M + GY+ + + +AD+I++NTC I++ E + + Sbjct: 10 SRIALVSLGCDKNRVDGEVMLGLLERAGYQ-ITAELEADIILVNTCAFIQDAKQESIEAI 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L R N R + +++ GC+AQ +E+LR P ++ VVG R+ +++ RA Sbjct: 69 LETARYRGNGRCR-----VLLATGCLAQRYPDELLRDIPELDGVVGTGEVGRVVDIVRRA 123 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+RV + E L V G TA+L I EGCD C +CV+P RG Sbjct: 124 ATGERVREVGPPGFLGREVLPRVPSGSP----FTAYLKISEGCDNRCLYCVIPQLRGPYR 179 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR S +V EAR L G EI L+ Q+ + G L E+ + +DL+ L+ ++G+ + Sbjct: 180 SREASVLVREARALAARGAREIVLVAQDTTRY-GSDLK-ERTSLTDLVSRLAALEGVAWI 237 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R +P ++ L++ L YL +P+Q SDR+L+ M R +Y+ R++I +R Sbjct: 238 RLLYCYPSGITFELVELMAREPRLCRYLDIPLQHASDRVLRRMGRSTMSYDLRKLILFLR 297 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S P + I S F+VGFPGET+ DF + + + +A F YS GTP + M +QV Sbjct: 298 SAIPGLTIRSTFMVGFPGETEADFEELLGFLKAMKLDRAGFFAYSREEGTPAARMPDQVP 357 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVLN 441 VK ERL RE + N A VG + VL+E E+ G+ +P + V Sbjct: 358 PEVKRERLERAAAVQREVSRALNRARVGSEVTVLVEGRKGEQYYGRSEADAPDIDGRVFL 417 Query: 442 SKNHNI--GDIIKVRIT 456 S ++ G ++ RIT Sbjct: 418 SAASDLEPGTFVRARIT 434 >gi|165977072|ref|YP_001652665.1| hypothetical protein APJL_1669 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250798|ref|ZP_07336992.1| hypothetical protein APP6_1924 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|238065278|sp|B0BRW2|RIMO_ACTPJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|165877173|gb|ABY70221.1| hypothetical protein APJL_1669 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650311|gb|EFL80473.1| hypothetical protein APP6_1924 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 443 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 131/459 (28%), Positives = 225/459 (49%), Gaps = 52/459 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ + GY + S ++ADL+++NTC + A ++ +G Sbjct: 11 SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E + I P V + GP +Y + + ++ R Sbjct: 67 ---ALEENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV--MKHVHKYVPRPE 118 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y+ + + + Y A+L I EGCD CTFC++P RG SR + QV Sbjct: 119 RNIYTSLVPAQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMRGDLDSRPIVQV 171 Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255 +DEA++L D+GV E+ ++ Q+ +A W G + T + L +L Sbjct: 172 LDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGVPIKNNLITLCEQLGTLG 231 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 VRL Y +P + A G + +PYL +P+Q S ++LK+M R Sbjct: 232 ---IWVRLHYVYPYPHVDDLIPLMAQGKI---LPYLDIPLQHASPKVLKAMKRPGAIDRT 285 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + I + R + P++ + S FIVGFPGET++DF+ +D +++ + FK+SP G Sbjct: 286 LERIKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFSPVEGAVA 345 Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430 + M +QV E+VK E R + +Q+++ ++ VG+ + V+I++ +E G+ + Sbjct: 346 TEMADQVSEDVKEERFHRFMQVQQRISAARLQQK---VGKTLAVIIDEIDEEGIIGRSMA 402 Query: 431 RSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 +P + VV L+ + +G +I V IT+ L+G Sbjct: 403 DAPEIDGVVYVDNLSEQEVKVGQVISVSITNADEYDLWG 441 >gi|306819660|ref|ZP_07453323.1| MiaB family RNA modification enzyme [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552305|gb|EFM40233.1| MiaB family RNA modification enzyme [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 438 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 133/451 (29%), Positives = 236/451 (52%), Gaps = 42/451 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++ ++S GC N+ D+ M + GYE + +DDAD+ ++NTC E A E+ + Sbjct: 3 KKYVLESLGCSKNLVDAEEMVYILNENGYEMTDDIDDADVAIVNTCGFIESAKEESIDTI 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I + K +K ++V GC+ Q +++ + P ++ +G +Y + +L+ Sbjct: 63 LNIASHKQKNLKH-----LIVTGCLVQRYYKDLKEQIPEIDAFLGTTSYNTILNVLQGLS 117 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRG 200 GK ++ + +N+K+ +T A++ I EGCD CT+C++P RG Sbjct: 118 IGK---------DNSLILPANTKLDHNKKKILTDSYYAYIKIAEGCDNSCTYCIIPKLRG 168 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIK 258 +SR + ++V+EA++L V EI L+ Q+ + + GLD GEK +LL LS+I+ Sbjct: 169 RYVSRPMEEIVEEAKRLASQNVKEIVLIAQDTSKY---GLDIYGEK-KLPNLLRELSKIE 224 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ +R+ ++P D++D L++ + D + Y +P+Q S+RILK MNR E Sbjct: 225 GIRWIRFLYTYPEDITDELVQEVKNNDKVCSYFDIPIQHASNRILKLMNRSTDRQEISDK 284 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I+ IRS D I + I GFP E+ +D D V ++ + + F YS GT NM Sbjct: 285 INLIRSNIKDAIIRTTLITGFPTESQEDIDELADFVRQMKFDKLGVFPYSREEGTKAGNM 344 Query: 379 LEQVDENVK---AERLLCLQKKL-REQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 Q++++VK AE ++ LQ+++ RE+ S+ I++ + E + +V RS + Sbjct: 345 DGQIEQDVKNQRAEMIMRLQQEIVREKNESYVGRPFSTIVDEVYEDY------VVARS-Y 397 Query: 435 LQSVVLNS-------KNHNIGDIIKVRITDV 458 + + +++ H GD I+V+ITDV Sbjct: 398 MDVIEVDTVIYVNTETTHEKGDFIEVKITDV 428 >gi|256157741|ref|ZP_05455659.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti M490/95/1] gi|256253289|ref|ZP_05458825.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti B1/94] gi|261220402|ref|ZP_05934683.1| conserved hypothetical protein [Brucella ceti B1/94] gi|265996247|ref|ZP_06108804.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|260918986|gb|EEX85639.1| conserved hypothetical protein [Brucella ceti B1/94] gi|262550544|gb|EEZ06705.1| conserved hypothetical protein [Brucella ceti M490/95/1] Length = 437 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 152/464 (32%), Positives = 227/464 (48%), Gaps = 47/464 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ S+GYE D ADL+++NTC + A ++ Sbjct: 3 APRVSFV-SLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLE 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N E G V+V GC+ AE + I R P V + GPQ Y E + Sbjct: 62 AIGLALN-------ENGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAY----ESVMN 107 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A V + D F L G R A+L I EGC C+FC++P RG Sbjct: 108 A-----VHEVAPPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDL 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251 +SR +++V+ EA KL+ GV EI ++ Q+ +A+ GLD + + F DL Sbjct: 162 VSRPINEVLREAEKLVQAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDLS 218 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L E+ VR+ Y +P + A G + +PYL +P Q S +LK+M R Sbjct: 219 RELGEMGVWVRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPAVLKNMRRPAH 275 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + + I R PD+A+ S FIVG+PGET++DF+ +D +D+ +A FKY Sbjct: 276 QEKTSRRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKYEAVK 335 Query: 372 GTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLI-EKHGK-EKG 426 G +++ LEQV E VK R K +QQ+S N VG+ + V+I E +G +KG Sbjct: 336 GAKANDLGLEQVPEEVKEARWHRFMAK--QQQISTNLLKKKVGKRLPVIIDEANGTIDKG 393 Query: 427 KLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + +P + SV ++S+ +GDI+ V+I L+G V Sbjct: 394 RTRYDAPEIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 437 >gi|284036269|ref|YP_003386199.1| MiaB-like tRNA modifying enzyme [Spirosoma linguale DSM 74] gi|283815562|gb|ADB37400.1| MiaB-like tRNA modifying enzyme [Spirosoma linguale DSM 74] Length = 449 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 127/450 (28%), Positives = 220/450 (48%), Gaps = 21/450 (4%) Query: 19 DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78 D + ++ + GC++N ++ + + QG+ERV D+ ++NTC + + A + Sbjct: 3 DTLLAVKKVAFYTLGCKLNFSETSTLARLMEQQGFERVEFNQQPDVFIINTCSVTDNADK 62 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 K R + K + V + GC AQ + +EI P V+ V+G +RL E Sbjct: 63 KC-------RKIVREAQKINPEGYVAILGCYAQLKPKEI-SEIPGVDAVLGAAEKFRLHE 114 Query: 139 LLE---RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 L+ + G+ + +E+ + Y+ FL +Q+GCD C +C + Sbjct: 115 LMPTFVKVPTGEPAQVFNSPIEEALD----YHAAYSLNDRTRTFLKVQDGCDYPCAYCTI 170 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKC-TFSDLLYS 253 P RG S +++ VV AR++ + GV EI L G N+ + GL +G++ TF DL+ + Sbjct: 171 PLARGKSRSDTIANVVKAAREIAERGVKEIVLTGVNIGDF---GLINGQRTETFFDLVQA 227 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 L E+ G+ R R ++ P ++D +I +P+ H+P+QSGS+R+L M RR+ Sbjct: 228 LDEVDGIERFRISSIEPNLLTDEIIAFVAQSKRFVPHFHIPLQSGSNRVLGLMRRRYKRE 287 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 Y +++I+ + P I D IVG PGETD +F+ T ++++ + F YS R T Sbjct: 288 LYVDRVEKIKELMPHACIGVDVIVGHPGETDVEFKETYMFLNELPISYLHVFTYSERPNT 347 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 + V +++AER L +++ +F DA VG+ VL E+ + GK+ G + Sbjct: 348 TALTIKPTVSGHIRAERSKMLHILSDKKRRAFYDAQVGRTATVLFEEDIAD-GKMQGFTE 406 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTL 463 VV I + + V ++ V L Sbjct: 407 NYVRVVAKYDPLLINETLAVHLSGVNAEGL 436 >gi|309792044|ref|ZP_07686520.1| MiaB-like tRNA modifying enzyme YliG [Oscillochloris trichoides DG6] gi|308225937|gb|EFO79689.1| MiaB-like tRNA modifying enzyme YliG [Oscillochloris trichoides DG6] Length = 439 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 130/452 (28%), Positives = 223/452 (49%), Gaps = 28/452 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++ + + GC N DS ME + G+ R DAD+I++NTC A E+ L Sbjct: 2 KYHILTLGCPKNSVDSEGMEGLLTDAGHTRAADATDADVIIVNTCSFIAAAREETVQVL- 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144 R+L R K G L+ AGC+AQ+ G+ +L + V+ + Q + R+ E++ A Sbjct: 61 --RDL--GRHKRAGQRLIA-AGCMAQSHGD-LLAQVSGVDAQLSTQAWTRINEVIAPPAS 114 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +++T + I + +A+L I +GC+ C FC +P +G S Sbjct: 115 QPIPLLETPAPAYADWRSTPI----QRLQPSHSAYLKISDGCNLRCAFCTIPSIKGDMAS 170 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 + + V+ E +L+ GV EI L+ Q++ + R GL T + + + G +RL Sbjct: 171 KPIRAVLGEVEQLVGQGVQEIVLVAQHLTDYGRDLGLQDGLATLLEEMCQIVPHSGWIRL 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P +S+ LI+ + ++ YL +P+Q L+ M R R +I ++R Sbjct: 231 MY--AYPHGISERLIRVMAEHPQVLAYLDMPLQHAHPDTLRRMRRPPDTEHTRAVIQQLR 288 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PD+A+ S FIVG+PGET+ +F+ + ++++ + +F+YS GTP + + +QV Sbjct: 289 AAMPDMALRSTFIVGYPGETNAEFKTLLGFLEEMQLDRVGAFRYSREPGTPAAGLPDQVR 348 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGK--LVGRS----P 433 V R L+ LQ+ + + N VG+ I VLIE HG + G+ +GRS P Sbjct: 349 PKVIERRWHELMQLQQGISRMR---NQRWVGRTIPVLIEAHGATDTGQPLALGRSFRDAP 405 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 + V IG ++ VRIT+ ++G Sbjct: 406 EIDGQVFVWGEAPIGQVVDVRITEAAEYDVWG 437 >gi|153825111|ref|ZP_01977778.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|229527451|ref|ZP_04416843.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae 12129(1)] gi|149741257|gb|EDM55299.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|229335083|gb|EEO00568.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae 12129(1)] gi|327485100|gb|AEA79507.1| Ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae LMA3894-4] Length = 470 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 133/456 (29%), Positives = 225/456 (49%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GYE VNS D+D++++NTC + A ++ +G Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI + P V + GP Y + E + + Sbjct: 96 ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F L + D G A+L I EGC+ CTFC++P RG +SR + ++ Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259 + EA +L + GV E+ ++ Q+ +A+ G+D + + L L ++ Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S R+LK M R A + I Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D + + + FKYSP G + + Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 EQ+ E+VK ER + +Q+++ ++ +G ++VLI++ +E G+ +P Sbjct: 374 EQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430 Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + +V LN + N G+++ V I L+G ++ Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466 >gi|152988570|ref|YP_001349943.1| hypothetical protein PSPA7_4596 [Pseudomonas aeruginosa PA7] gi|238066617|sp|A6VA58|RIMO_PSEA7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|150963728|gb|ABR85753.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 440 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 146/472 (30%), Positives = 224/472 (47%), Gaps = 64/472 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G I E G V+V GC+ E I P V V GPQ Y ++ Sbjct: 65 IGEA-------IAENGK--VIVTGCMG-VEEHAIRDVHPSVLAVTGPQQYEQV------- 107 Query: 144 RFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 V V K E ++D G A+L I EGC+ C+FC++P R Sbjct: 108 -----VTAVHEVVPPKTEHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMR 162 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR + V+ EA +L+ GV E+ ++ Q+ +A W G+ + K Sbjct: 163 GKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKTDFWNGQPV---KTRMK 219 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 +L +L + VRL Y +P + A G L+PYL +P Q S ++LK+M R Sbjct: 220 ELCEALGGMGVWVRLHYVYPYPNVDDVIPLMAAGK---LLPYLDIPFQHASPKVLKAMKR 276 Query: 309 RHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 A+E + + R + P++ I S FIVGFPGET++DF+ +D + + + F+ Sbjct: 277 --PAFEDKTLARFKHWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQ 334 Query: 367 YSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 YSP G P + + LE V + VK ER + Q+ + ++ VG+ IEVLI++ Sbjct: 335 YSPVEGAPANELGLEPVPDEVKQDRWERFMAHQQAISAARLQLK---VGKEIEVLIDEVD 391 Query: 423 KEKGKLVGRSPWLQS------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ VGRS W + V ++S GD ++VRITD L+ E V Sbjct: 392 EQGA--VGRS-WADAPEIDGNVFVDSDALKPGDKVRVRITDADEYDLWAEPV 440 >gi|303253419|ref|ZP_07339561.1| hypothetical protein APP2_2100 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248684|ref|ZP_07530698.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302647663|gb|EFL77877.1| hypothetical protein APP2_2100 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854895|gb|EFM87084.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 443 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 134/459 (29%), Positives = 225/459 (49%), Gaps = 52/459 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ + GY + S ++ADL+++NTC + A ++ +G Sbjct: 11 SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E + I P V + GP +Y + + ++ R Sbjct: 67 ---ALEENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV--MKHVHKYVPRPE 118 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y+ + + + Y A+L I EGCD CTFC++P RG SR + QV Sbjct: 119 RNIYTSLVPAQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMRGDLDSRPIVQV 171 Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255 +DEA++L D+GV E+ ++ Q+ +A W G + T + L SL Sbjct: 172 LDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGAPIKNNLITLCEQLGSLG 231 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 VRL Y +P D LI +L PYL +P+Q S ++LK+M R Sbjct: 232 ---IWVRLHYV--YPYSHVDDLIPLMAQGKIL-PYLDIPLQHASPKVLKAMKRPGAIDRT 285 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + I + R + P++ + S FIVGFPGET++DF+ +D +++ + FK+SP G Sbjct: 286 LERIKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFSPVEGAVA 345 Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430 + M +QV E+VK E R + +Q+++ ++ VG+ + V+I++ +E G+ + Sbjct: 346 TEMADQVPEDVKEERFHRFMQVQQRISAARLQQK---VGKTLAVIIDEIDEEGIIGRSMA 402 Query: 431 RSPWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 +P + VV L+ + +G +I V IT+ L+G Sbjct: 403 DAPEIDGVVYVDNLSEQEVKVGQVISVSITNADEYDLWG 441 >gi|115372357|ref|ZP_01459666.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|115370570|gb|EAU69496.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] Length = 469 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 130/453 (28%), Positives = 219/453 (48%), Gaps = 29/453 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++ + GC N DS M +GY V +A +IV+NTC A ++ + Sbjct: 8 LYMMTLGCPKNRVDSEVMLGTLKQRGYRLVQEPAEAQVIVVNTCAFIGPAKQESVDSILE 67 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + K S G +VV GC++Q G E+ + P V+ +G Y ++ +LL Sbjct: 68 MAEYKKS----GACSTLVVTGCLSQRHGGELAQEMPEVDHFLGTSAYAQIGDLLAAEASP 123 Query: 147 KRVV-DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++V+ D DY + R N TA+L + EGCD C FC++P RG + SR Sbjct: 124 RQVIPDPDYIHNAETPR-------ENSMPSYTAYLKVSEGCDNACAFCIIPTLRGGQRSR 176 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264 ++ ++ EA +L D GV E+ L+ Q++ A+ G L G K DLL L ++ +RL Sbjct: 177 PIADIIAEATRLADQGVQELNLVAQDLTAY-GHDLPG-KPKLHDLLKELVKVDVRWIRLH 234 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y ++PR D LI+ + YL +P+Q SD++L SM R + ++ ++R+ Sbjct: 235 Y--AYPRIFPDELIEVMATEKKIAKYLDMPLQHASDKLLTSMKRGRNSQFLTDLLAKLRA 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P + + + IVG PGET++DF + V + + F+YS GT +M ++ + Sbjct: 293 RVPGLVMRTSLIVGLPGETEEDFELLKEFVKTQRFERLGVFQYSDEEGTAAYDMPNKIPQ 352 Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQ 436 R ++ +QK++ +Q N VG+ IEVL+E E G+ G++P + Sbjct: 353 KTIERRWREIMAIQKRINREQ---NKKLVGKRIEVLVEGTSPETEHLLVGRHEGQAPEID 409 Query: 437 -SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V +N G+ + + +T+ L G +V Sbjct: 410 GQVYINDGLAYPGEFVTLEVTEAHDYDLVGRVV 442 >gi|213962370|ref|ZP_03390633.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] gi|213955036|gb|EEB66355.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] Length = 436 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 141/455 (30%), Positives = 228/455 (50%), Gaps = 47/455 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87 V + GC NVYDS + + G E V+ + +++V+NTC I E + + L + Sbjct: 13 VVTLGCSKNVYDSEVLMGQLKAGGKEVVHE-KEGNIVVINTCGFINNAKEESINTILDYV 71 Query: 88 RNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + KE G + V V GC+++ ++ + P V+ G LP LL Sbjct: 72 QQ------KEAGLVDKVFVMGCLSERYKPDLEKEIPDVDQYFGTS---ELPALL------ 116 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +V+ DY E ERL+ Y A+L I EGCD+ C+FC +P RG IS S Sbjct: 117 -KVLGADYKHELIGERLTTTPKNY-------AYLKISEGCDRPCSFCAIPLMRGAHISTS 168 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRL 263 + +V EA KL GV E+ L+ Q++ + GLD +K +DLL +L +++G+ +R+ Sbjct: 169 IKDLVTEAEKLAAKGVKELILIAQDITYY---GLDLYKKRALADLLRALVKVEGIEWIRI 225 Query: 264 RYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 Y T P D+ + ++KA + YL +P+Q SD+IL SM R T + +++ + Sbjct: 226 HYAFPTGFPMDVLE-VMKAEPKI---CNYLDIPLQHISDKILTSMKRGTTQEKTTKLLKK 281 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R P++AI + IVG+PGET++DF+A + V + + + F YS T + + Sbjct: 282 FREAVPEMAIRTTLIVGYPGETEEDFQALKEFVKAMRFDRLGCFTYSHEENTTAYELADD 341 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW-----LQ 436 V E VK +R + + + N A VG++ LI++ KE VGR+ + Sbjct: 342 VPEEVKLQRANEIMELQSQISWELNQAKVGKVFRCLIDR--KEGNYFVGRTEYDSPDVDN 399 Query: 437 SVVLNSKNH--NIGDIIKVRITDVKISTLYGELVV 469 V++++K H IGD V+I + LYGE + Sbjct: 400 EVLIDAKKHYVKIGDFTDVKIIEAADYDLYGEPIT 434 >gi|84489190|ref|YP_447422.1| 2-methylthioadenine synthetase [Methanosphaera stadtmanae DSM 3091] gi|84372509|gb|ABC56779.1| predicted 2-methylthioadenine synthetase [Methanosphaera stadtmanae DSM 3091] Length = 424 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 127/449 (28%), Positives = 236/449 (52%), Gaps = 32/449 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + +++++GC N D+ M ++ ++ Y+ V +++AD+I+LNTC+++ +K+ + Sbjct: 2 KIYLETHGCTFNQADTDIMANIL-AKKYDIVYDVEEADVIILNTCYVKLPTEQKM---IT 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +IR K E D +++ GC+ + + + L + + +GP ++ E++E+A Sbjct: 58 KIRKYKT----EFPDKKLIIGGCMVEVDDKR-LEKFAGDDCWIGPHKLDKVDEVVEKAIN 112 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+ V ++ + + G +K + L I EGC+ CTFC RG I Sbjct: 113 GEVV--------HEYGKTRAIKAGKGKKNSESLVHILQICEGCNGQCTFCCTRIARGFLI 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 S + +V+EA+ +++G E+ + Q+ + G+D GE +F+DLL L I+G R Sbjct: 165 SYPIDVIVEEAKDAVEHGCKELQVTAQDTACF---GMDTGE--SFADLLNKLGAIEGDFR 219 Query: 263 LRYTTSHPRDMSDCL---IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +R +P+ + + L I A + D + ++HLP+QSGS ++LK MNR+HT EY+ I+ Sbjct: 220 IRVGMMNPQSIKNQLHEVIDAFKNNDKIFNFVHLPIQSGSPKVLKEMNRKHTLDEYKYIL 279 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R P +++++D IVG+P ET++DF T++L+ +I KY R G SN L Sbjct: 280 NEFRKEIPQMSLATDIIVGYPTETEEDFNQTLELLKEIKPDIVHISKYMHRPGAK-SNHL 338 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 +++D N+ R + + E + N I VLI G G VG + ++V+ Sbjct: 339 KEIDHNIMKNRSHRVNQVKTEVMLEKNKEYENTIQNVLITSKG-SSGGYVGYTDSYKNVI 397 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ IG + V+I + K + L + + Sbjct: 398 VDEA--EIGSFMDVKIIEGKRTYLLAQRI 424 >gi|311280283|ref|YP_003942514.1| MiaB-like tRNA modifying enzyme YliG [Enterobacter cloacae SCF1] gi|308749478|gb|ADO49230.1| MiaB-like tRNA modifying enzyme YliG [Enterobacter cloacae SCF1] Length = 441 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 138/458 (30%), Positives = 232/458 (50%), Gaps = 43/458 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V S D+AD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPSYDNADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G +KE G V+V GC+ E ++I P V + GP +Y ++ L Sbjct: 67 IGEA-------LKENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQV--LQHVH 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + + LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 115 HYVPKPQHNPF--------LSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDL 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254 SR + V+ EA++L D GV E+ ++ Q+ +A+ R +GE K + L L Sbjct: 167 DSRPIGDVLAEAKRLADAGVKELLVISQDTSAYGVDVKHRTGFYNGEPVKTSMVSLCEQL 226 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 +++ VRL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 227 AKLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVDR 283 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 I + R + P++ + S FIVGFPGET+DDF+ +D + + + FKYSP G Sbjct: 284 QLARIKQWREICPELTLRSTFIVGFPGETEDDFQMLLDFLKEARLDRVGCFKYSPVEGAA 343 Query: 375 GSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429 + + +QV E VK E R + LQ+++ +++ +G+ I V+I++ +E G+ + Sbjct: 344 ANELADQVPEEVKEERWNRFMQLQQQISAERLQEK---IGREIMVIIDEVDEEGAIGRSM 400 Query: 430 GRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465 +P + +V LN + GD+++V++ L+G Sbjct: 401 ADAPEIDGAVYLNGETRVKPGDVLRVKVEHADEYDLWG 438 >gi|118431496|ref|NP_148004.2| MiaB-like protein [Aeropyrum pernix K1] gi|116062821|dbj|BAA80529.2| MiaB homolog [Aeropyrum pernix K1] Length = 450 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 134/431 (31%), Positives = 219/431 (50%), Gaps = 26/431 (6%) Query: 24 PQR-FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P R ++++ YGC ++ +D+L M GY RV +DAD+I++NTC +R +++ Sbjct: 16 PSRTYYLEVYGCSLSEFDALIMASRLEEAGYRRVARPEDADVILVNTCAVRLDTEQRIAE 75 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L ++R + D VVAGC+ +A + R P +++ PQ R+ + ++ Sbjct: 76 RLEKLR-------LQLPDRKYVVAGCLVKARPGLVARLVPEASLL-APQAVERVLDAVDA 127 Query: 143 ARFGKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G+R+V D + + +L I D + IQEGC C+FC+ R Sbjct: 128 LESGRRLVVLDGRRDTRSMPQLPITDA--------VVTVMIQEGCLGDCSFCITKVARRQ 179 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGL 260 S S +V+ R+ ++ G EI L G +V + G L G K +DL+ + L +++G Sbjct: 180 VRSYSPRVIVERVREAVEKGAREIRLTGTDVAVY-GVDLPG-KPNLADLVAAILEKVEGD 237 Query: 261 VRLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 R+R P + D L+ + D V Y HLPVQSG D +LK M R +T EY+ Sbjct: 238 YRIRVGMMTPDQVEPYLDSLLDVYRDERVYK-YFHLPVQSGDDEVLKIMKRNYTVSEYKA 296 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 I RI+S PD I++D IVG PGET + F T+ LV+++ + + +YS R T ++ Sbjct: 297 IHRRIKSRFPDAMIATDIIVGHPGETWEAFWNTVRLVEELRFEKVHLAQYSLRPHTEAAS 356 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 M EQV ++VK ER L K + E + N + VG+ + L+ + +G + GR Sbjct: 357 M-EQVPDSVKKERSRILGKIVAEIGLEINGSYVGRRVRALVTERSWREGSMTGRLDNYTP 415 Query: 438 VVLNSKNHNIG 448 ++L + +G Sbjct: 416 IILPYEERAMG 426 >gi|256842238|ref|ZP_05547742.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13] gi|301308989|ref|ZP_07214934.1| Fe-S oxidoreductase [Bacteroides sp. 20_3] gi|256736122|gb|EEU49452.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13] gi|300833015|gb|EFK63640.1| Fe-S oxidoreductase [Bacteroides sp. 20_3] Length = 444 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 125/403 (31%), Positives = 202/403 (50%), Gaps = 22/403 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + QG +V + AD+ V+NTC + E A +K + RI Sbjct: 16 TLGCKLNFAETSTIGKLLAEQGVRKVRPGEKADICVVNTCSVTELADKKCRQAIRRIS-- 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---ELLERARFGK 147 K+ +VV GC AQ + EE+ V++V+G + + E LE+ G Sbjct: 74 -----KQHPGAFIVVTGCYAQLKPEEVSHIEG-VDLVLGAEQKLEILQYLENLEKKEHGG 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 V+ + F D +R R FL +Q+GCD +C++C +P+ RG + ++ Sbjct: 128 TVIASQSKDIRSFSPSCSAD---DRTR---HFLKVQDGCDYYCSYCTIPFARGRSRNGTI 181 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++A+++ G EI L G N+ + GK D TF DL+ +L E++G+VR R ++ Sbjct: 182 ASMVEQAQEVARKGGKEIVLTGVNIGDF-GKSTDE---TFIDLIRALDEVEGIVRYRISS 237 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D I P+ H+P+QSGSD +L+ M RR+ +R I++I+ V P Sbjct: 238 IEPNLITDEAIDFVAHSKRFAPHFHIPLQSGSDAVLQLMRRRYDTALFRHKIEKIKEVMP 297 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 I D IVG GETD+ F +D + +Q F YS R GT + VD K Sbjct: 298 HAFIGVDVIVGTRGETDEYFEEARQFIDSLDISQLHVFSYSERPGTQALKIDYVVDPKTK 357 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 R L ++ +F +A +GQ VL E H K+ GK+ G Sbjct: 358 HARSQQLLDISDQKLHAFYEAHIGQEANVLFE-HTKKDGKMHG 399 >gi|254302942|ref|ZP_04970300.1| 2-methylthioadenine synthetase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323134|gb|EDK88384.1| 2-methylthioadenine synthetase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 435 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 131/450 (29%), Positives = 225/450 (50%), Gaps = 42/450 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ +++ +GYE V D +D+ ++N+C + A K + L R + + Sbjct: 11 TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138 D V+V GC AQ EIL +S IVN V + Sbjct: 71 -------NPDAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ER + G + +Y E +F L + A++ IQ+GC+ FC++C +P+ Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEI 257 RG SR ++ E KL+++G E+ L+G +++A+ G D EK F LL + +I Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY---GEDFKEKDNFESLLEEILKI 225 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 K L R+R + +P ++D I+ + + LMP+LH+ +QS D +LK+M R + + R+ Sbjct: 226 KNLKRVRIGSVYPDKITDRFIELFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSSLIRE 284 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + +++S ++ ++D IVGFP E + F+ T D++ +I ++ F+YS R GT SN Sbjct: 285 SLLKLKSKVENMEFTADVIVGFPKEDETMFQNTHDVIKEIEFSGLHIFQYSDREGTIASN 344 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 M +VD K +R L +E V + + +EVL+E+ + G+ G S Sbjct: 345 MDGKVDAKTKKQRADRLDNLKQEMIVESRKKYLEKNLEVLVEEE--KDGEYFGYSQNYLR 402 Query: 438 VVLNSKNHN-IGDIIKVRITDVKISTLYGE 466 V S + I +I ++I V+ L GE Sbjct: 403 VKFKSDEKDLINKLINIKIKCVENDMLIGE 432 >gi|109898153|ref|YP_661408.1| MiaB-like tRNA modifying enzyme YliG [Pseudoalteromonas atlantica T6c] gi|123064681|sp|Q15UT4|RIMO_PSEA6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|109700434|gb|ABG40354.1| SSU ribosomal protein S12P methylthiotransferase [Pseudoalteromonas atlantica T6c] Length = 473 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 131/415 (31%), Positives = 208/415 (50%), Gaps = 42/415 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY+ VN+ +DADL+++NTC + A ++ +G Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYDVVNTYNDADLVIVNTCGFIDTAVQESLDTIGEA--- 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + E G V+V GC+ E +EI P V + GP Y E++ + + + Sbjct: 96 ----LAENGK--VIVTGCLGIKE-DEIREVHPNVLAITGPHAYE---EVVNQVH--EHLP 143 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y + + L + D G A+L I EGC+ CTFC++P RG +SR + ++ Sbjct: 144 QPSY---NPYMNL-VPDIGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 +DEA++L + GV E+ ++ Q+ +A W G + K ++L L E+ Sbjct: 200 LDEAQRLKNAGVKELLVISQDTSAYGVDVKNKMGFWNGMPV---KTGMTELCEKLGEMGM 256 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S RILK M R A + I Sbjct: 257 WVRLHYVYPYPSVDKVMPLMASGKV---LPYLDIPFQHASPRILKLMKRPAAAERTMERI 313 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D +D + FKYS G +++ Sbjct: 314 KKWRELCPELVIRSTFIVGFPGETEEDFQMLLDFLDDAQLERVGCFKYSDVEGAKANDLP 373 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRS 432 + V E VK ER +K +QQ+S +G I+VLI++ +E +GRS Sbjct: 374 DPVSEEVKQERFERFMQK--QQQISSAKLQRRIGSTIQVLIDEVDEEGA--IGRS 424 >gi|326561620|gb|EGE11958.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis 46P47B1] Length = 458 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 132/429 (30%), Positives = 213/429 (49%), Gaps = 43/429 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ N+ D ADL+V+NTC E A ++ Sbjct: 10 PKIGFV-SLGCPKALVDSERIITELTYEGYQVANNYDGADLVVVNTCGFIESAVQESLDA 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N KN + V+V GC+ + + E+I P V V G Y + + Sbjct: 69 IGEAIN-KNGK--------VIVTGCLGK-DAEKIRTMHPAVLAVTGAHAYEEVISAVNH- 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K + +Y + K + ++ D G A++ I EGC+ CTFC++P RG + Sbjct: 118 HVPKPIKSKEY--DPKIDLIN--DAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDLV 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V+ EA L +GV E+ ++ Q+ +A W G L K F D+ Sbjct: 174 SRPIDSVMKEAVALKKSGVKELLVISQDTSAYGVDLKYKTVFWEGWPL---KSKFYDMCE 230 Query: 253 SLSEIKGLVRLRYTTSHP------RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 ++S++ VRL Y +P + M+D + + G + L+PYL +P Q S +LK+M Sbjct: 231 AMSKLGIWVRLHYVYPYPHVDAVVQIMADSMTASAG-MGGLLPYLDIPFQHASPNVLKAM 289 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + + I R++ PDI I S F+VGFPGETD+DF +D + K + F Sbjct: 290 KRPAMSENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCFT 349 Query: 367 YSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 YS G +++ V E+VK ERL+ LQ+K+ ++++ VG+ + VL+++ Sbjct: 350 YSEIEGAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEK---VGKTLVVLVDEIDT 406 Query: 424 EKGKLVGRS 432 E+ + RS Sbjct: 407 EENIAICRS 415 >gi|239616755|ref|YP_002940077.1| MiaB-like tRNA modifying enzyme [Kosmotoga olearia TBF 19.5.1] gi|239505586|gb|ACR79073.1| MiaB-like tRNA modifying enzyme [Kosmotoga olearia TBF 19.5.1] Length = 425 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 121/392 (30%), Positives = 206/392 (52%), Gaps = 28/392 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y++ M ++ + + AD+ V+N+C + +A K+ R++ Sbjct: 9 TFGCKLNQYETEGMAELL-QNDFRVTFDSEIADIFVINSCTVTAEAERKLRQLYRRLK-- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K G V+V GC ++ E+ + ++++G + ++ E L+ Sbjct: 66 ----AKNPGSKFVIV-GCYSELSAGEL--KDLGFDLILGIKDKLKIKEFLKEN------- 111 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQ 209 + ++D F+ + G Y R R A++ IQ+GC C++C + RG +I S+ Sbjct: 112 TENTCIKDYFQ---VTKGPYGRTR---AYIGIQDGCLNNCSYCRIRLARGNKIISKPPEV 165 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 V +E + L+++G EI L G N+ + G GE + LL L +I+G RLR ++ Sbjct: 166 VAEELKTLVEHGFQEIVLTGINIGFY---GF-GEGYSLISLLKQLVKIEGEWRLRLSSLD 221 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 PR +S+ LI D + ++HL +QSGSD++LKSMNR +T + QI+ RS Sbjct: 222 PRLVSNELITFMTDNPKIAQHVHLSLQSGSDKVLKSMNRNYTTNDVEQIVALFRSRNNRF 281 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 + ++D IVGFPGETD DF T++ V +I + + F++SPR GT + M Q+ N+K E Sbjct: 282 SFTTDVIVGFPGETDTDFVETLEFVKRIRFLKVHIFRFSPRPGTKAARMSNQISGNIKKE 341 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 R L+K E + + VG+ VLIEK+ Sbjct: 342 RATVLKKVALEASKDYLNEHVGKESTVLIEKN 373 >gi|33152883|ref|NP_874236.1| hypothetical protein HD1896 [Haemophilus ducreyi 35000HP] gi|81423187|sp|Q7VKK2|RIMO_HAEDU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|33149108|gb|AAP96625.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 443 Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 135/466 (28%), Positives = 227/466 (48%), Gaps = 51/466 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP F+ S GC N+ DS R+ S GY + S ++ADL+++NTC + A ++ Sbjct: 4 VPNIGFI-SLGCPKNLVDSERILTELRSDGYNIIPSYENADLVIVNTCGFIDSAVQESLE 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +KE G V+V GC+ E + I P V + GP +Y + + + + Sbjct: 63 AVGE-------ALKENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAVMQHVHK 112 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + R Y+ + + + Y A+L I EGCD CTFC++P RG Sbjct: 113 --YVPRPERNMYTSLVPAQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMRGDL 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTF 247 SR + Q++DEA++L D+GV E+ ++ Q+ +A W G + K Sbjct: 164 DSRPIVQILDEAKRLADSGVKELLIVSQDTSAYALDQTKENQNKTVFWNGVPI---KNNL 220 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 L L+ + +RL Y +P + + A G + +PYL +P+Q S +ILK+M Sbjct: 221 ISLCEQLATLGIWIRLHYVYPYPHVDNLIPLMAEGKI---LPYLDIPLQHASPKILKAMK 277 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + + I + R + P++ + S FIVGFPGET++DF+ +D + + + FK+ Sbjct: 278 RPGSIDRTLERIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLTEAQLDRVGCFKF 337 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 SP G + M EQV E VK ER + + V+ +G+ + ++I++ ++ Sbjct: 338 SPVDGAVATEMAEQVPEEVKEERFHRFMQVQQRISVARLQQKIGKTLAIIIDE--IDEYG 395 Query: 428 LVGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 ++GRS P + VV ++ + +G II V IT+ L+G Sbjct: 396 IIGRSMADAPEIDGVVYVDNISQQAVTVGQIILVTITNADEYDLWG 441 >gi|257462828|ref|ZP_05627234.1| Fe-S oxidoreductase [Fusobacterium sp. D12] gi|317060457|ref|ZP_07924942.1| Fe-S oxidoreductase [Fusobacterium sp. D12] gi|313686133|gb|EFS22968.1| Fe-S oxidoreductase [Fusobacterium sp. D12] Length = 436 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 131/443 (29%), Positives = 231/443 (52%), Gaps = 24/443 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + GC++N Y+S +++ +GYE V AD+ ++N+C + A K + L Sbjct: 5 KRVAFYTLGCKVNQYESESIKNQLLQKGYEEVGFETTADVYIVNSCTVTSIADRKTRNML 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + K+ V+V GC A+ +++L I + V+G + + +E Sbjct: 65 RRAK-------KQNPLGKVIVTGCYAETNRKDLLEMEEI-DFVIGNKDKNAVANFVEEIH 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEI 203 +R E F+ + + R +T A++ IQ+GC++FC++C +P+ RG Sbjct: 117 NQER----GEREESIFQEKEYQEYEFATFREMTRAYVKIQDGCNEFCSYCKIPFARGRSR 172 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +V++E KL+ G EI L+G N+ + GK L E+ F DL+ ++ + L R+ Sbjct: 173 SRRPEKVLEEIDKLLVEGFREIILIGINLGDY-GKDLK-EEINFEDLVRNILKKDLLQRV 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R + +P +++ + D +MP+LH+ +QS D +L++M R + + + +R Sbjct: 231 RIGSVYPDRITESFMTLF-DHPKMMPHLHISLQSCDDTVLRNMRRNYGKDVILKTLFSLR 289 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P + ++D IVGFPGET++ F+ T D ++KIG++ F YS R GT S M ++ Sbjct: 290 KKVPMMEYTADVIVGFPGETEEMFQNTYDSLEKIGFSHLHIFPYSDREGTIASRMEHKIQ 349 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 VK ER L LQKK+ E + + +G+ +EVLIE+ ++ G G SP V + Sbjct: 350 TGVKRERVGILENLQKKIEEDRRKY---YLGKRLEVLIEE--EKDGYWWGYSPNYLRVKI 404 Query: 441 NSKNHNIGDIIKVRITDVKISTL 463 KN +I +++V++ V+ L Sbjct: 405 RGKNLSINSMVQVKVEQVEKGVL 427 >gi|182417560|ref|ZP_02626322.2| conserved hypothetical protein [Clostridium butyricum 5521] gi|237667762|ref|ZP_04527746.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378573|gb|EDT76101.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237656110|gb|EEP53666.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 464 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 131/441 (29%), Positives = 224/441 (50%), Gaps = 36/441 (8%) Query: 31 SYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 S GC N DS + + +M S+ Y N+ +AD++++NTC E A ++ + + + Sbjct: 28 SLGCDKNRVDSEIILGNM--SRDYTITNNPKEADILIVNTCGFIESAKQESIDTILEMAD 85 Query: 90 LK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 K N + K L++ GC+ Q EE+ P +++++G Y ++ ++ G Sbjct: 86 YKVNYKCK-----LLIATGCLIQRYSEELGELIPELDLMLGVNDYDKINSVITNFINGN- 139 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGV------TAFLTIQEGCDKFCTFCVVPYTRGIE 202 E K ++ D G N + +A++ I EGC+ FCT+C++P RG Sbjct: 140 --------EKKEGLVNYTDEGINEGSRILTTQKGSAYIRIAEGCNNFCTYCIIPKIRGKF 191 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + ++ EA +L G+ E+ L+ Q+ + G + G+K +LL LS+I+G+ Sbjct: 192 RSRKMENILKEAEELASQGIKELILIAQDTTMY-GSDIYGKK-NLHELLNELSKIEGIEW 249 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R +P ++ D LI + ++ YL LP+Q S+ +LK M R+ T + ID + Sbjct: 250 IRVLYCYPEEIYDELIDEMAQNNKVVKYLDLPIQHISNHVLKLMGRKTTKEAILKKIDTL 309 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P + I + FIVGFP ET++DF D + + F YS TP + M Q+ Sbjct: 310 RERIPGMIIRTTFIVGFPQETEEDFNEIKDFLQDYKLEKVGVFTYSQEENTPAARMDGQI 369 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQS 437 DE VK +R L+ LQK + E+ N+ +G+I ++L+E + E +G+ +P + + Sbjct: 370 DEEVKKQREKDLMLLQKGISEK---INELKIGKIYDILVEGYDGEDYRGRSYEMAPEIDA 426 Query: 438 VVLNSKNHN--IGDIIKVRIT 456 V N N IG +KV+IT Sbjct: 427 EVFFKCNDNLEIGTFVKVKIT 447 >gi|319407229|emb|CBI80868.1| putative enzyme [Bartonella sp. 1-1C] Length = 437 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 147/463 (31%), Positives = 222/463 (47%), Gaps = 43/463 (9%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + P+ FV S GC + DS R+ S+GYE N ADL+++NTC + A ++ Sbjct: 2 VAPRISFV-SLGCPKALVDSERIITRLRSEGYEISNKHKGADLVIVNTCGFIDSARKESL 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + + + IK G V+V GC+ AE IL+ P V + GPQ Y E + Sbjct: 61 ANI-------DEAIKNNGK--VIVTGCLG-AEPNIILQAHPNVLAITGPQDY----ESVI 106 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 RA V V D F L G R A+L I EGC C+FC++P RG Sbjct: 107 RA-----VHTVIPPVHDPFLDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLRGN 160 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 ISR +S V+ EA KL+ GV E+ ++ Q+ A W+ + + K F DL Sbjct: 161 LISRPISDVLREAEKLVLAGVKELLVISQDTGAYGIDLKYAASVWQNRVI---KTKFLDL 217 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L E+ VR+ Y +P + A G ++PYL +P Q S +L++M R Sbjct: 218 CRELGEMGIWVRMHYVYPYPHIDEAIELMAAGK---ILPYLDIPFQHASPNVLRNMKRPA 274 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + + I+R R + PD+ + S FIVGFPGET++DF ++ +++ +A FKY Sbjct: 275 HVEKISRRIERWREICPDLTLRSTFIVGFPGETNEDFNMLLEWLEEAKIERAGCFKYEAV 334 Query: 371 LGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK-EKGK 427 G +N+ LE + E VK +R K ++ +G+ ++VLI E GK KG+ Sbjct: 335 KGAVANNLGLENIAEEVKEKRWHRFMTKQQKISAHLLKKKIGKRLQVLIDETQGKIAKGR 394 Query: 428 LVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGELV 468 SP + +V S K IG+ + V+I LYG ++ Sbjct: 395 SKYDSPEIDGIVHISSRKPLRIGEFVTVKIEQSDSYDLYGNVI 437 >gi|296112956|ref|YP_003626894.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis RH4] gi|295920650|gb|ADG61001.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis RH4] Length = 504 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 132/430 (30%), Positives = 213/430 (49%), Gaps = 43/430 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ +GY+ N+ D ADL+V+NTC E A ++ Sbjct: 55 TPKIGFV-SLGCPKALVDSERIITELTYEGYQVANNYDGADLVVVNTCGFIESAVQESLD 113 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N KN + V+V GC+ + + E+I P V V G Y + + Sbjct: 114 AIGEAIN-KNGK--------VIVTGCLGK-DAEKIRTMHPAVLAVTGAHAYEEVISAVNH 163 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K + +Y + K + ++ D G A++ I EGC+ CTFC++P RG Sbjct: 164 -HVPKPIKSKEY--DPKIDLIN--DAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDL 218 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR + V+ EA L +GV E+ ++ Q+ +A W G L K F D+ Sbjct: 219 VSRPIDSVMKEAVALKKSGVKELLVISQDTSAYGVDLKYKTVFWEGWPL---KSKFYDMC 275 Query: 252 YSLSEIKGLVRLRYTTSHP------RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 ++S++ VRL Y +P + M+D + + G + L+PYL +P Q S +LK+ Sbjct: 276 EAMSKLGIWVRLHYVYPYPHVDAVVQIMADSMTASAG-MGGLLPYLDIPFQHASPNVLKA 334 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R + + I R++ PDI I S F+VGFPGETD+DF +D + K + F Sbjct: 335 MKRPAMSENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCF 394 Query: 366 KYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 YS G +++ V E+VK ERL+ LQ+K+ ++++ VG+ + VL+++ Sbjct: 395 TYSEIEGAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEK---VGKTLVVLVDEID 451 Query: 423 KEKGKLVGRS 432 E+ + RS Sbjct: 452 TEENIAICRS 461 >gi|262401907|ref|ZP_06078472.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio sp. RC586] gi|262351879|gb|EEZ01010.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio sp. RC586] Length = 470 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 133/456 (29%), Positives = 225/456 (49%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GYE VNS D+D++++NTC + A ++ +G Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI + P V + GP Y + E + + Sbjct: 96 ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F L + D G A+L I EGC+ CTFC++P RG +SR + ++ Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259 + EA +L + GV E+ ++ Q+ +A+ G+D + + L L ++ Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S R+LK M R A + I Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAKGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D + + + FKYSP G + + Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 EQ+ E+VK ER + +Q+++ ++ +G ++VLI++ +E G+ +P Sbjct: 374 EQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430 Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + +V LN + N G+++ V I L+G ++ Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466 >gi|256111519|ref|ZP_05452533.1| MiaB-like tRNA modifying enzyme YliG [Brucella melitensis bv. 3 str. Ether] gi|265993015|ref|ZP_06105572.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|262763885|gb|EEZ09917.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] Length = 437 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 152/464 (32%), Positives = 225/464 (48%), Gaps = 47/464 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ S+GYE D ADL+++NTC + A ++ Sbjct: 3 APRVSFV-SLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLE 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N E G V+V GC+ AE + I R P V + GPQ Y E + Sbjct: 62 AIGLALN-------ENGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAY----ESVMN 107 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A V + D F L G R A+L I EGC C+FC++P RG Sbjct: 108 A-----VHEVAPPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDL 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251 +SR +++V+ EA KLI GV EI ++ Q+ +A+ GLD + + F DL Sbjct: 162 LSRPINEVLREAEKLIQAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDLS 218 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L E+ VR+ Y +P + A G + +PYL +P Q S +LK+M R Sbjct: 219 RELGEMGVWVRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPAVLKNMRRPAH 275 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + + I R PD+A+ S FIVG+PGET++DF+ +D +D+ +A FKY Sbjct: 276 QEKTSRRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKYEAVK 335 Query: 372 GTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKL 428 G +++ LEQV E VK R K +QQ+S N VG+ + V+I++ GK Sbjct: 336 GAKANDLGLEQVPEEVKEARWHRFMAK--QQQISTNLLKKKVGKRLPVIIDEANGTIGKG 393 Query: 429 VGR--SPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 R +P + SV ++S+ +GDI+ V+I L+G V Sbjct: 394 RTRYDAPEIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 437 >gi|319404219|emb|CBI77812.1| putative enzyme [Bartonella rochalimae ATCC BAA-1498] Length = 437 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 147/463 (31%), Positives = 222/463 (47%), Gaps = 43/463 (9%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + P+ FV S GC + DS R+ S+GYE N ADL+++NTC + A ++ Sbjct: 2 VAPRISFV-SLGCPKALVDSERIITRLRSEGYEISNKHKGADLVIVNTCGFIDSARKESL 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + + + IK G V+V GC+ AE IL+ P V + GPQ Y E + Sbjct: 61 ANI-------DEAIKNNGK--VIVTGCLG-AEPNIILQAHPNVLAITGPQDY----ESVI 106 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 RA V V D F L + G R A+L I EGC C+FC++P RG Sbjct: 107 RA-----VHTVIPPVHDPFLDLVPLQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLRGN 160 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 ISR +S V+ EA KL+ GV E+ ++ Q+ A W+ + + K F DL Sbjct: 161 LISRPISDVLREAEKLVLAGVKELLVISQDTGAYGIDLKYAESVWQNRVI---KTKFLDL 217 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L E+ VR+ Y +P + A G ++PYL +P Q S +L++M R Sbjct: 218 CRELGEMGIWVRMHYVYPYPHIDEAIELMAAGK---ILPYLDIPFQHASPNVLRNMKRPA 274 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + + I+R R + PD+ + S FIVGFPGET++DF ++ +++ +A FKY Sbjct: 275 HVEKISRRIERWREICPDLTLRSTFIVGFPGETNEDFNMLLEWLEEAKIERAGCFKYESV 334 Query: 371 LGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK-EKGK 427 G +N+ LE + E VK +R K ++ +G+ ++VLI E GK KG+ Sbjct: 335 KGAVANNLGLENIAEEVKEKRWHRFMTKQQKISAHLLKKKIGKRLQVLIDETQGKIAKGR 394 Query: 428 LVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGELV 468 SP + VV S K IG+ + +I LYG ++ Sbjct: 395 SKYDSPEIDGVVHISSRKPLRIGEFVTAKIEQSDSYDLYGNVI 437 >gi|257451722|ref|ZP_05617021.1| hypothetical protein F3_01564 [Fusobacterium sp. 3_1_5R] gi|317058281|ref|ZP_07922766.1| radical SAM-superfamily protein [Fusobacterium sp. 3_1_5R] gi|313683957|gb|EFS20792.1| radical SAM-superfamily protein [Fusobacterium sp. 3_1_5R] Length = 444 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 127/441 (28%), Positives = 227/441 (51%), Gaps = 32/441 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 F + S GC N+ DS + + + +G++ N +++ADL+++NTC A ++ + Sbjct: 3 FALISLGCSKNLVDSENLTGILVNRKGFQLTNEIEEADLVLINTCGFIGDAKKESIETIL 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + K R+K+ +VV GC+AQ EE+L+ P ++ V+G ++ +++ Sbjct: 63 EVAEYKQERLKK-----IVVCGCLAQRYAEELLQEIPEIDAVIGTGEIDKIESVVDEILQ 117 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIE 202 K+ V+T F L D +R TA+L I EGC++ CT+C++P RG Sbjct: 118 DKKAVETS-----SFHFLPNADT--DRVLTTPPHTAYLKISEGCNRRCTYCIIPQLRGDL 170 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLV 261 SR+ +++EA++L+ GV E+ LL Q + G+D K DLL L +I+GL Sbjct: 171 RSRTKEDILEEAKRLVSGGVRELNLLAQETTEY---GIDNYGKKALPDLLRELVKIEGLD 227 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R PR ++D LI+ + + Y +P+Q S +L+ M R T + ++++ + Sbjct: 228 WIRTYYMFPRSITDELIEVMKQEEKICKYFDIPIQHISSNMLRRMGRAITGEQTKELLYK 287 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR P+ + IVGFPGET+++F+ D V++ + F+YS T M Q Sbjct: 288 IRKEIPEAVFRTSLIVGFPGETEEEFQELKDFVEEFQFDYIGVFQYSREEDTVAYTMENQ 347 Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSP 433 + E VK R ++ LQ ++ E S N +G+ +EVLI+ E +G+L ++ Sbjct: 348 IPEEVKERRQAEIINLQNEIAE---SKNRKLLGREVEVLIDGISSESEYMLEGRLKTQAL 404 Query: 434 WLQSVVLNSK-NHNIGDIIKV 453 + VL S+ +G+++++ Sbjct: 405 DIDGKVLTSEGTAQVGEMVRI 425 >gi|187933390|ref|YP_001885483.1| hypothetical protein CLL_A1285 [Clostridium botulinum B str. Eklund 17B] gi|238065363|sp|B2TJ67|RIMO_CLOBB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|187721543|gb|ACD22764.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund 17B] Length = 446 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 132/436 (30%), Positives = 226/436 (51%), Gaps = 28/436 (6%) Query: 31 SYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 S GC N DS + + M S YE N+ +AD+I++NTC E A ++ + + Sbjct: 10 SLGCDKNRVDSEIILGKM--SNEYEITNNAKEADVIIVNTCGFIESAKQESIDTILEMAE 67 Query: 90 LKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 KN+ + K L++ GC+ Q G+E+ P +++++G Y ++ ++++ G + Sbjct: 68 YKNNYKCK-----LLIATGCLIQRYGDELKNLIPEIDIMLGVNDYNKIDKVIKEFIEGNK 122 Query: 149 VVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +YS E+ E I+ + +A++ I EGC+ FCT+C++P RG SR Sbjct: 123 EASKLLNYSDENINEGNRIL-----TTQKESAYIRIAEGCNNFCTYCIIPKIRGKFRSRR 177 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + ++ EA L GV E+ L+ Q+ + G + G+K LL LS+I+G+ +R Sbjct: 178 MENIISEATDLASQGVKELILIAQDTTQY-GSDIYGKK-NLHVLLKELSKIEGIKWIRVL 235 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + D LI+ + ++ YL +P+Q SD +LK M R+ + + I+++R Sbjct: 236 YCYPEAIYDELIEEIAVNEKVVKYLDIPIQHISDHVLKLMGRKTSKKDITDKIEKLRKSI 295 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P+I I + FIVGFP ET +DF ++ + + + FKYS TP S M Q+DE + Sbjct: 296 PNIIIRTTFIVGFPQETQEDFEEILEFLQEYKLDKVGVFKYSREEDTPASKMDGQIDEAI 355 Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVL- 440 K ER L+ Q+K+ N V + ++LIE++ E KG+ +P + V Sbjct: 356 KKEREEKLMLSQEKISN---DINKLKVNKKYDILIEEYDGEFYKGRNFEMAPDIDGNVFF 412 Query: 441 -NSKNHNIGDIIKVRI 455 + KN IG+ +KV+I Sbjct: 413 ESPKNLEIGEFVKVKI 428 >gi|85858115|ref|YP_460317.1| tRNA 2-methylthioadenine synthetase -like protein [Syntrophus aciditrophicus SB] gi|123725210|sp|Q2LQ68|RIMO_SYNAS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|85721206|gb|ABC76149.1| tRNA 2-methylthioadenine synthetase -like protein [Syntrophus aciditrophicus SB] Length = 453 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 125/399 (31%), Positives = 196/399 (49%), Gaps = 22/399 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + S GC N+ DS M + G V+ ++AD+++LNTC A E+ + R+ Sbjct: 8 IVSLGCPKNLIDSEVMAALLEQAGCRIVSGPEEADILLLNTCAFILPAREESIDEIFRLA 67 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----PQTYYRLPELLERAR 144 K K G ++V GC+ Q G E+ P V++ +G P L L+E Sbjct: 68 EWK----KAGKCRHLIVTGCLPQRYGAELAAELPEVDLFLGISEVPNIADHLRVLMEGKH 123 Query: 145 FGK-RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 K RV+ T+ L ++D G+ R +A+L I EGC C++C++P RG Sbjct: 124 SEKNRVIVTN--------PLFLMDAGHPRLLSTPPYSAYLKIAEGCSNRCSYCIIPRLRG 175 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR + ++ EA L+D GV E+ L+ Q+ A+ G+ L+G K T + LL L+ + L Sbjct: 176 KARSRPIEDILREAEDLVDRGVRELILVAQDTTAY-GRDLEG-KPTLALLLRELAGLNTL 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++P ++D L+ + D + YL +P+Q D IL +M RR ++ R ++ Sbjct: 234 AWIRILYTYPTGLTDELLNVIANQDRICSYLDVPIQHIDDDILAAMKRRGDSHLIRNSLE 293 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R R+V PD+A+ + I GFPGET F + V + + F YSP GTP + Sbjct: 294 RARAVIPDLALRTSLITGFPGETPAKFHRLIAFVQETRFDHLGVFPYSPEEGTPAEKLPR 353 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 QV + K R L ++ N VG + EVLIE Sbjct: 354 QVSQRTKETRRNLLMEEQAVISHEINQTLVGSLQEVLIE 392 >gi|17989048|ref|NP_541681.1| ribosomal protein S12 methylthiotransferase [Brucella melitensis bv. 1 str. 16M] gi|23500310|ref|NP_699750.1| ribosomal protein S12 methylthiotransferase [Brucella suis 1330] gi|62317576|ref|YP_223429.1| ribosomal protein S12 methylthiotransferase [Brucella abortus bv. 1 str. 9-941] gi|83269558|ref|YP_418849.1| ribosomal protein S12 methylthiotransferase [Brucella melitensis biovar Abortus 2308] gi|161620628|ref|YP_001594514.1| MiaB-like tRNA modifying enzyme YliG [Brucella canis ATCC 23365] gi|163844718|ref|YP_001622373.1| MiaB-like tRNA modifying enzyme YliG [Brucella suis ATCC 23445] gi|189022831|ref|YP_001932572.1| elongator protein 3 [Brucella abortus S19] gi|225629061|ref|ZP_03787094.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti str. Cudo] gi|225686353|ref|YP_002734325.1| ribosomal protein S12 methylthiotransferase [Brucella melitensis ATCC 23457] gi|237817125|ref|ZP_04596117.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus str. 2308 A] gi|254691075|ref|ZP_05154329.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 6 str. 870] gi|254695619|ref|ZP_05157447.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 3 str. Tulya] gi|254698860|ref|ZP_05160688.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 2 str. 86/8/59] gi|254699805|ref|ZP_05161633.1| MiaB-like tRNA modifying enzyme YliG [Brucella suis bv. 5 str. 513] gi|254702941|ref|ZP_05164769.1| MiaB-like tRNA modifying enzyme YliG [Brucella suis bv. 3 str. 686] gi|254705940|ref|ZP_05167768.1| MiaB-like tRNA modifying enzyme YliG [Brucella pinnipedialis M163/99/10] gi|254711165|ref|ZP_05172976.1| MiaB-like tRNA modifying enzyme YliG [Brucella pinnipedialis B2/94] gi|254732307|ref|ZP_05190885.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 4 str. 292] gi|256015342|ref|YP_003105351.1| MiaB-like tRNA modifying enzyme YliG [Brucella microti CCM 4915] gi|256029546|ref|ZP_05443160.1| MiaB-like tRNA modifying enzyme YliG [Brucella pinnipedialis M292/94/1] gi|256043459|ref|ZP_05446388.1| MiaB-like tRNA modifying enzyme YliG [Brucella melitensis bv. 1 str. Rev.1] gi|256256260|ref|ZP_05461796.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 9 str. C68] gi|256262509|ref|ZP_05465041.1| elongator protein 3 [Brucella melitensis bv. 2 str. 63/9] gi|260167364|ref|ZP_05754175.1| MiaB-like tRNA modifying enzyme YliG [Brucella sp. F5/99] gi|260544814|ref|ZP_05820635.1| elongator protein 3 [Brucella abortus NCTC 8038] gi|260564657|ref|ZP_05835142.1| elongator protein 3 [Brucella melitensis bv. 1 str. 16M] gi|260568147|ref|ZP_05838616.1| elongator protein 3 [Brucella suis bv. 4 str. 40] gi|260756671|ref|ZP_05869019.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260760102|ref|ZP_05872450.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260763340|ref|ZP_05875672.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260882488|ref|ZP_05894102.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261216018|ref|ZP_05930299.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261313369|ref|ZP_05952566.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261318757|ref|ZP_05957954.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261750275|ref|ZP_05993984.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261753547|ref|ZP_05997256.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|261756772|ref|ZP_06000481.1| elongator protein 3 [Brucella sp. F5/99] gi|265986555|ref|ZP_06099112.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265989879|ref|ZP_06102436.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|297249616|ref|ZP_06933317.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 5 str. B3196] gi|75495559|sp|Q577W6|RIMO_BRUAB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|81751333|sp|Q8FW94|RIMO_BRUSU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|81850351|sp|Q8YC29|RIMO_BRUME RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|123754492|sp|Q2YKI5|RIMO_BRUA2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065297|sp|B2SB89|RIMO_BRUA1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065298|sp|A9MBK6|RIMO_BRUC2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065300|sp|A9WYN5|RIMO_BRUSI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|17984890|gb|AAL53945.1| fe-s oxidoreductase [Brucella melitensis bv. 1 str. 16M] gi|23463922|gb|AAN33755.1| conserved hypothetical protein TIGR01125 [Brucella suis 1330] gi|62197769|gb|AAX76068.1| conserved hypothetical protein TIGR01125 [Brucella abortus bv. 1 str. 9-941] gi|82939832|emb|CAJ12840.1| Protein of unknown function UPF0004:Conserved hypothetical protein 1125:Elongator protein 3/MiaB/NifB:Radical SAM [Brucella melitensis biovar Abortus 2308] gi|161337439|gb|ABX63743.1| MiaB-like tRNA modifying enzyme YliG [Brucella canis ATCC 23365] gi|163675441|gb|ABY39551.1| MiaB-like tRNA modifying enzyme YliG [Brucella suis ATCC 23445] gi|189021405|gb|ACD74126.1| elongator protein 3 [Brucella abortus S19] gi|225615557|gb|EEH12606.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti str. Cudo] gi|225642458|gb|ACO02371.1| MiaB-like tRNA modifying enzyme YliG [Brucella melitensis ATCC 23457] gi|237787938|gb|EEP62154.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus str. 2308 A] gi|255998002|gb|ACU49689.1| MiaB-like tRNA modifying enzyme YliG [Brucella microti CCM 4915] gi|260098085|gb|EEW81959.1| elongator protein 3 [Brucella abortus NCTC 8038] gi|260152300|gb|EEW87393.1| elongator protein 3 [Brucella melitensis bv. 1 str. 16M] gi|260154812|gb|EEW89893.1| elongator protein 3 [Brucella suis bv. 4 str. 40] gi|260670420|gb|EEX57360.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260673761|gb|EEX60582.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260676779|gb|EEX63600.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260872016|gb|EEX79085.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260917625|gb|EEX84486.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261297980|gb|EEY01477.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261302395|gb|EEY05892.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261736756|gb|EEY24752.1| elongator protein 3 [Brucella sp. F5/99] gi|261740028|gb|EEY27954.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261743300|gb|EEY31226.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|263000548|gb|EEZ13238.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|263092245|gb|EEZ16542.1| elongator protein 3 [Brucella melitensis bv. 2 str. 63/9] gi|264658752|gb|EEZ29013.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|297173485|gb|EFH32849.1| MiaB-like tRNA modifying enzyme YliG [Brucella abortus bv. 5 str. B3196] gi|326410721|gb|ADZ67785.1| elongator protein 3 [Brucella melitensis M28] gi|326554014|gb|ADZ88653.1| elongator protein 3 [Brucella melitensis M5-90] Length = 437 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 151/464 (32%), Positives = 225/464 (48%), Gaps = 47/464 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ S+GYE D ADL+++NTC + A ++ Sbjct: 3 APRVSFV-SLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLE 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N E G V+V GC+ AE + I R P V + GPQ Y E + Sbjct: 62 AIGLALN-------ENGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAY----ESVMN 107 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A V + D F L G R A+L I EGC C+FC++P RG Sbjct: 108 A-----VHEVAPPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDL 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251 +SR +++V+ EA KL+ GV EI ++ Q+ +A+ GLD + + F DL Sbjct: 162 VSRPINEVLREAEKLVQAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDLS 218 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L E+ VR+ Y +P + A G + +PYL +P Q S +LK+M R Sbjct: 219 RELGEMGVWVRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPAVLKNMRRPAH 275 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + + I R PD+A+ S FIVG+PGET++DF+ +D +D+ +A FKY Sbjct: 276 QEKTSRRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKYEAVK 335 Query: 372 GTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKL 428 G +++ LEQV E VK R K +QQ+S N VG+ + V+I++ GK Sbjct: 336 GAKANDLGLEQVPEEVKEARWHRFMAK--QQQISTNLLKKKVGKRLPVIIDEANGTIGKG 393 Query: 429 VGR--SPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 R +P + SV ++S+ +GDI+ V+I L+G V Sbjct: 394 RTRYDAPEIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 437 >gi|259417985|ref|ZP_05741904.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] gi|259346891|gb|EEW58705.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] Length = 419 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 128/442 (28%), Positives = 210/442 (47%), Gaps = 38/442 (8%) Query: 30 KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 + +GC++N Y++ M + G E + +V+NTC + +A K + ++R Sbjct: 6 RPFGCRLNAYETEAMNPLSRQAGLE--------NAVVVNTCAVTAEAVRKARQEIRKLR- 56 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL---PELLE 141 ++ D ++V GC AQ E E S + V+ + P+T+ R+ P+ + Sbjct: 57 ------RDNPDAPIIVTGCAAQTEPETFAAMSEVTQVIGNTEKMQPETWQRMAKGPDFIG 110 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 K +VD SV + L +DG R R A++ +Q GCD CTFC++PY RG Sbjct: 111 TTE--KVLVDDIMSVTETASHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGN 163 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S VVD+ ++L+D G E+ L G ++ +W G L ++ L + L Sbjct: 164 SRSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPATPKLGDLVMRILKLVPDLP 222 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ ++ + L++A LMP+LHL +Q G D ILK M RRH + + + Sbjct: 223 RLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFAED 282 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R +RP++ +D I GFP ET+ F ++ LV + F YS R GTP + + Q Sbjct: 283 ARKLRPEMTFGADIIAGFPTETEAHFENSLKLVTECDLTWLHVFPYSKREGTPAAKIPSQ 342 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V+ NV +R L+ K Q +G+ VL+E +GR+ V Sbjct: 343 VNGNVIKDRAARLRAKGDAQVAKHLSQQLGRQHNVLMENPN------MGRTEQFTEVSFA 396 Query: 442 SKNHNIGDIIKVRITDVKISTL 463 + G +I+ RIT ++ + L Sbjct: 397 TPQIE-GALIQTRITGIQGTQL 417 >gi|226326854|ref|ZP_03802372.1| hypothetical protein PROPEN_00714 [Proteus penneri ATCC 35198] gi|225204691|gb|EEG87045.1| hypothetical protein PROPEN_00714 [Proteus penneri ATCC 35198] Length = 442 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 134/465 (28%), Positives = 234/465 (50%), Gaps = 49/465 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP+ FV S GC N+ DS R+ ++GY+ V + +DADL+++NTC + A ++ Sbjct: 7 VPKIGFV-SLGCPKNLVDSERILTELRTEGYQVVPTYNDADLVIVNTCGFIDSAVQESLE 65 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + E G V+V GC+ E + I P V + GP +Y ++ Sbjct: 66 AIGE-------ALDENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEQV-----L 110 Query: 143 ARFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + V D++ LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 111 SHIHHYVPKPDHN-----PFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 SR + +V+ EA++L++ GV E+ ++ Q+ +A W G + K + L Sbjct: 166 LDSRPIGEVLGEAKRLVNAGVKELLVISQDTSAYGVDTKHQTGFWDGMPV---KTSMVSL 222 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L+++ VRL Y +P + A G + +PYL +P+Q S +ILK M R Sbjct: 223 CEQLAKLGIWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPKILKLMKRPG 279 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + + + R R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP Sbjct: 280 SVERTLERVKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLTEARLDRVGCFKYSPV 339 Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425 G + + +QV E VK E R + LQ+++ +++ +G+++ V+I++ +E Sbjct: 340 DGAKANELADQVPEEVKEERYHRFMQLQQQISTERLQEK---IGKVLLVMIDEVDEEGAI 396 Query: 426 GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 G+ + +P + V ++ ++ G I++V I L+G +V Sbjct: 397 GRSMADAPEIDGAVYLNEQFDVEPGQIVRVLIEHADEYDLWGTIV 441 >gi|237742211|ref|ZP_04572692.1| Fe-S oxidoreductase [Fusobacterium sp. 4_1_13] gi|229429859|gb|EEO40071.1| Fe-S oxidoreductase [Fusobacterium sp. 4_1_13] Length = 435 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 131/449 (29%), Positives = 225/449 (50%), Gaps = 40/449 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ +++ +GYE V D +D+ ++N+C + A K + L R + + Sbjct: 11 TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138 D V+V GC AQ EIL +S IVN V + Sbjct: 71 -------NPDAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ER + G + +Y E +F L + A++ IQ+GC+ FC++C +P+ Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG SR ++ E KL+++G E+ L+G +++A+ GK EK F LL + +IK Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GKDF-KEKDNFESLLEEILKIK 226 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L R+R + +P ++D I+ + + LMP+LH+ +QS D +LK+M R + + R+ Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSSLIRES 285 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + +++S ++ ++D IVGFP E + F+ T D++ +I ++ F+YS R GT SNM Sbjct: 286 LLKLKSKVENMEFTADVIVGFPKEDEIMFQNTHDVIKEIEFSGLHIFQYSDREGTIASNM 345 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 +VD K +R L +E ++ + + +EVL+E+ + G+ G S V Sbjct: 346 DGKVDAKTKKQRADRLDSLKQEMILNSRKKYLEKSLEVLVEEE--KDGEYFGYSQNYLRV 403 Query: 439 VLNSKNHN-IGDIIKVRITDVKISTLYGE 466 S N + +I V+I VK L E Sbjct: 404 KFRSDKKNLVNKLINVKIKCVKNDILIAE 432 >gi|229521686|ref|ZP_04411104.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae TM 11079-80] gi|229341280|gb|EEO06284.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae TM 11079-80] Length = 470 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 132/456 (28%), Positives = 225/456 (49%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GYE VNS D+D++++NTC + A ++ +G Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI + P V + GP Y + E + + Sbjct: 96 ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F L + D G A+L I EGC+ CTFC++P RG +SR + ++ Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259 + EA +L + GV E+ ++ Q+ +A+ G+D + + L L ++ Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S R+LK M R A + I Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D + + + FKYSP G + + Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 EQ+ E+VK ER + +Q+++ ++ +G ++VL+++ +E G+ +P Sbjct: 374 EQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLVDEVDEEGAIGRTYADAPE 430 Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + +V LN + N G+++ V I L+G ++ Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466 >gi|159045769|ref|YP_001534563.1| MiaB-like tRNA modifying enzyme [Dinoroseobacter shibae DFL 12] gi|157913529|gb|ABV94962.1| MiaB-like tRNA modifying enzyme [Dinoroseobacter shibae DFL 12] Length = 416 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 139/439 (31%), Positives = 215/439 (48%), Gaps = 48/439 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S M +M + G +D +V+NTC + +A K + R+R Sbjct: 8 TLGCRLNAYESEAMREMAEAAGL--------SDALVVNTCAVTAEAVRKSRQEIRRLR-- 57 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLERA 143 ++ D ++V GC AQ E E P V V+G P+T+ L P+L+ R Sbjct: 58 -----RDNPDAPIIVTGCAAQTE-PETFAAMPEVTRVLGNTEKMQPETWAALVPDLIGRT 111 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +RV VD SV + L +DG + R R A++ +Q GCD CTFC++PY RG Sbjct: 112 ---ERVQVDDIMSVRETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPYGRGNS 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S VVD+ ++L+D G E+ L G ++ +W G L G ++ L + L R Sbjct: 163 RSVPAGVVVDQIKRLVDRGFNEVVLTGVDLTSW-GADLPGTPRLGDLVMRILRLVPDLPR 221 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ + + L++A LMP+LHL +Q+G D ILK M RRH + + Sbjct: 222 LRISSIDSIEADENLMRAIATEPRLMPHLHLSLQAGDDLILKRMKRRHLRDDAIAFCEEA 281 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RP++ +D I GFP ET+ F ++ LV F YSPR GTP + M Sbjct: 282 RRLRPEMTFGADIIAGFPTETEAMFENSLRLVTDCDLTWLHVFPYSPRKGTPAARMPAVP 341 Query: 383 DENVK--AERLLCLQKKLREQQVSFNDAC-VGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 +K A RL + L QV+ + A G+ ++LIE +GR+ V Sbjct: 342 GAAIKDRAARL----RALGATQVARHLAAQQGRTHKILIES------PRLGRTEQFTEVA 391 Query: 440 LNSKNHNIGDIIKVRITDV 458 +++H G I++ RIT + Sbjct: 392 F-AEDHPEGQIVEARITGI 409 >gi|153214874|ref|ZP_01949672.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|229513543|ref|ZP_04403007.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae TMA 21] gi|124115033|gb|EAY33853.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|229349420|gb|EEO14376.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae TMA 21] Length = 470 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 133/456 (29%), Positives = 224/456 (49%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GYE VNS D+D++++NTC + A ++ +G Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI + P V + GP Y + E + + Sbjct: 96 ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F L + D G A+L I EGC+ CTFC++P RG +SR + ++ Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259 + EA +L + GV E+ ++ Q+ +A+ G+D + + L L ++ Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S R+LK M R A + I Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D + + + FKYSP G + + Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 EQ+ E VK ER + +Q+++ ++ +G ++VLI++ +E G+ +P Sbjct: 374 EQIPEEVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430 Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + +V LN + N G+++ V I L+G ++ Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466 >gi|269792240|ref|YP_003317144.1| RNA modification enzyme, MiaB family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099875|gb|ACZ18862.1| RNA modification enzyme, MiaB family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 439 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 124/398 (31%), Positives = 205/398 (51%), Gaps = 20/398 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P RF V S+GC++N Y+ ++ ++AD +VL +C + +A K Sbjct: 4 PFRFKVISHGCRVNQYEG-DALAAELEAAGGIPSAPEEADCLVLVSCAVTAEAERKTRQE 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L R++ + G LLVV V + +++ S V+V V +P L+ER Sbjct: 63 LRRLKR------RSPGALLVVCGCWVNRVSDQDL--ESMGVDVAVSNGLKGTIPGLVERH 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G V S ++ LS+ R AF+ +Q+GC + CT+C+VP RG I Sbjct: 115 LHGFPVGGVYRSSAAGWDPLSL----RRTTRHTRAFVKVQDGCSRGCTYCIVPKLRGPSI 170 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +V+ E R L+++G E+ L G ++ +R GLD +DL+ +LS ++GL R+ Sbjct: 171 SRPFQEVLSEVRSLVESGALEVVLTGVHLGDYRWDGLD-----LADLVRALSSVEGLGRI 225 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ + P +S L++A G MP+LH+P+QSG D++L+ M R + +Y +++ R R Sbjct: 226 RFGSIEPFGLSQRLLEALGGSRSFMPHLHVPLQSGDDQVLRRMGRGYGGSDYVEMVRRAR 285 Query: 324 SV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 V D+ +S+D +VGFPGE F T+ ++++ + F YSPR GT + Sbjct: 286 QVLGDDLHVSADVMVGFPGEDQVAFDNTLRVLEEARVGRLHVFPYSPRPGTAAYHWPRPQ 345 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 D+ V+ ER+ L + R F VG+ + VL+E+ Sbjct: 346 DDTVR-ERVQRLLEFGRRSLGDFARGFVGREVRVLVER 382 >gi|326574032|gb|EGE23981.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis CO72] Length = 458 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 132/429 (30%), Positives = 212/429 (49%), Gaps = 43/429 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ N D ADL+V+NTC E A ++ Sbjct: 10 PKIGFV-SLGCPKALVDSERIITELTYEGYQVANDYDGADLVVVNTCGFIESAVQESLDA 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N KN + V+V GC+ + + E+I P V V G Y + + Sbjct: 69 IGEAIN-KNGK--------VIVTGCLGK-DAEKIRTMHPAVLAVTGAHAYEEVISAVNH- 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K + +Y + K + ++ D G A++ I EGC+ CTFC++P RG + Sbjct: 118 HVPKPIKSKEY--DPKIDLIN--DAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDLV 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V+ EA L +GV E+ ++ Q+ +A W G L K F D+ Sbjct: 174 SRPIDSVMKEAVALKKSGVKELLVISQDTSAYGVDLKYKTVFWEGWPL---KSKFYDMCE 230 Query: 253 SLSEIKGLVRLRYTTSHP------RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 ++S++ VRL Y +P + M+D + + G + L+PYL +P Q S +LK+M Sbjct: 231 AMSKLGIWVRLHYVYPYPHVDAVVQIMADSMTASAG-MGGLLPYLDIPFQHASPNVLKAM 289 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + + I R++ PDI I S F+VGFPGETD+DF +D + K + F Sbjct: 290 KRPAMSENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCFT 349 Query: 367 YSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 YS G +++ V E+VK ERL+ LQ+K+ ++++ VG+ + VL+++ Sbjct: 350 YSEIEGAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEK---VGKTLVVLVDEIDT 406 Query: 424 EKGKLVGRS 432 E+ + RS Sbjct: 407 EENIAICRS 415 >gi|139439619|ref|ZP_01773032.1| Hypothetical protein COLAER_02059 [Collinsella aerofaciens ATCC 25986] gi|133774960|gb|EBA38780.1| Hypothetical protein COLAER_02059 [Collinsella aerofaciens ATCC 25986] Length = 449 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 136/469 (28%), Positives = 214/469 (45%), Gaps = 63/469 (13%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N D+ RM + + GYE DAD+ ++NTC A + + N Sbjct: 12 TLGCAKNEVDTDRMRSLLTAAGYEEAFDPQDADIAIVNTCSFLASATSESIETTLELANE 71 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP-ELLERARFGKRV 149 ++ +V+ GCV G++ LP EL E A F K Sbjct: 72 VQDGVRS---CPIVMCGCVPSRYGDD-------------------LPDELPEVAAFVK-- 107 Query: 150 VDTDYSVEDKFERLSIVDG--GYNRK------------RGVTAFLTIQEGCDKFCTFCVV 195 +++ ++++DG G R+ G A++ I +GC++FC+FC++ Sbjct: 108 ------ADEEDGIVAVIDGVLGVEREIAAYIPQVKRTVEGAVAYVKISDGCNRFCSFCMI 161 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL------DGEKCTFSD 249 PY RG SR+ ++ E R L+ GV EI L+GQ+ W G DG + Sbjct: 162 PYIRGRYHSRNSESIISEVRDLVAGGVREIVLIGQDTGIW-GTDFADEDVADGSPRNLAQ 220 Query: 250 LLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 LL +++E V +R P M+D LI D ++PY+ +PVQ RILK+M Sbjct: 221 LLRAVAEAVRPHNVWVRVLYLQPEGMTDELIDTIRDTPEVLPYIDIPVQHCDARILKAMR 280 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + E + +R P I I S +VGFP ETDD+FR +D +D +G+ F Y Sbjct: 281 RSGSRQELEDLFRDLRERIPGIVIRSTAMVGFPTETDDEFRDLIDFMDTVGFDYTSVFAY 340 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEK 425 S G+ + M QVDE VK ER + A VG+ +V+++ + ++ Sbjct: 341 SREEGSLAAKMEGQVDEEVKLERAQEAMDLAESLGFAATAAHVGERAQVIVDGIEETEDG 400 Query: 426 GKLVGRSPWLQ------SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +L+G + W Q +V L++ ++GDI+ V TD L G +V Sbjct: 401 AELIGHA-WFQAPDSDGAVHLDASEASVGDILTVEFTDSFCYELIGHVV 448 >gi|326561181|gb|EGE11546.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis 7169] gi|326567931|gb|EGE18028.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis BC1] Length = 458 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 132/429 (30%), Positives = 212/429 (49%), Gaps = 43/429 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ N D ADL+V+NTC E A ++ Sbjct: 10 PKIGFV-SLGCPKALVDSERIITELTYEGYQVANDYDGADLVVVNTCGFIESAVQESLDA 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N KN + V+V GC+ + + E+I P V V G Y + + Sbjct: 69 IGEAIN-KNGK--------VIVTGCLGK-DAEKIRTMHPAVLAVTGAHAYEEVISAVNH- 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K + +Y + K + ++ D G A++ I EGC+ CTFC++P RG + Sbjct: 118 HVPKPIKSKEY--DPKIDLIN--DAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDLV 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V+ EA L +GV E+ ++ Q+ +A W G L K F D+ Sbjct: 174 SRPIDSVMKEAVALKKSGVKELLVISQDTSAYGVDLKYKTVFWEGWPL---KSKFYDMCE 230 Query: 253 SLSEIKGLVRLRYTTSHP------RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 ++S++ VRL Y +P + M+D + + G + L+PYL +P Q S +LK+M Sbjct: 231 AMSKLGIWVRLHYVYPYPHVDAVVQIMADSMTASAG-MGGLLPYLDIPFQHASPNVLKAM 289 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + + I R++ PDI I S F+VGFPGETD+DF +D + K + F Sbjct: 290 KRPAMSENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCFT 349 Query: 367 YSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 YS G +++ V E+VK ERL+ LQ+K+ ++++ VG+ + VL+++ Sbjct: 350 YSEIEGAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEK---VGKTLVVLVDEIDT 406 Query: 424 EKGKLVGRS 432 E+ + RS Sbjct: 407 EENIAICRS 415 >gi|294637044|ref|ZP_06715359.1| RNA modification enzyme, MiaB-family [Edwardsiella tarda ATCC 23685] gi|291089741|gb|EFE22302.1| RNA modification enzyme, MiaB-family [Edwardsiella tarda ATCC 23685] Length = 446 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 140/468 (29%), Positives = 229/468 (48%), Gaps = 47/468 (10%) Query: 19 DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78 +Q P+ F+ S GC N+ DS R+ ++GY V + +DADL+++NTC + A + Sbjct: 8 NQSRQPKIGFI-SLGCPKNLVDSERILTELRTEGYLVVPTYEDADLVIVNTCGFIDSAVQ 66 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 + +G N E G V+V GC+ E + I P V + GP +Y ++ Sbjct: 67 ESLEAIGEALN-------ENGK--VIVTGCLGAKENQ-IREVHPKVLEISGPHSYEQV-- 114 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 K V + + F L + + G A+L I EGC+ C FC++P Sbjct: 115 ---LHHVHKYVAKPQH---NPFTSL-VPEQGVKLTPKHFAYLKISEGCNHRCAFCIIPSL 167 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG SR + V+DEA++L D+GV E+ ++ Q+ +A W G+ + K + Sbjct: 168 RGDLESRPIGAVLDEAKRLADSGVKELLVISQDTSAYGADIQQRTGFWNGQPV---KTSM 224 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 L L+ + VRL Y +P + A G L +PYL +P+Q S RILK M Sbjct: 225 LSLCEQLATLGVWVRLHYVYPYPHVDDVIPLMAAGKL---LPYLDIPLQHASPRILKLMK 281 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + I R R + P + + S FIVGFPGET++DF+ +D + + + F+Y Sbjct: 282 RPGAVERTLERIKRWREICPQLTLRSTFIVGFPGETEEDFQMLLDFLREARLDRVGCFQY 341 Query: 368 SPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 SP G + + +QV + VK +R + LQ+++ +++ VG + V+I++ +E Sbjct: 342 SPVEGAAANALPDQVADEVKQARYDRFMQLQQQISAERLQEK---VGLTLPVIIDEVDEE 398 Query: 425 K--GKLVGRSPWLQSVV-LN-SKNHNIGDIIKVRITDVKISTLYGELV 468 G+ + +P + VV LN +N GDI+ V I +V ++G L Sbjct: 399 GAIGRSMADAPEIDGVVYLNGERNVKAGDIVNVTIENVDEYDMWGSLA 446 >gi|317132114|ref|YP_004091428.1| MiaB-like tRNA modifying enzyme [Ethanoligenens harbinense YUAN-3] gi|315470093|gb|ADU26697.1| MiaB-like tRNA modifying enzyme [Ethanoligenens harbinense YUAN-3] Length = 427 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 129/440 (29%), Positives = 218/440 (49%), Gaps = 22/440 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ ME G+E V D AD+ ++N+C + ++ K L R++ Sbjct: 7 TLGCKVNQYETQIMEQSLRDAGFEIVPPEDPADVFIVNSCTVTAESDRKTRQMLRRMK-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-LERARFGKRV 149 K + V+ GC QA E+ + +++ G + + +L L+ R +R+ Sbjct: 65 -----KRNPAAIAVLCGCYVQAAPEKAAAIA-EADIIAGVRDRGDIAKLILQSMREKERL 118 Query: 150 VDT-DYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + + FE + G+ R AF+ I++GC FCT+C++P++RG S+ Sbjct: 119 THVPSFEQGELFEPMQARGLEGHTR-----AFVKIEDGCRNFCTYCIIPFSRGPVRSKPP 173 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++ E L + G E L+G N++A+ G D + T +D + + + GL R+R + Sbjct: 174 EEITAELATLREQGYAEAVLVGINLSAY---GSDLGR-TLADAVDAAGRV-GLARIRLGS 228 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D I L P+ HL +QSG L MNRR+T + + R+RS P Sbjct: 229 LSPLAVTDEFITRAARCPSLCPHFHLSLQSGCVDTLARMNRRYTPDAFADTVHRLRSAFP 288 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D +I++D I GFPGET+++F T+D V +IG++QA F YS R GT + M QV +N++ Sbjct: 289 DCSITTDIIAGFPGETEEEFAQTLDFVKQIGFSQAHVFPYSRRDGTRAAAMDGQVPKNIR 348 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447 R L Q +F VG+ + VL E+ E G G +P V + + Sbjct: 349 ERRAHALISLCTRTQQAFRQRFVGRRVPVLFEQRA-ENGLWEGLTPQYVPVFVQADEDLH 407 Query: 448 GDIIKVRITDVKISTLYGEL 467 G I V + +++ + G L Sbjct: 408 GAIRNVYMEEIQAAGCLGRL 427 >gi|146302766|ref|YP_001197357.1| MiaB-like tRNA modifying enzyme [Flavobacterium johnsoniae UW101] gi|146157184|gb|ABQ08038.1| MiaB-like tRNA modifying enzyme [Flavobacterium johnsoniae UW101] Length = 444 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 126/422 (29%), Positives = 208/422 (49%), Gaps = 39/422 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F +G++RV+ + AD+ V+NTC + E A ++ + + L Sbjct: 11 TLGCKLNFSETSTIARNFNDEGFDRVDFEEVADIYVINTCSVTENADKQFKQVVKKAMKL 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---LERARFGK 147 V GC AQ + EE L V++V+G +++ + L + G+ Sbjct: 71 NEK-------AFVAAVGCYAQLKPEE-LAAVDGVDLVLGATEKFKITDYIHDLSKNDMGE 122 Query: 148 ----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + D+ V G Y+ AFL +Q+GCD CT+C +P RGI Sbjct: 123 VHSCEIAEADFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 171 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260 S +L V+ A+++ + EI L G N+ + GKG G K TF DL+ +L ++ G+ Sbjct: 172 SDALENVLKNAKEISAQNIREIVLTGVNIGDY-GKGEFGNKKHEHTFLDLVQALDKVDGI 230 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ P + + I +P+ H+P+QSGS+ ILK M RR+ Y ++ Sbjct: 231 ERLRISSIEPNLLKNETIDFVSKSRTFVPHFHIPLQSGSNDILKLMKRRYLREVYIDRVN 290 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +IR V P I D IVGFPGETD+ F T ++++ + F YS R T +M Sbjct: 291 KIREVMPHACIGVDVIVGFPGETDEHFLETYHFLNELDISYLHVFTYSERDNTEAVDMPG 350 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RS 432 V NV+A+R L+ +++ +F ++ +G VL E KE G + G ++ Sbjct: 351 VVPSNVRAKRSKMLRGLSVKKRRAFYESQLGTNRTVLFESENKE-GYIHGFTENYVKVKT 409 Query: 433 PW 434 PW Sbjct: 410 PW 411 >gi|326563981|gb|EGE14230.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis 103P14B1] gi|326567631|gb|EGE17739.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis 12P80B1] gi|326569488|gb|EGE19548.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis BC8] gi|326577001|gb|EGE26896.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis 101P30B1] gi|326577473|gb|EGE27357.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis O35E] Length = 458 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 132/429 (30%), Positives = 212/429 (49%), Gaps = 43/429 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ N D ADL+V+NTC E A ++ Sbjct: 10 PKIGFV-SLGCPKALVDSERIITELTYEGYQVANDYDGADLVVVNTCGFIESAVQESLDA 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N KN + V+V GC+ + + E+I P V V G Y + + Sbjct: 69 IGEAIN-KNGK--------VIVTGCLGK-DAEKIRTMHPAVLAVTGAHAYEEVISAVNH- 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K + +Y + K + ++ D G A++ I EGC+ CTFC++P RG + Sbjct: 118 HVPKPIKSKEY--DPKIDLIN--DAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDLV 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V+ EA L +GV E+ ++ Q+ +A W G L K F D+ Sbjct: 174 SRPIDSVMKEAVALKKSGVKELLVISQDTSAYGVDLKYKTVFWEGWPL---KSKFYDMCE 230 Query: 253 SLSEIKGLVRLRYTTSHP------RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 ++S++ VRL Y +P + M+D + + G + L+PYL +P Q S +LK+M Sbjct: 231 AMSKLGIWVRLHYVYPYPHVDAVVQIMADSMTASAG-MGGLLPYLDIPFQHASPNVLKAM 289 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + + I R++ PDI I S F+VGFPGETD+DF +D + K + F Sbjct: 290 KRPAMSENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCFT 349 Query: 367 YSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 YS G +++ V E+VK ERL+ LQ+K+ ++++ VG+ + VL+++ Sbjct: 350 YSEIEGAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEK---VGKTLVVLVDEIDT 406 Query: 424 EKGKLVGRS 432 E+ + RS Sbjct: 407 EENIAICRS 415 >gi|308809858|ref|XP_003082238.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri] gi|116060706|emb|CAL57184.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri] Length = 481 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 131/425 (30%), Positives = 198/425 (46%), Gaps = 80/425 (18%) Query: 119 RRSPIVNVVVGPQTYYRLPELLERAR-FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV- 176 R I GP LP L++ R G + ++ SVE+ + + V R+ G Sbjct: 35 RGGSIAGHRAGPGCVSDLPNLIDAVRGTGAKAMNVQLSVEETYADIIPV-----REVGTH 89 Query: 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236 +AF+TI GCD C FC+VPYTRG E SR L+ ++ E R L + G+ E+TLLGQNVN++ Sbjct: 90 SAFVTIMRGCDNACAFCIVPYTRGRERSRDLASIMYEIRSLSERGIKEVTLLGQNVNSYA 149 Query: 237 G------------------------------KGLDGEKCT-------------------- 246 G GL G + + Sbjct: 150 GDVTSATTRDFLSQLVGEDVDAVELVANASSAGLAGAQGSAFVGYADGFKSRYDPERKRE 209 Query: 247 ----FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 F++LL ++ + +R+R+T+ HP+D D +++ D + LH+P QSGS Sbjct: 210 GTIQFAELLDKVASVDPEMRIRFTSPHPKDFPDDVLRVIRDRPNVSKCLHMPAQSGSTAT 269 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L+ M R +T Y ++IDR+R + P A+++D I GF GET+ D T+ L+ +IGY QA Sbjct: 270 LERMARGYTREAYIELIDRVRMIIPGCAVTTDIISGFCGETEADHEDTVSLMTRIGYEQA 329 Query: 363 FSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 F F YS R GT + + V E+VK RL + R + +G VL+E Sbjct: 330 FMFAYSEREGTGAHRHQKDDVPEDVKQRRLQEVIDAFRAKAGEKQRMEIGSTHCVLVEGP 389 Query: 422 GKEKG-KLVGR---SPWL--------------QSVVLNSKNHNIGDIIKVRITDVKISTL 463 K+ +L G+ S W+ +S S + GD + VR+T TL Sbjct: 390 SKKNPEELTGKTDTSKWVIFDDAPTGSYAGDARSATTGSHRVSPGDYVAVRVTGCSTGTL 449 Query: 464 YGELV 468 +GEL+ Sbjct: 450 FGELL 454 >gi|256845484|ref|ZP_05550942.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_36A2] gi|256719043|gb|EEU32598.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_36A2] Length = 435 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 131/449 (29%), Positives = 225/449 (50%), Gaps = 40/449 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ +++ +GYE V D +D+ ++N+C + A K + L R + + Sbjct: 11 TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138 D V+V GC AQ EIL +S IVN V + Sbjct: 71 -------NPDAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ER + G + +Y E +F L + A++ IQ+GC+ FC++C +P+ Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG SR ++ E KL+++G E+ L+G +++A+ GK EK F LL + +IK Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GKDF-KEKDNFESLLEEILKIK 226 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L R+R + +P ++D I+ + + LMP+LH+ +QS D +LK+M R + + R+ Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSSLIRES 285 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + +++S ++ ++D IVGFP E + F+ T D++ +I ++ F+YS R GT SNM Sbjct: 286 LLKLKSKVENMEFTADVIVGFPKEDEIMFQNTHDVIKEIEFSGLHIFQYSDREGTIASNM 345 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 +VD K +R L +E ++ + + +EVL+E+ + G+ G S V Sbjct: 346 DGKVDAKTKKQRADRLDSLKQEMILNSRKKYLEKNLEVLVEEE--KDGEYFGYSQNYLRV 403 Query: 439 VLNSKNHN-IGDIIKVRITDVKISTLYGE 466 S N + +I V+I VK L E Sbjct: 404 KFRSDEKNLVNKLINVKIKCVKNDILIAE 432 >gi|153830055|ref|ZP_01982722.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|254226795|ref|ZP_04920368.1| conserved hypothetical protein [Vibrio cholerae V51] gi|262190834|ref|ZP_06049056.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae CT 5369-93] gi|125620688|gb|EAZ49049.1| conserved hypothetical protein [Vibrio cholerae V51] gi|148874454|gb|EDL72589.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|262033283|gb|EEY51799.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae CT 5369-93] Length = 470 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 133/456 (29%), Positives = 225/456 (49%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GYE VNS D+D++++NTC + A ++ +G Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI + P V + GP Y + E + + Sbjct: 96 ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F L + D G A+L I EGC+ CTFC++P RG +SR + ++ Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259 + EA +L + GV E+ ++ Q+ +A+ G+D + + L L ++ Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S RILK M R A + I Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRILKMMKRPGQAERTLERI 313 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D + + + FKYSP G + + Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 +Q+ E+VK ER + +Q+++ ++ +G ++VLI++ +E G+ +P Sbjct: 374 DQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430 Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + +V LN + N G+++ V I L+G ++ Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466 >gi|153010948|ref|YP_001372162.1| MiaB-like tRNA modifying enzyme YliG [Ochrobactrum anthropi ATCC 49188] gi|238066603|sp|A6X529|RIMO_OCHA4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|151562836|gb|ABS16333.1| MiaB-like tRNA modifying enzyme YliG [Ochrobactrum anthropi ATCC 49188] Length = 437 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 147/461 (31%), Positives = 220/461 (47%), Gaps = 47/461 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ S+GYE D ADL+++NTC + A ++ Sbjct: 3 APRVSFV-SLGCPKALVDSERIITSLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLD 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N E G V+V GC+ AE + I R P V + GPQ Y + + Sbjct: 62 AIGLALN-------ENGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAYESVMSAVHE 111 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D F L G R A+L I EGC C+FC++P RG Sbjct: 112 AV---------PPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDL 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251 +SR + V+ EA KL++ GV EI ++ Q+ +A+ GLD + + F DL Sbjct: 162 VSRPIDSVLREAEKLVNAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDLS 218 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L ++ VR+ Y +P + A G + +PYL +P Q S +LK+M R Sbjct: 219 RELGDMGVWVRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPAVLKNMRRPAH 275 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + + I R PD+A+ S FIVG+PGET++DF +D +D+ +A FKY P Sbjct: 276 QEKTSRRIQAWRETCPDLAVRSTFIVGYPGETEEDFEILLDWLDEAKIERAGCFKYEPVK 335 Query: 372 GTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKL 428 G +++ LEQV E +K R K +QQ+S N VG+ + V+I++ GK Sbjct: 336 GAKANDLGLEQVPEEIKEARWHRFMAK--QQQISTNLLKKKVGKRLPVIIDEANGTIGKG 393 Query: 429 VGR--SPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYG 465 R +P + SV + S+ +GDI+ V+I L+G Sbjct: 394 RTRYDAPEIDGSVHIQSRRPLRVGDIVTVKIEASDAYDLHG 434 >gi|52426302|ref|YP_089439.1| MiaB protein [Mannheimia succiniciproducens MBEL55E] gi|81386470|sp|Q65QA6|RIMO_MANSM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|52308354|gb|AAU38854.1| MiaB protein [Mannheimia succiniciproducens MBEL55E] Length = 448 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 133/467 (28%), Positives = 230/467 (49%), Gaps = 53/467 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P FV S GC N+ DS R+ + GY + + ++ADL+++NTC + A ++ Sbjct: 9 APNIGFV-SLGCPKNLVDSERILTELRTDGYNIIPTYENADLVIVNTCGFIDSAVQESLE 67 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G ++E G V+V GC+ E + I P V + GP +Y + E + + Sbjct: 68 AIGEA-------LEENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAVMEHVHK 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + R Y+ + + + Y A+L I EGCD CTFC++P RG Sbjct: 118 --YVPRPERNPYTSLVPAQGVKLTPKHY-------AYLKISEGCDHKCTFCIIPSLRGDL 168 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTF 247 SR ++QV+DEA++L+D+GV E+ ++ Q+ +A W G + T Sbjct: 169 DSRPITQVLDEAKRLVDSGVKELLVVSQDTSAYALDQSKENQNKTVFWNGAPIKNNLIT- 227 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 L L + +RL Y +P + A G + +PYL +P+Q S ++LK+M Sbjct: 228 --LCRQLGTLGAWIRLHYVYPYPHVDDLIPLMAEGKI---LPYLDIPLQHASPKVLKAMK 282 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + + I + R + P++ + S FIVGFPGET++DF+ +D + + + FK+ Sbjct: 283 RPGSVERVLERIQKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLQEAQLDRVGCFKF 342 Query: 368 SPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEV--LIEKHG 422 SP G ++M +QV E VK +R + LQ+++ Q++ +G+ + V Sbjct: 343 SPVEGAVATDMADQVPEEVKEQRFQRFMELQQQISAQRLQQK---IGKTLPVIIDDIDED 399 Query: 423 KEKGKLVGRSPWLQSVV-LNSKNHN---IGDIIKVRITDVKISTLYG 465 G+ + +P + VV +++++ + IGDII+V IT+ L+G Sbjct: 400 GIIGRSMADAPEIDGVVYVDNRSESAVKIGDIIQVAITNADEYDLWG 446 >gi|325272756|ref|ZP_08139104.1| ribosomal protein S12 methylthiotransferase [Pseudomonas sp. TJI-51] gi|324102107|gb|EGB99605.1| ribosomal protein S12 methylthiotransferase [Pseudomonas sp. TJI-51] Length = 443 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 145/473 (30%), Positives = 231/473 (48%), Gaps = 65/473 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 8 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ EG I P V V GPQ Y Sbjct: 67 IGEA-------IKENGK--VIVTGCMGVEEGN-IRDVHPSVLSVTGPQQY---------- 106 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 107 ---EQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 163 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR + +V+ EA +L+ GV EI ++ Q+ +A W G+ + K Sbjct: 164 RGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPV---KTRM 220 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 +L +LS + VRL Y +P + A G ++PYL +P Q S ++LKSM Sbjct: 221 LELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKSMK 277 Query: 308 RRHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 R A+E R + I + R P++ I S FIVGFPGET++DF+ +D + + + F Sbjct: 278 R--PAFEDRTLARIKQWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCF 335 Query: 366 KYSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 +YSP G P +++ L++V +++K +R + Q+ + ++ +G+ IEVLI++ Sbjct: 336 QYSPVEGAPANDLGLDEVPDDIKQDRWDRFMAHQQAISAARLQLR---IGKEIEVLIDE- 391 Query: 422 GKEKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 E VGRS P + V +H GD ++ R+ D ++ E V Sbjct: 392 -VEAQGSVGRSFFDAPEIDGSVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPV 443 >gi|148546471|ref|YP_001266573.1| ribosomal protein S12 methylthiotransferase [Pseudomonas putida F1] gi|238066508|sp|A5VZS9|RIMO_PSEP1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238066635|sp|Q88NL0|RIMO_PSEPK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|148510529|gb|ABQ77389.1| MiaB-like tRNA modifying enzyme YliG [Pseudomonas putida F1] gi|313497550|gb|ADR58916.1| RimO [Pseudomonas putida BIRD-1] Length = 443 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 147/474 (31%), Positives = 235/474 (49%), Gaps = 67/474 (14%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 8 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ EG I P V V GPQ Y Sbjct: 67 IGEA-------IKENGK--VIVTGCMGVEEGS-IRDVHPSVLSVTGPQQY---------- 106 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 107 ---EQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 163 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR + +V+ EA +L+ GV EI ++ Q+ +A W G+ + K Sbjct: 164 RGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPV---KTRM 220 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 +L +LS + VRL Y +P + A G ++PYL +P Q S ++LKSM Sbjct: 221 LELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKSMK 277 Query: 308 RRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 R A+E R + RI++ R P++ I S FIVGFPGET++DF+ +D + + + Sbjct: 278 R--PAFEDRTLA-RIKNWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGC 334 Query: 365 FKYSPRLGTPGSNM-LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 F+YSP G P +++ L +V ++VK E R + Q+ + ++ +G+ I+VLI++ Sbjct: 335 FQYSPVEGAPANDLGLAEVPDDVKQERWDRFMAHQQAISAARLQLR---IGKEIDVLIDE 391 Query: 421 HGKEKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +E+G VGRS P + V +H GD ++ R+ D ++ E + Sbjct: 392 V-EEQGS-VGRSFFDAPEIDGSVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPI 443 >gi|163816750|ref|ZP_02208113.1| hypothetical protein COPEUT_02940 [Coprococcus eutactus ATCC 27759] gi|158448007|gb|EDP25002.1| hypothetical protein COPEUT_02940 [Coprococcus eutactus ATCC 27759] Length = 450 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 112/373 (30%), Positives = 202/373 (54%), Gaps = 27/373 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ M DM + G + V+ + AD+ ++NTC + A +K L R + Sbjct: 11 TLGCKVNQAETDSMLDMLSAAGADIVDFEEKADIYIVNTCSVTNIADKKSRQMLHRAK-- 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-----RARF 145 K + +V+ AGC Q+ +E+L + V++V+ + +++ R Sbjct: 69 -----KRNPESIVIAAGCYVQS-AKELLEQDESVDIVISNNKKKDITDIVNDYINVRKNE 122 Query: 146 G--------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 G K+ D S E ++E + GG+ A++ IQ+GC++FC++C++PY Sbjct: 123 GGDTPAGGEKKEYFIDISKETEYEEM----GGHVPVGHTRAYVKIQDGCNQFCSYCIIPY 178 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG SRS V+ E +L ++G+ E+ L G +++++ GK + E DL+ ++S+I Sbjct: 179 VRGRIRSRSEEAVIAEVTELAESGIKEVVLTGIHISSY-GKDKNNEGALI-DLIDAISKI 236 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 KG+ R+R + P +++ ++ + P+ HL +QSG + ILK MNR++T +Y + Sbjct: 237 KGIKRIRLGSLEPGIITEDFVRRVSANKKVCPHFHLSLQSGCNTILKRMNRKYTREQYFE 296 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + +R A+++D IVGFPGETD++F T+ + ++ + FKYSPR GT + Sbjct: 297 KCEMLREAYDAPALTTDVIVGFPGETDEEFEETVQYLTELNLYEMHIFKYSPRKGTVAAA 356 Query: 378 MLEQVDENVKAER 390 M +QV VK +R Sbjct: 357 MKDQVSPEVKNKR 369 >gi|251780611|ref|ZP_04823531.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084926|gb|EES50816.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 446 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 131/436 (30%), Positives = 224/436 (51%), Gaps = 28/436 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + S+ YE N+ +AD+I++NTC E A ++ + + Sbjct: 10 SLGCDKNRVDSEIILGKMSSE-YEITNNAKEADVIIVNTCGFIESAKQESIDTILEMAEY 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL----PELLERARFG 146 KN+ L++ GC+ Q G+E+ P +++++G Y ++ E +E + Sbjct: 69 KNNY----NCKLLIATGCLIQRYGDELKNLIPEIDIMLGVNDYNKIDRVITEFIEGNKEA 124 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++++ YS E+ E I+ + +A++ I EGC+ FCT+C++P RG SR Sbjct: 125 SKLLN--YSDENINEGSRIL-----TTQKESAYIRIAEGCNNFCTYCIIPKIRGKFRSRR 177 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + ++ EA L GV E+ L+ Q+ + G + G+K LL LS I+G+ +R Sbjct: 178 MENIISEATDLASKGVKELILIAQDTTQY-GSDIYGKK-NLHILLKELSNIEGIKWIRVL 235 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + D LI+ D ++ YL +P+Q SD +LK M R+ + + I+++R Sbjct: 236 YCYPEAIYDELIEEIAANDKVVKYLDIPIQHISDHVLKLMGRKTSKKDITDKIEKLRKNI 295 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P+I I + FIVGFP ET +DF ++ + + + FKYS TP S M Q+DE++ Sbjct: 296 PNIIIRTTFIVGFPQETQEDFEEILEFLQEYKLDKVGVFKYSREEDTPASKMDGQIDESI 355 Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVL- 440 K ER L+ Q+K+ + N V + ++LIE++ E KG+ +P + V Sbjct: 356 KEEREEKLMLSQEKISN---NINKLKVDKKYDILIEEYDGEFYKGRNFEMAPDIDGNVFF 412 Query: 441 -NSKNHNIGDIIKVRI 455 + K IG+ +KV+I Sbjct: 413 ESPKKLEIGEFVKVKI 428 >gi|26987932|ref|NP_743357.1| ribosomal protein S12 methylthiotransferase [Pseudomonas putida KT2440] gi|24982643|gb|AAN66821.1|AE016311_1 conserved hypothetical protein TIGR01125 [Pseudomonas putida KT2440] Length = 470 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 147/474 (31%), Positives = 235/474 (49%), Gaps = 67/474 (14%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 35 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEV 93 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ EG I P V V GPQ Y Sbjct: 94 IGEA-------IKENGK--VIVTGCMGVEEGS-IRDVHPSVLSVTGPQQY---------- 133 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 134 ---EQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 190 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR + +V+ EA +L+ GV EI ++ Q+ +A W G+ + K Sbjct: 191 RGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGRPV---KTRM 247 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 +L +LS + VRL Y +P + A G ++PYL +P Q S ++LKSM Sbjct: 248 LELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKSMK 304 Query: 308 RRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 R A+E R + RI++ R P++ I S FIVGFPGET++DF+ +D + + + Sbjct: 305 R--PAFEDRTLA-RIKNWREQCPELVIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGC 361 Query: 365 FKYSPRLGTPGSNM-LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 F+YSP G P +++ L +V ++VK E R + Q+ + ++ +G+ I+VLI++ Sbjct: 362 FQYSPVEGAPANDLGLAEVPDDVKQERWDRFMAHQQAISAARLQLR---IGKEIDVLIDE 418 Query: 421 HGKEKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +E+G VGRS P + V +H GD ++ R+ D ++ E + Sbjct: 419 V-EEQGS-VGRSFFDAPEIDGSVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPI 470 >gi|298208381|ref|YP_003716560.1| putative Fe-S oxidoreductase [Croceibacter atlanticus HTCC2559] gi|83848302|gb|EAP86172.1| putative Fe-S oxidoreductase [Croceibacter atlanticus HTCC2559] Length = 458 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 133/457 (29%), Positives = 223/457 (48%), Gaps = 48/457 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F +G+ RV + AD+ V+NTC + E A + R +++ Sbjct: 15 TLGCKLNFSETSTIARSFEHEGFNRVEFHEHADIYVINTCSVTENADK-------RFKDI 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---RARFGK 147 K D V+ GC AQ + EE L V++V+G + + L + G+ Sbjct: 68 VKKAQKINEDAFVIAIGCYAQLKPEE-LADVHGVDLVLGATEKFNITNYLNDLTKNDLGE 126 Query: 148 ----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D D+ V G Y+ AFL +Q+GCD CT+C +P RGI Sbjct: 127 VHSCEIEDADFYV-----------GSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISR 175 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGL 260 S ++ V+ A+++ + + EI L G N+ + GKG G K TF +L+ +L +++G+ Sbjct: 176 SDTMENVLQNAKEIAEQDIKEIVLTGVNIGDY-GKGEFGNKRHEHTFLELVENLDKVEGI 234 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ P + + I + D +P+ H+P+QSGS+ +LK M RR+ Y + Sbjct: 235 ERLRISSIEPNLLKNETIDFVSNSDKFVPHFHIPLQSGSNALLKLMRRRYNRELYVDRVA 294 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RI+SV P+ I D IVGFPGET++ F T + ++ + + F YS R T + M Sbjct: 295 RIKSVMPNACIGVDVIVGFPGETEELFLETYNFLNDLDISYLHVFTYSERDNTLAAEMDG 354 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RS 432 V V+ +R L+ +++ +F + + + VL E KE G + G ++ Sbjct: 355 VVPIKVRKKRSKMLRGLSAKKRRAFYETQINNSLTVLFEGENKE-GYIHGFTENYVKIKA 413 Query: 433 PW-------LQSVVLNSKNHNIGDIIKVRITDVKIST 462 PW LQ V L + + ++KV I +ST Sbjct: 414 PWNPNLVNTLQDVTLTEIDED--GLVKVAIAGEDLST 448 >gi|15642615|ref|NP_232248.1| hypothetical protein VC2620 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121588096|ref|ZP_01677844.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153819032|ref|ZP_01971699.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153821555|ref|ZP_01974222.1| conserved hypothetical protein [Vibrio cholerae B33] gi|229507328|ref|ZP_04396833.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae BX 330286] gi|229509748|ref|ZP_04399229.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae B33] gi|229516873|ref|ZP_04406319.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae RC9] gi|229606834|ref|YP_002877482.1| ribosomal protein S12 methylthiotransferase [Vibrio cholerae MJ-1236] gi|254851159|ref|ZP_05240509.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255744413|ref|ZP_05418365.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholera CIRS 101] gi|262158474|ref|ZP_06029589.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae INDRE 91/1] gi|81544361|sp|Q9KNW0|RIMO_VIBCH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|9657209|gb|AAF95761.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547639|gb|EAX57736.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|126510413|gb|EAZ73007.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126520940|gb|EAZ78163.1| conserved hypothetical protein [Vibrio cholerae B33] gi|229345936|gb|EEO10908.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae RC9] gi|229353222|gb|EEO18161.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae B33] gi|229354833|gb|EEO19754.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae BX 330286] gi|229369489|gb|ACQ59912.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae MJ-1236] gi|254846864|gb|EET25278.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255737938|gb|EET93331.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholera CIRS 101] gi|262029635|gb|EEY48284.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae INDRE 91/1] Length = 470 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 132/456 (28%), Positives = 225/456 (49%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GYE VNS D+D++++NTC + A ++ +G Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI + P V + GP Y + E + + Sbjct: 96 ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F L + D G A+L I EGC+ CTFC++P RG +SR + ++ Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259 + EA +L + GV E+ ++ Q+ +A+ G+D + + L L ++ Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S R+LK M R A + I Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D + + + FKYSP G + + Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 +Q+ E+VK ER + +Q+++ ++ +G ++VLI++ +E G+ +P Sbjct: 374 DQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430 Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + +V LN + N G+++ V I L+G ++ Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSIL 466 >gi|326572748|gb|EGE22734.1| MiaB family tRNA modifying enzyme [Moraxella catarrhalis BC7] Length = 458 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 132/429 (30%), Positives = 212/429 (49%), Gaps = 43/429 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ N D ADL+V+NTC E A ++ Sbjct: 10 PKIGFV-SLGCPKALVDSERIITELTYEGYQVANDYDGADLVVVNTCGFIESAVQESLDA 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N KN + V+V GC+ + + E+I P V V G Y + + Sbjct: 69 IGEAIN-KNGK--------VIVTGCLGK-DAEKIRTMHPAVLAVTGAHAYEEVISAVNH- 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K + +Y + K + ++ D G A++ I EGC+ CTFC++P RG + Sbjct: 118 HVPKPIKSKEY--DPKIDLIN--DAGIKLTPKHYAYVKISEGCNHRCTFCIIPSLRGDLV 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V+ EA L +GV E+ ++ Q+ +A W G L K F D+ Sbjct: 174 SRPIDSVMKEAVALKKSGVKELLVISQDTSAYGVDLKYKTVFWEGWPL---KSRFYDMCE 230 Query: 253 SLSEIKGLVRLRYTTSHP------RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 ++S++ VRL Y +P + M+D + + G + L+PYL +P Q S +LK+M Sbjct: 231 AMSKLGIWVRLHYVYPYPHVDAVVQIMADSMTASAG-MGGLLPYLDIPFQHASPNVLKAM 289 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + + I R++ PDI I S F+VGFPGETD+DF +D + K + F Sbjct: 290 KRPAMSENTLERIQAWRAICPDIVIRSTFVVGFPGETDEDFEYLLDWLTKARLDRVGCFT 349 Query: 367 YSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 YS G +++ V E+VK ERL+ LQ+K+ ++++ VG+ + VL+++ Sbjct: 350 YSEIEGAVANDLPNPVPESVKQSRYERLMALQQKISAEKLAEK---VGKTLVVLVDEIDT 406 Query: 424 EKGKLVGRS 432 E+ + RS Sbjct: 407 EENIAICRS 415 >gi|74317782|ref|YP_315522.1| hypothetical protein Tbd_1764 [Thiobacillus denitrificans ATCC 25259] gi|123731779|sp|Q3SI16|RIMO_THIDA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|74057277|gb|AAZ97717.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 443 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 134/408 (32%), Positives = 196/408 (48%), Gaps = 38/408 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P FV S GC DS R+ ++GY V S DDAD++V+NTC + A ++ Sbjct: 11 PTVGFV-SLGCPKATVDSERILTQLRAEGYGIVGSYDDADVVVVNTCGFIDAAVQESLEA 69 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G I E G V+V GC+ A+GE I P V V GP + L E++E Sbjct: 70 IGEA-------IAENGK--VIVTGCLG-AKGELIREVHPKVLAVSGP---HALDEVMEA- 115 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 V D F L I GG A+L I EGC+ C+FC++P RG + Sbjct: 116 -----VHGALPKPHDPFADL-IPPGGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 169 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + +V+ EA L+ GV E+ ++ Q+ +A W G+ + K ++L Sbjct: 170 SRPIGEVMHEAEALVSAGVQELLVVSQDTSAYGVDVKYRPGFWGGRPV---KTRMTELAR 226 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +L + VRL Y +P D +I D V++PYL +P Q S RILK M R Sbjct: 227 ALGSLGAWVRLHYVYPYPS--VDDVIPLMAD-GVILPYLDIPFQHASPRILKLMKRPGAV 283 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I R+ P++ + S FIVGFPGETD +F +D + + FKYSP G Sbjct: 284 EKTLDRIHAWRAAVPELTLRSTFIVGFPGETDPEFEELLDFLKHAQLDRVGCFKYSPIEG 343 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + + + V E +K ERL + E + DA +G+ IEVL+++ Sbjct: 344 AVANELPDPVPEELKDERLERFMETQAEISAARLDAKIGRTIEVLVDE 391 >gi|262166639|ref|ZP_06034376.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio mimicus VM223] gi|262026355|gb|EEY45023.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio mimicus VM223] Length = 470 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 135/456 (29%), Positives = 225/456 (49%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GYE VNS D+D++++NTC + A ++ +G Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI + P V + GP Y + E + + Sbjct: 96 ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F L + D G A+L I EGC+ CTFC++P RG +SR + ++ Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGL--------- 260 + EA +L + GV E+ ++ Q+ +A+ G+D + FS+ IK L Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFSNGSPVRHNIKALSEELGKMGI 256 Query: 261 -VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S R+LK M R A + I Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D + + + FKYSP G + + Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 +Q+ E VK ER + +Q+++ ++ +G ++VLI++ +E G+ +P Sbjct: 374 DQIPEEVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430 Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + +V LN + N G+++ V I L+G ++ Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466 >gi|268317548|ref|YP_003291267.1| MiaB-like tRNA modifying enzyme [Rhodothermus marinus DSM 4252] gi|262335082|gb|ACY48879.1| MiaB-like tRNA modifying enzyme [Rhodothermus marinus DSM 4252] Length = 441 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 135/434 (31%), Positives = 211/434 (48%), Gaps = 26/434 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ +E F ++ YE V + AD+ V+NTC + +A + R + Sbjct: 8 TLGCKLNFAETSTLERDFLARHYEVVPFGEPADVTVINTCTVTAEAERQC-------RQI 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I++ + ++V GC AQ EEI R V+VV+G + + L EL+E + K Sbjct: 61 IRRAIRQNPNAFIIVTGCYAQLRPEEIARIEG-VDVVLGAREKFHLFELIESFQ-KKEQT 118 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 S D+ + R R AFL IQ+GCD C+FC +P RG S+ + Sbjct: 119 QVAVSCIDELQEFGPAFSSTERTR---AFLKIQDGCDYVCSFCTIPKARGRSRSQPIEAT 175 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK--CTFSDLLYSLSEIKGLVRLRYTTS 268 V +AR+L + G EI L G N+ GL G++ T DLL L ++G+ R R ++ Sbjct: 176 VAQARQLAEMGFKEIVLTGVNI------GLYGQEFGATLLDLLRELDRVEGIERYRISSI 229 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++D +I + MP+ H+P+QSG + +L M RR+ Y + + RIR + PD Sbjct: 230 EPNLLTDEIIAFVAESRAFMPHFHMPLQSGDNFVLGKMRRRYRRELYAERVARIRELLPD 289 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VD 383 AI D IVGFP ET + F T ++++ + F YS R GT LE+ V Sbjct: 290 AAIGVDVIVGFPTETPERFENTYRFLNELPISYLHVFTYSERPGTAAVEQLERMGGQPVP 349 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + ++ R LQ +++ +F A GQ+ VL E K G + G + V Sbjct: 350 KPERSRRNRMLQVLSHKKRHAFYRAHQGQVRPVLWESTEKH-GLMYGYTDNYIRVQRPFD 408 Query: 444 NHNIGDIIKVRITD 457 +G I VR+ D Sbjct: 409 PERVGQIEPVRLGD 422 >gi|332799240|ref|YP_004460739.1| 30S ribosomal protein S12 methylthiotransferase rimO [Tepidanaerobacter sp. Re1] gi|332696975|gb|AEE91432.1| Ribosomal protein S12 methylthiotransferase rimO [Tepidanaerobacter sp. Re1] Length = 441 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 126/444 (28%), Positives = 222/444 (50%), Gaps = 19/444 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + Y N+ ++A +I++NTC ++A ++ + + L Sbjct: 9 SLGCDKNLVDSEYMLGILKKHNYTITNNENEAQIIIINTCGFIKEAKQESIDTILEMAQL 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K K G L++ GC+AQ E+L P ++ V+G + ++ E++++ K + Sbjct: 69 K----KLGKCRLLIATGCLAQRYKSELLTEIPELDAVIGTGDFDKICEVIQQLDSNKINL 124 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +YS D ++ S V R T+F+ I EGCD +C++C +P+ RG SR + + Sbjct: 125 TNNYSFID-YDVHSRV-----RIYPYTSFVKIAEGCDNYCSYCAIPFIRGSYRSRKIEAI 178 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 +E + L+ GV EI L+ Q+ + G + G + + +LL L +I G +R ++P Sbjct: 179 KEEVKILVAQGVKEINLVAQDTTNY-GVDIYG-RPSLPELLQELIKIDGEYLIRILYAYP 236 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 +++ L+ + YL +P+Q +DRIL+ M R + +ID IRS P+I Sbjct: 237 TNINKELLDVMLSSKKIANYLDIPLQHFNDRILRLMGRPTNSQSIITLIDNIRSRLPEIT 296 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 + + FIVGFP ET+ ++ +D + + + + FKYS T + ++ Q+ E +K +R Sbjct: 297 LRTTFIVGFPTETEAEYEQLLDFIREYKFDKVGVFKYSQEEDTVAAALMPQISEKIKQKR 356 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV---LNSK 443 L K N G+I+ VLIE + + +GRS P++ +V + Sbjct: 357 YNKLMKVQNSISKIKNQRFKGKILNVLIEGYDQANQIFIGRSENDAPFVDGIVKVLCGNG 416 Query: 444 NHNIGDIIKVRITDVKISTLYGEL 467 N +G I V+I + L G+L Sbjct: 417 NCELGQIYPVKILETYEYDLLGKL 440 >gi|126730999|ref|ZP_01746808.1| MiaB-like tRNA modifying enzyme [Sagittula stellata E-37] gi|126708715|gb|EBA07772.1| MiaB-like tRNA modifying enzyme [Sagittula stellata E-37] Length = 421 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 112/359 (31%), Positives = 183/359 (50%), Gaps = 30/359 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+ + G D +++NTC + +A K + R+R Sbjct: 9 TLGCRLNAYETEAMKRLAADAGL--------TDAMIVNTCAVTSEAVAKARKEIRRLR-- 58 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL-PELLERAR 144 ++ D ++V GC AQ + + + +V+ + P+T+ RL P+ + Sbjct: 59 -----RDNPDAPLIVTGCAAQIDPDSFAAMDEVTHVIGNTEKMAPETWQRLTPDFI--GD 111 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + +V+ SVE+ L +DG R R A++ +Q GCD CTFC++PY RG S Sbjct: 112 TPRVLVNDIMSVEETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRS 166 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 VVD+ ++L+ G E+ L G ++ +W G L GE DL+ + + + RLR Sbjct: 167 VPAGVVVDQIKRLVQEGYNEVVLTGVDLTSW-GADLPGEP-RLGDLVLRILRLTDVPRLR 224 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ + D L++A LMP+LHL +Q G D ILK M RRH + + + R+ Sbjct: 225 ISSIDSIEADDALMQAIATEPRLMPHLHLSLQHGHDLILKRMKRRHLRDDAIRFCEEARA 284 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +RPD+ +D I GFP ETD+ F A++ LV+ G F YS R GTP + + +VD Sbjct: 285 LRPDMTFGADIIAGFPTETDEHFDASLRLVEDCGLTWLHVFPYSARPGTPAAKIPNRVD 343 >gi|289751387|ref|ZP_06510765.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289691974|gb|EFD59403.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length = 319 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 96/254 (37%), Positives = 147/254 (57%), Gaps = 15/254 (5%) Query: 23 VPQRFF-VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P R + V++YGCQMNV+DS R+ + + GY R +AD++V NTC +RE A ++Y Sbjct: 22 APARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLY 81 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L + R + D+ + V GC+AQ + + +LRR+P V+VV G LP LLE Sbjct: 82 GNLSHL----APRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLE 137 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 RAR K V+ +++ L +R+ A+++I GC+ CTFC+VP RG Sbjct: 138 RARHNKVAQVEIAEALQQFPSSLP-----SSRESAYAAWVSISVGCNNSCTFCIVPSLRG 192 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSE 256 E+ RS + ++ E R L+++GV E+TLLGQNVNA+ L + F++LL + + Sbjct: 193 REVDRSPADILAEVRSLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGD 252 Query: 257 IKGLVRLRYTTSHP 270 I GL R+R+T+ HP Sbjct: 253 IDGLERVRFTSPHP 266 >gi|256811070|ref|YP_003128439.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86] gi|256794270|gb|ACV24939.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86] Length = 418 Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 134/455 (29%), Positives = 234/455 (51%), Gaps = 55/455 (12%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R +V+ YGC +N D+ +++ G++ V+++++AD++V+NTC +R + ++ + Sbjct: 4 RVYVEGYGCVLNTADTEIIKNSLKEAGFKLVDNLEEADIVVINTCVVRLETENRMIYRIN 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 ++NL VVVAGC+ +A L+ + + P+ Y+ E+L Sbjct: 64 ELKNLGKE---------VVVAGCLPKA-----LKNKVKDFLHIYPRESYKAGEILR---- 105 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNR---------KRGVTAFLTIQEGCDKFCTFCVVP 196 Y +E + R+ ++ N+ K + L I EGC C++C+V Sbjct: 106 --------YYIEKHY-RMPYIEEEINKTLYKKLDYLKPSLITPLPICEGCLGNCSYCIVK 156 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLS 255 RG IS ++V++A++LI+ GV + + Q+ + G D G+ ++LL L+ Sbjct: 157 IARGKLISYPREKIVNKAKELINKGVKCLFITAQDTACY---GFDIGD--NLANLLNDLT 211 Query: 256 EIKGLVRLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +I+G +R H +++ D LI+A+ + V +LHLP+QSG D ILK MNR +T Sbjct: 212 QIEGEFIMRVGMMHAKNVEPILDELIEAYQNEKV-GKFLHLPLQSGDDEILKKMNRGYTV 270 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 E+++I+D R ++ ++D IVGFPGET++ F+ T++++ ++ KYS R G Sbjct: 271 DEFKEIVDEFRRKVRNLCFTTDIIVGFPGETEEQFQNTLEVLKELKPDYIHGAKYSQRKG 330 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 T + M +QVD ++ R L K RE N VG+ + VL+ GK G + Sbjct: 331 TEAAKM-KQVDTKIRKRRSEILDKLRRELSYLNNKKYVGKTMRVLVLDEGK------GYT 383 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 + V+ + IG+ KV+ITD K L GE+ Sbjct: 384 DNFK--VVKFEGGEIGEFRKVKITDAKTFGLRGEI 416 >gi|256827179|ref|YP_003151138.1| MiaB-like tRNA modifying enzyme YliG [Cryptobacterium curtum DSM 15641] gi|256583322|gb|ACU94456.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Cryptobacterium curtum DSM 15641] Length = 477 Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 134/478 (28%), Positives = 219/478 (45%), Gaps = 62/478 (12%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 S+I + CI+ + GC N DS +M G+ +N AD+I++NTC Sbjct: 40 TSRIPNACII-------TMGCAKNEVDSAKMRGQLQEGGWSVINDPTAADVIIVNTCSFI 92 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY 133 + A E+ + + +LK R G +VVAGC+ G+++ Sbjct: 93 QAATEESLETIFEVADLKRVR---SGQAKIVVAGCMPARYGDDLSD-------------- 135 Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG------------------ 175 L E +RF S ED LS+VD +R + Sbjct: 136 ----SLTEASRF------VPCSKEDDI--LSVVDELIDRPKSSYAPGASSIPVVASSDPL 183 Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 +A++ I +GCD+FC++C +P+ RG S + + E + ID+G EI L+ Q+ W Sbjct: 184 YSAYVKISDGCDRFCSYCTIPFIRGRYHSFTFEVIEAEVTRCIDSGAREIVLIAQDTGRW 243 Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295 G+ D + T + L+ L+E+ R P ++D L+ A D + YL +P Sbjct: 244 -GQDFD-QPSTLACLMARLAELHPDTWFRVMYLQPEGVTDELLAAMASHDNICSYLDIPF 301 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355 Q +R+L SMNRR + Y+ +I+ +RS P I + + I G+PGE D+DF ++ +D Sbjct: 302 QHADERLLTSMNRRGSRAGYQTLIEHVRSCVPGITLRTTMIAGYPGERDEDFEEMLEFID 361 Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415 + F YS GT + + +QVDE +K ER L+ +G ++ Sbjct: 362 EADLDYVGVFAYSQEEGTRAARLSDQVDEAIKQERAQRLRDVADAHSQMRVAKRIGSTMD 421 Query: 416 VLIEKHGKEKGKLVGR----SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 VL+ +E G+L+GR +P + VV +G+I++V ITD + + GE V Sbjct: 422 VLV-LGCEEDGRLIGRAQCQAPDVDGVVYLDHGQ-VGEIVQVDITDTFLYEMEGECHV 477 >gi|237653780|ref|YP_002890094.1| ribosomal protein S12 methylthiotransferase [Thauera sp. MZ1T] gi|237625027|gb|ACR01717.1| MiaB-like tRNA modifying enzyme YliG [Thauera sp. MZ1T] Length = 443 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 138/463 (29%), Positives = 222/463 (47%), Gaps = 50/463 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC DS + ++GY S DDADL+V+NTC + A E+ Sbjct: 9 LPRVGFV-SLGCPKATVDSEHILTRLRAEGYAISGSYDDADLVVVNTCGFIDAAVEESLD 67 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + E G V+V GC+ A+ + IL P V V GP + + R Sbjct: 68 AIGEA-------LAENGK--VIVTGCLG-AKDDVILAAHPQVLAVTGPHATEEVMHAVHR 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 D F L + G A+L I EGC+ C+FC++P RG Sbjct: 118 HL---------PKPHDPFTDL-VPPQGIRLTPQHYAYLKISEGCNHRCSFCIIPSMRGDL 167 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR + +V+ EA L D GV E+ ++ Q+ +A W G+ + K DL Sbjct: 168 VSRPIHEVMREAEALADAGVKELLVISQDTSAYGVDVKYRTGFWGGRPV---KTRLLDLA 224 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L E+ +RL Y +P + A G + +PYL +P Q S RILK+M R Sbjct: 225 KALGELGIWIRLHYVYPYPSVDDLIPLMAEGKI---LPYLDVPFQHASPRILKAMKRPAN 281 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 A + + + RS+ P++ I S FI GFPGET++DF ++ +++ + +F YSP Sbjct: 282 AENVLERVRKWRSICPELTIRSTFITGFPGETEEDFEMLLNFLEEAQLDRVGAFAYSPVE 341 Query: 372 GTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 G + + V + V+ E RL+ Q+ + Q++ +A + + + VL+++ E+G L Sbjct: 342 GATANELPGAVPDEVREERRARLMDFQEDISTQRL---EAKIDREMTVLVDE-VDEEGAL 397 Query: 429 V---GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 G +P + +V+ + + GD ++VRITD + LY E Sbjct: 398 ARSPGDAPEIDGLVVIPEGDGLAPGDFVRVRITDCDVHDLYAE 440 >gi|218779734|ref|YP_002431052.1| RNA modification enzyme, MiaB family [Desulfatibacillum alkenivorans AK-01] gi|218761118|gb|ACL03584.1| RNA modification enzyme, MiaB family [Desulfatibacillum alkenivorans AK-01] Length = 437 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 123/408 (30%), Positives = 207/408 (50%), Gaps = 34/408 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ F++ + GC++N Y+S + + G RV AD++V+NTC + KA+ + Sbjct: 1 MPKTFYINTLGCKVNQYESDNLACILEKAGMTRVGEKQKADVVVVNTCTVTHKASTQS-- 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 R IK LV+ GC AQ+E E L V+ VV + +P+++E+ Sbjct: 59 -----RQALRQAIKAHKGALVLATGCYAQSE-PEALESIKGVSFVVDNTQRHLIPQIIEK 112 Query: 143 ARFGKRV--------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 K D+ V D V G +R FL IQ+GC+ FCT+C+ Sbjct: 113 ESPRKSAEKLCGEIRFHHDFPVPD-----IPVPGTRSR-----PFLKIQDGCNAFCTYCI 162 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 VPYTRG S V+ L G EI G ++ + G+ LD +DL+ L Sbjct: 163 VPYTRGPSRSMPWDAVLRHVAHLTGQGFGEIVFTGIHL-GYYGQDLDPP----TDLVSLL 217 Query: 255 SEIKGLV---RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 E++G + RLR ++ P+++S L+ + P+LHLP+QSG IL+ MNR ++ Sbjct: 218 KELEGRMESGRLRLSSIEPKEVSQDLLDLMAGSKRICPHLHLPLQSGDSEILERMNRPYS 277 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 A + +++ +R P+ I D +VGFPGET++ F+ + L++++ + F YS R Sbjct: 278 AEFFEELVHNVRKALPEAGIGVDVLVGFPGETEEHFKTALSLLERLPASYFHVFPYSQRQ 337 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 GTP + +QV +V A+R ++ ++++F+ +G+ +EV +E Sbjct: 338 GTPAAKFPDQVPPDVLAKRTKIIRGLGGLKRLAFHAGIIGKTVEVCVE 385 >gi|149280491|ref|ZP_01886609.1| possible 2-methylthioadenine synthetase [Pedobacter sp. BAL39] gi|149228735|gb|EDM34136.1| possible 2-methylthioadenine synthetase [Pedobacter sp. BAL39] Length = 439 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 116/394 (29%), Positives = 199/394 (50%), Gaps = 12/394 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + +F GY V+ D AD+ V+NTC + E A +K R + Sbjct: 8 TLGCKLNFSETSTIGRLFTDAGYAVVDFTDAADVYVINTCSVTEHADKKC-------RKV 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K + V + GC AQ + EI V++V+G +R+ E + + V Sbjct: 61 VKEALKYSPNAYVTIVGCYAQLKPAEIAEIEG-VDMVLGAAEKFRIVEYISDLTKAPKAV 119 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 ++E +R R FL +Q+GCD CT+C +P RG S ++ V Sbjct: 120 IHQQNIEKVNHNFIAAYSIGDRTR---TFLKVQDGCDYPCTYCTIPLARGGSRSDTIENV 176 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 ++ AR++ +GV EI L G N+ + + + E F DL+ +L E++G+ R+R ++ P Sbjct: 177 INRARQIAGSGVKEIVLTGVNLGDFGIRNGERED-KFFDLVKALDEVEGIERIRISSIEP 235 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 +S+ +I +P+ H+P+QSGS++IL M RR+ Y + ++ I+++ P+ Sbjct: 236 NLLSNEIINFVASSKRFVPHFHIPLQSGSNKILGLMRRRYQRELYTERVETIKALIPNCC 295 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I D IVGFPGET +DF T ++ + + F YS R TP + M V + +AER Sbjct: 296 IGVDVIVGFPGETQEDFLDTYQFLNGLDISYLHVFTYSEREQTPAAEMKGSVPGSSRAER 355 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 L +++ +F + + + EVL E K+ Sbjct: 356 SKMLHILSDKKRRAFYQSQIDTVGEVLFEDDQKD 389 >gi|261749373|ref|YP_003257058.1| putative 2-methylthioadenine synthetase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497465|gb|ACX83915.1| putative 2-methylthioadenine synthetase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 444 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 125/406 (30%), Positives = 207/406 (50%), Gaps = 24/406 (5%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N ++ + + YE V+ AD+ V+NTC + EKA EK + ++ R KN Sbjct: 12 GCKLNYAETSTIARKLSNSNYELVSFKSVADIYVINTCSVTEKA-EKDFKYVVRFFMKKN 70 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 ++ ++ GC AQ +EI P V++V+G + +++ + L++A K+ Sbjct: 71 AK------AFIIAIGCYAQIHPKEI-SSFPGVDLVLGMKEKFQIIDYLDQANLFKKNPAK 123 Query: 153 DYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 S E F SI D R R +F IQ+GCD C++C++P +RG S S+ + Sbjct: 124 IISKETNSYFPSYSIGD----RTR---SFFKIQDGCDYKCSYCIIPISRGFSRSESIENI 176 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGL----DGEKCTFSDLLYSLSEIK--GLVRLR 264 + R L G+ EI L G N+ + GK + G TF DL+ ++ +IK G R+R Sbjct: 177 LKNIRFLFKKGIKEIVLTGINIGDY-GKKIYGNHPGRSYTFFDLIQAIDQIKEEGRGRIR 235 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P + + I+ + MP+ H+P+QSGS+ IL M RR+ Y++ + IR+ Sbjct: 236 LSSIEPNLLKEKCIEFLSKSRLFMPHFHIPLQSGSNYILGKMQRRYRRELYQEKVQYIRN 295 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + PD I SD IVGFPGET + F T + K+ + F YS R T ++ ++V Sbjct: 296 LIPDAYIGSDIIVGFPGETHEHFLETYHFLKKLEISFLHIFPYSQRPNTKSLSIQKKVSP 355 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 V+ +R + L+ +++ SF + + VL E + G L G Sbjct: 356 EVQRKRKIILRVLSKQKYRSFCEKQIHTKKTVLFENNSVNHGYLYG 401 >gi|291280234|ref|YP_003497069.1| hypothetical protein DEFDS_1859 [Deferribacter desulfuricans SSM1] gi|290754936|dbj|BAI81313.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 411 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 119/403 (29%), Positives = 213/403 (52%), Gaps = 41/403 (10%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ ++GC++N+ +S ++ +G+ V+++++AD++V+N+C + E A +K F+ Sbjct: 3 KIYIHTFGCKVNLSESENIKLEGSQKGFLFVDNIEEADVVVINSCAVTELAEKKCNDFIK 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +I+ N + V+V GC A +EI ++ V+ + L E L Sbjct: 63 KIKKRYNIK--------VLVTGCYALILSKEI---KSYIDFVLDNEKKESLVEFLSNT-- 109 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 DY K K AFL IQ+GCD FCT+C++P+ RG S+ Sbjct: 110 ---FQLNDYKQTSK------------PKLKTRAFLKIQDGCDAFCTYCIIPFLRGKPKSK 154 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL----V 261 + +V+ E L++ EI L+G ++ + G+D T +LL + IK + Sbjct: 155 PIEKVIKEIDDLVNLNYKEIVLVGIHIGKY---GID-HNTTLKNLLKEI--IKQYQNKNI 208 Query: 262 RLRYTTSHPRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 R R ++ ++ D LI H + ++ + H+ +Q+GS++IL+ M RRHTA ++ I Sbjct: 209 RFRLSSLDVDEIDDELIDIVEHSN-GLICNHFHIALQNGSNKILQLMKRRHTAEDFIDIC 267 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++I+S D I +D IVGFP ETD+DF +T+++++K F YS R GT S M Sbjct: 268 NKIKSKIADCTIGTDVIVGFPEETDEDFESTINVLNKANVDYLHVFSYSKREGTLASKMK 327 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 Q+ EN+K ER L+K ++ +++ +G+ ++L+EK+G Sbjct: 328 NQIPENIKKERAKMLRKIGKKLKLNSELKMIGKTAKILLEKNG 370 >gi|190575308|ref|YP_001973153.1| ribosomal protein S12 methylthiotransferase [Stenotrophomonas maltophilia K279a] gi|238066609|sp|B2FP10|RIMO_STRMK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|190013230|emb|CAQ46864.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 453 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 138/463 (29%), Positives = 221/463 (47%), Gaps = 50/463 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ S+GY+ V S D AD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRSEGYDIVPSYDSADVVVVNTCGFIDSAVTESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N +N + V+V GC+ + E+I P V V GPQ Y + E + A Sbjct: 65 IGEAMN-QNGK--------VIVTGCLGK-RPEQIREAYPNVLAVSGPQDYQSVMEAVHEA 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K D F L + D G A+L I EGC+ C+FC++P RG + Sbjct: 115 LPPKH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRGKLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + +V+ EA +L+ GV E+ ++ Q+ +A WR K + L Sbjct: 165 SRPVDEVLREAERLVRGGVRELLVVSQDTSAYGVDVKYAEKMWRNKAY---QTRLKALCE 221 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 LSE+ VR+ Y +P D ++ + + ++PYL +P Q S RIL+ M R Sbjct: 222 GLSELDAWVRMHYVYPYPH--VDEVVPLMAE-NRILPYLDIPFQHASPRILRLMKRPGAV 278 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + + + R + PDI + S FIVGFPGET+ +F + +D+ + +F YSP G Sbjct: 279 EKTLERVQNWRRIAPDITVRSTFIVGFPGETEAEFEELLSFLDEAQLDRVGAFAYSPVEG 338 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 +++ + V E VK ERL +K + + +A +G + + L++ E V RS Sbjct: 339 ATANDLPDAVPEEVKQERLARFMEKQAQISAARLEAKIGTVQQCLVD--AIEGDIAVARS 396 Query: 433 ----PWLQSVVLNSKNHN-----IGDIIKVRITDVKISTLYGE 466 P + +V + +N + +G+ + V IT+ LYG+ Sbjct: 397 KADAPEIDGLV-HIQNADQVPLRVGEFVDVEITESDEHDLYGD 438 >gi|148557855|ref|YP_001257555.1| ribosomal protein S12 methylthiotransferase [Brucella ovis ATCC 25840] gi|238065299|sp|A5VUQ0|RIMO_BRUO2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|148369140|gb|ABQ62012.1| conserved hypothetical protein TIGR01125 [Brucella ovis ATCC 25840] Length = 438 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 148/468 (31%), Positives = 224/468 (47%), Gaps = 54/468 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ S+GYE D ADL+++NTC + A ++ Sbjct: 3 APRVSFV-SLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLE 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N E G V+V GC+ AE + I R P V + GPQ Y Sbjct: 62 AIGLALN-------ENGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAY--------- 102 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + V++ + V VD G A+L I EGC C+FC++P Sbjct: 103 ----ESVMNAVHEVAPPPPHDPFVDLVPPQGVKLTPRHYAYLKISEGCSNRCSFCIIPAL 158 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTF 247 RG +SR +++V+ EA KL+ GV EI ++ Q+ +A+ GLD + + F Sbjct: 159 RGDLVSRPINEVLREAEKLVQAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKF 215 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 DL L E+ VR+ Y +P + A G + +PYL +P Q S +LK+M Sbjct: 216 LDLSRELGEMGVWVRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPAVLKNMR 272 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + + I R PD+A+ S FIVG+PGET++DF+ +D +D+ +A FKY Sbjct: 273 RPAHQEKTSRRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKY 332 Query: 368 SPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKE 424 G +++ LEQV E VK R K +QQ+S N VG+ + V+I++ Sbjct: 333 EAVKGAKANDLGLEQVPEEVKEARWHRFMAK--QQQISTNLLKKKVGKRLPVIIDEANGT 390 Query: 425 KGKLVGR--SPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 GK R +P + SV ++S+ +GDI+ V+I L+G V Sbjct: 391 IGKGRTRYDAPEIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 438 >gi|320450578|ref|YP_004202674.1| hypothetical protein TSC_c15080 [Thermus scotoductus SA-01] gi|320150747|gb|ADW22125.1| conserved hypothetical protein [Thermus scotoductus SA-01] Length = 434 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 138/452 (30%), Positives = 214/452 (47%), Gaps = 45/452 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ + GYE + ++A+L+V+NTC A E+ +G Sbjct: 8 SLGCPKALVDSEQILSRLKALGYETSATYEEAELVVVNTCGFITPAIEESLEAIGEA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G VVV GC+ A E I R P V V GP R+ + ++ R Sbjct: 65 ----LRENGK--VVVTGCLG-ARPEVIRERYPNVLEVTGPGEVERVLQAVQEVLPAPR-- 115 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 L ++ A+L + EGCD C+FC++P RG SR +V Sbjct: 116 ---------NPLLDLIPPQVKLTPRHYAYLKLSEGCDHRCSFCIIPKLRGGLRSRDAGEV 166 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD--------GE---KCTFSDLLYSLSEIKG 259 + EA +L+ G E+ L+ Q+++A+ G+D G+ K DLL ++E+ Sbjct: 167 LAEAARLVATGTRELLLIAQDLSAY---GVDLRHRESFWGDRLVKAELKDLLSHMAELGA 223 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +RL Y +P + A G + +PYL +P+Q S+RIL+ M R + + + Sbjct: 224 WIRLHYVYPYPHVRELLPLMAEGKV---LPYLDVPLQHASERILRLMRRPGGYQSHLKTL 280 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R V P++AI S FIVGFPGET++DF+ +D + + + F YSP G + + Sbjct: 281 KAWREVVPELAIRSSFIVGFPGETEEDFQILLDFLQEAELDRVGVFTYSPVEGAEANALS 340 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435 V E VK ER L + E + N + VG+ +EVL+++ E G VGR SP + Sbjct: 341 GHVPEEVKEERKARLMEVQAEISLRKNQSFVGKTLEVLVDEL-PEPGLAVGRSYRDSPGI 399 Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465 +V +G+ I VRIT LYG Sbjct: 400 DGLVYVETDGTARVGERIPVRITRADTYDLYG 431 >gi|183179613|ref|ZP_02957824.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|229524596|ref|ZP_04414001.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae bv. albensis VL426] gi|254285814|ref|ZP_04960776.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|297581460|ref|ZP_06943383.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|150423996|gb|EDN15935.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|183013024|gb|EDT88324.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|229338177|gb|EEO03194.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio cholerae bv. albensis VL426] gi|297534298|gb|EFH73136.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 470 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 132/456 (28%), Positives = 225/456 (49%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GYE VNS D+D++++NTC + A ++ +G Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI + P V + GP Y + E + + Sbjct: 96 ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F L + D G A+L I EGC+ CTFC++P RG +SR + ++ Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259 + EA +L + GV E+ ++ Q+ +A+ G+D + + L L ++ Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S R+LK M R A + I Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D + + + FKYSP G + + Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 +Q+ E+VK ER + +Q+++ ++ +G ++VLI++ +E G+ +P Sbjct: 374 DQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430 Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + +V LN + N G+++ V I L+G ++ Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466 >gi|295115538|emb|CBL36385.1| MiaB-like tRNA modifying enzyme [butyrate-producing bacterium SM4/1] Length = 443 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 139/444 (31%), Positives = 228/444 (51%), Gaps = 37/444 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+ M GYE V + AD+ V+NTC + A +K L R + + Sbjct: 10 GCKVNAYETEAMQQMLEDAGYEIVPFREGADVYVINTCSVTNVADKKSRQMLHRAKKMNP 69 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD- 151 S + VV AGC QA GEE L++ V++V+G L E+LER D Sbjct: 70 SAV-------VVAAGCYVQAAGEE-LKKDEAVDLVIGNNRKKDLVEVLERYFNEHEGTDD 121 Query: 152 -TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D ++E+L I + + AF+ +Q+G ++FC++C++PYTRG SR + V Sbjct: 122 IIDIGKTSEYEKLHIRKIADHTR----AFIKVQDGYNQFCSYCIIPYTRGRVRSRPMEDV 177 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--------FSDLLYSLSEIKGLVR 262 V E L +G EI L G +++++ G D ++ L+ L I G+ R Sbjct: 178 VQEVEALAASGYKEIVLTGIHLSSY---GADFKRTAENPEAAADLLSLIVRLDRIPGIER 234 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R + PR ++D + L P+ HL +QSG + LK MNR +T +Y + + Sbjct: 235 IRLGSLEPRIITDEFAETLAGLKSFCPHFHLSLQSGCNETLKRMNRHYTTEDYEARCEIL 294 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + AI++D IVGFP ET+++F T + +I + + FKYS R GT + M QV Sbjct: 295 RRYFHNPAITTDVIVGFPQETEEEFEETRQFLKRIHFYEMHIFKYSRREGTRAAVMEGQV 354 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRS-PWLQ 436 E KAER LL L++++ + + +G+ EVL+E+ G+ +VG + +++ Sbjct: 355 PEPKKAERSDILLALEEQM---SLEYRRTFLGKEEEVLLEERISVDGEDYMVGHTRQYVK 411 Query: 437 SVVLNS---KNHNIGDIIKVRITD 457 +VV KN + +++ +TD Sbjct: 412 AVVPYREGLKNVTVRGVMERMVTD 435 >gi|325923369|ref|ZP_08185039.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas gardneri ATCC 19865] gi|325546139|gb|EGD17323.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas gardneri ATCC 19865] Length = 457 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 140/460 (30%), Positives = 215/460 (46%), Gaps = 44/460 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V S D AD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N V+V GC+ + E+I P V V GPQ Y + E + A Sbjct: 65 IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D F L + D G A+L I EGC+ C+FC++P RG Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLA 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254 SR + +V+ EA +L+ GV E+ ++ Q+ +A+ G L + + D +Y L Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 SE+ RL Y +P + A G L +PYL +P Q S RILK M R + Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + + R +++ P+I + S FIVGFPGETD +F + +D +D+ + +F YSP G Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVQGAS 340 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432 + + + V E +K ERL K E + +A +G + + L++ E V RS Sbjct: 341 ANALPDPVPEELKQERLARFMAKQAEISAARLEAKIGSVQQCLVDV--IEDDIAVARSRA 398 Query: 433 --PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466 P + +V IGD++ V ITD L+G+ Sbjct: 399 DAPEIDGLVHIQNGGELGLKIGDLVDVEITDSDEHDLFGD 438 >gi|307718563|ref|YP_003874095.1| hypothetical protein STHERM_c08730 [Spirochaeta thermophila DSM 6192] gi|306532288|gb|ADN01822.1| hypothetical protein STHERM_c08730 [Spirochaeta thermophila DSM 6192] Length = 449 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 137/458 (29%), Positives = 214/458 (46%), Gaps = 43/458 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + F GY DL ++NTC + K+ +K + +I Sbjct: 9 TLGCKLNQYETEGIAAAFREAGYRIGEFPQSGDLYIVNTCTVTSKSEQKARRIIRKI--- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEI--LRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +E + LVVV GC Q E +E+ L I + +LP R Sbjct: 66 ----AREHPEALVVVTGCYPQLERDEVQALSDRVIALPLEEKPLLLQLP---------SR 112 Query: 149 VVDTDYSVEDKFERL-------SIVDGGYNR--------KRGVTAFLTIQEGCDKFCTFC 193 + D D + ERL + +DG R +FL IQ+GCD+ C +C Sbjct: 113 LQDEDLD-PSRVERLLQEIRTQAPLDGTAGRFLYRVDRPAFHARSFLKIQDGCDRRCAYC 171 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 VP RG +S +++++ ++L GV EI L G N+ +R E LL Sbjct: 172 RVPLARGRAVSDDPARILERVQELEGRGVREIVLTGVNLAQYRW-----ESLDLGGLLLH 226 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 L +R R ++ P S+ L +A + P+ HLPVQSGS+R+LK M R +TA Sbjct: 227 LLSHTSRLRFRISSLEPEGFSEALWEALSSPRIC-PHFHLPVQSGSNRVLKRMGRWYTAE 285 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 E +I R+R V PD IS DFIVGFPGET +DF AT +D+ ++ A F+YSPR GT Sbjct: 286 EISALIARLREVSPDPFISGDFIVGFPGETREDFEATCAFLDENAFSGAHLFRYSPRPGT 345 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 V E V ER L + ++ G+++EV+ E+ ++ G+ Sbjct: 346 AAYASKAHVPERVAKEREEALHACVEVYASAYLARQRGRVVEVIPEQEREKAGQRYAVGT 405 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDV---KISTLYGELV 468 +++ + G+ ++V + DV + ++YG V Sbjct: 406 SENYLLVWAPVPLEGETVRVEVGDVVEGEPRSVYGSPV 443 >gi|206901571|ref|YP_002251173.1| hypothetical protein DICTH_1354 [Dictyoglomus thermophilum H-6-12] gi|238065337|sp|B5YF65|RIMO_DICT6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|206740674|gb|ACI19732.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12] Length = 440 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 129/449 (28%), Positives = 217/449 (48%), Gaps = 31/449 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC N D+ + GY + +ADL+++NTC + A ++ + ++ K Sbjct: 10 GCSKNQVDTEILMGFLKELGYTFTPYLGEADLVLVNTCAFIKPAWQEAEENINFLKEYKE 69 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 + +L +VV GC + +E+ R P V++ +GP Y + L+ G+R + + Sbjct: 70 N----NKNLKIVVTGCYVERFEKELEDRYPFVDLFIGPGEYDKFVSLITSN--GERKIHS 123 Query: 153 D----YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + K R+ I + ++ I EGC+ FC++C +P+ RG SRS+ Sbjct: 124 SPASSFMYTHKMPRVLISPNFW-------VYVKISEGCNNFCSYCTIPFIRGRLRSRSID 176 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++ E L+ GV EI L+ Q+ + G+ L G K DLL S+ IKG +R S Sbjct: 177 DIIKEVEILVQKGVKEINLIAQDTTRY-GEDLYG-KSALVDLLKSIENIKGDFYVRILYS 234 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ LI + ++PY +P+Q +D ILK MNR + + ++ IR D Sbjct: 235 YPSRVTKDLINFIKVSEKVVPYFDIPIQHVNDEILKKMNRSYKKDDIIRVWSTIRENFED 294 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I + +VGFPGET+++F + + + + +F Y GT N Q+DE+ K Sbjct: 295 AVIRTTVMVGFPGETEENFEELIAFIKAYPFDRLGAFTYYNEEGTISKNFDGQIDEDEKI 354 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRS----PWLQSVVL--- 440 R L +E N +G+ +V+IE EKGK +GRS P + V++ Sbjct: 355 RRYDILMSTQKEISKKLNAKLLGREFDVIIE---NEKGKYFIGRSWREAPEVDGVIMIPK 411 Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGELV 468 S++ +IGD ++V+I + L GELV Sbjct: 412 EGSRSISIGDRVRVKIKKYRAYDLLGELV 440 >gi|187476722|ref|YP_784746.1| ribosomal protein S12 methylthiotransferase [Bordetella avium 197N] gi|115421308|emb|CAJ47813.1| putative radical SAM protein [Bordetella avium 197N] Length = 442 Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 141/468 (30%), Positives = 229/468 (48%), Gaps = 58/468 (12%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE +DAD++V+NTC + A + Sbjct: 7 APRVGFV-SLGCPKALVDSERILTQLRTEGYEVTPEYNDADVVVVNTCGFIDSAKAESLD 65 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + E G V+V GC+ E I P V V GPQ Y ++ + + Sbjct: 66 AIGEA-------LAENGK--VIVTGCMG-VEESAIRSVHPSVLAVTGPQQYEQVVQAVHS 115 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A + +D + +V G A+L I EGC+ C+FC++P RG Sbjct: 116 AAPPR---------QDHNPYVDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGN 166 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +SR + V++EA +L+ GV E+ ++ Q+ +A W G+ + K ++L Sbjct: 167 LVSRPVGDVLNEAERLVKAGVKELLVISQDTSAYGVDLKYRSGFWNGRPV---KTRMTEL 223 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +LSE+ RL Y +P + A G + +PYL +P Q S RILK+M R Sbjct: 224 CDALSELGVWTRLHYVYPYPSVDDIIPLMAEGKV---LPYLDIPFQHASPRILKAMKR-- 278 Query: 311 TAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 A+E + + I + R+ PD+ I S FIVGFPGET++DF+ +D + + + F+YS Sbjct: 279 PAFEDKTLARIHQWRAACPDLTIRSTFIVGFPGETEEDFQYLLDWMSEAQLDRVGCFQYS 338 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGKE 424 P G P + + V + VK ER ++ E Q + + A +G+ I+VLI++ ++ Sbjct: 339 PVEGAPANALAGIVPDEVKQERW----ERFMEHQQAISAARLQTRIGREIDVLIDEVDED 394 Query: 425 KGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 VGRS P + V S + + GD+++VR+TD L+ + Sbjct: 395 GA--VGRSSADAPEIDGCVYVSSDTPVKPGDMVRVRVTDADEYDLWAD 440 >gi|319405657|emb|CBI79280.1| putative enzyme [Bartonella sp. AR 15-3] Length = 437 Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 146/465 (31%), Positives = 219/465 (47%), Gaps = 47/465 (10%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + P+ FV S GC + DS R+ S+GYE N ADL+++NTC Sbjct: 2 VAPRISFV-SLGCPKALVDSERIITRLRSEGYEISNKHKGADLVIVNTC----------- 49 Query: 82 SFLGRIRNLKNSRIKEG--GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 F+ RN + I E + V+V GC+ A+ IL+ P V + GPQ Y E Sbjct: 50 GFIDSARNESLANIDEAIKNNGKVIVTGCLG-AQPNIILQAYPNVFAITGPQDY----ES 104 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + RA V V D F L G R A+L I EGC C+FC++P R Sbjct: 105 VIRA-----VHTVIPPVHDPFVDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLR 158 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G ISR +S V+ EA KL+ GV E+ ++ Q+ A W+ + + K F Sbjct: 159 GNLISRPISDVLHEAEKLVQAGVKELLVISQDTGAYGIDLKYAESVWKNRII---KTKFL 215 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 DL L E+ VR+ Y +P + A G ++PYL +P Q S +L++M R Sbjct: 216 DLCRELGEMGIWVRMHYLYPYPHIDEAIELMAAGK---ILPYLDIPFQHASPTVLRNMKR 272 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + + I+R R + PD+ + S FIVGFPGET++DF ++ +++ +A FKY Sbjct: 273 PAHVEKISRRIERWRKICPDLTLRSTFIVGFPGETNEDFNMLLEWLEEAKIERAGCFKYE 332 Query: 369 PRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK-EK 425 G +++ LE + E VK +R K ++ +G+ ++VLI E GK K Sbjct: 333 AVQGAVANDLGLENITEEVKEQRWHRFMTKQQKISAHLLKKKIGKRLQVLIDETQGKIAK 392 Query: 426 GKLVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468 G+ SP + VV S IG+ + V+I LYG ++ Sbjct: 393 GRSKYDSPEIDGVVHISSRRPLRIGEFVTVKIEQSDSYDLYGNVI 437 >gi|78485658|ref|YP_391583.1| hypothetical protein Tcr_1314 [Thiomicrospira crunogena XCL-2] gi|123741577|sp|Q31G14|RIMO_THICR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|78363944|gb|ABB41909.1| MiaB-like tRNA modifying enzyme [Thiomicrospira crunogena XCL-2] Length = 453 Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 135/441 (30%), Positives = 214/441 (48%), Gaps = 42/441 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC DS R+ ++GY NS ++AD +++NTC + A ++ +G + Sbjct: 12 SLGCPKATVDSERILTQLKAEGYHLTNSYEEADAVIVNTCGFIDSAVQESLDTIGEALD- 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ +G I + P V V GP Y + + A + Sbjct: 71 ENGR--------VIVTGCLGAKDGV-IEKVHPSVLAVSGPAAYEEVLTAVHEAIAPPK-- 119 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L + G A+L I EGC+ CTFC++P RG +SR +S V Sbjct: 120 ------HDPFVDL-VPPQGIKLTPKHFAYLKISEGCNHRCTFCIIPSMRGNLVSRPVSDV 172 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVR 262 V EAR+L + GV E+ ++ Q+ A+ + + DG K + L +LSE+ VR Sbjct: 173 VAEARRLKEAGVKELLVVSQDTAAYGVDVKYKTEFADGRPTKTSMFGLAEALSELGIWVR 232 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G L +PYL +P+Q ILK+M R + + I + Sbjct: 233 LHYVYPYPNVEDVIPLMAEGKL---LPYLDMPLQHADPDILKAMKRPGNVDKTLERIKKW 289 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PD+ I S FIVGFPGET+ F+ +D +++ + F+YSP G +++ E V Sbjct: 290 REQVPDLTIRSTFIVGFPGETEAQFQNLLDFIEEAQLDRVGCFQYSPVEGAVANDLAEPV 349 Query: 383 DENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436 + VK ER + +QQ+S N A +G+ I+VL+++ +E + RS P + Sbjct: 350 PDEVKQERFDRFMQ--LQQQISANKMQAKIGKTIQVLVDEVDEEGA--IARSKADAPEID 405 Query: 437 SVVLNSKNH--NIGDIIKVRI 455 +V + H N GD ++V + Sbjct: 406 GMVFIPEGHHLNPGDFVEVEV 426 >gi|21243462|ref|NP_643044.1| ribosomal protein S12 methylthiotransferase [Xanthomonas axonopodis pv. citri str. 306] gi|81800989|sp|Q8PJ10|RIMO_XANAC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|21109018|gb|AAM37580.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 457 Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 140/460 (30%), Positives = 216/460 (46%), Gaps = 44/460 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V S D AD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N V+V GC+ + E+I P V V GPQ Y + E + A Sbjct: 65 IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D F L + D G A+L I EGC+ C+FC++P RG + Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254 SR + +V+ EA +L+ GV E+ ++ Q+ +A+ G L + + D LY L Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRLYQTRMKALCEGL 223 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 SE+ RL Y +P + A G L +PYL +P Q S RILK M R + Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIGLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + + R +++ P+I + S FIVGFPGETD +F + +D +D+ + +F YSP G Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAS 340 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432 + + +QV E VK ERL K + ++ +G + + L++ E V RS Sbjct: 341 ANALPDQVPEEVKQERLARFMAKQAQISALRLESKIGSVQQCLVDV--IEDDIAVARSRA 398 Query: 433 --PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466 P + +V +GD++ V ITD L+G+ Sbjct: 399 DAPEIDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 438 >gi|261211176|ref|ZP_05925465.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio sp. RC341] gi|260839677|gb|EEX66288.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio sp. RC341] Length = 470 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 131/456 (28%), Positives = 225/456 (49%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GYE VNS D+D++++NTC + A ++ +G Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI + P V + GP Y + E + + Sbjct: 96 ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F L + D G A+L I EGC+ CTFC++P RG +SR + ++ Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259 + EA +L + GV E+ ++ Q+ +A+ G+D + + L L ++ Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +RL Y +P + A G + +PYL +P Q S R+LK M R A + I Sbjct: 257 WIRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D + + + FKYSP G + + Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 +Q+ E+VK ER + +Q+++ ++ +G ++VLI++ +E G+ +P Sbjct: 374 DQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430 Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + +V LN + N G+++ V I L+G ++ Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466 >gi|116622276|ref|YP_824432.1| MiaB-like tRNA modifying enzyme [Candidatus Solibacter usitatus Ellin6076] gi|116225438|gb|ABJ84147.1| MiaB-like tRNA modifying enzyme [Candidatus Solibacter usitatus Ellin6076] Length = 444 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 114/397 (28%), Positives = 197/397 (49%), Gaps = 19/397 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +FFV+++GC+ D +E + ++G E + ADL+VLNTC + A + V + Sbjct: 3 KFFVQNFGCRATQADGAALESLLAAKGLEATGARAGADLVVLNTCTVTASADDDVRQTIR 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R+ +E ++V GC AQ EE++ P V VVG ++ E++ A Sbjct: 63 RVH-------RENPAARILVTGCYAQRAPEELIAL-PGVEWVVGNSHKTQIAEIVTAAPV 114 Query: 146 GKRVVDTDYSVEDKFER-----LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + + + D F + + D +R R L IQ+GC+ C+FC++P+ RG Sbjct: 115 TEAFYHGNIHIGDIFAQHDFLSAPVEDAAGDRTR---PNLKIQDGCNNRCSFCIIPFVRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S +QVV++ R L E+ L G N+ W + G + LL L + Sbjct: 172 RSRSAPAAQVVEQVRALAAR-YHEVVLSGINLGRWGRE--PGSSMRLAGLLRLLLAETDV 228 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ P D S+ L+ + ++H P+QSGSDR+L+ M+R++ Y + Sbjct: 229 ARLRLSSVEPMDFSEDLLHLMAASPRIANHVHAPLQSGSDRVLRRMHRKYRPRHYADRVL 288 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + R++ PD AI +D +VGFPGETD +F + ++++ + F YS R GTP + Sbjct: 289 KARALMPDGAIGADVMVGFPGETDAEFEESRRFIEQLPFTYLHVFTYSERPGTPAAESEH 348 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417 V V+ ER L++ + ++F ++ +G+ + + Sbjct: 349 PVPMPVRKERNRVLRELAAAKNLAFRESMIGRTLSAV 385 >gi|310819551|ref|YP_003951909.1| MiaB-like tRNA modifying enzyme YliG [Stigmatella aurantiaca DW4/3-1] gi|309392623|gb|ADO70082.1| MiaB-like tRNA modifying enzyme YliG [Stigmatella aurantiaca DW4/3-1] Length = 459 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 130/449 (28%), Positives = 217/449 (48%), Gaps = 29/449 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N DS M +GY V +A +IV+NTC A ++ + + Sbjct: 2 TLGCPKNRVDSEVMLGTLKQRGYRLVQEPAEAQVIVVNTCAFIGPAKQESVDSILEMAEY 61 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K S G +VV GC++Q G E+ + P V+ +G Y ++ +LL ++V+ Sbjct: 62 KKS----GACSTLVVTGCLSQRHGGELAQEMPEVDHFLGTSAYAQIGDLLAAEASPRQVI 117 Query: 151 -DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 D DY + R N TA+L + EGCD C FC++P RG + SR ++ Sbjct: 118 PDPDYIHNAETPR-------ENSMPSYTAYLKVSEGCDNACAFCIIPTLRGGQRSRPIAD 170 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTS 268 ++ EA +L D GV E+ L+ Q++ A+ G L G K DLL L ++ +RL Y + Sbjct: 171 IIAEATRLADQGVQELNLVAQDLTAY-GHDLPG-KPKLHDLLKELVKVDVRWIRLHY--A 226 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +PR D LI+ + YL +P+Q SD++L SM R + ++ ++R+ P Sbjct: 227 YPRIFPDELIEVMATEKKIAKYLDMPLQHASDKLLTSMKRGRNSQFLTDLLAKLRARVPG 286 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + + + IVG PGET++DF + V + + F+YS GT +M ++ + Sbjct: 287 LVMRTSLIVGLPGETEEDFELLKEFVKTQRFERLGVFQYSDEEGTAAYDMPNKIPQKTIE 346 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQ-SVV 439 R ++ +QK++ +Q N VG+ IEVL+E E G+ G++P + V Sbjct: 347 RRWREIMAIQKRINREQ---NKKLVGKRIEVLVEGTSPETEHLLVGRHEGQAPEIDGQVY 403 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 +N G+ + + +T+ L G +V Sbjct: 404 INDGLAYPGEFVTLEVTEAHDYDLVGRVV 432 >gi|227082736|ref|YP_002811287.1| hypothetical protein VCM66_2540 [Vibrio cholerae M66-2] gi|298500557|ref|ZP_07010361.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae MAK 757] gi|227010624|gb|ACP06836.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|297540726|gb|EFH76783.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae MAK 757] Length = 470 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 132/456 (28%), Positives = 224/456 (49%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GYE VNS D+D++++NTC + A ++ +G Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI + P V + GP Y + E + + Sbjct: 96 ----LKENGQ--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F L + D G A+L I EGC+ CTFC++P RG +SR + ++ Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259 + EA +L + GV E+ ++ Q+ +A+ G+D + + L L ++ Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S R+LK M R A + I Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D + + + FKYSP G + + Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 +Q+ E+VK ER + +Q+++ ++ +G ++VLI++ E G+ +P Sbjct: 374 DQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDDEGAIGRTYADAPE 430 Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + +V LN + N G+++ V I L+G ++ Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466 >gi|194366638|ref|YP_002029248.1| ribosomal protein S12 methylthiotransferase [Stenotrophomonas maltophilia R551-3] gi|238066608|sp|B4SQX0|RIMO_STRM5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|194349442|gb|ACF52565.1| MiaB-like tRNA modifying enzyme YliG [Stenotrophomonas maltophilia R551-3] Length = 453 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 138/463 (29%), Positives = 221/463 (47%), Gaps = 50/463 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ S+GY+ V S D AD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRSEGYDIVPSYDSADVVVVNTCGFIDSAVTESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N +N + V+V GC+ + E+I P V V GPQ Y + E + A Sbjct: 65 IGEAMN-QNGK--------VIVTGCLGK-RPEQIREAYPNVLAVSGPQDYQSVMEAVHEA 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K D F L + D G A+L I EGC+ C+FC++P RG + Sbjct: 115 LPPKH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRGKLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + +V+ EA +L+ GV E+ ++ Q+ +A WR K + L Sbjct: 165 SRPVDEVLREAERLVRGGVRELLVVSQDTSAYGVDVKYAEKMWRDKAY---QTRLKALCE 221 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 LSE+ VR+ Y +P D ++ + + ++PYL +P Q S RIL+ M R Sbjct: 222 GLSELDAWVRMHYVYPYPH--VDEVVPLMAE-NRILPYLDIPFQHASPRILRLMKRPGAV 278 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + + + R + PDI + S FIVGFPGET+ +F + +D+ + +F YSP G Sbjct: 279 EKTLERVQNWRRIAPDITVRSTFIVGFPGETEAEFEELLSFLDEAQLDRVGAFAYSPVEG 338 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 +++ + V E VK ERL +K + + +A +G + + L++ E V RS Sbjct: 339 ATANDLPDAVPEEVKQERLARFMEKQAQISAARLEAKIGTVQQCLVD--AIEGDIAVARS 396 Query: 433 ----PWLQSVVLNSKNHN-----IGDIIKVRITDVKISTLYGE 466 P + +V + +N + +G+ + V IT+ LYG+ Sbjct: 397 KADAPEIDGLV-HIQNADQVALRVGEFVDVEITESDDHDLYGD 438 >gi|162452546|ref|YP_001614913.1| hypothetical protein sce4270 [Sorangium cellulosum 'So ce 56'] gi|238066605|sp|A9F1Y8|RIMO_SORC5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|161163128|emb|CAN94433.1| hypothetical protein sce4270 [Sorangium cellulosum 'So ce 56'] Length = 488 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 129/456 (28%), Positives = 223/456 (48%), Gaps = 36/456 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N DS M + + G+ V+ +A++IV+NTC I E E + + ++ Sbjct: 10 SLGCPKNRVDSEVMLGVARAAGFAHVDDAAEAEVIVVNTCGFIGEAKKESIDAIFEMAQH 69 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL----ERARF 145 ++ K +VVAGC++Q EE+ R P V+ +G +L +L ER Sbjct: 70 KEHGSCKR-----LVVAGCLSQRHPEELAREMPEVDHFLGSSDMLKLGRVLAGDAERMLV 124 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G ++ ++ R GG +A++ I EGC++ C+FCV+P RG + SR Sbjct: 125 GN---PAEWLIQAGDPRTLSTPGG-------SAYVKIAEGCNRTCSFCVIPDLRGAQRSR 174 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLV 261 + VV E +L GV EI L+ Q+ A+ G+ G + T + L+ ++++ G+ Sbjct: 175 PIPDVVREVEQLAAAGVREINLISQDTIAYGRDAAGRSEGGARATLAQLVERVADVPGVR 234 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R +P M+D L++ ++PY+ +P+Q +D +L+ M R H R+++ Sbjct: 235 WVRLFYLYPETMTDDLVELLAGHPRVVPYVDMPLQHAADAMLRRMRRGHGGDRLRRVVST 294 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R PD+ + FIVG PGETD +F D V + + F+YS + + + Sbjct: 295 LRERVPDLTFRTAFIVGHPGETDAEFEELCDFVRWAEFERVGVFRYSDEEASRSYELEGK 354 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSP 433 V A RL+ LQ+++ ++ + A +G+ +EVL+E E G+ G++P Sbjct: 355 VPARTAASRYRRLMTLQRRISHKKSA---AMIGRELEVLVEGTSDEHEYVLMGRHAGQAP 411 Query: 434 WLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V L+ G++ +VRIT L GEL+ Sbjct: 412 EIDGQVYLSGGEVRPGEMCRVRITQASDYDLVGELL 447 >gi|146340736|ref|YP_001205784.1| ribosomal protein S12 methylthiotransferase [Bradyrhizobium sp. ORS278] gi|238065296|sp|A4YUI3|RIMO_BRASO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|146193542|emb|CAL77559.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 445 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 142/467 (30%), Positives = 226/467 (48%), Gaps = 54/467 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE D AD++++NTC + A ++ + Sbjct: 10 APKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADVVIVNTCGFLDSAKQESLA 68 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G S + E G V+V GC+ AE E+I + P V + GPQ Y + + + R Sbjct: 69 AIG-------SAMAENGK--VIVTGCMG-AEPEQIEQAYPGVLSITGPQQYESVLDAVHR 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D + G A+L I EGC+ C+FC++P RG Sbjct: 119 ASPPVHNPHLDL----------VPPQGIKLTPRHYAYLKISEGCNNRCSFCIIPKLRGDL 168 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR + V+ EA +L+ GV E+ ++ Q+ +A W+ + + + F DL Sbjct: 169 VSRPAADVLREAERLVAAGVKELLVISQDTSAYGLDIKYAESPWKDRSV---RARFLDLA 225 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L E+ VRL Y +P D +I D VL PYL +P Q S +LK+M RR Sbjct: 226 RELGELGAWVRLHYVYPYPH--VDEVIGLMTDGKVL-PYLDIPFQHASPNVLKAM-RRPA 281 Query: 312 AYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 A + + +DRI++ R PD+A+ S FIVGFPGETD+DF +D +D+ + FKY Sbjct: 282 AQD--KTLDRIKAWRGACPDLALRSTFIVGFPGETDEDFAYLLDWLDEAEIDRLGCFKYE 339 Query: 369 PRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-- 423 P G + + QV + VK ER L+ Q+K+ +++ VG +++I++ G Sbjct: 340 PVAGATSNALPGQVPDEVKQERWNALMARQQKISARRLKRK---VGTRQQIIIDEVGPTV 396 Query: 424 EKGKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 KG+ +P + V S + G+I+ +I L+G + Sbjct: 397 AKGRSKADAPEIDGAVYLSSRRPLRAGEIVTAKIERADEYDLHGTVA 443 >gi|289669414|ref|ZP_06490489.1| hypothetical protein XcampmN_13164 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 454 Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 140/460 (30%), Positives = 215/460 (46%), Gaps = 44/460 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V S D AD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N V+V GC+ + E+I P V V GPQ Y + E + A Sbjct: 65 IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D F L + D G A+L I EGC+ C+FC++P RG + Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254 SR + +V+ EA +L+ GV E+ ++ Q+ +A+ G L + + D +Y L Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 SE+ RL Y +P + A G L +PYL +P Q S RILK M R + Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + + R +++ P+I + S FIVGFPGETD +F + +D +D+ + +F YSP G Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAG 340 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432 + + + V E VK ERL K E +A +G + + L++ E V RS Sbjct: 341 ANALPDPVPEEVKQERLARFMAKQAEISALRLEAKIGSVQQCLVDL--IEDDIAVARSRA 398 Query: 433 --PWLQSVVLNSKNHN----IGDIIKVRITDVKISTLYGE 466 P + +V +GD++ V ITD L+G+ Sbjct: 399 DAPEIDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 438 >gi|121729038|ref|ZP_01682039.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147675671|ref|YP_001218113.1| hypothetical protein VC0395_A2197 [Vibrio cholerae O395] gi|262170131|ref|ZP_06037820.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae RC27] gi|238055296|sp|A5F514|RIMO_VIBC3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|121628686|gb|EAX61157.1| conserved hypothetical protein [Vibrio cholerae V52] gi|146317554|gb|ABQ22093.1| conserved hypothetical protein [Vibrio cholerae O395] gi|227014508|gb|ACP10718.1| conserved hypothetical protein [Vibrio cholerae O395] gi|262021539|gb|EEY40251.1| MiaB-like tRNA modifying enzyme YliG [Vibrio cholerae RC27] Length = 470 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 132/456 (28%), Positives = 224/456 (49%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GYE VNS D+D++++NTC + A ++ +G Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI + P V + GP Y + E + + Sbjct: 96 ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F L + D G A+L I EGC+ CTFC++P RG +SR + ++ Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259 + EA +L + GV E+ ++ Q+ +A+ G+D + + L L ++ Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S R+LK M R A + I Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D + + + FKYSP G + + Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 +Q+ E+VK ER + +Q+++ ++ +G ++VLI++ E G+ +P Sbjct: 374 DQIPEDVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDDEGAIGRTYADAPE 430 Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + +V LN + N G+++ V I L+G ++ Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466 >gi|258625718|ref|ZP_05720597.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|262170444|ref|ZP_06038122.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio mimicus MB-451] gi|258581956|gb|EEW06826.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|261891520|gb|EEY37506.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio mimicus MB-451] Length = 470 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 132/456 (28%), Positives = 224/456 (49%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GYE VNS D+D++++NTC + A ++ +G Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI + P V + GP Y + E + + Sbjct: 96 ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F L + D G A+L I EGC+ CTFC++P RG +SR + ++ Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259 + EA +L + GV E+ ++ Q+ +A+ G+D + + L L ++ Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFANGSPVRHNIKALSEELGKMGI 256 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S R+LK M R A + I Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D + + + FKYSP G + + Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 +Q+ E VK ER + +Q+++ ++ +G ++VLI++ +E G+ +P Sbjct: 374 DQIPEEVKQDRFERFMLVQQEISAAKLQKR---IGSTMQVLIDEVDEEGAIGRTYADAPE 430 Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + +V LN + N G+++ V I L+G ++ Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWGSVL 466 >gi|150401611|ref|YP_001325377.1| MiaB-like tRNA modifying enzyme [Methanococcus aeolicus Nankai-3] gi|150014314|gb|ABR56765.1| MiaB-like tRNA modifying enzyme [Methanococcus aeolicus Nankai-3] Length = 449 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 127/467 (27%), Positives = 240/467 (51%), Gaps = 49/467 (10%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F++ YGC +N D+ + + + + VN++DDAD++V+NTC +R + K+ S + Sbjct: 7 KIFIEGYGCTLNTADTNIINNSIKKFKNFIIVNNLDDADIVVINTCVVRLETEHKMISRI 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I++L + +V+AGC+ +A ++ + +P ++++ P+ + + +++ Sbjct: 67 NYIKSL---------NKYIVIAGCMPKALKKKAEKINP--DILIMPKEAHLIGDII--YN 113 Query: 145 FGKRVVDTDYSVEDKFE----------RLSIVDGGYN---------RKRGVTAFLTIQEG 185 + K + + + ++K E + G YN + + L I EG Sbjct: 114 YFKNNIGNENNADNKIEDSMKCGELPHNQASSSGNYNDIDNKLTQLKPNNLIMPLPISEG 173 Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245 C CT+C+V RG S + +++++A++ +DNGV ++ + Q+ + G D + Sbjct: 174 CTGKCTYCIVKIARGRLASYNPDKIINKAKEFVDNGVKQMLITSQDTACY---GFD-KNT 229 Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 T LL + +IKG +R H +++ D LI + D D + + HLP+QSG D + Sbjct: 230 TLPTLLNEICQIKGDFNIRIGMMHAKNVPMIIDELIDRYKD-DKITKFFHLPIQSGDDDV 288 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L++M R +T EY I + D+ ++D IVGFP ET+D+F T++L+ K+ Sbjct: 289 LRAMKREYTVDEYMDIAMEFKRKIKDLNFNTDVIVGFPTETEDNFNNTIELLKKLKPDAI 348 Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 KY+ R GT ++ L+QVD ++ ER+ L K +E + ++ VG+I+ LI Sbjct: 349 HGAKYTQRKGTE-ADRLKQVDTKIRKERMKILDKLRKEFSLENHEKYVGKIMPCLIV--- 404 Query: 423 KEKGKLVGRSPWLQSVVL-NSKNHNIGDIIKVRITDVKISTLYGELV 468 GK G + ++V N ++ IG+ K++I + LYGE++ Sbjct: 405 ---GKNEGITHNCKTVKFENCEDVKIGEFRKIKIKEALTFGLYGEII 448 >gi|197103594|ref|YP_002128971.1| 2-methylthioadenine synthetase [Phenylobacterium zucineum HLK1] gi|196477014|gb|ACG76542.1| 2-methylthioadenine synthetase [Phenylobacterium zucineum HLK1] Length = 465 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 116/357 (32%), Positives = 179/357 (50%), Gaps = 22/357 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S + G +D IV NTC + +A + + + R Sbjct: 53 TFGCRLNAYESEVIRKRAAEDGL--------SDAIVFNTCAVTGEAVRQARQAIRKAR-- 102 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +E V+V GC AQ + + V++V+G + A G+ V Sbjct: 103 -----RERPGAKVIVTGCAAQIDPDAFAAMDE-VDLVLGNAEKSQAGSYAPTAEAGRVRV 156 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + SV + L +DG +R R A++ +Q GCD CTFC++PY RG S +V Sbjct: 157 NDIMSVRETAGHL--IDGLKDRAR---AYVEVQNGCDHRCTFCIIPYGRGNSRSAPAGEV 211 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++ R+L G E+ L G +V +W G L G + L GL RLR ++ Sbjct: 212 VEQVRRLAGEGYQEVVLTGVDVTSW-GADLPGAPTLGQLVGRILKLAPGLPRLRLSSIDA 270 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++ L++ + LMPYLHL +Q+G D ILK M RRH+ + +++ +R+VRPD+A Sbjct: 271 AEIDADLLRLLAEEPRLMPYLHLSLQAGDDMILKRMKRRHSRADALRLVADVRAVRPDVA 330 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +D I GFP ETD+ F T+ LV++ G A F +SPR GTP + M + E VK Sbjct: 331 FGADLIAGFPTETDEMFENTLRLVEEAGLAFLHVFPFSPRPGTPAARMPQLPREVVK 387 >gi|284048363|ref|YP_003398702.1| MiaB-like tRNA modifying enzyme YliG [Acidaminococcus fermentans DSM 20731] gi|283952584|gb|ADB47387.1| MiaB-like tRNA modifying enzyme YliG [Acidaminococcus fermentans DSM 20731] Length = 442 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 137/458 (29%), Positives = 225/458 (49%), Gaps = 40/458 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S GC N+ DS M + + + N AD+I++NTC E A + + + ++ Sbjct: 5 VVSLGCPKNLVDSEVMMGLIRERQWTITNDPTHADVIIVNTCGFIESAKTESINTILQMA 64 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 K K+ ++V GC+ Q +E+ P V+ ++G + Y ++ +++R G+R Sbjct: 65 EYK----KDDPHRKLIVTGCLGQRYADELFADLPEVDAIIGTECYDQIGTVIDRVEKGER 120 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGV------TAFLTIQEGCDKFCTFCVVPYTRGIE 202 F L + R V TA+L I EGC+ C++C +P RG Sbjct: 121 -----------FTLLKPPQKYTQKARRVLTTPQYTAYLKIAEGCNNRCSYCAIPKIRGPY 169 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 SR +V+ EAR L+ GV E+ L+ Q+ + G+D K +DLL L+ I L Sbjct: 170 RSRPYEEVLQEARDLVSQGVRELILVAQDTTQY---GIDLYHKLRLADLLRDLNTIPDLK 226 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R +P +D LI+ D + Y+ LP+Q S+ +L +M+RR T + +++ + Sbjct: 227 WIRILYCYPDSFTDELIETMAQCDKVCHYVDLPLQHASNSLLHTMHRRDTREQVEELLAK 286 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R PDI + + FIVGFPGETD F+ +D V K + A F YS GT M Q Sbjct: 287 LRKRMPDICLRTTFIVGFPGETDGQFQELLDFVRKERFQCAGVFPYSQEDGTEAGAMPNQ 346 Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQS 437 + + VK +R L+ LQ ++ E+ G+++EVLIE +E L +GRS + ++ Sbjct: 347 IPDEVKQDRYHALMSLQAEISEE---IQQEREGKVLEVLIEGKDEEDPNLALGRS-YAEA 402 Query: 438 VVLNSK-------NHNIGDIIKVRITDVKISTLYGELV 468 ++ K + GD +KVRI+ G++V Sbjct: 403 PDIDGKIYVEEAADLKAGDFVKVRISQGFTYEAVGQIV 440 >gi|156741270|ref|YP_001431399.1| MiaB-like tRNA modifying protein YliG [Roseiflexus castenholzii DSM 13941] gi|238066619|sp|A7NIS8|RIMO_ROSCS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|156232598|gb|ABU57381.1| MiaB-like tRNA modifying enzyme YliG [Roseiflexus castenholzii DSM 13941] Length = 482 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 134/476 (28%), Positives = 231/476 (48%), Gaps = 46/476 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + + + GC N DS M + +QG+ S DDAD++++NTC A E+ + L Sbjct: 3 KVHIITLGCPKNQVDSEGMSGILAAQGHTLAASADDADVVIVNTCSFIAAAREETLAVLR 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---- 141 + K + +V AGC+A++ I+ +P V+ +G + + R+ E++E Sbjct: 63 DVAACKTPEQR------LVAAGCMAESH-RAIVAATPGVDATLGTREWTRIAEVVETFQP 115 Query: 142 -------RARFGKRVVD-TDYSVEDKFERLSIVDGGY---------NRKRGVTAFLTIQE 184 A + ++ T V V G Y R G +A+L I + Sbjct: 116 AATMAPLNAASAREIIPLTSAGVPSPAPHDLSVPGAYADWRTAPIRRRAVGPSAYLKISD 175 Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DG 242 GC+ C FC +P +G S+++ ++ EA++L GV EI L+ Q++ + R GL DG Sbjct: 176 GCNLRCAFCTIPSFKGDMRSKAIGAILGEAQELAAAGVKEIVLVAQHLTDYGRDLGLKDG 235 Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 ++ L E VRL Y ++P + + LI + YL +P+Q Sbjct: 236 LAILLDEICAVLPE-NVWVRLMY--AYPHGIGERLIATMARHPQICHYLDMPLQHAHPET 292 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L+ M R R++ID +R+ PDIAI S FIVGFPGET+ +FRA + ++ + + + Sbjct: 293 LRRMRRPPDTDRTRRLIDDLRAAIPDIAIRSTFIVGFPGETNTEFRALLAFLEDVQFDRV 352 Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE 419 F+YS GTP + + +Q+ + R ++ LQ+++ ++ N +G+++ VL+E Sbjct: 353 GVFRYSREPGTPAAALPDQLAPRIIERRWHEIMRLQQRISRER---NRRWLGRVVRVLVE 409 Query: 420 KHGK-EKGKL--VGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 G+ + G++ VGRS P + VL G + VR+T L+G++V Sbjct: 410 GQGQTDDGRMLSVGRSFRDAPEVDGQVLFWGAATPGTFVDVRVTQALDYDLWGDVV 465 >gi|146291706|ref|YP_001182130.1| ribosomal protein S12 methylthiotransferase [Shewanella putrefaciens CN-32] gi|238066624|sp|A4Y2Z8|RIMO_SHEPC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|145563396|gb|ABP74331.1| MiaB-like tRNA modifying enzyme YliG [Shewanella putrefaciens CN-32] Length = 472 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 139/454 (30%), Positives = 223/454 (49%), Gaps = 42/454 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ GYE NS D+ADL+++NTC + A E+ L +R Sbjct: 39 SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEES---LDAVREA 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E +I P V + GP +Y + K V Sbjct: 96 ----LEENGK--VIVTGCLGAKEN-QIREVYPDVLEITGPHSYEAV-----LKHVHKYVP 143 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 ++ + F L I G A+L I EGCD CTFC++P RG SR + Sbjct: 144 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPSLRGDLNSRPAGSI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSEIKGLV 261 +DEA++L+++GV EI ++ Q+ +A+ GK G K + L L ++ V Sbjct: 200 LDEAKRLVESGVQEILVVSQDTSAY-GKDKSGRTDFWDGMPVKQDITSLARQLGKMGAWV 258 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RL Y +P + A G +++PYL +P+Q S RILK M R + I R Sbjct: 259 RLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQR 315 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R + PD+ I S FIVGFPGET++DF+ +D + + + FKYS G + + E Sbjct: 316 WREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCFKYSEVDGAVANTIAEL 375 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ 436 + E+VK + R + LQ ++ ++++ VG+ +++LI+ +E G+ +P + Sbjct: 376 ISEDVKEDRYHRFMELQAEISAERLA---RFVGRTLDILIDDVDEEGAIGRSFADAPEID 432 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +V + + G +++ RIT L+ E+V Sbjct: 433 GMVFINGETELEPGMLVRARITHSDEHDLWAEVV 466 >gi|254173086|ref|ZP_04879760.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp. AM4] gi|214033242|gb|EEB74070.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp. AM4] Length = 424 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 133/443 (30%), Positives = 223/443 (50%), Gaps = 27/443 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R V+SYGC N D ME + G+E V + ++AD +V+NTC +++ + Sbjct: 3 RVHVESYGCSRNKADGEIMEALLLKAGHELVETPENADYVVVNTCAVKDPTE---FKMAK 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIR L +S K V+ GC+ + I P V+ ++G ++ R+ E +E A Sbjct: 60 RIRELLDSGKK------VIATGCLVHVNPDAI---DPRVSGILGVKSIDRIAEAIEIAER 110 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G ++V + E ++L + K GV + I EGC CT+C + RG+ S Sbjct: 111 GGKLVSVEGWRERNPDKLELPRLW---KPGVAFVVPISEGCLNACTYCATRFARGVLKSY 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 VV ++ + G EI L ++ + G D ++LL ++ I+G R+R Sbjct: 168 KPELVVKWVKEALARGYREIILSSEDTGCY---GFD-IGTNLAELLDEITAIEGEFRVRV 223 Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +P + D LI+A+ D V +LHLPVQSG + IL+ M R +T E+++I+ Sbjct: 224 GMMNPNHVLKFLDELIEAYQDEKVYR-FLHLPVQSGDNEILRRMGRNYTVEEFKEIVRAF 282 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P++ +++D IVGFPGET++ FR T++LV +I + +YS R GT + +Q+ Sbjct: 283 RKKIPELNLNTDIIVGFPGETEEAFRNTVELVKRIKPDKINVSRYSARPGTIAARW-KQL 341 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 + ER L + + N A VG+ +EVL+ GK KG + GR+ + ++L+S Sbjct: 342 PGWLVKERSRELHRLRLQIAYEINKAYVGRTVEVLVHGPGK-KGGVEGRAFNYKDIILDS 400 Query: 443 KNHNIGDIIKVRITDVKISTLYG 465 G +++ ++ + L G Sbjct: 401 --GEAGSLVRAKVERATATYLIG 421 >gi|325981563|ref|YP_004293965.1| MiaB-like tRNA modifying enzyme YliG [Nitrosomonas sp. AL212] gi|325531082|gb|ADZ25803.1| MiaB-like tRNA modifying enzyme YliG [Nitrosomonas sp. AL212] Length = 459 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 131/465 (28%), Positives = 227/465 (48%), Gaps = 51/465 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ S GC + DS ++ ++GYE S DADL+V+NTC + A E+ + Sbjct: 9 QKVGFVSLGCPKALVDSEQILTQLRAEGYEISASYQDADLVVVNTCGFIDSAVEESLDAI 68 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCV-AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 G + E G V+V GC+ A+ +G+ + + P V V GP + LPE++ Sbjct: 69 GEA-------LAENGK--VIVTGCLGAKEDGDVVKKAHPHVLAVTGP---HALPEVMSAI 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 Y+ + + + Y A++ I EGC+ CTFC++P RG + Sbjct: 117 HTHLPQPHDPYTSLIPPQGIRLTPKHY-------AYVKISEGCNHRCTFCIIPSMRGGLV 169 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + QV+ EA L++ GV E+ ++ Q+ +A W+G+ + K ++L + Sbjct: 170 SRPIHQVMQEAEHLVNAGVKELLIISQDTSAYGVDVKYRTGFWQGRPV---KTRLTELAH 226 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +L + VRL Y +P + + A G + +PYL +P Q + RILK M R +A Sbjct: 227 ALGSLGVWVRLHYVYPYPHVDAIIPLMAEGKI---LPYLDVPFQHANPRILKMMKRPASA 283 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 I + R++ PDI + S FIVGFPGET+ +F + + + + F YSP G Sbjct: 284 ENNLARIQQWRNICPDITLRSTFIVGFPGETEAEFEDLLAFLQEAQLDRVGCFTYSPVAG 343 Query: 373 TPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 + + + + E +K E R + Q+++ Q+++ A VG + V+I++ +++ Sbjct: 344 ATANQLSDHIPEAIKQERRARFMQQQEEISRQRLA---AKVGHTMTVMIDE--LTGSQVI 398 Query: 430 GRS----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 RS P + VV N+++ G++I V+IT L+ ++ Sbjct: 399 ARSSADAPDIDGVVYVENAEHLQPGELIDVQITGSNAHDLFAVML 443 >gi|166712649|ref|ZP_02243856.1| hypothetical protein Xoryp_14640 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 454 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 140/460 (30%), Positives = 215/460 (46%), Gaps = 44/460 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V S D AD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + V+V GC+ + E+I P V V GPQ Y + E + A Sbjct: 65 IGEAMSANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D F L + D G A+L I EGC+ C+FC++P RG + Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254 SR + +V+ EA +L+ GV E+ ++ Q+ +A+ G L + + D +Y L Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 SE+ RL Y +P + A G L +PYL +P Q S RILK M R + Sbjct: 224 SELGVWTRLHYVYPYPHVDDVLPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 Q + R +++ P+I + S FIVGFPGETD +F + +D +D+ + +F YSP G Sbjct: 281 TLQRVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAS 340 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432 + + + V E VK ERL K E +A +G + + L++ E V RS Sbjct: 341 ANALPDPVPEEVKQERLARFMAKQAEISALRLEAKIGSVHQCLVDL--IEDDIAVARSRA 398 Query: 433 --PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466 P + +V +GD++ V ITD L+G+ Sbjct: 399 DAPEIDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 438 >gi|120600362|ref|YP_964936.1| ribosomal protein S12 methylthiotransferase [Shewanella sp. W3-18-1] gi|238066618|sp|A1RNY7|RIMO_SHESW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|120560455|gb|ABM26382.1| MiaB-like tRNA modifying enzyme YliG [Shewanella sp. W3-18-1] Length = 472 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 140/453 (30%), Positives = 224/453 (49%), Gaps = 40/453 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ GYE NS D+ADL+++NTC + A E+ L +R Sbjct: 39 SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEES---LDAVREA 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E +I P V + GP +Y + K V Sbjct: 96 ----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV-----LKHVHKYVP 143 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 ++ + F L I G A+L I EGCD CTFC++P RG SR + Sbjct: 144 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPSLRGDLDSRPAGSI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-RGKG-----LDGE--KCTFSDLLYSLSEIKGLVR 262 +DEA++L+++GV EI ++ Q+ +A+ + KG DG K + L L ++ VR Sbjct: 200 LDEAKRLVESGVQEILVVSQDTSAYGKDKGGRTDFWDGMPVKQDITSLARQLGKMGAWVR 259 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G +++PYL +P+Q S RILK M R + I R Sbjct: 260 LHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQRW 316 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + PD+ I S FIVGFPGET++DF+ +D + + + FKYS G + + E + Sbjct: 317 REICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCFKYSEVDGAVANTIAELI 376 Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQS 437 E VK + R + LQ ++ ++++ VG+ +++LI+ +E G+ +P + Sbjct: 377 SEEVKEDRYHRFMELQAEISAERLA---RFVGRTLDILIDDVDEEGAIGRSFADAPEIDG 433 Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +V + + G +++ RIT L+ E+V Sbjct: 434 MVFINGETELEPGMLVRARITHSDEHDLWAEVV 466 >gi|227538337|ref|ZP_03968386.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC 33300] gi|227241852|gb|EEI91867.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC 33300] Length = 447 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 123/440 (27%), Positives = 226/440 (51%), Gaps = 16/440 (3%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 + I+ ++ + GC++N ++ + +F GYE AD+ V+NTC + + A +K Sbjct: 5 KIIMNKKVAFYTLGCKLNFSETSSIGRIFKDAGYETTAFNSQADVYVINTCSVTDHADKK 64 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 R + +K + + + GC AQ + +EI P V++V+G + + E Sbjct: 65 C-------RKVVKEALKYSPNAYITIVGCYAQLKPQEIAN-IPGVDMVLGAAEKFNIIEH 116 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + ++ + + +++ + +S G +R R FL +Q+GCD CTFC +P R Sbjct: 117 INDLTKQEKTIVHNAPIDETNQFVSAYSIG-DRTR---TFLKVQDGCDYSCTFCTIPLAR 172 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIK 258 G S + +V +A ++ +GV EI L G N+ + + DGE+ F DL+ +L E++ Sbjct: 173 GASRSGKIEDIVRQAEEIAASGVKEIVLTGVNIGDFGVR--DGERQDRFLDLVKALDEVE 230 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R+R ++ P +++ +I+ +P+ H+P+QSG+++IL M RR+ Y + Sbjct: 231 GIDRIRISSIEPNLLANDIIEFVAQSKRFVPHFHMPLQSGNNKILGMMRRRYKRELYAER 290 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +++I+S+ PD I D IVGFPGET +DF T + ++++ + F YS R T + M Sbjct: 291 VEKIKSLMPDCCIGVDVIVGFPGETREDFLDTYNFLNEMDISYLHVFTYSERENTIAAQM 350 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 V +++R L +++ +F + + +I +VL E KE G + G S V Sbjct: 351 EGAVPGAQRSDRSKMLHILSEKKRRAFYENQLSKIGDVLFESDEKE-GFMHGFSKNYVKV 409 Query: 439 VLNSKNHNIGDIIKVRITDV 458 + ++I+VR T V Sbjct: 410 RTAYDPLLVNEVIQVRFTSV 429 >gi|319424938|gb|ADV53012.1| MiaB-like tRNA modifying enzyme YliG [Shewanella putrefaciens 200] Length = 472 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 140/453 (30%), Positives = 224/453 (49%), Gaps = 40/453 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ GYE NS D+ADL+++NTC + A E+ L +R Sbjct: 39 SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEES---LDAVREA 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E +I P V + GP +Y + K V Sbjct: 96 ----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV-----LKHVHKYVP 143 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 ++ + F L I G A+L I EGCD CTFC++P RG SR + Sbjct: 144 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPSLRGDLDSRPAGSI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-RGKG-----LDGE--KCTFSDLLYSLSEIKGLVR 262 +DEA++L+++GV EI ++ Q+ +A+ + KG DG K + L L ++ VR Sbjct: 200 LDEAKRLVESGVQEILVVSQDTSAYGKDKGGRTDFWDGMPVKQDITSLARQLGKMGAWVR 259 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G +++PYL +P+Q S RILK M R + I R Sbjct: 260 LHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQRW 316 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + PD+ I S FIVGFPGET++DF+ +D + + + FKYS G + + E + Sbjct: 317 REICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCFKYSEVDGAVANTIAELI 376 Query: 383 DENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQS 437 E VK + R + LQ ++ ++++ VG+ +++LI+ +E G+ +P + Sbjct: 377 SEEVKEDRYHRFMELQAEISAERLA---RFVGRTLDILIDDVDEEGAIGRSFADAPEIDG 433 Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +V + + G +++ RIT L+ E+V Sbjct: 434 MVFINGETELEPGMLVRARITHSDEHDLWAEVV 466 >gi|46199117|ref|YP_004784.1| Fe-S oxidoreductase [Thermus thermophilus HB27] gi|81405881|sp|Q72JG1|RIMO_THET2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|46196741|gb|AAS81157.1| Fe-S oxidoreductase [Thermus thermophilus HB27] Length = 434 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 140/453 (30%), Positives = 224/453 (49%), Gaps = 47/453 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ + GYE S ++A+L+++NTC +A E+ +G Sbjct: 8 SLGCPKALVDSEQILSRLKALGYETSPSYEEAELVIVNTCGFINEAVEESLEAIGEA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G VVV GC+ A E+I R P V V GP R+ E ++ R Sbjct: 65 ----LKENGK--VVVTGCLG-ARPEKIRERHPQVLAVTGPGEVERVLEAVQEVLPAPR-- 115 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L ++ A++ + EGCD C+FC++P RG SR + V Sbjct: 116 -------DPF--LDLIPPQVKLTPRHYAYVKLSEGCDHRCSFCIIPKLRGRLRSRDAADV 166 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEK---CTFSDLLYSLSEIKGLVR 262 + EA +L+ G E+ L+ Q+++A+ + L G++ DLL ++E+ +R Sbjct: 167 LAEAARLVATGTKELLLVAQDLSAYGVDLGHRESLWGDRPVRAELKDLLTHMAELGVWIR 226 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDR 321 L Y +P + A G + +PYL +P+Q S RIL+ M RR YE + + + Sbjct: 227 LHYVYPYPHVKDLLPLMAEGKV---LPYLDVPLQHASPRILRLM-RRPGGYESHLKTLKA 282 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R V P++A+ S FIVGFPGET++DF+ +D +++ + F YSP G + + + Sbjct: 283 WREVVPELALRSTFIVGFPGETEEDFQILLDFLEEAELDRVGVFAYSPVEGAEANRLPDP 342 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434 V E VK E RLL +Q ++ ++ N VG+ +EVL+++ E G VGR+ P Sbjct: 343 VPEEVKEERKARLLEVQARVSLRK---NQRFVGKTLEVLVDEL-PEPGLAVGRTYRDAPG 398 Query: 435 LQSVVLNSKNHN--IGDIIKVRITDVKISTLYG 465 + VV + +G+ I VRI L+G Sbjct: 399 VDGVVYVETDGTVRVGERIPVRILRADTYDLHG 431 >gi|218283870|ref|ZP_03489756.1| hypothetical protein EUBIFOR_02352 [Eubacterium biforme DSM 3989] gi|218215533|gb|EEC89071.1| hypothetical protein EUBIFOR_02352 [Eubacterium biforme DSM 3989] Length = 432 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 128/447 (28%), Positives = 235/447 (52%), Gaps = 32/447 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS ++ M G+E V + DA I++NTC E A E+ + + ++ Sbjct: 7 SLGCCKNLVDSEQIMGMIKRGGHEIVANPKDAQAIIVNTCGFIESAKEESINTIFKMAQY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K +++ ++V GC+AQ + + P ++ V+ + Y L L++ ++ Sbjct: 67 KERNLEK-----LIVCGCLAQRYTDTLREEIPEIDAVIPIREYDTLASQLQK------IL 115 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +D ++ DK ER ++ G A++ I +GC C +C +P RG + SR++ + Sbjct: 116 GSD-TLLDKAER--VISGN-----PWQAYVKISDGCSNRCAYCAIPLIRGDQKSRTIEDI 167 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++E L GV E+TL+ Q+ + GLD GE +LL +S+++ L +R Sbjct: 168 MEEVNHLSSIGVKELTLIAQDTTKY---GLDNYGE-LMLPELLRQVSKVEELHWIRVLYM 223 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ D +++A + + ++PY +P+Q ++R+LK MNRR + +++D+I ++ P+ Sbjct: 224 YPDEIVDDVLQAMSESEKIVPYFDIPMQHANNRLLKLMNRRGPKEDVLKVVDKIHTMFPN 283 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + + IVGFP ET+++F +D + +I + + +F YS TP +M Q+DE V+ Sbjct: 284 ATLRTTMIVGFPTETEEEFEELVDFIKEIKWDRMGAFTYSKEEDTPAYDMDGQIDEEVQN 343 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHG---KEKGKLVGRSPWL---QSVVLN 441 +RL L E N +G++IEVL+ EK G + +G+ +P Q + + Sbjct: 344 DRLARLMAVQEEISKEKNQEKIGKVIEVLVEEKEGLVDRYRGRSAADAPDEVDGQVIFTS 403 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +G +KV+ITD K +YG V Sbjct: 404 EEPLELGTFVKVKITDAKSYDVYGTCV 430 >gi|325103664|ref|YP_004273318.1| MiaB-like tRNA modifying enzyme [Pedobacter saltans DSM 12145] gi|324972512|gb|ADY51496.1| MiaB-like tRNA modifying enzyme [Pedobacter saltans DSM 12145] Length = 439 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 121/399 (30%), Positives = 206/399 (51%), Gaps = 23/399 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F + G++ V D AD+ V+NTC + E A +K R + Sbjct: 9 TLGCKLNYSETSTIGRQFQNAGFKMVEFTDKADVYVINTCSVTENADKKC-------RKV 61 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFGKR 148 +K + + + GC AQ + EI S I V+VV+G ++L E ++ + Sbjct: 62 VKEALKHSPNAYIAIVGCYAQLKPTEI---SEIEGVDVVLGAAEKFQLLEHIQDLTKKPK 118 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + +++ E ++ G +R R FL +Q+GCD CTFC +P RG S ++ Sbjct: 119 AEIFNKPIKETNEFVASYSFG-DRTR---TFLKVQDGCDYSCTFCTIPLARGESRSDTID 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +V +A+++ +GV EI L G N+ + GK D F DL+ +L E++G+ R+R Sbjct: 175 SIVAQAKEIAKSGVKEIVLTGVNIGDFGIRNGKRED----KFFDLVKALDEVEGIDRIRI 230 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ P +S +I+ +P+ H+P+QSGS++IL M RR+ Y + I+ V Sbjct: 231 SSIEPNLLSTEIIEFVSKSKRFVPHFHIPLQSGSNKILGLMRRRYRRELYVDRVREIKRV 290 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD I D IVGFPGET +DF T + ++ + + F YS R TP + M V + Sbjct: 291 MPDCCIGVDVIVGFPGETREDFIDTYNFLNDLDISYLHVFTYSERENTPAAEMEGSVPGS 350 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 +A+R L +++ +F + +G++ E+L E KE Sbjct: 351 QRADRSKMLHILSDKKRRAFYETQIGKVGEILFEGDLKE 389 >gi|320101289|ref|YP_004176881.1| MiaB family RNA modification protein [Desulfurococcus mucosus DSM 2162] gi|319753641|gb|ADV65399.1| RNA modification enzyme, MiaB family [Desulfurococcus mucosus DSM 2162] Length = 428 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 119/401 (29%), Positives = 212/401 (52%), Gaps = 26/401 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGC +N D M + +G+ VN DAD I++NTC +R + Y + Sbjct: 2 KVYIETYGCALNRSDEALMRESITGKGHVLVNDPGDADAIIINTCTVR---LDTEYHMVK 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIR L ++ G L +VAGC+A+A+ + R +P +++ PQ R+ E+LE Sbjct: 59 RIRELYKLSMEAGKKL--IVAGCMARAQPYTVSRIAPGASLL-SPQNSPRVVEVLEAP-- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G+ V+ D+ G Y R A + +QEGC C+FC+ + R + +S Sbjct: 114 GRVVMINGVRARDRI-------GVYVENR--VAPIPVQEGCLSNCSFCISRHARRVLVSH 164 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSE-IKGLVRL 263 S+ VV K + +G E+ L G ++ + G+D + DL+ + E ++G L Sbjct: 165 SIDAVVKAVGKAVRDGAVEVQLTGMDLGTY---GMDLYRARRLPDLIRRIVENVRGNYML 221 Query: 264 RY---TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R H R + + L+K D + + +LH+P+QSGS+R+LK M R +T EY +++D Sbjct: 222 RVGMINPEHLRHILEDLVKVVADAENVYKFLHIPLQSGSNRVLKLMRRNYTVEEYLEMVD 281 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R++S P+++I++D IVG P E+++DF T+ ++++ G+ + YS R T + M + Sbjct: 282 RVKSSIPEVSIATDIIVGHPMESEEDFAETLRVIEEAGFERVHLAGYSMRPLTCSAAM-Q 340 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 Q+ +V+ ER+L + + + + VG + I +H Sbjct: 341 QLPTSVRKERVLKALRVVEKVGMRVRARYVGTSVRCFITEH 381 >gi|237744247|ref|ZP_04574728.1| Fe-S oxidoreductase [Fusobacterium sp. 7_1] gi|229431476|gb|EEO41688.1| Fe-S oxidoreductase [Fusobacterium sp. 7_1] Length = 435 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 126/449 (28%), Positives = 230/449 (51%), Gaps = 40/449 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ +++ +GYE V D +D+ ++N+C + A K + L R + + Sbjct: 11 TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138 + V+V GC AQ EIL +S IVN V + Sbjct: 71 -------NPNAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ER + G + +Y E +F L + A++ IQ+GC+ FC++C +P+ Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG SR ++ E KL+++G E+ L+G +++A+ G+ + EK +F LL + +I+ Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GEDFE-EKDSFESLLEDILKIR 226 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L R+R + +P ++D I+ + + LMP+LH+ +QS D +LK+M R + + R+ Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSLLIRES 285 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + +++S ++ ++D IVGFP E + F+ T D++ +I ++ F+YS R GT SNM Sbjct: 286 LLKLKSKIKNMEFTADVIVGFPKEDETMFQNTYDVIREIKFSGLHIFQYSDREGTIASNM 345 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQS 437 +VD K +R L +E + + + +EVL+E+ + G+ G S +L+ Sbjct: 346 DGKVDSKTKKQRADRLDSLKQEMLIESRKKYLEKNLEVLVEEE--KDGEYFGYSQNYLRV 403 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466 + + I +I ++I V+ + L GE Sbjct: 404 KFKSDEKELINKLINIKIKCVENNVLIGE 432 >gi|254784823|ref|YP_003072251.1| ribosomal protein S12 methylthiotransferase [Teredinibacter turnerae T7901] gi|237686747|gb|ACR14011.1| ribosomal protein S12 methylthiotransferase [Teredinibacter turnerae T7901] Length = 439 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 141/467 (30%), Positives = 226/467 (48%), Gaps = 57/467 (12%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ S GC + DS R+ GY V S DDADL+V+NTC + A ++ + Sbjct: 3 QKVGFISLGCPKALVDSERILTQLKLDGYSVVPSYDDADLVVVNTCGFIDSAKQESLDAI 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERA 143 + + E G V+V GC+ + + EI+R S P V V GP Y + Sbjct: 63 -------SEAMSENGK--VIVTGCMGKGKDAEIIRESFPNVLSVTGPAAYEEV------- 106 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V + V D + +V G A+L I EGC+ C+FC++P RG Sbjct: 107 -MGA-VHEYIPPVRDHNPHVDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPDMRGDL 164 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR + V++EA +L++ G E+ ++ Q+ +A W+G+ + K +L Sbjct: 165 VSRPIGDVLNEAERLVNAGTRELLVISQDTSAYGVDLKYRTGFWQGRPV---KTRMQELC 221 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L E+ VRL Y +P + + A G ++PYL +P Q S +LK+M R Sbjct: 222 EALGEMGVWVRLHYVYPYPHVDNVIPLMAEGK---ILPYLDIPFQHASPTVLKAMQR--P 276 Query: 312 AYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 A++ + +DRI + R PD+ + S FIVGFPGETD DF +D ++ + F+YS Sbjct: 277 AHQ-EKTLDRIHAWRKMCPDLTLRSTFIVGFPGETDADFELLLDWLEDAQLDRVGCFQYS 335 Query: 369 PRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 P G + + V E VK ER + Q+++ ++ A +G+ I+VLI++ E Sbjct: 336 PVEGAAANALPNPVPEEVKQERWERFMAAQQRISAARLQ---AKIGKTIDVLIDR--SEG 390 Query: 426 GKLVGRS----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466 +GRS P + VV+ +S + G +IK R+T ++ E Sbjct: 391 VNALGRSFADAPEIDGVVIVEDSAHLPAGSLIKARVTAADEYDIWAE 437 >gi|154249651|ref|YP_001410476.1| MiaB-like tRNA modifying enzyme [Fervidobacterium nodosum Rt17-B1] gi|154153587|gb|ABS60819.1| MiaB-like tRNA modifying enzyme [Fervidobacterium nodosum Rt17-B1] Length = 421 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 125/425 (29%), Positives = 216/425 (50%), Gaps = 23/425 (5%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN Y+S M +M + Y + D +AD+ ++N+C + +A KV + IR Sbjct: 1 MNQYESELMIEMLENADYIVIPETDINADIYIINSCAVTGEAERKVRQTIRHIR------ 54 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154 KE D +++ GC Q E + V++V+G + + L ++ DY Sbjct: 55 -KENPDSKIILTGCYTQIPRESSEYETLGVDLVLGNSEKKSIVKFLNENGIYSKI---DY 110 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDE 213 ED + D R R AF+ +++GC+ CT+CV+ RG I S+ + V+ E Sbjct: 111 WREDDISYEMVKDSIAERSR---AFIKVEDGCNNGCTYCVIRSLRGTRIRSKPIEVVIKE 167 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 A +LI E+ + G N+ + GK + + LL +S+I G R+R ++ +P D+ Sbjct: 168 AEQLITKKHKELVITGLNLGKY-GKDIG---TNLAKLLNEVSKINGDFRIRLSSINPEDL 223 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 D LI + D + +LH+P+QSGS +LK M R +TA +++++R+ P +I++ Sbjct: 224 DDELINIILENDKICNHLHIPIQSGSTSVLKRMGRNYTADYLLGLVEKLRAADPLFSITT 283 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 D +VGFPGE++ +F+ T+DLV K+ +++ +F++S R GT + M +V NVK +R+ Sbjct: 284 DIMVGFPGESEQEFQETIDLVSKLEFSKVHAFRFSERPGTRAAQMDRKVPGNVKKDRVEM 343 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453 L + ++ VG+ VL+E G G +G + + + IGD +K Sbjct: 344 LISHSQNVANAYKRKLVGKTTTVLVE--GVMNGIYIGYDEYY--IPHETNGGIIGDFVKT 399 Query: 454 RITDV 458 I V Sbjct: 400 VILSV 404 >gi|256027911|ref|ZP_05441745.1| Fe-S oxidoreductase [Fusobacterium sp. D11] gi|289765860|ref|ZP_06525238.1| fe-s oxidoreductase [Fusobacterium sp. D11] gi|289717415|gb|EFD81427.1| fe-s oxidoreductase [Fusobacterium sp. D11] Length = 435 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 127/449 (28%), Positives = 230/449 (51%), Gaps = 40/449 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ +++ +GYE V D +D+ ++N+C + A K + L R + + Sbjct: 11 TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138 + V+V GC AQ EIL +S IVN V + Sbjct: 71 -------NPNAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ER + G + +Y E +F L + A++ IQ+GC+ FC++C +P+ Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG SR ++ E KL+++G E+ L+G +++A+ G+ + EK +F LL + +I+ Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GEDFE-EKDSFESLLEDILKIR 226 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L R+R + +P ++D I+ + + LMP+LH+ +QS D +LK+M R + + R+ Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSLLIRES 285 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + +++S ++ ++D IVGFP E + F+ T D++ +I ++ F+YS R GT SNM Sbjct: 286 LLKLKSKIKNMEFTADVIVGFPKEDETMFQNTYDVIREIEFSGLHIFQYSDREGTIASNM 345 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQS 437 +VD K +R L +E + + + +EVL+E+ + G+ G S +L+ Sbjct: 346 DGKVDAKTKKQRADRLDSLKQEMLIESRKKYLEKNLEVLVEEE--KDGEYFGYSQNYLRV 403 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466 + + I +I V+I V+ + L GE Sbjct: 404 KFKSDEKELINKLINVKIKCVENNVLIGE 432 >gi|260887121|ref|ZP_05898384.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC 35185] gi|330839106|ref|YP_004413686.1| Ribosomal protein S12 methylthiotransferase rimO [Selenomonas sputigena ATCC 35185] gi|260863183|gb|EEX77683.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC 35185] gi|329746870|gb|AEC00227.1| Ribosomal protein S12 methylthiotransferase rimO [Selenomonas sputigena ATCC 35185] Length = 442 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 133/451 (29%), Positives = 223/451 (49%), Gaps = 29/451 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M + G E +A++I++NTC + A E+ + + + Sbjct: 7 SLGCAKNLVDTEVMLGILQDNGIELTPDPAEAEIIIVNTCAFIQSAKEESITTVLNMAEY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K + G +++AGC+ + +E+L P + ++G + R+ E + G R+V Sbjct: 67 KET----GCCRSLIIAGCLGERYHQELLDDMPEADAIIGTGAWNRIMEAVRETLAGNRIV 122 Query: 151 ---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + + + K R+ + Y +A++ I EGCD C FC +P RG SRS+ Sbjct: 123 LAGENEIVYDAKTPRI-LTTPAY------SAYVKIAEGCDHRCAFCAIPLIRGRFRSRSM 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + E +L GV EI L+ Q+ + + GK + GE + + LL L +I+ + +R Sbjct: 176 DDIKREVTRLAAEGVREIILVAQD-STYYGKDIYGEP-SLARLLQELVKIEKVEWMRVLY 233 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P++ +D LI + Y+ LP+Q + ILKSM R T E ++ +IR+ P Sbjct: 234 CYPKNFTDELITTIAQEPKICKYVDLPLQHAHNSILKSMRRPDTQEEVVTLLKKIRARIP 293 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 ++A+ S FIVGFPGETD ++ + + + + F YS TP ++M+ QV E+V Sbjct: 294 NVAVRSTFIVGFPGETDAQYQTLRRFLIEQRFEKVGIFTYSQEEDTPAASMMRQVPEDVV 353 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRS----PWL--QS 437 ER L+ +Q K+ E+ N G+ ++VL+E +E+ L GRS P + Q Sbjct: 354 QERYHDLMSVQCKISEE---LNQGLEGKELDVLVEGRDEEQPNLAFGRSYREAPGVDGQI 410 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + GDI++VRI GELV Sbjct: 411 FIEGDAVSRPGDIVRVRIVQGFTYDAVGELV 441 >gi|291543502|emb|CBL16611.1| SSU ribosomal protein S12P methylthiotransferase [Ruminococcus sp. 18P13] Length = 447 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 127/450 (28%), Positives = 223/450 (49%), Gaps = 27/450 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS RM + +GYE V DAD++V+NTC + A E+ + + L Sbjct: 9 SLGCAKNLVDSERMLHLIRQRGYELVTEPGDADVVVVNTCGFIQSAKEEAIDTILELCQL 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K EG +++ GC+A+ +E P V+ V+G ++ ++++ +R+V Sbjct: 69 K----AEGSIRKIIMTGCLAERYRQEAADEFPEVDAVIGIGDQGQIIDVIDHVLANERMV 124 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 S +D + +R ++ A+L I EGC+ CT+C +P RG S Sbjct: 125 HF----------CSKLDVPMSGRRVLSTLPFFAYLKIAEGCNNCCTYCAIPMIRGGFRSV 174 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + V++EAR L ++GV E+T++ Q+ + G+ L GE +LL L I+G+ +R Sbjct: 175 PMEDVLEEARWLTEHGVTELTVIAQDTTRY-GEDLYGES-RLPELLEQLCRIQGIRWIRV 232 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P ++D L++ + L+ YL +P+Q + IL+ MNR+ A ++++IR + Sbjct: 233 LYCYPERITDKLLEVMAREEKLVKYLDIPIQHCNGDILRRMNRQGDAGTLAALLNKIRQM 292 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDI + + I GFPGET+ F + + + + F YS GT + +QV E+ Sbjct: 293 IPDITLRTTLITGFPGETEAQFTELAEFIQAQRFDRLGCFAYSQEEGTRAAEFPDQVPED 352 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK----GKLVGRSPWLQSVVL- 440 V+ R L ++ + N+A +GQ+ +IE + + G+ +P + V Sbjct: 353 VRQHRADILMEQQQLIVEEKNNARLGQVCTAVIEGYDRWAECWFGRTAADAPDIDGKVFI 412 Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGELVV 469 + +IGD + VR+ +V GE+V Sbjct: 413 RSETPLHIGDYVTVRLDEVLDYDFVGEVVT 442 >gi|159901008|ref|YP_001547255.1| MiaB-like tRNA modifying enzyme YliG [Herpetosiphon aurantiacus ATCC 23779] gi|238066313|sp|A9AZS3|RIMO_HERA2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|159894047|gb|ABX07127.1| MiaB-like tRNA modifying enzyme YliG [Herpetosiphon aurantiacus ATCC 23779] Length = 469 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 126/479 (26%), Positives = 236/479 (49%), Gaps = 47/479 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F + + GC N DS M + +G+ V+S D AD++++NTC A E+ L Sbjct: 2 KFHIITLGCPKNTVDSEGMHGILTREGHTAVDSSDGADVVIVNTCSFINAAREETVGVLQ 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL----- 140 + N K K ++ AGC+A++ G+ + R P ++ + + + R+ ++ Sbjct: 62 ELANNKAPGQK------LIAAGCMAESHGDVLRSRVPKLDATLSTKEWMRIGSVVAGGVA 115 Query: 141 --ERARFGKRVVD-TDYSVEDKFERLSIVD-------GGYN---------RKRGVTAFLT 181 + FG ++ ++ LS+ G Y KRG +A+L Sbjct: 116 PSKTTGFGIPLMGGAPSAMPSTGLNLSLTPAATGDSLGAYGDWRTTAITRNKRGPSAYLK 175 Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241 I +GC+ C FC +P +G S+++ ++ EAR+L++ GV EI L+ Q++ + G+ L Sbjct: 176 ISDGCNLRCAFCTIPSFKGDMRSKAVGSILGEARELVEAGVQEIILVAQHLTDY-GRDLG 234 Query: 242 GEKCTFSDLLYSLSEIKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300 ++ LL L+ + R +R ++P+ ++ L++ L L Y+ +P+Q Sbjct: 235 MKQNGLGVLLEELAAVVPADRWIRLMYAYPQSVTPDLVETMARLPQLCHYVDMPLQHAHP 294 Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 L+ M R + + I++ +R PD+++ + FIVG+PGET D+F+A ++ ++++ + Sbjct: 295 DTLRRMRRPPDTDKTKAIVNSLRQAMPDLSLRTTFIVGYPGETRDEFKALLEFLEEMQFD 354 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERL---LCLQKKL-REQQVSFNDACVGQIIEV 416 + F+YS GT + +QV E VK R + +Q+ + R + F VGQ ++V Sbjct: 355 RVGMFRYSLEPGTVAGELPDQVAERVKERRWNEAMAVQQVISRARTARF----VGQTMKV 410 Query: 417 LIEKHGKE---KGKLVGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 L+E G + + +VGRS P + +V ++G K+ I L+GE+V Sbjct: 411 LVEGTGTDDDGRAIVVGRSYRDAPEVDGLVFGYGAADVGQFAKIAINKTTDYDLWGEIV 469 >gi|16127914|ref|NP_422478.1| hypothetical protein CC_3684 [Caulobacter crescentus CB15] gi|221236734|ref|YP_002519171.1| tRNA 2-methylthioadenosine synthase-like protein [Caulobacter crescentus NA1000] gi|13425446|gb|AAK25646.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220965907|gb|ACL97263.1| tRNA 2-methylthioadenosine synthase-like protein [Caulobacter crescentus NA1000] Length = 443 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 131/436 (30%), Positives = 205/436 (47%), Gaps = 35/436 (8%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P V ++GC++N Y+S M + G +D +V NTC + +A + Sbjct: 30 PDGVDVVTFGCRLNAYESEAMRARASADGL--------SDAVVFNTCAVTNEAVRQARQA 81 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + + R +E ++V GC AQ + P V++V+G P L Sbjct: 82 IRKAR-------RERPGARIIVTGCAAQVD-PAAFAAMPEVDLVLG-NAEKAAPGALTDT 132 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 RV D S+++ L +DG +R R A++ +Q GCD CTFC++PY RG Sbjct: 133 STRVRVNDI-MSIKETAGHL--IDGLKDRAR---AYVEVQNGCDHRCTFCIIPYGRGNSR 186 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S +VV++ RKL G E+ L G +V +W G L G+ + L + L RL Sbjct: 187 SAPAGEVVEQVRKLAAEGYREVVLTGVDVTSW-GADLPGQPTLGQLVGRILRMVPDLPRL 245 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ ++ L K LMPYLHL +Q+G + ILK M RRH+ + +++ +R Sbjct: 246 RLSSIDAAEIDPDLFKLLETEPRLMPYLHLSLQAGDNLILKRMKRRHSREDALKLVAEVR 305 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 VRPD A +D I GFP ETD+ F T+ LV++ G A F YS R GTP + M Sbjct: 306 RVRPDTAFGADLIAGFPTETDEAFENTLKLVEEAGLAFLHVFPYSARPGTPAARMPPVKG 365 Query: 384 ENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK------LVGRSPWL 435 +K A RL ++ E+ + VG+++ L+E+ G + + G +P Sbjct: 366 PVIKDRARRLREAGQRGLERHLQRQ---VGRVLSGLVERDGVARAEDFTEIAFAGEAPSG 422 Query: 436 QSVVLNSKNHNIGDII 451 Q + H+ +I Sbjct: 423 QILAFRVTGHDGSRVI 438 >gi|269303129|gb|ACZ33229.1| RNA modification enzyme, MiaB family [Chlamydophila pneumoniae LPCoLN] Length = 468 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 115/416 (27%), Positives = 202/416 (48%), Gaps = 20/416 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + GYE N ++DAD ++LNTC + A ++ +L + ++ Sbjct: 22 SLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEAKDYLDHLIDV 81 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K K ++V GC+ +E+ ++ ++G + +E G+++ Sbjct: 82 KKENAK------IIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESGEKIS 135 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y + R Y A+L + EGC K C FC++P +G S+ L Q+ Sbjct: 136 AKSYIEMGEVPRQLSTPKHY-------AYLKVAEGCRKRCAFCIIPSIKGKLRSKPLDQI 188 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSH 269 + E R L++NGV EI L+ Q++ + GK L ++ + LL+ L + G LR + Sbjct: 189 LKEFRILVNNGVKEIILIAQDLGDY-GKDLSTDRSSQLESLLHELLKEPGDYWLRMLYLY 247 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P ++SD +I L+PY+ +P+Q ++RILK M R + + ++++R+ P + Sbjct: 248 PDEVSDGIIDLMRSNPKLLPYVDIPLQHINNRILKQMRRTTSREQILGFLEKLRAKVPQV 307 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 I S IVGFPGET ++F+ D + + F YS TP + + +Q+ E VK Sbjct: 308 YIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEKVKES 367 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-----GRSPWLQSVVL 440 RL L + + N +G+ IE +I+ + E L+ G++P + ++ Sbjct: 368 RLKILSQIQKRNVDKHNQKLIGEKIEAVIDNYHPETNLLLTARFYGQAPEVDPCII 423 >gi|33599243|ref|NP_886803.1| hypothetical protein BB0254 [Bordetella bronchiseptica RB50] gi|81432407|sp|Q7WQS2|RIMO_BORBR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|33575289|emb|CAE30752.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 439 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 150/471 (31%), Positives = 229/471 (48%), Gaps = 60/471 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S G + DS R+ ++GYE +DAD++V+NTC + A + Sbjct: 4 PKVGFV-SLGRPKALVDSERILTQLRTEGYEVTPEYNDADVVVVNTCGFIDSAKAESLEA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLER 142 +G I E G V+V GC+ E ++R+ P V V GPQ Y E + R Sbjct: 63 IGEA-------IAENGK--VIVTGCMGVEES--VIRQVHPSVLAVTGPQQY----EEVVR 107 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A G D++ L +V G A+L I EGC+ C+FC++P RG Sbjct: 108 AVHGVAPPRQDHN-----PYLDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGD 162 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +SR + V+ EA +L+ GV E+ ++ Q+ +A W G+ + K ++L Sbjct: 163 LVSRPVGDVLSEAERLVRAGVKELLVISQDTSAYGVDIKYRSGFWNGRPV---KTRMTEL 219 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +LSE+ RL Y +P D +I D VL PYL +P Q S RIL++M R Sbjct: 220 CAALSELGVWTRLHYVYPYPH--VDEVIGLMADGKVL-PYLDIPFQHASPRILRAMKR-- 274 Query: 311 TAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 A+E + + I R R PD+ + S FIVGFPGET++DF+ +D + + + F+YS Sbjct: 275 PAFEDKTLARIKRWREECPDLTLRSTFIVGFPGETEEDFQYLLDWMSEAQLDRVGCFQYS 334 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGKE 424 P G P + + V + VK ER ++ E Q + + A VG+ I+VLI+ +E Sbjct: 335 PVEGAPANTLDNPVPDEVKQERW----ERFMEHQQAISTARLSTRVGREIDVLIDSVDEE 390 Query: 425 KGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 VGRS P + V + GD+++VR+TD L+GE + Sbjct: 391 GA--VGRSSADAPEIDGCVYVDSEQPLKAGDMVRVRVTDSDEYDLWGERIA 439 >gi|154498439|ref|ZP_02036817.1| hypothetical protein BACCAP_02428 [Bacteroides capillosus ATCC 29799] gi|150272507|gb|EDM99692.1| hypothetical protein BACCAP_02428 [Bacteroides capillosus ATCC 29799] Length = 449 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 136/451 (30%), Positives = 233/451 (51%), Gaps = 34/451 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ ++ +M + G++ V + + AD+ VLNTC + A + + + L Sbjct: 16 SLGCAKNLVNTEQMMALCRDAGHQVVANPEGADVAVLNTCGFIDSAKSEAIDNILELAEL 75 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K+ G LLV GC++Q +E++ P V+ V+G +Y + +E G + Sbjct: 76 KSKGTL--GKLLVT--GCLSQRYKDELMEEMPEVDGVLGTGSYTDIVPAVESVMEGDQPT 131 Query: 151 ---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D D++VED +S TA+L I EGCD C++C++PY RG SR++ Sbjct: 132 FFGDIDHTVEDGARMVS--------TPAYTAYLKIAEGCDNRCSYCIIPYLRGRYRSRTM 183 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK-GLVRLRY 265 ++ EA++L D GV EI ++ Q++ + G D +K +LL L ++ VRL Y Sbjct: 184 ESLLAEAKELADRGVKEIIVIAQDITRY---GTDLYKKRMLGELLKELCKLPFHWVRLHY 240 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P ++ D LI ++ Y+ +P+Q +D++L+SMNRR T E ++D++R+ Sbjct: 241 L--YPDELDDDLIDVIASEPKILKYIDIPLQHINDKLLRSMNRRGTKAEILALLDKLRAR 298 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P + + + I G PGE +++F D + + +A F++SP GTP + M +QVD + Sbjct: 299 IPGLVLRTSLIAGLPGEGEEEFEELCDFLREAHIERAGIFQFSPEEGTPAAVMPDQVDPD 358 Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438 A R L+ LQ ++ + +FN++ +G+ +EVL E + G GR SP + Sbjct: 359 TAARRVELLVDLQSRVMD---AFNESRLGETLEVLCEGFDPDMGCYAGRSYADSPDVDGK 415 Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGEL 467 V + + G + VRIT + L GE+ Sbjct: 416 VFFTAAGLVPAGTFVNVRITGTEDGDLMGEI 446 >gi|325928882|ref|ZP_08190045.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas perforans 91-118] gi|325540743|gb|EGD12322.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas perforans 91-118] Length = 458 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 139/460 (30%), Positives = 216/460 (46%), Gaps = 44/460 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V S D AD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N V+V GC+ + E+I P V V GPQ Y + E + A Sbjct: 65 IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D F L + D G A+L I EGC+ C+FC++P RG + Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254 SR + +V+ EA +L+ GV E+ ++ Q+ +A+ G L + + D +Y L Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 SE+ RL Y +P + A G L +PYL +P Q S RILK M R + Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIGLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + + R +++ P+I + S FIVGFPGETD +F + +D +D+ + +F YSP G Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAS 340 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432 + + +QV E VK ERL K + ++ +G + + L++ E V RS Sbjct: 341 ANALPDQVPEEVKHERLARFMAKQAQISALRLESKIGSVQQCLVDV--IEDDIAVARSRA 398 Query: 433 --PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466 P + +V +GD++ V ITD L+G+ Sbjct: 399 DAPEIDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 438 >gi|281357420|ref|ZP_06243908.1| MiaB-like tRNA modifying enzyme [Victivallis vadensis ATCC BAA-548] gi|281316023|gb|EFB00049.1| MiaB-like tRNA modifying enzyme [Victivallis vadensis ATCC BAA-548] Length = 432 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 126/432 (29%), Positives = 214/432 (49%), Gaps = 22/432 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + + GC++N DS + D GY V S+D DL+V+N+C + +AA K + + R Sbjct: 7 LHTLGCRLNSADSALLVDRLEKAGYSVVQSVDSVDLVVVNSCTVTAEAARKSRQAVRKFR 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ----TYYRLPELLERAR 144 L+VV GC A+ + + L+ V+ P+ + L L R Sbjct: 67 ASYPG-------ALIVVTGCSAELDRDAYLKDGAASVVLSNPEKRGISELILDYLAGRHE 119 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + + V+ F +I + + AFL IQEGC+ FC++C+VPY RG E S Sbjct: 120 LGGKAASLNEPVQ-AFHEEAISRFPFRSR----AFLKIQEGCNNFCSYCIVPYARGPERS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS +V+ + R+ + G E+ L G N A+ G D L+ + I G R+R Sbjct: 175 RSFDEVLADCRQAVAAGYPELVLTGVNTCAYFDAGRD-----LGALVREVCRIDGNFRVR 229 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +++ P + L++ + +LHL +Q+G +RILK+MNR + +Y + R Sbjct: 230 LSSTEPHPHNIGLLEVMASEPKVCRFLHLALQNGCNRILKAMNRHYRREDYAEFARIARE 289 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P I + SD I+GFPGET++DF + V+++ +A F YSPR GTP +++ ++ Sbjct: 290 KIPGIHLGSDLILGFPGETEEDFADGLAFVEQMAFANLHIFTYSPRSGTPAASLPGRIPP 349 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 V R L++ + F ++ +GQ++ V+ E G++ G G S +V + + + Sbjct: 350 EVAKLRYRKLKEVAEASRRKFVESQLGQVLPVIFETVGRD-GLARGWSDNYLAVRVPAGS 408 Query: 445 HNIGDIIKVRIT 456 +G I+ + T Sbjct: 409 VELGTIVDIAAT 420 >gi|295103959|emb|CBL01503.1| SSU ribosomal protein S12P methylthiotransferase [Faecalibacterium prausnitzii SL3/3] Length = 441 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 134/451 (29%), Positives = 221/451 (49%), Gaps = 30/451 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D M + S G+E V + +AD+I++NTC E A + + Sbjct: 7 SLGCPKNQVDLDVMVHILLSAGHETVADLAEADVILVNTCGFIESAKTEAIENILEACAY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K ++ +L V+V GC+A+ +I P V+ VVG + + ++ER G+ + Sbjct: 67 K----QQNPNLKVIVTGCLAERYRSQIEEEIPEVDAVVGCASNKAIDTIVERLFHGEDHL 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 ++ Y + F G R G A +L I EGC+ C +C +P RG SR + Sbjct: 123 ES-YGAKKDFPL------GGKRVIGTPAHYAYLKIAEGCNNRCHYCAIPGIRGPLHSRDM 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 + V EAR L GV E+ ++ Q+ A+ G D G+ + +LL L+++ GL +R Sbjct: 176 ADCVAEARWLAGEGVKELIVVAQDPTAY---GEDWGKPGSICELLDKLNKVPGLEWIRIM 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P ++D I A + ++PYL LP+Q +D ILK+MNRR T E ++I ++R Sbjct: 233 YAYPERITDEFIAAMKRNEKVVPYLDLPIQHCNDTILKNMNRRSTRAELLEVIGKLRREI 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P I + + I GFPGET++ F + V ++ + + F YS T + M Q+++ V Sbjct: 293 PGITLRTTLIAGFPGETEEQFEDLCNFVKEVQFDRLGCFAYSAEENTVAAKMDGQIEQEV 352 Query: 387 K---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVV 439 K AE ++ +Q + Q+ + VGQ + VL + +E G + G +P + V Sbjct: 353 KDKRAELVMQIQTGIMAQKQAEK---VGQTVHVLCDGIDEENGLYLCRTTGDAPEVDGCV 409 Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468 S + G V + D + LYG +V Sbjct: 410 CVSSEEPLYPGQFYDVLVEDSDLYDLYGTVV 440 >gi|289663191|ref|ZP_06484772.1| hypothetical protein XcampvN_08922 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 454 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 140/460 (30%), Positives = 214/460 (46%), Gaps = 44/460 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V S D AD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N V+V GC+ + E+I P V V GPQ Y + E + A Sbjct: 65 IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D F L + D G A+L I EGC+ C+FC++P RG + Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254 SR + +V+ EA +L+ GV E+ ++ Q+ +A+ G L + + D +Y L Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 SE+ RL Y +P + A G L +PYL +P Q S RILK M R + Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + + R +++ P+I + S FIVGFPGETD +F + +D +D+ + +F YSP G Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAG 340 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432 + + + V E VK ERL K E +A +G + + L++ E V RS Sbjct: 341 ANALPDPVPEEVKQERLARFMAKQAEISALRLEAKIGSVQQCLVDL--IEDDIAVARSRA 398 Query: 433 --PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466 P + V +GD++ V ITD L+G+ Sbjct: 399 DAPEIDGFVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 438 >gi|288817533|ref|YP_003431880.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6] gi|288786932|dbj|BAI68679.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6] gi|308751136|gb|ADO44619.1| MiaB-like tRNA modifying enzyme [Hydrogenobacter thermophilus TK-6] Length = 410 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 137/439 (31%), Positives = 223/439 (50%), Gaps = 44/439 (10%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF + GC+ N +D+ + F +GY+ V+ D AD+ V+NTC + A + R Sbjct: 6 FF--TLGCRSNEFDTHFIAHQFQLKGYQVVD-FDKADIYVINTCSVTAGAERSSRQAIYR 62 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG---PQTYYRLPELLERA 143 + L + LVVV GC AQ + L V++VVG + R+ E Sbjct: 63 AKRL-------NPNSLVVVTGCYAQI-NPQALSELKEVDLVVGNTHKRDILRIVEEYLSE 114 Query: 144 RFGKRVVDTDY---SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R GK VD + SVE FE ++ + V F+ +QEGC++FC+FCV+P+ RG Sbjct: 115 RKGKVYVDNVFRQNSVES-FELITYFEK-------VRPFVKVQEGCNRFCSFCVIPFARG 166 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S +V+ EA L + G EI L G + + G + + C DLL L +I+G+ Sbjct: 167 KSRSVLKEKVLKEAELLAERGFKEIVLTGTQLTQY-GWDIATDLC---DLLKDLVKIRGI 222 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++ +P ++S L+ + + P+ HLP+QSGSDRIL+ M R ++ +Y +++ Sbjct: 223 ELIRLSSLYPSEISQKLLDFVLLEEKIAPHFHLPLQSGSDRILQLMRRDYSVKDYVHLVE 282 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++ RP ++ +D IVGFP E+D DF T L+ ++ F YS R GT M Sbjct: 283 KVIEKRPLSSVGTDVIVGFPSESDKDFEETYKLLSQLPIHYMHVFPYSDREGTKACKMSR 342 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVV 439 +V + VK ER+ L K L +Q+ + E L + GKE + ++ + L Sbjct: 343 KVSQKVKKERVKTL-KSLDQQKRA----------EFLKKNEGKELRALVIEENMLLTENY 391 Query: 440 LNSKNH---NIGDIIKVRI 455 LN + +IG++++V++ Sbjct: 392 LNLEREGYTSIGELVRVKV 410 >gi|317047503|ref|YP_004115151.1| MiaB-like tRNA modifying enzyme YliG [Pantoea sp. At-9b] gi|316949120|gb|ADU68595.1| MiaB-like tRNA modifying enzyme YliG [Pantoea sp. At-9b] Length = 441 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 135/467 (28%), Positives = 230/467 (49%), Gaps = 54/467 (11%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P R S GC N+ DS R+ ++GY+ V DDA+++++NTC + A ++ Sbjct: 7 PPRVGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDAEIVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ A+ ++I P V + GP +Y Sbjct: 67 IGEALN-------ENGK--VIVTGCLG-AKVDQIREVHPKVLEITGPHSY---------- 106 Query: 144 RFGKRVVDTDYSVEDKFER---LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 ++V+ + K E LS+V G A+L I EGC+ CTFC++P R Sbjct: 107 ---EQVLSHVHHYVPKPEHNPFLSLVPQQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMR 163 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G SR + V+DEA++L++ GV E+ ++ Q+ +A W G + K + Sbjct: 164 GDLDSRPIGAVLDEAKRLVEAGVKELLVISQDTSAYGVDVKHRTGFWNGSPV---KTSMV 220 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 L L+++ VRL Y +P + A G + +PYL +P+Q S RILK M R Sbjct: 221 SLCEQLAKLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKR 277 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + I R R + P++ + S FIVGFPGET++DF+ +D + + + F+YS Sbjct: 278 PGAVERTLERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFQYS 337 Query: 369 PRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 P G + + + V ++VK ER + LQ+++ +++ +G+ I V+I++ +E Sbjct: 338 PVEGATANQLPDPVPDDVKQARFERFMQLQQQISAERLQEK---IGREILVIIDEVDEEG 394 Query: 426 --GKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 G+ + +P + +V LN +GD+++V++ L+G V Sbjct: 395 AVGRSMADAPEIDGAVYLNGDRQVKVGDVVRVKVDHADEYDLWGTRV 441 >gi|218532165|ref|YP_002422981.1| ribosomal protein S12 methylthiotransferase [Methylobacterium chloromethanicum CM4] gi|238066390|sp|B7L2K9|RIMO_METC4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|218524468|gb|ACK85053.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium chloromethanicum CM4] Length = 448 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 138/458 (30%), Positives = 209/458 (45%), Gaps = 42/458 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE D AD++++NTC + A + + Sbjct: 15 APRISFV-SLGCPKALVDSERILTHLRAEGYELSRRHDGADVVIVNTCGFLDSAKAESLA 73 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +N R V+V GC+ A+ EEI + P + V GPQ Y + + Sbjct: 74 AIGEAMA-ENGR--------VIVTGCMG-AQPEEIREKYPNLLAVTGPQAYESVVAAVHE 123 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D F L I G A+L I EGC+ CTFC++P RG Sbjct: 124 AV---------PPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPSLRGDL 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-----------FSDLL 251 +SR V+ EA KL+ GV E+ ++ Q+ +A+ G+D T F DL Sbjct: 174 VSRPAGDVLREAEKLVKAGVKELLVVSQDTSAY---GIDTRYATSPWQDREVRARFYDLA 230 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L E+ VRL Y +P + A G + +PYL +P+Q S +LK M R Sbjct: 231 SELGELGAWVRLHYVYPYPHVDEVIPLMAEGKI---LPYLDMPLQHASPSVLKRMRRPGN 287 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I R R + PD+AI S FIVGFPGETD +F +D + + + F+Y P Sbjct: 288 QEKQLDRIRRWREICPDLAIRSTFIVGFPGETDAEFEELLDWIREARLERVGCFEYEPVR 347 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLV 429 G +++ V VKAER + + A VG+ + V+I++ G +G+ Sbjct: 348 GATANDLGLLVPPEVKAERKRRFMEAQSHVSLRLQRAKVGKRLSVIIDEAGPTGARGRSK 407 Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465 +P + V + + GDI+ V+I L+G Sbjct: 408 ADAPEIDGSVHVTSRRPVRPGDIVTVKIERADAYDLHG 445 >gi|170748057|ref|YP_001754317.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium radiotolerans JCM 2831] gi|238066400|sp|B1M6H4|RIMO_METRJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|170654579|gb|ACB23634.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium radiotolerans JCM 2831] Length = 448 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 142/468 (30%), Positives = 220/468 (47%), Gaps = 56/468 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE D AD++++NTC + A + S Sbjct: 15 APKISFV-SLGCPKALVDSERILTHLRAEGYELARRHDGADVVIVNTCGFLDSAKAESLS 73 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +N R V+V GC+ A+ EEI + P + V GPQ Y + + Sbjct: 74 AIGEAMA-ENGR--------VIVTGCMG-AQPEEIREKYPDLLAVTGPQAYESVVAAVHE 123 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D F L G R A+L I EGC C+FC++P RG Sbjct: 124 AV---------PPAHDPFLDLVPPQGIKLTPRHY-AYLKISEGCSNRCSFCIIPSLRGNL 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR + V+ EA KL+ GV E+ ++ Q+ +A WR + + + F DL Sbjct: 174 VSRPAADVLREAEKLVKAGVKELLVVSQDTSAYGVDIRYSESPWRDRQV---RAKFYDLT 230 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L E+ VRL Y +P + A G + +PYL +P+Q S +LK M R Sbjct: 231 RELGELGAWVRLHYVYPYPHVDEVIPLMAEGKV---LPYLDMPLQHASPSVLKRMRR--P 285 Query: 312 AYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + RQ+ DRIRS R PD+AI S FIVGFPGET+ +F + + + + F+Y Sbjct: 286 GNQERQL-DRIRSWRQTCPDLAIRSTFIVGFPGETEAEFEELLAWLQEAKLDRVGCFEYE 344 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ----VSFNDACVGQIIEVLIE--KHG 422 P G + + + V VKAER +++ E Q + A VG+ + V+++ + G Sbjct: 345 PVAGATANALGDPVPPAVKAER----KRRFMETQNGIALRLQRAKVGKRLPVIVDSVEGG 400 Query: 423 KEKGKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGELV 468 +G+ +P + V + + +GDI+ V+I + LYG + Sbjct: 401 VARGRSKADAPEIDGTVHAAFRRPVRVGDIVTVKIDRAEAYDLYGSVA 448 >gi|309777726|ref|ZP_07672675.1| 2-methylthioadenine synthetase [Erysipelotrichaceae bacterium 3_1_53] gi|308914492|gb|EFP60283.1| 2-methylthioadenine synthetase [Erysipelotrichaceae bacterium 3_1_53] Length = 405 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/363 (31%), Positives = 184/363 (50%), Gaps = 21/363 (5%) Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162 ++V GC+AQ E++ + P ++ V+ + Y +L E+L++ G ++ D K ER Sbjct: 46 LIVVGCLAQRYKEQLEQDIPEIDAVISIREYPQLHEILQQLLDGHDLISYD-----KCER 100 Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222 + TA+L I EGC CT+C +P RG +S + Q+V EA KL GV Sbjct: 101 KV-------SSKPWTAYLKIAEGCSNHCTYCAIPLIRGDNVSFPIEQLVKEATKLAQRGV 153 Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282 E+ ++ Q+ + G L G + DLL L I+ +R +P ++ LI+ Sbjct: 154 KELVVIAQDTTKY-GVDLYGRRALL-DLLKELHAIEDFHWIRILYMYPDEIDTELIEGMA 211 Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342 L ++PY +P+Q S+R+L+ MNRR + E ++ +IR+ + + FIVGFP E Sbjct: 212 QLPKVLPYFDIPMQHASNRMLQLMNRRGSKEEVLTLVQKIRATFAYPTLRTTFIVGFPTE 271 Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402 D DF M V+ I + + +F YSP TP M VDE VK RL L K+ E Sbjct: 272 QDADFEELMQFVEDIHWDRMGAFTYSPEEDTPAYTMDGAVDEEVKEARLAHLMKRQEEIS 331 Query: 403 VSFNDACVGQIIEVLIEKH----GKEKGKLVGRSP-WLQSVVLNSKNHNI--GDIIKVRI 455 + VG++IEVL+E G +G+ + +P + +V+ + I G +KVRI Sbjct: 332 LENQKKMVGEVIEVLVEDQEGLSGIYRGRGISSAPDEVDGIVMFKSDRFIEFGSFVKVRI 391 Query: 456 TDV 458 T+ Sbjct: 392 TEA 394 >gi|295101447|emb|CBK98992.1| SSU ribosomal protein S12P methylthiotransferase [Faecalibacterium prausnitzii L2-6] Length = 441 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 137/451 (30%), Positives = 221/451 (49%), Gaps = 30/451 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D M + S G+E V + DAD+I++NTC E A + + + Sbjct: 7 SLGCPKNQVDLDVMVHILLSAGHETVADLADADVILVNTCGFIESAKTEAIENILEACSY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K + +L VVV GC+A+ +I P V+ VVG + + ++ R G+ + Sbjct: 67 KQAN----PNLKVVVTGCLAERYRSQIEEEIPEVDAVVGCASNKAIDSIVARLFNGEEHL 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 ++ Y ++ F G R G A +L I EGC+ C +C +P RG SR + Sbjct: 123 ES-YGLKKDFPL------GGKRVIGTPAHYAYLKIAEGCNNRCHYCAIPGIRGPLRSREM 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 + V EAR L GV E+ ++ Q+ A+ G D G+ + +LL L++I GL +R Sbjct: 176 ADCVAEARWLAGEGVKELIIVAQDPTAY---GEDWGKPGSICELLDKLNKIPGLEWIRIM 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P ++D I A + ++PYL LP+Q +D ILK+MNRR E +I ++R Sbjct: 233 YAYPERITDDFIAAMKRNEKVLPYLDLPIQHCNDTILKNMNRRSNRAELLDVIGKLRREI 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P+I + + I GFPGET++ F + V ++ + + F YS T + M Q+D+ V Sbjct: 293 PNITLRTTLIAGFPGETEEQFEDLCNFVKEVQFDRLGCFAYSAEENTVAARMDGQIDQEV 352 Query: 387 K---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV 439 K AE ++ +Q + Q+ + A VGQ + VL + E G + R+ P + V Sbjct: 353 KDKRAELVMQIQTGIMAQKQA---AKVGQTVRVLCDGVDDESGLYLCRTAADAPEVDGNV 409 Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468 S + G+ V + D + LYG +V Sbjct: 410 CVSSEEPLYPGEFYDVLVDDSDLYDLYGTVV 440 >gi|304314978|ref|YP_003850125.1| 2-methylthioadenine synthetase [Methanothermobacter marburgensis str. Marburg] gi|302588437|gb|ADL58812.1| predicted 2-methylthioadenine synthetase [Methanothermobacter marburgensis str. Marburg] Length = 427 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 138/450 (30%), Positives = 230/450 (51%), Gaps = 39/450 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R +++++GC N DS M + G + +D+AD+I+LNTC+++ KV + + Sbjct: 5 RVYIETFGCTFNQADSEIMAGVLSEAGAS-LTGIDEADVIILNTCYVKHPTEHKVINRIK 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIR + D +VVAGC+ + + +++ S + + GP R E++ A Sbjct: 64 RIREMYP-------DKGLVVAGCMVEIDPQKLESISGDASWL-GPHQLMRTAEVVGAAYR 115 Query: 146 G--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G KR+ V+ R+ R + + I EGC C++C + RG Sbjct: 116 GDVKRITGFTSDVKVGVPRV--------RSNPLIHIIQICEGCSGSCSYCCTRFARGSIQ 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 S +V EAR+ I+ G EI L Q+ A+ G D GE+ SDL+ ++EI G R Sbjct: 168 SYPSDIIVQEAREAIEAGCREIQLTAQDTAAY---GSDTGER--LSDLIREITEIPGDFR 222 Query: 263 LRYTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 +R HP RD+ D L++A V +LHLPVQSGSDR+L+ M R HT ++R I Sbjct: 223 VRVGMMHPASVLRDL-DGLVEAFRSEKVY-SFLHLPVQSGSDRVLRDMGRGHTVDDFRMI 280 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTPGS 376 +DR RS P+I+I++D IVG+P E +DDF T L++++ G+ +++ PR + Sbjct: 281 VDRFRSRIPEISIATDIIVGYPTEGEDDFLDTCRLLEEVRPGFIHLSKYRHRPRAFSSSL 340 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 + ++ + +++ + L+ ++ E++ N VG +LI + G+ KG +GR+ Sbjct: 341 DEIDFRELRRRSKAVEELKGRITEEE---NRRLVGTTQNILIVERGR-KGGFIGRTDSYI 396 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 VV + + +G VRI + L E Sbjct: 397 PVV--THDGEVGSFRSVRIKRATGTYLIAE 424 >gi|160942860|ref|ZP_02090099.1| hypothetical protein FAEPRAM212_00336 [Faecalibacterium prausnitzii M21/2] gi|158445761|gb|EDP22764.1| hypothetical protein FAEPRAM212_00336 [Faecalibacterium prausnitzii M21/2] Length = 441 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 134/451 (29%), Positives = 221/451 (49%), Gaps = 30/451 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D M + S G+E V + +AD+I++NTC E A + + Sbjct: 7 SLGCPKNQVDLDVMVHILLSAGHETVADLAEADVILVNTCGFIESAKTEAIENILEACAY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K ++ +L V+V GC+A+ +I P V+ VVG + + ++ER G+ + Sbjct: 67 K----QQNPNLKVIVTGCLAERYRSQIEEEIPEVDAVVGCASNKAIDTIVERLFHGEDHL 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 ++ Y + F G R G A +L I EGC+ C +C +P RG SR + Sbjct: 123 ES-YGAKKDFPL------GGKRVIGTPAHYAYLKIAEGCNNRCHYCAIPGIRGPLHSRDM 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 + V EAR L GV E+ ++ Q+ A+ G D G+ + +LL L+++ GL +R Sbjct: 176 ADCVAEARWLAGEGVKELIVVAQDPTAY---GEDWGKPGSICELLDKLNKVPGLEWIRIM 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P ++D I A + ++PYL LP+Q +D ILK+MNRR T E ++I ++R Sbjct: 233 YAYPERITDEFIAAMKRNEKVVPYLDLPIQHCNDTILKNMNRRSTRAELLEVIGKLRREI 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P I + + I GFPGET++ F + V ++ + + F YS T + M Q+++ V Sbjct: 293 PGITLRTTLIAGFPGETEEQFEDLCNFVKEVQFDRLGCFAYSAEENTVAARMDGQIEQEV 352 Query: 387 K---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVV 439 K AE ++ +Q + Q+ + VGQ + VL + +E G + G +P + V Sbjct: 353 KDKRAELVMQIQTGIMAQKQAEK---VGQTVHVLCDGIDEENGLYLCRTTGDAPEVDGCV 409 Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468 S + G V + D + LYG +V Sbjct: 410 CVSSEEPLYPGQFYDVLVEDSDLYDLYGTVV 440 >gi|217077525|ref|YP_002335243.1| hypothetical protein THA_1459 [Thermosipho africanus TCF52B] gi|238066615|sp|B7ID25|RIMO_THEAB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|217037380|gb|ACJ75902.1| conserved hypothetical protein [Thermosipho africanus TCF52B] Length = 427 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 132/450 (29%), Positives = 221/450 (49%), Gaps = 35/450 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC----HIREKAAEKVYS 82 F+V GC N D ++ +G VN+++DAD +V++TC ++++ E++ + Sbjct: 3 FYVDVLGCPKNEADCALLKAYLEKKGNNIVNTIEDADAVVIDTCGFILEAKKESIEEILT 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +L LK R DL V V GC+ Q GEE+ + P V+ G LP Sbjct: 63 YL----ELKKER-----DLKVYVTGCLVQRYGEELKKEIPEVDGWFG-----ILPPEKIA 108 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 GK + + E + G + K+ A++ I +GCD+ C+FC +P +G Sbjct: 109 ENIGKESI-----IPKNPEPVYEFGGRVDEKQ--YAYVKISDGCDRACSFCTIPLFKGSF 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR + +V E LI +G EI L+ Q+ + G L G K +LL +++I G Sbjct: 162 KSRKIDDIVKEVEYLILSGKKEIILVAQDTTGY-GIDLYG-KQMLPELLKRINDIPGDFW 219 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R HP ++D +I+A D ++ Y +PVQ GSD++LK MNR + +++++I Sbjct: 220 IRVMYMHPDHITDEIIEAFS-YDKVLKYFDIPVQHGSDKVLKLMNRTKKSEHILKLVEKI 278 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R D + + IVGFPGETD+DF +D + + + + +F YS P + +V Sbjct: 279 RKRYEDAVLRTSIIVGFPGETDEDFEELLDFIKMVRFERLGAFIYSDEEEAPSYHFEGKV 338 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSV 438 E V ERL L ++ + N+ VG+ +VL ++ +E+G L+ RS P + Sbjct: 339 PEIVAQERLDILMEEQSKISFEINEKMVGKTFKVLFDE--EEEGVLIARSYMDAPEIDGN 396 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + G KV++T + L G++V Sbjct: 397 IFVPGKFEEG-FFKVKVTSADVYDLEGKIV 425 >gi|78048443|ref|YP_364618.1| ribosomal protein S12 methylthiotransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123771309|sp|Q3BRJ5|RIMO_XANC5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|78036873|emb|CAJ24566.1| MiaB-family RNA modification enzyme [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 458 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 139/460 (30%), Positives = 216/460 (46%), Gaps = 44/460 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V S D AD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N V+V GC+ + E+I P V V GPQ Y + E + A Sbjct: 65 IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D F L + D G A+L I EGC+ C+FC++P RG + Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254 SR + +V+ EA +L+ GV E+ ++ Q+ +A+ G L + + D +Y L Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 SE+ RL Y +P + A G L +PYL +P Q S RILK M R + Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIGLMAEGRL---LPYLDIPFQHASPRILKLMKRPGAVEK 280 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + + R +++ P+I + S FIVGFPGETD +F + +D +D+ + +F YSP G Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAS 340 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432 + + +QV E VK ERL K + ++ +G + + L++ E V RS Sbjct: 341 ANALPDQVPEEVKHERLARFMAKQAQISALRLESKIGSVQQCLVDV--IEDDIAVARSRA 398 Query: 433 --PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466 P + +V +GD++ V ITD L+G+ Sbjct: 399 DAPEIDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 438 >gi|332797846|ref|YP_004459346.1| MiaB family RNA modification protein [Acidianus hospitalis W1] gi|332695581|gb|AEE95048.1| RNA modification enzyme, MiaB family [Acidianus hospitalis W1] Length = 417 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 140/447 (31%), Positives = 234/447 (52%), Gaps = 35/447 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + + ++YGC +N D+ M + + +E VN+ ++AD+IVLNTC +R + E++ S Sbjct: 2 KVYFETYGCALNKGDTYIMMTLLKQRNHEIVNNPNEADVIVLNTCDVRLETGERMKS--- 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI+ L+ K G L VVAGC + AE + +P +++ GPQ ++ + +E Sbjct: 59 RIKELR----KFGKKL--VVAGCFSGAEPGVVKTLAPEASII-GPQALTKIIDAVE---- 107 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G+++ + ER I + G A + I +GC C+FC+ R S Sbjct: 108 GEKIFSINA------ERSEITPRVF---EGKIAIIPIADGCAGDCSFCITKLARRTLRSY 158 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 S+ +V+ ++ + NG E+ L GQ+ A+ GLD G K SDLL + I+G +R Sbjct: 159 SMRSIVEAVKEAVKNGAVEVELTGQDAAAY---GLDLGGKIKLSDLLNEVLSIEGDFMIR 215 Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 P + D +++A + L +LHLPVQSG D +LK MNR++T EY++++ Sbjct: 216 IGMMTPEQFARDIDGILEAMRNPK-LFKFLHLPVQSGDDNVLKLMNRKYTVDEYKELVKE 274 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 RS P+I I++D I+G PGE ++ F T++L+ +I + + YS R T S +++Q Sbjct: 275 ARSKIPNINITTDIIIGHPGEDENAFENTLELMKEIKFERVHLAMYSIRPNTR-SALMKQ 333 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V ++VK ER+ K + +S + + + +V+ + GK KG ++GR+ V+LN Sbjct: 334 VPDSVKKERMRIAYKLYEDISLSIHKEYLNKRTKVITTEEGK-KGSIIGRTLNYIPVILN 392 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG V I D L G +V Sbjct: 393 GV--EIGKWYDVEIIDYSFFDLRGTVV 417 >gi|258620505|ref|ZP_05715543.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258587384|gb|EEW12095.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 470 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 132/453 (29%), Positives = 221/453 (48%), Gaps = 46/453 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GYE VNS D+D++++NTC + A ++ +G Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI + P V + GP Y + E + + Sbjct: 96 ----LKENGK--VIVTGCLGARE-DEIRQVHPNVLGITGPHAYQNVLEHVHQY------- 141 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F L + D G A+L I EGC+ CTFC++P RG +SR + ++ Sbjct: 142 -APKPAHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259 + EA +L + GV E+ ++ Q+ +A+ G+D + + L L ++ Sbjct: 200 IGEAERLKNAGVKELLVISQDTSAY---GVDTKHSLGFASGSPVRHNIKALSEELGKMGI 256 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S R+LK M R A + I Sbjct: 257 WVRLHYVYPYPHVDEIIPLMAEGKV---LPYLDIPFQHASPRVLKMMKRPGQAERTLERI 313 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET++DF+ +D + + + FKYSP G + + Sbjct: 314 KKWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIE 373 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 +Q+ E VK ER + +Q+++ ++ +G + VLI++ +E G+ +P Sbjct: 374 DQIPEEVKQDRFERFMLVQQEISAAKLQKR---IGSTMRVLIDEVDEEGAIGRTYADAPE 430 Query: 435 LQSVV-LNSK-NHNIGDIIKVRITDVKISTLYG 465 + +V LN + N G+++ V I L+G Sbjct: 431 IDGLVYLNGETNLKPGELVNVVIEHADEYDLWG 463 >gi|150006722|ref|YP_001301465.1| putative Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503] gi|149935146|gb|ABR41843.1| putative Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503] Length = 444 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 124/403 (30%), Positives = 200/403 (49%), Gaps = 22/403 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + QG +V + AD+ V+NTC + E A +K + RI Sbjct: 16 TLGCKLNFAETSTIGKLLAEQGVRKVRPGEKADICVVNTCSVTELADKKCRQAIRRIG-- 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---ELLERARFGK 147 K+ +VV GC AQ + EE+ V++V+G + + E LE+ G Sbjct: 74 -----KQHPGAFIVVTGCYAQLKPEEVSHIEG-VDLVLGAEQKLEILQYLENLEKKENGG 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 V+ + F D +R R FL +Q+GCD +C++C +P+ RG + ++ Sbjct: 128 AVIASQSKDIRSFSPSCSAD---DRTR---HFLKVQDGCDYYCSYCTIPFARGRSRNGTI 181 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++A+++ G EI L G N+ + GK D TF DL+ +L E+ G+VR R ++ Sbjct: 182 ASMVEQAQEVARKGGKEIVLTGVNIGDF-GKSTDE---TFIDLIRALDEVDGIVRYRISS 237 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D I P+ H+P+QSGSD +L+ M RR+ +R I++I+ V P Sbjct: 238 IEPNLITDEAIDFVAHSKRFAPHFHIPLQSGSDAVLQLMRRRYDTALFRHKIEKIKEVMP 297 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 I D IVG GETD+ F + + +Q F YS R GT + VD K Sbjct: 298 HAFIGVDVIVGTRGETDEYFEEARQFIGSLDISQLHVFSYSERPGTQALKIDHVVDPKTK 357 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 R L + +F +A +GQ + VL E H K+ GK+ G Sbjct: 358 HARSQQLLDISDRKLHAFYEAHIGQEVNVLFE-HTKKDGKMHG 399 >gi|320355049|ref|YP_004196388.1| 30S ribosomal protein S12P methylthiotransferase [Desulfobulbus propionicus DSM 2032] gi|320123551|gb|ADW19097.1| SSU ribosomal protein S12P methylthiotransferase [Desulfobulbus propionicus DSM 2032] Length = 448 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 132/454 (29%), Positives = 219/454 (48%), Gaps = 27/454 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++ S GC N+ DS M GY V+ D A ++++NTC A E+ + Sbjct: 4 LYIVSLGCPKNLVDSEVMLAALEQSGYAVVDDPDQASVLLINTCGFIRPAVEEAIDTIFE 63 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + K + +VV GC+ Q G E+L P V++ VG + R+ +LE+ Sbjct: 64 LAAYKEQNPHQK----LVVTGCMVQRYGSELLNELPEVDLFVGLDDFPRIGTMLEQLPLR 119 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + T S F +++ R+ A+L I EGCD C +C++P RG Sbjct: 120 PQCIVT--SGPSTF----LMNNTLPRRISTPFFRAYLKITEGCDNRCAYCMIPSIRGRLR 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR+++ ++ EA +L GV E+ L+ Q++ A+ G+ L G + LL +L + L Sbjct: 174 SRAMTDLLLEATRLQQAGVRELALIAQDLTAY-GRDL-GNGTSLVSLLEALLTQTDIPWL 231 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++P ++D L+ D L+PYL +P Q S +L++MNR + + +I RIR Sbjct: 232 RLLYAYPSGITDDLLHLMADQPRLLPYLDIPFQHVSTPVLRAMNRHYDHRALQDLILRIR 291 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PD AI + +VGFPGET DD ++ + F+Y G+ + + +++ Sbjct: 292 RIVPDCAIRTTMLVGFPGETRDDVDLLLEALQTWQLDHVGVFQYQDEEGSRAAKLPDKIS 351 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRS----PWL 435 E K R ++ +Q + Q+ VG++ VL+E +E L+ GRS P + Sbjct: 352 EEKKEARYQQVMAVQATISAQR---QQRFVGRVEPVLVEGISEESDLLLEGRSRFQAPEI 408 Query: 436 QSVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 V + H GDI+ VRIT+ L GE+V Sbjct: 409 DGCVYITAGHVTPGDIVPVRITEAHTYDLVGEVV 442 >gi|27379686|ref|NP_771215.1| ribosomal protein S12 methylthiotransferase [Bradyrhizobium japonicum USDA 110] gi|81737050|sp|Q89LG9|RIMO_BRAJA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|27352838|dbj|BAC49840.1| blr4575 [Bradyrhizobium japonicum USDA 110] Length = 439 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 134/461 (29%), Positives = 216/461 (46%), Gaps = 47/461 (10%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R S GC + DS R+ ++GYE D AD++++NTC + A ++ S +G Sbjct: 6 RISFTSLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAKQESLSAIG 65 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + E G V+V GC+ AE E+I + P V + GPQ Y + + + RA Sbjct: 66 EA-------MAENGK--VIVTGCMG-AEPEQIEQAYPGVLSITGPQQYESVLDAVHRALP 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 D + G A+L I EGC+ CTFC++P RG +SR Sbjct: 116 PAHNPHLDL----------VPPQGIKLTPRHYAYLKISEGCNNRCTFCIIPKLRGDLVSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254 + V+ EA +L+ GV E+ ++ Q+ +A W+ + + + F DL L Sbjct: 166 PANDVLREAERLVGAGVKELLVISQDTSAYGVDLKYAESPWKDRQV---RAKFLDLAREL 222 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 E+ VRL+Y +P + G ++PYL +P Q S +LK+M R + Sbjct: 223 GELGAWVRLQYVYPYPHVDEVIALMTQG---TVLPYLDIPFQHASPEVLKAMKRPAAQDK 279 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 I R R PD+A+ S FIVGFPGETD DF +D +D+ + FKY P G Sbjct: 280 TLARIKRWREECPDLALRSTFIVGFPGETDADFAYLLDWLDEAEIDRLGCFKYEPVAGAT 339 Query: 375 GSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLV 429 + + V E VK ER L+ Q+K+ +++ VG +++I++ G +G+ Sbjct: 340 SNAIANPVPEEVKQERYNALMARQQKISARRLKRK---VGTRQQIIIDEVGPTVARGRSK 396 Query: 430 GRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 +P + +V L+S+ +G+I+ +I L+G + Sbjct: 397 ADAPEIDGAVYLSSRRPLRVGEIVTAKIERADQYDLHGSVA 437 >gi|160915016|ref|ZP_02077229.1| hypothetical protein EUBDOL_01023 [Eubacterium dolichum DSM 3991] gi|158432815|gb|EDP11104.1| hypothetical protein EUBDOL_01023 [Eubacterium dolichum DSM 3991] Length = 435 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 127/442 (28%), Positives = 219/442 (49%), Gaps = 21/442 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + + GC++N Y+S E +GY V+ + AD+ ++NTC + AA K + + Sbjct: 4 FAIATLGCKVNTYESQGYEAALLERGYTEVSFKEKADIYIINTCAVTNTAASKSRQKIHQ 63 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 L + + V GC Q+ +++ V+++VG + L + +E G Sbjct: 64 AHALNPT-------ACIAVVGCYVQSNHDQVADIDG-VSILVGSKGKSMLVDQIEAYLQG 115 Query: 147 KRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + V + D FE L + + + AFL IQ+GC++FC++C++PY RG E S Sbjct: 116 QSVCEERIDARSISAFEALKVERFEHQTR----AFLKIQDGCNQFCSYCIIPYARGAERS 171 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRL 263 + QV++ A++L++N EI L G + G+ +G DLL L +E+ L R+ Sbjct: 172 LAEDQVIESAKQLVNNQHLEIVLTGIHT----GRYGNGTGRNLLDLLKRLVAEVPKLRRI 227 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ ++SD LI + + +LH+P+Q+ S+ +L+ M R +T + + + IR Sbjct: 228 RISSIEMNEISDELIAFMKEEPRIARHLHIPLQAASNTVLQRMRRPYTVEWFMERVAYIR 287 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S DI+ISSD I GFP E++++F ++++ + F YS R T + M +D Sbjct: 288 SQIADISISSDVITGFPQESEEEFMEGYRNIEEMQLSFLHVFPYSKRDFTDAAKMPGHLD 347 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 K R L + +E S+ +GQ I VL EK + +G L G S V + Sbjct: 348 RKTKKARGAKLAQLSKELYTSYKQRFIGQKISVLFEK--EVEGMLFGHSSEYLEVYAKKE 405 Query: 444 NHNIGDIIKVRITDVKISTLYG 465 + + V I+++K LYG Sbjct: 406 AGALHTLCDVLISELKDDVLYG 427 >gi|152999067|ref|YP_001364748.1| ribosomal protein S12 methylthiotransferase [Shewanella baltica OS185] gi|238066623|sp|A6WIP6|RIMO_SHEB8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|151363685|gb|ABS06685.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS185] Length = 472 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 138/454 (30%), Positives = 223/454 (49%), Gaps = 42/454 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ GYE NS D+ADL+++NTC + A E+ L +R Sbjct: 39 SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEES---LDAVREA 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E +I P V + GP +Y + K V Sbjct: 96 ----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV-----LKHVHKYVP 143 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 ++ + F L I G A+L I EGCD CTFC++P RG SR + Sbjct: 144 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPSLRGDLDSRPAGSI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSEIKGLV 261 +DEA++L+++GV EI ++ Q+ +A+ GK G K + L L ++ V Sbjct: 200 LDEAKRLVESGVQEILVVSQDTSAY-GKDKGGRTDFWNGMPVKQDITSLARQLGKMGAWV 258 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RL Y +P + A G +++PYL +P+Q S RILK M R + I R Sbjct: 259 RLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQR 315 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R + PD+ I S FIVGFPGET++DF+ +D + + + FKYS G + + E Sbjct: 316 WREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCFKYSEVDGAVANTIAEL 375 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ 436 + E+VK + R + +Q ++ ++++ VG+ +++LI+ +E G+ +P + Sbjct: 376 ISEDVKEDRYHRFMEVQAEISAERLA---RFVGRTLDILIDDVDEEGAIGRSFADAPEID 432 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +V + + G +++ RIT L+ E+V Sbjct: 433 GMVFINGETELEPGMLVRARITHSDEHDLWAEVV 466 >gi|188583573|ref|YP_001927018.1| ribosomal protein S12 methylthiotransferase [Methylobacterium populi BJ001] gi|238066397|sp|B1ZEV4|RIMO_METPB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|179347071|gb|ACB82483.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium populi BJ001] Length = 448 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 142/465 (30%), Positives = 218/465 (46%), Gaps = 56/465 (12%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE D AD++++NTC + A + Sbjct: 15 APRISFV-SLGCPKALVDSERILTHLRAEGYELSRRHDGADVVIVNTCGFLDSAKAESLQ 73 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +N R V+V GC+ A+ EEI + P + V GPQ Y + + Sbjct: 74 AIGEAMA-ENGR--------VIVTGCMG-AQPEEIREKYPNLLAVTGPQAYESVVAAVHE 123 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D F L I G A+L I EGC+ CTFC++P RG Sbjct: 124 AV---------PPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPSLRGDL 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR V+ EA KL+ GV E+ ++ Q+ +A WR + + + F DL Sbjct: 174 VSRPAGDVLREAEKLVKAGVKELLVVSQDTSAYGIDTRYATSPWRDREV---RARFYDLA 230 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L E+ VRL Y +P + A G + +PYL +P+Q S +LK M R Sbjct: 231 SELGELGAWVRLHYVYPYPHVDEVIPLMAEGKI---LPYLDMPLQHASPSVLKRMRR--P 285 Query: 312 AYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + RQ+ DRIR R P++AI S FIVGFPGET+ +F +D + + + F+Y Sbjct: 286 GNQERQL-DRIRRWREICPELAIRSTFIVGFPGETEAEFEELLDWIREARLERVGCFEYE 344 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ----VSFNDACVGQIIEVLIEKHGK- 423 P G P +++ V VKAER +++ E Q + A VG+ ++V+I++ G Sbjct: 345 PVKGAPANDLGLLVPPEVKAER----KRRFMEAQAGVSLKLQRAKVGKRLQVIIDEAGPG 400 Query: 424 -EKGKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465 +G+ +P + V + + GDI+ V+I L+G Sbjct: 401 GARGRSKADAPEIDGSVHVASRRPLRPGDIVTVKIERADAYDLHG 445 >gi|83648001|ref|YP_436436.1| 2-methylthioadenine synthetase [Hahella chejuensis KCTC 2396] gi|123726293|sp|Q2SBG3|RIMO_HAHCH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|83636044|gb|ABC32011.1| 2-methylthioadenine synthetase [Hahella chejuensis KCTC 2396] Length = 439 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 136/458 (29%), Positives = 219/458 (47%), Gaps = 50/458 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS R+ ++GYE S +DAD++++NTC + A ++ +G Sbjct: 12 SLGCPKNTVDSERILTQLRTEGYEISASYEDADVVLVNTCGFIDSAVQESLDAIGEA--- 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFGKRV 149 ++E G V+V GC+ E +++R P V V GP Y V Sbjct: 69 ----LRENGK--VIVTGCLGAKE--DVIREVHPKVLAVSGPHAY-------------TEV 107 Query: 150 VDTDYSVEDKFERLSIV----DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ + V K E V D G A+L I EGC+ CTFC++P RG +SR Sbjct: 108 MNQVHQVAPKPEYNPFVNLVPDTGVKLTPKHYAYLKISEGCNHRCTFCIIPSFRGDLVSR 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254 + V+ EA++L+ NGV E+ ++ Q+ +A W G+ + K +L L Sbjct: 168 PIGDVLGEAQRLVKNGVKELLVISQDTSAYGVDTKYRTGFWEGRPV---KTRMKELCDEL 224 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 + VRL Y +P D +I D +L PYL +P Q S +LK+M R A + Sbjct: 225 GRMGVWVRLHYVYPYPH--VDDVIPLMADGKIL-PYLDIPFQHASPSVLKNMRRPAHAEK 281 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 I + R PDI + S FIVGFPGET++DF+ ++ +++ + FKYSP G Sbjct: 282 VLHRIGKWREQCPDITLRSTFIVGFPGETEEDFQTLLNFLEEAQLDRVGCFKYSPVEGAT 341 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRS 432 + + + V+E VK ER + + S A +G+ ++V++++ +E + + Sbjct: 342 ANELPDPVEEVVKQERWERFMEVQQRISASRLQAKIGKRMDVIVDEVVEEGAVCRSKADA 401 Query: 433 PWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 P + V L+++ H GD++ V I D L+G V Sbjct: 402 PEIDGQVFLDNQTHLKPGDLVTVEIEDADEYDLWGRPV 439 >gi|319787551|ref|YP_004147026.1| MiaB-like tRNA modifying enzyme YliG [Pseudoxanthomonas suwonensis 11-1] gi|317466063|gb|ADV27795.1| MiaB-like tRNA modifying enzyme YliG [Pseudoxanthomonas suwonensis 11-1] Length = 455 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 215/462 (46%), Gaps = 46/462 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V + DDAD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILAQLRVEGYDIVPTYDDADVVVVNTCGFIDSAVAESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N +N + V+V GC+ + + E I + P V V GPQ Y + E + A Sbjct: 65 IGEAMN-ENGK--------VIVTGCLGK-KSEMIREQYPDVLSVSGPQDYTSVMEAVHAA 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K D F L + D G A+L I EGC+ C+FC++P RG + Sbjct: 115 LPPKH---------DPFLDL-VPDYGLKLTPHHYAYLKISEGCNHRCSFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT-FSDLL 251 SR + +V+ EA +L+ GV E+ ++ Q+ +A WRG+ E T L Sbjct: 165 SRPVDEVLREAERLVKGGVRELLVVSQDTSAYGVDVRYAPGTWRGR----EYATRMKALC 220 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 LSE+ RL Y +P + A G + +PYL +P Q S RILK M R Sbjct: 221 EGLSELDAWTRLHYVYPYPHVDDVIPLMAEGKV---LPYLDIPFQHASPRILKLMKRPGA 277 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + + I R R++ P + + S FIVGFPGET+ +F +D +D+ + +F YSP Sbjct: 278 VDKTLERIQRWRAICPGLTLRSTFIVGFPGETEQEFEELLDFLDEAQLDRVGAFAYSPVE 337 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429 G + + V E VK ERL ++ E + +A VG + L++ E + + Sbjct: 338 GASANALPGAVPEEVKQERLARFMERQGEISAARLEAKVGSVQRCLVDFVDGELAIARSM 397 Query: 430 GRSPWLQSVVLNSKNHNI----GDIIKVRITDVKISTLYGEL 467 +P + V + G+ + VRI LYGE+ Sbjct: 398 ADAPEIDGTVQIQDGRDAGLQPGEFVDVRIMGSDEHDLYGEV 439 >gi|254717992|ref|ZP_05179803.1| elongator protein 3 [Brucella sp. 83/13] gi|265982938|ref|ZP_06095673.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306839771|ref|ZP_07472572.1| MiaB-like tRNA modifying enzyme [Brucella sp. NF 2653] gi|264661530|gb|EEZ31791.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306405126|gb|EFM61404.1| MiaB-like tRNA modifying enzyme [Brucella sp. NF 2653] Length = 427 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 129/432 (29%), Positives = 212/432 (49%), Gaps = 34/432 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S M+ + G + ++ D I+ NTC + +A + + + R Sbjct: 7 TFGCRLNTYESEVMKREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144 +E D ++V GC AQ E + V++V+G + +Y LP+ + Sbjct: 61 -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDFGVN-Q 113 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 F K V+ V + + VD R R AF+ +Q GCD CTFC++PY RG S Sbjct: 114 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 168 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + VVD+ ++L+ NG E+ L G ++ ++ G L G + L+++ L RLR Sbjct: 169 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPGNLRLGKLVKTVLAQVPDLQRLR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ + D L++A LMP+LHL +Q+G D ILK M RRH + + +R+ Sbjct: 228 LSSIDSIEADDDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTVRA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +RPDI +D I GFP ET++ F+ ++ +V++ G F YSPR GTP + M QV Sbjct: 288 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 346 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + ER L+ + +A G +L+EK G V R+ ++ Sbjct: 347 EIVKERAARLRAEGDRAYEKHLNALYGTRQRLLVEKEG------VARTEGFTLAAVDQG- 399 Query: 445 HNIGDIIKVRIT 456 N G+II+ +T Sbjct: 400 -NAGEIIERIVT 410 >gi|153008261|ref|YP_001369476.1| MiaB-like tRNA modifying enzyme [Ochrobactrum anthropi ATCC 49188] gi|151560149|gb|ABS13647.1| MiaB-like tRNA modifying enzyme [Ochrobactrum anthropi ATCC 49188] Length = 427 Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 125/402 (31%), Positives = 203/402 (50%), Gaps = 30/402 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M+ + G + + D I+ NTC + +A + + + R Sbjct: 5 VVTFGCRLNTYESEVMKREADAAG---LGELKDG-AIIFNTCAVTAEAVRQARQAIRKAR 60 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142 +E + ++V GC AQ E + V++++G + +Y LP+ Sbjct: 61 -------RENPEARIIVTGCAAQTEADNFAAMDE-VDLILGNEEKLKSNSYRMLPDFGVN 112 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +F K V+ V + + VD R R AF+ +Q GCD CTFC++PY RG Sbjct: 113 -QFEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNS 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + VVD+ ++L+ NG E+ L G ++ ++ G L G + L+++ L R Sbjct: 167 RSVPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPGSLRLGKLVKTVLNQVPDLQR 225 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ + D L+ A + LMP+LHL +Q+G D ILK M RRH + + + + Sbjct: 226 LRLSSIDSIEADDDLMDAIANEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCETV 285 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RS+RPDI +D I GFP ET+D FR ++ +V++ G + F YS R GTP + M + Sbjct: 286 RSLRPDIVFGADIIAGFPTETEDMFRNSLKIVEECGLSHLHVFPYSAREGTPAARMPQVR 345 Query: 383 DENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 E VK A RL + E+ + A G + +L+EK G Sbjct: 346 REIVKERAARLRAEGDRAYEKHLG---ALNGTLQRLLVEKEG 384 >gi|144898728|emb|CAM75592.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1] Length = 470 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 128/460 (27%), Positives = 223/460 (48%), Gaps = 49/460 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + S GC + DS R+ ++GY+ +S D AD++V+NTC + A + +G Sbjct: 32 IVSLGCAKALVDSERILTRLRAEGYDISDSYDGADVVVVNTCGFLDSARAESLEAIGEAM 91 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERARFGK 147 N +N R V+V GC+ E +++R++ P V V GP Y ++ + + +A Sbjct: 92 N-ENGR--------VIVTGCMGGEE--DVIRKAHPDVLAVTGPHQYQQVVDAVHQAA--- 137 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 E + G + A+L I EGC+ C+FC++P RG SR + Sbjct: 138 -------PPESSPLHSLVPPEGLHLTPSHYAYLKISEGCNHRCSFCIIPGIRGDLASRPV 190 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSE 256 V++EA +L G+ EI ++ Q+ A W G+ + K +++ +L + Sbjct: 191 GDVLEEAERLAMAGIKEILVISQDTGAYGLDIKYAESPWHGRAV---KARLTEMAEALGD 247 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + RL Y +P + A G + +PYL +P Q S ++LK+M R ++ Sbjct: 248 LGVWTRLHYVYPYPHVDEVIPLMAAGKI---LPYLDIPFQHASPKVLKAMRR---PADHE 301 Query: 317 QIIDRI---RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 ++++RI R + PD+AI S FIVGFPGET++DF +D + K + FKY G Sbjct: 302 RLLERITGWREICPDLAIRSTFIVGFPGETEEDFEFLLDWLQKARIDRVGCFKYENVAGA 361 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431 +++ + VDE+VK ER L + R+ + +G+ IEV+I++ ++ G+ Sbjct: 362 AANHLADHVDEDVKEERYNRLMEVARQISDEISKGKIGKTIEVIIDEVDEDGAYGRSWAD 421 Query: 432 SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELVV 469 SP + V + + GD++ V + + L+G +V Sbjct: 422 SPEVDGCVYINHETDAQPGDVVMVEVEHAEDFDLWGRIVA 461 >gi|316969966|gb|EFV53984.1| putative radical SAM domain protein [Trichinella spiralis] Length = 405 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 121/400 (30%), Positives = 194/400 (48%), Gaps = 62/400 (15%) Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV 166 GC+A+ +V+++ GP Y LP L+ G++ V+T +S ++ + + V Sbjct: 16 GCMAKRSAHPSGSEVGLVDLIAGPDAYRDLPRLIASCETGQQAVNTIFSYDETYADIHPV 75 Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226 R ++ +I GC C++CVVP+TRG E SR GV E+T Sbjct: 76 -------RRDSSSQSIMRGCSNMCSYCVVPFTRGFEKSRP--------------GVKEVT 114 Query: 227 LLGQNVNAW-----RGKGLDGE--------------KC--TFSDLLYSLSEIKGLVRLRY 265 LLGQNVN++ +DG+ KC F++LL LS I VR+R+ Sbjct: 115 LLGQNVNSYCDADPSSTIVDGQLYLASGFVNVVKRKKCGIRFAELLQRLSNINSNVRIRF 174 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 T+ HP+D D ++ + + +HLP QSGS+ +L+ M+R +T Y ++++I+ Sbjct: 175 TSPHPKDFPDEVLDVIRNHPNICNSVHLPAQSGSNNVLQRMHRGYTVEAYMNLVEKIKDK 234 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDE 384 P + ++SDFI GF GETD+D T+ L+ + Y+ ++F YS R T + V Sbjct: 235 IPGVTLTSDFISGFCGETDEDHEQTVQLIKNVQYSYCYTFVYSMRERTKAHRRYCDDVPI 294 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSP------WLQS 437 +VK R LQ + R+ + N +G+ + VL+EK K + +GRS + +S Sbjct: 295 DVKKARSQQLQNEFRKGALILNRKFIGKTLTVLVEKESKRSTEFWMGRSDGNLKIIFPKS 354 Query: 438 VVLN------------SKNHNIGDIIKVRITDVKISTLYG 465 V+N +N IGD + V I D L G Sbjct: 355 SVVNCFDSSSSSSSIHQRNIQIGDFVDVDINDASSEVLKG 394 >gi|218781077|ref|YP_002432395.1| MiaB-like tRNA modifying enzyme YliG [Desulfatibacillum alkenivorans AK-01] gi|218762461|gb|ACL04927.1| MiaB-like tRNA modifying enzyme YliG [Desulfatibacillum alkenivorans AK-01] Length = 451 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 116/366 (31%), Positives = 184/366 (50%), Gaps = 21/366 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS + S G+ +A+ I++N+C A ++ + + + Sbjct: 15 SLGCVRNLVDSELILGALASGGFALTEDPAEAETIIINSCGFVRAAVDETIDVVLEMAHY 74 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR-FGKRV 149 K +EG +V+ GC+AQ G+E+ P +++VVGP + + ELL R F +V Sbjct: 75 K----EEGRCQRLVLCGCMAQRYGKELEEALPELDMVVGPGAHKDIVELLRRPTGFICQV 130 Query: 150 VDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D + + F R+ A++ I EGC CTFC++P RG SR L Sbjct: 131 PDPSTAPLQQASFPRICSTPH--------MAYIKISEGCPDRCTFCMIPQLRGAWRSRPL 182 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLR 264 +V+EA LI G EI L+ Q+ A+ GLD +K + LL SL ++G R R Sbjct: 183 DDIVEEAGNLIQWGAKEIILVAQDTTAY---GLDFDKQNRTSLDQLLSSLCRLEGETRFR 239 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + HP ++D L++ + Y LPVQ GSDRILK M R++T E ++ ++IR+ Sbjct: 240 FLYGHPNRVTDALLETAASQPRVCSYFDLPVQHGSDRILKMMGRKNTRDEMLRLFEKIRA 299 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD+A+ + +VGFPGET++DF ++ V + + F YS P + + V E Sbjct: 300 TVPDVALRTTALVGFPGETEEDFNQLVEFVQEARFDHLGVFAYSDAEEIPSHRLPDHVPE 359 Query: 385 NVKAER 390 + +R Sbjct: 360 DTAIKR 365 >gi|15669058|ref|NP_247862.1| hypothetical protein MJ_0867 [Methanocaldococcus jannaschii DSM 2661] gi|2501543|sp|Q58277|Y867_METJA RecName: Full=Putative methylthiotransferase MJ0867 gi|1591550|gb|AAB98872.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 427 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 131/457 (28%), Positives = 234/457 (51%), Gaps = 43/457 (9%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 Q ++ R +V+ YGC +N D+ +++ G+E VN++++AD+ ++NTC +R + + Sbjct: 7 QVVMDMRVYVEGYGCVLNTADTEIIKNSLKKHGFEVVNNLEEADIAIINTCVVRLETENR 66 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 + + ++NL VVVAGC+ +A L+ + + P+ ++ E+ Sbjct: 67 MIYRINELKNLGKE---------VVVAGCLPKA-----LKNKVKGFLHIYPREAHKAGEI 112 Query: 140 LERARFGKRVVDTDYS---VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 L K V+ Y +E+ + Y + +T L I EGC C++C+V Sbjct: 113 L------KNYVEKHYRMPYIEEDINKTLYKKLDYLKPSLITP-LPICEGCIGNCSYCIVK 165 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLS 255 RG IS ++V++A++LI+ G + + Q+ + G D G+ ++LL L+ Sbjct: 166 IARGGLISYPREKIVNKAKELINKGAKCLLITAQDTACY---GFDIGD--NLANLLNELT 220 Query: 256 EIKGLVRLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +IKG +R H ++ D LI+ + + V +LHLP+QSG D ILK M R +T Sbjct: 221 QIKGEFIMRVGMMHAKNAELILDELIEVYQNEKV-GKFLHLPLQSGDDEILKRMKRGYTV 279 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 E++ I++ R ++ ++D IVGFPGET++ F+ T++++ ++ KYS R G Sbjct: 280 DEFKDIVNEFRRKIKNLCFTTDIIVGFPGETEEQFQNTLEVLRELKPDYIHGAKYSQRKG 339 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 T + M +Q+D ++ R L K RE N +G+ ++VL+ GK G + Sbjct: 340 TEAAKM-KQIDTKIRKRRSEILDKLRRELSYLNNKKYIGKAMKVLVLDEGK------GYT 392 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + V+ + +G+ KV+ITD K L GEL++ Sbjct: 393 DNFK--VVKFEGGEVGEFRKVKITDAKTFGLKGELIL 427 >gi|228471734|ref|ZP_04056507.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] gi|228276887|gb|EEK15582.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] Length = 469 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 136/457 (29%), Positives = 220/457 (48%), Gaps = 35/457 (7%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAE 78 + I + V + GC NVYDS + + G E V+ D +++V+NTC I E Sbjct: 13 KSIKQNKINVVTLGCSKNVYDSEVLMGQLKASGKEVVHE-DKGNIVVINTCGFINNAKEE 71 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 + + L I+ + +EG V V GC+++ ++ + P V+ G LP Sbjct: 72 SINTILEYIQ-----KKEEGLVDKVFVMGCLSERYKPDLQKEIPDVDQYFGTT---ELPA 123 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 LL +V+ DY E ERL+ Y A+L + EGCD+ C+FC +P Sbjct: 124 LL-------KVLGADYKHELIGERLTTTPKNY-------AYLKVSEGCDRPCSFCAIPIM 169 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG S S+ +V EA KL GV E+ L+ Q+V + G L GE+ +DLL +L++++ Sbjct: 170 RGSHKSTSIENLVIEAEKLAKKGVKELILIAQDV-TYYGLDLYGER-KLADLLRALAKVE 227 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ +R + P ++ + + YL +P+Q +D ILKSM R T + Q+ Sbjct: 228 GIEWIRIHYAFPTGFPKDVLTVMKEEPKICKYLDIPLQHIADPILKSMKRGTTKAKTTQL 287 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++ R P+IAI + IVG+P ET++DF + V ++ + + F YS T + Sbjct: 288 LEDFRKAMPEIAIRTTLIVGYPNETEEDFEELKEFVRQMRFERLGCFTYSHEENTAAYEL 347 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW---- 434 + + E VK R + + + N A VG+ LI++ KE VGR+ + Sbjct: 348 EDNIPEEVKQRRAAEIMEIQSQISWELNQAKVGKTFRCLIDR--KEGQYFVGRTEYDSPD 405 Query: 435 -LQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468 V++++ H IGD + IT+ LYGE V Sbjct: 406 VDNEVLIDAAKHYVKIGDFADILITEATDFDLYGEPV 442 >gi|150025205|ref|YP_001296031.1| hypothetical protein FP1133 [Flavobacterium psychrophilum JIP02/86] gi|149771746|emb|CAL43220.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 442 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 124/420 (29%), Positives = 204/420 (48%), Gaps = 25/420 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F +G++RV+ + AD+ V+NTC + E A ++ + + L Sbjct: 11 TLGCKLNFSETSTIARNFQDEGFDRVDFEEIADMYVINTCSVTENADKQFKQIVKKAMKL 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + + GC AQ + EE L V++V+G +++ + + R Sbjct: 71 NDK-------AFIAAVGCYAQLKPEE-LAAVDGVDLVLGATEKFKITDYINDLSKNDR-- 120 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +S E E G Y+ AFL +Q+GCD CT+C +P RGI S +L V Sbjct: 121 SEVHSCE--IEEADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDALENV 178 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLRYTT 267 + A + G+ EI L G N+ + GKG G K TF DL+ +L ++KG+ RLR ++ Sbjct: 179 LKNASDISKQGIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLDLVQALDKVKGIERLRISS 237 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P + + I +P+ H+P+QSGS+ IL M RR+ Y + IR V P Sbjct: 238 IEPNLLKNETIDFVSKSRTFVPHFHIPLQSGSNEILGKMKRRYQREVYTDRVANIRQVMP 297 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 I D IVGFPGET+ F + + ++++ + F YS R T + M V NV+ Sbjct: 298 HACIGVDIIVGFPGETEAHFLESYNFLNEMDISYLHVFTYSERDNTEAATMDGVVPMNVR 357 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPWLQSVV 439 +R L+ +++ +F ++ +G VL E KE G + G ++PW +V Sbjct: 358 NKRSKMLRGLSVKKRRAFYESQLGTNRTVLFESENKE-GYIHGFTENYIKVKTPWNPELV 416 >gi|99082650|ref|YP_614804.1| MiaB-like tRNA modifying enzyme [Ruegeria sp. TM1040] gi|99038930|gb|ABF65542.1| MiaB-like tRNA modifying enzyme [Ruegeria sp. TM1040] Length = 421 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 116/380 (30%), Positives = 189/380 (49%), Gaps = 28/380 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ G E +V+NTC + +A K + ++R Sbjct: 9 TLGCRLNAYETEAMKELSRQAGLE--------GAVVVNTCAVTAEAVRKARQEIRKLR-- 58 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRLPELLERARF 145 ++ D ++V GC AQ E E S + V+ + P+T+ R+ + L+ Sbjct: 59 -----RDHPDAPIIVTGCAAQTEPETFAAMSEVTQVIGNTEKMQPETWQRMAKGLDFIGA 113 Query: 146 GKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++V VD SV + L +DG R R A++ +Q GCD CTFC++PY RG S Sbjct: 114 TEKVLVDDIMSVTETASHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRS 168 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 VVD+ ++L+D G E+ L G ++ +W G L ++ L + L RLR Sbjct: 169 VPAGVVVDQIKRLVDKGYNEVVLTGVDLTSW-GADLPASPKLGDLVMRILKLVPDLPRLR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ ++ + L++A LMP+LHL +Q G D ILK M RRH + + + R Sbjct: 228 ISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFTEEARK 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +RP + +D I GFP ET+ F ++ LV + F YS R GTP + + QV+ Sbjct: 288 LRPQMTFGADIIAGFPTETESHFENSLKLVTECDLTWLHVFPYSKREGTPAAKIPSQVNG 347 Query: 385 NVKAERLLCLQKKLREQQVS 404 NV ER L + + E Q++ Sbjct: 348 NVIKERAARL-RAIGEAQIA 366 >gi|300774217|ref|ZP_07084084.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC 33861] gi|300758896|gb|EFK55725.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC 33861] Length = 447 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 122/440 (27%), Positives = 225/440 (51%), Gaps = 16/440 (3%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 + I+ ++ + GC++N ++ + +F GYE AD+ V+NTC + + A +K Sbjct: 5 KIIMNKKVAFYTLGCKLNFSETSSIGRIFKDAGYETTAFNSQADVYVINTCSVTDHADKK 64 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 R + +K + + + GC AQ + +EI P V++V+G + + E Sbjct: 65 C-------RKVVKEALKYSPNAYITIVGCYAQLKPQEIAN-IPGVDMVLGAAEKFNIIEH 116 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + ++ + + +++ + +S G +R R FL +Q+GCD CTFC +P R Sbjct: 117 INDLTKQEKTIVHNAPIDETNQFVSAYSIG-DRTR---TFLKVQDGCDYSCTFCTIPLAR 172 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIK 258 G S + +V +A ++ +GV EI L G N+ + + DGE+ F DL+ +L E++ Sbjct: 173 GASRSGKIEDIVRQAEEIAASGVKEIVLTGVNIGDFGVR--DGERQDRFLDLVKALDEVE 230 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R+R ++ P +++ +I+ +P+ H+P+QSG+++IL M RR+ Y + Sbjct: 231 GIDRIRISSIEPNLLANDIIEFVAQSKRFVPHFHMPLQSGNNKILGMMRRRYKRELYAER 290 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + +I+S+ PD I D IVGFPGET +DF T + ++++ + F YS R T + M Sbjct: 291 VAKIKSLMPDCCIGVDVIVGFPGETREDFLDTYNFLNEMDISYLHVFTYSERENTIAAQM 350 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 V +++R L +++ +F + + +I +VL E KE G + G S V Sbjct: 351 EGAVPGAQRSDRSKMLHILSEKKRRAFYENQLSKIGDVLFESDEKE-GFMHGFSKNYVKV 409 Query: 439 VLNSKNHNIGDIIKVRITDV 458 + ++I+VR T + Sbjct: 410 RTAYDPLLVNEVIQVRFTSI 429 >gi|21231995|ref|NP_637912.1| hypothetical protein XCC2564 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767878|ref|YP_242640.1| ribosomal protein S12 methylthiotransferase [Xanthomonas campestris pv. campestris str. 8004] gi|81306145|sp|Q4UWF3|RIMO_XANC8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|81793516|sp|Q8P7P7|RIMO_XANCP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|21113730|gb|AAM41836.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573210|gb|AAY48620.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 457 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 138/460 (30%), Positives = 215/460 (46%), Gaps = 44/460 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V S D AD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N V+V GC+ + E+I P V V GPQ Y + E + A Sbjct: 65 IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D F L + D G A+L I EGC+ C+FC++P RG Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLA 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254 SR + +V+ EA +L+ GV E+ ++ Q+ +A+ G L + + D +Y L Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 SE+ RL Y +P + A G L +PYL +P Q S RILK M R + Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + + R +++ P+I + S FIVGFPGETD +F A ++ +D+ + +F YSP G Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFEALLEFLDQAQLDRVGAFAYSPVEGAS 340 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432 + + + V E +K ERL + E + +A +G + + L++ E V RS Sbjct: 341 ANALPDPVPEELKQERLARFMARQAEISAARLEAKIGSVQQCLVDL--IEDDIAVARSRA 398 Query: 433 --PWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGE 466 P + +V +GD++ V ITD L+G+ Sbjct: 399 DAPEIDGLVHIQNGGELKLKVGDLVDVEITDSDEHDLFGD 438 >gi|160873660|ref|YP_001552976.1| ribosomal protein S12 methylthiotransferase [Shewanella baltica OS195] gi|238066598|sp|A9KZF7|RIMO_SHEB9 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|160859182|gb|ABX47716.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS195] gi|315265891|gb|ADT92744.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS678] Length = 472 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 139/454 (30%), Positives = 223/454 (49%), Gaps = 42/454 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ GYE NS D+ADL+++NTC + A E+ L +R Sbjct: 39 SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEES---LDAVREA 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E +I P V + GP +Y + K V Sbjct: 96 ----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV-----LKHVHKYVP 143 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 ++ + F L I G A+L I EGCD CTFC++P RG SR + Sbjct: 144 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPSLRGDLDSRPAGSI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSEIKGLV 261 +DEA++L+++GV EI ++ Q+ +A+ GK G K + L L ++ V Sbjct: 200 LDEAKRLVESGVQEILVVSQDTSAY-GKDKGGRTDFWNGMPVKQDITSLARQLGKMGAWV 258 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RL Y +P D LI + +++PYL +P+Q S RILK M R + I R Sbjct: 259 RLHYIYPYP--WVDDLIPLMAE-GLILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQR 315 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R + PD+ I S FIVGFPGET++DF+ +D + + + FKYS G + + E Sbjct: 316 WREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCFKYSEVDGAVANTIAEL 375 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ 436 + E VK + R + +Q ++ ++++ VG+ +++LI+ +E G+ +P + Sbjct: 376 ISEEVKEDRYHRFMEVQAEISAERLA---RFVGRTLDILIDDVDEEGAIGRSFADAPEID 432 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +V + + G +++ RIT L+ E+V Sbjct: 433 GMVFINGETELEPGMLVRARITHSDEHDLWAEVV 466 >gi|146303440|ref|YP_001190756.1| RNA modification protein [Metallosphaera sedula DSM 5348] gi|145701690|gb|ABP94832.1| RNA modification enzyme, MiaB family [Metallosphaera sedula DSM 5348] Length = 418 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 136/448 (30%), Positives = 231/448 (51%), Gaps = 36/448 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + ++YGC +N D+ M + + +E VNS + AD++V+NTC +R + EK+ Sbjct: 2 RIYFETYGCALNKGDTYSMMTLLKGRNHEIVNSEEQADVLVINTCAVRMETEEKMKK--- 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI L + K +VVAGC+A AE ++ +P + ++GPQ+ + ++++ Sbjct: 59 RILELSKTGKK------LVVAGCLAGAEPGLVMSLAP-QSSLIGPQS---IGDVVKAVES 108 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +R+V E S++ + G+ + + I +GC C FC+ R S Sbjct: 109 RERIVSL------HGELPSVLPSVFE---GLISVIPIADGCAGSCNFCITKLARKELRSY 159 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 +V+ ARK I+ G EI L GQ+ A+ GLD G +DL+ +S ++G +R Sbjct: 160 PPRMIVETARKAIEKGAKEIELTGQDTAAY---GLDLGRDIRLADLVGEVSSLEGDFMVR 216 Query: 265 YTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 P R + D L D + + HLPVQSG+D++L++MNR++T E+R+I+ Sbjct: 217 VGMMTPELAMRQLDDLL--DAWDNPKVYKFFHLPVQSGNDQVLRAMNRKYTLDEFREIVR 274 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR P + I++D IVG PGE ++ F T++L+ ++ + + YS R T S M+ Sbjct: 275 EIRKRFPLVNITTDIIVGHPGEDENAFEDTLNLMKELRFERIHIAMYSLRPNT-RSAMMT 333 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 QV +K ERL E + VG+ ++VL+ ++GK+ K +GR+ L + + Sbjct: 334 QVPGPIKKERLKRAVTLYEELSREIHREYVGRKMKVLVLENGKDNTK-IGRT--LNYIPV 390 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 K+ ++G + ITD L G +V Sbjct: 391 IVKDADLGKWYEAEITDSSFFDLRGSIV 418 >gi|319898920|ref|YP_004159013.1| enzyme [Bartonella clarridgeiae 73] gi|319402884|emb|CBI76435.1| putative enzyme [Bartonella clarridgeiae 73] Length = 437 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 145/465 (31%), Positives = 218/465 (46%), Gaps = 47/465 (10%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +VP+ FV S GC + DS R+ S+GYE N ADL+++NTC Sbjct: 2 VVPRISFV-SLGCPKALVDSERIITRLRSEGYEISNKHQGADLVIVNTC----------- 49 Query: 82 SFLGRIRNLKNSRIKEG--GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 FL RN + I E + V+V GC+ AE IL+ P V + GPQ Y + + Sbjct: 50 GFLDSARNESLANIDEALKNNGKVIVTGCLG-AEPNVILQAYPNVIAITGPQDYESVIQA 108 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + A V D F L G R A+L I EGC C+FC++P R Sbjct: 109 VHTAV---------PPVHDPFIDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLR 158 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G S+ + V+ EA KL+ GV EI ++ Q+ A W+ + + K F Sbjct: 159 GNLTSQPIGDVLREAEKLVQAGVKEILVISQDTGAYGIDIKYAESIWQNRVI---KTKFL 215 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 DL L E+ VR+ Y +P + A G ++PYL +P Q S +L++M R Sbjct: 216 DLCRELGEMGIWVRIHYVYPYPHIDQAVELMAAGK---ILPYLDIPFQHASPTVLRNMKR 272 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + + I++ R + PD+ + S FIVGFPGET++DF ++ +++ +A FKY Sbjct: 273 PAHIEKTNRRIEKWREICPDLTLRSTFIVGFPGETNEDFNMLLEWLEEAKIERAGCFKYE 332 Query: 369 PRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK-EK 425 G +++ LE + E VK R K ++ +G+ ++VLI E GK K Sbjct: 333 AVKGAVANDLGLENIPEEVKENRWHRFMIKQQKISADLLKKKIGKRLQVLIDETQGKIAK 392 Query: 426 GKLVGRSPWLQSVVLNS--KNHNIGDIIKVRITDVKISTLYGELV 468 G+ SP + VV S K+ IG+ + V+I LYG +V Sbjct: 393 GRSKYDSPEIDGVVHISSRKSLRIGEFVTVKIEQSDSYDLYGTVV 437 >gi|238055328|sp|B0RR62|RIMO_XANCB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO Length = 457 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 138/460 (30%), Positives = 215/460 (46%), Gaps = 44/460 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V S D AD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N V+V GC+ + E+I P V V GPQ Y + E + A Sbjct: 65 IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D F L + D G A+L I EGC+ C+FC++P RG Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLA 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254 SR + +V+ EA +L+ GV E+ ++ Q+ +A+ G L + + D +Y L Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 SE+ RL Y +P + A G L +PYL +P Q S RILK M R + Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + + R +++ P+I + S FIVGFPGETD +F A ++ +D+ + +F YSP G Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFEALLEFLDQAQLDRVGAFAYSPVEGAS 340 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432 + + + V E +K ERL + E + +A +G + + L++ E V RS Sbjct: 341 ANALPDPVPEELKQERLARFMARQAEISAARLEAKIGTVQQCLVDL--IEDDIAVARSRA 398 Query: 433 --PWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGE 466 P + +V +GD++ V ITD L+G+ Sbjct: 399 DAPEIDGLVHIQNGGELKLKVGDLVDVEITDSDEHDLFGD 438 >gi|90421124|ref|ZP_01229026.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90334616|gb|EAS48396.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 440 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 125/397 (31%), Positives = 185/397 (46%), Gaps = 26/397 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S+GC++N Y++ M+ + G + D IV NTC + +A + + R R Sbjct: 7 SFGCRLNTYEAEIMKREAVAAGLD----ADPRGAIVFNTCAVTSEAVRQARKQIRRAR-- 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144 +E + +VV GC AQ E V+ V+G Y LP+ A Sbjct: 61 -----RENPEARIVVTGCAAQTEPGRFAEMGE-VDAVLGNDEKLTASAYRALPDFGVAAE 114 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 RV D E + ++G R R A + +Q GCD CTFCV+P+ RG S Sbjct: 115 EKVRVNDIMSVTETAGHMVDAIEG---RAR---AIVQVQNGCDHRCTFCVIPFGRGNSRS 168 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + VD+ ++L+ G E+ L G ++ +W G L G + L + L RLR Sbjct: 169 VPMGAAVDQVKRLVAAGYNEVVLSGVDMTSW-GADLPGAPKLGQLVQAILRHVPDLARLR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ + LI+A G LMP+LHL +Q+G D ILK M RRH+ + IR+ Sbjct: 228 LSSIDSVEADPALIEAIGSETRLMPHLHLSLQAGDDMILKRMKRRHSRDDAIGFCTDIRA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RPDI +D I GFP ETD F +M LV+ G F +SPR GTP + M + E Sbjct: 288 ARPDIVYGADIIAGFPTETDAMFENSMKLVEDCGLTHLHVFPFSPREGTPAARMPQLPRE 347 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 VK +R L+ + + + VG VL+E++ Sbjct: 348 VVK-DRATALRARGETAHRAHLASLVGTRQSVLVERN 383 >gi|330444543|ref|YP_004377529.1| MiaB-like tRNA modifying protein YliG [Chlamydophila pecorum E58] gi|328807653|gb|AEB41826.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Chlamydophila pecorum E58] Length = 461 Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 119/420 (28%), Positives = 202/420 (48%), Gaps = 25/420 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + GYE + + +AD ++LNTC + A ++ ++L R+ Sbjct: 24 SLGCSRNLVDSEVMLGILLKAGYEATDQLANADYLILNTCAFLKAARDEGKAYLQRLIQE 83 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K K +++ GC+ E+ P ++ ++G + E +E G+ + Sbjct: 84 KKKGAK------IILTGCMVSKHKSELEPWLPYIHYLLGSGDVEHILEAIESKEKGESIS 137 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y + R Y A+L + EGC K C FC++P +G S+ + QV Sbjct: 138 AKSYLEIGEVPRKLSTPKHY-------AYLKVSEGCKKQCAFCIIPAIKGKLRSKPVEQV 190 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI---KGLVRLRYTT 267 + E R L+ +G+ EI L+ Q++ + GK ++ S L Y L EI G LR Sbjct: 191 LKEVRLLLSSGIKEIILIAQDLGDY-GKDFSSDRS--SQLEYLLKEILKEPGDYWLRLLY 247 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P +++D +I L+PY+ +P+Q +DRILKSM R + + ++ ++R P Sbjct: 248 LYPDEVNDAIIDLMEHDPRLLPYVDIPLQHINDRILKSMRRTTSKAQILALLQKLRERIP 307 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + I S IVGFPGET ++F+ D + + F YS GTP + + Q+ E +K Sbjct: 308 HVYIRSSVIVGFPGETQEEFQELADFIQEGWVDNLGIFTYSQEPGTPAAALPNQISEKIK 367 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQS-VVLN 441 + RL L + + N +GQ +EV+++ + E + G+SP + V+LN Sbjct: 368 SSRLKILSQIQKSNVEHHNRNLLGQKVEVIVDGYHPESDLLLTARFYGQSPEVDPCVILN 427 >gi|163847415|ref|YP_001635459.1| MiaB-like tRNA modifying protein YliG [Chloroflexus aurantiacus J-10-fl] gi|222525264|ref|YP_002569735.1| MiaB-like tRNA modifying enzyme YliG [Chloroflexus sp. Y-400-fl] gi|238065320|sp|A9WDA3|RIMO_CHLAA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|163668704|gb|ABY35070.1| MiaB-like tRNA modifying enzyme YliG [Chloroflexus aurantiacus J-10-fl] gi|222449143|gb|ACM53409.1| MiaB-like tRNA modifying enzyme YliG [Chloroflexus sp. Y-400-fl] Length = 455 Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 133/460 (28%), Positives = 219/460 (47%), Gaps = 28/460 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++ + + GC N DS M+ + +QG++ V S ++AD+I++NTC A + LG Sbjct: 2 KYHIVTLGCPKNAVDSEGMDGLLSTQGHQAVASAEEADVIIVNTCSFIAAARAET---LG 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL---LER 142 ++ L R + G L + AGC+AQ+ E+ V+ +G Q + ++ L LER Sbjct: 59 VLKELAG-RKRPGQRL--IAAGCMAQSHPHEVAGVQG-VDATLGTQQWTQINALVGQLER 114 Query: 143 ARF----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGV----TAFLTIQEGCDKFCTFCV 194 G+ V + + S D + R +A+L I +GC+ C FC Sbjct: 115 PVIPLTPGQPVATIPLTTTTNGQPTSYADWRTTQIRRTHQTPSAYLKISDGCNLRCAFCT 174 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYS 253 +P +G S+ + V+ EA++L+ GV EI L+ Q++ + R GL T L Sbjct: 175 IPSFKGDMRSKPVGAVLAEAQELVAGGVREIVLVAQHLTDYGRDLGLKDGLATLLAELCQ 234 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 ++ + +RL Y ++P +S+ LI + YL +P+Q L+ M R Sbjct: 235 VTPPETWIRLMY--AYPHGISERLITTMASYPQICHYLDMPLQHAHPATLRRMRRPPDTD 292 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 +II +R+ PDIAI S FIVG+PGET +F A ++ + + +F+YS GT Sbjct: 293 RTLRIIAELRAAMPDIAIRSTFIVGYPGETTAEFHALLEFLQTAQLDRVGAFRYSREPGT 352 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE---KGKLVG 430 P + + +QV V R L + + + N VG+ I+VLIE +G +G Sbjct: 353 PAAELPDQVRPQVIERRWHELMRLQQTISYTRNQRWVGRTIKVLIEGNGTADDGSALSIG 412 Query: 431 RS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 RS P + V N+ G +I V++T L+GE Sbjct: 413 RSFRDAPEIDGQVFVWGNYPAGTMIPVQVTQATAYDLWGE 452 >gi|163853309|ref|YP_001641352.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium extorquens PA1] gi|238066393|sp|A9W8D2|RIMO_METEP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|163664914|gb|ABY32281.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium extorquens PA1] Length = 448 Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 137/458 (29%), Positives = 209/458 (45%), Gaps = 42/458 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE D AD++++NTC + A + + Sbjct: 15 APRISFV-SLGCPKALVDSERILTHLRAEGYELSRRHDGADVVIVNTCGFLDSAKAESLA 73 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +N R V+V GC+ A+ EEI + P + V GPQ Y + + Sbjct: 74 AIGEAMA-ENGR--------VIVTGCMG-AQPEEIREKYPNLLAVTGPQAYESVVAAVHE 123 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D F L I G A+L I EGC+ CTFC++P RG Sbjct: 124 AV---------PPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPSLRGDL 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251 +SR V+ EA KL+ GV E+ ++ Q+ +A+ G+D + F DL Sbjct: 174 VSRPAGDVLREAEKLVKAGVKELLVVSQDTSAY---GIDTRYASSPWQDREVRARFYDLA 230 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L E+ VRL Y +P + A G + +PYL +P+Q S +LK M R Sbjct: 231 KELGELGAWVRLHYVYPYPHVDEVIPLMAEGKI---LPYLDMPLQHASPSVLKRMRRPGN 287 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I R R + PD+AI S FIVGFPGETD +F +D + + + F+Y P Sbjct: 288 QEKQLDRIRRWREICPDLAIRSTFIVGFPGETDAEFEELLDWIREARLERVGCFEYEPVR 347 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLV 429 G +++ V VKAER + + A VG+ + V+I++ G +G+ Sbjct: 348 GATANDLGLLVPPEVKAERKRRFMEAQSHVSLRLQRAKVGKRLSVIIDEAGPTGARGRSK 407 Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465 +P + V + + GDI+ V+I L+G Sbjct: 408 ADAPEIDGSVHVTSRRPVRPGDIVTVKIERADAYDLHG 445 >gi|294625097|ref|ZP_06703743.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600606|gb|EFF44697.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 457 Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 139/460 (30%), Positives = 215/460 (46%), Gaps = 44/460 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V S D AD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N V+V GC+ + E+I P V V GPQ Y + E + A Sbjct: 65 IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D F L + D G A+L I EGC+ C+FC++P RG + Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254 SR + +V+ EA +L+ GV E+ ++ Q+ +A+ G L + + D LY L Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRLYQTRMKALCEGL 223 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 SE+ RL Y +P + A G L +PYL +P Q S RILK M R + Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIPLMAEGRL---LPYLDIPFQHASPRILKLMKRPGAVEK 280 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + + R +++ P+I + S FIVGFPGETD +F + +D +D+ + +F YSP G Sbjct: 281 TLERMQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAS 340 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432 + + + V E VK ERL K + ++ +G + + L++ E V RS Sbjct: 341 ANALPDPVPEEVKQERLARFMAKQAQISALRLESKIGSVQQCLVDV--IEDDIAVARSRA 398 Query: 433 --PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466 P + +V +GD++ V ITD L+G+ Sbjct: 399 DAPEIDGLVHIQNGGELGLKVGDLVDVEITDSDEHDLFGD 438 >gi|298377685|ref|ZP_06987636.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_19] gi|298265388|gb|EFI07050.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_19] Length = 444 Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 124/403 (30%), Positives = 199/403 (49%), Gaps = 22/403 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + QG +V + AD+ V+NTC + E A +K + RI Sbjct: 16 TLGCKLNFAETSTIGKLLAEQGVRKVRPGEKADICVVNTCSVTELADKKCRQAIRRIS-- 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---ELLERARFGK 147 K+ +VV GC AQ + EE+ V++V+G + + E LE+ G Sbjct: 74 -----KQHPGAFIVVTGCYAQLKPEEVSHIEG-VDLVLGAEQKLEILQYLENLEKKENGG 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 V+ + F D +R R FL +Q+GCD +C++C +P+ RG + ++ Sbjct: 128 AVIASQSKDIRSFSPSCSAD---DRTR---HFLKVQDGCDYYCSYCTIPFARGRSRNGTI 181 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++A+++ G EI L G N+ + GK D TF DL+ +L E+ G+VR R ++ Sbjct: 182 ASMVEQAQEVARKGGKEIVLTGVNIGDF-GKSTDE---TFIDLIRALDEVDGIVRYRISS 237 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D I P+ H+P+QSGSD +L+ M RR+ +R I++I+ V P Sbjct: 238 IEPNLITDEAIDFVAHSKRFAPHFHIPLQSGSDAVLQLMRRRYDTALFRHKIEKIKEVMP 297 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 I D IVG GETD+ F + + +Q F YS R GT + VD K Sbjct: 298 HAFIGVDVIVGTRGETDEYFEEARQFIGSLDISQLHVFSYSERPGTQALKIDHVVDPKTK 357 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 R L + +F +A +GQ VL E H K+ GK+ G Sbjct: 358 HARSQQLLDISDRKLHAFYEAHIGQEANVLFE-HTKKDGKMHG 399 >gi|157964499|ref|YP_001499323.1| MiaB-like tRNA modifying enzyme [Rickettsia massiliae MTU5] gi|157844275|gb|ABV84776.1| MiaB-like tRNA modifying enzyme [Rickettsia massiliae MTU5] Length = 421 Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 120/400 (30%), Positives = 199/400 (49%), Gaps = 37/400 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N+Y+S + G + V + NTC + KAAEK + R Sbjct: 14 VVTFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAV-TKAAEK------QAR 58 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143 K DL ++V GC AQ ++ P V+ V+G + YY++ + Sbjct: 59 QAIRKAKKNNPDLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLPNYYQITD----- 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K V+ SV++ L G +R AF+ +Q GCD FCTFC++PY RG Sbjct: 113 --AKITVNDIMSVKETASHLVSSFDGKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSR 165 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262 S ++ + + + L+ NG E+ G +V A+ G L G TF+ ++ L+ + L R Sbjct: 166 SVAIGAIAAQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGNP-TFAQMIKRVLNLVPELKR 223 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ D L + + +MP+ H+ +Q+G D ILK M RRH + ++ Sbjct: 224 LRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKL 283 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R++RP+++ +D I GFP ET + F T L+ + F YS R GTP + M QV Sbjct: 284 RAIRPEVSFGADIIAGFPTETHEMFENTRKLISEAELQYLHVFPYSEREGTPAARM-PQV 342 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 +N++ ER L+++ + Q F +GQ +E+L+E + Sbjct: 343 PKNIRKERAKILRQEGQNQLTEFFKKHIGQKVELLVENNN 382 >gi|254563231|ref|YP_003070326.1| AdoMet-dependent methyltransferase, UPF0004 family [Methylobacterium extorquens DM4] gi|254270509|emb|CAX26512.1| putative AdoMet-dependent methyltransferase, UPF0004 family [Methylobacterium extorquens DM4] Length = 448 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 137/458 (29%), Positives = 209/458 (45%), Gaps = 42/458 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE D AD++++NTC + A + + Sbjct: 15 APRISFV-SLGCPKALVDSERILTHLRAEGYELSRRHDGADVVIVNTCGFLDSAKAESLA 73 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +N R V+V GC+ A+ EEI + P + V GPQ Y + + Sbjct: 74 AIGEAMA-ENGR--------VIVTGCMG-AQPEEIREKYPNLLAVTGPQAYESVVAAVHE 123 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D F L I G A+L I EGC+ CTFC++P RG Sbjct: 124 AV---------PPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPSLRGDL 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251 +SR V+ EA KL+ GV E+ ++ Q+ +A+ G+D + F DL Sbjct: 174 VSRPAGDVLREAEKLVKAGVKELLVVSQDTSAY---GIDTRYASSPWQDREVRARFYDLA 230 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L E+ VRL Y +P + A G + +PYL +P+Q S +LK M R Sbjct: 231 KELGELGAWVRLHYVYPYPHVDEVIPLMAEGKI---LPYLDMPLQHASPSVLKRMRRPGN 287 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I R R + PD+AI S FIVGFPGETD +F +D + + + F+Y P Sbjct: 288 QEKQLDRIRRWREICPDLAIRSTFIVGFPGETDAEFEELLDWIREARLERVGCFEYEPVK 347 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLV 429 G +++ V VKAER + + A VG+ + V+I++ G +G+ Sbjct: 348 GATANDLGLLVPPEVKAERKRRFMEAQSHVSLRLQRAKVGKRLSVIIDEAGPTGARGRSK 407 Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465 +P + V + + GDI+ V+I L+G Sbjct: 408 ADAPEIDGSVHVTSRRPVRPGDIVTVKIERADAYDLHG 445 >gi|218296361|ref|ZP_03497104.1| MiaB-like tRNA modifying enzyme YliG [Thermus aquaticus Y51MC23] gi|218243155|gb|EED09686.1| MiaB-like tRNA modifying enzyme YliG [Thermus aquaticus Y51MC23] Length = 434 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 127/413 (30%), Positives = 206/413 (49%), Gaps = 39/413 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ + GYE S ++A+L+++NTC A E+ + +G Sbjct: 8 SLGCPKALVDSEQILSRLRALGYETSPSYEEAELVIVNTCGFITPAVEESLATIGEA--- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K G VVV GC+ A E I P V V GP R+ E+++ R Sbjct: 65 ----LKANGK--VVVTGCLG-ARPEVIREAHPQVLAVTGPGEVERVLEVVQAVLPAPR-- 115 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L ++ A++ + EGCD C+FC++P RG SR ++V Sbjct: 116 -------DPF--LDLIPPQVKLTPRHYAYIKLSEGCDHRCSFCIIPQLRGRLRSRDAAEV 166 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTF----------SDLLYSLSEIKG 259 + EA +L G E+ L+ Q+++A+ G+D G + +F DLL +++E+ Sbjct: 167 LAEAYRLAATGTKELLLIAQDLSAY---GVDLGHRESFFGDRLVRAHLKDLLENMAELGV 223 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +RL Y +P + A G + +PYL +P+Q S+RIL+ M R + + + Sbjct: 224 WIRLHYVYPYPHVKDLLPLMAEGKV---LPYLDVPLQHASERILRLMRRPGGYGSHLKTL 280 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R V P++A+ S FIVGFPGET++DF+ +D +++ + +F YSP G + + Sbjct: 281 KAWREVVPELAVRSTFIVGFPGETEEDFQILLDFLEEAELDRVGAFTYSPVEGAEANLLP 340 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 + V E VK ERL L + + N VG+++EVL+++ E G VGRS Sbjct: 341 DPVPEEVKEERLFRLMELQARISLRKNQGFVGRVLEVLVDEL-PEPGLAVGRS 392 >gi|170741411|ref|YP_001770066.1| ribosomal protein S12 methylthiotransferase [Methylobacterium sp. 4-46] gi|238066403|sp|B0UQE6|RIMO_METS4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|168195685|gb|ACA17632.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium sp. 4-46] Length = 441 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 138/459 (30%), Positives = 209/459 (45%), Gaps = 44/459 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE D AD++++NTC + A + Sbjct: 8 APKISFV-SLGCPKALVDSERILTHLRAEGYELARKHDGADVVIVNTCGFLDSAKAESLQ 66 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +N R V+V GC+ A+ EEI R P + V GPQ Y + + Sbjct: 67 AIGEAMA-ENGR--------VIVTGCMG-AQPEEIRERYPNLLAVTGPQAYESVVAAVHE 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D + L G R A+L I EGC+ CTFC++P RG Sbjct: 117 AV---------PPAHDPYLDLVPPQGVKLTPRHY-AYLKISEGCNNRCTFCIIPSLRGDL 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGE-KCTFSDL 250 +SR V+ EA KL+ GV E+ ++ Q+ +A WR DGE + F DL Sbjct: 167 VSRPAGDVLREAEKLVKAGVKELLVISQDTSAYGVDLRYAASPWR----DGEVRARFVDL 222 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L E+ VRL Y +P + A G + +PYL +P+Q S +L+ M R Sbjct: 223 ARALGELGVWVRLHYVYPYPHVDEVIPLMAEGKV---LPYLDMPLQHASPSVLRRMRRPA 279 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + + I RSV PD+AI S FIVGFPGET+ +F + + + + F Y P Sbjct: 280 NQEKMLERIRGWRSVCPDLAIRSTFIVGFPGETEAEFEELLSWLAEAKLERVGCFPYEPV 339 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKL 428 G + + V + VKAER + + A VG+ + V+I++ G +G+ Sbjct: 340 RGAAANEVAPPVPDEVKAERYRRFMEAQAAVSLRLQRAKVGKRLPVIIDEAGPTVARGRS 399 Query: 429 VGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465 +P + V + + GDI+ V+I L+G Sbjct: 400 KSDAPEIDGSVHVASRRPVRAGDIVTVKIERADTYDLHG 438 >gi|117924969|ref|YP_865586.1| MiaB-like tRNA modifying enzyme YliG [Magnetococcus sp. MC-1] gi|238066384|sp|A0L887|RIMO_MAGSM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|117608725|gb|ABK44180.1| SSU ribosomal protein S12P methylthiotransferase [Magnetococcus sp. MC-1] Length = 487 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 131/451 (29%), Positives = 216/451 (47%), Gaps = 27/451 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S GC N DS +M F +GY V +ADL+V+NTC A + + + Sbjct: 41 VISLGCSKNTVDSEQMLGRFVREGYLLVADPLEADLLVVNTCGFIADAERESRESIDEMA 100 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFG 146 ++K + ++V GC++Q G ++L P +++++G Y L LLE + Sbjct: 101 HIKQLYPHKK----LIVTGCLSQRYGAKLLEDHPQIDLLLGAGHYDTLIPLLEAKAPQTV 156 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V + D + RL I G +A++ I EGC+ CTFC++P RG SR+ Sbjct: 157 DHVTEPDAAASHDVPRL-ITTGES------SAYVKIAEGCNNSCTFCIIPKLRGPFRSRT 209 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L + E L D G E+ L+ Q+ W G+ L ++ + ++LL + +R Sbjct: 210 LDDIAAEVALLTDEGCHELILVSQDTT-WYGRDL-PQRSSLTELLQRILASCEAPWIRML 267 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + L++ D L+PY +P+Q ++LK M R RQ++ +R+ Sbjct: 268 YLYPTLVKKELLQLIAREDRLLPYFDIPLQHADSQVLKRMQRSERLETVRQLVKDVRASV 327 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD + S FIVGFPGE++ +F+ +D + + F YS GT ++ ++VD V Sbjct: 328 PDAILRSTFIVGFPGESEAEFQTLLDFIQESQLDWVGVFTYSDEQGTAAYDLPDKVDARV 387 Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439 R L+ LQ+ + ++ VG+I+ VL+E + +E VGR +P + V Sbjct: 388 AEARRDQLMALQQPITSARLQ---RWVGEIVAVLVESYDEEHACFVGRFWAQAPEVDGQV 444 Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYGELV 468 L N + G + V IT V LYG+L+ Sbjct: 445 LIQCNEELEMGIFVPVAITQVLGYDLYGDLL 475 >gi|313157725|gb|EFR57136.1| tRNA methylthiotransferase YqeV [Alistipes sp. HGB5] Length = 432 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 135/435 (31%), Positives = 211/435 (48%), Gaps = 25/435 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + GC++N +S + F G+ RV +AD+ V+N+C + E A +K Sbjct: 4 RRVNFHTLGCKLNFSESSTLAREFERGGFVRVAPDAEADICVINSCSVTEHADKKC---- 59 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT----YYRLPELL 140 RNL + ++ V GC AQ + +EI V++V+ Y R+ EL Sbjct: 60 ---RNLIRKLHRRNPGAIIAVTGCYAQLKPQEIAAIEG-VDIVLSNNDKGMLYKRVVELS 115 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + R DT+ S+ F S D R R AFL +Q+GCD C +C + Y RG Sbjct: 116 GKGRAQIYSCDTE-SLTSFFAAFSSGD----RTR---AFLKVQDGCDYKCAYCTIHYARG 167 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 + ++ +V EAR++ G EI + G N + G+ GE+ F DLL +L+E++G+ Sbjct: 168 GSRNMPIADLVAEARQIAAAGQKEIVITGINTGDF-GR-TTGER--FIDLLRALNEVEGI 223 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R R ++ P ++D +I + H+P+QSGSD+IL M RR+T + I Sbjct: 224 ERYRISSIEPNLLTDEIIAFCAASPKFQHHFHIPLQSGSDKILGLMRRRYTTARFADRIA 283 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R++ PD I D IVGFPGET++DFR T D ++ + A F +S R GTP +M Sbjct: 284 AVRALMPDAFIGIDVIVGFPGETEEDFRTTYDFLEGLKPAFLHIFPFSERPGTPAVDMPG 343 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 +V +V R+ L++ +F VG VL E + G + G + + V Sbjct: 344 KVQPSVATRRVAELEELCGRLHGAFCAKAVGSEDTVLFESTLR-GGMMFGYTGSYRRVKA 402 Query: 441 NSKNHNIGDIIKVRI 455 I I +VR Sbjct: 403 PYDRTRINAICRVRF 417 >gi|229586694|ref|YP_002845195.1| MiaB-like tRNA modifying enzyme [Rickettsia africae ESF-5] gi|228021744|gb|ACP53452.1| MiaB-like tRNA modifying enzyme [Rickettsia africae ESF-5] Length = 421 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 121/400 (30%), Positives = 201/400 (50%), Gaps = 37/400 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N+Y+S + G + V + NTC + KAAEK + R Sbjct: 14 VVTFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAV-TKAAEK------QAR 58 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143 K DL ++V GC AQ ++ P V+ V+G + YY++ + Sbjct: 59 QAIRKAKKNNPDLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLPNYYQITD----- 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K V+ SV++ L V + R AF+ +Q GCD FCTFC++PY RG Sbjct: 113 --AKITVNDIMSVKETASHL--VSSFDCKSR---AFIQVQNGCDHFCTFCIIPYGRGKSR 165 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262 S ++ +V++ + L+ NG E+ G +V A+ G L G TF+ ++ L+ + L R Sbjct: 166 SVAIGAIVEQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPELKR 223 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ D L + + +MP+ H+ +Q+G D ILK M RRH + ++ Sbjct: 224 LRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRASVIEFCRKL 283 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R++RP+++ +D I GFP ET + F T L+ + F YS R GTP + M QV Sbjct: 284 RAIRPEVSFGADIIAGFPTETPEMFENTRQLISEAELQYLHVFPYSEREGTPAARM-PQV 342 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 +N++ ER L+++ + Q F +GQ +E+L+E + Sbjct: 343 PKNIRKERAAILRQEGQNQLTEFFKKHIGQKVELLVENNN 382 >gi|188990993|ref|YP_001903003.1| MiaB-family RNA modification enzyme, probable [Xanthomonas campestris pv. campestris str. B100] gi|167732753|emb|CAP50947.1| MiaB-family RNA modification enzyme, probable [Xanthomonas campestris pv. campestris] Length = 622 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 143/483 (29%), Positives = 224/483 (46%), Gaps = 50/483 (10%) Query: 7 LIGVAHMVSQIVDQC------IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD 60 +IG+A + V Q + P+ FV S GC + DS R+ +GY+ V S D Sbjct: 148 IIGLAQAPGRSVSQAPASMSQLNPKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYD 206 Query: 61 DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120 AD++V+NTC + A + +G N V+V GC+ + E+I Sbjct: 207 AADVVVVNTCGFIDSAVTESLDAIGEAMNANGK---------VIVTGCLGK-RPEQIREA 256 Query: 121 SPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFL 180 P V V GPQ Y + E + A + D F L + D G A+L Sbjct: 257 YPQVLAVSGPQDYQSVMEAVHAALPPR---------HDPFVDL-VPDYGIKLTPRHYAYL 306 Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240 I EGC+ C+FC++P RG SR + +V+ EA +L+ GV E+ ++ Q+ +A+ G L Sbjct: 307 KISEGCNHRCSFCIIPSMRGDLASRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDL 365 Query: 241 DGEKCTFSDLLY---------SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 + + D +Y LSE+ RL Y +P + A G L +PYL Sbjct: 366 KYAERPWRDRMYQTRMKALCEGLSELGVWTRLHYVYPYPHVDDVIPLMAEGKL---LPYL 422 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 +P Q S RILK M R + + + R +++ P+I + S FIVGFPGETD +F A + Sbjct: 423 DIPFQHASPRILKLMKRPGAVEKTLERVQRWKAMCPEITVRSTFIVGFPGETDAEFEALL 482 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411 + +D+ + +F YSP G + + + V E +K ERL + E + +A +G Sbjct: 483 EFLDQAQLDRVGAFAYSPVEGASANALPDPVPEELKQERLARFMARQAEISAARLEAKIG 542 Query: 412 QIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNH----NIGDIIKVRITDVKISTL 463 + + L++ E V RS P + +V +GD++ V ITD L Sbjct: 543 TVQQCLVDL--IEDDIAVARSRADAPEIDGLVHIQNGGELKLKVGDLVDVEITDSDEHDL 600 Query: 464 YGE 466 +G+ Sbjct: 601 FGD 603 >gi|269215615|ref|ZP_06159469.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC 700122] gi|269131102|gb|EEZ62177.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC 700122] Length = 423 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 137/434 (31%), Positives = 204/434 (47%), Gaps = 30/434 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF + + GC++N +S + M G + ADLIV+NTC + +A +K Sbjct: 12 RFSIVNLGCKVNRVESDEVASMLLGSGGIEADP-SSADLIVVNTCTVTGEAEKKT----- 65 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R ++ D VVV GC + + V+VV + L + Sbjct: 66 --RKAVRHALRASDDARVVVTGCASAIDPATYEAMGERVDVVPRLSLHDYLTGIGAHGAQ 123 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT-----IQEGCDKFCTFCVVPYTRG 200 G R + + D+ LS D R G +F T IQ+GCD CTFC+V RG Sbjct: 124 GDREPASCAAKADRSFALS--DAAAARVGG--SFPTRVPVKIQDGCDNACTFCIVHVARG 179 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR + V E L GV EI L G N+ +R D T ++ L S + Sbjct: 180 RSRSRDAAAVEREVSALGAAGVREIVLSGINLGRYRCG--DAGLATLAERLLSCAP---E 234 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 RLR ++ P+ + D LI+ + +LHLP+QSGS RIL+ M R ++A + ++ Sbjct: 235 TRLRISSIEPQSVDDALIEVMATSGGRVCRHLHLPLQSGSTRILRQMARPYSAQRFAGLV 294 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 DR+R+ P IA+S+D IVGFPGETD DF +T D+V G+++ F+YSPR GTP + Sbjct: 295 DRLRARIPGIALSTDVIVGFPGETDADFASTCDVVRTCGFSKLHVFRYSPRRGTPAAARG 354 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 +QV VK ER L+ E + + G + L+E H + + P + Sbjct: 355 DQVPSAVKIERAHMLEALGAELRAQDRASRAGTVELALVESHARATTESYYGVPAPEGA- 413 Query: 440 LNSKNHNIGDIIKV 453 N GD+++V Sbjct: 414 ------NAGDLVEV 421 >gi|291548154|emb|CBL21262.1| RNA modification enzyme, MiaB family [Ruminococcus sp. SR1/5] Length = 375 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 108/366 (29%), Positives = 204/366 (55%), Gaps = 21/366 (5%) Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-----ERARFGKRVVDTDY 154 + +VV GC Q GE+ L + +++V+G + E L ++ G V+ + Sbjct: 4 EAIVVATGCYVQTGGEK-LEKDEAIDLVLGNNQKINIVEALAEYAEDKPGHGSHVIKINQ 62 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 + E +E LSI + V A++ +Q+GC++FCT+C++PY RG SR++ V+ E Sbjct: 63 TKE--YEELSIDHTAEH----VRAYIKVQDGCNQFCTYCIIPYARGRVRSRNIESVLKEV 116 Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274 R L + G E+ L G +++++ + +K T L+ ++ EI+G+ R+R + P ++ Sbjct: 117 RALAEKGYKEVVLTGIHLSSYGVDFPEEKKETLLSLIRAVHEIEGIRRIRLGSLEPGIVT 176 Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334 + L + P+ HL +QSG D L+ MNRR+ + EYR+ + +R V + A+++D Sbjct: 177 REFAEGIAALPKVCPHFHLSLQSGCDETLERMNRRYRSGEYRERCELLREVYGNPALTTD 236 Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVKAERL 391 IVGFP E++++FR + D VD I + + FKYS R GT + M L + +++ ++E++ Sbjct: 237 VIVGFPQESEEEFRKSYDFVDSIRFYETHIFKYSRRQGTKAAAMDGQLTEAEKSFRSEKM 296 Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRS-PWLQSVVLNSKNHNIG 448 + L + + + +G+ +EVLIE+ + G+ +G S ++++ V S+ + + Sbjct: 297 IELHHR---HAGDYEKSMLGKNLEVLIEEEYTKDGRTWYLGHSREYIKTAVPKSEAYGVN 353 Query: 449 DIIKVR 454 DI+ V+ Sbjct: 354 DIVIVK 359 >gi|87312136|ref|ZP_01094241.1| hypothetical protein DSM3645_25704 [Blastopirellula marina DSM 3645] gi|87285164|gb|EAQ77093.1| hypothetical protein DSM3645_25704 [Blastopirellula marina DSM 3645] Length = 427 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 132/430 (30%), Positives = 212/430 (49%), Gaps = 28/430 (6%) Query: 52 GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ 111 GY V AD +V+NTC E A + ++ + + LK ++G VVV GC+A+ Sbjct: 9 GYSLVQEPVGADFVVVNTCGFIEAARTESFAAIHEMLELK----RQGKIRGVVVCGCLAE 64 Query: 112 AEGEEILRRSPIVNVVVG-------PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLS 164 + E++L P ++ VVG + RL L+ R R ++ED+ RL Sbjct: 65 RQKEQLLLDCPEIDQVVGVFGREEITKVADRLVGNLDEQREVFRPAPV-RALEDR-HRLR 122 Query: 165 IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224 I + A+L + EGCD+ CTFC +P RG ++ + +V+ EA +L +GV E Sbjct: 123 ITPKHF-------AYLKVSEGCDRLCTFCAIPKMRGKHATKPMEEVIREAEELAADGVRE 175 Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284 + ++ Q+ + G L GE + LL L+++KG +R +P + D L++ D Sbjct: 176 LIVVAQDTTYY-GLDLYGEP-RLAPLLKQLNDVKGFDWIRLMYFYPMYIDDHLLQTIADA 233 Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344 D ++PY+ +P+Q +D +L+ M+RR T I R+R PD+AI + FI GFPGETD Sbjct: 234 DKIVPYIDMPLQHINDTMLRRMSRRVTRSSTEDTIARMRKFIPDLAIRTTFITGFPGETD 293 Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404 + F V + + + F YS GTP + + + E V AER L + +E Sbjct: 294 EQFEELCGFVAEQKFERVGVFTYSREEGTPAVKLPDALPEEVAAERRDRLMEVQQEVVFD 353 Query: 405 FNDACVGQIIEVLIEKH-GKEKGKLVGRS----PWLQSVVLNS-KNHNIGDIIKVRITDV 458 NDA VG ++V++++ + +GR+ P + VV S + G I+K I Sbjct: 354 RNDALVGTTMDVILDQQVPGQATAWIGRTKHDAPDVDCVVFVSGEGLAAGQIVKTEIVAT 413 Query: 459 KISTLYGELV 468 L G V Sbjct: 414 HEYDLIGAAV 423 >gi|163756447|ref|ZP_02163560.1| possible 2-methylthioadenine synthetase [Kordia algicida OT-1] gi|161323555|gb|EDP94891.1| possible 2-methylthioadenine synthetase [Kordia algicida OT-1] Length = 450 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 128/424 (30%), Positives = 216/424 (50%), Gaps = 28/424 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F +G+E+V+ + AD+ V+NTC + E A + R + + Sbjct: 11 TLGCKLNFSETSTIARNFQEEGFEKVDFSEHADMYVINTCSVTENADK-------RFKTI 63 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP----ELLERARFG 146 K D V GC AQ + EE L V++V+G ++L +LL R Sbjct: 64 VKQAQKVNPDAFVAAVGCYAQLKPEE-LAAVDGVDLVLGATEKFKLTSYINDLLSRPERS 122 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + + +S E E G Y+ AFL +Q+GCD CT+C +P RGI S + Sbjct: 123 RGIGEV-HSCE--IEEADFYVGSYSFGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDT 179 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRL 263 L V+ A+++ + + EI L G N+ + GKG G K TF +L+ +L ++G+ RL Sbjct: 180 LENVLKNAKEISEKNIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVQALDTVEGIERL 238 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ P + + I + +P+ H+P+QSGS+ +L+ M RR+ Y + +I+ Sbjct: 239 RISSIEPNLLKNETIDFVSKSNTFVPHFHIPLQSGSNTLLRLMRRRYMRELYVDRVRKIK 298 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 V PD I D IVGFPGETD+ F T + + ++ + F YS R T + M V Sbjct: 299 EVMPDACIGVDVIVGFPGETDEIFLETYNFLTELDISYLHVFTYSERENTVAAEMEGVVP 358 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPWL 435 +NV+ +R L+ +++ +F ++ +G+ VL E KE G + G ++PW Sbjct: 359 QNVRKKRSKMLRGLSVKKRRAFYESQLGKTKTVLFEGENKE-GYIHGFTENYVKVKAPWN 417 Query: 436 QSVV 439 ++V Sbjct: 418 PALV 421 >gi|37675741|ref|NP_936137.1| 2-methylthioadenine synthetase [Vibrio vulnificus YJ016] gi|320157907|ref|YP_004190285.1| ribosomal protein S12p Asp88, methylthiotransferase [Vibrio vulnificus MO6-24/O] gi|81756249|sp|Q7MG88|RIMO_VIBVY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|37200280|dbj|BAC96107.1| 2-methylthioadenine synthetase [Vibrio vulnificus YJ016] gi|319933219|gb|ADV88082.1| ribosomal protein S12p Asp88 methylthiotransferase [Vibrio vulnificus MO6-24/O] Length = 469 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 134/456 (29%), Positives = 224/456 (49%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GYE VNS D+D++++NTC + A ++ +G Sbjct: 40 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEA--- 96 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI P V + GP Y + E + + F + Sbjct: 97 ----LKENGK--VIVTGCLGARE-DEIREVHPGVLGITGPHAYENVLEHVHQ--FAPK-- 145 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F L + D G A+L I EGC+ CTFC++P RG +SR + ++ Sbjct: 146 ----PEHNPFTSL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEI 200 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGL--------- 260 + EA +L + GV E+ ++ Q+ +A+ G+D + F++ IK L Sbjct: 201 LSEAERLKNAGVKELLVISQDTSAY---GVDSKHSLGFANGSPVRQNIKALSEELGKMGI 257 Query: 261 -VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S +LK+M R A I Sbjct: 258 WVRLHYVYPYPHVDDLIPLMAEGKI---LPYLDIPFQHASPNVLKAMKRPGRAERTLDQI 314 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGETD+DF ++ + + + FKYSP G +++ Sbjct: 315 KKWREICPELVIRSTFIVGFPGETDEDFEMLLEWLKEAQLDRVGCFKYSPVEGAAANDID 374 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 +Q+ E VK ER + +Q+++ ++ +G ++V+I++ +E G+ +P Sbjct: 375 DQISEEVKQERFERFMLVQQEISAAKLQKR---IGSTMKVIIDEVDEEGAIGRTYADAPE 431 Query: 435 LQSVV-LNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + +V LN + G+++ V I L+G LV Sbjct: 432 IDGLVYLNGETSLKAGELVDVLIEHADEYDLWGSLV 467 >gi|240140720|ref|YP_002965200.1| putative AdoMet-dependent methyltransferase, UPF0004 family [Methylobacterium extorquens AM1] gi|240010697|gb|ACS41923.1| putative AdoMet-dependent methyltransferase, UPF0004 family [Methylobacterium extorquens AM1] Length = 448 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 137/458 (29%), Positives = 209/458 (45%), Gaps = 42/458 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE D AD++++NTC + A + + Sbjct: 15 APRISFV-SLGCPKALVDSERILTHLRAEGYELSRRHDGADVVIVNTCGFLDSAKAESLA 73 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +N R V+V GC+ A+ EEI + P + V GPQ Y + + Sbjct: 74 AIGEAMA-ENGR--------VIVTGCMG-AQPEEIREKYPNLLAVTGPQAYESVVAAVHE 123 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D F L I G A+L I EGC+ CTFC++P RG Sbjct: 124 AV---------PPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPSLRGDL 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251 +SR V+ EA KL+ GV E+ ++ Q+ +A+ G+D + F DL Sbjct: 174 VSRPAGDVLREAEKLVKAGVKELLVVSQDTSAY---GIDTRYASSPWQDREVRARFYDLA 230 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L E+ VRL Y +P + A G + +PYL +P+Q S +LK M R Sbjct: 231 KELGELGAWVRLHYVYPYPHVDEVIPLMAEGKI---LPYLDMPLQHASPSVLKRMRRPGN 287 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I R R + PD+AI S FIVGFPGETD +F +D + + + F+Y P Sbjct: 288 QEKQLDRIRRWREICPDLAIRSTFIVGFPGETDAEFEELLDWIREARLERVGCFEYEPVK 347 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLV 429 G +++ V VKAER + + A VG+ + V+I++ G +G+ Sbjct: 348 GATANDLGLLVPPEVKAERKRRFMEAQSHVSLRLQRAKVGKRLSVIIDEAGPTVARGRSK 407 Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465 +P + V + + GDI+ V+I L+G Sbjct: 408 ADAPEIDGSVHVTSRRPVRPGDIVTVKIERADAYDLHG 445 >gi|315497313|ref|YP_004086117.1| miab-like tRNA modifying enzyme [Asticcacaulis excentricus CB 48] gi|315415325|gb|ADU11966.1| MiaB-like tRNA modifying enzyme [Asticcacaulis excentricus CB 48] Length = 443 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 117/394 (29%), Positives = 194/394 (49%), Gaps = 23/394 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S ++ + G +D A I+ NTC + +A + + R R Sbjct: 29 VVTFGCRLNSYESEQIRKVAAEDG------LDGA--IIFNTCAVTGEAVRQARQAIRRAR 80 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 KE D ++V GC AQ + + V+ ++G + + Sbjct: 81 -------KENPDARLIVTGCAAQTDPDTFATMGE-VDFIIGNGDKAKAGAYALTPDSARI 132 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V+ +SV + L +DG +R R A++ +Q GCD CTFC++PY RG S + Sbjct: 133 AVNDIFSVRETAGHL--IDGLKDRAR---AYVEVQNGCDHRCTFCIIPYGRGNSRSAAAG 187 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 VV + +L+ G E+ L G ++ +W G L G+ + L + L RLR ++ Sbjct: 188 DVVGQISRLVAEGYNEVVLTGVDLTSW-GNDLPGQPQLGHLVARILKHVPNLKRLRLSSI 246 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++ D L++ + + L PYLHL +Q G D ILK M RRH + +++ ++R +RPD Sbjct: 247 DAAEIDDTLLRLFAEEERLAPYLHLSLQHGDDLILKRMKRRHLRADAIRLVQKVRVLRPD 306 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A +D I GFP ET++ F ++ LVD+ A F YSPR TP + + Q+ + Sbjct: 307 VAFGADMIAGFPTETEEHFANSLALVDECDLAFLHVFPYSPRPQTPAAK-IPQLPRALIK 365 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 +R L+ K E D VG+ + ++EK G Sbjct: 366 DRAARLRGKAVEALTRHLDKQVGRDVSAVVEKPG 399 >gi|189501679|ref|YP_001957396.1| hypothetical protein Aasi_0223 [Candidatus Amoebophilus asiaticus 5a2] gi|189497120|gb|ACE05667.1| hypothetical protein Aasi_0223 [Candidatus Amoebophilus asiaticus 5a2] Length = 441 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 114/400 (28%), Positives = 204/400 (51%), Gaps = 21/400 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + GC++N ++ + +F QGY++V D+ + ++NTC + E+A +K Sbjct: 2 KRVAFYTLGCKLNFSETSAVGRLFTEQGYQKVEFEDNPHIFIINTCSVTEQADKKC---- 57 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + +K + +++ GC AQ + EEI P V+VV+G ++L E++ + Sbjct: 58 ---RRIVKDALKISPEAFIIIMGCYAQLKPEEIAS-IPGVDVVLGAHEKFKLLEII--SS 111 Query: 145 FGKRVVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 F K+ Y S + +R R FL +Q+GC+ C+FC +P RG Sbjct: 112 FDKKGQAEVYVSCIKDVNTFTHAHSIGDRTR---TFLKVQDGCNYHCSFCTIPLARGKSR 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S ++ +V++ARK+ D G+ EI L G N+ + G + + F L+ +L ++ + R Sbjct: 169 SDTIESIVEQARKIADQGIKEIVLTGVNIGDY-GIIDNRRQTNFLSLIEALEKVVDIKRF 227 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ P ++D +I+ +P+ H+P+QSG++ ILK M RR+ Y + + I+ Sbjct: 228 RISSIEPNLLTDEIIQFVAQSGRFVPHFHIPLQSGNNDILKLMRRRYQRELYVERVAHIK 287 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLE 380 + P I D IVGFPGET++ F T ++++ + F YS R T ++ Sbjct: 288 KLMPHCCIGVDVIVGFPGETEEKFLDTYQFLNELDISYLHVFPYSERQNTQAITLEGIVS 347 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 Q + N +A L L K +Q F + +G+ +E+L E+ Sbjct: 348 QKERNRRASMLRILSDK---KQRYFYEQNLGKTVEILFEQ 384 >gi|114798740|ref|YP_760652.1| 30S ribosomal protein S12 methylthiotransferase [Hyphomonas neptunium ATCC 15444] gi|122942374|sp|Q0C0U1|RIMO_HYPNA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|114738914|gb|ABI77039.1| RNA modification enzyme, MiaB family [Hyphomonas neptunium ATCC 15444] Length = 451 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 133/452 (29%), Positives = 206/452 (45%), Gaps = 43/452 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY+ ADL+++NTC + A ++ + +G Sbjct: 23 SLGCPKALVDSERIITRLRAEGYQIAPDYAGADLVLVNTCGFLDSARDESLAAIGEA--- 79 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I+ G V+V GC+ AE E I R P V V GP Y + + V Sbjct: 80 ----IEANGK--VIVTGCLG-AEPEVIQRAHPKVLAVTGPHQYEAVMD----------AV 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 T + + + G A+L I EGC+ C+FC++P RG SR + V Sbjct: 123 HTHLTPPHNPHMDLVPESGLRLTPRHYAYLKISEGCNNRCSFCIIPKLRGDLASRPIHHV 182 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA KL+ GV E+ ++ Q+ +A WRG + F DL L + Sbjct: 183 LMEAEKLVAAGVKELLVISQDTSAYGLDIRYKPETWRGSEYE---TRFLDLAKGLGSLGV 239 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 R+ Y +P + + A G ++ PYL +P Q S +LK+M R + I Sbjct: 240 WTRMHYVYPYPHVDNVIPLMAEG---LITPYLDIPFQHASAPVLKAMKRPGNQDKVLGRI 296 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R PD+AI S FIVGFPGET++DF+ +D + + +A FKY + Sbjct: 297 AKWREQVPDLAIRSTFIVGFPGETEEDFQILLDFIREAKIDRAGCFKYENVAHAESGKLE 356 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435 V E VK ER E + +A VG+ ++V+I+ G+E G+++ R+ P + Sbjct: 357 GHVPEEVKEERWHRFMTAQAEVSAARAEAQVGRTLDVIIDGPGEEAGEMIARTQADAPEV 416 Query: 436 QSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465 +VV N+ + GDII+ IT LY Sbjct: 417 DAVVYLENAAHLKAGDIIRAEITGADDYDLYA 448 >gi|332970851|gb|EGK09830.1| 2-methylthioadenine synthetase [Psychrobacter sp. 1501(2011)] Length = 511 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 135/475 (28%), Positives = 222/475 (46%), Gaps = 45/475 (9%) Query: 17 IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 + + P+ FV S GC + DS R+ GY + + ADL+V+NTC E A Sbjct: 52 VTGSSVAPKVGFV-SLGCPKALVDSERIITELTRDGYRVASDYEGADLVVVNTCGFIESA 110 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 ++ +G I + G V+V GC+ + + E+I P V V G Y + Sbjct: 111 VQESLDAIGE-------AISQNGK--VIVTGCLGK-DAEKIRDMHPAVLAVTGAHAYDEV 160 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 + + + + + + K + + + G A+L I EGC+ CTFC++P Sbjct: 161 ITAVSKHAPMPQAIKDKKAYDPKIDLIDL--AGVKLTPSHYAYLKISEGCNHRCTFCIIP 218 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKC 245 RG +SR + +V++EA L GV E+ ++ Q+ +A W G L K Sbjct: 219 SLRGDLVSRPIDEVMNEAMALKKAGVKELLIISQDTSAYGLDLKYKTTFWNGMPL---KS 275 Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 F DL +L+++ VRL Y +P D L+ GD L+PYL +P+Q S +LK Sbjct: 276 KFFDLCEALAKVGIWVRLHYVYPYPHVDKVVELMAKPGDRGGLLPYLDIPLQHASPSVLK 335 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 +M R + I + R + PDI I S F+VGFPGET++DF +D + + + Sbjct: 336 AMKRPAHSENTLARIQKWREINPDIVIRSTFVVGFPGETEEDFEYLLDWLKQAKLDRVGC 395 Query: 365 FKYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 F YS G +++ V E VK ER + +Q+++ EQ++ VG+ + VL+++ Sbjct: 396 FTYSEIEGAVANDLPNPVPEEVKQERYERFMAVQQQISEQKIQDK---VGKTMTVLVDEI 452 Query: 422 GKEKGKLVGRS----P------WLQSVVLNSK-NHNIGDIIKVRITDVKISTLYG 465 E + RS P ++ +V N + +GD+I V I + L+ Sbjct: 453 DNEDYIAICRSYADAPEIDGHVYVDDIVQNGQVALKVGDMITVTIDEASEYDLFA 507 >gi|325916906|ref|ZP_08179151.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas vesicatoria ATCC 35937] gi|325536852|gb|EGD08603.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Xanthomonas vesicatoria ATCC 35937] Length = 457 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 138/460 (30%), Positives = 215/460 (46%), Gaps = 44/460 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V S D AD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N V+V GC+ + E+I P V V GPQ Y + E + A Sbjct: 65 IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D F L + D G A+L I EGC+ C+FC++P RG Sbjct: 115 LPPRH---------DPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLA 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254 SR + +V+ EA +L+ GV E+ ++ Q+ +A+ G L + + D +Y L Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRMYQTRMKALCEGL 223 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 SE+ RL Y +P + A G L +PYL +P Q S RILK M R + Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVEK 280 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + + R +++ P+I + S FIVGFPGETD +F + ++ +D+ + +F YSP G Sbjct: 281 TLERVQRWKAMCPEITVRSTFIVGFPGETDAEFESLLEFLDQAQLDRVGAFAYSPVDGAS 340 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS-- 432 + + + V E VK +RL + E + +A +G + + L++ E V RS Sbjct: 341 ANALPDPVPEEVKQQRLARFMARQAEISAARLEAKIGSVQQCLVDL--IEDDIAVARSRA 398 Query: 433 --PWLQSVVLNSKNH----NIGDIIKVRITDVKISTLYGE 466 P + +V +GD+I V ITD L+G+ Sbjct: 399 DAPEIDGLVHIQNGGELGLKVGDLIDVEITDSDEHDLFGD 438 >gi|158422878|ref|YP_001524170.1| ribosomal protein S12 methylthiotransferase [Azorhizobium caulinodans ORS 571] gi|238065289|sp|A8I0G1|RIMO_AZOC5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|158329767|dbj|BAF87252.1| putative 2-methylthioadenine synthetase [Azorhizobium caulinodans ORS 571] Length = 450 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 142/460 (30%), Positives = 220/460 (47%), Gaps = 40/460 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE + D ADL+++NTC + A + S Sbjct: 15 APRISFV-SLGCPKALVDSERIVTRLRAEGYELTRNHDGADLVIVNTCGFLDSAKAESLS 73 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + E G VVV GC+ AE E+I P V + GPQ Y + + + + Sbjct: 74 AIGEA-------LAENGK--VVVTGCMG-AEPEQIRAVHPSVLAITGPQQYESVLDAVHQ 123 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A K D F L + + G A+L I EGC+ CTFC++P RG Sbjct: 124 AVPPK---------HDPFLDL-VPEQGVKLTPRHYAYLKISEGCNNRCTFCIIPKLRGDL 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-------RGKGLDGEKCT-FSDLLYSL 254 +SR L++V+ EA KL+ GV E+ ++ Q+ +A+ + D + T F DL +L Sbjct: 174 VSRPLNEVMREAEKLVAAGVKELLVISQDTSAYGVDLKYAESRWKDRDWATRFFDLADAL 233 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 ++ VRL Y +P + A G + +PYL +P Q S +L+ M R + Sbjct: 234 GDLGAWVRLHYVYPYPHVDRVMELMASGKV---LPYLDIPFQHASPTVLRRMKRPAAQEK 290 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + R PDI + S FIVGFPGET+++F+ +D +D+ + FK+ P G P Sbjct: 291 TLARVLAWRDAVPDITLRSTFIVGFPGETEEEFQELLDFLDEAQLDRVGCFKFEPVAGAP 350 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEK--HGKEKGKLVG 430 + + V + VKAER L++Q +S VG +V+I+ G G+ G Sbjct: 351 ANALENPVPDEVKAERYDRFM--LKQQAISARRLKRKVGTRQQVIIDSVTPGGAIGRTKG 408 Query: 431 RSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 +P + SV + S+ +G+I V+I L G V Sbjct: 409 DAPEIDGSVKIASRRPLRVGEIATVKIEAADAYDLIGSAV 448 >gi|113971781|ref|YP_735574.1| ribosomal protein S12 methylthiotransferase [Shewanella sp. MR-4] gi|114046009|ref|YP_736559.1| ribosomal protein S12 methylthiotransferase [Shewanella sp. MR-7] gi|123130058|sp|Q0HEK0|RIMO_SHESM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|123326922|sp|Q0HZF3|RIMO_SHESR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|113886465|gb|ABI40517.1| MiaB-like tRNA modifying enzyme YliG [Shewanella sp. MR-4] gi|113887451|gb|ABI41502.1| MiaB-like tRNA modifying enzyme YliG [Shewanella sp. MR-7] Length = 476 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 141/467 (30%), Positives = 223/467 (47%), Gaps = 42/467 (8%) Query: 18 VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 D R S GC N+ DS R+ GYE NS D+ADL+++NTC + A Sbjct: 26 ADSTATGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAV 85 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 E+ L +R ++E G V+V GC+ E +I P V + GP +Y + Sbjct: 86 EES---LDAVREA----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV- 134 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 K V ++ + F L I G A+L I EGCD CTFC++P Sbjct: 135 ----LKHVHKYVPKPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPA 186 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFS 248 RG SR V+DEA++L+++GV EI ++ Q+ +A+ GK G K + Sbjct: 187 LRGDLDSRPAGSVLDEAKRLVESGVQEILVVSQDTSAY-GKDKGGRTDFWNGMPVKQDIT 245 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 L L ++ VRL Y +P + A G +++PYL +P+Q S RILK M R Sbjct: 246 SLARQLGKMGAWVRLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKMMKR 302 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + I R R + PD+ I S FIVGFPGET++DF +D + + + FKYS Sbjct: 303 PGRVDRQLEAIQRWREICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARLDRVGCFKYS 362 Query: 369 PRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 G + + E + E+VK + R + +Q ++ ++++ VG+ +++LI+ +E Sbjct: 363 EVEGAVANTIAELISEDVKEDRYHRFMEVQAEISAERLA---RFVGRTMDILIDDVDEEG 419 Query: 426 --GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 G+ +P + +V + + G +++ IT L+ ELV Sbjct: 420 AIGRSFADAPEIDGMVFINGETELEPGMLVRAVITHSDEHDLWAELV 466 >gi|117922061|ref|YP_871253.1| ribosomal protein S12 methylthiotransferase [Shewanella sp. ANA-3] gi|238066601|sp|A0L1C8|RIMO_SHESA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|117614393|gb|ABK49847.1| MiaB-like tRNA modifying enzyme YliG [Shewanella sp. ANA-3] Length = 480 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 139/454 (30%), Positives = 221/454 (48%), Gaps = 42/454 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ GYE NS D+ADL+++NTC + A E+ L +R Sbjct: 43 SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEES---LDAVREA 99 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E +I P V + GP +Y + K V Sbjct: 100 ----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV-----LKHVHKYVP 147 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 ++ + F L I G A+L I EGCD CTFC++P RG SR V Sbjct: 148 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPALRGDLDSRPAGSV 203 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSEIKGLV 261 +DEA++L+++GV EI ++ Q+ +A+ GK G K + L L ++ V Sbjct: 204 LDEAKRLVESGVQEILVVSQDTSAY-GKDKGGRTDFWNGMPVKQDITSLARQLGKMGAWV 262 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RL Y +P + A G +++PYL +P+Q S RILK M R + I R Sbjct: 263 RLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQR 319 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R + PD+ I S FIVGFPGET++DF +D + + + FKYS G + + E Sbjct: 320 WREICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARLDRVGCFKYSEVEGAVANTIAEL 379 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ 436 + E+VK + R + +Q ++ ++++ VG+ +++LI+ +E G+ +P + Sbjct: 380 ISEDVKEDRYHRFMEVQAEISAERLA---RFVGRTMDILIDDVDEEGAIGRSFADAPEID 436 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +V + + G +++ IT L+ ELV Sbjct: 437 GMVFINGETELEPGMLVRAVITHSDEHDLWAELV 470 >gi|53802700|ref|YP_112621.1| MiaB-like tRNA modifying enzyme YliG [Methylococcus capsulatus str. Bath] gi|81683237|sp|Q60CM4|RIMO_METCA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|53756461|gb|AAU90752.1| MiaB-like tRNA modifying enzyme YliG [Methylococcus capsulatus str. Bath] Length = 437 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 134/457 (29%), Positives = 216/457 (47%), Gaps = 49/457 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY V + DADL+V+NTC + A E+ +G Sbjct: 10 SLGCPKALVDSERIITQLRAEGYAIVPTYQDADLVVVNTCGFIDAAVEESLEAIGEA--- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + E G V+V GC+ + EEI R P V V G Y + V Sbjct: 67 ----VAENGK--VIVTGCLGE-RPEEIQARHPAVLKVTGAHAYEEV---------MNAVH 110 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + + D F L G R A+L I EGC+ C+FC++P RG +SR + +V Sbjct: 111 EHLPPLHDPFMDLVPPQGVRLTPRHY-AYLKISEGCNHRCSFCIIPALRGDLVSRPIGEV 169 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA +L+ GV EI ++ Q+ +A W G+ L + F +L +L ++ Sbjct: 170 MTEAERLVAAGVKEILVVSQDTSAYGADLGYRTGFWGGRPL---RTRFQELARALGDLGV 226 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +RL Y +P + A G L +PYL +P Q S R+LK+M R I Sbjct: 227 WIRLHYVYPYPHVDEVIPLMAEGRL---LPYLDIPFQHASARVLKAMKRPAATENILAAI 283 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R R V P++ + S FIVGFPGET+D+FR +D +++ + F+YSP G + + Sbjct: 284 RRWREVCPELTLRSTFIVGFPGETEDEFRELLDFLEEARLDRVGCFEYSPVKGAAANALP 343 Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR---SP 433 + V VKAE RL+ +Q+++ ++ +G+ VL+++ E+G + R +P Sbjct: 344 DPVPAEVKAERHARLMEVQERISAARLRTR---IGRTETVLVDE-VVEEGAVARRRADAP 399 Query: 434 WLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + V ++ H +G+ ++ D L+ L Sbjct: 400 EIDGQVFIDGATHLEVGEFVEATFEDADAHDLWARLA 436 >gi|312129877|ref|YP_003997217.1| miab-like tRNA modifying enzyme [Leadbetterella byssophila DSM 17132] gi|311906423|gb|ADQ16864.1| MiaB-like tRNA modifying enzyme [Leadbetterella byssophila DSM 17132] Length = 442 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 131/434 (30%), Positives = 214/434 (49%), Gaps = 29/434 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F +G+++V ++ D+ ++NTC + E A +K + + Sbjct: 8 TLGCKLNFSETSTISRTFEEKGFKKVGFNENPDIFIINTCSVTENADKKCRKIVKEAQ-- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +I G V + GC AQ + EI V+ V+G +RL ELL F K Sbjct: 66 ---KINPNG--FVAIIGCYAQLKPREIAEIEG-VDAVLGAAEKFRLHELL--PTFEK--- 114 Query: 151 DTDYSVEDKFERLSI-----VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 T VE+K SI Y+ FL +Q+GCD C++C +P RG S Sbjct: 115 -TSRPVEEKVYARSIDEPLEYHTSYSLHDRTRTFLKVQDGCDYPCSYCTIPMARGASRSD 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLR 264 ++ VV AR++ NGV EI L G N+ + +DG++ + F DL+ +L E++G+ R R Sbjct: 174 TIENVVKAAREIAANGVKEIVLTGVNIGDF--GIIDGKRTSSFLDLIQALDEVEGIERFR 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P +++ +I+ +P+ H+P+QSGS++IL M RR+ Y + + IR Sbjct: 232 ISSIEPNLLTNEIIQFVAHSKRFVPHFHIPLQSGSNKILGLMRRRYRRELYAERVAAIRE 291 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-- 382 V PD I D IVG PGE +DF T + ++++ F YS R T + V Sbjct: 292 VMPDCCIGVDVIVGHPGELHEDFIDTYNFLNELDINYLHVFTYSERANTKALEIKPVVGM 351 Query: 383 -DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 D N +++ L L K R +F + +G+ VL E+ G+ + G + VV Sbjct: 352 RDRNERSKMLHILSDKKRR---AFYEDNLGKEFPVLFEE-GEGGDIMHGFTSNYVKVVAK 407 Query: 442 SKNHNIGDIIKVRI 455 I DI+KVR+ Sbjct: 408 YDPLRINDIVKVRL 421 >gi|255016549|ref|ZP_05288675.1| putative Fe-S oxidoreductase [Bacteroides sp. 2_1_7] Length = 444 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 124/403 (30%), Positives = 199/403 (49%), Gaps = 22/403 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + QG +V + AD+ V+NTC + E A +K + RI Sbjct: 16 TLGCKLNFAETSTIGKLLAEQGVRKVRPGEKADICVVNTCSVTELADKKCRQAIRRIG-- 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---ELLERARFGK 147 K+ +VV GC AQ + EE+ V++V+G + + E LE+ G Sbjct: 74 -----KQHPGAFIVVTGCYAQLKPEEVSHIEG-VDLVLGAEQKLEILQYLENLEKKENGG 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 V+ + F D +R R FL +Q+GCD +C++C +P+ RG + ++ Sbjct: 128 AVIASQSKDIRSFSPSCSAD---DRTR---HFLKVQDGCDYYCSYCTIPFARGRSRNGTI 181 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++A+++ G EI L G N+ + GK D TF DL+ +L E+ G+VR R ++ Sbjct: 182 ASMVEQAQEVARKGGKEIVLTGVNIGDF-GKSTDE---TFIDLIRALDEVDGIVRYRISS 237 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D I P+ H+P+QSGSD +L+ M RR+ +R I++I+ V P Sbjct: 238 IEPNLITDEAIDFVAHSKRFAPHFHIPLQSGSDAVLQLMRRRYDTALFRHKIEKIKEVMP 297 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 I D IVG GETD+ F + + +Q F YS R GT + VD K Sbjct: 298 HAFIGVDVIVGTRGETDEYFEEARQFIGSLDISQLHVFSYSERPGTQALKIDHVVDPKTK 357 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 R L + +F +A +GQ VL E H K+ GK+ G Sbjct: 358 HARSQQLLDISDRKLHAFYEAHIGQEANVLFE-HTKKDGKMHG 399 >gi|15678846|ref|NP_275963.1| hypothetical protein MTH826 [Methanothermobacter thermautotrophicus str. Delta H] gi|6226399|sp|O26914|Y826_METTH RecName: Full=Putative methylthiotransferase MTH_826 gi|2621916|gb|AAB85324.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 424 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 134/450 (29%), Positives = 232/450 (51%), Gaps = 39/450 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R +++++GC N DS M + +G + +DDAD+I++NTC+++ KV + Sbjct: 5 RVYIETFGCTFNQADSEIMAGVLREEGAV-LTGIDDADVIIINTCYVKHPTEHKV---IN 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI+ ++ + ++G +VVAGC+ + + ++ S + + GP R P+ + A Sbjct: 61 RIKKIQETYPEKG----LVVAGCMVEIDPSKLEAISGDASWL-GPHQLRRAPQAVRAASN 115 Query: 146 G--KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G +R+ V+ K R+ R + + I EGC+ C++C + RG Sbjct: 116 GLVERITGFTSDVKVKVPRV--------RSNPLIHIIPICEGCNGSCSYCCTRFARGRIQ 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 S ++ EAR+ + +G EI L Q+ A+ G+D GEK SD++ +S I G R Sbjct: 168 SYPSDLIISEAREAVASGCREIQLTAQDTAAY---GVDTGEK--LSDIIKGISGIPGNFR 222 Query: 263 LRYTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 +R HP RD+ D L++A V +LHLPVQSGSD +L M R HT E+R I Sbjct: 223 IRVGMMHPASVLRDL-DGLVEAFKSEKVY-SFLHLPVQSGSDSVLADMERGHTVDEFRMI 280 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTPGS 376 ++R RS PDI+I++D IVG+P E +DF T L++++ + +++ PR + Sbjct: 281 VERFRSEIPDISIATDIIVGYPTEEREDFMDTCSLLEEVKPSFIHLSKYRHRPRARSSSL 340 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 + ++ + ++ L L+ ++ E++ N VG E+L+ + G+ KG +GR+ Sbjct: 341 DEIDFRELRRRSRALEELKMRITEEE---NRRLVGSFQEILVVERGR-KGGFIGRTGSYI 396 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 VV ++ G +VRI D + L + Sbjct: 397 PVV--TETGEPGSFRRVRIRDATGTYLLAD 424 >gi|171914402|ref|ZP_02929872.1| MiaB-like tRNA modifying enzyme YliG [Verrucomicrobium spinosum DSM 4136] Length = 478 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 128/448 (28%), Positives = 220/448 (49%), Gaps = 25/448 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M G ++AD++++NTC + A ++ + + Sbjct: 8 SLGCAKNLIDSEIMIGHLQQAGMAMTPQAEEADVLIINTCSFIDMAKKES---IASVHEA 64 Query: 91 KNSRIKEGGDLL----VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + R EGG + ++VAGC+AQ +E+ P V+ +G ++ ++E Sbjct: 65 VDGR-AEGGKVRAKQKIIVAGCMAQRFAQELPNLMPEVDAFIGLDQLTKVAPIIEGLMGK 123 Query: 147 KRVVD--TDYSVEDKFERLSIVDGGYNR-KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 KR D + V +K + + D R TA++ I EGC+ C+FC++P RG Sbjct: 124 KREEDEAPENHVTEKPQYIPDYDTPRFRLTPKHTAYIKIAEGCNHPCSFCIIPKIRGKHR 183 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQN-----VNAWRGK------GLDGEKC-TFSDLL 251 SR+ VV EA+ LI +GV EI L+ Q+ ++ W G+ G+D + + + L+ Sbjct: 184 SRTQESVVFEAKALIKSGVKEINLISQDTTYFGMDKWEGQRPNPRSGVDSSRGESLATLI 243 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L+ ++G +R +HP SD LI+A + + ++ Y+ +P+Q SD +L M R Sbjct: 244 RELNALEGDFWIRLLYTHPAHWSDELIQAVAECEKVVKYVDIPLQHISDNMLTLMKRETN 303 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 R++I R+R+ P IAI + FIVGFPGET+ DF + +++ + +A F YS Sbjct: 304 GAYIRELIQRMRAGIPGIAIRTTFIVGFPGETEADFEELVQFIEETKFERAGVFNYSREE 363 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 GT M + + + R + L+ + FN + +G+ VL+E G +G+ Sbjct: 364 GTRADKMEGHLHHSTRKRRWNEAMRVLQHRAEEFNASQLGKTYRVLVENPG--EGRSYMD 421 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVK 459 S + VV +G+ +V I+D + Sbjct: 422 SIDIDGVVFVDPALPVGEFAEVTISDWR 449 >gi|85708149|ref|ZP_01039215.1| hypothetical protein NAP1_02900 [Erythrobacter sp. NAP1] gi|85689683|gb|EAQ29686.1| hypothetical protein NAP1_02900 [Erythrobacter sp. NAP1] Length = 391 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 114/394 (28%), Positives = 189/394 (47%), Gaps = 43/394 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S GC++N+ +S RM+ M G D++V+N+C + +A + + + R Sbjct: 6 VISLGCRLNIAESERMKGMLADAG----------DVVVVNSCAVTSEAVRQTRQAIRKAR 55 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 + D ++V GC A E +++ +PE+ + Sbjct: 56 AARP-------DARLIVTGCAADIERDQL----------------AAMPEVDGLIANASK 92 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ++V R R AF+ +Q GCD CTFCV+P RG S +++ Sbjct: 93 LDPRSWNVPLPEAPPP-----PTRTR---AFIAVQNGCDHACTFCVIPQGRGKSRSMTIA 144 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V+ E +D G E L G +V +W G L + + L+E L RLR ++ Sbjct: 145 EVLREVEHHLDLGAKEAVLTGVDVTSW-GHDLPDTPPLGALVGAVLNEFPNLPRLRMSSL 203 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++ + L + LMP+LHL +Q G D ILK M RRH+ + ++ RI+ RP+ Sbjct: 204 DGIEIDEALFELFASEKRLMPHLHLSLQHGHDLILKRMKRRHSRADAVDLVARIKQRRPE 263 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 IAI +D I GFP E+D+ A + ++D++ F YSPR GTP + M QVD + Sbjct: 264 IAIGADLIAGFPTESDEHHAANLSIIDELDIVHGHIFPYSPRPGTPAARM-PQVDRRIVK 322 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 R L++++ E++ ++ VG+ +EVL E+ G Sbjct: 323 ARAAELRERVAERRAAWLTTLVGENLEVLAERDG 356 >gi|306843383|ref|ZP_07475984.1| MiaB-like tRNA modifying enzyme [Brucella sp. BO1] gi|306276074|gb|EFM57774.1| MiaB-like tRNA modifying enzyme [Brucella sp. BO1] Length = 427 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 128/432 (29%), Positives = 213/432 (49%), Gaps = 34/432 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S M+ + G + ++ D I+ NTC + +A + + + R Sbjct: 7 TFGCRLNTYESEVMKREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144 +E D ++V GC AQ E + V++V+G + +Y LP+ + Sbjct: 61 -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDFGVN-Q 113 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 F K V+ V + + VD R R AF+ +Q GCD CTFC++PY RG S Sbjct: 114 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 168 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + VVD+ ++L+ NG E+ L G ++ ++ G L G + L+++ L RLR Sbjct: 169 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPGNLRLGKLVKTVLAQVPDLQRLR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ + + L++A LMP+LHL +Q+G D ILK M RRH + + + +R+ Sbjct: 228 LSSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCETVRA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +RPDI +D I GFP ET++ F+ ++ +V++ G F YSPR GTP + M QV Sbjct: 288 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 346 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + ER L+ + +A G +L+EK G V R+ ++ Sbjct: 347 EIVKERAARLRTEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQG- 399 Query: 445 HNIGDIIKVRIT 456 N G+II+ +T Sbjct: 400 -NAGEIIERIVT 410 >gi|253996254|ref|YP_003048318.1| 30S ribosomal protein S12 methylthiotransferase [Methylotenera mobilis JLW8] gi|253982933|gb|ACT47791.1| MiaB-like tRNA modifying enzyme YliG [Methylotenera mobilis JLW8] Length = 451 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 141/468 (30%), Positives = 223/468 (47%), Gaps = 57/468 (12%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 M + P+ FV S GC D+ R+ ++GYE S +ADL+V+NTC Sbjct: 1 MTMSTTSKNSTPKVGFV-SLGCPKAGSDAERILTQLRAEGYEISGSYGEADLVVVNTCGF 59 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 + A E+ +G N KN + V+V GC+ +G + P V V GP Sbjct: 60 IDSAVEESLDAIGEAIN-KNGK--------VIVTGCLGAKKGV-VEAAHPSVLAVTGP-- 107 Query: 133 YYRLPELLE--RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 + L E++ A K + F L + G A+L I EGC+ C Sbjct: 108 -HALEEVMTAVHANLPKP--------HEPFIDL-VPPQGVRLTPKHYAYLKISEGCNHRC 157 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKG 239 +FC++P RG +SR + +V++EA L++ GV EI ++ Q+ +A W G+ Sbjct: 158 SFCIIPSMRGDLVSRPIGEVLNEAENLVNAGVSEILVISQDTSAYGVDVKYRPGFWNGRP 217 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 + K ++L +LSE+ RL Y +P D +I D +++PYL +P Q S Sbjct: 218 V---KTRMTELTQALSELGVWTRLHYVYPYPH--VDEVIPLMAD-GLILPYLDVPFQHAS 271 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 RILK+M R ++ I R + PDI I S FI GFPGET+DDF+ +D +++ Sbjct: 272 PRILKAMKRPASSENNLARIKAWRDICPDITIRSTFIAGFPGETEDDFKQLLDFMEEAQL 331 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEV 416 + F YS G + + +QV E VK ERL + +Q+++ +V A +G I V Sbjct: 332 DRVGCFAYSAVDGAAANALPDQVPEEVKQERLSRFMEVQERISAAKVH---AKIGSIQTV 388 Query: 417 L-------IEKHGKEKGKLVGRSPWLQSVVL--NSKNHNIGDIIKVRI 455 L +E + + G+ +P + VV +++ N GD ++V I Sbjct: 389 LVDEIVTDVEGNVEAIGRTKADAPEIDGVVYLEDAEGLNPGDFVEVEI 436 >gi|149922745|ref|ZP_01911170.1| tRNA 2-methylthioadenosine synthase -like protein [Plesiocystis pacifica SIR-1] gi|149816365|gb|EDM75866.1| tRNA 2-methylthioadenosine synthase -like protein [Plesiocystis pacifica SIR-1] Length = 453 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 128/443 (28%), Positives = 205/443 (46%), Gaps = 32/443 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R V ++GC++N +S + + + G+E V + ADL +LN+C I +A + + Sbjct: 2 RVAVDTHGCRLNQAESDAIAEQLRAAGHELVPRAELADLYLLNSCAITHEADADARAAV- 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR--LPELLERA 143 R N ++ V+V GC A AE E L P V V+G R LP L+ +A Sbjct: 61 RRARRHNPAVE------VIVTGCHANAE-PEALAAMPEVTAVLGNLEKGRAELPRLIAQA 113 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-------------VTAFLTIQEGCDKFC 190 R D RLS R+R L +Q+GCD C Sbjct: 114 LDSARGERADGGAFVSVSRLSR---SVRRERPDAWSLPPATSVPRTRPLLKVQDGCDYQC 170 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 +FC+VP RG S + + + R L+D G E+ L G ++ W G+ L + + L Sbjct: 171 SFCIVPSVRGRSRSLDVETLATQLRGLVDAGHPEVVLTGAHLGLW-GRDLGQGERGLAAL 229 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIK-----AHGDLDVLMPYLHLPVQSGSDRILKS 305 + L RLR + P ++ D L++ G L+P+LHLP+Q G D +L++ Sbjct: 230 VAGLRAAVPEARLRLGSVDPHEVDDALVRWVARGVDGRGAGLVPHLHLPIQHGDDGVLRA 289 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R H + Q+ ++R+ P +AI +D IVGFPGE D F T L + + A F Sbjct: 290 MRRAHRVADLEQLAPKLRAADPHMAIGTDVIVGFPGEDDGAFERTHALFEALAIPFAHVF 349 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 +SPR GTP ++ ++V A R L++++ F D +G + ++ + + Sbjct: 350 SWSPRSGTPAVDLPDRVPAPTAAARSKALRERVATNWAGFVDGQLGALRSAVVLRRRNRQ 409 Query: 426 GKLVGRSPWLQSVVLNSKNHNIG 448 G+LV + VVL+ + +G Sbjct: 410 GQLVALTDNYLRVVLDGPDSALG 432 >gi|238650895|ref|YP_002916751.1| tRNA 2-methylthioadenosine synthase-like protein [Rickettsia peacockii str. Rustic] gi|238624993|gb|ACR47699.1| tRNA 2-methylthioadenosine synthase-like protein [Rickettsia peacockii str. Rustic] Length = 421 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 118/398 (29%), Positives = 198/398 (49%), Gaps = 37/398 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N+Y+S + G + V + NTC + KAAEK + R Sbjct: 16 TFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAV-TKAAEK------QARQA 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERARF 145 K DL ++V GC AQ ++ P V+ V+G + YY++ + Sbjct: 61 IRKAKKNNPDLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLPNYYQITD------- 112 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 K V+ SV++ L +R AF+ +Q GCD FCTFC++PY RG S Sbjct: 113 AKITVNDIMSVKETASHLVSCFDCKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSRSV 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLR 264 ++ + ++ + L+ NG E+ G +V A+ G L G TF+ ++ L+ + L RLR Sbjct: 168 AIGAIAEQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPALKRLR 225 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ ++ D L + + +MP+ H+ +Q+G D ILK M RRH + ++R+ Sbjct: 226 LSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKLRA 285 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +RP+++ +D I GFP ET + F T L+ + F YS R GTP + M QV + Sbjct: 286 IRPEVSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARM-PQVPK 344 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 N++ ER L+++ + Q F +GQ +E+L+E + Sbjct: 345 NIRKERAAILRQEGQNQLTEFFKKHIGQKVELLVENNN 382 >gi|218666627|ref|YP_002424637.1| MiaB-like tRNA modifying enzyme YliG, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|238065273|sp|B7J3M4|RIMO_ACIF2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|218518840|gb|ACK79426.1| MiaB-like tRNA modifying enzyme YliG, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 446 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 146/469 (31%), Positives = 220/469 (46%), Gaps = 56/469 (11%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P + S GC DS R+ ++GY V +AD++V+NTC + A E+ Sbjct: 8 PPKVGFVSLGCPKATVDSERILTQLRAEGYLLVGDYANADVVVVNTCGFIDAAVEESLEA 67 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLER 142 +G + E G VVV GC+ EG + +R + P V V GP + + + Sbjct: 68 IGEA-------LDENGK--VVVTGCLGAREGGDFVRGAHPKVLAVTGPNQAGAVLDAIHA 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A TD V + RL+ A+L I EGC++ C+FC++P RG Sbjct: 119 ALPPAHDPYTDL-VPPQGLRLTPPH---------YAYLKISEGCNQSCSFCIIPSMRGKL 168 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251 +SR+ ++ EA L+ G E+ ++ Q+ A+ G+D + K +DL Sbjct: 169 VSRAPDDILREAEALVAGGAKELLVISQDTGAY---GVDRKYRTAFHNGRPLKTRITDLC 225 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L E+ VRL Y +P + A G ++PYL +P+Q GS RILK+M RR Sbjct: 226 AALGELGVWVRLHYVYPYPHIDELLPLMAEGK---ILPYLDVPLQHGSPRILKAM-RRPA 281 Query: 312 AYEYRQIIDRI---RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 A E + +DRI R PD+ I S FIVGFPGETD DF +D + + F YS Sbjct: 282 AAE--KTLDRILGWRQAVPDLIIRSTFIVGFPGETDADFAELLDFLRAAELDRVGCFAYS 339 Query: 369 PRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 G P + + V E VK ER + +Q+ + Q++ VGQ VL++ + Sbjct: 340 AVEGAPANAIAGAVPEPVKEERRAAFMAVQEAISRQRLQRR---VGQRQRVLVDAMAR-G 395 Query: 426 GKLVGRS----PWLQSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468 G+++ RS P + VV K +GD ++V IT LYG +V Sbjct: 396 GRVIARSASDAPEIDGVVHLGKAAGLQVGDWVEVAITRADAHDLYGMVV 444 >gi|71066091|ref|YP_264818.1| ribosomal protein S12 methylthiotransferase [Psychrobacter arcticus 273-4] gi|123775584|sp|Q4FRH4|RIMO_PSYA2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|71039076|gb|AAZ19384.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 525 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 132/425 (31%), Positives = 214/425 (50%), Gaps = 41/425 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ GY+ + D ADL+V+NTC E A ++ Sbjct: 82 PKIGFV-SLGCPKALVDSERIITELSRDGYQVASDYDGADLVVVNTCGFIESAVQESLDA 140 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + KN + V+V GC+ + E ++I P V V G Y + + RA Sbjct: 141 IGEAIS-KNGK--------VIVTGCLGK-EADKIREMHPAVLAVTGAHAY----DEVIRA 186 Query: 144 RFGKRVVDTDYSVEDKFE-RLSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 V D S++ ++ ++ ++ + G A+L I EGC+ CTFC++P RG Sbjct: 187 -VALHVPKPDRSLDASYDPKIDLINEAGIKLTPSHYAYLKISEGCNHRCTFCIIPSLRGD 245 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +SR + V++EA L GV E+ ++ Q+ +A W G L K F DL Sbjct: 246 LVSRPIDSVMNEALALKKAGVKELLIISQDTSAYGLDLKYKTSFWNGMPL---KSKFYDL 302 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L+++ VRL Y +P D +++ G+ L+PYL +P Q S RILK+M R Sbjct: 303 CQALNDLGIWVRLHYVYPYPH--VDKVVELMGEKK-LLPYLDIPFQHASHRILKAMKRPA 359 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + I R + PDI I S F+VGFPGET++DF+ +D + + + +F YS Sbjct: 360 HSENTLARIHAWREICPDIVIRSTFVVGFPGETEEDFQCLLDWLVEARLDRVGAFTYSEV 419 Query: 371 LGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 G +++ V E+VK ERL+ LQ+ + Q++ +G+ + VL+++ +E+G Sbjct: 420 EGAVANDLPNHVPEDVKQERYERLMTLQQDISAQKLQEK---IGKTLMVLVDEIDREEGV 476 Query: 428 LVGRS 432 + RS Sbjct: 477 AICRS 481 >gi|114769928|ref|ZP_01447538.1| MiaB-like tRNA modifying enzyme [alpha proteobacterium HTCC2255] gi|114549633|gb|EAU52515.1| MiaB-like tRNA modifying enzyme [alpha proteobacterium HTCC2255] Length = 420 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 136/451 (30%), Positives = 223/451 (49%), Gaps = 53/451 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ + G + +++V+NTC + AE V IR L Sbjct: 8 TQGCRLNAYETEAMKELADAAGLK--------NIVVVNTCAV---TAEAVRKSKQEIRKL 56 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL---PELLE 141 + ++ + ++V GC AQ E + S V++V+G T+ + P+ + Sbjct: 57 R----RDNPNSQMIVTGCAAQIEPKTFSEMSE-VDLVIGNTEKMDSNTWNEISNKPDFVG 111 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + K +VD SV++ L +DG R R A++ +Q GCD CTFC++PY RG Sbjct: 112 KTE--KVMVDDIMSVKNTAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGN 164 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYS-LSEIKG 259 S VVD+ ++L+D G E+ L G ++ +W G D DL+ L + Sbjct: 165 SRSVPAGVVVDQIKRLVDTGYNEVVLTGVDITSW---GADLPMVPKLGDLVQRILKLVPD 221 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L RLR ++ + LI A LMP+LHL +Q+G D ILK M RRH + + Sbjct: 222 LPRLRISSIDSIEADPALIDAISSEMRLMPHLHLSLQAGDDMILKRMKRRHLRDDAIEFC 281 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++RSVRP+I +D I GFP ET++ F +++L+ + G F +SPR GTP + M Sbjct: 282 SKMRSVRPNIVYGADIIAGFPTETEEMFENSLNLIKECGLTWLHVFPFSPREGTPAARM- 340 Query: 380 EQVDENVKAERL----LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 Q+D ++ ER LC + +++ A +G VLIE + +GR+ Sbjct: 341 PQMDRSIIKERAARLRLCGELAVKDHLA----AQIGLEHNVLIE------NERMGRTEGF 390 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 V+ N K+ G I+ +I D + L + Sbjct: 391 TEVLFN-KDQIKGSIVNAKIVDKSLKQLIAQ 420 >gi|154251867|ref|YP_001412691.1| MiaB-like tRNA modifying enzyme [Parvibaculum lavamentivorans DS-1] gi|154155817|gb|ABS63034.1| MiaB-like tRNA modifying enzyme [Parvibaculum lavamentivorans DS-1] Length = 420 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 132/430 (30%), Positives = 204/430 (47%), Gaps = 35/430 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S M +G+ +D A IV NTC + +A + + + R Sbjct: 9 TFGCRLNAYESEVM------RGHAEAAGLDGA--IVFNTCAVTAEAERQARQAIRKAR-- 58 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP----QTYYRLPELLERARFG 146 +E ++V GC AQ + + V++V+G Q P L Sbjct: 59 -----RENPQARIIVTGCAAQVNPDAFAEMTE-VDLVIGNEEKLQAASWQPALALHTNER 112 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 RV D E +V G R R AF+ +Q GCD CTFC++PY RG S Sbjct: 113 VRVNDIMSVTETAGH---LVGGLEGRAR---AFVQVQNGCDHRCTFCIIPYGRGPSRSVP 166 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +VV++ R L+ NG E+ L G ++ ++ G L G + L + L RLR + Sbjct: 167 AGEVVNQVRTLVGNGYREVVLTGVDMTSY-GGDLPGRPSLGNLARRILKLVPELERLRLS 225 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + + D L++ + + LMP+LHL +QSG D ILK M RRH + + + +R R Sbjct: 226 SIDSIEADDELMRLIAEEERLMPHLHLSLQSGDDMILKRMKRRHLREDSIRFCEDVRKAR 285 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDI +DFI GFP ETD+ F TM LVD+ G F +SPR GTP + M QV + Sbjct: 286 PDIIFGADFIAGFPTETDEMFENTMRLVDECGLTWLHVFPFSPRPGTPAAKM-PQVSREM 344 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 R L+ K E+ + ++ +G VL+E +GR+ V + ++ Sbjct: 345 GKARAERLRMKGAERVRAHLESGLGATRPVLMET------PTLGRTHQFTPVRV-TEAAT 397 Query: 447 IGDIIKVRIT 456 G+I+ +R+ Sbjct: 398 AGEILPLRLA 407 >gi|238920449|ref|YP_002933964.1| ribosomal protein S12 methylthiotransferase [Edwardsiella ictaluri 93-146] gi|238870018|gb|ACR69729.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 441 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 131/456 (28%), Positives = 220/456 (48%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY V + +DADL+++NTC + A ++ +G Sbjct: 14 SLGCPKNLVDSERILTELRTEGYLVVPTYEDADLVIVNTCGFIDSAVQESLEAIGEA--- 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + E G V+V GC+ E + I P V + GP +Y ++ K V Sbjct: 71 ----LHENGK--VIVTGCLGAKENQ-IREVHPKVLEISGPHSYEQV-----LHHVHKYVA 118 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + + F L + + G A+L I EGC+ C FC++P RG SRS+ V Sbjct: 119 KPQH---NPFTSL-VPEQGVKLTPKHFAYLKISEGCNHRCAFCIIPSLRGDLESRSIGSV 174 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 +DEA++L D+GV E+ ++ Q+ A W G+ + K + L L+ + Sbjct: 175 LDEAKRLADSGVRELLVISQDTAAYGADIQHRTGFWNGQPV---KTSMLSLCEQLATLGV 231 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +RL Y +P + A G L +PYL +P+Q S RILK M R + I Sbjct: 232 WIRLHYVYPYPHVDDVIPLMAQGKL---LPYLDIPLQHASPRILKLMKRPGAVERTLERI 288 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R R + P + + S FIVGFPGET++DF+ +D + + + F+YSP G + + Sbjct: 289 KRWREICPQLTLRSTFIVGFPGETEEDFQMLLDFLREARLDRVGCFQYSPVEGAAANELP 348 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 +QV + +K +R + LQ+++ +++ VG + V+I++ E G+ + +P Sbjct: 349 DQVPDEIKQARFDRFMQLQQQISAERLQEK---VGLTLPVIIDEVDGEGAIGRSMADAPE 405 Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + VV + ++ GDI+ V I + ++G L Sbjct: 406 IDGVVYLNGERSVKPGDIVNVTIENADEYDMWGSLA 441 >gi|15835786|ref|NP_300310.1| hypothetical protein CPj0251 [Chlamydophila pneumoniae J138] gi|8978624|dbj|BAA98461.1| conserved hypothetical protein [Chlamydophila pneumoniae J138] Length = 500 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 114/416 (27%), Positives = 200/416 (48%), Gaps = 20/416 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + GYE N ++DAD ++LNTC + A ++ +L + ++ Sbjct: 54 SLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEAKDYLDHLIDV 113 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K K ++V GC+ +E+ ++ ++G + +E G+++ Sbjct: 114 KKENAK------IIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESGEKIS 167 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y + R Y A+L + EGC K C FC++P +G S+ L Q+ Sbjct: 168 AKSYIEMGEVPRQLSTPKHY-------AYLKVAEGCRKRCAFCIIPSIKGKLRSKPLDQI 220 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSH 269 + E R L++ V EI L+ Q++ + GK L ++ + LL+ L + G LR + Sbjct: 221 LKEFRILVNKSVKEIILIAQDLGDY-GKDLSTDRSSQLESLLHELLKEPGDYWLRMLYLY 279 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P ++SD +I L+PY+ +P+Q +DRILK M R + + ++++R+ P + Sbjct: 280 PDEVSDGIIDLMQSNPKLLPYVDIPLQHINDRILKQMRRTTSREQILGFLEKLRAKVPQV 339 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 I S IVGFPGET ++F+ D + + F YS TP + + +Q+ E VK Sbjct: 340 YIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEKVKES 399 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-----GRSPWLQSVVL 440 RL L + + N +G+ IE +I+ + E L+ G++P + ++ Sbjct: 400 RLKILSQIQKRNVDKHNQKLIGEKIEAVIDNYHPETNLLLTARFYGQAPEVDPCII 455 >gi|326800449|ref|YP_004318268.1| MiaB-like tRNA modifying enzyme [Sphingobacterium sp. 21] gi|326551213|gb|ADZ79598.1| MiaB-like tRNA modifying enzyme [Sphingobacterium sp. 21] Length = 439 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 117/400 (29%), Positives = 200/400 (50%), Gaps = 13/400 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + GC++N ++ + +F GY+ V + AD+ V+NTC + + A +K Sbjct: 3 KRVAFYTLGCKLNFSETSSIGRIFQDAGYQTVPFNERADVYVINTCSVTDNADKKC---- 58 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + +K + + GC AQ + EI P V++V+G + + E + Sbjct: 59 ---RKVVKEALKYSPQAYITIVGCYAQLKPREIAE-IPGVDMVLGAAEKFNIIEHINDLT 114 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K+ + + +E+ + G +R R FL +Q+GCD CTFC +P RG S Sbjct: 115 KQKKAIIHNAPIEETNVFVPAFSFG-DRTR---TFLKVQDGCDYSCTFCTIPLARGASRS 170 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 ++ +V +A+ + +GV EI L G N+ + G + F DL+ +L + G+ R R Sbjct: 171 GTIESLVKQAKDIAASGVKEIVLTGVNIGDF-GMRQGQREDRFLDLVKALDAVDGIDRFR 229 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P +S+ +I +P+ H+P+QSGS++IL M RR+ Y + + RI+S Sbjct: 230 ISSIEPNLLSNEIIDFVASSKRFVPHFHMPLQSGSNKILGLMRRRYKRELYAERVKRIKS 289 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + PD I D IVGFPGET +DF T + ++ + + F YS R T S M V Sbjct: 290 LMPDCCIGVDVIVGFPGETREDFLQTYEFLNDLDISYLHVFTYSERENTIASQMEGAVPG 349 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 + +++R L +++ +F + +G +EVL E KE Sbjct: 350 SARSDRSKMLHILSEKKRRAFYVSQLGNEMEVLFESDVKE 389 >gi|238065378|sp|Q9Z8T3|RIMO_CHLPN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO Length = 468 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 114/416 (27%), Positives = 200/416 (48%), Gaps = 20/416 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + GYE N ++DAD ++LNTC + A ++ +L + ++ Sbjct: 22 SLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEAKDYLDHLIDV 81 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K K ++V GC+ +E+ ++ ++G + +E G+++ Sbjct: 82 KKENAK------IIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESGEKIS 135 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y + R Y A+L + EGC K C FC++P +G S+ L Q+ Sbjct: 136 AKSYIEMGEVPRQLSTPKHY-------AYLKVAEGCRKRCAFCIIPSIKGKLRSKPLDQI 188 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSH 269 + E R L++ V EI L+ Q++ + GK L ++ + LL+ L + G LR + Sbjct: 189 LKEFRILVNKSVKEIILIAQDLGDY-GKDLSTDRSSQLESLLHELLKEPGDYWLRMLYLY 247 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P ++SD +I L+PY+ +P+Q +DRILK M R + + ++++R+ P + Sbjct: 248 PDEVSDGIIDLMQSNPKLLPYVDIPLQHINDRILKQMRRTTSREQILGFLEKLRAKVPQV 307 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 I S IVGFPGET ++F+ D + + F YS TP + + +Q+ E VK Sbjct: 308 YIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEKVKES 367 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-----GRSPWLQSVVL 440 RL L + + N +G+ IE +I+ + E L+ G++P + ++ Sbjct: 368 RLKILSQIQKRNVDKHNQKLIGEKIEAVIDNYHPETNLLLTARFYGQAPEVDPCII 423 >gi|118443956|ref|YP_878198.1| tRNA modifying protein [Clostridium novyi NT] gi|238065369|sp|A0Q0P6|RIMO_CLONN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|118134412|gb|ABK61456.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Clostridium novyi NT] Length = 444 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 129/445 (28%), Positives = 229/445 (51%), Gaps = 42/445 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYER---VNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 S GC N DS ++ + E+ VN + AD+I++NTC E + ++ + Sbjct: 10 SLGCDKNRIDS----ELLLGKLNEKNDIVNDPNKADIIIVNTCGFIESSKQESIDTI--- 62 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE +++ GC+ Q +E+L P +++++G Y + ++ F + Sbjct: 63 --LEMAKYKEENCKMIIATGCLTQRYSKELLELIPEIDIMLGVNDYANIQNYIDDF-FNE 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIE 202 + + K+ +SI +G KR +T A++ I EGC+ CT+C++P RG Sbjct: 120 H----NKICQCKYSDISINEG----KRILTTAKHMAYIRISEGCNNLCTYCIIPKIRGKY 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SRS+ +++EA++L + GV E+ L+GQ+ A G L E S LL LS I+ + Sbjct: 172 RSRSIESIINEAKELANMGVKELILVGQDT-AIYGSDLYKEN-RLSQLLRELSNIEDIEW 229 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R ++P +++D LI+ + D + YL +P+Q S+ +LK MNR+ + I D I Sbjct: 230 IRILYTYPEEITDELIEEIKNNDKVCKYLDIPIQHISNTVLKRMNRKSSK---ELITDNI 286 Query: 323 RSVRPDI---AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + +R +I + + IVGFPGET+D+F + V++I + FKYS T + M Sbjct: 287 KKMRKEIDGLCLRTSIIVGFPGETEDEFNELKEFVEEIKFDNLGVFKYSQEEDTAAARMK 346 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435 +QV E++K ERL + + N + ++ +VL+E G+ +GR+ P + Sbjct: 347 DQVSEDLKEERLATIMSIQQNVSSKINKNKLEKVYKVLVE--GQNDKYYIGRNYQMVPEI 404 Query: 436 QSVVL--NSKNHNIGDIIKVRITDV 458 + K N+G+ + V+ITD Sbjct: 405 DGAIFFKCDKILNVGEFVYVKITDT 429 >gi|16752786|ref|NP_445054.1| hypothetical protein CP0510 [Chlamydophila pneumoniae AR39] gi|7189427|gb|AAF38338.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39] Length = 503 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 114/409 (27%), Positives = 197/409 (48%), Gaps = 20/409 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + GYE N ++DAD ++LNTC + A ++ +L + ++ Sbjct: 57 SLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEAKDYLDHLIDV 116 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K K ++V GC+ +E+ ++ ++G + +E G+++ Sbjct: 117 KKENAK------IIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESGEKIS 170 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y + R Y A+L + EGC K C FC++P +G S+ L Q+ Sbjct: 171 AKSYIEMGEVPRQLSTPKHY-------AYLKVAEGCRKRCAFCIIPSIKGKLRSKPLDQI 223 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSH 269 + E R L++ V EI L+ Q++ + GK L ++ + LL+ L + G LR + Sbjct: 224 LKEFRILVNKSVKEIILIAQDLGDY-GKDLSTDRSSQLESLLHELLKEPGDYWLRMLYLY 282 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P ++SD +I L+PY+ +P+Q +DRILK M R + + ++++R+ P + Sbjct: 283 PDEVSDGIIDLMQSNPKLLPYVDIPLQHINDRILKQMRRTTSREQILGFLEKLRAKVPQV 342 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 I S IVGFPGET ++F+ D + + F YS TP + + +Q+ E VK Sbjct: 343 YIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEKVKES 402 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-----GRSP 433 RL L + + N +G+ IE +I+ + E L+ G++P Sbjct: 403 RLKILSQIQKRNVDKHNQKLIGEKIEAVIDNYHPETNLLLTARFYGQAP 451 >gi|256822063|ref|YP_003146026.1| MiaB-like tRNA modifying enzyme [Kangiella koreensis DSM 16069] gi|256795602|gb|ACV26258.1| MiaB-like tRNA modifying enzyme [Kangiella koreensis DSM 16069] Length = 447 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 119/395 (30%), Positives = 200/395 (50%), Gaps = 22/395 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + + GC++N + + F G + +D ADLIVLNTC + +AA K + R Sbjct: 5 LSALGCRLNEAELQNWANSFQRLGLSLTSEVDAADLIVLNTCAVTAEAARKSRQTVRRFH 64 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 K VV GC A E EE+ + + VVV L+E+A K+ Sbjct: 65 RANPQARK-------VVTGCYASLEPEEVAQIMGVDLVVVNEDK----DALVEQA---KQ 110 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++D E E NR+R AF+ IQ+GC CT+C+V RG E SR++ Sbjct: 111 LLDIPAMPEFATEPGESALFARNRER---AFIKIQDGCRYRCTYCIVTVARGEERSRTIQ 167 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +VDE +L GV EI L G +V + G +D + +L+ ++ + R+R+ + Sbjct: 168 DLVDEVNQLHAEGVQEIVLAGVHVGGY-GSDIDS---SLYELVETILRDTDMPRIRFASV 223 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P D+ + + + LMP++HLP+QSG+D +L+ M+RR + +++++ ++ Sbjct: 224 EPWDLGENFFELFAN-PRLMPHMHLPIQSGADTVLRRMSRRCKTSSFSELVNQAKTQVAG 282 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +++D IVGFPGETD++F TM ++++G+ F YS R GT + + ++ + +K Sbjct: 283 FNVTTDVIVGFPGETDEEFELTMQYIEEVGFGHIHIFTYSDREGTKAARLPGKITKEIKK 342 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 ER L + +V+ + VG I+ VL E + Sbjct: 343 ERSHRLHELAARLKVAELERQVGLIVPVLWESSNQ 377 >gi|198282274|ref|YP_002218595.1| 30S ribosomal protein S12 methylthiotransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|238065274|sp|B5EK28|RIMO_ACIF5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|198246795|gb|ACH82388.1| MiaB-like tRNA modifying enzyme YliG [Acidithiobacillus ferrooxidans ATCC 53993] Length = 442 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 144/464 (31%), Positives = 217/464 (46%), Gaps = 56/464 (12%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S GC DS R+ ++GY V +AD++V+NTC + A E+ +G Sbjct: 9 VVSLGCPKATVDSERILTQLRAEGYLLVGDYANADVVVVNTCGFIDAAVEESLEAIGEA- 67 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERARFGK 147 + E G VVV GC+ EG + +R + P V V GP + + + A Sbjct: 68 ------LDENGK--VVVTGCLGAREGGDFVRGAHPKVLAVTGPNQAGAVLDAIHAAL--- 116 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D + L + G A+L I EGC++ C+FC++P RG +SR+ Sbjct: 117 ------PPAHDPYTDL-VPPQGLRLTPPHYAYLKISEGCNQSCSFCIIPSMRGKLVSRAP 169 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSE 256 ++ EA L+ G E+ ++ Q+ A+ G+D + K +DL +L E Sbjct: 170 DDILREAEALVAGGAKELLVISQDTGAY---GVDRKYRTAFHNGRPLKTRITDLCAALGE 226 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + VRL Y +P + A G ++PYL +P+Q GS RILK+M RR A E Sbjct: 227 LGVWVRLHYVYPYPHIDELLPLMAEGK---ILPYLDVPLQHGSPRILKAM-RRPAAAE-- 280 Query: 317 QIIDRI---RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + +DRI R PD+ I S FIVGFPGETD DF +D + + F YS G Sbjct: 281 KTLDRILGWRQAVPDLIIRSTFIVGFPGETDADFAELLDFLRAAELDRVGCFAYSAVEGA 340 Query: 374 PGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 P + + V E VK ER + +Q+ + Q++ VGQ VL++ + G+++ Sbjct: 341 PANAIAGAVPEPVKEERRAAFMAVQEAISRQRLQRR---VGQRQRVLVDAMAR-GGRVIA 396 Query: 431 RS----PWLQSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468 RS P + VV K +GD ++V IT LYG +V Sbjct: 397 RSASDAPEIDGVVHLGKAAGLQVGDWVEVAITRADAHDLYGMVV 440 >gi|239947306|ref|ZP_04699059.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239921582|gb|EER21606.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 423 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 120/400 (30%), Positives = 200/400 (50%), Gaps = 37/400 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N+Y+S + G + V + NTC + KAAEK + R Sbjct: 14 VVTFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAVT-KAAEK------QAR 58 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143 K DL ++V GC AQ ++ P V+ V+G + YY++ + Sbjct: 59 QAICKAKKNNPDLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLPNYYQITD----- 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K V+ SV++ L G +R AF+ +Q GCD FCTFC++PY RG Sbjct: 113 --EKITVNDIMSVKETASHLVSSFDGKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSR 165 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262 S ++ + ++ + L+ NG E+ G +V A+ G L G TF+ ++ L+ + L R Sbjct: 166 SVAIGAIAEQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPELKR 223 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ D L + + +MP+ H+ +Q+G D ILK M RRH + ++ Sbjct: 224 LRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKL 283 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R++RP+++ +D I GFP ET + F T L+ + F YS R GTP + M QV Sbjct: 284 RAIRPEVSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARM-PQV 342 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 +N++ ER L+++ + Q F +GQ +E+L+E + Sbjct: 343 PKNIRKERAEILRQEGQNQLTEFFKKHIGQKVELLVENNN 382 >gi|15618175|ref|NP_224460.1| hypothetical protein CPn0251 [Chlamydophila pneumoniae CWL029] gi|33241593|ref|NP_876534.1| hypothetical protein CpB0258 [Chlamydophila pneumoniae TW-183] gi|4376526|gb|AAD18404.1| conserved hypothetical protein [Chlamydophila pneumoniae CWL029] gi|33236101|gb|AAP98191.1| hypothetical protein CpB0258 [Chlamydophila pneumoniae TW-183] Length = 500 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 114/416 (27%), Positives = 200/416 (48%), Gaps = 20/416 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + GYE N ++DAD ++LNTC + A ++ +L + ++ Sbjct: 54 SLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEAKDYLDHLIDV 113 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K K ++V GC+ +E+ ++ ++G + +E G+++ Sbjct: 114 KKENAK------IIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESGEKIS 167 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y + R Y A+L + EGC K C FC++P +G S+ L Q+ Sbjct: 168 AKSYIEMGEVPRQLSTPKHY-------AYLKVAEGCRKRCAFCIIPSIKGKLRSKPLDQI 220 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSH 269 + E R L++ V EI L+ Q++ + GK L ++ + LL+ L + G LR + Sbjct: 221 LKEFRILVNKSVKEIILIAQDLGDY-GKDLSTDRSSQLESLLHELLKEPGDYWLRMLYLY 279 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P ++SD +I L+PY+ +P+Q +DRILK M R + + ++++R+ P + Sbjct: 280 PDEVSDGIIDLMQSNPKLLPYVDIPLQHINDRILKQMRRTTSREQILGFLEKLRAKVPQV 339 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 I S IVGFPGET ++F+ D + + F YS TP + + +Q+ E VK Sbjct: 340 YIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEKVKES 399 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-----GRSPWLQSVVL 440 RL L + + N +G+ IE +I+ + E L+ G++P + ++ Sbjct: 400 RLKILSQIQKRNVDKHNQKLIGEKIEAVIDNYHPETNLLLTARFYGQAPEVDPCII 455 >gi|85860140|ref|YP_462342.1| tRNA 2-methylthioadenosine synthase -like protein [Syntrophus aciditrophicus SB] gi|85723231|gb|ABC78174.1| tRNA 2-methylthioadenosine synthase -like protein [Syntrophus aciditrophicus SB] Length = 451 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 123/447 (27%), Positives = 221/447 (49%), Gaps = 23/447 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + + GC++N Y+S + + +GY V AD ++NTC + + + R Sbjct: 21 IATLGCKVNQYESEGLGEALTRRGYTMVPFSSVADCYIINTCTVTARTNYQS-------R 73 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARF 145 + I+ + ++VV GC AQ EI P V ++ G ++P+L+ R R Sbjct: 74 QIIRKAIRNNPEAVIVVTGCYAQTAPAEIAG-IPGVTLIAGHAEKDQIPDLIARLLKERL 132 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 RV D + +F L+ K AFL IQ+GC+ +C++C++P RG S Sbjct: 133 EIRVGDIGQT--RQFSSLAAT----RFKDHTRAFLKIQDGCNAWCSYCIIPSARGRSRSL 186 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 + V+++ + G E+ L G ++ A+ G D + + DLL + E + RLR Sbjct: 187 AEGSVLEQLAHMGRTGYREVVLTGIHLGAY---GQDFSPQSSLVDLLRKVEEQHPVERLR 243 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P ++SD I +L P+LH+P+QSG D IL M R +T ++ +++++ Sbjct: 244 LSSIEPTEISDDFIALLRQSALLCPHLHIPLQSGDDSILTRMKRHYTTSFFKDLLEKLCR 303 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD+AI D I GFPGE + F T++L++ + A F YS R GTP + M +QV Sbjct: 304 AIPDLAIGIDVIAGFPGEGEAAFERTVELIESLPVAYLHVFPYSVRPGTPAAAMPDQVSP 363 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRS-PWLQSVVLNS 442 + K +R L+ ++ +F G+ + VL+ E+ + G G S +L ++ N+ Sbjct: 364 DEKKKRAEILRTLGTRKREAFARRFHGRSLRVLVEERRERSSGLRKGFSGNYLPILMTNA 423 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 + +++V+I ++ + + G ++ Sbjct: 424 DASQVNQLVQVQIENIDGTRISGRIMT 450 >gi|78777220|ref|YP_393535.1| MiaB-like tRNA modifying enzyme [Sulfurimonas denitrificans DSM 1251] gi|78497760|gb|ABB44300.1| MiaB-like tRNA modifying enzyme [Sulfurimonas denitrificans DSM 1251] Length = 415 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 125/443 (28%), Positives = 221/443 (49%), Gaps = 30/443 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ + K++GC+ N+YDS M M + Y+ + +AD++V+N+C + A V S Sbjct: 1 MKKKVYFKTFGCRTNLYDSQVM--MSSLKEYDITENESEADVVVINSCTVTNGADSHVRS 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 ++ S +++ G + + GC A +GE +L + + V G ++ E+L + Sbjct: 59 YI--------SHVEKNGGAKIFLTGCGAHTKGESLLSQGRVAGVF-GQSEKVKIDEMLNK 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 D ++ E S+VD + R AF+ IQEGC+ C++C++PY RG Sbjct: 110 DEPFYEPGDLNHIDE------SVVDDFIGKSR---AFIKIQEGCNFRCSYCIIPYVRGDA 160 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S +++++ R+L NG E L G NV ++ K + + L+ +S+I+G+ R Sbjct: 161 RSMDEEKILEQIRRLARNGFGEFILTGTNVGSYGQKN----DSSIASLMKKISQIRGVRR 216 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R + P ++D K D L +LH+ +Q S +ILK MNRR+ + R++ + + Sbjct: 217 IRVGSVEPIQINDEF-KEILDEPWLERHLHIALQHTSPQILKLMNRRNVYKQDRELFELL 275 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 S AI +DFI G PGE+ + M V ++ +F YS R TP + M +V Sbjct: 276 SS--KGFAIGTDFITGHPGESSSLWSEAMRNVKELPLTHLHAFTYSKRDSTPSATMKPEV 333 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 V ERL L+ ++E+ +F A G ++VLIE ++ +G +V+ S Sbjct: 334 SGAVAKERLHELESIVKEKNFAFRKAFRG-TLDVLIE--SQKDDFFIGYDQHFNKIVVRS 390 Query: 443 KNHNIGDIIKVRITDVKISTLYG 465 +G+ I + +VK + YG Sbjct: 391 DEDLLGNWINISDYEVKEESNYG 413 >gi|220924966|ref|YP_002500268.1| ribosomal protein S12 methylthiotransferase [Methylobacterium nodulans ORS 2060] gi|219949573|gb|ACL59965.1| MiaB-like tRNA modifying enzyme YliG [Methylobacterium nodulans ORS 2060] Length = 437 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 142/464 (30%), Positives = 210/464 (45%), Gaps = 54/464 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE D AD++++NTC + A + Sbjct: 4 APKISFV-SLGCPKALVDSERILTHLRAEGYELARKHDGADVVIVNTCGFLDSAKAESLQ 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +N R V+V GC+ A+ +EI + P + + GPQ Y + + Sbjct: 63 AIGEAMA-ENGR--------VIVTGCMG-AQPDEIRDKYPNLLAITGPQAYESVVAAVHE 112 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D F L G R A+L I EGC+ CTFC++P RG Sbjct: 113 AV---------PPAHDPFLDLVPPQGVKLTPRHY-AYLKISEGCNNRCTFCIIPSLRGDL 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGE-KCTFSDL 250 +SR V+ EA KL+ GV E+ ++ Q+ +A WR DGE + F DL Sbjct: 163 VSRPAGDVLREAEKLVKAGVKELLVISQDTSAYGVDLRYAPSPWR----DGEVRARFYDL 218 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L E VRL Y +P + A G ++PYL +P+Q S +LK M R Sbjct: 219 ARALGEFGVWVRLHYVYPYPHVDEVIPLMAEG---TVLPYLDMPLQHASPSVLKRMRR-- 273 Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 ++++RIRS R PD+AI S FIVGFPGET+ +F + + + + F Y Sbjct: 274 -PANQEKMLERIRSWRSTCPDLAIRSTFIVGFPGETEAEFEELLAWLAEAKLERVGCFPY 332 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 P G + + E V E VKAER + A VG+ + V+I++ G K Sbjct: 333 EPVKGAAANGVAELVPEEVKAERYRRFMEAQAVISARLQKAKVGKRLPVIIDEAGPTVAK 392 Query: 428 LVGRSPWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYG 465 GRS + + S + GDI+ V+I L+G Sbjct: 393 --GRSKYDAPEIDGSVHVAFRRPVRAGDIVTVKIERADTYDLHG 434 >gi|67459038|ref|YP_246662.1| MiaB-like tRNA modifying enzyme [Rickettsia felis URRWXCal2] gi|67004571|gb|AAY61497.1| MiaB-like tRNA modifying enzyme [Rickettsia felis URRWXCal2] Length = 421 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 130/446 (29%), Positives = 218/446 (48%), Gaps = 44/446 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N+Y+S + G + V + NTC + KAAEK + R Sbjct: 14 VVTFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAV-TKAAEK------QAR 58 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143 K DL ++V GC AQ ++ P V+ V+G + +YY++ + Sbjct: 59 QAIRKAKKNNPDLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLPSYYQITD----- 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K V+ SV++ L G +R AF+ +Q GCD FCTFC++PY RG Sbjct: 113 --EKIAVNDIMSVKETAGHLVSSFDGKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSR 165 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262 S + +V + + L+ NG E+ G +V A+ G L G TF+ ++ L+ + L R Sbjct: 166 SVPIGAIVSQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPELKR 223 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ D L + + +MP+ H+ +Q+G D ILK M RRH + ++ Sbjct: 224 LRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKL 283 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R++RP+++ +D I GFP ET + F T L+ + F YS R GTP + M QV Sbjct: 284 RAIRPEVSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARM-PQV 342 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 + ++ ER L+++ + Q F +GQ +E+L+E + + + V L+ Sbjct: 343 PKAIRKERAEILRQEGQNQLSEFFKKHIGQKVELLVENNN------IAHTENFIPVKLD- 395 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 K IG I K ++ ++ + + ELV Sbjct: 396 KPLEIGQIFKAKLVGIEGNNMKCELV 421 >gi|306842918|ref|ZP_07475554.1| MiaB-like tRNA modifying enzyme [Brucella sp. BO2] gi|306286941|gb|EFM58461.1| MiaB-like tRNA modifying enzyme [Brucella sp. BO2] Length = 427 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 128/432 (29%), Positives = 212/432 (49%), Gaps = 34/432 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S M+ + G + ++ D I+ NTC + +A + + + R Sbjct: 7 TFGCRLNTYESEVMKREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144 +E D ++V GC AQ E + V++V+G + +Y LP+ + Sbjct: 61 -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDFGVN-Q 113 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 F K V+ V + + VD R R AF+ +Q GCD CTFC++PY RG S Sbjct: 114 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 168 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + VVD+ ++L+ NG E+ L G ++ ++ G L G + L+++ L RLR Sbjct: 169 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPGNLRLGKLVKTVLAQVPDLQRLR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ + + L++A LMP+LHL +Q+G D ILK M RRH + + +R+ Sbjct: 228 LSSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTVRA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +RPDI +D I GFP ET++ F+ ++ +V++ G F YSPR GTP + M QV Sbjct: 288 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 346 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + ER L+ + +A G +L+EK G V R+ ++ Sbjct: 347 EIVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQG- 399 Query: 445 HNIGDIIKVRIT 456 N G+II+ +T Sbjct: 400 -NAGEIIERIVT 410 >gi|51246808|ref|YP_066692.1| hypothetical protein DP2956 [Desulfotalea psychrophila LSv54] gi|50877845|emb|CAG37685.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 434 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 119/448 (26%), Positives = 219/448 (48%), Gaps = 19/448 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSF 83 +R + + GC++N ++S D GY+ V ++AD I++NTC + A A+ +S Sbjct: 2 KRISITTLGCKVNQFESASFSDNLSQTGYKIVGHNEEADYIIINTCTVTAAASAQSRHSI 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN---VVVGPQTYYRLPELL 140 +R ++I ++ GC + EEI + ++G ++ + + Sbjct: 62 RHALRLSPTAKI--------IITGCYVEIGAEEIQAIEELRGREYHIIGNSCKDQVVDTI 113 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R+ ++++ D + RL + G +R R +L IQ+GC FCT+C+VP+TRG Sbjct: 114 -RSTGAEQLILGDIRKAKEICRLPVRHFG-DRTR---TYLRIQDGCQSFCTYCIVPFTRG 168 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S L +V+ + R + G E L G ++ W G L G + TF+DLL LS Sbjct: 169 PSRSLPLDEVIAQTRAFAEEGYQETVLTGIHIGEW-GHDLKGGE-TFTDLLDRLSAEVPQ 226 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R R ++ P +++ +++ + P+LH+P+QSGSD+IL MNR + + II+ Sbjct: 227 MRFRISSLEPTEINARILELIKTRANIFPHLHIPLQSGSDQILARMNRHYDTARFAGIIE 286 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 P++ I D + GFPGE+++ F + + K+ + F YS R GT + + Sbjct: 287 ACHQAIPNLCIGIDVLAGFPGESEEHFASAYSFLQKLDFTYLHVFPYSIRPGTKAAEFTD 346 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 QV ++KA R+ L+ ++ +F +G+ + V +E + G L G + V Sbjct: 347 QVASDIKAIRVKKLRALSDTKKSAFYQKQIGKTLPVQVEGKRAKDGLLRGYTDNYTLVHF 406 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + + + + + + +YG+LV Sbjct: 407 AGADDLVRSSVDITLLENRDEYVYGKLV 434 >gi|254713652|ref|ZP_05175463.1| elongator protein 3 [Brucella ceti M644/93/1] gi|254715994|ref|ZP_05177805.1| elongator protein 3 [Brucella ceti M13/05/1] gi|261217762|ref|ZP_05932043.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261321390|ref|ZP_05960587.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|260922851|gb|EEX89419.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261294080|gb|EEX97576.1| conserved hypothetical protein [Brucella ceti M644/93/1] Length = 427 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 128/432 (29%), Positives = 212/432 (49%), Gaps = 34/432 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S M+ + G + ++ D I+ NTC + +A + + + R Sbjct: 7 TFGCRLNTYESEVMKREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144 +E D ++V GC AQ E + V++V+G + +Y LP+ + + Sbjct: 61 -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDF-DVNQ 113 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 F K V+ V + + VD R R AF+ +Q GCD CTFC++PY RG S Sbjct: 114 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 168 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + VVD+ ++L+ NG E+ L G ++ ++ G L G + L+++ L RLR Sbjct: 169 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPGNLRLGKLVKTVLAQVPDLQRLR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ + + L++A LMP+LHL +Q+G D ILK M RRH + + R+ Sbjct: 228 LSSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +RPDI +D I GFP ET++ F+ ++ +V++ G F YSPR GTP + M QV Sbjct: 288 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 346 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + ER L+ + +A G +L+EK G V R+ ++ Sbjct: 347 EIVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQG- 399 Query: 445 HNIGDIIKVRIT 456 N G+II+ +T Sbjct: 400 -NAGEIIERIVT 410 >gi|307721185|ref|YP_003892325.1| MiaB-like tRNA modifying enzyme [Sulfurimonas autotrophica DSM 16294] gi|306979278|gb|ADN09313.1| MiaB-like tRNA modifying enzyme [Sulfurimonas autotrophica DSM 16294] Length = 424 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 126/435 (28%), Positives = 222/435 (51%), Gaps = 29/435 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + K++GC+ N+YDS M M + YE + D+AD+IV+N+C + A V S++ Sbjct: 11 KKVYFKTFGCRTNLYDSQVM--MSSLKEYEITQNEDEADVIVINSCTVTNGADTHVRSYI 68 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +I K G + + GC A +GE +L+ + I + V G ++ LL + + Sbjct: 69 SQIE-------KNNGGAKLFLTGCGAHTKGESLLKENRI-HGVFGQSEKQKIDTLLAKEK 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 D ++ ++D +VD + R AF+ IQEGC+ C++C++PY RG S Sbjct: 121 PFYEPGDLNH-IDD-----MVVDEFVGKSR---AFIKIQEGCNFRCSYCIIPYVRGDARS 171 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 ++++++ +L NG E L G NV ++ G D K + + L+ +S+I+G+ R+R Sbjct: 172 MDENRILEQVARLAINGFGEFILTGTNVGSY---GQD-TKTSLAKLMKKMSQIRGVRRIR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + P ++D K D + ++H+ +Q S +LK MNRR+ + +++ + + Sbjct: 228 LGSVEPIQITDEF-KEILDEPWMEKHMHIALQHTSPTMLKLMNRRNVYKQDKELFELL-- 284 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 AI +DFI G PGE++ +R M + +F YS R GTP + M +V+ Sbjct: 285 ADKGYAIGTDFITGHPGESEALWREAMINAKDLPLTHIHAFTYSKRDGTPSAVMKPEVNG 344 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + ERL LQ + ++ F +A G+ +EVLIE H + G G +V+ S Sbjct: 345 KIAKERLHELQALIADKNFDFRNAYKGE-LEVLIESH--KDGLYHGFDQHFNKIVVESNE 401 Query: 445 HNIGDIIKVRITDVK 459 +G+ I + +VK Sbjct: 402 DLVGNWINIEKYEVK 416 >gi|257455349|ref|ZP_05620584.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60] gi|257447311|gb|EEV22319.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60] Length = 495 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 128/437 (29%), Positives = 213/437 (48%), Gaps = 39/437 (8%) Query: 10 VAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69 AH ++Q + P+ FV S GC + DS R+ GY+ + D ADL+V+NT Sbjct: 37 TAHQLAQDIATTKAPKIGFV-SLGCPKALVDSERIITELSRDGYQVASDYDGADLVVVNT 95 Query: 70 CHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129 C E A ++ +G KN + V+V GC+ + + E+I P V V G Sbjct: 96 CGFIESAVQESLDAIGEAIT-KNGK--------VIVTGCLGK-DAEKIKTMHPAVLAVTG 145 Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189 Y + + K Y + K + ++ D G A++ I EGC+ Sbjct: 146 AHAYEEVVNAVSH-YVPKPAPSKTY--DPKIDLIN--DAGIKLTPKHYAYVKISEGCNHR 200 Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGK 238 CTFC++P RG +SR + ++ EA L + GV E+ ++ Q+ +A W G Sbjct: 201 CTFCIIPSFRGDLVSRPIDSIMTEAAALKNAGVKELLIISQDTSAYGVDLKYKTSFWNGM 260 Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 + K F D+ +L+ + VRL Y +P D ++K + D L+PYL +P Q Sbjct: 261 PI---KSKFYDMCEALNRLGIWVRLHYIYPYPH--VDAVVKLMSE-DKLLPYLDIPFQHA 314 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 S +LK+M R + + I RS+ PDI I S F+VGFPGET++DF +D + + Sbjct: 315 SPNVLKAMKRPAHSENVLERIKTWRSICPDIVIRSTFVVGFPGETEEDFEYLLDWLKEAR 374 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIE 415 + +F YS G +++ V E +K ERL+ LQ+++ ++++ VG+ ++ Sbjct: 375 LDRVGAFTYSEIEGAAANDLPNPVPEAIKQQRYERLMALQQQISAEKLAEK---VGKTLK 431 Query: 416 VLIEKHGKEKGKLVGRS 432 VL+++ +E+ + RS Sbjct: 432 VLVDEIDEEENIAICRS 448 >gi|89052810|ref|YP_508261.1| MiaB-like tRNA modifying enzyme [Jannaschia sp. CCS1] gi|88862359|gb|ABD53236.1| MiaB-like tRNA modifying enzyme [Jannaschia sp. CCS1] Length = 419 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 130/440 (29%), Positives = 209/440 (47%), Gaps = 53/440 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M +M G E + +V+NTC + +A K + ++R Sbjct: 8 TLGCRLNAYETEAMREMTAQAGLE--------NAVVVNTCAVTAEAVRKARQEIRKLR-- 57 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELL---- 140 ++ V+V GC AQ E V++V+G P+T+ +P Sbjct: 58 -----RDSPGAKVIVTGCAAQTE-PATFEAMEEVDLVLGNSEKMTPETWQAMPADFIGNT 111 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 E+ R VD SV + + L +DG R R A++ +Q GCD CTFC++PY RG Sbjct: 112 EKVR-----VDDIMSVTETAQHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRG 161 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S VVD+ ++L+D G E+ L G ++ +W G L ++ L + L Sbjct: 162 NSRSVPAGVVVDQIKRLVDRGYNEVVLTGVDMTSW-GADLPAAPRLGDLVMRILKLVPDL 220 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ ++ D L++A LMP+LHL +Q G D ILK M RRH + + Sbjct: 221 PRLRISSIDSIEVDDALMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIAFCE 280 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R +RP+I +D I GFP ET+ F+ ++ LV++ F YSPR GTP + M Sbjct: 281 EARRLRPEITFGADIIAGFPTETEAHFQNSVKLVEECDLTWLHVFPYSPREGTPAARMPA 340 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 +KA K+LR + + +A +GQ+ +L+E +GR+ Sbjct: 341 VDGPTIKAR-----AKQLRAKGEAAVNAHLSKQIGQLHNILME------SPKIGRTEQFT 389 Query: 437 SVVLNSKNHNIGDIIKVRIT 456 VV +++ G+I+ IT Sbjct: 390 EVVF-AEDQPEGEIVSAYIT 408 >gi|99034401|ref|ZP_01314414.1| hypothetical protein Wendoof_01000782 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|225630069|ref|YP_002726860.1| MiaB-like tRNA modifying enzyme [Wolbachia sp. wRi] gi|225592050|gb|ACN95069.1| MiaB-like tRNA modifying enzyme [Wolbachia sp. wRi] Length = 408 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 130/439 (29%), Positives = 222/439 (50%), Gaps = 36/439 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S +++ E V +V+++C + +A +V + +I Sbjct: 4 VITFGCRLNFYESELIKEALKKAKRENV--------VVVHSCAVTNEAERQVKQKIRKI- 54 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 KN KE ++V GC Q + E + P V+ V+G Q + L + Sbjct: 55 -YKNDPNKE-----IIVVGCAVQLDPE-VYSSIPGVSKVLGNQDKLKAENYLLN---DDK 104 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ +D VE +++G ++ R AF+ IQ GC+ CTFC + RG S ++ Sbjct: 105 ILVSDNQVEP-----VLINGFEDKSR---AFIEIQNGCNHSCTFCSITEARGNNRSVPIN 156 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++++ R ++NG E+ G ++ + G L G+ S + L +I L RLR ++ Sbjct: 157 SIIEQIRIFVENGYQEVVFTGVDITDF-GTDLLGKPSLGSMIRRVLKDIPELKRLRLSSI 215 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++ D L+ + LMP+LHL +QSG++ ILK M RRH + + +++S+RP+ Sbjct: 216 DVAEVDDELMDLIANESRLMPHLHLSLQSGNNLILKRMKRRHNREQVIEFCHKMKSLRPN 275 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 IA +D I GFP ETD+ F+ T+DL+ K +F YS R TP + M QV ENV+ Sbjct: 276 IAFGADIIAGFPTETDEMFQDTVDLLKKTNIVYLHAFPYSERKNTPAARM-PQVPENVRK 334 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 ER+ L++ +E SF + + VL+E++ VGR+ + L SK Sbjct: 335 ERVKNLREVNKEIMSSFCQSLINTKQSVLVEQNN------VGRAENFALIKLESKAQ-AK 387 Query: 449 DIIKVRITDVKISTLYGEL 467 I+KV + V+ + L G + Sbjct: 388 SIVKVNVKGVENNYLIGNI 406 >gi|15892503|ref|NP_360217.1| hypothetical protein RC0580 [Rickettsia conorii str. Malish 7] gi|15619661|gb|AAL03118.1| unknown [Rickettsia conorii str. Malish 7] Length = 421 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 115/400 (28%), Positives = 199/400 (49%), Gaps = 37/400 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N+Y+S + G + V + NTC + + A ++ + R + Sbjct: 14 VVTFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAVTKAAEKQARQAIRRAK 65 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143 K DL ++V GC AQ ++ P V+ V+G + YY++ + Sbjct: 66 -------KNNPDLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLPNYYQITD----- 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K V+ SV++ L +R AF+ +Q GCD FCTFC++PY RG Sbjct: 113 --AKITVNDIMSVKETASHLVSSFDCKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSR 165 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262 S ++ + ++ + L+ NG E+ G +V A+ G L G TF+ ++ L+ + L R Sbjct: 166 SVAIGAIAEQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPELKR 223 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ D L + + +MP+ H+ +Q+G D ILK M RRH + ++ Sbjct: 224 LRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKL 283 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R++RP+++ +D I GFP ET + F T L+ + F YS R GTP + M QV Sbjct: 284 RAIRPEVSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARM-PQV 342 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 +N++ ER L+++ + Q F +GQ +E+L+E + Sbjct: 343 PKNIRKERAAILRQEGQNQLTEFFKKHIGQKVELLVENNN 382 >gi|256827193|ref|YP_003151152.1| MiaB-like tRNA modifying enzyme [Cryptobacterium curtum DSM 15641] gi|256583336|gb|ACU94470.1| MiaB-like tRNA modifying enzyme [Cryptobacterium curtum DSM 15641] Length = 409 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 125/401 (31%), Positives = 202/401 (50%), Gaps = 34/401 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSF 83 R+ + + GC++N +S D +Q +R DD D++V+NTC + +A +K Sbjct: 2 RYTIINLGCKVNRVES----DTIAAQLEDRGAITDDRYPDVVVINTCTVTGEAEKKTRKT 57 Query: 84 LGR-IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + R +R+ +R VVV GC A + +E L V VV G + Sbjct: 58 VRRALRDFMGARS-------VVVTGCAAALDPDEFLSMDERV-VVCGKN---------QV 100 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A V + + ++ R G + + G L IQ+GC CTFC+V RG Sbjct: 101 ADTCFEAVHEEPLIAEEVRRHLRFGGDFPTRVG----LKIQDGCSAACTFCIVHVARGKA 156 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR L V+ EA +L D GV E+ L G N+ + + + + L + +R Sbjct: 157 FSRPLPDVLREAHELYDAGVREVVLTGINLGTYTSNNAN-----LAKVAQQLIDEMPKLR 211 Query: 263 LRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R ++ P +D LI+ + + +LHLP+QSGS ++L M R ++A ++ I++R Sbjct: 212 VRISSIEPLHATDELIEVLSRQEGRVCRHLHLPLQSGSSKVLHEMARPYSAEQFLSIVER 271 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ P++++S+D IVGFPGETD DF+AT+D+V +++ F+YS R GTP + +Q Sbjct: 272 IRTAVPEVSLSTDIIVGFPGETDQDFQATLDMVRACRFSKVHVFRYSKRAGTPAAARTDQ 331 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 +D V A R L + RE + +G +VL+E HG Sbjct: 332 IDSLVSANRSHILSELAREVRWQEATRRIGTSEDVLVESHG 372 >gi|57641999|ref|YP_184477.1| 2-methylthioadenine synthetase [Thermococcus kodakarensis KOD1] gi|57160323|dbj|BAD86253.1| probable 2-methylthioadenine synthetase [Thermococcus kodakarensis KOD1] Length = 427 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 131/445 (29%), Positives = 221/445 (49%), Gaps = 27/445 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R +V+SYGC N D ME + GYE S + AD +V+NTC +++ K+ Sbjct: 3 RVYVESYGCTRNKADGEIMEAILLRAGYELAESPESADYVVVNTCAVKDPTEHKMAR--- 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIR L +S K V+ GC+ + I P V+ ++G ++ R+ E ++ A Sbjct: 60 RIRELLDSGKK------VIATGCLVHVNPDVI---DPRVSGMLGVKSIDRIAEAIDLAER 110 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G ++V + E K ++L + K GV + I EGC CT+C + RG+ S Sbjct: 111 GGKLVSVEGWKERKVDKLELPR---LWKSGVVFVVPISEGCLNACTYCATRFARGVLKSY 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 V+ ++ + G EI L ++ + G D ++LL ++ I+G R+R Sbjct: 168 KPELVLKWVKEALARGYKEIQLSSEDTGCY---GFD-IGTNLAELLDEITAIEGDFRIRV 223 Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +P + D LI+ + D V +LHLPVQSG + +L+ M R +T E+ +I+ Sbjct: 224 GMMNPNHVIKFLDELIEVYQDPKVYK-FLHLPVQSGDNEVLRRMGRNYTVEEFEEIVSEF 282 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P + +++D IVGFPGE ++ F+ T++LV ++ + +YSPR GT + + Sbjct: 283 RRKIPGLNLNTDIIVGFPGEGEEAFQNTVELVKRVRPDKINVSRYSPRPGTIAAKWKQLP 342 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 VK ER L + + N +G+ +EVL+ G EKG + R+ + ++L++ Sbjct: 343 GWKVK-ERSRILHRLRLQIAYEINQTYLGKKVEVLVHGPG-EKGGIDARTFNYKEIILDA 400 Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467 G+I + +IT + L GE+ Sbjct: 401 GEK--GEITRAKITWAGSTYLRGEM 423 >gi|310814822|ref|YP_003962786.1| MiaB-like tRNA modifying enzyme [Ketogulonicigenium vulgare Y25] gi|308753557|gb|ADO41486.1| MiaB-like tRNA modifying enzyme [Ketogulonicigenium vulgare Y25] Length = 422 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 117/367 (31%), Positives = 183/367 (49%), Gaps = 32/367 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+D+ G + +V+NTC + +A K + ++R Sbjct: 10 TLGCRLNAYETEAMKDLAARAGV--------SGAVVVNTCAVTSEAVRKARQEIRKLR-- 59 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLERA 143 +E D ++V GC AQ E E V+ V+G P+T+ + P+L+ R Sbjct: 60 -----REHPDKKIIVTGCAAQTEPETFTAMGE-VDFVIGNTEKMKPETWAAMAPDLIGRT 113 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + VD SV++ L +DG R R A++ +Q GCD CTFC++PY RG Sbjct: 114 EPVQ--VDDIMSVKETAGHL--IDGFGTRAR---AYVQVQNGCDHRCTFCIIPYGRGNSR 166 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S VVD+ ++L+D G E+ L G ++ +W G L ++ L + L RL Sbjct: 167 SVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPATPRLGDLVMRILKLVPDLPRL 225 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ + + L++A LMP+LHL +Q+G + ILK M RRH + + + R Sbjct: 226 RISSIDSIEADEMLMQAIATEQRLMPHLHLSLQAGDNMILKRMKRRHMREDAIRFCEEAR 285 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +RPD+ +D I GFP ET+ F ++ LV G F YSPR GTP + M QV+ Sbjct: 286 VLRPDMTFGADIIAGFPTETEAMFENSLKLVQDCGLTWLHVFPYSPRKGTPAARM-PQVN 344 Query: 384 ENVKAER 390 N ER Sbjct: 345 GNAIRER 351 >gi|42520370|ref|NP_966285.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410108|gb|AAS14219.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Drosophila melanogaster] Length = 408 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 130/439 (29%), Positives = 222/439 (50%), Gaps = 36/439 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S +++ E V +V+++C + +A +V + +I Sbjct: 4 VITFGCRLNFYESELIKEALKKAKRENV--------VVVHSCAVTNEAERQVKQKIRKI- 54 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 KN KE ++V GC Q + E + P V+ V+G Q + L + Sbjct: 55 -YKNDPNKE-----IIVVGCAVQLDPE-VYSSIPGVSKVLGNQDKLKAENYLLN---DDK 104 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ +D VE +++G ++ R AF+ IQ GC+ CTFC + RG S ++ Sbjct: 105 ILVSDNQVEP-----VLINGFEDKSR---AFIEIQNGCNHSCTFCSITEARGNNRSVPIN 156 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++++ R ++NG E+ G ++ + G L G+ S + L +I L RLR ++ Sbjct: 157 SIIEQIRIFVENGYQEVVFTGVDITDF-GTDLLGKPSLGSMIRRVLKDIPELKRLRLSSI 215 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++ D L+ + LMP+LHL +QSG++ ILK M RRH + + +++S+RP+ Sbjct: 216 DVAEVDDELMDLIANESRLMPHLHLSLQSGNNLILKRMKRRHNREQVIEFCHKMKSLRPN 275 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 IA +D I GFP ETD+ F+ T+DL+ K +F YS R TP + M QV ENV+ Sbjct: 276 IAFGADIIAGFPTETDEMFQDTVDLLKKTNIVYLHAFPYSERKNTPAARM-PQVPENVRK 334 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 ER+ L++ +E SF + + VL+E++ VGR+ + L SK Sbjct: 335 ERVKNLREVNKEIMSSFCQSLINTKQSVLVEQNN------VGRTENFALIKLESKAQ-AK 387 Query: 449 DIIKVRITDVKISTLYGEL 467 I+KV + V+ + L G + Sbjct: 388 SIVKVNVKGVENNYLIGNI 406 >gi|116747616|ref|YP_844303.1| RNA modification protein [Syntrophobacter fumaroxidans MPOB] gi|116696680|gb|ABK15868.1| RNA modification enzyme, MiaB family [Syntrophobacter fumaroxidans MPOB] Length = 440 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 119/432 (27%), Positives = 213/432 (49%), Gaps = 12/432 (2%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ V++ GC++N Y+S M + ++ V+ ADL V+++C + AA F Sbjct: 4 KKVAVETLGCKVNQYESSVMMESLMQANWQPVSFKGAADLYVVHSCAVTSSAA-----FQ 58 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + R+ G L+ V GC AQ + + L + ++G + + +E Sbjct: 59 TRQLLRRARRLNPGA--LIAVVGCDAQLDHDR-LAAGELATHILGTAEKFDIARWIEVPA 115 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V D RLS A+L +Q+GC+ +C++CVVPYTRG S Sbjct: 116 SFAAPCRAVKGVND-IPRLSAQAVSCMHTGRTRAYLKVQDGCNAYCSYCVVPYTRGRSRS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 +V+ R+ ++ G E+ L G ++ W GK L + + LL + + R+R Sbjct: 175 LPADEVLSRLRRFVEVGYREVILTGIHLGQW-GKDLTPTR-DLAGLLDRIGDSDSPPRVR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P + S L++ + + P+ H+P+QSG D +L +M+R +TA +Y +I +R Sbjct: 233 LSSLEPLEWSAGLLRRISTVPWICPHFHIPLQSGDDDVLAAMHRPYTALQYANLIRELRM 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + P+ A+ +D +VGFPGET F T+ LV+++ F +SPR GTP ++M ++ Sbjct: 293 LFPEAALGADVMVGFPGETQRRFLNTLHLVEELPLTYLHVFPFSPRPGTPAADMPGRIPG 352 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQSVVLNSK 443 + +R LQ ++ F++ +G+ +EVL+E G L G + +LQ + Sbjct: 353 DETKKRARLLQDIGTRKRRQFSERFLGRSVEVLVESAAPRAGWLRGTTANYLQVLFPAGP 412 Query: 444 NHNIGDIIKVRI 455 G I++V++ Sbjct: 413 PVLPGSIVRVQV 424 >gi|308270514|emb|CBX27126.1| Ribosomal protein S12 methylthiotransferase rimO [uncultured Desulfobacterium sp.] Length = 446 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 121/446 (27%), Positives = 214/446 (47%), Gaps = 15/446 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSF 83 + +++S GC N+ DS M G+ V+ A I++NTC E A +E V + Sbjct: 10 KNIYLESLGCARNLVDSELMLGRLADAGFNIVSDPAKARTILINTCSFIEAAISESVDTI 69 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L + +N + + ++V GC+ + E+I++ P V+ +G Y ++ + +E Sbjct: 70 LELAKYKRNGKCRR-----IIVTGCLPERFREKIIKTLPEVDFFLGTGAYSKILQAVEGI 124 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 ++ D + LS R A+L I EGC + CT+C++P RG + Sbjct: 125 PIASGILLPDPGLTT----LSYNAETRIRTDPNIAYLKISEGCSRRCTYCIIPKLRGKQR 180 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + VV EA+ LI++GV E+ L+ Q+ ++ GK + G + + L+ +S + + + Sbjct: 181 SREIEDVVLEAKSLIESGVKELILVAQD-TSYYGKDM-GSSVSLAKLIERISGLSDDIWI 238 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R HP + IKA + PY +P+Q + +ILK M R + + ++ D+IR Sbjct: 239 RILYGHPESIETDAIKAIACTHNVCPYFDIPIQHVNSKILKRMGRNYNQTKLLKLFDKIR 298 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S D + + I GFPGETD DF + ++ + + +F YS N+ E+V Sbjct: 299 SYDSDAVLRTTVITGFPGETDKDFAELLSFIETVKFDHLGTFIYSDSKDIASHNLSEKVR 358 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVL 440 +NV +R + E N +G++ +VL+E +EK G+ ++P + + Sbjct: 359 KNVAKKRYDRIMSSQMEISYHKNRRHIGKVFDVLVEGFPEEKLYIGRTKYQAPDVDGITY 418 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGE 466 S G +++ +ITD L GE Sbjct: 419 ISGELKTGSLVRTKITDALEYDLIGE 444 >gi|157828452|ref|YP_001494694.1| hypothetical protein A1G_03275 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933167|ref|YP_001649956.1| tRNA 2-methylthioadenosine synthase-like protein [Rickettsia rickettsii str. Iowa] gi|157800933|gb|ABV76186.1| hypothetical protein A1G_03275 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908254|gb|ABY72550.1| tRNA 2-methylthioadenosine synthase-like protein [Rickettsia rickettsii str. Iowa] Length = 421 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 119/400 (29%), Positives = 199/400 (49%), Gaps = 37/400 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N+Y+S + G + V + NTC + KAAEK + R Sbjct: 14 VVTFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAV-TKAAEK------QAR 58 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143 K DL ++V GC AQ ++ P V+ V+G + YY++ + Sbjct: 59 QAIRKAKKNNPDLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLPNYYQITD----- 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K V+ SV++ L +R AF+ +Q GCD FCTFC++PY RG Sbjct: 113 --AKITVNDIMSVKETASHLVSSFDCKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSR 165 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262 S ++ + ++ + L+ NG E+ G +V A+ G L G TF+ ++ L+ + L R Sbjct: 166 SVAIGAIAEQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPELKR 223 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ D L + + +MP+ H+ +Q+G D ILK M RRH + ++ Sbjct: 224 LRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKL 283 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R++RP+++ +D I GFP ET + F T L+ + F YS R GTP + M QV Sbjct: 284 RAIRPEVSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARM-PQV 342 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 +N++ ER L+++ + Q F +GQ +E+L+E + Sbjct: 343 PKNIRKERAAILRQEGQNQLTEFFKKHIGQKVELLVENNN 382 >gi|167752159|ref|ZP_02424286.1| hypothetical protein ALIPUT_00401 [Alistipes putredinis DSM 17216] gi|167660400|gb|EDS04530.1| hypothetical protein ALIPUT_00401 [Alistipes putredinis DSM 17216] Length = 433 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 129/445 (28%), Positives = 213/445 (47%), Gaps = 18/445 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + GC++N +S + F + G+ RV + AD+ V+N+C + E A +K Sbjct: 4 RRVNFHTLGCKLNFSESSTLAREFEAGGFIRVGVSEAADISVINSCSVTEHADKKC---- 59 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 RNL + ++VV GC AQ + +EI + V+ EL R Sbjct: 60 ---RNLIRKIHRRNPAAIIVVTGCYAQLKPQEIASIEGVDLVLSNNDK----GELFRRVA 112 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++ D E L+ ++ AFL +Q+GCD C +C + Y RG + Sbjct: 113 ALAGKGPAQFTSCDA-EELTNFFAAFSSGDRTRAFLKVQDGCDYKCAYCTIHYARGASRN 171 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 ++ +V EA ++ G EI + G N + G+ GE+ F DLL +L+E++G+ R R Sbjct: 172 MPIADLVKEAEQIAAAGQREIVITGINTGDF-GR-TTGER--FIDLLRALNEVEGIERYR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P ++D +I + H+P+QSGSD +L M RR+T ++ + I+ +R Sbjct: 228 ISSIEPNLLTDEIIAFCASSPKFQHHFHIPLQSGSDSVLARMRRRYTTEKFAERIEAVRR 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + PD I D IVGFPGET+ DFR T + ++++ A F +S R GTP + ++V Sbjct: 288 LMPDAFIGIDVIVGFPGETESDFRTTYEFLERLAPAYLHIFPFSERPGTPAVDFPDKVQP 347 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +V R+ L++ R F G EVL E + G + G + + V Sbjct: 348 SVATRRVEELEELCRRLHGEFCARAEGTTDEVLFESTMR-GGMMFGYTGNYRRVKAPYDR 406 Query: 445 HNIGDIIKVRITDV-KISTLYGELV 468 I I +VR+ + + L GE+V Sbjct: 407 SRINTICRVRLGRMDDANDLEGEIV 431 >gi|254479999|ref|ZP_05093247.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [marine gamma proteobacterium HTCC2148] gi|214039561|gb|EEB80220.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [marine gamma proteobacterium HTCC2148] Length = 441 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 134/460 (29%), Positives = 214/460 (46%), Gaps = 45/460 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ S GC + DS R+ GY+ V S DA+++V+NTC + A ++ + Sbjct: 7 QKVGFISLGCPKALVDSERILTQLKMDGYDIVPSYQDAEVVVVNTCGFIDSAKQESLDAI 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPELLERA 143 G I E G V+V GC+ + + I+ P V V GP Y + Sbjct: 67 GEA-------ISENGK--VIVTGCMGKGDDANSIMELHPKVLAVSGPAAYEEV-----VG 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + V + D + L G R A+L I EGC+ C+FC++P RG + Sbjct: 113 AVHEYVPPNPH--HDPYTDLVPPQGIKLTPRHY-AYLKISEGCNHRCSFCIIPDMRGDLV 169 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V++EA +L+ GV E+ ++ Q+ +A W G+ L K L Sbjct: 170 SRPIGDVMEEAERLVRAGVRELLVISQDTSAYGIDTKFRTGFWNGRPL---KTHMQQLCE 226 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +L++ VRL Y +P + A G + +PYL +P+Q GS +LK M R A Sbjct: 227 ALADFGVWVRLHYVYPYPHVDKVIPLMAEGKI---LPYLDVPLQHGSPDVLKRMKRPAAA 283 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + + I RSV PDI + S FIVGFPGETD DF +D +D+ + F+YSP G Sbjct: 284 EKSLERIQAWRSVCPDITLRSTFIVGFPGETDKDFDILLDFIDEAQLDRVGCFQYSPVKG 343 Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427 +++ V E +K ER + LQ+++ ++ +G IE+LI++ E G+ Sbjct: 344 ARANDLPNHVPEELKQERWERFMALQQEISTAKLQQK---LGSTIEILIDEVDSEGAIGR 400 Query: 428 LVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465 +P + V + + N GD+++ +T L+ Sbjct: 401 SSADAPEIDGKVFLDGATDLNPGDLVEAEVTAANEYDLWA 440 >gi|261403097|ref|YP_003247321.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7] gi|261370090|gb|ACX72839.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7] Length = 414 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 132/450 (29%), Positives = 231/450 (51%), Gaps = 43/450 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +V+ YGC +N D+ +++ +G+E V+ +D AD+ V+NTC +R + ++ + Sbjct: 2 KKVYVEGYGCVLNSADTEIIKNALREEGFEIVDELDRADVAVINTCVVRLETENRMIYRI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143 ++NL G D VVVAGC+ +A E++ I P+ ++ ++L+ Sbjct: 62 NELKNL-------GKD--VVVAGCLPKALKEKVKGFLHIY-----PREAHKAGKILKIYI 107 Query: 144 RFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + GKRV ++ D S+ K + ++ + L I EGC CT+C+V RG Sbjct: 108 KSGKRVEGLEDDKSLHKKLDYIT---------SSLITPLPICEGCLGHCTYCIVKIARGN 158 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 IS ++V +A +LI G I + Q+ + G D ++LL L I+G Sbjct: 159 LISYPREKIVKKAEELIKKGTKCIFITAQDTACY---GFDRND-NLANLLNDLCNIEGDF 214 Query: 262 RLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 +R H +++ D LI+ + D + +LHLP+QSG D ILK M R +T E+++I Sbjct: 215 IMRVGMMHAKNVEEIIDELIEVY-KTDKVGKFLHLPLQSGDDEILKKMRRGYTVDEFKEI 273 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++ R ++ ++D IVGFPGET++ F T++++ ++ KYS R GT + M Sbjct: 274 VNEFRKKVKNLCFTTDIIVGFPGETEEQFENTLNILKELKPDYIHGAKYSQRKGTEAAKM 333 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 +QVD ++ +R L K RE N +G+ ++ LI + GK G + + Sbjct: 334 -KQVDTKIRKQRSEILDKLRRELSYINNKKYIGKKLKTLILEEGK------GYTENFK-- 384 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V+ + +IG+ KV+I D K L G+++ Sbjct: 385 VVKFEGGSIGNFKKVKIVDAKTFGLVGKII 414 >gi|195027257|ref|XP_001986500.1| GH20489 [Drosophila grimshawi] gi|193902500|gb|EDW01367.1| GH20489 [Drosophila grimshawi] Length = 554 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 133/467 (28%), Positives = 230/467 (49%), Gaps = 42/467 (8%) Query: 16 QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 +I+ + ++P Q+ +VK++GC N DS M S GY +++ ++ADL +LN+C ++ Sbjct: 62 KIIHESVIPGTQKVYVKTWGCAHNNSDSEYMAGQLASFGY-KLSGKNEADLWLLNSCTVK 120 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQT 132 + + RN + ++ G VVVAGCV Q A + LR V+G Q Sbjct: 121 NPSEDT-------FRNEIEAGMRNGKH--VVVAGCVPQGAPKSDYLRGL----SVIGVQQ 167 Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 R+ E++E G V + + V + + + RK + ++I GC CT Sbjct: 168 IDRVVEVVEETLKGHSVRLLQNKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCT 227 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 +C + RG S +++VD AR+ D G CEI L ++ A+ G+ + + +LL Sbjct: 228 YCKTKHARGDLASYPPAEIVDRARQSFDEGCCEIWLTSEDTGAY-GRDIGS---SLPELL 283 Query: 252 YSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 + L E+ G+ Y H +++ L + +LH+PVQSGSD +L Sbjct: 284 WQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYAFLHVPVQSGSDSVL 338 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 M R + ++ ++D +RS P + I++D I GFP ET+ DF TM L +K + F Sbjct: 339 GEMKREYCRKDFEHVVDFLRSRVPGLTIATDIICGFPTETEQDFEETMTLCEKYQFPSLF 398 Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKH 421 ++ PR GTP + M E++ N+ +R K+L + S+ GQ+ VL+ + Sbjct: 399 INQFFPRPGTPAAKM-ERIPANLVKKRT----KRLTDLFYSYEPYAGREGQLYTVLVTEI 453 Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +K VG + + V+L + + +G ++VRIT ++ GE++ Sbjct: 454 SHDKLHYVGHNKSYEQVLLPMRKNLLGTRVRVRITSSSKFSMMGEIL 500 >gi|34580504|ref|ZP_00141984.1| hypothetical protein [Rickettsia sibirica 246] gi|28261889|gb|EAA25393.1| unknown [Rickettsia sibirica 246] Length = 416 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 120/400 (30%), Positives = 201/400 (50%), Gaps = 37/400 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N+Y+S + G + V + NTC + KAAEK + R Sbjct: 9 VVTFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAV-TKAAEK------QAR 53 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143 K DL ++V GC AQ ++ P V+ V+G + YY++ + Sbjct: 54 QAIRKAKKNNPDLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLPNYYQITD----- 107 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K V+ SV+ E S + ++ K AF+ +Q GCD FCTFC++PY RG Sbjct: 108 --AKITVNDIMSVK---ETASHLISSFDCKS--RAFIQVQNGCDHFCTFCIIPYGRGKSR 160 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262 S ++ + ++ + L+ NG E+ G +V A+ G L G TF+ ++ L+ + L R Sbjct: 161 SVAIGAIAEQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPELKR 218 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ D L + + +MP+ H+ +Q+G D ILK M RRH + ++ Sbjct: 219 LRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKL 278 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R++RP+++ +D I GFP ET + F T L+ + F YS R GTP + M QV Sbjct: 279 RAIRPEVSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARM-PQV 337 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 +N++ ER L+++ + Q F +GQ +E+L+E + Sbjct: 338 PKNIRKERAAILRQEGQNQLTEFFKKHIGQKVELLVENNN 377 >gi|256830661|ref|YP_003159389.1| MiaB family RNA modification protein [Desulfomicrobium baculatum DSM 4028] gi|256579837|gb|ACU90973.1| RNA modification enzyme, MiaB family [Desulfomicrobium baculatum DSM 4028] Length = 429 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 120/407 (29%), Positives = 206/407 (50%), Gaps = 40/407 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q FF+ + GC++N Y+S + + + G + AD++++N+C + E+A V Sbjct: 7 QLFFLTTQGCKVNQYESQAIREALVADGLMETHDPSLADIVLINSCAVTERA---VLDLA 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +R + K +VVAGC +A+ E IL +V+ V+ + L R Sbjct: 64 KLVRGFAAADPKP----WIVVAGCAVEADRERILALC-LVDEVIAQKDKAAL------VR 112 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ F LSI GY+R RGV + +Q+GC CT+C++P TRG +S Sbjct: 113 MGEPSA--------PFPALSI--SGYHRARGV---IKVQDGCSHGCTYCIIPATRGRSVS 159 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-----KG 259 R ++V+DEA +L++ G+ EI+L G N+ + G+ L G F DLL + + G Sbjct: 160 RPPAEVLDEAGRLLEAGIREISLCGINLRHY-GRDLPG-TTDFWDLLAEVDQALSPRWAG 217 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI- 318 RLR + P D++ + ++ P+LH+ +QSGS +L+ M R H Y QI Sbjct: 218 RARLRLGSLEPGDLNAKALSTLAQSRLMTPHLHISLQSGSPEVLRRMGRGH--YGLEQIF 275 Query: 319 --IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 + +R + P + +D I GFPGET T+++V ++ + A F YS R GTP + Sbjct: 276 AFLHDLRDIWPVFGLGADLIAGFPGETQSHADETLEVVKRLPLSYAHVFPYSERPGTPAA 335 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSF-NDACVGQIIEVLIEKHG 422 V +++ ER L++++ ++ F ++ ++V++E+ G Sbjct: 336 LFKGAVPGHIRRERAKALRREVARKRADFLHELLKLPFMDVILEEGG 382 >gi|83312146|ref|YP_422410.1| ribosomal protein S12 methylthiotransferase [Magnetospirillum magneticum AMB-1] gi|123767962|sp|Q2W2S4|RIMO_MAGSA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|82946987|dbj|BAE51851.1| 2-methylthioadenine synthetase [Magnetospirillum magneticum AMB-1] Length = 448 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 136/461 (29%), Positives = 222/461 (48%), Gaps = 53/461 (11%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + S GC + DS R+ ++GY+ S D AD++++NTC + A + +G Sbjct: 10 IVSLGCSKALVDSERILTKLRAEGYDISGSYDGADVVIVNTCGFLDSARAESLEAIGEA- 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS--PIVNVVVGPQTYYRLPELLERARFG 146 + E G V+V GC+ G+E RS P V V GP Y + E + A Sbjct: 69 ------LAENGK--VIVTGCMG---GDEKAIRSAHPSVLAVSGPHQYQAVVEAVHAAI-- 115 Query: 147 KRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + D +LS+V G + A+L I EGC+ C+FC++P RG +SR Sbjct: 116 -------PPLHDP--KLSLVPPEGLHLTPHHYAYLKISEGCNNSCSFCIIPDIRGPLMSR 166 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254 + V+ EA +L + GV E+ ++ Q+ +A WRG+ + + +DL +L Sbjct: 167 PAADVLGEAERLAEAGVRELLVISQDTSAYGLDLRHAESTWRGRPV---RAHLTDLASAL 223 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 E+ +RL Y +P + A G + +PYL +P Q S +LK+M R Sbjct: 224 GELGIWIRLHYVYPYPHVDEIIPLMAEGKI---LPYLDIPFQHASPNVLKAMRR---PAN 277 Query: 315 YRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 +++ RIRS R PD+ + S FIVGFPGET++DF + + +++ + FKY Sbjct: 278 QEKVLGRIRSWRETCPDLTLRSTFIVGFPGETEEDFDSLLGWLEEAQLDRVGCFKYEDVK 337 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429 G P + +QVDE+VK ER + R+ A G IEV+I++ +E G+ Sbjct: 338 GAPANAFADQVDEDVKEERHQRFMEAARQIADERGAAKEGTRIEVIIDEVDEEGAIGRSK 397 Query: 430 GRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 SP + V + ++ GD++ V + + L+G++V Sbjct: 398 ADSPEVDGAVFMNGETDLEPGDLVIVEVEAAEDYDLWGDVV 438 >gi|183221932|ref|YP_001839928.1| hypothetical protein LEPBI_I2571 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912001|ref|YP_001963556.1| 2-methylthioadenine synthetase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776677|gb|ABZ94978.1| 2-methylthioadenine synthetase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780354|gb|ABZ98652.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 429 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 118/396 (29%), Positives = 201/396 (50%), Gaps = 25/396 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N +++ M + +G+ ++A IV+NTC + KA K RN+ Sbjct: 7 TLGCRLNFFETDGMYTVLKDKGFTLATPDENAQYIVVNTCTVTNKADVKN-------RNI 59 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + I+ V V GC A+ + +E+L+ P V V G LP + GK Sbjct: 60 IRNAIRTNPGAKVFVTGCYAETD-KEVLQNIPGVYGVFGNTEKSSLPYQILADWEGK--- 115 Query: 151 DTDYSVEDKFERLSIVD---GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E +R S D G+ R A+L IQ+GC++ C++C +P RG+ +SR Sbjct: 116 --SYLPEKSLDRFSYSDVLPEGHTR-----AYLKIQDGCNRKCSYCKIPAARGLGVSRKY 168 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++D+ + L DNGV EI L G N+ +R + +GEK F +LL + ++ R+R ++ Sbjct: 169 DDILDQVKYLQDNGVGEIQLTGVNLGWYRLE--NGEK-GFLNLLEDILKVLEYSRIRLSS 225 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P D+ L+ +LH+P+QSGS +ILK M R + +R ++ +S P Sbjct: 226 IEPPDVGSGLLDLMSH-PRFCKFLHVPIQSGSRKILKEMRRTYHPDAFRTRMELAKSKLP 284 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 ++ + +D IVGFP ET+ +F+ T L+ ++G+A+ F YS R GT ++ + + + K Sbjct: 285 NLFLGTDVIVGFPSETEVEFQETKQLLIELGFAKLHVFPYSVRKGTTAESLGDPIPGDEK 344 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 R+L L S+ +G+ E ++E G+ Sbjct: 345 KRRVLELMALSSILHTSYAKTAIGKTFEAILENDGR 380 >gi|303243568|ref|ZP_07329910.1| MiaB-like tRNA modifying enzyme [Methanothermococcus okinawensis IH1] gi|302486129|gb|EFL49051.1| MiaB-like tRNA modifying enzyme [Methanothermococcus okinawensis IH1] Length = 428 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 128/455 (28%), Positives = 240/455 (52%), Gaps = 40/455 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++ YGC +N D++ +++ + + ++ V + +DAD++++NTC +R + K+ S Sbjct: 2 KKIYIEGYGCTLNAADTIIIKNSIVTFKDFQIVQNPEDADVVIINTCAVRLETEHKMIS- 60 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-- 141 RI++ K+ K VVVAGC+ +A E++ I +V++ P+ + +++ Sbjct: 61 --RIKHFKSLNKK------VVVAGCMPKALREKV---EDIGDVLIMPKEAHLSGKIVHDY 109 Query: 142 ----RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 G +++ ++DK + L+ N + + L I EGC CT+C+V Sbjct: 110 TTYNHCNIGGNN-NSNVDIDDKLKYLTPT----NPENSLIMPLPISEGCIGKCTYCIVKV 164 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG IS + + ++ +A + I+ GV I + Q+ + G D T +L+ ++ I Sbjct: 165 ARGRLISYNRNLLIKKAEEFINKGVKHILITSQDTACY---GFDKND-TLPNLINDIASI 220 Query: 258 KGLVRLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G +R H ++++ D LI ++ + D + +LHLP+QSG D++LK M R +T E Sbjct: 221 DGEFDMRIGMMHAKNVTQIMDELIASYQN-DKVSKFLHLPIQSGDDKVLKDMKRGYTVDE 279 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + I++ + D+ ++D IVGFP E +++F T++++ K+ KY+ R T Sbjct: 280 FIDIVNEFKRKVKDLNFNTDVIVGFPTEKEENFENTLEVLKKLNPDYIHGAKYTQRRHTE 339 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 + L+QVD V+ +R L K RE N +G+ ++VLI ++ K G + Sbjct: 340 AAK-LKQVDTKVRKKRSEILDKLRRELSYKNNKNYIGKTLKVLITENNK------GIAHN 392 Query: 435 LQSVVLNS-KNHNIGDIIKVRITDVKISTLYGELV 468 + V NS KN IG+ K++ITD K L+GE++ Sbjct: 393 CKVVKFNSDKNIKIGEFRKIKITDAKTFGLFGEIL 427 >gi|126175991|ref|YP_001052140.1| ribosomal protein S12 methylthiotransferase [Shewanella baltica OS155] gi|217971749|ref|YP_002356500.1| ribosomal protein S12 methylthiotransferase [Shewanella baltica OS223] gi|238066597|sp|A3D958|RIMO_SHEB5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|125999196|gb|ABN63271.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS155] gi|217496884|gb|ACK45077.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS223] Length = 472 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 137/454 (30%), Positives = 222/454 (48%), Gaps = 42/454 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ GYE NS +ADL+++NTC + A E+ L +R Sbjct: 39 SLGCPKNLVDSERILTQLRIDGYEVTNSYANADLVIVNTCGFIDAAVEES---LDAVREA 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E +I P V + GP +Y + K V Sbjct: 96 ----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV-----LKHVHKYVP 143 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 ++ + F L I G A+L I EGCD CTFC++P RG SR + Sbjct: 144 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPSLRGDLDSRPAGSI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSEIKGLV 261 +DEA++L+++GV EI ++ Q+ +A+ GK G K + L L ++ V Sbjct: 200 LDEAKRLVESGVQEILVVSQDTSAY-GKDKGGRTDFWNGMPVKQDITSLARQLGKMGAWV 258 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RL Y +P + A G +++PYL +P+Q S RILK M R + I R Sbjct: 259 RLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQR 315 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R + PD+ I S FIVGFPGET++DF+ +D + + + FKYS G + + E Sbjct: 316 WREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCFKYSEVDGAVANTIAEL 375 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ 436 + E+VK + R + +Q ++ ++++ VG+ +++LI+ +E G+ +P + Sbjct: 376 ISEDVKEDRYHRFMEVQAEISAERLA---RFVGRTLDILIDDVDEEGAIGRSFADAPEID 432 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +V + + G +++ RIT L+ E+V Sbjct: 433 GMVFINGETELEPGMLVRARITHSDEHDLWAEVV 466 >gi|224045698|ref|XP_002191115.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1 [Taeniopygia guttata] Length = 582 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 134/461 (29%), Positives = 222/461 (48%), Gaps = 41/461 (8%) Query: 22 IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 I+P Q+ +++++GC N D M + GY ++ +ADL +LN+C ++ A + Sbjct: 57 IIPGVQKIWIRTWGCSHNNSDGEYMAGQLAAYGYTITDNSAEADLWLLNSCTVKNPAED- 115 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPE 138 F I+ + + K VV+AGCV QA+ +E L+ I+ V Q R+ E Sbjct: 116 --HFRNSIKKAQEGKKK------VVLAGCVPQAQPRQEYLKGLSIIGV----QQIDRVVE 163 Query: 139 LLERARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 ++E G V +D +RL + +D RK + ++I GC CT+C Sbjct: 164 VVEETIKGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTK 222 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLS 255 + RG S + ++VD A++ GVCEI L ++ A+ R G D K LL+ L Sbjct: 223 HARGDLASYPIEELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPK-----LLWKLV 277 Query: 256 EI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 E+ G+ Y H +M+ L + +LH+PVQS SD +L M Sbjct: 278 EVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMDMK 332 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + +++Q++D ++ P I I++D I GFPGETD+DF+ TM LV+ + F ++ Sbjct: 333 REYCVADFKQVVDFLKEKVPGITIATDIICGFPGETDEDFQETMKLVELYRFPSLFINQF 392 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 PR GTP + M QV VK +R L + S D VG+ VL+ + + Sbjct: 393 YPRPGTPAAKM-PQVPAAVKKQRTKDLSQLF--HSYSPYDHKVGERQRVLVTEESFDSNY 449 Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V +P+ + V++ +G +++V I + + G+ V Sbjct: 450 YVAHNPFYEQVLVPKDPLLMGKMVEVDIYEAGKHFMKGQPV 490 >gi|25989454|gb|AAL82723.1| Fe-S oxidoreductase [Edwardsiella tarda] Length = 446 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 130/456 (28%), Positives = 220/456 (48%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY V + +DADL+++NTC + A ++ +G Sbjct: 19 SLGCPKNLVDSERILTELRTEGYLVVPTYEDADLVIVNTCGFIDSAVQESLEAIGEA--- 75 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + E G V+V GC+ E + I P V + GP +Y ++ K V Sbjct: 76 ----LHENGK--VIVTGCLGAKENQ-IREVHPKVLEISGPHSYEQV-----LHHVHKYVA 123 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + + F L + + G A+L I EGC+ C FC++P RG SR + V Sbjct: 124 KPQH---NPFTSL-VPEQGVKLTPKHFAYLKISEGCNHRCAFCIIPSLRGDLESRPIGAV 179 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 +DEA++L D+GV E+ ++ Q+ +A W G+ + K + L L+ + Sbjct: 180 LDEAKRLADSGVRELLVISQDTSAYGADIQHRTGFWNGQPV---KTSMLSLCEQLATLGI 236 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +RL Y +P + A G L +PYL +P+Q S RILK M R + I Sbjct: 237 WIRLHYVYPYPHVDDVIPLMAQGKL---LPYLDIPLQHASPRILKLMKRPGAVERTLERI 293 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R R + P + + S FIVGFPGET++DF+ +D + + + F+YSP G + + Sbjct: 294 KRWREICPQLTLRSTFIVGFPGETEEDFQMLLDFLREARLDRVGCFQYSPVEGAAANELP 353 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 +QV + +K +R + LQ+++ +++ VG + V+I++ +E G+ + +P Sbjct: 354 DQVPDEIKQARFDRFMQLQQQISAERLQEK---VGLTLPVIIDEVDEEGAIGRSMADAPE 410 Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + VV + + GDI+ V I + ++G L Sbjct: 411 IDGVVYLNGERGVKPGDIVSVTIENADEYDMWGTLA 446 >gi|254712376|ref|ZP_05174187.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti M644/93/1] gi|254715448|ref|ZP_05177259.1| MiaB-like tRNA modifying enzyme YliG [Brucella ceti M13/05/1] gi|261217182|ref|ZP_05931463.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261320053|ref|ZP_05959250.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|260922271|gb|EEX88839.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261292743|gb|EEX96239.1| conserved hypothetical protein [Brucella ceti M644/93/1] Length = 437 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 149/464 (32%), Positives = 223/464 (48%), Gaps = 47/464 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S G + DS R+ S+GYE D ADL+++NTC + A ++ Sbjct: 3 APRVSFV-SLGSPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLE 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N E G V+V GC+ AE + I R P V + GPQ Y E + Sbjct: 62 AIGLALN-------EYGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAY----ESVMN 107 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A V + D F L G R A+L I EGC C+FC++P RG Sbjct: 108 A-----VHEVAPPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDL 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251 +SR +++V+ EA KL+ GV EI ++ Q+ +A+ GLD + + F D Sbjct: 162 VSRPINEVLREAEKLVQAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDFS 218 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L E+ VR+ Y +P + A G + +PYL +P Q S +LK+M R Sbjct: 219 RELGEMGVWVRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPAVLKNMRRPAH 275 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + + I R PD+A+ S FIVG+PGET++DF+ +D +D+ +A FKY Sbjct: 276 QEKTSRRIQAWRETCPDLAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKYEAVK 335 Query: 372 GTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKL 428 G +++ LEQV E VK R K +QQ+S N VG+ + V+I++ GK Sbjct: 336 GAKANDLGLEQVPEEVKEARWHRFMAK--QQQISTNLLKKKVGKRLPVIIDEANGTIGKG 393 Query: 429 VGR--SPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 R +P + SV ++S+ +GDI+ V+I L+G V Sbjct: 394 RTRYDAPEIDGSVHISSRRPLRVGDIVTVKIEASDAYDLHGTAV 437 >gi|160940888|ref|ZP_02088228.1| hypothetical protein CLOBOL_05780 [Clostridium bolteae ATCC BAA-613] gi|158436132|gb|EDP13899.1| hypothetical protein CLOBOL_05780 [Clostridium bolteae ATCC BAA-613] Length = 453 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 127/420 (30%), Positives = 211/420 (50%), Gaps = 36/420 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ M+ +GYE V AD+ ++NTC + A K L R + L Sbjct: 10 GCKVNAYETEAMQQQLEERGYEIVPFDQKADVYIINTCSVTNIADRKSRQMLHRAKKLNP 69 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------RARFG 146 + +VV AGC Q + L+ V+++VG RL ++LE + G Sbjct: 70 -------EAVVVAAGCYVQV-ASDALKEDDSVDIIVGNNNKARLADILEEYMKDRQGDEG 121 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V+D + E +E L + G + + AF+ +Q+GC++FC++C++PY RG SR Sbjct: 122 GYVLDIARARE--YEELHVSRLGEHTR----AFIKVQDGCNQFCSYCIIPYARGRVRSRK 175 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRG--------KGLDGEKCTFSDLLYSLSEIK 258 V E + L+ G E+ L G +++++ KG D + DL+ + ++ Sbjct: 176 PEDVEAEVKGLVARGYREVVLTGIHLSSYGTEHMEGSPVKGGDWDSGPLWDLIERIHRVE 235 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R + PR ++ + L P+ HL +QSG D LK MNR +T +Y + Sbjct: 236 GLERIRLGSLEPRIITREFAEKLAGLPEFCPHFHLSLQSGCDATLKRMNRHYTTEDYLRR 295 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +R + AI++D I GFPGET+++F T ++ + + + FKYS R GT + M Sbjct: 296 CGILREIFDHPAITTDVIAGFPGETEEEFEETRRFLETVRFYEMHVFKYSKRQGTRAAVM 355 Query: 379 LEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSP 433 +QV E VKA R LL L+K + + + + G + VL E+ + GK ++G +P Sbjct: 356 EDQVSEQVKARRSDVLLELEKTMSRE---YRERFAGSRVSVLFEEAAEIGGKWYMMGHTP 412 >gi|256422109|ref|YP_003122762.1| MiaB-like tRNA modifying enzyme YliG [Chitinophaga pinensis DSM 2588] gi|256037017|gb|ACU60561.1| MiaB-like tRNA modifying enzyme YliG [Chitinophaga pinensis DSM 2588] Length = 435 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 131/448 (29%), Positives = 220/448 (49%), Gaps = 37/448 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVN--SMDDADLIVLNTCHIREKAAEK-VYSFLGRI 87 + GC N+ DS + + + V+ + D +++V+NTC +KA E+ + + L +I Sbjct: 15 TLGCSKNMVDSEVLSGQLLANEIDVVHESAKKDHNIVVVNTCGFIDKAKEESINTILEQI 74 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 R+++ V V GC+++ ++ P V+ G LP +L++ Sbjct: 75 ELKNRGRLEK-----VYVTGCLSERYRGDLESEIPGVDAWFGTM---ELPLILKK----- 121 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D DY E ERL Y A+L I EGC++ C+FC +P RG +SR + Sbjct: 122 --FDADYKAELIGERLLATPTHY-------AYLKIAEGCNRTCSFCAIPLMRGGHVSRPI 172 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYT 266 Q+V EA KL+++GV EI L+ Q + + GLD K +DLL +L+++KGL +R Sbjct: 173 EQLVAEAEKLVNSGVKEIMLIAQELTYY---GLDLYKERRLADLLRALAQVKGLEWIRLH 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P ++ + + Y+ +P+Q +D +LKSM R+ T E +I IR+ Sbjct: 230 YAYPHKFPMEVLDVMNEFPNICKYIDMPLQHAADNMLKSMKRQITRVEMEDLITAIRAKV 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P I + + I G+PGET +D T ++K+ + F YS GT + + + Sbjct: 290 PGICLRTTLITGYPGETLEDVEETKRFLEKMRLDRVGVFTYSHEEGTSAYELEDNIPAEE 349 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW-----LQSVVLN 441 K R + + +E + N VGQ+ V+++K KE G+ + R+ + V++N Sbjct: 350 KERRAQDIMETQQEISLEKNQEKVGQVFRVIVDK--KESGRYLARTEFDSVEVDNEVIIN 407 Query: 442 -SKNHNIGDIIKVRITDVKISTLYGELV 468 SK G+ + VRIT L GELV Sbjct: 408 TSKRLKPGEFVNVRITKAYDYDLEGELV 435 >gi|157803826|ref|YP_001492375.1| MiaB-like tRNA modifying enzyme [Rickettsia canadensis str. McKiel] gi|157785089|gb|ABV73590.1| MiaB-like tRNA modifying enzyme [Rickettsia canadensis str. McKiel] Length = 422 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 118/407 (28%), Positives = 199/407 (48%), Gaps = 51/407 (12%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N+Y+S + G + V +V NTC + KAAEK + R Sbjct: 9 VVTFGCRLNIYESEIIRKNLELSGLDNV--------MVFNTCTV-TKAAEK------QAR 53 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 K+ DL ++V GC AQ PQ Y +PE+ + ++ Sbjct: 54 QAIRGAKKDNPDLKIIVTGCSAQT----------------SPQIYANMPEVDKVIGNEEK 97 Query: 149 VVDTDYSVEDKFERLSIVD------------GGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 ++ Y + D E++++ D +N K AF+ +Q GCD FCTFC++P Sbjct: 98 LLPNYYQITD--EKIAVNDIMSVKETAGHLVSSFNGKS--RAFIQVQNGCDHFCTFCIIP 153 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LS 255 Y RG S + + ++ + L+ NG E+ G +V A+ G L G TF+ ++ L+ Sbjct: 154 YGRGKSRSVPIGAITEQVKHLMLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLN 211 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + L RLR ++ ++ D L + + +MP+ H+ +Q+G D ILK M RRH Sbjct: 212 LVPELRRLRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHKRTNV 271 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + ++R++RP+++ +D I GFP ET + F T L+ + F YS R GTP Sbjct: 272 IEFCWKLRAIRPEVSFGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPA 331 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 + M QV + ++ ER L+++ + Q F +GQ +E+L+E + Sbjct: 332 ARM-PQVPKPIRKERAEILRQEGQNQLTEFFKKHIGQKVELLVENNN 377 >gi|289549352|ref|YP_003474340.1| MiaB-like tRNA modifying enzyme [Thermocrinis albus DSM 14484] gi|289182969|gb|ADC90213.1| MiaB-like tRNA modifying enzyme [Thermocrinis albus DSM 14484] Length = 407 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 133/398 (33%), Positives = 206/398 (51%), Gaps = 23/398 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI- 87 V + GC+ N +D + F +GY DDAD+ V+NTC + ++A + RI Sbjct: 5 VVNLGCRSNFFDGQFILQKFIEKGY---ILGDDADIYVVNTCGVTKEAERSSRQAIRRIK 61 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 RN N+ +VVV GC AQ + E L V++VVG RL +L+E GK Sbjct: 62 RNNPNA--------VVVVTGCYAQIKPHE-LSTMEEVDLVVGNTHKTRLVDLVEEYLQGK 112 Query: 148 --RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 RV + + E +V Y R R F+ IQEGC+KFC+FCV+PY RG S Sbjct: 113 GQRVAVENIFRQSTLESFHLVTF-YERSR---PFVKIQEGCNKFCSFCVIPYARGKVRSV 168 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +V++E L G E+ + G ++ + G D T LL + +I+G+ +R Sbjct: 169 PPQKVLEEIHLLAQKGFEEVVITGTQLSQY---GWDM-GTTLGKLLKEMVKIEGIKLIRL 224 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ HP ++ + L+ + + + P+ HLP+QSGS RIL+ M R +T EYR++++++ Sbjct: 225 SSLHPAELEEELLTIITEEEKIAPHFHLPLQSGSLRILQLMERGYTPDEYRRLVEKLVEK 284 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RP AI +D IVGFP ET++DF T ++ + A F YS R T S M +V + Sbjct: 285 RPLSAIGTDVIVGFPTETEEDFEETYRFLESLPIAYMHIFPYSDRPFTKASRMEGKVPSS 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 VK R+ L++ ++ SF C G+ + + GK Sbjct: 345 VKDRRVEILKELDTRKRESFRKRCEGKKLRATVLGEGK 382 >gi|257440231|ref|ZP_05615986.1| RNA modification enzyme, MiaB family [Faecalibacterium prausnitzii A2-165] gi|257197265|gb|EEU95549.1| RNA modification enzyme, MiaB family [Faecalibacterium prausnitzii A2-165] Length = 441 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 133/448 (29%), Positives = 217/448 (48%), Gaps = 30/448 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D M + S G+E V + +AD+I++NTC E A + + Sbjct: 7 SLGCPKNQVDLDVMVHILLSAGHETVADLGEADVILVNTCGFIESAKTEAIENILEACAY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K ++ +L V+V GC+A+ +I P V+ VVG + + ++ R G+ + Sbjct: 67 K----QQNPELKVIVTGCLAERYRSQIEEEIPEVDAVVGCASNKAIDTIVARLFHGENHL 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 ++ Y + F G R G A +L I EGC+ C +C +P RG SR L Sbjct: 123 ES-YGAKKDFPL------GGKRVIGTPAHYAYLKIAEGCNNRCHYCAIPGIRGPLHSRDL 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 + V EAR L GV E+ ++ Q+ A+ G D G+ + +LL L+++ GL +R Sbjct: 176 ADCVAEARWLAGEGVKELIVVAQDPTAY---GEDWGKPGSICELLDKLNKVPGLEWIRIM 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P ++D I A + ++PYL LP+Q +D ILK+MNRR T E ++I ++R Sbjct: 233 YAYPERITDDFIAAMKRNEKVVPYLDLPIQHCNDTILKNMNRRSTRAELLEVIGKLRREI 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P I + + I GFPGET++ F + V ++ + + F YS T + M Q+D+ Sbjct: 293 PGITLRTTLIAGFPGETEEQFEDLCNFVKEVRFDRLGCFAYSAEENTVAAKMDGQIDQET 352 Query: 387 K---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVV 439 K AE ++ +Q + Q+ + VGQ + VL + +E G + G +P + V Sbjct: 353 KDRRAELVMQIQTGIMAQKQAEK---VGQTVRVLCDGIDEESGLYLCRTTGDAPEVDGNV 409 Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYG 465 S + G V + D + LYG Sbjct: 410 CVSSEEPLYPGQFYDVLVEDSDLYDLYG 437 >gi|254463879|ref|ZP_05077290.1| MiaB-like tRNA modifying enzyme [Rhodobacterales bacterium Y4I] gi|206684787|gb|EDZ45269.1| MiaB-like tRNA modifying enzyme [Rhodobacterales bacterium Y4I] Length = 420 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 130/442 (29%), Positives = 205/442 (46%), Gaps = 40/442 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ G E + +V+NTC + +A K + R+R Sbjct: 8 TLGCRLNAYETEAMKELSQQAGLE--------NAVVVNTCAVTAEAVRKARQEIRRLR-- 57 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL---PELLER 142 +E D ++V GC AQ E E + V+ + +T+ ++ P+ + Sbjct: 58 -----RENPDAPIIVTGCAAQTEPETFAAMEEVTRVIGNTEKMQAETWQQIAKGPDFIGT 112 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K VD SV + L +DG R R A++ +Q GCD CTFC++PY RG Sbjct: 113 TE--KVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNS 165 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLV 261 S V+D+ ++L+D G E+ L G ++ +W G L K DL+ L + L Sbjct: 166 RSVPAGVVIDQIKRLVDRGYNEVVLTGVDLTSW-GADLPA-KPRLGDLVMRILKLVPDLP 223 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ + + L++A LMP+LHL +Q G D ILK M RRH + + Sbjct: 224 RLRISSIDSIEADENLMQAIATEPRLMPHLHLSLQHGDDLILKRMARRHLRDDAIAFCEE 283 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R +RP++ +D I GFP ET+ F ++ LV G F YS R GTP + + Q Sbjct: 284 ARRLRPEMTFGADIIAGFPTETNAHFENSLKLVTDCGLTWLHVFPYSKREGTPAARIPNQ 343 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V+ NV ER L+ Q A +G+ +L+E +GR+ V Sbjct: 344 VNGNVIKERAARLRAAGDAQVERHLAAQIGKTHRILMEN------PHMGRTEQFTEVAFA 397 Query: 442 SKNHNIGDIIKVRITDVKISTL 463 + G I+ IT + S L Sbjct: 398 APQEE-GRIVTAEITGIDGSQL 418 >gi|62185140|ref|YP_219925.1| hypothetical protein CAB512 [Chlamydophila abortus S26/3] gi|81312696|sp|Q5L5W7|RIMO_CHLAB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|62148207|emb|CAH63964.1| conserved hypothetical protein [Chlamydophila abortus S26/3] Length = 460 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 118/393 (30%), Positives = 195/393 (49%), Gaps = 17/393 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + GYE + +AD ++LNTC + A ++ +L RI N Sbjct: 22 SLGCSRNLVDSEVMLGILLKAGYEATELLREADYLILNTCGFLKAARDESTDYLQRIINE 81 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K K +++ GC+ EE+ P V+ V+G + +E G+++ Sbjct: 82 KKETAK------IILTGCMVSKHKEELKPWLPYVHYVLGSGDVEHILSAIESKESGEKLS 135 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y + R Y A+L I EGC K C FC++P +G S+ L QV Sbjct: 136 SKSYLEMGEVPRKLSTPKHY-------AYLKIAEGCRKRCAFCIIPTIKGGLRSKPLEQV 188 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGL--DGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 + E R L+ GV EI L+ Q++ + GK L D + C +S L L E G +R Sbjct: 189 MKEFRLLLKMGVKEIILIAQDLGDY-GKDLSKDRKSCLYSVLREMLKE-PGNYWIRMLYL 246 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ D LI L+PY+ +P+Q ++R+LK M R + + ++ ++R+ P Sbjct: 247 YPDEVDDTLIDLMEKDQRLLPYVDIPLQHINNRVLKKMLRTTSREQILDLLTKLRTRIPH 306 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I I S IVGFPGET+++F+ ++ V + F YS G+ + M +Q+ ++VK+ Sbjct: 307 IYIRSSLIVGFPGETEEEFQELVNFVGEGWIDNLGIFSYSQEKGSLAAEMPDQIPQSVKS 366 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 +RL L + ++ N VG+I+E +I+ + Sbjct: 367 KRLKILSQTQKKNVEKHNKQFVGKIVEAVIDGY 399 >gi|316968295|gb|EFV52591.1| putative radical SAM domain protein [Trichinella spiralis] Length = 542 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 134/458 (29%), Positives = 230/458 (50%), Gaps = 31/458 (6%) Query: 22 IVPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 +P F +VK++GC N DS M + S GY V+ AD+ +LN+C ++ + + Sbjct: 47 FIPGAFSVYVKTWGCTHNSSDSEYMAGLMSSAGYGIVDDPSVADIWLLNSCTVKTPSEQH 106 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV--VGPQTYYRLP 137 V + L + R L V+V+GCV QAE P + V VG Q R+ Sbjct: 107 VQNELEKARALNKP---------VIVSGCVPQAEPS-----IPWLQGVSLVGIQQIDRIV 152 Query: 138 ELLERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 E++E G V +Y V+ K + +D R+ + + I GC CT+C Sbjct: 153 EVVEETLKGNTVQLLNYKKVKGKRTAGARLDLPKVRRNPLVEIIAINTGCLNNCTYCKTK 212 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS- 255 RG S S+ +++D A I GV EI L +++ A+ G+ +D CT +LL +L+ Sbjct: 213 KARGNLASYSIEEIIDRAESCISEGVKEIWLTSEDLGAY-GRDID---CTLPELLKALTA 268 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDL---DVLMPYLHLPVQSGSDRILKSMNRRHTA 312 ++ V LR ++P ++ G++ + +LH+PVQSGSD +L+ M R + Sbjct: 269 KLPDGVMLRLGMTNPPFHIPISVQEIGEILNHPCVYSFLHIPVQSGSDAVLRDMRREYNV 328 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 ++ +++ +R P I I++D I GFP ET+ DF+ T+DLV+K +A F ++ PR G Sbjct: 329 DDFCAVVEFMRKKVPGITIATDVICGFPTETEQDFKDTLDLVEKYRFASLFINQFYPRPG 388 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGR 431 TP + L+++D V +R + + + N VG +VLI E+ + LVG Sbjct: 389 TPAAK-LKRLDTAVVKDRTRRMTQLFNSYEPYRNR--VGLKYQVLITERSFRGDDYLVGH 445 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + + + +++ ++ + +G + V+I ++ GEL Sbjct: 446 NKFYEQILVANQPNLLGKKVWVKIVSCSKHSMVGELTA 483 >gi|282857132|ref|ZP_06266378.1| conserved hypothetical protein [Pyramidobacter piscolens W5455] gi|282585067|gb|EFB90389.1| conserved hypothetical protein [Pyramidobacter piscolens W5455] Length = 436 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 122/417 (29%), Positives = 207/417 (49%), Gaps = 38/417 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R +++ GC+ N+ ++ + F +G V+ D V+ TC + A K + Sbjct: 12 RRVAIQALGCRTNLAEAEALASAFQRRGALIVDE-PPYDAAVIVTCSVTAVADRKSRQLI 70 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R R + G ++ V V GC AQ GE+ + V++++G + LP+ + R Sbjct: 71 NRCR-------RAGENVCVAVCGCWAQGVGEKKAA-AMGVDLLIGNRFKGELPDRVAR-- 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV----------TAFLTIQEGCDKFCTFCV 194 +ED+ V G R+ AF+ +Q+GCD CT+C+ Sbjct: 121 ----------WLEDRARSFEAVRGDMGRRWDSLELDRSPYFGRAFVKVQDGCDHRCTYCI 170 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 VP RG +SR ++ ++ EAR+ G E+ L G ++ + G D + +F+ L+ +L Sbjct: 171 VPVLRGPSVSRPVADILAEARRCAAAGQFELILTGVHLGLF---GRDSGE-SFAALVRAL 226 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 ++G+ RLR+ + P + D L++A +LHLPVQSG D IL+ M R HTA + Sbjct: 227 DSVEGIQRLRFGSLEPFSIGDDLLEALAQSPRFCRHLHLPVQSGDDEILRRMGRGHTAAD 286 Query: 315 YRQIIDRIR-SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 Y ++++R+R ++ D+ IS+D + FPGE++ F T+ L+ + F YSPR GT Sbjct: 287 YLKLVERLRAALGSDLHISTDVMCAFPGESETAFENTLALLKAARVGRVHGFHYSPRPGT 346 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 P + M Q+ + R L+K RE + +G+ +EVL E G +G+ G Sbjct: 347 PAAAMSGQIPTEIALARAERLKKAGRECLAAEARRWIGREVEVLFE--GAHRGRAQG 401 >gi|30248915|ref|NP_840985.1| hypothetical protein NE0911 [Nitrosomonas europaea ATCC 19718] gi|75540795|sp|Q82VY8|RIMO_NITEU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|30138532|emb|CAD84822.1| Uncharacterized protein family UPF0004 [Nitrosomonas europaea ATCC 19718] Length = 447 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 220/462 (47%), Gaps = 48/462 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC DS R+ ++GY S DADL+V+NTC + A + Sbjct: 14 IPRVGFV-SLGCPKATVDSERILTCLRAEGYLISPSYADADLVVVNTCGFIDSAVAESLE 72 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLE 141 +G + E G V+V GC+ E +++R++ P V V GPQ + + + Sbjct: 73 TIGEA-------LTENGK--VIVTGCLGAKE--DVIRQAHPSVLAVTGPQATEEVMQAIH 121 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R K D + L + G A+L I EGC+ CTFC++P RG Sbjct: 122 R-HLPKP--------HDPYLDL-VPPQGIKLTPKHYAYLKISEGCNHRCTFCIIPSMRGD 171 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +SR + V+ EA+ L+D GV E+ ++ Q+ +A W+G+ + + ++L Sbjct: 172 LVSRPVGNVLQEAQNLVDAGVRELLIISQDTSAYGVDIKYRTGFWQGRPI---RSRITEL 228 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L E+ +RL Y +P + A G L +PYL +P Q GS RILK M R Sbjct: 229 ARALGELGIWIRLHYVYPYPHVDELIPLMAEGKL---LPYLDIPFQHGSKRILKLMKRPA 285 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + I + R + PDIA+ S FIVGFPGET+ +F + +++ + +F YSP Sbjct: 286 NSENVLARIRQWRDICPDIALRSTFIVGFPGETEQEFEELLAFLEEAQLDRVGAFAYSPV 345 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 G + + + V ++ ERL L + E G+I++VL++ ++ ++ Sbjct: 346 KGAAANALPDPVPSEIQQERLARLMQWQEEISKKRLAGKKGRILKVLVDT--VDENGVIA 403 Query: 431 RS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 RS P + VV + +I GD + VRIT I L+ + Sbjct: 404 RSYADAPEIDGVVYIEPDFSIKPGDWVDVRITRTGIHDLWAK 445 >gi|304312821|ref|YP_003812419.1| hypothetical protein HDN1F_32010 [gamma proteobacterium HdN1] gi|301798554|emb|CBL46784.1| Conserved hypothetical protein [gamma proteobacterium HdN1] Length = 448 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 130/422 (30%), Positives = 206/422 (48%), Gaps = 43/422 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ S GC + DS R+ GYE V + ++AD++V+NTC + A ++ + Sbjct: 13 QKVGFISLGCPKALVDSERILTQLRIDGYEIVPTYENADIVVVNTCGFIDAAKQESLDAI 72 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G +N R V+V GC+ A+ +I P V V GPQ Y + + + Sbjct: 73 GEALT-ENGR--------VIVTGCMG-ADAAKIREVHPKVLAVTGPQAYEEVVSAVHQ-- 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V T + F L I G A+L I EGC+ CTFC++P RG +S Sbjct: 121 ----YVPTQLG-HNPFIDL-IPPTGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYS 253 R + V+ EA++L+D G E+ ++ Q+ +A W G+ + K +DL + Sbjct: 175 RPIGDVMGEAKRLVDAGTQELLIISQDTSAYGVDLKYRTGFWDGRPV---KTKLTDLCEA 231 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 L E+ VRL Y +P + A G ++PYL +P Q GS RIL+ M R Sbjct: 232 LGELGVWVRLHYVYPYPHVDHIIPMMAEGK---ILPYLDIPFQHGSPRILQLMKRPGDID 288 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I + R++ PD+ + S FIVGFPGET+ DF+ +D +++ + +F YSP G Sbjct: 289 NTLSRIHQWRNICPDLTLRSTFIVGFPGETEGDFQQLLDFIEEAQLDRVGAFAYSPVEGA 348 Query: 374 PGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 + + + V E +K ERL + +Q ++ ++ +G+ IEVLI++ +E VG Sbjct: 349 TANALPDPVPEELKQERLARFMEVQARISADKLQKK---IGKRIEVLIDEVDEEGA--VG 403 Query: 431 RS 432 RS Sbjct: 404 RS 405 >gi|309389274|gb|ADO77154.1| SSU ribosomal protein S12P methylthiotransferase [Halanaerobium praevalens DSM 2228] Length = 445 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 120/450 (26%), Positives = 228/450 (50%), Gaps = 21/450 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSF 83 ++ + + GC N DS M +G++ + +A++I++NTC I++ E + + Sbjct: 3 KYSLMTLGCPKNEVDSQHMNGFLRGDKGFKYTSEFKEAEVIIINTCGFIQDAKEESIETI 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L + K K V+V GC+ Q EE+ + P ++ ++G + ++ ++++ Sbjct: 63 LTALEYKKEYNCKS-----VIVTGCLTQRYSEELKKDIPEIDAILGTSNFDQIVDVIKET 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G ++T + F+ S + + V A+L I EGC+ CT+C +P RG Sbjct: 118 LAG---IETGGITKAGFDYSSSLPRELDN--NVYAYLKIAEGCNNNCTYCSIPQIRGPIK 172 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 SRS++ +V EA+++ ++G+ E+ ++ Q+ + G+D E+ + LL L+EI+ L Sbjct: 173 SRSIADIVAEAKEIAESGIKELIIIAQDTTQY---GVDIYERSALAPLLKKLAEIEELKW 229 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R S+P ++D +I + + + Y LP+Q S +I K MNR+ + II++I Sbjct: 230 IRVLYSYPEFITDEIIDVFAEEEKICNYFDLPIQHSSKKIRKLMNRKGNQEDIANIINKI 289 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ PD + + I GFPGET+ DF + K + + +F++S GT + +V Sbjct: 290 RNKIPDAKLRTSLITGFPGETESDFENLKKFIKKYKFDRLGAFEFSREEGTAAYKLDNRV 349 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--SPWLQS--- 437 VKAER + + +E ++ N +G+ +EV+IE + +E R SP + + Sbjct: 350 PAAVKAERKEEIMQLQQEISLAKNKELIGRKLEVIIEDYDQENYLARSRYDSPEIDNQIY 409 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 + + + IG+I + I + L GE+ Sbjct: 410 IPIKKQKLEIGEIYQAEIKEAFHYDLIGEI 439 >gi|24375559|ref|NP_719602.1| MiaB-like putative RNA modifying enzyme YliG [Shewanella oneidensis MR-1] gi|81459191|sp|Q8EA37|RIMO_SHEON RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|24350441|gb|AAN57046.1|AE015838_8 MiaB-like putative RNA modifying enzyme YliG [Shewanella oneidensis MR-1] Length = 481 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 139/454 (30%), Positives = 219/454 (48%), Gaps = 42/454 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ GYE NS D+ADL+++NTC + A E+ L +R Sbjct: 44 SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEES---LDAVREA 100 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E +I P V + GP +Y + K V Sbjct: 101 ----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV-----LKHVHKYVP 148 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 ++ + F L I G A+L I EGCD CTFC++P RG SR V Sbjct: 149 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPALRGDLDSRGAGSV 204 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSEIKGLV 261 +DEA++L++ GV EI ++ Q+ +A+ GK G K + L L ++ V Sbjct: 205 LDEAKRLVEAGVQEILVVSQDTSAY-GKDKGGRTDFWNGMPVKQDITSLARQLGKMGAWV 263 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RL Y +P + A G +++PYL +P+Q S RILK M R + I R Sbjct: 264 RLHYIYPYPWVDDLIPLMAEG---LILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQR 320 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R + PD+ I S FIVGFPGET++DF +D + + + FKYS G + + E Sbjct: 321 WREICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARLDRVGCFKYSEVEGAVANTIAEL 380 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ 436 + E VK + R + +Q ++ ++++ VG+ +++LI+ +E G+ +P + Sbjct: 381 ISEEVKEDRYHRFMEVQAEISAERLA---RFVGRTMDILIDDVDEEGAIGRSFADAPEID 437 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +V + + G +++ IT L+ ELV Sbjct: 438 GMVFINGETELEPGMLVRAVITHSDEHDLWAELV 471 >gi|148653600|ref|YP_001280693.1| ribosomal protein S12 methylthiotransferase [Psychrobacter sp. PRwf-1] gi|238066576|sp|A5WGF2|RIMO_PSYWF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|148572684|gb|ABQ94743.1| MiaB-like tRNA modifying enzyme YliG [Psychrobacter sp. PRwf-1] Length = 524 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 125/428 (29%), Positives = 205/428 (47%), Gaps = 34/428 (7%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 + + P+ FV S GC + DS R+ GY + + ADL+V+NTC E A ++ Sbjct: 63 ETVAPKVGFV-SLGCPKALVDSERIITELTRDGYRVASDYNGADLVVVNTCGFIESAVQE 121 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 +G N KN + V+V GC+ + + ++I P V V G Y + Sbjct: 122 SLDAIGEALN-KNGK--------VIVTGCLGK-DAQKIRDMHPAVLAVTGAHAYDEVITA 171 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + + + + K + + + G A+L I EGC+ CTFC++P R Sbjct: 172 VSTHAPMPQAIQDKKAYDPKIDLIDL--AGVKLTPSHYAYLKISEGCNHRCTFCIIPSLR 229 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR + QV+ EA L GV EI ++ Q+ +A W G L K F Sbjct: 230 GDLLSRPIEQVMGEAMALKKAGVKEILVISQDTSAYGVDLKYKTSFWDGMPL---KSKFF 286 Query: 249 DLLYSLSEIKGLVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 D+ +L+++ VRL Y +P D L+ GD L+PYL +P+Q S +LK+M Sbjct: 287 DMCQALAKVGIWVRLHYVYPYPHVDKVVELMAKPGDRGGLLPYLDIPLQHASPSVLKAMK 346 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + I + R + PDI I S F+VGFPGET++DF ++ + + + F Y Sbjct: 347 RPAHSENTLARIQKWREINPDIVIRSTFVVGFPGETEEDFEYLLEWLKQAKLDRVGCFTY 406 Query: 368 SPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 S G +++ V E +K ER + +Q+++ EQ++ VG+ + VL+++ E Sbjct: 407 SEIEGAVANDLPNPVPEAIKQERYERFMAVQQQISEQKLQEK---VGKTMTVLVDEIDTE 463 Query: 425 KGKLVGRS 432 + + RS Sbjct: 464 EQIAICRS 471 >gi|332879760|ref|ZP_08447450.1| ribosomal protein S12 methylthiotransferase RimO [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682279|gb|EGJ55186.1| ribosomal protein S12 methylthiotransferase RimO [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 434 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 136/451 (30%), Positives = 218/451 (48%), Gaps = 39/451 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87 V + GC NVYDS + + G V+ + +++V+NTC I E + + L + Sbjct: 13 VVTLGCSKNVYDSEVLMGQLKAGGKNVVHEQE-GNIVVINTCGFINNAKEESINTILDYV 71 Query: 88 RNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + KE G + V V GC+++ ++ + P V+ G LP LL Sbjct: 72 QQ------KEAGLIDKVFVMGCLSERYKPDLEKEIPDVDQYFGTS---ELPALL------ 116 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +V+ DY E ERL+ Y A+L I EGCD+ C+FC +P RG IS Sbjct: 117 -KVLGADYKHELIGERLTTTPKNY-------AYLKISEGCDRPCSFCAIPLMRGAHISTP 168 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265 + +V EA KL GV E+ L+ Q++ + GLD +K +DLL +L +++G+ +R Sbjct: 169 IEALVTEAEKLAAKGVKELILIAQDITYY---GLDLYKKRALADLLRALVKVEGIEWIRI 225 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 + P +I+ + + YL +P+Q SD IL SM R T + +++ + R Sbjct: 226 HYAFPTGFPMDVIEVMKEEPKICNYLDIPLQHISDPILASMKRGTTQEKTTKLLKKFREA 285 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P++AI + IVG+PGET DF A V ++ + + F YS T ++ + V E Sbjct: 286 MPEMAIRTTLIVGYPGETQADFEALKFFVKEMRFDRLGCFTYSHEENTTAYDLEDDVPEE 345 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW-----LQSVVL 440 VK R + + + N VG+ LI++ KE VGR+ + V++ Sbjct: 346 VKLARANEIMEIQSQISWELNQQKVGKTFRCLIDR--KEGNYFVGRTEYDSPDVDNEVLI 403 Query: 441 NSKNHNI--GDIIKVRITDVKISTLYGELVV 469 ++K H + GD ++V+I D LYGE VV Sbjct: 404 DAKKHYVKTGDFVEVKIIDATDYDLYGEPVV 434 >gi|260494169|ref|ZP_05814300.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_33] gi|260198315|gb|EEW95831.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Fusobacterium sp. 3_1_33] Length = 435 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 124/449 (27%), Positives = 228/449 (50%), Gaps = 40/449 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ +++ +GYE V +D+ ++N+C + A K + L R + + Sbjct: 11 TLGCKVNQYETESIKNQLIKRGYEEVPFEGKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138 + V+V GC AQ EIL +S IVN V + Sbjct: 71 -------NPNAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVEAIEDIS---- 119 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ER + G + +Y E +F L + A++ IQ+GC+ FC++C +P+ Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG SR ++ E KL+++G E+ L+G +++A+ G+ + EK +F LL + +I+ Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GEDFE-EKDSFESLLEDILKIR 226 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L R+R + +P ++D I+ + + LMP+LH+ +QS D +LK+M R + + R Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSLLIRDN 285 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + +++S ++ ++D IVGFP E + F+ T D++ +I ++ F+YS R GT SNM Sbjct: 286 LLKLKSKIKNMEFTADVIVGFPKEDETMFQNTYDVIREIKFSGLHIFQYSDREGTIASNM 345 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQS 437 +VD K +R L +E + + + +EVL+E+ + G+ G S +L+ Sbjct: 346 DGKVDAKTKKQRADRLDSLKQEMLIESRKKYLEKNLEVLVEEE--KDGEYFGYSQNYLRV 403 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466 + + I +I ++I ++ + L GE Sbjct: 404 KFKSDEKELINKLINIKIKCIENNVLIGE 432 >gi|90424119|ref|YP_532489.1| hypothetical protein RPC_2620 [Rhodopseudomonas palustris BisB18] gi|123275201|sp|Q214L6|RIMO_RHOPB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|90106133|gb|ABD88170.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 441 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 133/469 (28%), Positives = 218/469 (46%), Gaps = 48/469 (10%) Query: 18 VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 ++Q P+ FV S GC + DS R+ ++GYE D ADL+++NTC + A Sbjct: 1 MNQAAAPKVSFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADLVIVNTCGFLDSAK 59 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 ++ +G V+V GC+ AE E+I P + + GPQ Y + Sbjct: 60 KESLGAIGEAMAANGK---------VIVTGCMG-AEPEQIEAAYPNLLSITGPQQYESVL 109 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 + + RA D + G A+L I EGC+ C+FC++P Sbjct: 110 DAVHRALPPLHNPHLDL----------VPAQGIKLTPRHYAYLKISEGCNNRCSFCIIPK 159 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246 RG +SR +V+ EA KL+ GV E+ ++ Q+ +A W+ + + + Sbjct: 160 LRGDLVSRPAGEVLREAEKLVKAGVKELLVVSQDTSAYGVDLKYAESPWQDRNV---RAR 216 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F DL L E+ VRL+Y +P + A G + +PYL +P Q S +LK M Sbjct: 217 FYDLAKELGELGAWVRLQYVYPYPHVDEVIGLMAQGKV---LPYLDIPFQHASPEVLKQM 273 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + I + R + P++ + S FIVGFPGETD DF +D +++ + +FK Sbjct: 274 KRPAAQDKTLARIKQWREICPELTLRSTFIVGFPGETDSDFAYLLDWLEQAEIDRVGAFK 333 Query: 367 YSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 Y G + + +QV + VK ER L+ Q+K+ +++ VG +V+I++ G Sbjct: 334 YEAVRGATSNALPDQVSDEVKTERWNALMARQQKISARRLKRK---VGTRQQVIIDEVGP 390 Query: 424 --EKGKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 KG+ +P + SV L S+ +G+I+ +I L+G + Sbjct: 391 TVSKGRSKADAPQIDGSVYLTSRRPLRVGEIVTAKIERADAYDLHGSVA 439 >gi|328675517|gb|AEB28192.1| Ribosomal protein S12p Asp88 methylthiotransferase [Francisella cf. novicida 3523] Length = 439 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 131/457 (28%), Positives = 217/457 (47%), Gaps = 52/457 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC N+ DS R+ ++GY+ V+S D+AD++++NTC A ++ Sbjct: 4 IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G I E G +LV GC+ + + I + P V + GPQ Y L +E Sbjct: 63 VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + D+ + + + Y ++L I EGC+ CTFC++P RG Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 SRS+ ++ EA KL + GV E+ ++ Q+ +A W K + DL Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKPGVWNNKEY---QSNIIDLA 219 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L ++ RL Y +P + A G + +PYL +P+Q S +LK M R Sbjct: 220 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVPLQHSSPEVLKRMKRPAH 276 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I++ R + PDI I S FIVGFPGET++DF +D +K + FKYS Sbjct: 277 TQKTLDRINKWRDICPDITIRSTFIVGFPGETEEDFEHLLDFAEKAQLDRVGCFKYSEVE 336 Query: 372 GTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 G + + E VK +RL + LQ ++ ++ VG +++I+ KE+ Sbjct: 337 GAKANQFDNLISEEVKQQRLDEFMGLQAQISADKLQ---RFVGTEQQIIIDVINKEENYA 393 Query: 429 VGRSPWL------QSVVLNS--KNHNIGDIIKVRITD 457 +GR+ + Q ++ ++ +N +G+ KV IT+ Sbjct: 394 IGRTKYDAPEVDGQVIIGDALERNLKVGEFAKVEITE 430 >gi|291459579|ref|ZP_06598969.1| RNA modification enzyme, MiaB-family [Oribacterium sp. oral taxon 078 str. F0262] gi|291417857|gb|EFE91576.1| RNA modification enzyme, MiaB-family [Oribacterium sp. oral taxon 078 str. F0262] Length = 426 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 141/458 (30%), Positives = 220/458 (48%), Gaps = 54/458 (11%) Query: 26 RFFVKSYGCQMNVYDS--LRMEDMFFSQGYERVNSMDDADLIVLNTCH-IREKAAEKVYS 82 + ++ S GC N DS L + G + ++A+L ++NTC I E + + Sbjct: 2 KLYMVSLGCDKNRVDSEKLLSSLLLKHPGSSVTDDPEEAELAIVNTCSFIGPAKEESIQT 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY-RLPELLE 141 L K +R+++ ++VAGC+A+ EEI + P V+ V+G Y RL +E Sbjct: 62 ILALGEYKKTARLQK-----LLVAGCLAERYREEIRKELPEVDEVIGVSDYVSRLDLQME 116 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R G++ D +L I EGCDK+C++C++P RG Sbjct: 117 RVASGEQYSD---------------------------YLKIAEGCDKYCSYCIIPKLRGH 149 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S + ++ EA +L GV E+ L+ Q + G L G+K +L+ LS ++G+ Sbjct: 150 YRSIPMEHLLREAEQLSLRGVKELNLVAQETTLY-GTDLYGKKA-LPELIQRLSAVEGIE 207 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R +P ++ LI+ D L YL LP+Q SDRIL M RR A E R+ I Sbjct: 208 WIRLLYCYPEEIELPLIREIRDNAKLCHYLDLPIQHASDRILGRMRRRTRASELREKIAL 267 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R PDI + + I GFPGE+++DFR +D ++ + + F YS GT + M Q Sbjct: 268 LRREIPDITLRTTLITGFPGESEEDFRELLDFTRELRFDRLGVFPYSREEGTAAAEMEGQ 327 Query: 382 VDENVKAERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----P 433 + E +K ER KKL E Q ++F A +G+ + VLI + + RS P Sbjct: 328 LPEKLKRERW----KKLMELQQGIAFEKAKEQIGRRLRVLITAYDPGAKHYIARSYMDAP 383 Query: 434 WLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGEL 467 + S V + +N GD+ +VRIT + L GEL Sbjct: 384 EIDSFVYVNAGSRRNLLAGDMRQVRITGSRGYDLIGEL 421 >gi|304411575|ref|ZP_07393188.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS183] gi|307306649|ref|ZP_07586391.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica BA175] gi|304350102|gb|EFM14507.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica OS183] gi|306910617|gb|EFN41046.1| MiaB-like tRNA modifying enzyme YliG [Shewanella baltica BA175] Length = 472 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 138/454 (30%), Positives = 222/454 (48%), Gaps = 42/454 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ GYE NS +ADL+++NTC + A E+ L +R Sbjct: 39 SLGCPKNLVDSERILTQLRIDGYEVTNSYANADLVIVNTCGFIDAAVEES---LDAVREA 95 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E +I P V + GP +Y + K V Sbjct: 96 ----LEENGK--VIVTGCLGAKEN-QIREVHPDVLEITGPHSYEAV-----LKHVHKYVP 143 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 ++ + F L I G A+L I EGCD CTFC++P RG SR + Sbjct: 144 KPEH---NPFTSL-IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPSLRGDLDSRPAGSI 199 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---------KCTFSDLLYSLSEIKGLV 261 +DEA++L+++GV EI ++ Q+ +A+ GK G K + L L ++ V Sbjct: 200 LDEAKRLVESGVQEILVVSQDTSAY-GKDKGGRTDFWNGMPVKQDITSLARQLGKMGAWV 258 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RL Y +P D LI + +++PYL +P+Q S RILK M R + I R Sbjct: 259 RLHYIYPYP--WVDDLIPLMAE-GLILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQR 315 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R + PD+ I S FIVGFPGET++DF+ +D + + + FKYS G + + E Sbjct: 316 WREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCFKYSEVDGAVANTIAEL 375 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ 436 + E VK + R + +Q ++ ++++ VG+ +++LI+ +E G+ +P + Sbjct: 376 ISEEVKEDRYHRFMEVQAEISAERLA---RFVGRTLDILIDDVDEEGAIGRSFADAPEID 432 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +V + + G +++ RIT L+ E+V Sbjct: 433 GMVFINGETELEPGMLVRARITHSDEHDLWAEVV 466 >gi|153874656|ref|ZP_02002792.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152068880|gb|EDN67208.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 443 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 140/467 (29%), Positives = 222/467 (47%), Gaps = 52/467 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ F+ S GC DS R+ ++GY + +DA L+V+NTC + A E+ Sbjct: 7 LPKIGFI-SLGCPKATVDSERILTQLRAEGYLITSRYEDAHLVVVNTCGFIDDAVEESLE 65 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + E G V+V GC+ A GE I R P V V GP L E++ Sbjct: 66 VIGE-------ALAENGK--VIVTGCLG-ARGEMIKNRFPNVLAVTGPNA---LDEVI-- 110 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + T+ + D + L + GG A+L I EGC++ C+FC++P RG Sbjct: 111 -----TAIHTELPPQHDPYLDL-VPPGGIKLTPRHYAYLKIAEGCNQKCSFCIIPTMRGR 164 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +S+ + ++DEA LI+ GV E+ ++ Q+ A W+G L K ++L Sbjct: 165 LVSQPIGALLDEAEHLIEAGVRELLIVSQDTAAYGVDTKYRLDFWQGTPL---KTRITEL 221 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L + VRL Y +P D L++ + D+++PYL +P+Q + ILK+M R Sbjct: 222 ARHLGNLSAWVRLHYVYPYPH--IDQLVELMAE-DLVLPYLDVPLQHANPTILKAMRRPA 278 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + I R + PDI + S FIVGFPGETD F + + + + +F YSP Sbjct: 279 DNEMMLRRIAHWREICPDITLRSTFIVGFPGETDAAFEDLLAFIREARLDRVGAFAYSPV 338 Query: 371 LGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--K 425 G +++ + V E +K ERL + +Q + +++ A VGQ VLI++ E Sbjct: 339 EGATANSLPDAVPEEIKQERLARFMTMQSTISAEKLQ---ARVGQTNIVLIDEVMPEVIY 395 Query: 426 GKLVGRSPWLQSVVLNSKNHNI----GDIIKVRITDVKISTLYGELV 468 + V +P + V+ + GD I+V IT LY E+V Sbjct: 396 ARSVAEAPEIDGTVIIKTEEELDLDPGDFIEVTITGADEHDLYAEVV 442 >gi|297570482|ref|YP_003691826.1| MiaB-like tRNA modifying enzyme YliG [Desulfurivibrio alkaliphilus AHT2] gi|296926397|gb|ADH87207.1| MiaB-like tRNA modifying enzyme YliG [Desulfurivibrio alkaliphilus AHT2] Length = 463 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 132/468 (28%), Positives = 217/468 (46%), Gaps = 38/468 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRI 87 + S GC N+ DS M +G V+ +AD++++NTC + A E+ + + LG I Sbjct: 6 LTSLGCPKNLVDSELMLGQLVEEGLRPVSEPGEADVLLVNTCGFIQSAVEEGIDTILGLI 65 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 K+ ++ VVV GC+ Q G ++ P V++ +G + + L G+ Sbjct: 66 EQKKSPAVR------VVVCGCLVQRYGSGLVEELPEVDLFLGTEEVSSIAARLRALEEGR 119 Query: 148 RVVDTD-------------YSVEDKFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCT 191 ++ Y D +R + + R+ A +L I EGC C+ Sbjct: 120 AAPESGSVPAGAPAADSLRYRPVDDLQRF-LPNATLPRRLTTPAHRAYLKITEGCGNRCS 178 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 +C++P RG SR + ++ EAR L GV E+TL+ Q++ A+ G L DLL Sbjct: 179 YCMIPAIRGPLRSRRPADILHEARALAAAGVKELTLVAQDLTAY-GLDLGPGGPRLPDLL 237 Query: 252 YSLS-EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 L E+ +RL Y +P ++D L++ ++PY LP Q +D +LK+M Sbjct: 238 AQLHRELPAAQVPWIRLLYL--YPSRVNDELLELVAANPRILPYFDLPFQHVADPVLKAM 295 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 NR + R+++DR+R + P I S F+VGFPGE ++D A + F Sbjct: 296 NRPYGEALVRELVDRVRRLVPRAVIRSTFMVGFPGEREEDVEALAAFLRDCRLEHVGMFT 355 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 Y G+ + + QV E +K +R L E ++ N A VGQ+ EVL+E E Sbjct: 356 YCNEEGSAAATLPGQVPEELKEQRFQRLMALQAEISLAANQARVGQVEEVLVEGVSSETE 415 Query: 427 KLVGRSPWLQS------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 L+ W Q+ V +N N G++++V I++ L G +V Sbjct: 416 LLLEGRAWFQAPEIDGCVYINEGNCRAGELVRVLISEAHPYDLVGGIV 463 >gi|23502783|ref|NP_698910.1| hypothetical protein BR1933 [Brucella suis 1330] gi|62290787|ref|YP_222580.1| hypothetical protein BruAb1_1909 [Brucella abortus bv. 1 str. 9-941] gi|82700698|ref|YP_415272.1| elongator protein 3 [Brucella melitensis biovar Abortus 2308] gi|148559183|ref|YP_001259755.1| hypothetical protein BOV_1860 [Brucella ovis ATCC 25840] gi|161619851|ref|YP_001593738.1| MiaB-like tRNA modifying enzyme [Brucella canis ATCC 23365] gi|163843956|ref|YP_001628360.1| MiaB-like tRNA modifying enzyme [Brucella suis ATCC 23445] gi|189025001|ref|YP_001935769.1| elongator protein 3 [Brucella abortus S19] gi|254690074|ref|ZP_05153328.1| elongator protein 3 [Brucella abortus bv. 6 str. 870] gi|254694562|ref|ZP_05156390.1| elongator protein 3 [Brucella abortus bv. 3 str. Tulya] gi|254696187|ref|ZP_05158015.1| elongator protein 3 [Brucella abortus bv. 2 str. 86/8/59] gi|254700574|ref|ZP_05162402.1| elongator protein 3 [Brucella suis bv. 5 str. 513] gi|254704944|ref|ZP_05166772.1| elongator protein 3 [Brucella suis bv. 3 str. 686] gi|254707542|ref|ZP_05169370.1| elongator protein 3 [Brucella pinnipedialis M163/99/10] gi|254708921|ref|ZP_05170732.1| elongator protein 3 [Brucella pinnipedialis B2/94] gi|254731105|ref|ZP_05189683.1| elongator protein 3 [Brucella abortus bv. 4 str. 292] gi|256030447|ref|ZP_05444061.1| elongator protein 3 [Brucella pinnipedialis M292/94/1] gi|256059907|ref|ZP_05450093.1| elongator protein 3 [Brucella neotomae 5K33] gi|256158431|ref|ZP_05456329.1| elongator protein 3 [Brucella ceti M490/95/1] gi|256253851|ref|ZP_05459387.1| elongator protein 3 [Brucella ceti B1/94] gi|256258327|ref|ZP_05463863.1| elongator protein 3 [Brucella abortus bv. 9 str. C68] gi|256370335|ref|YP_003107846.1| hypothetical protein BMI_I1955 [Brucella microti CCM 4915] gi|260169357|ref|ZP_05756168.1| hypothetical protein BruF5_13565 [Brucella sp. F5/99] gi|260546051|ref|ZP_05821791.1| elongator protein 3 [Brucella abortus NCTC 8038] gi|260567580|ref|ZP_05838050.1| elongator protein 3 [Brucella suis bv. 4 str. 40] gi|260755612|ref|ZP_05867960.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260758837|ref|ZP_05871185.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260760561|ref|ZP_05872904.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884638|ref|ZP_05896252.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261214886|ref|ZP_05929167.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261220989|ref|ZP_05935270.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261315023|ref|ZP_05954220.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261316420|ref|ZP_05955617.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261323879|ref|ZP_05963076.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261751082|ref|ZP_05994791.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261755644|ref|ZP_05999353.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|261758875|ref|ZP_06002584.1| elongator protein 3 [Brucella sp. F5/99] gi|265987491|ref|ZP_06100048.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265996948|ref|ZP_06109505.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|294851175|ref|ZP_06791848.1| MiaB-like tRNA modifying enzyme [Brucella sp. NVSL 07-0026] gi|297247174|ref|ZP_06930892.1| MiaB-like tRNA modifying enzyme [Brucella abortus bv. 5 str. B3196] gi|23348804|gb|AAN30825.1| conserved hypothetical protein [Brucella suis 1330] gi|62196919|gb|AAX75219.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82616799|emb|CAJ11889.1| Protein of unknown function UPF0004:MiaB-like tRNA modifying enzyme:Elongator protein 3/MiaB/NifB:Radical SAM [Brucella melitensis biovar Abortus 2308] gi|148370440|gb|ABQ60419.1| conserved hypothetical protein [Brucella ovis ATCC 25840] gi|161336662|gb|ABX62967.1| MiaB-like tRNA modifying enzyme [Brucella canis ATCC 23365] gi|163674679|gb|ABY38790.1| MiaB-like tRNA modifying enzyme [Brucella suis ATCC 23445] gi|189020573|gb|ACD73295.1| elongator protein 3 [Brucella abortus S19] gi|256000498|gb|ACU48897.1| hypothetical protein BMI_I1955 [Brucella microti CCM 4915] gi|260096158|gb|EEW80034.1| elongator protein 3 [Brucella abortus NCTC 8038] gi|260157098|gb|EEW92178.1| elongator protein 3 [Brucella suis bv. 4 str. 40] gi|260669155|gb|EEX56095.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260670993|gb|EEX57814.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675720|gb|EEX62541.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260874166|gb|EEX81235.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260916493|gb|EEX83354.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|260919573|gb|EEX86226.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261295643|gb|EEX99139.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261299859|gb|EEY03356.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261304049|gb|EEY07546.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261738859|gb|EEY26855.1| elongator protein 3 [Brucella sp. F5/99] gi|261740835|gb|EEY28761.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261745397|gb|EEY33323.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|262551416|gb|EEZ07406.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|264659688|gb|EEZ29949.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|294819764|gb|EFG36763.1| MiaB-like tRNA modifying enzyme [Brucella sp. NVSL 07-0026] gi|297174343|gb|EFH33690.1| MiaB-like tRNA modifying enzyme [Brucella abortus bv. 5 str. B3196] Length = 427 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 128/432 (29%), Positives = 211/432 (48%), Gaps = 34/432 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S M+ + G + ++ D I+ NTC + +A + + + R Sbjct: 7 TFGCRLNTYESEVMKREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144 +E D ++V GC AQ E + V++V+G + +Y LP+ + Sbjct: 61 -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDFGVN-Q 113 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 F K V+ V + + VD R R AF+ +Q GCD CTFC++PY RG S Sbjct: 114 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 168 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + VVD+ ++L+ NG E+ L G ++ ++ G L G + L+++ L RLR Sbjct: 169 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPGNLRLGKLVKTVLAQVPDLQRLR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ + + L++A LMP+LHL +Q+G D ILK M RRH + + R+ Sbjct: 228 LSSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +RPDI +D I GFP ET++ F+ ++ +V++ G F YSPR GTP + M QV Sbjct: 288 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 346 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + ER L+ + +A G +L+EK G V R+ ++ Sbjct: 347 EIVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQG- 399 Query: 445 HNIGDIIKVRIT 456 N G+II+ +T Sbjct: 400 -NAGEIIERIVT 410 >gi|15920732|ref|NP_376401.1| hypothetical protein ST0515 [Sulfolobus tokodaii str. 7] gi|15621515|dbj|BAB65510.1| 418aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 418 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 132/447 (29%), Positives = 228/447 (51%), Gaps = 35/447 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGC +N DS M + +G++ V+S + AD+IVLNTC +R + E++ Sbjct: 2 KVYIETYGCALNKGDSYIMMTLLKDRGHDIVDSYNQADVIVLNTCAVRLETEERMKQ--- 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI+ LK K G L ++AGC+ ++ ++ +P + +VG Q+ ++ E +E + Sbjct: 59 RIKELK----KIGKKL--IIAGCLVSSQPALVMSLAP-ESSIVGAQSIDKIVEAVESNKR 111 Query: 146 GKRVVDTDYSVEDK-FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + ++ V + FE G + + I +GC C FC+ R S Sbjct: 112 GIFLEESKELVTPRIFE-------------GKISIIPIADGCAGDCNFCITKLARKKLRS 158 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 +V+ ++ + G EI L Q+ A+ GLD +LL + EI+G +R Sbjct: 159 YPPRNIVNAVKEAVQKGAVEIELTAQDTAAY---GLDI-NYNLVELLKEILEIEGNYMIR 214 Query: 265 YTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 P D +++ D V +LHLPVQSG DR+LK MNR++T EYR+++ Sbjct: 215 IGMMTPELAFKQIDEILEIIKDKRVY-KFLHLPVQSGDDRVLKLMNRKYTVDEYRELVKE 273 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR P + I++D I+G PGE D+ F+ T++L+ +I + + YS R T ++M Q Sbjct: 274 IRDKIPIVNITTDIIIGHPGEDDEAFQNTINLIKEIKFERIHLAMYSIRPNTRSASM-PQ 332 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V +++K ER+ + E S + +G VL + G+ KG ++GR+ VV+ Sbjct: 333 VPDSIKKERMKIANEVYEEVAYSVHSEYLGSNALVLTTELGR-KGSIIGRTINYIPVVIK 391 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 + +G+ I V+IT+ L G+ + Sbjct: 392 DYD-KLGEWINVKITEASFFDLRGKFI 417 >gi|332665065|ref|YP_004447853.1| MiaB-like tRNA modifying enzyme [Haliscomenobacter hydrossis DSM 1100] gi|332333879|gb|AEE50980.1| MiaB-like tRNA modifying enzyme [Haliscomenobacter hydrossis DSM 1100] Length = 446 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 124/417 (29%), Positives = 200/417 (47%), Gaps = 24/417 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ + GC++N ++ + +F GY V+ AD+ V+NTC + + A K Sbjct: 3 TPRTVAFYTLGCKLNYSETSSIARLFEGAGYTEVDFEQGADVYVINTCSVTDFADRKC-- 60 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE- 141 R + ++ VVV GC AQ + EEI P V++V+G +R+ + ++ Sbjct: 61 -----RKVVRQALRHSPQAFVVVVGCYAQLKPEEIAE-IPGVDLVLGAAEKFRILDFIDT 114 Query: 142 -RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 GK +V E + + VD ++ +FL +Q+GC+ C+FC +P RG Sbjct: 115 LSKAPGKGMVHAGEVREAR----NFVDA-FSFGDRTRSFLKVQDGCNYKCSFCTIPQARG 169 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYS 253 S + VV A K+ + GV EI L G N+ + G G + ++ F DL+ Sbjct: 170 ASRSDKVENVVANAWKIAEMGVKEIVLTGVNIGDF-GNGTEVIEGTSPKKEAMFIDLIRE 228 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 L +++ + R R ++ P +D +I P+LH+P+QSG++ L+ M RR+T Sbjct: 229 LDQVEAISRFRISSIEPNLCTDEIIDFVAGSQRFAPHLHMPLQSGNNTQLRQMRRRYTRE 288 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 Y + RI+ P I D IVGFPGET +DF T + + + F YS R T Sbjct: 289 LYTDRVARIKQQMPHACIGVDVIVGFPGETQEDFLETYHFLHDLDISYLHVFTYSERANT 348 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 P ++M V NV+ ER L +++ F + +GQ VL E H K+K + G Sbjct: 349 PAADMDGVVPVNVRRERNEMLGILSEKKRRHFYEQHLGQTRLVLFEAH-KDKNLMAG 404 >gi|312130731|ref|YP_003998071.1| ssu ribosomal protein s12p methylthiotransferase [Leadbetterella byssophila DSM 17132] gi|311907277|gb|ADQ17718.1| SSU ribosomal protein S12P methylthiotransferase [Leadbetterella byssophila DSM 17132] Length = 436 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 139/457 (30%), Positives = 222/457 (48%), Gaps = 53/457 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--------DADLIVLNTCHIREKAAEKVYS 82 + GC N+ DS +M ++Q R N MD D+ ++V+NTC + A ++ Sbjct: 15 TLGCSKNLVDS----EMLYTQL--RGNGMDVSHESPEDDSQIVVINTCGFIDNAKQESID 68 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + R + K S I E V V GC++ +E+ P V+ G LP LL Sbjct: 69 TILRYVDAKESGIVEK----VYVTGCLSHRYKDELEVEIPQVDSWFGTN---ELPRLL-- 119 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + DY E ERL Y A++ I EGCD+ C+FC +P RG Sbjct: 120 -----KTLKADYKHELIGERLLTTPSHY-------AYMKIAEGCDRPCSFCAIPLMRGSH 167 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 +SR + ++V A+ ++ G E+ L+ Q++ + GLD +K S+LL LS+++GL Sbjct: 168 VSRPMDELVLSAKNMVAKGTKELILIAQDLTYY---GLDLYKKRNLSELLARLSDVEGLD 224 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R ++P +++ + + YL +P+Q GS +LK M R + ++++ Sbjct: 225 WIRLQYAYPAGFPMDILEVMAERTNICKYLDMPLQHGSSEMLKKMRRGIDRPKTEKLLET 284 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR P I + + IVG PGET+D F V+ + + F+YS T + ++ Sbjct: 285 IREKVPGIHLRTTLIVGHPGETEDMFEEMYRFVESQKFDRLGVFQYSHEEQTHSYSFVDD 344 Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434 V VK ER ++ LQ+ + E++ N A VGQ+ +VL++K KE G VGR SP Sbjct: 345 VPAEVKQERADIIMELQQGISEER---NKAKVGQVFKVLVDK--KESGHFVGRTEFDSPE 399 Query: 435 LQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELVV 469 + + VL H IGD +VRI LYG +V Sbjct: 400 VDNEVLIPAEHYVRIGDFTQVRIDSATEFDLYGTPIV 436 >gi|225851472|ref|YP_002731706.1| hypothetical protein PERMA_1953 [Persephonella marina EX-H1] gi|225645752|gb|ACO03938.1| conserved hypothetical protein [Persephonella marina EX-H1] Length = 439 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 126/432 (29%), Positives = 215/432 (49%), Gaps = 24/432 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC+MN +++ +E+ F +GY + D AD+ V+NTC + A + IR Sbjct: 10 TLGCRMNQFETSAIEEKFEREGYTLTDFRDKADIYVINTCTVTNDADR---TSRKTIRQA 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE----RARFG 146 K + D +VVV GC AQ +++ + I ++V+G + E++E R Sbjct: 67 K----RRNPDAVVVVTGCYAQVSPDKLAQMEEI-DLVIGNSHKDAVFEIVENFINERRQD 121 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K +D + +++F+ I G L +QEGC+ FC+FC++P+ RG S Sbjct: 122 KVFIDNIFR-QNEFKTFQI----STFYEGSRPILKVQEGCNSFCSFCIIPFARGKVRSAK 176 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +VV + L++ G EI L G ++ + G D + +S LL + +IK L R+R + Sbjct: 177 TEEVVKQISILVERGFKEIVLTGTQLSQF---GYDNGEDLYS-LLKDIVKIKDLYRVRLS 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + ++ D LI + + P+ HL +QS D++LK M R +T EY + ++ I R Sbjct: 233 SMGINELDDKLIDLITSEEKIAPHFHLSIQSADDKVLKDMKRDYTVKEYIEKVESIIKRR 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P+ AI +D I GFP E + F ++ ++ I +A F YS R GT S + + V Sbjct: 293 PETAIGTDIITGFPTEDEKSFENSLKNIEDIPFAYIHVFTYSERKGTTASKIGDLVPPQE 352 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 K R L++ ++ + F + +EVLI ++ GK VG + + +S+ + Sbjct: 353 KKRRTAILREISEKKSIEFRKRFLNNDLEVLI--ISEKDGKKVGITGNYIHIKFDSE-KD 409 Query: 447 IGDIIKVRITDV 458 I I VR+T+V Sbjct: 410 INQITSVRLTEV 421 >gi|225628132|ref|ZP_03786167.1| MiaB-like tRNA modifying enzyme [Brucella ceti str. Cudo] gi|237816294|ref|ZP_04595287.1| MiaB-like tRNA modifying enzyme [Brucella abortus str. 2308 A] gi|225616957|gb|EEH14004.1| MiaB-like tRNA modifying enzyme [Brucella ceti str. Cudo] gi|237788361|gb|EEP62576.1| MiaB-like tRNA modifying enzyme [Brucella abortus str. 2308 A] Length = 447 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 128/432 (29%), Positives = 211/432 (48%), Gaps = 34/432 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S M+ + G + ++ D I+ NTC + +A + + + R Sbjct: 27 TFGCRLNTYESEVMKREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 80 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144 +E D ++V GC AQ E + V++V+G + +Y LP+ + Sbjct: 81 -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDFGVN-Q 133 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 F K V+ V + + VD R R AF+ +Q GCD CTFC++PY RG S Sbjct: 134 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 188 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + VVD+ ++L+ NG E+ L G ++ ++ G L G + L+++ L RLR Sbjct: 189 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPGNLRLGKLVKTVLAQVPDLQRLR 247 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ + + L++A LMP+LHL +Q+G D ILK M RRH + + R+ Sbjct: 248 LSSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARA 307 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +RPDI +D I GFP ET++ F+ ++ +V++ G F YSPR GTP + M QV Sbjct: 308 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 366 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + ER L+ + +A G +L+EK G V R+ ++ Sbjct: 367 EIVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQG- 419 Query: 445 HNIGDIIKVRIT 456 N G+II+ +T Sbjct: 420 -NAGEIIERIVT 430 >gi|190570899|ref|YP_001975257.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019415|ref|ZP_03335221.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357171|emb|CAQ54586.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994837|gb|EEB55479.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 408 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 127/440 (28%), Positives = 223/440 (50%), Gaps = 36/440 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S +++ E V +V+++C + +A +V + +I Sbjct: 4 VITFGCRLNFYESELIKEALKKAKRENV--------VVVHSCAVTNEAERQVKQKIRKI- 54 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 KN KE ++V GC Q + + P V+ V+G Q R L Sbjct: 55 -YKNDPSKE-----IIVVGCAVQLDPKS-YSDIPGVSKVLGNQDKLRAENYLLN---NDE 104 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ +D VE +++G ++ R AF+ IQ GC+ CTFC + RG S ++ Sbjct: 105 ILVSDNQVEP-----ILINGFEDKSR---AFIEIQNGCNHSCTFCSITEARGNNRSVPVN 156 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++++ + I+NG E+ G ++ + G L G++ S + L +I L RLR ++ Sbjct: 157 NIIEQIKIFIENGYQEVVFTGVDITDF-GTDLFGKQSLGSMVRRVLKDIPQLKRLRLSSI 215 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++ D L+ + LMP+LHL +QSG++ ILK M RRH + + +++S+RP+ Sbjct: 216 DVAEVDDELMDLIANESRLMPHLHLSLQSGNNLILKRMKRRHNREQVIEFCHKMKSLRPN 275 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 IA +D I GFP ETD+ F+ T+DL+ KI +F YS R TP + M Q+ ENV+ Sbjct: 276 IAFGADIIAGFPTETDEMFQDTVDLLKKINVVYLHAFPYSERKNTPAARM-PQISENVRK 334 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 ER+ L++ +E SF + +G VL+E++ +GR+ + L S+ Sbjct: 335 ERVKHLREINKEMMSSFYQSLLGTEQSVLVEQNN------IGRTENFALIKLTSRVQ-AK 387 Query: 449 DIIKVRITDVKISTLYGELV 468 I+K + ++ + L G ++ Sbjct: 388 SIVKAHVKGIENNCLIGNII 407 >gi|288940768|ref|YP_003443008.1| MiaB-like tRNA modifying enzyme YliG [Allochromatium vinosum DSM 180] gi|288896140|gb|ADC61976.1| MiaB-like tRNA modifying enzyme YliG [Allochromatium vinosum DSM 180] Length = 454 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 142/470 (30%), Positives = 231/470 (49%), Gaps = 58/470 (12%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + P+ FV S GC DS R+ ++GY+ + +ADL+++NTC + A ++ Sbjct: 16 LAPRIGFV-SLGCPKATVDSERILTRLRAEGYQLQPTHAEADLVIVNTCGFIDSAVDESL 74 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + + +N R V+V GC+ A E + R P V V GP L E++ Sbjct: 75 DAIAEALD-ENGR--------VIVTGCLG-ARAELVRERHPEVLAVTGPHA---LEEVM- 120 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 V + D F L I G A+L I EGC+ C FC++P RG Sbjct: 121 -----AAVHAHLPAPHDPFTSL-IPPQGVRLTPSHYAYLKISEGCNHRCRFCIIPSLRGD 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +SR + +++DEA +L+++GV E+ ++ Q+ +A W G+ L + ++L Sbjct: 175 LVSRPIGEILDEAGRLVESGVRELLVVSQDTSAYGLDLGHRPDFWGGRPL---RTHITEL 231 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L E+ +RL Y +P D LI D V++PYL +P+Q GS+ +L++M RR Sbjct: 232 ARTLGELPAWIRLHYVYPYPH--VDELIPLMAD-GVILPYLDMPLQHGSESVLRAM-RRP 287 Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 A E +++DR+ R PD+ + S FIVGFPGET+DDF +D + + + F Y Sbjct: 288 AATE--KVLDRLARWRADCPDLVLRSTFIVGFPGETEDDFERLLDFLREARLDRVGCFPY 345 Query: 368 SPRLGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 S G + + V E VK ERL + +Q + ++++ A VGQ + VL++ E Sbjct: 346 SAVEGAAANELPNPVPEAVKQERLERFMDVQAGISREKLA---ARVGQRLTVLVD--AVE 400 Query: 425 KGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + ++ RS P + V+ I GD I+V IT+ L+ + V Sbjct: 401 EDAIIARSYGDAPEIDGEVIIEGAWEIDPGDFIEVVITEAGEHDLWAQPV 450 >gi|171472305|gb|ACB46858.1| MiaB [Pseudomonas stutzeri] Length = 441 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 141/469 (30%), Positives = 227/469 (48%), Gaps = 57/469 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ F+ S GC DS R+ +GY+ V S +DAD++V+NTC + A + Sbjct: 6 PKVGFI-SLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G I E G V+V GC+ E I P V V GPQ Y ++ + Sbjct: 65 IGE-------AIAENGK--VIVTGCMGVDENN-IRGVHPSVLAVTGPQQYEQVVNAVHE- 113 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 VV + D F L G R A+L I EGC+ C+FC++P RG + Sbjct: 114 -----VVPPNIE-HDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHTCSFCIIPSMRGKLV 166 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V+ EA +L+ GV E+ ++ Q+ +A W G+ + K +L Sbjct: 167 SRPVGDVLSEAERLVKAGVKEVLVISQDTSAYGVDLKYKLDFWNGQPV---KTRMLELCE 223 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L ++ VRL Y +P + A G ++PYL +P Q S ++LK+M R A Sbjct: 224 ELGKMGVWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKAMKR--PA 278 Query: 313 YEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 +E + + I + R + P++ I S FIVGFPGET++DF+ +D + + + F+YSP Sbjct: 279 FEDKTLARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPV 338 Query: 371 LGTPGSNM-LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 G P M LE V + +K E R + Q+ + +++ VGQ ++VLI+K ++ Sbjct: 339 DGAPAEAMDLEPVPDEIKQERWDRFMAHQQAISAERLQRK---VGQELDVLIDKVDEDGA 395 Query: 427 KLVGRSPWLQS-------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +GRS W + V +++ GD ++VR+T+ L+ E++ Sbjct: 396 --IGRS-WADAPEIDGMVYVDSAQPLQPGDKVRVRVTNADEYDLWAEVI 441 >gi|15966991|ref|NP_387344.1| hypothetical protein SMc03855 [Sinorhizobium meliloti 1021] gi|307302459|ref|ZP_07582216.1| MiaB-like tRNA modifying enzyme [Sinorhizobium meliloti BL225C] gi|307316211|ref|ZP_07595655.1| MiaB-like tRNA modifying enzyme [Sinorhizobium meliloti AK83] gi|15076264|emb|CAC47817.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306898051|gb|EFN28793.1| MiaB-like tRNA modifying enzyme [Sinorhizobium meliloti AK83] gi|306903129|gb|EFN33719.1| MiaB-like tRNA modifying enzyme [Sinorhizobium meliloti BL225C] Length = 424 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 120/400 (30%), Positives = 186/400 (46%), Gaps = 30/400 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M G + +++NTC + +A + Sbjct: 6 VITFGCRLNTYESEVMRAEAEKAGLN--------NAVLVNTCAVTAEAVRQARQA----- 52 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142 +E ++V GC AQ E E + V+ V+G + +Y LP+ Sbjct: 53 --IRRARRENPHARIIVTGCAAQTEKETFAEMAE-VDAVLGNEEKLASVSYRSLPDFGVS 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A RV D + + +DG V AF+ +Q GCD CTFC++PY RG Sbjct: 110 AEEKLRVNDIMSVRATAPQMVKHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + VVD+AR+L ++G EI L G + ++ G L G L ++ ++R Sbjct: 164 RSVPMGAVVDQARRLAESGYREIVLTGVDATSY-GADLPGTPTLGLLAKTLLKQVPEILR 222 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ + L+ + MP+LHL +Q G D ILK M RRH++ + R D + Sbjct: 223 LRLSSIDSIEADGHLLDLIAEEPRFMPHLHLSLQHGDDLILKRMKRRHSSADARAFCDEV 282 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RP I++ +D I GFP ET+ F M L + G A F YSPR GTP + M Q+ Sbjct: 283 RRLRPGISLGADMIAGFPTETEPMFENAMRLAEDCGIAHLHVFPYSPRPGTPAARM-PQL 341 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 D + ER L+ K E + +G +L+E +G Sbjct: 342 DRALVKERAARLRAKGAELHAGHLEGMIGSSQTILVEMNG 381 >gi|312879755|ref|ZP_07739555.1| MiaB-like tRNA modifying enzyme [Aminomonas paucivorans DSM 12260] gi|310783046|gb|EFQ23444.1| MiaB-like tRNA modifying enzyme [Aminomonas paucivorans DSM 12260] Length = 454 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 122/402 (30%), Positives = 204/402 (50%), Gaps = 28/402 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 GC+ N Y+ + +G V+ S +D D +VL TC + A KV R Sbjct: 18 GCRTNQYEGDALASELAERGAILVDPSSEDLDGVVLLTCTVTAVADRKV-------RQEL 70 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV- 150 + ++V AGC AQ RR + +VG + +P+LL R R G+ V Sbjct: 71 RRLRRRHPRAILVAAGCWAQEADPREARRLG-ADHLVGNRLKAAIPDLLSRLRAGEEVPF 129 Query: 151 --DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 D V + ++ L + R AF+ +Q+GC C +C+VP RG +SR Sbjct: 130 LNRRDVGVCEDWDDLRL----SRTCRHTRAFVKVQDGCSHGCRYCIVPRVRGRSVSRPPE 185 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 V++E R L+ +G E+ L G ++ + R +G D +L+ L+ ++GLVRLR+ + Sbjct: 186 DVLEEVRGLVGSGCREVVLTGVHLGLYGRDRGTD-----LGELVKRLARVEGLVRLRFGS 240 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVR 326 P + + L+ G+ ++ P+LHLP+QSG D +L M R +TA + ++++ R + Sbjct: 241 LEPFGLGESLLDVLGETEIFCPHLHLPLQSGDDGVLDRMGRGYTAAAFARLVEAARRRLG 300 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 D+ +S+D +VGFPGE + FR T+DLV+ + + F YSPR GTP + + Sbjct: 301 EDLHVSTDLLVGFPGEEEVPFRNTLDLVETLELGRLHVFPYSPRAGTPAAAWPRPDPAAL 360 Query: 387 --KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 + +R L L + L ++ F +G+ +EVL+E+ + +G Sbjct: 361 RERVQRALGLGRTLLDR---FASRFLGREVEVLVERASEGEG 399 >gi|93006539|ref|YP_580976.1| hypothetical protein Pcryo_1715 [Psychrobacter cryohalolentis K5] gi|122989854|sp|Q1QA11|RIMO_PSYCK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|92394217|gb|ABE75492.1| conserved hypothetical protein [Psychrobacter cryohalolentis K5] Length = 531 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 130/424 (30%), Positives = 209/424 (49%), Gaps = 37/424 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ GY+ + + ADL+V+NTC E A ++ Sbjct: 87 APKIGFV-SLGCPKALVDSERIITELSRDGYQVASDYEGADLVVVNTCGFIESAVQESLD 145 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + KN + V+V GC+ + E ++I P V V G Y + + Sbjct: 146 AIGEAIS-KNGK--------VIVTGCLGK-EADKIREMHPAVLAVTGAHAYDDVIRAVA- 194 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K D S + K + ++ + G A+L I EGC+ CTFC++P RG Sbjct: 195 LHVPKPDCGLDASYDPKIDLIN--EAGIKLTPSHYAYLKISEGCNHRCTFCIIPSLRGDL 252 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR + V++EA L GV E+ ++ Q+ +A W G L K F DL Sbjct: 253 VSRPIDSVMNEALALKKAGVKELLIISQDTSAYGLDLKYKTSFWNGMPL---KSKFYDLC 309 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L+++ VRL Y +P D +++ G+ L+PYL +P Q S RILK+M R Sbjct: 310 QALNDLGIWVRLHYVYPYPH--VDKVVELMGEKK-LLPYLDIPFQHASHRILKAMKRPAH 366 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I R + PDI I S F+VGFPGET++DF+ +D + + + +F YS Sbjct: 367 SENTLARIHAWREICPDIVIRSTFVVGFPGETEEDFQCLLDWLVEARLDRVGAFTYSEVE 426 Query: 372 GTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 G +++ V E+VK ERL+ LQ+ + Q++ +G+ + VL+++ +E+G Sbjct: 427 GAVANDLPNHVPEDVKQERYERLMTLQQDISAQKLQEK---IGKTLMVLVDEIDREEGVA 483 Query: 429 VGRS 432 + RS Sbjct: 484 ICRS 487 >gi|312959323|ref|ZP_07773840.1| hypothetical protein PFWH6_1221 [Pseudomonas fluorescens WH6] gi|311286040|gb|EFQ64604.1| hypothetical protein PFWH6_1221 [Pseudomonas fluorescens WH6] Length = 446 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 140/469 (29%), Positives = 228/469 (48%), Gaps = 61/469 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V++ DAD++V+NTC + A + Sbjct: 10 PKVGFV-SLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEV 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ EG I P V V GPQ Y Sbjct: 69 IGE-------AIKENGK--VIVTGCMGVEEGN-IRNVHPSVLAVTGPQQY---------- 108 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 109 ---EQVVNAVHDVVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSM 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A W G + K Sbjct: 166 RGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPV---KTRM 222 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 ++L +LS + VRL Y +P + A G ++PYL +P Q S ++LK+M Sbjct: 223 TELCEALSSLGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKVLKAMK 279 Query: 308 RRHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 R A+E + + I R + PD+ I S FIVGFPGET++DF+ +D + + + F Sbjct: 280 R--PAFEDKTLARIKNWREICPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCF 337 Query: 366 KYSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 +YSP G P + + L V ++VK ER + Q+ + ++ +G+ IEVLI++ Sbjct: 338 QYSPVEGAPANLLDLPVVPDDVKQDRWERFMAHQQAISSARLQLR---IGKEIEVLIDEV 394 Query: 422 GKEK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466 ++ G+ +P + V ++ GD + +TD L+ E Sbjct: 395 DEQGAVGRCFFDAPEIDGNVFIDDASGLKPGDKVWCTVTDADEYDLWAE 443 >gi|288920752|ref|ZP_06415052.1| RNA modification enzyme, MiaB family [Frankia sp. EUN1f] gi|288347828|gb|EFC82105.1| RNA modification enzyme, MiaB family [Frankia sp. EUN1f] Length = 337 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 100/235 (42%), Positives = 143/235 (60%), Gaps = 6/235 (2%) Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E R V+ E L+ G EITLLGQNVN++ G+ L G+ F+ LL + I+GL Sbjct: 1 ERDRRPGDVLAEVEALVAEGALEITLLGQNVNSY-GRSL-GDPGAFARLLRACGNIEGLE 58 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+T+ HPRD +D +I+A + P LH+P+QSGSD +L+ M R + + I++R Sbjct: 59 RVRFTSPHPRDFTDDVIEAMAQTPNVCPQLHMPLQSGSDAVLRRMRRSYRRERFLGIVER 118 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P AI++D IVGFPGET++DF T+D+V +A AF+FKYSPR GTP + M Sbjct: 119 VREAIPHAAITTDIIVGFPGETEEDFADTLDVVRAARFAGAFTFKYSPRPGTPAAEMDGA 178 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK---EKGKLVGRS 432 VD V +ER L E + N A VG+ +E+L+ E G+ E G+L GR+ Sbjct: 179 VDPAVVSERYERLASLQDEMSWAENRAQVGRRVEILVSEGEGRKDSETGRLSGRA 233 >gi|255034257|ref|YP_003084878.1| MiaB-like tRNA modifying enzyme [Dyadobacter fermentans DSM 18053] gi|254947013|gb|ACT91713.1| MiaB-like tRNA modifying enzyme [Dyadobacter fermentans DSM 18053] Length = 442 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 118/403 (29%), Positives = 202/403 (50%), Gaps = 17/403 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N +S + MF +GY +V ++ D+ ++NTC + E A +K R + Sbjct: 8 TLGCKLNYSESSSIGRMFEDKGYTKVEFNENPDIFIINTCSVTENADKKC-------RKI 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 K D V + GC AQ + +EI P V+ V+G +RL EL+ E+A G+ Sbjct: 61 VREAQKINADGYVAIIGCYAQLKPKEI-SEIPGVDAVLGAAEKFRLVELIDTFEKAPSGQ 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 +++ E + Y+ FL +Q+GCD C +C +P RG S S+ Sbjct: 120 PAQVIASTIDHAVEYHT----SYSLNDRTRTFLKVQDGCDYPCAYCTIPLARGKSRSDSI 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +V AR + V EI L G N+ + + E+ TF DL+ +L E++G+ R R ++ Sbjct: 176 ENIVKAARDIAARDVKEIVLTGVNIGDFGLRNGVREE-TFLDLVKALDEVEGIERFRISS 234 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D +I+ P+ H+P+QSGS+++L M RR+ Y + + +I+S+ P Sbjct: 235 IEPNLLTDEIIEFVAQSKRFAPHFHIPLQSGSNKVLGLMKRRYKRELYTERVAKIKSLMP 294 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D I D IVG PGET + F T ++++ + F YS R T + V++ + Sbjct: 295 DCCIGVDVIVGHPGETKELFEETYHFLNELEVSYLHVFTYSERENTAALAIRPIVNKGER 354 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 AER L +++ F + +G+ +VL E + G+++G Sbjct: 355 AERSKMLHILSDKKKRFFYETQIGKEGKVLFEDE-VQNGQMLG 396 >gi|94497461|ref|ZP_01304031.1| hypothetical protein SKA58_07900 [Sphingomonas sp. SKA58] gi|94423092|gb|EAT08123.1| hypothetical protein SKA58_07900 [Sphingomonas sp. SKA58] Length = 459 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 139/463 (30%), Positives = 217/463 (46%), Gaps = 54/463 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ S GY+ AD++++NTC + A E+ +G Sbjct: 20 SLGCPKNLVDSERILTKLRSDGYQMSADYAGADVVLVNTCGFLDSAKEESLEAIGEA--- 76 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I E G V+V GC+ E E I + P V V G Y ++ V Sbjct: 77 ----IAENG--RVIVTGCMGD-EAEVIRAKFPQVLAVTGAHQYEQV---------VNAVH 120 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D + + F L + +GG ++L I EGC+ C+FC++P RG +SR + V Sbjct: 121 DASPPIPNAFVDL-VPEGGLKLTPRHYSYLKISEGCNHRCSFCIIPSIRGDLVSRRIDAV 179 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA KL+ G E+ ++ Q+ +A W+G+ + + L L +G Sbjct: 180 LREAEKLVAAGTKELLVISQDTSAYGVDTRHDVRQWKGRDVRAHMTDLARELGQLRTAEG 239 Query: 260 ---LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 VRL Y +P D +I D +L PYL +P Q + +LK+M R A E + Sbjct: 240 RAPWVRLHYVYPYPH--VDQVIPLMAD-GLLTPYLDIPFQHAAPNVLKAMKR--PANEAK 294 Query: 317 QIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 ++DRIR R PDIAI S F+VGFPGET+ DF+ +D +D+ + +F++ P G Sbjct: 295 -VLDRIRKWRAICPDIAIRSSFVVGFPGETEADFQYLLDWLDEAQLDRVGAFRFEPVEGA 353 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKL--V 429 + + + V E VK ER + ++ + A VG+I+ V+I++ G+ E G + Sbjct: 354 AANALPDAVTEEVKEERYQRIMERTAAISAAKLQAKVGRILPVIIDEVGEPDEDGSIGAT 413 Query: 430 GRS----PWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465 RS P + V + H GDI+ + + D LYG Sbjct: 414 ARSQADAPEIDGNVFLRDVGEGHRAGDIVDIVVEDADDHDLYG 456 >gi|226226580|ref|YP_002760686.1| hypothetical protein GAU_1174 [Gemmatimonas aurantiaca T-27] gi|226089771|dbj|BAH38216.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 473 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 125/412 (30%), Positives = 200/412 (48%), Gaps = 23/412 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFL 84 +F + + GC N DS R + G E V + DAD++V+NTC + A AE + + + Sbjct: 3 KFGLVTLGCDKNTVDSERYLADLVAHGAEAVQDLRDADVVVVNTCGFIDAAKAESIEAIV 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRL-PELLER 142 +R+K+ G V A GC+ + +E+L P V+V +G RL PEL+ER Sbjct: 63 ------DAARLKDEGRCKAVFAIGCMVERHKDELLEALPEVDVFLGNSETDRLVPELVER 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +V E RL D + R +L I EGCD C FC +P RG Sbjct: 117 GLIGGSLV------EHPGVRLFSGDAAHVR------YLKISEGCDHGCAFCAIPLMRGKH 164 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S +L ++V EA+ L G EI L+ Q++ + DG +LL +L + Sbjct: 165 RSFALDELVREAQLLEVQGAREINLVAQDLAHYGRDRRDGHG--LPELLEALVRETSIPW 222 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R + ++ L++ ++ YL P+Q GSD +L M R R+ + R Sbjct: 223 IRNMYLYSTGITPRLLEVIAAHPRIVRYLDTPMQHGSDAVLTRMRRPERQKTIRERLARY 282 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + PD+A+ + IVGFPGET+DDF D ++++ + + F YSP+ GT M + V Sbjct: 283 RDIVPDLAVRTSVIVGFPGETEDDFNILCDFLEEMQFDRVGVFTYSPQEGTRAHAMEDDV 342 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 +++K ER +++ R + +G+ VL+E+ G + R+PW Sbjct: 343 ADSIKQERKERIEELQRAITAERYERFLGREARVLVERRGDYPDVWMARAPW 394 >gi|237740317|ref|ZP_04570798.1| Fe-S oxidoreductase [Fusobacterium sp. 2_1_31] gi|229422334|gb|EEO37381.1| Fe-S oxidoreductase [Fusobacterium sp. 2_1_31] Length = 439 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 125/447 (27%), Positives = 226/447 (50%), Gaps = 40/447 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ +++ +GYE V D +D+ ++N+C + A K + L R + + Sbjct: 13 GCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI-- 70 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPELL 140 + V+V GC AQ EIL +S IVN V + Sbjct: 71 -----NPEAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS-----F 120 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 ER + G + +Y E +F L + A++ IQ+GC+ FC++C +P+ RG Sbjct: 121 EREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFARG 170 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR ++ E KL+++G E+ L+G +++A+ G+ + EK +F LL + +IK L Sbjct: 171 KSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GEDFE-EKDSFESLLEDILKIKDL 228 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + +P ++D I + + LMP+LH+ +QS D +LK+M R + + R+ + Sbjct: 229 KRVRIGSVYPDKITDKFIDLFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSALIRESLL 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +++S ++ ++D IVGFP E D F+ T +++ +I ++ F+YS R GT SNM Sbjct: 288 KLKSKVKNMEFTADVIVGFPKEDDSMFQNTRNVIKEIEFSGLHIFQYSDREGTIASNMDG 347 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 +VD K +R L + +E + + +G++ + + +++G+ G S V Sbjct: 348 KVDAKTKKQRADSLDQLKQEMILESREKYLGKV--LEVLVEEEKEGEYFGYSQNYLRVKF 405 Query: 441 NSKNHN-IGDIIKVRITDVKISTLYGE 466 S+ N I +I +I ++ L GE Sbjct: 406 KSEEKNLINQLINTKIKSIEDDILIGE 432 >gi|70728629|ref|YP_258378.1| ribosomal protein S12 methylthiotransferase [Pseudomonas fluorescens Pf-5] gi|123734889|sp|Q4KHA5|RIMO_PSEF5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|68342928|gb|AAY90534.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Pseudomonas fluorescens Pf-5] Length = 445 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 142/471 (30%), Positives = 232/471 (49%), Gaps = 65/471 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V++ DAD++V+NTC + A + Sbjct: 10 PKVGFV-SLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEV 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ EG I P V V GPQ Y Sbjct: 69 IGE-------AIKENGK--VIVTGCMGVEEGN-IRDVHPSVLAVTGPQQY---------- 108 Query: 144 RFGKRVVDTDYSV-EDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V K + ++D G A+L I EGC+ C+FC++P Sbjct: 109 ---EQVVNAVHEVVPPKQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSM 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A W G + K Sbjct: 166 RGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPV---KTRM 222 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 ++L +LS + VRL Y +P + A G ++PYL +P Q S ++LK+M Sbjct: 223 TELCEALSTLGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKVLKAMK 279 Query: 308 RRHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 R A+E + + I R + P++ I S FIVGFPGET++DF+ ++ + + + F Sbjct: 280 R--PAFEDKTLARIKNWREICPELIIRSTFIVGFPGETEEDFQYLLNWLTEAQLDRVGCF 337 Query: 366 KYSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 +YSP G P +++ LE V + VK ER + Q+++ ++ +G+ IEVLI++ Sbjct: 338 QYSPVEGAPANDLDLEVVPDEVKQDRWERFMAHQQEISSARLQQR---IGKEIEVLIDE- 393 Query: 422 GKEKGKLVGR----SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466 ++ VGR +P + V + + GD + R+TD L+ E Sbjct: 394 -VDENGAVGRCFFDAPEIDGNVFIDGAGDLKPGDKVWCRVTDADEYDLWAE 443 >gi|146337530|ref|YP_001202578.1| putative MiaB-like tRNA modifying enzyme [Bradyrhizobium sp. ORS278] gi|146190336|emb|CAL74332.1| putative MiaB-like tRNA modifying enzyme [Bradyrhizobium sp. ORS278] Length = 443 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 135/406 (33%), Positives = 201/406 (49%), Gaps = 41/406 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N ++S + + G + D IV+N+C + +A + IR Sbjct: 5 VVTFGCRLNAFESELIARHVEAAGAD--------DTIVINSCAVTNEAVAQARQ---SIR 53 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLER 142 LK R +VV GC AQ + + + P V+ V+G P + ++L Sbjct: 54 KLKRERPYA----RIVVTGCAAQTQAD-MFAAMPEVDRVIGNDDKLRPDAWRATTQVLAA 108 Query: 143 ARFG-----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVP 196 RFG K V +V + L VDG +RG+ F+ +Q GCD CTFC++P Sbjct: 109 PRFGIDATEKVAVSDIMAVTEMAPHL--VDGF---QRGLPRVFVQVQNGCDHRCTFCIIP 163 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 Y RG S + VVD+ R L + G EI L G ++ ++ G L G + L Sbjct: 164 YGRGNSRSVPMGAVVDQVRTLAERGHAEIVLTGVDLTSY-GADLPGTPKLGLLVKQILRH 222 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + L RLR ++ + L+ A D LMP+LHL +Q+G D ILK M RRH + Sbjct: 223 VPELKRLRISSIDSIEADADLLDALADDARLMPHLHLSLQAGDDLILKRMKRRHVRADAI 282 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 D++R +RPDIA+ +D I GFP ET++ F ++DLV+ G F YSPR GTP + Sbjct: 283 AFCDQVRRLRPDIALGADLIAGFPTETEEMFTRSLDLVEACGLTLLHVFPYSPRPGTPAA 342 Query: 377 NMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 M QVD V +A RL + + +++ DA +G EVLIE Sbjct: 343 RM-PQVDGAVIRDRARRLRAVGEAALRRRL---DAEIGCAREVLIE 384 >gi|323143992|ref|ZP_08078646.1| ribosomal protein S12 methylthiotransferase RimO [Succinatimonas hippei YIT 12066] gi|322416241|gb|EFY06921.1| ribosomal protein S12 methylthiotransferase RimO [Succinatimonas hippei YIT 12066] Length = 441 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 134/451 (29%), Positives = 213/451 (47%), Gaps = 38/451 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + S GC N+ D+ R+ + ++GY+ + +D DLIV+NTC A E+ +G Sbjct: 6 RIGLISLGCAKNLVDTERLTSVLIAKGYQIEANYEDCDLIVVNTCGFISPAVEESLEAIG 65 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + + V+V GC+ A+ + IL+ P V V GP T RA Sbjct: 66 QAVSYAPK---------VIVTGCLG-AKAQLILKEYPQVAAVYGPGT---------RASV 106 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 R + T + + G A+L I EGC C FC++P RG SR Sbjct: 107 -LRGIRTLIGEPPQEAVQHVNPSGILLTPPHYAYLKIAEGCRHRCAFCIIPSLRGPLRSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 + + EA L GV E+ ++ Q+ + + G D + T S L L+ +K +R+ Sbjct: 166 NPDDIYKEASDLTSRGVKELLIIAQDSSDY---GFDLKNQPTLSQLCKKLASLKRWLRIH 222 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y +P ++ +++ D ++++PYL +P+Q S+RILK M R + I+ R Sbjct: 223 YV--YPSKEANKIVELMAD-NIVLPYLDVPLQHASERILKQMRRPGNTEKMLATIENWRK 279 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +RPDIAI S FI GFPGET++DF + + + + F YS G ++ V Sbjct: 280 IRPDIAIRSTFITGFPGETEEDFSELLSFIKEAKLDRVGCFPYSDVDGAAANDFPNPVPL 339 Query: 385 NVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----- 437 ++ ER L + ++Q+S A +G++ +V+I+ E G VGRS + Sbjct: 340 EIREERAAILMET--QEQISREKLKARIGKVYDVVIDTLN-EDGIAVGRSKYEAPDVDGI 396 Query: 438 -VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 + N+K GDI+KV IT L GEL Sbjct: 397 ITIHNAKGIREGDIVKVEITASDTHDLQGEL 427 >gi|315187099|gb|EFU20856.1| MiaB-like tRNA modifying enzyme [Spirochaeta thermophila DSM 6578] Length = 445 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 135/446 (30%), Positives = 214/446 (47%), Gaps = 42/446 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + F G+ DL ++NTC + K+ +K + +I Sbjct: 9 TLGCKLNQYETEGIAAAFREAGFRIGEFPQSGDLYIVNTCTVTSKSEQKARRIIRKI--- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV------NVVVGPQTYYRLP-ELLERA 143 +E + LVVV GC Q E +E+ S V + RLP E L+ + Sbjct: 66 ----AREHPEALVVVTGCYPQLERDEVQALSDRVIALPLEEKPLLLHLPSRLPDEDLDPS 121 Query: 144 RFGK--RVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R + + + T + ++ R L VD R +FL IQ+GCD+ CT+C VP RG Sbjct: 122 RVERLLQEIRTQFPLDRTAGRFLYRVDRPAFHAR---SFLKIQDGCDRRCTYCRVPLARG 178 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 +S ++++ ++L GV EI L G N+ +R + LD L ++ Sbjct: 179 RAVSDDPARILQRVQELEGRGVSEIVLTGVNLAQYRWESLDLGGLLLRLLSHT-----SR 233 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R R ++ P S+ L A + P+ HLPVQSGS+R+L+ M R +TA E +I Sbjct: 234 LRFRISSLEPEGFSEALWDALSSPRIC-PHFHLPVQSGSNRVLRKMGRWYTAEEISALIA 292 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R V D IS DFIVGFPGET +DF AT +D+ ++ A F+YSPR GT Sbjct: 293 RLRDVSTDPFISGDFIVGFPGETREDFEATRAFLDENAFSGAHLFRYSPRPGTAAYASKA 352 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 V E V ER L + ++ G+++EV+ E+ + G+ + V Sbjct: 353 HVPERVAKEREEALHACVEVHASAYLARQKGRVVEVIPEQERVKAGQ--------RYAVG 404 Query: 441 NSKNHNI--------GDIIKVRITDV 458 S+N+ + G+ ++V + DV Sbjct: 405 TSENYLLVWVPVPLEGETVRVEVGDV 430 >gi|291542169|emb|CBL15279.1| SSU ribosomal protein S12P methylthiotransferase [Ruminococcus bromii L2-63] Length = 446 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 127/445 (28%), Positives = 211/445 (47%), Gaps = 18/445 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D+ + ++G+ VN DAD +++NTC E A ++ + + + L Sbjct: 9 SLGCAKNQVDAEMLLYTLKNRGFIIVNDPADADAVIVNTCGFIESAKQESINEIIELGKL 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K+ EG ++V GC+AQ EI + V+ V+G + +++ G++ Sbjct: 69 KD----EGKIKAIIVTGCLAQRYKSEISEQLYEVDSVIGIGANETIADIVLETLDGQKC- 123 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 S DK L + G TA+L I EGCD C++C +P RG SR + V Sbjct: 124 ---ESFPDKV-CLPLEGGRILSTPPYTAYLKIAEGCDNRCSYCAIPMIRGRFRSRDIEDV 179 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V EA L + GV E+ ++ Q+ + G+ G K ++LL L I G +R +P Sbjct: 180 VKEAEGLAERGVKELNVIAQDTTRF-GEDKYG-KPMLAELLRRLCRIDGFKWIRVLYCYP 237 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D LI D ++ Y+ +P+Q +L+ MNR ++++I+ P++ Sbjct: 238 DRITDELIDTIAGEDKIVKYMDIPLQHCDGDVLRRMNRHGDRESLTALMNKIKDKIPNVI 297 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 S FI GFPGET++ F + + + + F YSP T + M +Q+DE +K +R Sbjct: 298 FRSTFITGFPGETEEQFNELAEFAADMKFQRLGCFAYSPEEDTKAAEMPDQIDEEIKQKR 357 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL---NSK 443 + + ++ + ++ VG+ IEVL+E K GRS P + V + + Sbjct: 358 ADIIMEHQQQVMAEYCESLVGKEIEVLVEGFDKLAECFFGRSYADAPEVDGCVFFTCDGE 417 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 GD +KVR+TD GE V Sbjct: 418 KPKAGDFVKVRVTDYTGCDPVGEFV 442 >gi|159041572|ref|YP_001540824.1| RNA modification protein [Caldivirga maquilingensis IC-167] gi|157920407|gb|ABW01834.1| RNA modification enzyme, MiaB family [Caldivirga maquilingensis IC-167] Length = 422 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 143/460 (31%), Positives = 227/460 (49%), Gaps = 60/460 (13%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE-------KAAEK 79 +++++YGC +N DS ME+ GY +VN ADLI++NTC +RE KA EK Sbjct: 4 YYIETYGCWLNKADSALMEEDLRRMGYVKVNDPAQADLILVNTCAVREDSEIRELKAIEK 63 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 YS LG+ ++VAGC+ +A EI+R +P ++V P + L EL Sbjct: 64 -YSRLGK---------------KLIVAGCLTKARPSEIMRLAPDA-LIVNPSSVENLAEL 106 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 L+ + ERL + Y V + IQ GC C++CV+ YTR Sbjct: 107 LKGG-------------VNLTERLMVRIPKYYESSHVYV-VPIQVGCLGNCSYCVIKYTR 152 Query: 200 G---IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYS-L 254 G S LS V + K + G EI L GQ ++A+ + KG D DLL + L Sbjct: 153 GGMGWVKSADLSVVKESIAKAVARGAREIYLTGQEISAYGKDKGYD-----LVDLLEAVL 207 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL------MPYLHLPVQSGSDRILKSMNR 308 +++G +R P ++ + H +DV+ + H+PVQSGSD++L+ M R Sbjct: 208 RDVEGRYLIRLGMLEPLELEGMI---HRLIDVIKNDWRIYRFFHIPVQSGSDKVLRLMKR 264 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 ++T +++ ++ IR + I++D IVG PGE D DF+ ++ L+ ++G + +YS Sbjct: 265 KYTVDLFKREVELIRRSFRNSFIATDIIVGHPGEDDSDFQESVRLIRELGIDKVHVARYS 324 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 PR T + M QV + VK +R L K E S N VG E LI G + L Sbjct: 325 PRPFTEAAYM-RQVPDQVKKQRSSMLSKVALEVAYSRNLEYVGGTYEGLISSIGFKGRGL 383 Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + R + V++N ++G +K+++T L G+++ Sbjct: 384 MARLMDYRPVIIN--EGDLGSFVKIKVTGASSINLIGKII 421 >gi|260464162|ref|ZP_05812355.1| MiaB-like tRNA modifying enzyme [Mesorhizobium opportunistum WSM2075] gi|259029965|gb|EEW31248.1| MiaB-like tRNA modifying enzyme [Mesorhizobium opportunistum WSM2075] Length = 446 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 131/447 (29%), Positives = 211/447 (47%), Gaps = 46/447 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P R V ++GC++N Y+S ++ + ++ NTC + +A + Sbjct: 18 APSRIDVVTFGCRLNTYES----EVMRREAETAGLGALAGGAVIFNTCAVTGEAVRQARQ 73 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL 136 + + R ++ ++V GC AQ E E+ V++V+G +Y L Sbjct: 74 AIRKAR-------RDNPQARIIVTGCAAQTEPEKFAAMDE-VDLVLGNEEKLRAHSYRAL 125 Query: 137 PEL----LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 P+ E+AR V+ +SV + + VD R R AF+ +Q GCD CTF Sbjct: 126 PDFGVNDTEKAR-----VNDIFSVRETAGHM--VDAIEGRAR---AFVQVQNGCDHRCTF 175 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 C++PY RG S + VV++ ++L NG EI L G ++ ++ G L G + Sbjct: 176 CIIPYGRGNSRSVPMGAVVEQVKRLAGNGYAEIVLTGVDMTSF-GADLPGAPKLGKLVKT 234 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L ++ + RLR ++ + D L+ A + LMP+LHL +QSG D ILK M RRH Sbjct: 235 ILRQVPDVKRLRLSSIDSIEADDELLDAIANEPRLMPHLHLSLQSGDDMILKRMKRRHLR 294 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + + + +R +RP I +D I GFP ETDD F ++++V + G F +SPR G Sbjct: 295 DQSIRFCEDVRKLRPAIVFGADIIAGFPTETDDMFENSINIVAECGLTHLHVFPFSPREG 354 Query: 373 TPGSNMLEQVDENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 TP + M + E VK A RL + + +S + G +LIE+ G +G Sbjct: 355 TPAARMPQLRREVVKQRAARLRAAGEAAYRRHLS---SLPGTRQSILIERDG------LG 405 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITD 457 R+ L + G+I++ ITD Sbjct: 406 RTEGFTLAALGTGAP--GEIVEATITD 430 >gi|189485228|ref|YP_001956169.1| hypothetical protein TGRD_225 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287187|dbj|BAG13708.1| conserved hypothetical protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 405 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 103/359 (28%), Positives = 185/359 (51%), Gaps = 43/359 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +++++ ++GC++N Y+S + + F +E ++AD+I+ N+C + A +K+ FL Sbjct: 2 KKYYIHTFGCKVNQYESQLISEKFRKDNFECTQKPEEADIIIFNSCTVTADADKKLEYFL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R L N R K +++ GC+ + + +I P + ++ + Sbjct: 62 RRATKLPN-RPK------IMLTGCIVKNKNIDIKNLFPDIEIITDKTKLF---------- 104 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +E + +++S D R AFL IQ+GC FC++C+VPY R S Sbjct: 105 -----------IEPQKQKVSGFD------RHSRAFLKIQDGCKSFCSYCIVPYVRSTLWS 147 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + ++V+ E + L+ +G EI L G + + G GL SDLL + +I R+R Sbjct: 148 KPENEVLSEIKNLVKSGYSEIVLTGIHTGKYDG-GL-------SDLLEKIIKIPLAFRVR 199 Query: 265 YTTSHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 ++ ++ D I+ + + + +LH+P+QSGSD ILK MNR ++ E+ + + +I Sbjct: 200 ISSVELSEIDDKFIELIETNTEKICRHLHVPLQSGSDEILKQMNRNYSTKEFEKKVSKIM 259 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + PD+A+++D I GFPGET+ + T D V +I +A+ F+YS R T S +V Sbjct: 260 RILPDLALTTDIITGFPGETEKHHKETCDFVKQILFARFHIFRYSYRQETKASTFGNKV 318 >gi|294782589|ref|ZP_06747915.1| Fe-S oxidoreductase [Fusobacterium sp. 1_1_41FAA] gi|294481230|gb|EFG29005.1| Fe-S oxidoreductase [Fusobacterium sp. 1_1_41FAA] Length = 439 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 112/371 (30%), Positives = 192/371 (51%), Gaps = 39/371 (10%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ +++ +GYE V D +D+ ++N+C + A K + L R + + Sbjct: 13 GCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI-- 70 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPELL 140 + V+V GC AQ EIL +S IVN V + Sbjct: 71 -----NPEAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS-----F 120 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 ER + G + +Y E +F L + A++ IQ+GC+ FC++C +P+ RG Sbjct: 121 EREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFARG 170 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKG 259 SR ++ E KL+++G E+ L+G +++A+ G D EK +F LL + +IK Sbjct: 171 KSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY---GEDFEKKDSFESLLEDILKIKD 227 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R + +P +SD I + + LMP+LH+ +QS D +LK+M R + + R+ + Sbjct: 228 LKRVRIGSVYPDKISDKFIDLFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSSLIRESL 286 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +++S ++ ++D IVGFP E D F+ T +++ +I ++ F+YS R GT SNM Sbjct: 287 LKLKSKVKNMEFTADVIVGFPKEDDSMFQNTRNVIKEIEFSGLHIFQYSDREGTIASNMD 346 Query: 380 EQVDENVKAER 390 +VD K +R Sbjct: 347 SKVDAKTKKQR 357 >gi|221222491|sp|O29021|Y1247_ARCFU RecName: Full=Putative methylthiotransferase AF_1247 Length = 424 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 132/447 (29%), Positives = 230/447 (51%), Gaps = 31/447 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R +++YGC N DS M F S +E ++S++DA+++++N+C + + K+ + Sbjct: 2 RVAIETYGCTTNQADSDIMRG-FLSGEFE-LSSVEDAEVVIINSCGVIDFTERKI---IR 56 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R+ +LK +EG VV+AGC+ + E + + + + P + + + A Sbjct: 57 RMLDLK----REGKK--VVLAGCLTRISKEAL----SVADSALSPDNLDMVVDAVYSALN 106 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G+++ T+ DK E + + A ++I EGC C+FC + RG S Sbjct: 107 GRKLF-TERRFIDKAEFSHL---KCRLRENAIAIVSISEGCLGKCSFCATKFARGRLRSF 162 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S+ +V EA + + G EI L Q+ A+ G+D + +LL +SEI+G R+R Sbjct: 163 SMDAIVREAERAVRAGYREIQLTSQDTGAY---GMDKGRAMLPELLRKISEIEGEFRVRV 219 Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +P+ M D LI A+ + + +LH+PVQSG +RIL+ M R HT +Y ++++ Sbjct: 220 GMMNPQHAVRMLDELINAYSS-EKIYKFLHIPVQSGDNRILEDMKRNHTVEDYVEVVEAF 278 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ D+ IS+D IVGFP ET++ F + +L+ + +YS R GTP + L + Sbjct: 279 RNSFDDVLISTDIIVGFPTETEEAFWKSYELIKETRPDIVNITRYSARKGTPAAR-LRDI 337 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 +K ER L +R+ + N VG+ + VL+ K GK G+ + R ++VV Sbjct: 338 PGWIKKERSRKLTDLMRKIGLENNKRFVGKKLRVLVTKEGK-NGRNLARMNSYRAVVTEG 396 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 +G+ ++V+I D + + L G+L Sbjct: 397 A---VGEFVEVKIKDCRFNYLIGQLAA 420 >gi|325955310|ref|YP_004238970.1| MiaB-like tRNA modifying enzyme [Weeksella virosa DSM 16922] gi|323437928|gb|ADX68392.1| MiaB-like tRNA modifying enzyme [Weeksella virosa DSM 16922] Length = 444 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 123/428 (28%), Positives = 209/428 (48%), Gaps = 17/428 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + GY++V A + V+NTC + A ++ R + Sbjct: 12 TLGCKLNFSETSTIARNLQDNGYQKVEFHQPASVYVINTCSVTANADKEC-------RTI 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + +K + VVV GC AQ + EEI V++V+G + + + L+ K+ Sbjct: 65 VKNALKANPNGFVVVVGCYAQLKPEEIASIEG-VDLVLGASEKFNIAQYLDD--LEKQDE 121 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +S E + G Y+ AFL +Q+GCD CT+C +P RGI S L V Sbjct: 122 TIIHSCE--IDEADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDELHNV 179 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLRYTT 267 + AR++ + + EI L G N+ + GKG G K TF +L+ +L E+ + R+R ++ Sbjct: 180 LKNAREIANQDIKEIVLTGVNIGDY-GKGEFGNKKHEHTFLELVEALDEVDNIERIRISS 238 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P + + I +P+ H+P+QSGSD +LK M RR+ Y+ ++ IR + P Sbjct: 239 IEPNLLKNETISFVAQSKRFVPHFHIPLQSGSDVLLKKMKRRYLTALYKDRVESIRKIMP 298 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + I D IVGFPGET++ F T + + + F YS R T + V +V+ Sbjct: 299 NACIGVDVIVGFPGETEELFMETYHFLQALPISYLHVFTYSERDNTEAIDFPGVVPYHVR 358 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447 ER L+ +++++F + +G +VL E H + GK+ G + V + + +I Sbjct: 359 KERNKRLRILSEKKRLAFYQSQLGSTQKVLWE-HENKNGKMYGFTENYVKVEADYQEESI 417 Query: 448 GDIIKVRI 455 I +V + Sbjct: 418 NQIQEVEL 425 >gi|195584188|ref|XP_002081896.1| GD25482 [Drosophila simulans] gi|194193905|gb|EDX07481.1| GD25482 [Drosophila simulans] Length = 556 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 132/467 (28%), Positives = 225/467 (48%), Gaps = 45/467 (9%) Query: 18 VDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 + + ++P Q+ FVK++GC N DS M + GY R++ ++ADL +LN+C ++ Sbjct: 62 IHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGY-RLSGKEEADLWLLNSCTVKNP 120 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTY 133 + + RN S ++ G VVVAGCV Q +S +N V+G Q Sbjct: 121 SEDT-------FRNEIKSGMQNGK--YVVVAGCVPQGAP-----KSDYLNGLSVIGVQQI 166 Query: 134 YRLPELLERARFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 R+ E++E G V + V + + + RK + ++I GC CT Sbjct: 167 DRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCT 226 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 +C + RG S +VV+ AR+ G CEI L ++ A+ G+ + + +LL Sbjct: 227 YCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAY-GRDIGS---SLPELL 282 Query: 252 YSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 + L E+ G+ Y H +++ + + +LH+PVQSGSD +L Sbjct: 283 WKLVEVIPENCMLRVGMTNPPYILEHLEEVAKVMQHPR-----VYSFLHVPVQSGSDSVL 337 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 M R + ++ ++D +R P + I++D I GFP ET+DDF TM L K + F Sbjct: 338 GEMKREYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLF 397 Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKH 421 ++ PR GTP + M E++ N+ +R K+L + S+ VG+I VL+ + Sbjct: 398 INQFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAERVGEIYTVLVTEV 452 Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +K VG + + V+L +++ +G + VRIT ++ GE++ Sbjct: 453 SHDKLHYVGHNKSYEQVLLPMRDNLLGTRVNVRITSASKFSMVGEIL 499 >gi|91205468|ref|YP_537823.1| MiaB-like tRNA modifying enzyme [Rickettsia bellii RML369-C] gi|157827173|ref|YP_001496237.1| MiaB-like tRNA modifying enzyme [Rickettsia bellii OSU 85-389] gi|91069012|gb|ABE04734.1| MiaB-like tRNA modifying enzyme [Rickettsia bellii RML369-C] gi|157802477|gb|ABV79200.1| MiaB-like tRNA modifying enzyme [Rickettsia bellii OSU 85-389] Length = 415 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 121/398 (30%), Positives = 204/398 (51%), Gaps = 37/398 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N+Y+S + + G + V V NTC + K+AEK G IR Sbjct: 10 TFGCRLNIYESEIIRKNLAASGLDNV--------AVFNTCAV-TKSAEK--QARGAIRAA 58 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERARF 145 K K DL ++V GC AQ ++ P V+ V+G + ++Y++ + Sbjct: 59 K----KNNPDLKIIVTGCSAQT-NPKMYGDMPEVDKVIGNEEKLLPSHYQIND------- 106 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 K VV+ SV++ L G +R AF+ +Q GCD CTFC++PY RG S Sbjct: 107 EKIVVNDIMSVKETANHLISSFDGKSR-----AFIQVQNGCDHNCTFCIIPYGRGRNRSI 161 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLR 264 ++ + ++ + L+ NG E+ G +V A+ G L G TF+ ++ L+ + L RLR Sbjct: 162 AIGAIAEQVKHLVLNGFKEVVFTGVDVTAY-GGDLPGSP-TFAQMIKRVLNLVPELKRLR 219 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ ++ D L + + +MP+ H+ +Q+G D ILK M RRH E + +++R+ Sbjct: 220 LSSIDVAEIDDELFELLAYNERIMPHFHISLQAGDDMILKRMKRRHNRAEIIEFCNKLRA 279 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +RP+++ +D I GFP ET + F T L+ + F YS R GTP + M QV + Sbjct: 280 IRPEVSFGADIIAGFPTETPEMFENTRKLIAEAELQYLHVFPYSEREGTPAARM-PQVPK 338 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 ++ ER L+++ + Q F +GQ +E+L+E + Sbjct: 339 AIRKERAEILRQEGQRQLAEFFKKHIGQKVELLVENNN 376 >gi|187250673|ref|YP_001875155.1| MiaB family RNA modification enzyme [Elusimicrobium minutum Pei191] gi|238065353|sp|B2KB59|RIMO_ELUMP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|186970833|gb|ACC97818.1| RNA modification enzyme, MiaB family [Elusimicrobium minutum Pei191] Length = 430 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 126/445 (28%), Positives = 217/445 (48%), Gaps = 19/445 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F S GC N+ D+ M + + + V +AD I++NTC + A E+ + Sbjct: 3 KIFTISLGCSKNLTDTEEMLGILNHKKHYLVADESEADTILINTCAFIKPAREEADREIK 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R LK +G ++VAGC+ Q EG+ + + P+V+ +G + ++ +++R + Sbjct: 63 RASKLK----AQGKIEKLIVAGCLTQKEGKSLPSKYPLVDAFIGLKGIEKIDNVIKRPK- 117 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +S + + D +A+L + +GC+ C +C +P RG S+ Sbjct: 118 --------HSFCPAPDYIKAPDFKLQLTAPHSAYLKVADGCNNRCAYCTIPAIRGPFRSK 169 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S+ +V EA+ + NGV EI+L+ Q+ A+ G+ + G K + LL L +IKG+ R Sbjct: 170 SMEDIVAEAKAMEKNGVKEISLIAQDTTAY-GQDIFG-KPSLVKLLKKLVKIKGIEWFRI 227 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P ++ L+ + YL +P+Q S +LK+MNRR T E R I IR + Sbjct: 228 MYAYPETVTKDLLDFIACEPKICRYLDMPLQHISAPVLKAMNRRSTEDEVRAKIKLIRQI 287 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P +++ ++FI GFPGET +DF + + + F YS GTP + M QV E Sbjct: 288 VPGMSLRTNFIAGFPGETAEDFEKLKKFIAEAKFNNVGVFAYSKEDGTPAAVMKRQVAEK 347 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS--VVLNSK 443 +K +R+ L S N G+ ++VL++ G+ SP + V +K Sbjct: 348 IKKQRVEELVSAQSRVIDSINRKLKGKTVKVLLDNLF--CGRSESDSPDIDGRVEVKGNK 405 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 + GD +KV+IT K G+++ Sbjct: 406 KYKAGDFVKVKITSAKGYNRTGKII 430 >gi|114320655|ref|YP_742338.1| MiaB-like tRNA modifying enzyme YliG [Alkalilimnicola ehrlichii MLHE-1] gi|122311674|sp|Q0A8I9|RIMO_ALHEH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|114227049|gb|ABI56848.1| SSU ribosomal protein S12P methylthiotransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 443 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 138/465 (29%), Positives = 214/465 (46%), Gaps = 51/465 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V ++AD++V+NTC E A + Sbjct: 10 PRVGFV-SLGCPKALVDSERILTQLRVEGYEIVGGYEEADVVVVNTCAFIEAAQAESLDA 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + E G VVV GC+ +G+ I P V + GPQ Y A Sbjct: 69 IGEA-------LDENGK--VVVTGCLG-TKGDLIRETHPGVLAITGPQDY--------EA 110 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 D F L G R A+L I EGC+ CTFC++P RG + Sbjct: 111 VMAAVHAQCPPPARDAFTGLLPASGVKLTPRHY-AYLKISEGCNHHCTFCIIPQLRGRLV 169 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + QV+ EA +L+ +GV E+ ++ Q+ +A WRG + ++L Sbjct: 170 SRPVDQVLAEAERLVGDGVRELLVISQDTSAYGVDTRYAAAEWRGVP---RRTRMTELAD 226 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +L+E+ VRL Y +P + A G + PYL +P+Q S RILK+M R Sbjct: 227 ALAELGVWVRLHYVYPYPHVDELIPLMAEGRI---APYLDMPLQHASPRILKAMRRPAGG 283 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I R R PD+ + S FIVGFPGET+DDF+ ++ ++ + F YSP G Sbjct: 284 EAVLERIRRWRQRCPDLTLRSTFIVGFPGETEDDFQVLLEFLEAAELDRVGCFTYSPVEG 343 Query: 373 TPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 + + + V E + + RL+ LQ ++ ++++ VG VL++ + V Sbjct: 344 AAANALADPVPEAIAEQRQARLMALQAEISARRLARR---VGTECTVLLD--AVDGDAAV 398 Query: 430 GRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGELV 468 GRS P + V+ ++ G + R+ D LYG ++ Sbjct: 399 GRSQLEAPEVDGVIHLRGAEGCAPGQWVPARLEDADEHDLYGRVL 443 >gi|294643379|ref|ZP_06721198.1| RNA modification enzyme, MiaB family [Bacteroides ovatus SD CC 2a] gi|292641257|gb|EFF59456.1| RNA modification enzyme, MiaB family [Bacteroides ovatus SD CC 2a] Length = 243 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 98/244 (40%), Positives = 143/244 (58%), Gaps = 8/244 (3%) Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287 +GQNVN++R + GE TF LL +++E VR+R+TTSHP+DMSD ++ + + Sbjct: 1 MGQNVNSYRFERPTGEVVTFPMLLRTVAEAAPGVRIRFTTSHPKDMSDETLEVIAQVPNV 60 Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347 ++HLPVQSGS RILK MNR++T Y + I+ + PD +++D GF ET+ D Sbjct: 61 CKHIHLPVQSGSSRILKLMNRKYTREWYLDRVAAIKRIIPDCGLTTDIFSGFHSETEKDH 120 Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERL---LCLQKKLREQQV 403 ++ L++ GY AF FKYS R GT S LE V E VK RL + LQ +L + Sbjct: 121 AMSLSLMEACGYDAAFMFKYSERPGTYASKHLEDNVPEEVKVRRLNEIIALQNRLSAES- 179 Query: 404 SFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIST 462 N C+G+ EVL+E K + +L GR+ + VV + H +GD + VR+T+ +T Sbjct: 180 --NQRCIGKTYEVLVEGVSKRSRDQLFGRTEQNRVVVFDRGTHRVGDFVNVRVTEASSAT 237 Query: 463 LYGE 466 L GE Sbjct: 238 LKGE 241 >gi|19922432|ref|NP_611207.1| CG6550 [Drosophila melanogaster] gi|122087244|sp|Q7K4W1|CDKAL_DROME RecName: Full=CDKAL1-like protein gi|7302795|gb|AAF57870.1| CG6550 [Drosophila melanogaster] gi|15291579|gb|AAK93058.1| GH28477p [Drosophila melanogaster] gi|220945770|gb|ACL85428.1| CG6550-PA [synthetic construct] Length = 552 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 132/467 (28%), Positives = 226/467 (48%), Gaps = 45/467 (9%) Query: 18 VDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 + + ++P Q+ FVK++GC N DS M + GY R++ ++ADL +LN+C ++ Sbjct: 62 IHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGY-RLSGKEEADLWLLNSCTVKNP 120 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTY 133 + + RN S ++ G VVVAGCV Q +S +N V+G Q Sbjct: 121 SEDT-------FRNEIESGMRNGKH--VVVAGCVPQGAP-----KSDYLNGLSVIGVQQI 166 Query: 134 YRLPELLERARFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 R+ E++E G V + V + + + RK + ++I GC CT Sbjct: 167 DRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCT 226 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 +C + RG S +VV+ AR+ G CEI L ++ A+ G+ + + +LL Sbjct: 227 YCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAY-GRDIGS---SLPELL 282 Query: 252 YSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 + L E+ G+ Y H ++++ L + +LH+PVQSGSD +L Sbjct: 283 WQLVEVIPEHCMLRVGMTNPPYILEHLEEVANVLQHPR-----VYSFLHVPVQSGSDSVL 337 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 M R + ++ ++D +R P + I++D I GFP ET+DDF TM L K + F Sbjct: 338 GEMKREYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLF 397 Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKH 421 ++ PR GTP + M +++ N+ +R K+L + S+ VG+I VL+ + Sbjct: 398 INQFFPRPGTPAAKM-DRIPANLVKKR----TKRLTDLFYSYEPYADRVGEIYTVLVTEV 452 Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +K VG + + V+L +++ +G + VRIT ++ GE++ Sbjct: 453 SHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEIL 499 >gi|118086360|ref|XP_418914.2| PREDICTED: similar to CDK5 regulatory subunit associated protein 1-like 1 [Gallus gallus] Length = 583 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 131/458 (28%), Positives = 222/458 (48%), Gaps = 42/458 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ ++ +ADL +LN+C ++ A + F Sbjct: 62 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAEADLWLLNSCTVKNPAED---HFR 118 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + + K VV+AGCV QA+ + + ++G Q R+ E++E Sbjct: 119 NSIKKAQEANKK------VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 169 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V +D +RL + +D RK + ++I GC CT+C + RG Sbjct: 170 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDL 228 Query: 203 ISRSLSQVVDEARK-LIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI--- 257 S + ++VD A++ D GVCEI L ++ A+ R G D LL+ L E Sbjct: 229 ASYPIEELVDRAKQSFQDEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEAIPE 283 Query: 258 -----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 G+ Y H +M+ L + + +LH+PVQS SD +L M R + Sbjct: 284 GAMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMDMKREYCV 338 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 ++R+++D ++ P I I++D I GFPGETD+DF+ TM LV++ + F ++ PR G Sbjct: 339 ADFRRVVDFLKEKVPGITIATDIICGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPG 398 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVG 430 TP + M QV VK +R K L + S+N D VG+ VL+ + + V Sbjct: 399 TPAAKM-HQVPAAVKKQR----TKDLSQLFHSYNPYDHKVGERQRVLVTEESFDSNYYVA 453 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +P+ + V++ +G +++V I + + G+ V Sbjct: 454 HNPFYEQVLVPKDPALMGKMVEVNIYEAGKHFMKGQPV 491 >gi|319409457|emb|CBI83106.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 427 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 126/395 (31%), Positives = 196/395 (49%), Gaps = 24/395 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S + + S G +++ D I+ NTC + AE V IR Sbjct: 7 TFGCRLNSYESEVIREKSASAGLDKLK----GDAIIFNTCAV---TAEAVRQAKQAIRKA 59 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K +E +VV GC AQ E E + V++V+G + + FG Sbjct: 60 K----RENPHARIVVTGCAAQTEAENFALMTE-VDLVLGNEEKLHTHSYRQFPDFGINH- 113 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 D V D E +I G T F+ +Q GCD CTFC++PY+RG S + Sbjct: 114 DEKLRVNDIMEVRNIAPHMVGAIEGRTRVFVQVQNGCDHRCTFCIIPYSRGPSRSVPMGT 173 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRYTTS 268 ++++ +K I NGV EI L G ++ ++ G L G K + L+ + L + L RLR ++ Sbjct: 174 IIEQIKKFIGNGVQEIVLTGVDLTSY-GADLPG-KASLGKLVSAILHHVPDLPRLRLSSI 231 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++ LI +MPYLHL +Q+GS+ ILK M RRH Q +R+ RP Sbjct: 232 DSIEIDQELIDLLAYEKRIMPYLHLSLQAGSNMILKRMKRRHLRENAIQFCQDLRAKRPT 291 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV-- 386 + +D I GFP ET++ F+ ++ L+D+ F +SPR GTP + M QV+ + Sbjct: 292 MVYGADLIAGFPTETEEMFQNSLALIDECNLTHLHVFPFSPREGTPAARM-PQVNREIIK 350 Query: 387 -KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 +AE+L KK ++ +S + QII L+EK Sbjct: 351 TRAEKLRNAGKKAYQKHLSHSKN-TQQII--LVEK 382 >gi|262068261|ref|ZP_06027873.1| Fe-S oxidoreductase [Fusobacterium periodonticum ATCC 33693] gi|291377999|gb|EFE85517.1| Fe-S oxidoreductase [Fusobacterium periodonticum ATCC 33693] Length = 439 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 124/447 (27%), Positives = 227/447 (50%), Gaps = 40/447 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N Y++ +++ +GYE V +D+ ++N+C + A K + L R + + Sbjct: 13 GCKVNQYETESIKNQLIKRGYEEVPFDHKSDIYIINSCTVTSIADRKTRNMLRRAKKI-- 70 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPELL 140 + V++ GC AQ EIL +S IVN V + Sbjct: 71 -----NPEAKVIITGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS-----F 120 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 ER + G + +Y E +F L + A++ IQ+GC+ FC++C +P+ RG Sbjct: 121 EREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFARG 170 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR ++ E KL+++G E+ L+G +++A+ G+ + EK +F LL + +IK L Sbjct: 171 KSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAY-GEDFE-EKDSFESLLEDILKIKDL 228 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + +P ++D I + + LMP+LH+ +QS D +LK+M R + + R+ + Sbjct: 229 KRVRIGSVYPDKITDKFIDLFKNKN-LMPHLHISLQSCDDTVLKNMRRNYGSSLIRESLL 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +++S ++ ++D IVGFP E D F+ T +++ +I ++ F+YS R GT SNM Sbjct: 288 KLKSKVKNMEFTADVIVGFPKEDDSMFQNTRNVIKEIEFSGLHIFQYSDREGTIASNMDG 347 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 +VD K +R L + +E + + +G++ + + +++G+ G S V Sbjct: 348 KVDAKTKKQRADSLDQLKQEMILESREKYLGKV--LEVLVEEEKEGEYFGYSQNYMRVKF 405 Query: 441 NSKNHN-IGDIIKVRITDVKISTLYGE 466 S+ N I ++I V+I ++ L GE Sbjct: 406 KSEEKNLINELINVKIKSIENDILIGE 432 >gi|85704067|ref|ZP_01035170.1| MiaB-like tRNA modifying enzyme [Roseovarius sp. 217] gi|85671387|gb|EAQ26245.1| MiaB-like tRNA modifying enzyme [Roseovarius sp. 217] Length = 423 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 127/439 (28%), Positives = 211/439 (48%), Gaps = 51/439 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ G +D+A +++NTC + +A K + R+R Sbjct: 13 TLGCRLNAYETEAMKELAGQAG------LDNA--VIVNTCAVTSEAVRKARQEIRRLR-- 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPE--LLER 142 +E + ++V GC AQ E E P V+ V+G P T+ RL + E Sbjct: 63 -----RENPEARLIVTGCAAQTE-PETFAAMPEVDAVIGNTEKMSPATWGRLAGDFIGET 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R +VD SV + L +DG +R R A++ +Q GCD CTFC++P+ RG Sbjct: 117 ERV---LVDDIMSVRETAGHL--IDGFGSRSR---AYVQVQNGCDHRCTFCIIPFGRGNS 168 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S VV++ ++L+ G E+ L G ++ +W G L ++ L + L R Sbjct: 169 RSVPAGVVVEQIKRLVGAGYNEVVLTGVDLTSW-GADLPATPKLGDLVMRILRLVPDLPR 227 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ + L++A LMP+LHL +Q G D ILK M RRH + + + Sbjct: 228 LRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLREDAIRFAEEA 287 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RP++ +D I GFP ET+ F ++ LV+ F YSPR GTP + M QV Sbjct: 288 RRLRPEMTFGADIIAGFPTETEAHFENSLRLVEDCHLTWLHVFPYSPRPGTPAARM-PQV 346 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-----VGRSPWLQS 437 + + ++++ A ++ L +HG+E L +GR+ Sbjct: 347 N-----------GRSIKDRAARLRAAGEARVAAHLAAQHGREHAVLMEAPRMGRTEQFTE 395 Query: 438 VVLNSKNHNIGDIIKVRIT 456 VV +S G I++ R+T Sbjct: 396 VVFDSDRPE-GQIVRARVT 413 >gi|159185331|ref|NP_355629.2| hypothetical protein Atu2694 [Agrobacterium tumefaciens str. C58] gi|159140586|gb|AAK88414.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 424 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 120/400 (30%), Positives = 187/400 (46%), Gaps = 30/400 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M G + +++NTC + +A + Sbjct: 6 VITFGCRLNTYESEVMRAEAEKAGLN--------NAVLVNTCAVTGEAVRQARQ------ 51 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142 ++ ++V GC AQ E ++ P V+ V+G + +Y LP+ Sbjct: 52 -AIRRARRDNPHARIIVTGCAAQTE-KQTFADMPEVDAVLGNEEKLKSASYRALPDFGVS 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A RV D + + +DG V AF+ +Q GCD CTFC++PY RG Sbjct: 110 AEEKLRVNDIMSIKATAPQMVKHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + VVD+AR+L ++G CEI L G + ++ G L GE L ++ ++R Sbjct: 164 RSVPMGAVVDQARRLTESGYCEIVLTGVDATSY-GADLPGEPSLGYLAKTLLKQVPDIIR 222 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ + L+ D MP+LHL +Q G D ILK M RRH + + + + Sbjct: 223 LRLSSIDSIEADHHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHLRADAIRFCNEV 282 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RS+RPDIA +D I GFP ET++ L ++ G + F YSPR GTP M Q+ Sbjct: 283 RSLRPDIAFGADMIAGFPTETEEMLENAATLAEECGISSLHVFPYSPREGTPAVRM-PQL 341 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 D + ER L+ + + + VG + VL+E G Sbjct: 342 DRALVKERAGRLRARGEALKQAHLQNMVGSVQTVLVENSG 381 >gi|87310727|ref|ZP_01092854.1| hypothetical protein DSM3645_06861 [Blastopirellula marina DSM 3645] gi|87286484|gb|EAQ78391.1| hypothetical protein DSM3645_06861 [Blastopirellula marina DSM 3645] Length = 432 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 128/450 (28%), Positives = 219/450 (48%), Gaps = 43/450 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + + + GY + + ADL ++NTC + + K + R+ Sbjct: 14 TLGCKVNQYETELVREGLVTAGYRDAITEEPADLCIVNTCTVTNEGDSKSRQVIRRL--- 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ D +VV GC A E+ +V VV + +P+LL RFG V Sbjct: 71 ----ARDNPDARIVVMGCYATRAPAELAVLPNVVEVV---ENKREIPDLL--GRFGVIDV 121 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 T S R AF+ +Q+GC CTFC++P R SRS ++ Sbjct: 122 PTGLSTFGDRHR---------------AFVKVQDGCLLRCTFCIIPTVRPEMYSRSSEEI 166 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + E +L DNG EI L G ++ + RGK E + L+ SL+ + G R+R Sbjct: 167 IAEVARLADNGFREIVLTGIHLGHYGVDQNRGKS-KAEWMRLAHLVRSLARLDGDFRIRM 225 Query: 266 TTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ +++ LI+ G+ D + P+LH+ +QSGSD +L+ M RR A + +DR + Sbjct: 226 SSIEATEVTRELIEVMGEFPDRVCPHLHISMQSGSDSVLRRMRRRWGAQRF---VDRCKL 282 Query: 325 VRPDI---AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 ++ + AIS+D IVGFPGET+ +F T + ++G+++ F +SPR GTP + M + Sbjct: 283 LQTSLDQPAISTDIIVGFPGETEAEFEETCAVSREVGFSKIHIFPFSPRKGTPAAEMPDH 342 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLV--GRSPWLQSV 438 + +VK++R L + + D+ VG+ +EVL E E G+ + G + V Sbjct: 343 IPGDVKSDRRRRLADVEAASRQIYFDSLVGRQLEVLGESSETDESGRALVRGTACRYAPV 402 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++G++ +V + + L L Sbjct: 403 TFEGAAGDVGNLRRVLVKSAQADHLIATLT 432 >gi|226945811|ref|YP_002800884.1| ribosomal protein S12 methylthiotransferase [Azotobacter vinelandii DJ] gi|226720738|gb|ACO79909.1| Ribosomal protein S12 methylthiotransferase [Azotobacter vinelandii DJ] Length = 440 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 144/461 (31%), Positives = 217/461 (47%), Gaps = 59/461 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC DS R+ ++GY V S ++AD++V+NTC + A + +G Sbjct: 12 SLGCPKATVDSERILTQLRTEGYRIVPSYEEADVVVVNTCGFIDSAKAESLDAIGEA--- 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + E G V+V GC+ +E E I P V V GPQ Y E+ V Sbjct: 69 ----LAENGK--VIVTGCMGVSE-EAIRNVHPSVLAVTGPQQY-------EQVVSAVHEV 114 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + D F L G R A+L I EGC+ C FC++P RG +SR +V Sbjct: 115 APPKADHDPFVDLVPPQGIRLTPRHY-AYLKISEGCNHSCAFCIIPSMRGKLVSRPAGEV 173 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA +L+ GV E+ ++ Q+ +A W G+ + K +L L + Sbjct: 174 LGEAERLVGAGVQELLVIAQDTSAYGVDLRYRTDFWNGRPV---KTRLLELCEELGRMGV 230 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G ++PYL +P+Q S +ILK+M R A+E Q + Sbjct: 231 WVRLHYVYPYPSVDELIPLMAAGK---ILPYLDIPLQHASPKILKAMKR--PAFE-DQTL 284 Query: 320 DRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 RIR R P++ I S FIVGFPGET++DF+ +D + + + F+YS G P + Sbjct: 285 ARIRKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLSEAQLDRVGCFQYSAVDGAPAN 344 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGKEKGKLVGRS 432 + V E VK ER ++ Q + + A +GQ IEVLI++ E+G VGRS Sbjct: 345 ELEGAVAEEVKQERW----ERFMAHQQAISAARLQRRIGQEIEVLIDEV-DEQGA-VGRS 398 Query: 433 PWLQSVVLNSKNH-------NIGDIIKVRITDVKISTLYGE 466 W + ++ + GD ++VR+TD L+ E Sbjct: 399 -WADAPEIDGNVYVDSAQVLKPGDKVRVRVTDADEYDLWAE 438 >gi|269139615|ref|YP_003296316.1| Fe-S oxidoreductase [Edwardsiella tarda EIB202] gi|267985276|gb|ACY85105.1| Fe-S oxidoreductase [Edwardsiella tarda EIB202] gi|304559491|gb|ADM42155.1| Ribosomal protein S12p Asp88 methylthiotransferase [Edwardsiella tarda FL6-60] Length = 441 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 129/456 (28%), Positives = 219/456 (48%), Gaps = 46/456 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY V + +DADL+++NTC + A ++ +G Sbjct: 14 SLGCPKNLVDSERILTELRTEGYLVVPTYEDADLVIVNTCGFIDSAVQESLEAIGEA--- 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + E G V+V GC+ E + I P V + GP +Y ++ K V Sbjct: 71 ----LHENGK--VIVTGCLGAKENQ-IREVHPKVLEISGPHSYEQV-----LHHVHKYVA 118 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + + F L + + G A+L I EGC+ C FC++P RG SR + V Sbjct: 119 KPQH---NPFTSL-VPEQGVKLTPKHFAYLKISEGCNHRCAFCIIPSLRGDLESRPIGAV 174 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 +DEA++L D+GV E+ ++ Q+ +A W G+ + K + L L+ + Sbjct: 175 LDEAKRLADSGVRELLVISQDTSAYGADIQHRTGFWNGQPV---KTSMLSLCEQLATLGI 231 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +RL Y +P + A G L +PYL +P+Q S RILK M R + I Sbjct: 232 WIRLHYVYPYPHVDDVIPLMAQGKL---LPYLDIPLQHASPRILKLMKRPGAVERTLERI 288 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R R + P + + S FIVGFPGET++DF+ +D + + + F+YSP + + Sbjct: 289 KRWREICPQLTLRSTFIVGFPGETEEDFQMLLDFLREARLDRVGCFQYSPVESAAANELP 348 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 +QV + +K +R + LQ+++ +++ VG + V+I++ +E G+ + +P Sbjct: 349 DQVPDEIKQARFDRFMQLQQQISAERLQEK---VGLTLPVIIDEVDEEGAIGRSMADAPE 405 Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + VV + + GDI+ V I + ++G L Sbjct: 406 IDGVVYLNGERGVKPGDIVSVTIENADEYDMWGTLA 441 >gi|254486731|ref|ZP_05099936.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. GAI101] gi|214043600|gb|EEB84238.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. GAI101] Length = 418 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 130/440 (29%), Positives = 204/440 (46%), Gaps = 39/440 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y++ M+D+ G E + +++NTC + +A K + ++R Sbjct: 8 NHGCRLNAYETEAMKDLAQQAGLE--------NAVIINTCAVTAEAVRKARQDIRKLRKA 59 Query: 91 K-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV------VGPQTYYRLPELLERA 143 N+R+ +V GC AQ E E + + + V+ VG + + + Sbjct: 60 NPNARL--------IVTGCAAQTEPETFAKMAEVDAVIGNTEKMVGATWQGLAADFIGES 111 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + VD SV + L +DG R R A++ +Q GCD CTFC++PY RG Sbjct: 112 EAVQ--VDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSR 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S VVD+ ++L+D G E+ L G ++ +W G L E ++ L + L RL Sbjct: 165 SVPAGVVVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPSEPKLGDLVMRILRLVPDLPRL 223 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ ++ D L+KA LMP+LHL +Q G D ILK M RRH + + + R Sbjct: 224 RISSIDSIEVDDNLMKAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFSEEAR 283 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +RPD+ +D I GFP ETD F ++ LV F YS R GTP + M V Sbjct: 284 KLRPDMTFGADIIAGFPTETDAMFENSLKLVQDCDLTWLHVFPYSARQGTPAARM-PAVQ 342 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + ER L+ Q DA G++ +VL+E +GR+ + Sbjct: 343 GGLIKERAAQLRAAGDRQVARHLDAQQGRMHDVLMES------PTMGRTAQFTETHFTAP 396 Query: 444 NHNIGDIIKVRITDVKISTL 463 G II+ RIT + + L Sbjct: 397 QTE-GAIIRARITGQEATHL 415 >gi|88608641|ref|YP_506660.1| MiaB family tRNA modification protein [Neorickettsia sennetsu str. Miyayama] gi|88600810|gb|ABD46278.1| tRNA modification enzyme, MiaB family [Neorickettsia sennetsu str. Miyayama] Length = 429 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 135/460 (29%), Positives = 214/460 (46%), Gaps = 58/460 (12%) Query: 25 QRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +F VK ++GC++N Y+S ++++ V D + I++NTC + +A +V Sbjct: 11 NKFMVKVITFGCRLNFYESDLIKNL--------VGIRDSRECIIINTCAVTNEAVRQVKQ 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +IR K+ ++V GC Q + P Y R+P + + Sbjct: 63 ---KIRKCH----KDEPSKKIIVVGCGPQLD----------------PHAYSRMPGVFKV 99 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYN-------------RKRGVTAFLTIQEGCDKF 189 +++ +Y+ E K I D RKR AFL IQ GCD Sbjct: 100 LGNVEKLKAENYASEQKIAVADITDASETAFSSTMMPVVSAVRKR---AFLEIQNGCDHD 156 Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249 CTFC + RG S +V E RK++ G+ E+ L G ++ + GK L G+ Sbjct: 157 CTFCAITLARGKNRSSDAMTIVSEVRKIVAFGINEVVLTGVDITDY-GKDLFGKPALVYL 215 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 L L+++ L RLR ++ ++SD I+ LMP+LHL +QSG ILK M RR Sbjct: 216 LKKILNDVPELKRLRLSSVDVSELSDDFIELFATEARLMPHLHLSIQSGDSIILKRMKRR 275 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 HT + + +I +VRP+ +D IVGFP E+++ F + +L+ ++ F +SP Sbjct: 276 HTPEQVVEFHSKILAVRPETGFGADIIVGFPTESEEMFHNSYELIKRLAIPYLHVFPFSP 335 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 + GT + ++ QVD VK R L K +E FN VG I +++E+ V Sbjct: 336 KKGTKAA-LMPQVDGVVKKGRARKLIKLGKENLQIFNTMQVGSIHNLVLERDN------V 388 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVK-ISTLYGELV 468 GRS V L S + II+ +IT TL G+++ Sbjct: 389 GRSENFCLVRLGSAVSDDTGIIRAKITGCSDAETLSGQII 428 >gi|291531886|emb|CBK97471.1| SSU ribosomal protein S12P methylthiotransferase [Eubacterium siraeum 70/3] Length = 446 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 124/450 (27%), Positives = 213/450 (47%), Gaps = 26/450 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D+ M G++ VN AD++++NTC + A E+ + + Sbjct: 11 SLGCPKNQCDAELMLAKIAKAGFKIVNEAGLADVVIINTCGFIQSAKEEAIEEIMEAISR 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 KN I + ++V GC+A+ +++ P ++ VVG + E++ +RVV Sbjct: 71 KNDGINKK----IIVTGCLAERYQKQMDEEFPEIDAVVGIAKNDDIVEIINSVMLDRRVV 126 Query: 151 DTDYSVEDKFE--RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + E +L Y A+L I +GC C++C +P RG SR + Sbjct: 127 TFGDKLCHNMEGDKLQSTLPHY-------AYLRIADGCSNKCSYCAIPLIRGKMRSRKME 179 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 +++EA+K +NGV E+ ++ Q+V A+ G+D +K DLL L +I G+ +R Sbjct: 180 NIIEEAKKFAENGVKELVIVAQDVTAY---GIDLYKKYALPDLLKELCKIDGIKWIRLLY 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P M+D LI+ D ++ Y+ +P+Q + IL++M R R++ ++R P Sbjct: 237 CYPERMTDELIETIKTEDKVLNYIDIPIQHCNKEILRNMYRGGDEQSLRELFAKLRREIP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + + + I GFPGET++ F + V+ I + + F YS TP + M +QVDE + Sbjct: 297 GVVLRTTLITGFPGETEEQFSELAEFVNDIKFERLGCFAYSAEEDTPAAEMPDQVDEGER 356 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL--- 440 R + + + + VG EV+ E + GRS P + ++ Sbjct: 357 QRRADIITSEQEIRMGEYYAGMVGNTYEVVCEGFDRYSDMYFGRSMHFAPEIDGMIYFTS 416 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IGD + V+ITDV + L GE V Sbjct: 417 AKDKSSLTIGDFVNVKITDVLENNLLGERV 446 >gi|315225262|ref|ZP_07867079.1| MiaB family RNA modification enzyme [Capnocytophaga ochracea F0287] gi|314944945|gb|EFS96977.1| MiaB family RNA modification enzyme [Capnocytophaga ochracea F0287] Length = 433 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 139/452 (30%), Positives = 220/452 (48%), Gaps = 47/452 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87 V + GC NVYDS + + G E V+ +++V+NTC I E + + L + Sbjct: 13 VVTLGCSKNVYDSEVLMGQLKAGGKEVVHEQK-GNIVVINTCGFINNAKEESINTILDYV 71 Query: 88 RNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + KE G + V V GC+++ ++ + P V+ G LP LL Sbjct: 72 QQ------KEAGLVDKVFVMGCLSERYKPDLEKEIPDVDQYFGTS---ELPALL------ 116 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +V+ DY E ERL+ Y A+L I EGCD+ C+FC +P RG +S Sbjct: 117 -KVLGADYKHELIGERLTTTPKNY-------AYLKISEGCDRPCSFCAIPLMRGAHLSTP 168 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRL 263 + +V EA KL GV E+ L+ Q++ + GLD +K +DLL +L +++G+ +R+ Sbjct: 169 IEALVTEAEKLAAKGVKELILIAQDITYY---GLDLYKKRALADLLSALVKVEGIEWIRI 225 Query: 264 RYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 Y T P D+ + +IK + YL +P+Q SD IL SM R T + +++ + Sbjct: 226 HYAFPTGFPMDVLE-VIKTEPKI---CNYLDIPLQHISDSILASMKRGTTQAKTTKLLKK 281 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R P++AI + IVG+PGET++DF+ D V ++ + + F YS T + + Sbjct: 282 FREAIPEMAIRTTLIVGYPGETEEDFQKLKDFVKEMRFDRLGCFTYSHEENTTAYTLEDD 341 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW-----LQ 436 V E VK R + + + N VG+ LI++ KE VGR+ + Sbjct: 342 VQEEVKLARANEIMEIQSQISWELNQEKVGKSFRCLIDR--KEGNYFVGRTEYDSPDVDN 399 Query: 437 SVVLNSKNH--NIGDIIKVRITDVKISTLYGE 466 V++++K H IGD V+I D LYGE Sbjct: 400 EVLIDAKKHYVKIGDFTDVKIIDATDYDLYGE 431 >gi|262195718|ref|YP_003266927.1| MiaB-like tRNA modifying enzyme YliG [Haliangium ochraceum DSM 14365] gi|262079065|gb|ACY15034.1| MiaB-like tRNA modifying enzyme YliG [Haliangium ochraceum DSM 14365] Length = 486 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 135/461 (29%), Positives = 221/461 (47%), Gaps = 35/461 (7%) Query: 21 CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 + P++ F S GC N D+ M GY V D+AD+IV+NTC E A E+ Sbjct: 20 AVAPRKVFFVSLGCPKNRVDTEVMLGHAGGAGYRIVAEPDEADVIVVNTCGFIEAAKEES 79 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 + L+ + K+ +VV GC++Q EE+ P ++ ++G + +L L Sbjct: 80 VDTI-----LEMAEYKKQNCEALVVTGCLSQRYPEELAAEIPEIDHLLGSADFRQLNSAL 134 Query: 141 ERARFGK------RVVDTDYSVEDKFERLS-IVDGGYNRKRG---VTAFLTIQEGCDKFC 190 A K R + V E S + D R R +A+L I EGCD+ C Sbjct: 135 GSALSAKAGASPARPARSSLPVIQVSETPSDLYDHTTPRMRSGALHSAYLKIAEGCDRPC 194 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG---KGLDGEKCTF 247 +FC++P RG + SRS+ VV E L+ G EI L+ Q++ + G DG + Sbjct: 195 SFCIIPKLRGPQRSRSIDSVVAETEALVAGGAREINLIAQDLTRYGADLPAGPDG-RPNL 253 Query: 248 SDLLYSLSEIKGL--VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 + LL ++ + G+ VRL YT +P +D LI+ + ++ Y+ +P+Q D +LK Sbjct: 254 AGLLRRVARVPGVRWVRLHYT--YPSAFTDELIEVIAEEPTVVKYIDVPLQHIDDEMLKR 311 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R H+A +++ ++R + + + FIVG PGETD+ F +D V + + + +F Sbjct: 312 MRRGHSARVTHELVAKLRQRIDGLVLRTTFIVGHPGETDESFGRLLDFVRETRFERVGAF 371 Query: 366 KYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 YS GT + +V V R L+ LQ ++ + N + + IEVL++ Sbjct: 372 TYSIEPGTVSGMLPNRVPPEVAEARRDELMALQSEIHR---AHNQTLIDREIEVLVDGIS 428 Query: 423 KE-----KGKLVGRSPWLQ-SVVLNSKNHNIGDIIKVRITD 457 E +G+ G++P + SV L GDI++ +TD Sbjct: 429 DESDLLLQGRWYGQAPEIDGSVYLADGTAQPGDIVRAVVTD 469 >gi|194755317|ref|XP_001959938.1| GF11786 [Drosophila ananassae] gi|190621236|gb|EDV36760.1| GF11786 [Drosophila ananassae] Length = 557 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 133/467 (28%), Positives = 224/467 (47%), Gaps = 45/467 (9%) Query: 18 VDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 + + ++P Q+ FVK++GC N DS M + GY +++ +DADL +LN+C ++ Sbjct: 64 IHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGY-KLSGKEDADLWLLNSCTVKNP 122 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTY 133 + + RN S +K G VVVAGCV Q +S +N V+G Q Sbjct: 123 SEDT-------FRNEIESGMKNGKH--VVVAGCVPQGAP-----KSDYLNGLSVIGVQQI 168 Query: 134 YRLPELLERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 R+ E++E G R++ V + + + RK + ++I GC CT Sbjct: 169 DRVVEVVEETLKGHSVRLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCT 228 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 +C + RG S +VV+ AR+ G CEI L ++ A+ G+ + + +LL Sbjct: 229 YCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAY-GRDIGS---SLPELL 284 Query: 252 YSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 + L E+ G+ Y H +++ L + +LH+PVQSGSD +L Sbjct: 285 WKLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYAFLHVPVQSGSDSVL 339 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 M R + ++ ++D +R P + I++D I GFP ET+ DF TM L K + F Sbjct: 340 GEMKREYCRKDFEHVVDFLRERVPGVTIATDIICGFPTETEADFEETMTLCAKYRFPSLF 399 Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKH 421 ++ PR GTP + M E++ N+ +R K+L + ++ VGQI VL+ + Sbjct: 400 INQFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYTYEPYSGRVGQIYTVLVTEI 454 Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +K VG + + V+L + + +G + VRIT ++ GE++ Sbjct: 455 SHDKLHYVGHNKSYEQVLLPMRENLLGTRVHVRITSASKFSMVGEIL 501 >gi|158523241|ref|YP_001531111.1| MiaB-like tRNA modifying enzyme YliG [Desulfococcus oleovorans Hxd3] gi|238065334|sp|A9A0B5|RIMO_DESOH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|158512067|gb|ABW69034.1| MiaB-like tRNA modifying enzyme YliG [Desulfococcus oleovorans Hxd3] Length = 440 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 130/462 (28%), Positives = 210/462 (45%), Gaps = 46/462 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + + S GC N DS M F ++G + AD++V+NTC E A + + Sbjct: 2 KVHLTSLGCAKNQVDSELMLGAFAAEGLTVCDDPAGADVLVVNTCAFIEDAVNEAVDTIL 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + K+ EG ++V GC+ + GEE+ P + G Y+R+ E + Sbjct: 62 ALARYKS----EGSCRRLIVCGCLPERFGEELAGALPEADFFFGTGAYHRVIEAVA---- 113 Query: 146 GKRVVDTDYSVEDKFERLSI-------VDGGYNRKRGVTA---FLTIQEGCDKFCTFCVV 195 GK E R ++ + +R+ T ++ I EGCD+ CT+C++ Sbjct: 114 GK---------ESTLSRCTLPPPDAVPMQAAADRRICATPHTVYVKIAEGCDRRCTYCII 164 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSL 254 P RG + SR + +V EAR L+ G E+ L+ Q A+ G D + + LL +L Sbjct: 165 PRLRGRQRSRPPADIVVEARGLVAAGAKELVLVAQETTAY---GADLSPPVSLASLLMAL 221 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 S+ G + +R HP M LI+ + D L Y +PVQ SDR+LK M RRHTA + Sbjct: 222 SDAVGDIWVRVLYMHPDTMDPDLIRVMTERDNLCSYFDVPVQHASDRVLKRMGRRHTAAD 281 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 ++ D IR PD + + +VGFPGE DF +D + + + +F YS Sbjct: 282 LHRLFDDIRRADPDAVLRTTVLVGFPGEKPADFEKLLDFITGVAFDHLGAFIYSDDEALS 341 Query: 375 GSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 + V + +R++ Q + ++++ VG VL+E+ E G GR Sbjct: 342 SHGLDGHVSSKTARHRYDRVMTAQIDISSRRLAKR---VGSREPVLVEEKA-EDGLFFGR 397 Query: 432 SPWLQSVVLN-------SKNHNIGDIIKVRITDVKISTLYGE 466 + W Q+ ++ + ++ GD + VRIT L GE Sbjct: 398 A-WFQAPEVDGDVCFSGAGDYAPGDRVSVRITGASAYDLTGE 438 >gi|2501539|sp|Q49573|Y16R_MYCIO RecName: Full=Putative methylthiotransferase in 16S RNA 5'region Length = 438 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 117/445 (26%), Positives = 228/445 (51%), Gaps = 20/445 (4%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + + GC++N+++S +++ G V AD+ ++NTC + KA K ++ R Sbjct: 10 FAIHTLGCKVNLFESNSIKNDLIMNGLVEVPFDSKADVYIINTCTVTNKADAKSRLYIKR 69 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGE--EILRRSPIVNVVVGPQTYYRLPELLERAR 144 + D +++VAGC++Q + + L+ S + + + E L++ Sbjct: 70 AH-------VQNKDAIIIVAGCMSQVNKDLMDKLKISIQIGNKYKNSVFDLINEYLKKRE 122 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 RV + E KFE+ + + AF+ IQ+GC+ C++C++P++RG + S Sbjct: 123 RIYRV--ENILAEKKFEQTT---QDFIFLENTRAFIKIQDGCNFMCSYCIIPFSRGRQRS 177 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + + ++++ + L+ EI L G N + LD TF DLL +++++ G R+R Sbjct: 178 QKMESILEKIKTLVSKXFKEIVLTGVNTAGY----LDENNNTFFDLLNNINKLDGDFRVR 233 Query: 265 YTTSHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 ++ P ++D +I + + H+ +QSGSD +LK MNR++T E+ +++ +I Sbjct: 234 ISSLEPFQINDEIIDLVTSNKKRFCQHWHICLQSGSDDVLKKMNRKYTTDEFYKLMQKIL 293 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P ++D+IVGFP ETD+D + ++D ++KI F YS R T S+ + ++ Sbjct: 294 NKSPLTNFTTDYIVGFPTETDEDQKKSIDFLNKIKLYDMHIFPYSKRNNTRSSH-YKDIN 352 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 ++ K +R+ + K + +G+ EVL EK +++ G S V++ S Sbjct: 353 DSTKKDRVKEITKLNYLNKKENLKKYIGKTCEVLFEKKKEDEKMWSGYSNEYCRVMVESG 412 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 ++ ++KVRI + +L GE++ Sbjct: 413 DNLENKMLKVRIKKIFFDSLVGEII 437 >gi|299133921|ref|ZP_07027115.1| MiaB-like tRNA modifying enzyme YliG [Afipia sp. 1NLS2] gi|298591757|gb|EFI51958.1| MiaB-like tRNA modifying enzyme YliG [Afipia sp. 1NLS2] Length = 440 Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 134/464 (28%), Positives = 219/464 (47%), Gaps = 49/464 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE D AD++++NTC + A ++ Sbjct: 6 APKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAKQESLG 64 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + E G V+V GC+ AE E+I + P V + GPQ Y + E + R Sbjct: 65 AIGEA-------MAENGK--VIVTGCMG-AEPEQIEKEYPNVLSITGPQQYESVLEAVHR 114 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D + G A+L I EGC+ CTFC++P RG Sbjct: 115 ALPPMHNPHLDL----------VPPQGIKLTPRHYAYLKISEGCNNRCTFCIIPKLRGDL 164 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR + V+ EA KL+ GV E+ ++ Q+ +A W+ + + + F DL Sbjct: 165 VSRPANDVLREAEKLVAAGVKELLVVSQDTSAYGIDIKYESSPWKDRDV---RARFLDLT 221 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L E+ VRL+Y +P + D + G++ +PYL +P Q + +LK M R Sbjct: 222 RELGELGAWVRLQYVYPYPH-VDDVIALMGGNI---LPYLDIPFQHANPEVLKRMRRPAA 277 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I + R PD+ + S FIVGFPGET+ +F+ +D +D+ + FKY P Sbjct: 278 QDKTLARIHKWREQCPDLTLRSTFIVGFPGETESEFQDLLDWLDEAQIDRLGCFKYEPVA 337 Query: 372 GTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KG 426 G + + V + +K R L+ Q+K+ Q++ VG +V+I++ G KG Sbjct: 338 GVTSNALDNPVPDEIKTARWNALMARQQKISAQRLKRK---VGTRQQVIIDEIGPSVAKG 394 Query: 427 KLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + +P + SV ++S+ +GDI+ +I L+G + Sbjct: 395 RSKADAPQIDGSVYVSSRRPLKVGDIVTAKIERADEYDLHGTVA 438 >gi|206560219|ref|YP_002230983.1| ribosomal protein S12 methylthiotransferase [Burkholderia cenocepacia J2315] gi|238065304|sp|B4EAF5|RIMO_BURCJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|198036260|emb|CAR52156.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315] Length = 453 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 135/477 (28%), Positives = 220/477 (46%), Gaps = 61/477 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 5 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ + A G ++ P V V GP + + Sbjct: 64 IGEA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQA 114 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + K D F L + G A+L I EGC+ CTFC++P R Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K + Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221 Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298 DL+ +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + + + + R + PD+ I S FI GFPGET++ F +D V + Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFVREAE 336 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YSP G +++ + + V+ ER + E VG+ ++VLI Sbjct: 337 LDRVGCFAYSPVEGATANDLDGALPDEVREERRARFMEVAEEVSAHRMQRKVGKTLKVLI 396 Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ G+E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 397 DEVGEEGGIGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453 >gi|313112838|ref|ZP_07798485.1| MiaB-like tRNA modifying enzyme YliG [Faecalibacterium cf. prausnitzii KLE1255] gi|310624908|gb|EFQ08216.1| MiaB-like tRNA modifying enzyme YliG [Faecalibacterium cf. prausnitzii KLE1255] Length = 441 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 131/448 (29%), Positives = 218/448 (48%), Gaps = 30/448 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D M + S G+E V + +AD+I++NTC E A + + + Sbjct: 7 SLGCPKNQVDLDVMVHILLSAGHETVADLAEADVILVNTCGFIESAKTEAIENILEACSY 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K ++ +L V+V GC+A+ +I P V+ VVG + + ++ R G+ + Sbjct: 67 K----QQNPELKVIVTGCLAERYRSQIEEEIPEVDAVVGCASNKAIDTIVARLFHGEDHL 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 ++ Y + F G R G A +L I EGC+ C +C +P RG SR + Sbjct: 123 ES-YGAKKDFPL------GGKRVIGTPAHYAYLKIAEGCNNRCHYCAIPGIRGPLHSRDM 175 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 + V EAR L GV E+ ++ Q+ A+ G D G+ + +LL L+++ GL +R Sbjct: 176 ADCVAEARWLAGEGVKELIVVAQDPTAY---GEDWGKPGSICELLDKLNKVPGLEWIRIM 232 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P ++D I A + ++PYL LP+Q +D ILK+MNRR E ++I ++R Sbjct: 233 YAYPERITDEFIAAMKRNEKVVPYLDLPIQHCNDTILKNMNRRSNRAELLEVIGKLRREI 292 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P I + + I GFPGET++ F + V ++ + + F YS T + M Q+++ V Sbjct: 293 PGITLRTTLIAGFPGETEEQFEDLCNFVKEVKFDRLGCFAYSAEENTVAAKMDGQIEQEV 352 Query: 387 K---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG----KLVGRSPWLQSVV 439 K AE ++ +Q + Q+ + VGQ + VL + +E G + G +P + V Sbjct: 353 KDKRAELVMQIQTGIMAQKQAEK---VGQTVHVLCDGIDEESGLYLCRTTGDAPEVDGNV 409 Query: 440 LNSKNHNI--GDIIKVRITDVKISTLYG 465 S + G V + D + LYG Sbjct: 410 CVSSEEPLYPGQFYDVLVDDSDLYDLYG 437 >gi|147919729|ref|YP_686525.1| putative 2-methylthioadenine synthetase [uncultured methanogenic archaeon RC-I] gi|110621921|emb|CAJ37199.1| putative 2-methylthioadenine synthetase [uncultured methanogenic archaeon RC-I] Length = 404 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 137/445 (30%), Positives = 205/445 (46%), Gaps = 52/445 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++++YGC N DS + D + G +S ++AD+IV+NTC + A + + Sbjct: 4 RVYIETYGCTANEADSAGIRDAVLASGGAIASSPEEADVIVVNTCAVTGHTANSMLRAVS 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R + V+VAGC+A AE + V GP + + L R Sbjct: 64 RFPGKR-----------VLVAGCLAVAEPGRLKG----YEFVDGPGSLPVVRALGLRPEA 108 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G + T G TA + I EGC+ C++C+V RG S Sbjct: 109 GLSIAMT----------------------GRTATIKIAEGCNGQCSYCIVRLVRGRIRST 146 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +V+ AR+ I G E+ L Q+ A+ GLD L+ S++ + G ++R Sbjct: 147 PAPDIVEAARRAIAEGASELFLTSQDSGAY---GLD-TGVRLPTLIRSIASLPGNFKVRI 202 Query: 266 TTSHPRDMSDCLIKAHGDLDVL-MP----YLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +P ++D L +DVL P + H+PVQSGSDRILK M R +T EY II Sbjct: 203 GMMNPFSIADILPDM---VDVLNHPKVYRFAHIPVQSGSDRILKLMQRPYTEQEYSAIIS 259 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R+ P I S+D+IVGFP ET+ DFR T++ + + ++SPR GTP + M Sbjct: 260 RLRAGVPGITFSTDYIVGFPTETEADFRLTLEDLRTNRPLKVNITRFSPRPGTPAAAM-P 318 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 V E K ER L E VG VL+ + GK G ++ R P VV+ Sbjct: 319 DVLERTKKERSRMLTALHHEVTSHDLKEAVGSRRSVLVSEKGK-PGTVIARDPSYNMVVI 377 Query: 441 NSKNHNIGDIIKVRITDVKISTLYG 465 ++ +G + V I+ K + L G Sbjct: 378 E-EDLPLGTVANVEISAAKTTYLIG 401 >gi|283856338|ref|YP_162542.2| 30S ribosomal protein S12 methylthiotransferase [Zymomonas mobilis subsp. mobilis ZM4] gi|238055318|sp|Q5NPC9|RIMO_ZYMMO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|6685125|gb|AAF23796.1|AF213822_11 hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4] gi|283775335|gb|AAV89431.2| MiaB-like tRNA modifying enzyme YliG [Zymomonas mobilis subsp. mobilis ZM4] Length = 443 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 126/451 (27%), Positives = 209/451 (46%), Gaps = 42/451 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ S+GY + D+AD++++NTC + A E+ +G Sbjct: 15 SLGCPKALVDSERILTKLRSEGYNLSSQYDEADVVLVNTCGFIDSAKEESLDAIGEAMA- 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ E I R P + + G Q Y E++ + Sbjct: 74 ENGR--------VIVTGCLGN-EANRIRERFPDILAITGAQQY---EEVVSAVHDAAPIE 121 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + Y + L + Y+ +L I EGC+ C+FC++P RG +SR + Sbjct: 122 ASPYVDLVPEQGLKLTPRHYS-------YLKISEGCNHRCSFCIIPSLRGDLVSRRADAI 174 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA KL+ G E+ ++GQ+ +A W+ + + K +DL L E+ Sbjct: 175 LREAEKLVAAGTKELLVIGQDSSAYGVDLRHQEYRWKDRMV---KADLTDLARGLGELGA 231 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + + A G +++PYL +P Q S +LK M R + + Sbjct: 232 WVRLHYVYPYPHVDNLIPLMAEG---LILPYLDIPFQHASPSVLKRMKRPANEVKILDRL 288 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + PDIA+ S F+VGFPGET+ DF+ +D +D+ + +F++ G + Sbjct: 289 TKWREIVPDIALRSSFVVGFPGETEQDFQYLLDWLDEAQLDRVGAFRFEAVEGAAANAFD 348 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQ 436 V E VK ER L +K + + A +G+ I +I++ G G+ +P + Sbjct: 349 GAVPEEVKNERYQRLMEKAAQISEAKLQAKIGRDIATIIDRTDGEGGASGRSYADAPEID 408 Query: 437 SVV--LNSKNHNIGDIIKVRITDVKISTLYG 465 V ++ N IGDI+ VR+ D L+G Sbjct: 409 GEVHLRDADNLKIGDIVTVRVEDADEHDLFG 439 >gi|313201433|ref|YP_004040091.1| miab-like tRNA modifying enzyme ylig [Methylovorus sp. MP688] gi|312440749|gb|ADQ84855.1| MiaB-like tRNA modifying enzyme YliG [Methylovorus sp. MP688] Length = 441 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 132/461 (28%), Positives = 224/461 (48%), Gaps = 48/461 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC DS R+ ++GY S D+DL+V+NTC + A ++ Sbjct: 5 IPKVGFV-SLGCPKASSDSERILTQLRAEGYSISGSYQDSDLVVVNTCGFIDSAVQESLD 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + E G V+V GC+ A+ + + P V V GP + L E++ Sbjct: 64 AIGEA-------LAENGK--VIVTGCLG-AKADVVQNAHPSVLAVTGP---HALEEVMTA 110 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 Y+ + + + Y A+L I EGC+ C+FC++P RG Sbjct: 111 VHANLPKPHDPYTDLVPPQGVRLTPKHY-------AYLKISEGCNHRCSFCIIPSMRGDL 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR + +V+ EA L++ GV E+ ++ Q+ +A W G+ + K ++L Sbjct: 164 VSRPIGEVMQEAENLVNAGVSELLVISQDTSAYGVDVKYRTGFWNGRPI---KTRMTELA 220 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L ++ VR+ Y +P D +I D +++PYL +P Q S RILK+M R + Sbjct: 221 RGLGDLGVWVRMHYVYPYPH--VDEIIPLMAD-GLILPYLDVPFQHASPRILKAMKRPAS 277 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I R + PDI I S FI GFPGET++DF+ +D + + + F YS Sbjct: 278 SENNLARIKAWRDICPDITIRSTFITGFPGETEEDFQMLLDFLQEAELDRVGCFAYSAVD 337 Query: 372 GTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEK-G 426 G + + + V E +K ERL + +Q+ + +++ VG++ VL+ E +G E Sbjct: 338 GAAANALPDAVPEELKQERLARFMEVQEAISAEKLQRR---VGRLETVLVDEVNGDEAIA 394 Query: 427 KLVGRSPWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYG 465 + + +P + VV +++ N GD+++V+ITD L+G Sbjct: 395 RTMSDAPEIDGVVYLADAEGLNPGDLVEVQITDADGHDLWG 435 >gi|312384872|gb|EFR29498.1| hypothetical protein AND_01451 [Anopheles darlingi] Length = 526 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 131/471 (27%), Positives = 220/471 (46%), Gaps = 56/471 (11%) Query: 20 QCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 + ++P Q+ ++K++GC N D+ M GY + ADL VLN+C ++ + Sbjct: 59 ESVIPETQQIYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKKAADLWVLNSCTVKNPSE 118 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTYYR 135 + RN + + G VVVAGCV QA RS ++ VVG Q R Sbjct: 119 DT-------FRNEIEAAHRAGKH--VVVAGCVPQAAP-----RSDYLHGLSVVGVQQIDR 164 Query: 136 LPELLERARFGKRV-------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188 + E++E G V V+ K + RK + + I GC Sbjct: 165 VAEVVEETLKGHSVRLLQAKKVNGRKVAGPKLALPKV------RKNPLIEVIPINSGCLN 218 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248 CT+C + R +S + ++V+ A+++ + GVCEI L ++ + G+ +D + Sbjct: 219 SCTYCKTKFARADLVSYPVQEIVERAQQVFEEGVCEIWLTSEDTGTY-GRDIDS---SLP 274 Query: 249 DLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300 +LL+ L E+ G+ Y H +M+ L AH + +LH+PVQSGSD Sbjct: 275 ELLWKLVEVIPEGCMMRLGMTNPPYILEHLEEMAKVL--AHPRV---YSFLHIPVQSGSD 329 Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 IL M R + E+ +++D +R P I I++D I GFPGET+ DF+ T+ L K + Sbjct: 330 TILGEMKREYCVQEFERVVDFLREKVPGITIATDIICGFPGETETDFQGTVALCKKYEFP 389 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE---QQVSFNDACVGQIIEVL 417 F ++ PR GTP + M E V A + K+L + + G I VL Sbjct: 390 SLFINQFFPRPGTPAAKM-----ERVPANEVKTRTKRLTDLFHSYEPYKKYTPGTIQTVL 444 Query: 418 IEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + ++ VG + + + V+L N+ +G ++V IT +++G+++ Sbjct: 445 VTEISHDRKHYVGHNKFYEQVLLPMHNNLLGKQVEVEITGCTKFSMFGKVL 495 >gi|256822298|ref|YP_003146261.1| MiaB-like tRNA modifying enzyme YliG [Kangiella koreensis DSM 16069] gi|256795837|gb|ACV26493.1| MiaB-like tRNA modifying enzyme YliG [Kangiella koreensis DSM 16069] Length = 455 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 125/405 (30%), Positives = 200/405 (49%), Gaps = 42/405 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY+ V + +DAD++V+NTC + A ++ +G N Sbjct: 24 SLGCPKALVDSERILTQLRTEGYDIVPTYEDADIVVVNTCGFIDAAKQESLEAIGEALN- 82 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 E G V+V GC+ A+ +I P V V GP Y ++ + K Sbjct: 83 ------ENGK--VIVTGCLG-AQENDIREIHPGVLSVSGPAQYEQVLTAVHEHLPPK--- 130 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 S D F L G R A+L I EGC+ C+FC++P RG +SR + QV Sbjct: 131 ----SEHDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHKCSFCIIPSMRGKLVSRPVGQV 185 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 +DEA +L+ G E+ ++ Q+ +A W+G+ + K D+ +L +++ Sbjct: 186 LDEAERLVKAGTKELLVVSQDTSAYGVDKKYAMDFWQGQPV---KTRMKDMCEALGQLEN 242 Query: 260 L-VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 + VRL Y +P + A G + +PYL +P Q S RILK M R + Sbjct: 243 VWVRLHYVYPYPHVDDIIPLMAEGKI---LPYLDIPFQHASPRILKLMKRPGDINNVLER 299 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I + R + PDI I S FIVGFPGET+++F+ +D ++ + FKYSP G + + Sbjct: 300 IQKWRDICPDITIRSTFIVGFPGETEEEFQELLDFLEVAQLDRVGCFKYSPVEGASANEL 359 Query: 379 LEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEK 420 V E VK ERL + +Q+ + +++ VG+I+ VL+++ Sbjct: 360 PAPVPEKVKEERLARFMAVQEAISAKKLQQK---VGKIMTVLVDE 401 >gi|12003025|gb|AAG43441.1|AF186181_1 slr0082 [Synechococcus sp. PCC 7002] Length = 317 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 101/304 (33%), Positives = 164/304 (53%), Gaps = 9/304 (2%) Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229 Y A+L + EGCD C FC++P+ RG + SR + +V EA++L + GV EI L+ Sbjct: 16 YRTTNEAVAYLRVAEGCDYRCAFCIIPHLRGDQRSRPIESIVAEAKQLAEQGVQEIILIS 75 Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288 Q + GK + G K ++LL +L + +R+ Y ++P ++ +I A D ++ Sbjct: 76 QITTNY-GKDIYG-KPKLAELLRALGGVDVPWIRIHY--AYPTGLTPEVIAAMRDTPNVI 131 Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348 PYL LP+Q IL++MNR +II+ ++ PD + + FIVGFPGET++ F+ Sbjct: 132 PYLDLPLQHSHPDILRAMNRPWQGRVNDRIIEDLKKALPDAILRTTFIVGFPGETEEHFQ 191 Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408 +D V + + F +S GTP ++ Q+ ++VK R L + + N+ Sbjct: 192 HLVDFVKRHEFDHVGVFTFSAEEGTPAIDLPNQLPQSVKDSRRDALMEIQQPIAARRNEL 251 Query: 409 CVGQIIEVLIEKHGKEKGKLVGRSPWLQS----VVLNSKNHNIGDIIKVRITDVKISTLY 464 CVGQ ++VLIE+ G+L+GRSP +V + ++G I+ V+IT I LY Sbjct: 252 CVGQTVDVLIEQENPATGELIGRSPRFAPDVDGLVYVTGEASLGSIVPVQITAADIYDLY 311 Query: 465 GELV 468 G +V Sbjct: 312 GTIV 315 >gi|253999410|ref|YP_003051473.1| 30S ribosomal protein S12 methylthiotransferase [Methylovorus sp. SIP3-4] gi|253986089|gb|ACT50946.1| MiaB-like tRNA modifying enzyme YliG [Methylovorus sp. SIP3-4] Length = 452 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 136/476 (28%), Positives = 231/476 (48%), Gaps = 53/476 (11%) Query: 13 MVSQIVDQCI-----VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVL 67 M +QI+ + I +P+ FV S GC DS R+ ++GY S D+DL+V+ Sbjct: 1 MSAQILIENIRMNQSIPKVGFV-SLGCPKASSDSERILTQLRAEGYSISGSYQDSDLVVV 59 Query: 68 NTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV 127 NTC + A ++ +G + E G V+V GC+ A+ + + P V V Sbjct: 60 NTCGFIDSAVQESLDAIGE-------ALAENGK--VIVTGCLG-AKADVVQNAHPSVLAV 109 Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187 GP + L E++ Y+ + + + Y A+L I EGC+ Sbjct: 110 TGP---HALEEVMTAVHANLPKPHDPYTDLVPPQGVRLTPKHY-------AYLKISEGCN 159 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WR 236 C+FC++P RG +SR + +V+ EA L++ GV E+ ++ Q+ +A W Sbjct: 160 HRCSFCIIPSMRGDLVSRPIGEVMQEAENLVNAGVSELLVISQDTSAYGVDVKYRTGFWN 219 Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 G+ + K ++L L ++ VR+ Y +P D +I D +++PYL +P Q Sbjct: 220 GRPI---KTRMTELARGLGDLGVWVRMHYVYPYPH--VDEIIPLMAD-GLILPYLDVPFQ 273 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 S RILK+M R ++ I R + PDI I S FI GFPGET++DF+ +D + + Sbjct: 274 HASPRILKAMKRPASSENNLARIKAWRDICPDITIRSTFITGFPGETEEDFQMLLDFLQE 333 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQI 413 + F YS G + + + V E +K ERL + +Q+ + +++ VG++ Sbjct: 334 AELDRVGCFAYSAVDGAAANALPDAVPEELKQERLARFMEVQEAISAEKLQRR---VGRL 390 Query: 414 IEVLI-EKHGKEK-GKLVGRSPWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYG 465 VL+ E +G E + + +P + VV +++ N GD+++V+ITD L+G Sbjct: 391 ETVLVDEVNGDEAIARTMSDAPEIDGVVYLADAEGLNPGDLVEVQITDADGHDLWG 446 >gi|145352560|ref|XP_001420609.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580844|gb|ABO98902.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 450 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 126/441 (28%), Positives = 214/441 (48%), Gaps = 44/441 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D M G++ + + AD IV+N+C E A + + L Sbjct: 3 SLGCPKNTVDGEVMLGDLHGAGFDVTDDHESADAIVINSCGFVEDAKNESVEAILEASQL 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N K ++V GC+AQ ++ P +V+VG + Y LP+ + G V Sbjct: 63 ANGSKK------IIVTGCLAQRYANDLANELPEADVIVGFENYANLPKTVG----GLLGV 112 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGV---------TAFLTIQEGCDKFCTFCVVPYTRGI 201 +T+ + + R+ + + + TA+L + EGCD CTFC +P RG Sbjct: 113 ETNGLIAPQQARVQVGGASPPFREEIKRLRITPRHTAYLRVAEGCDHKCTFCAIPSFRGR 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-------RGKGLDGEKCTFSDLLYSL 254 S+ ++DEA+ L D+GV E+ L+ ++ N W G+GL ++LLY+L Sbjct: 173 FRSKPWQSIIDEAKALADSGVRELNLIAEDTNQWGIDLRASDGRGL-------AELLYAL 225 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN---RRHT 311 +E++G+ +R ++P SD LI+A D+ + Y+ +P+Q ++ L MN R+HT Sbjct: 226 AEVEGIEWMRILYAYPSYFSDELIRAIADVPQVCKYIDIPLQHITNLSLLRMNRPPRQHT 285 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 ++ DRI PD+A+ + FI GFPGET+++ M + + +F YS Sbjct: 286 EDLLYKLRDRI----PDLALRTTFISGFPGETEEEHEELMQFCRDFKFERLGAFAYSEED 341 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 GTP +QV E ++A R L + +E F + VG+ ++VLI+ ++ +GR Sbjct: 342 GTPAMEYPDQVPEEIRAIRRDQLVSQQQEISEDFAMSRVGKDVDVLIDNWDEDMQAFIGR 401 Query: 432 S----PWLQSVVLNSKNHNIG 448 + P + VV +++ + G Sbjct: 402 TTLEAPDIDPVVFVTEDKSKG 422 >gi|329847307|ref|ZP_08262335.1| RNA modification enzyme, MiaB family protein [Asticcacaulis biprosthecum C19] gi|328842370|gb|EGF91939.1| RNA modification enzyme, MiaB family protein [Asticcacaulis biprosthecum C19] Length = 455 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 134/459 (29%), Positives = 210/459 (45%), Gaps = 56/459 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ +GY+ S AD+IV+NTC + A E+ + +G Sbjct: 5 SLGCPKALVDSERILTRLKGEGYDTSASYAGADVIVVNTCGFLDSAKEESLNAIGEA--- 61 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + E G V+V GC+ E I R P V V G Y V+ Sbjct: 62 ----LAENGK--VIVTGCMGGDEAM-IRARFPNVAAVTGAHQY-------------DAVM 101 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D +++ D F+ L + D G A+L I EGCD C+FC++P RG SR Sbjct: 102 DAVHNIVPPKPDPFKSL-VPDEGVRLTPKHYAYLKISEGCDHRCSFCIIPTLRGDLASRP 160 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 +++V+ EA L GV E+ ++ Q+ +A WRG+ +F DL L Sbjct: 161 VAEVLREAETLAKAGVKELLVVSQDTSAYGLDIRYAQSEWRGQNW---AASFEDLSRGLG 217 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 E+ VR+ Y +P + A G + +PYL +P Q S +ILK+M R + Sbjct: 218 ELGIWVRMHYVYPYPHVSGVLPLMAEGKI---LPYLDIPFQHASPKILKAMKRPGNQDKT 274 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 Q I+ R + PD+ + S F+VGFPGET+ DF +D ++ + +F Y G P Sbjct: 275 LQRIESWREICPDLTLRSTFVVGFPGETEADFNLLLDWMEAAQIDRVGAFAYENVEGAPA 334 Query: 376 SNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLV 429 + + V E VK +RL + + ++ Q+++ A VG+I +VL+++ G + Sbjct: 335 KLLPDHVPEEVKQDRLARFMAVASRISAQKLA---AKVGRIEDVLVDEIRSDGVAVARTR 391 Query: 430 GRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466 G +P + + GD K R+T L+GE Sbjct: 392 GDAPEIDGHIYLKGFTGLKAGDYAKARVTRADAYDLWGE 430 >gi|31790361|gb|AAP58618.1| putative 2-methylthioadenine synthetase [uncultured Acidobacteria bacterium] Length = 450 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 129/463 (27%), Positives = 218/463 (47%), Gaps = 44/463 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + GYE +AD +V+NTC + A ++ + L Sbjct: 8 SLGCPKNLVDSEVMMGQLKANGYELTADASEADTVVVNTCGFIDSAKQESIDTI-----L 62 Query: 91 KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVG------------PQTYYR-L 136 + +R+K G ++VAGC+ + +E+ P V+ +G P T R L Sbjct: 63 EAARLKSDGKATRIIVAGCLVERYRDELKASIPEVDAFIGTSQINDILSVCDPHTNTRAL 122 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 P + G + Y ++ R+ Y AF+ I EGCD+ C FC +P Sbjct: 123 PVI----PLGNQ--SATYLYDESTPRVLATPSHY-------AFIKIAEGCDRPCAFCFIP 169 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 RG SR +V EA++L + GV E+ L+ Q+ + + G+ L G+ + LL LS Sbjct: 170 QMRGHFRSRRFGSIVAEAQQLAEEGVKELILVAQDSSRY-GEDL-GKDDALAHLLRELSH 227 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 G+ +R ++P +SD ++ + + YL +P+Q S +LK M R Sbjct: 228 TDGIEWVRVMYTYPTHISDGFLEVLAEEAKAVKYLDMPLQHASQNVLKLMKRGGNRASLE 287 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++I R+R P+IA+ + FI GFPGETD+DF + V + + + F YS GTP Sbjct: 288 RLIKRVRDRVPEIAVRTTFITGFPGETDEDFEELLTFVKNVEFDRVGVFTYSDEEGTPAY 347 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGR 431 ++ +V+ + +R L K+ + + A +G+ + V+ E E +G++ + Sbjct: 348 DLPNKVEPKIAKQRRARLMKEQAKIAKRKHKAMIGRQVRVIFEGESSESELLWQGRMETQ 407 Query: 432 SPWLQSVVL-NSKNHNI----GDIIKVRITDVKISTLYGELVV 469 +P + VL N + G+++ V IT+ + L G +VV Sbjct: 408 APDIDGCVLINDAPEDFAPMPGEMLHVMITEAQEYDLVGRIVV 450 >gi|319408559|emb|CBI82212.1| putative enzyme [Bartonella schoenbuchensis R1] Length = 437 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 140/461 (30%), Positives = 216/461 (46%), Gaps = 47/461 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ S+GYE + ADL+++NTC + A Sbjct: 3 APRISFV-SLGCPKALVDSERIITSLRSEGYEISHKHQGADLVIVNTCGFLDSA------ 55 Query: 83 FLGRIRNLKN--SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 R +L N IKE G V+V GC+ AE E I + P V + GPQ Y + + + Sbjct: 56 ---RTESLANIEKAIKENGK--VIVTGCLG-AEPEVIRQAHPSVLAITGPQAYENVIQAV 109 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 VV V D F L G R A+L I EGC C+FC++P RG Sbjct: 110 HT------VVP---PVHDPFVDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPALRG 159 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSD 249 +SR + ++ EA KL+ GV E+ ++ Q+ +A W+ + + K F D Sbjct: 160 NLVSRPIGDILREAEKLVQAGVKELLIISQDTSAYGIDIKYAESSWKDRTI---KTKFLD 216 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 L L ++ VR+ Y +P + + A G + +PYL +P Q S +L++M R Sbjct: 217 LCRELGDMGVWVRMHYVYPYPHVDAVIELMAAGKI---LPYLDIPFQHASPTVLRNMKRP 273 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + + I+ R + PD+ + S FIVGFPGET++DF ++ +++ +A FKY Sbjct: 274 AHMEKTNRRIEEWRKICPDLTLRSTFIVGFPGETNEDFEMLLEWLEETKIERAGCFKYEA 333 Query: 370 RLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK-EKG 426 G +++ L V E VK R K ++ +GQ +++LI E GK KG Sbjct: 334 VKGAAANDLELGNVAEEVKESRWHRFMAKQQQISARLLKKKIGQRLQILIDESQGKVAKG 393 Query: 427 KLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465 + +P + VV S + G+ + V+I LYG Sbjct: 394 RSKYDAPEIDGVVHISSRRPLRSGEFVTVKIEQSDAYDLYG 434 >gi|212551080|ref|YP_002309397.1| Fe-S oxidoreductase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549318|dbj|BAG83986.1| putative Fe-S oxidoreductase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 433 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 115/380 (30%), Positives = 198/380 (52%), Gaps = 23/380 (6%) Query: 21 CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 C ++ + GC++N ++ + + F G + V ++ D+++++TC + E+A +K Sbjct: 6 CFHDKKAAYYTLGCKLNYAETSAIRECFLQVGIKTVQGEENPDIVIISTCSVTEEANKKC 65 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 + + R+R ++ +VV GC AQ EEI++ I ++VVG + L + + Sbjct: 66 RNLIRRVR-------RKYSSAFLVVTGCYAQLCSEEIIKIEGI-DLVVGLEGKRNLSKYV 117 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R G ++ + +F DG R R +FL IQ+GCD C++C +P RG Sbjct: 118 LRGERG--IIVSPMMESQEFTPACSYDG---RTR---SFLKIQDGCDYTCSYCTIPLARG 169 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 +R +S +V + +L GV EI L G N+ + GK GE F DLL L +++ + Sbjct: 170 KSRNRKISDLVRNSMQLGAKGVKEIVLTGVNIGDF-GKS-TGE--NFLDLLRDLDKVENI 225 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R R ++ P +SD +I+ D +P+ H+P+QSGSD +L+ MNR++ R I+ Sbjct: 226 SRFRISSIEPNLLSDEIIEFVAFSDRFVPHFHIPLQSGSDAVLRLMNRKYDIVLLRSKIE 285 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +I+++ D I D IVG GETD+ FR + ++ + ++Q F YS R T N+ + Sbjct: 286 KIKTLMTDAFIGFDIIVGMRGETDEYFRESQKFLESLPFSQLHVFTYSERPATMALNINQ 345 Query: 381 QVDENVKAER---LLCLQKK 397 + + ER LL L K+ Sbjct: 346 MITLKKRQERRKELLALSKR 365 >gi|325290323|ref|YP_004266504.1| SSU ribosomal protein S12P methylthiotransferase [Syntrophobotulus glycolicus DSM 8271] gi|324965724|gb|ADY56503.1| SSU ribosomal protein S12P methylthiotransferase [Syntrophobotulus glycolicus DSM 8271] Length = 442 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 122/453 (26%), Positives = 228/453 (50%), Gaps = 27/453 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ V + GC N DS + F + Y+ V+ A +I++NTC ++A ++ + L Sbjct: 3 KKVAVINLGCPKNQVDSEVLAG-FLVRKYQLVDEPAKAHIIIVNTCTFIDEAKQESINEL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ K + I E V+ GC+AQ G+E++ P +++V+G + + +E A+ Sbjct: 62 CQMVEYKKNGICEK----VIATGCMAQRYGKELIEEIPELDMVLGDGNLANILDHIEEAK 117 Query: 145 FGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 KR++ + ++K R + Y A++ I EGC+ C++CV+P +G Sbjct: 118 -DKRLLTWQETQSFLYDEKMPRQRFEESHY-------AYIKIAEGCNNRCSYCVIPQIKG 169 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259 SR+ ++ E L + GV EI + Q+ + G+D + ++LL +++EI G Sbjct: 170 SYRSRTKESILGEVAWLAEQGVKEIIVTAQDTTRY---GMDIYQGLELANLLAAIAEIDG 226 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + +R +P +D LI+ + YL +P+Q +++IL MNRR+ + ++I Sbjct: 227 IEWIRLLYCYPEVFTDELIEVMRKEPKICKYLDIPLQHANNKILTEMNRRYLKQDVERLI 286 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +++R PDI + + FI GFPGE ++++ + V ++ + + F YS TP Sbjct: 287 NKLRKAIPDIVLRTTFITGFPGEGEEEYAELQNFVREMKFDRLGVFAYSREENTPAGMRK 346 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQ 436 +QV E V+ +R L + EQ +G+ ++VL+E+ H + G+ G +P + Sbjct: 347 DQVPEEVREDRKNRLLELQAEQAEENQKKWIGKTVKVLLEERLDHTQWLGRSEGDAPEID 406 Query: 437 SVVL---NSKNHNIGDIIKVRITDVKISTLYGE 466 V K + GD+I+V +T+ I L GE Sbjct: 407 GQVYVRAQKKEFSTGDMIEVTVTNADIYDLEGE 439 >gi|221640408|ref|YP_002526670.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides KD131] gi|221161189|gb|ACM02169.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides KD131] Length = 425 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 131/435 (30%), Positives = 210/435 (48%), Gaps = 42/435 (9%) Query: 30 KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 + GC++N Y++ M+++ + G +D+A +V+NTC + +A K + R+R Sbjct: 7 STLGCRLNAYETEAMKELATAAG------VDNA--VVVNTCAVTAEAVRKAKQEIRRLR- 57 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLER 142 +E ++V GC AQ E P V+ V+G P T+ + P+L+ Sbjct: 58 ------RENPQATIIVTGCAAQTE-PATFSAMPEVDRVIGNTEKMQPATWAAMAPDLIGE 110 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +RV VD SV + L +DG + R R A++ +Q GCD CTFC++PY RG Sbjct: 111 T---ERVQVDDILSVRETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPYGRGN 161 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S VV++ R+L+D G E+ L G ++ +W G L ++ L + L Sbjct: 162 SRSVPAGVVVEQIRRLVDRGFAEVVLTGVDLTSW-GADLPAAPRLGDLVMRILRLVPDLA 220 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ + + L+ A LMP+LHL +Q G D ILK M RRH + + + Sbjct: 221 RLRISSIDSIEADEALMGALATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCEE 280 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R +RPDI +D I GFP ET+ F ++ LV++ G F +SPR GTP + M Q Sbjct: 281 ARRLRPDIVFGADIIAGFPTETEAAFANSLKLVEECGLTFLHVFPFSPRQGTPAARM-PQ 339 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + V ER L+ + ++ + G+ VL+E G +GR+ V Sbjct: 340 LAGPVIRERAAQLRTLGEARLLAHLEGERGRTHRVLME------GPRLGRTEQFTEVAF- 392 Query: 442 SKNHNIGDIIKVRIT 456 + + G I+ +T Sbjct: 393 AADQAEGRILSATVT 407 >gi|254476913|ref|ZP_05090299.1| MiaB-like tRNA modifying enzyme [Ruegeria sp. R11] gi|214031156|gb|EEB71991.1| MiaB-like tRNA modifying enzyme [Ruegeria sp. R11] Length = 421 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 117/397 (29%), Positives = 191/397 (48%), Gaps = 31/397 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ G + + +V+NTC + +A K + ++R Sbjct: 9 TLGCRLNAYETEAMKELSQQAGLQ--------NAVVVNTCAVTAEAVRKARQEIRKLR-- 58 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL---PELLER 142 +E D ++V GC AQ E E + V+ + P+T+ ++ P+ + Sbjct: 59 -----RENPDAPIIVTGCAAQTEPETFAAMEEVTQVIGNTEKMQPKTWQQIAKGPDFIGT 113 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K VD SV + L +DG R R A++ +Q GCD CTFC++PY RG Sbjct: 114 TE--KVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNS 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S VVD+ ++L+D G E+ L G ++ +W G L ++ L + L R Sbjct: 167 RSVPAGVVVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPATPKLGDLVMRILKLVPDLPR 225 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ + L++A LMP+LHL +Q G D ILK M RRH + + + Sbjct: 226 LRISSIDSIEVDENLMQAIATESRLMPHLHLSLQHGDDLILKRMARRHLRDDAIRFTEEA 285 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 +RPD+ +D I GFP ETD F ++ LV F YS R GTP + + QV Sbjct: 286 SRLRPDMTYGADIIAGFPTETDAHFENSLKLVKDCNLTWLHVFPYSKREGTPAARIPNQV 345 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 + V +R L+ Q + A VG+ ++L+E Sbjct: 346 NGTVIKDRAARLRAAGDAQVQAHLAAQVGRTHQILME 382 >gi|332559404|ref|ZP_08413726.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides WS8N] gi|332277116|gb|EGJ22431.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides WS8N] Length = 425 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 131/435 (30%), Positives = 210/435 (48%), Gaps = 42/435 (9%) Query: 30 KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 + GC++N Y++ M+++ + G +D+A +V+NTC + +A K + R+R Sbjct: 7 STLGCRLNAYETEAMKELATAAG------VDNA--VVVNTCAVTAEAVRKAKQEIRRLR- 57 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLER 142 +E ++V GC AQ E P V+ V+G P T+ + P+L+ Sbjct: 58 ------RENPQATIIVTGCAAQTE-PATFSAMPEVDRVIGNTEKMQPATWAAMAPDLIGE 110 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +RV VD SV + L +DG + R R A++ +Q GCD CTFC++PY RG Sbjct: 111 T---ERVQVDDILSVRETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPYGRGN 161 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S VV++ R+L+D G E+ L G ++ +W G L ++ L + L Sbjct: 162 SRSVPAGVVVEQIRRLVDRGFAEVVLTGVDLTSW-GADLPAAPRLGDLVMRILRLVPDLA 220 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ + + L+ A LMP+LHL +Q G D ILK M RRH + + + Sbjct: 221 RLRISSIDSIEADEALMGAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCEE 280 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R +RPDI +D I GFP ET+ F ++ LV++ G F +SPR GTP + M Q Sbjct: 281 ARRLRPDIVFGADIIAGFPTETEAAFANSLKLVEECGLTFLHVFPFSPRQGTPAARM-PQ 339 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + V ER L+ + ++ + G+ VL+E G +GR+ V Sbjct: 340 LAGPVIRERAAQLRTLGEARLLAHLEGERGRTHRVLME------GPRLGRTEQFTEVAF- 392 Query: 442 SKNHNIGDIIKVRIT 456 + + G I+ +T Sbjct: 393 AADQPEGRILSATVT 407 >gi|53803983|ref|YP_114150.1| hypothetical protein MCA1711 [Methylococcus capsulatus str. Bath] gi|53757744|gb|AAU92035.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath] Length = 436 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 134/437 (30%), Positives = 212/437 (48%), Gaps = 26/437 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++S GC++N + F + G+ V+ DADLIVLN+C + +A K + Sbjct: 2 RINLQSLGCRLNEAELESWAREFQAAGHRLVSETGDADLIVLNSCAVTAEAVRKSRQMIR 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R + L + R + +V++GC A G+E V++VV RL E+ R Sbjct: 62 RTQRL-SPRAR------LVLSGCYATLHGDEAAALG--VDLVVSNADKSRLVEIAARELA 112 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + ++S E L + R+R AF+ +Q+GC CTFC+V RG E SR Sbjct: 113 LEAM--PEFSTEPGEAALFAL----GRQR---AFVKVQDGCRYRCTFCIVTVARGEERSR 163 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++V+ E R+L GV E+ L G ++ + G L L+ S+ + + RLR Sbjct: 164 LPAEVIREIRRLQAEGVQEVVLTGVHLGGY-GSDLG---LPLDALIRSILQETEIPRLRL 219 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 + P D+ + MP+LHLP+QSGSD +LK M RR + E+ ++ D R Sbjct: 220 GSLEPWDLPPGFFDLFEN-PRFMPHLHLPLQSGSDTVLKRMARRCKSEEFARLADHARRQ 278 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDI I++D IVGFPGET+ ++ ++ ++ IG+ F YS R GT + M V Sbjct: 279 VPDINITTDIIVGFPGETEREWEESLQFIETIGFGDIHVFTYSVREGTKAAAMGGHVPAE 338 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQSVVLNSKN 444 +K ER L + Q+ + VG+ + VL E + G G +P +L+ + + Sbjct: 339 IKKERSRVLHELALGQKRALLGRFVGREMPVLWEN--RRDGADRGYTPNYLRVAIQTPET 396 Query: 445 HNIGDIIKVRITDVKIS 461 I VR+ V S Sbjct: 397 GLTNRITPVRLVKVDAS 413 >gi|18978284|ref|NP_579641.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638] gi|18894107|gb|AAL82036.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638] Length = 425 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 133/452 (29%), Positives = 227/452 (50%), Gaps = 39/452 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGC N D M + S GYE V ++AD++V+N+C +++ K+ Sbjct: 3 KVYIENYGCARNRADGEIMAGLLLSSGYEIVEGEENADIVVVNSCAVKDPTEVKIAR--- 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIR L + K V+V GC+ + I R V+ V+G ++ R+ + +E A Sbjct: 60 RIRELLDRGKK------VIVTGCLPHVNPDAIDER---VSAVLGVKSIDRIVQAVEYALR 110 Query: 146 GKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++++ SV D +R L +D RGV L I EGC CT+C RG+ S Sbjct: 111 GEKLI----SVPDWRKRNLDKLDFPRLSPRGVHFILPIAEGCLNGCTYCATRSARGVLKS 166 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 S ++V+ + I G EI L ++ + G D + LL ++ I+G R+R Sbjct: 167 YSPEKIVEWVKWAIRQGYKEIWLSAEDTGCY---GFD-IGTNLAKLLDEITAIEGEFRIR 222 Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +P + D LI+A+ D V +LHLPVQSG + IL+ M R +T E+ +I++ Sbjct: 223 VGMMNPNHVLKFLDELIEAYKDEKVYK-FLHLPVQSGDNEILRRMGRTYTVEEFEEIVNA 281 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R PD+ + +D IVGFPGE+++ F+ +++L+ +I + +YSPR GT + +Q Sbjct: 282 FRREFPDLNLHTDIIVGFPGESEEAFQRSLELIKRIKPDKVNVSRYSPRPGTIAAKW-KQ 340 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + V ER + + + N VG+ +++L+ GK KG + +V +N Sbjct: 341 LPGWVVKERSRIMHRVRLQISYEINQRYVGRKVDILVHGEGK-KGN-------VDAVTMN 392 Query: 442 SKNHNI-----GDIIKVRITDVKISTLYGELV 468 K+ I G+ + ++ + L GE+V Sbjct: 393 YKHIIIPRGEKGEFARAKVNGATSTYLLGEIV 424 >gi|262039459|ref|ZP_06012763.1| protein YqeV [Leptotrichia goodfellowii F0264] gi|261746526|gb|EEY34061.1| protein YqeV [Leptotrichia goodfellowii F0264] Length = 453 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 122/447 (27%), Positives = 221/447 (49%), Gaps = 29/447 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + F Y+ V+ + AD+ ++NTC + A +K L R +N Sbjct: 27 TLGCKVNQYETEIIRKDFLDHNYKEVDFDEKADVYIVNTCTVTNVADKKNRKMLRRAKNT 86 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 D LVV GC AQ ++ L+ ++ ++G + ++ K V Sbjct: 87 -------NPDSLVVATGCYAQTNLDD-LKEMKEIDFIIGNSKKENVFNII-----NKNV- 132 Query: 151 DTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + Y V++ F+ Y + AF+ IQ+GC KFC++C +PY RG+ SR+ Sbjct: 133 -SHYQVDNIFDEKEYSSNKYTILREKARAFVKIQDGCSKFCSYCKIPYARGLSRSRATEH 191 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLRYTTS 268 V++E L + G E+ L G N++ + GLD E K F LL + +K + R+R ++ Sbjct: 192 VLEEINYLGEQGYKEVVLTGINMSEY---GLDLEPKTDFDTLLEKILAVKSVERVRVSSV 248 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++D + + LMP+LH+ VQ+ D+IL+ M R + A +++++ P+ Sbjct: 249 YPDTITDKFLGMLKNNPKLMPHLHVSVQTLDDKILRLMRRNYKAEFVVNTLEKVKREVPE 308 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A+++D IVGFP E +++F TM +D +G+A F YS R T + ++D K Sbjct: 309 VALTADIIVGFPQEEEENFANTMKNLDSLGFADLHVFPYSDREKTTAMLLDGKIDAVEKK 368 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN----SKN 444 R+ +++ + F VG V IE+ ++K G + V ++ KN Sbjct: 369 RRVKKVEELNNIKYAEFRKKTVGSKQRVYIEEIVEDKA--FGYTENYLKVFIDLKKGEKN 426 Query: 445 H---NIGDIIKVRITDVKISTLYGELV 468 + + D++ +I D L G+++ Sbjct: 427 NLDVKVSDLVNTKIVDFDGILLEGDII 453 >gi|317056861|ref|YP_004105328.1| MiaB-like tRNA modifying enzyme YliG [Ruminococcus albus 7] gi|315449130|gb|ADU22694.1| MiaB-like tRNA modifying enzyme YliG [Ruminococcus albus 7] Length = 443 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 122/435 (28%), Positives = 207/435 (47%), Gaps = 18/435 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D+ M +GYE V+ AD++++NTC E A ++ + L Sbjct: 9 SLGCPKNQVDAEHMLFDLKKEGYELVSDAALADVVIVNTCGFIESAKQEAIDTILEFCTL 68 Query: 91 KNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K RIK V+ GC+A+ +E+ + P ++ VVG + + +++ + Sbjct: 69 KQEGRIKH-----VIATGCLAERYRDEMKKEIPELDAVVGLGSNGNIADIIRDIYRTEES 123 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + S D L + G A++ I EGC CT+C +P RG SR + Sbjct: 124 ICAYGSKTD----LPMEGGRLISTEPFFAYIKIAEGCSNCCTYCAIPAIRGKFRSRKMED 179 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 +++EA+ L ++GV E+ ++ Q+ + G+ L G K +LL L EI G +R S+ Sbjct: 180 ILEEAKWLAEHGVTELVVIAQDTTRY-GEDLYG-KSMLPELLKKLCEIDGFKWIRTLYSY 237 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P +SD I + L+ Y+ +P+Q + ILK MNR + ++I ++R+ PDI Sbjct: 238 PERISDEFIDVLASEEKLVKYIDMPIQHCNAEILKRMNRVGSEAYLLELIQKLRARIPDI 297 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 + + I GFPGET+ F + V +G+ + F YSP GT +M +QVDE + Sbjct: 298 VLRTTLIAGFPGETEAQFEELCEFVKNVGFERLGCFAYSPEEGTKAYSMPDQVDEQTRNR 357 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--NSK 443 R + ++ +N A +G+ +E++ E + GR +P + V + K Sbjct: 358 RADIIMQEQMLVADRYNQAQLGKTVEIVCEGFDRYAECYFGRGAADAPDIDGKVFFTSEK 417 Query: 444 NHNIGDIIKVRITDV 458 +G +KV + D Sbjct: 418 KVAVGQYVKVELFDT 432 >gi|296328428|ref|ZP_06870954.1| 2-methylthioadenine synthetase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154502|gb|EFG95294.1| 2-methylthioadenine synthetase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 435 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 129/449 (28%), Positives = 228/449 (50%), Gaps = 40/449 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ +++ +GYE V D +D+ ++N+C + A K + L R + + Sbjct: 11 TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138 N + K V+V GC AQ EIL +S IVN V + Sbjct: 71 -NPKAK------VIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ER + G + +Y E +F L + A++ IQ+GC+ FC++C +P+ Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG SR ++ E KL+++G EI L+G +++A+ G+ + EK F LL + IK Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEIILIGIDLSAY-GEDFE-EKDNFESLLEDILRIK 226 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L R+R + +P ++D I+ + LMP+LH+ +QS D +LK+M R + + ++ Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKN-KKLMPHLHISLQSCDDTVLKNMRRNYGSSLIKKS 285 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + +++S D+ ++D IVGFP E + F+ T D++ +I ++ F+YS R GT SNM Sbjct: 286 LLKLKSKVKDMEFTADVIVGFPKEDEIMFQNTYDVIKEIEFSGLHIFQYSDREGTIASNM 345 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQS 437 ++D K +R L +E V + + +EVL+E+ + G+ G S +L+ Sbjct: 346 DGKIDAKTKKQRADRLDSLKQEMIVDSRKKYLEKSLEVLVEEE--KNGEYFGYSQNYLRV 403 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466 + K + ++I V++ V+ L E Sbjct: 404 KFRSDKKDLVNNLINVKVKCVENDILIAE 432 >gi|227872687|ref|ZP_03991017.1| possible 2-methylthioadenine synthetase [Oribacterium sinus F0268] gi|227841501|gb|EEJ51801.1| possible 2-methylthioadenine synthetase [Oribacterium sinus F0268] Length = 423 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 130/455 (28%), Positives = 227/455 (49%), Gaps = 53/455 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS--QGYERVNSMDD---ADLIVLNTCHIREKAAEKV 80 + +++S GC N D+ E + F Q Y + D+ A++ ++NTC A E+ Sbjct: 2 KLYLESLGCDKNRVDA---EKLLFELLQKYPGSSVTDEPSEAEIAIVNTCSFIGPAKEES 58 Query: 81 YSFLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY-RLPE 138 + L ++ KE G L ++VAGC+ + +EI + P ++ + + Y RL Sbjct: 59 IQCI-----LDLAQYKETGKLEKLIVAGCLVERYKDEIRKELPEIDEITSVKDYVKRLDH 113 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + R G++ Y+R +L I EGCDK+C++C++P Sbjct: 114 QMARVESGEK---------------------YSR------YLKIAEGCDKYCSYCIIPRL 146 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG S V++EAR L+ G E+ L+ Q + G L +K ++LL LSEI Sbjct: 147 RGHYRSIPKELVLEEARALVSEGAGELILVAQETTLY-GTDLYKKK-ALAELLAELSEIP 204 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L +R +P ++ LI+ + YL LP+Q SDRILK MNRR E ++ Sbjct: 205 NLQWIRILYCYPEEIEPELIREMKRNPKVCHYLDLPIQHASDRILKRMNRRTRKEELKEK 264 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I +R PDIA+ + I GFPGET++DF+ +D + ++ + + +F YS GT + M Sbjct: 265 IALLRKEMPDIALRTTIITGFPGETEEDFQEVLDFISEMRFDRLGAFPYSQEEGTKAAEM 324 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS---- 432 +Q+ E +K +RL + + +Q ++F A +G+ ++VL+ + +E+ +++ RS Sbjct: 325 EDQIPEKLKNQRLSQIME--LQQNIAFRKAEEQIGRKLKVLVCGYDEEEQRVLCRSYMDA 382 Query: 433 PWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGE 466 P + S + + + +G + ++ D + L GE Sbjct: 383 PDVDSYLYVFGEKKEVGSFLYAKVIDTEGYDLIGE 417 >gi|307200648|gb|EFN80756.1| CDK5 regulatory subunit-associated protein 1 [Harpegnathos saltator] Length = 1337 Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 123/421 (29%), Positives = 205/421 (48%), Gaps = 83/421 (19%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ + + YGCQMNV D+ + + ++GY++ M+ AD+++L TC IR+ A +KV++ L Sbjct: 70 QKVYFEIYGCQMNVNDTEIIWSILKARGYQQTKDMEGADIVLLITCSIRDNAEQKVWNKL 129 Query: 85 GRIRNLKNSRIKEGG-DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + ++N R K+ G + + + GC+A+ +IL + +V+V+ GP +Y LP L Sbjct: 130 EYLNVIRNKRRKKSGVSMKIGLLGCMAERLKTKILDKGKLVDVIAGPDSYKDLPRL---- 185 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC-VVPYTRGIE 202 L++ D + V L+ E T+ V+P Sbjct: 186 -------------------LAVTDS----ETAVNVVLSFDE------TYADVMP------ 210 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-----------------GKGLD---- 241 G+ E+TLLGQNVN++R KG Sbjct: 211 ------------------GIKEVTLLGQNVNSYRDLSQLQFVVPVGTGTHLAKGFKTVYK 252 Query: 242 GEK--CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 G+K F DLL +S I +R+R+T+ HP+D D ++ + + +HLP QSG+ Sbjct: 253 GKKGGLRFCDLLDKVSLIDPEMRVRFTSPHPKDFPDEVLHLIAERPNICKQIHLPAQSGN 312 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L M R +T Y ++ IR + PD+ +S+DFI GF GET+++F+ T+ L++++ Y Sbjct: 313 SAVLVRMRRGYTREAYLDLVHNIRDILPDVYLSADFIAGFCGETEEEFQDTLSLLEQVKY 372 Query: 360 AQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 A+ F YS R T + V++ VK ER+ + R + N A +GQ VL+ Sbjct: 373 NYAYMFAYSMREKTTAHRRYKDDVEQRVKIERVARMITLYRREAEKLNKAQIGQRQLVLV 432 Query: 419 E 419 E Sbjct: 433 E 433 >gi|291556571|emb|CBL33688.1| SSU ribosomal protein S12P methylthiotransferase [Eubacterium siraeum V10Sc8a] Length = 446 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 123/450 (27%), Positives = 213/450 (47%), Gaps = 26/450 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D+ M G++ VN AD++++NTC + A E+ + + Sbjct: 11 SLGCPKNQCDAELMLAKIAKAGFKIVNEAGLADVVIINTCGFIQSAKEEAIEEIMEAISR 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 KN I + ++V GC+A+ +++ P ++ VVG + E++ +RV+ Sbjct: 71 KNDGINKK----IIVTGCLAERYQKQMDEEFPEIDAVVGIAKNDDIVEIINSVMLDRRVI 126 Query: 151 DTDYSVEDKFE--RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + E +L Y A+L I +GC C++C +P RG SR + Sbjct: 127 TFGDKLCHNMEGDKLQSTLPHY-------AYLRIADGCSNKCSYCAIPLIRGKMRSRKME 179 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 +++EA+K +NGV E+ ++ Q+V A+ G+D +K DLL L +I G+ +R Sbjct: 180 NIIEEAKKFAENGVKELVIVAQDVTAY---GIDLYKKYALPDLLKQLCKIDGIKWIRLLY 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P M+D LI+ D ++ Y+ +P+Q + IL++M R R++ ++R P Sbjct: 237 CYPERMTDELIETIKTEDKVLNYIDIPIQHCNKEILRNMYRGGDEQSLRELFAKLRREIP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + + + I GFPGET++ F + V+ I + + F YS TP + M +QVDE + Sbjct: 297 GVVLRTTLITGFPGETEEQFSELAEFVNDIKFERLGCFAYSAEEDTPAAEMPDQVDEGER 356 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSK 443 R + + + + VG EV+ E + GRS P + ++ + Sbjct: 357 QRRADIITSEQEIRMGEYYAGMVGNTYEVVCEGFDRYSDMYFGRSMHFAPEIDGMIYFTS 416 Query: 444 NHN-----IGDIIKVRITDVKISTLYGELV 468 + IGD + V+ITDV + L GE V Sbjct: 417 AKDKGSLTIGDFVNVKITDVLENNLLGERV 446 >gi|269303354|gb|ACZ33454.1| RNA modification enzyme, MiaB family [Chlamydophila pneumoniae LPCoLN] Length = 421 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 122/443 (27%), Positives = 220/443 (49%), Gaps = 44/443 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLGR--IRN 89 GC++N Y+ D GY+ V +S ADL ++NTC + A GR +R Sbjct: 16 GCRVNQYEVQAYRDQLTILGYQEVLDSEIPADLCIINTCAVTASAESS-----GRHAVRQ 70 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 L ++ +VV GC+ +++ E +V + R+ Sbjct: 71 L----CRQNPTAHIVVTGCLGESDKEFFASLDRQCTLVSNKEK--------------SRL 112 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 ++ +S + F I ++ + AF+ +Q+GC+ FC++C++PY RG +SR + Sbjct: 113 IEKIFSYDTTFPEFKI----HSFEGKSRAFIKVQDGCNSFCSYCIIPYLRGRSVSRPAEK 168 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 ++ E ++D G E+ + G NV G DGE+ + + L+ + +I G+ R+R ++ Sbjct: 169 ILAEIAGVVDQGYREVVIAGINV----GDYCDGER-SLASLIEQVDQIPGIERIRISSID 223 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P D+++ L +A P HL +QSGS+ ILK MNR+++ ++ +++ R+ P Sbjct: 224 PDDITEDLHRAITSSRHTCPSSHLVLQSGSNSILKRMNRKYSRGDFLDCVEKFRASDPRY 283 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 A ++D IVGFPGE+D DF T+ +++ +G+ + SF +S R T Q+ V E Sbjct: 284 AFTTDVIVGFPGESDQDFEDTLRIIEDVGFIKVHSFPFSARRRTKAYTFDNQIPNQVIYE 343 Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH- 445 R L + K++ ++++ +G+ EVL+EK + +G SP+ + V Sbjct: 344 RKKYLAEVAKRVGQKEMMKR---LGETTEVLVEKVTGQVA--MGHSPYFEKVSFPVVGTV 398 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 I ++ VR+ V+ L GE+V Sbjct: 399 AINTLVSVRLDRVEEEGLIGEIV 421 >gi|294678991|ref|YP_003579606.1| MiaB family RNA modification enzyme [Rhodobacter capsulatus SB 1003] gi|294477811|gb|ADE87199.1| RNA modification enzyme, MiaB family [Rhodobacter capsulatus SB 1003] Length = 419 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 132/433 (30%), Positives = 208/433 (48%), Gaps = 37/433 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ G + +V+NTC + +A K IR L Sbjct: 8 TLGCRLNAYETEAMKELAAQAGL--------SGAVVVNTCAVTAEAVRKAKQ---EIRKL 56 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL-PELLERAR 144 +E ++V GC AQ E E + + VV + P+T+ L P+ + Sbjct: 57 A----RENPGAAIIVTGCAAQTEPETFAAMTEVTRVVGNHEKMQPETWAALAPKGADFIG 112 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +RV VD SV++ L +DG + R R A++ +Q GCD CTFC++P+ RG Sbjct: 113 ETERVMVDDILSVKETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPFGRGNSR 166 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S VV++ ++L+D G E+ L G ++ +W G L G ++ L + L RL Sbjct: 167 SVPAGVVVEQIKRLVDRGFAEVVLTGVDLTSW-GADLPGAPRMGDLVMRILRLVPDLARL 225 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ + D L+ A LMP+LHL +Q G D ILK M RRH + + R Sbjct: 226 RISSIDSIEADDNLMLAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIAFCEEAR 285 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +RP I +D I GFP ET++ F ++ LV+ G F YS R GTP + M +V Sbjct: 286 RLRPGIVFGADIIAGFPTETEEMFENSLRLVEDCGLTFLHVFPYSARKGTPAARM-PRVA 344 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 V +R L+ V A VGQ+ EVL E G +GR+ + V + + Sbjct: 345 GPVIKDRAARLRAAGDAALVRHLQAEVGQLREVLTE------GPRLGRTEYFTEVSFD-R 397 Query: 444 NHNIGDIIKVRIT 456 + G ++ +RI+ Sbjct: 398 DMPEGTVMSLRIS 410 >gi|241762301|ref|ZP_04760382.1| MiaB-like tRNA modifying enzyme YliG [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373204|gb|EER62834.1| MiaB-like tRNA modifying enzyme YliG [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 443 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 124/451 (27%), Positives = 211/451 (46%), Gaps = 42/451 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ S+GY + D+AD++++NTC + A E+ +G Sbjct: 15 SLGCPKALVDSERILTKLRSEGYNLSSQYDEADVVLVNTCGFIDSAKEESLDAIGEAMA- 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ E + I R P + + G Q Y E++ + Sbjct: 74 ENGR--------VIVTGCLGN-EADRIRERFPDILAITGAQQY---EEVVSAVHDAAPIE 121 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + Y + L + Y+ +L I EGC+ C+FC++P RG +SR + Sbjct: 122 ASPYVDLVPEQGLKLTPRHYS-------YLKISEGCNHRCSFCIIPSLRGDLVSRRADAI 174 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA KL+ G E+ ++GQ+ +A W+ + + K +DL+ L E+ Sbjct: 175 LREAEKLVAAGTKELLVIGQDSSAYGVDLRHQEYRWKDRMV---KADLTDLVRGLGELGA 231 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + + A G +++PYL +P Q S +LK M R + + Sbjct: 232 WVRLHYVYPYPHVDTLIPLMAEG---LILPYLDIPFQHASPSVLKRMKRPANEVKILDRL 288 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + PDIA+ S F+VGFPGET+ DF+ +D +D+ + +F++ G + Sbjct: 289 TKWREIVPDIALRSSFVVGFPGETEQDFQYLLDWLDEAQLDRVGAFRFEAVEGAAANAFD 348 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQ 436 V E VK ER L +K + + A +G+ I +I++ G G+ +P + Sbjct: 349 GAVPEEVKNERYQRLMEKAAQISEAKLQAKIGRDIATIIDRTDGEGGASGRSYADAPEID 408 Query: 437 SVV--LNSKNHNIGDIIKVRITDVKISTLYG 465 V ++ + IGDI+ +R+ D L+G Sbjct: 409 GEVHLRDADDLKIGDIVTIRVEDADEHDLFG 439 >gi|154249967|ref|YP_001410792.1| MiaB-like tRNA modifying enzyme YliG [Fervidobacterium nodosum Rt17-B1] gi|238065356|sp|A7HMK2|RIMO_FERNB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|154153903|gb|ABS61135.1| MiaB-like tRNA modifying enzyme YliG [Fervidobacterium nodosum Rt17-B1] Length = 431 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 135/447 (30%), Positives = 211/447 (47%), Gaps = 25/447 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + +V GC N D + G+E V+ ++DAD +V++TC A ++ + Sbjct: 5 KLYVIVLGCAKNEADFSLFKYHLKQLGHEVVDDVEDADGVVIDTCGFIVDAKQESIDTIL 64 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 ++K K+ D V V GC+ Q +++ P V+ G L E + + + Sbjct: 65 EFASIK----KQKPDFKVYVTGCLVQRYPKDLPLEIPEVDGWFGVIPPKNLAESINKTK- 119 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 K + D E FE D Y A++ I +GCD+ CTFC +P +G +SR Sbjct: 120 -KYITDPVAVYE--FEGRVDSDLPY-------AYVKIADGCDRACTFCTIPKFKGGFVSR 169 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L + E R LI+NG EI L+ Q+ + G L G K +LL +++I G +R Sbjct: 170 KLEDIEKEVRYLIENGKKEIVLVAQDTTGY-GVDLYG-KQMLPELLKRINDIDGNFWIRV 227 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 HP ++D ++K + ++ Y +P+Q SD ILK M R + E ++ D+IRS+ Sbjct: 228 MYMHPDHVTDEILKGFS-YEKVVKYFDIPIQHSSDNILKLMGRTKSTKELEELFDKIRSL 286 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P + + IVGFPGET DDF +D + I + + F YS N+ +V Sbjct: 287 YPQAVLRTSIIVGFPGETKDDFEQLIDFIRTIEFDRLGGFVYSDEEDAASYNLPNKVSLK 346 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLN 441 +RL L + E N VG++I+VL E+ + G ++GRS P + V Sbjct: 347 TAQKRLDTLMEVQAEISFLRNQRLVGKVIDVLFEE--EVNGVIIGRSYMDAPEVDGNVF- 403 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 K H I KV+IT+ L GELV Sbjct: 404 VKGHGINRFGKVKITEADTYDLEGELV 430 >gi|300087524|ref|YP_003758046.1| MiaB-like tRNA modifying enzyme [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527257|gb|ADJ25725.1| MiaB-like tRNA modifying enzyme [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 400 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 122/408 (29%), Positives = 201/408 (49%), Gaps = 39/408 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++ + GC++N +S + + GY ++ DAD++V+NTC + A K Sbjct: 3 RVYLATQGCKLNQAESESLRRGLEAVGYLLTDTAKDADIMVVNTCTVTNLADRKARQ--- 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 IR+ R+K G + V+V GC A+ + E + + VV + +PE+L F Sbjct: 60 SIRSA--GRVKPG--IKVIVTGCYAERQAESVGALPEVAKVVAMSEKDI-IPEILHELGF 114 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V T +I G R R +F+ IQ+GCD C +C+VP R + + Sbjct: 115 PPATVGT-----------AIATG---RTR---SFIKIQDGCDYRCAYCIVPTVRPRKSAV 157 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +V+DE R G E+ L G + +R + L+ ++ + + RLR Sbjct: 158 PVEKVIDEIRARRREGCREVVLTGTEIGEYRTGNT-----ALAGLIDAVLKETDIERLRI 212 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ PR+++ L+ + + + HL +QSGSD +L+ M RR+ EY + + IR V Sbjct: 213 SSLQPREITPELMACWRNPRMCR-HFHLSLQSGSDPVLRRMRRRYNTAEYAEALVAIRQV 271 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ A++SD I GFPGETD +F ++ ++K G+A+ F +S R GTP + M QVD Sbjct: 272 VPEAAVTSDIIAGFPGETDSEFADSLKFIEKCGFARLHVFPFSARPGTPAAGMEGQVDRR 331 Query: 386 V---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 + +RLL L E + F + G+ +VL E GK G+ G Sbjct: 332 TVRQRTDRLLALAV---ECEAEFRRSMSGRSFDVLFE--GKRNGQWEG 374 >gi|239833059|ref|ZP_04681388.1| MiaB-like tRNA modifying enzyme [Ochrobactrum intermedium LMG 3301] gi|239825326|gb|EEQ96894.1| MiaB-like tRNA modifying enzyme [Ochrobactrum intermedium LMG 3301] Length = 427 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 120/400 (30%), Positives = 199/400 (49%), Gaps = 26/400 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M+ + G + + D I+ NTC + +A + + + R Sbjct: 5 VVTFGCRLNTYESEVMKREADAAG---LGELKDG-AIIFNTCAVTAEAVRQARQAIRKAR 60 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142 +E + ++V GC AQ E + V++++G + +Y LP+ Sbjct: 61 -------RENPEARIIVTGCAAQTEADNFAAMDE-VDLILGNEEKLKSNSYRMLPDFGVN 112 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +F K V+ V + + VD R R AF+ +Q GCD CTFC++PY RG Sbjct: 113 -QFEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNS 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + VVD+ ++L+ NG E+ L G ++ ++ G L G + L+++ L R Sbjct: 167 RSVPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPGNLRLGKLVKTVLNQVPDLQR 225 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ + D L+ A + LMP+LHL +Q+G D ILK M RRH + + + + Sbjct: 226 LRLSSIDSIEADDDLMDAIANEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCETV 285 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RPDI +D I GFP ET++ F+ ++ +V++ G + F YS R GTP + M QV Sbjct: 286 RGLRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLSHLHVFPYSAREGTPAARM-PQV 344 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 + ER L+ + A G + +L+EK G Sbjct: 345 RREIVKERAARLRAEGDRAYKKHLGALNGTMQRLLVEKEG 384 >gi|77464514|ref|YP_354018.1| MiaB-like radical SAM protein [Rhodobacter sphaeroides 2.4.1] gi|77388932|gb|ABA80117.1| MiaB-like Radical SAM protein [Rhodobacter sphaeroides 2.4.1] Length = 425 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 131/435 (30%), Positives = 210/435 (48%), Gaps = 42/435 (9%) Query: 30 KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 + GC++N Y++ M+++ + G +D+A +V+NTC + +A K + R+R Sbjct: 7 STLGCRLNAYETEAMKELATAAG------VDNA--VVVNTCAVTAEAVRKAKQEIRRLR- 57 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLER 142 +E ++V GC AQ E P V+ V+G P T+ + P+L+ Sbjct: 58 ------RENPQATIIVTGCAAQTE-PATFSAMPEVDRVIGNTEKMQPATWAAMAPDLIGE 110 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +RV VD SV + L +DG + R R A++ +Q GCD CTFC++PY RG Sbjct: 111 T---ERVQVDDILSVRETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPYGRGN 161 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S VV++ R+L+D G E+ L G ++ +W G L ++ L + L Sbjct: 162 SRSVPAGVVVEQIRRLVDRGFAEVVLTGVDLTSW-GADLPAAPRLGDLVMRILRLVPDLA 220 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ + + L+ A LMP+LHL +Q G D ILK M RRH + + + Sbjct: 221 RLRISSIDSIEADEALMGAIATEARLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCEE 280 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R +RPDI +D I GFP ET+ F ++ LV++ G F +SPR GTP + M Q Sbjct: 281 ARRLRPDIVFGADIIAGFPTETEAAFANSLKLVEECGLTFLHVFPFSPRQGTPAARM-PQ 339 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + V ER L+ + ++ + G+ VL+E G +GR+ V Sbjct: 340 LAGPVIRERAAQLRALGEARLLAHLEGERGRTHRVLME------GPRLGRTEQFTEVAF- 392 Query: 442 SKNHNIGDIIKVRIT 456 + + G I+ +T Sbjct: 393 AADQPEGRILSATVT 407 >gi|325528907|gb|EGD05942.1| ribosomal protein S12 methylthiotransferase [Burkholderia sp. TJI49] Length = 453 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 134/477 (28%), Positives = 219/477 (45%), Gaps = 61/477 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 5 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A A G ++ P V V GP + + Sbjct: 64 IGEA-------LTENGK--VIVTGCLGAKASASGANLIEEVHPKVLAVTGPHAVGEVMQA 114 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + K D F L + G A+L I EGC+ CTFC++P R Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K + Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221 Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298 DL+ +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + + + + R + PD+ I S FI GFPGET++ F +D + + Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YSP G + + + ++V+ ER + E + VG+ ++VLI Sbjct: 337 LDRVGCFAYSPVEGASANELDGALPDDVREERRARFMEVAEEVSAKRMERKVGKTVKVLI 396 Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 397 DEVSAEGGIGRTAADAPEIAGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453 >gi|163796738|ref|ZP_02190696.1| tRNA 2-methylthioadenosine synthase-like protein [alpha proteobacterium BAL199] gi|159177992|gb|EDP62539.1| tRNA 2-methylthioadenosine synthase-like protein [alpha proteobacterium BAL199] Length = 430 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 125/401 (31%), Positives = 195/401 (48%), Gaps = 28/401 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V+++GC++N Y+S + + G + IV+NTC + +A + + R+ Sbjct: 15 VETFGCRLNAYESEVIRGHLDAAG--------KSGTIVVNTCAVTSEAERQARQSIRRL- 65 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFG 146 +R G + +VV GC AQ + R + I V VVG + + + A Sbjct: 66 ----ARENPGAE--IVVTGCAAQIDPA---RYAAIDGVTRVVGNEEKMQAGTWSDTAPPA 116 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V D E +S DG R R AF+ +Q+GCD CTFC++PY RG S Sbjct: 117 IHVTDIMEVRETAAHLVSEFDG---RAR---AFVQVQQGCDHRCTFCIIPYGRGNSRSVP 170 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + +V++ R L G EI L G +V ++ G L G + L+ + L RLR + Sbjct: 171 IGAIVEQVRALAAGGYREIVLTGVDVTSF-GGDLPGRPSLGQMMRRLLALVPELERLRLS 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P ++ + L + D LMP+LHL +Q+G D +LK M RRH + ++++R+R++R Sbjct: 230 SVDPVEIDEDLFRLIADEPRLMPHLHLSLQAGDDMVLKRMKRRHLRDDVFRLVERVRALR 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P A +D I GFP E+D F T L+ +G F YSPR GTP + M QV ++ Sbjct: 290 PGTAFGADVIAGFPTESDAMFENTAALLTDLGIQHLHVFPYSPRPGTPAARM-PQVPGDI 348 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 + R L+ S+ VG+ VLIE G +G+ Sbjct: 349 RKARAARLRDIGAANLESWTAGLVGRDDRVLIEVDGAGRGE 389 >gi|218670177|ref|ZP_03519848.1| putative 2-methylthioadenine synthetase (miaB-like) protein [Rhizobium etli GR56] Length = 155 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 76/120 (63%), Positives = 97/120 (80%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+K+YGCQMNVYDS RM D GYE M++ADL++LNTCHIREKAAEKVYS L Sbjct: 35 RKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSAL 94 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 GR+R +K + +G ++++ VAGCVAQAEGEEILRR+P V+VV+GPQTY+RLPE L RA+ Sbjct: 95 GRLREMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRAK 154 >gi|195335207|ref|XP_002034266.1| GM19985 [Drosophila sechellia] gi|194126236|gb|EDW48279.1| GM19985 [Drosophila sechellia] Length = 556 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 133/471 (28%), Positives = 227/471 (48%), Gaps = 53/471 (11%) Query: 18 VDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 + + ++P Q+ FVK++GC N DS M + GY R++ ++ADL +LN+C ++ Sbjct: 62 IHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGY-RLSGKEEADLWLLNSCTVKNP 120 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTY 133 + + RN S ++ G +VVAGCV Q +S +N V+G Q Sbjct: 121 SEDT-------FRNEIKSGMQNGK--YIVVAGCVPQGAP-----KSDYLNGLSVIGVQQI 166 Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN------RKRGVTAFLTIQEGCD 187 R+ E++E G V +++K + L G RK + ++I GC Sbjct: 167 DRVVEVVEETLKGHSV----QLLQNKKKVLGRRVAGAPLSLPKVRKNPLIEIISINSGCL 222 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247 CT+C + RG S +VV+ AR+ G CEI L ++ A+ G+ + + Sbjct: 223 NQCTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAY-GRDIGS---SL 278 Query: 248 SDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 +LL+ L E+ G+ Y H +++ + + +LH+PVQSGS Sbjct: 279 PELLWKLVEVIPENCMLRVGMTNPPYILEHLEEVAKVMQHPR-----VYSFLHVPVQSGS 333 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 D +L M R + ++ ++D +R P + I++D I GFP ET+DDF TM L K + Sbjct: 334 DSVLGEMKREYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRF 393 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVL 417 F ++ PR GTP + M E++ N+ +R K+L + S+ VG+I VL Sbjct: 394 PSLFINQFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAERVGEIYTVL 448 Query: 418 IEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + +K VG + + V+L +++ +G + VRIT ++ GE++ Sbjct: 449 VTEVSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVNVRITSASKFSMVGEIL 499 >gi|126463354|ref|YP_001044468.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides ATCC 17029] gi|126105018|gb|ABN77696.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides ATCC 17029] Length = 425 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 129/435 (29%), Positives = 207/435 (47%), Gaps = 42/435 (9%) Query: 30 KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 + GC++N Y++ M+++ + G + +V+NTC + +A K + R+R Sbjct: 7 STLGCRLNAYETEAMKELATAAGV--------GNAVVVNTCAVTAEAVRKAKQEIRRLR- 57 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLER 142 +E ++V GC AQ E P V+ V+G P T+ + P+L+ Sbjct: 58 ------RENPQATIIVTGCAAQTE-PATFSAMPEVDRVIGNTEKMQPATWAAMAPDLIGE 110 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +RV VD SV + L +DG + R R A++ +Q GCD CTFC++PY RG Sbjct: 111 T---ERVQVDDILSVRETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPYGRGN 161 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S VV++ R+L+D G E+ L G ++ +W G L ++ L + L Sbjct: 162 SRSVPAGVVVEQIRRLVDRGFAEVVLTGVDLTSW-GADLPAAPRLGDLVMRILRLVPDLA 220 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ + + L+ A LMP+LHL +Q G D ILK M RRH + + + Sbjct: 221 RLRISSIDSIEADEALMGAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCEE 280 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R +RPDI +D I GFP ET+ F ++ LV++ G F +SPR GTP + M Q Sbjct: 281 ARRLRPDIVFGADIIAGFPTETEAAFANSLKLVEECGLTFLHVFPFSPRKGTPAARM-PQ 339 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + V ER L+ + ++ + G+ VL+E G +GR+ V Sbjct: 340 LAGPVIRERAAQLRALGEARLLAHLEGERGRTHRVLME------GPRLGRTEQFTEVAF- 392 Query: 442 SKNHNIGDIIKVRIT 456 + + G I+ +T Sbjct: 393 AADQPEGRILSATVT 407 >gi|255080118|ref|XP_002503639.1| predicted protein [Micromonas sp. RCC299] gi|226518906|gb|ACO64897.1| predicted protein [Micromonas sp. RCC299] Length = 456 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 125/421 (29%), Positives = 210/421 (49%), Gaps = 33/421 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D M F+ G++ ++ +DAD I++NTC E A + + + Sbjct: 3 SLGCPKNTVDGEVMLGDLFANGFDIIDEHEDADAIIVNTCGFVEDAKNESVDAILAAAAM 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K + + G V+V GC+AQ EE+ P V+VV+G + Y LP L G+++ Sbjct: 63 KAEQEQGGKKKKVIVTGCLAQRYAEELADEMPEVDVVMGFENYKDLPNTL-----GEQLG 117 Query: 151 DTDYSVEDKFERLSIVDGGYN--------RKRGVT---AFLTIQEGCDKFCTFCVVPYTR 199 + D +R + G + RKR A+L + EGCD CTFC +P R Sbjct: 118 VETGAAADGAKRGRVRVGTASPPFRPEALRKRLTPQHYAYLRVAEGCDHKCTFCAIPGFR 177 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEI 257 G S+ +++EA+ L D G E+ L+ ++ N W K DG ++LL +L+ I Sbjct: 178 GKFRSKPWDPIIEEAKALADTGARELCLIAEDTNQWGMDLKASDGRG--LAELLEALAVI 235 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN---RRHTAYE 314 G+ +R ++P SD LI A D+ + Y+ +P+Q ++ L MN R+HT Sbjct: 236 DGVEWIRILYAYPSYFSDPLIDAIADIPQVAKYIDIPLQHITNLSLLRMNRPPRQHTEDL 295 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 ++ DRI P +A+ + FI GFPGET+++ M + + + +F YS GTP Sbjct: 296 LYKLRDRI----PGLALRTTFISGFPGETEEEHEDLMRFCREFKFERLGAFAYSEEDGTP 351 Query: 375 GSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 + +QV++ V + ++L+ Q+++ E F + VG+ ++V+I+ + E GR Sbjct: 352 AATYPDQVEQAVRDLRRDQLIAQQQQISE---DFAASRVGREVDVIIDGYNPEFDAWTGR 408 Query: 432 S 432 + Sbjct: 409 T 409 >gi|229588740|ref|YP_002870859.1| ribosomal protein S12 methylthiotransferase [Pseudomonas fluorescens SBW25] gi|229360606|emb|CAY47463.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 446 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 139/469 (29%), Positives = 228/469 (48%), Gaps = 61/469 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V++ DAD++V+NTC + A + Sbjct: 10 PKVGFV-SLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEV 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ EG I P V V GPQ Y Sbjct: 69 IGE-------AIKENGK--VIVTGCMGVEEGA-IRNVHPSVLAVTGPQQY---------- 108 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 109 ---EQVVNAVHDVVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSM 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A W G + K Sbjct: 166 RGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPV---KTRM 222 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 ++L +LS + VRL Y +P + A G ++PYL +P Q S ++LK+M Sbjct: 223 TELCEALSSLGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKVLKAMK 279 Query: 308 RRHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 R A+E + + I R + P++ I S FIVGFPGET++DF+ +D + + + F Sbjct: 280 R--PAFEDKTLARIKNWREICPELIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCF 337 Query: 366 KYSPRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 +YSP G P + + L V ++VK ER + Q+ + ++ +G+ IEVLI++ Sbjct: 338 QYSPVEGAPANLLDLAVVPDDVKQDRWERFMAHQQAISSARLQLR---IGKEIEVLIDEV 394 Query: 422 GKEK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466 ++ G+ +P + V ++ GD + +TD L+ E Sbjct: 395 DEQGAVGRCFFDAPEIDGNVFIDDASGLKPGDKVWCTVTDADEYDLWAE 443 >gi|242280283|ref|YP_002992412.1| MiaB-like tRNA modifying enzyme [Desulfovibrio salexigens DSM 2638] gi|242123177|gb|ACS80873.1| MiaB-like tRNA modifying enzyme [Desulfovibrio salexigens DSM 2638] Length = 429 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 204/391 (52%), Gaps = 33/391 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 V ++F++ + GC++N Y+S + + + GYE+ + +A I++N+C + + A + Sbjct: 4 VMKKFWITTLGCKINQYESESVRERWLRMGYEQAENDAEAHEIIINSCAVTQAALRDLRQ 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + I N R EG +++AGC AQ +E+ + +V+ PQ R ELL Sbjct: 64 TVRGI----NRRNPEGK---IIIAGCAAQVFAKELAELPGVADVI--PQE--RKFELL-- 110 Query: 143 ARFGKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 ++ D S +D F+ I D Y R R V + +Q+GC CT+C+VP TRG Sbjct: 111 -----KLEDGPESTDDTTIFQPFEIDD--YERSRAV---VKVQDGCSHRCTYCIVPITRG 160 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS----- 255 +SR++ V+ E +L+ G E+ + G N++ + G+ + EK F DL+ + Sbjct: 161 PSVSRAVDDVLKEISRLLAAGFREMIISGINLSHY-GREFE-EKIDFWDLMERIEDEFGQ 218 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 E G RLR ++ P + + ++ ++ P LHL +QSG ++LK M R H E Sbjct: 219 EWGGRARLRISSLEPGQLKERALEIFAKSKLICPQLHLSLQSGDRQVLKRMGRGHYKPED 278 Query: 316 RQI-IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + +D+++ V P + +D + GFPGET+++F T++ K+ + A F YS R GT Sbjct: 279 VLVFLDKLKEVWPVFGLGADILTGFPGETEEEFNNTLEFCRKLPLSYAHVFPYSIRPGTA 338 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSF 405 ++M Q+D K ER L++ + E++ F Sbjct: 339 AASMKGQLDGPTKKERGRILRELVEEKKQEF 369 >gi|315231263|ref|YP_004071699.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase [Thermococcus barophilus MP] gi|315184291|gb|ADT84476.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase [Thermococcus barophilus MP] Length = 424 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 134/449 (29%), Positives = 225/449 (50%), Gaps = 36/449 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R +++YGC N D+ ME + + GYE V+ +D AD +++NTC +++ Sbjct: 2 RVHIETYGCTRNKADAEIMEALLVNAGYEIVD-LDSADYVIVNTCAVKDPT--------- 51 Query: 86 RIRNLKNSRIKEGGDL--LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 N RIKE D V+V GC+ E I R V+ ++G ++ R+ E +E A Sbjct: 52 --ENHMRKRIKELLDAGKKVIVTGCLPHINIEAIDER---VSAILGVKSINRITEAIELA 106 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G ++VD + DK E + K V + I EGC CT+C + RGI Sbjct: 107 ERGVKLVDVEQRGIDKLELPRM------WKSKVVFVVPISEGCLNACTYCATRFARGILK 160 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S S ++V ++ + G EI L ++ + G D ++LL L+ I+G R+ Sbjct: 161 SYSPEKIVRWVKEALAKGYKEIQLSSEDTGCY---GFDI-GTNLAELLDELTSIEGEFRI 216 Query: 264 RYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R +P + D LI A+ D + + +LHLPVQSG + IL+ M R +T ++ I+ Sbjct: 217 RVGMMNPNHVIKFLDELIDAYKD-EKIYKFLHLPVQSGDNEILRKMGRTYTVEDFETIVK 275 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R P++ +++D IVGFPGE+++ F+ T++L+ ++ + ++SPR GT + M + Sbjct: 276 AFRKEFPELNLNTDIIVGFPGESEEAFQNTVELIKRVKPDKINVSRFSPRPGTLAARMPD 335 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH-GKEKGKLVGRSPWLQSVV 439 Q+ ER L + N VG+ E+L+ H +KG + GR+ + ++ Sbjct: 336 QIVGWRAKERSRYLHRLRLAISYEINQKYVGR--ELLVLTHGEGKKGGVEGRTMNYKEII 393 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 L IG+ +KV++T + L GEL+ Sbjct: 394 L--PEAPIGEFVKVKVTKATATYLMGELI 420 >gi|182680305|ref|YP_001834451.1| MiaB-like tRNA modifying enzyme [Beijerinckia indica subsp. indica ATCC 9039] gi|182636188|gb|ACB96962.1| MiaB-like tRNA modifying enzyme [Beijerinckia indica subsp. indica ATCC 9039] Length = 435 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 133/442 (30%), Positives = 204/442 (46%), Gaps = 36/442 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S+GC++N ++ M + G+E +L+++N+C + +A + + R++ Sbjct: 14 SFGCRLNFVEAETMRRAAKAAGFE--------NLVIVNSCAVTAEATRQTRQAIRRVK-- 63 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGKRV 149 +E + +VV GC A+ E E R P V +V+G L + + Sbjct: 64 -----REQPEAKIVVTGCAAETEPER-FRAMPEVGLVLGNARKTEAATWLALKHQASDLP 117 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 +D ++ RLS G + R AFL +Q GCD C+FC++P RG S L Sbjct: 118 LDAPHAEALHRPRLSPQAGTEDHTR---AFLAVQNGCDHRCSFCIIPQGRGSSRSVPLDD 174 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRYTTS 268 + AR L G EI L G ++ ++ D + DL+ L E+ L RLR ++ Sbjct: 175 AIAMARDLAARGFLEIVLTGVDLTSYGSDLPDVPR--LGDLVRRILREVPSLPRLRLSSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 + L++ + + LMP LHL +Q+GSD ILK M RRH + + +R +RPD Sbjct: 233 DCIEADPVLVRCFAEEERLMPSLHLSLQAGSDLILKRMQRRHGRTDAIRFCAELRRLRPD 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 IA S+D I GFP ET+ F T+DLVD G F +S R GTP + M V + Sbjct: 293 IAFSADLIAGFPTETEAQFTDTLDLVDACGLTSLHVFPFSARPGTPAARM-PAVAPTIVK 351 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI- 447 ER L++K S VG +L E+ G + R+ V L HNI Sbjct: 352 ERARRLREKGTLALASHLGTHVGHRRRLLSERGG------LARTEDFAPVRL----HNIA 401 Query: 448 -GDIIKVRITDVKISTLYGELV 468 G +++ IT L G +V Sbjct: 402 PGRLVEALITGSDGEVLQGAIV 423 >gi|330807856|ref|YP_004352318.1| tRNA modifying protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375964|gb|AEA67314.1| Conserved hypothetical protein; putative tRNA modifying protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 446 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 138/471 (29%), Positives = 227/471 (48%), Gaps = 61/471 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V++ DAD++V+NTC + A + Sbjct: 10 PKVGFV-SLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEV 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ EG I P V V GPQ Y Sbjct: 69 IGEA-------IKENGK--VIVTGCMGVEEGN-IRNVHPSVLSVTGPQQY---------- 108 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 109 ---EQVVNAVHDVVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSM 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR + V+DEA++L+ GV E+ ++ Q+ +A W G + K Sbjct: 166 RGKLVSRPVGDVLDEAQRLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGAPV---KTRM 222 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 ++L +LS + VRL Y +P + A G ++PYL +P Q S ++LK+M Sbjct: 223 TELCEALSTLGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKVLKAMK 279 Query: 308 RRHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 R A+E + + I R + PD+ I S FIVGFPGET++DF+ +D + + + F Sbjct: 280 R--PAFEDKTLARIKNWREICPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCF 337 Query: 366 KYSPRLGTPGSNMLEQVDENV----KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 +YSP G P +++ V + + ER + Q+ + ++ +G+ IEVL+++ Sbjct: 338 QYSPVEGAPANDLDLDVVPDDVKQDRWERFMAHQQAISSARLQMR---IGREIEVLVDEV 394 Query: 422 GKEK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ G+ +P + V N N GD + ++TD L+ E + Sbjct: 395 DEQGAVGRCFFDAPEIDGNVFIDNGSNLKPGDKVWCKVTDADEYDLWAEQI 445 >gi|229815230|ref|ZP_04445566.1| hypothetical protein COLINT_02276 [Collinsella intestinalis DSM 13280] gi|229809240|gb|EEP45006.1| hypothetical protein COLINT_02276 [Collinsella intestinalis DSM 13280] Length = 427 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 124/429 (28%), Positives = 204/429 (47%), Gaps = 27/429 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V + GC++N +S R+ G+ V+ D+AD+IV+NTC + +A K + Sbjct: 8 VVNLGCRVNRVESDRITSDLVGAGFSLVD-QDEADIIVINTCAVTGEAESKTRKAVRHAL 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L I VVV GCV E+ SP V P ++ AR Sbjct: 67 GLPREPI-------VVVTGCVVNLHPSELTDLSPRV---------IAQPSKIDVARTAAD 110 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + E + D + GV +Q+GC+ C++C+V RG E S ++ Sbjct: 111 AAGLPARTVNLGEGHDLADLLGRSRLGVK----VQDGCNNRCSYCIVWKARGPERSVPVA 166 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V+++ R+ G+ E+ L G N+ A+ G +LL + E + ++R ++ Sbjct: 167 SVLEQVRRAERAGIPEVVLTGVNLGAYDGVDASDSHVEIDELLDIILEQTNIPQVRLSSL 226 Query: 269 HPRDMSDCLIKAH-GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P D+ D LI A + + P+LHLP+QSG L+ MNR +TA +Y ++DRIR+ P Sbjct: 227 EPMDVHDRLIDAMVAGGERVAPFLHLPLQSGCTATLERMNRPYTAEQYEAMVDRIRTKLP 286 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + AIS D I GFPGETD++F + L +++G+++ F+YS R GTP + QV V Sbjct: 287 NAAISCDIIAGFPGETDEEFAESRALCERVGFSRMHVFRYSARPGTPAATAPGQVAPEVM 346 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447 A R L+ + A +G ++E +G L + + +V ++ Sbjct: 347 AARSSELRHVAESTSQADARARIGACETAVLEF--GNRGTL---GSFHRVIVDDAGTDRT 401 Query: 448 GDIIKVRIT 456 G +++V+IT Sbjct: 402 GQLVRVKIT 410 >gi|157411395|gb|ABV54352.1| putative FeS oxidoreductase [Pseudomonas stutzeri] Length = 441 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 141/471 (29%), Positives = 227/471 (48%), Gaps = 59/471 (12%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP FV S GC DS R+ +GY+ V S +DAD++V+NTC + A + Sbjct: 5 VPSVGFV-SLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAESLD 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G I E G V+V GC+ E I P V V GPQ Y ++ + Sbjct: 64 AIGE-------AIAENGK--VIVTGCMGVDENN-IRGVHPSVLAVTGPQQYEQVVNAVHE 113 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 S+E D F L G R A+L I EGC+ C+FC++P RG Sbjct: 114 V--------VPPSIEHDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCIIPSMRGK 164 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +SR + V+ EA +L+ GV EI ++ Q+ +A W G+ + K +L Sbjct: 165 LVSRPVGDVLSEAERLVKAGVKEILVISQDTSAYGVDLKYKLDFWDGQPV---KTRMLEL 221 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L ++ VRL Y +P + A G ++PYL +P Q S ++LK+M R Sbjct: 222 CEALGKMGVWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKAMKR-- 276 Query: 311 TAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 A+E + + I + R + P++ I S FIVGFPGET++DF+ +D + + + F+YS Sbjct: 277 PAFEDKTLARIQKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYS 336 Query: 369 PRLGTPGSNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 P G P M LE V + +K +R + Q+ + ++ VG+ ++VLI++ ++ Sbjct: 337 PVDGAPAEAMGLEPVPDEIKQDRWDRFMAHQQAISAARLQLK---VGREMDVLIDEVDED 393 Query: 425 KGKLVGRSPWLQS-------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +GRS W + V +++ GD ++VR+T+ L+ E++ Sbjct: 394 GA--IGRS-WADAPEIDGMVYVDSAQPLQPGDKVRVRVTNADEYDLWAEVI 441 >gi|15836008|ref|NP_300532.1| hypothetical protein CPj0477 [Chlamydophila pneumoniae J138] gi|16752565|ref|NP_444827.1| hypothetical protein CP0277 [Chlamydophila pneumoniae AR39] gi|33241829|ref|NP_876770.1| hypothetical protein CpB0496 [Chlamydophila pneumoniae TW-183] gi|14916790|sp|Q9Z874|Y477_CHLPN RecName: Full=Putative methylthiotransferase CPn_0477/CP_0277/CPj0477/CpB0496 gi|7189201|gb|AAF38135.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39] gi|8978847|dbj|BAA98683.1| hypothetical protein [Chlamydophila pneumoniae J138] gi|33236338|gb|AAP98427.1| hypothetical protein CpB0496 [Chlamydophila pneumoniae TW-183] Length = 421 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 122/443 (27%), Positives = 219/443 (49%), Gaps = 44/443 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLGR--IRN 89 GC++N Y+ D GY+ V +S ADL ++NTC + A GR +R Sbjct: 16 GCRVNQYEVQAYRDQLTILGYQEVLDSEIPADLCIINTCAVTASAESS-----GRHAVRQ 70 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 L ++ +VV GC+ +++ E +V + R+ Sbjct: 71 L----CRQNPTAHIVVTGCLGESDKEFFASLDRQCTLVSNKEK--------------SRL 112 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 ++ +S + F I ++ + AF+ +Q+GC+ FC++C++PY RG +SR + Sbjct: 113 IEKIFSYDTTFPEFKI----HSFEGKSRAFIKVQDGCNSFCSYCIIPYLRGRSVSRPAEK 168 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 ++ E ++D G E+ + G NV G DGE+ + + L+ + +I G+ R+R ++ Sbjct: 169 ILAEIAGVVDQGYREVVIAGINV----GDYCDGER-SLASLIEQVDQIPGIERIRISSID 223 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P D+++ L +A P HL +QSGS+ ILK MNR+++ ++ +++ R+ P Sbjct: 224 PDDITEDLHRAITSSRHTCPSSHLVLQSGSNSILKRMNRKYSRGDFLDCVEKFRASDPRY 283 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 A ++D IVGFPGE+D DF T+ +++ +G+ + SF +S R T Q+ V E Sbjct: 284 AFTTDVIVGFPGESDQDFEDTLRIIEDVGFIKVHSFPFSARRRTKAYTFDNQIPNQVIYE 343 Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH- 445 R L + K++ ++++ +G+ EVL+EK + G SP+ + V Sbjct: 344 RKKYLAEVAKRVGQKEMMKR---LGETTEVLVEKVTGQVA--TGHSPYFEKVSFPVVGTV 398 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 I ++ VR+ V+ L GE+V Sbjct: 399 AINTLVSVRLDRVEEEGLIGEIV 421 >gi|154244369|ref|YP_001415327.1| MiaB-like tRNA modifying enzyme [Xanthobacter autotrophicus Py2] gi|154158454|gb|ABS65670.1| MiaB-like tRNA modifying enzyme [Xanthobacter autotrophicus Py2] Length = 437 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 132/416 (31%), Positives = 201/416 (48%), Gaps = 57/416 (13%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S+GC++N + + ++G ER +V NTC + +A + Sbjct: 22 VVSFGCRLNALEGDGIARAATAEGLERT--------LVFNTCAVTGEAVRQARQ------ 67 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR---- 144 +E DL V+V GC AQ + + R V++V+G LP R Sbjct: 68 -AIRRARREDPDLRVIVTGCAAQTDPQAFARMDE-VDLVLG-NADKTLPAAWATTRAALD 124 Query: 145 FG----KRVVDTDYS--------VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 FG ++V D S + D+FE G+ R AF+ +Q GCD CTF Sbjct: 125 FGIGAEQKVRVQDISAVRAATPHLADRFE-------GHTR-----AFVEVQNGCDHRCTF 172 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 C++P+ RG S + VVD+ R+L+ NG E+ L G ++ A+ G L G T L+ Sbjct: 173 CIIPFGRGPSRSVPMGAVVDQVRRLVANGHREVVLTGVDLTAY-GADLPGAP-TLGRLVR 230 Query: 253 S-LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 S L+ + L RLR ++ + D L++A + + LMP+LHL +Q+G D ILK M RRH+ Sbjct: 231 SVLTGVPDLPRLRLSSIDAVEADDELMRALAEEERLMPHLHLSLQAGDDLILKRMKRRHS 290 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I +R RPD+ + +D I GFP ET++ RAT +D+ G A F +S R Sbjct: 291 RAQALDFISALRRARPDVVLGADIIAGFPTETEEQARATRAFLDEAGLAFVHVFPFSARP 350 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF----NDACVGQIIEVLIEKHGK 423 GT + M Q+ V AER ++LRE + VG+ +VL+E G+ Sbjct: 351 GTAAARM-PQLPAGVVAER----ARRLRETAADLLRRHLASEVGRRRQVLVEAGGR 401 >gi|301064131|ref|ZP_07204578.1| ribosomal protein S12 methylthiotransferase RimO [delta proteobacterium NaphS2] gi|300441751|gb|EFK06069.1| ribosomal protein S12 methylthiotransferase RimO [delta proteobacterium NaphS2] Length = 447 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 136/454 (29%), Positives = 220/454 (48%), Gaps = 26/454 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF+ S GC N DS M + GYE V+ ++ A +V+NTC ++A ++ + Sbjct: 8 FFI-SLGCAKNRVDSEHMLGILKRDGYEPVDEIEKAGCVVINTCGFLQEAVQEAIDTI-- 64 Query: 87 IRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 L +R K+ G L +VVAGC Q G ++ + P V+ +G +R+ ++LE Sbjct: 65 ---LDAARFKKRGTLKKLVVAGCFVQRYGYKLRKEIPEVDGWLGTGEIHRIADVLEGDSE 121 Query: 146 GKRVVDTDYSVEDKFER-LSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGI 201 G+ SV R + D R R TA+L I EGC C++C++P RG Sbjct: 122 GE-------SVPMHISRPVFPADHCLPRIRTTPFYTAYLRIAEGCANRCSYCLIPKLRGP 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 SR++ ++ EA ++ GV EI L+ Q+ + + G+ + GE+ S LL LS I+G Sbjct: 175 FRSRAMDALLLEASEMASEGVREINLVAQDTSRY-GEDIYGERRIMS-LLEGLSLIEGFQ 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R HP +++ + + + + PYL LP Q ILK+M R ++ Sbjct: 233 WIRLLYFHPARLTETFLDFIDENERIAPYLDLPFQHCHPAILKAMRRDPENNTPWDLMTM 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ + I I + +VGFPGET++ F + + V+ + F +SP GT + E Sbjct: 293 IRNRKQRIHIRTSLMVGFPGETEEMFESLCNFVEMARFDHLGVFVFSPEEGTSAFRLPET 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQ 436 V + ER L K N A VG+++ VLIE E +G+ G +P + Sbjct: 353 VAHEIALERQKMLMKLQAGISKRLNQAKVGEVLPVLIEGESTETDLLLEGRTAGMAPDVD 412 Query: 437 S-VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 S V++N G+I+ V IT+ L G +++ Sbjct: 413 SRVLINDGEGRAGEIMPVLITEAHEYDLVGRILM 446 >gi|289192765|ref|YP_003458706.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22] gi|288939215|gb|ADC69970.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22] Length = 415 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 129/458 (28%), Positives = 229/458 (50%), Gaps = 59/458 (12%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + +V+ YGC +N D+ +++ G+E +++A++ ++NTC +R + ++ + Sbjct: 2 KVYVEGYGCVLNTADTEIIKNSLREHGFEITEDLEEANIAIINTCVVRLETENRMIYRIN 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGE-----------EILRRSPIVNVVVGPQTYY 134 ++NL VV+AGC+ +A E E R I+ + + +Y Sbjct: 62 ELKNLGKE---------VVIAGCLPKALKEKVKGFLHIYPREAHRAGEILKDYI--EKHY 110 Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 R+P + E D + ++ K + L+ + + L I EGC C++C+ Sbjct: 111 RMPYIEE---------DINKTLYKKLDYLT---------PSLISPLPICEGCIGNCSYCI 152 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYS 253 V RG IS ++V++A++LI+ G + + Q+ + G D G+ ++LL Sbjct: 153 VKIARGNLISYPREKIVNKAKELINKGAKCLLITAQDTACY---GFDIGD--NLANLLND 207 Query: 254 LSEIKGLVRLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L++I+G +R H ++ D LI+ + D D + +LHLP+QSG D ILK M R + Sbjct: 208 LTQIEGEFIMRVGMMHAKNAELILDELIEVYKD-DKVGKFLHLPLQSGDDEILKRMKRGY 266 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 T E++ I++ R ++ ++D IVGFPGET++ F+ T++++ ++ KYS R Sbjct: 267 TVDEFKDIVNEFRRKIKNLCFTTDIIVGFPGETEEQFQNTLEVLKELKPDYIHGAKYSQR 326 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 GT + M +QVD ++ +R L K RE N VG+ + VLI GK G Sbjct: 327 KGTEAAKM-KQVDTKIRKQRSEILDKLRRELSYLNNKKYVGKTMRVLILDEGK------G 379 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + V+ + IG+ KV+ITD K L GE++ Sbjct: 380 YTDNFK--VVKFEGGEIGEFRKVKITDAKTFGLRGEII 415 >gi|291546206|emb|CBL19314.1| SSU ribosomal protein S12P methylthiotransferase [Ruminococcus sp. SR1/5] Length = 365 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 117/362 (32%), Positives = 187/362 (51%), Gaps = 28/362 (7%) Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---KRVVDTDYSVEDKFERLSI 165 +AQ +EI+ P V+ V+G +Y + + LE A G + D DY + +R+ Sbjct: 1 MAQRYQKEIIEEVPEVDAVLGTTSYGDIVKALEEAVAGNHFEEFRDIDYLPDTGSKRVLT 60 Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225 G + +L I EGCDK CT+C++P RG S + +++ +A + + GV E+ Sbjct: 61 TGGHF-------GYLKIAEGCDKHCTYCIIPKLRGKFRSVPMERLIAQAEDMAEQGVKEL 113 Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285 L+ Q + GK L G+K + LL L EI+G+ +R +P ++ D LI+ D Sbjct: 114 ILVAQETTVY-GKDLYGKK-SLHILLKKLCEIRGIRWIRILYCYPEEIYDELIETIRDEK 171 Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345 + YL +P+Q SDRILK M RR + E I+ ++R PDI + + I GFPGET++ Sbjct: 172 KICHYLDIPIQHASDRILKRMGRRTSKQELIDIVGKLRKEIPDIVLRTTLITGFPGETEE 231 Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQ 402 D + VD++ + + F YSP TP + M +QV E VK ER L+ LQ Q+ Sbjct: 232 DHEELKEFVDEMEFDRLGVFTYSPEENTPAAEMADQVPEEVKEERRDELMELQ-----QE 286 Query: 403 VSFNDAC--VGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHNI--GDIIKVR 454 +S++ +GQ + V+IE ++ +GR+ P + + + GD KVR Sbjct: 287 ISYDRGQDRIGQELLVMIEGKVADESAYIGRTYGDAPKVDGYIFVQTGELLMTGDFAKVR 346 Query: 455 IT 456 +T Sbjct: 347 VT 348 >gi|124006098|ref|ZP_01690934.1| conserved hypothetical protein [Microscilla marina ATCC 23134] gi|123988275|gb|EAY27928.1| conserved hypothetical protein [Microscilla marina ATCC 23134] Length = 438 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 126/432 (29%), Positives = 214/432 (49%), Gaps = 22/432 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F S+GY++V+ D D+ ++NTC + A +K R + Sbjct: 8 TLGCKLNFSETSTITRQFESRGYKKVDFNDSPDIFIINTCSVTANADKKC-------RKV 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--- 147 K D V + GC AQ + +EI P V+ V+G +RL +LL F K Sbjct: 61 VKEAKKISPDGYVAIIGCYAQLKPKEI-SNIPGVDAVLGASEKFRLLDLL--GTFVKPAQ 117 Query: 148 -RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V+ + + D F + +R R FL +Q+GC+ C+FC +P RG S S Sbjct: 118 PEVLVQEVTNADTFAHSHSMG---DRTR---TFLKVQDGCNYNCSFCTIPLARGKSRSDS 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + ++ A K+ V E+ L G N+ + G K F DL+ +L E+ GL R+R + Sbjct: 172 IENIIASAHKIGQTEVKEVVLTGVNIGDF-GIQEGRRKERFIDLVKALDEVDGLERIRIS 230 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P +S+ +I +P+ H+P+QSGS++ILK+M RR+ Y +++I+ + Sbjct: 231 SIEPNLLSNDVIAFTAQSKRFVPHFHIPLQSGSNKILKAMRRRYERGLYVDRVNKIKELM 290 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P I D IVGFPGET++DF T + ++++ + F YS R T + V + Sbjct: 291 PHCCIGVDVIVGFPGETEEDFLDTYNFLNELDISYLHVFTYSERANTHALEIKSVVPKEE 350 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 +A+R L +++ F + +G+ VL EK E G++ G + V Sbjct: 351 RAKRSKMLHILSDKKRRYFYEQQLGKEYTVLFEKDINE-GQMEGFTENYVRVTAKYDPLL 409 Query: 447 IGDIIKVRITDV 458 I ++ KVR++ + Sbjct: 410 INELKKVRLSHI 421 >gi|256045537|ref|ZP_05448420.1| MiaB-like tRNA modifying enzyme [Brucella melitensis bv. 1 str. Rev.1] gi|256112265|ref|ZP_05453186.1| MiaB-like tRNA modifying enzyme [Brucella melitensis bv. 3 str. Ether] gi|260562847|ref|ZP_05833333.1| elongator protein 3 [Brucella melitensis bv. 1 str. 16M] gi|265991963|ref|ZP_06104520.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993696|ref|ZP_06106253.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|260152863|gb|EEW87955.1| elongator protein 3 [Brucella melitensis bv. 1 str. 16M] gi|262764677|gb|EEZ10598.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263003029|gb|EEZ15322.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 427 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 127/432 (29%), Positives = 210/432 (48%), Gaps = 34/432 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S M+ + G + ++ D I+ NTC + +A + + + R Sbjct: 7 TFGCRLNTYESEVMKREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144 +E D ++V GC AQ E + V++V+G + +Y LP+ + Sbjct: 61 -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDFGVN-Q 113 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 F K V+ V + + VD R R AF+ +Q GCD CTFC++PY RG S Sbjct: 114 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 168 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + VVD+ ++L+ NG E+ L G ++ ++ G L + L+++ L RLR Sbjct: 169 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPSNLRLGKLVKTVLAQVPDLQRLR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ + + L++A LMP+LHL +Q+G D ILK M RRH + + R+ Sbjct: 228 LSSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +RPDI +D I GFP ET++ F+ ++ +V++ G F YSPR GTP + M QV Sbjct: 288 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 346 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + ER L+ + +A G +L+EK G V R+ ++ Sbjct: 347 EIVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQG- 399 Query: 445 HNIGDIIKVRIT 456 N G+II+ +T Sbjct: 400 -NAGEIIERIVT 410 >gi|163737877|ref|ZP_02145293.1| MiaB-like tRNA modifying enzyme [Phaeobacter gallaeciensis BS107] gi|161388493|gb|EDQ12846.1| MiaB-like tRNA modifying enzyme [Phaeobacter gallaeciensis BS107] Length = 421 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 117/397 (29%), Positives = 191/397 (48%), Gaps = 31/397 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ G + + +V+NTC + +A K + ++R Sbjct: 9 TLGCRLNAYETEAMKELSQQAGLQ--------NAVVVNTCAVTAEAVRKARQEIRKLR-- 58 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL---PELLER 142 +E + ++V GC AQ E E + V+ + QT+ ++ P+ + Sbjct: 59 -----RENPEAPIIVTGCAAQTEPETFAAMDEVTQVIGNTEKMQAQTWQQIAKGPDFIGT 113 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K VD SV + L +DG R R A++ +Q GCD CTFC++PY RG Sbjct: 114 TE--KVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNS 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S VVD+ ++L+D G E+ L G ++ +W G L ++ L + L R Sbjct: 167 RSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPATPKLGDLVMRILKLVPDLPR 225 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ D L++A LMP+LHL +Q G D ILK M RRH + + + Sbjct: 226 LRISSIDSIEVDDNLMQAIATEPRLMPHLHLSLQHGDDLILKRMARRHLRDDAIRFCEEA 285 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RP++ +D I GFP ETD F ++ LV F YS R GTP + + QV Sbjct: 286 RKLRPEMTFGADIIAGFPTETDAHFENSLKLVSDCDLTWLHVFPYSKREGTPAARIPSQV 345 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 + + ER L+ Q + A VG+ ++L+E Sbjct: 346 NGPLIKERAARLRAAGDAQVQTHLTAAVGKAHQILME 382 >gi|17986416|ref|NP_539050.1| Fe-S oxidoreductase [Brucella melitensis bv. 1 str. 16M] gi|17982010|gb|AAL51314.1| fe-s oxidoreductase [Brucella melitensis bv. 1 str. 16M] Length = 447 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 127/432 (29%), Positives = 210/432 (48%), Gaps = 34/432 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S M+ + G + ++ D I+ NTC + +A + + + R Sbjct: 27 TFGCRLNTYESEVMKREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 80 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144 +E D ++V GC AQ E + V++V+G + +Y LP+ + Sbjct: 81 -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDFGVN-Q 133 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 F K V+ V + + VD R R AF+ +Q GCD CTFC++PY RG S Sbjct: 134 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 188 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + VVD+ ++L+ NG E+ L G ++ ++ G L + L+++ L RLR Sbjct: 189 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPSNLRLGKLVKTVLAQVPDLQRLR 247 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ + + L++A LMP+LHL +Q+G D ILK M RRH + + R+ Sbjct: 248 LSSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARA 307 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +RPDI +D I GFP ET++ F+ ++ +V++ G F YSPR GTP + M QV Sbjct: 308 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 366 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + ER L+ + +A G +L+EK G V R+ ++ Sbjct: 367 EIVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQG- 419 Query: 445 HNIGDIIKVRIT 456 N G+II+ +T Sbjct: 420 -NAGEIIERIVT 430 >gi|254512588|ref|ZP_05124654.1| MiaB-like tRNA modifying enzyme [Rhodobacteraceae bacterium KLH11] gi|221532587|gb|EEE35582.1| MiaB-like tRNA modifying enzyme [Rhodobacteraceae bacterium KLH11] Length = 418 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 131/439 (29%), Positives = 209/439 (47%), Gaps = 38/439 (8%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P +F + GC++N Y++ M+++ G +D +V+NTC + +A K Sbjct: 3 PPKF--STLGCRLNAYETEAMKELSQQAGL--------SDAVVVNTCAVTAEAVRKARQE 52 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER- 142 + R+R +E ++V GC AQ E + R V+ V+G T LP+ + Sbjct: 53 IRRLR-------RENPSARLIVTGCAAQTEPDTFARMDE-VDAVIG-NTEKMLPDTWKSM 103 Query: 143 -ARF-GKR---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 A F GK VD SV + L +DG R R A++ +Q GCD CTFC++PY Sbjct: 104 AADFIGKTEAVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPY 158 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG S VVD+ ++L+D G E+ L G ++ +W G L + ++ L + Sbjct: 159 GRGNSRSVPAGVVVDQIKRLVDKGYNEVVLTGVDLTSW-GADLPAQPKLGDLVMRILKLV 217 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 L RLR ++ ++ + L++A LMP+LHL +Q G D ILK M RRH + + Sbjct: 218 PELPRLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIR 277 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + R +RPD+ +D I GFP E+D F ++ LV F YS R GTP + Sbjct: 278 FTEEARKLRPDMTFGADIIAGFPTESDAHFENSLKLVTDCDLTWLHVFPYSKRAGTPAAR 337 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 + +Q++ NV +R L+ Q + A +G+ +L+E +GR+ Sbjct: 338 IPQQINGNVIRDRAARLRAAGEAQVQNHLAAQIGKTHRILMEN------PHMGRTEQFTE 391 Query: 438 VVLNSKNHNIGDIIKVRIT 456 V ++ G I+ IT Sbjct: 392 VTFDAAQPE-GQIVTASIT 409 >gi|157825701|ref|YP_001493421.1| MiaB-like tRNA modifying enzyme [Rickettsia akari str. Hartford] gi|157799659|gb|ABV74913.1| MiaB-like tRNA modifying enzyme [Rickettsia akari str. Hartford] Length = 416 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 118/400 (29%), Positives = 200/400 (50%), Gaps = 37/400 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N+Y+S + G + V + NTC + KAAEK + R Sbjct: 9 VITFGCRLNIYESEIIRKNLALSGIDNV--------AIFNTCAV-TKAAEK------QAR 53 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143 K +L ++V GC AQ ++ P V+ V+G + YY++ + Sbjct: 54 QAIRKAKKNNPNLKIIVTGCSAQT-SPQMYGNMPEVDKVIGNEEKLLHNYYQITD----- 107 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K V+ SV++ L G +R AF+ +Q GCD FCTFC++PY RG Sbjct: 108 --EKIAVNDIMSVKETVGHLVSSFDGKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSR 160 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262 S + + ++ + L+ NG E+ G +V A+ G L G TF+ ++ L+ + L R Sbjct: 161 SVPIGAIAEQVKYLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPELKR 218 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ D L + + +MP+ H+ +Q+G + ILK M RRHT + + ++ Sbjct: 219 LRLSSIDVAEIDDELFELIAYSERIMPHFHISLQAGDEMILKRMKRRHTRAKVIEFCRKL 278 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R++RP+++ +D I GFP ET + F T L+ + F YS R GTP + M QV Sbjct: 279 RAIRPEVSFGADIIAGFPTETPEMFDNTRKLISEAALQYLHVFPYSEREGTPAARM-PQV 337 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 + ++ ER L+++ + Q F +GQ +E+L+E + Sbjct: 338 PKTIRKERAEILRQEGQNQLSEFFKKHIGQKVELLVENNN 377 >gi|302035686|ref|YP_003796008.1| putative tRNA modifying enzyme, MiaB-like [Candidatus Nitrospira defluvii] gi|300603750|emb|CBK40082.1| putative tRNA modifying enzyme, MiaB-like [Candidatus Nitrospira defluvii] Length = 484 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 132/445 (29%), Positives = 221/445 (49%), Gaps = 39/445 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC N DS M + G++ A+++++NTC E+A ++ + + +++ Sbjct: 24 GCSKNQVDSEVMLGTLVAGGFQLTGDARAAEVVIINTCGFIEEAKQESINSI-----IEH 78 Query: 93 SRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE-----LLERARFG 146 R+K+ G V++A GC+AQ E+L+ P ++ VVG + R+ E L +AR Sbjct: 79 GRLKKSGSCRVLIAAGCLAQRYQGELLKELPELDGVVGTGEFGRIAEICRSLLAPKARQQ 138 Query: 147 KRVVDTD---YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + Y E RL +A+L I EGC++ C FC +P RG + Sbjct: 139 RLWIGQPPYLYDAETPRIRLGTPH---------SAYLKIAEGCNRNCAFCAIPIMRGKQR 189 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 SR + +V EA +L+ GV E+ L+ Q+ + G+D G K + LL L +K + Sbjct: 190 SRPIESIVAEAGRLVQEGVKELNLISQDTINY---GVDLGLKQGLTALLRELVTVKDVRW 246 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R +P+ ++D L+ + + YL +P+Q SD +LK M+R Q+++RI Sbjct: 247 IRPFYLYPQQVTDELLDLYAGEARITKYLDMPLQHISDGMLKRMHRLGDRKHVTQLVERI 306 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P + + FIVGFPGETD F + + + + F YS GT ++ +V Sbjct: 307 RAKIPGVFFRTAFIVGFPGETDAMFEELKQFILDMEFDRVAVFLYSDEEGTSAVDLDRKV 366 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-----GRSPW 434 D V ER LL LQ+ + E + N A +G+ +EVL++ +E +L+ G +P Sbjct: 367 DLAVMEERRNELLALQESISEAK---NRAYLGRTMEVLVDGISEESDRLLECRHEGLAPE 423 Query: 435 LQSVVLNSKN-HNIGDIIKVRITDV 458 + VV +N G+ + V ITDV Sbjct: 424 IDGVVFCDRNAAKPGEFVSVTITDV 448 >gi|308274461|emb|CBX31060.1| hypothetical protein N47_E45720 [uncultured Desulfobacterium sp.] Length = 433 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 127/443 (28%), Positives = 215/443 (48%), Gaps = 24/443 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F + GC++N +S + G+ AD+ ++NTC + KA+ + Sbjct: 3 KFISTTLGCKVNQCESESISKHLVLSGWLSAEDGTGADVCIINTCTVTAKASMQS----- 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R I+ + ++V GC A+ E +E L++ V+ ++G + +++ L Sbjct: 58 --RQAIRKAIRLNPEAKIIVTGCYAETESDE-LKKINGVHHIIGQKEKHKILSLANNCFS 114 Query: 146 GKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + + E+ F RL + NR R AFL IQ+GC+ FCT+C+VPY RG Sbjct: 115 DGNPMPCNDELFDENGFMRLPALHS-ENRTR---AFLKIQDGCEAFCTYCIVPYARGKSR 170 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 S V++ + + G E+ L G ++ + GLD K + LL L + + R Sbjct: 171 SMPFETVIESIKNIKKAGHREVVLSGIHIGKY---GLDLSPKTSLLSLLNLLDSLDIIDR 227 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R ++ P ++ +I D++ P+ H+P+QSG + ILK M R +T+ ++ +I I Sbjct: 228 IRISSIEPNELVPEIISLAAKSDIICPHFHIPLQSGDNEILKKMRRPYTSEFFKDLILNI 287 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + PD AI D + GFPGETD+ F+ T L++ + F +SPR T +NM +V Sbjct: 288 NNHMPDAAIGVDILAGFPGETDEAFQNTYSLINDLPVTYLHVFPFSPRKNTLAANMAGRV 347 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVVLN 441 ++ R L+K ++ F VG I VLIE+ + + L+ G SP V++N Sbjct: 348 PADIVKSRCAILRKLGSLKKAGFYKKAVGTDINVLIEEKREPQNNLLKGLSPNYIPVLIN 407 Query: 442 SKNHNIGDIIKVRITDVKISTLY 464 D +K I +VKI Y Sbjct: 408 GD-----DCMKNSIANVKIQRAY 425 >gi|307294713|ref|ZP_07574555.1| MiaB-like tRNA modifying enzyme [Sphingobium chlorophenolicum L-1] gi|306879187|gb|EFN10405.1| MiaB-like tRNA modifying enzyme [Sphingobium chlorophenolicum L-1] Length = 443 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 118/413 (28%), Positives = 190/413 (46%), Gaps = 40/413 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N+ +S + +M Q DLIV+N+C + +A + + R R Sbjct: 8 TLGCRLNIAESEAIREMAGGQD----------DLIVVNSCAVTAEAVRQTRQAIRRARRD 57 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + ++V GC AQ E E + + V+ + P + + G + + Sbjct: 58 RPD-------ARIMVTGCAAQTEPETFAAMAEVDAVIGNREKMTPSPYSSSQRKLGSQEI 110 Query: 151 DTDYSVE-DKFERLSIVDGGYNR--------------------KRGVTAFLTIQEGCDKF 189 E F ++ +G + AFL +Q GCD Sbjct: 111 GHSVGPEIPAFAGMTNEEGAAQKVQVSDIMAVRETAPHMASAFAEHARAFLEVQNGCDHR 170 Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249 CTFC++PY RG S V+D+A+KL+D G EI L G +V ++ G L G Sbjct: 171 CTFCIIPYGRGNSRSVPAGAVIDKAKKLVDAGYREIVLTGVDVTSY-GPDLPGAPSLGLL 229 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 + L + GL RLR ++ ++ + L +MP+LHL +Q+G D ILK M RR Sbjct: 230 IERILKGVPGLSRLRLSSLDSVEIDERLFDLLAHEPRMMPHLHLSLQAGDDMILKRMKRR 289 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 H+ E +I++R+++ RPDI+I +D I GFP E + F ++ LV++ F YSP Sbjct: 290 HSRAEAIRIVERLKAARPDISIGADIIAGFPTEDEAMFENSLRLVEQCAIVHGHIFPYSP 349 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 R GTP + M QVD R L+ Q+ + + +G VL+E++G Sbjct: 350 RTGTPAARM-PQVDRATIKARAARLRSACEAQREGWLRSLIGSTQSVLVERNG 401 >gi|307824406|ref|ZP_07654631.1| MiaB-like tRNA modifying enzyme YliG [Methylobacter tundripaludum SV96] gi|307734390|gb|EFO05242.1| MiaB-like tRNA modifying enzyme YliG [Methylobacter tundripaludum SV96] Length = 436 Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 141/463 (30%), Positives = 214/463 (46%), Gaps = 46/463 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 PQ F+ S GC + DS R+ S+GY + DADL+V+NTC + A E+ Sbjct: 3 APQIGFI-SLGCPKALVDSERILTKLRSEGYTISPTYQDADLVVVNTCGFIDAAVEESLD 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + + G V+V GC+ E E I R P V V G + L E++ Sbjct: 62 SIGEA-------LAQNGK--VIVTGCLGSREAE-IRERHPQVLKVTG---AHALEEVV-- 106 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 V + D F L G R A+L I EGC+ CTFC++P RG Sbjct: 107 ----AAVHEHLPPPHDPFISLVPPQGIKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDL 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR + V+ EA +L + GV E+ ++ Q+ +A W+G+ + + F DL Sbjct: 162 VSRPVDDVMLEAERLANAGVKELLVVSQDTSAYGLDLKYQSRDWKGRSV---RTRFYDLA 218 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L ++ +R+ Y +P + A G + +PYL +P Q + RILK M R Sbjct: 219 EALGDLGIWIRMHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHANSRILKLMKRPAA 275 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I R + PDI + S FIVGFPGET+ +F +D + + + F YSP Sbjct: 276 GENNLERIKAWREICPDITLRSTFIVGFPGETEQEFEQLLDFMSEAQMDRVGCFAYSPVK 335 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 G +++ +QV E VK ERL E + VG+I VLI++ +E V R Sbjct: 336 GAVANDLPDQVPEEVKQERLARFMAHQAEISAARLQQRVGRIETVLIDEVVEEGA--VAR 393 Query: 432 S----PWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 S P + V ++ H +GD + V + + L+G LV Sbjct: 394 SKADAPEIDGQVFIDGATHLKVGDFVDVELEEADEYDLWGRLV 436 >gi|296125911|ref|YP_003633163.1| MiaB-like tRNA modifying enzyme YliG [Brachyspira murdochii DSM 12563] gi|296017727|gb|ADG70964.1| MiaB-like tRNA modifying enzyme YliG [Brachyspira murdochii DSM 12563] Length = 440 Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 134/459 (29%), Positives = 220/459 (47%), Gaps = 36/459 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSF 83 + ++ S GC+ N D + + G+ N+ +DAD+IV+NTC I + E + + Sbjct: 2 KNIYLHSLGCEKNTVDGEHILAILQKNGFNVTNNPEDADVIVINTCAFIEDSKKESIDAI 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 K + K ++V+GC+++ + L V+ +G ++ E + + Sbjct: 62 FDHSMYKKYGKCKR-----LIVSGCMSERYKDNFLDMFKEVDAAIGIHDLEKILEAVNKD 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 F Y ED E D N + ++ I +GC C+FC +P RG Sbjct: 117 GF--------YDGEDNTEYKEYGDR-INTGSKYSVYIRISDGCHANCSFCAIPGIRGDHR 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 SR + +V EA NG EI L+ Q + G D ++ DLL LS+I+G+ Sbjct: 168 SRKIEDIVKEAENYARNGAKEINLIAQETTYY---GHDIYKRLALPDLLKELSKIEGIEW 224 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDR 321 +R +P +++ +IKA +D ++PY +P+Q + ILK MNR AY+ YR +I+R Sbjct: 225 IRVLYQNPVVLNNDIIKAFFTIDKVVPYFDIPLQHVDEEILKDMNRGKRAYKFYRNMINR 284 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE- 380 IRS + I + IVGFPGET + F+ + V + F YS T + + Sbjct: 285 IRSYDENAVIRTSLIVGFPGETKESFKKLIKFVRSAKIDRVGVFTYSEEENTKALTIDKP 344 Query: 381 QVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 ++ N K ERL+ ++ E+++ + +G+ I+VLIE+ ++ K +GRS + Sbjct: 345 KISRNKKMMLRERLMRAAIEVSEERL---ERFIGKTIDVLIEEK-EDDNKFIGRSKYDAP 400 Query: 438 ------VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468 V N N+ NIGDI+KV IT L G+LV Sbjct: 401 EVDGCVEVYNENNYDINIGDIVKVNITHHTEYDLIGDLV 439 >gi|206890774|ref|YP_002248696.1| hypothetical protein THEYE_A0857 [Thermodesulfovibrio yellowstonii DSM 11347] gi|238055293|sp|B5YKD1|RIMO_THEYD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|206742712|gb|ACI21769.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 425 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 116/437 (26%), Positives = 211/437 (48%), Gaps = 28/437 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F V + GC N DS + D +G+ V AD + +NTC A E+ + Sbjct: 2 KNFTVITLGCPKNTVDSRHLIDALTKEGFYYVEEFKKADFVFINTCCFINDAKEES---I 58 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I +I D ++V GC+++ G+E+ + P ++ V G ++ + +++ Sbjct: 59 DEILTAAKFKI----DRKLIVFGCLSKRYGKELEKEIPEIDAVFGVDEKDKIIDYIKQFS 114 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + ++ Y + ++ I EGC + C+FC++P RG S Sbjct: 115 KNSNFISQNFQ--------------YTVEPPSYRYIKIAEGCSRRCSFCIIPDVRGPFRS 160 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + +++ E + +G+ E L+ Q++ + GK L G T LL L IKG +R Sbjct: 161 LNPEEILKEVENFVHSGIKEFILVAQDITQY-GKDLKG--YTLKRLLKDLCSIKGDFWIR 217 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P D+ + LI+ D + ++ YL +P+Q +RIL+ M RR T EY + I +IR Sbjct: 218 LLYLYPSDIDENLIETIADEEKIVKYLDIPMQHSEERILRLMGRRGTKKEYLKKIKQIRQ 277 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P++ + S FIVGFP ET+++F+ +D ++++ + + FKYS GT ++ Q+ E Sbjct: 278 AIPEVTLRSTFIVGFPTETEEEFQRLVDFIEEVQFDRLGVFKYSKEEGTKAYSLKGQIPE 337 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSVVL-- 440 NVK R + + + N A +G+ E LI+ + +L +P + VV+ Sbjct: 338 NVKNRRYNEIMARQAVISLEKNRALIGKKYEALIDYIDADIAIARLYCHAPEIDGVVILE 397 Query: 441 NSKNHNIGDIIKVRITD 457 N+ + G+ + + IT+ Sbjct: 398 NTADLKAGEKVTILITE 414 >gi|319790598|ref|YP_004152231.1| MiaB-like tRNA modifying enzyme YliG [Thermovibrio ammonificans HB-1] gi|317115100|gb|ADU97590.1| MiaB-like tRNA modifying enzyme YliG [Thermovibrio ammonificans HB-1] Length = 431 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 125/442 (28%), Positives = 217/442 (49%), Gaps = 36/442 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ V S GC N D+ M + + G E V+S++ AD+I++NTC A E+ Sbjct: 3 KKIAVISLGCPKNWVDTELMVGLLKATGEVELVSSLEAADVILVNTCGFITPAKEES--- 59 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + I N ++ K+ D VVVAGC+ Q EE+ R P V+ +G R Sbjct: 60 IDEILNAIEAK-KQSPDKKVVVAGCLYQRYKEELKRELPEVDAFIGVNELLR-------- 110 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTR 199 SVE R + V Y + +T A+L I EGC CT+C +P R Sbjct: 111 -----------SVERILNRKAAVRKPYLYREVLTPPHLAYLKIAEGCSNACTYCAIPIIR 159 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G SR +++VV+EA++L + GV E+ ++ Q+ A+R GE+ LL L +++G Sbjct: 160 GPLKSRPVNEVVEEAKRLAERGVKELYVIAQDTTAYRRDF--GEEKALIKLLEQLEKVEG 217 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + +R ++P ++D LI + L+ Y+ +P+Q +D++L SM R++T +++ Sbjct: 218 IEWIRLMYTYPSHITDNLIDYMASSEKLVKYIDVPLQHINDKVLASMGRKYTRASAEKLL 277 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +++R P IAI + FIVGFP E + +F + + + A FKYS GT + L Sbjct: 278 EKLRLRVPGIAIRTTFIVGFPTEGEAEFEELHTFIKEFKFDWAGFFKYSREEGT-AAYRL 336 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW----- 434 + E +K RL L++ + + VG+ ++++++ + V + Sbjct: 337 GDLPEELKDSRLNLLEETQFWIYEELHRSLVGKRLKLIVDSPSSDMPGFVEARSYRNAYE 396 Query: 435 LQSVVLNSKNHNIGDIIKVRIT 456 + +V NH G I++ ++T Sbjct: 397 IDGIVYLKGNHTPGKIVEAKVT 418 >gi|262341116|ref|YP_003283971.1| MiaB family tRNA modification enzyme: 2-methylthioadenine synthetase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272453|gb|ACY40361.1| MiaB family tRNA modification enzyme: 2-methylthioadenine synthetase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 446 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 121/422 (28%), Positives = 209/422 (49%), Gaps = 28/422 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N ++ + F + Y+ V AD+ V+N+C + + A + R++ Sbjct: 12 GCKLNYAETSTIARKFSNLYYQHVPFKSYADIYVINSCSVTKNAEVE-------FRHIVR 64 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV--VVGPQTYYRLPELLERARFGK--- 147 S + + ++ GC AQ +++ S IV V V+G +++ + L+ K Sbjct: 65 SAMNQNSQAFIIAIGCYAQLNSKKV---SSIVGVDLVLGSYEKFKITDYLDLELLKKSHP 121 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 +++ + F S+ D R R +FL IQ+GCD C++C++P +RG S S+ Sbjct: 122 KIISNAKTKNTYFPSFSVGD----RTR---SFLKIQDGCDYKCSYCIIPISRGASRSESI 174 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRLR 264 ++ R L NGV EI L G N+ + GK + GE TF DL+ ++ +IK R+R Sbjct: 175 ENILKNIRLLFRNGVKEIVLTGVNIGDY-GKKIYGENRRLYTFFDLIQAIDQIKEKGRIR 233 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P + + I+ +P+ H+P+QSGS+ IL M+RR+ Y++ +++IR Sbjct: 234 LSSIEPNLLKNECIEFLSKSKHFVPHFHIPLQSGSNDILGKMHRRYKRELYQEKVNKIRC 293 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD I SD IVGFPGET F T + K+ + F YSPR T + V + Sbjct: 294 FIPDAYIGSDIIVGFPGETHKHFLETYHFLKKLEISSLHIFTYSPRPNTKSITLQGYVSK 353 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQS-VVLNS 442 ++ +R L+ ++ F + V VL EK+ + L G + ++++ + LNS Sbjct: 354 KIQWKRNQILRNLSNKKYRFFCERQVYTKKTVLFEKNSTNQEYLYGYTENYIRTKIPLNS 413 Query: 443 KN 444 N Sbjct: 414 YN 415 >gi|325285391|ref|YP_004261181.1| 30S ribosomal protein S12 methylthiotransferase rimO [Cellulophaga lytica DSM 7489] gi|324320845|gb|ADY28310.1| Ribosomal protein S12 methylthiotransferase rimO [Cellulophaga lytica DSM 7489] Length = 433 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 136/454 (29%), Positives = 227/454 (50%), Gaps = 47/454 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRI 87 V + GC NVYDS + + G E V +D +++V+NTC + A E+ V + L + Sbjct: 13 VVTLGCSKNVYDSEVLMGQLKANGKE-VAHEEDGNIVVINTCGFIDNAKEESVNTILDFV 71 Query: 88 RNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + KE G++ V V GC+++ ++++ P V+ G +LP LL Sbjct: 72 QK------KEAGEVDKVFVTGCLSERYKPDLIKEIPNVDEYFGTS---QLPSLL------ 116 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + ++ DY E ER++ Y A+L I EGCD+ C+FC +P RG S Sbjct: 117 -KALEADYKHELIGERITTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGKHKSTP 168 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRL 263 + +V EA KL GV E+ L+ Q++ + GLD +K ++LL +L +++G+ +RL Sbjct: 169 IEDLVTEAEKLAAKGVKELILIAQDLTYY---GLDLYKKRNLAELLEALVKVEGIEWIRL 225 Query: 264 RYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 Y T P D+ D + K + YL +P+Q SD ILKSM R T + +++ Sbjct: 226 HYAFPTGFPMDVLDLMNKEPK----ICNYLDIPLQHISDSILKSMRRGTTQAKTTKLLQD 281 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R+ P++ I + IVG+PGET++DF V + + + F YS T N+ + Sbjct: 282 FRATVPNMTIRTTLIVGYPGETEEDFETLKQWVTDMRFERLGCFTYSHEENTHAYNLEDN 341 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437 V E VK +R + + + N +G+ + +I++ KE VGR SP + + Sbjct: 342 VPEEVKQDRANQIMEIQSQISWELNQEKIGETFKCIIDR--KEGNYFVGRTEFDSPDVDN 399 Query: 438 -VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 V++++ H + G+ ++IT+ LYGE V Sbjct: 400 EVLIDATKHYLKQGEYASIKITEAADFDLYGEPV 433 >gi|237800198|ref|ZP_04588659.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023055|gb|EGI03112.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 447 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 146/474 (30%), Positives = 236/474 (49%), Gaps = 65/474 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 10 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ + I P V V GPQ Y Sbjct: 69 IGE-------AIKENGK--VIVTGCMG-VDASVIRSVHPSVLSVTGPQQY---------- 108 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 109 ---EQVVNAVHDVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250 RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A +R DG+ K ++L Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPIKTRMTEL 225 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L + VRL Y +P + A G ++PYL +P Q S +ILK M R Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280 Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 A+E + + RI++ R PD+ I S FIVGFPGET++DF+ +D + + + F+Y Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339 Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 SP G P +N+L+ V +++K +R + Q+ + ++ +G+ IEVLI++ Sbjct: 340 SPVEGAP-ANLLDAAIVPDDIKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394 Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++G VGR +P + V + N GD I R+TD L+ E++ Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLEDGSNVQPGDKIMCRVTDADEYDLWAEML 447 >gi|225853371|ref|YP_002733604.1| MiaB-like tRNA modifying enzyme [Brucella melitensis ATCC 23457] gi|256263147|ref|ZP_05465679.1| elongator protein 3 [Brucella melitensis bv. 2 str. 63/9] gi|225641736|gb|ACO01650.1| MiaB-like tRNA modifying enzyme [Brucella melitensis ATCC 23457] gi|263093050|gb|EEZ17200.1| elongator protein 3 [Brucella melitensis bv. 2 str. 63/9] gi|326409934|gb|ADZ66999.1| MiaB-like tRNA modifying enzyme [Brucella melitensis M28] gi|326539647|gb|ADZ87862.1| MiaB-like tRNA modifying enzyme [Brucella melitensis M5-90] Length = 427 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 127/432 (29%), Positives = 209/432 (48%), Gaps = 34/432 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S M + G + ++ D I+ NTC + +A + + + R Sbjct: 7 TFGCRLNTYESEVMRREADAAG---LGTLKDG-AIIFNTCAVTAEAVRQARQAIRKAR-- 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERAR 144 +E D ++V GC AQ E + V++V+G + +Y LP+ + Sbjct: 61 -----RENPDARIIVTGCAAQTEADNFAAMGE-VDLVLGNEEKLKSNSYRMLPDFGVN-Q 113 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 F K V+ V + + VD R R AF+ +Q GCD CTFC++PY RG S Sbjct: 114 FEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNSRS 168 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + VVD+ ++L+ NG E+ L G ++ ++ G L + L+++ L RLR Sbjct: 169 VPMGAVVDQVKRLVGNGYAEVVLTGVDMTSY-GPDLPSNLRLGKLVKTVLAQVPDLQRLR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ + + L++A LMP+LHL +Q+G D ILK M RRH + + R+ Sbjct: 228 LSSIDSIEADEDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +RPDI +D I GFP ET++ F+ ++ +V++ G F YSPR GTP + M QV Sbjct: 288 LRPDIVFGADIIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARM-PQVRR 346 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + ER L+ + +A G +L+EK G V R+ ++ Sbjct: 347 EIVKERAARLRAEGDRAYEKHLNALHGTRQRLLVEKEG------VARTEGFTLAAVDQG- 399 Query: 445 HNIGDIIKVRIT 456 N G+II+ +T Sbjct: 400 -NAGEIIERIVT 410 >gi|195382799|ref|XP_002050116.1| GJ21959 [Drosophila virilis] gi|194144913|gb|EDW61309.1| GJ21959 [Drosophila virilis] Length = 553 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 132/467 (28%), Positives = 227/467 (48%), Gaps = 42/467 (8%) Query: 16 QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 + + + +VP Q+ +VK++GC N DS M + GY ++ D+ADL +LN+C ++ Sbjct: 63 KTIYESVVPGTQKVYVKTWGCAHNNSDSEYMAGQLAAYGYN-LSGKDEADLWLLNSCTVK 121 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQT 132 + + RN S ++ G VVVAGCV Q A + LR V+G Q Sbjct: 122 NPSEDT-------FRNEIESGMRNGKH--VVVAGCVPQGAPKSDYLRGL----SVIGVQQ 168 Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 R+ E++E G V + + V + + + RK + ++I GC CT Sbjct: 169 IDRVVEVVEETLKGHSVRLLQNKKVHGRRVAGAALSLPKVRKNPLIEIISINSGCLNQCT 228 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 +C + RG S ++V+ AR+ D G CEI L ++ A+ G+ + + +LL Sbjct: 229 YCKTKHARGDLASYPPDEIVERARQSFDEGCCEIWLTSEDTGAY-GRDIGS---SLPELL 284 Query: 252 YSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 + L E+ G+ Y H +++ L + +LH+PVQSGSD +L Sbjct: 285 WQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYAFLHVPVQSGSDSVL 339 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 M R + ++ ++D +RS P + I++D I GFP ET+ DF TM L +K + F Sbjct: 340 GEMKREYCRKDFEHVVDFLRSRVPGLTIATDIICGFPTETEQDFEETMTLCEKYRFPSLF 399 Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKH 421 ++ PR GTP + M E++ N+ +R K+L + S+ GQ+ VL+ + Sbjct: 400 INQFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAGREGQLYTVLVTEI 454 Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +K VG + + V+L +++ +G ++VRIT ++ E++ Sbjct: 455 SHDKLHYVGHNKSYEQVLLPMRDNLLGTRVRVRITGTSKFSMMAEIL 501 >gi|328953723|ref|YP_004371057.1| MiaB-like tRNA modifying enzyme [Desulfobacca acetoxidans DSM 11109] gi|328454047|gb|AEB09876.1| MiaB-like tRNA modifying enzyme [Desulfobacca acetoxidans DSM 11109] Length = 440 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 124/449 (27%), Positives = 217/449 (48%), Gaps = 40/449 (8%) Query: 31 SYGCQMNVYDSLRM----EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++GC++N Y+S M E + F+ ++S + AD++V+NTC + + +V L + Sbjct: 15 TFGCKVNQYESAFMAEQAEKLTFT-----LSSPEAADILVVNTCTVTARTDRQVRQCLRQ 69 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RAR 144 L++ ++V GC AQ +E L P V V G R ELL Sbjct: 70 WGRLQSPPT-------ILVTGCYAQRAPQE-LANFPGVKAVFGNVEKGRWLELLAAMSQT 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G V +D ++F + + G+ R AF+ IQ+GC +C++C+VP RG E Sbjct: 122 AGTMVRVSDIQNCNRFVPMPLGSFWGHTR-----AFMKIQDGCGHYCSYCIVPLVRGPER 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S S ++ + + L D G EI G N++ + G+ L G+K DL+ L + +R Sbjct: 177 SLPSSDLLRQLQHLSDAGFQEIVFTGVNLSRY-GRDLPGDKGLI-DLVRLLRQTSWPLRF 234 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+++ P+D+S L++ D P+ H+P+QSG+ +L +M+R + + +I + Sbjct: 235 RFSSLEPQDISYGLLRELSDWPHFCPHFHIPLQSGASAVLAAMHRNYQPAWFEALIRELT 294 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++ P A+ D +VGFP ET F T +L++++ A F YS R GT + + Q Sbjct: 295 ALFPQAAVGLDVMVGFPTETAAAFEQTKELLNRLPVAYLHVFPYSARPGTEAAVLSPQTS 354 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS------ 437 +R L+ +++ F +GQ++EVL+E G + R WL+ Sbjct: 355 AREVGQRARSLRDLSHGKKLEFYQRHLGQVVEVLVE------GPVAHRPGWLKGLTANYL 408 Query: 438 -VVLNSKNHNIGDIIKVRITDVKISTLYG 465 V+L + I++R+ ++ L G Sbjct: 409 RVMLPGPPEWVNRFIRLRLIEMNGQDLIG 437 >gi|282877988|ref|ZP_06286797.1| MiaB-like protein [Prevotella buccalis ATCC 35310] gi|281299989|gb|EFA92349.1| MiaB-like protein [Prevotella buccalis ATCC 35310] Length = 453 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 116/404 (28%), Positives = 197/404 (48%), Gaps = 31/404 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ +M G V+ + AD+ ++NTC + E A K + R+ Sbjct: 16 TLGCKLNFSETSTFGEMLQELGVRTVDRGERADICLINTCSVTEVADHKCRQAIRRM--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF----- 145 ++E ++V GC AQ E E + + P V++V+G L + L A Sbjct: 73 ----VRENPGAFIIVTGCYAQLESEAV-SKIPGVDLVLGSNEKAHLVQYLNDAWLHRNAL 127 Query: 146 ---GKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G V D ++ + K + + ++ FL +Q+GC+ FCT+C +P+ RG Sbjct: 128 REQGDEVTDGLHAFQSVKTKDIKTFQPSCSKGNRTRYFLKVQDGCNYFCTYCTIPFARGF 187 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC--TFSDLLYSLSEIKG 259 + S++ +V +A + + G EI L G N+ + GE+ TF DL+ +L +++G Sbjct: 188 SRNPSIASLVQQAEQAAEEGGKEIVLTGVNIGEF------GERTDETFLDLVKALDQVEG 241 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R R ++ P M+D LI MP+ H+P+QSGSD +LK M+R + + I Sbjct: 242 IRRFRISSLEPDLMADELIDYCAQSRAFMPHFHIPLQSGSDEVLKLMHRHYDTSLFADKI 301 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM- 378 I+ V P I D +VG GE + F + + + + Q F YS R GT ++ Sbjct: 302 HHIKEVMPHAFIGVDVMVGCRGEKPEYFEESYEFIRSLDVTQLHVFPYSERPGTRALSIP 361 Query: 379 --LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + + D+ ++++RLL L E+ +F VGQ EVL EK Sbjct: 362 YVVSEHDKKLRSKRLLQLSD---EKTHAFYAKYVGQEAEVLFEK 402 >gi|149174611|ref|ZP_01853237.1| hypothetical protein PM8797T_10069 [Planctomyces maris DSM 8797] gi|148846721|gb|EDL61058.1| hypothetical protein PM8797T_10069 [Planctomyces maris DSM 8797] Length = 436 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 125/432 (28%), Positives = 200/432 (46%), Gaps = 38/432 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR--IR 88 + GC++N Y++ +++ GY + ADL V+NTC + K GR IR Sbjct: 19 TLGCKVNQYETQLVKEALEKNGYREAGEAETADLCVVNTCTVTATGDSK-----GRKLIR 73 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 NL K ++V GC A + + + + VV + LP++LER Sbjct: 74 NL----AKNNPGTKILVMGCYATRDPKTVSELPGVFEVVTDKR---ELPDILER----HG 122 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 +VD + + FE RKR A++ +Q+GC CT+C++P R SRS Sbjct: 123 IVDMPTGISE-FE---------GRKR---AYVKVQDGCILRCTYCIIPSVRPGLQSRSPE 169 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 + E R+L+DNG EI L G +V + RGK L L +I G R+ Sbjct: 170 DIEAEVRRLVDNGFKEIVLTGIHVGHFGVDTTRGKS-GKPPFRLWHLFRKLDQIPGDWRM 228 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ +++D I A D + L P H +QSGSD +L+ M RR+ + + + ++R Sbjct: 229 RLSSVETAEINDDFISAAADCEHLCPQFHPSLQSGSDTVLRRMKRRYHVSRFLEKLQKMR 288 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + ++D IVGFPGETD +F TM ++ + + F +S R GTP + +QV Sbjct: 289 ERLNHPSFTTDVIVGFPGETDAEFAETMQACEEAAFMKIHIFPFSARKGTPAATYEDQVS 348 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNS 442 ++ ER L R F + + +EV+IE+ + G + G W VV Sbjct: 349 PEIRQERCAQLADLERSLAQKFYHTLIDRDLEVMIERECDGRPGWVRGTDRWYAPVVCQG 408 Query: 443 KNHNIGDIIKVR 454 ++G + R Sbjct: 409 TKADLGKFVYAR 420 >gi|126734340|ref|ZP_01750087.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. CCS2] gi|126717206|gb|EBA14070.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. CCS2] Length = 423 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 112/355 (31%), Positives = 179/355 (50%), Gaps = 31/355 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y++ M+++ + G + + IV+NTC + +A K + ++R Sbjct: 14 NHGCRLNAYETEAMKELATAAGVD--------NAIVVNTCAVTSQAVRKARQDIRKLR-- 63 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLERA 143 ++ D ++V GC AQ E + V+VV+G P T+ + P+L+ + Sbjct: 64 -----RDYPDAKLIVTGCAAQTEPDTFANMGE-VDVVIGNTEKMDPATWAGMAPDLIGQT 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + VD SV + L +DG R R A++ +Q GCD CTFC++PY RG Sbjct: 118 ESVQ--VDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSR 170 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S VVD+ ++L+D G E+ L G ++ +W G L ++ L + L RL Sbjct: 171 SVPAGVVVDQIKRLVDTGYNEVVLTGVDLTSW-GADLPATPKLGDLVMRILKLVPDLPRL 229 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ ++ + L++A LMP+LHL +Q G D ILK M RRH + R Sbjct: 230 RISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIAFCQEAR 289 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++RPD+ +D I GFP ETDD F ++ LV + F YSPR GTP + M Sbjct: 290 TLRPDMTYGADIIAGFPTETDDMFANSLALVKECDLTWLHVFPYSPRPGTPAAKM 344 >gi|167750131|ref|ZP_02422258.1| hypothetical protein EUBSIR_01100 [Eubacterium siraeum DSM 15702] gi|167656874|gb|EDS01004.1| hypothetical protein EUBSIR_01100 [Eubacterium siraeum DSM 15702] Length = 446 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 122/450 (27%), Positives = 213/450 (47%), Gaps = 26/450 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D+ M G++ VN AD++++NTC + A E+ + + Sbjct: 11 SLGCPKNQCDAELMLAKIAKAGFKIVNEAGLADVVIINTCGFIQSAKEEAIEEIMEAISR 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 KN I + ++V GC+A+ +++ P ++ VVG + E++ +RV+ Sbjct: 71 KNDGINKK----IIVTGCLAERYQKQMDEEFPEIDAVVGIAKNDDIVEIINSVMLDRRVI 126 Query: 151 DTDYSVEDKFE--RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + E +L Y A+L I +GC C++C +P RG SR + Sbjct: 127 TFGDKLCHNMEGDKLQSTLPHY-------AYLRIADGCSNKCSYCAIPLIRGKMRSRKME 179 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 +++EA+K +NGV E+ ++ Q+V A+ G+D +K DLL L +I G+ +R Sbjct: 180 NIIEEAKKFAENGVKELVIVAQDVTAY---GIDLYKKYALPDLLKQLCKIDGIKWIRLLY 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P M+D LI+ D ++ Y+ +P+Q + IL++M R R++ ++R P Sbjct: 237 CYPERMTDELIETIKTEDKVLNYIDIPIQHCNKEILRNMYRGGDEQSLRELFAKLRREIP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + + + I GFPGET++ F + V+ I + + F YS TP + M +QVDE + Sbjct: 297 GVVLRTTLITGFPGETEEQFSELAEFVNDIKFERLGCFAYSAEEDTPAAEMPDQVDEGER 356 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSK 443 R + + + + +G EV+ E + GRS P + ++ + Sbjct: 357 QRRADIITGEQEIRMGEYYAGMIGNTYEVVCEGFDRYSDMYFGRSMHFAPEIDGMIYFTS 416 Query: 444 NHN-----IGDIIKVRITDVKISTLYGELV 468 + IGD + V+ITDV + L GE V Sbjct: 417 AKDKGPLTIGDFVNVKITDVLENNLLGERV 446 >gi|195456808|ref|XP_002075296.1| GK17257 [Drosophila willistoni] gi|194171381|gb|EDW86282.1| GK17257 [Drosophila willistoni] Length = 570 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 129/472 (27%), Positives = 227/472 (48%), Gaps = 41/472 (8%) Query: 11 AHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68 A + + + ++P Q+ ++K++GC N DS M S GY+ + D+ADL +LN Sbjct: 59 AKTLRAPIHESVIPGTQKVYIKTWGCAHNNSDSEYMAGQLASYGYQLCSGKDEADLWLLN 118 Query: 69 TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILRRSPIVNVV 127 +C ++ + + RN S ++ G VVVAGCV Q E LR V Sbjct: 119 SCTVKNPSEDT-------FRNEIESGMQNGKH--VVVAGCVPQGGPKSEYLRGL----SV 165 Query: 128 VGPQTYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186 +G Q R+ E++E G V + + V + + + RK + ++I GC Sbjct: 166 IGVQQIDRVVEVVEETLKGHSVRLLQNKKVNGRRVAGASLALPKVRKNPLVEIISINTGC 225 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246 CT+C + RG S ++V+ AR+ G CEI L ++ A+ G+ + + Sbjct: 226 LNQCTYCKTKHARGDLASYPPEEIVERARQSFAEGCCEIWLTSEDTGAY-GRDIGS---S 281 Query: 247 FSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 +LL+ L E+ G+ Y H +++ L + +LH+PVQSG Sbjct: 282 LPELLWQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYSFLHVPVQSG 336 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 SD +L M R + ++ ++D +R+ P + I++D I GFP ET+ DF TM L +K Sbjct: 337 SDSVLGEMKREYCRKDFEHVVDFLRARVPGLTIATDIICGFPTETEADFEETMTLCEKYR 396 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEV 416 + F ++ PR GTP + M E++ N+ +R K+L + ++ VG++ V Sbjct: 397 FPSLFINQFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYTYEPYAGRVGEVYAV 451 Query: 417 LIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 L+ + +K VG + + ++L + + +G + VRIT V ++ G+++ Sbjct: 452 LVTEISHDKLHYVGHNKSYEQILLPMRKNLLGTRVHVRITSVSKFSMMGDIL 503 >gi|19704549|ref|NP_604111.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714835|gb|AAL95410.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 435 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 129/449 (28%), Positives = 228/449 (50%), Gaps = 40/449 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ +++ +GYE V D +D+ ++N+C + A K + L R + + Sbjct: 11 TLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKI 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILR------------RSPIVNVVVGPQTYYRLPE 138 N + K V+V GC AQ EIL +S IVN V + Sbjct: 71 -NPKAK------VIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDIS---- 119 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ER + G + +Y E +F L + A++ IQ+GC+ FC++C +P+ Sbjct: 120 -FEREKNGNIFQEKEYQ-EYEFATL---------REMTRAYVKIQDGCNHFCSYCKIPFA 168 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG SR ++ E KL+++G EI L+G +++A+ G+ + EK F LL + IK Sbjct: 169 RGKSRSRKKENILKEIEKLVEDGFKEIILIGIDLSAY-GEDFE-EKDNFESLLEDILRIK 226 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L R+R + +P ++D I+ + LMP+LH+ +QS D +LK+M R + + ++ Sbjct: 227 DLKRVRIGSVYPDKITDRFIELFKN-KKLMPHLHISLQSCDDTVLKNMRRNYGSSLIKKS 285 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + +++S D+ ++D IVGFP E + F+ T D++ +I ++ F+YS R GT SNM Sbjct: 286 LLKLKSKVKDMEFTADVIVGFPKEDEIMFQNTYDVIKEIEFSGLHIFQYSDREGTIASNM 345 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP-WLQS 437 ++D K +R L +E V + + +EVL+E+ + G+ G S +L+ Sbjct: 346 DGKIDVKTKKQRADRLDSLKQEMIVDSRKKYLEKSLEVLVEEE--KNGEYFGYSQNYLRV 403 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466 + K + ++I V++ V+ L E Sbjct: 404 KFRSDKKDLVNNLINVKVKCVENDILIAE 432 >gi|183220785|ref|YP_001838781.1| putative MiaB-like tRNA modifying enzyme [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910885|ref|YP_001962440.1| 2-methylthioadenine synthetase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|238066359|sp|B0SGD8|RIMO_LEPBA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238066364|sp|B0SPT9|RIMO_LEPBP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|167775561|gb|ABZ93862.1| 2-methylthioadenine synthetase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779207|gb|ABZ97505.1| Putative MiaB-like tRNA modifying enzyme [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 448 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 122/438 (27%), Positives = 216/438 (49%), Gaps = 19/438 (4%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVY 81 P+ FF+ + GC N DS+ M +G + +D ++NTC I++ E + Sbjct: 11 TPKSFFITTLGCPKNTVDSMAMHQSLLKEGLLPAAGPEASDFHLVNTCTFIQDATKETIQ 70 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L I K ++ K +VV GC A+ G+EI P V++ G Y + E+L Sbjct: 71 TILDSIDIKKQNKQK------LVVVGCFAERAGKEISDDLPEVDLHFGTGKYDKAGEIL- 123 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R F D ED ERL+ G N + +++ I +GC++ C FC++P RG Sbjct: 124 RKNFPLEFKDLTEFNEDLLERLTTSKGIENYSKPY-SYVKISDGCNRGCHFCIIPNLRGK 182 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 + V+++ + + G EI L+ Q+ + GK D DL+ S++ ++GL Sbjct: 183 YRDTDSNDVLEQTKLAVKAGSKEICLVSQDT-VFYGKDTD----KLMDLVRSVAAVEGLE 237 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 LR +P ++ L+ + ++ + PYL P+Q S +LKSMNR ++ + + Sbjct: 238 ILRLLYLYPDKKTEKLLDLYREIPKIAPYLESPLQHVSKSVLKSMNRTGDYEFFKSLFQK 297 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R +RPD+ I + FI+GFPGET +D + V+ + + F YSP+ GT G+ M Q Sbjct: 298 ARDIRPDLEIRTSFILGFPGETMEDVEEIIRFVEDVKPEKVNLFPYSPQEGTKGATMDGQ 357 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR---SPWLQSV 438 + + A R+ +++ + + +G+I ++++ + G +V R +P + V Sbjct: 358 LKDKEIARRVNLVREAYLGTLKTIHQNRIGKIYPCVVDEV-LDDGAIVRRLQDAPEIDEV 416 Query: 439 V-LNSKNHNIGDIIKVRI 455 V + +K+ +G KVR+ Sbjct: 417 VYVETKDLKLGQFGKVRV 434 >gi|118496968|ref|YP_898018.1| tRNA-methylthiotransferase MiaB protein [Francisella tularensis subsp. novicida U112] gi|194324197|ref|ZP_03057971.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] gi|238066223|sp|A0Q4U9|RIMO_FRATN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|118422874|gb|ABK89264.1| tRNA-methylthiotransferase MiaB protein [Francisella novicida U112] gi|194321644|gb|EDX19128.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] Length = 439 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 130/457 (28%), Positives = 215/457 (47%), Gaps = 52/457 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC N+ DS R+ ++GY+ V+S D+AD++++NTC A ++ Sbjct: 4 IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G I E G +LV GC+ + + I + P V + GPQ Y L +E Sbjct: 63 VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + D+ + + + Y ++L I EGC+ CTFC++P RG Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 SRS+ ++ EA KL + GV E+ ++ Q+ +A W K + DL Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEY---QSNIIDLA 219 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L ++ RL Y +P + A G + +PYL +P+Q S +LK M R Sbjct: 220 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVPLQHSSPEVLKRMKRPAH 276 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I++ R + PDI I S FIVGFPGET+ DF +D +K + FKYS Sbjct: 277 TQKTLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVE 336 Query: 372 GTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 G + + E VK +RL + LQ ++ ++ VG +V+I+ K++ Sbjct: 337 GAKANQFDNLISEEVKQQRLDEFMGLQAQISTDKLQ---RFVGTEQQVIIDAINKDENYA 393 Query: 429 VGRSPW------LQSVVLNS--KNHNIGDIIKVRITD 457 +GR+ + Q ++ ++ +N +G+ V IT+ Sbjct: 394 IGRTKYDAPEVDGQVIIGDALERNLKVGEFATVEITE 430 >gi|107029038|ref|YP_626133.1| hypothetical protein Bcen_6297 [Burkholderia cenocepacia AU 1054] gi|116689803|ref|YP_835426.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia cenocepacia HI2424] gi|123070902|sp|Q1BGU5|RIMO_BURCA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065303|sp|A0K7Q6|RIMO_BURCH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|105898202|gb|ABF81160.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia cenocepacia AU 1054] gi|116647892|gb|ABK08533.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia cenocepacia HI2424] Length = 453 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 134/477 (28%), Positives = 219/477 (45%), Gaps = 61/477 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE S D ADL+V+NTC ++A ++ Sbjct: 5 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGSYDGADLVVVNTCGFIDEAVQESLDA 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ + A G ++ P V V GP + + Sbjct: 64 IGEA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQA 114 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + K D F L + G A+L I EGC+ CTFC++P R Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K + Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221 Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298 DL+ +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGAFKGH-----VLPYLDVPFQHA 276 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + + + + R + PD+ I S FI GFPGET++ F +D + + Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YSP G +++ + + V+ ER + E + VG+ ++VLI Sbjct: 337 LDRVGCFAYSPVEGATANDLDGALPDEVREERRARFMEVAEEVSANRMQRKVGKTLKVLI 396 Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 397 DEVSAEGGIGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453 >gi|255514141|gb|EET90403.1| RNA modification enzyme, MiaB family [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 423 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 120/441 (27%), Positives = 213/441 (48%), Gaps = 29/441 (6%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 ++K+YGC +N DS + + S + SM DAD+I++NTC ++ +K+ L ++ Sbjct: 4 YIKTYGCTLNQADSDIINSVLDSANIGQAESMQDADVIIVNTCTVKNPTEQKISDLLKKL 63 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 + K V+V GC+A A + I SP ++V +P+ + R G+ Sbjct: 64 ESEKRK---------VLVTGCMAAANPDIISNASPSASIVT-ISNLEDMPDAVSRTASGE 113 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 RVV + D+ + ++G A + + +GC C+FC + R S S Sbjct: 114 RVVMSSLQKRDRL-------ASFKPRQGPVARIPVSDGCMSSCSFCETKFARSALNSFSE 166 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +++ + + +G EI + Q++ A+ G D K + L+ +S I+G ++R Sbjct: 167 DLILNAVKYSVKSGAVEIDITSQDIGAY---GAD-RKSNIALLMEKISRIEGFFKVRIGM 222 Query: 268 SHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P ++ + + L + + HLP+QSGSD +LKSM R +T +Y + +D +RS Sbjct: 223 LNPERLAGYINEFASALGNEKFYKFAHLPLQSGSDSVLKSMRRNYTVDQYLEFVDVLRSY 282 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P I+I +D IVG+P ETD+DF +++++ ++ R T M +Q+D+ Sbjct: 283 VPGISIETDMIVGYPTETDEDFTNSIEVLKSFRPDVTNISRFGARRHTAAHKM-KQLDQT 341 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQ-IIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + ER + +R Q N VGQ I ++ E G + GR+ + VVL + Sbjct: 342 LIKERSSEMYSAVRGIQHGINGKFVGQRITALMTESTGVS---INGRTDSYKQVVLRGAS 398 Query: 445 HN-IGDIIKVRITDVKISTLY 464 + IG +I V + + LY Sbjct: 399 SDLIGKLINVSVHSATANALY 419 >gi|187736112|ref|YP_001878224.1| MiaB-like tRNA modifying enzyme YliG [Akkermansia muciniphila ATCC BAA-835] gi|238065282|sp|B2ULZ9|RIMO_AKKM8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|187426164|gb|ACD05443.1| MiaB-like tRNA modifying enzyme YliG [Akkermansia muciniphila ATCC BAA-835] Length = 452 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 134/456 (29%), Positives = 209/456 (45%), Gaps = 32/456 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 S GC N+ DS M G + AD++V+NTC ++A E + + L +R Sbjct: 9 SLGCPKNLVDSEIMIGHLQKAGMTMTPEPELADVMVVNTCAFIDQAKQEAIDAILDIVRA 68 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 +N E L +VAGC++Q +E+ P V+ +GP +LPE++ + + + Sbjct: 69 RENGAYPENQKL--IVAGCLSQRFRKELPALLPEVDAFIGPDQITKLPEIITQV-MDRTI 125 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGV---TAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D ++ +E K + D R R TA++ I EGC+ C +C++P RG SRS Sbjct: 126 QDRNF-IEGKCR--YVPDWNTPRYRLTPPHTAYIKIAEGCNHGCAYCIIPMIRGRHRSRS 182 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNV-----NAW------RGKGLDGEKC-TFSDLLYSL 254 VV EA LI +GV EI L+ Q++ + W R +D + + + LL +L Sbjct: 183 QQDVVREAETLIRSGVKEICLIAQDITYYGMDKWTDARPNRRSAVDSSRGESLASLLRAL 242 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 + I+G +R +HP SD L A + + Y+ +P+Q SD +L +M R Sbjct: 243 NAIEGEFWIRLLYTHPAHWSDELTAAIAECPKVARYVDIPLQHISDNMLDAMQRVTDGNY 302 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 R ++ IR P IAI + FI GFPGET+DD + M+ +++ + +A F +S GT Sbjct: 303 IRTLLRNIRKAVPGIAIRTTFITGFPGETEDDHQELMEFIEEFRFERAGIFTFSREEGTK 362 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 M QV KA R L +G+ I VL++ G V R+ W Sbjct: 363 AYKMPNQVHHRTKARRYNEATLLLARLASETGQEQIGRQIRVLVDAPG------VARTEW 416 Query: 435 ----LQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 + V +G V +TD L E Sbjct: 417 DAPDIDGTVSVPLTLPVGQFATVTVTDAVAYELTAE 452 >gi|13473651|ref|NP_105219.1| hypothetical protein mlr4319 [Mesorhizobium loti MAFF303099] gi|14024401|dbj|BAB51005.1| mlr4319 [Mesorhizobium loti MAFF303099] Length = 446 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 132/446 (29%), Positives = 211/446 (47%), Gaps = 46/446 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P R V ++GC++N Y+S M S G + ++ NTC + +A + Sbjct: 18 APNRIDVVTFGCRLNTYESEVMRREAESAGLGALQ----GGAVIFNTCAVTGEAVRQARQ 73 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRL 136 + + R ++ ++V GC AQ E E+ V++V+G + +Y L Sbjct: 74 AIRKAR-------RDNPGARIIVTGCAAQTEPEKFAAMDE-VDLVLGNEEKLKANSYRAL 125 Query: 137 PEL----LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 P+ E+AR V+ +SV + + VD R R AF+ +Q GCD CTF Sbjct: 126 PDFGVNDTEKAR-----VNDIFSVRETAGHM--VDAIEGRAR---AFVQVQNGCDHRCTF 175 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 C++PY RG S + VV++ ++L NG EI L G ++ ++ G L G + Sbjct: 176 CIIPYGRGNSRSVPMGAVVEQVKRLAGNGYAEIVLTGVDMTSF-GADLPGAPKLGRLVKT 234 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L ++ + RLR ++ + D L+ A LMP+LHL +QSG D ILK M RRH Sbjct: 235 ILKQVPDVKRLRLSSIDSIEADDDLLDAIATEPRLMPHLHLSLQSGDDMILKRMKRRHLR 294 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + + + +R +RP+I +D I GFP ETD F ++ +V++ G F +SPR G Sbjct: 295 DQSIRFCEDVRKLRPEIVFGADIIAGFPTETDAMFENSIKIVEECGLTHLHVFPFSPREG 354 Query: 373 TPGSNMLEQVDENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 TP + M + E VK A RL + + +S + G +LIE+ G +G Sbjct: 355 TPAARMPQVRREVVKQRAARLRAAGEAAYRRHLS---SLPGTRQSILIERDG------LG 405 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRIT 456 R+ L + G+I++ IT Sbjct: 406 RTEGFTLAALGTGAP--GEIVEATIT 429 >gi|296132944|ref|YP_003640191.1| MiaB-like tRNA modifying enzyme YliG [Thermincola sp. JR] gi|296031522|gb|ADG82290.1| MiaB-like tRNA modifying enzyme YliG [Thermincola potens JR] Length = 439 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 123/448 (27%), Positives = 227/448 (50%), Gaps = 27/448 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M + G++ V AD++++NTC ++A E+ + + L Sbjct: 8 SLGCNKNLVDTEVMMGLLAEAGFKIVEEEKSADILIVNTCGFIDEAKEESINAV-----L 62 Query: 91 KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR- 148 + +R KE G+ ++VAGC+AQ +E+L+ P ++ ++G ++ +++ A G R Sbjct: 63 ELARYKEEGNCKALIVAGCLAQRYKDELLKEMPEIDGIIGTGEIDKIVQVVRDAAAGMRP 122 Query: 149 --VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V D ++ + R + TA++ I EGCD C++C +P RG SR Sbjct: 123 ELVTDREFIYDHTLPR-------WQSTPPYTAYVKIAEGCDNRCSYCAIPGIRGGYRSRP 175 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRY 265 ++ E L+ GV E+ L+ Q+ + G + G + ++L+ ++ + +R+ Y Sbjct: 176 KESILQEVNDLVRRGVKEVILIAQDTTRY-GTDIYG-RYALAELIQEIASLPVHWIRILY 233 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P ++D LI+ + YL +P+Q I+K+MNR+ E ++++R+R Sbjct: 234 --AYPTRITDDLIQIIRGEPKVCKYLDMPIQHVDKDIIKAMNRQGDREEIMKLVNRLRKE 291 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P I + + IVGFPGET+ F+ ++ V + + + F YS TP + QV E Sbjct: 292 IPGITLRTTLIVGFPGETEAQFQNLLEFVREAKFDRLGVFTYSREESTPAGMLANQVPEE 351 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRS----PWLQSVV- 439 VK +R + ++ ++ + N +G I V++E + ++ VGRS P + +V Sbjct: 352 VKIKRRDLIMQEQQKISLQKNRQKIGSTILVMVEGISADNPEIYVGRSDADAPEIDGLVY 411 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467 + N GDI++V+ITD L GE+ Sbjct: 412 FSGPALNPGDIVQVKITDASEYDLIGEV 439 >gi|115525046|ref|YP_781957.1| hypothetical protein RPE_3040 [Rhodopseudomonas palustris BisA53] gi|122295815|sp|Q07M57|RIMO_RHOP5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|115518993|gb|ABJ06977.1| MiaB-like tRNA modifying enzyme YliG [Rhodopseudomonas palustris BisA53] Length = 441 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 130/466 (27%), Positives = 219/466 (46%), Gaps = 48/466 (10%) Query: 18 VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 ++Q P+ FV S GC + DS R+ ++GYE D AD++++NTC + A Sbjct: 1 MEQAPAPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAK 59 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 ++ +G + E G V+V GC+ AE E+I P V + GPQ Y + Sbjct: 60 QESLGAIGEA-------MAENGK--VIVTGCMG-AEPEQIEAAYPNVLSITGPQQYESVL 109 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 E + RA D + G A+L I EGC+ C+FC++P Sbjct: 110 EAVHRALPPIHNPHLDL----------MPPQGIKLTPRHYAYLKISEGCNNRCSFCIIPK 159 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246 RG +SR ++V+ EA +L+ GV E+ ++ Q+ +A W+ + + + Sbjct: 160 LRGDLVSRPAAEVLREAEQLVKAGVKELLVVSQDTSAYGVDLKYAESQWQDRAV---RAR 216 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F DL L + VRL+Y +P + A G ++PYL +P Q + +L M Sbjct: 217 FYDLAKELGSLGAWVRLQYVYPYPHVDEVIELMAKG---AVLPYLDIPFQHAASSVLTRM 273 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + I R R PD+A+ S FIVGFPGET+ +F +D +++ + +FK Sbjct: 274 KRPAAQDKTLARIKRWRETCPDLALRSTFIVGFPGETEQEFAELLDWLEEAEIDRLGAFK 333 Query: 367 YSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 Y P G + + +Q+ VK +R L+ Q+K+ +++ VG +V+I++ G Sbjct: 334 YEPVQGAASNALPDQIPAEVKQQRWDALMARQQKISARRLKRK---VGTRQQVIIDEAGP 390 Query: 424 E--KGKLVGRSPWLQS-VVLNSKNH-NIGDIIKVRITDVKISTLYG 465 KG+ +P + V L+S+ +G+++ +I L+G Sbjct: 391 NGAKGRSKADAPQIDGHVYLSSRRPLRVGELVTAKIDRADAYDLHG 436 >gi|15618388|ref|NP_224673.1| hypothetical protein CPn0477 [Chlamydophila pneumoniae CWL029] gi|4376761|gb|AAD18617.1| Hypothetical Protein CPn_0477 [Chlamydophila pneumoniae CWL029] Length = 421 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 122/443 (27%), Positives = 218/443 (49%), Gaps = 44/443 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFLGR--IRN 89 GC++N Y+ D GY+ V +S ADL ++NTC + A GR +R Sbjct: 16 GCRVNQYEVQAYRDQLTILGYQEVLDSEIPADLCIINTCAVTASAESS-----GRHAVRQ 70 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 L ++ +VV GC+ +++ E +V + R+ Sbjct: 71 L----CRQNPTAHIVVTGCLGESDKEFFASLDRQCTLVSNKEK--------------SRL 112 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 ++ +S + F I ++ + AF+ +Q+GC+ FC++C++PY RG +SR + Sbjct: 113 IEKIFSYDTTFPEFKI----HSFEGKSRAFIKVQDGCNSFCSYCIIPYLRGRSVSRPAEK 168 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 ++ E ++D G E+ + G NV G DGE+ + + L+ + I G+ R+R ++ Sbjct: 169 ILAEIAGVVDQGYREVVIAGINV----GDYCDGER-SLASLIEQVDRIPGIERIRISSID 223 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P D+++ L +A P HL +QSGS+ ILK MNR+++ ++ +++ R+ P Sbjct: 224 PDDITEDLHRAITSSRHTCPSSHLVLQSGSNSILKRMNRKYSRGDFLDCVEKFRASDPRY 283 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 A ++D IVGFPGE+D DF T+ +++ +G+ + SF +S R T Q+ V E Sbjct: 284 AFTTDVIVGFPGESDQDFEDTLRIIEDVGFIKVHSFPFSARRRTKAYTFDNQIPNQVIYE 343 Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH- 445 R L + K++ ++++ +G+ EVL+EK + G SP+ + V Sbjct: 344 RKKYLAEVAKRVGQKEMMKR---LGETTEVLVEKVTGQVA--TGHSPYFEKVSFPVVGTV 398 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 I ++ VR+ V+ L GE+V Sbjct: 399 AINTLVSVRLDRVEEEGLIGEIV 421 >gi|182679251|ref|YP_001833397.1| MiaB-like tRNA modifying enzyme YliG [Beijerinckia indica subsp. indica ATCC 9039] gi|238065293|sp|B2IHC3|RIMO_BEII9 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|182635134|gb|ACB95908.1| MiaB-like tRNA modifying enzyme YliG [Beijerinckia indica subsp. indica ATCC 9039] Length = 449 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 131/461 (28%), Positives = 223/461 (48%), Gaps = 43/461 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GYE S AD +++NTC + A + + Sbjct: 16 PKISFV-SLGCPKALVDSERIITRLRAEGYELTKSHRGADAVIVNTCGFLDSAKAESLAA 74 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G +N +I +V GC+ AE E + P + + GPQ Y + E + A Sbjct: 75 IGEA-AAENGKI--------IVTGCMG-AEPESLQTAYPDLFAITGPQAYESVMEAVHAA 124 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D + F L G R A+L I EGC+ C+FC++P+ RG + Sbjct: 125 -----IAPPD----NPFTELVPPQGIKLTPRHY-AYLKISEGCNNRCSFCIIPHLRGDLV 174 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKC---TFSDLLYSLS 255 SR + +++ EA KL+ GV EI ++ Q+ +A+ + L G++ F DL L Sbjct: 175 SRPIGEILQEAEKLVSAGVKEILVVSQDTSAYGVDLKYAETLYGDRTLRSKFIDLARELG 234 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + VRL Y +P + + A G + +PYL +P Q S +L++M R + Sbjct: 235 SLGVWVRLHYIYPYPHVDAVLDLMAEGKI---LPYLDIPFQHASRNVLRAMRRPGDQEKT 291 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I+ R + PD+ + S FIVGFPGET+DDF+ +D + + + +FKY P P Sbjct: 292 LSRIEEWRKLCPDLTLRSTFIVGFPGETEDDFQILLDWLSEAKLDRVGAFKYEPVADAPA 351 Query: 376 SNM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLV 429 +++ L V V+ +R + Q+K+ +++ +G+ + V+I++ + G+ Sbjct: 352 NDLDLTPVAPEVQTRRYQRFMEHQQKISARRLREK---IGKHVSVIIDEASPKAAIGRTK 408 Query: 430 GRSPWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGELV 468 G +P + V + +GDI+KV+I L+G+ V Sbjct: 409 GDAPSIDGKVHITTHRPLRVGDIVKVKIEAADAYDLHGKAV 449 >gi|94495525|ref|ZP_01302105.1| hypothetical protein SKA58_05735 [Sphingomonas sp. SKA58] gi|94424913|gb|EAT09934.1| hypothetical protein SKA58_05735 [Sphingomonas sp. SKA58] Length = 441 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 127/416 (30%), Positives = 195/416 (46%), Gaps = 47/416 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N+ +S + M Q DLIV+N+C + +A + + R R Sbjct: 8 TMGCRLNIAESEAIRQMAAEQD----------DLIVVNSCAVTAEAVRQTRQAIRRAR-- 55 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144 +E D ++V GC AQ E + + V+ V+G TY LP + + Sbjct: 56 -----RERPDARILVTGCAAQTEPQTFAAMAE-VDAVIGNREKMEAATY--LPPFVS-SE 106 Query: 145 FGKRVVDTD-----YSVEDKFER---------LSIVDGGYNRKRGVT----AFLTIQEGC 186 KR+ D FE+ +S+ D + AFL +Q GC Sbjct: 107 VEKRLAHPDRFSTSLETNGPFEQSAKVRVADIMSVRDTAPHMASAFADHARAFLEVQNGC 166 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246 D CTFC++PY RG S VVD+AR+L+D G EI L G +V ++ G L G Sbjct: 167 DHRCTFCIIPYGRGNSRSVPAGAVVDKARELVDAGYREIVLTGVDVTSY-GPDLPGAPTL 225 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 + L + L RLR ++ +M D L +MP++HL +Q+G D ILK M Sbjct: 226 GLLVERILKGVPDLPRLRLSSIDSVEMDDRLFDLIAHEPRMMPHVHLSLQAGDDMILKRM 285 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 RRH+ + +I++R+++ RPDI+I +D I GFP E D F ++ L+D F Sbjct: 286 KRRHSRADAVRIVERLKAARPDISIGADIIAGFPTEDDAMFTRSLALIDDCAIVHGHIFP 345 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 YSPR GTP + M QVD R L+ ++ ++ + +G VL+E+ G Sbjct: 346 YSPREGTPAARM-PQVDRPTIKARAARLRAACANRRDAWLRSLIGTQQSVLVERSG 400 >gi|84503500|ref|ZP_01001555.1| MiaB-like Radical SAM protein [Oceanicola batsensis HTCC2597] gi|84388178|gb|EAQ01131.1| MiaB-like Radical SAM protein [Oceanicola batsensis HTCC2597] Length = 417 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 130/433 (30%), Positives = 206/433 (47%), Gaps = 40/433 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ + G E + +V+NTC + +A K + R+R Sbjct: 9 TLGCRLNAYETEAMKELAAAAGVE--------NAVVVNTCAVTAEAVRKARQDIRRLR-- 58 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL-PELLERAR 144 +E ++V GC AQ E E + +VV + +T+ P+L+ Sbjct: 59 -----RENPQARIIVTGCAAQTEPETFAAMDEVDHVVGNSEKMQAETWKGFAPDLIGETE 113 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + +VD SV + L +DG + R R A++ +Q GCD CTFC++PY RG S Sbjct: 114 --RVIVDDIMSVTETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPYGRGNSRS 165 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRL 263 VVD+ ++L+D G E+ L G ++ +W G L DL+ L + L RL Sbjct: 166 VPTGVVVDQIKRLVDRGFNEVVLTGVDLTSW-GADLPATP-RLGDLVRRILRLVPDLPRL 223 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ + L++A LMP+LHL +Q+G D ILK M RRH + + + R Sbjct: 224 RISSIDSIEADPALMEAIATEPRLMPHLHLSLQAGDDMILKRMKRRHLRDDAIRFCEEAR 283 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +RP++ +D I GFP ETD+ F ++ L+++ G F YSPR GTP + M QV Sbjct: 284 RLRPEMTYGADIIAGFPTETDEMFENSLRLIEECGLTWLHVFPYSPRPGTPAARM-PQVR 342 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 ER L+ Q + VG VL E G +GR+ V + + Sbjct: 343 GPAIKERAARLRAAGERQVAAHLAGQVGTERTVLTE------GPRMGRTEQFAEVRFD-R 395 Query: 444 NHNIGDIIKVRIT 456 + G +I RI Sbjct: 396 DMPEGRLITARIA 408 >gi|254292479|ref|YP_003058502.1| MiaB-like tRNA modifying enzyme [Hirschia baltica ATCC 49814] gi|254041010|gb|ACT57805.1| MiaB-like tRNA modifying enzyme [Hirschia baltica ATCC 49814] Length = 435 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 131/442 (29%), Positives = 202/442 (45%), Gaps = 33/442 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y+S M + G D I++NTC + +A + + R R Sbjct: 23 TLGCRLNSYESEVMRNHASDAGLN--------DAIIVNTCAVTNEAVRQARQTIRRAR-- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP----QTYYRLPELLERARFG 146 K+ D ++V GC AQ + ++ P V V+G Q P L Sbjct: 73 -----KDRPDTPIIVTGCAAQVD-PDMFANMPEVTRVIGNNEKMQAETFQPANLLNETAP 126 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K VV+ SV + L VDG R R AF+ +Q GCD CTFC++PY RG S Sbjct: 127 KAVVNDIMSVTETAGHL--VDGLEGRAR---AFVQVQTGCDHRCTFCIIPYGRGNSRSVP 181 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +VVD+ R+L+ G E+ L G ++ +W G L + + L L +LR + Sbjct: 182 AGEVVDQVRQLVAKGHYEVVLTGVDLTSW-GADLPNAPNLGNLVARILKLAPDLKQLRLS 240 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + ++ D L + P+LHL QSG + ILK M RRH+ + + R+R+ R Sbjct: 241 SIDAIEIDDQLFDLIAHDKRIAPHLHLSFQSGDNMILKRMKRRHSREDAINLCQRLRAAR 300 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P+I+ +D I GFP ETD+ F TM VD+ G F YS R GTP + + Q++ + Sbjct: 301 PEISFGADLIAGFPTETDEMFANTMACVDECGLDYLHVFPYSARPGTPAAR-IPQLNGEI 359 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 +R L+ K +E+ + D VG + L+E G+ R P + + Sbjct: 360 IKDRAAQLRDKGQERLLLRLDRHVGTTQDALVEMGGR------ARLPDFAPIRIEGDAPK 413 Query: 447 IGDIIKVRITDVKISTLYGELV 468 G ++ + I L G L+ Sbjct: 414 PGSVVTLDIHSRDDKDLIGRLL 435 >gi|163757349|ref|ZP_02164438.1| hypothetical protein HPDFL43_18102 [Hoeflea phototrophica DFL-43] gi|162284851|gb|EDQ35133.1| hypothetical protein HPDFL43_18102 [Hoeflea phototrophica DFL-43] Length = 455 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 131/449 (29%), Positives = 207/449 (46%), Gaps = 42/449 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N ++S M + G + +++NTC + A + + R+R Sbjct: 3 VVTFGCRLNTFESETMRKAAETAGLN--------NAVLVNTCAVTADAVRQARQTIRRLR 54 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLER 142 ++ +VV+GC AQ E E V+ V+G TY +LP+ Sbjct: 55 -------RDNPHARIVVSGCAAQTEPETFAGMDE-VDAVIGNDAKGEAATYRKLPDFGVS 106 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 RV D +V + ++ G+ R AF+ +Q GCD CTFCV+PY RG Sbjct: 107 QSEKIRVNDI-MAVRETAPQMIEAVAGHAR-----AFVQVQNGCDHRCTFCVIPYGRGNS 160 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + VVD+ R L++NG E+ + G + ++ G L G + L++I L R Sbjct: 161 RSVPMGAVVDQIRTLVENGYQEVVITGVDATSY-GADLPGRPSLGTLARTILNQIPELQR 219 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ D L+ D MPYLHL +Q G D ILK M RRH+ + + Sbjct: 220 LRLSSIDSIEVDDALMDLIADEPRFMPYLHLSLQHGDDMILKRMKRRHSRDDAVSFCRTV 279 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RP A +D I GFP ET++ F ++++++ G + F YSPR GTP + M Q+ Sbjct: 280 RDLRPGFAFGADLIAGFPTETEEMFARSLEIIEACGISFLHVFPYSPREGTPAARM-PQL 338 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 D + +A RL +K + A G I L+E G + R+ VV Sbjct: 339 DRGLIKTRAARLRDSGEKAYRAHLG-EMARTGGIHSALVEFSG------IARTENFTPVV 391 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + G + +R+T L GEL Sbjct: 392 --APGAPKGQMALIRVTGQDGERLTGELA 418 >gi|115351773|ref|YP_773612.1| ribosomal protein S12 methylthiotransferase [Burkholderia ambifaria AMMD] gi|122323114|sp|Q0BEZ5|RIMO_BURCM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|115281761|gb|ABI87278.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia ambifaria AMMD] Length = 453 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 134/477 (28%), Positives = 218/477 (45%), Gaps = 61/477 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 5 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ + A G ++ P V V GP + + Sbjct: 64 IGEA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQA 114 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + K D F L + G A+L I EGC+ CTFC++P R Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K + Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221 Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298 DL+ +L E+ VRL Y +P M+D K H ++PYL +P Q Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMADGPFKGH-----VLPYLDVPFQHA 276 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + + + + R + PD+ I S FI GFPGET++ F +D + + Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YSP G + + + ++V+ ER + E VG+ ++VLI Sbjct: 337 LDRVGCFAYSPVEGASANELDGALPDDVREERRARFMEVAEEVSAQRIQRKVGKTLKVLI 396 Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 397 DEVSAEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453 >gi|311748439|ref|ZP_07722224.1| 2-methylthioadenine synthetase [Algoriphagus sp. PR1] gi|311302786|gb|EAZ81201.2| 2-methylthioadenine synthetase [Algoriphagus sp. PR1] Length = 437 Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 123/448 (27%), Positives = 219/448 (48%), Gaps = 38/448 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNS--MDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS + G + DD ++I++NTC + A ++ + Sbjct: 15 TMGCSKNLVDSEVLLTQLKGNGINASHESGTDDNNIIIINTCGFIDNAKQESVDTI---- 70 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ KE G + V V GC++Q +++ + P V+ G + LP +L++ + Sbjct: 71 -LQYVDAKEQGLVDKVYVTGCLSQRYKDDLEKEIPQVDAFFGTRD---LPAILKKFK--- 123 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 DY E ERL Y A++ I EGCD+ C+FC +P RG +SR + Sbjct: 124 ----ADYKHELVGERLLTHSSHY-------AYMKISEGCDRPCSFCAIPLMRGGHVSRPI 172 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 ++V EA NG E+ L+ Q+ + GLD +K ++L+ LS++ G+ +R Sbjct: 173 EELVKEAEHKAANGTKELLLIAQDSTYY---GLDIYKKRNLAELMRRLSDVNGIDWIRLH 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P +I+ + + + YL +P+Q GS +LK+M R T + +I IR + Sbjct: 230 YAYPTGFPMEVIEVMKERENICNYLDIPLQHGSTDVLKAMRRGTTRQKQEDLIHSIRDIL 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDIAI + I G PGE + +++ +D ++++ + + F YS T +M + + + V Sbjct: 290 PDIAIRTTLIAGHPGEGEKEYQEMVDFIERMKFERLGVFTYSHEENTHAFSMEDSIPQEV 349 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW-----LQSVVLN 441 K ER L + + N +G+ +VLI+K KE G +GR+ + V+++ Sbjct: 350 KQERANNLMEIQEQISYDLNQEKIGKTFKVLIDK--KEGGHFIGRTEYDSVEVDNEVLID 407 Query: 442 SKNH--NIGDIIKVRITDVKISTLYGEL 467 + H +GD + V++T+ LY E+ Sbjct: 408 ASKHYCRVGDFVNVKVTEATEFDLYAEV 435 >gi|294664557|ref|ZP_06729900.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605665|gb|EFF48973.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 363 Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 122/377 (32%), Positives = 183/377 (48%), Gaps = 34/377 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GY+ V S D AD++V+NTC + A + Sbjct: 6 PKVGFV-SLGCPKALVDSERILTQLRVEGYDIVPSYDVADVVVVNTCGFIDSAVTESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N V+V GC+ + E+I P V V GPQ Y + E + A Sbjct: 65 IGEAMNANGK---------VIVTGCLGK-RPEQIREAYPQVLAVSGPQDYQSVMEAVHAA 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D F L + D G A+L I EGC+ C+FC++P RG + Sbjct: 115 LPPR---------HDPFVDL-VPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS---------L 254 SR + +V+ EA +L+ GV E+ ++ Q+ +A+ G L + + D LY L Sbjct: 165 SRPVDEVLREAERLVRGGVKELLVVSQDTSAY-GVDLKYAERPWRDRLYQTRMKALCEGL 223 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 SE+ RL Y +P + A G L +PYL +P Q S RILK M R + Sbjct: 224 SELGVWTRLHYVYPYPHVDDVIPLMAEGRL---LPYLDIPFQHASPRILKLMKRPGAVEK 280 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + + R +++ P+I + S FIVGFPGETD +F + +D +D+ + +F YSP G Sbjct: 281 TLERMQRWKAMCPEITVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGAS 340 Query: 375 GSNMLEQVDENVKAERL 391 + + + V E VK ERL Sbjct: 341 ANALPDPVPEEVKQERL 357 >gi|84514983|ref|ZP_01002346.1| MiaB-like tRNA modifying enzyme [Loktanella vestfoldensis SKA53] gi|84511142|gb|EAQ07596.1| MiaB-like tRNA modifying enzyme [Loktanella vestfoldensis SKA53] Length = 422 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 118/398 (29%), Positives = 196/398 (49%), Gaps = 32/398 (8%) Query: 30 KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 ++GC++N Y++ M+++ G + D +++NTC + +A K + ++R Sbjct: 12 SNHGCRLNAYETEAMKELAAQAGVQ--------DAVIVNTCAVTAEAVRKARQDIRKLR- 62 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLER 142 ++ ++V GC AQ E + + + V++V+G P T+ RL P+L+ + Sbjct: 63 ------RDHPGARIIVTGCAAQTEPDTFAKMAE-VDLVIGNTEKMDPATWARLTPDLIGQ 115 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + VD SV + L +DG R R A++ +Q GCD CTFC++P+ RG Sbjct: 116 TEPVQ--VDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPFGRGNS 168 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S VVD+ ++L+D G E+ L G ++ +W G L ++ L + L R Sbjct: 169 RSVPAGVVVDQIKRLVDRGYAEVVLTGVDLTSW-GADLPSAPKLGDLVMRILKLVPDLPR 227 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ D L+ A LMP+LHL +Q G D ILK M RRH + + + Sbjct: 228 LRISSIDSIEVDDNLLAAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCETA 287 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RPD+ +D I GFP ET+D F +++ LV + F YS R GTP + M V Sbjct: 288 RRLRPDMTFGADIIAGFPTETEDMFASSLALVRECDLTWLHVFPYSARPGTPAARM-PAV 346 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + +R L+ Q S A +G+ +L+E Sbjct: 347 NGAAIKDRAARLRAAGDAQVSSHLAAQIGRTHHILMES 384 >gi|114567094|ref|YP_754248.1| MiaB-like tRNA modifying enzyme [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338029|gb|ABI68877.1| MiaB-like tRNA modifying enzyme [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 456 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 117/396 (29%), Positives = 203/396 (51%), Gaps = 21/396 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ ++++ F +GY+ V+ + ADL ++NTC + + K + + Sbjct: 8 TLGCKVNQVETEQLKEKFIQRGYQLVDFNESADLYIVNTCTVTHSSDRKSRA-------M 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-----RARF 145 + +VV GC+AQ + + L P +N++VG Q + EL+E R+ Sbjct: 61 LRRAARRNPGAMVVATGCLAQVDAAQ-LAAIPGLNLIVGSQQKEAILELIEGQVSSRSES 119 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +V K + I + R R AF+ IQ+GC +C++C+VP+ RG S+ Sbjct: 120 EPLIVCPPLVAGKKLPPV-IYSKRHERSR---AFVKIQDGCQSYCSYCIVPFARGPSRSK 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLR 264 V E ++L+D G EI L G + + G D E S LL L + ++G R+R Sbjct: 176 LPEDVAAELQQLVDLGYHEIVLTGIHTGLY---GNDLEDWNLSRLLRLLFARVEGNYRIR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P ++ + L++ + L + H+P+QSGS RIL++MNRR+ Y +++ I Sbjct: 233 LSSLEPVEIDEELLEMAAGGERLCRHFHIPLQSGSSRILRAMNRRYDREFYYKLVQHIVQ 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 A+++D +VGFPGE D++ T+ L+ + FKYS R GT + M QV + Sbjct: 293 RVKGAAVTADVMVGFPGEEKKDYQDTLALLQDLPVLDLHVFKYSKRPGTAAAKMEPQVSD 352 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 K R L + ++ SF + +GQ +EVL+E+ Sbjct: 353 REKEMRSAELIQLAEAKKRSFINQQLGQELEVLVEQ 388 >gi|284040196|ref|YP_003390126.1| MiaB-like tRNA modifying enzyme YliG [Spirosoma linguale DSM 74] gi|283819489|gb|ADB41327.1| MiaB-like tRNA modifying enzyme YliG [Spirosoma linguale DSM 74] Length = 437 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 133/454 (29%), Positives = 222/454 (48%), Gaps = 49/454 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQ------GYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + GC N+ DS ++ F+Q + DDA+++V+NTC + A E+ + + Sbjct: 15 TLGCSKNLVDS----EVLFTQLKGNGMNVTHESKKDDANIVVINTCGFIDNAKEESINTI 70 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + K + I + V V GC++ +E+ P V+ G LP +L+ R Sbjct: 71 LRYVDAKEAGIVDK----VYVTGCLSHRYKDELEVEMPTVDAWFGTN---ELPRMLKTLR 123 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 DY E ERL + A+L I EGCD+ C+FC +P RG +S Sbjct: 124 -------ADYKHELVGERLLTTPAHF-------AYLKIAEGCDRPCSFCAIPLMRGGHVS 169 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263 R + +++ EAR L G E+ L+ Q++ + GLD +K +DL+ L++++G+ + Sbjct: 170 RPIDELLTEARSLARRGTKELILIAQDLTYY---GLDLYKKRNLADLIDQLADVEGIDWI 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++P ++ + + YL +P+Q+GS +LK M R T + +I+ IR Sbjct: 227 RLQYAYPSGFPMDILDVMRNRPNVCNYLDMPLQTGSTELLKLMRRGITREKTESLIETIR 286 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PDI + + IVG PGET+ F+ T D V+++ + + F YS T M + + Sbjct: 287 EKVPDITLRTTLIVGHPGETEAMFQETYDFVERMRFDRLGVFTYSHEDDTHSFTMPDDIP 346 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436 ++K ER L+ LQ+ + ++ N VG+ +VL ++ KE G +GR SP + Sbjct: 347 ADIKQERADELMDLQQGISQE---LNQQKVGKTYKVLFDR--KEGGYFIGRTEADSPEVD 401 Query: 437 SVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468 + VL +GD VRI + LYGE+V Sbjct: 402 NEVLVPATQYVRLGDFANVRIDRAEEFDLYGEVV 435 >gi|218884393|ref|YP_002428775.1| RNA modification enzyme, MiaB family [Desulfurococcus kamchatkensis 1221n] gi|218766009|gb|ACL11408.1| RNA modification enzyme, MiaB family [Desulfurococcus kamchatkensis 1221n] Length = 432 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 123/408 (30%), Positives = 208/408 (50%), Gaps = 38/408 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++++YGC +N D M + +G+E VNS++DAD +++NTC +R + Y + Sbjct: 2 RVYIETYGCALNKSDEALMVENILREGHELVNSIEDADTLIINTCIVR---LDTEYHMVK 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIR L + G L +VAGC+A+AE +L+ +P ++V PQ + E+L+ Sbjct: 59 RIRELYEVASRTGKKL--IVAGCMAKAEPYTVLKIAPEASLV-SPQNSALITEVLKTR-- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR-GV-----TAFLTIQEGCDKFCTFCVVPYTR 199 GK + ++DG R R G+ A + IQEGC C+FC+ + R Sbjct: 114 GKVI---------------LIDGLRERDRIGIHVEDRIAPIPIQEGCLSNCSFCITKHAR 158 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSE-I 257 I +S + VV + + NG EI L G ++ + GLD K +L+ +S + Sbjct: 159 RILVSHGIDAVVKAVERAVRNGAVEIQLTGMDLGTY---GLDLYKTRKLPELVKEVSRRV 215 Query: 258 KGLVRLRY---TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G +R H R + D LI A + + +LH+P+QSGS+++L M R ++ E Sbjct: 216 SGEYMIRIGMINPEHLRYILDDLIDAINESSKVYRFLHIPLQSGSNKVLSVMRRNYSVEE 275 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 Y +I++ +S P ++I++D IVG P E ++DF T+ ++ ++ + + YS R T Sbjct: 276 YIEIVNEAKSRIPGVSIATDIIVGHPMEDEEDFNETLKVIRELEFERVHLAGYSIRPLTY 335 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 ++ L QV VK ER+L + + E + VG+ +E +H Sbjct: 336 SAS-LPQVPTRVKKERVLRALQVIEEVGLKIRLKYVGKEVECFTTEHS 382 >gi|153954068|ref|YP_001394833.1| hypothetical protein CKL_1443 [Clostridium kluyveri DSM 555] gi|238065368|sp|A5N854|RIMO_CLOK5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|146346949|gb|EDK33485.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] Length = 446 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 133/439 (30%), Positives = 219/439 (49%), Gaps = 30/439 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + S YE V AD I++NTC E A ++ + + Sbjct: 10 SLGCDKNRVDSEIILGNVKS-AYEIVTDPKLADFIIINTCGFIESAKQESIDTILEMSQY 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K G +VV GC+AQ G E++ P +++++G Y +L E + Sbjct: 69 KGKYNCRG----IVVTGCLAQRYGIELMELLPEIDIMLGVNDYDKLVE-----NINNFIS 119 Query: 151 DTDYSVED-KFERLSIVDGG-YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 D + + + L+I +G + TA+L I EGCD +CT+C++P RG SRS+ Sbjct: 120 DKQNKIHNCGYSDLNINEGKRILTTKSHTAYLRIAEGCDNYCTYCIIPKIRGKYRSRSIE 179 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++ E +L GV E+ L+ Q+ + G+D K +L+ S+S+I+G+ +R Sbjct: 180 NILQECNELSLRGVKEVILIAQDTTRY---GIDLYNKKMLPELMRSISKIEGIEWIRLLY 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P ++++ +I D + Y+ +P+Q SD ILK M RR + + I+ +R Sbjct: 237 CYPEEITEDIIDEIALNDKVCNYIDIPLQHISDNILKLMGRRGRKKDILRNINELRKKIN 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 DI+I + IVGFPGE+++DF+ + ++ I + FKYS GT M +QV E +K Sbjct: 297 DISIRTTIIVGFPGESEEDFKELKNFIENIKFDNLGVFKYSREEGTRAYKMKDQVSEELK 356 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440 R L+ LQK + S +G +VL+E GK++G GR +P + V+ Sbjct: 357 TAREGELMMLQKHI---IYSMQKYKIGNKYKVLVE--GKKEGVWYGRNYAMAPDIDGVIY 411 Query: 441 --NSKNHNIGDIIKVRITD 457 + K +G +I V+IT+ Sbjct: 412 IKSKKELKVGTMIDVKITN 430 >gi|254245338|ref|ZP_04938659.1| hypothetical protein BCPG_00035 [Burkholderia cenocepacia PC184] gi|124870114|gb|EAY61830.1| hypothetical protein BCPG_00035 [Burkholderia cenocepacia PC184] Length = 461 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 132/475 (27%), Positives = 217/475 (45%), Gaps = 60/475 (12%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + S GC + DS ++ ++GYE S D ADL+V+NTC ++A ++ +G Sbjct: 14 RIGMVSLGCPKALVDSEQIITQLRAEGYEISGSYDGADLVVVNTCGFIDEAVQESLDAIG 73 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPELLE 141 + E G V+V GC+ + A G ++ P V V GP + + + Sbjct: 74 EA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQAV- 123 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + K D F L + G A+L I EGC+ CTFC++P RG Sbjct: 124 HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K +DL Sbjct: 175 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMTDL 231 Query: 251 LYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSGSD 300 + +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 232 VAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGAFKGH-----VLPYLDVPFQHAHP 286 Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 +LK M R A + + + + R + PD+ I S FI GFPGET++ F +D + + Sbjct: 287 EVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAELD 346 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + F YSP G +++ + + V+ ER + E + VG+ ++VLI++ Sbjct: 347 RVGCFAYSPVEGASANDLDGALPDEVREERRARFMEVAEEVSANRMQRKVGKTLKVLIDE 406 Query: 421 HGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 407 VSAEGGIGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 461 >gi|170733145|ref|YP_001765092.1| ribosomal protein S12 methylthiotransferase [Burkholderia cenocepacia MC0-3] gi|238065302|sp|B1JT65|RIMO_BURCC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|169816387|gb|ACA90970.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia cenocepacia MC0-3] Length = 453 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 133/477 (27%), Positives = 219/477 (45%), Gaps = 61/477 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE S D ADL+V+NTC ++A ++ Sbjct: 5 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGSYDGADLVVVNTCGFIDEAVQESLDA 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ + A G ++ P V V GP + + Sbjct: 64 IGEA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQA 114 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + K D F L + G A+L I EGC+ CTFC++P R Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K + Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221 Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298 DL+ +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + + + + R + PD+ I S FI GFPGET++ F +D + + Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YSP G +++ + + V+ ER + E + +G+ ++VLI Sbjct: 337 LDRVGCFAYSPVEGATANDLDGALPDEVREERRARFMEVAEEVSANRMQRKIGKTLKVLI 396 Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 397 DEVSAEGGIGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453 >gi|330950628|gb|EGH50888.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae Cit 7] Length = 440 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 147/474 (31%), Positives = 235/474 (49%), Gaps = 65/474 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 PQ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 3 PQIGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ + I P V V GPQ Y Sbjct: 62 IGE-------AIKENGK--VIVTGCMG-VDANVIRDVHPSVLSVTGPQQY---------- 101 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 102 ---EQVVNAVHDVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 158 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250 RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A +R DG+ K ++L Sbjct: 159 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 218 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L + VRL Y +P + A G ++PYL +P Q S +ILK M R Sbjct: 219 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 273 Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 A+E + + RI++ R PD+ I S FIVGFPGET++DF+ +D + + + F+Y Sbjct: 274 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 332 Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 SP G P +N+L+ V ++VK +R + Q+ + ++ +G+ IEVLI++ Sbjct: 333 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 387 Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++G VGR +P + V + GD I R+TD L+ E++ Sbjct: 388 DDRGA-VGRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEML 440 >gi|163745241|ref|ZP_02152601.1| MiaB-like tRNA modifying enzyme, hypothetical [Oceanibulbus indolifex HEL-45] gi|161382059|gb|EDQ06468.1| MiaB-like tRNA modifying enzyme, hypothetical [Oceanibulbus indolifex HEL-45] Length = 417 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 128/442 (28%), Positives = 205/442 (46%), Gaps = 43/442 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ G + + +V+NTC + +A K + ++R Sbjct: 8 TMGCRLNAYETEAMKELAEQAGLQ--------NAVVVNTCAVTAEAVRKARQDIRKLR-- 57 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K + ++V GC AQ E E P V+VV+G E ++ A + Sbjct: 58 -----KAHPEARLIVTGCAAQTE-PETFNAMPEVDVVIGNT------EKMQGATWQGMAA 105 Query: 151 D----TDYSVEDKFERLS-----IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 D T+ D ++ ++DG R R A++ +Q GCD CTFC++PY RG Sbjct: 106 DFIGETETVQVDDIMSVTETAGHLIDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGN 162 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S VVD+ ++L+D G E+ L G ++ +W G L ++ L + L Sbjct: 163 SRSVPAGVVVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPATPKLGDLVMRILRLVPDLP 221 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ ++ + L++A LMP+LHL +Q G D ILK M RRH + + Sbjct: 222 RLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFAQE 281 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R++RPD+ +D I GFP ET+ F +M LV++ F YS R GTP + M Sbjct: 282 ARALRPDMTFGADIIAGFPTETEAMFENSMKLVEECDLTWLHVFPYSARPGTPAARM-PA 340 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V+ ER L+ Q +A GQ+ VL+E +GR+ V Sbjct: 341 VNGAAIKERAARLRAAGERQVQRHLEAQAGQMHAVLMEN------PHMGRTAQFTEVTFA 394 Query: 442 SKNHNIGDIIKVRITDVKISTL 463 GDI++ RIT + + L Sbjct: 395 VPQVE-GDIVQTRITGISGTQL 415 >gi|88705942|ref|ZP_01103650.1| Fe-S oxidoreductase [Congregibacter litoralis KT71] gi|88699656|gb|EAQ96767.1| Fe-S oxidoreductase [Congregibacter litoralis KT71] Length = 466 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 135/420 (32%), Positives = 192/420 (45%), Gaps = 49/420 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ GY V S DA+L+V+NTC + A E+ + +G Sbjct: 38 SLGCPKALVDSERILSQLKLDGYNIVGSYTDAELVVVNTCGFIDSAKEESLAAIGEA--- 94 Query: 91 KNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 I E G V+V GC+ + A+ E I P V V GP Y + + Sbjct: 95 ----IAENG--RVIVTGCMGKGADAERIRAEHPKVLSVTGPAAYEEVVSAVH-------- 140 Query: 150 VDTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 DY +D F L R A+L I EGC+ C+FC++P RG +SR Sbjct: 141 ---DYVPAPPPKDAFTDLIPASTVRLTPRHY-AYLKISEGCNHRCSFCIIPSMRGDLVSR 196 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254 + V+DEA L+ +GV E+ ++ Q+ +A W+G+ L L +L Sbjct: 197 PIGDVMDEAEALVRSGVRELLVISQDTSAYGVDLKYRTGFWQGRPL---STRMESLCKAL 253 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 E+ VRL Y +P + A G + +PYL +P Q S +LK M R + Sbjct: 254 GELGVWVRLHYVYPYPHVDKIIPLMAEGKI---LPYLDIPFQHASHAVLKRMRRPAATEK 310 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 I RS PDI + S FIVGFPGETD +F +D +D+ + FKYSP G Sbjct: 311 VLHRIHNWRSQCPDITLRSTFIVGFPGETDAEFEELLDFLDEAQLDRVGCFKYSPVTGAA 370 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS 432 + + + V E +K ER LR+Q +S VG+ IEVLI+ + VGRS Sbjct: 371 ANELADHVPEALKEERYERFM--LRQQAISARRLQEKVGREIEVLIDN--VDADGAVGRS 426 >gi|315497159|ref|YP_004085963.1| miab-like tRNA modifying enzyme ylig [Asticcacaulis excentricus CB 48] gi|315415171|gb|ADU11812.1| MiaB-like tRNA modifying enzyme YliG [Asticcacaulis excentricus CB 48] Length = 470 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 140/467 (29%), Positives = 216/467 (46%), Gaps = 55/467 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ +GY AD++V+NTC + A ++ + Sbjct: 10 APKVGFV-SLGCPKALVDSERILTRLKGEGYATAAEYAGADVVVVNTCGFLDSARDESLN 68 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + E G VVV GC+ AE + I R P V V G Y E++E Sbjct: 69 AIGEA-------LAENGK--VVVTGCLG-AEADLIRERFPNVAAVTGAHQYE---EVMEA 115 Query: 143 ARFGKRVVDTDYSVEDKFERL-SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R R+V D F L D G A+L I EGCD C+FC++P RG Sbjct: 116 VR---RIVPAK---PDPFRPLVPENDPGVRLTPKHYAYLKISEGCDHRCSFCIIPSLRGD 169 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 SR + +V+ EA L NGV E+ ++ Q+ +A WR D K +F DL Sbjct: 170 LASRPVDEVLREAEVLAANGVKELLVVSQDTSAYGLDIRYAEGRWRN---DYYKASFEDL 226 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L E+ VR+ Y +P S + A G ++PYL +P Q S ++LK+M R Sbjct: 227 SRGLGELGIWVRMHYVYPYPHVNSVIPLMAEGK---ILPYLDIPFQHASPKVLKAMRRPG 283 Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 + +DRI S R PD+ + S F+VGFPGET+ DF +D ++ + +F Y Sbjct: 284 NQ---DKTLDRILSWREICPDLTLRSTFVVGFPGETEADFNLLLDWLEAAQIDRVGAFAY 340 Query: 368 SPRLGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEK---H 421 G ++ + V E VK +RL + + ++ Q++ VGQ+++VL+++ Sbjct: 341 ENVEGAAARDLPDHVPEEVKQDRLARFMAVASRISAQKLQNK---VGQVVDVLVDEIRSD 397 Query: 422 GKEKGKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466 G + G +P + + + GD K ++T L+GE Sbjct: 398 GVAVARTKGDAPEIDGHIYLKGFTGLSAGDYAKAKVTRADAYDLWGE 444 >gi|254372338|ref|ZP_04987829.1| hypothetical protein FTCG_01405 [Francisella tularensis subsp. novicida GA99-3549] gi|151570067|gb|EDN35721.1| hypothetical protein FTCG_01405 [Francisella novicida GA99-3549] Length = 439 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 130/457 (28%), Positives = 215/457 (47%), Gaps = 52/457 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC N+ DS R+ ++GY+ V+S D+AD++++NTC A ++ Sbjct: 4 IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G I E G +LV GC+ + + I + P V + GPQ Y L +E Sbjct: 63 VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + D+ + + + Y ++L I EGC+ CTFC++P RG Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 SRS+ ++ EA KL + GV E+ ++ Q+ +A W K + DL Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEY---QSNIIDLA 219 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L ++ RL Y +P + A G + +PYL +P+Q S +LK M R Sbjct: 220 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVPLQHSSPEVLKRMKRPAH 276 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I++ R + PDI I S FIVGFPGET+ DF +D +K + FKYS Sbjct: 277 TQKTLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVE 336 Query: 372 GTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 G + + E VK +RL + LQ ++ ++ VG +V+I+ K++ Sbjct: 337 GAKANQFDNLISEEVKQQRLDEFMGLQAQISADKLQ---RFVGTEQQVIIDVINKDENYA 393 Query: 429 VGRSPWL------QSVVLNS--KNHNIGDIIKVRITD 457 +GR+ + Q ++ ++ +N +G+ V IT+ Sbjct: 394 IGRTKYDAPEVDGQVIIGDALERNLKVGEFATVEITE 430 >gi|219854681|ref|YP_002471803.1| hypothetical protein CKR_1338 [Clostridium kluyveri NBRC 12016] gi|219568405|dbj|BAH06389.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 451 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 133/439 (30%), Positives = 219/439 (49%), Gaps = 30/439 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + S YE V AD I++NTC E A ++ + + Sbjct: 15 SLGCDKNRVDSEIILGNVKS-AYEIVTDPKLADFIIINTCGFIESAKQESIDTILEMSQY 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K G +VV GC+AQ G E++ P +++++G Y +L E + Sbjct: 74 KGKYNCRG----IVVTGCLAQRYGIELMELLPEIDIMLGVNDYDKLVE-----NINNFIS 124 Query: 151 DTDYSVED-KFERLSIVDGG-YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 D + + + L+I +G + TA+L I EGCD +CT+C++P RG SRS+ Sbjct: 125 DKQNKIHNCGYSDLNINEGKRILTTKSHTAYLRIAEGCDNYCTYCIIPKIRGKYRSRSIE 184 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++ E +L GV E+ L+ Q+ + G+D K +L+ S+S+I+G+ +R Sbjct: 185 NILQECNELSLRGVKEVILIAQDTTRY---GIDLYNKKMLPELMRSISKIEGIEWIRLLY 241 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P ++++ +I D + Y+ +P+Q SD ILK M RR + + I+ +R Sbjct: 242 CYPEEITEDIIDEIALNDKVCNYIDIPLQHISDNILKLMGRRGRKKDILRNINELRKKIN 301 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 DI+I + IVGFPGE+++DF+ + ++ I + FKYS GT M +QV E +K Sbjct: 302 DISIRTTIIVGFPGESEEDFKELKNFIENIKFDNLGVFKYSREEGTRAYKMKDQVSEELK 361 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440 R L+ LQK + S +G +VL+E GK++G GR +P + V+ Sbjct: 362 TAREGELMMLQKHI---IYSMQKYKIGNKYKVLVE--GKKEGVWYGRNYAMAPDIDGVIY 416 Query: 441 --NSKNHNIGDIIKVRITD 457 + K +G +I V+IT+ Sbjct: 417 IKSKKELKVGTMIDVKITN 435 >gi|208780420|ref|ZP_03247761.1| conserved hypothetical protein [Francisella novicida FTG] gi|208743788|gb|EDZ90091.1| conserved hypothetical protein [Francisella novicida FTG] Length = 445 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 130/457 (28%), Positives = 215/457 (47%), Gaps = 52/457 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC N+ DS R+ ++GY+ V+S D+AD++++NTC A ++ Sbjct: 10 IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 68 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G I E G +LV GC+ + + I + P V + GPQ Y L +E Sbjct: 69 VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 115 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + D+ + + + Y ++L I EGC+ CTFC++P RG Sbjct: 116 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 168 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 SRS+ ++ EA KL + GV E+ ++ Q+ +A W K + DL Sbjct: 169 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEY---QSNIIDLA 225 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L ++ RL Y +P + A G + +PYL +P+Q S +LK M R Sbjct: 226 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVPLQHSSPEVLKRMKRPAH 282 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I++ R + PDI I S FIVGFPGET+ DF +D +K + FKYS Sbjct: 283 TQKTLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVE 342 Query: 372 GTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 G + + E VK +RL + LQ ++ ++ VG +V+I+ K++ Sbjct: 343 GAKANQFDNLISEEVKQQRLDEFMGLQAQISADKLQ---RFVGTEQQVIIDVINKDENYA 399 Query: 429 VGRSPW------LQSVVLNS--KNHNIGDIIKVRITD 457 +GR+ + Q ++ ++ +N +G+ V IT+ Sbjct: 400 IGRTKYDAPEVDGQVIIGDALERNLKVGEFATVEITE 436 >gi|330959246|gb|EGH59506.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 447 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 146/474 (30%), Positives = 235/474 (49%), Gaps = 65/474 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 10 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ + I P V V GPQ Y Sbjct: 69 IGE-------AIKENGK--VIVTGCMG-VDASVIRNVHPSVLSVTGPQQY---------- 108 Query: 144 RFGKRVVDTDYSV-EDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V + + ++D G A+L I EGC+ C+FC++P Sbjct: 109 ---EQVVNAVHDVVPPRHDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSM 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250 RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A +R DG+ K ++L Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPIKTRMTEL 225 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L + VRL Y +P + A G ++PYL +P Q S +ILK M R Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280 Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 A+E + + RI++ R PD+ I S FIVGFPGET++DF+ +D + + + F+Y Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339 Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 SP G P +N+L+ V ++VK +R + Q+ + ++ +G+ IEVLI++ Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394 Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468 E+G VGR +P + V + GD I R+TD L+ E++ Sbjct: 395 DERGA-VGRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEVL 447 >gi|256819862|ref|YP_003141141.1| MiaB-like tRNA modifying enzyme YliG [Capnocytophaga ochracea DSM 7271] gi|256581445|gb|ACU92580.1| MiaB-like tRNA modifying enzyme YliG [Capnocytophaga ochracea DSM 7271] Length = 433 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 132/448 (29%), Positives = 215/448 (47%), Gaps = 39/448 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87 V + GC NVYDS + + G E V+ +++V+NTC I E + + L + Sbjct: 13 VVTLGCSKNVYDSEVLMGQLKAGGKEVVHEQK-GNIVVINTCGFINNAKEESINTILDYV 71 Query: 88 RNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + KE G + V V GC+++ ++ + P V+ G LP LL Sbjct: 72 QQ------KEAGLVDKVFVMGCLSERYKPDLEKEIPDVDQYFGTS---ELPALL------ 116 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +V+ DY E ERL+ Y A+L I EGCD+ C+FC +P RG +S Sbjct: 117 -KVLGADYKHELIGERLTTTPKNY-------AYLKISEGCDRPCSFCAIPLMRGAHLSTP 168 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265 + +V EA KL GV E+ L+ Q++ + GLD +K +DLL +L +++G+ +R Sbjct: 169 IEALVTEAEKLAAKGVKELILIAQDITYY---GLDLYKKRALADLLRALVKVEGIEWIRI 225 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 + P +++ + YL +P+Q SD IL SM R T + +++ + R Sbjct: 226 HYAFPTGFPMDVLEVMKTEPKICNYLDIPLQHISDSILASMKRGTTQAKTTKLLKKFREA 285 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P++AI + IVG+PGET++DF+ D V ++ + + F YS T + + V E Sbjct: 286 IPEMAIRTTLIVGYPGETEEDFQKLKDFVKEMRFDRLGCFTYSHEENTTAYALEDDVPEE 345 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW-----LQSVVL 440 VK R + + + N VG+ LI++ KE VGR+ + V++ Sbjct: 346 VKLARANEIMEIQSQISWELNQEKVGKTFRCLIDR--KEGNYFVGRTEYDSPDVDNEVLI 403 Query: 441 NSKNH--NIGDIIKVRITDVKISTLYGE 466 ++K H IGD ++I + LYGE Sbjct: 404 DAKKHYVKIGDFTDIKIIEATDYDLYGE 431 >gi|78066551|ref|YP_369320.1| putative 2-methylthioadenine synthetase [Burkholderia sp. 383] gi|123756160|sp|Q39FU0|RIMO_BURS3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|77967296|gb|ABB08676.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia sp. 383] Length = 453 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 133/477 (27%), Positives = 219/477 (45%), Gaps = 61/477 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 5 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ + A G ++ P V V GP + + Sbjct: 64 IGEA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQA 114 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + K D F L + G A+L I EGC+ CTFC++P R Sbjct: 115 V-HSHLPKP--------HDPFTDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K + Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221 Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298 DL+ +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + + + + R + PD+ I S FI GFPGET++ F +D + + Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YSP G + + + ++V+ ER + E + VG+ ++VLI Sbjct: 337 LDRVGCFAYSPVEGATANELDGALPDDVREERRARFMEVAEEVSANRIQRKVGKTLKVLI 396 Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 397 DEVSAEGGIGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453 >gi|29840033|ref|NP_829139.1| MiaB-like tRNA modifying enzyme [Chlamydophila caviae GPIC] gi|29834380|gb|AAP05017.1| MiaB-like tRNA modifying enzyme [Chlamydophila caviae GPIC] Length = 421 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 124/448 (27%), Positives = 218/448 (48%), Gaps = 54/448 (12%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 GC++N Y+ D GY + ++ DL ++NTC + A R+ Sbjct: 16 GCRVNQYEIQSYRDQLNFLGYREITDPEEPCDLCIVNTCAVTGSAESSG-------RHAV 68 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGE---EILRRSPIVNVVVGPQTYYRL-PELLERARFGK 147 ++ D +V+ GC+ +A+ E + R+ +V+ Q ++ P + + F Sbjct: 69 RQVCRQNPDAFLVITGCLGEADKEFFNSLERQCLLVSNKEKHQLMEKIFPSIQDLPEFRI 128 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 R FE G +R AF+ +Q+GC+ FC++C++PY RG SR + Sbjct: 129 R----------SFE-------GKSR-----AFIKVQDGCNSFCSYCIIPYLRGRSRSRPI 166 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +++DE L+ G E+ + G NV ++ +G + + L+ + EIKG+ R+R ++ Sbjct: 167 QEILDEISGLVSQGYQEVVIAGINVGDYQDEGK-----SLAHLIRQVDEIKGIERIRISS 221 Query: 268 SHPRDMSDCLIKAHGDLDVLMP------YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 P D+ + L DVL+ HL +QSGS+ ILK MNR+++ ++ +D Sbjct: 222 IDPEDVQEDL------RDVLLSGRHTCHSSHLVLQSGSNAILKRMNRKYSRSDFLDCVDA 275 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +RSV P A ++D IVGFPGETD DF T+ +++ +G+ + F +SPR T Q Sbjct: 276 LRSVDPRYAFTTDVIVGFPGETDQDFEDTLRIIEDVGFIKVHIFPFSPRERTKAYTFASQ 335 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + ++V ER L +E +G+ + VL+E+ ++G G SP+ V Sbjct: 336 LPQSVINERKKHLAHVAKEIARREMAQRIGETVSVLVER--IDQGIAYGHSPYFDMVGFP 393 Query: 442 SKNH-NIGDIIKVRITDVKISTLYGELV 468 + + + ++ V I V+ TL G+ + Sbjct: 394 ADSTVAVNTLVNVYIDAVEEDTLKGKRI 421 >gi|329942876|ref|ZP_08291655.1| RNA modification enzyme, MiaB family protein [Chlamydophila psittaci Cal10] gi|332287469|ref|YP_004422370.1| MiaB-like tRNA modification enzyme [Chlamydophila psittaci 6BC] gi|313848048|emb|CBY17046.1| conserved hypothetical protein [Chlamydophila psittaci RD1] gi|325506835|gb|ADZ18473.1| MiaB-like tRNA modification enzyme [Chlamydophila psittaci 6BC] gi|328815136|gb|EGF85125.1| RNA modification enzyme, MiaB family protein [Chlamydophila psittaci Cal10] gi|328914717|gb|AEB55550.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Chlamydophila psittaci 6BC] Length = 460 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 116/391 (29%), Positives = 191/391 (48%), Gaps = 17/391 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + GYE + +AD ++LNTC + A ++ +L RI + Sbjct: 22 SLGCSRNLVDSEVMLGILLKAGYEATELLQEADYLILNTCGFLKAARDESTDYLQRIIDK 81 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K K +++ GC+ EE+ P V+ V+G + +E G+++ Sbjct: 82 KKETAK------IILTGCMVSKHKEELKPWLPYVHYVLGSGDVEHILSAIESKESGEKLS 135 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y + R Y A+L I EGC K C FC++P +G S+ L QV Sbjct: 136 SKSYLEMGEVPRKLSTPKHY-------AYLKIAEGCRKRCAFCIIPTIKGGLRSKPLEQV 188 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGL--DGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 + E R L+ GV E+ L+ Q++ + GK L D + C S L L E G +R Sbjct: 189 IKEFRLLLKMGVKEVILIAQDLGDY-GKDLSKDRKSCLHSVLREMLKE-PGDYWIRMLYL 246 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P ++ D +I L+PY+ +P+Q ++RILK M R + + ++ ++R+ P Sbjct: 247 YPDEVDDTIIDLMEKDRRLLPYVDIPLQHINNRILKKMLRTTSREQILDLLTKLRTRIPH 306 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + I S IVGFPGETD++F+ +D V + F YS G+ + M Q+ ++VK+ Sbjct: 307 VYIRSSLIVGFPGETDEEFQELVDFVGEGWIDNLGIFSYSQEKGSLAAEMPYQIPQSVKS 366 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 +RL L + ++ N VG+ +E +I+ Sbjct: 367 KRLKILSQTQKKNVEKHNKQFVGKTVEAVID 397 >gi|328676442|gb|AEB27312.1| Ribosomal protein S12p Asp88 methylthiotransferase [Francisella cf. novicida Fx1] Length = 435 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 128/450 (28%), Positives = 215/450 (47%), Gaps = 42/450 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC N+ DS R+ ++GY+ V+S D+AD++++NTC A ++ Sbjct: 4 IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLD 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G I E G +LV GC+ + + I + P V + GPQ Y L +E Sbjct: 63 VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + D+ + + + Y ++L I EGC+ CTFC++P RG Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIK 258 SRS+ ++ EA KL GV E+ ++ Q+ +A+ + K + DL +L ++ Sbjct: 163 KSRSIDNIMKEAEKLKKAGVKELLVISQDTSAYGVDIKYKSNKEYQSNIIDLATALGDLD 222 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 RL Y +P + A G + +PYL +P+Q S +LK M R + Sbjct: 223 MWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVPLQHSSPEVLKRMKRPAHTQKTLDR 279 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I++ R + PDI I S FIVGFPGET+ DF +D +K + FKYS G + Sbjct: 280 INKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVEGAKANQF 339 Query: 379 LEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 + E +K +RL + LQ ++ ++ VG +V+I+ K++ +GR+ + Sbjct: 340 DNLISEEIKQQRLDEFMGLQAQISADKLQ---RFVGTEQQVIIDVINKDENYAIGRTKYD 396 Query: 436 ------QSVVLNS--KNHNIGDIIKVRITD 457 Q ++ ++ +N +G+ V IT+ Sbjct: 397 APEVDGQVIIGDALERNLKVGEFATVEITE 426 >gi|149912565|ref|ZP_01901099.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. AzwK-3b] gi|149812971|gb|EDM72797.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. AzwK-3b] Length = 419 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 126/444 (28%), Positives = 206/444 (46%), Gaps = 55/444 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ G E + +++NTC + +A K + R+R Sbjct: 9 TLGCRLNAYETEAMKELSQQAGLE--------NAVIVNTCAVTAEAVRKARQEIRRLR-- 58 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144 +E ++V GC AQ E E P V+ V+G P T+ L A Sbjct: 59 -----RENPTARLIVTGCAAQTE-PETFTAMPEVDAVIGNTEKMQPSTWAGLA-----AD 107 Query: 145 FGKRV----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 F VD SV + L +DG R R A++ +Q GCD CTFC++P+ RG Sbjct: 108 FIGETEACQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPFGRG 162 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S VVD+ ++L+D G E+ L G ++ +W G L E ++ L + L Sbjct: 163 NSRSVPAGVVVDQIKRLVDRGFNEVVLTGVDLTSW-GADLPAEPRLGDLVMRILKLVPDL 221 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ ++ D L++A LMP+LHL +Q G D ILK M RRH + + ++ Sbjct: 222 PRLRISSIDSIEVDDNLMQAIATEKRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFVE 281 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R +RP++ +D I GFP ET+ F ++ LV++ F YSPR GTP + M Sbjct: 282 EARGLRPEMTFGADIIAGFPTETEAAFANSLKLVEECDLTWLHVFPYSPRPGTPAARM-P 340 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWL 435 QV+ + ++E+ A Q+ L E+ G+ + +GR+ Sbjct: 341 QVN-----------GRDIKERAARLRAAGERQVTRHLAEQQGRTHYILMESARMGRTEQF 389 Query: 436 QSVVLNSKNHNIGDIIKVRITDVK 459 V ++ + + G I+ I + Sbjct: 390 TEVTFDA-DQSEGHIVTATIAGTR 412 >gi|171472297|gb|ACB46852.1| MiaB [Pseudomonas stutzeri] Length = 440 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 139/469 (29%), Positives = 222/469 (47%), Gaps = 57/469 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P FV S GC DS R+ ++GY+ V + DAD++V+NTC + A + Sbjct: 5 PTVGFV-SLGCPKATVDSERILTQLRTEGYQIVPTYQDADVVVVNTCGFIDSAKAESLDA 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G I E G V+V GC+ AE + I P V V GPQ Y Sbjct: 64 IGE-------AIAENGK--VIVTGCMGVAE-DNIRNVHPSVLAVTGPQQY---------- 103 Query: 144 RFGKRVVDTDYSV------EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 ++VV+ + V D F L G R A+L I EGC+ C+FC++P Sbjct: 104 ---EQVVNAVHEVVPPNIDHDPFLDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCIIPS 159 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246 RG +SR + V+ EA +L+ GV EI ++ Q+ +A W G+ + K Sbjct: 160 MRGKLVSRPVGDVLSEAERLVKAGVKEILVISQDTSAYGVDVKYKTDFWNGQPV---KTR 216 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 +L +LS + VRL Y +P + A G L+PYL +P Q S ++LK+M Sbjct: 217 MLELCQALSSMGVWVRLHYVYPYPNVDDVIPLMAAGK---LLPYLDIPFQHASPKVLKAM 273 Query: 307 NRRHTAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 R A+E + + I + R + P++ I S FIVGF GET++DF+ +D + + + Sbjct: 274 KR--PAFEDKTLARIKQWREICPELTIRSTFIVGFLGETEEDFQYLLDWLTEAQLDRVGC 331 Query: 365 FKYSPRLGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 F+YSP G P + LE V + +K +R + + + +GQ +EVLI++ + Sbjct: 332 FQYSPVEGAPAEELGLEPVPDEIKQDRWDRFMAHQQAISAARLERKIGQELEVLIDEVDE 391 Query: 424 EK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 + G+ +P + +V + + GD ++VR+T L+ E + Sbjct: 392 DGAIGRSCADAPEIDGLVYIDSEQPLQAGDKVRVRVTHSDEYDLWAEAI 440 >gi|325294065|ref|YP_004279929.1| methylase protein [Agrobacterium sp. H13-3] gi|325061918|gb|ADY65609.1| putative methylase protein [Agrobacterium sp. H13-3] Length = 424 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 117/400 (29%), Positives = 187/400 (46%), Gaps = 30/400 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M G + +++NTC + +A + Sbjct: 6 VITFGCRLNTYESEVMRAEAEKAGLN--------NAVLVNTCAVTGEAVRQARQ------ 51 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142 ++ ++V GC AQ E ++ P V+ V+G + +Y LP+ Sbjct: 52 -AIRRARRDNPHARIIVTGCAAQTE-KQTFAEMPEVDAVLGNEEKLKSASYRALPDFGVS 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A RV D + + +DG V AF+ +Q GCD CTFC++PY RG Sbjct: 110 AEEKLRVNDIMSIKATAPQMVKHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + VV++AR+L+++G CEI L G + ++ G L GE L ++ ++R Sbjct: 164 RSVPMGAVVEQARRLVESGYCEIVLTGVDATSY-GADLPGEPSLGLLAKTLLKQVPEILR 222 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ + L+ MP+LHL +Q G D ILK M RRH + + + Sbjct: 223 LRLSSIDSIEADHHLMDLIAGEARFMPHLHLSLQHGDDMILKRMKRRHLRADAIRFCHEV 282 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RS+RPDIA +D I GFP E ++ F L ++ G + F YSPR GTP + M Q+ Sbjct: 283 RSLRPDIAFGADMIAGFPTENEEMFENAATLAEECGISSLHVFPYSPRAGTPAARM-PQL 341 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 D + ER L+++ ++ VG +L+E G Sbjct: 342 DRALVKERAARLRERGEALRLVHLQNMVGSTQTILVENTG 381 >gi|317154020|ref|YP_004122068.1| RNA modification enzyme, MiaB family [Desulfovibrio aespoeensis Aspo-2] gi|316944271|gb|ADU63322.1| RNA modification enzyme, MiaB family [Desulfovibrio aespoeensis Aspo-2] Length = 447 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 120/413 (29%), Positives = 196/413 (47%), Gaps = 45/413 (10%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYE-RVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 RF+ + GC++N Y++ + + + G + +ADLI++N+C + A V Sbjct: 3 RFYTATLGCKINQYETRSIAEAWTGHGQAFETGAPQEADLILINSCAV---TANAVADLR 59 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV---------VGPQTYYR 135 +R+L + G ++V GC AQ +E+ +V VV GP Sbjct: 60 QTVRSLHRASPTAG----IIVTGCAAQVMADELAGLPGVVRVVPQADKGALLAGPAAPPV 115 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 P +L D + F SI GY+R R V + +Q+GC CT+C+V Sbjct: 116 SPAVL----------DGEAGALGGFAPFSIT--GYSRARAV---VKVQDGCSHHCTYCIV 160 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL- 254 P TRG +SR + VV EA +L+D+G E+ + G N+ + G+GL ++ F DLL L Sbjct: 161 PQTRGPSVSRPVDAVVAEAVRLLDSGFRELVISGINLRHY-GRGLQ-DRTDFWDLLARLD 218 Query: 255 ----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 G RLR ++ P + + ++ P LHL +QSG +L++M R H Sbjct: 219 RELAPRWAGRARLRVSSVEPGQLDHKALDTLAGSSMVCPQLHLSLQSGDPDVLRAMGRGH 278 Query: 311 TAYEYRQIID---RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 Y+ + +D R+ P I + +D I GFPGE + F T+ L + A F Y Sbjct: 279 --YDPQGAVDFLIRLGEAWPVIGLGADLITGFPGEDEAGFENTLTLCRVLPLTYAHVFPY 336 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ-IIEVLIE 419 S R GT + M QV V+ ER L+ + ++ +F + +G+ ++VL++ Sbjct: 337 SERPGTAAATMAGQVAVPVRKERATRLRALVSRRKRAFGERLLGRPCLDVLVQ 389 >gi|149926143|ref|ZP_01914405.1| hypothetical protein LMED105_01383 [Limnobacter sp. MED105] gi|149824961|gb|EDM84173.1| hypothetical protein LMED105_01383 [Limnobacter sp. MED105] Length = 453 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 142/473 (30%), Positives = 218/473 (46%), Gaps = 59/473 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P FV S GC + DS R+ +GY S + ADLIV+NTC + A ++ Sbjct: 12 PSVGFV-SLGCPKALVDSERILTQLKVEGYNVSASYEGADLIVVNTCGFIDSAVQESLDA 70 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPEL 139 +G + V+V GC+ G E I + P V V GP E+ Sbjct: 71 IGEAMHANGK---------VIVTGCLGAKNGNEGKDMITKLHPKVLAVTGPHATE---EV 118 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 ++ D F L + D G A+L I EGC+ CTFC++P R Sbjct: 119 MQAVHIHLP------KPHDPFIDL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMR 171 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLL 251 G +SR + +V+ EA L GV E+ ++ Q+ +A+ R ++G K F L Sbjct: 172 GDLVSRPIGEVIREAESLKKAGVKELLVVSQDTSAYGVDLKYRTDFVNGRPVKTQFQQLA 231 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L E+ VR+ Y +P + A G + +PYL +P Q +LK M R + Sbjct: 232 EELGELGIWVRMHYVYPYPHVDRVVPLMAEGKI---LPYLDIPFQHSHPDVLKRMKRPAS 288 Query: 312 AYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + I+RIR+ R PDI + S FI GFPGET+D+F+ +D +++ + F YS Sbjct: 289 G---ERNIERIRAWRETCPDITLRSTFITGFPGETEDEFKHLLDFIEEAQLDRVGVFAYS 345 Query: 369 PRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 P G + + V E VK E RL+ LQ+K+ +S N+A +G++++VL+++ +E Sbjct: 346 PVDGAVANALDNPVPEEVKEERRARLMELQEKI---SLSRNEAKLGKVMQVLVDETDEE- 401 Query: 426 GKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGELV 468 +V RS P + V ++ GD I V I D L+G +V Sbjct: 402 -GIVARSKADAPEIDGNVFIPMPEDKARQPKPGDFINVLIDDCDEHDLWGRIV 453 >gi|294673381|ref|YP_003573997.1| MiaB family RNA modification enzyme [Prevotella ruminicola 23] gi|294472539|gb|ADE81928.1| RNA modification enzyme, MiaB family [Prevotella ruminicola 23] Length = 462 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 120/390 (30%), Positives = 192/390 (49%), Gaps = 15/390 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ M G + AD+ ++NTC + E A +K + R+ Sbjct: 37 TLGCKLNFSETSTFGKMLQDLGVSTAQKGEQADICLINTCSVTEVADKKCRQAIHRL--- 93 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E VVV GC AQ E +E+ + V++V+G L + L A G Sbjct: 94 ----VRENPGAFVVVTGCYAQLEADEVAKIEG-VSLVLGSNEKANLVQFLSDAWTGAPTA 148 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + + NR R FL +Q+GCD FCT+C +PY RG + +++ + Sbjct: 149 KYYREKTKDIKSFAPSCSKGNRTR---YFLKVQDGCDYFCTYCTIPYARGFSRNPTIASL 205 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V +A++ G EI L G N+ + GK GEK F DL+ +L ++G+ R R ++ P Sbjct: 206 VAQAQEAAAEGGKEIVLTGVNIGDF-GK-TTGEK--FIDLVKALDGVEGIQRYRISSLEP 261 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 +SD LI+ MP+ H+P+QSGS+ +LK M+R + + + I RI+ + PD Sbjct: 262 DLISDELIEYCAKSRAFMPHFHIPLQSGSNTVLKLMHRHYDRELFAEKIHRIKELMPDAF 321 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I D +VG GET + F T +D + Q F YS R GT ++ V E K +R Sbjct: 322 IGVDVMVGCRGETPECFEETYTFLDSLDVTQLHVFPYSERPGTSALSIPYVVPEKEKKQR 381 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + L + ++ +F + +GQ EVL EK Sbjct: 382 VKRLLELSDQKTHAFYERYIGQQAEVLFEK 411 >gi|194882251|ref|XP_001975226.1| GG22199 [Drosophila erecta] gi|190658413|gb|EDV55626.1| GG22199 [Drosophila erecta] Length = 557 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 131/468 (27%), Positives = 226/468 (48%), Gaps = 47/468 (10%) Query: 18 VDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 + + ++P Q+ FVK++GC N DS M + GY R++ ++ADL +LN+C ++ Sbjct: 63 IHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGY-RLSGKEEADLWLLNSCTVKNP 121 Query: 76 AAEKVYSFLGRIR-NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQT 132 + + +F I+ ++N + VVVAGCV Q +S +N V+G Q Sbjct: 122 SED---TFRNEIKLGMRNGK-------HVVVAGCVPQGAP-----KSDYLNGLSVIGVQQ 166 Query: 133 YYRLPELLERARFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 R+ E++E G V + V + + + RK + ++I GC C Sbjct: 167 IDRVVEVVEETLKGNSVQLLQNKKKVHGRRVAGAPLSLPKVRKNQLIEIISINSGCLNQC 226 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 T+C + RG S +VV+ AR+ G CEI L ++ A+ G+ + + +L Sbjct: 227 TYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAY-GRDIGS---SLPEL 282 Query: 251 LYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 L+ L E+ G+ Y H +++ L + +LH+PVQSGSD + Sbjct: 283 LWQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYAFLHVPVQSGSDSV 337 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L M R + ++ ++D +R P + I++D I GFP ET+ DF TM L K + Sbjct: 338 LGEMKREYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEADFEETMTLCAKYRFPSL 397 Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEK 420 F ++ PR GTP + M E++ N+ +R K+L + S+ VG+I VL+ + Sbjct: 398 FINQFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAKRVGEIYTVLVTE 452 Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +K VG + + V+L +++ +G + VRIT ++ GE++ Sbjct: 453 VSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEIL 500 >gi|302343165|ref|YP_003807694.1| RNA modification enzyme, MiaB family [Desulfarculus baarsii DSM 2075] gi|301639778|gb|ADK85100.1| RNA modification enzyme, MiaB family [Desulfarculus baarsii DSM 2075] Length = 428 Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 111/399 (27%), Positives = 192/399 (48%), Gaps = 19/399 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +RF + S GC++N ++ + D + G+ RV DL VL TC + A+ + Sbjct: 4 KRFCLHSLGCKVNQAEAAHLADELTALGWTRVPEARRGDLAVLLTCAVTASASRQS---- 59 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + + G VV +GC QAE + L +VVG +L +++R Sbjct: 60 ---RQMARRLARVAGPESVVASGCGVQAEAQAYLAEG---VIVVGRAELAQLARIIDRQA 113 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + ++ + + + G R RG L +Q+GC+ C +C+VP TRG S Sbjct: 114 WPEQ--GPPPPPDAGAFCMGALQPGELRGRG---LLKVQDGCNAGCAYCIVPATRGRPRS 168 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263 L+Q V R + G EI L G ++ W GLD K ++LL ++ RL Sbjct: 169 LPLAQAVAAFRGMAQAGAQEIVLTGIHLGRW---GLDLAGKPRLAELLEAMLAADDRPRL 225 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ ++ L++ L P+ HLP+QSG DR+LK+M R ++A +Y Q++ + Sbjct: 226 RLSSLESHEIEPRLVQLAAAEPRLCPHFHLPLQSGDDRVLKAMGRPYSAAQYAQVVRDLA 285 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P + +D +VG PGE R T++L++ + + F YSPR GT M + Sbjct: 286 AALPSPCLGADVLVGLPGEDHAAHRQTLELLESLPISYLHVFPYSPRPGTRAVEMPGRPS 345 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 + +R L++ + + ++F + +G+ +EV++E G Sbjct: 346 GHEVGQRAAVLRRLGQAKHLAFLRSRIGRRLEVVVEGGG 384 >gi|268535520|ref|XP_002632893.1| Hypothetical protein CBG15101 [Caenorhabditis briggsae] Length = 437 Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 126/446 (28%), Positives = 220/446 (49%), Gaps = 39/446 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 V Q+ +V+++GC N DS M + GY+ + ++AD+ VLN+C ++ + ++ Sbjct: 7 VGQKVWVRTWGCSHNTSDSEYMAGLLHKAGYDVLKEGENADVWVLNSCTVKTPSEQQA-- 64 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLE 141 NL ++G +++AGCV+QA E + NV +VG + R+ E++E Sbjct: 65 -----NNLVVQGQEQGKK--IIMAGCVSQAAPSEPW----LQNVSIVGVKQIDRIVEVVE 113 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G +V + D L + RK + L+I GC CT+C RG Sbjct: 114 ETLKGNKVRLLTRNRPDALLSLPKM-----RKNELIEVLSISTGCLNNCTYCKTKMARGD 168 Query: 202 EISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--- 257 +S L +V++AR D GV E+ L +++ AW G+ ++ DLL +L ++ Sbjct: 169 LVSYPLEDLVEQARAAFHDEGVKELWLTSEDLGAW-GRDIN---LVLPDLLNALVKVIPD 224 Query: 258 -----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 G+ Y H ++++ L + +LH+PVQS SD +L M R ++ Sbjct: 225 GCMMRLGMTNPPYILDHLEEIAEILNNPK-----VYAFLHIPVQSASDAVLTDMKREYSR 279 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + QI D + P+I I++D I+ FP ET +DF +M+LV K + F +Y PR G Sbjct: 280 RHFEQIADYMIENVPNIYIATDMILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSG 339 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 TP + L+++D V+A + +L F + +G+I VL+ + +K VG + Sbjct: 340 TPAAR-LKKID-TVEARKRTAAMSELFRSYTRFTEDRIGEIHNVLVTEIAADKIHGVGHN 397 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDV 458 + +++ ++ +G+ I+VRIT V Sbjct: 398 KSYEQILVPLEHCKMGEWIEVRITSV 423 >gi|189183909|ref|YP_001937694.1| hypothetical protein OTT_1002 [Orientia tsutsugamushi str. Ikeda] gi|189180680|dbj|BAG40460.1| hypothetical protein OTT_1002 [Orientia tsutsugamushi str. Ikeda] Length = 423 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 117/440 (26%), Positives = 216/440 (49%), Gaps = 32/440 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S ++ ++ ++D+ ++V NTC + ++A + + + + Sbjct: 15 VITFGCRLNAYESEIIKQNL------KIANLDN--VVVFNTCTVTQEAERQAKQAIRKAK 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +E ++ ++V GC AQ ++ + P VN ++G + PE + + Sbjct: 67 -------RENPNIKIIVTGCAAQ-NNPDLFNQMPQVNKILGNEEKL-YPEFYQFDENKIQ 117 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V D E +S DG AF+ +Q GC+ CTFC++PY RG S + Sbjct: 118 VNDIMSIQETATHMISNFDGK------TRAFIQVQNGCNHRCTFCIIPYARGNSRSVPIG 171 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 + + + LI+ G EI G ++ ++ G L G + L + L RLR ++ Sbjct: 172 VITQQIQLLINQGYKEIVFTGVDLTSY-GADLPGSPTLAQMIKRVLMLVPALPRLRLSSI 230 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++ L K D LMP+ H+ +Q+G + ILK M RRHT + + +++R + PD Sbjct: 231 DIAEIDQELFKLMTDEPRLMPHFHISLQAGDNMILKRMKRRHTREQIIEFCNKMRKILPD 290 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + +D I GFP ET+ F +++L+ + G F YS R TP S M QV ++++ Sbjct: 291 ASFGADMIAGFPTETEIMFNNSLNLISETGIQYLHVFPYSERENTPASKM-PQVQKHIRK 349 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 +R L+ + ++Q F +G+I++VL+EK + G S + ++ IG Sbjct: 350 KRAQLLRNEGKKQLQLFFQQQIGKIVKVLVEK------EQFGHSENFIPTYIATR-QTIG 402 Query: 449 DIIKVRITDVKISTLYGELV 468 +I+ V++T + + G +V Sbjct: 403 EIVNVKLTSINNDHMIGTVV 422 >gi|297171740|gb|ADI22732.1| 2-methylthioadenine synthetase [uncultured verrucomicrobium HF0500_27H16] Length = 439 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 115/394 (29%), Positives = 197/394 (50%), Gaps = 22/394 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V + GC++N ++ + D +GY+ V ADL V+NTC + A K S + + Sbjct: 13 VHTLGCRLNQSETNLIRDQLVDRGYDIVPFGATADLAVINTCTVTRTADSKCRSAIRQF- 71 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFG 146 + + V GC +Q +EI S I V+V++G Q + + + A+ Sbjct: 72 ------TRRNPAAITAVVGCYSQMGYKEI---SEIEGVDVIIGNQDKLNVLDYVGEAKNE 122 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V+ D D F + +N++ A L IQ+GCD CTFC++P+ RG SR Sbjct: 123 VPVIVRDRIDRDDFTISFAGELPFNQR----ANLKIQDGCDFMCTFCIIPFARGRARSRD 178 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +++EA+ L+ GV E+ + G N+ ++ G +G D++ +L ++ GL R+R + Sbjct: 179 FQNLLEEAQNLVARGVRELIITGVNIGTYKHSG-EG----IVDIVDALDDLDGLTRIRIS 233 Query: 267 TSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 + P + + L + D L+PYLH+P+Q+GSD IL++M R+++ E+ + + + Sbjct: 234 SIEPTTIPEILFERMRDPSHALLPYLHIPLQAGSDEILEAMRRKYSVQEFLDFLAKADAA 293 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD+ I +D +VGFPGETD+ F T +A F YS R GTP + + V Sbjct: 294 VPDLCIGTDLMVGFPGETDEHFNQTCQTFLDGPFAYCHVFTYSERNGTPAAKRDDHVPVP 353 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 + R L++ ++ F + + + VL E Sbjct: 354 ERKRRSAHLRRLNATRRHDFYERFLDREFPVLFE 387 >gi|300871406|ref|YP_003786279.1| putative 2-methylthioadenine synthetase [Brachyspira pilosicoli 95/1000] gi|300689107|gb|ADK31778.1| putative 2-methylthioadenine synthetase [Brachyspira pilosicoli 95/1000] Length = 440 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 135/462 (29%), Positives = 218/462 (47%), Gaps = 43/462 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSF 83 Q ++ S GC+ N D + + GY+ V+ +DAD+IV+NTC I + E + + Sbjct: 2 QNIYLHSLGCEKNTVDGEHILAILNKNGYKIVDKAEDADVIVINTCAFIEDSKKESIDAI 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 K + K ++V+GC+++ E + V+ +G ++ +E+ Sbjct: 62 FDHSLYKKYGKCKR-----LIVSGCMSERYKENFMEMFQEVDSAIGIHDLEKILTAVEKD 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 F +T Y ++ F+R+ N +A++ I +GC C+FC +P RG Sbjct: 117 GFHDAEENTTY--KEYFDRI-------NTSTNYSAYIRISDGCHANCSFCAIPSIRGKHR 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 SR + +V EAR+ NG EI L+ + G D +K DLL LS I G+ Sbjct: 168 SRKIEDIVKEAREYAKNGAKEINLIAHETTYY---GYDIYKKLALPDLLKELSVIDGIEW 224 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDR 321 +R +P ++ +I A + ++PY +P+Q ILK MNR + Y Y+ +I+ Sbjct: 225 IRVLYQNPVVLNKSIIDAMFKTEKVVPYFDIPLQHIDKDILKDMNRGNRGYSFYKDMINY 284 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IRS + I + IVGFPGET + F+ + V K+ + F YS T +L Sbjct: 285 IRSYDENAVIRTSLIVGFPGETVESFKKLVSFVKKMKLDRVGVFTYSEEENTDA--LLIN 342 Query: 382 VDENVKAERLLCLQKKLR------EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 + K ++L+ K +R E+++S +G+ I+VLIEK KE+ K +GRS + Sbjct: 343 KKKISKNKKLMLRDKLMRIALEVSEERLS---RFIGKSIDVLIEK--KEEDKFIGRSKYD 397 Query: 436 QSVV----------LNSKNHNIGDIIKVRITDVKISTLYGEL 467 V N N NIGDI+KV+I L G L Sbjct: 398 APEVDGFVEVYFDKKNVDNINIGDIVKVKIVHNTEYDLVGNL 439 >gi|86136887|ref|ZP_01055465.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. MED193] gi|85826211|gb|EAQ46408.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. MED193] Length = 418 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 121/399 (30%), Positives = 194/399 (48%), Gaps = 37/399 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ + G E DL+V+NTC + +A K + R+R Sbjct: 8 TLGCRLNAYETEAMKELSQAAGLE--------DLVVVNTCAVTAEAVRKSRQEIRRLR-- 57 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144 ++ +VV GC AQ E E + V+ V+G P+T+ + A Sbjct: 58 -----RDNPQARIVVTGCAAQTEPETFAQMEE-VDTVLGNTEKMQPETWNGMA-----AN 106 Query: 145 F----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 F K VD SV + L +DG R R A++ +Q GCD CTFC++PY RG Sbjct: 107 FIGETEKVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRG 161 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S VVD+ ++L+D G E+ L G ++ +W G L ++ L + L Sbjct: 162 NSRSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPTTPKLGDLVMRILKLVPDL 220 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ ++ + L++A LMP+LHL +Q G D ILK M RRH + + + Sbjct: 221 PRLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMARRHLREDAIRFTE 280 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +RP++ +D I GFP ET+ F ++ LV+ F YS R GTP + + + Sbjct: 281 EALKLRPEMTFGADIIAGFPTETEAHFENSLKLVEDCQLTWLHVFPYSKRDGTPAAKIPK 340 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 QV+ N+ R L+ + S A +G+ +VL+E Sbjct: 341 QVNGNIIKSRAARLRAAGEARVQSHLAAQIGKTHQVLME 379 >gi|299769699|ref|YP_003731725.1| ribosomal protein S12 methylthiotransferase [Acinetobacter sp. DR1] gi|298699787|gb|ADI90352.1| ribosomal protein S12 methylthiotransferase [Acinetobacter sp. DR1] Length = 447 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 135/467 (28%), Positives = 220/467 (47%), Gaps = 50/467 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GY+ + D ADL+V+NTC E A ++ Sbjct: 4 PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + +N R V+V GC+ + E ++I + P V V G Y + E + Sbjct: 63 IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + F L + + G A+L I EGC+ CTFC++P RG + Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V++EA L GV EI ++ Q+ +A W G+ + K F D+ Sbjct: 165 SRPVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 221 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +L ++ VRL Y +P + + A G + +PYL +P Q S R+LK M R + Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGKI---LPYLDIPFQHASPRVLKLMKRPAHS 278 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I R PD+ I S F+VGFPGET++DF+ +D + + + F YSP G Sbjct: 279 ENTLEKIKLWREKCPDLVIRSTFVVGFPGETEEDFQILLDWLVEAQLDRVGCFTYSPVEG 338 Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 +++ + V E +K ER + +Q+++ ++ +GQ + VL++ E V Sbjct: 339 ATANDLPDHVPEEIKQERYERFMQVQQQISAAKLQKR---IGQTMTVLVDGLEDEYPVAV 395 Query: 430 GRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 RS P + V ++ GDI++V ITD L+ +L+ Sbjct: 396 ARSYADAPEIDGNVFVEDIDKSTIQPGDILEVEITDADEYDLFAKLI 442 >gi|297538125|ref|YP_003673894.1| MiaB-like tRNA modifying enzyme YliG [Methylotenera sp. 301] gi|297257472|gb|ADI29317.1| MiaB-like tRNA modifying enzyme YliG [Methylotenera sp. 301] Length = 445 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 79/468 (16%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC D+ R+ ++GYE S +DADL+V+NTC + A E+ Sbjct: 6 PKVGFV-SLGCPKAGSDAERILTQLRAEGYEISGSYEDADLVVVNTCGFIDSAVEESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT--------YYR 135 +G KN + V+V GC+ +G + P V V GP + Sbjct: 65 IGEAI-AKNGK--------VIVTGCLGAKKGV-VEAAHPSVLAVTGPHALEEVMTAVHAN 114 Query: 136 LPELLER-----ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 LP+L E G R+ + Y A+L I EGC+ C Sbjct: 115 LPKLHEPFIDLVPPQGIRLTPSHY-----------------------AYLKISEGCNHRC 151 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKG 239 +FC++P RG +SR + +V++EA L+ GV EI ++ Q+ +A W G+ Sbjct: 152 SFCIIPSMRGDLVSRPIGEVLNEAENLVKAGVSEILVISQDTSAYGVDVKYRPGFWNGRP 211 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 + K ++L SLS++ RL Y +P D +I D +++PYL +P Q S Sbjct: 212 V---KTRMTELCQSLSDLGVWTRLHYVYPYPH--VDEVIPLMAD-GLILPYLDVPFQHAS 265 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 RILK+M R A I R + PDI + S FI GFPGET+DDF+ +D +++ Sbjct: 266 PRILKAMKRPAHAENNLARIKAWREICPDITVRSTFIAGFPGETEDDFQMLLDFLEEAQL 325 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEV 416 + F YS G + + +QV E VK ERL + +Q+++ ++ +G I V Sbjct: 326 DRVGCFAYSAVDGAKANELPDQVPEEVKQERLSRFMEVQERISAAKLHNK---IGSIQTV 382 Query: 417 LI-------EKHGKEKGKLVGRSPWLQSVVL--NSKNHNIGDIIKVRI 455 L+ E + + G+ +P + VV ++ GD ++V I Sbjct: 383 LVDEIVQDSEGNIEAIGRTKADAPEIDGVVYMEDADGLTPGDFVEVEI 430 >gi|308233982|ref|ZP_07664719.1| RNA modification enzyme, MiaB family protein [Atopobium vaginae DSM 15829] gi|328944009|ref|ZP_08241474.1| MiaB family RNA modification enzyme [Atopobium vaginae DSM 15829] gi|327491978|gb|EGF23752.1| MiaB family RNA modification enzyme [Atopobium vaginae DSM 15829] Length = 421 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 127/410 (30%), Positives = 204/410 (49%), Gaps = 41/410 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP+ F+ + GC++N ++ + G + VN ++AD IV+NTC + +A K Sbjct: 3 VPKVAFI-NLGCRVNRVETDVIASELERAGCKVVNQ-NEADAIVINTCAVTGEAEAKTRK 60 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + R NL N VV GCVA +E+ S I + V L+ER Sbjct: 61 IVRRAANLANVP-------FVVATGCVANLHADEL---SSIADNV-----------LVER 99 Query: 143 --ARFGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 AR +RV+ SV+D + + + G+ +Q+GC+ C+FC+V Sbjct: 100 NKARVCQRVLGEFGCIAGSVDDDGDLVQTPTPTGRMRPGIK----VQDGCNNRCSFCIVW 155 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 RG S S V+ R I +G E+ L G N+ +R + G + DLL + + Sbjct: 156 KARGPARSVSCESVLASVRSSIAHGAREVVLTGINLGDFR-EIYHGSRVRLPDLLQLILD 214 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + R+R ++ P D++D L++ + P+LH+ +QSG + LK M R +TA Y Sbjct: 215 ETPVERVRLSSIEPPDVTDELLRVMAQSQGRIAPFLHICLQSGCEATLKRMRRNYTASSY 274 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 ++ R+ P IA+ +D IVGFPGETDD+F+ + D ++IG+A+ F+YS R GTP Sbjct: 275 AAAVENARAYMPSIALGTDLIVGFPGETDDEFQTSYDFCERIGFAKMHVFRYSKREGTPA 334 Query: 376 SNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 ++ QVD +V A R + L ++R +Q +GQ VL++ G Sbjct: 335 ASAPNQVDPHVMASRSKLMRELASRMRYEQAK---KLIGQTDRVLVQGVG 381 >gi|288573284|ref|ZP_06391641.1| MiaB-like tRNA modifying enzyme YliG [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569025|gb|EFC90582.1| MiaB-like tRNA modifying enzyme YliG [Dethiosulfovibrio peptidovorans DSM 11002] Length = 431 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 118/453 (26%), Positives = 221/453 (48%), Gaps = 36/453 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++ + GC N DS + F + + V+ +++ D+ ++NTC + A E+ + Sbjct: 2 KKIYILTLGCPKNSVDSEVLAGRFEPENWTLVDRVEECDIAIVNTCGFIQPAVEESIDVI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ER 142 + +K E + V GC+ GE++ + P V++ + + L L + Sbjct: 62 LDLEEMKAQGTLEK----ICVVGCLVNRYGEDLKKEFPSVDLWAEAEDWDSLSRALGIDS 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G+R+ + + + R +L + EGCD C+FC +P RG Sbjct: 118 PRRGRRI---------------LTESPWTR------YLKVGEGCDTRCSFCTIPSIRGPL 156 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLV 261 SR +V EA KL + G E+ L+GQ++ + G L ++ + S LL ++ +E+ + Sbjct: 157 RSREPKDIVAEAVKLAEEGAKELCLVGQDLTVY-GSDL-SKRGSLSGLLDAMEAELPEDI 214 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 LR HP + + ++ + ++P+L +P+Q +L+ MNR R++ Sbjct: 215 WLRLFYLHPSRVDEASLERVLNSSRILPWLDIPIQHVDADVLRRMNRPPVEEHIRKLFKA 274 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R + PD A + +VGFPGET+ F++ +D V+ + + + +F + P GTP + M +Q Sbjct: 275 GRRMFPDFAFRTTIMVGFPGETEKAFQSLLDFVEDVAFDRLGAFTFCPEEGTPAALMPDQ 334 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437 + ++ K R L + + ++ VG+ ++VLIE+ +E G GRS P + Sbjct: 335 IPQDEKDRRYAELMELQQGISLARQRGFVGKEMDVLIEEVDEEDGTRWGRSFRDAPEIDG 394 Query: 438 VV--LNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V +K+ GD+++V ITD L+GE V Sbjct: 395 LVSISGAKDDVPGDMVRVSITDASEYDLFGERV 427 >gi|319406389|emb|CBI80030.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 427 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 113/373 (30%), Positives = 188/373 (50%), Gaps = 31/373 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + ++GC++N Y+S + S G +++ D I+ NTC + +A + + + R Sbjct: 5 IMTFGCRLNSYESEIIRKESTSAGLDKLKD----DTIIFNTCAVTAEAVRQAKQAIRKAR 60 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142 +E ++V GC AQ E + V++++G + +Y +LP+ Sbjct: 61 -------RENPHARIIVTGCAAQTEAKNFALMKE-VDLILGNEEKLHADSYRQLPD---- 108 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGI 201 FG D V + E I N G T AF+ +Q GCD CTFCV+PY RG Sbjct: 109 --FGINH-DEKLRVNNIMEVHKIAPHMINALEGRTRAFVQVQNGCDHRCTFCVIPYGRGP 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGL 260 S + ++++ +KL+DNG+ EI L G ++ ++ G L G K T L+ + L + L Sbjct: 166 SRSVPMGIIIEQIKKLVDNGIQEIILTGVDLTSY-GPDLPG-KTTLGKLVSTILHHVPDL 223 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ ++ LI +MP+LHL +Q+G + ILK M RRH + Sbjct: 224 PRLRLSSIDSIEVDQELINLLTYEKRIMPHLHLSLQAGDNMILKRMKRRHLRENAIEFCQ 283 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R+ RP I +D I GFP ET++ F+ +++L+++ G F +SPR GTP + M + Sbjct: 284 SLRAKRPTIVYGADLIAGFPTETEEMFQNSLNLINECGLTHLHVFPFSPRKGTPAARMPQ 343 Query: 381 QVDENVK--AERL 391 + +K AE+L Sbjct: 344 INHKTIKIRAEKL 356 >gi|309358985|emb|CAP33467.2| hypothetical protein CBG_15101 [Caenorhabditis briggsae AF16] Length = 535 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 126/446 (28%), Positives = 220/446 (49%), Gaps = 39/446 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 V Q+ +V+++GC N DS M + GY+ + ++AD+ VLN+C ++ + ++ Sbjct: 45 VGQKVWVRTWGCSHNTSDSEYMAGLLHKAGYDVLKEGENADVWVLNSCTVKTPSEQQA-- 102 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLE 141 NL ++G +++AGCV+QA E + NV +VG + R+ E++E Sbjct: 103 -----NNLVVQGQEQGKK--IIMAGCVSQAAPSEPW----LQNVSIVGVKQIDRIVEVVE 151 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G +V + D L + RK + L+I GC CT+C RG Sbjct: 152 ETLKGNKVRLLTRNRPDALLSLPKM-----RKNELIEVLSISTGCLNNCTYCKTKMARGD 206 Query: 202 EISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--- 257 +S L +V++AR D GV E+ L +++ AW G+ ++ DLL +L ++ Sbjct: 207 LVSYPLEDLVEQARAAFHDEGVKELWLTSEDLGAW-GRDIN---LVLPDLLNALVKVIPD 262 Query: 258 -----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 G+ Y H ++++ L + +LH+PVQS SD +L M R ++ Sbjct: 263 GCMMRLGMTNPPYILDHLEEIAEILNNPK-----VYAFLHIPVQSASDAVLTDMKREYSR 317 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + QI D + P+I I++D I+ FP ET +DF +M+LV K + F +Y PR G Sbjct: 318 RHFEQIADYMIENVPNIYIATDMILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSG 377 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 TP + L+++D V+A + +L F + +G+I VL+ + +K VG + Sbjct: 378 TPAAR-LKKID-TVEARKRTAAMSELFRSYTRFTEDRIGEIHNVLVTEIAADKIHGVGHN 435 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDV 458 + +++ ++ +G+ I+VRIT V Sbjct: 436 KSYEQILVPLEHCKMGEWIEVRITSV 461 >gi|124485405|ref|YP_001030021.1| hypothetical protein Mlab_0580 [Methanocorpusculum labreanum Z] gi|124362946|gb|ABN06754.1| MiaB-like tRNA modifying enzyme [Methanocorpusculum labreanum Z] Length = 416 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 123/447 (27%), Positives = 213/447 (47%), Gaps = 52/447 (11%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + ++YGC N D+ ++ ++ +QG +S ++AD I++NTC + +K + +Y Sbjct: 17 LYTETYGCTYNAGDTEKLMEIARNQGCVPASSAEEADAILINTCVVIDKTEQHMYE---- 72 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 R+ L+ V GC+ + + R P ++++ P L+ Sbjct: 73 -------RLDLYAGKLLFVTGCLPPVAADVLRTRYPKIHIID--------PALIHSCYME 117 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V T + G A L I GC+ CT+C+ RG +S S Sbjct: 118 ---VGTAHV-------------------GTNAVLQIARGCNGHCTYCITRLARGKLVSFS 155 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265 +V +A+ +++ G EI L Q+ ++W GLD + DLL L I G +R Sbjct: 156 AEDIVRQAKSIVEAGATEIQLTAQDTSSW---GLDRNDGLRLPDLLRQLCAIPGNFMIRI 212 Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 ++P + D + A D + + +LH+PVQSGSD +L+ M RR+T+ +Y +I R Sbjct: 213 GMANPDTLLPILDDFLDALKDPKIFL-FLHIPVQSGSDSVLRLMGRRYTSAQYEEICQRA 271 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P+I IS+D+I GF GETD+D + + + + + ++S R TP + M +++ Sbjct: 272 RKAFPEIRISTDYIAGFSGETDEDAAKSAEQIRRTRPGKVNITRFSVRPNTPAAKM-KKI 330 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E +K +R L E + N+A +G I+ ++ + K G + R Q++V+ Sbjct: 331 PEPIKKQRSRELTDAANEVYDANNEALIGHIMTAVVTEVVK-AGSVTARDRTYQNIVI-M 388 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 +N IG I V+IT + L GE +V Sbjct: 389 ENLEIGTEITVKITGHRRHYLIGERIV 415 >gi|320333384|ref|YP_004170095.1| 30S ribosomal protein S12 methylthiotransferase rimO [Deinococcus maricopensis DSM 21211] gi|319754673|gb|ADV66430.1| Ribosomal protein S12 methylthiotransferase rimO [Deinococcus maricopensis DSM 21211] Length = 477 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 129/459 (28%), Positives = 218/459 (47%), Gaps = 46/459 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY+ S +DAD +++NTC A E+ + +G + Sbjct: 24 SLGCPKALVDSERILTQLRAEGYQVAGSYEDADTVIVNTCGFITPAVEESLNAIGEALDA 83 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 V+V GC+ + E I+ R P V + G + + + R + ++ Sbjct: 84 TGK---------VIVTGCLGE-RPETIMERHPKVAAITGSEA------VDDVMRHVRELL 127 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D ++ F L G R A++ I EGC+ C+FC++P RG+++SR V Sbjct: 128 PQD---DNPFTSLLPSTGVKLTPRHY-AYVKIAEGCNHTCSFCIIPKLRGLQVSRDAGAV 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVR 262 + EA +LI G E+ ++ Q+ +A+ R GE + DL L E+ VR Sbjct: 184 LYEAFRLIAGGTKELMIISQDTSAYGVDVRYRESEFQGEQVRAHLVDLAQKLGEMGAWVR 243 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 + Y +P + + A G + +PYL +P+Q + +LK M RR A + + I R Sbjct: 244 MHYIYPYPHIENVVRLMAEGKI---LPYLDVPLQHAAPSVLKRM-RRPGAGKQLETIRRW 299 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + P++ I S FIVGFPGET+ DF+ +D ++ + +F YS ++ ++V Sbjct: 300 REICPELTIRSTFIVGFPGETESDFQLLLDFLEDARLDRVGAFTYSEVEEADATHFEDRV 359 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-----KLVGRS----P 433 E VK ERL + + VG++++V+I++ ++G KL+GR+ P Sbjct: 360 PEAVKQERLARFMEVAQRISAEKLQEKVGRVMDVIIDEFNDDEGDAPGTKLIGRTKGDAP 419 Query: 434 WLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGEL 467 + V + IGDI++ I D LYGE+ Sbjct: 420 GIDGQVYLYAGDLAGQVKIGDIVEAIIEDADEYDLYGEV 458 >gi|254515177|ref|ZP_05127238.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [gamma proteobacterium NOR5-3] gi|219677420|gb|EED33785.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [gamma proteobacterium NOR5-3] Length = 461 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 133/418 (31%), Positives = 195/418 (46%), Gaps = 45/418 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ GY+ V + DDA+L+V+NTC + A E+ +G Sbjct: 33 SLGCPKALVDSERILSQLKLDGYDIVGTYDDAELVVVNTCGFIDSAKEESLQAIGEA--- 89 Query: 91 KNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFGK 147 I E G V+V GC+ + A+ E I P V V GP Y + + Sbjct: 90 ----ISENG--RVIVTGCMGKGADAERIRSEHPKVLSVTGPAAYEEVVAAVHEYVPAPPP 143 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 R V TD + RL+ A+L I EGC+ C+FC++P RG +SR + Sbjct: 144 RDVFTDL-IPTSAVRLTPRH---------YAYLKISEGCNHRCSFCIIPSMRGDLVSRPI 193 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSE 256 V+DEA L+ +GV E+ ++ Q+ +A W+G+ L L +L E Sbjct: 194 GDVMDEAEALVRSGVRELLVISQDTSAYGVDLKYRTGFWQGRPL---STRMESLCAALGE 250 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + VRL Y +P + A G + +PYL +P Q S +LK M R + Sbjct: 251 LGVWVRLHYVYPYPHVDKVIPLMAEGKI---LPYLDIPFQHASHAVLKRMKRPAATEKVL 307 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 I R++ PDI + S FIVGFPGETD +F ++ +D+ + F+YSP G + Sbjct: 308 NRISNWRALCPDITLRSTFIVGFPGETDAEFEELLNFLDEAQLDRVGCFQYSPVTGAAAN 367 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS 432 + V + +K ER LR+Q +S A VG+ IEVLI+ E VGRS Sbjct: 368 ELEGHVPDELKQERYERFM--LRQQAISAKRLQARVGREIEVLIDTVDHEGA--VGRS 421 >gi|134295817|ref|YP_001119552.1| ribosomal protein S12 methylthiotransferase [Burkholderia vietnamiensis G4] gi|238065312|sp|A4JEL4|RIMO_BURVG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|134138974|gb|ABO54717.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia vietnamiensis G4] Length = 453 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 134/477 (28%), Positives = 218/477 (45%), Gaps = 61/477 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 5 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ + A G ++ P V V GP + + Sbjct: 64 IGEA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQA 114 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + K D F L + G A+L I EGC+ CTFC++P R Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K + Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221 Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298 DL+ +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + + + + R + PD+ I S FI GFPGET+ F +D + + Sbjct: 277 HPDVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAE 336 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YSP G + + + ++V+ ER + E VG+ ++VLI Sbjct: 337 LDRVGCFAYSPVEGATANELDGALPDDVREERRARFMEVAEEVSARRMQRKVGKTLKVLI 396 Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ G E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 397 DEVGNEGGIGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453 >gi|254373812|ref|ZP_04989295.1| hypothetical protein FTDG_01596 [Francisella novicida GA99-3548] gi|151571533|gb|EDN37187.1| hypothetical protein FTDG_01596 [Francisella novicida GA99-3548] Length = 439 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 129/457 (28%), Positives = 215/457 (47%), Gaps = 52/457 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC N+ DS R+ ++GY+ V+S D+AD++++NTC A ++ Sbjct: 4 IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLD 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G I E G +LV GC+ + + I + P V + GPQ Y L +E Sbjct: 63 VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + D+ + + + Y ++L I EGC+ CTFC++P RG Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 SRS+ ++ EA KL + GV E+ ++ Q+ +A W K + DL Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEY---QSNILDLA 219 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L ++ RL Y +P + A G + +PYL +P+Q S +LK M R Sbjct: 220 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVPLQHSSPEVLKRMKRPAH 276 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I++ R + PDI I S FIVGFPGET+ DF +D +K + FKYS Sbjct: 277 TQKTLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVE 336 Query: 372 GTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 G + + E +K +RL + LQ ++ ++ VG +V+I+ K++ Sbjct: 337 GAKANQFDNLISEEIKQQRLDEFMGLQAQISADKLQ---RFVGTEQQVIIDVINKDENYA 393 Query: 429 VGRSPW------LQSVVLNS--KNHNIGDIIKVRITD 457 +GR+ + Q ++ ++ +N +G+ V IT+ Sbjct: 394 IGRTKYDAPEVDGQVIIGDALERNLKVGEFATVEITE 430 >gi|15606200|ref|NP_213577.1| hypothetical protein aq_849 [Aquifex aeolicus VF5] gi|6226402|sp|O67016|RIMO_AQUAE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|2983397|gb|AAC06982.1| hypothetical protein aq_849 [Aquifex aeolicus VF5] Length = 432 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 129/450 (28%), Positives = 222/450 (49%), Gaps = 49/450 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRI 87 V S GC N+ DS + G E + ++AD+I++NTC E A E + + L Sbjct: 5 VVSLGCAKNLVDSEILLGKLKGAGVELTPNPEEADVIIVNTCGFIEPAKLESIETILEFA 64 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ERARF 145 + K V+V GC+ + EE+ + P V G +++ + L + + Sbjct: 65 ESGKE----------VIVMGCLVERYKEELEKEIPEVKAYFGTESWNEILNYLGLKEKKE 114 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 KR++ T S A+L I EGC++ C+FC +P RG SR Sbjct: 115 IKRILSTPRSY---------------------AYLKIAEGCNRLCSFCAIPKIRGRHRSR 153 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + ++VDEA+ L D GV EI ++ Q+ + GK L E +LL L +++G+ +R Sbjct: 154 KIEEIVDEAKFLADQGVKEICVVSQD-TTYYGKDLYKE-YKLVELLEGLEKVEGIKWIRL 211 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P ++ + LI + + ++PY +P+Q SDR+LK M R + R +I+ IR Sbjct: 212 LYLYPTEVHEDLIDYVANSEKVLPYFDVPLQHVSDRVLKDMRRGYDGKFVRNLIENIRKK 271 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT---PGSNMLEQV 382 + + FIVGFP E+++DF+ V++ + F YSP GT P + + + Sbjct: 272 IENAVFRTTFIVGFPTESEEDFKELKKFVEEGHFHWLGVFTYSPEEGTHAYPLGDPIPRE 331 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQS 437 + + E L+ +Q+ + ++ N+ +G+ IEVLI+ + +E KG+ ++P + Sbjct: 332 VKEERREELMAIQRGITRKK---NEEFLGKEIEVLIDGYEEEFSFVPKGRAYFQAPEVDG 388 Query: 438 VVL--NSKNHNIGDIIKVRITDVKISTLYG 465 VV +S++ GDI+KV++T V L G Sbjct: 389 VVYVESSRDLKSGDILKVKVTQVADYDLAG 418 >gi|293609257|ref|ZP_06691559.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827709|gb|EFF86072.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 452 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 135/467 (28%), Positives = 220/467 (47%), Gaps = 50/467 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GY+ + D ADL+V+NTC E A ++ Sbjct: 9 PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 67 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + +N R V+V GC+ + E ++I + P V V G Y + E + Sbjct: 68 IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + F L + + G A+L I EGC+ CTFC++P RG + Sbjct: 118 VPAP-------PKHNPFVDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 169 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V++EA L GV EI ++ Q+ +A W G+ + K F D+ Sbjct: 170 SRPVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 226 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +L ++ VRL Y +P + + A G + +PYL +P Q S RILK M R + Sbjct: 227 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGKI---LPYLDIPFQHASPRILKLMKRPAHS 283 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I R PD+ I S F+VGFPGET++DF+ +D + + + F YSP G Sbjct: 284 ENTLEKIKLWREKCPDLVIRSTFVVGFPGETEEDFQILLDWLVEAELDRVGCFTYSPVEG 343 Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 +++ + V E +K ER + +Q+++ ++ +GQ + VL++ E V Sbjct: 344 ATANDLPDHVPEEIKQERYERFMQVQQQISAAKLQKR---IGQTMTVLVDSLEDEYPVAV 400 Query: 430 GRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 RS P + V ++ GD+++V ITD L+ +L+ Sbjct: 401 ARSYADAPEIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 447 >gi|171186225|ref|YP_001795144.1| RNA modification protein [Thermoproteus neutrophilus V24Sta] gi|170935437|gb|ACB40698.1| RNA modification enzyme, MiaB family [Thermoproteus neutrophilus V24Sta] Length = 415 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 141/458 (30%), Positives = 217/458 (47%), Gaps = 61/458 (13%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + +V++YGC + D+ E + G ER +S ++ADL+++ TC +RE G Sbjct: 3 KIYVETYGCWLAKADA---EVVRQRLGLERADSPEEADLVLVYTCAVRED---------G 50 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +R L R G +VVAGC+A+ LR + + G + Y P +E R Sbjct: 51 EVRQLARIRELAGLGRRMVVAGCLAR------LRPYTVKSAAPGAELLY--PSQVEGGR- 101 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG---IE 202 E + RL +GG V +Q GC CTFC YTRG Sbjct: 102 -----------EREMRRLPRYEGG------VVYVAPLQVGCLGNCTFCATKYTRGGAGYV 144 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNV------NAWRGKGLDGEKCTFSDLLYS-LS 255 S S VV R+ + G E+ L GQ+V WRG DLL L Sbjct: 145 RSASPDDVVAHVREAVARGAREVYLTGQDVITYGFDAGWRGG------WNLPDLLERILR 198 Query: 256 EIKGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 E++G R+R S P +D L+ + Y HLPVQSGSDR+L++M RR+T Sbjct: 199 EVEGDYRVRIGMSEPWVFAKFADQLLDVVKRDGRVYRYFHLPVQSGSDRVLRAMGRRYTV 258 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 EYR+++ +IR D I++D IVGFPGE +++F ++ LV+++ + + ++SPR Sbjct: 259 GEYRELVRKIRRELGDAFIATDIIVGFPGEAEEEFVESVKLVEELKFDKVHVARFSPRPF 318 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 T + M QV + K R L + + N VG+ VL+++ + G +VGR+ Sbjct: 319 TEAAVMPRQVPDAEKKRRSKILSEVAARVALLRNGERVGRREVVLVDE--VDHGLVVGRA 376 Query: 433 PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 + VV+ + + +G + VRI LYGE++ Sbjct: 377 SDYRQVVVKRGAGDELMGRFVDVRIAGAGPVYLYGEIL 414 >gi|262376194|ref|ZP_06069424.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter lwoffii SH145] gi|262308795|gb|EEY89928.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter lwoffii SH145] Length = 447 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 135/469 (28%), Positives = 218/469 (46%), Gaps = 54/469 (11%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GY+ + D ADL+V+NTC E A ++ Sbjct: 4 PKVGFV-SLGCPKALVDSERILTQLKTEGYDVASDYDGADLVVVNTCGFIESAVQESLDA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + N R V+V GC+ + E ++I + P V V G Y Sbjct: 63 IGEAMS-ANGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAY---------- 102 Query: 144 RFGKRVVDTDYS-VEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 K V+D + V + + +D G A+L I EGC+ CTFC++P Sbjct: 103 ---KEVMDAVHQYVPEPPKHNPFIDLVPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSM 159 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR + V++EA L GV E+ ++ Q+ +A W G+ + K F Sbjct: 160 RGDLVSRPVGSVLEEAAALKRAGVKEVLVISQDTSAYGLDTKYKLDFWNGQPV---KTKF 216 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 D+ +L ++ VRL Y +P + + A G ++PYL +P Q S +ILK M Sbjct: 217 YDMCEALGQLGIWVRLHYVYPYPHVDAVIDLMAQGK---ILPYLDIPFQHASPKILKLMK 273 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + + + R PD+ + S F+VGFPGET++DF+ +D + + + F Y Sbjct: 274 RPAHSENTLERLKIWREKCPDLVLRSTFVVGFPGETEEDFQMLLDWLKEAQLDRVGCFTY 333 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 SP G +++ + V E +K ER + +E + +GQI+ VL++ E Sbjct: 334 SPVEGATANDLPDHVPEEIKQERYERFMQVQQEISAAKLQKRIGQIMTVLVDDLEDEFPV 393 Query: 428 LVGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 V RS P + V ++ GD+++V ITD LY +L+ Sbjct: 394 AVARSYADAPEIDGNVFVEDIDKSVIKAGDLLEVEITDADEYDLYAKLI 442 >gi|148284718|ref|YP_001248808.1| MiaB-like tRNA modifying enzyme [Orientia tsutsugamushi str. Boryong] gi|146740157|emb|CAM80374.1| MiaB-like tRNA modifying enzyme [Orientia tsutsugamushi str. Boryong] Length = 423 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 118/440 (26%), Positives = 216/440 (49%), Gaps = 32/440 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S ++ ++ ++D+ +IV NTC + ++A + + + + Sbjct: 15 VITFGCRLNAYESEIIKQNL------KIANLDN--VIVFNTCTVTQEAERQAKQAIRKAK 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +E ++ ++V GC AQ ++ + P VN ++G + PE + + Sbjct: 67 -------RENPNIKIIVTGCAAQ-NNPDLFNQMPQVNKILGNEEKL-YPEFYQFDENKIQ 117 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V D E +S DG AF+ +Q GC+ CTFC++PY RG S + Sbjct: 118 VNDIMSIQETATHMISNFDGK------TRAFIQVQNGCNHRCTFCIIPYVRGNSRSVPIG 171 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 + + + LI+ G EI G ++ ++ G L G + L + L RLR ++ Sbjct: 172 VITQQIQLLINQGYKEIVFTGVDLTSY-GADLPGSPTLAQMIKRVLMLVPALPRLRLSSI 230 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++ L K D LMP+ H+ +Q+G + ILK M RRHT + + +++R + PD Sbjct: 231 DIAEIDQELFKLMTDEPRLMPHFHISLQAGDNMILKRMKRRHTREQIIEFCNKMRKILPD 290 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + +D I GFP ET+ F +++L+ + G F YS R TP S M QV ++++ Sbjct: 291 ASFGADMIAGFPTETEIMFNNSLNLISETGIQYLHVFPYSERENTPASKM-PQVQKHIRK 349 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 +R L+ + ++Q F +G+I++VL+EK + G S + ++ IG Sbjct: 350 KRAQLLRNEGKKQLQLFFQQQIGKIVKVLVEK------EQFGHSENFIPTYIATR-QTIG 402 Query: 449 DIIKVRITDVKISTLYGELV 468 +I+ V++T + + G +V Sbjct: 403 EIVNVKLTGIDNDHMTGTVV 422 >gi|209885320|ref|YP_002289177.1| hypothetical protein OCAR_6198 [Oligotropha carboxidovorans OM5] gi|238066423|sp|B6JF93|RIMO_OLICO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|209873516|gb|ACI93312.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5] Length = 440 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 133/469 (28%), Positives = 222/469 (47%), Gaps = 49/469 (10%) Query: 18 VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 ++Q + P+ FV S GC + DS R+ ++GYE D AD+++++TC + A Sbjct: 1 MNQGVPPKISFV-SLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVSTCGFLDSAK 59 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 ++ +G + E G V+V GC+ AE E+I + P + + GPQ Y + Sbjct: 60 QESLGAIGEA-------MAENGK--VIVTGCMG-AEPEQIEKEYPNLLSITGPQQYESVL 109 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 + + RA D + G A+L I EGC+ CTFC++P Sbjct: 110 DAVHRALPPLHNPHLDL----------LPPQGIKLTPRHYAYLKISEGCNNRCTFCIIPK 159 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246 RG +SR V+ EA KL+ GV E+ ++ Q+ +A W+ + + + Sbjct: 160 LRGDLVSRPADDVLREAEKLVVAGVKELLVVSQDTSAYGIDIKYAPSAWKDREV---RAR 216 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F DL L E+ VRL+Y +P + D + G++ +PYL +P Q + +LK M Sbjct: 217 FVDLARELGELGAWVRLQYVYPYPH-VDDVIPLMGGNI---LPYLDIPFQHANTEVLKRM 272 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + I + R PD+ + S FIVGFPGET+ +F+ +D +D+ + FK Sbjct: 273 RRPAAQDKTLARIHKWREQCPDLTLRSTFIVGFPGETESEFQDLLDWLDEAQIDRLGCFK 332 Query: 367 YSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 Y P G + + V + +K R L+ Q+K+ Q++ VG +V+I++ G Sbjct: 333 YEPVAGATSNALENPVPDEIKTARWNALMARQQKISAQRLKRK---VGTRQQVIIDEVGP 389 Query: 424 E--KGKLVGRSPWLQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 KG+ +P + SV + S+ +GDI+ V+I L+G + Sbjct: 390 SVAKGRSKADAPQIDGSVYVASRRPLKVGDIVTVKIERADEYDLHGSVA 438 >gi|238066627|sp|A4VKC4|RIMO_PSEU5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO Length = 440 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 137/463 (29%), Positives = 223/463 (48%), Gaps = 58/463 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC DS R+ +GY+ V S +DAD++V+NTC + A + +G Sbjct: 11 SLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAESLDAIGE---- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I E G V+V GC+ E I P V V GPQ Y ++ + Sbjct: 67 ---AIAENGK--VIVTGCMGVDENN-IRGVHPSVLAVTGPQQYEQVVNAVHEV------- 113 Query: 151 DTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 S+E D F L G R A+L I EGC+ C+FC++P RG +SR + Sbjct: 114 -VPPSIEHDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCIIPSMRGKLVSRPVGD 171 Query: 210 VVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIK 258 V+ EA +L+ GV E+ ++ Q+ +A W G+ + K +L L ++ Sbjct: 172 VLSEAERLVKAGVKEVLVISQDTSAYGVDLKYKLDFWNGQPV---KTRMLELCEELGKMG 228 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 VRL Y +P + A G ++PYL +P Q S ++LK+M R A+E + + Sbjct: 229 VWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKAMKR--PAFEDKTL 283 Query: 319 --IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 I + R + P++ I S FIVGFPGET++DF+ +D + + + F+YSP G P Sbjct: 284 ARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVDGAPAE 343 Query: 377 NM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 M LE V + +K +R + Q+ + ++ VG+ ++VLI++ ++ +GRS Sbjct: 344 AMNLEPVPDEIKQDRWDRFMAHQQAISAARLQLK---VGKELDVLIDEVDEDGA--IGRS 398 Query: 433 PWLQS------VVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 W + V ++S+ GD ++VR+T+ L+ E++ Sbjct: 399 -WADAPEIDGMVYVDSEQPLQPGDKVRVRVTNADEYDLWAEVI 440 >gi|171472312|gb|ACB46863.1| MiaB [Pseudomonas stutzeri] gi|327480352|gb|AEA83662.1| putative FeS oxidoreductase [Pseudomonas stutzeri DSM 4166] Length = 440 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 137/463 (29%), Positives = 223/463 (48%), Gaps = 58/463 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC DS R+ +GY+ V S +DAD++V+NTC + A + +G Sbjct: 11 SLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAESLDAIGE---- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I E G V+V GC+ E I P V V GPQ Y ++ + Sbjct: 67 ---AIAENGK--VIVTGCMGVDENN-IRGVHPSVLAVTGPQQYEQVVNAVHEV------- 113 Query: 151 DTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 S+E D F L G R A+L I EGC+ C+FC++P RG +SR + Sbjct: 114 -VPPSIEHDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCIIPSMRGKLVSRPVGD 171 Query: 210 VVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIK 258 V+ EA +L+ GV E+ ++ Q+ +A W G+ + K +L L ++ Sbjct: 172 VLSEAERLVKAGVKEVLVISQDTSAYGVDLKYKLDFWNGQPV---KTRMLELCEELGKMG 228 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 VRL Y +P + A G ++PYL +P Q S ++LK+M R A+E + + Sbjct: 229 VWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKAMKR--PAFEDKTL 283 Query: 319 --IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 I + R + P++ I S FIVGFPGET++DF+ +D + + + F+YSP G P Sbjct: 284 ARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVDGAPAE 343 Query: 377 NM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 M LE V + +K +R + Q+ + ++ VG+ ++VLI++ ++ +GRS Sbjct: 344 AMDLEPVPDEIKQDRWDRFMAHQQAISAARLQLK---VGKELDVLIDEVDEDGA--IGRS 398 Query: 433 PWLQS------VVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 W + V ++S+ GD ++VR+T+ L+ E++ Sbjct: 399 -WADAPEIDGMVYVDSEQPLQPGDKVRVRVTNADEYDLWAEVI 440 >gi|302187178|ref|ZP_07263851.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. syringae 642] Length = 447 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 145/474 (30%), Positives = 235/474 (49%), Gaps = 65/474 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 10 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ + I P V V GPQ Y Sbjct: 69 IGE-------AIKENGK--VIVTGCMG-VDASVIRNVHPSVLSVTGPQQY---------- 108 Query: 144 RFGKRVVDTDYSV-EDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V + + ++D G A+L I EGC+ C+FC++P Sbjct: 109 ---EQVVNAVHDVVPPRHDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250 RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A +R DG+ K ++L Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 225 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L + VRL Y +P + A G ++PYL +P Q S +ILK M R Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280 Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 A+E + + RI++ R PD+ I S FIVGFPGET++DF+ +D + + + F+Y Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339 Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 SP G P +N+L+ V ++VK +R + Q+ + ++ +G+ IEVLI++ Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394 Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++G VGR +P + V + GD I R+TD L+ E++ Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEML 447 >gi|114800325|ref|YP_762198.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Hyphomonas neptunium ATCC 15444] gi|114740499|gb|ABI78624.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Hyphomonas neptunium ATCC 15444] Length = 425 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 129/436 (29%), Positives = 200/436 (45%), Gaps = 33/436 (7%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P V + GC++N Y+S M + G D +++NTC + +A Sbjct: 7 PSSPTVITLGCRLNTYESEVMRRHAHAAGL--------GDAVIINTCAVTSEAVRGARQA 58 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 ++ ++V GC AQ + E P V V+G + Sbjct: 59 -------IRRAARDNPGAPILVTGCAAQTD-PEAFAAMPEVTRVIGNHDKMKAETWKPAD 110 Query: 144 RFG---KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G K V+ SV + L +DG R R A++ +Q GCD CTFC++PY RG Sbjct: 111 LLGGEEKIRVNDIMSVRETAAHL--IDGMEGRAR---AYVQVQNGCDHRCTFCIIPYGRG 165 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S +VV + R L +G E+ L G ++ +W G L G + + L + L Sbjct: 166 NSRSVPAGEVVAQVRALAASGHYEVVLTGVDLTSW-GADLPGTPELGNLVQRILKLVPEL 224 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 LR ++ +M D LI+A D V PYLHL +Q G + ILK M RRH+ + Q+ + Sbjct: 225 RALRISSIDAIEMDDALIEALADPRV-APYLHLSLQHGDNLILKRMKRRHSRDQAIQLTE 283 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R++RPDIA+ +D I GFP ET+ F ++ L+D+ G + +F YSPR GTP + M Sbjct: 284 RLRAMRPDIALGADIIAGFPTETEAHFENSLRLIDECGLSFLHAFPYSPRPGTPAAKM-P 342 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 Q+ + + +R L+ + + +GQ+ LIE+ R P V L Sbjct: 343 QLAKPLIKDRAARLRAAGEAALLRHFERHLGQVRLALIER------DTAARLPDFTQVKL 396 Query: 441 NSKNHNIGDIIKVRIT 456 + G + V+IT Sbjct: 397 SRAAGEGGRMTPVQIT 412 >gi|209964034|ref|YP_002296949.1| hypothetical protein RC1_0705 [Rhodospirillum centenum SW] gi|238066578|sp|B6IRQ0|RIMO_RHOCS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|209957500|gb|ACI98136.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 448 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 138/450 (30%), Positives = 215/450 (47%), Gaps = 61/450 (13%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ S+GYE S D AD++++NTC + A + +G Sbjct: 22 SLGCPKALVDSERILTKLRSEGYEISGSYDGADVVLVNTCGFLDSAKTESLDAIGEA--- 78 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 IKE G V+V GC+ + + E I P V V GP Y ++ V Sbjct: 79 ----IKENGR--VIVTGCLGK-DAELIRETHPQVLAVTGPHQYEQV---------VAAVH 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D D + L G R A+L I EGC+ CTFC++P RG +SR + V Sbjct: 123 DVVPPRHDPYLDLVPPQGLRLTPRHY-AYLKISEGCNNRCTFCIIPSIRGDLVSRPANLV 181 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259 + EA KL+ GV E+ ++ Q+ +A+ G+D + + F DL L ++ Sbjct: 182 LAEAEKLVKAGVKELLVVSQDTSAY---GVDLKYAESRHRNRPVRARFLDLCQELGQLGA 238 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G + +PYL +P Q S R+LK+M R ++ +I+ Sbjct: 239 WVRLHYVYPYPHVDEVIPLMAEGKV---LPYLDIPFQHASPRVLKAMRR---PADHERIL 292 Query: 320 DRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +RI+ R PD+ + S FIVGFPGET++DF+ +D + + + F+Y P G + Sbjct: 293 ERIKGWRAGCPDLTLRSTFIVGFPGETEEDFQFLLDWLTEAQIDRLGCFQYEPVTGAKAN 352 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFND----ACVGQIIEVLIEKHGKEKGKLVGRS 432 + V + VK ER +L + Q + +D A +G+ IEVLI++ ++ GRS Sbjct: 353 GIPGAVPDEVKEERW----HRLMQHQQAISDARMQARIGRSIEVLIDEVDEDGA--TGRS 406 Query: 433 PWLQS------VVLNSKNH-NIGDIIKVRI 455 W + V LN + GD++K + Sbjct: 407 -WADAPEIDGNVFLNGETDLKQGDLVKATV 435 >gi|262279364|ref|ZP_06057149.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262259715|gb|EEY78448.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 447 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 134/464 (28%), Positives = 216/464 (46%), Gaps = 44/464 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GY+ + D ADL+V+NTC E A ++ Sbjct: 4 PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + +N R V+V GC+ + E ++I + P V V G Y + E + Sbjct: 63 IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + F L + + G A+L I EGC+ CTFC++P RG + Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V++EA L GV EI ++ Q+ +A W G+ + K F D+ Sbjct: 165 SRPVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 221 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +L ++ VRL Y +P + + A G + +PYL +P Q S RILK M R + Sbjct: 222 ALGQMGIWVRLHYVYPYPHVDAVIDLMAQGKI---LPYLDIPFQHASPRILKLMKRPAHS 278 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I R PD+ I S F+VGFPGET++DF+ +D + + + F YSP G Sbjct: 279 ENTLEKIKLWREKCPDLVIRSTFVVGFPGETEEDFQLLLDWLVEAQLDRVGCFTYSPVEG 338 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 +++ + V E +K ER + ++ + +GQ + VL++ E V RS Sbjct: 339 ATANDLPDHVPEEIKQERYERFMQVQQQISAARLQKRIGQTMTVLVDSLEDEYPVAVARS 398 Query: 433 ----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 P + V ++ GD+++V ITD L+ +L+ Sbjct: 399 YADAPEIDGNVFVEDIDKNTIQPGDMLEVEITDADEYDLFAKLI 442 >gi|146282114|ref|YP_001172267.1| putative FeS oxidoreductase [Pseudomonas stutzeri A1501] gi|145570319|gb|ABP79425.1| putative FeS oxidoreductase [Pseudomonas stutzeri A1501] Length = 460 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 134/460 (29%), Positives = 220/460 (47%), Gaps = 52/460 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC DS R+ +GY+ V S +DAD++V+NTC + A + +G Sbjct: 31 SLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAESLDAIGE---- 86 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I E G V+V GC+ E I P V V GPQ Y ++ + Sbjct: 87 ---AIAENGK--VIVTGCMGVDENN-IRGVHPSVLAVTGPQQYEQVVNAVHEV------- 133 Query: 151 DTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 S+E D F L G R A+L I EGC+ C+FC++P RG +SR + Sbjct: 134 -VPPSIEHDPFVDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCIIPSMRGKLVSRPVGD 191 Query: 210 VVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIK 258 V+ EA +L+ GV E+ ++ Q+ +A W G+ + K +L L ++ Sbjct: 192 VLSEAERLVKAGVKEVLVISQDTSAYGVDLKYKLDFWNGQPV---KTRMLELCEELGKMG 248 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 VRL Y +P + A G ++PYL +P Q S ++LK+M R A+E + + Sbjct: 249 VWVRLHYVYPYPNVDDVIPLMAAGK---ILPYLDIPFQHASPKVLKAMKR--PAFEDKTL 303 Query: 319 --IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 I + R + P++ I S FIVGFPGET++DF+ +D + + + F+YSP G P Sbjct: 304 ARIKKWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVDGAPAE 363 Query: 377 NM-LEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430 M LE V + +K +R + Q+ + ++ VG+ ++VLI++ ++ G+ Sbjct: 364 AMNLEPVPDEIKQDRWDRFMAHQQAISAARLQLK---VGKELDVLIDEVDEDGAIGRSWA 420 Query: 431 RSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +P + +V + GD ++VR+T+ L+ E++ Sbjct: 421 DAPEIDGMVYVDSEQPLQPGDKVRVRVTNADEYDLWAEVI 460 >gi|219848510|ref|YP_002462943.1| MiaB-like tRNA modifying enzyme YliG [Chloroflexus aggregans DSM 9485] gi|219542769|gb|ACL24507.1| MiaB-like tRNA modifying enzyme YliG [Chloroflexus aggregans DSM 9485] Length = 456 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 133/467 (28%), Positives = 226/467 (48%), Gaps = 35/467 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++ + + GC N DS M+ + ++G++ V S D+AD+I++NTC A + LG Sbjct: 2 KYHIVTLGCPKNAVDSEGMDGLLSAEGHQAVTSADEADVIIVNTCSFIAAARAET---LG 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR- 144 ++ L R + G L + AGC+AQ+ E++ V+ VG Q + ++ ++ + Sbjct: 59 VLQALAE-RKRPGQRL--IAAGCMAQSHPAEVMGVQG-VDGTVGTQQWTQIGAVVNQPAQ 114 Query: 145 --FGKRVVDTDYSVE-----DKFERLSIVDGGYNRKRGV----TAFLTIQEGCDKFCTFC 193 V +++ + + +S D + R +A+L I +GC+ C FC Sbjct: 115 PVIPLTVTQPTHTIPLTPTTNGAQPVSYADWRTTQIRRTRHTPSAYLKISDGCNLRCAFC 174 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLY 252 +P +G S+ + V+ EA++L+ GV EI L+ Q++ + R GL D L Sbjct: 175 TIPSFKGDMRSKPVGAVLAEAQELVAQGVREIVLVAQHLTDYGRDLGLRDGLAILLDELC 234 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 ++ +RL Y ++P +S+ LI + YL +P+Q L+ M R Sbjct: 235 QVTPSDIWIRLMY--AYPHGISERLIATMASHPQICHYLDMPLQHAHPATLRRMRRPPDT 292 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 ++I +RS PDIAI S FIVG+PGET +F A ++ + + +F+YS G Sbjct: 293 DRTLRLIAELRSAMPDIAIRSTFIVGYPGETTAEFNALIEFLHTAQLDRVGAFRYSREPG 352 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQV---SFNDACVGQIIEVLIEKHGK-EKGKL 428 TP + + QV +V R + +R QQ+ + N VG+ + VLIE +G + G+ Sbjct: 353 TPAAELPAQVRPHVIERR---WHELMRVQQMISRARNQRWVGRTLTVLIEGNGATDDGQP 409 Query: 429 --VGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 VGRS P + V H IG ++ VR+ L+GE+ V Sbjct: 410 LSVGRSFRDAPEIDGQVFVWGTHPIGSMVSVRVMQATDYDLWGEVAV 456 >gi|300794023|ref|NP_001179620.1| CDK5 regulatory subunit-associated protein 1-like 1 [Bos taurus] gi|297489483|ref|XP_002697591.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1 [Bos taurus] gi|296474090|gb|DAA16205.1| CDK5 regulatory subunit associated protein 1-like 1 [Bos taurus] Length = 578 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 125/456 (27%), Positives = 219/456 (48%), Gaps = 39/456 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 63 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 119 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K +V+AGCV QA+ + + ++G Q R+ E++E Sbjct: 120 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V +D +RL + +D RK + ++I GC CT+C + RG Sbjct: 171 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257 S + ++VD A++ GVCEI L ++ A+ G+ + + LL+ L E+ Sbjct: 230 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIGS---SLPALLWKLVEVIPEGA 285 Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G+ Y H +M+ L + +LH+PVQS SD +L M R + + Sbjct: 286 MLRLGMTNPPYILEHLEEMAKILHHPR-----VYAFLHIPVQSASDTVLMEMKREYCVAD 340 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +++++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ PR GTP Sbjct: 341 FKRVVDFLKDKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 400 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS 432 + M EQV VK +R L + S+N D +GQ +VL+ + + V + Sbjct: 401 AAKM-EQVPAQVKKQRTKELSRIFH----SYNPYDHKIGQRQQVLVTEESFDSKFYVAHN 455 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + V++ +G +++V I + + G+ V Sbjct: 456 RFYEQVLVPKNPTFMGKMVEVDIYESGKHFMKGQPV 491 >gi|260752719|ref|YP_003225612.1| ribosomal protein S12 methylthiotransferase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552082|gb|ACV75028.1| MiaB-like tRNA modifying enzyme YliG [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 443 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 125/451 (27%), Positives = 209/451 (46%), Gaps = 42/451 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ S+GY + D+AD++++NTC + A E+ +G Sbjct: 15 SLGCPKALVDSERILTKLRSEGYNLSSQYDEADVVLVNTCGFIDSAKEESLDAIGEAMA- 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ E + I R P + + G Q Y E++ + Sbjct: 74 ENGR--------VIVTGCLGN-EADRIRERFPDILAITGAQQY---EEVVSAVHDAAPIE 121 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + Y + L + Y+ +L I EGC+ C+FC++P RG +SR + Sbjct: 122 ASPYVDLVPEQGLKLTPRHYS-------YLKISEGCNHRCSFCIIPSLRGDLVSRRADAI 174 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA KL+ G E+ ++GQ+ +A W+ + + K +DL L E+ Sbjct: 175 LREAEKLVAAGTKELLVIGQDSSAYGVDLRHQEYRWKDRMV---KADLTDLARGLGELGA 231 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + + A G +++PYL +P Q S +LK M R + + Sbjct: 232 WVRLHYVYPYPHVDNLIPLMAEG---LILPYLDIPFQHASPSVLKRMKRPANEVKILDRL 288 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + PDIA+ S F+VGF GET+ DF+ +D +D+ + +F++ G + Sbjct: 289 TKWREIVPDIALRSSFVVGFLGETEQDFQYLLDWLDEAQLDRVGAFRFEAVEGAAANAFD 348 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQ 436 V E VK ER L +K + + A +G+ I +I++ G G+ +P + Sbjct: 349 GAVPEEVKNERYQRLMEKAAQISEAKLQAKIGRDIATIIDRTDGEGGASGRSYADAPEID 408 Query: 437 SVV--LNSKNHNIGDIIKVRITDVKISTLYG 465 V ++ N IGDI+ VR+ D L+G Sbjct: 409 GEVHLRDADNLKIGDIVTVRVEDADEHDLFG 439 >gi|241667259|ref|ZP_04754837.1| 2-alkenal reductase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875810|ref|ZP_05248520.1| tRNA-methylthiotransferase miaB [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841831|gb|EET20245.1| tRNA-methylthiotransferase miaB [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 439 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 130/454 (28%), Positives = 217/454 (47%), Gaps = 46/454 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC N+ DS R+ ++GY+ V+S D+AD++++NTC A ++ Sbjct: 4 IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G I E G +LV GC+ + + I + P V + GPQ Y L +E Sbjct: 63 VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + D+ + + + Y ++L I EGC+ CTFC++P RG Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-------RGKGLDGE-KCTFSDLLYSL 254 SRS+ ++ EA KL + GV E+ ++ Q+ +A+ G D E + DL +L Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNDKEYQSNILDLATAL 222 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 ++ RL Y +P + A G + +PYL +P+Q S +LK M R + Sbjct: 223 GDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVPLQHSSPEVLKRMKRPAHTQK 279 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 I++ R + PDI I S FIVGFPGET+ DF +D +K + FKYS G Sbjct: 280 TLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVEGAK 339 Query: 375 GSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 + + E +K +RL + LQ ++ ++ VG +V+I+ K++ +GR Sbjct: 340 ANQFDNLISEEIKQQRLDEFMGLQAQISADKLQ---RFVGIEQQVIIDVINKDENYAIGR 396 Query: 432 SPWL------QSVVLNS--KNHNIGDIIKVRITD 457 + + Q ++ ++ +N +G+ V IT+ Sbjct: 397 TKYDAPEVDGQVIIGDALERNLKVGEFATVEITE 430 >gi|110678170|ref|YP_681177.1| MiaB-like tRNA modifying enzyme [Roseobacter denitrificans OCh 114] gi|109454286|gb|ABG30491.1| MiaB-like tRNA modifying enzyme, hypothetical [Roseobacter denitrificans OCh 114] Length = 417 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 131/446 (29%), Positives = 206/446 (46%), Gaps = 47/446 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ G +D +V+NTC + +A K S + ++R Sbjct: 8 TLGCRLNAYETEAMKELAAEAGL--------SDAVVVNTCAVTGEAVRKARSTIRKLR-- 57 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV- 149 +E ++V GC AQ E + P VN V+G E ++ +G Sbjct: 58 -----RENPTARLIVTGCAAQTE-PQTFAAMPEVNAVIGNT------EKMQGDTWGALAA 105 Query: 150 ----------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 VD SV + L +DG R R A++ +Q GCD CTFC++PY R Sbjct: 106 DFIGESEAVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGR 160 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G S VVD+ ++L+D G E+ L G ++ +W G L + ++ L + Sbjct: 161 GNSRSVPAGVVVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPAQPKLGDLVMRILRLVPD 219 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L RLR ++ ++ + L++A LMP+LHL +Q G D ILK M RRH + + Sbjct: 220 LPRLRISSIDSIEVDENLMQAIATEHRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFA 279 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R +RPD+ +D IVGFP ET+ F ++ LV++ F YS R GTP + M Sbjct: 280 QDARRLRPDMTFGADIIVGFPTETEAMFDNSLALVEECDLTWLHVFPYSARPGTPAARM- 338 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 V + ER L+ Q A VG++ VL+E + GR+ V Sbjct: 339 PAVHGQIIKERASRLRAAGDAQVQRHLSAQVGKVHNVLMESASR------GRTEQFTEVQ 392 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465 +++ G II + IT + L G Sbjct: 393 VSTPRQE-GRIIPLPITGTVGAALQG 417 >gi|91775949|ref|YP_545705.1| hypothetical protein Mfla_1596 [Methylobacillus flagellatus KT] gi|123254378|sp|Q1H0X3|RIMO_METFK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|91709936|gb|ABE49864.1| SSU ribosomal protein S12P methylthiotransferase [Methylobacillus flagellatus KT] Length = 441 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 131/457 (28%), Positives = 213/457 (46%), Gaps = 42/457 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC DS R+ ++GY S DDADL+V+NTC + A E+ Sbjct: 6 PKVGFV-SLGCPKASSDSERILTQLRAEGYAISGSYDDADLVVVNTCGFIDSAVEESLDA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + E G V+V GC+ A+ + + P V V GP + L E++ Sbjct: 65 IGEA-------LAENGK--VIVTGCLG-AKSDVVKAAHPGVLAVTGP---HALEEVMTAV 111 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + Y+ + + + Y A+L I EGC+ C+FC++P RG + Sbjct: 112 HANLPKLHDPYTDLVPPQGIRLTPQHY-------AYLKISEGCNHRCSFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SRS+ V+ EA L++ GV E+ ++ Q+ +A W G+ + K ++L Sbjct: 165 SRSIGDVMTEAENLVNAGVAELLVISQDTSAYGVDVKYRTGFWNGRPV---KTRMTELAR 221 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +L + VR+ Y +P D +I D +++PYL +P+Q S RILK+M R ++ Sbjct: 222 ALGSLGVWVRMHYVYPYPH--VDEIIPLMAD-GLILPYLDVPLQHASPRILKAMKRPASS 278 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 I+ R + PDI I S FIVGFPGETD+DF ++ + + + F YS G Sbjct: 279 ENNLARINAWREICPDITIRSTFIVGFPGETDEDFECLLEFLQEAQLDRVGCFAYSAVDG 338 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430 + + V E +K ERL + +G+I VLI+ ++ G+ Sbjct: 339 AAANALDNPVPEPLKQERLARFMEVQESISAEKQRRKIGRIETVLIDDIDGDQAIGRTAA 398 Query: 431 RSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465 +P + VV S + GD+++ +I + L+ Sbjct: 399 DAPEIDGVVYLSGADGLQPGDLVEAQIVNSDGHDLWA 435 >gi|325122523|gb|ADY82046.1| MiaB-like tRNA modifying enzyme YliG [Acinetobacter calcoaceticus PHEA-2] Length = 447 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 134/467 (28%), Positives = 220/467 (47%), Gaps = 50/467 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GY+ + D ADL+V+NTC E A ++ Sbjct: 4 PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + +N R V+V GC+ + E ++I + P V V G Y + E + Sbjct: 63 IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + F L + + G A+L I EGC+ CTFC++P RG + Sbjct: 113 VPAP-------PKHNPFVDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V++EA L GV EI ++ Q+ +A W G+ + K F D+ Sbjct: 165 SRPVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 221 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +L ++ VRL Y +P + + A G + +PYL +P Q S R+LK M R + Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGKI---LPYLDIPFQHASPRVLKLMKRPAHS 278 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I R PD+ I S F+VGFPGET++DF+ +D + + + F YSP G Sbjct: 279 ENTLEKIKLWREKCPDLVIRSTFVVGFPGETEEDFQILLDWLVEAELDRVGCFTYSPVEG 338 Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 +++ + V E +K ER + +Q+++ ++ +GQ + VL++ E V Sbjct: 339 ATANDLPDHVPEEIKQERYERFMQVQQQISAAKLQKR---IGQTMTVLVDSLEDEYPVAV 395 Query: 430 GRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 RS P + V ++ GD+++V ITD L+ +L+ Sbjct: 396 ARSYADAPEIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 442 >gi|261416265|ref|YP_003249948.1| MiaB-like tRNA modifying enzyme YliG [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372721|gb|ACX75466.1| MiaB-like tRNA modifying enzyme YliG [Fibrobacter succinogenes subsp. succinogenes S85] gi|302328140|gb|ADL27341.1| ribosomal protein S12 methylthiotransferase RimO [Fibrobacter succinogenes subsp. succinogenes S85] Length = 449 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 127/447 (28%), Positives = 217/447 (48%), Gaps = 32/447 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + FV GC N D+ + G+ ++ AD I++NTC E A E+ Sbjct: 19 KVFVVHLGCAKNQVDAENLVGEMLHAGFATCDTAGKADYILVNTCGFIEAAKEE------ 72 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I + + ++V+GC++ GEE+++ P V+ VG Y+ ELL++ Sbjct: 73 SINAILAQAKAKKAKQKLIVSGCLSGRYGEELMKELPEVDYWVGT---YKPGELLKKMG- 128 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +V + R+++ GG++ A+L I EGC++ C +C +P RG + SR Sbjct: 129 ---IVAPQSCDAENLPRMNL--GGFSHH----AYLKIAEGCNRRCAYCAIPLIRGKQDSR 179 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 S+ +V EA+ L GV EITL+ Q+ + R KG G T +LL +L + + +R Sbjct: 180 SIEDIVAEAKDLEAQGVKEITLIAQDTTYFGREKGKKG--GTLVELLRALLDNTNIPWIR 237 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P + D L+ L+ Y+ +P+Q SD++LK+M R + E ++ +IR Sbjct: 238 MLYWYPMFVDDELLDLMAKEPRLVKYVDMPIQHASDKMLKNMKRNYRKKELVDLLHKIRE 297 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LEQVD 383 P + + S +VGFPGET +DF M+L+ + + F +SP GTP M L VD Sbjct: 298 RIPGVTLRSTVLVGFPGETHEDFEELMELLQDVQFDHLGGFVFSPEEGTPVMEMDLPAVD 357 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQSVVLNS 442 E+ RL + E + + +G+ ++++I++ +E + GR+ NS Sbjct: 358 ESDARARLEAVTDYQEELAAEYAENMIGKTVKIIIDQVAEESEYHFYGRTEG------NS 411 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 ++ DI+KV D + + LVV Sbjct: 412 MEND--DIVKVIEGDGDVGEFHNALVV 436 >gi|307825688|ref|ZP_07655905.1| MiaB-like tRNA modifying enzyme [Methylobacter tundripaludum SV96] gi|307733265|gb|EFO04125.1| MiaB-like tRNA modifying enzyme [Methylobacter tundripaludum SV96] Length = 429 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 117/412 (28%), Positives = 204/412 (49%), Gaps = 26/412 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + +K+ GC++N + F G++ + A LIV+N+C + + AA K + Sbjct: 2 KVHLKTLGCRLNEAELETWAQAFQKSGHQITKQAEAAHLIVINSCAVTQDAARKSRQLIR 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI N + K +VV+GC A +E V+++V + +L E Sbjct: 62 RIHR-DNPQAK------LVVSGCYATLNEDEAASLLG-VDLIVSNKDKDQLVE----KTL 109 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +D+ + + +S+ G R AF+ +Q+GC CTFC+V RG E SR Sbjct: 110 AELNMDSMPVLSTEPGEISLFTRGRQR-----AFVKVQDGCRYRCTFCIVTVARGEENSR 164 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + V+DE L G+ E+ L G ++ + G L SDL+ ++ + RLR Sbjct: 165 PVQAVIDEINALHRQGITEVILTGVHLGGY-GSDLGN---NLSDLIKAILAETDIPRLRL 220 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 + P ++ K D LMP+LHLP+QSGSD +L+ M RR E+ I++++R+ Sbjct: 221 GSLEPWELPGDFFKLF-DNPRLMPHLHLPLQSGSDTVLRRMARRCKTEEFASIVNQLRAQ 279 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ +++D IVGFPGET+ +++ + + + + G+ F YS R GT +++ Q+ + Sbjct: 280 IPNFNVTTDIIVGFPGETEQEWQESFNFIKQTGFGHIHIFTYSSREGTKAASLPGQLSND 339 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK----EKGKLVGRSP 433 +K +R L + E ++ F VG VL E + + +K ++ G +P Sbjct: 340 IKKQRSRQLHELAEEMKLKFFADNVGNQFPVLWEGYSEALADDKQRVFGYTP 391 >gi|126642021|ref|YP_001085005.1| hypothetical protein A1S_1976 [Acinetobacter baumannii ATCC 17978] gi|169633328|ref|YP_001707064.1| hypothetical protein ABSDF1679 [Acinetobacter baumannii SDF] gi|184158419|ref|YP_001846758.1| ribosomal protein S12 methylthiotransferase [Acinetobacter baumannii ACICU] gi|239501620|ref|ZP_04660930.1| 2-methylthioadenine synthetase [Acinetobacter baumannii AB900] gi|260551686|ref|ZP_05825760.1| 2-methylthioadenine synthetase [Acinetobacter sp. RUH2624] gi|332873910|ref|ZP_08441850.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter baumannii 6014059] gi|238065268|sp|B2I330|RIMO_ACIBC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065269|sp|B0VMU3|RIMO_ACIBS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065270|sp|A3M659|RIMO_ACIBT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|126387905|gb|ABO12403.1| hypothetical protein A1S_1976 [Acinetobacter baumannii ATCC 17978] gi|169152120|emb|CAP01019.1| conserved hypothetical protein [Acinetobacter baumannii] gi|183210013|gb|ACC57411.1| 2-methylthioadenine synthetase [Acinetobacter baumannii ACICU] gi|260405429|gb|EEW98923.1| 2-methylthioadenine synthetase [Acinetobacter sp. RUH2624] gi|322508743|gb|ADX04197.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2] gi|323518348|gb|ADX92729.1| ribosomal protein S12 methylthiotransferase [Acinetobacter baumannii TCDC-AB0715] gi|332737896|gb|EGJ68783.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter baumannii 6014059] Length = 447 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 134/467 (28%), Positives = 220/467 (47%), Gaps = 50/467 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GY+ + D ADL+V+NTC E A ++ Sbjct: 4 PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + +N R V+V GC+ + E ++I + P V V G Y + E + Sbjct: 63 IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + F L + + G A+L I EGC+ CTFC++P RG + Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V++EA L GV EI ++ Q+ +A W G+ + K F D+ Sbjct: 165 SRPVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 221 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +L ++ VRL Y +P + + A G + +PYL +P Q S R+LK M R + Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGKI---LPYLDIPFQHASPRVLKLMKRPAHS 278 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I R PD+ I S F+VGFPGET++DF+ +D + + + F YSP G Sbjct: 279 ENTLEKIKLWREKCPDLVIRSTFVVGFPGETEEDFQILLDWLVEAQLDRVGCFTYSPVEG 338 Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 +++ + V E +K ER + +Q+++ ++ +GQ + VL++ E V Sbjct: 339 ATANDLPDHVPEEIKQERYERFMQVQQQISAAKLQKR---IGQTMTVLVDSLEDEYPVAV 395 Query: 430 GRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 RS P + V ++ GD+++V ITD L+ +L+ Sbjct: 396 ARSYADAPEIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 442 >gi|83949966|ref|ZP_00958699.1| MiaB-like tRNA modifying enzyme [Roseovarius nubinhibens ISM] gi|83837865|gb|EAP77161.1| MiaB-like tRNA modifying enzyme [Roseovarius nubinhibens ISM] Length = 419 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 128/439 (29%), Positives = 206/439 (46%), Gaps = 50/439 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ G + +V+NTC + +A K + R+R Sbjct: 9 TLGCRLNAYETEAMKELSAEAGL--------SGAVVVNTCAVTAEAVRKARQEIRRLR-- 58 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLP------- 137 +E D ++V GC AQ E E V+ V+G P+T+ L Sbjct: 59 -----REHPDARLIVTGCAAQTEPETFTAMEE-VDAVIGNTEKMQPETWKGLAADFIGET 112 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 E+L+ VD SV + L +DG R R A++ +Q GCD CTFC++PY Sbjct: 113 EMLQ--------VDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPY 159 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG S VVD+ ++L+D G E+ L G ++ +W G L ++ L + Sbjct: 160 GRGNSRSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPATPRLGDLVMRILKLV 218 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 L RLR ++ ++ + L++A LMP+LHL +Q G D ILK M RRH + + Sbjct: 219 PDLPRLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIR 278 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + R +RP++ +D I GFP ET+ F ++ LV+ G F YS R GTP + Sbjct: 279 FAEEARRLRPEMTFGADIIAGFPTETEAHFENSLRLVEDCGLTWLHVFPYSRREGTPAAR 338 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 + QV+ V +R L++ + + VG+ VL+E +GR+ Sbjct: 339 IPNQVNGRVIRDRAARLRQAGEARVATHLAEQVGRAHRVLMEN------PRMGRTEQFTE 392 Query: 438 VVLNSKNHNIGDIIKVRIT 456 V + + G I+ VRI+ Sbjct: 393 VEF-ATDQPEGQIVDVRIS 410 >gi|320329656|gb|EFW85645.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 447 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 146/474 (30%), Positives = 235/474 (49%), Gaps = 65/474 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 10 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ + I P V V GPQ Y Sbjct: 69 IGE-------AIKENGK--VIVTGCMG-VDANVIRDVHPSVLSVTGPQQY---------- 108 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250 RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A +R DG+ K ++L Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 225 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L + VRL Y +P + A G ++PYL +P Q S +ILK M R Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280 Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 A+E + + RI++ R PD+ I S FIVGFPGET++DF+ +D + + + F+Y Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339 Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 SP G P +N+L+ V ++VK +R + Q+ + ++ +G+ IEVLI++ Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394 Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++G VGR +P + V +GD I R+TD L+ E++ Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLEEGSTVQLGDKIMCRVTDADEYDLWAEML 447 >gi|261368034|ref|ZP_05980917.1| RNA modification enzyme, MiaB family [Subdoligranulum variabile DSM 15176] gi|282570022|gb|EFB75557.1| RNA modification enzyme, MiaB family [Subdoligranulum variabile DSM 15176] Length = 446 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 134/451 (29%), Positives = 207/451 (45%), Gaps = 35/451 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89 S GC N D+ +G+ V +AD+I++NTC E A AE + + L Sbjct: 7 SLGCPKNQVDADVFCHALLKEGHTTVADPAEADVIIVNTCGFIESAKAEAIENIL----- 61 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARFG 146 + ++ DL V+V GC+A+ ++I++ P V+ V+G + +P ++ R A G Sbjct: 62 MACQYKQQNPDLKVIVTGCLAERYKQQIVQEIPEVDAVIGIGSNAAIPAIVARVCAAGAG 121 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGI 201 + VE + + GG R ++ A+L I EGC+ C +C +P RG Sbjct: 122 Q--------VESYGPKSDMPLGG---ARVISTPRHYAYLKIAEGCNNRCHYCAIPLIRGP 170 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 SR + V EAR L GV E+ L+ Q+ A+ G D G+ +LL L +I G+ Sbjct: 171 LRSRPIEDCVAEARWLAGEGVRELILVAQDPTAY---GEDWGKPGAVCELLDRLQQIDGI 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++P +SD I A ++PYL LP+Q D +LK+MNRR + I Sbjct: 228 RWIRILYAYPERISDAFIAAMVRNTKVVPYLDLPIQHCDDAVLKAMNRRGGRADIEDAIA 287 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R+ P I + + I GFPGET++ + D V + + + F YS T + M Sbjct: 288 RLRAAIPGITLRTTLIAGFPGETEEQYAELCDFVKTMRFDRLGCFAYSAEENTVAAKMDG 347 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ 436 Q+DE K R + + E VGQ +E + + E G + RS P + Sbjct: 348 QLDEETKQRRADHIMELQAEVSADREKEKVGQTLECICDGVDDETGMYLLRSKADCPEID 407 Query: 437 SVVLNSKNH--NIGDIIKVRITDVKISTLYG 465 VL + G V ITD LYG Sbjct: 408 GNVLTPADTLLETGAFYNVTITDADTYDLYG 438 >gi|330968910|gb|EGH68976.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 447 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 146/474 (30%), Positives = 235/474 (49%), Gaps = 65/474 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 10 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ + I P V V GPQ Y Sbjct: 69 IGE-------AIKENGK--VIVTGCMG-VDASVIRNVHPSVLSVTGPQQY---------- 108 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250 RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A +R DG+ K ++L Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPIKTRMTEL 225 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L + VRL Y +P + A G ++PYL +P Q S +ILK M R Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280 Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 A+E + + RI++ R PD+ I S FIVGFPGET++DF+ +D + + + F+Y Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339 Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 SP G P +N+L+ V ++VK +R + Q+ + ++ +G+ IEVLI++ Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394 Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++G VGR +P + V + GD I R+TD L+ E++ Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLDDGSTVQPGDKIMCRVTDADEYDLWAEML 447 >gi|289674642|ref|ZP_06495532.1| hypothetical protein PsyrpsF_15357 [Pseudomonas syringae pv. syringae FF5] gi|330975344|gb|EGH75410.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 447 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 146/474 (30%), Positives = 235/474 (49%), Gaps = 65/474 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 10 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ + I P V V GPQ Y Sbjct: 69 IGE-------AIKENGK--VIVTGCMG-VDASVIRNVHPSVLSVTGPQQY---------- 108 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250 RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A +R DG+ K ++L Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 225 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L + VRL Y +P + A G ++PYL +P Q S +ILK M R Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280 Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 A+E + + RI++ R PD+ I S FIVGFPGET++DF+ +D + + + F+Y Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339 Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 SP G P +N+L+ V ++VK +R + Q+ + ++ +G+ IEVLI++ Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394 Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++G VGR +P + V + GD I R+TD L+ E++ Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEML 447 >gi|255263244|ref|ZP_05342586.1| conserved hypothetical protein [Thalassiobium sp. R2A62] gi|255105579|gb|EET48253.1| conserved hypothetical protein [Thalassiobium sp. R2A62] Length = 417 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 129/433 (29%), Positives = 209/433 (48%), Gaps = 39/433 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+D+ G E + +V+NTC + +A K + ++R Sbjct: 8 TLGCRLNTYETHAMQDLAQRAGVE--------NAVVVNTCAVTAEAVRKAKQEIRKLR-- 57 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLERA 143 ++ + ++V GC AQ E E + V+VV+G +T+ ++ P+L+ + Sbjct: 58 -----RDHPEAKLIVTGCAAQTE-PETFKNMAEVDVVIGNTEKMQAETWQQMTPDLIGQT 111 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + VD SV L +DG R R A++ +Q GCD CTFC++PY RG Sbjct: 112 EPVQ--VDDIMSVTKTAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSR 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S VVD+ ++L D+G E+ L G ++ +W G L + + +L L + L RL Sbjct: 165 SVPAGVVVDQIKRLRDSGYNEVVLTGVDLTSW-GADLPAQPKLGNLVLRILKLVPDLPRL 223 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ ++ D L++A LMP+LHL +Q G D ILK M RRH + + + R Sbjct: 224 RISSIDSIEVDDALMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFSEDAR 283 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +RP++ +D I GFP ETD F ++ LV+ F YS R+GTP + M V+ Sbjct: 284 KLRPEMTFGADIIAGFPTETDAHFENSLRLVEDCHLTWLHVFPYSARIGTPAAKM-PAVN 342 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 V ER L++ + +A + + VL+E +GR+ V SK Sbjct: 343 GKVIKERAARLREAGAAAVQTHLNAQLDRTHHVLMENPN------MGRTEQFTPVQF-SK 395 Query: 444 NHNIGDIIKVRIT 456 G I+ IT Sbjct: 396 PQVEGSIVTTNIT 408 >gi|332521166|ref|ZP_08397624.1| MiaB-like tRNA modifying enzyme YliG [Lacinutrix algicola 5H-3-7-4] gi|332043259|gb|EGI79456.1| MiaB-like tRNA modifying enzyme YliG [Lacinutrix algicola 5H-3-7-4] Length = 435 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 137/454 (30%), Positives = 229/454 (50%), Gaps = 45/454 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V + GC NVYDS + + G E V+ + +++V+NTC A E+ + + Sbjct: 13 VITLGCSKNVYDSEVLMGQLKANGKEVVHEQE-GNIVVINTCGFINNAKEESVNTI---- 67 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ + KE GD+ V V GC+++ ++ + P V+ G LP LL Sbjct: 68 -LEYMQKKEDGDVDKVFVTGCLSERYKPDLEKEIPNVDQYFGTT---ELPGLL------- 116 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + + DY E ERL+ Y A+L I EGCD+ C+FC +P RG S + Sbjct: 117 KALGADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGKHKSTPI 169 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRLR 264 +V EA KL NGV E+ L+ Q++ + GLD +K ++LL +L +++G+ +RL Sbjct: 170 EDLVTEAEKLAANGVKELILIAQDLTYY---GLDLYKKRNLAELLENLVKVEGIEWIRLH 226 Query: 265 YT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 Y T P D+ D + + + YL +P+Q SD ILKSM R T + +++ Sbjct: 227 YAFPTGFPMDVLDIMKREPK----ICNYLDIPLQHISDNILKSMRRGTTKEKTTKLLKEF 282 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P++ I + I G+PGET+++F+ + V ++ + + F YS T N+ + V Sbjct: 283 RAKVPEMTIRTTLIAGYPGETEENFQELKEWVREMRFERLGCFTYSHEENTHAFNLEDDV 342 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS- 437 E VK +R+ + + + N A +GQ +V+I++ KE VGR SP + + Sbjct: 343 PEEVKMQRVNEIMEIQSQISWELNQAKIGQEFKVVIDR--KEGNYFVGRTEFDSPDVDNE 400 Query: 438 VVLNSKN--HNIGDIIKVRITDVKISTLYGELVV 469 V++++K G+ V+I + + LYGE+V Sbjct: 401 VLIDAKTVYLKTGEYTTVKIIEAEDFDLYGEVVT 434 >gi|326334467|ref|ZP_08200679.1| MiaB family RNA modification enzyme [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693434|gb|EGD35361.1| MiaB family RNA modification enzyme [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 435 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 130/457 (28%), Positives = 219/457 (47%), Gaps = 35/457 (7%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAE 78 + I R V + GC N+YDS + + G E V+ + +++V+NTC I E Sbjct: 4 KSIKQNRINVVTLGCSKNIYDSEVLMGQLKASGKEVVHE-ETGNIVVINTCGFINNAKEE 62 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 + + L I+ + +EG V V GC+++ ++ + P V+ G LP Sbjct: 63 SINTILEYIQ-----KKEEGLVDKVFVMGCLSERYKPDLQKEIPNVDQYFGTT---ELPV 114 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 LL +V+ DY E ERL+ Y A+L + EGCD+ C+FC +P Sbjct: 115 LL-------KVLGADYKHELIGERLTTTPKNY-------AYLKVSEGCDRLCSFCAIPLM 160 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG S + ++ EA KL GV E+ L+ Q++ + G L G++ T ++LL +L++++ Sbjct: 161 RGRHKSTPIEDLIVEAEKLAKKGVKELILIAQDITYY-GLDLYGKR-TLANLLRALAKVE 218 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ +R + P +++ + + YL +P+Q +D ILKSM R T ++ Sbjct: 219 GIEWIRIHYAFPTGFPKDVLEVMKEESKICKYLDIPLQHIADPILKSMKRGTTQARTTRL 278 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + R P+IA+ + IVG+P ET++DF + V ++ + + F YS T + Sbjct: 279 LQDFRKAIPEIALRTTLIVGYPNETEEDFELLKEFVRQMRFERLGCFTYSHEENTAAYEL 338 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW---- 434 + V E VK R + + + N A VG+ LI++ KE VGR+ + Sbjct: 339 EDNVPEEVKQRRAAEIMEIQSQISWELNQAKVGKTFRCLIDR--KEGQYFVGRTEYDSPD 396 Query: 435 -LQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468 V++++ H IGD + IT+ LYGE V Sbjct: 397 VDNEVLIDAAKHYVKIGDFADILITEATDFDLYGEPV 433 >gi|254292968|ref|YP_003058991.1| ribosomal protein S12 methylthiotransferase [Hirschia baltica ATCC 49814] gi|254041499|gb|ACT58294.1| MiaB-like tRNA modifying enzyme YliG [Hirschia baltica ATCC 49814] Length = 450 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 134/470 (28%), Positives = 222/470 (47%), Gaps = 61/470 (12%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 V + + S GC + DS R+ ++GYE A+L+++NTC + A ++ Sbjct: 11 VAPKIGIVSLGCPKALVDSERIITRLRAEGYEISGEYKGANLVLVNTCAFLDSARDESLE 70 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G ++E G V+V GC+ AE E I + V V GP Y Sbjct: 71 AIGEA-------LEENG--RVIVTGCLG-AEPEVIEAQYSNVLAVTGPAQY--------- 111 Query: 143 ARFGKRVVDTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++V+D + + F+ L + + G A+L I EGC C+FC++P Sbjct: 112 ----EQVMDAVHKHCPQPPNAFQSL-VPESGIRLTPRHYAYLKISEGCSNRCSFCIIPSL 166 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG SR + QV+ EA +L GV E+ ++ Q+ +A W+ K + F Sbjct: 167 RGDLASRPIDQVLREAEQLQKAGVNELLVISQDTSAYGMDIKYEPRTWKDKEYE---TRF 223 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 DL L ++ RL Y +P + A G + +PYL +P Q S +L++M Sbjct: 224 LDLCQGLGDMGMWTRLHYVYPYPHVDKVIPLMAEGKI---LPYLDIPFQHASPNVLRNMK 280 Query: 308 RRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 R + ++++RI+ R PDIAI S FIVGFPGETD+DF MD + + +A Sbjct: 281 R---PAKQDKVLERIKQWRIDVPDIAIRSTFIVGFPGETDEDFEMLMDFMREAKIDRAGC 337 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 FKY G ++ V E VK E R + LQ+ + ++ ++A +G++++++I+ Sbjct: 338 FKYEDVKGAVSHDLPNHVPEEVKEERWHRFMQLQQDISHER---SEAQIGRVLDIIIDDS 394 Query: 422 GKEK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467 E G+ +P + +V N + +GDI+K ITD L+ ++ Sbjct: 395 NGEAAVGRTKADAPEIDGLVHLENYPDLEVGDIVKAEITDANCYDLWAKV 444 >gi|147902192|ref|NP_001084956.1| CDK5 regulatory subunit-associated protein 1-like 1 [Xenopus laevis] gi|82185344|sp|Q6NS26|CDKAL_XENLA RecName: Full=CDK5 regulatory subunit-associated protein 1-like 1 gi|47122802|gb|AAH70521.1| MGC78779 protein [Xenopus laevis] Length = 556 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 127/457 (27%), Positives = 221/457 (48%), Gaps = 41/457 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY + ADL +LN+C ++ A + F Sbjct: 60 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEKADLWLLNSCTVKSPAED---HFR 116 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + + K VVV+GCV QA+ + + ++G Q R+ E++E Sbjct: 117 NSIKKAQEANKK------VVVSGCVPQAQPRQDYMKG---LSIIGVQQIDRVVEVVEETI 167 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V +D +RL + +D RK + ++I GC CT+C + RG Sbjct: 168 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGEL 226 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257 S + ++VD A + GVCEI L ++ A+ R G D LL+ L E+ Sbjct: 227 ASYPVEELVDRATQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 281 Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 G+ Y H +M+ L + + +LH+PVQS SD +L M R + Sbjct: 282 AMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMDMKREYCIA 336 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 ++++++D ++ P I I++D I GFPGETD+DF+ T+ LV++ + F ++ PR GT Sbjct: 337 DFKRVVDFLKERVPGITIATDIICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPGT 396 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGR 431 P + M EQV +VK R K+L + S++ D +GQ +VL+ + + V Sbjct: 397 PAAKM-EQVLAHVKKRRT----KELSQLFHSYDPYDHKIGQKQQVLVTEESFDSQYYVAH 451 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + + V++ +G +++V+I + + G+ V Sbjct: 452 NRFYEQVLVPKDPDFMGKMVEVKIFEAGKHFMKGQPV 488 >gi|126741000|ref|ZP_01756683.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. SK209-2-6] gi|126717926|gb|EBA14645.1| MiaB-like tRNA modifying enzyme [Roseobacter sp. SK209-2-6] Length = 420 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 128/448 (28%), Positives = 206/448 (45%), Gaps = 40/448 (8%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P +F + GC++N Y++ M+++ G + +L+V+NTC + +A K Sbjct: 3 PPKF--TTLGCRLNAYETEAMKELSQEAGLD--------NLVVVNTCAVTAEAVRKSRQE 52 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL-- 136 + R+R +E + +VV GC AQ E E + V+ + +T+ ++ Sbjct: 53 IRRLR-------RENPEAQIVVTGCAAQTEPESFAAMGEVDRVIGNNEKMQAETWQQIAK 105 Query: 137 -PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 P+ + K VD SV + L +DG R R A++ +Q GCD CTFC++ Sbjct: 106 GPDFIGETE--KIQVDDIMSVNETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCII 158 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PY RG S V+D+ ++LID G E+ L G ++ +W G L ++ L Sbjct: 159 PYGRGNSRSVPAGVVIDQIKRLIDKGYNEVVLTGVDLTSW-GADLPATPRLGDLVMRILR 217 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + L RLR ++ + + L++A LMP+LHL +Q G D ILK M RRH + Sbjct: 218 LVPDLPRLRISSIDSIEADENLMQAIATEPRLMPHLHLSLQHGDDLILKRMARRHLRDDA 277 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + R +RPD+ +D I GFP ET+ F ++ LV F YS R GTP Sbjct: 278 IAFCEEARRLRPDMTFGADIIAGFPTETEAHFENSLKLVTDCDLTWLHVFPYSKREGTPA 337 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 + + QV+ + ER L+ Q A +G+ +L+E +GR+ Sbjct: 338 AKIPNQVNGKLIKERAARLRAAGEAQTQRHLQAQLGKTHHILMEN------PHMGRTEQF 391 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTL 463 V + G+I+ I+ K S L Sbjct: 392 TEVSFTTPQTE-GEIVMATISGSKGSQL 418 >gi|45361233|ref|NP_989194.1| CDK5 regulatory subunit-associated protein 1-like 1 [Xenopus (Silurana) tropicalis] gi|82186429|sp|Q6P4Y0|CDKAL_XENTR RecName: Full=CDK5 regulatory subunit-associated protein 1-like 1 gi|38649005|gb|AAH63205.1| CDK5 regulatory subunit associated protein 1-like 1 [Xenopus (Silurana) tropicalis] Length = 553 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 219/456 (48%), Gaps = 39/456 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY + ADL +LN+C ++ A + F Sbjct: 60 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEQADLWLLNSCTVKSPAED---HFR 116 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERA 143 I+ + + K VV++GCV QA+ +E ++ I+ V Q R+ E++E Sbjct: 117 NSIKKAQEANKK------VVLSGCVPQAQPRQEYMKGLSIIGV----QQIDRVVEVVEET 166 Query: 144 RFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G V +D +RL + +D RK + ++I GC CT+C + RG Sbjct: 167 IKGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGE 225 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI--- 257 S + ++VD A + GVCEI L ++ A+ R G D LL+ L E+ Sbjct: 226 LASYPVEELVDRAAQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPE 280 Query: 258 -----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 G+ Y H +M+ L + + +LH+PVQS SD +L M R + Sbjct: 281 GAMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMDMKREYCI 335 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 ++++++D ++ P I I++D I GFPGETD+DF+ T+ LV++ + F ++ PR G Sbjct: 336 ADFKRVVDFLKERVPGITIATDIICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPG 395 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 TP + M EQV +VK +R L + S D +G+ VL+ + + V + Sbjct: 396 TPAAKM-EQVPAHVKKQRTKELSQLF--HSYSPYDHKIGEEQHVLVTEESFDSQYYVSHN 452 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + V++ +G +++V+I + + G+ V Sbjct: 453 RFYEQVLVPKDPAFVGKMVEVKIFEAGKHFMKGQPV 488 >gi|255994244|ref|ZP_05427379.1| RNA modification enzyme, MiaB family [Eubacterium saphenum ATCC 49989] gi|255993912|gb|EEU04001.1| RNA modification enzyme, MiaB family [Eubacterium saphenum ATCC 49989] Length = 451 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 135/463 (29%), Positives = 227/463 (49%), Gaps = 36/463 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84 + F+++ GC N DS FFS G+++ +S+ DAD++V+NTC I + E + + Sbjct: 2 KIFIETLGCPKNFNDSEYAYGSFFSAGFKKADSISDADVVVVNTCGFIHDAKVESIDAIF 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143 + K+S I +VV+GC++Q EE+ + P V++ G Y+ LPE+ + R Sbjct: 62 DAAQKKKSSAI-------LVVSGCLSQRYMEELKKEMPEVDIFAGVNDYFNLPEICKKRL 114 Query: 144 RFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 GK V T ++ F + + + I EGC+ C FC++P RG Sbjct: 115 NDGKSKGAVLTKSPQKNDFPEPG--SRAFENVNNNSYTIKISEGCNNKCAFCIIPSIRGS 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 SR + +V EA L+ G EI L+GQ+V A+ G E T + LL +S+I+G Sbjct: 173 FRSRYIQDIVKEAEFLVTLGAKEIILIGQDVTAF-GTDRRNED-TLALLLREVSKIEGEF 230 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R + ++D LI + Y+ +P+Q SD +L +M R + II+R Sbjct: 231 WIRLMYCYDNKITDELIAEIMRNKKVCKYIDMPIQHISDNVLSAMRR---GSDSDLIIER 287 Query: 322 IRSVRP---DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 IR++R DI I + I GFPGE+++DF + V + + + F YS GT + Sbjct: 288 IRALRSNIDDIHIRTTLITGFPGESEEDFNKLYEFVKEQEFDRLGVFSYSEEEGTAAAK- 346 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI------EKHGKEKGKLVGRS 432 +Q+ + ++ +R + + E + N VG+ ++VLI E+ G E+ L+GR+ Sbjct: 347 CKQIPDEIREQRRDSIMRLQSEISKNKNKMMVGKTMKVLIDGVIEGEQSGSER-MLIGRT 405 Query: 433 ----PWLQSVVLNSK---NHNIGDIIKVRITDVKISTLYGELV 468 P + + V+ ++G+ V IT +YGE V Sbjct: 406 EFDAPEIDNCVIFKPAICGKDVGEFTYVHITGSSEYDVYGEEV 448 >gi|66044640|ref|YP_234481.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. syringae B728a] gi|75502967|sp|Q4ZWM9|RIMO_PSEU2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|63255347|gb|AAY36443.1| Protein of unknown function UPF0004:Conserved hypothetical protein 1125 [Pseudomonas syringae pv. syringae B728a] Length = 447 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 146/474 (30%), Positives = 235/474 (49%), Gaps = 65/474 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 10 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ + I P V V GPQ Y Sbjct: 69 IGE-------AIKENGK--VIVTGCMG-VDASVIRNVHPSVLSVTGPQQY---------- 108 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250 RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A +R DG+ K ++L Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 225 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L + VRL Y +P + A G ++PYL +P Q S +ILK M R Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280 Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 A+E + + RI++ R PD+ I S FIVGFPGET++DF+ +D + + + F+Y Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339 Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 SP G P +N+L+ V ++VK +R + Q+ + ++ +G+ IEVLI++ Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394 Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++G VGR +P + V + GD I R+TD L+ E++ Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLDDGSTVQPGDKIMCRVTDADEYDLWAEML 447 >gi|322823384|gb|EFZ29150.1| tRNA modification enzyme, putative [Trypanosoma cruzi] Length = 530 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 126/452 (27%), Positives = 221/452 (48%), Gaps = 33/452 (7%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 F+ ++GC NV D M + GY + +DAD+ +LN+C ++ + E S + R+ Sbjct: 52 FIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNDADVYLLNSCTVKNPSEEHFISMMNRV 111 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLERARFG 146 R G L VVAGCV QA+ R + +V V+G + R+ E++ A G Sbjct: 112 R-------ATGKPL--VVAGCVPQADP----RNTQWDDVSVIGVRNIDRVGEVIHEALQG 158 Query: 147 K--RVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R++ + +K F +L +D R+ + I GC CT+C RG Sbjct: 159 HCVRLIGVNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDL 218 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-V 261 S + +V R ++ GV EI + ++V A+ G+D + L + EI+G V Sbjct: 219 RSWPIESIVLRVRSVLKEGVKEIRITSEDVGAY---GIDIKTDIVCLLRAIVKEIQGTEV 275 Query: 262 RLRYTTSHP----RDMSD-CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 +R S+P R + D I H ++ ++H+P+QSGS+RIL +M R +T E+ Sbjct: 276 MMRVGMSNPPYLLRHLDDFAAILRHPNV---YEFVHIPIQSGSNRILNAMQREYTLEEFH 332 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 + + RIRSV P++ +++D I FPGE + ++R TM+L D + + ++ PR TP + Sbjct: 333 ECVHRIRSVVPNVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAA 392 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 +M +Q+ +V R L + + D VG++ V + + +K LVG + Sbjct: 393 SM-KQIPTDVAKRRTSELTEFFNSYRTL--DHMVGEVHSVALLETAHDKHHLVGHTKAYV 449 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V+++ + +G+ + V I ++ G ++ Sbjct: 450 QVLVDPQEARLGETVTVVIMSTTKYSVVGRVL 481 >gi|260431873|ref|ZP_05785844.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415701|gb|EEX08960.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] Length = 418 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 128/439 (29%), Positives = 203/439 (46%), Gaps = 38/439 (8%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P +F + GC++N Y++ M+++ G D +++NTC + +A K Sbjct: 3 PPKF--TTLGCRLNAYETEAMKELSQQAGL--------TDAVIVNTCAVTAEAVRKARQE 52 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-- 141 + ++R +E + ++V GC AQ E + V+ V+G R PE + Sbjct: 53 IRKLR-------RENPNARLIVTGCAAQTEPQTFADMDE-VDAVIGNTEKMR-PETWKGM 103 Query: 142 RARFGKRV----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 A F VD SV + L +DG R R A++ +Q GCD CTFC++PY Sbjct: 104 AADFIGETEAVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPY 158 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG S VVD+ ++L+D G E+ L G ++ +W G L ++ L + Sbjct: 159 GRGNSRSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPASPKLGDLVMRILKLV 217 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 L RLR ++ ++ + L++A LMP+LHL +Q G D ILK M RRH + + Sbjct: 218 PDLPRLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIR 277 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + R +RP+I +D I GFP ET+ F ++ LV F YS R GTP + Sbjct: 278 FTEEARKLRPEITFGADIIAGFPTETEAHFENSLKLVTDCDLTWLHVFPYSKREGTPAAR 337 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 + +QV+ V ER L++ Q A +G+ +L+E +GR+ Sbjct: 338 IPQQVNGKVIKERAARLREAGDAQVARHLAAQLGKTHHILMEN------PHMGRTEQFTE 391 Query: 438 VVLNSKNHNIGDIIKVRIT 456 V + G I+ RIT Sbjct: 392 VTFATPQPE-GQIVTARIT 409 >gi|332885636|gb|EGK05882.1| MiaB-like tRNA modifying enzyme [Dysgonomonas mossii DSM 22836] Length = 436 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 127/427 (29%), Positives = 203/427 (47%), Gaps = 17/427 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + G R + AD+ V+NTC + E A +K R Sbjct: 16 TLGCKLNFAETSAIGRQLSQVGVRRSRDGEVADICVINTCSVTEFADKKC-------RQA 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 IKE V+V GC AQ + E+I + V+ Q + L E + K VV Sbjct: 69 VRKMIKENPGAYVIVTGCYAQLKPEDIAGIKGVDIVLGSEQKLDVVAYLDELKKKDKGVV 128 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 T S +K + +R R FL +Q+GCD FC+FC +P+ RG + S+ + Sbjct: 129 HT--SKTNKIKSFVPSCSQDDRTR---YFLKVQDGCDYFCSFCTIPFARGRSRNGSIESM 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V +A+++ + G EI L G N+ + G+ GE TF DL+ +L E++G+ R R ++ P Sbjct: 184 VQQAKEVAEKGGKEIVLTGVNIGDF-GR-TTGE--TFFDLVKALDEVEGIERYRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I+ P+ H+P+QSGSD +LK M RR+ +R +++I+SV PD Sbjct: 240 NLLTDEIIQFVAQSKRFAPHFHIPLQSGSDAVLKLMRRRYDTALFRHKVEKIKSVMPDAF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I D IVG GETD+ F ++ + ++Q F YS R T + +VD K R Sbjct: 300 IGVDVIVGTRGETDEYFDEAKAFLESLDFSQLHVFTYSERPNTQALKIDHEVDPKTKHAR 359 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450 L E+ +F + G +VL E H + + G + V H +I Sbjct: 360 CKALLDLSDEKLQAFYRSQQGTKRKVLFE-HTQHDSVMYGFTENYIKVETQYHAHKANEI 418 Query: 451 IKVRITD 457 + + D Sbjct: 419 KMITLGD 425 >gi|313206227|ref|YP_004045404.1| SSU ribosomal protein s12p methylthiotransferase [Riemerella anatipestifer DSM 15868] gi|312445543|gb|ADQ81898.1| SSU ribosomal protein S12P methylthiotransferase [Riemerella anatipestifer DSM 15868] gi|315023087|gb|EFT36100.1| possible 2-methylthioadenine synthetase [Riemerella anatipestifer RA-YM] gi|325336326|gb|ADZ12600.1| 2-methylthioadenine synthetase [Riemerella anatipestifer RA-GD] Length = 434 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 128/456 (28%), Positives = 225/456 (49%), Gaps = 42/456 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSF 83 ++ V + GC N+YDS + + G E V+ + D++V+NTC + A E+ + + Sbjct: 9 KKINVVTLGCSKNLYDSEVLMGQLKANGKEVVHEQERGDIVVINTCGFIDNAKEESINTI 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L + +++ V V GC+++ ++L+ P V+ G + LP LL+ Sbjct: 69 LDYVEAKNRGEVEQ-----VFVTGCLSERYKPDLLKEIPDVDQYFGTRD---LPILLKH- 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + DY E ERL+ Y A+L I EGCD+ C+FC +P RG + Sbjct: 120 ------LGADYKHELVGERLTTTPKHY-------AYLKISEGCDRPCSFCAIPLMRGGHV 166 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 S + ++V+EA+KL G E+ L+ Q++ + GLD +K DLL L ++ G+ Sbjct: 167 STPIEKLVEEAKKLAKKGTKELILIAQDLTYY---GLDIYKKRALGDLLKELVKVDGIEW 223 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R + P + ++ + + Y+ +P+Q + +LKSM R T + ++++ Sbjct: 224 IRLHYAFPTGFPEEVLDIIREESKVCNYIDIPLQHINTDLLKSMKRGTTHEKTNALLNKF 283 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P++A+ + IVG+PGET++ F+ + V + + + F YS T + + V Sbjct: 284 REKVPNMAVRTTLIVGYPGETEERFQELKNWVKEQRFDRLGCFTYSHEENTTAYQLEDDV 343 Query: 383 DENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435 + VK E ++ LQ ++ ++ N VGQ+ + ++ KE VGR SP + Sbjct: 344 PQEVKEAREEEIMALQSQISWEK---NQEKVGQVFRCIFDR--KEGNYFVGRTEFDSPDV 398 Query: 436 QSVVLNSKNH---NIGDIIKVRITDVKISTLYGELV 468 + VL S + +IG+ VRIT + LYGELV Sbjct: 399 DNTVLVSAENTYISIGEFANVRITSAEEYDLYGELV 434 >gi|260591614|ref|ZP_05857072.1| Fe-S oxidoreductase [Prevotella veroralis F0319] gi|260536414|gb|EEX19031.1| Fe-S oxidoreductase [Prevotella veroralis F0319] Length = 454 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 118/404 (29%), Positives = 191/404 (47%), Gaps = 23/404 (5%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N ++ ++ G + AD+ ++NTC + E A K + R+ Sbjct: 18 GCKLNFSETSTFARTLYNMGVREAKKSESADICLINTCSVTEVADHKCRQIIHRM----- 72 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 +++ V+V GC AQ E E I + V++V+G L + L A + K VD+ Sbjct: 73 --VRQNPGAFVIVTGCYAQLESETIAKIEG-VDLVLGSNEKADLIQYLSDA-WNKTDVDS 128 Query: 153 --DYSVED--------KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 D E+ K + + +R FL +Q+GC+ FCT+C +PY RG Sbjct: 129 IGDNPTEEGKGQYHSVKTKDIKSFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFS 188 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 + S++ +V +A + G EI L G N+ + GE+ F DL+ +L +++G+ R Sbjct: 189 RNPSIASLVQQAEEAAKEGGKEIVLTGVNIGDF--GETTGER--FLDLVKALDKVEGIER 244 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 R ++ P + D LI+ MP+ H+P+QSGSD +LK M+RR+ + I+ I Sbjct: 245 FRISSLEPDLIDDDLIEYCAQSRAFMPHFHIPLQSGSDEVLKLMHRRYDTKLFAHKINLI 304 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + PD I D +VG GE + F + + + Q F YS R GT ++ V Sbjct: 305 KEKMPDAFIGVDVMVGSRGERPEYFEDCYNFLASLPVTQLHVFPYSERPGTSALSIPYVV 364 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 D K R L K E+ +F A +GQ +VL EK + K Sbjct: 365 DNREKKHRAHKLLKLSDEKTHAFYAAHIGQEADVLFEKAARGKA 408 >gi|213969167|ref|ZP_03397306.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301383939|ref|ZP_07232357.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. tomato Max13] gi|302064176|ref|ZP_07255717.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. tomato K40] gi|302134739|ref|ZP_07260729.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926165|gb|EEB59721.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|330872676|gb|EGH06825.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967890|gb|EGH68150.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016417|gb|EGH96473.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 447 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 146/474 (30%), Positives = 235/474 (49%), Gaps = 65/474 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 10 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ + I P V V GPQ Y Sbjct: 69 IGE-------AIKENGK--VIVTGCMG-VDASVIRAVHPSVLSVTGPQQY---------- 108 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250 RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A +R DG+ K ++L Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 225 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L + VRL Y +P + A G ++PYL +P Q S +ILK M R Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280 Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 A+E + + RI++ R PD+ I S FIVGFPGET++DF+ +D + + + F+Y Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339 Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 SP G P +N+L+ V ++VK +R + Q+ + ++ +G+ IEVLI++ Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394 Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++G VGR +P + V + GD I R+TD L+ E++ Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEML 447 >gi|149193779|ref|ZP_01870877.1| MiaB-like tRNA modifying enzyme [Caminibacter mediatlanticus TB-2] gi|149135732|gb|EDM24210.1| MiaB-like tRNA modifying enzyme [Caminibacter mediatlanticus TB-2] Length = 405 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 107/380 (28%), Positives = 197/380 (51%), Gaps = 32/380 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F K++GC+ N++D+ M+++ + + V + +DAD+I++N+C + A + S++ Sbjct: 2 KVFFKTFGCRSNIFDTEIMKNIL-KEKVDIVKNENDADIIIVNSCTVTNFADRDIRSYVN 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + N K ++ GC A +GE++ + S + NV+ G + + + L+ Sbjct: 61 KFSNKK-----------IIFTGCGAYTQGEKLFKESKVFNVL-GHKFKEEIDKFLDFK-- 106 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G + D D+ + E AF+ IQEGCD C +C++P RG S Sbjct: 107 GINLGDFDFVNKKIVESFD----------KTKAFIKIQEGCDFECAYCIIPKVRGSSRSI 156 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S +++E +KL DNG+ E L G N+ ++ GK + + S L+ +S I+G+ R+R Sbjct: 157 EESLILEEIKKLRDNGISEFVLTGINMGSY-GKDTN---TSLSKLIEKISNIRGVKRIRL 212 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 + P + D LI+ + +L +LH+ +Q SD++L+ M RR+ + +R+ S+ Sbjct: 213 GSLEPSQIDDRLIELTQN-GILEKHLHIALQHTSDKMLRIMKRRNRVSSTLPLFERLASM 271 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 +IA+ +DFIVG PGE+++ F + K F+YSPR GT + M + V + Sbjct: 272 --NIALGTDFIVGHPGESEEIFNEALSNFKKYPLTHIHLFRYSPREGTLSATMKQDVKGD 329 Query: 386 VKAERLLCLQKKLREQQVSF 405 V +R L++ +++ F Sbjct: 330 VSKKRAKILEEIVKKNNYEF 349 >gi|119871859|ref|YP_929866.1| RNA modification protein [Pyrobaculum islandicum DSM 4184] gi|119673267|gb|ABL87523.1| RNA modification enzyme, MiaB family [Pyrobaculum islandicum DSM 4184] Length = 415 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 221/459 (48%), Gaps = 62/459 (13%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R +V++YGC + D+ E + GYE+V+++D+AD+I++ TC +RE + L Sbjct: 3 RIYVETYGCWLAKADA---EILRQRLGYEQVSNVDEADVILVYTCAVREDGEVRQ---LA 56 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIR L +K G +L +VAGC+A R P + P P +E + Sbjct: 57 RIREL----VKLGKEL--IVAGCLA--------RLRPYTIKSLAPHAKLIYPSEIEGGK- 101 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR---GIE 202 + K+E RG+ + +Q GC CTFC YTR G Sbjct: 102 -----ERSMKTLPKYE------------RGLIYTVPLQVGCLGNCTFCATKYTRGGAGYV 144 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNV------NAWRGKGLDGEKCTFSDLLYS-LS 255 S VV ++ + G EI L GQ+V WRG T DLL L Sbjct: 145 KSADPDDVVRHIKEAVAKGAREIYLTGQDVITYGFDAGWRG------GWTLPDLLDRILK 198 Query: 256 EIKGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 E++G R+R S P D L+ + Y HLPVQSGSD++L +M R++T Sbjct: 199 EVEGEYRVRIGMSEPWIFEKFVDQLLDIIKRDHRVYRYFHLPVQSGSDKVLVAMGRKYTV 258 Query: 313 YEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 EYR +I RIR D + I++D IVGFPGET++DF+ T+ LV+++ + + ++SPR Sbjct: 259 EEYRGLIRRIRRELGDNVFIATDIIVGFPGETEEDFQETVKLVEELQFDKIHVARFSPRP 318 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 T + M QV + K R L + N A VG+ VLI++ + G +VGR Sbjct: 319 FTEAAVMPRQVPDAEKKRRSKILSEVAMRIAHLRNGAQVGKRDVVLIDE--VDHGLVVGR 376 Query: 432 SPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + VV+ + + +G+ + VRI LYGE++ Sbjct: 377 ASDYRQVVVKRGAGDGLLGEFVNVRIAAASPVYLYGEIL 415 >gi|291395737|ref|XP_002714277.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1 [Oryctolagus cuniculus] Length = 571 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 127/457 (27%), Positives = 221/457 (48%), Gaps = 41/457 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 63 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 119 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K VV+AGCV QA+ + + V+G Q R+ E++E Sbjct: 120 NSIKKAQEENKK------VVLAGCVPQAQPRQDYLKG---LSVIGVQQIDRVVEVVEETI 170 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V E+ RL + +D RK + ++I GC CT+C + RG Sbjct: 171 KGHSVRLLGQKKENG-RRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257 S + ++VD A++ GVCEI L ++ A+ R G D LL+ L ++ Sbjct: 230 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVDVIPEG 284 Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 G+ Y H ++M+ L + + +LH+PVQS SD +L +M R + Sbjct: 285 AMLRLGMTNPPYILEHLQEMAKIL-----NHPRVYAFLHIPVQSASDSVLMAMKREYCVA 339 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 +++ ++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ PR GT Sbjct: 340 DFKSVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGT 399 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGR 431 P + M EQV ++K +R K L + S+N D +G+ +VL+ + + V Sbjct: 400 PAAKM-EQVPAHMKKQRT----KDLSQVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAH 454 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + + V++ +G +++V I + + G+ V Sbjct: 455 NRFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 491 >gi|254797123|ref|YP_003081961.1| hypothetical protein NRI_0751 [Neorickettsia risticii str. Illinois] gi|254590369|gb|ACT69731.1| conserved hypothetical protein [Neorickettsia risticii str. Illinois] Length = 416 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 129/428 (30%), Positives = 207/428 (48%), Gaps = 29/428 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S ++++ V D + I++NTC + +A KV +IR Sbjct: 4 VITFGCRLNFYESDLIKNL--------VGIRDSRECIIINTCAVTNEAVRKVKQ---KIR 52 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 KE + ++V GC Q + P V V+G ++ + Sbjct: 53 KCH----KEEPEKKIIVVGCGPQLD-PHAYSHMPGVFKVLGNIEKLKVESYTSEQKIA-- 105 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V D ++ E F + RKR AFL IQ GCD CTFC + RG S Sbjct: 106 VADITHAPETAFSGTMMPVVSTVRKR---AFLEIQNGCDHDCTFCAITLARGKNRSSDAI 162 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++V E RK++ G+ E+ L G ++ + GK L G+ L L+++ L RLR ++ Sbjct: 163 KIVSEVRKMVAFGINEVVLTGVDITDY-GKDLFGKPALVYLLKKILNDVPELKRLRLSSV 221 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++SD I+ LMP+LHL +QSG ILK M RRHT + + +I +VRP+ Sbjct: 222 DVSELSDDFIELFATEARLMPHLHLSIQSGDSIILKRMKRRHTPEQVVEFHSKILAVRPE 281 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +D IVGFP E+++ F + +L+ ++ F +SP+ GT + ++ QV+ VK Sbjct: 282 TGFGADIIVGFPTESEEMFHNSYELIKRLAIPYLHVFPFSPKKGTKAA-LMPQVEGVVKK 340 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 R L + +E FN VG+I +++E+ VGRS V L+ + Sbjct: 341 RRARKLIELGKENLQIFNTVQVGRIHNLVLERDD------VGRSENFCLVKLDRAVSDDT 394 Query: 449 DIIKVRIT 456 II+V+IT Sbjct: 395 GIIRVKIT 402 >gi|225164430|ref|ZP_03726689.1| 2-alkenal reductase [Opitutaceae bacterium TAV2] gi|224800953|gb|EEG19290.1| 2-alkenal reductase [Opitutaceae bacterium TAV2] Length = 473 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 128/447 (28%), Positives = 214/447 (47%), Gaps = 31/447 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL---GRI 87 S GC N+ DS M G V D AD++++NTC + + E+ + + + Sbjct: 11 SLGCAKNLVDSEIMIGHLHQAGMSVVPETDQADVVIVNTCSFIDSSKEESINHILAAHQA 70 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA---R 144 R L R ++ ++VAGC++Q +E+ P V+ +G + ++E + Sbjct: 71 RGLSKRRKEQK----LIVAGCMSQRFSKELPAAMPEVDAFIGLDQLTGIAPIIEEITGRK 126 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNR-KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK+ ++ +E + + D R TA++ I EGC+ C FC++P RG Sbjct: 127 RGKKDAPANF-IEGRSTYIPDYDTPRFRLTPKHTAYIKIAEGCNHPCAFCIIPQIRGRHR 185 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQN-----VNAWRGKG-----LDGEKCT-FSDLLY 252 SRS+ VV EAR+L+ GV E+ L+ Q+ ++ W + +D + T + LL Sbjct: 186 SRSVESVVAEARRLVAEGVKELNLISQDTTYFGMDTWEQRPNPRSPVDSSRGTALTTLLR 245 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L+ I+G +R +HP SD LI+ + Y+ +P+Q SD +L M R + Sbjct: 246 ELNAIEGDFWIRLLYTHPAHWSDELIRTIAACPKVARYIDIPLQHISDHMLGLMQRETSG 305 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 R +I RIR+ P IA+ + FIVGFPGET DD + + + F+YS G Sbjct: 306 AYIRDLIARIRAGIPGIAVRTTFIVGFPGETPDDVEELCHFIRDTQFERLGVFRYSQEEG 365 Query: 373 TPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 T + M+ Q+ K R + LQK++ Q ++ VG+ + VL+E+ G +G+ Sbjct: 366 TKAARMVGQLSFKAKDARWHQTMSLQKEIAAQ---VSERYVGRTLRVLVEEPGIARGE-- 420 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRIT 456 +P + V + +G+ V IT Sbjct: 421 ADAPDIDGRVYVPRELPVGEFADVTIT 447 >gi|257063782|ref|YP_003143454.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Slackia heliotrinireducens DSM 20476] gi|256791435|gb|ACV22105.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Slackia heliotrinireducens DSM 20476] Length = 446 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 123/449 (27%), Positives = 217/449 (48%), Gaps = 25/449 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P F+ + GC N DS M+ S G+ V+ +DAD +++NTC + A E+ Sbjct: 18 IPSVNFI-TLGCAKNEVDSADMQRRLVSAGFAIVDDAEDADAVIVNTCSFIQAAIEESID 76 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + + L N I +G L+V AGC+ G+++ + V + E+++R Sbjct: 77 VILEVAGLAN--IADGSSKLIV-AGCMPARFGDDLESELNEASAFVPCSKEDDIVEVVQR 133 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G F R+ + G A++ I +GC++FC+FC +PY RG Sbjct: 134 T-LGVNPA--------PFARVDVESGP------AAAYVKISDGCNRFCSFCSIPYIRGRY 178 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S ++ + I G EITL+GQ+ W G + EK T + LL +L+E Sbjct: 179 HSFPYERIRASVEQCIAEGSVEITLIGQDTGCW-GSDFE-EKSTTAQLLSNLAEEFPDTW 236 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 R P ++D L+ A D + YL +P+Q + +LKSM R+ +A E+ ++++RI Sbjct: 237 FRIMYVEPDGITDELLDAIAAHDNVCDYLDMPLQHANPELLKSMRRKGSAPEFLKLLERI 296 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P I + + I GFPGET++ F M+ +++ + F YS GT ++ +QV Sbjct: 297 RTRVPGITLRTTLITGFPGETEEAFDELMEFLEEADFDYVGVFPYSREEGTRAYDLPDQV 356 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVV 439 +E +K R ++ +G+ ++VL+ E+ G+ G+ + ++P + VV Sbjct: 357 EEELKVARAQEVRDLCDAVGSVHTADRIGKELDVLVLGAEEDGQLFGRAMCQAPDVDGVV 416 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 +G+I++V I D + GE++ Sbjct: 417 Y-VDGGEVGEIVRVTIVDTLAYDMEGEII 444 >gi|254369038|ref|ZP_04985051.1| hypothetical protein FTAG_00878 [Francisella tularensis subsp. holarctica FSC022] gi|157121959|gb|EDO66129.1| hypothetical protein FTAG_00878 [Francisella tularensis subsp. holarctica FSC022] Length = 439 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 129/457 (28%), Positives = 215/457 (47%), Gaps = 52/457 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC N+ DS R+ ++GY+ V+S D+AD++++NTC A ++ Sbjct: 4 IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G I E G +LV GC+ + + I + P V + GPQ Y L +E Sbjct: 63 VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + D+ + + + Y ++L I EGC+ CTFC++P RG Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 SRS+ ++ EA KL + GV E+ ++ Q+ +A W K + DL Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEY---QSNIIDLA 219 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L ++ RL Y +P + A G + +PYL + +Q S +LK M R Sbjct: 220 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVSLQHSSPEVLKRMKRPAH 276 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I++ R + PDI ISS FIVGFPGET+ DF +D +K + FKYS Sbjct: 277 TQKTLDRINKWRDICPDITISSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVE 336 Query: 372 GTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 G + + E +K +RL + LQ ++ ++ VG +V+I+ K++ Sbjct: 337 GAKANQFDNLISEEIKQQRLDEFMGLQAQISADKLQ---RFVGTEQQVIIDVINKDENYA 393 Query: 429 VGRSPWL------QSVVLNS--KNHNIGDIIKVRITD 457 +GR+ + Q ++ ++ +N +G+ V IT+ Sbjct: 394 IGRTKYDAPEVDGQVIIGDALERNLKVGEFANVEITE 430 >gi|28871162|ref|NP_793781.1| hypothetical protein PSPTO_4019 [Pseudomonas syringae pv. tomato str. DC3000] gi|81730041|sp|Q87Y01|RIMO_PSESM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|28854412|gb|AAO57476.1| conserved hypothetical protein TIGR01125 [Pseudomonas syringae pv. tomato str. DC3000] Length = 443 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 143/467 (30%), Positives = 231/467 (49%), Gaps = 64/467 (13%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ +GYE V + +DAD++V+NTC + A + +G Sbjct: 12 SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEVIGE---- 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 IKE G V+V GC+ + I P V V GPQ Y ++VV Sbjct: 68 ---AIKENGK--VIVTGCMG-VDASVIRAVHPSVLSVTGPQQY-------------EQVV 108 Query: 151 DTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + V +D + +V G A+L I EGC+ C+FC++P RG +SR Sbjct: 109 NAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSR 168 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257 + V+DEA++L+ +GV E+ ++ Q+ +A +R DG+ K ++L +L + Sbjct: 169 PVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTELCQALGSM 228 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 VRL Y +P + A G ++PYL +P Q S +ILK M R A+E + Sbjct: 229 GVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR--PAFEDKT 283 Query: 318 IIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + RI++ R PD+ I S FIVGFPGET++DF+ +D + + + F+YSP G P Sbjct: 284 LA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAP 342 Query: 375 GSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 +N+L+ V ++VK +R + Q+ + ++ +G+ IEVLI++ ++G V Sbjct: 343 -ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV-DDRGA-V 396 Query: 430 GR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468 GR +P + V + GD I R+TD L+ E++ Sbjct: 397 GRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLWAEML 443 >gi|71661088|ref|XP_817570.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener] gi|70882770|gb|EAN95719.1| tRNA modification enzyme, putative [Trypanosoma cruzi] Length = 530 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 126/458 (27%), Positives = 221/458 (48%), Gaps = 45/458 (9%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 F+ ++GC NV D M + GY + +DAD+ +LN+C ++ + E S + R+ Sbjct: 52 FIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNDADVYLLNSCTVKNPSEEHFISMMNRV 111 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLERARFG 146 R G L VVAGCV QA+ R + +V V+G + R+ E++ A G Sbjct: 112 R-------ATGKPL--VVAGCVPQADP----RNTQWDDVSVIGVRNIDRVGEVIHEALQG 158 Query: 147 K--RVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R++ + +K F +L +D R+ + I GC CT+C RG Sbjct: 159 HCVRLIGVNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDL 218 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-V 261 S + +V R ++ GV EI + ++V A+ G+D L + EI+G V Sbjct: 219 RSWPIESIVLRVRSVLKEGVKEIRITSEDVGAY---GIDINTDIICLLRAIVKEIQGTEV 275 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLM------PYLHLPVQSGSDRILKSMNRRHTAYEY 315 +R S+P L++ D L+ ++H+P+QSGS+RIL +M R +T E+ Sbjct: 276 MMRVGMSNP----PYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEF 331 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + + RIRSV P++ +++D I FPGE + ++R TM+L D + + ++ PR TP Sbjct: 332 YECVHRIRSVVPNVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPA 391 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFN-----DACVGQIIEVLIEKHGKEKGKLVG 430 ++M +Q+ +V +++ E FN D VG++ V + + +K LVG Sbjct: 392 ASM-KQIPTDVA-------KRRTSELTAFFNSYRTLDHMVGEVHSVALLETAHDKHHLVG 443 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V+++ + +G+ + V I ++ G ++ Sbjct: 444 HTKAYVQVLVDPQEARLGETVTVVIMSTTKYSVVGRVL 481 >gi|260911507|ref|ZP_05918095.1| Fe-S oxidoreductase [Prevotella sp. oral taxon 472 str. F0295] gi|260634371|gb|EEX52473.1| Fe-S oxidoreductase [Prevotella sp. oral taxon 472 str. F0295] Length = 446 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 126/434 (29%), Positives = 206/434 (47%), Gaps = 25/434 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ M G N + AD+ ++NTC + E A K + R+ Sbjct: 16 TLGCKLNFSETSTFGQMLQDMGVRTANEGEPADICLINTCSVTEVADHKCRQIIHRM--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARF-GK 147 +++ VVV GC AQ E E R S I V++V+G L + L A G+ Sbjct: 73 ----VRKNPGAFVVVTGCYAQLESE---RVSAIEGVDLVLGSNEKANLIQYLNDAWADGQ 125 Query: 148 R--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 R + +SV+ K + +R FL +Q+GCD FCT+C +P+ RG + Sbjct: 126 RGSALHRHFSVKTK--DIKTFAPSCSRGNRTRYFLKVQDGCDYFCTYCTIPFARGFSRNP 183 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S+S +V +A+ + G EI L G N+ ++G+G + F DL+ +L +++G+ R R Sbjct: 184 SISSLVQQAQDAANEGGKEIVLTGVNIGEFKGEGNE----RFIDLVKALDQVEGIQRFRI 239 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ P ++D LI MP+ H+P+QSGSD +LK M RR+ + + I+ Sbjct: 240 SSIEPNLLTDELIDYCATSRAFMPHFHIPLQSGSDEVLKLMQRRYDTALFAHKVQLIKQR 299 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ I D +VG GE F + + + +Q F YS R GT + V + Sbjct: 300 IPNAFIGVDVMVGSRGEEPAYFEDCYNFLKSLDISQLHVFPYSERPGTAALRIPYVVSDA 359 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN---S 442 K R L + E+ +F + +G +VL EK K K + G +P V L + Sbjct: 360 EKRRRSKLLLELSDEKLEAFYASQIGSQSQVLFEKAAKGKA-MHGFTPNYVRVELPARLA 418 Query: 443 KNHNIGDIIKVRIT 456 K+ ++ VR+T Sbjct: 419 KDEFDNQLLPVRLT 432 >gi|221198052|ref|ZP_03571098.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] gi|221204390|ref|ZP_03577407.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221175247|gb|EEE07677.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221181984|gb|EEE14385.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] Length = 453 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 133/480 (27%), Positives = 224/480 (46%), Gaps = 67/480 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 5 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G ++ P V V GP + + Sbjct: 64 IGEA-------LTENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQA 114 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + K D F L + G A+L I EGC+ CTFC++P R Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPPAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K + Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221 Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298 DL+ +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + + + + R + PD+ I S FI GFPGET++ F +D + + Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIE 415 + F YSP G + + + ++V+ E R + + +++ Q+++ VG+ ++ Sbjct: 337 LDRVGCFAYSPVEGASANELDGALPDDVREERRARFMEVAEEVSAQRIARK---VGKTLK 393 Query: 416 VLIEKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 VLI++ E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 394 VLIDEVSDEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453 >gi|163868318|ref|YP_001609527.1| ribosomal protein S12 methylthiotransferase [Bartonella tribocorum CIP 105476] gi|238065292|sp|A9IUA4|RIMO_BART1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|161017974|emb|CAK01532.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 437 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 135/460 (29%), Positives = 217/460 (47%), Gaps = 43/460 (9%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + P+ FV S GC + DS R+ S+GYE AD++++NTC + A ++ Sbjct: 2 VAPRISFV-SLGCPKALVDSERIITSLRSEGYEISRQHQGADVVIVNTCGFLDSARKESL 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + + + +KE G V+V GC+ A+ + I + P V + GPQ Y + E + Sbjct: 61 ANI-------DEALKENGK--VIVTGCLG-ADPDVIRQTYPNVLAITGPQAYESVIEAVH 110 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A + D F L G R A+L I EGC C+FC++P RG Sbjct: 111 TAI---------PPIHDPFLDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLRGD 160 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNV-----------NAWRGKGLDGEKCTFSDL 250 SR +S V+ EA KL+ GV E+ ++ Q+ N+W+ + + K F DL Sbjct: 161 LTSRPISDVLREAEKLVQAGVKELLVISQDTSAYGIDLKYLENSWKDRTI---KTKFFDL 217 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L ++ VR+ Y +P D +I+ +L PYL +P Q S +L+ M R Sbjct: 218 CRELGDMGIWVRMHYVYPYPH--VDEVIELMAAKKIL-PYLDIPFQHASPTVLRHMKRPA 274 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + + I++ R + PD+ + S FIVGFPGET++DF ++ ++ +A FKY Sbjct: 275 LMEKTNRRIEKWRKICPDLTLRSTFIVGFPGETNEDFNMLLEWLEDAKIERAGCFKYEEV 334 Query: 371 LGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK-EKGK 427 G +++ LE + E+VK R K ++ +G+ ++VLI E GK KG+ Sbjct: 335 KGAVANDLGLENIPEDVKENRWHRFMAKQQQISTHLLKKKIGKRLQVLIDESQGKVAKGR 394 Query: 428 LVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYG 465 +P + VV S +G+ + V+I LYG Sbjct: 395 SQYDAPEIDGVVHISSRRPLRVGEFVTVKIEQSDAYDLYG 434 >gi|158292783|ref|XP_314113.4| AGAP005211-PA [Anopheles gambiae str. PEST] gi|157017155|gb|EAA09381.5| AGAP005211-PA [Anopheles gambiae str. PEST] Length = 553 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 128/468 (27%), Positives = 214/468 (45%), Gaps = 54/468 (11%) Query: 22 IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 ++P Q ++K++GC N D+ M GY + D ADL VLN+C ++ + + Sbjct: 61 VIPETQHIYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKDSADLWVLNSCTVKNPSEDT 120 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTYYRLP 137 RN + + G VVVAGCV QA RS + VVG Q R+ Sbjct: 121 -------FRNEIEAAHQAGKH--VVVAGCVPQAAP-----RSDYLKGLSVVGVQQIDRVA 166 Query: 138 ELLERARFGKRV-------VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 E++E G V VD K + RK + + I GC C Sbjct: 167 EVVEETLKGHSVRLLQAKKVDGRKVAGPKLALPKV------RKNPLIEVIPINSGCLNAC 220 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 T+C + R +S + ++VD A+++ +GVCEI L ++ + G+ + + +L Sbjct: 221 TYCKTKFARADLVSYPVQEIVDRAQQVFQDGVCEIWLTSEDTGTY-GRDIGS---SLPEL 276 Query: 251 LYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 L+ L E+ G+ Y H +M+ L + +LH+PVQSGSD I Sbjct: 277 LWQLVEVIPEGCMMRLGMTNPPYILEHLDEMAKILSHPR-----VYSFLHIPVQSGSDAI 331 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L M R + ++ +++D +R+ P I I++D I GFPGET+ DF T+ L +K + Sbjct: 332 LGEMRREYCVKDFERMVDFLRAQVPGITIATDIICGFPGETEADFDDTLALCEKYQFPSL 391 Query: 363 FSFKYSPRLGTPGSNMLEQVDENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 F ++ PR GTP + M + VK +RL L + G VL+ + Sbjct: 392 FINQFFPRPGTPAAKMTKVPANEVKTRTKRL----TDLFHSYEPYKKYEAGTKQTVLVTE 447 Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ VG + + + ++L N+ +G ++V IT +++G+++ Sbjct: 448 ISHDRKHFVGHNKFYEQILLPMHNNLLGKQVEVEITGCTKFSMFGKVI 495 >gi|149731822|ref|XP_001494687.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1 [Equus caballus] Length = 578 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 124/456 (27%), Positives = 221/456 (48%), Gaps = 39/456 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 63 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 119 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K +V+AGCV QA+ + + ++G Q R+ E++E Sbjct: 120 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V +D +RL + +D RK + ++I GC CT+C + RG Sbjct: 171 KGHSVRLLGQK-KDNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257 S + ++VD A++ GVCEI L ++ A+ G+ + + LL+ L E+ Sbjct: 230 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TSLPALLWKLVEVIPEGA 285 Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G+ Y H +M+ L + + +LH+PVQS SD +L M R + + Sbjct: 286 MLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDTVLMEMKREYCVAD 340 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +++++D ++ P I I++D I GFPGET++DF+ T+ LV++ + F ++ PR GTP Sbjct: 341 FKRVVDFLKEKVPGITIATDIICGFPGETNEDFQETVKLVEEYKFPSLFINQFYPRPGTP 400 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS 432 + M EQV VK +R L + S+N D VG+ +VL+ + + V + Sbjct: 401 AAKM-EQVPAQVKKQRTKDLSRVFH----SYNPYDHKVGERQQVLVTEESFDSKFYVAHN 455 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + V++ +G +++V I + + G+ V Sbjct: 456 RFYEQVLVPKNPTFMGKMVEVDIYESGKHFMKGQPV 491 >gi|330894643|gb|EGH27304.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. mori str. 301020] Length = 447 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 146/474 (30%), Positives = 234/474 (49%), Gaps = 65/474 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 10 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ + I P V V GPQ Y Sbjct: 69 IGE-------AIKENGK--VIVTGCMG-VDANVIRDVHPSVLSVTGPQQY---------- 108 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250 RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A +R DG+ K ++L Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 225 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L + VRL Y +P + A G ++PYL +P Q S +ILK M R Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280 Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 A+E + + RI++ R PD+ I S FIVGFPGET++DF+ +D + + + F+Y Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339 Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 SP G P +N+L+ V ++VK +R + Q+ + ++ +G+ IEVLI++ Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394 Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++G VGR +P + V GD I R+TD L+ E++ Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFFGLEEGSTVQPGDKIMCRVTDADEYDLWAEML 447 >gi|226954088|ref|ZP_03824552.1| MiaB-like tRNA modifying enzyme YliG [Acinetobacter sp. ATCC 27244] gi|294650305|ref|ZP_06727673.1| 2-methylthioadenine synthetase [Acinetobacter haemolyticus ATCC 19194] gi|226835129|gb|EEH67512.1| MiaB-like tRNA modifying enzyme YliG [Acinetobacter sp. ATCC 27244] gi|292823835|gb|EFF82670.1| 2-methylthioadenine synthetase [Acinetobacter haemolyticus ATCC 19194] Length = 447 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 134/468 (28%), Positives = 222/468 (47%), Gaps = 50/468 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GY+ + D ADL+V+NTC E A ++ Sbjct: 4 PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVINTCGFIESAVQESLDA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + +N R V+V GC+ + E ++I + P V V G Y + E + Sbjct: 63 IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + F L + + G A+L I EGC+ CTFC++P RG + Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGVRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + QV+DEA L GV E+ ++ Q+ +A W G+ + K F D+ Sbjct: 165 SRPVGQVLDEAAALKRAGVKEVLVISQDTSAYGVDTKYKLDFWNGQPV---KTKFYDMCE 221 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +L ++ VRL Y +P + + A G ++PYL +P Q S RILK M R + Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAAIDLMAQGK---ILPYLDIPFQHASPRILKLMKRPAHS 278 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + + R P++ I S F+VGFPGET++DF+ +D + + + F YSP G Sbjct: 279 ENTLERLKLWREKCPELVIRSTFVVGFPGETEEDFQMLLDWLKEAQLDRVGCFTYSPVEG 338 Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 +++ + V E VK ER + +Q+++ ++ +GQ + VL++ +E V Sbjct: 339 ATANDLPDHVPEEVKQERYERFMEVQQQISAAKLQKR---IGQRMIVLVDSLEEEFPVAV 395 Query: 430 GRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 RS P + V ++ G++++V ITD L+ +L+ Sbjct: 396 ARSYADAPEIDGNVFVEDIDKSVIQAGNLLEVEITDADEYDLFAKLIA 443 >gi|114705323|ref|ZP_01438231.1| hypothetical protein FP2506_10301 [Fulvimarina pelagi HTCC2506] gi|114540108|gb|EAU43228.1| hypothetical protein FP2506_10301 [Fulvimarina pelagi HTCC2506] Length = 424 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 124/401 (30%), Positives = 189/401 (47%), Gaps = 28/401 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S+GC++N Y++ M+ + G + IV NTC + AE V +IR Sbjct: 5 VVSFGCRLNTYEAEVMKREASAAGL----GAGERPAIVFNTCAV---TAEAVRQARQQIR 57 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLER 142 + +E D +VV GC AQ E V+ V+G ++Y LP+ Sbjct: 58 KAR----RENPDARIVVTGCAAQTEPARFAEMIE-VDAVIGNDEKLKAESYAALPDFGVA 112 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A +V D E + ++G R R A + IQ GCD CTFC++PY RG Sbjct: 113 AEEKVKVNDIMSVTETAGHMVDAIEG---RAR---AIVQIQNGCDHRCTFCIIPYGRGNS 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLV 261 S + VV++ ++L+ +G E+ L G ++ +W G L G L+ S L + L Sbjct: 167 RSVPMGAVVEQVKRLVASGYNEVVLSGVDMTSW-GADLPGAP-KLGKLIQSILKNVPDLP 224 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ + + LI+A +MP+LHL +Q+G D ILK M RRH + Sbjct: 225 RLRLSSIDSVEADEALIEAIASDPRVMPHLHLSLQAGDDMILKRMKRRHLRADSIAFCTE 284 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R RPDI +D I GFP ET+ F T+ LV++ G F +SPR GTP + M Q Sbjct: 285 MRRKRPDIVFGADLIAGFPTETEAMFENTLKLVEECGLTFLHVFPFSPREGTPAARM-PQ 343 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 ++++V R L+ +G +L+E+ G Sbjct: 344 LEKSVIKNRAARLRAAGENAFARHLTRQIGTQRSILVEREG 384 >gi|294102421|ref|YP_003554279.1| MiaB-like tRNA modifying enzyme [Aminobacterium colombiense DSM 12261] gi|293617401|gb|ADE57555.1| MiaB-like tRNA modifying enzyme [Aminobacterium colombiense DSM 12261] Length = 434 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 128/446 (28%), Positives = 218/446 (48%), Gaps = 32/446 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + + GC+ N ++ + M G E V + D VL TC + A +K Sbjct: 12 IMAMGCRSNQSEADSLASMLKRTGAEIVKA-PPYDAAVLITCTVTAIADKKSRQ------ 64 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L ++ + L+V GC AQ + +R V+++VG + +++P LL A KR Sbjct: 65 -LLRRLRRQSPEALLVATGCWAQKADPNLAQRLG-VDLLVGNRQKWQIPSLLNHALGEKR 122 Query: 149 -----VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +V D ++++ L + + AF+ IQ+GC+ FC++CV+P+ RG + Sbjct: 123 PLPLTIVRNDILHSEEWDHLFQFQPLLHSR----AFVKIQDGCNHFCSYCVIPFVRGEPV 178 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR L+ V++E R + D+G E+ L G ++ + G GE + +L+ I G+ R+ Sbjct: 179 SRPLNSVLEEVRSIADSGCTEVVLTGVHLGLY---GQFGE-VSLGELVRQAGAIPGVERI 234 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R+ + P ++D L+ A + P+LHLP+QSG D +L+ M R ++ EY ++R R Sbjct: 235 RFGSLEPFGINDELLSALAETPQFCPHLHLPLQSGDDTVLQRMRRGYSPLEYMASVERAR 294 Query: 324 S-VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + I IS+D +VGFPGE + F T+ + ++ + + F YS R GT ++ + + Sbjct: 295 HYLGSRIHISTDVLVGFPGEDERAFANTLSFMKEVAFGKVHVFPYSSREGTRAASFDDHL 354 Query: 383 DENVKAERLLCLQKKLREQQVSFNDAC---VGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 +V ER + K + + F + C VG+ I V IE E G G +P+ V Sbjct: 355 PRHVVQER---VHKVMEMGEQLFREYCSQWVGEEISVFIED-AAETGS-TGLTPFFVKAV 409 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465 + + + G IIK LYG Sbjct: 410 V-PQMVSPGRIIKTLTRSYDSEQLYG 434 >gi|170289680|ref|YP_001736496.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum OPF8] gi|170173760|gb|ACB06813.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum OPF8] Length = 432 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 131/447 (29%), Positives = 228/447 (51%), Gaps = 37/447 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF++++YGC MN DS ME + G RVN +AD+IVLNTC+++ +++ + Sbjct: 2 RFYIETYGCSMNRSDSQIMEKLLEEAGLIRVNDPREADVIVLNTCNVKTPTEQRM---IQ 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R R L +VVAGC+A+++G ++ V+V P+ ++ E + A Sbjct: 59 RARELSKY-------APLVVAGCMAKSQGYKL---KDFSKVLVAPREIDKIVEAVNSAIA 108 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G+R ++ DK L + + I EGC CT+C+ RG S Sbjct: 109 GRRAEFLEWRFIDKSSYL-------RDPLELVGIIPIAEGCMGACTYCITRLARGGLTSF 161 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR- 264 ++ A + G E+ L ++ A+ G+ + GE ++L+ LS++ G R+R Sbjct: 162 PKRNILRLAEHFLRKGAVELWLTSEDTAAY-GRDM-GE--NLANLIMDLSDLPGDFRIRV 217 Query: 265 --YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 T S + LI A+ V + HLPVQSGSDR+L+ M R +T ++ ++D I Sbjct: 218 GMMTPSSALPILSELIGAYRSRKV-YKFFHLPVQSGSDRVLEDMGRNYTVDQFLSMVDFI 276 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R D++I++D IVGFP E ++DF +T+ +++++ K+ R GT ++M + Sbjct: 277 RKELSDVSIATDIIVGFPTEDEEDFESTLAILERLKPDVVNVSKFGARPGTKAASMRKLP 336 Query: 383 DENV--KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 D V +++ + L ++++E+ N+ +G+ +EVL+ + G EKG GR+ + V L Sbjct: 337 DAIVSRRSKEVNELVERIKEE---VNERYLGRELEVLVSEKG-EKG-FQGRTNSYKPVAL 391 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGEL 467 + +G V I D + + L GE+ Sbjct: 392 --REVKLGHFYLVEIVDFRANYLIGEV 416 >gi|152990825|ref|YP_001356547.1| tRNA modifying enzyme [Nitratiruptor sp. SB155-2] gi|151422686|dbj|BAF70190.1| tRNA modifying enzyme [Nitratiruptor sp. SB155-2] Length = 410 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 124/421 (29%), Positives = 211/421 (50%), Gaps = 41/421 (9%) Query: 26 RFFVKSYGCQMNVYDSL----RMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + F K++GC+ N++D+ +++D +Q E DAD++V+N+C + A V Sbjct: 2 KVFFKTFGCRTNLFDTQVMMSKLKDFTITQNEE------DADIVVVNSCTVTNGADSSVR 55 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 +++ RI+ G+ + + GC A +GEE+ + ++ V G R+ +LL+ Sbjct: 56 NYINRIQK---------GNKKIYLTGCGAFTKGEELFEKKKVIGVF-GHSEKERINDLLK 105 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + +F + D DK +IV + R AF+ IQEGCD C++C++PY RG Sbjct: 106 KEQFFQL---GDLESVDK----TIVSEFIGKSR---AFIKIQEGCDFRCSYCIIPYVRGN 155 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S S ++++ +KL NG E L G NV ++ GK D + + LL ++ I+G+ Sbjct: 156 ARSMDESLILEQIQKLASNGFGEFILTGTNVGSY-GKDKD---TSLAKLLKKIAMIRGVR 211 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R + P ++D K D + +LH+ +Q SD +L+ MNRR+ E Q+ + Sbjct: 212 RIRLGSIEPIQITDEF-KEILDEPWMAKHLHIALQHTSDTMLEIMNRRNRVKEDLQLFEE 270 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I S AI +DFIVG PGE++ F + + F YS R GTP ++M Sbjct: 271 IAS--HGYAIGTDFIVGHPGESEAIFEEAYENLKLFPLTHIHLFTYSKRDGTPSASMKPH 328 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V NV ER +Q+ ++++ F + VL+E G+++G G + V + Sbjct: 329 VLGNVAKERYKKIQELVKQKNFDFRKKQSD--LYVLVE--GEKRGHYFGYDQFYNPVFIE 384 Query: 442 S 442 S Sbjct: 385 S 385 >gi|312115373|ref|YP_004012969.1| MiaB-like tRNA modifying enzyme YliG [Rhodomicrobium vannielii ATCC 17100] gi|311220502|gb|ADP71870.1| MiaB-like tRNA modifying enzyme YliG [Rhodomicrobium vannielii ATCC 17100] Length = 448 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 133/464 (28%), Positives = 204/464 (43%), Gaps = 46/464 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GY D AD++V+NTC + A + Sbjct: 13 APKVGFV-SLGCAKALVDSERILTRLRAEGYVISPDYDGADVVVVNTCGFLDSAKAESLD 71 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +N R V+V GC E I P V V GP Y + + Sbjct: 72 AIGEAMA-ENGR--------VIVTGCFG-VEDRRIRDSFPGVLAVTGPHQYDAVVNAIHA 121 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D + G A+L I EGC C+FC++P RG Sbjct: 122 AAPAPHAPFLDL----------VPRAGLRLTPPHYAYLKISEGCHNRCSFCIIPQLRGDL 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 SR + V+ EA L++ G E+ ++ Q+ +A WRG + K ++L Sbjct: 172 ASRPAADVLAEAEALVEGGAKELLVISQDTSAYGLDLKYTASDWRGSPV---KARLTELC 228 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L + VRL Y +P + A G + +PYL +P Q S +LK+M R Sbjct: 229 DALGSLGAWVRLHYVYPYPHVDELLPLMAEGKI---LPYLDIPFQHASLSVLKAMRRPAN 285 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + + I R R PD+ + S FIVGFPGET++DF +D + + + FKY Sbjct: 286 QEKTLETIRRWREAVPDLGLRSTFIVGFPGETEEDFAVLLDWLREAKLTRVGCFKYENVE 345 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 G P + QV E+VKAER L + RE + VG+ I+V+I++ ++ GR Sbjct: 346 GAPSRALDGQVPEDVKAERFARLMEVQREVSAAVLAGQVGKTIDVIIDEVDEDGA--TGR 403 Query: 432 SPW----LQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELVV 469 PW + VL ++ + GD+++ I + L+ E V Sbjct: 404 GPWDAPEIDGSVLFEDAGDMEPGDMVRATIIEADDYDLWAEPVA 447 >gi|333029245|ref|ZP_08457306.1| MiaB-like tRNA modifying enzyme [Bacteroides coprosuis DSM 18011] gi|332739842|gb|EGJ70324.1| MiaB-like tRNA modifying enzyme [Bacteroides coprosuis DSM 18011] Length = 438 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 111/393 (28%), Positives = 195/393 (49%), Gaps = 22/393 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + G + AD+ ++NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTFGKILREYGVRTARKNEIADICIINTCSVTEMADKKCRQAIKRMH-- 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +E +VV GC AQ + +EI V++V+G + + L K+ Sbjct: 74 -----REHPGAFIVVTGCYAQLKPDEITEIEG-VDIVLGSEQKKDFIKFL--GNLEKK-- 123 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D + K + +R FL +Q+GCD FCT+C +P+ RG + S+ + Sbjct: 124 DGAQAYTTKLTDIKTFSPSCSRGNRTRFFLKVQDGCDYFCTYCTIPFARGFSRNGSIESI 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++A++ +G EI + G N + GK + TF DL+ L E++G+ R R ++ P Sbjct: 184 VNQAKQAARDGGKEIVITGVNTGDF-GKTTNE---TFIDLVKLLDEVEGIERFRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I+ MP+ H+P+QSGSD +LK M+RR+ + +++I+++ P Sbjct: 240 NLLTDEIIEFVAQSKRFMPHFHIPLQSGSDDVLKLMHRRYDTALFAHKVEKIKALVPHAF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV---DENVK 387 I D IVG GET F ++D ++ + Q F YS R GT + +V +++ + Sbjct: 300 IGVDVIVGTRGETQTFFDKSLDFIESLDITQLHVFSYSERPGTMALKIDHEVSPQEKHER 359 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 ++RLL + K E +F + +GQ + VL EK Sbjct: 360 SQRLLAISDKKTE---AFYEQFIGQEMPVLFEK 389 >gi|150403330|ref|YP_001330624.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C7] gi|150034360|gb|ABR66473.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C7] Length = 425 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 128/456 (28%), Positives = 234/456 (51%), Gaps = 46/456 (10%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++ YGC +N D+ +++ + +E +++DD+D+IV+NTC +R++ ++ S + Sbjct: 2 KIYIEGYGCTLNTADTEIIKNSVNEFEEFELADNVDDSDIIVINTCIVRQETEHRMISRI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP-QTYYR-------- 135 ++L D VVVAGC+A+A ++I + +V++ P + Y Sbjct: 62 EYFKSL---------DKKVVVAGCMAKALPKKI---KNLADVLIMPREAQYSGIILKDNL 109 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 L E E+ + ++ + ++ +K +++S +G+ L I EGC CT+C+V Sbjct: 110 LKECSEKYNEYNQNLNFEDNLNEKIKKVS--------SQGLITALPICEGCLGSCTYCIV 161 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 RG +S +V +A +L+ G + + Q+ + GLD K S+L+ +S Sbjct: 162 KRARGNLVSYDRDLIVKKAEELVKTGTKCLLVTAQDTACY---GLDN-KDNLSNLIDDIS 217 Query: 256 EIKGLVRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 EI +R H + + D LI++ V+ +LHLP+QSG D++LK MNR +T Sbjct: 218 EIPEKFAMRIGMMHAKFAEPILDELIESFKSEKVV-KFLHLPIQSGDDQVLKDMNRNYTV 276 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 EY ++D +S ++ ++D IVGFP ET++ F T+++V KI + KYS R Sbjct: 277 DEYISVLDEFKSKIKNLNFTTDVIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKY 336 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 T + +L+QVD ++ ER L + RE N +G+ E+L+ K+ +G + Sbjct: 337 TKAA-VLKQVDTKIRKERSEILNELRRELSYENNKRHIGETFEILVTKNN------LGVT 389 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++V+ IG+ + +IT K L G+L+ Sbjct: 390 NNCKNVIFEEPAQ-IGEFKRAKITGAKTFGLSGKLL 424 >gi|330835295|ref|YP_004410023.1| RNA modification protein [Metallosphaera cuprina Ar-4] gi|329567434|gb|AEB95539.1| RNA modification protein [Metallosphaera cuprina Ar-4] Length = 418 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 128/448 (28%), Positives = 228/448 (50%), Gaps = 36/448 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + + ++YGC +N D+ M + + +E V +++ AD++V+NTC +R + EK+ Sbjct: 2 KVYFETYGCALNKGDTYSMMSLLRERNHEIVETLEGADVVVINTCAVRMETEEKMKK--- 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIR L + K +V+AGC+ A+ ++ + ++GPQ+ + +++E Sbjct: 59 RIRELSKTGKK------LVIAGCLTGAQ-PGLVSSLSPSSSMIGPQSISDIVKVVES--- 108 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +RV+ D R + DG + + + I++GC C FC+ R S Sbjct: 109 NERVISLDSKTPSILPR--VFDG-------LISVIPIEDGCAGNCNFCITKLARRNLRSY 159 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 L +V+ +++I G EI L GQ+ + GLD G K T D++ ++ ++G +R Sbjct: 160 PLRNIVETVKRMISQGAKEIELTGQDTAVY---GLDMGGKVTLPDVVKEVASLEGDFMIR 216 Query: 265 YTTSHPRDMS----DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 P +M+ D +++A + V + H+PVQSG+D++L+ MNR++T E+R I+ Sbjct: 217 VGMMTP-EMAMRHLDSILEAWENPKVY-KFFHIPVQSGNDKVLREMNRKYTVDEFRAIVK 274 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR + I++D IVG PGE D F T++L+ ++ + + YS R T S+ML Sbjct: 275 EIRKKFRLVNITTDIIVGHPGEDDSAFEDTLNLMKELRFERIHIAMYSIRPNT-RSSMLA 333 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 QV +K ERL E + +G+ + VL + GK+ ++GR+ V+L Sbjct: 334 QVPGPIKKERLKRAVSLYEELSREVHKEYLGRQMRVLALERGKDD-TIIGRTINYIPVIL 392 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + +G+ V+I D L GE+V Sbjct: 393 S--DAVLGNWYDVKIVDSSFFDLRGEIV 418 >gi|332228849|ref|XP_003263603.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1 [Nomascus leucogenys] Length = 536 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 123/454 (27%), Positives = 215/454 (47%), Gaps = 35/454 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 64 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 120 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K +V+AGCV QA+ + + ++G Q R+ E++E Sbjct: 121 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 171 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V +D RL + +D RK + ++I GC CT+C + RG Sbjct: 172 KGHSVRLLGQK-KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 230 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257 S + ++VD A++ GVCEI L ++ A+ G+ + LL+ L E+ Sbjct: 231 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPTLLWKLVEVIPEGA 286 Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G+ Y H +M+ L + +LH+PVQS SD +L M R + + Sbjct: 287 MLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMEMKREYCVAD 341 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +++++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ PR GTP Sbjct: 342 FKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 401 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 + M EQV VK +R L + S D +G+ +VL+ + + V + + Sbjct: 402 AAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQF 458 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V++ +G +++V I + + G+ V Sbjct: 459 YEQVLVPKNPAFMGKMVEVDIHESGKHFMKGQPV 492 >gi|311259791|ref|XP_003128247.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like [Sus scrofa] Length = 578 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 124/456 (27%), Positives = 219/456 (48%), Gaps = 39/456 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 63 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 119 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K +V+AGCV QA+ + + ++G Q R+ E++E Sbjct: 120 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V +D +RL + +D RK + ++I GC CT+C + RG Sbjct: 171 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257 S + ++VD A++ GVCEI L ++ A+ G+ + + LL+ L E+ Sbjct: 230 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TSLPALLWKLVEVIPEGA 285 Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G+ Y H +M+ L + +LH+PVQS SD +L M R + + Sbjct: 286 MLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDTVLMDMKREYCVAD 340 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +++++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ PR GTP Sbjct: 341 FKRVVDFLKDKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 400 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS 432 + M EQV VK +R L + S+N D +G+ +VL+ + + V + Sbjct: 401 AAKM-EQVPAQVKKQRTKDLSRVFH----SYNPYDHKIGERQQVLVTEESFDSKFYVAHN 455 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + V++ +G +++V I + + G+ V Sbjct: 456 RFYEQVLVPKNPTFMGKMVEVDIYESGKHFMKGQPV 491 >gi|288927530|ref|ZP_06421377.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 317 str. F0108] gi|288330364|gb|EFC68948.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 317 str. F0108] Length = 431 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 126/452 (27%), Positives = 216/452 (47%), Gaps = 46/452 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS + F + GY V+ + +++V+NTC E A E+ + + Sbjct: 10 TMGCSKNLVDSELLMKQFEANGYHCVHDSKKPNGEIVVINTCGFIESAKEESINTI---- 65 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE G L + V GC++Q +E+ + P V+ G Y L + L GK Sbjct: 66 -LEFAQAKEEGRLKQLYVMGCLSQRYQKELEQEIPQVDKFYGKFNYKNLLKDL-----GK 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIE 202 V+ N R +T A+L I EGCD+ C +C +P G Sbjct: 120 GVI-----------------ASCNGTRSITTPRHYAYLKISEGCDRSCAYCAIPLITGKH 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++++E R L+ GV E ++ Q + + G LDG++ +DL+ +++IKG+ Sbjct: 163 VSRPKEEILEEVRSLVSQGVKEFQIIAQELTYY-GVDLDGQR-QITDLISEMADIKGVEW 220 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R ++P L++ + + Y+ + +Q SD +L M+R T + ++I RI Sbjct: 221 IRLHYAYPNQFPHSLLQVIKNKPNVCKYIDIALQHISDNMLTRMHRHVTKAQTMELIKRI 280 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 R P I + + +VGFPGET+DDF +D V + + +F YS GT + E Sbjct: 281 REEIPGIHLRTTLMVGFPGETEDDFNELLDFVKWARFERMGAFAYSEEEGTYSAKHYEDD 340 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW------L 435 + + VK RL L ++ VG+ + V+I++ KE +GR+ W Sbjct: 341 IPDEVKQRRLDQLMALQQDISAEVEAQKVGKTLRVIIDR--KEGDYYIGRTEWSSPEVDP 398 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 + ++ + +G VRITD + LYGE+ Sbjct: 399 EVLIPATVKLRVGSFYNVRITDSEEFDLYGEI 430 >gi|288927648|ref|ZP_06421495.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 317 str. F0108] gi|288330482|gb|EFC69066.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 317 str. F0108] Length = 446 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 125/434 (28%), Positives = 205/434 (47%), Gaps = 25/434 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ M G N + AD+ ++NTC + E A K + R+ Sbjct: 16 TLGCKLNFSETSTFGQMLQDMGVRTANEGEPADICLINTCSVTEVADHKCRQIIHRM--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARF-GK 147 ++E VVV GC AQ E E++ S I V++V+G L + L A G+ Sbjct: 73 ----VRENPGAFVVVTGCYAQLESEKV---SAIEGVDLVLGSNEKANLIQYLNDAWADGQ 125 Query: 148 R--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 R + +S+ K + +R FL +Q+GCD FCT+C +P+ RG + Sbjct: 126 RGKALHRHFSMNTK--DIKTFAPSCSRGNRTRYFLKVQDGCDYFCTYCTIPFARGFSRNP 183 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S++ +V +A ++G EI L G N+ ++G G + F DL+ +L +++G+ R R Sbjct: 184 SIASLVQQAHDAANDGGKEIVLTGVNIGEFKGGGNE----RFIDLVKALDQVEGIQRFRI 239 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ P ++D LI MP+ H+P+QSGSD +LK M RR+ + + I+ Sbjct: 240 SSIEPNLLTDELIDYCASSRAFMPHFHIPLQSGSDEVLKLMQRRYDTALFAHKVQLIKQR 299 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ I D +VG GE F D + + +Q F YS R GT + V++ Sbjct: 300 IPNAFIGVDVMVGSRGEEPAYFEECYDFLKSLDISQLHVFPYSERPGTAALRIPYVVNDA 359 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN---S 442 K R L + E+ +F + +G VL EK K K + G +P V L + Sbjct: 360 EKRRRSKLLLELSDEKLETFYASQIGSQSLVLFEKAAKGKA-MHGFTPNYVRVELPASLA 418 Query: 443 KNHNIGDIIKVRIT 456 K+ ++ VR+T Sbjct: 419 KDEFDNQLLPVRLT 432 >gi|329113598|ref|ZP_08242378.1| Putative methylthiotransferase [Acetobacter pomorum DM001] gi|326697120|gb|EGE48781.1| Putative methylthiotransferase [Acetobacter pomorum DM001] Length = 414 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 119/439 (27%), Positives = 201/439 (45%), Gaps = 57/439 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N ++S M + S+D+ +I++NTC + +A + + R Sbjct: 8 TFGCRLNTWESEVMRN--------HAASLDN--VIIVNTCAVTGEAERQARQAIRRAH-- 55 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---------ELLE 141 +E D +VV GC AQ + P+++ LP E L+ Sbjct: 56 -----RENPDARIVVTGCAAQ----------------INPESWSDLPGVARVLGNEEKLK 94 Query: 142 RARFGKRVVDTDYSVED----KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 + + +V D K +V R R AF+ +Q+GC+ CTFC++P+ Sbjct: 95 AESWSAAALSQPLAVSDIMAAKETAAHLVTEFAGRTR---AFVQVQQGCNHRCTFCIIPF 151 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG S + VV++ R L+ +G E+ L G ++ +W G+ L G+ L + Sbjct: 152 GRGPSRSVPVGAVVEQVRALVQSGYREVVLTGVDMTSW-GEDLPGKPVLGQLCRRVLRLV 210 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 L R+R ++ P ++ + + + + MPYLHL +Q+GSD ILK M RRH + + Sbjct: 211 PELERMRLSSVDPVEIDEDIWQLLAEEPRFMPYLHLSLQAGSDLILKRMKRRHLVADAAR 270 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +++R RS+RPDI I +D I GFP E + F T + + + F YS R GTP + Sbjct: 271 VVERARSLRPDIGIGADIIAGFPTEDESLFEETRNFLAQQALPYLHVFPYSERPGTPAAR 330 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 M V + R L++ + ++ +GQ + VL+E G S Sbjct: 331 M-RAVPVPERKARAAQLREVGAVSAARYYESLIGQPLRVLMET------PTTGHSEQFAP 383 Query: 438 VVLNSKNHNIGDIIKVRIT 456 V L +G+II ++ T Sbjct: 384 VRLAQGEAEVGEIITLQST 402 >gi|308497879|ref|XP_003111126.1| hypothetical protein CRE_03881 [Caenorhabditis remanei] gi|308240674|gb|EFO84626.1| hypothetical protein CRE_03881 [Caenorhabditis remanei] Length = 560 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 125/453 (27%), Positives = 223/453 (49%), Gaps = 41/453 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 V Q+ +V+++GC N DS M + GY+ + + AD+ +LN+C ++ + ++ Sbjct: 45 VGQKVWVRTWGCSHNTSDSEYMAGLLQQAGYDVLKEGEAADVWILNSCTVKTPSEQQA-- 102 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLE 141 NL ++G +++AGCV+QA E + NV +VG + R+ E++E Sbjct: 103 -----NNLVVQGQEQGKK--IIMAGCVSQAAPSEPW----LQNVSIVGVKQIDRIVEVVE 151 Query: 142 RARFGKRVVDTDYSVEDKFERL-------SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 G +V+ T RL +++ RK + L+I GC CT+C Sbjct: 152 ETLKGNKVLPTILRTSRLHVRLLTRNRPDALLSLPKMRKNELIEVLSISTGCLNNCTYCK 211 Query: 195 VPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 RG +S L +V++AR D GV E+ L +++ AW G+ ++ DLL + Sbjct: 212 TKMARGDLVSYPLEDLVEQARAAFHDEGVKELWLTSEDLGAW-GRDIN---LVLPDLLNA 267 Query: 254 LSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 L ++ G+ Y H ++++ L + + +LH+PVQS SD +L Sbjct: 268 LVKVIPDGSMMRLGMTNPPYILDHLEEIAEIL-----NHPKVYAFLHIPVQSASDAVLTD 322 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R ++ + QI D + P+I I++D I+ FP ET +DF +M+LV K + F Sbjct: 323 MKREYSRRHFEQIADYMIKHVPNIYIATDMILAFPTETLEDFEESMELVRKYKFPSLFIN 382 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 +Y PR GTP + L+++D ++A + +L F + +G+I VL+ + +K Sbjct: 383 QYYPRSGTPAAR-LKKID-TIEARKRTAAMSELFRSYTRFTEDRIGEIHNVLVTEVAADK 440 Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDV 458 VG + + +++ ++ +G+ I+VRIT V Sbjct: 441 LHGVGHNKSYEQILVPLEHCKMGEWIEVRITSV 473 >gi|262372668|ref|ZP_06065947.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter junii SH205] gi|262312693|gb|EEY93778.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter junii SH205] Length = 447 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 133/464 (28%), Positives = 216/464 (46%), Gaps = 44/464 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GY+ + D ADL+V+NTC E A ++ Sbjct: 4 PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + +N R V+V GC+ + E ++I + P V V G Y + E + Sbjct: 63 IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + F L + + G A+L I EGC+ CTFC++P RG + Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGVRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V+DEA L GV E+ ++ Q+ +A W G+ + K F D+ Sbjct: 165 SRPVGSVLDEAAALKRAGVKEVLVISQDTSAYGVDTKYKLDFWNGQPV---KTKFYDMCE 221 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +L ++ VRL Y +P + + A G ++PYL +P Q S RILK M R + Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGK---ILPYLDIPFQHASPRILKLMKRPAHS 278 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + + R P++ I S F+VGFPGET++DF+ +D + + + F YSP G Sbjct: 279 ENTLERLKLWREKCPELVIRSTFVVGFPGETEEDFQILLDWLKEAQLDRVGCFTYSPVEG 338 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 +++ + V E +K ER + +E + +GQ + VL++ E V RS Sbjct: 339 ATANDLPDHVPEEIKQERYERFMEVQQEISAAKLQKRIGQKMTVLVDSLEDEFPVAVARS 398 Query: 433 ----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 P + V ++ GD+++V ITD L+ +L+ Sbjct: 399 YADAPEIDGNVFVEDIDKSVIKAGDLLEVEITDADEYDLFAKLI 442 >gi|163743347|ref|ZP_02150727.1| MiaB-like tRNA modifying enzyme [Phaeobacter gallaeciensis 2.10] gi|161383341|gb|EDQ07730.1| MiaB-like tRNA modifying enzyme [Phaeobacter gallaeciensis 2.10] Length = 421 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 118/397 (29%), Positives = 192/397 (48%), Gaps = 31/397 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ G + + +V+NTC + +A K + ++R Sbjct: 9 TLGCRLNAYETEAMKELSQQAGLQ--------NAVVVNTCAVTAEAVRKARQEIRKLR-- 58 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL---PELLER 142 +E D ++V GC AQ E E + V+ + QT+ ++ P+ + Sbjct: 59 -----RENPDAPIIVTGCAAQTEPETFAAMDEVTQVIGNTEKMQAQTWQQIAKGPDFIGA 113 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K VD SV + L +DG R R A++ +Q GCD CTFC++PY RG Sbjct: 114 TE--KVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNS 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S VVD+ ++L+D G E+ L G ++ +W G L ++ L + L R Sbjct: 167 RSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPATPKLGDLVMRILKLVPDLPR 225 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ D L++A LMP+LHL +Q G D ILK M RRH + + + Sbjct: 226 LRISSIDSIEVDDNLMQAIATEPRLMPHLHLSLQHGDDLILKRMARRHLRDDAIRFCEEA 285 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RP++ +D I GFP ETD F ++ LV F YS R GTP + + QV Sbjct: 286 RKLRPEMTFGADIIAGFPTETDAHFENSLKLVSDCDLTWLHVFPYSKREGTPAARIPSQV 345 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 + ++ ER L+ Q + A VG+ ++L+E Sbjct: 346 NGSLIRERAARLRAAGDAQVQTHLTAAVGKAHQILME 382 >gi|296157787|ref|ZP_06840621.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. Ch1-1] gi|295892033|gb|EFG71817.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. Ch1-1] Length = 461 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 135/481 (28%), Positives = 221/481 (45%), Gaps = 67/481 (13%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 12 APKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLD 70 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPE 138 +G N +N + V+V GC+ A G ++ P V V GP + L E Sbjct: 71 AIGEALN-ENGK--------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGP---HALGE 118 Query: 139 LLERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 +++ V T D F L G R A+L I EGC+ CTFC++P Sbjct: 119 VMQH-------VHTHLPKPHDPFVDLVPAAGVKLTPRHY-AYLKISEGCNHRCTFCIIPS 170 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246 RG +SR ++ V+ EA L +GV E+ ++ Q+ +A W GK + K Sbjct: 171 MRGDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTR 227 Query: 247 FSDLLYSLSEIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPVQ 296 +DL+ +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 228 MTDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPFKGH-----VLPYLDVPFQ 282 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 +LK M R A + + + + R + PD+ I S FI GFPGET++ F+ +D + + Sbjct: 283 HAHPEVLKRMKRPANAEKVMERVKKWREMCPDLTIRSTFIAGFPGETEEQFQTLLDFIRE 342 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416 + F YSP G + + + + V+ ER + E VG+ ++V Sbjct: 343 AELDRVGCFAYSPVQGATANELDGALPDEVREERRARFMEVAEEVSAKRIAKKVGKTLKV 402 Query: 417 LIEKHGKEKGKLVGRSP----------WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 L+++ + G +GR+ ++ V SK + +GD + V+IT L+GE Sbjct: 403 LVDEINADGG--IGRTAADAPEIDGVVYIAPAVKASKRYKVGDFVSVKITGADGHDLWGE 460 Query: 467 L 467 + Sbjct: 461 V 461 >gi|221134267|ref|ZP_03560572.1| MiaB-like tRNA modifying enzyme YliG [Glaciecola sp. HTCC2999] Length = 481 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 129/428 (30%), Positives = 207/428 (48%), Gaps = 50/428 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY+ V++ +DA+L+++NTC + A E+ +G Sbjct: 51 SLGCPKNLVDSERILTQLRTEGYDVVSTYNDAELVIVNTCGFIDSAVEESLDTIGEA--- 107 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + E G V+V GC+ E +EI P V + GP Y + E + Sbjct: 108 ----LAENGK--VIVTGCLGVKE-DEIREVHPNVLSITGPHAYESVVEQVHE-------- 152 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + + L + D G A+L I EGC+ CTFC++P RG +SR + +V Sbjct: 153 HLPKPAHNPYLNL-VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEV 211 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 ++EA++L GV E+ ++ Q+ +A W G + K + L L + Sbjct: 212 LNEAKRLKAAGVNELLVISQDTSAYGVDVKHKTDFWDGMPV---KTHMNQLCEQLGTLDM 268 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P D LI VL PYL +P Q S RIL+ M R +A + I Sbjct: 269 WVRLHYVYPYPH--VDDLIPLMTQGKVL-PYLDIPFQHASKRILRLMKRPGSA---DRTI 322 Query: 320 DRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 DRI+ R P++ I S FIVGFPGET+ +F + ++ +A FKYSP G + Sbjct: 323 DRIKKWREICPELIIRSTFIVGFPGETEAEFEELLAFLEAAQIDRAGCFKYSPVEGATAN 382 Query: 377 NMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGR 431 + + + E+VK ERL + +Q ++ Q++ +G+ +V+I++ E G+ Sbjct: 383 ALPDHIPEDVKEERLARFMAVQSQISAQRLQTR---IGKEYQVVIDEVTSEGAVGRCFAD 439 Query: 432 SPWLQSVV 439 +P + VV Sbjct: 440 APEVDGVV 447 >gi|167648821|ref|YP_001686484.1| MiaB-like tRNA modifying enzyme [Caulobacter sp. K31] gi|167351251|gb|ABZ73986.1| MiaB-like tRNA modifying enzyme [Caulobacter sp. K31] Length = 449 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 130/446 (29%), Positives = 207/446 (46%), Gaps = 51/446 (11%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P V ++GC++N Y+S + + G AD +V NTC + +A + Sbjct: 30 PDGVDVVTFGCRLNAYESEAIRARASADGL--------ADAVVFNTCAVTNEAVRQARQA 81 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + + R +E D ++V GC AQ + P +++V+G LL+ + Sbjct: 82 IRKAR-------RERPDARLIVTGCAAQID-PAAFAAMPEIDLVLGNAEKAAPGALLDTS 133 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 RV V+ S+++ L + G +R R A++ +Q GCD CTFC++P+ RG Sbjct: 134 ---TRVRVNDIMSIKETAGHL--IAGLKDRAR---AYVEVQNGCDHRCTFCIIPFGRGNS 185 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S +VV++ R+L G E+ L G +V +W G L G+ + L + L R Sbjct: 186 RSAPAGEVVEQVRRLSAEGYNEVVLTGVDVTSW-GTDLPGQPTLGQLVGRILKLVPDLPR 244 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ L+K LMPYLHL +Q+G D ILK M RRH + +++ + Sbjct: 245 LRLSSIDAAEIDPDLLKLLETELRLMPYLHLSLQAGDDMILKRMKRRHNRADALKLVAEV 304 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R VRPD A +D I GFP E++ F T+ LV++ G A F YS R GTP + M Sbjct: 305 RRVRPDTAFGADLIAGFPTESEGAFENTLKLVEEAGLAFLHVFPYSARPGTPAARMPPVK 364 Query: 383 DENVK--AERL-----LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-------- 427 +K A RL L++ L+ Q VG+ + L+E+ G + + Sbjct: 365 GGVIKDRARRLREAGQAGLERHLQRQ--------VGRTLSGLVEREGVARAEDFTEIAFD 416 Query: 428 --LVGRSPWLQSVVLNSKNHNIGDII 451 L G +P Q H+ +I Sbjct: 417 PALGGAAPQGQIAAFRVTGHDGSRVI 442 >gi|71737831|ref|YP_275930.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487030|ref|ZP_05641071.1| putative tRNA modifying protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625986|ref|ZP_06458940.1| putative tRNA modifying protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651498|ref|ZP_06482841.1| putative tRNA modifying protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298488227|ref|ZP_07006262.1| methylthiotransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|123747566|sp|Q48FA7|RIMO_PSE14 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|71558384|gb|AAZ37595.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157235|gb|EFH98320.1| methylthiotransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323072|gb|EFW79161.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. glycinea str. B076] gi|330868590|gb|EGH03299.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|331009328|gb|EGH89384.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 447 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 146/474 (30%), Positives = 234/474 (49%), Gaps = 65/474 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 10 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ + I P V V GPQ Y Sbjct: 69 IGE-------AIKENGK--VIVTGCMG-VDANVIRDVHPSVLSVTGPQQY---------- 108 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250 RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A +R DG+ K ++L Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 225 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L + VRL Y +P + A G ++PYL +P Q S +ILK M R Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280 Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 A+E + + RI++ R PD+ I S FIVGFPGET++DF+ +D + + + F+Y Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339 Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 SP G P +N+L+ V ++VK +R + Q+ + ++ +G+ IEVLI++ Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394 Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++G VGR +P + V GD I R+TD L+ E++ Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLEEGSTVQPGDKIMCRVTDADEYDLWAEML 447 >gi|257063746|ref|YP_003143418.1| MiaB-like tRNA modifying enzyme [Slackia heliotrinireducens DSM 20476] gi|256791399|gb|ACV22069.1| MiaB-like tRNA modifying enzyme [Slackia heliotrinireducens DSM 20476] Length = 409 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 118/377 (31%), Positives = 182/377 (48%), Gaps = 42/377 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF V + GC++N +S + G E V ++DADL+++NTC + +A +K + Sbjct: 5 RFHVVNLGCRVNRVESDSFAASLVAHGGESV-PVEDADLVIVNTCTVTGEAEKKTRKAVR 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R+ ++E VVV GC A + P TY + + Sbjct: 64 RV-------LRENASGTVVVTGCAA----------------AIDPDTYGNMDSRVVVVPK 100 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGY------NRKRGVTAFLT-----IQEGCDKFCTFCV 194 G ++V + +++ +GG + R F T +Q+GC+ CTFC+ Sbjct: 101 GSMAAYVSHAVSGE-SPVAVAEGGAVGSLFGDEFRMGEDFPTRVGIKVQDGCNNACTFCI 159 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 V RG SR VV EA + GV EI L G N+ A+R + D LL L Sbjct: 160 VHVARGRAWSRPYKDVVAEAGEYARRGVREIVLTGINLGAYRTEDAD-----LVRLLDGL 214 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAY 313 E R R ++ P +SD I D + +LHLP+QSGS ++LK M R +TA Sbjct: 215 LEAAPNTRFRLSSVEPHTLSDDFIGLMAASDGRICRHLHLPLQSGSTKVLKEMARPYTAQ 274 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 ++ ++DR+ P +++S+D IVGFPGET+ DF+ T D+ +++ F+YS R GT Sbjct: 275 DFMGLVDRMYEAVPSLSLSTDVIVGFPGETERDFQDTCDVARACRFSKMHIFRYSMRAGT 334 Query: 374 PGSNMLEQVDENVKAER 390 P + +Q+ VKAER Sbjct: 335 PAALRSDQISPEVKAER 351 >gi|114605648|ref|XP_001171161.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1 isoform 3 [Pan troglodytes] gi|114605650|ref|XP_001171227.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1 isoform 5 [Pan troglodytes] Length = 579 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 123/454 (27%), Positives = 215/454 (47%), Gaps = 35/454 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 64 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 120 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K +V+AGCV QA+ + + ++G Q R+ E++E Sbjct: 121 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 171 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V +D RL + +D RK + ++I GC CT+C + RG Sbjct: 172 KGHSVRLLGQK-KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 230 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257 S + ++VD A++ GVCEI L ++ A+ G+ + LL+ L E+ Sbjct: 231 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPTLLWKLVEVIPEGA 286 Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G+ Y H +M+ L + +LH+PVQS SD +L M R + + Sbjct: 287 MLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMEMKREYCVAD 341 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +++++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ PR GTP Sbjct: 342 FKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 401 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 + M EQV VK +R L + S D +G+ +VL+ + + V + + Sbjct: 402 AAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQF 458 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V++ +G +++V I + + G+ V Sbjct: 459 YEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 492 >gi|46579310|ref|YP_010118.1| RNA modification protein [Desulfovibrio vulgaris str. Hildenborough] gi|46448724|gb|AAS95377.1| RNA modification enzyme, MiaB-family [Desulfovibrio vulgaris str. Hildenborough] gi|311233137|gb|ADP85991.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris RCH1] Length = 458 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 122/432 (28%), Positives = 201/432 (46%), Gaps = 53/432 (12%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F ++GC++N Y++ + + + +G+ V++ + AD+I++NTC + +A V + R Sbjct: 8 FHAATFGCKVNQYETQSLREAWLRRGFTEVDTPEGADVILVNTCAVTARAVSDVRRAIAR 67 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR----------- 135 + + +VV GC AQ EE +V VV PQ Sbjct: 68 LHRAAPA-------AGIVVTGCAAQVLREEFAGLPGVVAVV--PQEAKATLAAYDPAAAI 118 Query: 136 LPELLERARFGKR------------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183 +P + A G VV SV F R+ G+ R R V + +Q Sbjct: 119 MPPVSTHAAHGDAATAQASSATSGDVVPAQASVFPDF-RIE----GFRRARPV---VKVQ 170 Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243 +GC CT+C+VP TRG SR +VV E R+L+D G E+ L G N+ + G+ L G Sbjct: 171 DGCSHRCTYCIVPLTRGASRSREPGEVVAELRRLLDAGFREVMLSGVNLRLY-GRDLSGA 229 Query: 244 KCTFSDLLYSL-----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 F DLL + E G RLR ++ P + + G ++ P LHL +QSG Sbjct: 230 G-DFWDLLQRVERELAPEWAGRARLRISSLEPGQLGVHALDVLGGSRLVCPQLHLSLQSG 288 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIR---SVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355 S +L+ M R H Y ++D +R P + +D ++GFPGE++D F T+D V Sbjct: 289 SPDVLRRMGRGH--YSPAPLLDFLRDLGGTWPVFGLGADILMGFPGESEDAFAETLDFVR 346 Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG-QII 414 + A F YS R GT +++ E + + ++ R ++ + +++ F + G + Sbjct: 347 ALPLTYAHVFPYSRRPGTVAASLPEHLPQEIRKARAAAVRDVVAQKRAVFAERLAGLPAL 406 Query: 415 EVLIEKHGKEKG 426 V+++ G KG Sbjct: 407 SVVLDGAGARKG 418 >gi|89067277|ref|ZP_01154790.1| MiaB-like tRNA modifying enzyme [Oceanicola granulosus HTCC2516] gi|89046846|gb|EAR52900.1| MiaB-like tRNA modifying enzyme [Oceanicola granulosus HTCC2516] Length = 418 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 110/355 (30%), Positives = 175/355 (49%), Gaps = 31/355 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+ + G +D +V+NTC + +A K + R+R Sbjct: 9 TMGCRLNAYETEAMKALAEQAGL--------SDALVVNTCAVTAEAVRKAKKEIRRLR-- 58 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLERA 143 +E + ++V GC AQ E E P V ++G P+T+ + P+L+ Sbjct: 59 -----RENPEAPLIVTGCAAQTE-PETFAAMPEVTRIIGNTEKMQPETWAAMAPDLIGET 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + VD SV + L +DG R R A++ +Q GCD CTFC++P+ RG Sbjct: 113 E--RVAVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPFGRGNSR 165 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S VV++ ++L+D G E+ L G ++ +W G L + ++ L + L RL Sbjct: 166 SVPAGVVVEQIKRLVDRGYNEVVLTGVDLTSW-GGDLPAQPRLGDLVMRILRLVPDLPRL 224 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ + D L+ A LMP+LHL +Q G D ILK M RRH + + + R Sbjct: 225 RISSIDSIEADDNLMLAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFTEEAR 284 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +RPD+ +D I GFP ET+ F ++ LV++ F YSPR GTP + M Sbjct: 285 RLRPDMTFGADIIAGFPTETEAHFANSLRLVEECDLTWLHVFPYSPRAGTPAARM 339 >gi|260554742|ref|ZP_05826963.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii ATCC 19606] gi|260411284|gb|EEX04581.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter baumannii ATCC 19606] Length = 447 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 133/467 (28%), Positives = 220/467 (47%), Gaps = 50/467 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GY+ + D ADL+V+NTC E A ++ Sbjct: 4 PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + +N R V+V GC+ + E ++I + P V V G Y + E + Sbjct: 63 IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + F L + + G A+L I EGC+ CTFC++P RG + Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V++EA L GV EI ++ Q+ +A W G+ + K F D+ Sbjct: 165 SRPVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 221 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +L ++ VRL Y +P + + + G + +PYL +P Q S R+LK M R + Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMSQGKI---LPYLDIPFQHASPRVLKLMKRPAHS 278 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I R PD+ I S F+VGFPGET++DF+ +D + + + F YSP G Sbjct: 279 ENTLEKIKLWREKCPDLVIRSTFVVGFPGETEEDFQILLDWLVEAQLDRVGCFTYSPVEG 338 Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 +++ + V E +K ER + +Q+++ ++ +GQ + VL++ E V Sbjct: 339 ATANDLPDHVPEEIKQERYERFMQVQQQISAAKLQKR---IGQTMTVLVDSLEDEYPVAV 395 Query: 430 GRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 RS P + V ++ GD+++V ITD L+ +L+ Sbjct: 396 ARSYADAPEIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 442 >gi|260427433|ref|ZP_05781412.1| conserved hypothetical protein [Citreicella sp. SE45] gi|260421925|gb|EEX15176.1| conserved hypothetical protein [Citreicella sp. SE45] Length = 417 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 119/390 (30%), Positives = 185/390 (47%), Gaps = 46/390 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+ + G D +++NTC + ++A K + R+R Sbjct: 8 TLGCRLNAYETEAMKALAEEAGV--------GDAVIINTCAVTQEAVRKARQEIRRLR-- 57 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144 +E D V+V GC AQ + E V+ V+G P+T+ L R+ Sbjct: 58 -----RENPDARVIVTGCAAQIDPESFAAMDE-VDAVIGNSEKMSPETWKGL-----RSD 106 Query: 145 F----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 F K V+ SV + L +DG R R A++ +Q GCD CTFC++PY RG Sbjct: 107 FIGDTEKVQVNDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRG 161 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S VVD+ ++L+ G E+ L G ++ +W G L G DL+ + I + Sbjct: 162 NSRSVPAGVVVDQIKRLVQKGFNEVVLTGVDLTSW-GADLPGTP-RLGDLVMRILRITDV 219 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ + + L+ A LMP+LHL +Q G D ILK M RRH + + + Sbjct: 220 PRLRISSIDSIEADENLMLAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFTE 279 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R +RPDI +D I GFP ET+ F ++ LV+ F YS R GTP + + Sbjct: 280 EARRLRPDITFGADIIAGFPTETEAHFENSLKLVEDCHLTWLHVFPYSSRPGTPAAKIPN 339 Query: 381 QVDENVKAERL--------LCLQKKLREQQ 402 +V+ + ER + +Q+ L QQ Sbjct: 340 KVNGTIIKERAARLREAGDVAVQRHLAAQQ 369 >gi|93277076|ref|NP_060244.2| CDK5 regulatory subunit-associated protein 1-like 1 [Homo sapiens] gi|74747199|sp|Q5VV42|CDKAL_HUMAN RecName: Full=CDK5 regulatory subunit-associated protein 1-like 1 gi|55665181|emb|CAH72474.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens] gi|55665277|emb|CAH73074.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens] gi|55665283|emb|CAH72467.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens] gi|55665292|emb|CAH73706.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens] gi|56202708|emb|CAI19768.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens] gi|56202711|emb|CAI21023.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens] gi|56202969|emb|CAI20280.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens] gi|56205108|emb|CAI21687.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens] gi|111309189|gb|AAI21021.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens] gi|111309398|gb|AAI21022.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens] gi|119575830|gb|EAW55426.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_b [Homo sapiens] gi|158256902|dbj|BAF84424.1| unnamed protein product [Homo sapiens] Length = 579 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 123/454 (27%), Positives = 215/454 (47%), Gaps = 35/454 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 64 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 120 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K +V+AGCV QA+ + + ++G Q R+ E++E Sbjct: 121 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 171 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V +D RL + +D RK + ++I GC CT+C + RG Sbjct: 172 KGHSVRLLGQK-KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 230 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257 S + ++VD A++ GVCEI L ++ A+ G+ + LL+ L E+ Sbjct: 231 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPTLLWKLVEVIPEGA 286 Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G+ Y H +M+ L + +LH+PVQS SD +L M R + + Sbjct: 287 MLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMEMKREYCVAD 341 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +++++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ PR GTP Sbjct: 342 FKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 401 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 + M EQV VK +R L + S D +G+ +VL+ + + V + + Sbjct: 402 AAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQF 458 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V++ +G +++V I + + G+ V Sbjct: 459 YEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 492 >gi|313682137|ref|YP_004059875.1| miab-like tRNA modifying enzyme [Sulfuricurvum kujiense DSM 16994] gi|313154997|gb|ADR33675.1| MiaB-like tRNA modifying enzyme [Sulfuricurvum kujiense DSM 16994] Length = 415 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 121/435 (27%), Positives = 213/435 (48%), Gaps = 31/435 (7%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ +F K++GC+ NV+DS M M YE +AD++++N+C + A V + Sbjct: 3 PKVYF-KTFGCRTNVFDSQVM--MSALSDYEVTEIEGEADIVIVNSCTVTNGADVSVRGY 59 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + N K+G L + GC A +GE + I V GP ++ L+ + Sbjct: 60 I-------NQMDKQGKKLFLT--GCGAHTKGESLFGAGKIQGVF-GPSEKMKINTLISQE 109 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D +Y ++D +IVD + R AF+ IQEGC+ C++C++P+ RG Sbjct: 110 SRFYEIGDLNY-IDD-----AIVDEFVGKSR---AFIKIQEGCNFRCSYCIIPFVRGDAR 160 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S ++++++ ++L NG E L G NV ++ GE ++L+ +S I+G+ R+ Sbjct: 161 SMDEAKILEQIQRLASNGFGEFVLTGTNVGSYG----QGEGRNIAELMKKMSLIRGVRRI 216 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R + P +++ + + L +LH+ +Q SD +L+ MNRR+ ++ + Sbjct: 217 RVGSLEPIQINESFREILSE-PWLERHLHIAIQHSSDEMLRLMNRRNRHKSDEELFGMLH 275 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S A+ +DFIVG PGE+D +R M+ + + F YS R GTP ++M +V+ Sbjct: 276 S--KGFALGTDFIVGHPGESDAIWREAMENIRSLHLTHIHPFTYSKRDGTPSASMKPEVN 333 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 V ++R+ L + +F A +EVLIE E + +G + VV+ S Sbjct: 334 GAVSSQRMAELNALIESNNYTFRKAMKAVPLEVLIES--GEDNRYIGYDQFYNKVVIESN 391 Query: 444 NHNIGDIIKVRITDV 458 GD + + +V Sbjct: 392 EDISGDWMTLEDYEV 406 >gi|302879309|ref|YP_003847873.1| MiaB-like tRNA modifying enzyme YliG [Gallionella capsiferriformans ES-2] gi|302582098|gb|ADL56109.1| MiaB-like tRNA modifying enzyme YliG [Gallionella capsiferriformans ES-2] Length = 438 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 134/464 (28%), Positives = 223/464 (48%), Gaps = 48/464 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC DS + ++GY ++ DADL+V+NTC + A E+ Sbjct: 5 IPKVGFV-SLGCPKATVDSEHILTRLRAEGYIISDTYKDADLVVVNTCGFIDSAVEESLD 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + E G V+V GC+ A+G+ + + P V V GP + E + + Sbjct: 64 AIGE-------ALAENGK--VIVTGCLG-AKGDVVKQAHPKVLAVTGPHATDEVMEAVHQ 113 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 TD + G A+L I EGC+ CTFC++P RG Sbjct: 114 HLPKPHDPYTDL----------VPPQGIRLTPKHYAYLKISEGCNHRCTFCIIPSLRGDL 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR + V+ EA L + GV E+ ++ Q+ +A W G+ L K ++L Sbjct: 164 VSRPVGDVMAEAESLANAGVRELLVISQDTSAYGVDVKYRTGFWGGRPL---KTRMTELA 220 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L + VRL Y +P + A G + +PYL +P Q + RILK M R Sbjct: 221 VALGTLGVWVRLHYVYPYPHVDEVIPLMAQGKI---LPYLDIPFQHANQRILKLMKRPGN 277 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I + R + P++ + S FIVGFPGET+++F +D +++ + +F YSP Sbjct: 278 SDNVLARIKQWREICPELVLRSTFIVGFPGETEEEFEELLDFIEEAQLDRVGAFAYSPVE 337 Query: 372 GTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426 G +++ + V V+ E RL+ LQ+++ E+++ +G+ + VL+++ +E Sbjct: 338 GATANDLPDHVPPEVQQERLARLMWLQEEISEEKLKRK---IGKTLTVLVDEVDEEGAIA 394 Query: 427 KLVGRSPWLQS-VVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 + +P + V +N H N+GD ++V ITD L+GELV Sbjct: 395 RSFADAPEIDGQVYINDGQHLNVGDRVEVLITDSDTHDLWGELV 438 >gi|114605652|ref|XP_001171194.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1 isoform 4 [Pan troglodytes] Length = 536 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 123/454 (27%), Positives = 215/454 (47%), Gaps = 35/454 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 64 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 120 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K +V+AGCV QA+ + + ++G Q R+ E++E Sbjct: 121 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 171 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V +D RL + +D RK + ++I GC CT+C + RG Sbjct: 172 KGHSVRLLGQK-KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 230 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257 S + ++VD A++ GVCEI L ++ A+ G+ + LL+ L E+ Sbjct: 231 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPTLLWKLVEVIPEGA 286 Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G+ Y H +M+ L + +LH+PVQS SD +L M R + + Sbjct: 287 MLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMEMKREYCVAD 341 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +++++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ PR GTP Sbjct: 342 FKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 401 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 + M EQV VK +R L + S D +G+ +VL+ + + V + + Sbjct: 402 AAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQF 458 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V++ +G +++V I + + G+ V Sbjct: 459 YEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 492 >gi|91783479|ref|YP_558685.1| hypothetical protein Bxe_A2337 [Burkholderia xenovorans LB400] gi|123168508|sp|Q13Z56|RIMO_BURXL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|91687433|gb|ABE30633.1| SSU ribosomal protein S12P methylthiotransferase [Burkholderia xenovorans LB400] Length = 461 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 133/479 (27%), Positives = 219/479 (45%), Gaps = 65/479 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 13 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 71 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G N +N + V+V GC+ A G ++ P V V GP + L E+ Sbjct: 72 IGEALN-ENGK--------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGP---HALGEV 119 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 ++ D F L G R A+L I EGC+ CTFC++P R Sbjct: 120 MQHVHMHLP------KPHDPFVDLVPAAGVKLTPRHY-AYLKISEGCNHRCTFCIIPSMR 172 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR ++ V+ EA L +GV E+ ++ Q+ +A W GK + K + Sbjct: 173 GDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 229 Query: 249 DLLYSLSEIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPVQSG 298 DL+ +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 230 DLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPFKGH-----VLPYLDVPFQHA 284 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + + + + R + PD+ I S FI GFPGET++ F+ +D + + Sbjct: 285 HPEVLKRMKRPANAEKVMERVKKWREMCPDLTIRSTFIAGFPGETEEQFQTLLDFIREAE 344 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YSP G + + + + V+ ER + E VG+ ++VL+ Sbjct: 345 LDRVGCFAYSPVEGATANELDGALPDEVREERRARFMEVAEEVSAKRIAKKVGKTLKVLV 404 Query: 419 EKHGKEKGKLVGRSP----------WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ + G +GR+ ++ V SK + +GD + V+IT L+GE+ Sbjct: 405 DEINADGG--IGRTAADAPEIDGVVYIAPAVKASKRYKVGDFVSVKITGADGHDLWGEV 461 >gi|298291698|ref|YP_003693637.1| MiaB-like tRNA modifying enzyme YliG [Starkeya novella DSM 506] gi|296928209|gb|ADH89018.1| MiaB-like tRNA modifying enzyme YliG [Starkeya novella DSM 506] Length = 452 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 141/463 (30%), Positives = 218/463 (47%), Gaps = 46/463 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ S+GYE + ADL+++NTC + A + + Sbjct: 17 APRISFV-SLGCPKALVDSERIITSLRSEGYELSRRHEGADLVIVNTCGFLDSAKAESLA 75 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G +KE G V+V GC+ AE E I P V V GPQ Y + + + Sbjct: 76 AIG-------DALKENGK--VIVTGCMG-AEPEHIRDVHPGVLAVTGPQQYESVLAAVHQ 125 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A V + D F L G R A+L I EGC+ CTFC++P RG Sbjct: 126 A------VPPSH---DPFVDLVPPQGIKLTPRHY-AYLKISEGCNNRCTFCIIPKLRGDL 175 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-------RGKGLDGE-KCTFSDLLYSL 254 +SR + V+ EA +L+ GV E+ ++ Q+ +A+ K D E + F DL L Sbjct: 176 VSRPAADVLREAERLVAAGVKELLVISQDTSAYGIDVKYAASKWKDREVRARFLDLAREL 235 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 + VR+ Y +P D +I D V++PYL +P Q S +LK M R + Sbjct: 236 GTLGAWVRMHYVYPYPH--VDEVIGLMSD-GVILPYLDIPFQHASPTVLKRMKRPAAQEK 292 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 I + R PD+ + S FIVGFPGET+ +F +D +D+ + FKY P G P Sbjct: 293 TLARIQKWRQDCPDLTLRSTFIVGFPGETEAEFEELIDFLDEAELDRVGCFKYEPVAGAP 352 Query: 375 GSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 +++ + + VK E R + +Q+++ +++ VG +V+I+ G VGR Sbjct: 353 ANDLGAAIPDEVKEERWKRFMEVQQRVSARRLKRK---VGTRQQVIIDSVGPTVA--VGR 407 Query: 432 S----PWLQSV--VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 S P + V + + +G+I+ V+I L+G V Sbjct: 408 SKADAPEIDGSVHVASRRPLRVGEIVTVKIERADAYDLHGMAV 450 >gi|71908364|ref|YP_285951.1| hypothetical protein Daro_2751 [Dechloromonas aromatica RCB] gi|123774323|sp|Q47CF0|RIMO_DECAR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|71847985|gb|AAZ47481.1| SSU ribosomal protein S12P methylthiotransferase [Dechloromonas aromatica RCB] Length = 440 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 131/465 (28%), Positives = 221/465 (47%), Gaps = 50/465 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP FV S GC D+ R+ ++GYE S D++DL+++NTC + A E+ Sbjct: 7 VPTVGFV-SLGCPKASSDAERILTKLRAEGYEISPSYDNSDLVIVNTCGFIDAAVEESLD 65 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N +N + V+V GC+ A+G+ + P V V GP + Sbjct: 66 AIGEALN-ENGK--------VIVTGCLG-AKGDIVQTTHPAVLAVTGPHAADEV------ 109 Query: 143 ARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +V T D + L + G A+L I EGC+ CTFC++P RG Sbjct: 110 ----MGIVHTHLPKPHDPYSDL-VPPQGVRLTPDHFAYLKISEGCNHSCTFCIIPSLRGP 164 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +SR + V+ EA L GV EI ++ Q+ +A W GK + K +L Sbjct: 165 LVSRPVGDVLAEAENLARAGVKEILVISQDTSAYGVDLKYRTAFWGGKPV---KSRLKEL 221 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L+ + VRL Y +P + A G + +PYL +P Q S +ILK+M R Sbjct: 222 CEALASLGIWVRLHYVYPYPSVDDVIPLMAEGKI---LPYLDVPFQHASPKILKAMKRPA 278 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 +A + I + R + P+I I S FI GFPGET++DF + ++ + +F YSP Sbjct: 279 SAENTLERIAKWREICPEIVIRSTFITGFPGETEEDFDQLIQFLEDAKLDRVGAFAYSPV 338 Query: 371 LGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425 G + + E + E+V+ +R L+ +Q+ + +++ A + +I+VL+++ +E Sbjct: 339 DGAKANELGELLPEDVREDRRRWLMQVQEDISADKLA---AKIDTVIQVLVDEVDEEGTI 395 Query: 426 GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + +P + +V + + GD ++V++ D LY ++V Sbjct: 396 ARSKADAPEIDGLVYLDGHFDAQPGDFLQVKVIDADHHDLYAQVV 440 >gi|7020375|dbj|BAA91102.1| unnamed protein product [Homo sapiens] Length = 579 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 123/454 (27%), Positives = 215/454 (47%), Gaps = 35/454 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 64 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 120 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K +V+AGCV QA+ + + ++G Q R+ E++E Sbjct: 121 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 171 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V +D RL + +D RK + ++I GC CT+C + RG Sbjct: 172 KGHSVRLLGQK-KDNGRRLGGARLDLPKIRKNPLIEIISISTGCLNACTYCKTKHARGNL 230 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257 S + ++VD A++ GVCEI L ++ A+ G+ + LL+ L E+ Sbjct: 231 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPTLLWKLVEVIPEGA 286 Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G+ Y H +M+ L + +LH+PVQS SD +L M R + + Sbjct: 287 MLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMEMKREYCVAD 341 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +++++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ PR GTP Sbjct: 342 FKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 401 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 + M EQV VK +R L + S D +G+ +VL+ + + V + + Sbjct: 402 AAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQF 458 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V++ +G +++V I + + G+ V Sbjct: 459 YEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 492 >gi|49475606|ref|YP_033647.1| hypothetical protein BH08410 [Bartonella henselae str. Houston-1] gi|81648389|sp|Q6G5E0|RIMO_BARHE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|49238413|emb|CAF27640.1| hypothetical protein BH08410 [Bartonella henselae str. Houston-1] Length = 437 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 139/460 (30%), Positives = 215/460 (46%), Gaps = 47/460 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ S+GYE ADL+++NTC F Sbjct: 4 PRISFV-SLGCPKALVDSERIITSLRSEGYEISRKHQGADLVIVNTC-----------GF 51 Query: 84 LGRIRNLKNSRIKEG--GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L RN + I E + V+V GC+ A+ + I + P V + GPQ Y + + + Sbjct: 52 LDSARNESLANIDEALKKNGKVIVTGCLG-ADPDVIRQVYPNVLAITGPQAYESVIQAVH 110 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A V D F L G R A+L I EGC C+FC++P RG Sbjct: 111 TA---------IPPVHDPFIDLVPPQGIRLTPRHY-AYLKISEGCSNRCSFCIIPTLRGN 160 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +SR +S V+ EA KL+ GV E+ ++ Q+ +A W+ + + K F DL Sbjct: 161 LMSRPISDVLREAEKLVQAGVKELLVISQDTSAYGIDLKYLETPWKDRTV---KTKFFDL 217 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L + +R+ Y +P D +I+ + +L PYL +P Q S +L++M R Sbjct: 218 CRELGNMGIWIRMHYVYPYPH--VDDVIEFMAEKKIL-PYLDIPFQHASPTVLRNMKRPA 274 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + + I++ R + PD+ + S FIVGFPGET +DF ++ +D++ +A FKY Sbjct: 275 LVKKINRRIEKWRIICPDLTLRSTFIVGFPGETHEDFNILLEWLDEVKIERAGCFKYEAV 334 Query: 371 LGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK-EKGK 427 G +++ LE + E VK R K ++ VG+ ++VLI E GK KG+ Sbjct: 335 KGAVANDLGLESIPEEVKENRWHRFMAKQQKISTHLLKKKVGKRLQVLIDESQGKIAKGR 394 Query: 428 LVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYG 465 +P + VV S +G+ + V+I LYG Sbjct: 395 SQYDAPEIDGVVHISSRRPLRVGEFVTVKIERSDAYDLYG 434 >gi|319899510|ref|YP_004159607.1| hypothetical protein BARCL_1386 [Bartonella clarridgeiae 73] gi|319403478|emb|CBI77058.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 427 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 112/366 (30%), Positives = 186/366 (50%), Gaps = 21/366 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S + S G +++ D A I+ NTC + +A + + + R Sbjct: 7 TFGCRLNSYESEIIRKESTSAGLDKLK--DGA--IIFNTCAVTVEAVRQAKQAIRKAR-- 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEI-LRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 +E + ++V GC AQ EG++ L + V++++G + +R FG Sbjct: 61 -----RENPNARIIVTGCAAQTEGKKFSLMKE--VDLILGNEEKLHAHSYCQRPDFGINH 113 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 D V + E I N G T AF+ +Q GCD CTFC++PY+RG S + Sbjct: 114 -DEKIRVNNIMEVNKIAPHMINALEGRTRAFVQVQNGCDHRCTFCIIPYSRGPSRSVPMG 172 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRYTT 267 ++++ ++ + NG+ EI L G ++ ++ G L G K T L+ + L + L RLR ++ Sbjct: 173 IIIEQIKQFVGNGIQEIVLTGVDLTSY-GPDLPG-KITLGKLVSTILHHVPDLPRLRLSS 230 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 + LI +MPYLHL +Q+G + ILK M RRH Q +R+ RP Sbjct: 231 IDSIEADQELINLLAYEKRIMPYLHLSLQAGDNMILKRMKRRHLRENAIQFCQNLRAKRP 290 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + +D I GFP ET++ F+ ++ L+++ G F +SPR GTP + M + E +K Sbjct: 291 TMVYGADLIAGFPTETEEMFQNSLTLINECGLTYLHVFPFSPREGTPAARMPQINRETIK 350 Query: 388 --AERL 391 AE+L Sbjct: 351 IRAEKL 356 >gi|221212797|ref|ZP_03585773.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|221167010|gb|EED99480.1| conserved hypothetical protein [Burkholderia multivorans CGD1] Length = 453 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 133/477 (27%), Positives = 217/477 (45%), Gaps = 61/477 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 5 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G ++ P V V GP + + Sbjct: 64 IGEA-------LTENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQA 114 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + K D F L + G A+L I EGC+ CTFC++P R Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPPAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K + Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221 Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298 DL+ +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + + + + R + PD+ I S FI GFPGET++ F +D + + Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YSP G + + + ++V+ ER + E VG+ ++VLI Sbjct: 337 LDRVGCFAYSPVEGASANELDGALPDDVREERRARFMEVAEEVSARRIARKVGKTLKVLI 396 Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 397 DEVSDEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453 >gi|146279012|ref|YP_001169171.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides ATCC 17025] gi|145557253|gb|ABP71866.1| MiaB-like tRNA modifying enzyme [Rhodobacter sphaeroides ATCC 17025] Length = 425 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 113/357 (31%), Positives = 179/357 (50%), Gaps = 34/357 (9%) Query: 30 KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 + GC++N Y++ M+++ + G +D+A +V+NTC + +A K + R+R Sbjct: 7 STLGCRLNAYETEAMKELASAAG------VDNA--VVVNTCAVTAEAVRKAKQEIRRLR- 57 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLER 142 +E ++V GC AQ E P V+ V+G T+ + P+L+ Sbjct: 58 ------RENPGATIIVTGCAAQTE-PATFSAMPEVDRVIGNTEKMQASTWAAMAPDLIGE 110 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +RV VD SV + L +DG + R R A++ +Q GCD CTFC++PY RG Sbjct: 111 T---ERVQVDDILSVRETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPYGRGN 161 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S VV++ R+L+D G E+ L G ++ +W G L + ++ L + L Sbjct: 162 SRSVPAGVVVEQIRRLVDRGFAEVVLTGVDLTSW-GADLPAQPRLGDLVMRILRLVPDLA 220 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ + + L+ A LMP+LHL +Q G D ILK M RRH + + + Sbjct: 221 RLRISSIDSIEADEALMGAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFCEE 280 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 R +RPDI +D I GFP E++ F ++ LV + G F +SPR GTP + M Sbjct: 281 ARRLRPDIVFGADIIAGFPTESEQAFENSLKLVGECGLTFLHVFPFSPRTGTPAARM 337 >gi|330985158|gb|EGH83261.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 443 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 143/467 (30%), Positives = 230/467 (49%), Gaps = 64/467 (13%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ +GYE V + +DAD++V+NTC + A + +G Sbjct: 12 SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEVIGE---- 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 IKE G V+V GC+ + I P V V GPQ Y ++VV Sbjct: 68 ---AIKENGK--VIVTGCMG-VDANVIRDVHPSVLSVTGPQQY-------------EQVV 108 Query: 151 DTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + V +D + +V G A+L I EGC+ C+FC++P RG +SR Sbjct: 109 NAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSR 168 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEI 257 + V+DEA++L+ +GV E+ ++ Q+ +A +R DG+ K ++L +L + Sbjct: 169 PVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTELCQALGSM 228 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 VRL Y +P + A G ++PYL +P Q S +ILK M R A+E + Sbjct: 229 GVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR--PAFEDKT 283 Query: 318 IIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + RI++ R PD+ I S FIVGFPGET++DF+ +D + + + F+YSP G P Sbjct: 284 LA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAP 342 Query: 375 GSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 +N+L+ V ++VK +R + Q+ + ++ +G+ IEVLI++ ++G V Sbjct: 343 -ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV-DDRGA-V 396 Query: 430 GR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468 GR +P + V GD I R+TD L+ E++ Sbjct: 397 GRCFFDAPEIDGNVFIGLEEGSTVQPGDKIMCRVTDADEYDLWAEML 443 >gi|169795680|ref|YP_001713473.1| hypothetical protein ABAYE1576 [Acinetobacter baumannii AYE] gi|215483167|ref|YP_002325374.1| RNA modification enzyme, MiaB family protein [Acinetobacter baumannii AB307-0294] gi|301512089|ref|ZP_07237326.1| ribosomal protein S12 methylthiotransferase [Acinetobacter baumannii AB058] gi|332852498|ref|ZP_08434237.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter baumannii 6013150] gi|332871298|ref|ZP_08439847.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter baumannii 6013113] gi|238065266|sp|B7H1U1|RIMO_ACIB3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065271|sp|B0V6E8|RIMO_ACIBY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|169148607|emb|CAM86473.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|213988942|gb|ACJ59241.1| RNA modification enzyme, MiaB family protein [Acinetobacter baumannii AB307-0294] gi|332729200|gb|EGJ60543.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter baumannii 6013150] gi|332731582|gb|EGJ62868.1| ribosomal protein S12 methylthiotransferase RimO [Acinetobacter baumannii 6013113] Length = 447 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 133/467 (28%), Positives = 220/467 (47%), Gaps = 50/467 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GY+ + D ADL+V+NTC E A ++ Sbjct: 4 PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + +N R V+V GC+ + E ++I + P V V G Y + E + Sbjct: 63 IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + F L + + G A+L I EGC+ CTFC++P RG + Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V++EA L GV EI ++ Q+ +A W G+ + K F D+ Sbjct: 165 SRPVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 221 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +L ++ VRL Y +P + + A G + +PYL +P Q S R+LK M R + Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGKI---LPYLDIPFQHASPRVLKLMKRPAHS 278 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I R P++ I S F+VGFPGET++DF+ +D + + + F YSP G Sbjct: 279 ENTLEKIKLWREKCPNLVIRSTFVVGFPGETEEDFQILLDWLVEAQLDRVGCFTYSPVEG 338 Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 +++ + V E +K ER + +Q+++ ++ +GQ + VL++ E V Sbjct: 339 ATANDLPDHVPEEIKQERYERFMQVQQQISAAKLQKR---IGQTMTVLVDSLEDEYPVAV 395 Query: 430 GRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 RS P + V ++ GD+++V ITD L+ +L+ Sbjct: 396 ARSYADAPEIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 442 >gi|171319694|ref|ZP_02908785.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ambifaria MEX-5] gi|171095074|gb|EDT40085.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ambifaria MEX-5] Length = 453 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 133/477 (27%), Positives = 218/477 (45%), Gaps = 61/477 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 5 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ + A G ++ P V V GP + + Sbjct: 64 IGEA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQA 114 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + K D F L + G A+L I EGC+ CTFC++P R Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K + Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221 Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298 DL+ +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 222 DLVAALGELAARYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + + + + R + PD+ I S FI GFPGET++ F +D + + Sbjct: 277 HPDVLKRMKRPANAEKVLERVQKWRELCPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YSP G + + + ++V+ ER + E VG+ ++VLI Sbjct: 337 LDRVGCFAYSPVEGATANELDGALPDDVREERRARFMEVAEEVSAKRIQRKVGKTLKVLI 396 Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 397 DEVSDEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453 >gi|297569860|ref|YP_003691204.1| MiaB-like tRNA modifying enzyme [Desulfurivibrio alkaliphilus AHT2] gi|296925775|gb|ADH86585.1| MiaB-like tRNA modifying enzyme [Desulfurivibrio alkaliphilus AHT2] Length = 470 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 129/440 (29%), Positives = 213/440 (48%), Gaps = 27/440 (6%) Query: 25 QRFFVKSYGCQMNVYDSLR-MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 +R V + GC++N Y++ + ++ + E V + A++ V+NTC + KA + Sbjct: 20 KRVAVTTLGCKVNQYETAAFLSELADCKEVEIVPFGEAAEVYVINTCAVTAKAGAQS--- 76 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 R L K GG LVV GC AQ +E+L + +VG L+ A Sbjct: 77 ----RQLIRRAAKRGGSRLVVT-GCYAQVAPQEVLELTARPLCIVGNSHK----NLVTEA 127 Query: 144 RFGKRVVDTDYSVED-----KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 D + + D + L + GG +R R V L +Q+GC + C++C+VP + Sbjct: 128 VLAASPCDLEMYLADMAGCREVAPLVVRRGG-SRTRAV---LKVQDGCSQRCSYCIVPIS 183 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEI 257 RG S + +V+D+A G E+ L G ++ + GLD + LL L Sbjct: 184 RGPSRSVTPERVLDQAEIYAGQGYREVVLTGIHLGHY---GLDLQPTLPLVGLLEKLLAR 240 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 + +R R ++ PR++S L++ L P+LH+P+QSG DRIL +MNR + ++ Sbjct: 241 RLPLRYRLSSLEPREVSPELLELVAAEAALQPHLHIPLQSGDDRILAAMNRPYRRQDFAA 300 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +++R V P AI D + GFPGE D F T+ L+ ++ + F YSPR GTP + Sbjct: 301 VVNRCAQVLPAAAIGVDVLAGFPGEDDAAFANTLALLKELPVSYLHVFPYSPRPGTPAAK 360 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQ 436 + +QV E VK R L+ R+++ +F + + VL+E ++ K L G + Sbjct: 361 LPDQVPEKVKQRRAARLRNLDRQKREAFYRRHLDTVRPVLVEGGDQDAAKALRGFTDNYI 420 Query: 437 SVVLNSKNHNIGDIIKVRIT 456 V L +I+VR++ Sbjct: 421 PVQLPDGAARGNQVIRVRLS 440 >gi|148553566|ref|YP_001261148.1| ribosomal protein S12 methylthiotransferase [Sphingomonas wittichii RW1] gi|238066606|sp|A5V3Z4|RIMO_SPHWW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|148498756|gb|ABQ67010.1| MiaB-like tRNA modifying enzyme YliG [Sphingomonas wittichii RW1] Length = 452 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 131/459 (28%), Positives = 208/459 (45%), Gaps = 43/459 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P + + S GC N+ DS R+ S GY AD++++NTC + A E+ Sbjct: 13 PPKIGMVSLGCPKNLVDSERILTKLRSDGYGLSPDYAGADVVLVNTCGFLDSAKEESLEA 72 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G I E G V+V GC+ E E I R P V + G Y E++ Sbjct: 73 IGEA-------IAENGR--VIVTGCMGD-EAEAIRARFPKVLAITGAHQYE---EVVGAV 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 V + Y L + Y+ +L I EGC+ C+FC++P RG + Sbjct: 120 HDAAPVPPSPYVDLVPEAGLKLTPRHYS-------YLKISEGCNHRCSFCIIPSIRGDLV 172 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-----------GE-KCTFSDLL 251 SR ++ EA KL+ G E+ ++ Q+ +A+ GLD GE + +DL Sbjct: 173 SRRPDAILREAEKLVAAGTRELLVISQDTSAY---GLDLRHKAFPLKGGGEVRAHMTDLA 229 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L ++ VRL Y +P + A G ++ PYL +P Q S +LK+M R Sbjct: 230 RELGKLGAWVRLHYVYPYPHVDHVIPLMAEG---LITPYLDIPFQHASPPVLKAMKRPAN 286 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + + I R++ PDIAI S F+VGFPGET++DF+ +D +D+ + +F++ P Sbjct: 287 EAKVLERIAGWRAICPDIAIRSTFVVGFPGETEEDFQYLLDWLDEAQLDRVGAFRFEPVA 346 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKL 428 G +++ V E VK ER + K + A VG+ ++V+I+ G G+ Sbjct: 347 GAAANDLPGAVPEEVKEERYARIMAKTAAISAAKLAAKVGRTLDVIIDAVDDEGGATGRS 406 Query: 429 VGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465 +P + V ++ G I+ V I D L+G Sbjct: 407 QADAPEIDGEVHLRDAGGLEPGAIVAVEIEDADEHDLFG 445 >gi|218886497|ref|YP_002435818.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757451|gb|ACL08350.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 462 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 134/461 (29%), Positives = 211/461 (45%), Gaps = 47/461 (10%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF + GC++N Y++ + + + ++G+ DAD++++N+C + +A V + R Sbjct: 6 FFALTLGCKINQYETEAVREAWLARGWREAADPADADVLLINSCAVTARAVADVRQAVAR 65 Query: 87 I-RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL----PEL-- 139 + R + RI VV GC AQ E+I P V+ VVG Q L PE Sbjct: 66 MHRAAPHGRI--------VVTGCAAQVLREDIAA-LPGVSDVVGQQAKVSLLRYDPEGGA 116 Query: 140 --LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 G D + + F I G+ R R V L +Q+GC CT+C+VP Sbjct: 117 AGAHEPDGGGDGGDDLAAGDTAFPAFRI--DGFTRSRPV---LKVQDGCSHRCTYCIVPL 171 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL--- 254 RG SR + + EAR+L+D G E+ + G N+ + G+ L G F DLL L Sbjct: 172 ARGAARSRDPREALAEARRLLDAGFRELIVSGVNLRQY-GRDLPGGGPDFWDLLAFLERE 230 Query: 255 --SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 + G RLR ++ P + + + + ++ P LHL +QSGS +L+ M R H Sbjct: 231 LAPQWAGRARLRISSLEPGQLGERALDVLAESRLVAPQLHLSLQSGSPGVLRRMGRGH-- 288 Query: 313 YEYRQIIDRIRS---VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 Y ++D +R V P + +D + GFPGE D +F T+D V + A F YS Sbjct: 289 YRPEPLLDFVRELAEVWPLFGLGADILTGFPGEADAEFGETLDFVGALPLTYAHVFPYSR 348 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 R GTP + M Q+ + VK R L+ + ++ +F + + +L+ G K V Sbjct: 349 RPGTPAAVMEGQLPQEVKKRRAAELRGAVAVKKATFLQRLLDE-PRLLVAPEGARGVKGV 407 Query: 430 -----------GRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459 GR P Q+ + GD++ VR V+ Sbjct: 408 CEYYAECRFTGGRRPAAQA-GQGGEQAGPGDLVAVRPLAVE 447 >gi|88800724|ref|ZP_01116282.1| 2-methylthioadenine synthetase [Reinekea sp. MED297] gi|88776500|gb|EAR07717.1| 2-methylthioadenine synthetase [Reinekea sp. MED297] Length = 382 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 109/349 (31%), Positives = 174/349 (49%), Gaps = 37/349 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS R+ ++GY V S ++AD++++NTC + A ++ +G N Sbjct: 28 SLGCPKNTVDSERIITQLRAEGYNIVPSYNNADVVIVNTCGFIDSAVQESLDTIGEALN- 86 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 KN + V+V GC+ E ++I P V V GP Y + K+V Sbjct: 87 KNGK--------VLVTGCLGAKE-DDIREVHPNVLAVTGPHAYDHV---------VKQVH 128 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + D F L + G A+L I EGC+ CTFC++P RG +SR +SQV Sbjct: 129 EVVPPKHDPFTSL-VPKAGVKLTPKHYAYLKISEGCNHRCTFCIIPSFRGDLVSRPISQV 187 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA L+++G E+ ++ Q+ +A W+G+ + K +L L ++ Sbjct: 188 LSEAESLVNHGTKELLVISQDTSAYGVDTKYREDFWKGRAV---KTRMKELCEELGQLDA 244 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VR+ Y +P D +I + + ++PYL +P Q S +LK+M R A + I Sbjct: 245 WVRMHYVYPYPH--VDDIIPLMAE-NRILPYLDIPFQHASPSVLKNMKRPAHAEKVLNRI 301 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + R + PDI + S FIVGFPGET+DDF+ +D +++ + +FKYS Sbjct: 302 HQWRDICPDITLRSTFIVGFPGETEDDFQMLLDFLEEAQLDRVGAFKYS 350 >gi|325282557|ref|YP_004255098.1| Ribosomal protein S12 methylthiotransferase rimO [Deinococcus proteolyticus MRP] gi|324314366|gb|ADY25481.1| Ribosomal protein S12 methylthiotransferase rimO [Deinococcus proteolyticus MRP] Length = 500 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 131/479 (27%), Positives = 222/479 (46%), Gaps = 55/479 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GYE + +DA +++NTC A E+ S +G + Sbjct: 21 SLGCPKALVDSERILTQLRAEGYEVAPNYEDAQAVIVNTCGFITPAIEESLSAIGEALDA 80 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG---------------PQTYYR 135 V+V GC+ + E+I+ R P V+ + G P Sbjct: 81 TGK---------VIVTGCLGE-RPEKIMERHPKVSAITGSEAVDDVMGHVRDLLPVNQDA 130 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTF 192 LL G R V +V + E+ D R A++ + EGC+ C F Sbjct: 131 FTGLLPVPAPGMRPVAAP-AVGPEREQTRHGDVFAPSVRLTPRHYAYVKVAEGCNHTCAF 189 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--K 244 C++P RG+++SR V+ EA +L+ G E+ ++ Q+ +A +R GE + Sbjct: 190 CIIPKLRGLQVSRDAGSVLYEAFRLVAGGTKELVVIAQDTSAYGVDIRYRESEFQGEQVR 249 Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 +DL L E+ VR+ Y +P + A G ++PYL +P+Q S +IL+ Sbjct: 250 AHLTDLAEKLGELGAWVRMHYVYPYPHVDRIVELMAQGK---ILPYLDVPLQHASPKILR 306 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 +M RR A + I R R + P++ I S FIVGFPGET++DF+ +D ++ + + Sbjct: 307 AM-RRPGAGKQLDTIRRWREICPELTIRSTFIVGFPGETEEDFQELLDFLEAAQLDRVGA 365 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 F YS + + V E VK ERL + + ++ VG++++V+I+++ + Sbjct: 366 FTYSEVPEADANALPGAVPEEVKEERLARFMEVAQRISMARLAQKVGRVMDVIIDEYNDD 425 Query: 425 KG-----KLVGRS----PWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGELVV 469 +G +L+GR+ P + V + +GDI++ RI D L+GE+V Sbjct: 426 EGDQPGTRLIGRTKGDAPGIDGQVYLYAGDFAGQIKVGDIVQARIEDSDEYDLFGEVVA 484 >gi|313674192|ref|YP_004052188.1| miab-like tRNA modifying enzyme [Marivirga tractuosa DSM 4126] gi|312940890|gb|ADR20080.1| MiaB-like tRNA modifying enzyme [Marivirga tractuosa DSM 4126] Length = 439 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 110/392 (28%), Positives = 192/392 (48%), Gaps = 17/392 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + MF ++GYE+V+ + D+ ++NTC + E A +K + + + Sbjct: 8 TLGCKLNFSETSSISRMFENRGYEKVDFQANPDIFIINTCSVTENADKKCKKVVKEAKKI 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFGKR 148 D V + GC AQ + +EI S I V+ V+G ++L + L+ F K+ Sbjct: 68 -------NPDAFVTIIGCYAQLKPKEI---SEIKGVDAVLGAAEKFQLIDKLDG--FTKK 115 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 D + + + ++ FL +Q+GC+ C FC +P RG S ++ Sbjct: 116 --DAPQVLASDIKEAKSFNNAFSINDRTRTFLKVQDGCNYHCAFCTIPLARGKSRSDTIE 173 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V A+++ V EI L G N + G K F DL+ L ++G+ R R ++ Sbjct: 174 NIVKSAKQIASEDVKEIVLTGVNTGDF-GIQEGKRKERFVDLVKELDNVEGIDRFRISSI 232 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P +++ +I+ +P+ H+P+QSGS+ IL+ M RR+ Y + +I+ + P Sbjct: 233 EPNLLTNEIIEFVSQSKRFVPHFHVPLQSGSNIILRKMRRRYLRELYEDRVAKIKQLMPQ 292 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I D IVGFPGETD++F T + ++ + F YS R T M E V V+ Sbjct: 293 CCIGVDVIVGFPGETDENFLETYHFLKELPVSYLHVFTYSERPNTDADEMDEVVPMKVRN 352 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 ER L+ +++ +F + + + VL EK Sbjct: 353 ERSKMLRSLSEKKKRAFYEENLDREEVVLFEK 384 >gi|332703256|ref|ZP_08423344.1| RNA modification enzyme, MiaB family [Desulfovibrio africanus str. Walvis Bay] gi|332553405|gb|EGJ50449.1| RNA modification enzyme, MiaB family [Desulfovibrio africanus str. Walvis Bay] Length = 445 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 121/407 (29%), Positives = 203/407 (49%), Gaps = 28/407 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F +++ GC++N Y+S + + + ++G+ V+ M A +++ N+C + A+ V + G+ Sbjct: 11 FAIRTLGCKINQYESQALREAWLARGWSEVD-MRRARVVLFNSCAV---TADAVRTLRGQ 66 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R + R+ + + +V+ GC AQ E+ + VV+ Q R L G Sbjct: 67 VRQVH--RVNQEAE--IVITGCAAQVLSAELADLVDMARVVLVDQP--RKAGLASYPDIG 120 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + F L I D + R R V L IQ+GC CT+C+VP RG SR Sbjct: 121 PALPKS------AFPPLCISD--FKRARPV---LKIQDGCSHGCTYCIVPQGRGPSRSRP 169 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK----GLVR 262 ++ ++ EAR+L+ +G EI L G N+ + G+ L + L + SE+ G R Sbjct: 170 MADILAEARRLLASGFREIILGGINLRHF-GRDLPDAPDLWDLLAFLDSELAPKWAGRAR 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDR 321 LR ++ P + + ++ P+LHL +QS S IL+SM R H A E + Sbjct: 229 LRLSSLDPAQLGGKALDTLAASRLVCPHLHLSLQSLSPEILRSMGRGHYAPEEIEGFLRE 288 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 + V P A+ +D +VGFPGETD F T+ +D++ A F YS R GT +NM Q Sbjct: 289 LEKVWPTFALGADLLVGFPGETDGHFEQTVTALDRLPLTYAHVFPYSKRPGTRAANMANQ 348 Query: 382 VDENVKAERLLCLQKKLREQQVSF-NDACVGQIIEVLIEKHGKEKGK 427 V K ER+ L+ +++ +F + + V++EK G++ G+ Sbjct: 349 VSTREKKERVGQLRALADKRKAAFMRHLLTREKLAVIMEKSGEKPGR 395 >gi|323436185|ref|ZP_01051257.2| MiaB-like tRNA modifying enzyme YliG [Dokdonia donghaensis MED134] gi|321496500|gb|EAQ38091.2| MiaB-like tRNA modifying enzyme YliG [Dokdonia donghaensis MED134] Length = 450 Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 135/459 (29%), Positives = 226/459 (49%), Gaps = 55/459 (11%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-----DADLIVLNTCHIREKAAEKVYSF 83 V + GC NVYDS + G + N MD D +++V+NTC + A E+ + Sbjct: 13 VVTLGCSKNVYDSEVL------MGQLKANEMDVAHEEDGNIVVINTCGFIDNAKEESVNT 66 Query: 84 LGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + L+ + KE GD+ V V GC+++ ++ + P V+ G LP LL Sbjct: 67 I-----LEYVKQKEEGDVDKVFVTGCLSERYKPDLQKEIPDVDQYFGTT---ELPGLL-- 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + DY E ER++ Y A+L I EGCD+ C+FC +P RG Sbjct: 117 -----KALGADYKHELIGERITTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGKH 164 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL- 260 S+S+ +V EA+KL NGV E+ L+ Q++ + GLD +K ++LL +L +++G+ Sbjct: 165 KSKSIEHLVVEAKKLAANGVTELILIAQDLTYY---GLDLYKKRNLAELLENLVKVEGIE 221 Query: 261 -VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +RL Y + P D+ D + + + YL +P+Q +D ILKSM R T + Sbjct: 222 WIRLHYAFPSGFPVDVLDVMKREPK----VCNYLDIPLQHIADPILKSMRRGTTMAKTNA 277 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +++R R P++ I + IVG+PGET++DF+ V + + F YS T N Sbjct: 278 LLERFRESVPEMTIRTTLIVGYPGETEEDFQTLKQWVKDQRFERLGCFTYSHEENTHAYN 337 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SP 433 + + V E+VK +R + + + N +G+ ++++++ KE +GR SP Sbjct: 338 LEDDVPEDVKMDRANQIMEIQSQISWELNQQKIGKEFKIVVDR--KEGNFFIGRTEFDSP 395 Query: 434 WLQSVVLNSKNH---NIGDIIKVRITDVKISTLYGELVV 469 + + VL GD V++T+ + LY E +V Sbjct: 396 DVDNEVLVDATKFYLKTGDYAMVKVTEAEDFDLYAEPLV 434 >gi|258543518|ref|YP_003188951.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus IFO 3283-01] gi|256634596|dbj|BAI00572.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus IFO 3283-01] gi|256637652|dbj|BAI03621.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus IFO 3283-03] gi|256640706|dbj|BAI06668.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus IFO 3283-07] gi|256643761|dbj|BAI09716.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus IFO 3283-22] gi|256646816|dbj|BAI12764.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus IFO 3283-26] gi|256649869|dbj|BAI15810.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus IFO 3283-32] gi|256652859|dbj|BAI18793.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655913|dbj|BAI21840.1| tRNA 2-methylthioadenosine synthase MiaB [Acetobacter pasteurianus IFO 3283-12] Length = 414 Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 121/451 (26%), Positives = 204/451 (45%), Gaps = 57/451 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N ++S M + S+D+ +I++NTC + +A + + R Sbjct: 8 TFGCRLNTWESEVMRN--------HAASLDN--VIIVNTCAVTGEAERQARQAIRRAH-- 55 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---------ELLE 141 +E D +VV GC AQ + P+++ LP E L+ Sbjct: 56 -----RENPDARIVVTGCAAQ----------------INPESWSDLPGVARVLGNEEKLK 94 Query: 142 RARFGKRVVDTDYSVED----KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 + + +V D K +V R R AF+ +Q+GC+ CTFC++P+ Sbjct: 95 AESWSASALSEPLAVSDIMAAKETAAHLVTEFAGRTR---AFVQVQQGCNHRCTFCIIPF 151 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG S + VV++ R L+ +G E+ L G ++ +W G+ L G+ L + Sbjct: 152 GRGPSRSVPVGAVVEQVRALVQSGYREVVLTGVDMTSW-GEDLPGKPVLGQLCRRVLRLV 210 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 L R+R ++ P ++ + + + + MPYLHL +Q+GSD ILK M RRH + + Sbjct: 211 PELERMRLSSVDPVEIDEDIWQLLAEEPRFMPYLHLSLQAGSDLILKRMKRRHLVADAAR 270 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +++R R +RPDI I +D I GFP E + F T + + F YS R GTP + Sbjct: 271 VVERARKLRPDIGIGADVIAGFPTEDESLFEETRSFLAQQALPYLHVFPYSERPGTPAAR 330 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 M V + R L++ + ++ VGQ + VL+E G S Sbjct: 331 M-RAVPVPERKARAAQLREVGAASAARYYESLVGQPLRVLMET------PTTGHSEQFAP 383 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V L +G+II ++ T + + L E + Sbjct: 384 VRLAQGEAEVGEIITLQPTMAESAGLVVERI 414 >gi|255320445|ref|ZP_05361626.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] gi|262378341|ref|ZP_06071498.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter radioresistens SH164] gi|255302417|gb|EET81653.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] gi|262299626|gb|EEY87538.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acinetobacter radioresistens SH164] Length = 447 Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 133/464 (28%), Positives = 217/464 (46%), Gaps = 44/464 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GY+ + D ADL+V+NTC E A ++ Sbjct: 4 PKVGFV-SLGCPKALVDSERILTQLKTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + +N R V+V GC+ + E ++I + P V V G Y + + + Sbjct: 63 IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYEDVMSAVHQY 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + F L + + G A+L I EGC+ CTFC++P RG + Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGVRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V++EA L GV EI ++ Q+ +A W G+ + K F D+ Sbjct: 165 SRPVGSVLEEAAALKRAGVREILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 221 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +L ++ VRL Y +P + + A G ++PYL +P Q S RILK M R + Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGK---ILPYLDIPFQHASPRILKLMKRPAHS 278 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + + R PD+ I S F+VGFPGET++DF+ ++ + + + F YSP G Sbjct: 279 ENTLERLKVWREKCPDLVIRSTFVVGFPGETEEDFQILLEWLKEAQLDRVGCFTYSPVEG 338 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 +++ + V E VK ER + +E + +GQ + VL++ +E V RS Sbjct: 339 ATANDLPDHVPEEVKQERYERFMQVQQEISAAKLQKRIGQTMTVLVDNLEEEFPVAVARS 398 Query: 433 ----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 P + V ++ GD+++V ITD L+ +L+ Sbjct: 399 YADAPEIDGNVFVEDIDKSQIKSGDLLEVEITDADEYDLFAKLI 442 >gi|327402650|ref|YP_004343488.1| 30S ribosomal protein S12P methylthiotransferase [Fluviicola taffensis DSM 16823] gi|327318158|gb|AEA42650.1| SSU ribosomal protein S12P methylthiotransferase [Fluviicola taffensis DSM 16823] Length = 437 Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 133/458 (29%), Positives = 221/458 (48%), Gaps = 50/458 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYE--RVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 V + GC N +DS + + +E DD++++++NTC + A ++ + R Sbjct: 13 VVTLGCAKNTFDSEVLMAQLKANKFEVEHEAKQDDSEIVIINTCGFIDNAKQESIDTILR 72 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + KN EG V V GC+ Q +++ + P V+ G + LP LL Sbjct: 73 YADAKN----EGLVDKVYVTGCLVQRYKDDLEQEIPEVDAFFGTRD---LPRLL------ 119 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + DY E ERL Y A+ I EGCD+ C+FC +P RG +S Sbjct: 120 -KTLKADYKHELVGERLLTTPSHY-------AYFKIAEGCDRPCSFCAIPLMRGKHVSTP 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRL 263 + Q+V A+ L GV EI L+ Q++ + GLD +K ++LL L+ ++G+ +RL Sbjct: 172 MDQLVASAKSLAAQGVKEILLIAQDLTYY---GLDIYKKRNLAELLDQLAAVEGIEWIRL 228 Query: 264 RYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 Y P D+ D ++K + YL +P+Q GS +IL+SM R T + ++ Sbjct: 229 HYAFPAGFPMDVLDAMVKYPN----VCLYLDMPLQHGSTKILQSMRRGITREKTEALVHT 284 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR P IAI + I G+PGET++DF+ +D V+++ + + F YS T ++ + Sbjct: 285 IREKVPGIAIRTTLIAGYPGETEEDFQEMVDFVERMRFDRLGIFTYSHEEDTHAHSLEDD 344 Query: 382 VDENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434 V + VK A+ ++ LQ + N +G+ +VL ++ E +GR SP Sbjct: 345 VPDEVKRQRADEIMELQSGI---SYELNQTKIGKTFKVLFDR--IEGDYFIGRTEFDSPE 399 Query: 435 LQSVVLNSKNH---NIGDIIKVRITDVKISTLYGELVV 469 + + VL K+ ++GD V IT LYG+ + Sbjct: 400 VDNEVLVKKSEGYVSVGDFALVEITSADHYDLYGKFAM 437 >gi|330444283|ref|YP_004377269.1| MiaB-like tRNA modifying protein [Chlamydophila pecorum E58] gi|328807393|gb|AEB41566.1| MiaB-like tRNA modifying enzyme [Chlamydophila pecorum E58] Length = 425 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 125/446 (28%), Positives = 212/446 (47%), Gaps = 38/446 (8%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFLG 85 F + GC++N Y+ D G E + + AD+ ++NTC + A G Sbjct: 14 FKLVCLGCRVNQYEVQGYRDQLTLLGCEEITDPETPADICIVNTCAVTSSAESS-----G 68 Query: 86 R--IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 R IR + ++ + +VV GC+ +A+ +V + + + +L + Sbjct: 69 RHAIRQM----CRQNPEARLVVTGCLGEADKSFFASLGRECLLVPNKEKHLLIEKLFPQ- 123 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +ED E G +R AF+ +Q+GC+ FC++C++PY RG + Sbjct: 124 ------------MEDFPEFCIRSFEGKSR-----AFIKVQDGCNSFCSYCIIPYLRGRSV 166 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR ++++E R LI+ G E+ + G NV + +G + + LL + + GL RL Sbjct: 167 SRPSQEILEEIRTLIEGGYREVVISGINVGDYSHEGD-----SLASLLRKIDMLPGLERL 221 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ P D+ + L +A P HL +QSGS+ ILK MNR++T + ++R+R Sbjct: 222 RVSSIDPDDVQEDLCQALVSCKHTCPSSHLVLQSGSNAILKRMNRKYTRNMFLDCVERLR 281 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S P ++D IVGFPGE+D DF T+ +V+ +G+ + F YSPR T + QV Sbjct: 282 SFDPHYTFTTDVIVGFPGESDQDFEDTVKIVEDVGFIKVHIFPYSPRPRTRAYSYEGQVP 341 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + AER L + + + +G VL+E+ G+ G +P+ V K Sbjct: 342 AQILAERKKYLAEVAKTVAKKEMEKRLGTRTTVLVEQVS--CGEACGHTPYFDMVRFPIK 399 Query: 444 NH-NIGDIIKVRITDVKISTLYGELV 468 +I ++ V + +VK + GE V Sbjct: 400 GEVSINTMVPVVLREVKEESFSGEQV 425 >gi|170702240|ref|ZP_02893142.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ambifaria IOP40-10] gi|172060745|ref|YP_001808397.1| ribosomal protein S12 methylthiotransferase [Burkholderia ambifaria MC40-6] gi|238065301|sp|B1YR17|RIMO_BURA4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|170132845|gb|EDT01271.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ambifaria IOP40-10] gi|171993262|gb|ACB64181.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ambifaria MC40-6] Length = 453 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 132/477 (27%), Positives = 217/477 (45%), Gaps = 61/477 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 5 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCV---AQAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ + A G ++ P V V GP + + Sbjct: 64 IGEA-------LTENGK--VIVTGCLGAKSSASGSNLIEEVHPKVLAVTGPHAVGEVMQA 114 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + K D F L + G A+L I EGC+ CTFC++P R Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K + Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221 Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298 DL+ +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + + + + R + PD+ I S FI GFPGET++ F +D + + Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAE 336 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YSP G + + + ++V+ R + E VG+ ++VLI Sbjct: 337 LDRVGCFAYSPVEGATANELDGALPDDVREARRARFMEVAEEVSAQRIQRKVGKTLKVLI 396 Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 397 DEVSAEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453 >gi|26349829|dbj|BAC38554.1| unnamed protein product [Mus musculus] gi|148700457|gb|EDL32404.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_d [Mus musculus] Length = 520 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 126/457 (27%), Positives = 218/457 (47%), Gaps = 41/457 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 63 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 119 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K VV+AGCV QA+ + + ++G Q R+ E++E Sbjct: 120 NSIKKAQEENKK------VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V +D +RL + +D RK + ++I GC CT+C + RG Sbjct: 171 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257 S + ++V+ A++ GVCEI L ++ A+ R G D LL+ L E+ Sbjct: 230 ASYPIDELVERAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 284 Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 G+ Y H +M+ L + +LH+PVQS SD +L M R + Sbjct: 285 AMLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMDMKREYCVA 339 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 ++++++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ PR GT Sbjct: 340 DFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGT 399 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGR 431 P + EQV +VK +R L + S+N D +G+ +VL+ + + V Sbjct: 400 PAAKA-EQVPAHVKKQRTKDLSRVFH----SYNPYDHKIGERQQVLVTEESFDSKFYVAH 454 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + + V++ +G +++V I + L G+ V Sbjct: 455 NRFYEQVLVPKNPAFMGKMVEVDIYESGKHFLKGQPV 491 >gi|288940181|ref|YP_003442421.1| MiaB-like tRNA modifying enzyme [Allochromatium vinosum DSM 180] gi|288895553|gb|ADC61389.1| MiaB-like tRNA modifying enzyme [Allochromatium vinosum DSM 180] Length = 469 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 132/450 (29%), Positives = 212/450 (47%), Gaps = 30/450 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFL 84 R +++ GC++N + F ++G+ V + A+LIV+NTC + +A K L Sbjct: 2 RVRLQTLGCRLNEAELESWARDFQARGFTIVEDETAPAELIVVNTCAVTGEAVRKSRQIL 61 Query: 85 GRI-RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY--------- 134 R R +R+ G LV + G A + S ++ P + Sbjct: 62 RRAQRRHPGARLIVSG-CLVSLDGGATSAGTAQAFPLSSLLPTSTPPASSTVASDGLIVV 120 Query: 135 -----RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKF 189 RL EL+ A G +D+ + + + R R AF+ IQ+GC Sbjct: 121 NRDKDRLVELV-LAALG---LDSGLPHPSATNAMDLAAPLFARGR-QRAFVKIQDGCRYQ 175 Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249 CTFCV RG E SR L ++V E + D+G+ E+ L G ++ + G L + + Sbjct: 176 CTFCVTTQARGPERSRPLPEIVREVERFQDSGIREVVLTGVHLGGY-GADLGTD---LTH 231 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 L+ L + RLR + P D+ + D LMP+LHLP+QSGSDR+L+ M RR Sbjct: 232 LIERLLNETAIPRLRLGSLEPWDLPERFWSLFADRR-LMPHLHLPLQSGSDRVLRRMARR 290 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 EY ++++ R+ PD+ +++D IVGFPGE DDD+R T +L + + + F YSP Sbjct: 291 CKRDEYIRLVEGARAAIPDLNLTTDIIVGFPGEDDDDWRQTFELAESLRFGHIHVFGYSP 350 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGK 427 R GTP + VD + R+ L+ ++ +G+ + +L E+ E Sbjct: 351 RPGTPAAGFANPVDARTRRRRVGELESLAHRSRLQILRDQIGKTVMLLHERLPDAFEGRP 410 Query: 428 LVGRSP-WLQSVVLNSKNHNIGDIIKVRIT 456 G +P +L V ++ G +I+VRIT Sbjct: 411 RSGYTPNYLPVHVHSAAPIGEGSLIQVRIT 440 >gi|73667402|ref|YP_303418.1| tRNA 2-methylthioadenosine synthase [Ehrlichia canis str. Jake] gi|72394543|gb|AAZ68820.1| tRNA 2-methylthioadenosine synthase [Ehrlichia canis str. Jake] Length = 411 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 130/443 (29%), Positives = 224/443 (50%), Gaps = 38/443 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S +++ E D+IV+++C + +A +V S +IR Sbjct: 4 VITFGCRLNFYESEVIKNNLRKAQLE--------DVIVIHSCAVTNEAERQVRS---KIR 52 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L N+ ++ ++VAGC AQ E+ P V V+G Q + + GK Sbjct: 53 KLYNN----NANVKIIVAGCAAQL-NPELYINMPGVIKVLGNQDKLKYESYVTE---GKV 104 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 +V +ED E IV NR G + A + IQ GC+ CTFCV+ RG S ++ Sbjct: 105 IVS---KIEDSRE---IVQNSVNRFSGKSRALIEIQNGCNHECTFCVITKARGDNRSLNI 158 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVRLRY 265 ++ + R ++NG E+ G +++ + GLD G++ + + LS + L RLR Sbjct: 159 EDIITKVRDCVNNGYNEVVFTGVDISDF---GLDIYGQRVLGTMVKRVLSAVPQLRRLRL 215 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ ++ D L+ + MP+LHL +QSG++ ILK M RRH + ++IR+ Sbjct: 216 SSIDVAEIEDDLVDIIVNEPRFMPHLHLSLQSGNNLILKRMKRRHNREQVIDFCNKIRNK 275 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 R ++A +D IVGFP ET++ F T+ L+++ + F YS R GTP + M QV + Sbjct: 276 RKEVAFGADIIVGFPTETEEMFNDTVRLIEEANISYLHVFPYSRREGTPAARM-PQVIQE 334 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 VK R+ L + ++ SF + + V++EK G GR+ V + + Sbjct: 335 VKKRRVKYLLEFAEKRLHSFYNTLLHTKQSVIVEKSG------TGRAENFALVKFANNDV 388 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 + I++V+IT V+ + L +++ Sbjct: 389 KLQSIVEVKITTVEGNCLIAQVL 411 >gi|222150096|ref|YP_002551053.1| hypothetical protein Avi_4197 [Agrobacterium vitis S4] gi|221737078|gb|ACM38041.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 424 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 116/398 (29%), Positives = 188/398 (47%), Gaps = 30/398 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M+ G ++ I++NTC + +A + Sbjct: 6 VITFGCRLNTYESEVMKAEAEKAGLDQA--------ILVNTCAVTGEAVRQARQ------ 51 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLER 142 +E ++V GC AQ + P V++V+G + Y LP+ Sbjct: 52 -AIRRARRENPQARIIVTGCAAQTDAAG-FAAMPEVDLVLGNEEKLKAEHYRALPDFGVA 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A RV D E + +S +DG V FL +Q GCD CTFC++PY RG Sbjct: 110 AAEKLRVNDIMSVTETAPQMVSHIDGH------VRGFLQVQNGCDHRCTFCIIPYGRGNS 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + VV++ARKL++NG E+ L G + ++ G L G+ L ++ ++R Sbjct: 164 RSVPMGAVVEQARKLVENGYREVVLTGVDATSY-GADLPGQPSLGLLAKTLLKQVPDILR 222 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ L+ + MP+LHL +Q G D ILK M RRH+ + ++ Sbjct: 223 LRLSSIDSIEVDRHLLDLIAEEPRFMPHLHLSLQHGDDMILKRMKRRHSRADALGFATQV 282 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RPD + +D I GFP ET++ + L +IG A F YSPR GTP + M Q+ Sbjct: 283 RVLRPDFSFGADMIAGFPTETEEMAANSARLAQEIGIAHLHVFPYSPRPGTPAARM-PQL 341 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 D + R L+ + + + VG ++L+E+ Sbjct: 342 DRALVKARAASLRAVAEQLHHAHLEHMVGSQQKLLVER 379 >gi|322800811|gb|EFZ21687.1| hypothetical protein SINV_11782 [Solenopsis invicta] Length = 538 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 124/460 (26%), Positives = 211/460 (45%), Gaps = 47/460 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q +VK++GC N D+ M + GY ADL +LN+C ++ A ++ + + Sbjct: 59 QTIYVKTWGCTHNSSDTEYMAGQLATYGYNLTEDKLKADLWLLNSCTVKNPAEDQFRNEI 118 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA- 143 +N+ VVVAGCV Q + + V+G Q R+ E++E Sbjct: 119 EHGKNIGKH---------VVVAGCVPQGAPKSSFLQG---LSVIGVQQIDRVVEVVEETL 166 Query: 144 -----RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 RF K+ D+ + L V R+ + + I GC CT+C + Sbjct: 167 KGNTVRFLKQKKDSGKKIGGASLSLPKV-----RRNPLIEIIAINTGCLNQCTYCKTKHA 221 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI- 257 RG S ++V+ A++ + GVCE+ L ++ A+ G+ + +LL+ L ++ Sbjct: 222 RGELGSYPPEEIVERAKQAFEEGVCELWLTSEDTGAY-GRDIG---TNLPELLWQLVDVI 277 Query: 258 -------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 G+ Y H +M+ L + +LH+PVQSGSD++L M R + Sbjct: 278 PDGCMMRVGMTNPPYILEHLDEMAKILQHPR-----VYSFLHIPVQSGSDQVLADMKREY 332 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 T E+ +++ + P + I++D I GFP ET+ DF TM L K + F +Y PR Sbjct: 333 TRAEFEHVVNFLSERVPGLTIATDIICGFPTETEMDFEETMTLCQKYKFPSLFINQYFPR 392 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLRE--QQVSFNDACVGQIIEVLIEKHGKEKGKL 428 GTP + ML+ V A+++ K+L E Q VG +VL+ + +K Sbjct: 393 PGTPAARMLK-----VPAQKVKARTKRLSEFFQSYELYGHKVGLQQKVLVTEVSHDKQHY 447 Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VG + + + V++ K +G +I V+I + ++ GE + Sbjct: 448 VGHNKFYEQVLIPMKQEYMGKMIDVKIKEATKFSMKGEPI 487 >gi|327537949|gb|EGF24646.1| RNA modification enzyme, MiaB family [Rhodopirellula baltica WH47] Length = 428 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 117/403 (29%), Positives = 203/403 (50%), Gaps = 38/403 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ GC++N Y++ + + GYE + + ADL ++NTC + E K + Sbjct: 4 KLRTRTLGCKVNQYETELVRQGLQTIGYEDASDGESADLCIVNTCTVTETGDAKSRQVVR 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R+ +E D +VV GC A EE+ +V V+ + L +L+ RF Sbjct: 64 RLN-------RENPDARIVVMGCYATRAPEEVSALPGVVEVLTDKR---ELGDLM--GRF 111 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G V T S G RKR A++ +Q+GC C++C++P R SR Sbjct: 112 GVIDVPTGLS------------GFAGRKR---AYVKVQDGCLLRCSYCIIPMVRPKLHSR 156 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLV 261 ++VDE +L+D G E+ L G ++ W E + L+ L +I G Sbjct: 157 PSQEIVDEVTRLVDAGHREVILTGIHLGHYGVDWNRNKPREEWVRLAHLVKDLCQIPGQF 216 Query: 262 RLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R ++ +++ LI + D ++P+LHL +QSGSD +L+ M RR + + +D Sbjct: 217 RIRMSSIEATEVTRELIGVMAEFPDKVVPHLHLCLQSGSDSVLRRMRRR---WGTKMFLD 273 Query: 321 RIRSVRPDI---AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 R R +R + AI++D I GFPGET+++F T+ + G+++ +F YS R GTP + Sbjct: 274 RCRLLRESLDRPAITTDIIAGFPGETEEEFEQTLRTCREAGFSKIHAFPYSARRGTPAAE 333 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 +Q+D+ + +ER+ L + E + + + VG +E+L+E+ Sbjct: 334 RDDQLDKGLISERVDRLGEVEAELRQQYYETLVGSDLELLVEE 376 >gi|78357764|ref|YP_389213.1| hypothetical protein Dde_2722 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220169|gb|ABB39518.1| Protein of unknown function UPF0004 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 435 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 109/367 (29%), Positives = 183/367 (49%), Gaps = 29/367 (7%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P RF+ + GC++N Y++ + +++ ++G+ V S +ADL+++NTC + KA V + Sbjct: 5 PTRFYAATLGCKINQYETQALREVWQARGFTEVQSTAEADLVLVNTCAVTAKAVSDVRAT 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + R + N + +VV GC AQ G+E+ + VV PQ L++ Sbjct: 65 V-RQAHRANPLAR------IVVTGCAAQVLGDELAALPGVAAVV--PQDAK---AGLKQW 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G + F + + GY R R V + +Q+GC CT+C+VP+TRG Sbjct: 113 PQGAVSAPSGSGAAQAFPDMQV--SGYTRARAV---VKVQDGCSHRCTYCIVPFTRGPSR 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-----SEIK 258 SR+ + DE R+L+ G E+ L G N+ + G+ L F D++ L E Sbjct: 168 SRAPHDIADEVRRLLQGGFRELILSGVNLRQY-GRDL-AMPADFWDVVARLGNEFGPEWA 225 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G RLR ++ P + + ++ P LHL +QSGS +L+ M R H Y + + Sbjct: 226 GRARLRISSLEPGQLGSKALDTLAANPLVSPQLHLSLQSGSASVLRRMGRGH--YTPQPL 283 Query: 319 IDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 +D + S+R P + +D ++GFPGET ++F T+ ++ A F YS R GT Sbjct: 284 LDFLHSLRGIWPVYGLGADILMGFPGETREEFEETLAFCRELPLTYAHVFPYSRRPGTAA 343 Query: 376 SNMLEQV 382 ++M +Q+ Sbjct: 344 ADMKDQL 350 >gi|21617853|ref|NP_653119.1| CDK5 regulatory subunit-associated protein 1-like 1 [Mus musculus] gi|81879575|sp|Q91WE6|CDKAL_MOUSE RecName: Full=CDK5 regulatory subunit-associated protein 1-like 1 gi|16359212|gb|AAH16073.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus] gi|56205715|emb|CAI24677.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus] gi|56238093|emb|CAI25816.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus] gi|56800055|emb|CAI35240.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus] gi|56800204|emb|CAI35144.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus] gi|148700456|gb|EDL32403.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c [Mus musculus] Length = 578 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 126/457 (27%), Positives = 219/457 (47%), Gaps = 41/457 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 63 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 119 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K VV+AGCV QA+ + + ++G Q R+ E++E Sbjct: 120 NSIKKAQEENKK------VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V +D +RL + +D RK + ++I GC CT+C + RG Sbjct: 171 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257 S + ++V+ A++ GVCEI L ++ A+ R G D LL+ L E+ Sbjct: 230 ASYPIDELVERAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 284 Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 G+ Y H +M+ L + + +LH+PVQS SD +L M R + Sbjct: 285 AMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMDMKREYCVA 339 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 ++++++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ PR GT Sbjct: 340 DFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGT 399 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGR 431 P + EQV +VK +R L + S+N D +G+ +VL+ + + V Sbjct: 400 PAAKA-EQVPAHVKKQRTKDLSRVFH----SYNPYDHKIGERQQVLVTEESFDSKFYVAH 454 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + + V++ +G +++V I + L G+ V Sbjct: 455 NRFYEQVLVPKNPAFMGKMVEVDIYESGKHFLKGQPV 491 >gi|121601837|ref|YP_988357.1| MiaB family tRNA modification protein [Bartonella bacilliformis KC583] gi|120614014|gb|ABM44615.1| tRNA modification enzyme, MiaB family [Bartonella bacilliformis KC583] Length = 427 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 116/385 (30%), Positives = 191/385 (49%), Gaps = 31/385 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S + S G +++ D A I+ NTC + +A + + + R Sbjct: 7 TFGCRLNSYESEVIRQKSSSAGLDQLK--DGA--IIFNTCAVTSEAVRQAKQAIRKAR-- 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144 +E ++V GC AQ E + + V++++G +Y +LP+ Sbjct: 61 -----RENPHTRIIVTGCAAQTETDNFSLMTE-VDLILGNEDKLHAHSYRQLPD------ 108 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEI 203 FG D V D E N G T AF+ IQ GCD CTFC++PY RG Sbjct: 109 FGINH-DEKIRVNDIMEVRKNAPHMINSIEGRTRAFVQIQNGCDHRCTFCIIPYGRGPSR 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262 S + ++++ ++LIDNG+ E+ L G ++ ++ G L G K T L+ + L I L R Sbjct: 168 SVPMGTIIEQIKRLIDNGIQEVVLTGVDLTSY-GSNLPG-KATLGKLVSAILHHIPDLPR 225 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L ++ + LI + +MP+LHL +Q+G + ILK M RRH Q + Sbjct: 226 LHLSSIDSIEADQELIDLLAYEERIMPHLHLSLQAGDNMILKRMKRRHLREHAIQFCQDL 285 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RP + +D I GFP ET+ F+ +++L++ G F +SPR GTP + M + Sbjct: 286 RAKRPSMVYGADLIAGFPTETEKMFQNSLNLINDCGLIHLHVFPFSPRKGTPAARMPQVN 345 Query: 383 DENVK--AERLLCLQKKLREQQVSF 405 E +K AE+L +K ++ +S+ Sbjct: 346 RETIKMRAEKLRKAGEKAYQKHLSY 370 >gi|209551318|ref|YP_002283235.1| MiaB-like tRNA modifying enzyme [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537074|gb|ACI57009.1| MiaB-like tRNA modifying enzyme [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 424 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 119/400 (29%), Positives = 187/400 (46%), Gaps = 30/400 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M+ G + I++NTC + +A + Sbjct: 6 VITFGCRLNTYESEVMKAQAEKAGLN--------NAILINTCAVTGEAVRQARQ------ 51 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142 ++ ++V GC AQ E E + V+ V+G + +Y LP+ Sbjct: 52 -AIRRARRDNPHARIIVTGCAAQTEKETFAEMAE-VDAVLGNEEKLASASYRSLPDFGVS 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 RV D + + +DG V AF+ +Q GCD CTFC++PY RG Sbjct: 110 TEEKLRVNDIMSVKATAPQMVRHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + VVD+ARKL D+G EI L G + ++ G L G L ++ + R Sbjct: 164 RSVPMGAVVDQARKLADSGYREIVLTGVDATSY-GGDLPGAPTLGLLAKTLLKQLPDISR 222 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ + L+ D MP+LHL +Q G D ILK M RRH+ + + I+ + Sbjct: 223 LRLSSIDSIEADAHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHSRADALRFIEDV 282 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RP+++ +D I GFP ET++ F + L ++ G A F YSPR GTP + M Q+ Sbjct: 283 RRLRPEMSFGADMIAGFPTETEEMFGNAVRLAEEAGIAHLHVFPYSPRPGTPAARM-PQL 341 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 D ++ +R L+ S D VG +L+E +G Sbjct: 342 DRSLVKDRAARLRATGHRLHQSHLDGMVGTRQWLLVENNG 381 >gi|260424643|ref|ZP_05778954.1| RNA modification enzyme, MiaB family [Dialister invisus DSM 15470] gi|260402668|gb|EEW96215.1| RNA modification enzyme, MiaB family [Dialister invisus DSM 15470] Length = 433 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 115/423 (27%), Positives = 212/423 (50%), Gaps = 33/423 (7%) Query: 52 GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ 111 GYE + A +I++NTC + A E+ + + K KEG +V AGC+ Q Sbjct: 10 GYELTEDLSTAQIIIINTCTFIDPAKEESIQTILQAARYK----KEGVCERLVAAGCLTQ 65 Query: 112 AEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--GKRVVDTDYSV---EDKFERLSIV 166 E + + P +++ +G ++ + E+++ + K++ D + E+ R + Sbjct: 66 QYKEALGKEIPEIDIFIGTDSWQHILEVVQESYIHGNKKIYRFDTAPCEHEELIPRQPLT 125 Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226 +A++ I EGC CTFC +PY RG SRS+ VV E ++L GV E Sbjct: 126 PP-------YSAYIKIAEGCSNGCTFCYIPYVRGAMRSRSIPSVVHEVKRLSSEGVREFN 178 Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286 L+ Q+ +++ G+ L+ + T + LL L +I + +R +P D L++ + Sbjct: 179 LIAQD-SSFYGRDLN-DGTTLARLLKELVKIDNVKWIRLFYLYPTYFDDELLEIITKEEK 236 Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 + Y+ +P+Q SD +L+ M+RR ++ ++++ ++R+ P I I + +VGFPGET+ D Sbjct: 237 ICKYVDIPLQHISDSVLRRMHRRDSSQSIKKLLKKLRNTTPYITIRTTLMVGFPGETEAD 296 Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQV 403 F+ + + + + +F YS + GTP + M++QV E +K R L+ Q ++ E+ Sbjct: 297 FKELLTFIKAVKFDNMGAFTYSAQDGTPAARMVDQVTEEIKENRYHELMAAQAEISEEN- 355 Query: 404 SFNDACVGQIIEVLIEK-------HGKEKGKLVGRSPWLQSVVLNSKNHNI--GDIIKVR 454 N +G EVL+E+ + + KG+ ++P + V ++ GD +K Sbjct: 356 --NRNLIGVDTEVLVEELLDDGCGNLQAKGRASFQAPEVDGNVYIDHPGDLRPGDFVKAH 413 Query: 455 ITD 457 I D Sbjct: 414 IID 416 >gi|327399314|ref|YP_004340183.1| 30S ribosomal protein S12 methylthiotransferase rimO [Hippea maritima DSM 10411] gi|327181943|gb|AEA34124.1| Ribosomal protein S12 methylthiotransferase rimO [Hippea maritima DSM 10411] Length = 429 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 119/438 (27%), Positives = 212/438 (48%), Gaps = 26/438 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + +++S GC N DS M + ++G + + AD++++NTC E A E+ + Sbjct: 2 KIYIESLGCPKNTADSEYMLGILKTKGCIIADRPEQADVLMVNTCGFIEPAKEESIDTIL 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + LK K ++V GC+ + +++ P V+ +G R+ ++ Sbjct: 62 ELAQLK----KNDPSKRLIVCGCLYERYRQQLKEELPEVDGFLGVNELDRISDV------ 111 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V+ ++++ + I+ + +L I +GC CTFC +P +G SR Sbjct: 112 ---VLGRSHNLKKPYIHRHIIGPKH------IGYLKIADGCSNRCTFCAIPLIKGGFKSR 162 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + ++V+EA L D GV E+ + Q+ A+ + K +LL L EI+GL +R Sbjct: 163 GIDELVEEAEVLADKGVRELYITAQDTTAYMFE--KNRKNALVELLKKLDEIEGLSWVRL 220 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P ++D LI+ ++ Y+ +P Q SDR+L M R +T + ++ D++R Sbjct: 221 MYTYPSYVTDELIEFMSTARRIVRYIDMPFQHASDRVLDDMGRGYTVKDMEKLTDKLRLK 280 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 +AI S FIVGFP E + DF +D ++ A FKY GT +DE Sbjct: 281 VKGVAIRSTFIVGFPTEEEKDFDRLLDFLEYNQLDWAGFFKYYHEEGTQAFKNFYDMDEE 340 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440 K +RL+ Q N+ VG+++EV++++ +++G +GRS + VVL Sbjct: 341 TKDDRLIEAQSLALSITEGINEKFVGEVLEVIVDEPAEDEGYWIGRSYRSAYEIDGVVLI 400 Query: 441 NSKNHNIGDIIKVRITDV 458 + N GD +KV+I +V Sbjct: 401 KADNLKPGDFVKVKIEEV 418 >gi|297617227|ref|YP_003702386.1| MiaB-like tRNA modifying enzyme YliG [Syntrophothermus lipocalidus DSM 12680] gi|297145064|gb|ADI01821.1| MiaB-like tRNA modifying enzyme YliG [Syntrophothermus lipocalidus DSM 12680] Length = 442 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 120/448 (26%), Positives = 215/448 (47%), Gaps = 25/448 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D+ M + +GY VN MD AD++++NTC A E+ + L L Sbjct: 9 SLGCPKNRVDTEVMLGLLKREGYLVVNKMDQADIVIVNTCGFVTPAKEEAINTL-----L 63 Query: 91 KNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR- 148 + + +K+ G++ ++A GC+ Q E+ P ++ +VG + R+ E++ R + G+R Sbjct: 64 EVALLKDKGNVKKIIATGCLVQRYARELQEEIPEIDALVGVSDFVRIAEVVARVQTGERC 123 Query: 149 --VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V + + R+ G+ +L I EGCD C++C +P RG SR Sbjct: 124 CLVGELSNRFRESGPRVLSTPPGW-------VYLKIAEGCDNRCSYCAIPLIRGPFRSRP 176 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVRLRY 265 LS +++EA+KL G+ E+ L+ Q+ + G D EK LL I+G+ +R Sbjct: 177 LSDILEEAQKLAGLGIKELVLVAQDTTMY---GQDLEKNLSLALLLQNLSRIEGIEWIRV 233 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +HP ++ +++ G ++PYL LP+Q D +LK M R ++ +I+ +R Sbjct: 234 MYAHPLHVTPEMVEVIGREPGVIPYLDLPIQHADDSVLKRMGRGYSRSYLVSLIEDLRRR 293 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P + + + +VGFPGE++ F V + G+ +F YS GT + + V E Sbjct: 294 LPGLVLRTTVMVGFPGESESSFENLCSFVKETGFDWLGAFMYSEEEGTAAARWEDDVLEE 353 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQSVVL-- 440 K R + + N G++ ++L+E G G+ ++P + + + Sbjct: 354 EKQRRWREIMRMQSAITSELNRRRTGKVEQILVEGCTGPGVYWGRGYYQAPEVDGITILK 413 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++K +G ++ R+ D K + E+V Sbjct: 414 SAKPLQVGQMVNARLVDSKGYDVTAEVV 441 >gi|291614491|ref|YP_003524648.1| MiaB-like tRNA modifying enzyme YliG [Sideroxydans lithotrophicus ES-1] gi|291584603|gb|ADE12261.1| MiaB-like tRNA modifying enzyme YliG [Sideroxydans lithotrophicus ES-1] Length = 441 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 136/470 (28%), Positives = 227/470 (48%), Gaps = 63/470 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 PQ FV S GC DS + ++GY S +DADL+V+NTC + A + Sbjct: 8 PQIGFV-SLGCPKATVDSEHILTRMRAEGYIITPSYEDADLVVVNTCGFIDSAVAESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ--------TYYR 135 +G ++E G V+V GC+ A+G+ +++ P V V GP + Sbjct: 67 IGE-------ALQENGK--VIVTGCLG-AKGDIVMQTHPKVLAVTGPHETDAVMNAVHQH 116 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 LP L D + L + G A+L I EGC+ CTFC++ Sbjct: 117 LPRL-----------------HDPYVDL-VPPQGVRLTPQHFAYLKISEGCNHRCTFCII 158 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEK 244 P RG +SR + V+ EA KL+++GV E+ ++ Q+ +A W GK L K Sbjct: 159 PSLRGDLVSRPVGDVMLEAEKLVESGVRELLVISQDTSAYGVDVKYRTGFWGGKPL---K 215 Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 +DL +L + VRL Y +P + A G + +PYL +P Q ++RILK Sbjct: 216 TRMTDLAEALGSLGVWVRLHYVYPYPSVDDVIPLMAEGKI---LPYLDIPFQHANERILK 272 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 M R ++ + I + RS+ PDI + S FIVGFPGET+++F +D +++ + + Sbjct: 273 LMKRPASSENVLKRIQQWRSICPDIVLRSTFIVGFPGETEEEFEELLDFIEEAQLDRVGA 332 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 FKYSP G + + + VD + + + RL+ LQ+++ +++ VGQ + VL++ Sbjct: 333 FKYSPVEGAASNELPDHVDPDEQEDRLARLMYLQEEISAGKLAKK---VGQTMTVLVDDV 389 Query: 422 GKEK--GKLVGRSPWLQSVV-LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + +P + +V ++ + +G+ + V+I D L+ E+V Sbjct: 390 DDDGSVARSAADAPEIDGLVYIDDEQLEVGEFVTVKIIDSDEHDLWAEVV 439 >gi|150021041|ref|YP_001306395.1| MiaB-like tRNA modifying enzyme YliG [Thermosipho melanesiensis BI429] gi|238066621|sp|A6LM59|RIMO_THEM4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|149793562|gb|ABR31010.1| MiaB-like tRNA modifying enzyme YliG [Thermosipho melanesiensis BI429] Length = 427 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 130/453 (28%), Positives = 222/453 (49%), Gaps = 41/453 (9%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI----REKAAEKVYS 82 F+V+ GC N D ++ G V+++ DAD ++++TC ++++ E++ S Sbjct: 3 FYVEVLGCPKNEADCALLKSHLRKMGNNIVDNLSDADAVIIDTCGFILDAKKESIEEILS 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 ++ K+G +L V V GC+ Q G+E+ + P V+ G LP Sbjct: 63 YV---------EYKKGKNLKVFVTGCLVQRFGKELKKEIPEVDGWFGV-----LPPKEIA 108 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 GKR V + + E + +G + G A++ I +GCD+ C+FC +P +G Sbjct: 109 THIGKRNV-----IPEVPEPVYNFEGRVDN--GQYAYVKISDGCDRACSFCTIPLFKGSF 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 SR + ++ E LI+ + EI L+ Q+ G G+D K +LL ++++ G Sbjct: 162 KSRKIDDILKEIEFLIERKIKEIILVAQDTT---GYGIDIYRKQMLPELLKRINDLSGDF 218 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R HP ++D +I+A D ++ Y +PVQ+GSD+ILK MNR + + ++ Sbjct: 219 WVRVMYMHPDHITDDIIEAFS-YDKVLKYFDIPVQNGSDKILKLMNRSRKTRQLYSLFEK 277 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ D + + IVGFPGET DF T+ + ++ + + +F YS ++ + Sbjct: 278 IRNFYSDAILRTSIIVGFPGETRKDFDETLKFIKEVKFDRLGAFIYSDEEEASSFSLSGK 337 Query: 382 VDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGRS----PWL 435 V + ERL L + Q+SF N+ VG+ ++VL ++ E G L+GRS P + Sbjct: 338 VPREIAEERLEELMD--IQSQISFEKNEKLVGKKLKVLFDEE--EDGVLIGRSYMDAPEI 393 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V G V+IT I L GE+V Sbjct: 394 DANVFVRGEFKKG-FFDVKITSADIYDLEGEIV 425 >gi|124005536|ref|ZP_01690376.1| conserved hypothetical protein [Microscilla marina ATCC 23134] gi|123988970|gb|EAY28563.1| conserved hypothetical protein [Microscilla marina ATCC 23134] Length = 437 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 131/453 (28%), Positives = 223/453 (49%), Gaps = 46/453 (10%) Query: 31 SYGCQMNVYDS------LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + GC N+ DS LR D+ + +E N D+A+++++NTC E A ++ + Sbjct: 15 TLGCSKNLVDSENILTQLRGNDIAVT--HEAQN--DEANVVIVNTCGFIENAKQESIDTI 70 Query: 85 GRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L+ + KE G + + V GC++Q +++ + V+ G + LP LL++ Sbjct: 71 -----LQYADAKEQGLIDKLYVTGCLSQRYKDDLEKEITTVDAFFGTRD---LPLLLKKF 122 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + DY E ERL+ Y A++ I EGCD+ C+FC +P RG + Sbjct: 123 K-------ADYKHELVGERLTTTPRHY-------AYMKIAEGCDRPCSFCAIPIMRGKHV 168 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 S + ++V A+ + NG E+ L+ Q++ + GLD +K ++L+ L++++G+ Sbjct: 169 SHPMEELVKSAQTMAKNGTKELILIAQDLTYY---GLDLYKKRNLAELMARLADVEGIEW 225 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R ++P ++ A + YL +P+Q GS +LK M R T + Q+ID I Sbjct: 226 IRLQYAYPAGFPLDILDAIKQYPNVCNYLDMPLQHGSSNVLKLMRRGITREKTEQLIDTI 285 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P+IA+ + I G PGET+ DF V+K + + F YS T M + V Sbjct: 286 RQKVPEIALRTTLIAGHPGETEADFEEMYTFVEKSRFDRLGIFTYSHEDNTHSFTMKDDV 345 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438 E VK +R + +E N VG+ ++V+I++ KE G +GR SP + + Sbjct: 346 PEEVKEDRAGQVMALQQEISAELNQQKVGKTLKVMIDR--KEGGYFIGRTESDSPEVDNE 403 Query: 439 VLNSKNHN---IGDIIKVRITDVKISTLYGELV 468 VL S + +G+ ++I + LYGELV Sbjct: 404 VLISAENTYLPVGEFAPIKIINATEFDLYGELV 436 >gi|163852140|ref|YP_001640183.1| MiaB-like tRNA modifying enzyme [Methylobacterium extorquens PA1] gi|163663745|gb|ABY31112.1| MiaB-like tRNA modifying enzyme [Methylobacterium extorquens PA1] Length = 410 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 113/355 (31%), Positives = 176/355 (49%), Gaps = 38/355 (10%) Query: 31 SYGCQMNVYDS--LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 ++GC++N +S LR ++G DL+V+NTC + +A + + R+ Sbjct: 7 TFGCRLNTVESEVLRGHAEPGAEGR---------DLVVVNTCAVTAEAGRQARKAIRRL- 56 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS----PIVNVVVGPQTYYRLPELLERAR 144 SR + G + +VV GC G E+ R S P V +VG R + Sbjct: 57 ----SRERPGAE--IVVTGC-----GAEVERASYAAMPEVARLVGNAAKLRPASW----Q 101 Query: 145 FGKRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G D E I G+ R AF+ +Q GCD CTFCV+P+ RG Sbjct: 102 SGTAPAPEDIMAVRTAEPTHITTMSGHTR-----AFVPVQNGCDHRCTFCVIPFGRGNSR 156 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S L++ V + R+++++G CE+ L G ++ A+ G+ LD E + L+E+ LVRL Sbjct: 157 SVPLAEAVAQVRRIVEHGGCEVVLTGVDLTAY-GRDLDSELSLGRLVRTILAEVPDLVRL 215 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ + LI A + LMP++HL +Q+G D ILK M RRH+ + ++ + +R Sbjct: 216 RLSSIDSVEADAELIAAFAEEPRLMPHVHLSLQAGDDLILKRMKRRHSRADAIRLCETLR 275 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +RP + +D I GFP ET+ F ++DLV + G F YSPR TP + M Sbjct: 276 DLRPGLVFGADLIAGFPTETEAQFARSLDLVAECGLTHLHVFPYSPRPDTPAARM 330 >gi|227539201|ref|ZP_03969250.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC 33300] gi|227240883|gb|EEI90898.1| 2-methylthioadenine synthetase [Sphingobacterium spiritivorum ATCC 33300] Length = 444 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 129/455 (28%), Positives = 223/455 (49%), Gaps = 39/455 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN---SMDDADLIVLNTCHIREKAAEKVYS 82 R V + GC N++DS + E V+ ++ + D++V+NTC + A ++ Sbjct: 16 RVNVITLGCSKNIHDSEVLMGQLKGNQMEVVHEASNIQNNDIVVINTCGFIDNAKQESID 75 Query: 83 FLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L+ S +KE G + V+V GC+++ E+ V+ G LPELL Sbjct: 76 TI-----LQYSELKEQGKINKVIVTGCLSERYKPELQAEISSVDAYFGTND---LPELLS 127 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + DY E ER+ + ++ I EGC++ C+FC +P RG Sbjct: 128 S-------IGADYRHELLGERMLSTPSHF-------SYFKIAEGCNRPCSFCAIPLMRGK 173 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 +S+S+ +V EA+ L NG E+ L+ Q++ + GLD K SDLL +LS++ G+ Sbjct: 174 HVSKSMEDLVKEAKFLASNGTKELILIAQDLTYY---GLDIYGKRNLSDLLRNLSDVDGI 230 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++P ++ A + + YL +P+Q SD +LKSM R T + +++ Sbjct: 231 EWIRLQYAYPSGFPMDILDAMAERSNICNYLDMPLQHISDNMLKSMRRGTTKQKQIDLVN 290 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +IR PDIA+ + I G+PGET+ DF+ ++ V+ + + F YS T ++ + Sbjct: 291 QIRDKVPDIALRTTLICGYPGETEQDFQEMLEWVEDSRFDRLGCFTYSHEEKTHAYSLTD 350 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436 + E VK R+ + + + N +G+I +VL++K + +GR SP + Sbjct: 351 DIPEEVKESRVEQIMEVQQGISYDINQEKIGKIYKVLVDK--VDGDYFIGRTEYDSPEVD 408 Query: 437 SVVLNSKNH---NIGDIIKVRITDVKISTLYGELV 468 + VL S IGD ++V+I + LYG +V Sbjct: 409 NEVLISAKDAYARIGDFVQVKIDRAEDFDLYGTIV 443 >gi|319780719|ref|YP_004140195.1| MiaB-like tRNA modifying enzyme [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166607|gb|ADV10145.1| MiaB-like tRNA modifying enzyme [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 437 Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 123/404 (30%), Positives = 193/404 (47%), Gaps = 34/404 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M S G + + ++ NTC + +A + + + R Sbjct: 15 VVTFGCRLNTYESQVMRREAESAGLGAL----EGGAVIFNTCAVTGEAVRQAKQAIRKAR 70 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPEL--- 139 N R + ++V GC AQ E E+ V++V+G + +Y LP+ Sbjct: 71 R-DNPRAR------IIVTGCAAQTEPEKFAAMDE-VDLVLGNEEKLNANSYRALPDFGVN 122 Query: 140 -LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 E+AR V+ +SV + + VD R R AF+ +Q GCD CTFC++PY Sbjct: 123 DTEKAR-----VNDIFSVRETAGHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYG 172 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG S + VV++ ++L NG EI L G ++ ++ G L G + L ++ Sbjct: 173 RGNSRSVPMGAVVEQVKRLAGNGYAEIVLTGVDMTSF-GADLPGAPKLGKLVKTILKQVP 231 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 + RLR ++ + D L+ A LMP+LHL +QSG D ILK M RRH + + Sbjct: 232 DVKRLRLSSIDSIEADDDLLDAIATEPRLMPHLHLSLQSGDDMILKRMKRRHLRDQSIRF 291 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + +R +RP I +D I GFP ETD+ F + +V++ G F +SPR GTP + M Sbjct: 292 CEDVRKLRPGIVFGADIIAGFPTETDEMFENSEKIVEECGLTHLHVFPFSPREGTPAARM 351 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 Q+ V +R L+ V G +LIE+ G Sbjct: 352 -PQLRREVVKQRAARLRAAGEVAYVRHLSLLTGTRQSILIERDG 394 >gi|45357975|ref|NP_987532.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis S2] gi|44920732|emb|CAF29968.1| Protein of unknown function UPF0004:Deoxyribonuclease/rho motif-related TRAM [Methanococcus maripaludis S2] Length = 425 Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 124/456 (27%), Positives = 232/456 (50%), Gaps = 46/456 (10%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++ YGC +N D+ +++ + +E +++DD+D+IV+NTC +R++ ++ S + Sbjct: 2 KIYIEGYGCTLNTADTQIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR--------- 135 ++L D VVVAGC+A+A ++I + +V++ P+ Sbjct: 62 EYFKSL---------DKKVVVAGCMAKALSKKI---ENLADVLIMPREAQHSGNILKDKL 109 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 L + E+ + ++ + + +K +++S +G+ L I EGC CT+C+V Sbjct: 110 LKDFSEKNNESTQNLNFEDKLNEKIKKVS--------SQGLITALPICEGCLGSCTYCIV 161 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 RG S +V +A +L+ +G + + Q+ + GLD + +L+ +S Sbjct: 162 KRARGNLASYDRDLIVKKAEELVKSGTKCLLVTAQDTACY---GLDNND-SLPNLINDIS 217 Query: 256 EIKGLVRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 EI +R H + + D LI++ V+ +LHLP+QSG D++LK MNR +T Sbjct: 218 EIPEKFAMRIGMMHAKFAEPILDELIESFKSEKVV-KFLHLPIQSGDDQVLKDMNRNYTV 276 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 EY +++ +S ++ ++D IVGFP ET++ F T+++V KI + KYS R Sbjct: 277 DEYISVLNEFKSKIKNLNFTTDVIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKY 336 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 T + +L+QVD ++ ER L + RE N +G+ E+L+ K +G + Sbjct: 337 TKAA-ILKQVDTKIRKERSEILNELRRELSYENNKRHIGETFEILVTKDN------MGVT 389 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++V+ + IG+ +V+IT K L G+L+ Sbjct: 390 DNCKNVIF-EEPAKIGEFKRVKITGAKTFGLSGKLI 424 >gi|167463031|ref|ZP_02328120.1| MiaB-like tRNA modifying enzyme YliG [Paenibacillus larvae subsp. larvae BRL-230010] Length = 325 Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 103/338 (30%), Positives = 187/338 (55%), Gaps = 20/338 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ V + GC+ N+ DS M + +G+ V+ ++A +I++NTC + A E+ + + Sbjct: 3 EKVKVVTLGCEKNLVDSEIMGGLINERGFSLVDQAEEATVIIVNTCGFIDAAKEESINTI 62 Query: 85 GRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L + +K+ L ++V+GC+ Q EE+++ P ++ +VG ++++ +++++A Sbjct: 63 -----LDMAELKQTAHLKALIVSGCLTQRYKEELMKELPEIDGIVGTGDFHKINDIIDQA 117 Query: 144 RFGKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 GK+ + + ++ E R I Y TA++ I EGCD CTFC +P RG Sbjct: 118 LNGKKPILVGNPVFNYEAALPR-RITTPRY------TAYVKIAEGCDNNCTFCSIPIMRG 170 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259 SRS+ ++ E R+L + GV EI+L+ Q+ + G+D + +LL +S I+G Sbjct: 171 KFRSRSMESILAEVRQLSEQGVKEISLIAQDSTNY---GIDLYDSYVLPELLNKVSAIEG 227 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + +R ++P +D LI+ + Y+ LP+Q D +LK M R + R++I Sbjct: 228 IEWVRLHYAYPGFFTDELIETIATNPKICKYIDLPLQHSEDSVLKRMRRPGRQKDARELI 287 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 +IRS PD A+ + IVGFPGET++DF++ +D V +I Sbjct: 288 RKIRSRIPDAALRTSIIVGFPGETEEDFQSLVDFVKEI 325 >gi|149204848|ref|ZP_01881810.1| MiaB-like tRNA modifying enzyme [Roseovarius sp. TM1035] gi|149141718|gb|EDM29773.1| MiaB-like tRNA modifying enzyme [Roseovarius sp. TM1035] Length = 419 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 125/439 (28%), Positives = 208/439 (47%), Gaps = 51/439 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ G + +++NTC + +A K + R+R Sbjct: 9 TLGCRLNAYETEAMKELAGQAGL--------GNAVIVNTCAVTSEAVRKARQEIRRLR-- 58 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPE--LLER 142 +E + ++V GC AQ E E P V+ V+G T+ RL + E Sbjct: 59 -----RENPEARLIVTGCAAQTE-PETFAAMPEVDAVIGNTEKMAADTWARLAGDFIGET 112 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R +VD SV + L +DG +R R A++ +Q GCD CTFC++PY RG Sbjct: 113 ERV---LVDDIMSVRETAGHL--IDGFGSRSR---AYVQVQNGCDHRCTFCIIPYGRGNS 164 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S VV++ ++L+ G E+ L G ++ +W G L ++ L + L R Sbjct: 165 RSVPAGVVVEQIKRLVGAGYNEVVLTGVDLTSW-GADLPAAPKLGDLVMRILRLVPDLPR 223 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ + L++A LMP+LHL +Q G D ILK M RRH + + + Sbjct: 224 LRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFAEEA 283 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RP++ +D I GFP ET+ F ++ LV++ F YSPR GTP + M + Sbjct: 284 RRLRPEMTFGADIIAGFPTETEAAFENSLRLVEECHLTWLHVFPYSPRPGTPAARMPQ-- 341 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-----VGRSPWLQS 437 VK ++ + A G++ L + G+E L +GR+ Sbjct: 342 ---VKG-------PAIKARAARLRAAGEGRVAAHLAAQQGREHAVLMEAPRMGRTEQFTE 391 Query: 438 VVLNSKNHNIGDIIKVRIT 456 VV + ++H G I++ R+T Sbjct: 392 VVFD-RDHPEGQIVRARVT 409 >gi|325298142|ref|YP_004258059.1| MiaB-like tRNA modifying enzyme [Bacteroides salanitronis DSM 18170] gi|324317695|gb|ADY35586.1| MiaB-like tRNA modifying enzyme [Bacteroides salanitronis DSM 18170] Length = 471 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 126/433 (29%), Positives = 213/433 (49%), Gaps = 29/433 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + M G V + AD+ ++NTC + E A +K + R+ Sbjct: 49 TLGCKLNFAETSTVGKMLKEAGVRTVRPGEKADICIVNTCSVTEVADKKCRQAIHRL--- 105 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 +K VVV GC AQ + E++ V++V+G + L + L E+ G+ Sbjct: 106 ----VKNHPGAFVVVMGCYAQLKPEQVADIEG-VDLVLGAEQKGDLMKYLGNLEKHAHGE 160 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 V +V+D + G +R R FL +Q+GCD FC++C +P+ RG + + Sbjct: 161 AVTT---AVKDIRTFVPSCSRG-DRTR---YFLKVQDGCDYFCSYCTIPFARGRSRNGKI 213 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++AR++ + G EI L G N+ + GK GE TF L+ +L +++G+ R R ++ Sbjct: 214 ADLVEQARQVAEEGGKEIVLTGVNIGDF-GK-TTGE--TFFSLVQALDKVEGIERYRISS 269 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D +I MP+ H+P+QSG D +LK M RR+ + + I+S P Sbjct: 270 IEPNLLTDEIIAFVAQSKRFMPHFHIPLQSGCDEVLKLMRRRYDTQLFASKVHTIKSYMP 329 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDE 384 D I D IVG GET + F + + + Q F YS R GT + + D+ Sbjct: 330 DAFIGVDVIVGTRGETPEYFEKAYEFIQGLDVTQLHVFSYSERPGTQALKIDYVVSPEDK 389 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + +++RLL L + E+ +F +GQ VL+E H K + G +P V L Sbjct: 390 HARSQRLLALSE---EKTHAFYARHIGQEATVLVE-HAKAGMPMHGFTPNYIRVELERNE 445 Query: 445 HNIGDIIKVRITD 457 +++VR+ D Sbjct: 446 ALDNQMVRVRLGD 458 >gi|15895089|ref|NP_348438.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824] gi|81530279|sp|Q97I40|RIMO_CLOAB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|15024787|gb|AAK79778.1|AE007690_5 Predicted Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824] gi|325509227|gb|ADZ20863.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018] Length = 445 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 130/441 (29%), Positives = 226/441 (51%), Gaps = 25/441 (5%) Query: 26 RFFVKSYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +F + S GC N DS + + M ++ YE VN +AD+I++NTC E A ++ + + Sbjct: 5 KFGLVSLGCDKNRVDSEIILGSM--NRDYEIVNDPREADVILVNTCGFIESAKQESINTI 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L+ ++ KE + +++A GC+ Q G+E+ P ++ ++G Y L + +E Sbjct: 63 -----LEMNKYKEKYNCKMLIATGCLTQRYGKELKELVPEIDAILGVNDYKSLDDAIEDF 117 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 GK+ + +YS + E I+ G ++++ I EGC+ C++C++P RG Sbjct: 118 FNLGKKDIYCNYSDQSINEGKRIITTG-----EYSSYVRISEGCNNSCSYCIIPKIRGKY 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR ++DE R+L +NG E+ L+ Q+ + G L G K +LL +S I+G+ Sbjct: 173 RSRQFENIIDEVRELSENGTKEVILIAQDTTRY-GVDLYGRK-RLHELLKEMSLIQGIEW 230 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R +P ++++ LI+ + + Y+ +P+Q SD ILK+M R+ E +++I Sbjct: 231 IRIMYCYPEEITEELIEEIASNEKVCNYIDMPIQHISDNILKNMFRKTRKSEILDKVEKI 290 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P+IAI + IVGFPGET+ DF D V F+YS GT + M Q+ Sbjct: 291 RKKVPNIAIRTSLIVGFPGETEGDFNELCDFVKDANINNLGVFRYSREEGTKAALMPMQI 350 Query: 383 DENVKAERLLCLQKKLREQQVS--FNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQSV 438 + VK +R + L +QQVS N +G++ +V++E + G+ +P + Sbjct: 351 ADTVKEKREEDIM--LIQQQVSKNLNAKKIGKVYKVIVEGFNGDYWYGRNFEMAPEIDGK 408 Query: 439 VLNSKNHNI--GDIIKVRITD 457 V I G I ++IT+ Sbjct: 409 VFFKSQSEIKVGSFINIKITE 429 >gi|332285816|ref|YP_004417727.1| hypothetical protein PT7_2563 [Pusillimonas sp. T7-7] gi|330429769|gb|AEC21103.1| hypothetical protein PT7_2563 [Pusillimonas sp. T7-7] Length = 438 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 139/467 (29%), Positives = 222/467 (47%), Gaps = 54/467 (11%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GY D+AD++V+NTC + A + Sbjct: 4 PKVGFV-SLGCPKALVDSERILTQLRTEGYAITPDYDNADVVVVNTCGFIDSAKAESLDA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS--PIVNVVVGPQTYYRLPELLE 141 +G I E G V+V GC+ EE L R P V V GPQ Y ++ Sbjct: 63 IGEA-------IAENGK--VIVTGCMGV---EESLIRDVHPAVLAVTGPQQYEQV----- 105 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R + S D + L G R A+L I EGC+ C+FC++P RG Sbjct: 106 -VRAVHEAAPPNLS-HDPYIDLVPPQGIKLTPRHY-AYLKISEGCNHRCSFCIIPSMRGN 162 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +SR + V+ EA +L+ GV E+ ++ Q+ +A W G+ + K + L Sbjct: 163 LVSRPIGDVMGEAERLVKAGVKELLVISQDTSAYGVDVKFRSGFWNGRPI---KTHMTQL 219 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L+ RL Y +P D +I D +L PYL +P Q S +ILK+M R Sbjct: 220 SEALAGFGVWTRLHYVYPYPH--VDEVIPLMADGKIL-PYLDIPFQHASPKILKAMKR-- 274 Query: 311 TAYEYRQI--IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 A+E R + I R PD+ + S FIVGFPGET++DF+ +D + + + F+YS Sbjct: 275 PAFEDRTLARIKNWRETCPDLTLRSTFIVGFPGETEEDFQYLLDWMTEAQLDRVGCFQYS 334 Query: 369 PRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 P G + + + V + VK E R + Q+ + +++ +G+ I+VLI++ + Sbjct: 335 PVEGARANELADHVPDEVKQERWDRFMAHQQAISTARLANK---IGREIDVLIDEIDDDG 391 Query: 426 --GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 G+ +P + V S + + GD+++VR+TD LY + + Sbjct: 392 AIGRSSADAPEIDGNVFVSSDKVLKPGDMVRVRVTDSDEYDLYADAI 438 >gi|167626684|ref|YP_001677184.1| ribosomal protein S12 methylthiotransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|238065359|sp|B0U054|RIMO_FRAP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|167596685|gb|ABZ86683.1| 2-alkenal reductase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 439 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 130/454 (28%), Positives = 216/454 (47%), Gaps = 46/454 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC N+ DS R+ ++GY+ V+S D+AD++++NTC A ++ Sbjct: 4 IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G I E G +LV GC+ + + I + V + GPQ Y L +E Sbjct: 63 VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHSEVLSITGPQDYENL---IEA 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + D+ + + + Y ++L I EGC+ CTFC++P RG Sbjct: 110 VHTHAPIFVNDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-------RGKGLDGE-KCTFSDLLYSL 254 SRS+ ++ EA KL + GV E+ ++ Q+ +A+ G D E + DL +L Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNDKEYQSNILDLATAL 222 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 ++ RL Y +P + A G + +PYL +P+Q S +LK M R + Sbjct: 223 GDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVPLQHSSPEVLKRMKRPAHTQK 279 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 I++ R + PDI I S FIVGFPGET+ DF +D +K + FKYS G Sbjct: 280 TLDRINKWRDICPDITIRSTFIVGFPGETEADFEHLLDFAEKAQLDRVGCFKYSEVEGAK 339 Query: 375 GSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 + + E VK +RL + LQ ++ ++ VG +V+I+ K++ +GR Sbjct: 340 ANQFDNLISEEVKQQRLDEFMGLQAQISADKLQ---RFVGTEQQVIIDVINKDENYAIGR 396 Query: 432 SPWL------QSVVLNS--KNHNIGDIIKVRITD 457 + + Q ++ ++ +N +G+ V IT+ Sbjct: 397 TKYDAPEVDGQVIIGDALERNLKVGEFATVEITE 430 >gi|213158375|ref|YP_002319673.1| hypothetical protein AB57_2321 [Acinetobacter baumannii AB0057] gi|301346284|ref|ZP_07227025.1| ribosomal protein S12 methylthiotransferase [Acinetobacter baumannii AB056] gi|301595689|ref|ZP_07240697.1| ribosomal protein S12 methylthiotransferase [Acinetobacter baumannii AB059] gi|238065267|sp|B7I9V4|RIMO_ACIB5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|213057535|gb|ACJ42437.1| conserved hypothetical protein [Acinetobacter baumannii AB0057] Length = 447 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 133/467 (28%), Positives = 219/467 (46%), Gaps = 50/467 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ + GY+ + D ADL+V+NTC E A ++ Sbjct: 4 PKVGFV-SLGCPKALVDSERILTQLKTDGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + +N R V+V GC+ + E ++I + P V V G Y + E + Sbjct: 63 IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + F L + + G A+L I EGC+ CTFC++P RG + Sbjct: 113 VPAP-------PKHNPFIDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V++EA L GV EI ++ Q+ +A W G+ + K F D+ Sbjct: 165 SRPVGSVLEEAAALKRAGVKEILVISQDTSAYGVDTKYKLDFWNGQPV---KTKFFDMCE 221 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +L ++ VRL Y +P + + A G + +PYL +P Q S R+LK M R + Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGKI---LPYLDIPFQHASPRVLKLMKRPAHS 278 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I R P++ I S F+VGFPGET++DF+ +D + + + F YSP G Sbjct: 279 ENTLEKIKLWREKCPNLVIRSTFVVGFPGETEEDFQILLDWLVEAQLDRVGCFTYSPVEG 338 Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 +++ + V E +K ER + +Q+++ ++ +GQ + VL++ E V Sbjct: 339 ATANDLPDHVPEEIKQERYERFMQVQQQISAAKLQKR---IGQTMTVLVDSLEDEYPVAV 395 Query: 430 GRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 RS P + V ++ GD+++V ITD L+ +L+ Sbjct: 396 ARSYADAPEIDGNVFVEDIDKSTIQPGDMLEVEITDADEYDLFAKLI 442 >gi|296242700|ref|YP_003650187.1| RNA modification enzyme, MiaB family [Thermosphaera aggregans DSM 11486] gi|296095284|gb|ADG91235.1| RNA modification enzyme, MiaB family [Thermosphaera aggregans DSM 11486] Length = 427 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 117/440 (26%), Positives = 217/440 (49%), Gaps = 43/440 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R +V++YGC +N D M+ + +G+ V++ +AD++++NTC +R + + + + Sbjct: 2 RVYVETYGCALNRSDEALMKHVLIERGHTIVDNPSNADVVIINTCTVRLDTEQHMLNRIS 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +R L +R G L +VAGC+ A+ ++ + +P ++V PQ R+ Sbjct: 62 SLRELTQAR---KGKL--IVAGCLPAAQPYKVAKTAPEASLV-SPQNSSRI--------- 106 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKR------GVTAFLTIQEGCDKFCTFCVVPYTR 199 Y + R+ ++DG R R A + IQEGC C+FC+ + R Sbjct: 107 --------YVAVESDGRVVMLDGVRERDRIGLCFENKVAPIPIQEGCLSNCSFCITKHAR 158 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 + +S ++ +V + G EI L G ++ + G L G++ +L+ +S + G Sbjct: 159 RVLVSHTVEAIVKSVETAVRMGAVEIQLTGMDLGTY-GMELYGKR-YLPELVRRVSTLPG 216 Query: 260 LVRLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 R+R +P + D L++A + +LH+P+QSGSD++LK+MNR++T EYR Sbjct: 217 EFRVRIGMINPEHLPPILDELLEAVKSDRRIYRFLHIPLQSGSDKVLKAMNRKYTVDEYR 276 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +I ++ D++I++D IVG P E ++DF T+ ++ ++ + + YS R T + Sbjct: 277 GLIKEVKQKISDVSIATDIIVGHPLEDEEDFEETLKIIRELEFERVHFAGYSVRPNTLSA 336 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 M + ++ ER+L + + + E + +G + V I ++ VGR Sbjct: 337 GM-PNIPTRIRKERMLRMLETVEEVGFKVREKYIGLTLPVFITEYS---NTWVGRLDNYI 392 Query: 437 SVVLNSKNHNIGDIIKVRIT 456 V+L GD +K IT Sbjct: 393 PVILME-----GDSLKYGIT 407 >gi|310827655|ref|YP_003960012.1| hypothetical protein ELI_2066 [Eubacterium limosum KIST612] gi|308739389|gb|ADO37049.1| hypothetical protein ELI_2066 [Eubacterium limosum KIST612] Length = 446 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 125/439 (28%), Positives = 206/439 (46%), Gaps = 19/439 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + + GC N D+ +M M GY A++IV+NTC + A E+ ++ Sbjct: 2 KKIHITTLGCDKNTVDAQQMLGMLAENGYTIEPDPARAEVIVVNTCCFIQAAKEESIEYI 61 Query: 85 GRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L+ + KE G +++ AGC+A+ +E+ P V+ +G + +L++ Sbjct: 62 -----LEYAGYKESGPCEILIAAGCMAERYHKELAEEMPEVDGFLGVGHIDNIIDLIKDI 116 Query: 144 RFGKRVVDTDYSVEDKF-ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ +++ + E + Y VTA+L I EGCD CT+CV+P RG Sbjct: 117 EGGRGREAFSGNIDRPYVEEMP----RYIEDNTVTAYLKISEGCDHHCTYCVIPKIRGRH 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SRS + EA L GV E+ ++ Q++ + G L+GE + LL LSE Sbjct: 173 RSRSPEAIYKEAAYLEKKGVRELIIIAQDITQY-GNDLEGE-INLAGLLTRLSEDFSFRW 230 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R +P +++ L+ D L Y +P+Q D+ILK M R + I I Sbjct: 231 IRLLYMYPEGITEELLDVIASHDNLCHYFDIPIQHTEDKILKRMGRPVNKKHLFEQIGLI 290 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PD + + I GFPGET++D + + + + FKYS GTP + +QV Sbjct: 291 REKLPDAVLRTAIITGFPGETEEDHEGLLASLRALKINRLGVFKYSQEEGTPAAEFPDQV 350 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGKEKGKLVGRSPWLQSVV 439 DE V R + + N+A VG+ ++VLIE+ G G+ G +P + +V Sbjct: 351 DEAVMERRWNEIYGQQEGITAEANEAFVGRSLDVLIEEMEAPGTYSGRTYGDAPEIDCMV 410 Query: 440 LNSKNH---NIGDIIKVRI 455 + +IG+ KV+I Sbjct: 411 FANSGEEVLDIGNFYKVKI 429 >gi|242281025|ref|YP_002993154.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio salexigens DSM 2638] gi|242123919|gb|ACS81615.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio salexigens DSM 2638] Length = 437 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 121/414 (29%), Positives = 198/414 (47%), Gaps = 26/414 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84 R + S GC N D+ RM F ++ +++DL+++NTC I E V + L Sbjct: 7 RIYTISLGCPKNRVDTERMLGAF-GDNMIAASTAEESDLVLINTCGFIGPATEESVDTIL 65 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +K+ + ++ VAGC+ G+ + + P V++ + + P L +A Sbjct: 66 ETADAIKDLNPRP----VLAVAGCLVSRYGK-LTEQMPEVDLWLSTHELDQWPALAAKA- 119 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + ++ V ++ +I G A+L I EGC C FC +P RG +S Sbjct: 120 -----LRKEFPV---VQQRAISTGP------AYAYLKISEGCSHSCRFCTIPSIRGPHVS 165 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R L +V+EAR ++D GV E+ ++GQ+ A+ G LD ++ L+ L +KG+ LR Sbjct: 166 RKLDGLVEEARYILDQGVPELVIVGQDTTAY-GSDLDDKETNLRALIEKLLPLKGMEWLR 224 Query: 265 YTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 +P ++D ++ L+PY +P+Q +L SM R A + R++IDR+R Sbjct: 225 LMYLYPAGLTDSMLSFLAQAGKPLLPYFDIPIQHAHPDVLSSMGRPF-ARDPRKVIDRVR 283 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PD + + IVG+PGETD+ F +D V + + F Y P GTP M EQ+ Sbjct: 284 KHIPDAVLRTSIIVGYPGETDEHFNTLVDFVKETRFQNLGVFAYQPEEGTPAGEM-EQLP 342 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 E ++ ER L + E + VG I+VL+E+ E L W Q+ Sbjct: 343 EELREERREILMEVQSEISREILEEKVGDTIQVLVEEPNDEWPGLFNGRVWFQA 396 >gi|330936758|gb|EGH40924.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. pisi str. 1704B] Length = 477 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 146/471 (30%), Positives = 232/471 (49%), Gaps = 65/471 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 10 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ + I P V V GPQ Y Sbjct: 69 IGEA-------IKENGK--VIVTGCMG-VDASVIRNVHPSVLSVTGPQQY---------- 108 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDL 250 RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A +R DG+ K ++L Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTEL 225 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L + VRL Y +P + A G ++PYL +P Q S +ILK M R Sbjct: 226 CQALGSMGVWVRLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR-- 280 Query: 311 TAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 A+E + + RI++ R PD+ I S FIVGFPGET++DF+ +D + + + F+Y Sbjct: 281 PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQY 339 Query: 368 SPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 SP G P +N+L+ V ++VK +R + Q+ + ++ +G+ IEVLI++ Sbjct: 340 SPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLIDEV- 394 Query: 423 KEKGKLVGR----SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYG 465 ++G VGR +P + V + GD I R+TD L G Sbjct: 395 DDRGA-VGRCFFDAPEIDGNVFIGLEDGSTVQPGDKIMCRVTDADEYDLVG 444 >gi|299531587|ref|ZP_07044992.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni S44] gi|298720303|gb|EFI61255.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni S44] Length = 468 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 134/484 (27%), Positives = 215/484 (44%), Gaps = 67/484 (13%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 Q +P+ FV S GC + DS + ++GY+ + + ADL+++NTC + A ++ Sbjct: 11 QTAIPKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFIDDAVKE 69 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-----ILRRSPIVNVVVGPQTYY 134 +G V+V GC+ G+E + P V V GP Sbjct: 70 SLDTIGEALAANGK---------VIVTGCLGAKAGKEGGSTMVAEVHPSVLAVTGPHAT- 119 Query: 135 RLPELLERARFGKRVVDTDYS----VEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCD 187 + V+D ++ D F L S D G A+L I EGC+ Sbjct: 120 ------------QEVMDAVHTHLPKPHDPFVDLVPGSFGDAGIKLTPKHYAYLKISEGCN 167 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WR 236 CTFC++P RG +SR + V+ EA+ L + GV E+ ++ Q+ +A W Sbjct: 168 HRCTFCIIPSMRGDLVSRPIGDVLKEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFWD 227 Query: 237 GKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295 GK + +D L L++ G VRL Y +P + + A G + +PYL +P+ Sbjct: 228 GKPVKTRMLELADELGKLAQQHGAWVRLHYVYPYPTVDAVLPLMAEGKI---LPYLDVPL 284 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMD 352 Q +LK M R + + +DRIR R P++ I S FI GFPGET+++F +D Sbjct: 285 QHSHPDVLKRMKRPASG---EKNLDRIREWRKICPELVIRSTFIAGFPGETEEEFEHLLD 341 Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412 + + +A F YSP G + + + E V+ R + E VGQ Sbjct: 342 FIREAEIDRAGCFAYSPVEGATANELPGMLPEEVREARRARFMEVAEEVSTKRLQRRVGQ 401 Query: 413 IIEVLIEKH---GKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKIS 461 +++VL++K GK+ G+ +P + VV SK + +G++I VRI + Sbjct: 402 VMKVLVDKAVSLGKKGGMGRTYADAPEIDGVVHIQPPEKASKTYKVGELISVRIVGTQGH 461 Query: 462 TLYG 465 L G Sbjct: 462 DLVG 465 >gi|225619898|ref|YP_002721155.1| MiaB-like tRNA modifying enzyme [Brachyspira hyodysenteriae WA1] gi|225214717|gb|ACN83451.1| MiaB-like tRNA modifying enzyme [Brachyspira hyodysenteriae WA1] Length = 417 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 114/419 (27%), Positives = 214/419 (51%), Gaps = 32/419 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + ++GC++N Y+S ++ + G + +D+A+ I +NTC + + +K+ S+L ++ Sbjct: 5 IHTFGCRLNQYESEKISYELKNLG-ANITELDNAEAIAINTCTVTNDSDKKLMSYLEKLG 63 Query: 89 NLKNSRIKEGGDLLVVVAGC-VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 +++N + V + GC V++ + + + + N+V+ P ++ + Sbjct: 64 DIQNKK--------VFLIGCYVSKKDKDSSIFKD---NIVLIPNE--------KKEEASE 104 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + +T Y+ + I + + + A+L IQ+GC+ FCT+C+V RG S Sbjct: 105 IIFNTLYNNSNN----KIDNPIFFPQEQSRAYLKIQDGCNVFCTYCIVSRVRGSHRSVEP 160 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRLRY 265 S++ D + D EI L G N+ ++ + F+ +L ++ E K +R+R Sbjct: 161 SKIYDAVKMANDFNYKEIVLTGLNLGSYNY----NNEINFTKILQNILEYSSKYGIRIRL 216 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ P D LI + D+L P+ H+P+QSGS++ILK MNRR+T +Y I +++ Sbjct: 217 SSIEPIYFDDGLISLFKNDDILCPHAHIPLQSGSNKILKLMNRRYTREDYLNITEKLYKT 276 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 +++ISSD +VGFP E ++DF T +L +K + + F+YS R TP S M QV Sbjct: 277 NSNMSISSDVMVGFPHEDNNDFNDTYELCEKSKFIKIHIFRYSNRENTPSSKMDNQVGYR 336 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 K +R L + + S+ G+ ++++IEK + +G S L+S+N Sbjct: 337 TKLKRAKTLNNLNNKLKDSYYKNAEGRDLKIVIEK-ALQDNNYIGTSAEYLKCKLHSEN 394 >gi|187923838|ref|YP_001895480.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia phytofirmans PsJN] gi|238065311|sp|B2T3U5|RIMO_BURPP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|187715032|gb|ACD16256.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia phytofirmans PsJN] Length = 461 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 135/478 (28%), Positives = 220/478 (46%), Gaps = 63/478 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 13 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 71 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G N +N + V+V GC+ A G ++ P V V GP + L E+ Sbjct: 72 IGEALN-ENGK--------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGP---HALGEV 119 Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++ V T D F L G R A+L I EGC+ CTFC++P Sbjct: 120 MQH-------VHTHLPKPHDPFVDLVPAAGVKLTPRHY-AYLKISEGCNHRCTFCIIPSM 171 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR ++ V+ EA L +GV E+ ++ Q+ +A W GK + K Sbjct: 172 RGDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRM 228 Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPVQS 297 +DL+ +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 229 TDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPYKGH-----VLPYLDVPFQH 283 Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 +LK M R A + + + + R + PD+ I S FI GFPGET++ F+ +D + + Sbjct: 284 AHPEVLKRMKRPANAEKVMERVKKWREMCPDLTIRSTFIAGFPGETEEQFQTLLDFIREA 343 Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417 + F YSP G + + + + V+ ER + E VG+ ++VL Sbjct: 344 ELDRVGCFAYSPVEGATANELDGALPDEVREERRARFMEVAEEVSAKRIAKKVGKTLKVL 403 Query: 418 IEKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 +++ + G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 404 VDEINADGGIGRTAADAPEIDGVVYIAPAAKASKRYKVGDFVSVKITGADGHDLWGEV 461 >gi|313892874|ref|ZP_07826451.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella sp. oral taxon 158 str. F0412] gi|313442227|gb|EFR60642.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella sp. oral taxon 158 str. F0412] Length = 448 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 125/439 (28%), Positives = 218/439 (49%), Gaps = 27/439 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89 S GC N+ D+ M + GY + +ADLIV+NTC EKA AE + + L + Sbjct: 9 SLGCAKNLVDTEVMLGLLRDNGYTITEDLSEADLIVVNTCTFIEKAKAESINTILEVAQY 68 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 ++ R K ++VAGC++Q +E+ + P ++ ++G + ++ ++ G R Sbjct: 69 KEDGRCKG-----LIVAGCLSQQYQDELFQEIPEIDALIGTGAWDQIMVAVDAIEHGNRS 123 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + ER+ + +A++ I EGC+ CTFC++P RG SR++ Sbjct: 124 CIMENITNIYDERMPRI----QTTPRYSAYVKIAEGCNNGCTFCIIPKVRGAFRSRTIES 179 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 + E +L +GV E+ L+ Q+ ++ G L+ K + LL L+ ++G+ +R + Sbjct: 180 IKAEVERLAASGVKEVVLIAQDTTSY-GIDLNDGKPLLTTLLRELTTVEGIEWIRMLYLY 238 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P SD L+ + L Y+ +P+Q ++ ILK MNRR + +++ +IR+ I Sbjct: 239 PTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDDRSDIERLLKKIRNAPTHI 298 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 + + IVGFPGETD+ F D V +I + F YS GTP +QV E +K E Sbjct: 299 TLRTSIIVGFPGETDEQFEELCDFVKEIKFDNMGVFTYSQEEGTPAGAREDQVPEEIKEE 358 Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-------EKGKLVGRSPWLQ-SV 438 R L+ +Q + E+ N G I ++E+ + KG+L ++P + ++ Sbjct: 359 RYHVLMSIQAAISEEN---NRDLEGTIDYAMVEEIEEGDNNTLLAKGRLKSQAPDVDGNM 415 Query: 439 VLNSKNHNI--GDIIKVRI 455 + +I GDI+KV++ Sbjct: 416 YIEDCGEDIKPGDILKVQV 434 >gi|326386508|ref|ZP_08208131.1| hypothetical protein Y88_2403 [Novosphingobium nitrogenifigens DSM 19370] gi|326209169|gb|EGD59963.1| hypothetical protein Y88_2403 [Novosphingobium nitrogenifigens DSM 19370] Length = 469 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 136/463 (29%), Positives = 213/463 (46%), Gaps = 51/463 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ + GY+ D AD++++NTC + A E+ + +G Sbjct: 25 SLGCPKALVDSERILTRLRADGYQMSADYDGADVVLVNTCGFLDSAKEESLAAIGEA--- 81 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I E G V+V GC+ E E I R P V V G Y + + + A Sbjct: 82 ----IAENGR--VIVTGCMGN-EAELIRARFPDVLAVTGAHQYEDVVDAVHAAAPPGLGP 134 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D + + + Y+ +L I EGC+ CTFC++P RG SR + V Sbjct: 135 YVDLIPQSAPGDVKLTPRHYS-------YLKISEGCNHACTFCIIPQLRGKLASRRIDAV 187 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA KL+ G E+ ++ Q+ +A W+G + + L L G Sbjct: 188 LREAEKLVAAGTRELLVISQDTSAYGVDVGHEERLWKGHPVRTHMTDLARELGGLRTPDG 247 Query: 260 ---LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 VRL Y +P + + A G +L PYL +P Q S +L++M R A E + Sbjct: 248 QVPWVRLHYVYPYPHVEAVIPLMAEG---LLTPYLDIPFQHASPSVLRAMKR--PANEAK 302 Query: 317 QIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 +++R+RS R PD+AI S F+VGFPGET+DDFR +D +++ + +F++ P G Sbjct: 303 -VLERLRSWREICPDLAIRSSFVVGFPGETEDDFRYLLDWLEEAQLDRVGAFRFEPVAGA 361 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKL--V 429 +++ V E VK ER L +K + +A VG+ + V+I++ G+ E+G + Sbjct: 362 VANDLPGAVPEEVKEERYARLMEKTEAISRARLEAKVGRTLRVIIDEVGEPDEEGDIGAT 421 Query: 430 GRS----PWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465 GRS P + V GD + V + D LYG Sbjct: 422 GRSQADAPEIDGAVYLRDVPATLAPGDFVDVVVEDADAHDLYG 464 >gi|264677765|ref|YP_003277671.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni CNB-2] gi|262208277|gb|ACY32375.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni CNB-2] Length = 468 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 137/486 (28%), Positives = 216/486 (44%), Gaps = 71/486 (14%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 Q P+ FV S GC + DS + ++GY+ + + ADL+++NTC + A ++ Sbjct: 11 QTATPKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFIDDAVKE 69 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-----ILRRSPIVNVVVGPQTYY 134 +G V+V GC+ G+E + P V V GP Sbjct: 70 SLDTIGEALAANGK---------VIVTGCLGAKAGKEGGSTMVAEVHPSVLAVTGPHAT- 119 Query: 135 RLPELLERARFGKRVVDTDYS----VEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCD 187 + V+D ++ D F L S D G A+L I EGC+ Sbjct: 120 ------------QEVMDAVHTHLPKPHDPFVDLVPGSFGDAGIKLTPKHYAYLKISEGCN 167 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WR 236 CTFC++P RG +SR + V+ EA+ L + GV E+ ++ Q+ +A W Sbjct: 168 HRCTFCIIPSMRGDLVSRPIGDVLKEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFWD 227 Query: 237 GKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295 GK + +D L L++ G VRL Y +P + + A G + +PYL +P+ Sbjct: 228 GKPVKTRMLELADELGKLAQQHGAWVRLHYVYPYPTVDAVLPLMAEGKI---LPYLDVPL 284 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMD 352 Q +LK M R + + +DRIR R P++ I S FI GFPGET+++F +D Sbjct: 285 QHSHPDVLKRMKRPASG---EKNLDRIREWRKICPELVIRSTFIAGFPGETEEEFEHLLD 341 Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412 + + +A F YSP G + + + E V+ R + E VGQ Sbjct: 342 FIREAEIDRAGCFAYSPVEGATANELPGMLPEEVREARRARFMEVAEEVSTKRLQRRVGQ 401 Query: 413 IIEVLIEKH---GKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVK 459 +++VL++K GK+ G VGR+ P + VV SK + +G++I VRI + Sbjct: 402 VMKVLVDKAVSLGKKGG--VGRTYADAPEIDGVVHIQPPEKASKTYKVGELISVRIVGTQ 459 Query: 460 ISTLYG 465 L G Sbjct: 460 GHDLVG 465 >gi|226939871|ref|YP_002794944.1| oxidoreductase [Laribacter hongkongensis HLHK9] gi|226714797|gb|ACO73935.1| Probable oxidoreductase [Laribacter hongkongensis HLHK9] Length = 473 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 136/465 (29%), Positives = 213/465 (45%), Gaps = 57/465 (12%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R V S GC D+ ++ ++GYE +S D+ADL+V+NTC + A + +G Sbjct: 11 RIGVVSLGCPKASVDTEQILTRLRAEGYELSSSYDNADLVVVNTCGFIDDAVAESLDAIG 70 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLER-- 142 +KE G V+V GC+ EG ++R P V V G + E+L Sbjct: 71 EA-------LKENGK--VIVTGCLGAREGGNMVRDVHPSVLAVTG---AHATDEVLAHVH 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A K D F + +V G G A+L I EGC+ CTFC++P RG Sbjct: 119 AHLPKP--------HDPF--VDLVPGTGVRLTPKHYAYLKISEGCNHRCTFCIIPQLRGD 168 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +SR + V+ EA L GV E+ ++ Q+ +A W+G+ + + +L Sbjct: 169 LVSRPVHDVLQEAENLAKGGVRELLVVSQDTSAYGVDLKYRTGFWQGRPI---RTRLLEL 225 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L ++ RL Y +P + A G +++PYL +P Q S ++LK+M R Sbjct: 226 SRELGQMGMWTRLHYVYPYPSVDEIIPLMAEG---LVLPYLDIPFQHASQKVLKAMQRPA 282 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + I + R + PD+A+ S FIVGFPGET+DDF+ + +++ + F YS Sbjct: 283 NSENVLARIKKWRDICPDLALRSTFIVGFPGETEDDFQELLGFLEEAQLDRVGCFTYSNV 342 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN----DACVGQIIEVLIEKHGKEKG 426 G P M Q+ E +K ER Q + E Q + A VG+ ++V++++ E Sbjct: 343 DGAPAKAMDGQIPEEIKQER----QARFMEVQARISAARLAAKVGRTLDVIVDEVDSEAD 398 Query: 427 KLVGRS----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465 L RS P + V N GDI+ V++ D L+ Sbjct: 399 GLACRSRYDAPEIDGNVYIDGVGNARPGDILTVKVVDADEHDLWA 443 >gi|86359534|ref|YP_471426.1| hypothetical protein RHE_CH03954 [Rhizobium etli CFN 42] gi|86283636|gb|ABC92699.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 423 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 118/400 (29%), Positives = 188/400 (47%), Gaps = 30/400 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M+ G + +++NTC + +A + Sbjct: 6 VITFGCRLNTYESEVMKAQAEKAGLN--------NAVLVNTCAVTGEAVRQARQ------ 51 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142 ++ ++V GC AQ E E + V+ V+G + +Y LP+ Sbjct: 52 -AIRRARRDNPHARIIVTGCAAQTEKETFAAMAE-VDAVLGNEEKLSSASYRSLPDFGVS 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A RV D + + +DG V AF+ +Q GCD CTFC++PY RG Sbjct: 110 AEEKLRVNDIMSVKTTAPQMIRHIDGH------VRAFIQVQSGCDHRCTFCIIPYGRGNS 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + VVD+AR+L D+G EI L G + ++ G L G L +I + R Sbjct: 164 RSVPMGAVVDQARRLADSGYREIVLTGVDATSY-GSDLPGTPTLGLLAKTLLKQIPDIRR 222 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ + L+ + MP+LHL +Q G D ILK M RRH+ + + I+ + Sbjct: 223 LRLSSIDSIEADAHLMDLIAEEPRFMPHLHLSLQHGDDMILKRMKRRHSRADALRFIEDV 282 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RP+++ +D I GFP ET++ F + L ++ G A F YSPR GTP + M Q+ Sbjct: 283 RRLRPEMSFGADMIAGFPTETEEMFANAVRLAEEAGIAHLHVFPYSPRPGTPAARM-PQL 341 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 D ++ +R L+ S D VG +L+E +G Sbjct: 342 DRSLVKDRAARLRDTGHRLHQSHLDGMVGTRQWLLVENNG 381 >gi|293977855|ref|YP_003543285.1| MiaB family RNA modification protein [Candidatus Sulcia muelleri DMIN] gi|292667786|gb|ADE35421.1| RNA modification enzyme, MiaB family [Candidatus Sulcia muelleri DMIN] Length = 429 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 108/359 (30%), Positives = 183/359 (50%), Gaps = 19/359 (5%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N ++ + + F +GYE V + ADL ++NTC + K AEK L RI Sbjct: 11 GCKLNFAETDTIINKFLKKGYEYVKFISYADLYIINTCSV-TKNAEKELKKLVRIA---- 65 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 I + +V GC +Q +EI + I ++++G + + + L++ K + Sbjct: 66 --INNNVNAFIVAIGCYSQVNPKEISLINGI-DLIIGSKEKFNIINHLKKIYKNKFI--- 119 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 S++DK +I Y+R ++L IQ+GCD C++C +P RG IS ++ ++ Sbjct: 120 --SLKDK----NIYIPSYSRLNRTRSYLKIQDGCDYKCSYCTIPKARGFSISDNIKNIIF 173 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV-RLRYTTSHPR 271 A+ LI G+ EI L G N+ + GK E + + +IK + R+R ++ P Sbjct: 174 YAKNLIKQGIKEIVLTGVNIGDY-GKHNLLELIQAMESSLNEDDIKNFIKRIRISSIEPN 232 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 +SD +I + + + H+P+QSGSD IL M RR++ Y + I +I ++ P I Sbjct: 233 LLSDDIINFIYKSKIFVNHFHIPLQSGSDEILNQMKRRYSKNLYLERIKKILNIMPFACI 292 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 SD IVGFPGE + +F T L+ +I + F YS R+ T M + + ++ +R Sbjct: 293 GSDVIVGFPGEKEKNFIETYSLLSEINISYLHVFSYSERINTKAFIMNNSITKKIRYKR 351 >gi|218264310|ref|ZP_03478167.1| hypothetical protein PRABACTJOHN_03858 [Parabacteroides johnsonii DSM 18315] gi|218222111|gb|EEC94761.1| hypothetical protein PRABACTJOHN_03858 [Parabacteroides johnsonii DSM 18315] Length = 440 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 125/428 (29%), Positives = 203/428 (47%), Gaps = 26/428 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + QG + + AD+ V+NTC + E A +K + RI Sbjct: 16 TLGCKLNFAETSTIGKVLAEQGVRKARPSEKADICVVNTCSVTELADKKCRQAIRRIG-- 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--LERARFGKR 148 K+ +VV GC AQ + EE+ + V+ Q L L L++ G Sbjct: 74 -----KQHPGAFIVVIGCYAQLKPEEVSHIEGVDLVLGAEQKLDILMYLDDLKKKEEGGA 128 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V+ + F D +R R FL +Q+GCD FC++C +P+ RG + +++ Sbjct: 129 VIASQTKDIRSFSPSCSAD---DRTR---HFLKVQDGCDYFCSYCTIPFARGRSRNGTIA 182 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V +A ++ +G EI L G N+ + GK GE TF DL+ +L E++G+VR R ++ Sbjct: 183 SMVKQAEEVAASGGKEIVLTGVNIGDF-GKST-GE--TFIDLIRALDEVEGIVRYRISSI 238 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++D I P+ H+P+QSGSD +LK M RR+ +R I++I+ V P Sbjct: 239 EPNLITDEAIDFVAHSKHFAPHFHIPLQSGSDDVLKLMRRRYDTTLFRHKIEKIKEVMPH 298 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I D IVG GETD F ++ + +Q F YS R GT + VD K Sbjct: 299 AFIGVDVIVGTRGETDTYFEDARTFIESLDISQLHVFSYSERPGTQALKIDYVVDPKTKH 358 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRSPWLQSVVLN 441 R L + +F + +G+ VL E+ HG + + P+ S+V Sbjct: 359 ARSQQLLDISDRKLHTFYETHIGKQANVLFEQTRKGGMMHGFTENYIKVEIPYDSSLVNE 418 Query: 442 SKNHNIGD 449 ++ +GD Sbjct: 419 TRQVTLGD 426 >gi|260655525|ref|ZP_05861013.1| tRNA-I(6)A37 modification enzyme MiaB [Jonquetella anthropi E3_33 E1] gi|260629973|gb|EEX48167.1| tRNA-I(6)A37 modification enzyme MiaB [Jonquetella anthropi E3_33 E1] Length = 453 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 117/397 (29%), Positives = 197/397 (49%), Gaps = 51/397 (12%) Query: 2 GLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD 61 GLF+ L G A ++ GC++N ++ + F S G V S Sbjct: 4 GLFVSLAGTA---------------VRIEFLGCRVNAAEAEALASAFLSAGAS-VASDGP 47 Query: 62 ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121 D+ ++ TC I A K +GR+R + R L+V +GC AQ +E L + Sbjct: 48 FDVGIVVTCSITAMADRKSRQLIGRLRR-RCPRA------LLVASGCWAQG-ADEALAKK 99 Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKF--------ERLSIVDGGYNRK 173 ++++VG + L+ER + + Y++ ER S+ ++R Sbjct: 100 LGIDLLVGNGHKGEILALVERELSFRTSESSFYALRSPLAGVWDELDERTSVA---HSR- 155 Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233 AF+ +Q+GCD C++C+VP RG +SR L + V EAR+L++ G E+ L G ++ Sbjct: 156 ----AFIKVQDGCDCRCSYCIVPSLRGPSVSRPLERTVAEARRLVEAGRTELVLTGVHLG 211 Query: 234 AW---RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290 W G+GL +DL+ ++ + GL RLR + P + + I A L V P+ Sbjct: 212 QWGKESGRGL-------ADLIEAVGNVPGLKRLRLGSLEPFGIDERDIDAMASLTVFAPH 264 Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-IAISSDFIVGFPGETDDDFRA 349 LHLP+QSG D +L+ M R T+ ++ +++ ++R D + +S+D +V FPGETD+ F Sbjct: 265 LHLPLQSGDDGVLRRMRRPGTSGQFLELVKKLRRALGDGLHVSTDVMVAFPGETDEAFAR 324 Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 T++++ + + F +S R GTP + +QVD Sbjct: 325 TLEVLQEARIGRVHGFIFSIRPGTPAARFPDQVDRQT 361 >gi|268609957|ref|ZP_06143684.1| MiaB-like tRNA modifying enzyme YliG [Ruminococcus flavefaciens FD-1] Length = 443 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 126/451 (27%), Positives = 203/451 (45%), Gaps = 31/451 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS RM S GY+ V AD+ V+NTC + A E+ + L Sbjct: 9 SLGCSKNLVDSERMLYKLKSHGYQLVTEPGLADVAVVNTCGFIKSAKEEAIETI-----L 63 Query: 91 KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + ++KE G L +++ GC+ + EE + P + V+G + ++L+ +R Sbjct: 64 ELGKLKEEGTLKKIIITGCLVERYKEEAAEQFPEADAVIGIGNTKDIVDVLDHVLANERY 123 Query: 150 V------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 V D + S E L +L + EGC CT+C +P RG Sbjct: 124 VCFAPKLDAELSGERIISTLPFF-----------TYLKVAEGCSNCCTYCAIPLIRGKFR 172 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S + V+ EAR L +NGV E+ ++ Q+ A GK L GE ++LL L I GL + Sbjct: 173 SVPMEDVLKEARFLAENGVTELVVIAQD-TALYGKDLYGEP-KLAELLTELCRIDGLKWI 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R +P ++D L+ D ++ Y+ +P+Q + IL MNR + + IR Sbjct: 231 RTLYCYPERITDELLDVIAREDKIVKYMEIPIQHCNGDILSRMNRWGDTEKLEALFRHIR 290 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P + + + I GFPGET++ F + V ++ + + F YS GT + +Q+D Sbjct: 291 EKVPGVILRTTLITGFPGETEEQFNELAEFVKRVRFDRLGCFPYSREEGTKAAEFPDQID 350 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ-----SV 438 E A R + ++ N+ +G +E ++E K GR+P V Sbjct: 351 EETAAHRADIIMEQQMLISCENNEKLMGCELEAVVEGFDKFGECYFGRTPLDAPDIDGKV 410 Query: 439 VLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 S + IG + +RITD L GE++ Sbjct: 411 FFTSDDPLEIGQYVTIRITDTLDYDLIGEVI 441 >gi|291190604|ref|NP_001167148.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar] gi|223648364|gb|ACN10940.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar] Length = 562 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 134/459 (29%), Positives = 222/459 (48%), Gaps = 43/459 (9%) Query: 22 IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 ++P Q+ +++++GC N D M + GY+ +ADL +LN+C ++ A + Sbjct: 54 VIPGMQKIWMRTWGCSHNNSDGEYMAGQLAASGYKMTEDPAEADLWLLNSCTVKNPAEDH 113 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPE 138 F I+ + D VVVAGCV QA+ + L+ I+ V Q R+ E Sbjct: 114 ---FRNSIKKAQEQ------DKKVVVAGCVPQAQPRMDYLKGLSIIGV----QQIDRVVE 160 Query: 139 LLERARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 +++ A G V +D +RL + +D RK + ++I GC CT+C Sbjct: 161 VVDEAVKGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTK 219 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-S 255 + RG S + ++V+ AR+ GVCEI L ++ A+ GK + + T LL+ L Sbjct: 220 HARGDLASYPVEELVERARQSFQEGVCEIWLTSEDTGAY-GKDIGTDLPT---LLWRLVE 275 Query: 256 EIK-------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 EI G+ Y H +MS L + +LH+PVQS SD +L M R Sbjct: 276 EIPEGAMLRLGMTNPPYILEHLEEMSKILNHPR-----VYAFLHVPVQSASDSVLMDMKR 330 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + A ++R++ D ++ P I I++D I GFPGETD DF+ T DLV + + F ++ Sbjct: 331 EYCADDFRRVADFLKDKVPGITIATDIICGFPGETDADFQETCDLVKEYRFPSLFINQFY 390 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND--ACVGQIIEVLIEKHGKEKG 426 PR GTP + M +QV +K +R K+L S+N +G+ +VL+ + + Sbjct: 391 PRPGTPAAKM-DQVPAQLKKQRT----KELSALFHSYNPYHHKIGETQQVLVTEESFDAQ 445 Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 V + + + V++ ++ G +I+V I + L G Sbjct: 446 YYVAHNKYYEQVLVPKRSEFKGKMIEVEIFEAGKHFLKG 484 >gi|50084549|ref|YP_046059.1| ribosomal protein S12 methylthiotransferase [Acinetobacter sp. ADP1] gi|81393301|sp|Q6FCH4|RIMO_ACIAD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|49530525|emb|CAG68237.1| conserved hypothetical protein [Acinetobacter sp. ADP1] Length = 447 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 136/468 (29%), Positives = 220/468 (47%), Gaps = 52/468 (11%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GY+ + D ADL+V+NTC E A ++ Sbjct: 4 PKVGFV-SLGCPKALVDSERILTQLRTEGYQVASDYDGADLVVVNTCGFIESAVQESLDA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ER 142 +G + +N R V+V GC+ + E ++I + P V V G Y + E + E Sbjct: 63 IGEAMS-ENGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQDVMEAVHEY 112 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R + F L + + G A+L I EGC+ CTFC++P RG Sbjct: 113 VPAPPR--------HNPFVDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDL 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR + V++EA L GV E+ ++ Q+ +A W G+ + K F D+ Sbjct: 164 VSRPVGSVLEEAAALKRAGVKEVLVISQDTSAYGVDTKYKLDFWNGQPV---KTKFYDMC 220 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L ++ VRL Y +P + + A G ++PYL +P Q S RILK M R Sbjct: 221 EALGQLGIWVRLHYVYPYPHVDAVIDLMAQGK---ILPYLDIPFQHASPRILKLMKRPAH 277 Query: 312 AYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + +DRI+ R P++ I S F+VGFPGET++DF+ ++ + + + F YS Sbjct: 278 S---ENTLDRIKVWREKCPNLVIRSTFVVGFPGETEEDFQILLEWLKEAQLDRVGCFTYS 334 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 P G +++ + V E VK ER + +E + +GQ + VL++ E Sbjct: 335 PVEGATANDLPDHVSEEVKQERYERFMQVQQEISAARLQKRIGQTMTVLVDSLEDEYPVA 394 Query: 429 VGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 V RS P + V ++ G +++V ITD L+ +L+ Sbjct: 395 VARSYADAPEIDGNVFVEDIDKSLVQPGQLLEVEITDADEYDLFAKLI 442 >gi|150398286|ref|YP_001328753.1| MiaB-like tRNA modifying enzyme [Sinorhizobium medicae WSM419] gi|150029801|gb|ABR61918.1| MiaB-like tRNA modifying enzyme [Sinorhizobium medicae WSM419] Length = 424 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 121/401 (30%), Positives = 189/401 (47%), Gaps = 32/401 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M G + +++NTC + +A + Sbjct: 6 VITFGCRLNTYESEVMRAEAEKAGLN--------NAVLVNTCAVTAEAVRQARQ------ 51 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142 +E ++V GC AQ E E + V+ V+G + +Y LP+ Sbjct: 52 -AIRRARRENPHARIIVTGCAAQTEKETFAEMAE-VDAVLGNEEKLTSASYRSLPDFGVS 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A RV D + + +DG V AF+ +Q GCD CTFC++PY RG Sbjct: 110 AEEKLRVNDIMSVRATAPQMVKHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLV 261 S + VVD+AR+L++ G EI L G + ++ G L G T L +L ++ ++ Sbjct: 164 RSVPMGAVVDQARRLVEGGYREIVLTGVDATSY-GADLPGTP-TLGLLAKTLLKQVPEIL 221 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ + L+ + MP+LHL +Q G D +LK M RRH++ + R Sbjct: 222 RLRLSSIDSIEADVHLLDLIAEEPRFMPHLHLSLQHGDDLMLKRMKRRHSSADARAFCAE 281 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 + +RP+I+ S+D I GFP ET+ F+ + L + G A F YSPR GTP + M Q Sbjct: 282 VLRLRPEISFSADMIAGFPTETEAMFQNAVRLAEDCGLAHLHVFPYSPRPGTPAARM-PQ 340 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 +D + ER L+ K E + VG VL+E +G Sbjct: 341 LDRVLVKERAARLRAKGAELHTVHLERMVGSRQMVLVEMNG 381 >gi|312143618|ref|YP_003995064.1| MiaB-like tRNA modifying enzyme YliG [Halanaerobium sp. 'sapolanicus'] gi|311904269|gb|ADQ14710.1| MiaB-like tRNA modifying enzyme YliG [Halanaerobium sp. 'sapolanicus'] Length = 445 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 118/454 (25%), Positives = 225/454 (49%), Gaps = 29/454 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTC-HIREKAAEKVYSF 83 ++ + + GC N DS M+ S +E +N+ + A++I++NTC I++ E + + Sbjct: 3 KYSIMTLGCPKNEVDSQHMQGFLNSDSEFEYINNFEKAEVIIINTCGFIQDAKEESIDTI 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L + K + VVV GC+ Q EE+ ++ V+G + ++ E+++ + Sbjct: 63 LTALEYKKEHNCRS-----VVVTGCLTQRYSEELQDEIAEIDAVLGTSNFDKITEVIKES 117 Query: 144 RFGKRV-----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 GK+ DYS E V A+L I EGC+ C++C +P Sbjct: 118 LAGKKAGGIEEAGFDYSASLPREL----------DNNVFAYLKIAEGCNNNCSYCSIPQI 167 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG SR+++ ++ EA+K+ ++G+ E+ L+ Q+ + G + G + + LL L+E++ Sbjct: 168 RGGIKSRTIADIIREAKKIAESGIKELILIAQDTTQY-GIDIYG-RSALAPLLRKLTEVE 225 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ +R S+P +++ +I+ + D + YL LP+Q + +I K MNR+ + I Sbjct: 226 GIEWIRILYSYPEFITEEMIEVIAEEDKICNYLDLPIQHSAIKIRKLMNRKGDREDIANI 285 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I+ IR+ PD+ + + I GFPGE+ DF + + + + + F++S T N+ Sbjct: 286 INMIRNKIPDVKLRTSLISGFPGESQADFEDLKNFIKEFKFDRLGVFEFSLEEDTAAYNL 345 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--SPWLQ 436 ++ VK +R L + +E + N + Q +EV+IE+ + R SP + Sbjct: 346 PNRISPEVKKQRKEELLEIQQEISLEKNKGLLNQELEVIIEEKTDDHYLARSRFDSPEID 405 Query: 437 S---VVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 + + + + + IG+I + IT+ L GE+ Sbjct: 406 NQIYIPVANNDLKIGNIYRTFITEAYHYELKGEI 439 >gi|319953952|ref|YP_004165219.1| ssu ribosomal protein s12p methylthiotransferase [Cellulophaga algicola DSM 14237] gi|319422612|gb|ADV49721.1| SSU ribosomal protein S12P methylthiotransferase [Cellulophaga algicola DSM 14237] Length = 433 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 138/454 (30%), Positives = 225/454 (49%), Gaps = 47/454 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87 V + GC NVYDS + + + V+ + +++V+NTC I+ E V + L + Sbjct: 13 VVTLGCSKNVYDSEILMGQLKANKKDVVHE-GEGNIVVINTCGFIKNAKEESVNTILEFV 71 Query: 88 RNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + KE G + V V GC+++ ++ + P V+ G LP LL Sbjct: 72 QK------KEAGIVDKVFVTGCLSERYKPDLQKEIPNVDEYFGTT---ELPGLL------ 116 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + DY E ERL+ Y A+L I EGCD+ C+FC +P RG S Sbjct: 117 -KALGADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIPIMRGKHKSTP 168 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRL 263 + +V EA KL NGV E+ L+ Q++ + GLD +K ++LL +L ++ G+ +RL Sbjct: 169 IENLVIEAEKLAANGVKELILIAQDLTYY---GLDIYKKRNLAELLEALVKVDGIEWIRL 225 Query: 264 RYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 Y T P D+ + K + YL +P+Q SD ILKSM R T + +++ Sbjct: 226 HYAFPTGFPMDVLALMKKEPK----ICNYLDIPLQHISDAILKSMRRGTTKEKTTKLLYD 281 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R++ P++AI + IVG+PGET++DF+ V+++ + + F YS T +++ Sbjct: 282 FRALVPEMAIRTTLIVGYPGETEEDFQTLKAWVEEMRFERLGCFTYSHEENTHAYTLVDD 341 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437 V E+VK ER + + + N VGQ + ++++ KE +GR SP + + Sbjct: 342 VPEDVKQERASQIMEIQSQISWELNQEKVGQTLRCIVDR--KEGPHFIGRTEFDSPDVDN 399 Query: 438 VVL--NSKNH-NIGDIIKVRITDVKISTLYGELV 468 VL SK + +GD + + IT+ LYGE V Sbjct: 400 EVLIDASKFYLKVGDFVNINITEAADFDLYGEPV 433 >gi|303257047|ref|ZP_07343061.1| putative Fe-S oxidoreductase family 1 [Burkholderiales bacterium 1_1_47] gi|330999926|ref|ZP_08323624.1| ribosomal protein S12 methylthiotransferase RimO [Parasutterella excrementihominis YIT 11859] gi|302860538|gb|EFL83615.1| putative Fe-S oxidoreductase family 1 [Burkholderiales bacterium 1_1_47] gi|329573333|gb|EGG54945.1| ribosomal protein S12 methylthiotransferase RimO [Parasutterella excrementihominis YIT 11859] Length = 446 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 133/462 (28%), Positives = 214/462 (46%), Gaps = 40/462 (8%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P R S GC + DS R+ ++GY ++ D+DL+++NTC + A ++ Sbjct: 5 PPRVGFVSLGCPKALVDSERIVTELRAEGYLISSTYKDSDLVIVNTCGFIDAAVQESLEA 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 + + + E G V+V GC+ EG + R P + V GP+ + E+L Sbjct: 65 I-------SEALSENGK--VIVTGCLGGKNTEEGNFVALRFPKLLGVTGPE---QTEEVL 112 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + V D + F L + GG A+L I EGC+ CTFC++P RG Sbjct: 113 ------RLVHDNLPRPHEPFGDL-VPAGGVLLTPKHYAYLKIAEGCNHHCTFCIIPSLRG 165 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--------GLDGEKCTFSDLLY 252 +SR + VV EA L+ +GV E+ ++ Q+ A+ G K L Sbjct: 166 PLVSRPIGSVVREASNLVKSGVKELLVIAQDTAAYGQDVKYKLDFIGGRAVKTNIKVLFE 225 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L ++ VR Y +P D ++ + +L PYL +P Q RILK+M R + Sbjct: 226 ELGKLGVWVRPHYM--YPYASVDEIVPLMAEGKIL-PYLDVPFQHAHPRILKAMKRPGSE 282 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 Y + I+ R++ PDI I S FI GFPGET+++F+ +D + + + F YSP G Sbjct: 283 YNMER-INAWRAICPDITIRSTFITGFPGETEEEFQYLLDFLKEARLNRVGCFAYSPVEG 341 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 +++ + E+V+ ER + E VG+ I+VL+++ E G RS Sbjct: 342 AAANDLPGALPESVRVERRERFMEVQSEISKELLREKVGKTIKVLVDEAPDEDGIATARS 401 Query: 433 ----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 P + +V N N+ GD + V++TD L+ E+V Sbjct: 402 TADAPDIDGLVFIENNPNVKPGDFVDVKVTDSSDYDLFAEVV 443 >gi|78187264|ref|YP_375307.1| hypothetical protein Plut_1405 [Chlorobium luteolum DSM 273] gi|123730034|sp|Q3B317|RIMO_PELLD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|78167166|gb|ABB24264.1| SSU ribosomal protein S12P methylthiotransferase [Chlorobium luteolum DSM 273] Length = 440 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 130/450 (28%), Positives = 222/450 (49%), Gaps = 39/450 (8%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 F+ S GC N DS R++ + G ++A++I++NTC E A E+ + Sbjct: 11 FLLSLGCSKNTVDSERLQAQAEASGITFTQQAEEAEVILINTCGFIEDAKEESIMEILAA 70 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARF 145 ++KN+ G V V GC+ + E+ P V+ G + LP +L+ AR+ Sbjct: 71 VDMKNA----GTVRQVYVMGCLTELYRNELQEELPEVDRFFGTR---ELPAVLDALGARY 123 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + D S++ + +++L I EGC + C+FC +P RG +S+ Sbjct: 124 HQELYD----------HRSLLTPPH------SSYLKIAEGCSRACSFCSIPKIRGRYLSQ 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLR 264 + Q++ EAR L +NGV E+ L+ Q++ + G L G K +DLL LS+++ +RL Sbjct: 168 PMEQLLREARLLQENGVKELNLIAQDITVY-GVDLYG-KQMLNDLLMRLSDMEFRWIRLL 225 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y ++P +I G+ + YL LP+Q SD IL+SMNR T + ++I+ IR+ Sbjct: 226 Y--AYPVGFPLEVIDTIGNRSNICNYLDLPLQHCSDPILRSMNRGITKEQSLRLIEEIRN 283 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PDI + + I G+PGET +F ++ + + + F Y +P ++++ V E Sbjct: 284 RNPDIRLRTTMIAGYPGETRKEFEEMLEFAGSVRFDRLGCFPYRHEEHSPAYSLIDTVPE 343 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSPWLQSVVLN- 441 K ER+ L + E N+A VG ++ VL+++ G+E L+GR+ + V N Sbjct: 344 EEKQERVSELMELQEEIARKKNEAFVGSLMTVLVDRPEEGEEGLILIGRTEFDAPEVDNE 403 Query: 442 ------SKNHNIGDIIKVRITDVKISTLYG 465 S + G ++ RIT L+G Sbjct: 404 CLLESGSPEPSPGTFVQARITGSTAYELHG 433 >gi|51244669|ref|YP_064553.1| hypothetical protein DP0817 [Desulfotalea psychrophila LSv54] gi|81642781|sp|Q6AQ27|RIMO_DESPS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|50875706|emb|CAG35546.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 443 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 124/453 (27%), Positives = 224/453 (49%), Gaps = 24/453 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F + S GC N+ DS + G+E + D ADL+++NTC + A E+ + Sbjct: 2 KFHLISLGCAKNLVDSEVVLGCLRDAGWEMTDEQD-ADLLLVNTCGFIQPAVEEAVEEIL 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + ++K ++ +VV GC+ Q E++L P V++ VG + + E + + Sbjct: 61 ALVDIKADFPEKK----IVVLGCLVQRYKEQLLESLPEVDLFVGTEGVANIAEYVGKLIA 116 Query: 146 G----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G K ++ T++ + K R A++ I EGCD C++C++P RG Sbjct: 117 GEEQDKVIMPTEFLMTAKVPR-------QQSTPFFRAWVKITEGCDNRCSYCMIPSIRGP 169 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 SRS++ V++E + ++ +GV EI+L+ Q++ A+ G L G+ LL L + Sbjct: 170 LRSRSVADVLEEVQAMVASGVQEISLIAQDLTAY-GDDL-GDDVNLLVLLKELLAKTSVP 227 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R +P ++ D L++ ++ YL +P+Q +DR+L MNR + + + +D+ Sbjct: 228 WIRLLYLYPSELLDELLQLMAANPRIVKYLDIPIQHVNDRVLHLMNRPYGRADLEEFVDK 287 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R+ PDIA+ + F+VGFPGET++++ + + F YS G P + +Q Sbjct: 288 ARAHMPDIALRTTFLVGFPGETEEEYAEIGEFLRVRKLDHVGVFPYSNEEGAPSEHFPDQ 347 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQS--- 437 VD+ +K R L + +E VG + +VL+E +E L+ GR+ + + Sbjct: 348 VDDEIKESRCARLLELQQELSTEIQKKYVGTVQKVLVEGVSEETDLLLEGRTQYQAADVD 407 Query: 438 --VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V +N G+I+ + ITD + L G +V Sbjct: 408 GRVYINEGQVVAGEIVDILITDSQQYDLVGGVV 440 >gi|254252283|ref|ZP_04945601.1| 2-methylthioadenine synthetase [Burkholderia dolosa AUO158] gi|124894892|gb|EAY68772.1| 2-methylthioadenine synthetase [Burkholderia dolosa AUO158] Length = 453 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 133/477 (27%), Positives = 215/477 (45%), Gaps = 61/477 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 5 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G ++ P V V GP + + Sbjct: 64 IGEA-------LTENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQA 114 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + K D F L + G A+L I EGC+ CTFC++P R Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K + Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221 Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298 DL+ +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + + + + R + PD+ I S FI GFPGET+ F +D + + Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFDTLLDFIREAE 336 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YSP G + + + + V+ R + E VG+ ++VLI Sbjct: 337 LDRVGCFAYSPVEGATANELDGALPDEVREARRARFMEVAEEVSAKRIQRKVGKTLKVLI 396 Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ G E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 397 DEVGDEGGIGRTAADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 453 >gi|332829284|gb|EGK01938.1| MiaB-like tRNA modifying enzyme [Dysgonomonas gadei ATCC BAA-286] Length = 436 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 125/432 (28%), Positives = 206/432 (47%), Gaps = 25/432 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + G R + A++ V+NTC + E A +K + ++ Sbjct: 16 TLGCKLNFAETSAIGKQLSQVGVRRAREGEVAEICVINTCSVTEFADKKCRQAVRKL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 IKE V+V GC AQ + E+I + V+ Q + L E + K VV Sbjct: 73 ----IKENPGAYVIVTGCYAQLKPEDIAGIEGVDIVLGSEQKLDVVAYLDELKKKDKGVV 128 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 T S +K + +R R FL +Q+GCD FC+FC +P+ RG + ++ + Sbjct: 129 HT--SKTNKIKSFVPSCSQDDRTR---YFLKVQDGCDYFCSFCTIPFARGRSRNGTIESM 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V +A+++ G EI L G N+ + G+ GE TF DL+ +L E+ G+ R R ++ P Sbjct: 184 VKQAQEVAAKGGKEIVLTGVNIGDF-GR-TTGE--TFFDLIKALDEVDGIERYRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I P+ H+P+QSGSD +LK M RR+ +R +++I+++ PD Sbjct: 240 NLLTDEIIDFVSKSKRFAPHFHIPLQSGSDAVLKLMRRRYDTSLFRHKVEKIKAIMPDAF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I D IVG GETD+ F T ++ + ++Q F YS R T + +VD K R Sbjct: 300 IGVDVIVGTRGETDEYFEETKQFLEGLDFSQLHVFTYSERPNTQALKIEHEVDPKTKHAR 359 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPWLQSVVLNS 442 L + +F + G +VL E H + ++ G +P+ S Sbjct: 360 CKVLLDLSDNKLEAFYRSQQGTQRKVLFE-HAQHDDRMYGFTENYVKIETPYQASKANEI 418 Query: 443 KNHNIGDIIKVR 454 K +GD KV+ Sbjct: 419 KIVTLGDFNKVK 430 >gi|189350582|ref|YP_001946210.1| ribosomal protein S12 methylthiotransferase [Burkholderia multivorans ATCC 17616] gi|238065380|sp|A9AH21|RIMO_BURM1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|189334604|dbj|BAG43674.1| putative 2-methylthioadenine synthetase [Burkholderia multivorans ATCC 17616] Length = 453 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 133/477 (27%), Positives = 216/477 (45%), Gaps = 61/477 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 5 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G ++ P V V GP + + Sbjct: 64 IGEA-------LTENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQA 114 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + K D F L + G A+L I EGC+ CTFC++P R Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPPAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K + Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221 Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298 DL+ +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + + + + R + PD+ I S FI GFPGET+ F +D + + Sbjct: 277 HPDVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAE 336 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YSP G + + + ++V+ ER + E VG+ ++VLI Sbjct: 337 LDRVGCFAYSPVEGASANELDGALPDDVREERRARFMEVAEEVSARRIARKVGKTLKVLI 396 Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 397 DEVSDEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453 >gi|114331380|ref|YP_747602.1| MiaB-like tRNA modifying enzyme YliG [Nitrosomonas eutropha C91] gi|122313794|sp|Q0AG95|RIMO_NITEC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|114308394|gb|ABI59637.1| SSU ribosomal protein S12P methylthiotransferase [Nitrosomonas eutropha C91] Length = 445 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 136/472 (28%), Positives = 218/472 (46%), Gaps = 68/472 (14%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC DS R+ ++GY + DADL+V+NTC + A + Sbjct: 12 IPRVGFV-SLGCPKATVDSERILTCLRAEGYLISPNYADADLVVVNTCGFIDSAVAESLE 70 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQT--------Y 133 +G + E G V+V GC+ E +++R++ P V V GPQ + Sbjct: 71 TIGE-------ALTENGK--VIVTGCLGAKE--DVIRQAHPSVLAVTGPQATEEVMAAIH 119 Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193 + LP+ D + L + G A+L I EGC+ CTFC Sbjct: 120 HHLPK-----------------PHDPYLDL-VPPQGIKLTPKHYAYLKISEGCNHHCTFC 161 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDG 242 ++P RG +SR + V+ EA+ L++ GV E+ ++ Q+ +A W+G+ + Sbjct: 162 IIPSMRGDLVSRPVGGVLQEAQSLVEAGVKELLIISQDTSAYGVDIKYRTGFWQGRPV-- 219 Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 + ++L +L E VRL Y +P + A G L +PYL +P Q + RI Sbjct: 220 -RTRITELANALGEFGIWVRLHYVYPYPHVDELIPLMAEGKL---LPYLDIPFQHANKRI 275 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 LK M R + I + R PDIA+ S FIVGFPGET+ +F + +++ + Sbjct: 276 LKLMKRPANSENVLVRIQQWRKTCPDIALRSTFIVGFPGETEAEFEELLAFLEEAQLDRV 335 Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ--VSFNDACV--GQIIEVLI 418 +F YSP G + + + V ++ ERL ++L +QQ +S V GQ + VL+ Sbjct: 336 GAFTYSPVKGAAANVLPDHVPPEIQQERL----ERLMQQQEIISKQRLAVKKGQQLRVLV 391 Query: 419 EKHGKEK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466 + +E + +P + VV ++ GD VR+TD I L+ E Sbjct: 392 DTVDEEGAIARSYADAPEIDGVVYINDASTLKPGDWADVRVTDTDIHDLWTE 443 >gi|327190190|gb|EGE57295.1| putative methylase protein (RNA modification enzyme), MiaB family [Rhizobium etli CNPAF512] Length = 599 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 120/401 (29%), Positives = 192/401 (47%), Gaps = 32/401 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M+ G + +++NTC + +A + Sbjct: 182 VITFGCRLNTYESEVMKAQAEKAGLN--------NAVLVNTCAVTGEAVRQARQA----- 228 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142 ++ ++V GC AQ E ++ P V+ V+G + +Y LP+ Sbjct: 229 --IRRARRDNPHARIIVTGCAAQTE-KQTFAAMPEVDAVLGNEEKLSSASYRSLPDFGVS 285 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A+ RV D + + +DG V AF+ +Q GCD CTFC++PY RG Sbjct: 286 AQEKLRVNDIMSVKATAPQMVRHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 339 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLV 261 S + VVD+AR+L D+G EI L G + ++ G L G T L +L ++ + Sbjct: 340 RSVPMGAVVDQARRLADSGYREIVLTGVDATSY-GGDLPGAP-TLGLLAKTLLKQVPDIR 397 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ + L+ + MP+LHL +Q G D ILK M RRH + + I+ Sbjct: 398 RLRLSSIDSIEADAHLMDLIAEEPRFMPHLHLSLQHGDDMILKRMKRRHLRADALRFIED 457 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 RS+RP+++ +D I GFP ET++ F + L ++ G A F YSPR GTP + M Q Sbjct: 458 ARSLRPEMSFGADMIAGFPTETEEMFDNAVRLAEEAGIAHLHVFPYSPRPGTPAARM-PQ 516 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 +D ++ +R L+ S D VG +L+E +G Sbjct: 517 LDRSLVKDRAARLRATGHRLHQSHLDGMVGTRQWLLVENNG 557 >gi|269798261|ref|YP_003312161.1| MiaB-like tRNA modifying enzyme YliG [Veillonella parvula DSM 2008] gi|269094890|gb|ACZ24881.1| MiaB-like tRNA modifying enzyme YliG [Veillonella parvula DSM 2008] Length = 448 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 127/440 (28%), Positives = 219/440 (49%), Gaps = 29/440 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89 S GC N+ D+ M + GY + +ADLIV+NTC EKA AE + + L Sbjct: 9 SLGCAKNLVDTEVMLGLLRDNGYSITEDLSEADLIVVNTCTFIEKAKAESINTIL----- 63 Query: 90 LKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 + ++ KE G ++VAGC++Q +E+ + P ++ ++G + ++ ++ G R Sbjct: 64 -EVAQYKEDGACKGLIVAGCLSQQYQDELFQEIPEIDALIGTGAWDQVMVAVDAIEHGNR 122 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ER+ + +A++ I EGC+ CTFC++P RG SR++ Sbjct: 123 SCIMENITNIYDERMPRI----QTTPRYSAYVKIAEGCNNGCTFCIIPKVRGAFRSRTIE 178 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 + E +L GV E+ L+ Q+ ++ G L+ K + LL L+ ++G+ +R Sbjct: 179 SIKAEVERLAATGVKEVVLIAQDTTSY-GIDLNNGKPLLTTLLKELTTVEGIEWIRMLYL 237 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P SD L+ + L Y+ +P+Q ++ ILK MNRR + +++ +IR+ Sbjct: 238 YPTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDDRNDIERLLKKIRNAPTH 297 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I + + IVGFPGETD+ F D V +I + F YS GTP +Q+ E VK Sbjct: 298 ITLRTSIIVGFPGETDEQFEELCDFVKEIKFDNMGVFTYSQEAGTPAGAREDQIPEEVKE 357 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKE-----KGKLVGRSPWLQ-S 437 ER L+ +Q + E+ N G I ++E + G+ KG+L ++P + + Sbjct: 358 ERYHVLMSIQAAISEEN---NRDLEGTIDYAMVEEIEEGENNTLLAKGRLKSQAPDVDGN 414 Query: 438 VVLNSKNHNI--GDIIKVRI 455 + + +I GDI+KV++ Sbjct: 415 MYIEDCGEDIQPGDILKVQV 434 >gi|300870181|ref|YP_003785052.1| MiaB-like tRNA modifying enzyme [Brachyspira pilosicoli 95/1000] gi|300687880|gb|ADK30551.1| MiaB-like tRNA modifying enzyme [Brachyspira pilosicoli 95/1000] Length = 415 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/394 (27%), Positives = 202/394 (51%), Gaps = 31/394 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + ++GC++N Y+S ++ + G + ++ +AD I +NTC + + +K+ S+L ++ Sbjct: 5 IHTFGCRLNQYESEKIAYELKNMG-ANITTLKEADAIAINTCTVTNDSDKKLVSYLEKLE 63 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +++ +I + GC +G + N++ + E A+ Sbjct: 64 DIEQKKI--------FLIGCYVSKKGFTTENK----NIITINNDHKE-----EAAQIIFN 106 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + D + E I + + A+L IQ+GC+ FC++C+V RG S + Sbjct: 107 TIQKDTNKE-------IKSPIFFPQEQSRAYLKIQDGCEVFCSYCIVSRVRGKHKSLEPN 159 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLRYT 266 ++ + + D EI L G N+ ++ + F+D+L ++ E K +R+R + Sbjct: 160 KIYEAIKIANDYNYKEIVLTGLNLGSYNF----NNEIKFADILKNILEHSSKYGIRIRLS 215 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P D LI + DVL P+ H+P+QSGS++ILK MNRR+T EY I+++ V Sbjct: 216 SVEPIYFDDELINLFKNKDVLCPHAHIPLQSGSNKILKLMNRRYTREEYLTSIEKLYKVN 275 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P++AIS+D +VGFP E +DDF T +L +K + + F+YS R TP S M ++ Sbjct: 276 PNMAISTDVMVGFPEEENDDFNDTYNLCEKSKFIKMHVFRYSDRENTPSSKMQNKIGYRR 335 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 K +R L + + + ++ + +G+ ++V++E+ Sbjct: 336 KLKRAKLLNELNNKMKDNYYNNALGRKLDVIVEE 369 >gi|312114980|ref|YP_004012576.1| MiaB-like tRNA modifying enzyme [Rhodomicrobium vannielii ATCC 17100] gi|311220109|gb|ADP71477.1| MiaB-like tRNA modifying enzyme [Rhodomicrobium vannielii ATCC 17100] Length = 417 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 126/439 (28%), Positives = 204/439 (46%), Gaps = 30/439 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S + G D +++NTC + +A + + ++R Sbjct: 5 VITFGCRLNTYESEVAKKHAQDAGV--------TDAVIVNTCAVTGEAVRQARQAIRKLR 56 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLPELLERARFGK 147 +E ++V GC AQ E E +V+ G +T L + Sbjct: 57 -------RERPGAKIIVTGCAAQIEPETFADMDEADHVIGNGEKTSAATFLSLAAGDLAR 109 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 V+ SV + + + G +R R A++ +Q GCD CTFCV+P+ RG S Sbjct: 110 VRVNDIASVRETAPHM--ISGFGSRAR---AYVEVQNGCDHRCTFCVIPFGRGPSRSVPA 164 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +VV + R L+++G E+ L G ++ ++ G L GE + L + L RLR ++ Sbjct: 165 GEVVHQIRALVEDGYREVVLTGVDLTSY-GADLPGEMKLGRLVRTVLRLVPELPRLRISS 223 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 + D LI A + + LMP+LHL +QSG + ILK M RRH + + +R +RP Sbjct: 224 IDTMEADDALIDAFAEEERLMPHLHLSLQSGDNLILKRMKRRHAREDVIRFCREMREIRP 283 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 D+ +D I GFP E + F T+ L D+ G + F YSPR T + M Q+D + Sbjct: 284 DMVFGADLIAGFPTEDEAMFENTIRLADECGLSFMHVFPYSPRPKTAAARM-PQLDRALV 342 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447 ER L+ K + + G++ EVL+E+ + VGR+P + + Sbjct: 343 KERAARLRGKADTRLGTHLADETGKVFEVLMER------ERVGRTPGFTEIEIAGGAER- 395 Query: 448 GDIIKVRITDVKISTLYGE 466 G I++ R T L GE Sbjct: 396 GGIVRARATGHDKRHLIGE 414 >gi|330817141|ref|YP_004360846.1| 2-methylthioadenine synthetase [Burkholderia gladioli BSR3] gi|327369534|gb|AEA60890.1| 2-methylthioadenine synthetase [Burkholderia gladioli BSR3] Length = 455 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 136/475 (28%), Positives = 217/475 (45%), Gaps = 56/475 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC + A ++ Sbjct: 4 TPKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDDAVQESLD 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPE 138 +G + E G V+V GC+ A G ++ P V V GP + L E Sbjct: 63 AIGEA-------LTENGK--VIVTGCLGAKKSASGAGLIEEVHPKVLAVTGP---HALGE 110 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 +++ V D F L + G A+L I EGC+ CTFC++P Sbjct: 111 VMQA------VHSHLPKPHDPFTDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSM 163 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR +++V+ EA L +GV E+ ++ Q+ +A W G+ L K Sbjct: 164 RGDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRM 220 Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 ++L+ +L E+ VRL Y +P D L+ ++PYL +P Q + Sbjct: 221 TELVAALGELAAQYGAWVRLHYVYPYPHVDEVIPLMAEGASRGHVLPYLDVPFQHADPDV 280 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 LK M R A +++DR+R R PD+ I S FI GFPGET+ F +D + + Sbjct: 281 LKRMRRPANA---EKVLDRVRKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAEL 337 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 + F YSP G + + + + V+ ER + E + + VGQ ++VLI+ Sbjct: 338 DRVGCFAYSPVEGATANELDGALPDEVREERRARFMEVAEEISAARIERKVGQTLKVLID 397 Query: 420 KHGKEK--GKLVGRSPWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGEL 467 + E G+ +P + VV +K + +GD + V IT L+GE+ Sbjct: 398 EVNAEGGIGRTAADAPEIDGVVYVEPAQGAKRYKVGDFVPVTITGADGHDLWGEV 452 >gi|150025462|ref|YP_001296288.1| hypothetical protein FP1403 [Flavobacterium psychrophilum JIP02/86] gi|238065358|sp|A6GZF6|RIMO_FLAPJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|149772003|emb|CAL43479.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 433 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 131/451 (29%), Positives = 223/451 (49%), Gaps = 45/451 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRI 87 V + GC NVYDS + + G V+ ++ +++V+NTC + A AE V + L Sbjct: 13 VITLGCSKNVYDSEVLMGQLKASGKNVVHE-EEGNIVVINTCGFIDNAKAESVNTILEYA 71 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 + + + V V GC+++ ++ + P V+ G LP LL Sbjct: 72 DKKERGLVDK-----VFVTGCLSERYRPDLEKEIPNVDQYFGTT---ELPALL------- 116 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + + DY E ERL+ Y A+L I EGCD+ C+FC +P RG +S+++ Sbjct: 117 KALGADYRHELLGERLTTTPKNY-------AYLKISEGCDRPCSFCAIPLMRGKNVSQTI 169 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRLR 264 ++V EA L NGV E+ L+ Q++ + GLD +K +LL +L +I+G+ +RL Sbjct: 170 EKLVKEAEGLAKNGVKELILIAQDLTYY---GLDLYKKRALGELLEALVKIEGIEWIRLH 226 Query: 265 YT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 Y T P D+ + + + + Y+ +P+Q SD ILKSM R T + +++ Sbjct: 227 YAFPTGFPMDVLEIMKREPK----ICNYIDIPLQHISDSILKSMKRGTTREKTTKLLKDF 282 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P +AI + IVG+PGET++DF + V ++ + + F YS T +++ V Sbjct: 283 RAAVPGMAIRTTLIVGYPGETEEDFEILKEFVQEMKFDRMGCFAYSHEENTGAYELVDDV 342 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS- 437 + VK R L + + N +GQ +I++ KE G VGR SP + + Sbjct: 343 PDEVKQARSLEIMDLQSQISWDLNQEKLGQTFRCIIDR--KEGGHFVGRTEFDSPDVDNE 400 Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 V++++ H + G+ + ++I + LYGE Sbjct: 401 VLIDATKHYVKTGEFVNIKIIEATEFDLYGE 431 >gi|218282363|ref|ZP_03488645.1| hypothetical protein EUBIFOR_01227 [Eubacterium biforme DSM 3989] gi|218216649|gb|EEC90187.1| hypothetical protein EUBIFOR_01227 [Eubacterium biforme DSM 3989] Length = 432 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 119/403 (29%), Positives = 203/403 (50%), Gaps = 30/403 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F + + GC++N Y+S GYE+V+ D+ ++NTC + AA K + Sbjct: 9 KFSIITLGCKVNAYESQYYAGQLEELGYEQVSPEKACDICIINTCTVTNTAASKSRQKIH 68 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + + + L VV GC Q EE R++ +++VG + L L+++A Sbjct: 69 YAKRM-------NPNALCVVVGCFVQCASEE-ERKALDADLIVGAKQKNELVNLIQQALK 120 Query: 146 GKRVVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +D + V FE + + + + AFL +Q+GC++FC++C +P+ RG E Sbjct: 121 DHEKIDVVHEVTQFKDFEAMPV----HCFESMHRAFLKVQDGCNQFCSYCAIPFARGRER 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVR 262 S + QV+ A+ L D G EI L G + G+ DGE + L+ +L E V Sbjct: 177 SLNHEQVIQIAKDLCDKGHTEIVLTGIHT----GRYFDGEY-DLAKLMKALLENTPDYVY 231 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 R ++ ++SD LI + + +LH+PVQS + LK MNR +T ++++ I+ I Sbjct: 232 YRISSIEITEVSDELIGLMQENSRMCHHLHIPVQSACNETLKRMNRPYTIEQFKEKIEYI 291 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RS PDI+IS+D I GF E+D++F T + ++ + F YS R GT S + ++ Sbjct: 292 RSCIPDISISTDVIAGFVQESDEEFETTYKNLAELELSFFHVFPYSKRNGTKASTLKGEI 351 Query: 383 DENV---KAERLLCLQKKLREQQVS-FNDACVGQIIEVLIEKH 421 + + + RLL L + R++ + FN ++VLIE+ Sbjct: 352 NGKIAKARVARLLELSNECRKRDMQRFNP------VQVLIERQ 388 >gi|317503044|ref|ZP_07961124.1| Fe-S oxidoreductase [Prevotella salivae DSM 15606] gi|315665844|gb|EFV05431.1| Fe-S oxidoreductase [Prevotella salivae DSM 15606] Length = 446 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 112/402 (27%), Positives = 193/402 (48%), Gaps = 23/402 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ M G V+ + AD+ ++NTC + E A K + R+ Sbjct: 16 TLGCKLNFSETSTFGKMLSDMGVVTVDKGEKADICLINTCSVTEVADHKCRQAIHRM--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +E ++V GC AQ E E++ + P V++V+G L + L A + Sbjct: 73 ----ARENPGAFIIVTGCYAQLESEKV-SKIPGVDLVLGSNEKANLIQYLNDAFTKRETG 127 Query: 151 DTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 +T + K + + ++ FL +Q+GC+ FCT+C +PY RG + ++S Sbjct: 128 ETLHQFHSVKTKDIKTFQASCSKGNRTRYFLKVQDGCNYFCTYCTIPYARGFSRNPTISS 187 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FSDLLYSLSEIKGLVRLRYTT 267 ++ +A + G EI L G N+ + GE F DL+ +L +++G+ R R ++ Sbjct: 188 LIKQAEEAAAEGGKEIVLTGVNIGDF------GETTHERFIDLVKALDKVEGIKRFRISS 241 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P + D LI + MP+ H+P+QSGSD +LK M+RR+ + I I+ + P Sbjct: 242 LEPDLIDDELIAFCAESRAFMPHFHIPLQSGSDTVLKLMHRRYDTSLFAHKIKLIKELMP 301 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384 D I D +VG GE + F + ++++ Q F YS R GT ++ + D+ Sbjct: 302 DAFIGVDVMVGCRGEKPEYFEECYNFLEQLPITQLHVFPYSERPGTSALAIPYVVNEKDK 361 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 ++++RLL L K + F +G EVL EK + K Sbjct: 362 KLRSKRLLELSDK---KTQLFYQKFIGSEREVLFEKAPRGKA 400 >gi|154491690|ref|ZP_02031316.1| hypothetical protein PARMER_01301 [Parabacteroides merdae ATCC 43184] gi|154087931|gb|EDN86976.1| hypothetical protein PARMER_01301 [Parabacteroides merdae ATCC 43184] Length = 440 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 124/421 (29%), Positives = 200/421 (47%), Gaps = 22/421 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + QG + + AD+ V+NTC + E A +K + RI Sbjct: 16 TLGCKLNFAETSTIGKVLAEQGVRKARPGEKADICVVNTCSVTELADKKCRQAIRRIG-- 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K+ +VV GC AQ + EE+ V++V+G + L L+ + + Sbjct: 74 -----KQHPGAFIVVTGCYAQLKPEEVSHIEG-VDLVLGAEQKLDLLMYLDDLKKREEGG 127 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 S S +R R FL +Q+GCD FC++C +P+ RG + +++ + Sbjct: 128 AIIASRTKDIRTFSPSCSADDRTR---HFLKVQDGCDYFCSYCTIPFARGRSRNGTIASM 184 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V +A ++ NG EI L G N+ + GK GE TF DL+ +L E++G+VR R ++ P Sbjct: 185 VKQAEEVASNGGKEIVLTGVNIGDF-GKST-GE--TFIDLIRALDEVEGIVRYRISSIEP 240 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D I P+ H+P+QSGSD +LK M RR+ +R I++I+ V P Sbjct: 241 NLITDEAIDFVACSRRFAPHFHIPLQSGSDEVLKLMRRRYDTILFRHKIEKIKEVMPHAF 300 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I D IVG GETD F ++ + +Q F YS R GT + VD K R Sbjct: 301 IGVDVIVGTRGETDTCFEEARTFIESLDISQLHVFSYSERPGTQALKIDHVVDPKTKHAR 360 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKLVGRSPWLQSVVLNSK 443 L + +F +A +GQ VL E+ HG + + P+ S+V ++ Sbjct: 361 SQQLLDISDRKLHAFYEAHIGQKANVLFEQTRKGGMMHGFTENYIKVEIPYDHSLVNETR 420 Query: 444 N 444 Sbjct: 421 Q 421 >gi|313114955|ref|ZP_07800450.1| MiaB-like tRNA modifying enzyme [Faecalibacterium cf. prausnitzii KLE1255] gi|310622715|gb|EFQ06175.1| MiaB-like tRNA modifying enzyme [Faecalibacterium cf. prausnitzii KLE1255] Length = 431 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 121/432 (28%), Positives = 213/432 (49%), Gaps = 23/432 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N+ ++ +E MF + G+ + AD+ V+N+C + +K +L R + Sbjct: 7 TLGCKVNLNETGALEQMFRANGFTIAQENEPADVFVVNSCTVTNFGDQKSRKWLRRKK-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +E + V+ GC QA EE + + V L +L+ +R+V Sbjct: 65 -----RENPGAVTVLTGCYPQAFPEEAAQFTEADLVCGNGDRKAILDNVLKLLDGHERIV 119 Query: 151 D-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 T + +KFE L + + + AF+ +++GC++ C +CV+P RG SR + Sbjct: 120 AITPHQRGEKFEELPVERFETHTR----AFIKVEDGCNRQCAYCVIPRARGPVRSRDEAS 175 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 ++ E R+L +G E+ L ++ ++ GLD +L+ ++++G+ R+R + Sbjct: 176 ILAELRQLAASGYREVVLSAISLPSY---GLD-TGTNLVELVEHCAQVEGIQRIRLGSLD 231 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV---R 326 P ++ I ++ L P HL +QSG L+ M R +TA +Y Q++D++R+ R Sbjct: 232 PDMLTPEFITRLAAVEKLCPQFHLSLQSGCTATLRRMRRVYTAEQYAQVVDQLRAAYGER 291 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P ++ ++D I GFPGET DF + + + KIG+ + F YS R GTP + EQV E Sbjct: 292 P-VSFTTDCICGFPGETQADFEESCEFLKKIGFLKVHVFPYSRRSGTPAYDFPEQVHERE 350 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVLNSKNH 445 K ER + E + A VG +VL+E G L G + VV+++ H Sbjct: 351 KQERSRVMNGIAEEVRREVLTAYVGTEDDVLLET--PLSGTLFTGYTRLYIPVVVSAPGH 408 Query: 446 NIGDIIKVRITD 457 G I+ V + + Sbjct: 409 ESGQIVHVTLGE 420 >gi|167587080|ref|ZP_02379468.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia ubonensis Bu] Length = 453 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 132/477 (27%), Positives = 216/477 (45%), Gaps = 61/477 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 5 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G ++ P V V GP + + Sbjct: 64 IGEA-------LTENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQA 114 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + K D F L + G A+L I EGC+ CTFC++P R Sbjct: 115 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 164 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K + Sbjct: 165 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 221 Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298 DL+ +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 222 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 276 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + + + + R + PD+ I S FI GFPGET+ F +D + + Sbjct: 277 HPEVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAE 336 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YSP G + + + ++V+ R + E + VG+ ++VLI Sbjct: 337 LDRVGCFAYSPVEGATANELDGALPDDVREARRARFMEVAEEVSAKRIERKVGKTLKVLI 396 Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 397 DEVSDEGGIGRTAADAPEIDGVVYVEPAQKASKRYKVGDFVSVKITGADGHDLWGEV 453 >gi|288801250|ref|ZP_06406705.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 299 str. F0039] gi|288331861|gb|EFC70344.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 299 str. F0039] Length = 447 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 116/403 (28%), Positives = 199/403 (49%), Gaps = 24/403 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ M G V + AD+ ++NTC + E A K R Sbjct: 16 TLGCKLNFSETSTFGKMLQGMGVRTVERGERADICLINTCSVTEVADHKC-------RQA 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---K 147 N ++E V+V GC AQ E E I + V++V+G L + L A K Sbjct: 69 INRMVRENPGSFVIVTGCYAQLESERISKMEG-VDLVLGSNEKANLIQYLSDAWSNGEEK 127 Query: 148 RVVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + D+ + SV+ K + +R FL +Q+GC FCT+C +P+ RG + S Sbjct: 128 NINDSSFHSVKTK--DIKTFAASCSRGNRTRYFLKVQDGCSYFCTYCTIPFARGFSRNPS 185 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +S +V++A + G EI L G N+ + G+ + TF DL+ +L +++G+ R R + Sbjct: 186 ISSLVEQAEQAAREGGKEIVLTGVNIGDF---GVSTNE-TFFDLIKALDKVEGIKRFRIS 241 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P +SD +I+ + MP+ HLP+QSGS+ +L+ M R++ + + +I+++ Sbjct: 242 SLEPDLLSDEIIEYCANSRAFMPHFHLPLQSGSNDVLRLMKRKYDRELFADKVHKIKTLI 301 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVD 383 P+ I D +VG GE + F + +D + Q F YS R GT ++ D Sbjct: 302 PNAFIGVDVMVGSRGEKPEFFEDCYNFLDSLDVTQLHVFPYSERRGTAALKIPYIVNDKD 361 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 + ++++RLL L + +F A +G+ +VL EK+ K K Sbjct: 362 KKLRSKRLLDLSDT---KTQAFYAAHLGKTAQVLFEKNIKGKA 401 >gi|282850499|ref|ZP_06259878.1| MiaB-like protein [Veillonella parvula ATCC 17745] gi|294792122|ref|ZP_06757270.1| MiaB tRNA modifying enzyme-like protein [Veillonella sp. 6_1_27] gi|294793993|ref|ZP_06759130.1| MiaB tRNA modifying enzyme-like protein [Veillonella sp. 3_1_44] gi|282579992|gb|EFB85396.1| MiaB-like protein [Veillonella parvula ATCC 17745] gi|294455563|gb|EFG23935.1| MiaB tRNA modifying enzyme-like protein [Veillonella sp. 3_1_44] gi|294457352|gb|EFG25714.1| MiaB tRNA modifying enzyme-like protein [Veillonella sp. 6_1_27] Length = 448 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 127/440 (28%), Positives = 219/440 (49%), Gaps = 29/440 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89 S GC N+ D+ M + GY + +ADLIV+NTC EKA AE + + L Sbjct: 9 SLGCAKNLVDTEVMLGLLRDNGYSITEDLSEADLIVVNTCTFIEKAKAESINTIL----- 63 Query: 90 LKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 + ++ KE G ++VAGC++Q +E+ + P ++ ++G + ++ ++ G R Sbjct: 64 -EVAQYKEDGTCKGLIVAGCLSQQYQDELFQEIPEIDALIGTGAWDQVMVAVDAIEHGNR 122 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + ER+ + +A++ I EGC+ CTFC++P RG SR++ Sbjct: 123 SCIMENITNIYDERMPRI----QTTPRYSAYVKIAEGCNNGCTFCIIPKVRGAFRSRTIE 178 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 + E +L GV E+ L+ Q+ ++ G L+ K + LL L+ ++G+ +R Sbjct: 179 SIKAEVERLAATGVKEVVLIAQDTTSY-GIDLNAGKPLLTTLLKELTTVEGIEWIRMLYL 237 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P SD L+ + L Y+ +P+Q ++ ILK MNRR + +++ +IR+ Sbjct: 238 YPTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDDRNDIERLLKKIRNAPTH 297 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I + + IVGFPGETD+ F D V +I + F YS GTP +Q+ E VK Sbjct: 298 ITLRTSIIVGFPGETDEQFEELCDFVKEIKFDNMGVFTYSQEDGTPAGAREDQIPEEVKE 357 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKE-----KGKLVGRSPWLQ-S 437 ER L+ +Q + E+ N G I ++E + G+ KG+L ++P + + Sbjct: 358 ERYHVLMSIQAAISEEN---NRNLEGTIDYAMVEEIEEGENNTLLAKGRLKSQAPDVDGN 414 Query: 438 VVLNSKNHNI--GDIIKVRI 455 + + +I GDI+KV++ Sbjct: 415 MYIEDCGEDIQPGDILKVQV 434 >gi|161524661|ref|YP_001579673.1| ribosomal protein S12 methylthiotransferase [Burkholderia multivorans ATCC 17616] gi|160342090|gb|ABX15176.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia multivorans ATCC 17616] Length = 468 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 133/477 (27%), Positives = 216/477 (45%), Gaps = 61/477 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 20 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 78 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G ++ P V V GP + + Sbjct: 79 IGEA-------LTENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQA 129 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + K D F L + G A+L I EGC+ CTFC++P R Sbjct: 130 V-HSHLPKP--------HDPFVDL-VPPAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMR 179 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K + Sbjct: 180 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMT 236 Query: 249 DLLYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSG 298 DL+ +L E+ VRL Y +P M++ K H ++PYL +P Q Sbjct: 237 DLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPLMAEGPFKGH-----VLPYLDVPFQHA 291 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + + + + R + PD+ I S FI GFPGET+ F +D + + Sbjct: 292 HPDVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAE 351 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YSP G + + + ++V+ ER + E VG+ ++VLI Sbjct: 352 LDRVGCFAYSPVEGASANELDGALPDDVREERRARFMEVAEEVSARRIARKVGKTLKVLI 411 Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 412 DEVSDEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 468 >gi|73748729|ref|YP_307968.1| MiaB family tRNA modification protein [Dehalococcoides sp. CBDB1] gi|147669495|ref|YP_001214313.1| MiaB-like tRNA modifying enzyme [Dehalococcoides sp. BAV1] gi|73660445|emb|CAI83052.1| tRNA modification enzyme, MiaB family [Dehalococcoides sp. CBDB1] gi|146270443|gb|ABQ17435.1| MiaB-like tRNA modifying enzyme [Dehalococcoides sp. BAV1] Length = 416 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 113/405 (27%), Positives = 191/405 (47%), Gaps = 33/405 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + + GC++N ++ M F GY V+ D+ D+ +LNTC + A K + RI Sbjct: 6 LDTLGCKLNQAETEAMGREFAQAGYHLVSPQDNWDIYILNTCTVTHVADRKA-RYQMRIA 64 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 N + + GC A+ G EI P N+++ ++ Sbjct: 65 RRHNP------SGFICLTGCYAENGGNEI--SCPDANLILD----------------NRQ 100 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 D ++ F + Y + R +F+ IQ+GCD FCT+C+VP+ R + R + Sbjct: 101 KTDIVNNIIRLFPLENSASALYEKGR-TRSFIKIQDGCDNFCTYCIVPFVRRYKNCRGVD 159 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++ E G EI L G + + G + + L+ ++ E + RLR ++ Sbjct: 160 DIISEINLRQAEGYQEIVLTGTEIGEYTSSGFN-----LAGLIEAILERTRIPRLRLSSL 214 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P +++ L+ + L + H+ +QSGSDRIL MNR ++ +Y + ++ IR PD Sbjct: 215 QPNEITLPLLALWKNRR-LCNHFHMALQSGSDRILGLMNRPYSLTDYTRTLEAIRRQIPD 273 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A+++D IVGFPGETD+DF ++ V++ G+A+ F YS R GT S + ++VD V Sbjct: 274 VAVTTDMIVGFPGETDEDFACSLKYVEQAGFARVHPFPYSERPGTMASQLTDKVDPVVIK 333 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 RL + + + + EVL E K+ G G +P Sbjct: 334 TRLSGMMLAAKNASLEYRHQSRDLEKEVLWENKMKD-GLWFGYTP 377 >gi|282860156|ref|ZP_06269231.1| MiaB-like protein [Prevotella bivia JCVIHMP010] gi|282587045|gb|EFB92275.1| MiaB-like protein [Prevotella bivia JCVIHMP010] Length = 451 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 120/446 (26%), Positives = 204/446 (45%), Gaps = 22/446 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N ++ ++ G + AD++++NTC + E A K R + N Sbjct: 18 GCKLNFSETSTFARTLYNMGVHEAKKSEVADIVLINTCSVTEVADHKC-------RQIIN 70 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 +++ V+V GC AQ E E + VN+V+G L + L A V T Sbjct: 71 RMVRQNPGAFVIVTGCYAQLESETVANIEG-VNLVLGSNEKANLVQYLSDAWNKVEEVST 129 Query: 153 DYSVEDK------FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 E+K + ++ +R FL +Q+GC+ FCT+C +PY RG + S Sbjct: 130 ANGEENKKYHTVKTKDITTFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFSRNPS 189 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 ++ +V +A + + G EI L G N+ + G+ +F DL+ +L +++G+ R R + Sbjct: 190 IASLVKQAEEAVAEGGREIVLTGVNIGDF-GRTTSE---SFLDLVKALDKVEGIERYRIS 245 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P + D LI MP+ H+P+QSGSD +LK M+R + + I+ I+ Sbjct: 246 SLEPDLIDDELIAYCATSKHFMPHFHIPLQSGSDEVLKLMHRHYDRALFANKINLIKEYM 305 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P+ I D +VG GE + F + +D + Q F YS R GT ++ VD Sbjct: 306 PNAFIGVDVMVGSRGEKPEYFEDCYNFLDALPVTQLHVFPYSERPGTSALSIPYVVDPRE 365 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSPWLQSVVLNSKN 444 K R L K ++ +F +GQ ++L EK GK ++ +K+ Sbjct: 366 KKHRANRLLKLSDQKTQAFYAQHIGQEADILFEKAVRGKAMHGFTDNYIRVELSPAEAKD 425 Query: 445 HNIGDIIKVRITDVKI--STLYGELV 468 I++VR+ D + L E++ Sbjct: 426 EYDNKIVRVRLGDFNFDKTALKAEII 451 >gi|307207026|gb|EFN84849.1| CDKAL1-like protein [Harpegnathos saltator] Length = 542 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 130/464 (28%), Positives = 221/464 (47%), Gaps = 46/464 (9%) Query: 22 IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 I+P Q +VK++GC N D+ M +QGY ++ ADL +LN+C ++ A ++ Sbjct: 49 IIPGTQTVYVKTWGCTHNSSDAEYMAGQLAAQGYNLIDDKLKADLWLLNSCTVKNPAEDQ 108 Query: 80 VYSFLGRIRN-LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTYYRL 136 RN ++N R K G +VVAGCV Q +SP + ++G Q R+ Sbjct: 109 -------FRNEIENGR-KAGKH--IVVAGCVPQGAP-----KSPFLKGLSIIGVQQIDRV 153 Query: 137 PELLERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 E++E G R + T + + S ++ RK + I GC CT+C Sbjct: 154 VEVVEETLKGHTVRFLRTKKNSTGRKIGGSTLNLPKIRKNPRIEIIAISTGCLNQCTYCK 213 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 + RG S ++V A + + GVCE+ + ++ A+ G+ + +LL+ L Sbjct: 214 TKHARGQLGSYPPDEIVARALQAFEEGVCELWITSEDTGAY-GRDIG---TNLPELLWKL 269 Query: 255 SEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 ++ G+ Y H +++ L + +LH+PVQSGSD++L M Sbjct: 270 VDVIPESCMMRIGMTNPPYILEHLDEIAKILRHPK-----VYSFLHIPVQSGSDQVLADM 324 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R +T ++ +++ +R PD+ I++D I GFP ET+++F T+ L K + F + Sbjct: 325 KREYTRADFEHVVNYLRERVPDLTIATDIICGFPSETEENFEETLTLCRKYKFPSLFINQ 384 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKE 424 + PR GTP + M + VKA KKL E S+ + VG++ VL+ + + Sbjct: 385 FFPRPGTPAARMPRIPTQQVKAR-----TKKLTELFYSYEPYENQVGKLCCVLVTEVAHD 439 Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 K VG + + V+L + +G +I VRIT+ ++ E V Sbjct: 440 KLHYVGHNKFYGQVLLPKEEEYMGMMILVRITEATKFSMKAEYV 483 >gi|299147882|ref|ZP_07040945.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_23] gi|298514065|gb|EFI37951.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_23] Length = 439 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 115/396 (29%), Positives = 200/396 (50%), Gaps = 28/396 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G V + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTVRKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 +K+ VVV GC AQ + ++ + V+VV+G + L + L ++ G+ Sbjct: 73 ----VKQHPGAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + T + S D R R FL +Q+GCD FC++C +P+ RG + ++ Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++AR+ G EI L G N+ + GK GE +F DL+ +L +++G+ R R ++ Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVEGIERYRISS 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D +I+ MP+ H+P+QSG D +L+ M RR+ + + +I+ V P Sbjct: 237 IEPNLLTDAIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVRKIKEVMP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384 D I D IVG GET + F +D + Q F YS R GT ++ ++ Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + +++RLL L ++ +F +GQ++ VLIEK Sbjct: 357 HQRSQRLLTLSD---QKTQAFYARHIGQVMPVLIEK 389 >gi|319899903|ref|YP_004159631.1| MiaB-like tRNA modifying enzyme [Bacteroides helcogenes P 36-108] gi|319414934|gb|ADV42045.1| MiaB-like tRNA modifying enzyme [Bacteroides helcogenes P 36-108] Length = 439 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 118/391 (30%), Positives = 193/391 (49%), Gaps = 18/391 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G V + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTVRKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K+ VVV GC AQ + E + + V+VV+G + L + L K Sbjct: 73 ----VKQHPGAFVVVTGCYAQLKPEAVAKIEG-VDVVLGAEQKKDLLQYL--GNLQKHET 125 Query: 151 DTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 Y SV + +R R FL +Q+GCD +C++C +P+ RG + +++ Sbjct: 126 GEAYTSVLKDIHSFAPSCSRGDRTR---FFLKVQDGCDYYCSYCTIPFARGRSRNGTVAS 182 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 +V++AR+ + +G EI L G N+ + GK GE TF DL+ +L ++G+ R R ++ Sbjct: 183 MVEQARQAVADGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDGVEGIERYRISSIE 238 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P ++D +I+ MP+ H+P+QSGSD +LK M RR+ + I RI+ V PD Sbjct: 239 PNLLTDEIIEYVAGSRRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKIRRIKEVMPDA 298 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 I D IVG GET++ F + + Q F YS R GT + V K E Sbjct: 299 FIGVDVIVGTRGETEEYFEQAYQFIGSMDVTQLHVFSYSERPGTQALKIDHVVSPAEKHE 358 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 R L + E+ +F +G ++ VL+E+ Sbjct: 359 RSRRLLELSEEKTRAFYARHIGSVMPVLLER 389 >gi|119478493|ref|ZP_01618455.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [marine gamma proteobacterium HTCC2143] gi|119448474|gb|EAW29722.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [marine gamma proteobacterium HTCC2143] Length = 480 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 132/460 (28%), Positives = 220/460 (47%), Gaps = 38/460 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ S GC + DS R+ GY+ + +AD++V+NTC + A ++ + Sbjct: 35 QKVGFISLGCPKALVDSERILTQLKLDGYDISPNYHEADVVVVNTCGFIDSAKQESMDAI 94 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + I E G V+V GC+ + + E I +P V V GP Y + + + + Sbjct: 95 -------SEAINENGK--VIVTGCMGKGTDAESIKAANPDVLSVSGPADYTSVMDAVHQ- 144 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 F T + D I G A+L I EGC+ CTFC++P RG + Sbjct: 145 -FIPPTAATHNPLIDL-----IPPQGVKLTPQHYAYLKISEGCNHRCTFCIIPDMRGDLV 198 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLS 255 SR ++ VV EA+ L+ GV E+ ++ Q+ +A+ + +DG+ + DL +L Sbjct: 199 SRPIADVVSEAKTLVAAGVRELLVISQDTSAYGVDVKYKLDFVDGQARETRMLDLAVALG 258 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 E+ VRL Y +P + A G + +PYL +P Q S RILK M R + Sbjct: 259 ELGVWVRLHYVYPYPHVDKIIPLMAAGKI---LPYLDIPFQHASPRILKLMKRPGNQEKV 315 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + I R++ P++ I S F+VGFPGET+DDF+ +D + + + FKYSP G Sbjct: 316 LERIKNWRTICPELVIRSTFVVGFPGETEDDFQLLLDWLQEAQLDRVGCFKYSPVEGAKA 375 Query: 376 SNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430 +++ + V E + + ER + Q+ + Q++ +GQ +EVLI++ ++ G+ Sbjct: 376 NDLPDHVPEAIQQQRWERFMETQQHISAQRLQQR---IGQQLEVLIDEVDEQGAVGRCYA 432 Query: 431 RSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 +P + V + + +GD + V IT L+ E V Sbjct: 433 DAPEIDGKVYLDDFTDTFVGDALLVTITGADEYDLWAEPV 472 >gi|288802855|ref|ZP_06408292.1| 2-methylthioadenine synthetase [Prevotella melaninogenica D18] gi|288334672|gb|EFC73110.1| 2-methylthioadenine synthetase [Prevotella melaninogenica D18] Length = 449 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 113/401 (28%), Positives = 192/401 (47%), Gaps = 18/401 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ ++ G + AD+ ++NTC + E A K + R+ Sbjct: 16 TLGCKLNFSETSTFARTLYNMGVREAKKTEQADICLINTCSVTEVADHKCRQIIHRM--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ V+V GC AQ E + + V++V+G L + L A + K Sbjct: 73 ----VRQNPGAFVIVTGCYAQLESATVAKIEG-VDLVLGSNEKADLVQYLSDA-WNKVDT 126 Query: 151 DTDYSVEDKFERLSIVD-----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + E ++ + D +R FL +Q+GC+ FCT+C +P+ RG + Sbjct: 127 AKEETSEGEYHSVKTKDIKSFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPFARGFSRNP 186 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ +V +A + G EI L G N+ + GK GE +F DL+ +L +++G+ R R Sbjct: 187 TIQSLVAQAEEAAREGGKEIVLTGVNIGDF-GK-TTGE--SFLDLVKALDKVEGIQRFRI 242 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ P + D LI + MP+ H+P+QSGSD +L+ M+RR+ + + I I+ Sbjct: 243 SSLEPDLIDDELIAYCAESRAFMPHFHIPLQSGSDEVLELMHRRYDTALFARKIKLIKEK 302 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD I D +VG GE + F + +D + Q F YS R GT ++ VD+ Sbjct: 303 MPDAFIGVDVMVGSRGERPEYFEDCYNFLDSLPVTQLHVFPYSERPGTAALSIPYVVDDR 362 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 K R L K E+ +F A +GQ +VL EK + K Sbjct: 363 EKKHRAHKLLKLSDEKTRAFYAAHIGQEADVLFEKAARGKA 403 >gi|31789483|gb|AAP58596.1| conserved hypothetical protein [uncultured Acidobacteria bacterium] Length = 410 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 112/368 (30%), Positives = 186/368 (50%), Gaps = 27/368 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + + ++GC++N DSL +E S+G + + AD++++NTC + A + + R Sbjct: 5 YALVTFGCRVNQADSLALEGQLRSRGAV-LAPPERADVVIVNTCSVTAAADQGARQTVRR 63 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + ++ VVV GC A E+ +V+VV P R L++ Sbjct: 64 V-------TRDNPAARVVVTGCYASRCAGEVAALPNVVHVV--PND--RKESLVD----- 107 Query: 147 KRVVDTDYSVEDKFERLSI----VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +++ + + +F ++ G + +T L +Q GCD+ C++C++P TRG Sbjct: 108 --LIEWEPTTATRFGGGDGPCGGLEPGVGGRTALT--LRVQTGCDETCSYCIIPRTRGSS 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR L V + ID G EI + G ++ ++ G+ L G+ T L+ L++ G V Sbjct: 164 RSRPLELVTAGIARAIDAGYKEIAITGVHLGSY-GRDL-GDGTTLVALVRRLADWPGDVL 221 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 R ++ P D SD L+ + P+ HLP+Q G+DR+L++M R +TA YR++++RI Sbjct: 222 FRLSSLEPMDCSDALVDLVACSPRVAPHFHLPLQHGADRVLRAMRRPYTAGFYRRLVERI 281 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P A+ SD IVGFPGE +DF + LV + Q F YS R GT S +V Sbjct: 282 RARLPHAAVGSDLIVGFPGEATEDFEESRALVASLPLTQLHVFPYSDRPGTEASGAGRKV 341 Query: 383 DENVKAER 390 + V ER Sbjct: 342 EGAVIRER 349 >gi|317503240|ref|ZP_07961298.1| 2-methylthioadenine synthetase [Prevotella salivae DSM 15606] gi|315665653|gb|EFV05262.1| 2-methylthioadenine synthetase [Prevotella salivae DSM 15606] Length = 433 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 124/452 (27%), Positives = 217/452 (48%), Gaps = 43/452 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS + F + GY V+ D ++ V+NTC E A E+ + + Sbjct: 10 TMGCSKNLVDSELLMKQFEANGYHCVHDSKRPDGEIAVINTCGFIESAKEESINTILEFV 69 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--- 145 N KN EG + V GC++Q +E+ + P V+ G Y +L L +A Sbjct: 70 NAKN----EGRLKRLYVMGCLSQRYKDELEQEIPEVDKFYGKFNYKQLLTDLGKADVPSC 125 Query: 146 -GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+R + T A++ I EGC++ C +C +P G S Sbjct: 126 NGRRHLTTPRHY---------------------AYVKIAEGCNRQCAYCAIPLITGKHTS 164 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R +++ E ++L++ GV E ++ Q + + G +DG++ +DL+ +++IKG+ +R Sbjct: 165 RPKEEILQEVKELVEEGVKEFQIIAQELTYY-GVDIDGQR-HIADLIRDIADIKGVEWIR 222 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++P + L+ + + YL + +Q S+ +L +M+R + E ++I +IR Sbjct: 223 LHYAYPNEFPLELLDVIREKPNVCKYLDIALQHISNHMLDAMHRHVSKEETVELIKKIRE 282 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVD 383 P I I + +VGFPGETD+DF +D V + + +F YS GT + + V Sbjct: 283 AVPGIHIRTTLLVGFPGETDEDFNELVDFVKWAKFERMGAFTYSEEEGTYSAGHYKDDVS 342 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV---- 439 E VK +RL L +E + +A +G+ ++V+I++ KE VGRS + V Sbjct: 343 EEVKQKRLDTLMAVQQEISAAVEEAKIGKTLKVIIDR--KEGDYYVGRSEFCSPEVDPEV 400 Query: 440 ---LNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ K +G+ V ITD + LYG ++ Sbjct: 401 LIPVSEKKLRVGNFYHVEITDSEAFDLYGHVI 432 >gi|262370220|ref|ZP_06063546.1| MiaB-like tRNA modifying enzyme YliG [Acinetobacter johnsonii SH046] gi|262314562|gb|EEY95603.1| MiaB-like tRNA modifying enzyme YliG [Acinetobacter johnsonii SH046] Length = 447 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 131/468 (27%), Positives = 221/468 (47%), Gaps = 52/468 (11%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ ++GY+ + D ADL+V+NTC E A ++ Sbjct: 4 PKVGFV-SLGCPKALVDSERILTQLKTEGYDVASDYDGADLVVVNTCGFIESAVQESLDA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + N R V+V GC+ + E ++I + P V V G Y + E + + Sbjct: 63 IGEAMS-ANGR--------VIVTGCLGKDE-DKIRQMHPNVLKVTGAAAYQEVMEAVHQY 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + F L + + G A+L I EGC+ CTFC++P RG + Sbjct: 113 V-------PEPPKHNPFIDL-VPEQGIRLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLV 164 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V++EA L GV E+ ++ Q+ +A W G+ + K F D+ Sbjct: 165 SRPVGSVLEEAAALKRAGVKEVLVISQDTSAYGLDTKYKLDFWNGQPV---KTKFYDMCE 221 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +L ++ VRL Y +P + + A G ++PYL +P Q S ++LK M R + Sbjct: 222 ALGQLGIWVRLHYVYPYPHVDAVIDLMAQGK---ILPYLDIPFQHASPKVLKLMKRPAHS 278 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + + R PD+ + S F+VGFPGET++DF ++ + + + F YSP G Sbjct: 279 ENTLERLKLWREKCPDLVLRSTFVVGFPGETEEDFEILLEWLKEAQLDRVGCFTYSPVEG 338 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIEKHGKEKGKL 428 +++ + V E +K +R ++ E Q + + A VGQ + VL+++ +E Sbjct: 339 ATANDLPDHVPEEIKQQRY----ERFMEVQQAISAAKLRKRVGQKMTVLVDELDEEFPVA 394 Query: 429 VGRS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + RS P + V ++ GD+++V ITD LY +L+ Sbjct: 395 IARSYADAPEIDGNVFVEDIDKSQIKSGDLLEVEITDADEYDLYAQLI 442 >gi|115522348|ref|YP_779259.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisA53] gi|115516295|gb|ABJ04279.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisA53] Length = 421 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 124/404 (30%), Positives = 194/404 (48%), Gaps = 38/404 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N ++S + + G D IV+N+C + +A + IR Sbjct: 5 VLTFGCRLNTHESELIRREAEAAGC--------VDTIVVNSCAVTNEAVAQARQ---SIR 53 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 LK +E +VV GC AQ E + P V+ V+G R A R Sbjct: 54 RLK----REHPQARIVVTGCAAQTE-TAMFGAMPEVDRVLGNADKLR-----GEAWRATR 103 Query: 149 VVDTDYSVEDKFERLSIVDGGYNR----------KRGVT-AFLTIQEGCDKFCTFCVVPY 197 + + +++++ D R +RG+ F+ +Q GCD CTFC++P+ Sbjct: 104 AAFDNAGPDSSTDKIAVADIMAVREMAPHLIEGFQRGLPRVFVQVQNGCDHRCTFCIIPF 163 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG S V+++ R L G EI L G ++ ++ G L G + L E+ Sbjct: 164 GRGPSRSLPPGAVIEQVRTLAARGHAEIVLTGVDLTSY-GCDLSGAPSLGALTKLILREV 222 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 L RLR ++ + L+ A + D LMP+LHL +QSG D ILK M RRH+ + Sbjct: 223 PELRRLRLSSIDSIEADRDLLDAVANEDRLMPHLHLSLQSGDDLILKRMKRRHSRADSVA 282 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + +R +RPDI + +D I GFP ETD F ++DL++ G + F YSPR GTP + Sbjct: 283 LCAELRRLRPDIVLGADLIAGFPTETDAAFTRSLDLIEDCGLSLLHVFPYSPRPGTPAAK 342 Query: 378 M--LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 M L+ V +A+RL + +++ DA +GQ +VLIE Sbjct: 343 MPPLDGVVIKERAKRLRAAGEAALRRRI---DAEIGQSRQVLIE 383 >gi|240850637|ref|YP_002972037.1| hypothetical protein Bgr_10900 [Bartonella grahamii as4aup] gi|240267760|gb|ACS51348.1| hypothetical protein Bgr_10900 [Bartonella grahamii as4aup] Length = 437 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 135/460 (29%), Positives = 214/460 (46%), Gaps = 43/460 (9%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + P+ FV S GC + DS R+ S+GYE AD++++NTC + A + Sbjct: 2 VAPRISFV-SLGCPKALVDSERIITRLRSEGYEISRQHQGADVVIVNTCGFLDSARRE-- 58 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + N+ + K G V+V GC+ A+ + I + P V + PQ Y + E + Sbjct: 59 ----SLANIDEALKKNGK---VIVTGCLG-ADPDVIRQTYPNVLAITKPQAYESVIEAVH 110 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A V D F L G R A+L I EGC C+FC++P RG Sbjct: 111 TA---------IPPVHDPFLDLVPPQGIRLTPRHY-AYLKISEGCSNQCSFCIIPTLRGD 160 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNV-----------NAWRGKGLDGEKCTFSDL 250 SR +S V+ EA KL+ GV E+ ++ Q+ N+W+ + + K F DL Sbjct: 161 LTSRPISDVLREAEKLVQAGVKELLVISQDTSAYGIDLKYLENSWKDRTI---KTKFFDL 217 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L ++ +R+ Y +P D +I+ +L PYL +P Q S IL+ M R Sbjct: 218 CRELGDMGIWIRMHYVYPYPH--VDEVIELMAAKKIL-PYLDIPFQHASPAILRHMKRPA 274 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + + I++ R + PD+ + S FIVGFPGET++DF ++ +++ +A FKY Sbjct: 275 LIEKTNRRIEKWRKICPDLTLRSTFIVGFPGETNEDFNILLEWLEEAKIERAGCFKYEEV 334 Query: 371 LGTPGSNM-LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK-EKGK 427 G +++ LE + E VK R K ++ +G+ ++VLI E GK KG+ Sbjct: 335 KGAAANDLGLENIPEEVKENRWHRFMAKQQQISTHLLKKKIGKRLQVLIDESQGKVAKGR 394 Query: 428 LVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYG 465 +P + VV S +G+ + V+I LYG Sbjct: 395 SQYDAPEIDGVVHISSRRPLRVGEFVSVKIEQSDAYDLYG 434 >gi|58039893|ref|YP_191857.1| putative oxidoreductase [Gluconobacter oxydans 621H] gi|58002307|gb|AAW61201.1| Putative oxidoreductase [Gluconobacter oxydans 621H] Length = 400 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 129/453 (28%), Positives = 197/453 (43%), Gaps = 73/453 (16%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N ++S M ++G + D I++NTC + A + + R Sbjct: 5 VLTFGCRLNAHESDGM--AHHARGQD--------DTIIVNTCAVTTTAERQARQAIRRAH 54 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +E D +VV GC + + P + LP ++ R Sbjct: 55 -------RENPDAKIVVTGCASD----------------IAPDRWAGLPGVV-------R 84 Query: 149 VVDTDYSVEDKFERLSIVD--GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 VV EDK + D G R A L +Q+GCD CTFC++PY RG S Sbjct: 85 VVPN----EDKLKPAIWGDTSAGLPPSRHARALLQVQQGCDHRCTFCIIPYGRGDSRSTP 140 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + + A L++ G EI L G ++ +W+G G G +LL + G+ RLR + Sbjct: 141 VEDAIARAEALVEAGHQEIVLTGVDIASWQGSGGKGLGALCRELLR---RVDGVRRLRLS 197 Query: 267 TSHPRDMSDCLIKAH-GDLDV---------LMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + P L+ A GD D+ LMP+LHL +Q+GSD ILK M RRH Sbjct: 198 SIDP-----VLLDAQTGDADLWWLLENEPRLMPHLHLSLQAGSDLILKRMKRRHDTAGVA 252 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 + R+RS+RP+ + +D I GFP ET+ F T +++ F YS R GTP + Sbjct: 253 ATLRRVRSIRPETGVGADLIAGFPTETNALFEETRAFIEEQQIPFLHVFPYSERPGTPAA 312 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 M V + +R CL+ + F +G ++L E + G SP Sbjct: 313 RM-PAVPNAERQKRAACLRDIGEANRDRFLQRLIGTEFDILAETPDR------GHSPEFA 365 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467 +V L G + VR T ++ TL E+ Sbjct: 366 AVRLTGTAPAPVRGSFVPVRATGLENGTLLAEI 398 >gi|167581733|ref|ZP_02374607.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia thailandensis TXDOH] Length = 463 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 128/465 (27%), Positives = 214/465 (46%), Gaps = 50/465 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ +G Sbjct: 21 SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77 Query: 91 KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146 + E G V+V GC+ A G ++ P V V GP + +++ + Sbjct: 78 ----LAENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQVV-HSHLP 130 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K D F L + G A+L I EGC+ C+FC++P RG +SR Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSRP 181 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 +++V+ EA L GV E+ ++ Q+ +A W G+ L K ++L+ +L Sbjct: 182 VAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 238 Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRH 310 E+ VRL Y +P + A G L D ++PYL +P Q +LK M R Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKDHVLPYLDVPFQHAHPDVLKRMKRPA 298 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 A + + + + R + PD+ I S FI GFPGET+ F +D + + + F YSP Sbjct: 299 NAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAELDRVGCFAYSPV 358 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 G + + + ++V+ R + E + + VG+ ++VLI++ +E G+ Sbjct: 359 EGASANELDGALPDDVREARRARFMEVAEEVSAARIERKVGKTLKVLIDEVNEEGGIGRT 418 Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 +P + VV SK + +GD + V+IT L+GE+ Sbjct: 419 AADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 463 >gi|46446860|ref|YP_008225.1| hypothetical protein pc1226 [Candidatus Protochlamydia amoebophila UWE25] gi|81626909|sp|Q6MBU9|RIMO_PARUW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|46400501|emb|CAF23950.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 475 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 121/451 (26%), Positives = 215/451 (47%), Gaps = 30/451 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + GYE ++++AD +V+NTC E + ++ + + + Sbjct: 42 SLGCPRNLVDSEVMLGILLKAGYEVAPTLEEADYLVINTCGFLEASRQESMDTVEEVLSQ 101 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + K ++V GC+ Q + + P ++ ++G + + ++ + G+ + Sbjct: 102 RKKTAK------LIVTGCMVQTHSDALKTTFPSIDYLLGSGDVEGILKAVQSTQKGQIIS 155 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 S ++ G +R T A+L I EGC K C +CV+P +G S+ Sbjct: 156 SAR----------SYLEAGEVPRRLSTPKHYAYLKIAEGCRKRCAYCVIPTIKGPLKSKG 205 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRY 265 Q++ E L+ GV E+ L+ Q++ + GK +K T +LL S+ EIK LR Sbjct: 206 KEQILKEFNLLLSQGVKEVILIAQDLGDY-GKDQGAKKLTALLNLLQSMLEIKQAFWLRL 264 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P +++D LI + PYL +P+Q +++ILKSM R + + +II ++R Sbjct: 265 LYLYPDEITDELIALMKSDSRICPYLDMPIQHVNNQILKSMRRATSKEDIIEIITKLRRE 324 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P++AI + IVGFPGET++ F+ + V FK+S G+ ++ Q+ + Sbjct: 325 IPNVAIRTSLIVGFPGETEEQFQELIQFVQDYPLENVGIFKFSREPGSHAYDLPNQISDE 384 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQSVVL 440 +K +R L + ++ +G+ I V++E + E G+ G+ P + VL Sbjct: 385 MKEDRYHRLMQVQKKVVKKNLKKMIGKKIAVVVEGYHPETELLMIGRHTGQCPDIDGQVL 444 Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELV 468 K G+I V ITDV L G ++ Sbjct: 445 INDGRKVKAFGEIYTVEITDVADYDLVGHVI 475 >gi|257463539|ref|ZP_05627932.1| MiaB-like tRNA modifying enzyme YliG [Fusobacterium sp. D12] gi|317061094|ref|ZP_07925579.1| 2-methylthioadenine synthetase [Fusobacterium sp. D12] gi|313686770|gb|EFS23605.1| 2-methylthioadenine synthetase [Fusobacterium sp. D12] Length = 444 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 128/442 (28%), Positives = 223/442 (50%), Gaps = 34/442 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 F S GC N+ DS + + + +G++ N +++AD++++NTC A ++ + Sbjct: 3 FAFISLGCSKNLVDSENLTGILVNRKGFQLTNDIEEADMVLINTCGFIGDAKKESIETIL 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + K +K+ +VV GC+AQ EE+L+ P ++ V+G ++ +++ Sbjct: 63 EVAEYKQQNLKK-----IVVCGCLAQRYAEELLQEIPEIDAVIGTGEIDKIERVVDEILQ 117 Query: 146 GKRVVDT---DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K+VV+T D+ +RL TA+L I EGC++ CT+C++P RG Sbjct: 118 DKKVVETKSFDFLPNADTDRLLTTPPH-------TAYLKISEGCNRRCTYCIIPQLRGNL 170 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGL 260 SRS +++EAR L+ GV E+ LL Q + G+D G+K DLL L +I+ L Sbjct: 171 RSRSKEDILEEARHLVAGGVRELNLLAQETTEY---GIDRYGKKA-LPDLLRELVKIEEL 226 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R P+ ++D LI + + Y +P+Q S +L+ M R T + ++++ Sbjct: 227 DWIRSYYMFPKSITDELIAVMKTEEKICKYFDIPIQHISSNVLRRMGRAITGEQTKELLY 286 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +IR P+ + IVGFPGET+++F V++ + F+YS T M Sbjct: 287 KIRREIPEAVFRTSLIVGFPGETEEEFEELKSFVEEFQFDYIGVFQYSREEDTLAYTMEA 346 Query: 381 QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRS 432 QV E +KA R L+ LQ ++ E + N +G+ +EVLI+ E +G+L ++ Sbjct: 347 QVPEEIKARRQAELINLQNEIAEAK---NRKLLGREVEVLIDGISSESEYMLEGRLKTQA 403 Query: 433 PWLQSVVLNSK-NHNIGDIIKV 453 + VL S+ +G+I+ V Sbjct: 404 LDIDGKVLTSEGTAQVGEIVHV 425 >gi|103486211|ref|YP_615772.1| hypothetical protein Sala_0718 [Sphingopyxis alaskensis RB2256] gi|123078538|sp|Q1GV83|RIMO_SPHAL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|98976288|gb|ABF52439.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256] Length = 455 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 131/466 (28%), Positives = 212/466 (45%), Gaps = 60/466 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ + GY AD++++NTC + A E+ +G Sbjct: 16 SLGCPKALVDSERILTKLRADGYGLSPDYAGADVVLVNTCGFLDSAKEESLEAIGEAMA- 74 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ + E + I R P V V G Y ++ E V Sbjct: 75 ENGR--------VIVTGCMGK-EADVIRARFPNVLAVTGAHQYEQVVEA---------VH 116 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D + F L + +GG ++L I EGC+ C FC++P RG +SR + V Sbjct: 117 DAAPPTQGPFVDL-VPEGGLKLTPRHYSYLKISEGCNHSCAFCIIPDLRGKLVSRRIDAV 175 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIK- 258 + EA KL+ G E+ ++ Q+ +A W G+ + + +DL L +++ Sbjct: 176 LREAEKLVAAGTKELLVISQDTSAYGVDIRHDPRQWHGREI---RAHMTDLARELGQLRT 232 Query: 259 -----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 VRL Y +P + + A G +L PYL +P Q S +LK M R Sbjct: 233 SEGRAPWVRLHYVYPYPHVDAVIPLMAEG---LLTPYLDIPFQHASPSVLKRMKRPANEA 289 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + + + R++ PDIAI S F+VGFPGET+ DF+ +D +++ + +F++ P G Sbjct: 290 KVLERLKSWRAIAPDIAIRSSFVVGFPGETEADFQYLLDWLEEAQLDRVGAFRFEPVAGA 349 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKL--V 429 + + E V + VK ER + K + +A +G+ + V+I++ G+ E G + Sbjct: 350 QANALPEPVPDEVKEERYQRIMAKTAAISAAKLEAKIGRTLPVIIDEVGEADEDGSIGAT 409 Query: 430 GRSP----------WLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 GRS +L+ V K GDI+ V I D L+G Sbjct: 410 GRSQADAPEIDGHVYLRDVAATLKA---GDIVDVEIEDADEHDLFG 452 >gi|302348200|ref|YP_003815838.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15] gi|302328612|gb|ADL18807.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15] Length = 437 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 132/448 (29%), Positives = 219/448 (48%), Gaps = 26/448 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++++++YGC ++ +DS M + GYE +AD+I++NTC +R K+ + Sbjct: 10 KYYIETYGCALSEFDSEIMRSILRGAGYEECKDPREADVIIVNTCAVRLDTEAKI---VK 66 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R++ L N +G L VV+GC+++A ILR +P ++V PQ R+ L+ Sbjct: 67 RLKEL-NGLSLQGKKL--VVSGCLSKARPSLILRTAPAASLV-SPQNVTRI---LDAVTL 119 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + D + F R A + I EGC + C+FC R S Sbjct: 120 DRPIYMLDGERDVNFLPKPPT-------RDSVATVMISEGCLENCSFCETKLARRYLKSY 172 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLR 264 +V R L+ G EI L GQ+ A+ G L G K DL+ L ++ G RLR Sbjct: 173 PPRAIVSIVRDLVQGGAREIRLTGQDAAAY-GVDLPG-KPRLPDLIADILDKVPGEYRLR 230 Query: 265 ---YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 T + ++ D L+ + D V + H+PVQSG DR+LK MNRR+T E++++ + Sbjct: 231 IGMMTPNQAMEIIDDLLDVYRDGRVFK-FFHIPVQSGDDRVLKIMNRRYTVAEFKELHSK 289 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +++ P ++D IVG PGE + F ++ LV+++ + + + +YS R T ++M Q Sbjct: 290 VKAKYPSSLFATDIIVGHPGEDEGAFMNSVRLVEELKFERVYLAQYSIRPRTASASM-PQ 348 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-KLVGRSPWLQSVVL 440 V E VK ER L +Q+ +++ V + VG L+ G +G V + V Sbjct: 349 VPEPVKKERSLRIQEVIKKIGVEIYGSYVGGRFRGLLASRGFREGFSTVRLDNYFPVAVP 408 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 S + G+ + V+IT L G +V Sbjct: 409 ASTLRSYGEFVDVKITGATYFDLRGVIV 436 >gi|320166116|gb|EFW43015.1| HSPC167 [Capsaspora owczarzaki ATCC 30864] Length = 712 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/212 (40%), Positives = 132/212 (62%), Gaps = 3/212 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F ++YGCQMNV D+ + + G+ER + AD+I+L TC IR+ A KV+S L Sbjct: 163 RKVFFETYGCQMNVNDTEIVWSILQGVGFERTLDVKQADVILLMTCAIRDNAERKVWSRL 222 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++++ R K+ V V GC+A+ ++L + +V+VV GP +Y LP LL A Sbjct: 223 NELKHMRLKRTKDQPISRVGVLGCMAERLKTQLLEKDQLVDVVAGPDSYRDLPRLLSIAN 282 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G + V+ S+++ + ++ V K VTAF++I GCD C+FC+VP+TRG E S Sbjct: 283 QGDQAVNVQLSLDETYADIAPV---RMSKDSVTAFVSIMRGCDNMCSFCIVPFTRGRERS 339 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236 R L+ +V+E R+L GV E+TLLGQNVN++R Sbjct: 340 RPLASIVEEVRQLARQGVREVTLLGQNVNSYR 371 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 105/188 (55%), Gaps = 2/188 (1%) Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 F++LL ++ + +R+R+T+ HP+D D ++ + LH+P QSGS +L+ M Sbjct: 435 FAELLRQVAAVDPEMRIRFTSPHPKDFPDDVLTVIASTANVCKSLHMPAQSGSTSVLERM 494 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R ++ Y +++ R+R + PD+ +SSDFI GF GET+ DF+ T+DL++K GY + F Sbjct: 495 RRGYSRESYLELVARVRRLIPDVTLSSDFIAGFCGETEADFKDTLDLIEKAGYEYGYLFG 554 Query: 367 YSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE- 424 YS R T +++ V +VK +RL + + VG VL+E+ + Sbjct: 555 YSMREKTHAHRKLVDDVPADVKNQRLKEMIASFYARSEQSLSRFVGSRQLVLVERPSRRA 614 Query: 425 KGKLVGRS 432 K +L GRS Sbjct: 615 KDQLTGRS 622 >gi|323526085|ref|YP_004228238.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1001] gi|323383087|gb|ADX55178.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1001] Length = 461 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 132/473 (27%), Positives = 217/473 (45%), Gaps = 56/473 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ +G Sbjct: 14 RIGIVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 73 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLE 141 N +N + V+V GC+ A G ++ P V V GP + + E+++ Sbjct: 74 EALN-ENGK--------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGP---HAVGEVMQ 121 Query: 142 RARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 V T D F L G R A+L I EGC+ CTFC++P RG Sbjct: 122 H-------VHTHLPKPHDPFVDLVPAAGVKLTPRHY-AYLKISEGCNHRCTFCIIPSMRG 173 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSD 249 +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K +D Sbjct: 174 DLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMTD 230 Query: 250 LLYSLSEIKG----LVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 L+ +L E+ VRL Y +P D ++ A ++PYL +P Q +LK Sbjct: 231 LVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAAGPYKGHVLPYLDVPFQHAHPEVLK 290 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 M R A + + + R + PD+ I S FI GFPGET++ F +D + + + Sbjct: 291 RMKRPANAEKVMERVKAWRDMCPDLTIRSTFIAGFPGETEEQFETLLDFIREAELDRVGC 350 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 F YSP G + + + + V+ ER + E VG+ ++VL+++ + Sbjct: 351 FAYSPVEGASANELDGALPDEVREERRARFMEVAEEVSAKRIAKKVGKTLKVLVDEVNAD 410 Query: 425 KGKLVGRSP----------WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 G VGR+ ++ V SK + +GD + V+IT L+GE+ Sbjct: 411 GG--VGRTAADAPEIDGVVYIAPAVKASKRYKVGDFVSVKITGADGHDLWGEV 461 >gi|119356260|ref|YP_910904.1| RNA modification protein [Chlorobium phaeobacteroides DSM 266] gi|119353609|gb|ABL64480.1| RNA modification enzyme, MiaB family [Chlorobium phaeobacteroides DSM 266] Length = 446 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 113/366 (30%), Positives = 183/366 (50%), Gaps = 43/366 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI-RN 89 + GC++N +S + D+ +G+E + + DLI++NTC + ++A +K + +I R+ Sbjct: 8 TLGCKLNYAESSAILDLLSKKGWEISSYEKNEDLIIINTCAVTKQAEQKCRQKIRKIIRD 67 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP------------ 137 SRI VV GC AQ E+L + VN ++G Y LP Sbjct: 68 NPGSRI--------VVTGCYAQLS-PEVLCKIDGVNAILGSSDKYALPLYEVIGNIESSL 118 Query: 138 ELLERARFGK-RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 L+ + K + + YS+ F R R AFL IQ+GCD C +C +P Sbjct: 119 PLISVSEIKKEKTIFPGYSLPATF--------ASERTR---AFLKIQDGCDYGCAYCTIP 167 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 + RG S S ++ +A L+ +G EI L G N+ +R +G+ + LL L + Sbjct: 168 FARGRSRSFSPDDIIAQASALVASGYREIVLTGVNIGDYRYRGV-----RLAALLRMLEK 222 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + + R+R ++ P + D LI +++ P+ HLP+QSGSD +L++M RR+ YR Sbjct: 223 VP-VARIRISSIEPDILDDALIAVVAASEIIAPHFHLPLQSGSDAVLRAMCRRYDTAGYR 281 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 Q I R D ++SSD +VG+PGE+ DD+R ++ + + F S R PG+ Sbjct: 282 QRILRAVEAIADCSVSSDVMVGYPGESADDYRNMYRFLEGLPISSLHVFSCSVR---PGT 338 Query: 377 NMLEQV 382 + EQV Sbjct: 339 QLAEQV 344 >gi|94310303|ref|YP_583513.1| hypothetical protein Rmet_1361 [Cupriavidus metallidurans CH34] gi|122987974|sp|Q1LNN2|RIMO_RALME RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|93354155|gb|ABF08244.1| conserved hypothetical protein [Cupriavidus metallidurans CH34] Length = 456 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 135/478 (28%), Positives = 220/478 (46%), Gaps = 64/478 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P + S GC + DS ++ ++GY + D ADL+V+NTC ++A ++ Sbjct: 10 PPKVGFVSLGCPKALVDSEQIITQLRAEGYSISGTYDGADLVVVNTCGFIDEAVQESLDA 69 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G +I+ P V V GP + L E+ Sbjct: 70 IGEA-------LTENGK--VIVTGCLGAKKDAAGHDIVSAVHPKVLAVTGP---HALGEV 117 Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++ V T D F L + G A+L I EGC+ C+FC++P Sbjct: 118 MQ-------AVHTHLPKPHDPFTDL-VPAAGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 169 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR +++V+ EA L GV E+ ++ Q+ +A W G+ L K Sbjct: 170 RGDLVSRPVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRM 226 Query: 248 SDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 ++L+ +L E+ VRL Y +P D +I +VL PYL +P+Q +L Sbjct: 227 TELVAALGELASQYGAWVRLHYVYPYPH--VDEIIPLMNQGNVL-PYLDVPLQHAHPDVL 283 Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 K M R A + +DRIR+ R PD+ I S FI GFPGET+++F+ +D + + Sbjct: 284 KRMKRPANA---EKTLDRIRAWREVCPDLTIRSTFIAGFPGETEEEFQTLLDFIAEAELD 340 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + F YSP G +++ + + V+ ER + E VGQ + VL+++ Sbjct: 341 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAEEVSARRLQRKVGQTLRVLVDE 400 Query: 421 HGKEKGKLVGRSP----------WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ G +GRS ++ S+ + GD + V+IT L+GE+ Sbjct: 401 VNQDGG--IGRSSADAPEIDGLVYIDPAAKASQRYKTGDFVNVKITGADGHDLWGEVA 456 >gi|119383150|ref|YP_914206.1| MiaB-like tRNA modifying enzyme [Paracoccus denitrificans PD1222] gi|119372917|gb|ABL68510.1| MiaB-like tRNA modifying enzyme [Paracoccus denitrificans PD1222] Length = 420 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 127/433 (29%), Positives = 202/433 (46%), Gaps = 39/433 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M +M + G + +++NTC + +A K + R+ Sbjct: 11 TLGCRLNAYETEAMREMAEAAGLQ--------GAVIVNTCAVTAEAVRKARQEIRRL--- 59 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRL--PELLERA 143 +E V+V GC AQ E E + + V+ + P T+ + P+L+ Sbjct: 60 ----ARENPGAPVIVTGCAAQTEPETFAAMAEVSRVIGNHEKMQPATWAAMQAPDLIGET 115 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K VD SV++ L +DG + R R A++ +Q GCD CTFC++PY RG Sbjct: 116 E--KVQVDDIMSVKETAGHL--IDG-FGRHR---AYVQVQNGCDHRCTFCIIPYGRGNSR 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S VVD+ ++L D G E+ L G ++ +W G L G+ ++ L + L RL Sbjct: 168 SVPAGVVVDQIKRLRDRGFNEVVLTGVDLTSW-GADLPGQPRLGDLVMRILRLVPDLPRL 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ + + L+ A LMP+LHL +Q+G D ILK M RRH + + + R Sbjct: 227 RISSIDSIEADENLMLAIATEPRLMPHLHLSLQAGDDMILKRMKRRHLRDDAIRFCEEAR 286 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +RP IA +D I GFP ET+ F ++ LV+ G F YS R GTP + M Sbjct: 287 RLRPGIAFGADIIAGFPTETEAMFENSLKLVEDCGLTFLHVFPYSARKGTPAARMPRVPG 346 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 +K ER L+ A +G+ VL E G +GR+ V + + Sbjct: 347 PAIK-ERAARLRAAGDAALARHLQAQLGEARMVLTE------GPRLGRTEHFTEVAFD-R 398 Query: 444 NHNIGDIIKVRIT 456 + G ++ +RI Sbjct: 399 DMPEGTLMALRIA 411 >gi|332992975|gb|AEF03030.1| MiaB-like tRNA modifying enzyme YliG [Alteromonas sp. SN2] Length = 480 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 129/410 (31%), Positives = 198/410 (48%), Gaps = 32/410 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY+ V + +DADL+++NTC + A E+ +G Sbjct: 43 SLGCPKNLVDSERILTQLRTEGYDVVPTYNDADLVIVNTCGFIDAAVEESLDTIGEA--- 99 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI P V + GP Y + E + + Sbjct: 100 ----LKENGK--VIVTGCLGIKE-DEIREVHPNVLAITGPHAYESVVEQVHEHLPKPQ-- 150 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + FE L + D G A+L I EGC+ CTFC++P RG +SR + V Sbjct: 151 ------HNPFEHL-VPDHGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGSV 203 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVR 262 +DEA++L GV E+ ++ Q+ +A+ R DG K L L E+ VR Sbjct: 204 LDEAKRLKSAGVKELLVISQDTSAYGVDVKHRTGFWDGMPVKTHMQQLCEKLGEMGIWVR 263 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P D LI + +L PYL +P Q + RIL+ M R +A + + + Sbjct: 264 LHYVYPYPH--VDDLIPLMNEGKIL-PYLDIPFQHANKRILRLMKRPGSADRTLERVKKW 320 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P + I S FIVGFPGET+++F +D + + + +F YSP G +++ + V Sbjct: 321 REACPSLVIRSTFIVGFPGETEEEFEELLDFIREAQLDRVGAFAYSPVEGARANDLPDPV 380 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 E+VK ERL + E A +G +V+I+ E VGR+ Sbjct: 381 PEDVKQERLARFMEVQGEISAQRLQARIGNEYQVVIDSVDSEGA--VGRT 428 >gi|167772333|ref|ZP_02444386.1| hypothetical protein ANACOL_03710 [Anaerotruncus colihominis DSM 17241] gi|167665436|gb|EDS09566.1| hypothetical protein ANACOL_03710 [Anaerotruncus colihominis DSM 17241] Length = 441 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 127/441 (28%), Positives = 205/441 (46%), Gaps = 22/441 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + F GYE V AD+ V+N+C + +K L R R L Sbjct: 7 TLGCKVNQYEAQILAQQFADAGYEIVPPEAPADVYVVNSCTVTASGDQKTRRVLRRFRTL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--FGKR 148 D VV+ GC QA ++ R + +V+ G + L EL+ RAR G+ Sbjct: 67 CP-------DATVVLTGCYPQAFPDDAARLAE-ADVIAGARDRAALVELVRRARETRGRI 118 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V + + FE + R+R AF+ I++GCD++C +C++P RG S+ Sbjct: 119 VAVAPHERGEPFEPMR---AAAFRER-TRAFVKIEDGCDRYCAYCIIPQARGPVRSKPPG 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++ E L G E L+G N+ ++ R GL D + + G+ R+R + Sbjct: 175 ELRAELEGLARAGYREAVLVGINLPSYGRELGL-----RLIDAVELACAVGGIERVRLGS 229 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D I L P HL +QSG D L M R + EY +I+ +R+ Sbjct: 230 LEPELLTDDDIARMARQPKLCPQFHLSLQSGCDATLARMRRHYDTAEYMRIVRALRAHFE 289 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + AI++D +VGFPGETD +F ++ V+ +G A+A F YS R GT ++M Q+ VK Sbjct: 290 NCAITTDVMVGFPGETDAEFGQSLCFVESLGLAKAHVFAYSRRPGTRAADMPGQLPGAVK 349 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447 R + + + +F G+ + VL E ++ G G + V + + Sbjct: 350 EARSARMIEATDRTRAAFLAGQAGRTVGVLFET--RDGGAFDGYAENYTPVRVFTDEDLR 407 Query: 448 GDIIKVRITDVKISTLYGELV 468 G I +V IT + G L Sbjct: 408 GQIRRVLITSADGARCVGTLA 428 >gi|296532248|ref|ZP_06894992.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseomonas cervicalis ATCC 49957] gi|296267418|gb|EFH13299.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Roseomonas cervicalis ATCC 49957] Length = 451 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 119/392 (30%), Positives = 185/392 (47%), Gaps = 25/392 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S+GC++N Y+S M + G+ D +++NTC + +A + + R Sbjct: 38 VLSFGCRLNTYESTAMRALALRAGHR--------DAVLVNTCAVTAEAERQARKAIRRAH 89 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +E + ++V GC AQ E P V V+G + PE Sbjct: 90 -------REQPGVPILVTGCAAQISPESWAA-LPGVARVIGNADKLK-PEAWAPEASPAP 140 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V D + E ++ G R R AF+ +Q+GCD CTFCV+PY RG S + Sbjct: 141 VTDIMAATETAAHLVTDFAG---RAR---AFVQVQQGCDHRCTFCVIPYGRGPSRSVPMG 194 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 VV++AR L+ G E+ L G ++ ++ G L G L+ + L RLR ++ Sbjct: 195 AVVEQARALVARGYNELVLTGVDITSY-GPDLPGRPTLGQLARRLLALLPELQRLRLSSL 253 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ + L + LMP+LHL +Q G D +LK M RRH+ + R R +RP Sbjct: 254 DPVEIDEDLWRLIAGEPRLMPHLHLSLQHGDDVMLKRMKRRHSRADALACARRARDLRPG 313 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 IA +D I GFP ET+ F ++LV++ G F YS R GTP + M Q+ ++ Sbjct: 314 IAFGADLIAGFPTETEAHFTRMLELVEEAGLHFLHVFPYSERPGTPAARM-PQLPVPLRR 372 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 ER L++ F ++ +GQ VL+E+ Sbjct: 373 ERATRLREAGAAAARRFYESRLGQEETVLLER 404 >gi|58696768|ref|ZP_00372305.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Drosophila simulans] gi|58537042|gb|EAL60178.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Drosophila simulans] Length = 375 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 121/401 (30%), Positives = 204/401 (50%), Gaps = 28/401 (6%) Query: 67 LNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV 126 +++C + +A +V + +I KN KE ++V GC Q + E+ P V+ Sbjct: 1 MHSCAVTNEAERQVKQKIRKI--YKNDPNKE-----IIVVGCAVQLD-PEVYSSIPGVSK 52 Query: 127 VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGC 186 V+G Q + L +++ +D VE +++G ++ R AF+ IQ GC Sbjct: 53 VLGNQDKLKAENYLLN---DDKILVSDNQVEP-----VLINGFEDKSR---AFIEIQNGC 101 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246 + CTFC + RG S ++ ++++ R ++NG E+ G ++ + G L G+ Sbjct: 102 NHSCTFCSITEARGNNRSVPINSIIEQIRIFVENGYQEVVFTGVDITDF-GTDLLGKPSL 160 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 S + L +I L RLR ++ ++ D L+ + LMP+LHL +QSG++ ILK M Sbjct: 161 GSMIRRVLKDIPELKRLRLSSIDVAEVDDELMDLIANESRLMPHLHLSLQSGNNLILKRM 220 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 RRH + + +++S+RP+IA +D I GFP ETD+ F+ T+DL+ K +F Sbjct: 221 KRRHNREQVIEFCHKMKSLRPNIAFGADIIAGFPTETDEMFQDTVDLLKKTNIVYLHAFP 280 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 YS R TP + M QV ENV+ ER+ L++ +E SF + + VL+E++ Sbjct: 281 YSERKNTPAARM-PQVPENVRKERVKNLREVNKEIMSSFCQSLINTKQSVLVEQNN---- 335 Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 VGR+ + L SK I+KV + V+ + L G + Sbjct: 336 --VGRAENFALIKLESKAQ-AKSIVKVNVKGVENNYLIGNI 373 >gi|328907267|gb|EGG27033.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium sp. P08] Length = 481 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 138/466 (29%), Positives = 210/466 (45%), Gaps = 58/466 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + + G++ V+ +A+ IV+NTC E+A + L +L Sbjct: 14 SMGCARNDVDSEELAARMEAGGFQLVDDPAEAETIVVNTCGFIEQAKKDSVDTLLAAADL 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY----YRLPELLERARFG 146 K + G VV GC+A+ G E+ P N V+G Y RL +L+ Sbjct: 74 KGN----GTTTSVVAVGCMAERYGRELAESLPEANAVLGFDDYDDIAGRLRTILDGGSIE 129 Query: 147 KRV-----------------------VDTDYSVEDKFERLSIVDGGYNRKR----GVTAF 179 RV V + D ++ G +R G +A Sbjct: 130 ARVPRDRRALLPISPVDRPTVRAGVSVPGHGTAPDLQASVAPAAGPRATRRRLETGPSAP 189 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L + GCD+ C FC +P RG +SR +++V+EAR L+D+GV E+ L+ +N +++ GK Sbjct: 190 LKMASGCDRRCAFCAIPRFRGSYLSRPTTEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 248 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL +L ++ GL +R + P ++ LI + ++PY L Q S Sbjct: 249 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTMLATNKVVPYFDLSFQHAS 307 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+ M R A + IID IRS PD S+FI+GFPGETD D D + + Sbjct: 308 GPLLRRMRRFGDAESFLNIIDSIRSRCPDAGFRSNFIIGFPGETDADIAVLTDFLQRARL 367 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 A F YS GT G+ + VDE++ R RE D V Q E I Sbjct: 368 DAAGIFAYSDEEGTEGAKLDRHVDEDLIGAR--------REVLADLTDELVSQRAEDRIG 419 Query: 420 KHGK------EKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453 G+ ++G +VGR+ P + VV +++ +GDI+ V Sbjct: 420 TRGRVMVEEIDEG-VVGRAEHQGPEVDGVVTLVDAPAVGVGDIVDV 464 >gi|313837176|gb|EFS74890.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL037PA2] gi|314927803|gb|EFS91634.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL044PA1] gi|314971948|gb|EFT16046.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL037PA3] Length = 474 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 138/466 (29%), Positives = 210/466 (45%), Gaps = 58/466 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + + G++ V+ +A+ IV+NTC E+A + L +L Sbjct: 7 SMGCARNDVDSEELAARMEAGGFQLVDDPAEAETIVVNTCGFIEQAKKDSVDTLLAAADL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY----YRLPELLERARFG 146 K + G VV GC+A+ G E+ P N V+G Y RL +L+ Sbjct: 67 KGN----GTTTSVVAVGCMAERYGRELAESLPEANAVLGFDDYDDIAGRLRTILDGGSIE 122 Query: 147 KRV-----------------------VDTDYSVEDKFERLSIVDGGYNRKR----GVTAF 179 RV V + D ++ G +R G +A Sbjct: 123 ARVPRDRRALLPISPVDRPTVRAGVSVPGHGTAPDLQASVAPAAGPRATRRRLETGPSAP 182 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L + GCD+ C FC +P RG +SR +++V+EAR L+D+GV E+ L+ +N +++ GK Sbjct: 183 LKMASGCDRRCAFCAIPRFRGSYLSRPTTEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL +L ++ GL +R + P ++ LI + ++PY L Q S Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTMLATNKVVPYFDLSFQHAS 300 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+ M R A + IID IRS PD S+FI+GFPGETD D D + + Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPDAGFRSNFIIGFPGETDADIAVLTDFLQRARL 360 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 A F YS GT G+ + VDE++ R RE D V Q E I Sbjct: 361 DAAGIFAYSDEEGTEGAKLDRHVDEDLIGAR--------REVLADLTDELVSQRAEDRIG 412 Query: 420 KHGK------EKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453 G+ ++G +VGR+ P + VV +++ +GDI+ V Sbjct: 413 TRGRVMVEEIDEG-VVGRAEHQGPEVDGVVTLVDAPAVGVGDIVDV 457 >gi|307298742|ref|ZP_07578545.1| MiaB-like tRNA modifying enzyme [Thermotogales bacterium mesG1.Ag.4.2] gi|306915907|gb|EFN46291.1| MiaB-like tRNA modifying enzyme [Thermotogales bacterium mesG1.Ag.4.2] Length = 425 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 119/402 (29%), Positives = 203/402 (50%), Gaps = 28/402 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + Q+ + ++GC+MN Y+S M +M YE S D ADL ++N+C + +A K+ Sbjct: 1 MKQKVSIYTFGCKMNQYESQAMAEML--HDYEVGFSQDKADLFIVNSCTVTSEAERKLRQ 58 Query: 83 FLGRIRNLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 R++ L NS+I ++ GC +Q E+ R + V+G + + + + Sbjct: 59 LFRRLKGLNPNSKI--------IITGCYSQLSPNEL--RELGADEVIGVREKKAIHKYVS 108 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R ++ D +F L++ R R AFL I++GC C++C V RG Sbjct: 109 R-----QLNRPDGVAPSEF--LTVTSSIEGRTR---AFLGIEDGCLNCCSYCRVRLARGS 158 Query: 202 EI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 +I S+ + V E L+ G EI L G N+ + G LD + LL L +++G Sbjct: 159 KIISKPIDLVKREFEGLVSRGYREIVLTGINIGYY-GFDLDS---SLVKLLIELDKLEGE 214 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + L+ + +LHL +QSGS+RIL++M R++T EY + +D Sbjct: 215 WRIRLGSLDPDRVDGELLHLITTSRRMARHLHLSLQSGSNRILRAMRRKYTVDEYLRAVD 274 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R RSV A ++D I GFPGE D D + ++ +V+++ + + F++S R GT + M + Sbjct: 275 RARSVDTRFAFTTDLIAGFPGENDSDHKESLKVVEQVEFLKVHVFRFSRRPGTEAAEMKD 334 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 Q+D K R L + + + + + +G+ VLI+K G Sbjct: 335 QIDSGTKKARSHELIEAGKRSRKKYLERQIGRKACVLIQKTG 376 >gi|239996912|ref|ZP_04717436.1| MiaB-like tRNA modifying enzyme YliG [Alteromonas macleodii ATCC 27126] Length = 484 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 130/413 (31%), Positives = 197/413 (47%), Gaps = 38/413 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY+ V + +DADL+++NTC + A E+ +G Sbjct: 43 SLGCPKNLVDSERILTQLRTEGYDVVPTYNDADLVIVNTCGFIDAAVEESLDTIGEA--- 99 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI P V + GP Y + E + + Sbjct: 100 ----LKENGK--VIVTGCLGVKE-DEIRELHPNVLAITGPHAYETVVEQVHDHLPKPQ-- 150 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + FE L I D G A+L I EGC+ CTFC++P RG +SR + V Sbjct: 151 ------HNPFEDL-IPDHGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGNV 203 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 +DEA++L D GV E+ ++ Q+ +A W G + K L L E+ Sbjct: 204 LDEAKRLKDAGVKELLVISQDTSAYGVDVKHRTGFWNGMPV---KAHMQQLCEKLGEMGI 260 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P D LI + +L PYL +P Q + RILK M R +A + + Sbjct: 261 WVRLHYVYPYPH--VDDLIPLMNEGKIL-PYLDIPFQHANKRILKLMKRPGSAERVLERV 317 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R P + I S FIVGFPGET+++F +D + + + +F YSP G +++ Sbjct: 318 KKWREQCPSLVIRSTFIVGFPGETEEEFEELLDFLREAQLDRVGAFAYSPVEGARANDLP 377 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 + V E VK RL + E + A +G +V+I+ E VGR+ Sbjct: 378 DPVPEEVKQARLARFMEVQGEISAARLQARIGNEYQVVIDSVDAEGA--VGRT 428 >gi|78187582|ref|YP_375625.1| MiaB-like tRNA modifying enzyme [Chlorobium luteolum DSM 273] gi|78167484|gb|ABB24582.1| MiaB-like tRNA modifying enzyme [Chlorobium luteolum DSM 273] Length = 438 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 106/346 (30%), Positives = 171/346 (49%), Gaps = 19/346 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N +S + G+ + ADL++++TC + +A +K +IR L Sbjct: 10 TLGCKLNYAESSSILQGLVEGGWVACGPEEGADLLIVHTCAVTGQAEQKCRQ---KIRQL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I+ + V V GC AQ E+L V+ V G + + L L A+ G+ + Sbjct: 67 ----IRRNPECRVAVIGCYAQLS-PEVLGGIEGVDAVFGNKEKFDLDRYLAVAKGGRSAL 121 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRG---VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 RL G + G AFL IQ+GCD C +C +P RG S Sbjct: 122 PA--VAAGSVSRLQTASPGCSPPAGSGRTRAFLKIQDGCDYLCAYCTIPLARGRSRSIEP 179 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 V+ +A +L +G EI L G N +R G+D F LL L E+ + R+R ++ Sbjct: 180 EDVLRQAHRLAGSGYREIVLSGVNTGDYRSGGVD-----FPALLRMLEEVP-VSRIRISS 233 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P +S ++ G ++P+ HLP+QSGSD +L++M RR+TA YR+ + +R V P Sbjct: 234 LEPDMLSPAFLQVVGSSARIVPHFHLPLQSGSDPVLRAMRRRYTAEGYRRAVHALREVLP 293 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 A+ +D +VG+PGE ++DF+A ++++ + F S R GT Sbjct: 294 GCAVGADVMVGYPGEEEEDFQAMYGFIEQLPLSYLHVFSCSVRPGT 339 >gi|327310209|ref|YP_004337106.1| MiaB family RNA modification protein [Thermoproteus uzoniensis 768-20] gi|326946688|gb|AEA11794.1| RNA modification enzyme, MiaB family [Thermoproteus uzoniensis 768-20] Length = 416 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 138/454 (30%), Positives = 218/454 (48%), Gaps = 54/454 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R +V++YGC + D+ + + G S DADL+++ TC +RE G Sbjct: 2 RIYVETYGCWLAKADA---QILLQRLGGAVAESPRDADLVLVYTCAVRED---------G 49 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +R L+ +VVAGC+A+A R I V + Y PE +E Sbjct: 50 EVRQLRRLGQLASESKRLVVAGCLAKA------RPYTIRQVAKNAELLY--PEQVEGGEG 101 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG---IE 202 V L DGG + + +Q GC CTFC+ YTRG Sbjct: 102 RSMSV------------LPEPDGG------LIYTVPLQVGCLGNCTFCITKYTRGGAGYV 143 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---KCTFSDLLYS-LSEIK 258 S VV+ +K + G EI L GQ+V + G D DLL LS+++ Sbjct: 144 KSAPPDLVVEYVKKAVAKGAKEIYLTGQDVITY---GFDARWRRGWNLPDLLEKILSQVE 200 Query: 259 GLVRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 G R+R S P +D ++ + + Y HLPVQSGSD +L+ M RR+TA EY Sbjct: 201 GDYRIRIGMSEPWVFGKFADAILDIVKRDERVYRYFHLPVQSGSDEVLRRMGRRYTADEY 260 Query: 316 RQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 R +I +I R + D+ +++D IVGFPGET++DFRAT+ L++++ + + +YS R T Sbjct: 261 RGLISKIKRELNDDVFVATDVIVGFPGETEEDFRATLRLMEELEFDKVHVARYSRRPFTE 320 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 S M EQ+ + VK +R + + + N +G+ ++VL+++ + G +VGR+P Sbjct: 321 ASVMPEQIPDAVKKQRSKIASELALKIAHARNSRLIGRRLKVLVDE--VDHGLVVGRAPD 378 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + VV+ +G ++V I + L+ + V Sbjct: 379 YRQVVVGRGEGPLGSFLEVEIERAEPVYLWAKGV 412 >gi|209520560|ref|ZP_03269316.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. H160] gi|209498997|gb|EDZ99096.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. H160] Length = 476 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 137/490 (27%), Positives = 222/490 (45%), Gaps = 65/490 (13%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 M S + P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC Sbjct: 17 MSSTPSNALATPKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGF 75 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVV 128 ++A ++ +G + E G V+V GC+ A G ++ P V V Sbjct: 76 IDEAVQESLDAIGEA-------LSENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVT 126 Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188 GP + E+++ V + D F L G R A+L I EGC+ Sbjct: 127 GPHA---VGEVMQA------VHNHLPKPHDPFVDLVPAAGVKLTPRHY-AYLKISEGCNH 176 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRG 237 CTFC++P RG +SR +++V+ EA L +GV E+ ++ Q+ +A W G Sbjct: 177 RCTFCIIPSMRGDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNG 236 Query: 238 KGLDGEKCTFSDLLYSLSEIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVL 287 K + K +DL+ +L E+ VRL Y +P M++ K H + Sbjct: 237 KPI---KTRMTDLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPYKGH-----V 288 Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347 +PYL +P Q +LK M R A + + + R + PD+ I S FI GFPGET++ F Sbjct: 289 LPYLDVPFQHAHPEVLKRMKRPANAEKVMERVKAWREICPDLTIRSTFIAGFPGETEEQF 348 Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407 +D + + + F YSP G + + + + V+ ER + + Sbjct: 349 ETLLDFIREAELDRVGCFAYSPVEGASANELDGALPDEVREERRARFMEVAEQVSAKRIA 408 Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITD 457 VG+ ++VL+++ + G VGR+ P + VV SK + +GD + V+IT Sbjct: 409 KKVGKTLKVLVDEINADGG--VGRTAADAPEIDGVVYIAPTTKASKRYKVGDFVSVKITG 466 Query: 458 VKISTLYGEL 467 L+GE+ Sbjct: 467 ADGHDLWGEV 476 >gi|237720003|ref|ZP_04550484.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229450555|gb|EEO56346.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 439 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 121/433 (27%), Positives = 213/433 (49%), Gaps = 29/433 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 +K+ D VVV GC AQ + ++ + V+VV+G + L + L ++ G+ Sbjct: 73 ----VKQHPDAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + T + S D R R FL +Q+GCD FC++C +P+ RG + ++ Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++AR+ G EI L G N+ + GK GE +F DL+ +L +++G+ R R ++ Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVEGIERYRISS 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D +I+ MP+ H+P+QSG D +L+ M RR+ + + +I+ V P Sbjct: 237 IEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVKKIKEVMP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384 D I D IVG GET + F +D + Q F YS R GT ++ ++ Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + +++RLL L + + +F +GQ + VL+EK K + G + V + S + Sbjct: 357 HQRSQRLLALSDQKTQ---AFYARHIGQTMPVLMEK-SKAGAPMHGFTENYIRVEVESDD 412 Query: 445 HNIGDIIKVRITD 457 ++ VR+ D Sbjct: 413 SLDNQVVNVRLGD 425 >gi|254437866|ref|ZP_05051360.1| MiaB-like tRNA modifying enzyme [Octadecabacter antarcticus 307] gi|198253312|gb|EDY77626.1| MiaB-like tRNA modifying enzyme [Octadecabacter antarcticus 307] Length = 424 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 109/355 (30%), Positives = 177/355 (49%), Gaps = 31/355 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ + G + + +++NTC + +A K + ++R Sbjct: 11 TLGCRLNAYETEAMKELAGAAGVQ--------NAVIVNTCAVTAEAVRKAKKEIRKLR-- 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLERA 143 +E D ++V GC AQ E E + P V+ V+G T+ + P+L+ + Sbjct: 61 -----RENPDATLIVTGCAAQTEPETFIAM-PEVSKVIGNTEKMQAATWAGMAPDLIGQT 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + VD SV + L +DG R R A++ +Q GCD CTFC++PY RG Sbjct: 115 EPVQ--VDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSR 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S VV++ ++L+ G EI L G ++ +W G L ++ L + L RL Sbjct: 168 SVPAGVVVEQIKRLVGKGYNEIVLTGVDLTSW-GADLPVLPKLGDLVMRILKLVPDLPRL 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ ++ D L++A LMP+LHL +Q G D +LK M RRH + + + R Sbjct: 227 RISSIDSIEVDDNLMRAIATEPRLMPHLHLSLQHGDDLMLKRMKRRHLRDDAIKFSEDAR 286 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +RPD+ +D I GFP ET+ F ++ LVD F YSPR GTP + M Sbjct: 287 KLRPDMTFGADIIAGFPTETEAHFENSLKLVDDCALTWLHVFPYSPRHGTPAARM 341 >gi|32477342|ref|NP_870336.1| hypothetical protein RB12138 [Rhodopirellula baltica SH 1] gi|32447893|emb|CAD77411.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 428 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 116/403 (28%), Positives = 202/403 (50%), Gaps = 38/403 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ GC++N Y++ + + GYE + + ADL ++NTC + E K + Sbjct: 4 KLRTRTLGCKVNQYETELVRQGLQTIGYEDASDGESADLCIVNTCTVTETGDAKSRQVVR 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R+ +E D +VV GC A EE+ +V V+ + L +L+ RF Sbjct: 64 RLN-------RENPDARIVVMGCYATRAPEEVSALPGVVEVLTDKR---ELGDLM--GRF 111 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G V T S G RKR A++ +Q+GC C++C++P R SR Sbjct: 112 GVIDVPTGLS------------GFAGRKR---AYVKVQDGCLLRCSYCIIPMVRPKLHSR 156 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLV 261 ++VDE +L+D G E+ L G ++ W E + L+ L +I G Sbjct: 157 PSQEIVDEVTRLVDAGHREVILTGIHLGHYGVDWNRNKPREEWVRLAHLVKDLCQIPGQF 216 Query: 262 RLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R ++ +++ LI + + ++P+LHL +QSGSD +L+ M RR + + +D Sbjct: 217 RIRMSSIEATEVTRELIGVMAEFPEKVVPHLHLCLQSGSDSVLRRMRRR---WGTKMFLD 273 Query: 321 RIRSVRPDI---AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 R R +R + AI++D I GFPGET+++F T+ + G+++ +F YS R GTP + Sbjct: 274 RCRLLRESLDRPAITTDIIAGFPGETEEEFEQTLRTCREAGFSKIHAFPYSARRGTPAAE 333 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 +Q+D+ + +ER+ L + E + + VG +E+L+E+ Sbjct: 334 RDDQLDKGLISERVDRLGEVEAELRQQYYKTLVGSNLELLVEE 376 >gi|237714843|ref|ZP_04545324.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262406886|ref|ZP_06083435.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22] gi|294647146|ref|ZP_06724745.1| MiaB-like protein [Bacteroides ovatus SD CC 2a] gi|229445168|gb|EEO50959.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355589|gb|EEZ04680.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22] gi|292637433|gb|EFF55852.1| MiaB-like protein [Bacteroides ovatus SD CC 2a] Length = 439 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 123/447 (27%), Positives = 221/447 (49%), Gaps = 31/447 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 +K+ D VVV GC AQ + ++ + V+VV+G + L + L ++ G+ Sbjct: 73 ----VKQHPDAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + T + S D R R FL +Q+GCD FC++C +P+ RG + ++ Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++AR+ G EI L G N+ + GK GE +F DL+ +L +++G+ R R ++ Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVEGIERYRISS 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D +I+ MP+ H+P+QSG D +L+ M RR+ + + +I+ V P Sbjct: 237 IEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVKKIKEVMP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384 D I D IVG GET + F +D + Q F YS R GT ++ ++ Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + +++RLL L ++ +F +GQ + VL+EK K + G + V + S + Sbjct: 357 HQRSQRLLALSD---QKTQAFYARHIGQTMPVLMEK-SKAGAPMHGFTENYIRVEVESDD 412 Query: 445 HNIGDIIKVRITDV--KISTLYGELVV 469 +I VR+ + +++ L G +++ Sbjct: 413 SLDNQVINVRLGEFNEEMTALKGTILI 439 >gi|302346286|ref|YP_003814584.1| MiaB-like protein [Prevotella melaninogenica ATCC 25845] gi|302150387|gb|ADK96648.1| MiaB-like protein [Prevotella melaninogenica ATCC 25845] Length = 449 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 113/401 (28%), Positives = 191/401 (47%), Gaps = 18/401 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ ++ G + AD+ ++NTC + E A K + R+ Sbjct: 16 TLGCKLNFSETSTFARTLYNMGVREAKKTEQADICLINTCSVTEVADHKCRQIIHRM--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +++ V+V GC AQ E + + V++V+G L + L A + K Sbjct: 73 ----VRQNPGAFVIVTGCYAQLESATVAKIEG-VDLVLGSNEKADLVQYLSDA-WNKVDT 126 Query: 151 DTDYSVEDKFERLSIVD-----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + E ++ + D +R FL +Q+GC+ FCT+C +P+ RG + Sbjct: 127 AKEETSEGEYHSVKTKDIKSFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPFARGFSRNP 186 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ +V +A + G EI L G N+ + GK GE +F DL+ +L +++G+ R R Sbjct: 187 TIQSLVAQAEEAAREGGKEIVLTGVNIGDF-GK-TTGE--SFLDLVKALDKVEGIQRFRI 242 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ P + D LI + MP+ HLP+QSGSD +L+ M+RR+ + + I I+ Sbjct: 243 SSLEPDLIDDELIAYCAESRAFMPHFHLPLQSGSDEVLELMHRRYDTALFARKIKLIKEK 302 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD I D +VG GE + F + +D + Q F YS R GT ++ VD+ Sbjct: 303 MPDAFIGVDVMVGSRGERPEYFEDCYNFLDSLPVTQLHVFPYSERPGTAALSIPYVVDDR 362 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 K R L K E+ +F +GQ +VL EK + K Sbjct: 363 EKKHRAHKLLKLSDEKTRTFYAEHIGQEADVLFEKAARGKA 403 >gi|242075846|ref|XP_002447859.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor] gi|241939042|gb|EES12187.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor] Length = 623 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 121/451 (26%), Positives = 212/451 (47%), Gaps = 34/451 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q +VK++GC N DS M + GY + ADL ++NTC ++ + + + + Sbjct: 55 QTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLI 114 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +N +VVAGCV Q G + L+ ++++ G Q R+ E++E Sbjct: 115 SKCKNANKP---------LVVAGCVPQ--GSQGLKELEGISII-GVQQIDRVVEVVEETL 162 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G V + L +D RK L I GC CT+C + RG S Sbjct: 163 KGHEVRLLSR------KTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGS 216 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 ++ +VD + ++ GV EI L ++ A+ G+ + + + + + LR Sbjct: 217 YTIDSLVDRVKTVVSEGVREIWLSSEDTGAY-GRDISTNLPNLLNAIVAELPVDQSTMLR 275 Query: 265 YTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 ++P + + L + L + +LH+PVQSGSD +L +MNR +T E+R+++D + Sbjct: 276 IGMTNPPFILEHLKEIAAVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVAEFRKVVDTL 335 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + P + I++D I GFPGETD+DF T++LV + + Q ++ PR GTP + M + Sbjct: 336 YELVPGMQIATDIICGFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVP 395 Query: 383 DENVKAERLLCLQKKLREQQVSFN-----DACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 VK K+ RE F G++ + I + + LVG + Sbjct: 396 SNEVK--------KRSRELTSVFELFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQ 447 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V++ + + +G V+IT V +++GE++ Sbjct: 448 VLVIAPDSLLGTSANVKITSVGRWSVFGEVI 478 >gi|295084759|emb|CBK66282.1| MiaB-like tRNA modifying enzyme [Bacteroides xylanisolvens XB1A] Length = 439 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 124/448 (27%), Positives = 222/448 (49%), Gaps = 33/448 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 +K+ D VVV GC AQ + ++ + V+VV+G + L + L ++ G+ Sbjct: 73 ----VKQHPDAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + T + S D R R FL +Q+GCD FC++C +P+ RG + ++ Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++AR+ G EI L G N+ + GK GE +F DL+ +L +++G+ R R ++ Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVEGIERYRISS 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D +I+ MP+ H+P+QSG D +L+ M RR+ + + +I+ V P Sbjct: 237 IEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVKKIKEVMP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384 D I D IVG GET + F +D + Q F YS R GT ++ ++ Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDAC-VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + +++RLL L +Q+ AC +GQ + VL+EK K + G + V + S Sbjct: 357 HQRSQRLLALS----DQKTQAFYACHIGQTMPVLMEK-SKTGAPMHGFTENYIRVEVESD 411 Query: 444 NHNIGDIIKVRITDV--KISTLYGELVV 469 + ++ VR+ + +++ L G +++ Sbjct: 412 DSLDNQVVNVRLGEFNEEMTALKGTILI 439 >gi|190893801|ref|YP_001980343.1| methylase (RNA modification enzyme), MiaB family [Rhizobium etli CIAT 652] gi|190699080|gb|ACE93165.1| putative methylase protein (RNA modification enzyme), MiaB family [Rhizobium etli CIAT 652] Length = 423 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 119/400 (29%), Positives = 186/400 (46%), Gaps = 30/400 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M+ G + +V+NTC + +A + Sbjct: 6 VITFGCRLNTYESEVMKAQAEKAGLN--------NAVVVNTCAVTGEAVRQARQ------ 51 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142 ++ ++V GC AQ E ++ P V+ V+G + +Y LP+ Sbjct: 52 -AIRRARRDNPHARIIVTGCAAQTE-KQTFAAMPEVDAVLGNEEKLSSASYRSLPDFGVS 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A+ RV D + + +DG V AF+ +Q GCD CTFC++PY RG Sbjct: 110 AQEKLRVNDIMSVKATAPQMVRHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + VVD+AR+L D+G EI L G + ++ G L G L +I + R Sbjct: 164 RSVPMGAVVDQARRLADSGYREIVLTGVDATSY-GGDLPGAPTLGVLAKTLLKQIPDIRR 222 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ + L+ D MP+LHL +Q G D ILK M RRH + + I Sbjct: 223 LRLSSIDSIEADAHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHLRADALRFIAEA 282 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RP+++ +D I GFP ET++ F + L ++ G A F YS R GTP + M Q+ Sbjct: 283 RRLRPEMSFGADMIAGFPTETEEMFDNAVRLAEEAGIAHLHVFPYSARPGTPAARM-PQL 341 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 D ++ +R L+ S D VG +L+E +G Sbjct: 342 DRSLVKDRAARLRATGHRLHQSHLDGMVGTRQWLLVENNG 381 >gi|15604281|ref|NP_220797.1| hypothetical protein RP416 [Rickettsia prowazekii str. Madrid E] gi|6226371|sp|Q9ZDB6|Y416_RICPR RecName: Full=Putative methylthiotransferase RP416 gi|3860973|emb|CAA14873.1| unknown [Rickettsia prowazekii] gi|292572029|gb|ADE29944.1| MiaB-like tRNA modifying enzyme [Rickettsia prowazekii Rp22] Length = 421 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 114/397 (28%), Positives = 193/397 (48%), Gaps = 35/397 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N+Y+S + G + V + NTC + + A ++ + + + Sbjct: 16 TFGCRLNIYESEIIRKNLELSGLDNV--------AIFNTCAVTKSAEKQARQAIRKAK-- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT----YYRLPELLERARFG 146 K DL ++V GC AQA + S + V+ + YY++ + Sbjct: 66 -----KNNPDLKIIVTGCSAQANPKMYGNMSEVDKVIGNEEKLLSHYYQITD-------Q 113 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K V+ SV++ L G +R AF+ +Q GCD CTFC++PY RG S Sbjct: 114 KISVNDIMSVKETACHLVSSFDGKSR-----AFIQVQNGCDHNCTFCIIPYVRGKSRSIP 168 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRY 265 + +V + + L+ G E+ + G +V A+ G L G TF+ ++ L + L R+R Sbjct: 169 IGTIVAQVKHLVLKGFKEVVITGVDVTAY-GSDLPGSP-TFAQMIKRVLKLVPELKRMRL 226 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ ++ D L + + +MP+ H+ VQSG D ILK M RRH + ++R++ Sbjct: 227 SSIDIAEIDDELFELIAYSERIMPHFHISVQSGDDMILKRMKRRHNRASVIEFCQKLRAI 286 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RP+++ +D I GFP ET++ F T L+ + F YS R GTP + M QV +N Sbjct: 287 RPEVSFGADIIAGFPTETNEMFENTRKLILEAELQYLHVFPYSEREGTPAARM-PQVPQN 345 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 ++ ER L++ Q F +GQ +E+LIE + Sbjct: 346 IRKERAKILRQDGFNQLNEFFKRHIGQKVELLIENNN 382 >gi|109069747|ref|XP_001098819.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1 isoform 3 [Macaca mulatta] Length = 576 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 122/454 (26%), Positives = 215/454 (47%), Gaps = 35/454 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 64 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 120 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K +V+AGCV QA+ + + ++G Q R+ E++E Sbjct: 121 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 171 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V +D RL + +D RK + ++I GC CT+C + RG Sbjct: 172 KGHSVRLLGQK-KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 230 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257 S + ++VD A++ GVCEI L ++ A+ G+ + LL+ L E+ Sbjct: 231 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPTLLWKLVEVIPEGA 286 Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G+ Y H +M+ L + + +LH+PVQS SD +L M R + + Sbjct: 287 MLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMEMKREYCVAD 341 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +++++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ PR GTP Sbjct: 342 FKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 401 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 + M EQV VK +R L S + +G+ +VL+ + + V + + Sbjct: 402 AAKM-EQVPAQVKKQRTKDLSWVF--HSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRF 458 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V++ +G +++V I + + G+ V Sbjct: 459 YEQVLVPKNPAFMGKMVEVDICESGKHFMKGQPV 492 >gi|116254271|ref|YP_770109.1| methylase [Rhizobium leguminosarum bv. viciae 3841] gi|115258919|emb|CAK10028.1| putative methylase [Rhizobium leguminosarum bv. viciae 3841] Length = 424 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 123/403 (30%), Positives = 190/403 (47%), Gaps = 36/403 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR-EKAAEKVYSFLGRI 87 V ++GC++N Y+S M+ G + I++NTC + E + + Sbjct: 6 VITFGCRLNTYESEVMKAQAEKAGLN--------NAILVNTCAVTGEAVRQARQAIRRAR 57 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLE 141 R+ ++RI +VAGC AQ E + + V+ V+G + +Y LP+ Sbjct: 58 RDHPHARI--------IVAGCAAQTEKQTFAAMAE-VDAVLGNEEKLTSASYRSLPDFGV 108 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A RV D + + +DG V AF+ +Q GCD CTFC++PY RG Sbjct: 109 SAEEKLRVNDIMSVKATAPQMVRHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGN 162 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKG 259 S + VVD+A KL+D G EI L G + ++ G G LL L +I+ Sbjct: 163 SRSVPMGAVVDQASKLVDGGYREIVLTGVDATSYGGDLPGAPTLGLLAKTLLKQLPDIR- 221 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 RLR ++ + L+ D MP+LHL +Q G D ILK M RRH + + I Sbjct: 222 --RLRLSSIDSIEADAHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHLRADALRFI 279 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R +RP+++ +D I GFP ET++ F + L ++ G A F YSPR GTP + M Sbjct: 280 EDARRLRPEMSFGADMIAGFPTETEEMFENAVRLAEEAGIAHLHVFPYSPRPGTPAARM- 338 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 Q+D ++ +R L+ S D +G +L+E +G Sbjct: 339 PQLDRSLVKDRAARLRAAGHMLHQSHLDRMIGTRQWLLVENNG 381 >gi|161833745|ref|YP_001597941.1| putative MiaB-like protein [Candidatus Sulcia muelleri GWSS] gi|152206235|gb|ABS30545.1| putative MiaB-like protein [Candidatus Sulcia muelleri GWSS] Length = 429 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 107/359 (29%), Positives = 185/359 (51%), Gaps = 19/359 (5%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N ++ + + F +GYE V + ADL ++NTC + K AEK L RI Sbjct: 11 GCKLNFAETDTIINKFLKKGYEYVKFISYADLYIINTCSV-TKNAEKELKKLVRIA---- 65 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 I + +V GC +Q +EI + I ++++G + + + L++ + K+ + Sbjct: 66 --INNNVNAFIVAIGCYSQVNPKEISLINGI-DLIIGSKEKFNIINHLKKI-YKKKFL-- 119 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 S++DK +I Y+R ++L IQ+GCD C++C +P RG IS ++ ++ Sbjct: 120 --SLKDK----NIYIPSYSRLNRTRSYLKIQDGCDYKCSYCTIPKARGFSISDNIKNIIF 173 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV-RLRYTTSHPR 271 A+ +I G+ EI L G N+ + GK E + + +IK + R+R ++ P Sbjct: 174 YAKNIIKQGIKEIVLTGVNIGDY-GKHNLLELIQAMESSLNEDDIKNFIKRIRISSIEPN 232 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 +SD +I + + + H+P+QSGSD IL M RR++ Y + I +I ++ P I Sbjct: 233 LLSDDIINFIYKSKIFVNHFHIPLQSGSDEILNKMKRRYSKNLYLERIKKILNIMPFACI 292 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 SD IVGFPGE + +F T L+ +I + F YS R+ T M + + ++ +R Sbjct: 293 GSDVIVGFPGEKEKNFIETYSLLSEINISYLHVFSYSERINTKAFIMNNSITKKIRYKR 351 >gi|329960232|ref|ZP_08298674.1| tRNA methylthiotransferase YqeV [Bacteroides fluxus YIT 12057] gi|328532905|gb|EGF59682.1| tRNA methylthiotransferase YqeV [Bacteroides fluxus YIT 12057] Length = 439 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 119/430 (27%), Positives = 212/430 (49%), Gaps = 23/430 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K+ VVV GC AQ + + + + V+VV+G + L + L K Sbjct: 73 ----VKQHPGAFVVVTGCYAQLKPDTVAKIEG-VDVVLGAEQKKDLLQYL--GNLQKHGT 125 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y+ + + +R FL +Q+GCD +C++C +P+ RG + S++ + Sbjct: 126 GEAYT--SALKDIHSFAPSCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGSIASL 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++AR+ G EI L G N+ + GK GE TF DL+ +L E++G+ R R ++ P Sbjct: 184 VEQARQAAAEGGREIVLTGVNIGDF-GK-TTGE--TFFDLVKALDEVEGIERYRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 +++ +I+ MP+ H+P+QSGSD +LK M RR+ + + +I+ PD Sbjct: 240 NLLTEEIIEFVSRSKRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKVKKIKEAMPDSF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDENVK 387 I D IVG GET++ F + + + Q F YS R GT +++ +++V+ Sbjct: 300 IGVDVIVGTRGETEEYFEQAYEFIKGLDVTQLHVFSYSERPGTQALKIDHVVSPAEKHVR 359 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447 ++RLL L + E+ +F +GQ + VL+E+ K + G +P V + + Sbjct: 360 SQRLLELSE---EKTRAFYARHIGQAMPVLLER-SKPGTPMHGFTPNYIRVEVPHDDALD 415 Query: 448 GDIIKVRITD 457 ++ VR+ D Sbjct: 416 NQVVTVRLGD 425 >gi|118580731|ref|YP_901981.1| MiaB-like tRNA modifying protein [Pelobacter propionicus DSM 2379] gi|118503441|gb|ABK99923.1| MiaB-like tRNA modifying enzyme [Pelobacter propionicus DSM 2379] Length = 427 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 124/398 (31%), Positives = 192/398 (48%), Gaps = 36/398 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRI 87 + + GC+ N ++S M + F GY V + AD+ V+N+C + + AE Sbjct: 6 IATLGCKTNQFESAAMLEQFTRSGYRVVPFSEPADIYVINSCTVTARTDAETRRLIRRAR 65 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 R +RI V GC AQ +E L R P V+VV+G R + Sbjct: 66 RLNPAARI--------VATGCYAQVSPQE-LSRMPEVDVVLG-----------NREKLDS 105 Query: 148 RVVDTDYSVEDKFERLSIVDGGY-----NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 ++ TD S ED + GG + AFL +Q GCD FC++C+VPY RG Sbjct: 106 TLL-TDAS-EDMVKDAGQATGGALLHLTSFAEHTRAFLQVQNGCDSFCSYCIVPYARGRS 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---GEKCTFSDLLYSLSEIKG 259 S S ++V++ R+L+D+G E+ L G ++ A+ GLD GE + + L+ + E Sbjct: 164 RSVSPAEVLEGVRRLVDSGFREVVLTGIHLGAY---GLDLSPGE--SLACLVERILEETS 218 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L RLR + P + D LI + + H+P+QSG D +L M R + A R ++ Sbjct: 219 LERLRIGSLEPNEFDDRLISLFSRSPRVCHHFHIPLQSGCDSVLTLMGRPYDAAYLRSLL 278 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +R+ + PD + SD I GFPGE+D +F+ T LV+++ A F YS R GT +++ Sbjct: 279 ERVIAAMPDSFLGSDIIAGFPGESDREFQTTCTLVEQLPLADLHVFPYSLRPGTRAASLP 338 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417 + V +R L+ ++ F VG I VL Sbjct: 339 GHLPPAVIRDRAARLRNIAASKKELFLQRAVGGDILVL 376 >gi|71664178|ref|XP_819072.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener] gi|70884358|gb|EAN97221.1| tRNA modification enzyme, putative [Trypanosoma cruzi] Length = 530 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 124/453 (27%), Positives = 218/453 (48%), Gaps = 35/453 (7%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 F+ ++GC NV D M + GY + + AD+ +LN+C ++ + E S + R+ Sbjct: 52 FIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNGADVYLLNSCTVKNPSEEHFISMMNRV 111 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLERARFG 146 R G L VVAGCV QA+ R + +V V+G + R+ E++ A G Sbjct: 112 R-------ATGKPL--VVAGCVPQADP----RNTQWDDVSVIGVRNIDRVGEVIHEALQG 158 Query: 147 K--RVVDTDYSVEDKFE--RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R++ + +K + L +D R+ + I GC CT+C RG Sbjct: 159 HCVRLIGVNEHANNKQDPNELPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDL 218 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-V 261 S + +V R ++ GV EI + ++V A+ G+D S L + EI+G V Sbjct: 219 RSWPIESIVSRVRSVLKEGVKEIRITSEDVGAY---GIDINTDIVSLLRAIVKEIQGTEV 275 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLM------PYLHLPVQSGSDRILKSMNRRHTAYEY 315 +R S+P L++ D L+ ++H+P+QSGS+RIL +M R +T E+ Sbjct: 276 MMRVGMSNP----PYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEF 331 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + + RIRSV P++ +++D I FPGE + ++R TM+L D + + ++ PR TP Sbjct: 332 YECVHRIRSVVPNVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPA 391 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 ++M +Q+ +V R L + + D VG++ V + + +K LVG + Sbjct: 392 ASM-KQIPTDVAKRRTSELTEFFNSYRTL--DQMVGEVHSVALLETAHDKHHLVGHTKAY 448 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V+++ + +G+ + V I ++ G ++ Sbjct: 449 VQVLVDPQEARLGETVTVVIMSTTKYSVVGRVL 481 >gi|291238003|ref|XP_002738926.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like [Saccoglossus kowalevskii] Length = 544 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 131/458 (28%), Positives = 215/458 (46%), Gaps = 43/458 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q +VK++GC N DS M S GY+ + + ADL +LN+C ++ A + Sbjct: 50 QSVYVKTWGCSHNNSDSEYMAGQLASYGYKITETEEAADLWLLNSCTVKTPAEQ------ 103 Query: 85 GRIRNLKNSRIK-EGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTYYRLPELLE 141 + +NS IK + +V+AGCV QA+ + +N VVG Q R+ E++E Sbjct: 104 ----HFQNSIIKAREQNKYMVLAGCVPQAQP-----KLDYINGVSVVGVQQIDRIVEVVE 154 Query: 142 RARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G V + + K + ++ RK + + I GC CT+C Y RG Sbjct: 155 ETFKGHTVRLFGQKKKDGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNACTYCKTKYARG 214 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-- 258 S S++V A++ + GVCE+ L ++ A+ GK + T +LL+ L E+ Sbjct: 215 ELGSYQPSELVARAKQSFEEGVCELWLTSEDTGAY-GKDIG---VTIVELLWQLVEVIPD 270 Query: 259 ------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 G+ Y H ++S L + +LH+PVQSGSD +L M R + Sbjct: 271 GCMMRIGMTNPPYILEHLEEISKILKHPR-----VYSFLHVPVQSGSDSVLMDMKREYCV 325 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 +++ + + ++ P + I++D I GFP ETD+DF TM LV++ + F +Y PR G Sbjct: 326 DDFKHVCNFLKKRVPGVTIATDIICGFPTETDEDFDETMQLVEEYKFPSLFINQYFPRPG 385 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLRE--QQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 TP + M VK KKL + Q D VG+ VL+ + + V Sbjct: 386 TPSAKMTRVPTREVKKR-----TKKLSQLFQDYRPYDHKVGEEQHVLVTEDSHDGRFYVA 440 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + V++ + + +G +IKV+IT L G+++ Sbjct: 441 HNKFYDQVLVPKEENLLGKMIKVKITSTGKHYLIGDIL 478 >gi|295133112|ref|YP_003583788.1| radical SAM superfamily protein, UPF0004 [Zunongwangia profunda SM-A87] gi|294981127|gb|ADF51592.1| radical SAM superfamily protein, UPF0004 [Zunongwangia profunda SM-A87] Length = 449 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 132/457 (28%), Positives = 223/457 (48%), Gaps = 53/457 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC----HIREKAAEKVY 81 R V + GC NVYDS + + + V+ ++ +++V+NTC + +E++ + Sbjct: 10 RINVVTLGCSKNVYDSEVLMGQLKANNKDVVHE-EEGNIVVINTCGFIDNAKEQSVNTIL 68 Query: 82 SFLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 F+ + KE GD+ V V GC+++ ++ + P V+ G LP LL Sbjct: 69 EFVAK---------KEQGDVDKVFVTGCLSERYKPDLQKEIPNVDQYFGTT---ELPGLL 116 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + ++ DY E ERL+ Y A+L I EGCD+ C+FC +P RG Sbjct: 117 -------KALEADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRG 162 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKG 259 S + +V EA+KL NGV E+ L+ Q++ + GLD +K ++LL +L +++G Sbjct: 163 GHKSTPIENLVTEAKKLAANGVKELILIAQDLTYY---GLDLYKKRNLAELLENLVKVEG 219 Query: 260 L--VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + +RL Y T P D+ + + + + YL +P+Q SD +LKSM R T + Sbjct: 220 IEWIRLHYAFPTGFPMDVLEVMKREPK----ICNYLDIPLQHISDDLLKSMRRGTTHKKT 275 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 ++ + R P++AI + IVG+PGET+ F+ + V ++ + + F YS T Sbjct: 276 TDLLYKFRETVPEMAIRTTLIVGYPGETEAHFQELKEWVKEMRFERLGCFTYSHEENTHA 335 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR---- 431 N+ + V + VK ER + + + N +GQ +V+I++ KE +GR Sbjct: 336 YNLEDDVPDEVKQERANEIMEIQSQISWELNQQKIGQTFKVIIDR--KEGNYFIGRTEFD 393 Query: 432 SPWLQSVVLNSKNH---NIGDIIKVRITDVKISTLYG 465 SP + + VL G+ ++ITD LYG Sbjct: 394 SPDVDNEVLIDAAEIYLKTGEYYDIKITDAADFDLYG 430 >gi|332158106|ref|YP_004423385.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2] gi|331033569|gb|AEC51381.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2] Length = 429 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 129/447 (28%), Positives = 228/447 (51%), Gaps = 29/447 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGC N D M + G+E V +D+++++++N+C +++ K+ Sbjct: 7 KVYIENYGCARNRADGEIMAALLHLAGHEIVYDLDESEIVIVNSCAVKDPTERKIAR--- 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIR L + EG V+V GC+ E I R V+ V+G ++ R+ + +E A Sbjct: 64 RIREL----LDEGKK--VIVTGCLPHVNPEVIDER---VSAVLGVKSIDRIVQAVEYAIR 114 Query: 146 GKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++++ SV D +R L +D R V + I EGC CT+C + RG+ S Sbjct: 115 GEKLI----SVPDWRKRNLDKLDLPRLSLRTVYFIVPIAEGCLNACTYCATRFARGVLKS 170 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 S ++V+ + I G EI L ++ + G D + LL ++ I+G R+R Sbjct: 171 YSPEKIVEWVKWAIKQGYKEIWLSAEDTGCY---GFDI-GTNLAKLLDEITAIEGEFRIR 226 Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +P + D LI+A+ D D + +LHLPVQSG + IL+ M R +T E+ +I++ Sbjct: 227 VGMMNPNHVIKFLDELIEAYQD-DKVYKFLHLPVQSGDNEILRRMGRNYTVEEFEEIVNA 285 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R PD+ + +D IVGFPGE+++ F+ +++L+ +I + +YSPR GT + +Q Sbjct: 286 FRKKFPDLNLHTDIIVGFPGESEEAFQKSVELIKRIKPDKVNVSRYSPRPGTIAAKW-KQ 344 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + + ER L + + N +G+ +EVLI GK KG + + + ++L Sbjct: 345 LPGWLIKERSRLLHRLRLQISYEINQKYIGRKMEVLIHGEGK-KGNVDAVTMNYKHIILP 403 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 ++ KV+ + + L GE+V Sbjct: 404 KGEKGKFEVAKVK--NATSTYLLGEIV 428 >gi|326802526|ref|YP_004320345.1| ribosomal protein S12 methylthiotransferase rimO [Sphingobacterium sp. 21] gi|326553290|gb|ADZ81675.1| Ribosomal protein S12 methylthiotransferase rimO [Sphingobacterium sp. 21] Length = 442 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 128/451 (28%), Positives = 219/451 (48%), Gaps = 37/451 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEKVYS 82 R V + GC N++DS + E V N++ D++V+NTC + A ++ Sbjct: 14 RVNVITLGCSKNIHDSEVLMGQLRGNQMEVVHEANNISKNDIVVINTCGFIDNAKQESID 73 Query: 83 FLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L+ S +KE G L V+V GC+++ E+ P V+ G L +LL Sbjct: 74 TI-----LQYSALKEEGKLEKVIVTGCLSERYKPELETEIPNVDAYFGTND---LQQLLA 125 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 V DY E ER+ Y A+ I EGC++ C+FC +P RG Sbjct: 126 S-------VGADYKHELLGERMLTTPSHY-------AYFKIAEGCNRPCSFCAIPLMRGK 171 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 IS+ + +V EA+ L NG E+ L+ Q++ + G L G++ +DLL +LS+++G+ Sbjct: 172 HISKPIEDLVSEAKHLAKNGTKELILIAQDL-TYYGLDLYGKR-NLADLLRNLSDVEGIE 229 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R ++P ++ + + YL +P+Q +D +LKSM R T + +++ Sbjct: 230 WIRLQYAYPSGFPMDVLDVMNERQNICNYLDMPLQHIADNMLKSMRRGITKQKTIDLVNA 289 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR P+IA+ + I G+PGET+ DF M+ V++ + + F YS T ++++ Sbjct: 290 IRDKVPNIALRTTLICGYPGETEQDFAEMMEWVERTRFDRLGCFTYSHEEKTHAFSLVDD 349 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437 V + K R+ + + + N VG +VLI++ E+G +GR SP + + Sbjct: 350 VPQEEKESRVEQIMEIQQGISYEINQEKVGNTYKVLIDR--VEEGYFIGRTEYDSPEVDN 407 Query: 438 VVLNSKNHN---IGDIIKVRITDVKISTLYG 465 VL + N+N +G + V I + LYG Sbjct: 408 EVLIAANNNYAAVGRFVDVHIDRAEDFDLYG 438 >gi|11498846|ref|NP_070075.1| hypothetical protein AF1247 [Archaeoglobus fulgidus DSM 4304] gi|2649334|gb|AAB89997.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 405 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 124/425 (29%), Positives = 219/425 (51%), Gaps = 30/425 (7%) Query: 48 FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107 F S +E ++S++DA+++++N+C + + K+ + R+ +LK +EG VV+AG Sbjct: 4 FLSGEFE-LSSVEDAEVVIINSCGVIDFTERKI---IRRMLDLK----REGKK--VVLAG 53 Query: 108 CVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVD 167 C+ + E + + + + P + + + A G+++ T+ DK E + Sbjct: 54 CLTRISKEAL----SVADSALSPDNLDMVVDAVYSALNGRKLF-TERRFIDKAEFSHL-- 106 Query: 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227 + A ++I EGC C+FC + RG S S+ +V EA + + G EI L Sbjct: 107 -KCRLRENAIAIVSISEGCLGKCSFCATKFARGRLRSFSMDAIVREAERAVRAGYREIQL 165 Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCLIKAHGDL 284 Q+ A+ G+D + +LL +SEI+G R+R +P+ M D LI A+ Sbjct: 166 TSQDTGAY---GMDKGRAMLPELLRKISEIEGEFRVRVGMMNPQHAVRMLDELINAYSS- 221 Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344 + + +LH+PVQSG +RIL+ M R HT +Y ++++ R+ D+ IS+D IVGFP ET+ Sbjct: 222 EKIYKFLHIPVQSGDNRILEDMKRNHTVEDYVEVVEAFRNSFDDVLISTDIIVGFPTETE 281 Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404 + F + +L+ + +YS R GTP + L + +K ER L +R+ + Sbjct: 282 EAFWKSYELIKETRPDIVNITRYSARKGTPAAR-LRDIPGWIKKERSRKLTDLMRKIGLE 340 Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464 N VG+ + VL+ K GK G+ + R ++VV +G+ ++V+I D + + L Sbjct: 341 NNKRFVGKKLRVLVTKEGK-NGRNLARMNSYRAVVTEGA---VGEFVEVKIKDCRFNYLI 396 Query: 465 GELVV 469 G+L Sbjct: 397 GQLAA 401 >gi|167769111|ref|ZP_02441164.1| hypothetical protein ANACOL_00434 [Anaerotruncus colihominis DSM 17241] gi|167668751|gb|EDS12881.1| hypothetical protein ANACOL_00434 [Anaerotruncus colihominis DSM 17241] Length = 441 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 126/443 (28%), Positives = 215/443 (48%), Gaps = 21/443 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D+ R+ GYE D++++NTC E A + + L Sbjct: 9 SLGCSKNQVDAERLLAQIEKGGYEICTDASQCDVVIINTCGFIEDAKRESIETI-----L 63 Query: 91 KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + +++K GG L +VV GC+A+ E++ P +VV+G + +ERA G++ Sbjct: 64 EFAQLKTGGALRALVVTGCLAERYREQVAAEIPEADVVLGIGCNADILGAIERALHGEKT 123 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 V + +K E LS+ A+L + EGCD C++C +P RG SR + Sbjct: 124 V----AFGEK-EALSLEGERVLANEPYFAYLKVAEGCDNRCSYCAIPLIRGPFRSRPMEN 178 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 +V EA++L GV E+ ++ Q+ + G+ L G + +LL L + G+ +R + Sbjct: 179 IVAEAQRLAACGVTELNVVAQDTTRY-GEDLYG-RLALPELLEKLCRLDGVRWVRMLYCY 236 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P ++D L+ + ++ Y+ +P+Q + RIL MNRR A ++++IR+ P + Sbjct: 237 PDRITDRLLDVMAREEKIVKYMDIPIQHVNGRILSLMNRRGDAGSLTALMEKIRARVPGV 296 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 + + I GFP ET +F + V ++ + + F YS TP + M Q+DE K Sbjct: 297 VLRTTLITGFPTETQGEFEELCEFVQRVRFERLGCFAYSAEEDTPAALMDGQLDEEEKRR 356 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKN- 444 R + ++ FN + +G+ + V +E G+E GRS P + S V S + Sbjct: 357 RAQIIMEQQYGVMEGFNRSQIGRRLTVAVE--GREGRLWYGRSYMDAPDIDSRVYFSGHG 414 Query: 445 -HNIGDIIKVRITDVKISTLYGE 466 ++ GD I+V I V+ L G+ Sbjct: 415 PYSPGDYIEVEIDGVEGYDLKGK 437 >gi|110635718|ref|YP_675926.1| MiaB-like tRNA modifying enzyme [Mesorhizobium sp. BNC1] gi|110286702|gb|ABG64761.1| MiaB-like tRNA modifying enzyme [Chelativorans sp. BNC1] Length = 426 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 126/434 (29%), Positives = 203/434 (46%), Gaps = 34/434 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S + + G S + +++NTC + +A + Sbjct: 5 VLTFGCRLNAYESEVIRREAEAAGL----SALEGGAVIVNTCAVTAEAVRQARQ------ 54 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLER 142 +E D ++V GC AQ E V++V+G +Y LP+ Sbjct: 55 -AIRRARRENPDARIIVTGCAAQTE-PGTFGSMEEVDLVLGNEEKLKAHSYRALPDFGVN 112 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +F K V+ V + + VD R R AF+ +Q GCD CTFC++PY RG Sbjct: 113 -QFEKVRVNDIMEVRETASHM--VDAIEGRAR---AFVQVQNGCDHRCTFCIIPYGRGNS 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + VVD+ R+L++NG E+ L G ++ ++ G L G + L+++ L R Sbjct: 167 RSVPMGAVVDQVRRLVENGYAEVVLTGVDLTSF-GADLPGSPRLGKLVRTILAQVPDLKR 225 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ + L++A + LMP+LHL +Q+G D ILK M RRH + + D + Sbjct: 226 LRLSSIDSIEADQDLMRALAEEARLMPHLHLSLQAGDDMILKRMKRRHLRADSIRFCDEV 285 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +R DI +D I GFP ET+ F ++ +V++ G F +SPR GTP S M Q+ Sbjct: 286 RRLRTDIVFGADIIAGFPTETEAMFENSLRIVEECGLTHLHVFPFSPRKGTPASRM-PQL 344 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 N ER L+ + G VL+E+ G +GR+ V + Sbjct: 345 PRNTVKERAARLRAAGDAAYARHLASLEGTRQRVLVEREG------LGRTEGFTLVAV-- 396 Query: 443 KNHNIGDIIKVRIT 456 + G+I++ IT Sbjct: 397 EGGKPGEIVESLIT 410 >gi|83720372|ref|YP_442780.1| ribosomal protein S12 methylthiotransferase [Burkholderia thailandensis E264] gi|257138990|ref|ZP_05587252.1| putative tRNA modifying protein [Burkholderia thailandensis E264] gi|123753779|sp|Q2SWB9|RIMO_BURTA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|83654197|gb|ABC38260.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia thailandensis E264] Length = 463 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 128/465 (27%), Positives = 213/465 (45%), Gaps = 50/465 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ +G Sbjct: 21 SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77 Query: 91 KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146 + E G V+V GC+ A G ++ P V V GP + +++ + Sbjct: 78 ----LAENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQVV-HSHLP 130 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K D F L + G A+L I EGC+ C+FC++P RG +SR Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSRP 181 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 +++V+ EA L GV E+ ++ Q+ +A W G+ L K ++L+ +L Sbjct: 182 VAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 238 Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRH 310 E+ VRL Y +P + A G L ++PYL +P Q +LK M R Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHAHPDVLKRMKRPA 298 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 A + + + R R + PD+ I S FI GFPGET+ F +D + + + F YSP Sbjct: 299 NAEKVLERVQRWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAELDRVGCFAYSPV 358 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 G + + + ++V+ R + E + + VG+ ++VLI++ +E G+ Sbjct: 359 EGASANELDGALPDDVREARRARFMEVAEEVSAARIERKVGKTLKVLIDEVNEEGGIGRT 418 Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 +P + VV SK + +GD + V+IT L+GE+ Sbjct: 419 AADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 463 >gi|282163181|ref|YP_003355566.1| putative 2-methylthioadenine synthetase [Methanocella paludicola SANAE] gi|282155495|dbj|BAI60583.1| putative 2-methylthioadenine synthetase [Methanocella paludicola SANAE] Length = 406 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 133/451 (29%), Positives = 212/451 (47%), Gaps = 56/451 (12%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + +++++GC N DS + + + G E V + ++AD +V+NTC + E ++ S L Sbjct: 2 KIYIETHGCTANASDSQAIRNSVLASGGEVVGTPEEADTVVVNTCAVTEFTSK---SMLK 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I+ R VVVAGC+A A+ P LL+ R Sbjct: 59 AIKKYSGKR--------VVVAGCMAAAQ-----------------------PYLLKGIRN 87 Query: 146 GKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + E L I+ G +G +A ++I EGC C++C+V RG S Sbjct: 88 IQ--IAEAPGAEAVARMLGIMPAAGRPFIKGTSAVVSIAEGCRGHCSYCIVRLVRGPLRS 145 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263 + +VV + + G EI L Q+ A+ GLD GE+ L+ + I+G R+ Sbjct: 146 APVEEVVHSIKTALRMGAREILLTAQDTGAY---GLDAGER--LPALMKEILSIEGDYRI 200 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLM--P----YLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 R +P ++D L GD+ + P + H+PVQSGSDRIL M R +T +YR Sbjct: 201 RLGMMNPFSIADIL----GDMARIFNDPRVYRFAHIPVQSGSDRILGLMERPYTESQYRD 256 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 I+ R+R P I +S+D+IVGFP ETD+DF TMD + + ++SPR GTP + Sbjct: 257 IVARLRQEVPGITLSTDYIVGFPTETDEDFALTMDDLRSTRPLKVNITRFSPRPGTPAAC 316 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 M E + +K ER L + + G+ + VL+ + GK G V R Sbjct: 317 M-ENLPFRIKKERSRALTQLHHGITSEYMRDSAGRRLSVLVTEEGK-PGTSVARDDCYHM 374 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV+ + + G + V+I + + G+ + Sbjct: 375 VVI-PEEISPGTRLDVKICGASTTYMVGKPI 404 >gi|323700753|ref|ZP_08112665.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. ND132] gi|323460685|gb|EGB16550.1| RNA modification enzyme, MiaB family [Desulfovibrio desulfuricans ND132] Length = 449 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 118/393 (30%), Positives = 187/393 (47%), Gaps = 28/393 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + GC++N Y++ + + + + V+ ADLI++N+C + A V Sbjct: 4 FHTATLGCKINQYETRSIAEAWTGRSAVEVDDPRAADLILVNSCAV---TANAVADLRQA 60 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R + G ++V GC AQ EE+ + +V VV L Sbjct: 61 VRRFHRDNPEAG----IIVTGCAAQVMPEELAQLPGVVRVVSQADKARLLDGPGLDGPGL 116 Query: 147 KRV---VDTDYSVEDK-----FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + + D +V DK F SI GY R R V + +Q+GC FCT+C+VP T Sbjct: 117 GSLEASPNLDGNVPDKAEGVRFAPFSIT--GYGRARAV---VKVQDGCSHFCTYCIVPLT 171 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL---- 254 RG +SR ++V E +L+ G E L G N+ + G+ L G K F DL+ L Sbjct: 172 RGRSVSRDPAEVEGEVARLLGAGFREFILSGINLRHF-GRDLPG-KPDFWDLVARLETNF 229 Query: 255 -SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 E G RLR ++ P ++D + G ++ P LHL +QSG +LK+M R H + Sbjct: 230 APEWTGRARLRISSVEPGQLTDKALDVLGASRLVCPQLHLSLQSGDPDVLKAMGRGHYSP 289 Query: 314 EYR-QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + +DR+++ P + + +D I GFPGET++ F T+DL + F YS R G Sbjct: 290 QSAVDFMDRLKAFWPVMGLGADLITGFPGETEERFEHTLDLCRALPLTYGHVFPYSERPG 349 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405 T ++ VD V+ ER L+K + ++ +F Sbjct: 350 TRAVDLPGAVDVPVRKERAARLRKLVGRKKAAF 382 >gi|149045301|gb|EDL98387.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted), isoform CRA_d [Rattus norvegicus] Length = 520 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 125/457 (27%), Positives = 217/457 (47%), Gaps = 41/457 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 63 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 119 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ K VV+AGCV QA+ + + ++G Q R+ E++E Sbjct: 120 NSIKKAHEENKK------VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V E +RL + +D RK + ++I GC CT+C + RG Sbjct: 171 KGHSVRLLGQKKESG-KRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257 S + ++V+ A++ GVCEI L ++ A+ R G D LL+ L E+ Sbjct: 230 ASYPIDELVERAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 284 Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 G+ Y H +M+ L + + +LH+PVQS SD +L M R + Sbjct: 285 AMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMDMKREYCVA 339 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 ++++++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ PR GT Sbjct: 340 DFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGT 399 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGR 431 P + +QV +VK +R L + S+N D +G+ +VL+ + + V Sbjct: 400 PAAKA-KQVPAHVKKQRTKDLSRVFH----SYNPYDHKIGERQQVLVTEESFDSKFYVAH 454 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + + V++ +G +++V I + L G+ V Sbjct: 455 NRFYEQVLVPKNPAFMGKMVEVDIYESGKHFLKGQPV 491 >gi|260574290|ref|ZP_05842295.1| MiaB-like tRNA modifying enzyme [Rhodobacter sp. SW2] gi|259023756|gb|EEW27047.1| MiaB-like tRNA modifying enzyme [Rhodobacter sp. SW2] Length = 416 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 116/356 (32%), Positives = 174/356 (48%), Gaps = 34/356 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ S G + +V+NTC + +A K IR L Sbjct: 8 TLGCRLNAYETEAMKELAASAGVQ--------GAVVVNTCAVTAEAVRKAKQ---EIRRL 56 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLERA 143 +E ++V GC AQ E P V VVG T+ L P+L+ Sbjct: 57 A----RENPGAAIIVTGCAAQTE-PATFAAMPEVTRVVGNAEKMQASTWAGLAPDLIG-- 109 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +RV VD SV + L +DG + R R A+ +Q GCD CTFC++PY RG Sbjct: 110 -ITERVQVDDIMSVRETAGHL--IDG-FGRHR---AYFQVQNGCDHRCTFCIIPYGRGNS 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S VV++ ++L+D G E+ L G ++ +W G L G +L L + L R Sbjct: 163 RSVPAGVVVEQIKRLVDKGFQEVVLTGVDLTSW-GADLPGTPALGDLVLRILRLVPDLPR 221 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ L+ A LMP+LHL +Q+G D ILK M RRH + + + Sbjct: 222 LRISSIDSIEVDGALMDAIAGEQRLMPHLHLSLQAGDDLILKRMKRRHLRDDAIRFCNEA 281 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 R +RPD+ +D I GFP ET+ F+ ++DLV G F +S R GTP + M Sbjct: 282 RRLRPDMVFGADIIAGFPTETEAMFQRSLDLVADCGLTFLHVFPFSARKGTPAARM 337 >gi|238018965|ref|ZP_04599391.1| hypothetical protein VEIDISOL_00825 [Veillonella dispar ATCC 17748] gi|237864449|gb|EEP65739.1| hypothetical protein VEIDISOL_00825 [Veillonella dispar ATCC 17748] Length = 453 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 111/375 (29%), Positives = 189/375 (50%), Gaps = 14/375 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89 S GC N+ D+ M + GY + +ADLIV+NTC EKA AE + + L + Sbjct: 14 SLGCAKNLVDTEVMLGLLKDNGYTITEDLSEADLIVVNTCTFIEKAKAESINTILEVAQY 73 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 ++ + K ++VAGC++Q +E+ + P ++ ++G + ++ ++ G R Sbjct: 74 KEDGKCKG-----LIVAGCLSQQYQDELFQEIPEIDALIGTGAWDQIMVAVDAIEHGNRS 128 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + ER+ + +A++ I EGC+ CTFC++P RG SR++ Sbjct: 129 CIMENITNIYDERMPRI----QTTPRYSAYVKIAEGCNNGCTFCIIPKVRGAFRSRTIES 184 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 + E +L +GV E+ L+ Q+ ++ G L+ K + LL L+ ++G+ +R + Sbjct: 185 IKAEVERLAASGVKEVVLIAQDTTSY-GIDLNDGKPLLTTLLKELTAVEGIEWIRMLYLY 243 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P SD L+ + L Y+ +P+Q ++ ILK MNRR + +++ +IR+ I Sbjct: 244 PTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDDRNDIERLLKKIRNAPTHI 303 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 + + IVGFPGETD+ F D V +I + F YS GTP +QV E VK E Sbjct: 304 TLRTSIIVGFPGETDEQFEELCDFVKEIKFDNMGVFTYSQEEGTPAGAREDQVPEEVKEE 363 Query: 390 R---LLCLQKKLREQ 401 R L+ +Q + E+ Sbjct: 364 RYHVLMSIQAAISEE 378 >gi|167619848|ref|ZP_02388479.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia thailandensis Bt4] Length = 463 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 128/465 (27%), Positives = 213/465 (45%), Gaps = 50/465 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ +G Sbjct: 21 SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77 Query: 91 KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146 + E G V+V GC+ A G ++ P V V GP + +++ + Sbjct: 78 ----LAENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQVV-HSHLP 130 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K D F L + G A+L I EGC+ C+FC++P RG +SR Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSRP 181 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 +++V+ EA L GV E+ ++ Q+ +A W G+ L K ++L+ +L Sbjct: 182 VAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 238 Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRH 310 E+ VRL Y +P + A G L ++PYL +P Q +LK M R Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHAHPDVLKRMKRPA 298 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 A + + + R R + PD+ I S FI GFPGET+ F +D + + + F YSP Sbjct: 299 NAEKVLERVQRWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAELDRVGCFAYSPV 358 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 G + + + ++V+ R + E + + VG+ ++VLI++ +E G+ Sbjct: 359 EGASANELDGALPDDVREARRARFMEVAEEVSAARIERKVGKTLKVLIDEVNEEGGIGRT 418 Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 +P + VV SK + +GD + V+IT L+GE+ Sbjct: 419 AADAPEIDGVVYVEPAAKASKRYKVGDFVSVKITGADGHDLWGEV 463 >gi|156382226|ref|XP_001632455.1| predicted protein [Nematostella vectensis] gi|156219511|gb|EDO40392.1| predicted protein [Nematostella vectensis] Length = 555 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 133/475 (28%), Positives = 218/475 (45%), Gaps = 60/475 (12%) Query: 18 VDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 V I+P Q +V+++GC N DS M + GY+ + ADL +LN+C ++ Sbjct: 53 VGDSIIPGTQTIYVRTWGCSHNNSDSEYMAGQLAAYGYKITDDEQCADLWLLNSCTVKSP 112 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYY 134 A + F I+ K +G L VVAGCV Q + R + + VVG Q Sbjct: 113 AED---GFRNAIKKAK----AQGKHL--VVAGCVPQGQP----RHDTVKGISVVGVQQID 159 Query: 135 RLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187 R+ E++E FG++ D + + I RK + + I GC Sbjct: 160 RVVEVVEETLKGHTVRLFGQKKADGKKTGGASLDLPKI------RKNPLVEIIAINTGCL 213 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF 247 CT+C + RG S ++V+ A++ + GV E+ L ++ A+ GK + T Sbjct: 214 NQCTYCKTKHARGDLGSYPPEEIVNRAKQAFNEGVVEMWLTSEDTGAY-GKDIG---VTL 269 Query: 248 SDLLYSLSEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 +LL+ L ++ G+ Y H +M+ L + + +LH+PVQS S Sbjct: 270 PELLWQLVKVIPEGGRMRIGMTNPPYILEHLEEMAKIL-----NHPRVYSFLHVPVQSAS 324 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L M R + A ++ +++ +R PD+ I++D I GFP ET+DDF+ T+DLV K + Sbjct: 325 TNVLADMKREYIAEDFEHVVNYLRQRVPDLTIATDLICGFPTETEDDFQKTLDLVKKYKF 384 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE-----QQVSFNDACVGQII 414 F ++ PR GTP + M E VK ++ RE Q + D VG + Sbjct: 385 PSLFINQFYPRPGTPAARMKRLPTEEVK--------RRTREVSKLFQSYTTYDHKVGAVQ 436 Query: 415 EVLIEKHGKEKGKLVGRS-PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 EVL+ + + VG + + Q +V + +G I+KV +T L G ++ Sbjct: 437 EVLVTEESHDGVHYVGHNKAYDQVLVKKDEGELMGKIVKVEMTSSGKHYLMGRVM 491 >gi|298479874|ref|ZP_06998074.1| 2-methylthioadenine synthetase [Bacteroides sp. D22] gi|298274264|gb|EFI15825.1| 2-methylthioadenine synthetase [Bacteroides sp. D22] Length = 439 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 122/447 (27%), Positives = 221/447 (49%), Gaps = 31/447 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 +K+ D VVV GC AQ + ++ + V+VV+G + L + L ++ G+ Sbjct: 73 ----VKQHPDAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + T + S D R R FL +Q+GCD FC++C +P+ RG + ++ Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++AR+ G EI L G N+ + GK GE +F DL+ +L +++G+ R R ++ Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVEGIERYRISS 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D +I+ MP+ H+P+QSG D +L+ M RR+ + + +I+ V P Sbjct: 237 IEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVKKIKEVMP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384 D I D IVG GET + F +D + Q F YS R GT ++ ++ Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + +++RLL L ++ +F +GQ + VL+EK K + G + V + S + Sbjct: 357 HQRSQRLLALSD---QKTQAFYARHIGQTMPVLMEK-SKAGAPMHGFTENYIRVEVESDD 412 Query: 445 HNIGDIIKVRITDV--KISTLYGELVV 469 ++ VR+ + +++ L G +++ Sbjct: 413 SLDNQVVNVRLGEFNEEMAALKGTILI 439 >gi|332141284|ref|YP_004427022.1| MiaB-like tRNA modifying enzyme YliG [Alteromonas macleodii str. 'Deep ecotype'] gi|238065285|sp|B4RYE6|RIMO_ALTMD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|327551306|gb|AEA98024.1| MiaB-like tRNA modifying enzyme YliG [Alteromonas macleodii str. 'Deep ecotype'] Length = 485 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 128/413 (30%), Positives = 198/413 (47%), Gaps = 38/413 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY+ V + +DADL+++NTC + A E+ +G Sbjct: 43 SLGCPKNLVDSERILTQLRTEGYDVVPTYNDADLVIVNTCGFIDAAVEESLDTIGEA--- 99 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ E +EI P V + GP Y + E + + Sbjct: 100 ----LKENGK--VIVTGCLGVKE-DEIRELHPNVLAITGPHAYETVVEQVHEHLPKPQ-- 150 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + F L I D G A+L I EGC+ CTFC++P RG +SR + V Sbjct: 151 ------HNPFADL-IPDHGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGNV 203 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 +DEA++L + GV E+ ++ Q+ +A W G + K L L E+ Sbjct: 204 LDEAKRLKEAGVKELLVISQDTSAYGVDVKHRTGFWNGMPV---KTHMQQLCEQLGEMGI 260 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P D LI D +L PYL +P Q + RIL+ M R +A + + Sbjct: 261 WVRLHYVYPYPH--VDDLIPLMNDGKIL-PYLDIPFQHANKRILRLMKRPGSAERVLERV 317 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R P + I S FIVGFPGET+++F +D + + + +F YSP G +++ Sbjct: 318 KKWREQCPSLVIRSTFIVGFPGETEEEFEELLDFLREAQLDRVGAFAYSPVEGARANDLP 377 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 + V E++K ERL + E + A +G +V+I+ E VGR+ Sbjct: 378 DPVPEDIKQERLARFMEVQGEISAARLKARIGNEYQVVIDSVDAEGA--VGRT 428 >gi|266621755|ref|ZP_06114690.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium hathewayi DSM 13479] gi|288866581|gb|EFC98879.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium hathewayi DSM 13479] Length = 320 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 94/278 (33%), Positives = 156/278 (56%), Gaps = 10/278 (3%) Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 D S ++E L+I + AF+ + +GC++FC++C++PYTRG SR + V Sbjct: 7 DISAAKEYEALTI----HKIADHTRAFIKVTDGCNQFCSYCIIPYTRGRVRSRRMEDVRA 62 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 E +L+ G EI L G +++++ + E+ T DL+ L E+ GL+R+R + PR Sbjct: 63 EVERLVAGGYKEIVLTGIHLSSYGVDFREEERRTLLDLIVYLHEVDGLLRIRLGSLEPRI 122 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 ++ +A L + P+ HL +QSG D L MNR +T +Y + D +R+ + AI+ Sbjct: 123 ITKEFAEALAALPKVCPHFHLSLQSGCDATLARMNRHYTTADYLERCDILRAAFDNPAIT 182 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER-- 390 +D IVGFPGET ++F+ T + + + + FKYS R GT + M +QV E VK ER Sbjct: 183 TDVIVGFPGETGEEFQTTEAFLRTVHFYEMHVFKYSRREGTRAAVMPDQVPEPVKTERSG 242 Query: 391 -LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 LL L+K + + + +G++ EVL+E+ + G+ Sbjct: 243 VLLSLEKIM---SLEYRKQFLGKMTEVLMEEEFEWDGR 277 >gi|194334590|ref|YP_002016450.1| RNA modification enzyme, MiaB family [Prosthecochloris aestuarii DSM 271] gi|194312408|gb|ACF46803.1| RNA modification enzyme, MiaB family [Prosthecochloris aestuarii DSM 271] Length = 452 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 125/405 (30%), Positives = 202/405 (49%), Gaps = 32/405 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F + GC++N ++ + + F G+ + + D++V++TC + +A +K + R Sbjct: 11 IFAVTLGCKLNYAETSSILERFVKCGWRIASKDEQPDVVVVHTCAVTGQAEQKSRQQIRR 70 Query: 87 -IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 IR SRI VV GC AQ E I V+V++G + + + + Sbjct: 71 MIRTYPASRI--------VVIGCYAQLSPERI-ENIEGVDVILGSKGKFDIEKYCAAEET 121 Query: 146 GKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEI 203 G + V S+ S+++ R+ G + AFL IQ+GCD C +C +P RG + Sbjct: 122 GVFIDVAPVASIASPVPAHSLIE---KREMGRSRAFLKIQDGCDYGCGYCAIPLARGRSL 178 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S V+D AR L G CEI L G N+ A+R LD F+ LL L ++ + R+ Sbjct: 179 SIDPDVVLDGARALAGAGYCEIVLTGVNIAAYRFGELD-----FAGLLRLLDQVD-VQRI 232 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI- 322 R ++ P ++D LI +MP+ HLP+Q GSD +L+SM RR+T YR DR+ Sbjct: 233 RVSSIEPDCLTDELIDVVASSQRIMPHFHLPLQGGSDVVLRSMARRYTTAYYR---DRLF 289 Query: 323 RSVR--PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-----G 375 R+VR A+ +D + G+PGET +DF++ D + + A F S R GT Sbjct: 290 RAVRRISGCAVGADVMTGYPGETGEDFQSAYDFIASLPLAYLHIFTCSIRPGTALARQVQ 349 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 S + + V ++ R L++ ++ F +CVG+ + VLIE+ Sbjct: 350 SGLRQPVAHDIVRHRSRLLRELGERKKREFLASCVGREVNVLIEE 394 >gi|189463972|ref|ZP_03012757.1| hypothetical protein BACINT_00307 [Bacteroides intestinalis DSM 17393] gi|189438545|gb|EDV07530.1| hypothetical protein BACINT_00307 [Bacteroides intestinalis DSM 17393] Length = 439 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 114/393 (29%), Positives = 200/393 (50%), Gaps = 22/393 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K+ VVV GC AQ + E + + V+VV+G + L + L + + Sbjct: 73 ----VKQHPGAFVVVTGCYAQLKPETVAKIEG-VDVVLGAEQKKDLLQYLGNLQKNESGE 127 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +++D G +R R FL +Q+GCD +C++C +P+ RG + +++ + Sbjct: 128 AYASALKDIHSFAPSCSRG-DRTR---YFLKVQDGCDYYCSYCTIPFARGRSRNGTVASM 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++AR+ G EI L G N+ + GK GE TF DL+ +L E++G+ R R ++ P Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDEVEGIERYRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I+ MP+ H+P+QSGSD +LK M RR+ + + R++ + PD Sbjct: 240 NLLTDEIIEFVSHSRSFMPHFHIPLQSGSDDVLKLMRRRYDTELFASKVQRVKEMMPDAF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDENVK 387 I D IVG GETD+ F + + + Q F YS R GT +++ +++ + Sbjct: 300 IGVDVIVGTRGETDEYFEQAYEFIKSLDVTQLHVFSYSERPGTQALKIDHVVTPEEKHRR 359 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 ++RLL L E+ +F +GQ + VL+E+ Sbjct: 360 SQRLLELSD---EKTHAFYARYIGQTMPVLLER 389 >gi|153871438|ref|ZP_02000608.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Beggiatoa sp. PS] gi|152072092|gb|EDN69388.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Beggiatoa sp. PS] Length = 190 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 82/182 (45%), Positives = 120/182 (65%), Gaps = 1/182 (0%) Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 L+ +LHLPVQSGSDRIL M R HT EY+Q + R+R VRPDI++SSDFI+GFPGET+ D Sbjct: 4 LVSHLHLPVQSGSDRILSLMKRGHTILEYKQKVRRLREVRPDISLSSDFIIGFPGETEAD 63 Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406 F+ATM L++++ + +FSF YSPR GT M QV +K +RL LQ +L E + + Sbjct: 64 FQATMQLIEELRFDHSFSFMYSPRPGTAAVTMPNQVPLEIKKQRLAQLQARLTEIAQTIS 123 Query: 407 DACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 + +G + +L+E K +L GR+ + V +++ IG +++VRIT+ ++L G Sbjct: 124 HSMLGTVQRILVEHPSRKNPNQLAGRTENNRVVNFTAEHSLIGQLVEVRITEALPNSLRG 183 Query: 466 EL 467 EL Sbjct: 184 EL 185 >gi|298209270|ref|YP_003717449.1| putative Fe-S oxidoreductase [Croceibacter atlanticus HTCC2559] gi|83849197|gb|EAP87066.1| putative Fe-S oxidoreductase [Croceibacter atlanticus HTCC2559] Length = 435 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 131/454 (28%), Positives = 228/454 (50%), Gaps = 45/454 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRI 87 V + GC NVYDS + + + V+ ++ +++V+NTC + A E+ V + L + Sbjct: 13 VITLGCSKNVYDSEVLMGQLKANNKDVVHE-EEGNVVVINTCGFIDNAKEQSVNTILDAV 71 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 + + I + V V GC+++ ++ + P V+ G LP LL Sbjct: 72 KQKEEGIIDK-----VFVTGCLSERYKPDLQKDIPEVDQYFGTT---ELPSLL------- 116 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + + DY E ER++ Y A+L I EGCD+ C+FC +P RG S + Sbjct: 117 KALGADYKHELVGERVTTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGKHRSTPI 169 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRLR 264 +V +A+ L NGV E+ L+ Q++ + GLD +K ++LL L +++G+ +RL Sbjct: 170 EDIVADAKSLAANGVKELILIAQDLTYY---GLDLYKKRNLAELLRELVKVEGIEWIRLH 226 Query: 265 YT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 Y T P D+ D + + + YL +P+Q SD+ILKSM R T + +++ Sbjct: 227 YAFPTGFPMDVLDVM----NEEPKICNYLDIPLQHISDKILKSMRRGTTQEKTTKLLKEF 282 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P +AI + IVG+PGET++DF+ V + + + F YS T N+ + V Sbjct: 283 RAKVPTMAIRTTLIVGYPGETEEDFQILKQWVKDMRFERLGCFTYSHEENTHAYNLEDDV 342 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS- 437 E+VK +R + + + N +G+ +V+I++ KE G VGR SP + + Sbjct: 343 PEDVKQDRANQIMEIQGQISWELNQQHIGKEFKVVIDR--KEGGYFVGRTEFDSPDVDNE 400 Query: 438 VVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 V+++++ H + + + V+IT+ LY E V+ Sbjct: 401 VLIDAEKHYLKTAEFVTVKITEASDFDLYAEPVI 434 >gi|282878890|ref|ZP_06287654.1| MiaB-like protein [Prevotella buccalis ATCC 35310] gi|281298889|gb|EFA91294.1| MiaB-like protein [Prevotella buccalis ATCC 35310] Length = 432 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 124/453 (27%), Positives = 215/453 (47%), Gaps = 45/453 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK-VYSFLGRI 87 + GC N+ DS + F + GY+ + + D ++ V+NTC E A E+ + + L + Sbjct: 10 TMGCSKNLVDSETLMKQFEANGYDCTHDSEQPDGEIAVINTCGFIETAKEESINTILQFV 69 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-- 145 K R+ + + V GC+++ E+ P V+ G Y +L L +A Sbjct: 70 EAKKEGRLNK-----LFVMGCLSERYKNELENEIPEVDKFYGKFNYKQLLADLGKAEIKA 124 Query: 146 --GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+R + T A++ I EGCD+ C +C +P G + Sbjct: 125 CSGQRHLTTPAHY---------------------AYIKIAEGCDRHCAYCAIPIITGKHV 163 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR +++ E R L+ +G+ E ++ Q + + G LDG++ +DL+ +++I+G+ + Sbjct: 164 SRPKDEILQEVRNLVADGMKEFQIIAQEL-TYYGVDLDGKR-HIADLISEMADIEGVEWI 221 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++P L+ + + YL + +Q SD +L+ M+R E +I IR Sbjct: 222 RLHYAYPNQFPLELLDVMNEKQNVCKYLDIALQHISDSVLERMHRHVNKQETMDLICTIR 281 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQV 382 P I + + +VGFPGET++DF+ +D V + + +F YS GT G+N + + Sbjct: 282 EKVPGIHLRTTLMVGFPGETEEDFQQLLDFVRWARFERMGAFMYSEEEGTYGANHYADDI 341 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438 E+VK RL L +E A +G ++V+I++ KE +GR SP + Sbjct: 342 PEDVKQRRLDELMAVQQEISAEIEAAKIGSTMKVIIDR--KENDYFIGRSEFCSPEVDPE 399 Query: 439 VL---NSKNHNIGDIIKVRITDVKISTLYGELV 468 +L K IG +V+ITD + LYGE+V Sbjct: 400 ILIQGGQKAVQIGSFYQVKITDAEEFDLYGEIV 432 >gi|281355187|ref|ZP_06241681.1| MiaB-like tRNA modifying enzyme YliG [Victivallis vadensis ATCC BAA-548] gi|281318067|gb|EFB02087.1| MiaB-like tRNA modifying enzyme YliG [Victivallis vadensis ATCC BAA-548] Length = 452 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 127/461 (27%), Positives = 217/461 (47%), Gaps = 43/461 (9%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++ S GC N+ D+ + + G D+ADL V+NTC +F+ Sbjct: 15 LYLVSLGCSKNLVDTEVIAGTLLTSGRTLAFEPDEADLYVINTC-----------AFIPA 63 Query: 87 IRNLKNSRIKEG-------GDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPE 138 R+ I++G L+VVAGC+ + + + +R+ P V++ G + Sbjct: 64 ARDEAREAIEDGIVWKQEKPGRLLVVAGCLTEWDKDGSVRKEYPEVDLWTGVNQVAEIAR 123 Query: 139 LLER-ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 LL+R + + + Y +D RL + A+L I +GC+ CT+C +P Sbjct: 124 LLDRQSTLPENAEEPVYLYDDCTPRLQLTLPHL-------AYLKIADGCNNRCTYCSIPG 176 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG +R + VV EAR LI+ GV E+ ++ Q++ + G T + LL +L+ + Sbjct: 177 IRGRLRTRPMESVVREARNLIEGGVRELLVIAQDITVY-GNDRPESGDTLARLLTALNAL 235 Query: 258 KGLVRLRYTTSHPRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 +G +R +HP ++ I A G+ VL PYL +P+Q SDRILK MNR T + Sbjct: 236 EGNFVIRLLYTHPAHYTEEFIDFMARGNTKVL-PYLDIPLQHISDRILKQMNRHVTRKQT 294 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 +++ ++R P + + + FI GFPGET+++++ K + + F YSP TP Sbjct: 295 EELLTKLRERIPGLTLRTTFITGFPGETEEEYQELKSFAKKFKFERCGVFPYSPEPRTPA 354 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVS----FNDACVGQIIEVLIEKHGKEKGKLVGR 431 + +QV + +R +L +QQ+S + VG+ + VL++ + G Sbjct: 355 AAFPDQVPAELAEQR----STELMKQQISIMKKLSKNQVGKTVRVLVDDVDENGAVARGA 410 Query: 432 --SPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +P + +V+ K + G V+IT L ELV Sbjct: 411 MDAPEIDNVIYIPKPKRLKPGKFCLVKITGTDGCDLIAELV 451 >gi|92119034|ref|YP_578763.1| MiaB-like tRNA modifying enzyme [Nitrobacter hamburgensis X14] gi|91801928|gb|ABE64303.1| MiaB-like tRNA modifying enzyme [Nitrobacter hamburgensis X14] Length = 423 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 119/378 (31%), Positives = 181/378 (47%), Gaps = 47/378 (12%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---DLIVLNTCHIREKAAEKVYSFLG 85 V ++GC++N ++S + + DDA D++++NTC + +A + Sbjct: 5 VVTFGCRLNAFESEVIR-----------RNADDAGLDDVVIVNTCAVTNEAVAQARQ--- 50 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 IR LK R +VV GC AQ E + + P V+ V+G R + AR Sbjct: 51 SIRKLKRERPSA----RIVVTGCAAQIE-PTMFAQMPEVDRVIGNDDKMR-GDTWRDART 104 Query: 146 GKRVVDTDYSVEDKFERLSIVD----------------GGYNRKRGVTAFLTIQEGCDKF 189 V D+ + ++ E++++ D GG R AF+ +Q GCD Sbjct: 105 AFAAV-ADFGIANE-EKIAVADIMAVTEMAPHLVEGFQGGLPR-----AFVQVQNGCDHR 157 Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249 CTFC++P+ RG S + VVD+ R L++ G EI L G ++ ++ G L G Sbjct: 158 CTFCIIPFGRGNSRSVPMGAVVDQVRVLVEAGHAEIVLTGVDLTSY-GADLPGGPRLGGL 216 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 + L + + RLR ++ + L+ A + + LMP+LHL +QSG D ILK M RR Sbjct: 217 IKRILRHVPEMRRLRISSIDSIEADRDLLDAVANEERLMPHLHLSLQSGDDMILKRMKRR 276 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 H+ + ++R +RPDIA +D I GFP ETDD F ++DLV F YSP Sbjct: 277 HSRRDAIDFCAQVRRLRPDIAFGADIIAGFPTETDDMFARSLDLVADCDLTFLHVFPYSP 336 Query: 370 RLGTPGSNMLEQVDENVK 387 R GTP M E +K Sbjct: 337 RPGTPAVRMPPVAGEVIK 354 >gi|332662118|ref|YP_004444906.1| 30S ribosomal protein S12 methylthiotransferase rimO [Haliscomenobacter hydrossis DSM 1100] gi|332330932|gb|AEE48033.1| Ribosomal protein S12 methylthiotransferase rimO [Haliscomenobacter hydrossis DSM 1100] Length = 437 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 126/451 (27%), Positives = 220/451 (48%), Gaps = 36/451 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSM--DDADLIVLNTCHIREKAAEKVYSFLGR 86 V + GC N+ DS + ++ V+ +DA+++++NTC + A ++ + Sbjct: 13 VITLGCSKNLVDSENLITQLRGNDFDVVHDSQEEDANVVIINTCGFIDLAKQESIDTILE 72 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +K K GG + V GC++Q E++ P V+ G LP LL + Sbjct: 73 YAEVK----KAGGIDKLFVTGCLSQRYKEDLELEIPEVDAYFGT---LELPGLLAK---- 121 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++ DY E ERL Y A+L I EGC++ C+FC +P RG +SR Sbjct: 122 ---LNADYKHELIGERLITTPMHY-------AYLKISEGCNRTCSFCAIPLMRGGHVSRP 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265 + ++V EA+ L GV EI L+ Q + + GLD +K LL++L++++G+ +R Sbjct: 172 IEELVKEAQSLARRGVKEIMLIAQELTYY---GLDIYKKRDLPRLLHALADVEGIEWIRL 228 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P ++ + + YL +P+Q S+ +L+ M R+ T E ++I + R Sbjct: 229 HYAYPSKFPLEILDVIAERPEICNYLDMPLQHASNSVLERMRRQITREETTELIQQARLR 288 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P++ + + +VG+P E+D +F+ D V ++ + + F+YS T ++ + V Sbjct: 289 IPNLTLRTTMLVGYPQESDQEFQELCDFVQEMEFDRMGVFQYSHEESTRAYDVDDDVPAE 348 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441 VKAER L + +E N VG+ + L ++ KE G VGR SP + + VL Sbjct: 349 VKAERANALMEIQQEISTRKNFEKVGKTFKTLFDR--KEGGYFVGRTEGDSPEVDNEVLV 406 Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELVV 469 N IGD +VRI + ++GE++ Sbjct: 407 PAKKNFARIGDFAQVRIAEASEYDIFGEIIA 437 >gi|224536031|ref|ZP_03676570.1| hypothetical protein BACCELL_00895 [Bacteroides cellulosilyticus DSM 14838] gi|224522356|gb|EEF91461.1| hypothetical protein BACCELL_00895 [Bacteroides cellulosilyticus DSM 14838] Length = 439 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 114/393 (29%), Positives = 200/393 (50%), Gaps = 22/393 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILRDAGVRTARKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K+ VVV GC AQ + E + + V+VV+G + L + L + + Sbjct: 73 ----VKQHPGAFVVVTGCYAQLKPETVAKIEG-VDVVLGAEQKKDLLQYLGNLQKNESGE 127 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +++D G +R R FL +Q+GCD FC++C +P+ RG + +++ + Sbjct: 128 AYASALKDIHSFAPSCSRG-DRTR---YFLKVQDGCDYFCSYCTIPFARGRSRNGTIASM 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++AR+ G EI L G N+ + GK GE TF +L+ +L E++G+ R R ++ P Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--TFFNLVKALDEVEGIERYRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I+ MP+ H+P+QSGSD +LK M RR+ + + +++ V PD Sbjct: 240 NLLTDEIIEFVSHSRSFMPHFHIPLQSGSDEVLKLMRRRYDTELFASKVRKVKEVMPDAF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDENVK 387 I D IVG GETD+ F + + + Q F YS R GT +++ +++ + Sbjct: 300 IGVDVIVGTRGETDEYFEQAYEFIKSLDVTQLHVFSYSERPGTQALKIDHVVTPEEKHRR 359 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 ++RLL L E+ +F +GQ + VL+E+ Sbjct: 360 SQRLLELSD---EKTHAFYARHIGQTLPVLLER 389 >gi|167836430|ref|ZP_02463313.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia thailandensis MSMB43] Length = 463 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 129/467 (27%), Positives = 216/467 (46%), Gaps = 54/467 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ +G Sbjct: 21 SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77 Query: 91 KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146 + E G V+V GC+ A G ++ P V V GP + +++ + Sbjct: 78 ----LAENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQVV-HSHLP 130 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K D F L + G A+L I EGC+ C+FC++P RG +SR Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSRP 181 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 +++V+ EA L +GV E+ ++ Q+ +A W G+ L + ++L+ +L Sbjct: 182 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---RTRMTELVGALG 238 Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRH 310 E+ VRL Y +P + A G L D ++PYL +P Q +LK M R Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKDHVLPYLDVPFQHAHPDVLKRMKRPA 298 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 A + + + R + PD+ I S FI GFPGET+ F +D + + + F YSP Sbjct: 299 NAERVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAELDRVGCFAYSPV 358 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 G + + + ++++ R + E + + VG+ ++VLI++ +E G VG Sbjct: 359 EGASANELDGALPDDMREARRARFMEVAEEVSAARIERKVGKTLKVLIDEVNEEGG--VG 416 Query: 431 RS----PWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 R+ P + VV SK + +GD + V+IT L+GE+ Sbjct: 417 RTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 463 >gi|255691410|ref|ZP_05415085.1| 2-methylthioadenine synthetase [Bacteroides finegoldii DSM 17565] gi|260623056|gb|EEX45927.1| 2-methylthioadenine synthetase [Bacteroides finegoldii DSM 17565] Length = 439 Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 120/430 (27%), Positives = 209/430 (48%), Gaps = 23/430 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K+ VVV GC AQ + ++ + V+VV+G + L + L + ++ Sbjct: 73 ----VKQHPGAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGNLQKHEKGE 127 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + +D + +R FL +Q+GCD FC++C +P+ RG + +++ + Sbjct: 128 AITTATKD----IRSFSPSCSRGDRTRFFLKVQDGCDYFCSYCTIPFARGRSRNGTIASM 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++AR+ G EI L G N+ + GK GE TF DL+ +L +I+G+ R R ++ P Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--TFFDLVQALDQIEGIERYRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I+ MP+ H+P+QSG D +LK M RR+ + + +I+ V PD Sbjct: 240 NLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLKLMRRRYDTALFASKVKKIKEVMPDAF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVK 387 I D IVG GET + F + + Q F YS R GT + + +++ + Sbjct: 300 IGVDVIVGTRGETAEFFEQAYRFISGLDVTQLHVFSYSERPGTQALKIDYVVSPEEKHQR 359 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447 ++RLL L E+ +F +GQ + VL+EK K + G + V + S N Sbjct: 360 SQRLLALSD---EKTQAFYARHIGQTMSVLLEK-SKGNTPMHGFTKNYIRVEVGSDNSLD 415 Query: 448 GDIIKVRITD 457 ++ VR+ D Sbjct: 416 NQVVNVRLGD 425 >gi|221633225|ref|YP_002522450.1| MiaB-like tRNA modifying protein YliG [Thermomicrobium roseum DSM 5159] gi|221155400|gb|ACM04527.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Thermomicrobium roseum DSM 5159] Length = 470 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 126/460 (27%), Positives = 217/460 (47%), Gaps = 38/460 (8%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P RF + + GC N DS M ++G + + D+A ++V+NTC A + + Sbjct: 4 PLRFHIVTLGCSKNQVDSEGMAQRLIARGLQPTDEPDEAAVLVVNTCGFLAAARAESRAA 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + + +R + G +++ AGC+ + + P ++ V + R+ ++ Sbjct: 64 IEEL----AARRRPGQ--IIIAAGCMVSLD-QHRAELPPGLDAYVPTHDWNRIDAVVADL 116 Query: 144 RFGKRVVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G + S D F RL + R +A++ I +GCD C+FC +P +G Sbjct: 117 -LGLPIPSVLESTRDLPSFPRLPV--------RRPSAYVKIADGCDHRCSFCAIPLIKGN 167 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSE-IKG 259 + S+ S++V E R+L++ G E+ L+ Q+ + G D G + DLL S++E + Sbjct: 168 QRSKRPSEIVREIRELVNAGTKEVILVAQDTIRY---GADLGLRNGLPDLLRSIAEHVPD 224 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L LR +P + LI +L +PYL +P+Q +L+ M R YR++I Sbjct: 225 LPWLRLLYLYPSPLLFRLIDTMAELKPCVPYLDIPLQHADPVLLRRMMRPSDPDFYRRLI 284 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R PD+A+ + FIVGFPGETD+ FR D V ++ + F YS TP + M Sbjct: 285 AYARERLPDVALRTTFIVGFPGETDEQFRRLYDFVAEMEFDHVGVFVYSREQPTPSARME 344 Query: 380 EQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGK-----------EKG 426 + V V ER L + +Q++S+ N VG+I+ +L+E G+ G Sbjct: 345 DPVPPEVAEERRAALMEL--QQRISWARNKTLVGKILPILVEGTGEVEDERGNRAPLSAG 402 Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 + +P + +V + +G+ + VRIT + L+ E Sbjct: 403 RAARHAPEVDGLVFVPEELPLGEFVTVRITQAEPYDLWAE 442 >gi|149045300|gb|EDL98386.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted), isoform CRA_c [Rattus norvegicus] Length = 578 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 125/457 (27%), Positives = 217/457 (47%), Gaps = 41/457 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 63 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 119 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ K VV+AGCV QA+ + + ++G Q R+ E++E Sbjct: 120 NSIKKAHEENKK------VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V E +RL + +D RK + ++I GC CT+C + RG Sbjct: 171 KGHSVRLLGQKKESG-KRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257 S + ++V+ A++ GVCEI L ++ A+ R G D LL+ L E+ Sbjct: 230 ASYPIDELVERAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 284 Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 G+ Y H +M+ L + + +LH+PVQS SD +L M R + Sbjct: 285 AMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMDMKREYCVA 339 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 ++++++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ PR GT Sbjct: 340 DFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGT 399 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGR 431 P + +QV +VK +R L + S+N D +G+ +VL+ + + V Sbjct: 400 PAAKA-KQVPAHVKKQRTKDLSRVFH----SYNPYDHKIGERQQVLVTEESFDSKFYVAH 454 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + + V++ +G +++V I + L G+ V Sbjct: 455 NRFYEQVLVPKNPAFMGKMVEVDIYESGKHFLKGQPV 491 >gi|134046253|ref|YP_001097738.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C5] gi|132663878|gb|ABO35524.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C5] Length = 425 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 127/455 (27%), Positives = 233/455 (51%), Gaps = 44/455 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++ YGC +N D+ +++ + +E +++DD+D+IV+NTC +R++ ++ S + Sbjct: 2 KIYIEGYGCTLNTADTEIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--- 141 ++L D VVVAGC+A+A ++I + +V+V P+ ++L+ Sbjct: 62 EYFKSL---------DKKVVVAGCMAKALPKKI---KTLADVLVMPREAQYSGKILKDNL 109 Query: 142 ----RARFGKRVVDTDYSVEDKF-ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 + GK + + + ED+ E++ V +G+ L I EGC CT+C+V Sbjct: 110 LKGCSEKNGKS--NENLNFEDQLNEKIKKVSS-----QGLITALPICEGCLGSCTYCIVK 162 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 RG S +V +A +L+ G + + Q+ + GLD + +L+ +SE Sbjct: 163 RARGNLASYDRDLIVKKAEELVKTGTKCLLVTAQDTACY---GLDNND-SLPNLINDISE 218 Query: 257 IKGLVRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 I +R H + + D LI++ V+ +LHLP+QSG D++LK MNR +T Sbjct: 219 IPEKFAMRIGMMHAKFAEPILDELIESFKSKKVV-KFLHLPIQSGDDQVLKDMNRNYTVD 277 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 EY +++ +S ++ ++D IVGFP ET++ F T+++V KI + KYS R T Sbjct: 278 EYISVLNEFKSKIKNLNFTTDVIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYT 337 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 + +L+QVD ++ ER L + RE N +G+ E+L+ K +G + Sbjct: 338 KAA-ILKQVDTKIRKERSEILNELRRELSYENNTRHIGETFEILVTKSN------MGVTD 390 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++V+ + IG+ +V++T K L G+L+ Sbjct: 391 NCKNVIF-EEPAKIGEFRRVKVTGAKTFGLSGKLL 424 >gi|313238118|emb|CBY13216.1| unnamed protein product [Oikopleura dioica] Length = 425 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 119/439 (27%), Positives = 202/439 (46%), Gaps = 40/439 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 S GC N+ DS M G + AD++++NTC + A E + + G + Sbjct: 9 SLGCAKNLIDSEVMIGHLAQAGMSLTPDPELADVLIVNTCSFIDMAKKESIDAIFGAVDG 68 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K +E ++VAGC++Q E+ P V+ +GP + + Sbjct: 69 RKTDPDRERQK--IIVAGCLSQRFATELPGIMPEVDAFIGPSATEDPRDFV--------T 118 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + Y + R+ + + A++ I EGC+ CTFC++P RG SR+ Sbjct: 119 LKPQYVPDFSTPRIRLTPDHF-------AYVKIAEGCNHTCTFCIIPKIRGQHRSRTQES 171 Query: 210 VVDEARKLIDNGVCEITLLGQN-----VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 V E L+ +GV EI L+ Q+ ++ W G L CT LL ++ I+G +R Sbjct: 172 VFKEVEALVKSGVKEINLISQDTTYFGMDQWEGNSL----CT---LLRQINTIEGDFWVR 224 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +HP SD LI+ + D + Y+ +P+Q SD +L +M R + R ++ R+R+ Sbjct: 225 LLYTHPAHWSDELIETIAECDKVAKYVDIPLQHISDHMLSAMKRVTSGDYIRDLLRRMRA 284 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P + I + FIVGFPGET++DF ++ + + + +A F+YS GT M Q+ Sbjct: 285 GIPGLGIRTTFIVGFPGETEEDFNELLEFIREFRFERAGVFQYSKEEGTRAYKMDGQLHH 344 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW----LQSVVL 440 + R +L++ N A VG+ + VL+E+ G V R+ W + V+ Sbjct: 345 ATRKSRWSRAMAELQKIAGETNQAQVGKAVRVLVEEPG------VARTQWDAPEIDGSVI 398 Query: 441 NSKNHNIGDIIKVRITDVK 459 + +G+ + I D + Sbjct: 399 VDEALPVGEFADITIGDWR 417 >gi|48243743|gb|AAT40846.1| hypothetical protein [Haemophilus influenzae] Length = 327 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 107/314 (34%), Positives = 171/314 (54%), Gaps = 36/314 (11%) Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--- 234 A+L I EGCD CTFC++P RG SRS++QV+DEA++L + GV E+ ++ Q+ +A Sbjct: 22 AYLKISEGCDHRCTFCIIPSMRGDLESRSITQVLDEAKRLAEAGVKELLVVSQDTSAYSM 81 Query: 235 -------------WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281 W G + + T L L ++ VRL Y +P D LI Sbjct: 82 DLKRQEGGVKTAFWNGMPIKNDLMT---LCKQLGKLGIWVRLHYVYPYPH--VDDLIPLM 136 Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341 D L+PYL +P+Q S +ILK+M R + + I + R + PD+ + S FI+GFPG Sbjct: 137 AD-GTLLPYLDIPLQHASPKILKAMKRPGSIDRTLERIKQWREICPDLTLRSTFILGFPG 195 Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401 ET++DF+ +D + + + FK+SP G P ++M +QV E+VK ER + +Q Sbjct: 196 ETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAPATDMADQVPEDVKEERFHRFMQ--LQQ 253 Query: 402 QVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV----LNSKNHNIGDII 451 ++S N +G+ ++VL+++ +E ++GRS P + +V L+ N +GD+I Sbjct: 254 EISANRLKQKIGKTLDVLVDEIDEE--GIIGRSKADAPEVDGLVYVDNLSGINVKVGDVI 311 Query: 452 KVRITDVKISTLYG 465 KV IT+ L+G Sbjct: 312 KVTITNSDEYDLWG 325 >gi|227823742|ref|YP_002827715.1| MiaB-like tRNA modifying enzyme [Sinorhizobium fredii NGR234] gi|227342744|gb|ACP26962.1| MiaB-like tRNA modifying enzyme [Sinorhizobium fredii NGR234] Length = 404 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 109/326 (33%), Positives = 159/326 (48%), Gaps = 15/326 (4%) Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLERARFGKRVVDTDYSV 156 ++V GC AQ E E + V+ V+G + +Y LP+ A RV D Sbjct: 45 IIVTGCAAQTEKETFAEMAE-VDAVLGNEEKLKSASYRSLPDFGVSAEEKLRVNDIMSVR 103 Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216 + + +DG V AF+ +Q GCD CTFC++PY RG S + VVD+AR+ Sbjct: 104 ATAPQMIRHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVDQARR 157 Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276 L+++G EI L G + ++ G L G L ++ ++RLR ++ + Sbjct: 158 LVESGYREIVLTGVDATSY-GADLPGTPTLGLLARTLLKQVPDILRLRLSSIDSIEADRH 216 Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336 L+ D MP+LHL +Q G D ILK M RRH++ E R +R +RP+I+ +D I Sbjct: 217 LLDLIADEPRFMPHLHLSLQHGDDLILKRMKRRHSSAEARAFCAEVRRLRPEISFGADMI 276 Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396 GFP ET+ F L + G A F YSPR GTP + M Q D + ER L+ Sbjct: 277 AGFPTETEAMFDNAARLAEDCGIAYLHVFPYSPRPGTPAARM-PQPDRALVKERAARLRG 335 Query: 397 KLREQQVSFNDACVGQIIEVLIEKHG 422 K E + D VG +L+E +G Sbjct: 336 KGAELYAAHLDRMVGSEQTILVEMNG 361 >gi|330995923|ref|ZP_08319818.1| tRNA methylthiotransferase YqeV [Paraprevotella xylaniphila YIT 11841] gi|329574262|gb|EGG55837.1| tRNA methylthiotransferase YqeV [Paraprevotella xylaniphila YIT 11841] Length = 447 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 131/441 (29%), Positives = 215/441 (48%), Gaps = 36/441 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G V + + AD+ V+NTC + E A K R Sbjct: 16 TLGCKLNFAETSTIGRLLKEMGVRTVRAGERADICVVNTCSVTEVADHKC-------RQA 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTY--------YRLPELL 140 + +K+ VVV GC AQ + E++ S I V++V+G + RLP LL Sbjct: 69 IHKLVKQHPGAFVVVTGCYAQLKPEQV---SAIDGVDLVLGAEQKGDILRYLEERLP-LL 124 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 R Y+V K + +R R FL +Q+GCD +CT+C +PY R Sbjct: 125 PAERKSADAEHAAYTVPTKDIHTFVPSCSCGDRTR---YFLKVQDGCDYYCTYCTIPYAR 181 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G + S++ +V +A + G EI L G N+ + GK GE +F DL+ +L ++G Sbjct: 182 GRSRNGSIASLVRQAEQAASEGGREIVLTGVNIGDF-GK-TTGE--SFLDLVKALDRVEG 237 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R R ++ P +++ ++ + MP+ H+P+QSGSD +LK M RR+T + + I Sbjct: 238 IARYRISSIEPNLLTEDVLAFCAESRAFMPHFHIPLQSGSDEVLKLMRRRYTTNFFAEKI 297 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R++ + PD I D IVG GETD F + + +Q F YS R GT + Sbjct: 298 SRVKELMPDAFIGVDVIVGTRGETDGCFEEAFGFIRSLDVSQLHVFSYSERPGTMALKIG 357 Query: 380 EQV---DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 V +++ +++RLL L E +F +G EVL+EK + +G + G + Sbjct: 358 HSVSPEEKHRRSQRLLELSDVKWE---AFYRRYIGTEAEVLLEK-SRTEGVMHGFTANYI 413 Query: 437 SVVLNSKNHNIGDIIKVRITD 457 V L + + I++VR+ D Sbjct: 414 RVELPVEGNLDNQIVRVRLGD 434 >gi|254451116|ref|ZP_05064553.1| MiaB-like tRNA modifying enzyme [Octadecabacter antarcticus 238] gi|198265522|gb|EDY89792.1| MiaB-like tRNA modifying enzyme [Octadecabacter antarcticus 238] Length = 405 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 126/433 (29%), Positives = 205/433 (47%), Gaps = 43/433 (9%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN Y++ M+++ + G + + +++NTC + +A K + ++R Sbjct: 1 MNAYETEAMKELAGAAGVQ--------NAVIVNTCAVTAEAVRKAKKEIRKLR------- 45 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRL-PELLERARFGKR 148 +E D ++V GC AQ E E + P V+ V+G T+ + P+L+ + + Sbjct: 46 RENPDATLIVTGCAAQTEPETFIA-MPEVSKVIGNTEKMQAATWAGMAPDLIGQTEPVQ- 103 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 VD SV + L +DG R R A++ +Q GCD CTFC++PY RG S Sbjct: 104 -VDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRSVPAG 157 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 VV++ ++L+ G EI L G ++ +W G L ++ L + L RLR ++ Sbjct: 158 VVVEQIKRLVGKGYNEIVLTGVDLTSW-GADLPALPKLGDLVMRILKLVPDLPRLRISSI 216 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++ D L+ A LMP+LHL +Q G D ILK M RRH + + + R +RPD Sbjct: 217 DSIEVDDNLLCAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIKFSEDARKLRPD 276 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM--LEQVDENV 386 + +D I GFP ET+ F ++ L+D F YSPR GTP + M + D V Sbjct: 277 MTFGADIIAGFPTETEAHFENSLKLIDDCALTWLHVFPYSPRQGTPATRMPAVNGKDITV 336 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 +A RL + +S A +G+ +VL+E +GR+ V + +H Sbjct: 337 RAARLRAAGDVAVAKHLS---AQLGKTHQVLMEN------PRMGRTEQFTEVTFET-DHP 386 Query: 447 IGDIIKVRITDVK 459 II +I ++ Sbjct: 387 ESQIITAKIIGIR 399 >gi|303237126|ref|ZP_07323696.1| MiaB-like protein [Prevotella disiens FB035-09AN] gi|302482513|gb|EFL45538.1| MiaB-like protein [Prevotella disiens FB035-09AN] Length = 452 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 126/438 (28%), Positives = 200/438 (45%), Gaps = 25/438 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ G + AD+ ++NTC + E A K R + Sbjct: 16 TLGCKLNFSETSTFARSLREMGVREAKKDEIADICLINTCSVTEVADHKC-------RQI 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N ++ +VV GC AQ G E + P VN+V+G L + L A + + Sbjct: 69 INRMARQNPGAFIVVTGCYAQL-GSERVAEIPGVNLVLGSNEKANLIQFLSDA-WNNPTI 126 Query: 151 DTDYSVEDK---FERLSIVD-----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 T+ E K F + D +R FL +Q+GC+ FCT+C +PY RG Sbjct: 127 GTNSDEEKKKAIFHSVKTKDIVTFQPSCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFS 186 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 + ++ +V++A + G EI L G N+ + G+ +F DL+ +L +++G+ R Sbjct: 187 RNPTIQSLVEQAEQAAKEGGKEIVLTGVNIGDF-GRTTSE---SFLDLVKALDQVEGIER 242 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 R ++ P + D LI+ MP+ H+P+QSGSD +LK M+RR+ + I+ I Sbjct: 243 FRISSLEPDLIDDELIRYCATSRAFMPHFHIPLQSGSDEVLKLMHRRYDTALFAHKINLI 302 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + + PD I D +VG GE F + + + Q F YS R GT ++ V Sbjct: 303 KEITPDAFIGVDVMVGCRGEEPQYFDDCYNFLSSLPITQLHVFPYSERPGTSALSIPYVV 362 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 DE K R L + E F +G+ EVL+EK + K + G + V LN Sbjct: 363 DEKEKKCRARQLLQLSDEMTHKFYAEHIGKEAEVLLEKAVRGKS-MHGFTKNYIRVELNP 421 Query: 443 ---KNHNIGDIIKVRITD 457 + IIKVR+ D Sbjct: 422 TQVREEYDNQIIKVRLGD 439 >gi|221067926|ref|ZP_03544031.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni KF-1] gi|220712949|gb|EED68317.1| MiaB-like tRNA modifying enzyme YliG [Comamonas testosteroni KF-1] Length = 468 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 135/486 (27%), Positives = 217/486 (44%), Gaps = 71/486 (14%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 Q +P+ FV S GC + DS + ++GY+ + + ADL+++NTC + A ++ Sbjct: 11 QTAIPKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFIDDAVKE 69 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-----ILRRSPIVNVVVGPQTYY 134 +G V+V GC+ G++ + P V V GP Sbjct: 70 SLDTIGEALAANGK---------VIVTGCLGAKAGKDGGSTMVAEVHPSVLAVTGPHAT- 119 Query: 135 RLPELLERARFGKRVVDTDYS----VEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCD 187 + V+D ++ D F L S D G A+L I EGC+ Sbjct: 120 ------------QEVMDAVHTHLPKPHDPFVDLVPGSFGDAGIKLTPKHYAYLKISEGCN 167 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WR 236 CTFC++P RG +SR + V+ EA+ L + GV E+ ++ Q+ +A W Sbjct: 168 HRCTFCIIPSMRGDLVSRPIGDVLKEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFWD 227 Query: 237 GKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295 GK + +D L L++ G VRL Y +P + + A G + +PYL +P+ Sbjct: 228 GKPVKTRMLELADELGKLAQQHGAWVRLHYVYPYPTVDAVLPLMAEGKI---LPYLDVPL 284 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMD 352 Q +LK M R + + +DRIR R P++ I S FI GFPGET+++F ++ Sbjct: 285 QHSHPDVLKRMKRPASG---EKNLDRIREWRKICPELVIRSTFIAGFPGETEEEFEHLLN 341 Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412 + + +A F YSP G + + + E V+ R + E VGQ Sbjct: 342 FIREAEIDRAGCFAYSPVDGATANELPGMLPEEVREARRARFMEVAEEVSTQRLQRRVGQ 401 Query: 413 IIEVLIEKH---GKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVK 459 +++VL++K GK+ G VGR+ P + VV SK + +G++I VRI + Sbjct: 402 VMKVLVDKAVSLGKKGG--VGRTYADAPEIDGVVHIQPPEKASKTYKVGELISVRIVGTQ 459 Query: 460 ISTLYG 465 L G Sbjct: 460 GHDLVG 465 >gi|329957659|ref|ZP_08298134.1| tRNA methylthiotransferase YqeV [Bacteroides clarus YIT 12056] gi|328522536|gb|EGF49645.1| tRNA methylthiotransferase YqeV [Bacteroides clarus YIT 12056] Length = 445 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 115/390 (29%), Positives = 189/390 (48%), Gaps = 16/390 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K+ VVV GC AQ + + + + V+VV+G + L + L K Sbjct: 73 ----VKQHPGAFVVVTGCYAQLKPDAVAKIEG-VDVVLGAEQKKDLLQYL--GDLKKHES 125 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y+ + + +R FL +Q+GCD +C++C +P+ RG + S++ + Sbjct: 126 GEAYT--SALKDIRSFAPSCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGSIASL 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++AR+ G EI L G N+ + GK GE TF DL+ +L E++G+ R R ++ P Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDEVEGIERYRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +IK MP+ H+P+QSGSD +LK M RR+ + + RI+ V PD Sbjct: 240 NLLTDEIIKFVSRSKRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKVRRIKEVMPDAF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I D IVG GET++ F + + Q F YS R GT + V K R Sbjct: 300 IGVDVIVGTRGETEEYFEQAYRFIQGLDVTQLHVFSYSERPGTQALKIDHVVSSEEKHRR 359 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 L + E+ +F +GQ + VL+E+ Sbjct: 360 SQLLLELSDEKTRAFYARHIGQTMPVLLER 389 >gi|325474677|gb|EGC77863.1| MiaB-like tRNA modifying enzyme YliG [Treponema denticola F0402] Length = 474 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 133/467 (28%), Positives = 221/467 (47%), Gaps = 65/467 (13%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++FF+ +GC N D+ + + + ++ + D+ADLI++N+C A E+ + + Sbjct: 4 KKFFMDLHGCAKNQVDAELIIGIMENLSWKNTSDPDEADLIIVNSCGFINSAKEESINAV 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + + + R K +++AGC+A+ + + P + + G LP+L++ + Sbjct: 64 LQAK-AAHPRTK------ILLAGCLAERYADILKNDLPEADGIFGNGNLSLLPQLID-SM 115 Query: 145 FGKRVVDTDYSVEDKF-------ERLSIVDGGYNRKRGV--TAFLTIQEGCDKFCTFCVV 195 F K+ + E+KF ++ I G + + ++ I EGCD FC+FC + Sbjct: 116 FPKK------TSEEKFIDKILIPPQIGICGGERPKILNFPRSTYIKITEGCDNFCSFCAI 169 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-GKG------LDGEKCT-F 247 P RG SR + + DE + + G E L+GQ++ A++ GK L E C+ Sbjct: 170 PIIRGRLRSRPIKDICDEIKTFLKKGFYEFNLIGQDLAAYQTGKNDLNENELYRENCSGL 229 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL---------MPYLHLPVQSG 298 + LL S+SEIKG ++R HP H LD+L +PY +P QSG Sbjct: 230 ALLLKSISEIKGNFKIRLLYIHPD---------HFPLDILPIMTADKRFLPYFDIPFQSG 280 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIR-------SVRPDIAISSDFIVGFPGETDDDFRATM 351 + +I+++MNR A Y II IR S + I + F+VGFPGETD+DF T+ Sbjct: 281 AQKIIRAMNRNGAAEVYLDIIKNIREAFEKAKSPYGEPQIRTTFLVGFPGETDEDFNETI 340 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411 + ++ + F YS TP + +V + RL +Q D+ +G Sbjct: 341 KFLKELRPLWSGGFTYSREEDTPSYSFKGKVPKKTAEARLAEIQNTQTSITEKKLDSFIG 400 Query: 412 QIIEVLIEK--HGKEKGKLVGRSPWLQ------SVVLNSKNHNIGDI 450 + IEVL+E+ ++K L W Q +VVLN N N DI Sbjct: 401 KEIEVLVEELIQAEDKAFLALGRAWFQAPEVDGAVVLNF-NLNKKDI 446 >gi|242399008|ref|YP_002994432.1| Probable 2-methylthioadenine synthetase [Thermococcus sibiricus MM 739] gi|242265401|gb|ACS90083.1| Probable 2-methylthioadenine synthetase [Thermococcus sibiricus MM 739] Length = 424 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 127/446 (28%), Positives = 226/446 (50%), Gaps = 27/446 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R +++YGC N D+ ME + GYE V+ +D AD +++NTC +++ + + Sbjct: 2 RVHIETYGCTRNKADAEMMEALLLRAGYEVVD-LDSADYVIMNTCAVKDPTEKHMAR--- 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI+ L +S + V+V GC+ I R V+ ++G ++ R+ +E A Sbjct: 58 RIKELLDSGKR------VIVTGCLPHVNPSAIDER---VSGILGVKSIDRIIGAIELAER 108 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G+++++ + E ++L I K GV + I EGC CT+C + RG+ S Sbjct: 109 GEKLINVEGWRERSIDKLEIPRVW---KGGVVFVVPISEGCLNACTYCATRFARGVLKSY 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +V ++ + G EI L ++ + G D + LL ++ I+G R+R Sbjct: 166 KPGLIVKWVKEAVAKGYKEIQLSSEDTGCY---GFDI-GTNLARLLDEITSIEGEFRIRV 221 Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +P + + D LI+A+ D + + +LHLPVQSG + ILK M R +T E+ +I+ Sbjct: 222 GMMNPNNAVKVLDELIEAYKD-NKIYKFLHLPVQSGDNEILKRMGRPYTVEEFEEIVREF 280 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R D+ +++D IVGFPGE+++ F+ T++L+ ++ + ++SPR GT + M +Q+ Sbjct: 281 RKHIKDLNLNTDIIVGFPGESEEAFQNTVELIKRVRPDKINVSRFSPRPGTVAARMKDQI 340 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 ER L + N +G+ +EVL +KG + GR+ + ++L Sbjct: 341 VGWRVKERSRYLHRLRLSISYEINRRYLGREMEVLTHGE-GKKGGIEGRTMNYKDIIL-- 397 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 +G+ +KV++T + L GELV Sbjct: 398 PEAPVGEFVKVKVTKTTSTYLLGELV 423 >gi|49474821|ref|YP_032863.1| hypothetical protein BQ13490 [Bartonella quintana str. Toulouse] gi|49240325|emb|CAF26807.1| hypothetical protein BQ13490 [Bartonella quintana str. Toulouse] Length = 427 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 114/375 (30%), Positives = 185/375 (49%), Gaps = 39/375 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S + S G +++ + D I+ NTC + +A KV + + + Sbjct: 7 TFGCRLNSYESEIIRKESASSGLDQLKN----DAIIFNTCAVTAEAVRKVKQAIRKAK-- 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144 +E ++V GC AQ E + V++V+G +Y +LP+ Sbjct: 61 -----RENPHARIIVTGCAAQTEARNFALMTE-VDLVLGNEEKLYAHSYCQLPD------ 108 Query: 145 FGKRVVDTDYSVEDKFERLSI----VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 FG D V D E I V R R AF+ +Q GCD CTFC++PY RG Sbjct: 109 FGINH-DEKLRVNDIMEVQKIAPHMVSAIEERTR---AFVQVQNGCDHRCTFCIIPYGRG 164 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKG 259 S + V+++ ++L +NG+ E+ L G ++ ++ G L G K T L+ + L + Sbjct: 165 PSRSVPMGAVIEQIKQLTNNGIQEVILTGVDLTSY-GHDLPG-KTTLGKLISTILHHVSD 222 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L RLR ++ + LI +MP+LHL +Q+G + ILK M RRH Q Sbjct: 223 LPRLRLSSIDSIEADQELINLLAYEKRIMPHLHLSLQAGDNMILKRMKRRHLREHAIQFC 282 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +R+ RP + +D I GFP ET++ F+ ++ LV++ F +SPR GTP + M Sbjct: 283 QDLRAKRPTMVYGADLIAGFPTETEEMFQNSLALVNECNLIHLHVFPFSPREGTPAARM- 341 Query: 380 EQVDENV---KAERL 391 Q++ + +AERL Sbjct: 342 PQINRKIVKMRAERL 356 >gi|168184612|ref|ZP_02619276.1| RNA modification enzyme, MiaB family [Clostridium botulinum Bf] gi|237795842|ref|YP_002863394.1| MiaB family RNA modification protein [Clostridium botulinum Ba4 str. 657] gi|182672297|gb|EDT84258.1| RNA modification enzyme, MiaB family [Clostridium botulinum Bf] gi|229260716|gb|ACQ51749.1| RNA modification enzyme, MiaB family [Clostridium botulinum Ba4 str. 657] Length = 445 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 133/441 (30%), Positives = 221/441 (50%), Gaps = 37/441 (8%) Query: 31 SYGCQMNVYDSLRMEDMFF--SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 S GC N DS E M + ++ E V +A +I++NTC E A E+ + + ++ Sbjct: 10 SLGCDKNRIDS---ELMLYKLNEEAELVKDPKEAQVIIVNTCGFIETAKEESINTILQMA 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGK 147 + K + ++VV GC+ Q E+ P +++++G Y +L E ++ + G+ Sbjct: 67 SYKKTH----NCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLKSGE 122 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + S K+ I +G NR TA++ I EGC+ FCT+C +P RG S Sbjct: 123 K------SFYHKYSDTKINEG--NRILTTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ E L GV EI L+ Q+ + G + G+K +LL +S++KG+ +R Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTMY-GIDIYGKK-VLHELLRDISKVKGVKWIR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P ++++ LI+ D + YL LP+Q S+ +LK M R+ T II ++R Sbjct: 233 LLYCYPEEITNELIEEIKSNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD- 383 I + + IVGFPGET+ +F + V I + FKYS GT + M EQ+D Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDIKLDKLGVFKYSKEEGTSAALMEEQIDE 352 Query: 384 --ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437 + + E ++ LQ+ + + N +G+I EV++E G ++ GR SP + Sbjct: 353 EIKEKREEEIMILQQSISK---DINKEKIGKIYEVIVE--GTKEDMYYGRNYEMSPEIDG 407 Query: 438 VVLNSKNHN--IGDIIKVRIT 456 + K+ N IGDIIKV++T Sbjct: 408 EICFEKDENVKIGDIIKVKVT 428 >gi|160901569|ref|YP_001567150.1| MiaB-like tRNA modifying enzyme YliG [Petrotoga mobilis SJ95] gi|238066434|sp|A9BEU9|RIMO_PETMO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|160359213|gb|ABX30827.1| MiaB-like tRNA modifying enzyme YliG [Petrotoga mobilis SJ95] Length = 435 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 129/455 (28%), Positives = 224/455 (49%), Gaps = 33/455 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F + GC N D + + S+GY+ ++ A+ I ++TC E+A ++ + Sbjct: 2 KKFHIVKLGCPKNDADMEIFKGLLQSKGYKYESNPQLANYIFIDTCGFIEEAKKESIETI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK++ +L V+ GC+ Q ++IL+ P ++ + G + + E +E Sbjct: 62 FEYVSLKDN----NKNLKVIPIGCLTQRYFDDILKDIPEIDGLYGVLSPKTIVEKIENGE 117 Query: 145 --FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 F + + +T Y + + +I D Y A++ I +GC + C FC +P +G Sbjct: 118 YFFKRDIPETLYDCKIR----AIPDSHY-------AYVKIGDGCSRNCAFCSIPTFKGKP 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLV 261 SRS+ ++ +E L+ GV EI L+ Q+ + G+D +K DLL L+ IKG Sbjct: 167 KSRSIEEINEEVEFLVSKGVKEIILVSQDNTLY---GIDNYQKQALPDLLDKLNNIKGKF 223 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R HP +S+ +I++ + ++ Y +P+Q SD+IL+SM R E ++ ++ Sbjct: 224 WIRVMYLHPDFLSEEIIESIHRNEKVLNYFDVPIQHISDKILQSMGRHKKRNELIKLFEK 283 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR + AI + +VGFPGE +DF +D V +I + + SF +S T + EQ Sbjct: 284 IR--KEPSAIRTTLMVGFPGEKAEDFEELVDFVKEIKFERMGSFIFSKEENTKSFTLPEQ 341 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQS 437 +DE +K +R L E + + +G+ +EVL+E+ KE VGRS P + Sbjct: 342 IDEQIKKQRQNELMTVQSEISKNIMEKYIGETLEVLLEE--KEDNVYVGRSYLDAPEIDG 399 Query: 438 VV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 V K G+ +KV IT L GE+V Sbjct: 400 NVYIKNFGDKELTFGNFVKVTITGSYEYDLEGEIV 434 >gi|300770675|ref|ZP_07080554.1| MiaB family RNA modification enzyme [Sphingobacterium spiritivorum ATCC 33861] gi|300763151|gb|EFK59968.1| MiaB family RNA modification enzyme [Sphingobacterium spiritivorum ATCC 33861] Length = 455 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 128/455 (28%), Positives = 222/455 (48%), Gaps = 39/455 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN---SMDDADLIVLNTCHIREKAAEKVYS 82 R V + GC N++DS + E V+ ++ + D++V+NTC + A ++ Sbjct: 27 RVNVITLGCSKNIHDSEVLMGQLKGNQMEVVHEASNIQNNDIVVINTCGFIDNAKQESID 86 Query: 83 FLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L+ S +KE G + V+V GC+++ E+ V+ G LPELL Sbjct: 87 TI-----LQYSELKEQGKINKVIVTGCLSERYKPELQAEISSVDAYFGTND---LPELLS 138 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + DY E ER+ + ++ I EGC++ C+FC +P RG Sbjct: 139 S-------IGADYRHELLGERMLSTPLHF-------SYFKIAEGCNRPCSFCAIPLMRGK 184 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 +S+ + +V EA+ L NG E+ L+ Q++ + GLD K SDLL +LS++ G+ Sbjct: 185 HVSKPMEDLVKEAKFLASNGTKELILIAQDLTYY---GLDIYGKRNLSDLLRNLSDVDGI 241 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++P ++ A + + YL +P+Q SD +LKSM R T + +++ Sbjct: 242 EWIRLQYAYPSGFPMDILDAMAERSNICNYLDMPLQHISDNMLKSMRRGTTKQKQIDLVN 301 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +IR PDIA+ + I G+PGET+ DF+ ++ V++ + + F YS T ++ + Sbjct: 302 QIRDKVPDIALRTTLICGYPGETEQDFQEMLEWVEESRFDRLGCFTYSHEEKTHAYSLTD 361 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436 V E VK R+ + + + N +G+ +VL++K + +GR SP + Sbjct: 362 DVPEEVKESRVEQIMEVQQGISYDINQEKIGKTYKVLVDK--VDGDYFIGRTEYDSPEVD 419 Query: 437 SVVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468 + VL S IGD ++V+I + LYG +V Sbjct: 420 NEVLISAKDTYARIGDFVQVKIDRAEDFDLYGTIV 454 >gi|154150044|ref|YP_001403662.1| MiaB-like tRNA modifying enzyme [Candidatus Methanoregula boonei 6A8] gi|153998596|gb|ABS55019.1| MiaB-like tRNA modifying enzyme [Methanoregula boonei 6A8] Length = 430 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 132/450 (29%), Positives = 218/450 (48%), Gaps = 59/450 (13%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R ++++YGC+ N D+ + + G V + +DAD +V+NTC + ++ L Sbjct: 23 KRVYIETYGCRYNFGDTANLVAVLKHYGSTVVPAPEDADAVVVNTCTVVGPTERRM---L 79 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R+ L+ + V GC+ + E IL + V++ P T R Sbjct: 80 RRLSALQEKPL--------FVTGCMPLVQREAIL--AVCSPVIIHPDTI----------R 119 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 R + T S E + IV I +GC CT+C+ RG S Sbjct: 120 EASRALMTVGS-----ESVGIVQ--------------IAQGCLGRCTYCITRRARGPLRS 160 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263 + ++ ++ + + G EI L Q+ +AW G D G++ DLL +LS I G RL Sbjct: 161 FPVQEIRNKIEEYVRAGAYEIQLTAQDTSAW---GRDTGQR--LPDLLTALSSIPGNFRL 215 Query: 264 RYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R +P + D LI A D L ++HLPVQSGSDRIL+ M R +T E+ +I+ Sbjct: 216 RVGMMNPATTLGILDDLIDAFAS-DRLFRFVHLPVQSGSDRILEQMGRGYTVREFEEIVS 274 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R PDI+I++DFIVGFPGET++DF +++L+ +I A+ +YSPR P + E Sbjct: 275 AFRGRYPDISIATDFIVGFPGETEEDFSRSLELIGRIRPAKVNVTRYSPR---PFTGPFE 331 Query: 381 QVD--ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 + D + VK +R L EQ V+ N +G ++ ++ + + G ++ R+ Q + Sbjct: 332 EKDFPDAVKKDRSRILNAYAEEQYVALNRPLLGTMVFCVVTEKIR-PGSVMARTASYQGL 390 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V+ + ++G VR+ + G+L+ Sbjct: 391 VIG-EELSVGTAAVVRLKKDRKYFFMGDLL 419 >gi|323137809|ref|ZP_08072884.1| MiaB-like tRNA modifying enzyme [Methylocystis sp. ATCC 49242] gi|322396812|gb|EFX99338.1| MiaB-like tRNA modifying enzyme [Methylocystis sp. ATCC 49242] Length = 385 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 121/414 (29%), Positives = 189/414 (45%), Gaps = 58/414 (14%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N+ DS E++ ER + I++NTC + +A + + R+ Sbjct: 10 VVTFGCRLNMVDS---EELARRHEGER-------ETIIVNTCAVTGEATRQARQAIRRLH 59 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +E + +VVAGC A+ + PQ + + + R Sbjct: 60 -------RERPEAEIVVAGCAAR----------------IDPQAFTSIEGV-------SR 89 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V+ E R + + G AFL IQ GCD CTFC++P RG S Sbjct: 90 VI-----AEQAQNRAAAAE------EGTRAFLAIQNGCDHSCTFCIIPLGRGASRSAPPQ 138 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++V +AR L++ G EI L G ++ ++ + L EI L RLR ++ Sbjct: 139 EIVAQARALVERGKQEIALTGVDLTSYDAD----GLRLGGLVRLLLREIPDLPRLRLSSI 194 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 + D LI A + + L P+LHL +Q+G D ILK M RRH+ E + +R RPD Sbjct: 195 DCIEADDDLIVAAAEEERLCPHLHLSLQAGDDLILKRMKRRHSRAEAIRFCGELRDARPD 254 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I +DFI GFP ET++ F T+ LV++ G F +SPR GTP + M QV V Sbjct: 255 IVFGADFITGFPTETEEMFTRTLGLVEECGLTHLHVFPFSPRPGTPAARM-PQVAREVAK 313 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRSPWLQSVVL 440 ER L++ D G+ + +L E+ G + R+P + + V+ Sbjct: 314 ERAARLREAGDAALARHLDRQKGKRLRLLTERGGMARAADFTPARTPGVAAGVM 367 >gi|194693708|gb|ACF80938.1| unknown [Zea mays] Length = 626 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 121/451 (26%), Positives = 212/451 (47%), Gaps = 34/451 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q +VK++GC N DS M + GY + ADL ++NTC ++ + + + + Sbjct: 55 QTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEDPEGADLWLINTCTVKNPSQSAMTTLI 114 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +N +VVAGCV Q G + L+ ++++ G Q R+ E++E Sbjct: 115 SKCKNANKP---------LVVAGCVPQ--GSQGLKELEGISII-GVQQIDRVVEVVEETL 162 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G V + L +D RK L I GC CT+C + RG S Sbjct: 163 KGHEVRLLSR------KTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGS 216 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 ++ +VD + ++ GV EI L ++ A+ G+ + + + + + LR Sbjct: 217 YTIDSLVDRVKTVVSEGVREIWLSSEDTGAY-GRDIGTNLPNLLNAIVAELPVDQSTMLR 275 Query: 265 YTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 ++P + + L + L + +LH+PVQSGSD +LK+MNR +T E+R+++D + Sbjct: 276 IGMTNPPFILEHLKEIAAVLCHPCVYSFLHVPVQSGSDSVLKAMNREYTVGEFRKVVDTL 335 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + P + I++D I GFPGETD+DF T++LV + + Q ++ PR GTP + M + Sbjct: 336 CELVPGMQIATDIICGFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVP 395 Query: 383 DENVKAERLLCLQKKLREQQVSFND-----ACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 VK K+ RE F G++ ++ I + + LVG + Sbjct: 396 SNEVK--------KRSRELTSVFESFSPYQGMEGKVEKIWITEIASDGVHLVGHTKGYIQ 447 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V++ + + +G +IT V +++G +V Sbjct: 448 VLVTAPDSMLGTSADAKITSVGRWSVFGVVV 478 >gi|299133084|ref|ZP_07026279.1| MiaB-like tRNA modifying enzyme [Afipia sp. 1NLS2] gi|298593221|gb|EFI53421.1| MiaB-like tRNA modifying enzyme [Afipia sp. 1NLS2] Length = 417 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 115/376 (30%), Positives = 185/376 (49%), Gaps = 32/376 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N+ +S M + G + D +++NTC + +A + + R+R Sbjct: 7 TFGCRLNLAESETMRAEADAAGVQ--------DAVIVNTCAVTNEAVAQARQTIRRLRRD 58 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF----- 145 +R ++V GC AQ + + P V+ V+G R + R Sbjct: 59 HPAR-------KIIVTGCAAQTD-SRMFAEMPEVDRVLGNDDKMRAHAWRDTRRAFDLDD 110 Query: 146 GKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++V D +V + L V+G ++ + AF+ +Q GCD CTFC++PY RG S Sbjct: 111 GEKVAVADIMAVREMAPHL--VEGFHSGQ--PRAFVQVQNGCDHRCTFCIIPYGRGNSRS 166 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 ++ V++ RKL++ G EI L G ++ ++ G L G + + L + L RLR Sbjct: 167 VAMGAAVEQVRKLVEGGCPEIVLTGVDITSY-GADLPGAPKLGALVKQILKHVPELKRLR 225 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ + L+ D + LMP+LHL +Q+G D +LK M RRH+ + D+ R Sbjct: 226 LSSIDSVEADRDLLDVIADDERLMPHLHLSLQAGDDLVLKRMKRRHSRADAIAFCDQARR 285 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +RPDIA +D I GFP ETDD F ++ LV+ F YS R GTP + M QV+ Sbjct: 286 LRPDIAFGADLIAGFPTETDDMFERSLALVEDCDLTFLHVFPYSKRPGTPAAKM-PQVEG 344 Query: 385 NVKAERLLCLQKKLRE 400 ER K+LR+ Sbjct: 345 RTIRER----AKRLRD 356 >gi|294809243|ref|ZP_06767959.1| MiaB-like protein [Bacteroides xylanisolvens SD CC 1b] gi|294443637|gb|EFG12388.1| MiaB-like protein [Bacteroides xylanisolvens SD CC 1b] Length = 418 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 114/396 (28%), Positives = 199/396 (50%), Gaps = 28/396 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 +K+ D VVV GC AQ + ++ + V+VV+G + L + L ++ G+ Sbjct: 73 ----VKQHPDAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + T + S D R R FL +Q+GCD FC++C +P+ RG + ++ Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++AR+ G EI L G N+ + GK GE +F DL+ +L +++G+ R R ++ Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVEGIERYRISS 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D +I+ MP+ H+P+QSG D +L+ M RR+ + + +I+ V P Sbjct: 237 IEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVKKIKEVMP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384 D I D IVG GET + F +D + Q F YS R GT ++ ++ Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + +++RLL L + + +F +GQ + VL+EK Sbjct: 357 HQRSQRLLALSDQKTQ---AFYARHIGQTMPVLMEK 389 >gi|187779001|ref|ZP_02995474.1| hypothetical protein CLOSPO_02596 [Clostridium sporogenes ATCC 15579] gi|187772626|gb|EDU36428.1| hypothetical protein CLOSPO_02596 [Clostridium sporogenes ATCC 15579] Length = 445 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 132/439 (30%), Positives = 220/439 (50%), Gaps = 33/439 (7%) Query: 31 SYGCQMNVYDSLRMEDMFF--SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 S GC N DS E M + ++ E V +A I++NTC E A E+ + + ++ Sbjct: 10 SLGCDKNRIDS---ELMLYKLNEEAELVKDPKEAQAIIVNTCGFIETAKEESINTILQMA 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RARFGK 147 + K + ++VV GC+ Q E+ P +++++G Y +L E ++ + G+ Sbjct: 67 SYKKTH----NCKVLVVTGCLTQRYKGELKDLIPEMDIMLGVNDYDKLLESIKIFLKSGE 122 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + S K+ + I +G NR TA++ I EGC+ FCT+C +P RG S Sbjct: 123 K------SFYYKYSDIKINEG--NRILTTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 RS ++ E L GV EI L+ Q+ + G + G+K +LL +S+++G+ +R Sbjct: 175 RSKENILKEVENLAKQGVKEIILIAQDTTMY-GIDIYGKK-VLHELLRDISKVEGVKWIR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P +++ LIK + D + YL LP+Q S+ +LK M R+ T II +R Sbjct: 233 LLYCYPEEITKELIKEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKELRK 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-- 382 I + + IVGFPGET+++F + V I + FKYS GT + M +Q+ Sbjct: 293 EIEGITLRTSLIVGFPGETEEEFSELKEFVSDIKLDKLGVFKYSKEEGTSAALMEDQIEE 352 Query: 383 -DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVV 439 + + E ++ LQ+K+ + N +G+I EV++E K G+ SP + + Sbjct: 353 EVKEKREEEIMILQQKISK---DINKEKIGKIYEVIVEGTKENMYSGRNYEMSPEIDGEI 409 Query: 440 LNSKNHN--IGDIIKVRIT 456 K+ N IGDIIKV++T Sbjct: 410 YFEKDENVKIGDIIKVKVT 428 >gi|282600941|ref|ZP_05980225.2| 2-methylthioadenine synthetase [Subdoligranulum variabile DSM 15176] gi|282570102|gb|EFB75637.1| 2-methylthioadenine synthetase [Subdoligranulum variabile DSM 15176] Length = 465 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 120/462 (25%), Positives = 226/462 (48%), Gaps = 26/462 (5%) Query: 3 LFIKLIGVAHMVSQIVD----QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS 58 L ++ GV+ ++ +++ + + R + GC++N ++ + +F GY V++ Sbjct: 7 LVLRFYGVSIIIRALLNTFDCKGTITMRVTFYTLGCKVNQNETGALAQLFEESGYTVVSN 66 Query: 59 MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL 118 + AD+ V+N+C + +K +L R + +E + V+ GC QA EE Sbjct: 67 EEAADVYVVNSCTVTNFGDQKSRKWLRRAK-------RENPGAVTVLTGCYPQAFPEEAS 119 Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGK--RVVDT-DYSVEDKFERLSIVDGGYNRKRG 175 + +VV G + ++ G+ RV+D + ++FE L + D R Sbjct: 120 EIAE-ADVVTGSGNRRSILHDVQMVLNGEQERVIDIRPHEKGERFEELPM-DKFAEHTR- 176 Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 AF+ +++GC++ C +CV+P RG SR S ++ E +L + G EI L ++ ++ Sbjct: 177 --AFVKVEDGCNRRCAYCVIPRARGPVRSREESSILQELHRLTEAGYKEIVLTAISLPSY 234 Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295 G D + +L+ + + G+ RLR + P + D +I + L P HL + Sbjct: 235 ---GTDS-GTSLVELVEKAAAVPGVERLRLGSLDPDMLHDEVILRLSRVKKLCPQFHLSL 290 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSV--RPDIAISSDFIVGFPGETDDDFRATMDL 353 QSG D+ L++M R +T ++ +I D++R +++ ++D IVGFPGET++DF A+M Sbjct: 291 QSGCDKTLRAMRRPYTTAQFAKIADKLRHAFGAENVSFTTDVIVGFPGETEEDFEASMAF 350 Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413 V + + F YS R GTP + +Q+ E+ K +R + + + G+ Sbjct: 351 VTGQHFLKVHVFPYSRREGTPAYDFPDQIPEHEKEDRSRRMTAAVEAVRAEEAVKMQGRT 410 Query: 414 IEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455 EVL+E G + V++ + +H+ GDI++V + Sbjct: 411 AEVLLET-PLSATLFTGYTKQYLPVLVTAPDHHTGDIVQVTL 451 >gi|163734417|ref|ZP_02141857.1| MiaB-like tRNA modifying enzyme, hypothetical [Roseobacter litoralis Och 149] gi|161392425|gb|EDQ16754.1| MiaB-like tRNA modifying enzyme, hypothetical [Roseobacter litoralis Och 149] Length = 417 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 125/430 (29%), Positives = 199/430 (46%), Gaps = 35/430 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ G +D +V+NTC + +A K S + ++R Sbjct: 8 TLGCRLNAYETEAMKELAAQSGL--------SDAVVVNTCAVTGEAVRKARSTIRKLR-- 57 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR--LPELLERARFGKR 148 +E ++V GC AQ E + P V+ V+G + L G+ Sbjct: 58 -----RENPSARLIVTGCAAQTE-PQTFAAMPEVDAVIGNTEKMQGDTWNALAADFIGES 111 Query: 149 ---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 VD SV + L +DG R R A++ +Q GCD CTFC++PY RG S Sbjct: 112 EAVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRSV 166 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + V+D+ ++L+D G E+ L G ++ +W G L ++ L + L RLR Sbjct: 167 AAGVVIDQIKRLVDKGFNEVVLTGVDLTSW-GADLPAAPKLGDLVMRILRLVPDLPRLRI 225 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ ++ + L+ A LMP+LHL +Q G D ILK M RRH + + R + Sbjct: 226 SSIDSIEVDENLMLAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFAQDARRL 285 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RPD+ +D I GFP ETD F ++ LV + F YS R GTP + M V Sbjct: 286 RPDMTFGADIIAGFPTETDAMFENSLALVQECDLTWLHVFPYSARPGTPAARM-PAVHGQ 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 + ER L+ Q A VG+ VL+E ++GR+ V +++ Sbjct: 345 IIKERASQLRAAGDAQVQRHLSAQVGKTHSVLMES------PVMGRTEQFTEVQVSTPQS 398 Query: 446 NIGDIIKVRI 455 G I+ +R+ Sbjct: 399 E-GTIVSLRV 407 >gi|124514462|gb|EAY55975.1| RNA modification enzyme, MiaB family [Leptospirillum rubarum] Length = 483 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 119/415 (28%), Positives = 204/415 (49%), Gaps = 30/415 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M +G+ + +++A++IV+NTC A ++ L L Sbjct: 41 SLGCPKNLVDTETMIHSLSEKGFRVIPDLEEAEVIVVNTCSFVTDARKESIDTL-----L 95 Query: 91 KNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + ++ KE G ++V GC+ EE+ P V++++ P + ELL + Sbjct: 96 EMAQYKENGKAKILVGTGCLVSRYREELPGLLPEVDMLLSPSEEVSIGELLSSPESKTSL 155 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 T + + RKR A+L I EGCD C+FC +P +RG+++SR+ Sbjct: 156 PSTPLILPSSIP--------FRRKRLTPNHRAYLKISEGCDHTCSFCAIPLSRGLQVSRT 207 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +++E R + D GV E+TL+ Q++ + DGE LL + I + +R Sbjct: 208 RESLLEEVRMMADEGVREVTLIAQDLTRYGSDLEDGEG--LPRLLEEIDRIGRIPWVRLL 265 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P ++D L+K D ++ YL +P Q S +LK MNR ++IDRIR + Sbjct: 266 YAYPTQVTDRLLKVIRDSSTILKYLDIPFQHVSGTVLKRMNRPGNRESTMRLIDRIRRIL 325 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDI + + FIVGFPGET+++F + + F +S GTP +M Q+ + Sbjct: 326 PDITLRTTFIVGFPGETEEEFLEIEEFLKWSRLDHVGVFPFSREEGTPSFDMDGQIPSRL 385 Query: 387 KAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSP 433 K + RL+ +QK + ++ +G+++ VLIE ++ G+L G +P Sbjct: 386 KTQRRKRLMGVQKAISLEK---KKDWLGKVMPVLIEGPSEQSPLILSGRLPGMAP 437 >gi|60683077|ref|YP_213221.1| hypothetical protein BF3627 [Bacteroides fragilis NCTC 9343] gi|60494511|emb|CAH09308.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] Length = 439 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 115/390 (29%), Positives = 188/390 (48%), Gaps = 16/390 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + ADL ++NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADLCIVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K+ VVV GC AQ + ++ + V+VV+G + L + L K Sbjct: 73 ----VKQHPGAFVVVTGCYAQLKPGDVAKIEG-VDVVLGAEQKKDLLQYL--GDLHKHEG 125 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y+ K + +R FL +Q+GCD FC++C +P+ RG + +++ + Sbjct: 126 GEAYTTATK--DIRSFAPSCSRGDRTRFFLKVQDGCDYFCSYCTIPFARGRSRNGTIASL 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++AR+ G EI L G N+ + GK GE TF DL+ +L ++G+ R R ++ P Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDRVEGIERYRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I+ MP+ H+P+QSGSD +L+ M RR+ + I +I+ V PD Sbjct: 240 NLLTDEIIEYVSRSRSFMPHFHIPLQSGSDEVLQLMRRRYGTELFASKIAKIKEVMPDAF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I D IVG GET F + + + Q F YS R GT + V K +R Sbjct: 300 IGVDVIVGTRGETAGYFEKAYEFIHGLDVTQLHVFSYSERPGTQALKIDHVVTPEEKHQR 359 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 CL E+ +F +GQ + VL+EK Sbjct: 360 SQCLLALSDEKTKAFYARYIGQTMPVLMEK 389 >gi|91201962|emb|CAJ75022.1| similar to 2-methylthioadenine synthetase [Candidatus Kuenenia stuttgartiensis] Length = 437 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 122/435 (28%), Positives = 217/435 (49%), Gaps = 29/435 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK- 91 GC N+ D+ M + G +DA+++V+NTC + + ++ + ++ LK Sbjct: 16 GCTKNLVDAEEMLGRIAANGSTICQYPEDAEVLVVNTCGFIDDSKKESIDMIFKMAKLKE 75 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151 N++ K+ ++V GC+AQ E+ P ++ VVG + + ++ L GKR +D Sbjct: 76 NAQCKK-----LIVTGCLAQRYSAELKSEIPEIDDVVGLKDFEKITHLT-----GKRQMD 125 Query: 152 --TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 T Y +D R+ + Y ++L I +GCD CT+C +P RG +SRS+ Sbjct: 126 NSTIYQGDDWRNRIRLTPKHY-------SYLRISDGCDNRCTYCAIPGIRGNFMSRSIEN 178 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +++E+R++ GV EI ++ Q+ ++ GLD K LL ++ I+G+ +R + Sbjct: 179 ILEESRQMASEGVKEINIISQDTTSY---GLDIYGKQMLHVLLEKIAAIEGIQWIRLLYT 235 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 HP LI + + + Y+ LP+Q +D IL M R T +I+ +R Sbjct: 236 HPGHFYPELINTINEHETICKYIDLPIQHINDTILGKMGRNTTRKSIETLINNLRRSIRS 295 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I + + IVGFPGETD+ ++ ++ + K + + F YS TP + +QV + VK Sbjct: 296 IVLRTSVIVGFPGETDEQYQELLEFIKKTKFERLGVFAYSKEENTPAAKFKKQVGKKVKQ 355 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQ-SVVLNSK 443 ERL + RE N +G+ V++++ G L+GR+ P + V +N K Sbjct: 356 ERLNEIMLAQREIVWENNKNLIGKKASVIVDEKEVVSGMLIGRTSGDAPEVDGKVFINDK 415 Query: 444 NHNIGDIIKVRITDV 458 +G+I ++ I++V Sbjct: 416 QIKVGEIRELVISNV 430 >gi|92096943|gb|AAI14872.1| CDKAL1 protein [Bos taurus] Length = 416 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 109/376 (28%), Positives = 185/376 (49%), Gaps = 33/376 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 63 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 119 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K +V+AGCV QA+ + + ++G Q R+ E++E Sbjct: 120 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V +D +RL + +D RK + ++I GC CT+C + RG Sbjct: 171 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257 S + ++VD A++ GVCEI L ++ A+ G+ + + LL+ L E+ Sbjct: 230 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIGS---SLPALLWKLVEVIPEGA 285 Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G+ Y H +M+ L + +LH+PVQS SD +L M R + + Sbjct: 286 MLRLGMTNPPYILEHLEEMAKILHHPR-----VYAFLHIPVQSASDTVLMEMKREYCVAD 340 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +++++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ PR GTP Sbjct: 341 FKRVVDFLKDKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTP 400 Query: 375 GSNMLEQVDENVKAER 390 + M EQV VK ++ Sbjct: 401 AAKM-EQVPAQVKKKK 415 >gi|117924283|ref|YP_864900.1| MiaB-like tRNA modifying enzyme [Magnetococcus sp. MC-1] gi|117608039|gb|ABK43494.1| MiaB-like tRNA modifying enzyme [Magnetococcus sp. MC-1] Length = 467 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 119/461 (25%), Positives = 221/461 (47%), Gaps = 48/461 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + + GC++N ++ M+ GY + + A+++++NTC + ++ + + Sbjct: 9 KRIAIINMGCRVNQFEGAAMQAEAAQMGYVSATADETAEVVIVNTCSVTAQSDSQARKQI 68 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE---LLE 141 RI +E ++V GC AQ ++L P V +V+G Q + + +LE Sbjct: 69 RRI-------ARENPHAQILVTGCYAQ-RNPQLLAELPGVALVLGNQEKRGIAKELAILE 120 Query: 142 RARFGKRVVD------------------TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183 + + + ++E +V + + AF+ +Q Sbjct: 121 AKPLAQPATQQVAPMPRTPLRQSGLEPLAEEAPLPRWEEGPLVAADAFKGQA-RAFVQVQ 179 Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243 GCDK CTFCV+P RG S+S V+ +A+ + G E+ L G ++ ++ G+ G+ Sbjct: 180 NGCDKRCTFCVIPALRGPSRSQSPQWVMAQAQSFLQAGYQELVLTGIDLGSY-GREQTGQ 238 Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 + + L+ L + GL RLR ++ P DM LI G L P+LHL +QSG D++L Sbjct: 239 GWSLARLVEQLLSLDGLARLRLSSIDPMDMEPALIALMGRAPKLCPHLHLSMQSGDDQVL 298 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 K M+R T + + ++R+VRP++ + +D IVGFP E++ F + D+V ++ + Sbjct: 299 KRMHRGSTRQALLERVAQLRAVRPELVLGADLIVGFPTESEAAFEQSCDMVRRLEISLLH 358 Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII--------- 414 F+YS R TP + + + +V+ R+ K R +Q++ V Q + Sbjct: 359 IFRYSARPDTPAAAIPRRF--HVEDTRI-----KARAKQLAMVGGAVWQQVAQRRVGCHD 411 Query: 415 EVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455 VL+E+ +G+L+G++ VV+ + G ++ V I Sbjct: 412 RVLVEQ-SDAQGRLLGKNDSFFDVVVENTPATAGTLLPVEI 451 >gi|225850050|ref|YP_002730284.1| hypothetical protein PERMA_0494 [Persephonella marina EX-H1] gi|225646246|gb|ACO04432.1| conserved hypothetical protein [Persephonella marina EX-H1] Length = 432 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 127/459 (27%), Positives = 227/459 (49%), Gaps = 53/459 (11%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S GC N+ D+ + + + V+ ++DA++I++NTC ++A E+ + + Sbjct: 5 VISLGCPKNLVDTELILGRLKTDKVQIVSDLNDAEVILVNTCGFIDEAKEESVNTI---- 60 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------R 142 L+ +R+KE G+ +VV GC+ + +E+ + P V++ + + +PE L Sbjct: 61 -LEVARLKENGNKKIVVTGCLVERYKKELEKEIPEVDMFIDLKEELLIPEKLGIKVDNFS 119 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + KR++ T TA+L I EGCD C FC +P RG Sbjct: 120 SPYQKRLLTTPKH---------------------TAYLKISEGCDHTCGFCAIPSIRGKH 158 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR++ +V+EA++L D GV E+ ++ Q+ ++ G + G K +L+ L +I+G+ Sbjct: 159 RSRTIEDIVEEAKRLADLGVKELNIVSQD-TSYYGTDIYG-KPMLWELISRLEKIEGVRW 216 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R +P +++ IK D + ++ Y +P+Q DRILK M R + +I++ Sbjct: 217 IRLYYLYPTTVTEDFIKRMADSEKVVKYFEMPIQHTEDRILKDMMRGYRKSRIEKILEWK 276 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQ 381 P+ A+ S IVGFP ET+ DF + D + + + FKYS GTP + + Sbjct: 277 DRYIPEAAVRSAVIVGFPTETERDFESMKDFIKQAKFDWLGVFKYSHEEGTPAYTKYRDS 336 Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQS 437 + E K R + LQ+ + E++ N +G+ IEV+++ +E L VGR+ +S Sbjct: 337 IPEEEKIRRKNEITQLQEGITEEK---NRDLIGKEIEVIVDGFSEEWETLPVGRT--YRS 391 Query: 438 V--------VLNSKNHNIGDIIKVRITDVKIS-TLYGEL 467 + + +GD K++I D+ S L GE+ Sbjct: 392 AFEIDGIVYIETERPVKVGDFAKLKIKDLADSYDLVGEI 430 >gi|315608055|ref|ZP_07883048.1| 2-methylthioadenine synthetase [Prevotella buccae ATCC 33574] gi|315250524|gb|EFU30520.1| 2-methylthioadenine synthetase [Prevotella buccae ATCC 33574] Length = 450 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 116/397 (29%), Positives = 188/397 (47%), Gaps = 17/397 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N ++ + G + AD+ ++NTC + E A K + R+ Sbjct: 18 GCKLNFSETSTFGKLLSDIGVVAAQKGERADICLINTCSVTEVADHKCRQAIHRM----- 72 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---KRV 149 ++E VVV GC AQ E E++ R V++V+G L + L A G + Sbjct: 73 --VRENPGAFVVVTGCYAQLESEKVSRIDG-VDLVLGSNEKADLIQYLNDAFVGGVRQEA 129 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + +SV+ K + +R FL +Q+GC+ FCT+C +PY RG + S++ Sbjct: 130 LHRHHSVKTK--DIKSFQPSCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFSRNPSIAS 187 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 +V++AR+ G EI L G N+ + + +F DL+ +L E++G+ R R ++ Sbjct: 188 LVEQAREAALEGGREIVLTGVNIGDFGATTHE----SFLDLVKALDEVEGIERFRISSLE 243 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P SD L++ MP+ H+P+QSGSD +LK M+RR+ + I+ I+ PD Sbjct: 244 PDLCSDELVEYCSISRAFMPHFHIPLQSGSDEVLKLMHRRYDRALFAHKINLIKEKMPDA 303 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 I D +VG GE + F D ++ + Q F YS R GT ++ VD+ K + Sbjct: 304 FIGVDVMVGCRGEKPEYFEDCYDFLESLPVTQLHVFPYSERPGTSALSIPYVVDDKEKRQ 363 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 R+ L + F +G VL EK K K Sbjct: 364 RVKRLLDMSDRKTEEFYAKYIGTESVVLFEKAAKGKA 400 >gi|288925016|ref|ZP_06418952.1| 2-methylthioadenine synthetase [Prevotella buccae D17] gi|288338206|gb|EFC76556.1| 2-methylthioadenine synthetase [Prevotella buccae D17] Length = 450 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 116/397 (29%), Positives = 187/397 (47%), Gaps = 17/397 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N ++ + G + AD+ ++NTC + E A K + R+ Sbjct: 18 GCKLNFSETSTFGKLLSDIGVVAAQKGERADICLINTCSVTEVADHKCRQVIHRM----- 72 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---KRV 149 ++E VVV GC AQ E E++ R V++V+G L + L A G + Sbjct: 73 --VRENPGAFVVVTGCYAQLESEKVSRIDG-VDLVLGSNEKADLIQYLNDAFVGGVRQEA 129 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + +SV+ K + +R FL +Q+GC FCT+C +PY RG + S++ Sbjct: 130 LHRHHSVKTK--DIKSFQPSCSRGNRTRYFLKVQDGCSYFCTYCTIPYARGFSRNPSIAS 187 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 +V++AR+ G EI L G N+ + + +F DL+ +L E++G+ R R ++ Sbjct: 188 LVEQAREAALEGGREIVLTGVNIGDFGATTHE----SFLDLVKALDEVEGIERFRISSLE 243 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P SD L++ MP+ H+P+QSGSD +LK M+RR+ + I+ I+ PD Sbjct: 244 PDLCSDELVEYCSISRAFMPHFHIPLQSGSDEVLKLMHRRYDRALFAHKINLIKEKMPDA 303 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 I D +VG GE + F D ++ + Q F YS R GT ++ VD+ K + Sbjct: 304 FIGVDVMVGCRGEKPEYFEDCYDFLESLPVTQLHVFPYSERPGTSALSIPYVVDDKEKRQ 363 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 R+ L + F +G VL EK K K Sbjct: 364 RVKRLLDMSDRKTEEFYAKYIGTESVVLFEKAAKGKA 400 >gi|52840922|ref|YP_094721.1| ribosomal protein S12 methylthiotransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81378010|sp|Q5ZXP6|RIMO_LEGPH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|52628033|gb|AAU26774.1| Fe-S oxidoreductase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 435 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 134/462 (29%), Positives = 218/462 (47%), Gaps = 59/462 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ +QGYE V + DA ++V+NTC + A ++ + + Sbjct: 9 SLGCPKALVDSERIITQLKAQGYELVPTYQDAGVVVINTCGFIDSAVQE------SLDTI 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K + + G V+V GC+ A+ + I P V + G Y + VV Sbjct: 63 KEAMAENGR---VIVTGCLG-AKADVIKNACPDVLHISGAHAY-------------EEVV 105 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + D F +L I G A+L I EGC++ CTFC++P RG S Sbjct: 106 NAVHQYLPPPADPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKLQSYP 164 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 ++Q++ EA+KL GV E+ ++ Q+ +A W+GK ++ F DL L Sbjct: 165 MAQILTEAKKLKQAGVKELLVISQDTSAYGVDTRYQQVEWQGKTVNTR---FYDLCEQLG 221 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 E+ VRL Y +P D ++ D +++PYL +P+Q + RILK+M R ++ Sbjct: 222 ELGIWVRLHYVYPYPH--VDDIVPLMRD-GLILPYLDIPLQHANSRILKAMKRPASSENT 278 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I R + PDI + S FIVGFPGET+++F + + + + FKYSP G Sbjct: 279 LLRIASWREICPDITLRSTFIVGFPGETEEEFSELLAFLKEAQLDRVGCFKYSPVEGAKA 338 Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 +++ V E++K E R + +Q ++ ++ +G VLI++ + +++ RS Sbjct: 339 NDLDNPVSEDIKEERYHRFMQVQAEISRNKLKNK---IGSTQTVLIDEINDD--QIIARS 393 Query: 433 ----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 P + +V K I G +V ITD LY LV Sbjct: 394 KSDAPEIDGLVYLPKTSGITVGSFAEVVITDSDDYDLYASLV 435 >gi|56695195|ref|YP_165541.1| MiaB-like tRNA modifying enzyme [Ruegeria pomeroyi DSS-3] gi|56676932|gb|AAV93598.1| MiaB-like tRNA modifying enzyme [Ruegeria pomeroyi DSS-3] Length = 418 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 113/366 (30%), Positives = 179/366 (48%), Gaps = 29/366 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ G +D+A +++NTC + +A K + R+R Sbjct: 8 TLGCRLNAYETEAMKELSAQAG------LDNA--VIVNTCAVTAEAVRKARQEIRRLR-- 57 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFGKR 148 +E ++V GC AQ E E + V+ V+G R PE + A F Sbjct: 58 -----RENPTARLIVTGCAAQTEPETFTAMAE-VDAVIGNTEKMR-PETWKSMTADFIGE 110 Query: 149 V----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 VD SV + L +DG R R A++ +Q GCD CTFC++PY RG S Sbjct: 111 TEAVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRS 165 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 VVD+ ++L+D G E+ L G ++ +W G L + ++ L + L RLR Sbjct: 166 VPAGVVVDQIKRLVDRGYNEVVLTGVDLTSW-GADLPAQPKLGDLVMRILRLVPDLPRLR 224 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ ++ + L++ LMP+LHL +Q G D ILK M RRH + + + R Sbjct: 225 ISSIDSIEVDENLMQGIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFAEEARR 284 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +RP++ +D I GFP ET+ F ++ LVD F YS R GTP + + QV+ Sbjct: 285 LRPEMTFGADIIAGFPTETEAHFENSLKLVDDCHLTWLHVFPYSRREGTPAAKIPSQVNG 344 Query: 385 NVKAER 390 + ER Sbjct: 345 KIIKER 350 >gi|289524260|ref|ZP_06441114.1| MiaB tRNA modifying enzyme-like protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502916|gb|EFD24080.1| MiaB tRNA modifying enzyme-like protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 435 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 119/451 (26%), Positives = 212/451 (47%), Gaps = 27/451 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R F+ S GC N DS ++ S+G+ + AD+I++NTC A ++ + Sbjct: 3 ERVFIVSLGCAKNQVDSEKLAGAMTSKGFGFAEDFESADIILVNTCAFIGPAVKESIDVI 62 Query: 85 GRIRNLKN-SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + LK ++K+ G V GC+ G+++ R P V++ + + + L Sbjct: 63 LHLEELKGLGKVKKIG-----VLGCLLNRYGDDLKREFPTVDIWARSEEWEHVLSCL--- 114 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 V DT +S + G + +L I EGC+ C++C +P RG Sbjct: 115 ----GVNDTSFSPCSR--------GFIPETTTWSRYLKITEGCNNCCSYCTIPSIRGHLR 162 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + ++++EA L+ G EI L+GQ++ A+ G DG L + + + Sbjct: 163 SRPVDEILEEAENLVLQGAKEICLVGQDLTAY-GMDWDGSSHLVELLDLLEKHVPDGMWI 221 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R HP +++ ++ ++ YL +P+Q D IL MNR T + R+I R Sbjct: 222 RPLYLHPMRVNEKFLERIASYKNVLRYLDIPIQHVDDEILSCMNRNVTESDLRRIFSYAR 281 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PD A+ + IVGFPGE + F+ + ++ + + +F YSP GT + + +QV Sbjct: 282 KIDPDFALRTTIIVGFPGEDNVKFKKVLRFLEDMEIDRVGAFLYSPEEGTKAAGIKKQVS 341 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVL 440 + VK +RL L + + +S + +G+ ++V++E+ E G+ +P + V+ Sbjct: 342 DEVKRKRLDMLMELQADISLSRQERFLGRRLKVIVEERNYEDCVLGRSFREAPEVDGVIA 401 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELVV 469 K+ GD + VRI V + E+VV Sbjct: 402 IKGVKDVPCGDFLNVRINAVTEHDMEAEVVV 432 >gi|186475738|ref|YP_001857208.1| ribosomal protein S12 methylthiotransferase [Burkholderia phymatum STM815] gi|238065310|sp|B2JG80|RIMO_BURP8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|184192197|gb|ACC70162.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia phymatum STM815] Length = 463 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 132/483 (27%), Positives = 219/483 (45%), Gaps = 67/483 (13%) Query: 21 CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 + P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 12 ALTPKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQES 70 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRL 136 +G N +N + V+V GC+ A G ++ P V V GP + Sbjct: 71 LDAIGEALN-ENGK--------VIVTGCLGAKQSASGSNLIEEVHPKVLAVTGPHAVGEV 121 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 + + + K D F L G R A+L I EGC+ CTFC++P Sbjct: 122 MQAV-HSHLPKP--------HDPFVDLVPAAGVKLTPRHY-AYLKISEGCNHRCTFCIIP 171 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKC 245 RG +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K Sbjct: 172 SMRGDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KT 228 Query: 246 TFSDLLYSLSEIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPV 295 +DL+ +L E+ VRL Y +P M++ K H ++PYL +P Sbjct: 229 RMTDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGSFKGH-----VLPYLDVPF 283 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMD 352 Q +LK M R A ++++R+R+ R PD+ I S FI GFPGET + F +D Sbjct: 284 QHAHPEVLKRMKRPANA---EKVLERVRAWREICPDLTIRSTFIAGFPGETQEQFETLLD 340 Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412 + + + F YSP G + + + + V+ R + + VG+ Sbjct: 341 FIREAELDRVGCFAYSPVEGATANELDGALPDEVREARRARFMEVAEQVSAKRMARKVGK 400 Query: 413 IIEVLIEKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLY 464 ++VL+++ + G+ +P + VV SK + +GD + V+IT L+ Sbjct: 401 TLKVLVDEINPDGGIGRTAADAPEIDGVVYIAPATKASKRYKVGDFVSVKITGADGHDLW 460 Query: 465 GEL 467 GE+ Sbjct: 461 GEV 463 >gi|218128607|ref|ZP_03457411.1| hypothetical protein BACEGG_00177 [Bacteroides eggerthii DSM 20697] gi|317475589|ref|ZP_07934851.1| MiaB-like tRNA modifying enzyme [Bacteroides eggerthii 1_2_48FAA] gi|217989209|gb|EEC55523.1| hypothetical protein BACEGG_00177 [Bacteroides eggerthii DSM 20697] gi|316908293|gb|EFV29985.1| MiaB-like tRNA modifying enzyme [Bacteroides eggerthii 1_2_48FAA] Length = 443 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 114/390 (29%), Positives = 189/390 (48%), Gaps = 16/390 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K+ VVV GC AQ + +++ + V+VV+G + L L K Sbjct: 73 ----VKQHPGAFVVVTGCYAQLK-PDVVAKIEGVDVVLGAEQKKDLLRYL--GDLQKHET 125 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y+ + + +R FL +Q+GCD +C++C +P+ RG + S++ + Sbjct: 126 GEAYT--SALKDIRSFAPSCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGSVASL 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++AR+ G EI L G N+ + GK GE TF DL+ +L E++G+ R R ++ P Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--TFFDLVKALDEVEGIERYRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I+ MP+ H+P+QSGSD +LK M RR+ + + +I+ V PD Sbjct: 240 NLLTDEIIEFVSRSKRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKVKKIKEVMPDAF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I D IVG GET++ F + + Q F YS R GT + V K R Sbjct: 300 IGVDVIVGTRGETEEYFEQAYRFIQGLDVTQLHVFSYSERPGTQALKIEHVVSSEEKHRR 359 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 L + E+ SF +GQ + VL+E+ Sbjct: 360 SQLLLELSEEKTRSFYARHIGQTMPVLLER 389 >gi|330837149|ref|YP_004411790.1| Ribosomal protein S12 methylthiotransferase rimO [Spirochaeta coccoides DSM 17374] gi|329749052|gb|AEC02408.1| Ribosomal protein S12 methylthiotransferase rimO [Spirochaeta coccoides DSM 17374] Length = 458 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 122/451 (27%), Positives = 220/451 (48%), Gaps = 40/451 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI----REKAAEKV 80 ++ ++++ GC N D+ M S G+ RV+ +A+L+V+NTC R+++ + Sbjct: 12 KKVYIENLGCAKNQVDAETMLGYLESDGWSRVDDAANAELVVVNTCSFIEAARKESIDAF 71 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 +S R + K VV+ GC+AQ + + P + + G + ++ + Sbjct: 72 FSLKARCPDAK-----------VVMTGCLAQRYADSLAADLPEADGIFGNRDLTQVLPFV 120 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G R V E + +D GY ++++ I EGC+ C FC +P R Sbjct: 121 RSVLDGARPVRIPDHASQGHEFVERMDRLGYPG----SSYVKISEGCNHTCAFCAIPGIR 176 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258 G +SRS+ V+ E R LI +GV EI L+ Q++ ++ G+D G K F DL+ S++ + Sbjct: 177 GPLVSRSMEDVLAETRSLISDGVREINLIAQDLASF---GVDNGGKSRFCDLVESIAAVP 233 Query: 259 G--LVRLRY--TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G VRL Y ++PR ++D + + G + +PY LP Q + +L++M R T Sbjct: 234 GNFFVRLLYIYPDAYPRRLTDIIAASEGKI---LPYFDLPFQHAAVPVLRAMGRAGTPES 290 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 Y +ID IRS P S F++GFPGE +F +D + SF YS GT Sbjct: 291 YLALIDSIRSRIPQAVFRSTFMLGFPGENRAEFDVLLDFLKDARLDWVGSFIYSREEGTS 350 Query: 375 GSNMLEQVDENVKAERLLCLQKKL--REQQVSFN--DACVGQIIEVLIEKHGKEK----G 426 +M + ++ Q++L +++++F + VG + +VL+E+ + + G Sbjct: 351 AWDMRGETAHRKAVKQAALWQQELIALQEEITFTRLERFVGTVHDVLLEEKVEGEDLYIG 410 Query: 427 KLVGRSPWLQSV-VLNSKNHNIGDIIKVRIT 456 ++ ++P + + V+ ++ G ++K IT Sbjct: 411 RMYAQAPDVDGLTVVMGRDMVPGTMVKCGIT 441 >gi|332292576|ref|YP_004431185.1| MiaB-like tRNA modifying enzyme YliG [Krokinobacter diaphorus 4H-3-7-5] gi|332170662|gb|AEE19917.1| MiaB-like tRNA modifying enzyme YliG [Krokinobacter diaphorus 4H-3-7-5] Length = 477 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 134/459 (29%), Positives = 223/459 (48%), Gaps = 55/459 (11%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-----DADLIVLNTCHIREKAAEKVYSF 83 V + GC NVYDS + G + N MD + +++V+NTC + A E+ + Sbjct: 40 VVTLGCSKNVYDSEVL------MGQLKANEMDVAHEEEGNIVVINTCGFIDNAKEESVNT 93 Query: 84 LGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + L+ + KE G++ V V GC+++ ++ + P V+ G LP LL Sbjct: 94 I-----LEYVKQKEEGEVDKVFVTGCLSERYKPDLQKEIPDVDQYFGTT---ELPGLL-- 143 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + DY E ER++ Y A+L I EGCD+ C+FC +P RG Sbjct: 144 -----KALGADYKHELIGERITTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGKH 191 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL- 260 S+S+ +V EA+KL NGV E+ L+ Q++ + GLD +K ++LL +L +++G+ Sbjct: 192 KSKSIEHLVIEAKKLAANGVTELILIAQDLTYY---GLDLYKKRNLAELLENLVQVEGIE 248 Query: 261 -VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +RL Y + P D+ D + + + Y+ +P+Q +D ILKSM R T + Sbjct: 249 WIRLHYAFPSGFPVDVLDVMNREPK----VCNYIDIPLQHIADHILKSMRRGTTMEKTNA 304 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++DR R P + I + IVG+PGET++DF+ V + + F YS T N Sbjct: 305 LLDRFRESVPGMTIRTTLIVGYPGETEEDFQLMKQWVKDQRFERLGCFTYSHEENTHAFN 364 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SP 433 + + V E VK +R + + + N +G+ ++++++ KE +GR SP Sbjct: 365 LEDDVPEEVKMDRANQIMEIQSQISWELNQQKIGKEFKIVVDR--KEGNYFIGRTEFDSP 422 Query: 434 WLQSVVLNSKNH---NIGDIIKVRITDVKISTLYGELVV 469 + + VL GD V IT+ + LY E +V Sbjct: 423 DVDNEVLVDATKFYLKTGDYAMVTITEAEDFDLYAEPLV 461 >gi|294101399|ref|YP_003553257.1| MiaB-like tRNA modifying enzyme YliG [Aminobacterium colombiense DSM 12261] gi|293616379|gb|ADE56533.1| MiaB-like tRNA modifying enzyme YliG [Aminobacterium colombiense DSM 12261] Length = 429 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 122/450 (27%), Positives = 205/450 (45%), Gaps = 31/450 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++ S GC N DS + M + G+ V+S+D+A + ++NTC + A E+ + Sbjct: 3 IYIISLGCAKNSVDSENLIGMLRAAGFRVVDSIDEAQVAIVNTCGFIQPAVEENVDII-- 60 Query: 87 IRNLKNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 L R+KE G L + V GC+ GEE+ + P V++ +A Sbjct: 61 ---LDLERLKEEGRLQKIGVVGCLVNRYGEELKKELPSVDI-------------WSQAEE 104 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + VV + ++R G R + +L + EGCD FC++C +P RG S Sbjct: 105 WESVVRQLGAKPSNWQR-----GMLPGTRPWSRYLKVGEGCDSFCSYCTIPSIRGWARSY 159 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + + EA +L++ G EI L+GQ++ + G+ + G+ + L + + V LR Sbjct: 160 PIEVLTSEASRLVEEGAREICLVGQDLTVY-GRDVYGKPSLIALLDSLTASLPQEVWLRL 218 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 HP + + I ++PYL +P+Q +L+ MNR+ R + IR Sbjct: 219 LYLHPARVDERFIDYISSSKSVLPYLDIPIQHVEGDLLRRMNRKENEESLRTLFGYIRKK 278 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P A+ + FIVGFPGET++ F +D + + + +F Y GT + + Q+ Sbjct: 279 NPLFALRTTFIVGFPGETEEQFEKVLDFAEDMEIDRVGAFAYCAEEGTIAATLPGQLSSK 338 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV-- 439 +K ER L + E + VG+ + VL+E E GRS P + +V Sbjct: 339 IKEERYNRLMELQSEISLRRQSLFVGRELTVLVETIDNEDNIAWGRSYRDAPEVDGLVGI 398 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + + G +KV+IT+ + L G VV Sbjct: 399 MEGAHLKEGAFVKVKITEAEEYDLLGVEVV 428 >gi|198423331|ref|XP_002121617.1| PREDICTED: similar to CDK5 regulatory subunit associated protein 1-like 1 [Ciona intestinalis] Length = 516 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 131/477 (27%), Positives = 224/477 (46%), Gaps = 42/477 (8%) Query: 6 KLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADL 64 K++GV I Q FVK++GC N DS M S GY V + D+ADL Sbjct: 45 KVLGVELEDDTIQSNIPATQTIFVKTWGCTHNSSDSEYMAGQLASYGYNVVTENGDNADL 104 Query: 65 IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV 124 +LN+C ++ A + + + + ++L VV+AGCV+Q ++S I Sbjct: 105 WLLNSCTVKNPAEDHFRNMISKAQSLNKQ---------VVLAGCVSQGAP----KQSYIQ 151 Query: 125 NV-VVGPQTYYRLPELLERARFGKRVVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLT 181 + ++G Q R+ E++E G V E+ K S+ D R+ ++ Sbjct: 152 GLSIIGVQQIDRVVEVVEETLKGNTVRLLKQKKENGRKIGGASL-DLPKIRRNPFIEIIS 210 Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241 I GC CT+C + RG S ++++V A + GV EI L ++ A+ G+ + Sbjct: 211 INTGCLNSCTYCKTKHARGNLGSYPVAEIVQRAIQSFGEGVVEIWLTSEDTGAY-GRDIG 269 Query: 242 GEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293 + +LL+ L ++ G+ Y H +M L + + +LH+ Sbjct: 270 ---TSLPELLWELVKVIPVGCMLRVGMTNPPYILDHLEEMGKILNHPN-----VYSFLHV 321 Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 PVQSGSD+ L M R +TA ++ ++D +R+ P I+I++D I GFP ETD+DF TM L Sbjct: 322 PVQSGSDQTLHEMRREYTASDFELVVDTLRASVPGISIATDIICGFPTETDEDFEDTMTL 381 Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND--ACVG 411 +K + F ++ PR GTP + M + + +K K+L E S+ +G Sbjct: 382 CEKYKFPSLFINQFFPRPGTPAARMPQIHRQEIKKR-----TKRLSELFRSYEPYGHQLG 436 Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +I +VL+ + ++ VG + + + V++ G + +V I + L G+ + Sbjct: 437 KIQKVLVTEIAHDQIHYVGHNKYYEQVLIPMDEDLTGKMFEVEIVETGKHFLKGKRI 493 >gi|296284753|ref|ZP_06862751.1| hypothetical protein CbatJ_14083 [Citromicrobium bathyomarinum JL354] Length = 391 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 122/431 (28%), Positives = 193/431 (44%), Gaps = 51/431 (11%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S GC++N +S R+ + +Q DL+V+N+C + +A + R R Sbjct: 6 VISLGCRLNHAESERIAALVEAQ----------PDLVVVNSCSVTREAVRHTRQAIRRAR 55 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 + ++V GC A+ E E + + V +A+ R Sbjct: 56 KAHPA-------ARLLVTGCAAETEREALGAMDEVDGFVA------------NQAKLDAR 96 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++V + R+++ R++G AF+ +Q GCD CTFC +P RG S ++ Sbjct: 97 ----SWNVPEP--RVAL------RQQGTRAFVGVQNGCDHACTFCSIPAGRGTSRSDEIA 144 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V+ + G E+ L G ++ +W G L GE + + L+E L RLR ++ Sbjct: 145 TVLRAVEARLIEGTQEVVLTGVDLTSW-GHDLPGEPRLGALVSAILNEFPQLPRLRLSSV 203 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++ D L +MP+LHL +Q GSD ILK M RRH + ++ R+++ RP+ Sbjct: 204 DGIEIDDALFDLIAGEPRVMPHLHLSLQHGSDLILKRMKRRHLRGDAVDLVARLKARRPE 263 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 IAI +D I GFP ETD + ++ + G F YSPR GTP + M QVD Sbjct: 264 IAIGADLIAGFPTETDAHHADNLSIIAECGIVHGHIFPYSPRAGTPAARM-PQVDVATIK 322 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL--NSKNHN 446 R L+ +R + + + +GQ VL EK G G +P V L + Sbjct: 323 ARAAELRTAVRRTRDGWLASLIGQRHTVLAEKDGS------GYTPHFARVALPEGTAPGT 376 Query: 447 IGDIIKVRITD 457 I I RI + Sbjct: 377 IASITPTRIIE 387 >gi|307729597|ref|YP_003906821.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1003] gi|307584132|gb|ADN57530.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1003] Length = 463 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 130/466 (27%), Positives = 214/466 (45%), Gaps = 52/466 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ ++GYE + + ADL+V+NTC ++A ++ +G N Sbjct: 21 SLGCPKALVDSEQIITQLRAEGYEISGTYNGADLVVVNTCGFIDEAVQESLDAIGEALN- 79 Query: 91 KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146 +N + V+V GC+ A G ++ P V V GP + L E+++ Sbjct: 80 ENGK--------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGP---HALGEVMQH---- 124 Query: 147 KRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V T D F L G R A+L I EGC+ CTFC++P RG +SR Sbjct: 125 ---VHTHLPKPHDPFVDLVPAAGVKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDLVSR 180 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254 +++V+ EA L +GV E+ ++ Q+ +A W GK L K +DL+ +L Sbjct: 181 PVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPL---KTRMTDLVGAL 237 Query: 255 SEIKG----LVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 E+ VRL Y +P D ++ A ++PYL +P Q +LK M R Sbjct: 238 GELAAQYGAWVRLHYVYPYPSVDEVIPMMAAGPYKGHVLPYLDVPFQHAHPEVLKRMKRP 297 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 A + + + R + PD+ I S FI GFPGET++ F +D + + + F YSP Sbjct: 298 ANAEKVMERVKAWREMCPDLTIRSTFIAGFPGETEEQFETLLDFIREAELDRVGCFAYSP 357 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GK 427 G + + + + V+ ER + + VG+ ++VL+++ + G+ Sbjct: 358 VEGASANELDGALPDEVREERRARFMEVAEQVSAKRIAKKVGKTLKVLVDETNADGGIGR 417 Query: 428 LVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 +P + VV SK + +GD + V+IT L+GE+ Sbjct: 418 TAADAPEIDGVVYIAPAAKASKRYKVGDFVSVKITGADGHDLWGEV 463 >gi|238027205|ref|YP_002911436.1| ribosomal protein S12 methylthiotransferase [Burkholderia glumae BGR1] gi|237876399|gb|ACR28732.1| 2-methylthioadenine synthetase [Burkholderia glumae BGR1] Length = 460 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 133/478 (27%), Positives = 216/478 (45%), Gaps = 66/478 (13%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + S GC + DS ++ ++GYE + D ADL+V+NTC + A ++ +G Sbjct: 10 RIGIVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDDAVQESLDAIG 69 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLE 141 + E G V+V GC+ A G ++ P V V GP + L E+++ Sbjct: 70 EA-------LTENGK--VIVTGCLGAKKSASGAGLIEEVHPKVLAVTGP---HALGEVMQ 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 V D F L + G A+L I EGC+ CTFC++P RG Sbjct: 118 A------VHSHLPKPHDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 170 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 ISR +++V+ EA L +GV E+ ++ Q+ +A W G+ L K ++L Sbjct: 171 LISRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTEL 227 Query: 251 LYSLSEIKG----LVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSGSD 300 + +L E+ VRL Y +P M++ + H ++PYL +P Q Sbjct: 228 VAALGELAAQYGAWVRLHYVYPYPHVDEIIPLMAEGAYRGH-----VLPYLDVPFQHADP 282 Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 +LK M R A +++DR+R R PD+ I S FI GFPGET+ F +D + + Sbjct: 283 DVLKRMRRPANA---EKVLDRVRKWREVCPDLTIRSTFIAGFPGETEAQFETLLDFIREA 339 Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417 + F YSP G + + + + V+ R + E + + +GQ ++VL Sbjct: 340 ELDRVGCFAYSPVEGATANELDGALPDEVREARRARFMEVAEEVSAARIERKIGQTLKVL 399 Query: 418 IEKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 I++ E G+ +P + VV +K + +GD + V IT L+GE+ Sbjct: 400 IDEVNAEGGIGRTAADAPEIDGVVYVEPAPKGAKRYKVGDFVSVAITGADGHDLWGEV 457 >gi|94984483|ref|YP_603847.1| hypothetical protein Dgeo_0375 [Deinococcus geothermalis DSM 11300] gi|123079979|sp|Q1J1F6|RIMO_DEIGD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|94554764|gb|ABF44678.1| SSU ribosomal protein S12P methylthiotransferase [Deinococcus geothermalis DSM 11300] Length = 485 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 136/486 (27%), Positives = 229/486 (47%), Gaps = 71/486 (14%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ F+ S GC + DS R+ ++GYE + +DA +++NTC A E+ S Sbjct: 13 APKVGFI-SLGCPKALVDSERILTQLRAEGYEVAPNYEDAQAVIVNTCGFITPAVEESLS 71 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT------YYR- 135 +G + V+V GC+ + E+IL R P V + G + + R Sbjct: 72 AIGEALDATGK---------VIVTGCLGE-RPEKILERHPKVAAITGSEAVDDVMAHVRE 121 Query: 136 -LP-------ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187 LP LL A G R DT + + Y A++ I EGC+ Sbjct: 122 LLPIELDPFTGLLPVAAPGMRQGDT------LAPSVKLTPRHY-------AYVKIAEGCN 168 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLD 241 C+FC++P RG ++SR V+ EA +LI G E+ ++ Q+ +A+ R Sbjct: 169 HTCSFCIIPKLRGRQVSRDAGAVLYEAYRLIAGGTKELMIISQDTSAYGVDLRHRTSEFQ 228 Query: 242 GE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 GE + DL L E+ VR+ Y +P + + G ++PYL +P+Q S Sbjct: 229 GEQVRAHLIDLAEKLGEMGAWVRMHYVYPYPHVERIVELMSQGK---ILPYLDVPLQHAS 285 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +LK M RR A + I R R + P++ I S FIVGFPGET++DF+ +D +++ Sbjct: 286 PAVLKRM-RRPGAGKQLDTIRRWREICPELVIRSTFIVGFPGETEEDFQLLLDFLEEARL 344 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEV 416 + +F YS + + + E VK ERL + + +++ ++++ VG++++V Sbjct: 345 DRVGAFTYSDVEEADANALDGAIPEEVKQERLARFMEVAQRISREKLAEK---VGRVLDV 401 Query: 417 LIEKHGKEKG-----KLVGRS----PWLQSVVL-----NSKNHNIGDIIKVRITDVKIST 462 +I++ ++G +L+GR+ P + V + IGDI++ RI D Sbjct: 402 IIDEFNDDEGDEPGTRLIGRTKGDAPGIDGQVYLYAGDFAGQVKIGDIVQARIEDSDEYD 461 Query: 463 LYGELV 468 LYGE++ Sbjct: 462 LYGEVI 467 >gi|307297694|ref|ZP_07577500.1| MiaB-like tRNA modifying enzyme YliG [Thermotogales bacterium mesG1.Ag.4.2] gi|306916954|gb|EFN47336.1| MiaB-like tRNA modifying enzyme YliG [Thermotogales bacterium mesG1.Ag.4.2] Length = 434 Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 123/447 (27%), Positives = 202/447 (45%), Gaps = 50/447 (11%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI----REKAAEKVYSFL 84 V S GC N+ D + ++G+E V ADLI+++TC ++++ E+++ F+ Sbjct: 5 VLSLGCSKNIADMDNFMGIMANRGHEIVEDASVADLIIIDTCGFIDDAKKESVEEIFKFI 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 S +E L VV GC+ Q +E+ ++ ++G + + L +L+E Sbjct: 65 --------SLKQENPGLKVVAVGCLVQRYFDELKSEISEIDGLIGVTSPFTLADLIENGE 116 Query: 145 F------------GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 F RVV + YS A++ I +GC++ C F Sbjct: 117 FFYLKEPDGVYDFSSRVVSSKYS----------------------AYVKIGDGCNRNCAF 154 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 C +P +G +SR+ +V E LI GV EI L+ Q+ + GK L+ EK LL Sbjct: 155 CSIPNFKGKSVSRNPDSIVKETLSLIRKGVKEIDLVSQDCTQY-GKDLN-EKTDLKSLLE 212 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L+ I G +R HP + + L+ + L ++ Y +PVQSGS RILK M R + Sbjct: 213 RLNNIDGDFWIRVLYLHPDHVDNELVDSILSLSKVVDYFDIPVQSGSTRILKKMGRIKDS 272 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 R+++ IR P + + ++GFPGE++ F T+D V + + + F YS G Sbjct: 273 DRLRELLFGIRQKAPHAILRTTLLIGFPGESEATFNETLDFVRSVKFDRLGGFVYSNEEG 332 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVG 430 T + E L L ++ GQI+ VL+E+ G G+ Sbjct: 333 TQAFGQKRTIGRKAAKEMLNSLLEEQDTISAGRLSQFKGQIMTVLVEESGSSYSLGRAYN 392 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITD 457 +P + VV+ ++ G +K RITD Sbjct: 393 SAPDVDGVVVLKGHNEDGVFVKARITD 419 >gi|316931775|ref|YP_004106757.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris DX-1] gi|315599489|gb|ADU42024.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris DX-1] Length = 423 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 137/450 (30%), Positives = 207/450 (46%), Gaps = 62/450 (13%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N ++S + G AD IV+N+C + +A + +IR Sbjct: 5 VITFGCRLNAFESELIRREAEGAGL--------ADTIVVNSCAVTNEAVAQARQ---QIR 53 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 LK +R + L++V GC AQ E V+ V+G R K Sbjct: 54 KLKRAR----PEALIIVTGCAAQTEPATFAAMQE-VDRVIGNDDKTRS----HAWHAAKG 104 Query: 149 VVDTDYSVE-DKFERLSIVD------------GGYNRKRGVT-AFLTIQEGCDKFCTFCV 194 +D S D +++++ D GY + G+ F+ +Q GCD CTFC+ Sbjct: 105 ALDAGPSFGLDTEQKIAVADIMAVREMAPHLLDGY--QSGLPRVFVQVQNGCDHRCTFCI 162 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 +PY RG S + VV++ R+L + G EI L G ++ ++ G L G + + L Sbjct: 163 IPYGRGNSRSVPVGAVVEQVRRLAERGHAEIVLTGVDLTSY-GADLPGTPKLGTLVKKVL 221 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 + L RLR ++ + LI A LMP+LHL +Q+G D ILK M RRH + Sbjct: 222 RHVPELQRLRISSIDQVEADRDLIDALATEPRLMPHLHLSLQAGDDLILKRMKRRHARAD 281 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 R +RPDIA+ +D I GFP ETD+ F+ ++DLV++ G F YSPR GTP Sbjct: 282 AIAFCAEARRLRPDIALGADLIAGFPTETDEMFQRSLDLVEECGLTFLHVFPYSPRPGTP 341 Query: 375 GSNMLEQVDENV--------KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 + M Q+D V +A LQ++L DA G VLIE + Sbjct: 342 AARM-PQLDGRVIRDRAARLRAAGEAALQRRL--------DAETGASRAVLIESPTQ--- 389 Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRIT 456 GR+ V ++ GD+ +RIT Sbjct: 390 ---GRTEHFLPVAISGATP--GDVQSLRIT 414 >gi|237755825|ref|ZP_04584424.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237692013|gb|EEP61022.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 430 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 122/443 (27%), Positives = 216/443 (48%), Gaps = 48/443 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ + + ++AD+I++NTC E A E+ + L Sbjct: 10 SLGCPKNLVDTEVLIGKLNQGNISFTANPEEADVILINTCGFIEPAKEESIETI-----L 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--LERARFGKR 148 + ++K+ + ++V GC+ + +E+ + P V+ + + ++P L ++ KR Sbjct: 65 EAVKLKQNSNKKIIVTGCLVERYKQELEKEIPEVDYFIDLKNQSQIPVLFDIKPKENTKR 124 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 ++ T TA+L I EGCD C+FC +P RG S+ + Sbjct: 125 IISTPKH---------------------TAYLKISEGCDHTCSFCAIPNIRGKHRSKPIE 163 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V+EA+ L D GV E+ ++ Q+ ++ G L G+ F +LL L +I G+ +R Sbjct: 164 ALVEEAKYLADLGVKELNIVSQDT-SYYGYDLYGKPMLF-ELLRQLEKIDGIKWIRLYYL 221 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P + + K D + ++ Y+ +P+Q D+ILK M R + + QI+D PD Sbjct: 222 YPSTVDEDFFKFIKDSEKILHYIEMPIQHSEDKILKDMMRGYRKKKLYQILDWKEKYTPD 281 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDENVK 387 +AI S IVG+P ET++DF + + + + + F YS GTP +++ + K Sbjct: 282 MAIRSSVIVGYPMETEEDFESLKNFLQEAQFDWLGVFVYSHEEGTPAYQKHKDKIPKKEK 341 Query: 388 AERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSV----- 438 RL LQ+ + EQ+ N + +G+ ++++I+ +E L +GRS +S Sbjct: 342 IRRLNEISALQEGITEQK---NKSLIGKELDIIIDGFSEEWETLPIGRS--YRSAFEIDG 396 Query: 439 ---VLNSKNHNIGDIIKVRITDV 458 V ++ N+GDIIKVRI D Sbjct: 397 IVYVETTEPVNVGDIIKVRIKDT 419 >gi|255561612|ref|XP_002521816.1| radical sam protein, putative [Ricinus communis] gi|223539029|gb|EEF40626.1| radical sam protein, putative [Ricinus communis] Length = 630 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 124/455 (27%), Positives = 217/455 (47%), Gaps = 42/455 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q ++K++GC N DS M S GY + +D DL ++NTC ++ + + + + Sbjct: 62 QTIYIKTFGCSHNQSDSEYMAGQLSSFGYALTDIPEDGDLWLINTCTVKSPSQSAMDTII 121 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ K +VVAGCV Q G L+ V++V G Q R+ E++E Sbjct: 122 AKGKSAKKP---------LVVAGCVPQ--GSRNLKELEGVSIV-GVQQIDRVVEVVEETL 169 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G V + L +D RK L I GC CT+C + RG S Sbjct: 170 KGHEVRLLTR------KTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGS 223 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEK---CTFSDLLYSLSEIK-- 258 ++ +V R ++ +GV EI L ++ A+ R G++ + S+L S + Sbjct: 224 YTIDSLVGRVRTVVGDGVKEIWLSSEDTGAYGRDIGVNLPRLLNAIVSELPADASTMLRI 283 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ + H +++++ L + +LH+PVQSGSD +L +MNR +T +R + Sbjct: 284 GMTNPPFILEHLKEIAEVLRHP-----CVYSFLHVPVQSGSDNVLNAMNREYTVSNFRTV 338 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +D + + P + I++D I GFPGETDDDF T+ L+++ Q ++ PR GTP + M Sbjct: 339 VDTLTELVPGMQIATDIICGFPGETDDDFAQTVSLINEYKLPQVHISQFYPRPGTPAARM 398 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFN-----DACVGQIIEVLIEKHGKEKGKLVGRSP 433 ++V N+ ++K+ RE F + G++ + I + + LVG + Sbjct: 399 -KKVPSNI-------VKKRSRELTAVFEAFTPYNGMEGRVERIWITEIATDGIHLVGHTK 450 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V++ + +G V+IT V +++GE++ Sbjct: 451 GYVQVLVIAPETMLGTSAIVKITSVGRWSVFGEVI 485 >gi|192360739|ref|YP_001982368.1| MiaB-like tRNA modifying enzyme YliG [Cellvibrio japonicus Ueda107] gi|238065319|sp|B3PGP3|RIMO_CELJU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|190686904|gb|ACE84582.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Cellvibrio japonicus Ueda107] Length = 451 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 130/456 (28%), Positives = 218/456 (47%), Gaps = 45/456 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ +GY V S +DAD++++NTC + A ++ +G N Sbjct: 23 SLGCPKNLVDSERILTQLRMEGYNIVPSYNDADMVIVNTCGFIDSAVQESLGAIGEALN- 81 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 E G +LV GC+ A+ +EI++ P V + G Y E+L A+ + + Sbjct: 82 ------ENGKVLV--TGCLG-AKKDEIIQVHPNVLGITGAHAYE---EVL--AQVHEHLP 127 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + + F L G R A+L I EGC+ C+FC++P RG +SR + QV Sbjct: 128 PS--QTHNPFTDLVPPQGIKLTPRHY-AYLKISEGCNHSCSFCIIPDMRGKLVSRPIGQV 184 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA +L+ GV E+ ++ Q+ +A W G+ L K L +L E+ Sbjct: 185 MGEAERLVKAGVKELLVISQDTSAYGVDIKHRTDFWDGRPL---KTDMYQLAAALGELGV 241 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + + A G + +PYL +P Q S +L+ M R + + I Sbjct: 242 WVRLHYVYPYPHVDNVIPLMAQGKV---LPYLDIPFQHASPTLLRKMRRPGQVEKTLERI 298 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R P++ + S FIVGFPGET+ DF + +++ + F+YSP G + + Sbjct: 299 KNWREQVPNLTLRSTFIVGFPGETEADFEELLGFLEEAQLDRVGCFQYSPVEGAKANELP 358 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 + V + +K +R + LQ+++ +++ VGQ + VLI++ E G+ +P Sbjct: 359 DPVLDEIKQARYDRFMQLQQRISTERLKQK---VGQTLPVLIDEVDDEGAIGRSYADAPE 415 Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + V + + + GDI+ V+I L+G V Sbjct: 416 IDGCVYLNGDIQVKPGDIVNVQIEHSDEYDLWGTRV 451 >gi|148360663|ref|YP_001251870.1| 2-methylthioadenine synthetase; MiaB [Legionella pneumophila str. Corby] gi|296106272|ref|YP_003617972.1| Fe-S oxidoreductase [Legionella pneumophila 2300/99 Alcoy] gi|238066350|sp|A5IGM4|RIMO_LEGPC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|148282436|gb|ABQ56524.1| 2-methylthioadenine synthetase; MiaB [Legionella pneumophila str. Corby] gi|295648173|gb|ADG24020.1| Fe-S oxidoreductase [Legionella pneumophila 2300/99 Alcoy] Length = 439 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 133/461 (28%), Positives = 220/461 (47%), Gaps = 59/461 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ +QGYE V + +DA ++V+NTC + A ++ + + Sbjct: 9 SLGCPKALVDSERIITQLKAQGYELVPTYEDAGVVVINTCGFIDSAVQE------SLDTI 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K + + G V+V GC+ A+ + I P V + G Y + VV Sbjct: 63 KEAMAENGR---VIVTGCLG-AKADVIKNACPDVLHISGAHAY-------------EEVV 105 Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + D F +L I G A+L I EGC++ CTFC++P RG S Sbjct: 106 NAVHQHLPPPADPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKLQSYP 164 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 ++Q++ EA+KL GV E+ ++ Q+ +A W+GK ++ F DL L Sbjct: 165 MAQILTEAKKLKQAGVKELLVISQDTSAYGVDTRYQQVEWQGKTVNTR---FYDLCEQLG 221 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 E+ VRL Y +P D ++ D +++PYL +P+Q + RILK+M R ++ Sbjct: 222 ELGIWVRLHYVYPYPH--VDDIVPLMRD-GLILPYLDIPLQHANSRILKAMKRPASSENT 278 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I R + PDI + S FIVGFPGET+++F + + + + FKYSP G Sbjct: 279 LLRIASWREICPDITLRSTFIVGFPGETEEEFSELLAFLKEAQLDRVGCFKYSPVEGAKA 338 Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 +++ V E++K E R + +Q ++ ++ +G VLI++ ++ +++ RS Sbjct: 339 NDLDNPVSEDIKEERYHRFMQVQAEISRNKLKNK---IGSTQTVLIDEITED--QIIARS 393 Query: 433 ----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467 P + +V K I G + ITD LYG+L Sbjct: 394 KSDAPEIDGLVYLPKISGITVGSFAEAMITDSDDYDLYGDL 434 >gi|288560943|ref|YP_003424429.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1] gi|288543653|gb|ADC47537.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1] Length = 428 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 129/450 (28%), Positives = 230/450 (51%), Gaps = 34/450 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F+++YGC N DS M + V++ ++AD I++NTC+++ KV + Sbjct: 5 KVFIETYGCTFNQADSEIMAGILNENNIGLVSTEEEADAIIVNTCYVKLPTESKV---IN 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI+NL+ K+ D ++V GC+ + + +++ P + + GP + ++++ Sbjct: 62 RIKNLQ----KQYPDKKIIVGGCMVEVDPKKLEAIGPNCSWI-GPHQLNKTADVVKSTIG 116 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G+ V + +S E K I RK + I EGC CT+C + RG S Sbjct: 117 GEIVREFGFSDEPKVCVPKI------RKDPYIHVIQICEGCLGACTYCCTRFARGHLNSY 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +V+EAR I++G EI L Q+ +A+ GK GEK SDL+ ++ + G R+R Sbjct: 171 PIKDIVEEARLAIEDGCVEIELTAQDTSAF-GKDT-GEK--LSDLIKEVASLDGDFRVRV 226 Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 HPR++ D LI+A ++ + ++HLP+QSGSD++L+ M R HT +Y+ I+ Sbjct: 227 GMMHPRNIGNDLDNLIEAF-KMEKVYDFIHLPIQSGSDKVLREMGRNHTVDDYKNIVYSF 285 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + PDI I++D I+G+P ET++DF T +L+ +I + KY R G S++ Sbjct: 286 KQAIPDITIATDIIIGYPTETEEDFMKTAELIREIKFNLIHLSKYQHREGAISSSL---- 341 Query: 383 DENVKAERLLCLQKKLREQQVSF----NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 +N+ + + K L E + N + ++ L+ + G + G + + ++ V Sbjct: 342 -DNIPFDDMKRRSKYLSEIKFEMLEEENKFLQDREMDALVVEKGSKGGFIAKTNSYIPVV 400 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V ++ N+G+ IKV I + L G + Sbjct: 401 V---QDVNLGEFIKVHIDKTTGTYLIGHKI 427 >gi|312888457|ref|ZP_07748031.1| SSU ribosomal protein S12P methylthiotransferase [Mucilaginibacter paludis DSM 18603] gi|311299085|gb|EFQ76180.1| SSU ribosomal protein S12P methylthiotransferase [Mucilaginibacter paludis DSM 18603] Length = 444 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 130/456 (28%), Positives = 219/456 (48%), Gaps = 41/456 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS---MDDADLIVLNTCHIREKAAEKVYS 82 R V + GC N YDS + ++ V+ + D+IV+NTC + A ++ Sbjct: 16 RVNVVTLGCSKNTYDSEILMGQLRGNSFDVVHESGELASDDIIVINTCGFIDNAKQESID 75 Query: 83 FLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L+ S +KE G + V+V GC+++ E+ V+ G L LL+ Sbjct: 76 TI-----LQYSELKEQGKVGKVIVTGCLSERYKPELEAEITNVDAYFGTND---LQNLLQ 127 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 V +Y E ERL + A+ I EGC++ C+FC +P RG Sbjct: 128 S-------VGANYKYELLGERLLTTPSHF-------AYFKISEGCNRPCSFCAIPLMRGK 173 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 +S + Q+V +A L NG E+ ++ Q++ + G L G++ +LL LS++ G+ Sbjct: 174 HLSTPMEQLVKDAENLARNGTKELVVIAQDL-TYYGLDLYGKR-NLDELLRRLSDVNGIE 231 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R ++P ++ + + Y+ +P+Q SD +LKSM R T + I++ Sbjct: 232 WIRLQYAYPSGFPMEVLDVMNERSNICNYMDMPLQHISDNMLKSMRRGITKQKTIDIVNA 291 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR PDIA + I G+PGET DF MD V++ + + F YS T +++ Sbjct: 292 IRDKVPDIAFRTTLITGYPGETQQDFEEMMDWVEETRFDRLGCFTYSHEEKTHAHQLVDD 351 Query: 382 VDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435 V + VK ER + + +Q +SF N +G +VLI+K KE VGR SP + Sbjct: 352 VPDEVKQERADAIMEI--QQGISFDKNQERIGHTYKVLIDK--KEGDYFVGRTEFDSPEV 407 Query: 436 QS-VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468 + V++++ H +G + V+I + + LYG++V Sbjct: 408 DNEVLIDASKHYATVGSFVNVKIDNAEDFDLYGQIV 443 >gi|189425283|ref|YP_001952460.1| MiaB-like tRNA modifying enzyme [Geobacter lovleyi SZ] gi|189421542|gb|ACD95940.1| MiaB-like tRNA modifying enzyme [Geobacter lovleyi SZ] Length = 442 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 117/449 (26%), Positives = 213/449 (47%), Gaps = 24/449 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSF 83 +RF V + GC++N +++ M + + G+++V + ADL ++N+C + ++ AE Sbjct: 10 KRFAVATLGCKVNQFETADMIEQMQTAGWQQVKFSEVADLYLINSCTVTARSDAESRRLI 69 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-VNVVVGPQTYYRLPELLER 142 R +++I V GC AQ ++L + ++V+G Q + L + +++ Sbjct: 70 RRARRTNPHAKI--------VATGCYAQVAPADLLNLPDLQPDLVLGNQEKHDLVQHIKQ 121 Query: 143 ARFGKRVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R ++ D T S + + R AFL IQ GC+ C++C+VP RG Sbjct: 122 GR--HQITDLTSLKASGPLRLTSFAE--HTR-----AFLQIQNGCETGCSYCIVPIARGP 172 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 S +V++ +L+ +G E+ L G ++ A+ GLD + + L+ L + + Sbjct: 173 SRSVPPPEVLEAVSRLVASGYQEVVLTGIHMGAY---GLDLSPPGSLTALVQQLEDQNVV 229 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR + P +++D L+ L +LH+P+QSGSD +L+ M R + Y I Sbjct: 230 PRLRLGSIEPNELTDELLTLFKKSSRLCHHLHIPLQSGSDSVLQRMGRGYNTSFYANRIV 289 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + PD I++D I GFPGET+ +F T + V + A F YS R GT + M Sbjct: 290 TAAQLLPDAFIAADLIAGFPGETEQEFSETCNFVTSLPLADLHVFPYSTRPGTKAAAMSG 349 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 + + ER L+ +++ +F +G ++++L +++ + G L G S V Sbjct: 350 HLKPAIIKERAEHLRGIAADKRAAFQHRFIGSVLQILGQRYSVKTGVLTGLSRNYLEVSY 409 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELVV 469 + + V I ++ L G L+ Sbjct: 410 QGSTQLLNQEVMVEIQALQNGLLTGRLIT 438 >gi|119505065|ref|ZP_01627141.1| hypothetical protein MGP2080_15289 [marine gamma proteobacterium HTCC2080] gi|119459047|gb|EAW40146.1| hypothetical protein MGP2080_15289 [marine gamma proteobacterium HTCC2080] Length = 440 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 126/424 (29%), Positives = 196/424 (46%), Gaps = 43/424 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYS 82 P++ S GC + DS R+ S GYE + +DA ++++NTC + A AE + + Sbjct: 5 PEKVGFISLGCPKALVDSERILTQLRSDGYEVTPNYEDAGVVIVNTCGFIDSAKAESLEA 64 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPELLE 141 + ++E G +LV GC+ + + I P + + GP Y + + Sbjct: 65 I--------SEAVQENGRVLVT--GCMGKGDDARRIQDLHPNILGISGPAAYEEVVGAVH 114 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R D R I G A+L I EGC+ C FC++P RG Sbjct: 115 EVIPMTRQPDP--------LRDLIPAQGVKLTPRHYAYLKISEGCNHRCKFCIIPSMRGD 166 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +SR + ++ EA L+ GV E+ ++ Q+ +A W G+ L + T + Sbjct: 167 LVSRPIGDIMREAEALVRAGVRELLVISQDTSAYGVDLKYRTDFWEGRPLKSDLLTLAK- 225 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 +L E VRL Y +P D LI + +L PYL +P+Q GS +L+ M R Sbjct: 226 --TLGEFGIWVRLHYVYPYPN--VDALIPLMAEKKIL-PYLDVPLQHGSPSVLQRMKRPA 280 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 A + + I R R + PDI + S FIVG+PGET+ +F+ +D +D+ +A F+YSP Sbjct: 281 AAEKTLERIKRWRDICPDITLRSTFIVGYPGETEAEFQELLDFIDEAQIDRAGCFQYSPV 340 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKL 428 G + + V E VK ER R+Q +S N VG VLI++ E + Sbjct: 341 KGATANELPNHVSETVKQERWDAFMA--RQQTISANKLAKKVGTTQAVLIDE--VEGDRA 396 Query: 429 VGRS 432 +GRS Sbjct: 397 IGRS 400 >gi|160933141|ref|ZP_02080530.1| hypothetical protein CLOLEP_01984 [Clostridium leptum DSM 753] gi|156868215|gb|EDO61587.1| hypothetical protein CLOLEP_01984 [Clostridium leptum DSM 753] Length = 424 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 124/430 (28%), Positives = 207/430 (48%), Gaps = 26/430 (6%) Query: 51 QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA 110 +G++ V+ + D ++NTC E A ++ + + LK +EG +VV GC+A Sbjct: 9 EGFQLVDDVAMGDAAIVNTCGFIESAKQESIEEILELAKLK----EEGRIKAIVVTGCLA 64 Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170 + +EI + P VN VVG + ++ A GKR+ E E + Sbjct: 65 ERYQQEIAKELPEVNAVVGIGANKEIARIVREALEGKRIETFPPKCELPLEGERV----- 119 Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 ++L I EGCD CT+C +P RG SR + ++ EA KL GV E+ ++ Q Sbjct: 120 QSTPSYFSYLKIAEGCDNHCTYCAIPLIRGGYRSRKMEDILAEAEKLAQWGVKELMVIAQ 179 Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290 + + G+ L GE LL L +++GL +R +P ++D L++ D ++ Y Sbjct: 180 DTTRY-GEDLYGEG-KLPQLLTELCKVEGLRWIRVLYCYPERITDELLEVMAKEDKILKY 237 Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350 + LP+Q S ++L++MNR+ +I +IR P I + + F+VGFPGET++ F Sbjct: 238 MDLPLQHCSRQVLRAMNRQGDRESLSALIRKIREKVPGIVLRTTFMVGFPGETEEAFEEL 297 Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND--- 407 + ++ + + F YS GTP + + +Q+ +K R Q+ + EQQ++ D Sbjct: 298 AEFAKEMRFERMGCFAYSQEEGTPAARLPDQISREIKEHR----QELMMEQQMALMDEMS 353 Query: 408 -ACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV---LNSKNHNIGDIIKVRITDVK 459 VG+ I VL E + GRS P + + V + K G ++V ITD Sbjct: 354 REMVGKTITVLNEGWDRYAECCFGRSAADAPEIDTKVFFTVEGKKPYPGMFVQVEITDTM 413 Query: 460 ISTLYGELVV 469 L G++V Sbjct: 414 DCDLIGQVVT 423 >gi|54293668|ref|YP_126083.1| hypothetical protein lpl0721 [Legionella pneumophila str. Lens] gi|81369118|sp|Q5WYL5|RIMO_LEGPL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|53753500|emb|CAH14955.1| hypothetical protein lpl0721 [Legionella pneumophila str. Lens] Length = 435 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 132/458 (28%), Positives = 218/458 (47%), Gaps = 51/458 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ +QGYE V + +DA ++V+NTC + A ++ + + Sbjct: 9 SLGCPKALVDSERIITQLKAQGYELVPTYEDAGVVVINTCGFIDSAVQE------SLDTI 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K + + G V+V GC+ A+ + I P V + G Y + + + Sbjct: 63 KEAMAENGR---VIVTGCLG-AKADVIKNACPDVLHISGAHAYEEVVNAVHQHLPPP--- 115 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F +L I G A+L I EGC++ CTFC++P RG S ++Q+ Sbjct: 116 ------ADPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKLQSYPMAQI 168 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA+KL GV E+ ++ Q+ +A W+GK ++ F DL L E+ Sbjct: 169 LTEAKKLKQAGVKELLVISQDTSAYGVDTRYQQVEWQGKTVNTR---FYDLCEQLGELGI 225 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P D ++ D +++PYL +P+Q + RILK+M R ++ I Sbjct: 226 WVRLHYVYPYPH--VDDIVPLMRD-GLILPYLDIPLQHANSRILKAMKRPASSENTLLRI 282 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R + PDI + S FIVGFPGET+++F + + + + FKYSP G +++ Sbjct: 283 ASWREICPDITLRSTFIVGFPGETEEEFSELLAFLKEAQLDRVGCFKYSPVEGAKANDLD 342 Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432 V E++K E R + +Q ++ ++ +G VLI++ ++ +++ RS Sbjct: 343 NPVSEDIKEERYHRFMQVQAEISRNKLKNK---IGSTQTVLIDEITED--QIIARSKSDA 397 Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 P + +V K I G +V ITD LY LV Sbjct: 398 PEIDGLVYLPKISGITVGSFAEVVITDSDDYDLYASLV 435 >gi|270308233|ref|YP_003330291.1| tRNA modification enzyme, MiaB family [Dehalococcoides sp. VS] gi|270154125|gb|ACZ61963.1| tRNA modification enzyme, MiaB family [Dehalococcoides sp. VS] Length = 416 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 115/406 (28%), Positives = 198/406 (48%), Gaps = 35/406 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + + GC++N ++ + F GY V+ D+ D+ +LNTC + A K + RI Sbjct: 6 LDTLGCKLNQAETEAIGREFAEAGYRLVSPQDNWDIYILNTCTVTHVADRKA-RYQVRIA 64 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 N + + + GC A+ G+ I P N+++ + R +++ R Sbjct: 65 RRHNP------NGFICLTGCYAENGGDGIT--CPDANLILDNE---RKADIVAEI---VR 110 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + + S + +E + R R +F+ IQ+GCD FC++C+VP+ R + R + Sbjct: 111 LFPLEVSAKALYE--------HGRTR---SFIKIQDGCDNFCSYCIVPFVRRNKSCREVG 159 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +++ E G EI L G + + G + + L+ S+ E + RLR ++ Sbjct: 160 EIISEINLRQAEGYQEIVLTGTEIGEYTSGGFN-----LAGLIKSILEFTFIPRLRLSSL 214 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P +++ L+ + L + H+ +QSGSDRIL M R + +Y ++ IR+ PD Sbjct: 215 QPNEITPQLLALWQN-PRLCNHFHIALQSGSDRILSFMQRPYALTDYTCTLESIRACLPD 273 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 A+++D IVGFPGETD+DF ++ V+K G+A+ F YS R GT S M ++D V Sbjct: 274 TAVTTDVIVGFPGETDEDFLLSLRYVEKAGFARVHPFPYSERPGTFASAMSGKLDPAVIK 333 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSP 433 RLL + + + + +G +VL E K +G L G +P Sbjct: 334 TRLLQMMFAAKNASLQYRRQKIGMERDVLWEN--KTRGGLWFGYTP 377 >gi|120603130|ref|YP_967530.1| RNA modification protein [Desulfovibrio vulgaris DP4] gi|120563359|gb|ABM29103.1| RNA modification enzyme, MiaB family [Desulfovibrio vulgaris DP4] Length = 458 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 119/430 (27%), Positives = 196/430 (45%), Gaps = 49/430 (11%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F ++GC++N Y++ + + + +G+ V++ + AD+I++NTC + +A V + R Sbjct: 8 FHAATFGCKVNQYETQSLREAWLRRGFTEVDTPEGADVILVNTCAVTARAVSDVRRAIAR 67 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV----------VGPQTYYRL 136 + + +VV GC AQ EE +V VV P Sbjct: 68 LHRAAPA-------AGIVVTGCAAQVLREEFAGLPGVVAVVPQEAKATLAAYDPAAAIMP 120 Query: 137 PELLERARFGKR-----------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185 P A VV SV F R+ G+ R R V + +Q+G Sbjct: 121 PVSTHDAHCDAATAQASSATSGDVVPAQASVFPDF-RIE----GFRRARPV---VKVQDG 172 Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245 C CT+C+VP TRG SR +VV E R+L+D G E+ L G N+ + G+ L G Sbjct: 173 CSHRCTYCIVPLTRGASRSREPGEVVAELRRLLDAGFREVMLSGVNLRLY-GRDLSGAG- 230 Query: 246 TFSDLLYSL-----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300 F DLL + E G RLR ++ P + + G ++ P LHL +QSGS Sbjct: 231 DFWDLLQRVERELAPEWAGRARLRISSLEPGQLGAHALDVLGGSRLVCPQLHLSLQSGSP 290 Query: 301 RILKSMNRRHTAYEYRQIIDRIR---SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 +L+ M R H Y ++D +R P + +D ++GFPGE++D F T+D + Sbjct: 291 DVLRRMGRGH--YSPAPLLDFLRDLGGTWPVFGLGADILMGFPGESEDAFAETLDFARAL 348 Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG-QIIEV 416 A F YS R GT +++ E + + ++ R ++ + +++ F + G + V Sbjct: 349 PLTYAHVFPYSRRPGTVAASLPEHLPQEIRKARAAAVRDVVAQKRAVFAERLAGLPALSV 408 Query: 417 LIEKHGKEKG 426 +++ G KG Sbjct: 409 VLDGAGARKG 418 >gi|54296709|ref|YP_123078.1| ribosomal protein S12 methylthiotransferase [Legionella pneumophila str. Paris] gi|81371029|sp|Q5X765|RIMO_LEGPA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|53750494|emb|CAH11888.1| hypothetical protein lpp0740 [Legionella pneumophila str. Paris] Length = 439 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 133/461 (28%), Positives = 220/461 (47%), Gaps = 59/461 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ +QGYE V + +DA ++V+NTC + A ++ + + Sbjct: 9 SLGCPKALVDSERIITQLKAQGYELVPTYEDAGVVVINTCGFIDSAVQE------SLDTI 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K + + G V+V GC+ A+ + I P V + G Y + VV Sbjct: 63 KEAMAENGR---VIVTGCLG-AKADVIKNACPDVLHISGAHAY-------------EEVV 105 Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + D F +L I G A+L I EGC++ CTFC++P RG S Sbjct: 106 NAVHQHLPPPADPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKLQSYP 164 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 ++Q++ EA+KL GV E+ ++ Q+ +A W+GK ++ F DL L Sbjct: 165 MAQILTEAKKLKQAGVKELLVISQDTSAYGVDTRYQQIEWQGKTVNTR---FYDLCEQLG 221 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 E+ VRL Y +P D ++ D +++PYL +P+Q + RILK+M R ++ Sbjct: 222 ELGIWVRLHYVYPYPH--VDDIVPLMRD-GLILPYLDIPLQHANSRILKAMKRPASSENT 278 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I R + PDI + S FIVGFPGET+++F + + + + FKYSP G Sbjct: 279 LLRIASWREICPDITLRSTFIVGFPGETEEEFSELLAFLKEAQLDRVGCFKYSPVEGAKA 338 Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 +++ V E++K E R + +Q ++ ++ +G VLI++ ++ +++ RS Sbjct: 339 NDLDNPVSEDIKEERYHRFMQVQAEISRNKLKNK---IGSTQTVLIDEITED--QIIARS 393 Query: 433 ----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467 P + +V K I G + ITD LYG+L Sbjct: 394 KSDAPEIDGLVYLPKISGITVGSFAEAMITDSDDYDLYGDL 434 >gi|260587677|ref|ZP_05853590.1| tRNA-I(6)A37 modification enzyme MiaB [Blautia hansenii DSM 20583] gi|260541942|gb|EEX22511.1| tRNA-I(6)A37 modification enzyme MiaB [Blautia hansenii DSM 20583] Length = 312 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 149/259 (57%), Gaps = 23/259 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + ++GCQMN DS ++ + GY V ++AD ++ NTC +RE A +VY LG + Sbjct: 62 ITTFGCQMNARDSEKLVGILERIGYVEVPD-ENADFVIYNTCTVRENANLRVYGRLGYLH 120 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +LK K+ +++ + GC+ Q E++ + VN++ G Y+ EL+ + Sbjct: 121 SLK----KKNPHMMIGLCGCMMQEPQVVEKLKKSYSFVNLIFGTHNIYKFAELVVSSLLS 176 Query: 147 KRVV-----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R++ DTD VED V+ Y K GV I GC+ FC++C+VPY RG Sbjct: 177 DRMIIDIWKDTDKIVED-----LPVERKYPFKSGVN----IMFGCNNFCSYCIVPYVRGR 227 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR+ +V E +L+ +GV E+ LLGQNVN++ GK LD E TF+ LL + +I+GL Sbjct: 228 ERSRNPKDIVREIERLVKDGVVEVMLLGQNVNSY-GKNLD-EPMTFAQLLTEIEKIEGLK 285 Query: 262 RLRYTTSHPRDMSDCLIKA 280 R+R+ TSHP+D+SD LI+ Sbjct: 286 RIRFMTSHPKDLSDELIEV 304 >gi|303230864|ref|ZP_07317611.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella atypica ACS-049-V-Sch6] gi|302514624|gb|EFL56619.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella atypica ACS-049-V-Sch6] Length = 448 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 119/414 (28%), Positives = 209/414 (50%), Gaps = 24/414 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M + GY +++ +ADLI++NTC EKA E+ + + L Sbjct: 9 SLGCAKNLVDTEVMLGLLKDDGYTITDNLHEADLIIINTCTFIEKAKEESINTI-----L 63 Query: 91 KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + ++ KE G ++VAGC++Q +E+ P ++ ++G + ++ ++ G R Sbjct: 64 EAAQYKETGRCKGLIVAGCLSQQYQDELFTEIPEIDALIGTGAWDQVMVAVDAIEHGNRS 123 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + ER+ + +A++ I EGC+ CTFC++P RG SRS+ Sbjct: 124 CIMENITNIYDERMPRI----QTTPRYSAYVKIAEGCNNGCTFCIIPKVRGAFRSRSIES 179 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 + E +L +GV EI L+ Q+ ++ G L+ K ++LL L++++G+ +R + Sbjct: 180 IKAEVERLATSGVKEIVLIAQDTTSY-GIDLNNGKPLLTELLKELTKVEGIEWIRMLYLY 238 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P SD L+ + L Y+ +P+Q ++ ILK MNRR + + +++ +IR+ + Sbjct: 239 PTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDSREDIERLLKKIRNAPTHV 298 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 + + IVGFPGETD+ F+ + V I + F YS GT +QV E+VK E Sbjct: 299 TLRTSIIVGFPGETDEQFQELCEFVKDIKFDNMGVFTYSQEEGTIAGAREDQVPEDVKEE 358 Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-------EKGKLVGRSP 433 R L+ +Q + E+ N G I +IE+ + KG+L ++P Sbjct: 359 RYHTLMSIQAAISEEN---NRDLEGTIDYAMIEELEEGDNDTVLAKGRLKSQAP 409 >gi|170692354|ref|ZP_02883517.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia graminis C4D1M] gi|170142784|gb|EDT10949.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia graminis C4D1M] Length = 463 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 127/470 (27%), Positives = 213/470 (45%), Gaps = 60/470 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ +G N Sbjct: 21 SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEALN- 79 Query: 91 KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146 +N + V+V GC+ A G ++ P V V GP + + E+++ Sbjct: 80 ENGK--------VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGP---HAVGEVMQHVHMH 128 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D F L + G A+L I EGC+ CTFC++P RG +SR Sbjct: 129 LP------KPHDPFVDL-VPPAGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRP 181 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 +++V+ EA L +GV E+ ++ Q+ +A W GK + K +DL+ +L Sbjct: 182 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRMTDLVGALG 238 Query: 256 EIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 E+ VRL Y +P M+ K H ++PYL +P Q +LK Sbjct: 239 ELAAQYGAWVRLHYVYPYPSVDEVIPMMATGPYKGH-----VLPYLDVPFQHAHPEVLKR 293 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R A + + + R + PD+ I S FI GFPGET++ F+ +D + + + F Sbjct: 294 MKRPANAEKVMERVKAWREMCPDLTIRSTFIAGFPGETEEQFQTLLDFIREAELDRVGCF 353 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 YSP G + + + + V+ ER + + VG+ ++VL+++ + Sbjct: 354 AYSPVEGATANELDGALPDEVREERRARFMEVAEQVSAKRIAKKVGKTLKVLVDEINADG 413 Query: 426 --GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 414 GIGRTAADAPEIDGVVYIAPAAKASKRYKVGDFVSVKITGADGHDLWGEV 463 >gi|307609481|emb|CBW98976.1| hypothetical protein LPW_07611 [Legionella pneumophila 130b] Length = 435 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 132/458 (28%), Positives = 218/458 (47%), Gaps = 51/458 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ +QGYE V + +DA ++V+NTC + A ++ + + Sbjct: 9 SLGCPKALVDSERIITQLKAQGYELVPTYEDAGVVVINTCGFIDSAVQE------SLDTI 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K + + G V+V GC+ A+ + I P V + G Y + + + Sbjct: 63 KEAMAENGR---VIVTGCLG-AKADVIKNACPDVLHISGAHAYEEVVNAVHQHLPPP--- 115 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F +L I G A+L I EGC++ CTFC++P RG S ++Q+ Sbjct: 116 ------ADPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKLQSYPMAQI 168 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA+KL GV E+ ++ Q+ +A W+GK ++ F DL L E+ Sbjct: 169 LTEAKKLKQAGVKELLVISQDTSAYGVDTRYQPVEWQGKTVNTR---FYDLCEQLGELGI 225 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P D ++ D +++PYL +P+Q + RILK+M R ++ I Sbjct: 226 WVRLHYVYPYPH--VDDIVPLMRD-GLILPYLDIPLQHANSRILKAMKRPASSENTLLRI 282 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R + PDI + S FIVGFPGET+++F + + + + FKYSP G +++ Sbjct: 283 ASWREICPDITLRSTFIVGFPGETEEEFSELLAFLKEAQLDRVGCFKYSPVEGAKANDLD 342 Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432 V E++K E R + +Q ++ ++ +G VLI++ ++ +++ RS Sbjct: 343 NPVSEDIKEERYHRFMQVQAEISRNKLKNK---IGSTQTVLIDEITED--QIIARSKSDA 397 Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 P + +V K I G +V ITD LY LV Sbjct: 398 PEIDGLVYLPKISGITVGSFAEVVITDSDDYDLYASLV 435 >gi|266623033|ref|ZP_06115968.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium hathewayi DSM 13479] gi|288865205|gb|EFC97503.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridium hathewayi DSM 13479] Length = 234 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 138/227 (60%), Gaps = 8/227 (3%) Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 GK L+ E TF+ LL + I GL R+R+ TSHP+D+SD LI+ + D + +LHLP+Q Sbjct: 3 GKNLE-EPMTFAKLLQEVEAIDGLRRIRFMTSHPKDLSDELIEVMKNSDKICHHLHLPLQ 61 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 SGS RILK+MNRR+T +Y +++++IR+ PDI++++D IVGFPGET++DF TMD+V + Sbjct: 62 SGSSRILKAMNRRYTKEQYLELVEKIRAAVPDISLTTDIIVGFPGETEEDFSETMDVVRR 121 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC---VGQI 413 + + AF+F YS R GTP + M +Q+ E+V R + L E Q + C V + Sbjct: 122 VRFDSAFTFIYSRRTGTPAAAMEDQIPEDVVKNR---FDRLLSEVQAVSAEVCGRDVHTV 178 Query: 414 IEVLIEKHGKE-KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459 VL+E+ +G + GR V IG I+ V + + K Sbjct: 179 KSVLVEELDDHVEGFVTGRLDNNTIVHFKGDRSLIGKIVDVYLDESK 225 >gi|193215424|ref|YP_001996623.1| RNA modification enzyme, MiaB family [Chloroherpeton thalassium ATCC 35110] gi|193088901|gb|ACF14176.1| RNA modification enzyme, MiaB family [Chloroherpeton thalassium ATCC 35110] Length = 338 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/341 (31%), Positives = 172/341 (50%), Gaps = 20/341 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + F QGYE V+ + ADL ++NTC + E A +K R Sbjct: 8 TLGCKLNYSETASLAEQFLKQGYELVSFGEKADLTIINTCSVTENANQKC-------RQA 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL----PELLERARFG 146 +K+ + VVV GC AQ E E L V++V+G Q + L P LE+ Sbjct: 61 VRRALKKSPESFVVVLGCYAQLE-PEALASIDGVDLVLGAQEKFNLTHFVPSDLEKNGEA 119 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K V +D + D F+ + N + A+L IQ+GCD C FC +P RG S++ Sbjct: 120 KIYV-SDIYLHDGFDAAHSITLQTNAELRTRAYLKIQDGCDYSCAFCTIPMARGASRSQA 178 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +++ V +A L+ G EI L G NV + GE + R+R + Sbjct: 179 VAETVRQAETLLQAGYQEIVLTGVNVGDYGTPA--GENLLDLLKALKAVPVP---RIRIS 233 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P +S LI + + ++P+ H+P+QSGSD +L+ M RR+ YR+ I I+S+ Sbjct: 234 SIEPNLVSSELIAFIANSNQVLPHFHMPLQSGSDEMLRGMRRRYLRSLYRERILEIKSLM 293 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDK--IGYAQAFSF 365 P I +D IVGFPGE+D +F+ T ++ + Y F+F Sbjct: 294 PAACIGADVIVGFPGESDANFQETYQFLESLPVSYLHVFTF 334 >gi|73541046|ref|YP_295566.1| hypothetical protein Reut_A1352 [Ralstonia eutropha JMP134] gi|123732951|sp|Q472G1|RIMO_RALEJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|72118459|gb|AAZ60722.1| Protein of unknown function UPF0004:Conserved hypothetical protein 1125 [Ralstonia eutropha JMP134] Length = 452 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 140/477 (29%), Positives = 222/477 (46%), Gaps = 65/477 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GY + D ADL+V+NTC ++A ++ Sbjct: 8 PRVGFV-SLGCPKALVDSEQIITQLRAEGYAISGTYDGADLVVVNTCGFIDEAVQESLDA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G +I+ P V V GP + L E+ Sbjct: 67 IGEA-------LTENGK--VIVTGCLGAKKDAAGHDIVSSVHPKVLAVTGP---HALGEV 114 Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++ V T D F L + G A+L I EGC+ C+FC++P Sbjct: 115 MQ-------AVHTHLPKPHDPFTDL-VPAAGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 166 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR +++V+ EA L GV E+ ++ Q+ +A W G+ L K Sbjct: 167 RGDLVSRPVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRM 223 Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 ++L+ +L E+ VRL Y +P D +I VL PYL +P+Q +L Sbjct: 224 TELVAALGELAAQYGAWVRLHYVYPYPH--VDEIIPLMNGGHVL-PYLDVPLQHAHPDVL 280 Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 K M R A + +DRIR+ R PD+ I S FI GFPGET+ +F +D + + Sbjct: 281 KRMKRPANA---EKTLDRIRAWREVCPDLTIRSTFIAGFPGETEAEFETLLDFIAEAELD 337 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + F YSP G +++ + + V+ ER + E VGQ + VLI++ Sbjct: 338 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAEEVSARRLQRKVGQTLRVLIDE 397 Query: 421 HGKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ G +GRS P + +V S+ + GD ++V+IT L+GE+ Sbjct: 398 VNQDGG--IGRSSADAPEIDGLVYIAPPAKPSQRYRAGDFVQVKITGADGHDLWGEI 452 >gi|303272277|ref|XP_003055500.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463474|gb|EEH60752.1| predicted protein [Micromonas pusilla CCMP1545] Length = 525 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 124/425 (29%), Positives = 204/425 (48%), Gaps = 22/425 (5%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 P+R V S GC N D M F+ G++ ++ +DAD +++NTC E A + Sbjct: 59 APRRAKVSMVSLGCPKNTVDGEVMLGDLFANGFDVIDEHEDADAVIINTCGFVEDAKNES 118 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 + +K K G ++V GC+AQ E++ ++VV+G + Y LP + Sbjct: 119 VDAILAAAAMKADSEKNGKKQKIIVTGCLAQRYAEDLAEEMSEIDVVMGFEEYKNLPAEI 178 Query: 141 ERARFGKRVVDTDYSVEDKFE-RLSIVDGGYN----RKRGVT---AFLTIQEGCDKFCTF 192 ++ G V+ D + R+ + RKR A+L + EGCD CTF Sbjct: 179 GQS-LGVDVLRQDDGGNKRGRVRVGTASPPFRPEALRKRLTPNHYAYLRVAEGCDHKCTF 237 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDL 250 C +P RG S+ +VDEA+ L D G E+ L+ ++ N W K DG ++L Sbjct: 238 CAIPGFRGKFRSKPWDSIVDEAKALADTGAKELCLIAEDTNQWGMDMKASDGR--GLAEL 295 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN--- 307 L L+ + G+ +R ++P S+ LI A D+ + Y+ +P+Q ++ L MN Sbjct: 296 LERLAVVDGVEWIRILYAYPSYFSEELIDAIADIPQVCKYIDIPLQHITNLSLLRMNRPP 355 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R+HT ++ DRI P +A+ + FI GFPGET ++ M + + + +F Y Sbjct: 356 RQHTEDLLHKLRDRI----PGLALRTTFISGFPGETQEEHDDLMKFCKEFKFQRLGAFAY 411 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 S GTP + +QV+ V+ R L + ++ F + VGQ ++V+I+ + Sbjct: 412 SEEDGTPAAEYPDQVELAVRELRRDQLISQQQDISEDFALSRVGQELDVIIDGFNPDFDA 471 Query: 428 LVGRS 432 VGRS Sbjct: 472 WVGRS 476 >gi|217977076|ref|YP_002361223.1| MiaB-like tRNA modifying enzyme YliG [Methylocella silvestris BL2] gi|217502452|gb|ACK49861.1| MiaB-like tRNA modifying enzyme YliG [Methylocella silvestris BL2] Length = 457 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 128/466 (27%), Positives = 220/466 (47%), Gaps = 58/466 (12%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS ++ ++GYE S D A +++NTC + A + Sbjct: 24 APRIAFV-SLGCPKALVDSEQIISRLRAEGYELTKSYDGAAAVIVNTCGFLDSAKAESLE 82 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + + ++V GC+ AE E I R P + + GPQ + + + + Sbjct: 83 AIG---------AAQAANGKIIVTGCMG-AEPEGISTRFPDLFRITGPQDFDSVMQAVHA 132 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A R D + + I G A+L I EGC+ C+FC++P RG Sbjct: 133 A--APRPHDAKFDL--------IPAQGVKLTPRHYAYLKISEGCNNRCSFCIIPKLRGDL 182 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--------GE---KCTFSDLL 251 SR ++++ EA KL+ GV E+ ++ Q+ +A+ GLD G+ K F DL+ Sbjct: 183 ASRPAAEILREAEKLVAAGVRELLVISQDTSAY---GLDLRYSESMFGDRVVKAKFIDLI 239 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L + VRL Y +P + A G +++PYL +P Q S +L++M R Sbjct: 240 RELGALGVWVRLHYVYPYPHVDEAIELMAQG---LVLPYLDIPFQHASKEVLRAMKRPGD 296 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + + I + R++ P++AI S FIVGFPGETD+DF +D ++ + +FKY P Sbjct: 297 QEKTLERIRKWRTICPELAIRSTFIVGFPGETDEDFAILLDWLEAAKLDRVGAFKYEPVE 356 Query: 372 GTPGSNM----LEQVDENVKAERLL-----CLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 G +++ + ++++ R + KKL+E+ +G+ ++V+I+ G Sbjct: 357 GAAANSLGRAFVPAEIQDLRYRRFMERAQTISAKKLKEK--------IGRRLQVIIDVGG 408 Query: 423 KEK-GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465 +E G+ +P + V + + G+I+ V+I LYG Sbjct: 409 REAVGRSKADAPEIDGKVFVASRRPLRTGEIVTVKIERANAYDLYG 454 >gi|154248395|ref|YP_001419353.1| MiaB-like tRNA modifying enzyme YliG [Xanthobacter autotrophicus Py2] gi|238055317|sp|A7INV0|RIMO_XANP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|154162480|gb|ABS69696.1| MiaB-like tRNA modifying enzyme YliG [Xanthobacter autotrophicus Py2] Length = 449 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 136/464 (29%), Positives = 212/464 (45%), Gaps = 48/464 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE + ADL+V+NTC + A + + Sbjct: 14 APRISFV-SLGCPKALVDSERIVTRLRAEGYELTKTHQGADLVVVNTCGFLDSAKAESLN 72 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + E G VVV GC+ AE E+I P V + GPQ Y + + Sbjct: 73 AIGEA-------LAENGK--VVVTGCMG-AEPEQIREVHPSVLAITGPQQYESVLAAVHE 122 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D F L +G R A+L I EGC CTFC++P RG Sbjct: 123 AV---------PPAHDPFLDLVPAEGVKLTPRHY-AYLKISEGCSNRCTFCIIPKLRGDL 172 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--------GEK---CTFSDLL 251 +SR V+ EA +L+ GV E+ ++ Q+ +A+ G+D G+K F DL Sbjct: 173 VSRPAGDVLREAERLVKAGVKELLVISQDTSAY---GVDLRYATSPWGDKEVAARFLDLA 229 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L ++ VRL Y +P + + A G + +PYL +P Q S +LK M R + Sbjct: 230 GALGDLGAWVRLHYVYPYPHVDAVMELMAAGKV---LPYLDIPFQHASPTVLKRMKRPAS 286 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + I R+ PD+ + S FIVGFPGET+ +F + +++ +A FK+ P Sbjct: 287 QEKTLARIQAWRAAVPDLTLRSTFIVGFPGETEAEFEELLGFLEEAEIDRAGCFKFEPVR 346 Query: 372 GTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--G 426 G + + V + VKAE R + Q+K+ +++ VG V+I+ + G Sbjct: 347 GADANALENPVPDAVKAERYDRFMRTQQKVSARRLKRK---VGTRQSVIIDTVTPDGGIG 403 Query: 427 KLVGRSPWLQSV--VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + G +P + V + +G+I V+I L G V Sbjct: 404 RTKGDAPEIDGTVKVFARRPLRVGEIATVKIEAAGPYDLSGTAV 447 >gi|303229340|ref|ZP_07316130.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella atypica ACS-134-V-Col7a] gi|302515876|gb|EFL57828.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella atypica ACS-134-V-Col7a] Length = 448 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 119/414 (28%), Positives = 208/414 (50%), Gaps = 24/414 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M + GY +++ +ADLI++NTC EKA E+ + + L Sbjct: 9 SLGCAKNLVDTEVMLGLLKDDGYTITDNLHEADLIIINTCTFIEKAKEESINTI-----L 63 Query: 91 KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + ++ KE G ++VAGC++Q +E+ P ++ ++G + ++ ++ G R Sbjct: 64 EAAQYKETGRCKGLIVAGCLSQQYQDELFTEIPEIDALIGTGAWDQIMVAVDAIEHGNRS 123 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + ER+ + +A++ I EGC+ CTFC++P RG SRS+ Sbjct: 124 CIMENITNIYDERMPRI----QTTPRYSAYVKIAEGCNNGCTFCIIPKVRGAFRSRSIES 179 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 + E +L +GV EI L+ Q+ ++ G L+ K ++LL L++++G+ +R + Sbjct: 180 IKAEVERLATSGVKEIVLIAQDTTSY-GIDLNNGKPLLTELLKELTKVEGIEWIRMLYLY 238 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P SD L+ + L Y+ +P+Q ++ ILK MNRR + + +++ +IR+ + Sbjct: 239 PTFFSDELLDIIVNEPKLCKYVDIPLQHVNNDILKQMNRRDSREDIERLLKKIRNAPTHV 298 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 + + IVGFPGETD+ F+ + V I + F YS GT +QV E VK E Sbjct: 299 TLRTSIIVGFPGETDEQFQELCEFVKDIKFDNMGVFTYSQEEGTIAGAREDQVPEEVKEE 358 Query: 390 R---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-------EKGKLVGRSP 433 R L+ +Q + E+ N G I +IE+ + KG+L ++P Sbjct: 359 RYHTLMSIQAAISEEN---NRDLEGTIDYAMIEELEEGDNDTVLAKGRLKSQAP 409 >gi|296135795|ref|YP_003643037.1| MiaB-like tRNA modifying enzyme YliG [Thiomonas intermedia K12] gi|295795917|gb|ADG30707.1| MiaB-like tRNA modifying enzyme YliG [Thiomonas intermedia K12] Length = 466 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 132/470 (28%), Positives = 209/470 (44%), Gaps = 57/470 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ +QGY+ S ADL+++NTC + A ++ +G Sbjct: 22 SLGCPKALVDSERILTELRAQGYDTSKSYAGADLVIVNTCGFIDAAVQESLDAIGEA--- 78 Query: 91 KNSRIKEGGDLLVVVAGCVAQ----AEGEEILRR-SPIVNVVVGPQTYYRLPELLERARF 145 + E G V+V GC+ A G ++R P V V GP E+L+ Sbjct: 79 ----LAENGK--VIVTGCLGARNDAATGNNLVREVHPKVLAVTGPHA---TDEVLQHVH- 128 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V+ + D F L + G A+L I EGC+ CTFC++P RG +SR Sbjct: 129 --AVLPKPH---DPFIDL-VPPAGIKLTPKHYAYLKISEGCNHRCTFCIIPAMRGDLVSR 182 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254 + +V+ EAR L +GV E+ ++ Q+ +A W G+ + D L SL Sbjct: 183 PIGEVLSEARALFASGVKELLVVSQDTSAYGVDVKYRTGFWDGRPIRTRMTELVDALGSL 242 Query: 255 S-EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 + E VRL Y +P + A G + +PYL +P+Q +LK M R + Sbjct: 243 AAEHDAWVRLHYVYPYPHVDEVLPLMAQGRI---LPYLDVPLQHAHPDVLKRMKRPASGE 299 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + I R R + P++ + S FI GFPGET+ +F+ +D + + + F YSP G Sbjct: 300 RNLERIARWREICPELVVRSTFIAGFPGETEAEFQTLLDFIREAELDRVGCFAYSPVEGA 359 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 + + + V E ++ ER E VGQ++ VL+++ +E G VGR+ Sbjct: 360 AANALADPVPEALREERRARFMAVAEEVSTRKLHKRVGQVMRVLVDQASREGG--VGRT- 416 Query: 434 WLQSVVLNSKNHNI---------------GDIIKVRITDVKISTLYGELV 468 + + ++ K H + G ++ RI L GELV Sbjct: 417 FADAPEIDGKVHLLPPDKPSTKMRLAQSGGQFVRARIVRTDGHDLVGELV 466 >gi|328718445|ref|XP_001945556.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like [Acyrthosiphon pisum] Length = 522 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 123/457 (26%), Positives = 214/457 (46%), Gaps = 41/457 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q F+K++GC N D M + + GY+ ADL +LN+C ++ A + Sbjct: 56 QTIFIKTWGCSHNSSDGEYMAGLLSNYGYKITEDKAIADLWILNSCTVKNPAED------ 109 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTYYRLPELLER 142 RN ++ K G VVVAGCV Q + ++SP + V+G Q R+ E++E Sbjct: 110 -HFRNEISTGKKSGK--FVVVAGCVPQGD-----QKSPFIQNLSVIGVQQIDRVVEVVEE 161 Query: 143 ARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G + + + K + + + RK + + I GC CT+C + RG Sbjct: 162 TLKGHTIRLLGQKKINGKKDGGARLQLPKMRKNKLIEIIAISTGCLNQCTYCKTKHARGN 221 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK--- 258 S ++V A + + G E+ L ++ A+ GLD + +LL+ L I Sbjct: 222 LGSYPPDEIVQRAIESFNEGAVELWLTSEDTGAY---GLDIQ-TNLPELLWRLVAIIPEG 277 Query: 259 -----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 G+ Y +H +++ L + +LH+PVQSGS+++L M R ++ Sbjct: 278 CMMRIGMTNPPYILNHLEEIAKILSHPR-----VYAFLHVPVQSGSNQVLADMKREYSIE 332 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 E+ +++ +R P ++I++D I GFP ET++DF TM + +K + F ++ PR GT Sbjct: 333 EFETVVNFLRQRVPGVSIATDIICGFPTETEEDFSETMSVCEKYKFPSLFINQFYPRKGT 392 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGR 431 P + M + + VK K+L E S+ D +G+I E+LI + K + +G Sbjct: 393 PAARMPKIPTDMVKIR-----TKRLTELFHSYTTYDHRIGEIQEILITEEAKNGIEFIGH 447 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + + V++ +G I+V + K L E+V Sbjct: 448 NKYYEQVLVAKDPELMGKCIEVIVKSAKKHCLIAEMV 484 >gi|313203633|ref|YP_004042290.1| miab-like tRNA modifying enzyme [Paludibacter propionicigenes WB4] gi|312442949|gb|ADQ79305.1| MiaB-like tRNA modifying enzyme [Paludibacter propionicigenes WB4] Length = 436 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/395 (27%), Positives = 194/395 (49%), Gaps = 17/395 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + +G+ +V + + AD+ ++NTC + + A K + R+ Sbjct: 16 TLGCKLNFAETSAIGKQLTDEGFAKVKTGEQADICIINTCSVTDTADHKCRQAINRLN-- 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ D +++V GC AQ + EE+ V++V+G + + E +++ G Sbjct: 74 -----RQHPDAIMIVTGCYAQLKPEEVAAIDG-VDLVLGANEKFNVLEYIQKLD-GTEKS 126 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + S + +R+ +R FL +Q+GCD FCT+C +PY RG + ++ + Sbjct: 127 EIHRS---EIKRVREFKPSCSRDDRTRYFLKVQDGCDYFCTYCTIPYARGRSRNATIPET 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V A + ++ G EI L G N+ + GK GE +F DL+ +L I VR R ++ P Sbjct: 184 VAMAMQAVEAGAKEIVLSGVNIGDF-GKST-GE--SFFDLVKALDTIPADVRFRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I MP+ H+P+QSG++ +L+ M R++ + ++ I+S+ P Sbjct: 240 NLLTDEIITYISTSHRFMPHFHIPLQSGTNEVLQLMKRKYNRELFAHKVELIKSLLPHAF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I D IVG GETD+ F + +D + +Q F YS R GT ++ V N + R Sbjct: 300 IGVDVIVGVRGETDELFEQSCRFIDSLDISQLHVFTYSERAGTKMLDIEYTVSLNERKRR 359 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKE 424 L ++ +F VG VL E +H E Sbjct: 360 SNVLHSLSEKKTKAFYQNQVGNTYPVLWESRHNGE 394 >gi|289547853|ref|YP_003472841.1| MiaB-like tRNA modifying enzyme YliG [Thermocrinis albus DSM 14484] gi|289181470|gb|ADC88714.1| MiaB-like tRNA modifying enzyme YliG [Thermocrinis albus DSM 14484] Length = 421 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 118/441 (26%), Positives = 219/441 (49%), Gaps = 41/441 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R V S GC N+ D+ + G + VN AD+I++NTC ++A E+ + Sbjct: 2 RVAVISLGCAKNLVDTEVLLGKLVKGGAKLVNDPSKADVIIVNTCGFIQQAKEEA---ID 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ERA 143 I + + + K VVV GC+ + EE+ + P V+ G +++ ++ + L + Sbjct: 59 TILDWADGKRK------VVVMGCLVERYREEMKKEFPEVSAFFGTESWDQIIQYLGLKEV 112 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + +RV+ T S A+L + EGC++ C+FC +P RG Sbjct: 113 KSSERVLTTPPSY---------------------AYLKVAEGCNRTCSFCAIPLIRGRHR 151 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S+ L +++EAR L + GV E+ ++ Q+ + GK L K LL L E++G+ + Sbjct: 152 SKPLEDLLEEARNLAERGVKELCIVSQD-TGYYGKDLYHRK-ALVQLLKKLEELEGIEWI 209 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R +P D+ + L+ D ++PYL +P+Q SDR+LKSM R ++ R+++D + Sbjct: 210 RLLYLYPTDVDEELLSYLKDSGKVLPYLDIPLQHVSDRVLKSMRRGYSGSFVRRLLDEVM 269 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++ + + F+VG+P E ++DFR + V++ + F YS TP + + + Sbjct: 270 KNLDNVVLRTTFLVGYPEEREEDFRELLRFVEEGYFHWVGVFTYSHEENTPAYPLGDPIP 329 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGR----SPWLQSV 438 ++ K R + K +E N VG+ +++L++ + +E G + VGR +P + + Sbjct: 330 QDEKELRRDAIMKAQQEITFRKNAQLVGREMDLLVDSYDEELGIVPVGRVYLQAPEVDGI 389 Query: 439 VLNSKNHNI--GDIIKVRITD 457 + I G+ +KV++T+ Sbjct: 390 CYVEADRPISPGEKLKVKVTE 410 >gi|126322223|ref|XP_001375874.1| PREDICTED: similar to CDK5 regulatory subunit associated protein 1-like 1 [Monodelphis domestica] Length = 595 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 125/458 (27%), Positives = 220/458 (48%), Gaps = 43/458 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + +ADL +LN+C ++ A + F Sbjct: 63 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENPSEADLWLLNSCTVKNPAEDH---FR 119 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERA 143 I+ + D VV+AGCV QA+ ++ L+ I+ V Q R+ E++E Sbjct: 120 NSIKKAQEE------DKKVVLAGCVPQAQPRQDYLKGLSIIGV----QQIDRVVEVVEET 169 Query: 144 RFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G V + +RL + +D RK + ++I GC CT+C + RG Sbjct: 170 IKGHSVRLLGQKKSNG-KRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGN 228 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI--- 257 S + ++VD A++ GVCEI L ++ A+ R G D LL+ L E+ Sbjct: 229 LASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPE 283 Query: 258 -----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 G+ Y H +M+ L + +LH+PVQS SD +L M R + Sbjct: 284 GAMLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMEMKREYCV 338 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 ++++++D ++ P + I++D I GFPGETD DF+ T+ LV+ + F ++ PR G Sbjct: 339 ADFKRVVDFLKEKVPGLTIATDIICGFPGETDQDFQDTLKLVEDYKFPSLFINQFYPRPG 398 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVG 430 TP + ++QV +VK +R K L + S+N D +G+ +VL+ + + V Sbjct: 399 TPAAK-IQQVPAHVKKQRT----KDLSQLFHSYNPYDHKIGERQQVLVTEESFDSKFYVA 453 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + + V++ +G +++V I + + G+ V Sbjct: 454 HNQFYEQVLVPKNPMFMGKMVEVDIYESGKHFMKGQPV 491 >gi|257094456|ref|YP_003168097.1| MiaB-like tRNA modifying enzyme YliG [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046980|gb|ACV36168.1| MiaB-like tRNA modifying enzyme YliG [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 441 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 129/470 (27%), Positives = 217/470 (46%), Gaps = 59/470 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ S GC + DS ++ ++GY S + ADL+++NTC + A E+ Sbjct: 4 PKNVGFVSLGCPKALVDSEQILTRLRAEGYLISPSYEGADLVLVNTCGFIDAAVEESLDA 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQT--------YY 134 +G + E G V+V GC+ E +++R++ P V V GP + Sbjct: 64 IGEA-------LAENGK--VIVTGCLGSRE--DLIRKAHPQVLAVTGPHATDAVLQHVHA 112 Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 LP+ D F L + G A+L I EGC+ CTFC+ Sbjct: 113 HLPQ-----------------PHDPFTSL-VPPQGIKLTPPHFAYLKISEGCNHSCTFCI 154 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCT 246 +P RG +SR + V+ EAR L D+GV E+ ++ Q+ +A+ R + G + Sbjct: 155 IPSMRGPLVSRPIGDVLQEARTLADSGVRELLVISQDTSAYGVDLKYRTGFVGGRPVRTR 214 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 +L +L ++ VRL Y +P + + A G L +PYL +P Q S R+L +M Sbjct: 215 LRELCEALGDLGIWVRLHYVYPYPSVDALVPLMAEGRL---LPYLDVPFQHASARVLAAM 271 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R +A + + R + P+I I S FI GFPGET+ +F + + + + F Sbjct: 272 KRPASAENNLERVRAWRDICPEITIRSTFITGFPGETESEFEELLAFLAEARLDRVGCFA 331 Query: 367 YSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 YSP G + + + + V+ E RL+ LQ+ + + ++ A +G+ I VL+++ Sbjct: 332 YSPVAGAAANALPGALPDEVREERRQRLMALQEDISAELLA---ARIGREINVLVDEVDD 388 Query: 424 EK--GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 E + +P + +V + + + GD ++VR+ D LY ELV Sbjct: 389 EGTIARSAADAPEIDGLVFINDHFDAEPGDFLRVRVVDADEHDLYAELVT 438 >gi|289432755|ref|YP_003462628.1| MiaB-like tRNA modifying enzyme [Dehalococcoides sp. GT] gi|288946475|gb|ADC74172.1| MiaB-like tRNA modifying enzyme [Dehalococcoides sp. GT] Length = 416 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 112/405 (27%), Positives = 190/405 (46%), Gaps = 33/405 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + + GC++N ++ M F GY V+ D+ D+ +LNTC + A K + RI Sbjct: 6 LDTLGCKLNQAETEAMGREFAQAGYHLVSPQDNWDIYILNTCTVTHVADRKA-RYQMRIA 64 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 N + + GC A+ EI P N+++ ++ Sbjct: 65 RRHNP------SGFICLTGCYAENGENEI--SCPDANLILD----------------NRQ 100 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 D ++ F + Y + R +F+ IQ+GCD FCT+C+VP+ R + R + Sbjct: 101 KTDIVNNIVRLFPLENSASALYEKGR-TRSFIKIQDGCDNFCTYCIVPFVRRYKNCRGVD 159 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++ E G EI L G + + G + + L+ ++ E + RLR ++ Sbjct: 160 DIISEINLRQAEGYQEIVLTGTEIGEYTSSGFN-----LAGLIEAILERTRIPRLRLSSL 214 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P +++ L+ + L + H+ +QSGSDRIL MNR ++ +Y + ++ IR PD Sbjct: 215 QPNEITLPLLALWKNRR-LCNHFHMALQSGSDRILGLMNRSYSLTDYTRTLEAIRRQIPD 273 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +A+++D IVGFPGETD+DF ++ V++ G+A+ F YS R GT S + ++VD V Sbjct: 274 VAVTTDTIVGFPGETDEDFACSLKYVEQAGFARVHPFPYSERPGTMASQLTDKVDPVVIK 333 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 RL + + + + EVL E K+ G G +P Sbjct: 334 TRLSGMMLAAKNASLEYRHQSRDLEKEVLWENKMKD-GLWFGYTP 377 >gi|304320388|ref|YP_003854031.1| hypothetical protein PB2503_04072 [Parvularcula bermudensis HTCC2503] gi|303299290|gb|ADM08889.1| hypothetical protein PB2503_04072 [Parvularcula bermudensis HTCC2503] Length = 384 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 113/401 (28%), Positives = 188/401 (46%), Gaps = 52/401 (12%) Query: 64 LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123 ++V+NTC + +A + + R R K+ + ++V+GC + + + + I Sbjct: 12 VVVINTCAVTNEAVRQSRQAIRRAR-------KDHPEAKLIVSGCAVETDRDRLAAMPEI 64 Query: 124 VNVV-----VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178 +++ + P++Y L R+ + V A Sbjct: 65 DHLIPNADKLKPESYAGATAPLSRS-----------------------------PQPVRA 95 Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238 L IQ GCD CTFC++P RG SR +++ V EA L+ G EI L G ++ ++ G Sbjct: 96 PLAIQNGCDHSCTFCIIPQGRGRAQSRPIAEAVAEAHALVAAGAREIVLTGVDLTSY-GD 154 Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 L+G + L+ + + LR ++ ++ D L + + D + PY HL +Q+G Sbjct: 155 DLEGGVTLADPIEVLLTSLPAAITLRLSSLDGAEVDDRLFRLLTEEDRVAPYAHLSLQAG 214 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 D LK M RRH + + DR+R+ RPD A +D I GFP ET++ F A++D + G Sbjct: 215 HDLTLKRMKRRHLTADAIDLTDRLRTARPDFAFGADLIAGFPTETEEMFAASLDHAARCG 274 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIE 415 A F +SPR+GTP + M Q+D V +A+RL L L + D +GQ + Sbjct: 275 LAFLHVFPFSPRVGTPAARM-PQIDRAVVKDRAKRLRALGDDLLAAHL---DRLIGQRVA 330 Query: 416 VLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRIT 456 VLIE+ L+GR P + + ++ G+ I +T Sbjct: 331 VLIEQ--TSGTHLIGRLPNFTEIEVEAEG-QAGERIMAHVT 368 >gi|326404964|ref|YP_004285046.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Acidiphilium multivorum AIU301] gi|325051826|dbj|BAJ82164.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Acidiphilium multivorum AIU301] Length = 411 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 109/350 (31%), Positives = 172/350 (49%), Gaps = 25/350 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + ++GC++N ++S M +G+ + DA +++NTC + +A + + R Sbjct: 5 ILTFGCRLNAFESEVM------RGHAEAAGLGDA--VIVNTCAVTAEAERQARQAIRRAH 56 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 R G ++V GC AQ + + V+ + PE R+ Sbjct: 57 -----RADPGAK--IIVTGCAAQIDPAAWSSIEGVARVLGNAEKLT--PEAW-RSEAPVL 106 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V D ++ + +++G R R AF+ +Q+GCD CTFC++PY RG S L Sbjct: 107 VADI---MQLRQTAAHLIEGFGTRAR---AFIEVQQGCDHRCTFCIIPYGRGPSRSIPLG 160 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 VV++ R L+ NG E+ L G ++ ++ G L G L+ + L RLR ++ Sbjct: 161 AVVEQVRTLVANGYNEVVLTGVDLTSY-GADLPGAPKLGQLCRRLLAAVPDLPRLRLSSI 219 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ D L + LMP+LHL VQ+GSD ILK M RRH + + R R++RPD Sbjct: 220 DPAEIDDDLWRLLESEPRLMPHLHLSVQAGSDLILKRMKRRHLRHHVIEAAVRARALRPD 279 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 IA+ +D I GFP ET+ F T+ LVD G F +S R GTP + + Sbjct: 280 IALGADLIAGFPTETEAHFAETLALVDDAGLDYLHVFPFSARKGTPAARI 329 >gi|293368846|ref|ZP_06615450.1| MiaB-like protein [Bacteroides ovatus SD CMC 3f] gi|292636151|gb|EFF54639.1| MiaB-like protein [Bacteroides ovatus SD CMC 3f] Length = 439 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 120/433 (27%), Positives = 212/433 (48%), Gaps = 29/433 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 +K+ VVV GC AQ + ++ + V+VV+G + L + L ++ G+ Sbjct: 73 ----VKQHPGAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + T + S D R R FL +Q+GCD FC++C +P+ RG + ++ Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++AR+ G EI L G N+ + GK GE +F DL+ +L +++G+ R R ++ Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVEGIERYRISS 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D +I+ MP+ H+P+QSG D +L+ M RR+ + + +I+ V P Sbjct: 237 IEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVKKIKEVMP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384 D I D IVG GET + F +D + Q F YS R GT ++ ++ Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + +++RLL L + + +F +GQ + VL+EK K + G + V + S + Sbjct: 357 HQRSQRLLALSDQKTQ---AFYARHIGQTMPVLMEK-SKAGAPMHGFTENYIRVEVESDD 412 Query: 445 HNIGDIIKVRITD 457 ++ VR+ D Sbjct: 413 SLDNQVVNVRLGD 425 >gi|295676480|ref|YP_003605004.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1002] gi|295436323|gb|ADG15493.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia sp. CCGE1002] Length = 480 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 129/473 (27%), Positives = 214/473 (45%), Gaps = 51/473 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS ++ ++GYE + + ADL+V+NTC ++A ++ Sbjct: 31 TPKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYNGADLVVVNTCGFIDEAVQESLD 89 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPE 138 +G N E G V+V GC+ A G ++ P V V GP + + Sbjct: 90 AIGEALN-------ENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQ 140 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + + K D F L + G A+L I EGC+ CTFC++P Sbjct: 141 AV-HSHLPKP--------HDPFVDL-VPAAGVKLTPRHYAYLKISEGCNHRCTFCIIPSM 190 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR +++V+ EA L +GV E+ ++ Q+ +A W GK + K Sbjct: 191 RGDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPI---KTRM 247 Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 +DL+ +L E+ VRL Y +P D ++ A ++PYL +P Q + Sbjct: 248 TDLVAALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAAGPYKGHVLPYLDVPFQHAHPEV 307 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 LK M R A + + + R + PD+ I S FI GFPGET++ F +D + + + Sbjct: 308 LKRMKRPANAEKVMERVKAWREICPDLTIRSTFIAGFPGETEEQFETLLDFIREAELDRV 367 Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 F YSP G + + + + V+ ER + + VG+ ++VL+++ Sbjct: 368 GCFAYSPVEGASANELDGALPDEVRGERRARFMEVAEQVSAKRIAKKVGKTLKVLVDEIN 427 Query: 423 KEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 + G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 428 ADGGIGRTAADAPEIDGVVYIAPSTKASKRYKVGDFVSVKITGADGHDLWGEV 480 >gi|222087519|ref|YP_002546056.1| hypothetical protein Arad_4404 [Agrobacterium radiobacter K84] gi|221724967|gb|ACM28123.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 424 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 119/403 (29%), Positives = 187/403 (46%), Gaps = 36/403 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M G + I++NTC + +A + Sbjct: 6 VITFGCRLNTYESEVMRAEAEKAGLN--------NAILVNTCAVTGEAVRQARQ------ 51 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142 ++ ++V GC AQ E + + V+ V+G + +Y LP+ Sbjct: 52 -AIRRARRDNPHARIIVTGCAAQTEKQTFAEMAE-VDAVLGNEEKLTSASYRSLPDFGVS 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A RV D + + +DG V AF+ +Q GCD CTFC++PY RG Sbjct: 110 AEEKLRVNDIMSVRHTAPQMVKHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT---FSDLLYSLSEIKG 259 S + VV +AR L+++G EI L G + ++ G L GE LL + EI+ Sbjct: 164 RSVPMGAVVSQARNLVESGYREIVLTGVDATSY-GGDLPGEPTLGLLAKTLLKQIPEIR- 221 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 RLR ++ + L+ D MP+LHL +Q G D ILK M RRH+ + + I Sbjct: 222 --RLRLSSIDSIEADAHLLDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHSRADAIRFI 279 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + +R +RP+++ +D I GFP ET F + L ++ A F YSPR GTP + M Sbjct: 280 EDVRRLRPEMSFGADMIAGFPTETGAMFENAVSLAEEAAIAHLHVFPYSPRPGTPAARM- 338 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 Q+D + ER L+ + + D+ VG +L+E +G Sbjct: 339 PQLDRALIKERAARLRAAGQRLHQAHLDSMVGTRQWLLVENNG 381 >gi|281425800|ref|ZP_06256713.1| 2-methylthioadenine synthetase [Prevotella oris F0302] gi|281400061|gb|EFB30892.1| 2-methylthioadenine synthetase [Prevotella oris F0302] Length = 446 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 117/405 (28%), Positives = 193/405 (47%), Gaps = 33/405 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ M G ++AD+ ++NTC + + A K + R+ Sbjct: 16 TLGCKLNFSETSTFGKMLSDMGVVTAAKGEEADICLINTCSVTDVADHKCRQAIHRM--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E ++V GC AQ E E + + P V++V+G L + L A F R Sbjct: 73 ----VRENPGAFIIVTGCYAQLESERV-SKIPGVDLVLGSNEKANLIQYLNDA-FIDRTA 126 Query: 151 DTDYSVEDKFERLSIVD-----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 T + K+ + D +R FL +Q+GC+ FCT+C +PY RG + Sbjct: 127 GT---AQHKYHAVRTKDIKTFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFSRNP 183 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC--TFSDLLYSLSEIKGLVRL 263 S++ +V +A + G EI L G N+ + GE F DL+ +L +++G+ R Sbjct: 184 SIASLVAQAEEAAAEGGKEIVLTGVNIGHF------GETTHEKFIDLVKALDKVEGIKRF 237 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ P + D LI + MP+ H+P+QSGSD +LK M+RR+ + I+ I+ Sbjct: 238 RISSLEPDLIDDDLIAFCAESRAFMPHFHIPLQSGSDAVLKLMHRRYDTALFAHKIELIK 297 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LE 380 + PD I D +VG GE + F + + Q F YS R GT ++ +E Sbjct: 298 KLMPDAFIGVDVMVGSRGEKPEYFEDCYQFLAHLPVTQLHVFPYSERPGTSALSIPYVVE 357 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGK 423 + D+ ++++RLL L + F +G EVL EK HGK Sbjct: 358 EKDKKLRSKRLLALSDT---KTQDFYQQFIGTEREVLFEKAPHGK 399 >gi|168180715|ref|ZP_02615379.1| RNA modification enzyme, MiaB family [Clostridium botulinum NCTC 2916] gi|226949759|ref|YP_002804850.1| RNA modification enzyme, MiaB family [Clostridium botulinum A2 str. Kyoto] gi|182668451|gb|EDT80430.1| RNA modification enzyme, MiaB family [Clostridium botulinum NCTC 2916] gi|226843731|gb|ACO86397.1| RNA modification enzyme, MiaB family [Clostridium botulinum A2 str. Kyoto] Length = 445 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 131/441 (29%), Positives = 222/441 (50%), Gaps = 37/441 (8%) Query: 31 SYGCQMNVYDSLRMEDMFF--SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 S GC N DS E M + ++ E V + +A +I++NTC E A E+ + + ++ Sbjct: 10 SLGCDKNRIDS---ELMLYKLNEEAELVKNPKEAQVIIVNTCGFIETAKEESINTILQMA 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGK 147 + K + ++VV GC+ Q E+ P +++++G Y +L E ++ + G+ Sbjct: 67 SYKKTH----NCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLKSGE 122 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + S K+ I +G NR TA++ I EGC+ FCT+C +P RG S Sbjct: 123 K------SFYHKYSDTKINEG--NRILTTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ E L GV EI L+ Q+ + G + G+K +LL +S+++G+ +R Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTMY-GIDIYGKK-VLHELLRDISKVEGVKWIR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P +++ LI+ + D + YL LP+Q S+ +LK M R+ T II ++R Sbjct: 233 LLYCYPEEITKELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD- 383 I + + IVGFPGET+ +F + V + + FKYS GT + M EQ+D Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDVKLDKLGVFKYSKEEGTSAALMKEQIDE 352 Query: 384 --ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437 + + E ++ LQ+ + + N +G+I EV++E G ++ GR SP + Sbjct: 353 EIKEKREEEIMILQQSISK---DINKEKIGKIYEVIVE--GTKEDMYYGRNYEMSPEIDG 407 Query: 438 VVLNSKNHN--IGDIIKVRIT 456 + K+ N IGDIIKV++T Sbjct: 408 EIYFEKDENVKIGDIIKVKVT 428 >gi|14521928|ref|NP_127405.1| hypothetical protein PAB1134 [Pyrococcus abyssi GE5] gi|14916852|sp|Q9UXX9|Y1729_PYRAB RecName: Full=Putative methylthiotransferase PYRAB17290 gi|5459148|emb|CAB50634.1| Hypothetical protein, UPF0004 family [Pyrococcus abyssi GE5] Length = 425 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 131/452 (28%), Positives = 227/452 (50%), Gaps = 39/452 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGC N D M + G+E V D+ +++V+N+C +++ K+ Sbjct: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIAR--- 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI+ L +S K V+V GC+ + I R V+ ++G ++ R+ + +E A Sbjct: 60 RIKELLDSGKK------VIVTGCLPHVNPDVIDER---VSGILGVKSIDRIIQAVEYALR 110 Query: 146 GKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++++ SV D +R L +D R V + I EGC CT+C + RG+ S Sbjct: 111 GEKLI----SVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKS 166 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 S ++V + I G EI L ++ + G D + LL ++ I+G R+R Sbjct: 167 YSPEKIVGWVKWAIKQGYKEIWLSAEDTGCY---GFD-IGTNLAKLLDEITAIEGEFRVR 222 Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +P + D LI+A+ D + + +LHLPVQSG + IL+ M R +T E+ +I+ Sbjct: 223 VGMMNPNHVLKFLDELIEAYQD-EKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKE 281 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R PD+ + +D IVGFPGE D+ F+ +++L+ +I + +YSPR GT + +Q Sbjct: 282 FRKKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKW-KQ 340 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + + ER L + + N +G+ +EVLI GK KG + +V +N Sbjct: 341 LPGWIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGK-KGN-------VDAVTMN 392 Query: 442 SKN--HNIGDIIKVRITDVKIST---LYGELV 468 K+ G+ + RI ++K +T L GE++ Sbjct: 393 YKHVILPFGNSGEFRIAEIKNATSTYLLGEVM 424 >gi|167764860|ref|ZP_02436981.1| hypothetical protein BACSTE_03252 [Bacteroides stercoris ATCC 43183] gi|167697529|gb|EDS14108.1| hypothetical protein BACSTE_03252 [Bacteroides stercoris ATCC 43183] Length = 440 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 121/427 (28%), Positives = 204/427 (47%), Gaps = 17/427 (3%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G V + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKVLREAGVRTVRKGEKADICVVNTCSVTEVADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K+ VVV GC AQ + + + + V+VV+G + L + L R + Sbjct: 73 ----VKQHPGAFVVVTGCYAQLKPDAVAKIEG-VDVVLGAEQKKDLLQYLGDLRKHESGE 127 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +++D + +R FL +Q+GCD +C++C +P+ RG + S++ + Sbjct: 128 AHTSALKD----IRSFAPSCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGSIASL 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++AR+ G EI L G N+ + GK GE TF DL+ +L +++ + R R ++ P Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDDVECIERYRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I+ MP+ H+P+QSGSD +LK M RR+ + + RI+ V PD Sbjct: 240 NLLTDEIIEFVSRSKRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKVKRIKEVMPDAF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I D IVG GET++ F + + Q F YS R GT + V K R Sbjct: 300 IGVDVIVGTRGETEEYFEQAYRFIQSLDVTQLHVFSYSERPGTQALKIEHVVSSEEKHRR 359 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDI 450 L E+ +F +GQ + VL+E+ K + G +P V + + + Sbjct: 360 SRLLLDLSDEKTRAFYARHIGQTMPVLLER-SKPGTPMHGFTPNYIRVEVPHDDALDNQV 418 Query: 451 IKVRITD 457 I VR+ D Sbjct: 419 IPVRMGD 425 >gi|91215250|ref|ZP_01252222.1| putative Fe-S oxidoreductase [Psychroflexus torquis ATCC 700755] gi|91186855|gb|EAS73226.1| putative Fe-S oxidoreductase [Psychroflexus torquis ATCC 700755] Length = 440 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 134/463 (28%), Positives = 225/463 (48%), Gaps = 45/463 (9%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 + I + V + GC N+YDS + + G E V + D++V+NTC + A E+ Sbjct: 4 KSIKKNKINVVTLGCSKNIYDSEILMGQLKANGKE-VAHETEGDIVVINTCGFIDNAKEE 62 Query: 80 -VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 V + L ++ + +K V V GC+++ ++ + P V+ G LP Sbjct: 63 SVNTILDFVQKKEKGEVK-----KVFVTGCLSERYKPDLQKEIPDVDQYFGTT---ELPA 114 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 LL + + DY E ER++ Y AFL I EGCD+ C+FC +P Sbjct: 115 LL-------KALGADYKHELIGERITTTPKNY-------AFLKIAEGCDRPCSFCAIPLM 160 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEI 257 RGI S + +V E++ L NGV E+ L+ Q++ + GLD +K ++LL L ++ Sbjct: 161 RGIHRSTPIEDLVKESKSLAANGVKELILIAQDLTYY---GLDLYKKRNLAELLRELVKV 217 Query: 258 KGL--VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 +G+ +RL Y T P D+ D + + + Y+ +P+Q SD ILKSM R T Sbjct: 218 EGIEWIRLHYAFPTGFPVDVLDVIREEPK----VCNYIDIPLQHISDHILKSMRRGTTHK 273 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + ++ + R P + I + IVG+PGET++DF V+++ + + F YS T Sbjct: 274 KTTDLLIKFRKEVPLMTIRTTLIVGYPGETEEDFEELKQWVEEMRFERLGCFTYSHEENT 333 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 N+ + V E VK +R + + + N +G+ + +I++ KE VGR+ Sbjct: 334 HAYNLEDDVPEEVKMQRANEIMEIQSQISWELNQQKIGKTFKCVIDR--KEGNYFVGRTE 391 Query: 434 W-----LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 + V+++SK H + GD ++IT+ LYGE V+ Sbjct: 392 YDSPDVDNEVLIDSKLHYLKTGDFAHIKITEAADFDLYGEPVL 434 >gi|21218120|dbj|BAB96555.1| putative fructokinase-like protein [Pseudomonas putida] Length = 536 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 130/485 (26%), Positives = 215/485 (44%), Gaps = 65/485 (13%) Query: 18 VDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 + P+ FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A Sbjct: 82 ISSSAAPKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAV 140 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTY 133 ++ +G N E G V+V GC+ A G ++ P V V GP Sbjct: 141 QESLDAIGEALN-------ENGK--VIVTGCLGAKKSASGTGLIEEVHPKVLAVTGPHAT 191 Query: 134 YRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193 + + A K D F L + G A+L I EGC+ CTFC Sbjct: 192 NEVMNAVH-AHLPKP--------HDPFTDL-VPAAGIKLTPRHYAYLKISEGCNHRCTFC 241 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDG 242 ++P RG +SR ++ V+ EA L +GV E+ ++ Q+ +A W GK + Sbjct: 242 IIPSMRGDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPV-- 299 Query: 243 EKCTFSDLLYSLSEIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLH 292 K +DL+ +L E+ VRL Y +P M++ +K H ++PYL Sbjct: 300 -KTRMTDLVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGALKGH-----VLPYLD 353 Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 +P Q +LK M R A + + + R + PD+ I S FI GFPGET++ F +D Sbjct: 354 VPFQHAHPEVLKRMKRPANAEKVLERVQAWRKICPDLTIRSTFIAGFPGETEEQFETLLD 413 Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412 + + F YSP G + + + + V+ ER + E + +G+ Sbjct: 414 FIRVADLDRVGCFAYSPVEGASANELDGALPDEVREERRARFMELAEELSAARMKRKIGK 473 Query: 413 IIEVLIEKHGKEKGKLVGRSP----------WLQSVVLNSKNHNIGDIIKVRITDVKIST 462 ++VL+++ + G +GR+ ++ V S+ + GD + V+I+ Sbjct: 474 TLKVLVDEVNADGG--IGRTAADAPEIDGVVYIAPAVKASRRYKAGDFVSVKISGADGHD 531 Query: 463 LYGEL 467 L+GE+ Sbjct: 532 LWGEV 536 >gi|260885593|ref|ZP_05735307.2| 2-methylthioadenine synthetase [Prevotella tannerae ATCC 51259] gi|260851662|gb|EEX71531.1| 2-methylthioadenine synthetase [Prevotella tannerae ATCC 51259] Length = 524 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 119/420 (28%), Positives = 203/420 (48%), Gaps = 25/420 (5%) Query: 19 DQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE 78 D + ++ ++ GC++N ++ + D G V + + AD+ ++NTC + + A Sbjct: 85 DSLLAGKKAAFQTLGCKLNFAETSSLRDTLARYGVSPVEAGETADICIVNTCSVTDVADH 144 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 K + R+ +E D VVV GC AQ + E+I R P V++V+G + + Sbjct: 145 KCRQAIHRL-------TREHPDAFVVVLGCYAQLQPEKIAR-FPGVDLVIGMEQKGDVVR 196 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVD-----GGYNRKRGVTAFLTIQEGCDKFCTFC 193 + ++ ++ ++ L D ++ FL +Q+GC+ +CT+C Sbjct: 197 YIREGLAQRQALEKGENIHAAIA-LPTRDVRTFVPSCSKGDRTRYFLKVQDGCNYYCTYC 255 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 +P RG + +++ +V +A + G EI L G N + G+ GE TF L+ + Sbjct: 256 TIPLARGRSRNGTIASLVGQAEAVAAEGGKEIVLTGVNTGDF-GRST-GE--TFFQLIQA 311 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 L +KG+ R R ++ P ++D +I MP+ H+P+QSGSD +L+ M RR+ Sbjct: 312 LDRVKGIERYRISSIEPNLLTDEIIDFCAQSRAFMPHFHIPLQSGSDDVLRLMRRRYDTE 371 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 +R+ I+++R+ PD I D IVG GETD F ++ I ++ F YS R GT Sbjct: 372 LFRRKIEKVRAAIPDAFIGVDVIVGTRGETDAFFEDAYKFIEDIDISRLHVFSYSERPGT 431 Query: 374 PGSNMLEQVDENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 + VD K ++RLL L + E++ +F +G VL E H KE L G Sbjct: 432 QALQIPHVVDAQTKQARSKRLLALSE---EKRKAFFRRFIGTERPVLWE-HSKEGRPLHG 487 >gi|148251981|ref|YP_001236566.1| putative MiaB-like tRNA modifying enzyme [Bradyrhizobium sp. BTAi1] gi|146404154|gb|ABQ32660.1| putative MiaB-like tRNA modifying enzyme [Bradyrhizobium sp. BTAi1] Length = 434 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 123/370 (33%), Positives = 183/370 (49%), Gaps = 35/370 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N ++S + + G +D IV+N+C + +A + IR Sbjct: 5 VVTFGCRLNAFESELIARHAEAAGA--------SDTIVINSCAVTNEAVAQARQT---IR 53 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL------PELLER 142 LK R +VV GC AQ + + P V+ V+G + +L + L Sbjct: 54 KLKRERPAA----RIVVTGCAAQTQAG-MFADMPEVDRVMGNEDKLQLDAWRATAQALAP 108 Query: 143 ARFG-----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVP 196 RFG K V +V + L V+G +RG+ F+ +Q GCD CTFC++P Sbjct: 109 PRFGIDTSEKVAVSDIMAVTEMAPHL--VEG---FQRGLPRVFVQVQNGCDHRCTFCIIP 163 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 + RG S + VVD+ R L G EI L G ++ ++ G L G + L Sbjct: 164 FGRGNSRSVPMGAVVDQVRALAARGHAEIVLTGVDLTSY-GHDLPGTPKLGRLVKQILRH 222 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + L RLR ++ + L+ A D LMP+LHL +Q+G D ILK M RRH+ + Sbjct: 223 VPELQRLRISSIDSIEADADLLDALADDARLMPHLHLSLQAGDDLILKRMKRRHSRADAV 282 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 D +R +RPDIA+ +D I GFP ET+D F +++LV++ G A F YSPR GTP + Sbjct: 283 AFCDHVRLLRPDIALGADLIAGFPTETEDMFVRSLELVEECGLAFLHVFPYSPRPGTPAA 342 Query: 377 NMLEQVDENV 386 M QVD V Sbjct: 343 RM-PQVDGAV 351 >gi|163755928|ref|ZP_02163045.1| 2-methylthioadenine synthetase [Kordia algicida OT-1] gi|161324099|gb|EDP95431.1| 2-methylthioadenine synthetase [Kordia algicida OT-1] Length = 435 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 126/450 (28%), Positives = 220/450 (48%), Gaps = 37/450 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87 V + GC NVYDS + + G E V ++ +++V+NTC I E V + L + Sbjct: 13 VVTLGCSKNVYDSEVLMGQLKANGKE-VAHEEEGNIVVINTCGFINNAKEESVNTILDYV 71 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 ++ +EG V V GC+++ ++ P V+ G LP LL Sbjct: 72 -----NKKEEGVVDKVFVTGCLSERYKPDLEAEIPDVDQYFGTSD---LPRLL------- 116 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + + DY E ER++ Y A+L I EGCD+ C+FC +P RG S+ + Sbjct: 117 KALGADYKHELIGERITTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGKHKSKPI 169 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 ++V+E KL GV E+ L+ Q++ + GLD +K ++LL +L +++G+ +R Sbjct: 170 EELVEETEKLAAKGVKELILIAQDLTYY---GLDLYKKRNLAELLQNLVKVEGIEWIRLH 226 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P +++ + + YL +P+Q +D ILKSM R + +++ R+ Sbjct: 227 YAFPAGFPMDVLEVMNNEPKICNYLDIPLQHIADDILKSMRRGTNQAKTTKLLKEFRAAV 286 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P++ I + IVG+PGET++ F+ + V ++ + + F YS T N+ + V E V Sbjct: 287 PNMTIRTTLIVGYPGETEEHFQTLKNWVQEMRFERLGCFTYSHEENTHAYNLEDDVPEEV 346 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS-VVLN 441 K +R + + + N +GQ + +I++ KE VGR SP + + V+++ Sbjct: 347 KQDRANQIMEIQSQISWELNQEKIGQTFKCIIDR--KEGNYFVGRTEFDSPDVDNEVLID 404 Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELVV 469 + + G+ + V+ITD LYGE V Sbjct: 405 AAKFYVKQGEFVDVKITDAADFDLYGEPAV 434 >gi|14917063|sp|O59545|Y1875_PYRHO RecName: Full=Putative methylthiotransferase PH1875 Length = 425 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 124/447 (27%), Positives = 224/447 (50%), Gaps = 29/447 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGC N D M + + G+E V S ++++++V+N+C +++ K+ Sbjct: 3 KVYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIAR--- 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIR L ++ K V+V GC+ + I R V+ ++G ++ R+ + +E A Sbjct: 60 RIRELLDNGKK------VIVTGCLPHVNPDVIDER---VSAILGVKSIDRIVQAVEYAMR 110 Query: 146 GKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++++ SV D +R L +D R V L I EGC CT+C RG+ S Sbjct: 111 GEKLI----SVPDWKKRNLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKS 166 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 S +++ + I G EI L ++ + G D + L+ ++ I+G R+R Sbjct: 167 YSPEKIIGWVKWAIKQGYKEIWLSAEDTGCY---GFDI-GTNLAKLIDEITAIEGEFRIR 222 Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +P + D LI A+ D V +LHLPVQSG + IL+ M R +T E+ +I+ Sbjct: 223 VGMMNPNHVLKFLDELIDAYKDEKVYK-FLHLPVQSGDNEILRKMGRMYTVEEFEEIVKA 281 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R P++ + +D IVGFPGE+++ F+ +++L+ +I + +YSPR GT + +Q Sbjct: 282 FRREFPELNLHTDIIVGFPGESEEAFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKW-KQ 340 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + V ER L + + N +G+ ++VLI GK KG + + + ++L Sbjct: 341 LPGWVVKERSRLLHRIRLQISYEINRKYIGKKVKVLIHGEGK-KGNVDAVTMNYKHIILP 399 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 G+ + R+ + + L GE++ Sbjct: 400 EGRK--GEFREARVKNAASTYLLGEII 424 >gi|319407864|emb|CBI81517.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 427 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 116/372 (31%), Positives = 182/372 (48%), Gaps = 33/372 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S + S G + I+ NTC + AE V IR Sbjct: 7 TFGCRLNSYESEIIRKESTSAGLNELK----GGAIIFNTCAV---TAEAVRQAKQAIRKA 59 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEI-LRRSPIVNVVVG------PQTYYRLPELLERA 143 K ++ ++V GC AQ E + L + V++++G +Y +LP+ Sbjct: 60 K----RKNPHARIIVTGCAAQTEAKNFSLMKE--VDLILGNEEKLHAHSYRQLPD----- 108 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIE 202 FG D V D E I N G T AF+ +Q GCD CTFC++PY+RG Sbjct: 109 -FGINH-DEKLRVNDIMEVHKIAPHMINALEGRTRAFVQVQNGCDHRCTFCIIPYSRGRS 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLV 261 S + ++++ ++LI NG+ EI L G ++ ++ G L G K T L+ + L + L Sbjct: 167 RSVPMGIIIEQIKQLIGNGIQEIVLTGVDLTSY-GPDLPG-KITLGKLVSTILHHVPDLP 224 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ + LI +MP+LHL +Q+G + ILK M RRH Q Sbjct: 225 RLRLSSIDSIEADQELINLLAYEKRIMPHLHLSLQAGDNMILKRMKRRHMRENAIQFCQD 284 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RP I +D I GFP ET++ F+ ++ L+ + G F +SPR GTP + M + Sbjct: 285 LRAKRPTIVYGADLIAGFPTETEEMFQNSLALIHECGLTHLHVFPFSPREGTPAARMPQI 344 Query: 382 VDE--NVKAERL 391 E ++AE+L Sbjct: 345 SREIIKIRAEKL 356 >gi|41055309|ref|NP_956921.1| CDK5 regulatory subunit-associated protein 1-like 1 [Danio rerio] gi|82187245|sp|Q6PG34|CDKAL_DANRE RecName: Full=CDK5 regulatory subunit-associated protein 1-like 1 gi|34784048|gb|AAH57248.1| CDK5 regulatory subunit associated protein 1-like 1 [Danio rerio] Length = 547 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 128/456 (28%), Positives = 218/456 (47%), Gaps = 45/456 (9%) Query: 16 QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 Q+ ++P Q+ ++K++GC N D M GY+ DADL +LN+C ++ Sbjct: 48 QMQTDSVIPGMQKVWLKTWGCSHNSSDGEYMAGQLAVAGYQITEDSSDADLWLLNSCTVK 107 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQT 132 A + F IR + K VV+AGCV QA+ R I ++ ++G Q Sbjct: 108 SPAEDH---FRNAIRKAQEQNKK------VVLAGCVPQAQP----RMDYIKDLSIIGVQQ 154 Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFC 190 R+ E+++ A G V E K +RL + +D RK + ++I GC C Sbjct: 155 IDRVVEVVDEAIKGHSVRLLGQKKE-KGKRLGGARLDLPKIRKNPLIEIISINTGCLNAC 213 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSD 249 T+C + RG S + ++V+ R+ GVCEI L ++ A+ R G D Sbjct: 214 TYCKTKHARGDLASYPVEELVERVRQSFQEGVCEIWLTSEDTGAYGRDIGSD-----LPT 268 Query: 250 LLYSL-SEIK-------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301 LL+ L EI G+ Y H +MS L + +LH+P+QS SD Sbjct: 269 LLWRLVEEIPEGAMLRLGMTNPPYILEHLEEMSRILQHPR-----VFSFLHVPLQSASDS 323 Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361 +L M R + ++ ++D ++ P I I++D I GFPGETD+DF T+ LV + + Sbjct: 324 VLMEMRREYCCADFTHLVDYLKERVPGITIATDIICGFPGETDEDFEQTLALVRRYRFPS 383 Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIE 419 F ++ PR GTP + +++Q+ +VK +R K+L S+ D +G+ +VL+ Sbjct: 384 LFINQFYPRPGTPAA-LMQQLPAHVKKQRT----KELSALFHSYRPYDHKMGEQQQVLVT 438 Query: 420 KHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455 + + V + + + V++ + +G +++V + Sbjct: 439 EESFDSQYYVAHNKFYEQVLVPKRPEYLGKMVQVEV 474 >gi|168187897|ref|ZP_02622532.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] gi|169294251|gb|EDS76384.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] Length = 444 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 126/439 (28%), Positives = 222/439 (50%), Gaps = 30/439 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + S+ + VN + AD+I++NTC E + ++ + L Sbjct: 10 SLGCDKNRIDSELLLGKL-SEKNDIVNDPNKADIIIVNTCGFIESSKQESIDTI-----L 63 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + ++ KE +++ GC+ Q + + P +++++G Y + +E Sbjct: 64 EMAKYKEKKCKMIIATGCLTQRYSKNLQELIPEIDIMLGVNDYANIQNYIEDF-----FS 118 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + E K+ +SI +G KR +T A++ I EGCD CT+C++P RG SR Sbjct: 119 ENNRICECKYSDISINEG----KRILTTAKHMAYIRISEGCDNLCTYCIIPKIRGKYRSR 174 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 SL +++EA++L + GV E+ L+GQ+ A G L E+ S LL LS I+ + +R Sbjct: 175 SLESIINEAKELANMGVKELILVGQDT-AIYGSDL-YEENKLSTLLKELSNIEDIEWIRV 232 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P +++D LI+ + D + YL +P+Q S+ +LK MNR+ + I ++R Sbjct: 233 LYTYPEEITDELIEEIKNNDKVCKYLDIPIQHISNTVLKRMNRKSSKELITNNIKKMREE 292 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 + + + IVGFPGET+++F + + I + FKYS T + M Q++E Sbjct: 293 IKGLCLRTSIIVGFPGETEEEFNELEEFIKDIEFNNLGVFKYSQEEDTAAARMKGQINEK 352 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVVL- 440 +K +RL + ++ N +G++ +VL+E G+ VGR+ P + + Sbjct: 353 IKDKRLETIMSIQQKVSSKINKNKLGKMYKVLVE--GQNDKYYVGRNYQMVPEIDGAIFF 410 Query: 441 -NSKNHNIGDIIKVRITDV 458 K NIG+ + V+ITD Sbjct: 411 KCDKILNIGEFVYVKITDT 429 >gi|53715140|ref|YP_101132.1| putative Fe-S oxidoreductase [Bacteroides fragilis YCH46] gi|52218005|dbj|BAD50598.1| putative Fe-S oxidoreductase [Bacteroides fragilis YCH46] Length = 439 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 114/393 (29%), Positives = 195/393 (49%), Gaps = 22/393 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + ADL ++NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADLCIVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K+ VVV GC AQ + ++ + V+VV+G + L + L K Sbjct: 73 ----VKQHPGAFVVVTGCYAQLKPGDVAKIEG-VDVVLGAEQKKDLLQYL--GDLHKHEG 125 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y+ K + +R FL +Q+GCD FC++C +P+ RG + +++ + Sbjct: 126 GEAYTTATK--DIRSFAPSCSRGDRTRFFLKVQDGCDYFCSYCTIPFARGRSRNGTIASL 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++AR+ G EI L G N+ + GK GE TF DL+ +L ++G+ R R ++ P Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDRVEGIERYRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I+ MP+ H+P+QSGSD +L+ M RR+ + I +I+ V PD+ Sbjct: 240 NLLTDEIIEYVSRSRSFMPHFHIPLQSGSDEVLQLMRRRYGTELFASKIAKIKEVMPDVF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDENVK 387 I D IVG GET F + + + Q F YS R GT +++ +++ + Sbjct: 300 IGVDVIVGTRGETAGYFEKAYEFIHGLDVTQLHVFSYSERPGTQALKIDHVVTPEEKHQR 359 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 ++RLL L E+ +F +GQ + VL+EK Sbjct: 360 SQRLLALSD---EKTKAFYARYIGQTMPVLMEK 389 >gi|14591622|ref|NP_143704.1| hypothetical protein PH1875 [Pyrococcus horikoshii OT3] gi|3258314|dbj|BAA30997.1| 432aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 432 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 124/447 (27%), Positives = 224/447 (50%), Gaps = 29/447 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGC N D M + + G+E V S ++++++V+N+C +++ K+ Sbjct: 10 KVYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIAR--- 66 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIR L ++ K V+V GC+ + I R V+ ++G ++ R+ + +E A Sbjct: 67 RIRELLDNGKK------VIVTGCLPHVNPDVIDER---VSAILGVKSIDRIVQAVEYAMR 117 Query: 146 GKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++++ SV D +R L +D R V L I EGC CT+C RG+ S Sbjct: 118 GEKLI----SVPDWKKRNLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKS 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 S +++ + I G EI L ++ + G D + L+ ++ I+G R+R Sbjct: 174 YSPEKIIGWVKWAIKQGYKEIWLSAEDTGCY---GFDI-GTNLAKLIDEITAIEGEFRIR 229 Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +P + D LI A+ D V +LHLPVQSG + IL+ M R +T E+ +I+ Sbjct: 230 VGMMNPNHVLKFLDELIDAYKDEKVYK-FLHLPVQSGDNEILRKMGRMYTVEEFEEIVKA 288 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R P++ + +D IVGFPGE+++ F+ +++L+ +I + +YSPR GT + +Q Sbjct: 289 FRREFPELNLHTDIIVGFPGESEEAFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKW-KQ 347 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + V ER L + + N +G+ ++VLI GK KG + + + ++L Sbjct: 348 LPGWVVKERSRLLHRIRLQISYEINRKYIGKKVKVLIHGEGK-KGNVDAVTMNYKHIILP 406 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 G+ + R+ + + L GE++ Sbjct: 407 EGRK--GEFREARVKNAASTYLLGEII 431 >gi|87198868|ref|YP_496125.1| hypothetical protein Saro_0846 [Novosphingobium aromaticivorans DSM 12444] gi|123736270|sp|Q2GA32|RIMO_NOVAD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|87134549|gb|ABD25291.1| SSU ribosomal protein S12P methylthiotransferase [Novosphingobium aromaticivorans DSM 12444] Length = 471 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 136/491 (27%), Positives = 221/491 (45%), Gaps = 60/491 (12%) Query: 8 IGVAHMVSQIVDQCI--VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLI 65 +G A M SQI + I P+ V S GC + DS R+ + GY AD++ Sbjct: 1 MGRAKMASQIPPREIPEAPKVGMV-SLGCPKALVDSERILTRLRADGYAMSADYAGADVV 59 Query: 66 VLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN 125 ++NTC + A E+ S +G I E G V+V GC+ E E I + P V Sbjct: 60 LVNTCGFLDSAKEESLSAIGEA-------IAENGR--VIVTGCMGN-EAEAIRAKFPQVL 109 Query: 126 VVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185 V G Y + E + A D + + + Y+ +L I EG Sbjct: 110 AVTGAHQYEAVVEAVHEAAPPSMGPYIDLIPQADPGDVKLTPRHYS-------YLKISEG 162 Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA----------- 234 C+ C FC++P RG SR + V+ EA KL+ G E+ ++ Q+ +A Sbjct: 163 CNHACAFCIIPSLRGKLASRRIDAVLREAEKLVAAGTKELLVISQDTSAYGVDVRHEERM 222 Query: 235 WRGKGLDGEKCTFSDLLYSLSEIK------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288 W+G+ + + +DL L +++ VRL Y +P + + A G ++ Sbjct: 223 WKGRPV---RTHMTDLARELGQLRTPQGETPWVRLHYVYPYPHVDAVIPLMAEG---LVT 276 Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348 PYL +P Q S +L++M R + + I R + PD+AI S F+VGFPGET DF Sbjct: 277 PYLDIPFQHASPNVLRAMKRPANEAKVLERIKAWREICPDLAIRSSFVVGFPGETQADFE 336 Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408 ++ +++ + F++ P G +++ +QV E +K ER L +K + A Sbjct: 337 YLLEWLEEAQLDRVGGFRFEPVAGAAANDLPDQVPEEIKEERYARLMEKTEAISAARLSA 396 Query: 409 CVGQIIEVLIEKHGK--EKGKL--VGRSP----------WLQSVVLNSKNHNIGDIIKVR 454 VG+ I+V++++ G+ E G + RS +L++V + K GD +V Sbjct: 397 KVGRHIKVIVDEVGEPDEDGDIGATARSQADAPEIDGAVYLRNVPASLKP---GDFAEVL 453 Query: 455 ITDVKISTLYG 465 + D LYG Sbjct: 454 VEDADAHDLYG 464 >gi|148700454|gb|EDL32401.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_a [Mus musculus] Length = 444 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 111/377 (29%), Positives = 184/377 (48%), Gaps = 35/377 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 63 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 119 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K VV+AGCV QA+ + + ++G Q R+ E++E Sbjct: 120 NSIKKAQEENKK------VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V +D +RL + +D RK + ++I GC CT+C + RG Sbjct: 171 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257 S + ++V+ A++ GVCEI L ++ A+ R G D LL+ L E+ Sbjct: 230 ASYPIDELVERAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 284 Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 G+ Y H +M+ L + +LH+PVQS SD +L M R + Sbjct: 285 AMLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMDMKREYCVA 339 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 ++++++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ PR GT Sbjct: 340 DFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGT 399 Query: 374 PGSNMLEQVDENVKAER 390 P + EQV +VK +R Sbjct: 400 PAAKA-EQVPAHVKKQR 415 >gi|295100395|emb|CBK97940.1| MiaB-like tRNA modifying enzyme [Faecalibacterium prausnitzii L2-6] Length = 431 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 120/445 (26%), Positives = 221/445 (49%), Gaps = 27/445 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N+ ++ +E MF S G+ V ++AD+ V+N+C + +K +L R + Sbjct: 7 TLGCKVNLNETGALEQMFRSAGFTIVPEGEEADVFVVNSCTVTNFGDQKSRKWLRRAK-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +E + V+ GC QA EE + V L +L+ +R+V Sbjct: 65 -----RENPGAVTVLTGCYPQAFPEEAAQFMEADLVCGNGDRKAILDNVLKLLDGHERIV 119 Query: 151 D-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 ++ ++FE L + + + AF+ +++GC++ C +CV+P RG SRS Sbjct: 120 AIAPHAKGERFEELPVERFETHTR----AFIKVEDGCNRQCAYCVIPRARGPVRSRSEES 175 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 ++ E R+L +G E+ L ++ ++ GLD +L+ + ++G+ R+R + Sbjct: 176 ILAELRQLAASGYREVVLSAISLPSY---GLD-TGTNLVELVEKCARVEGIERIRLGSLD 231 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD- 328 P ++ I +D L P HL +QSG L+ M R +TA +Y +++ ++R+ D Sbjct: 232 PDMLTPESITRLAAVDKLCPQYHLSLQSGCSATLRRMRRVYTAEQYAEVVRQLRAAYGDR 291 Query: 329 -IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 ++ ++D I GFPGET++DFR + + +IG+ + F YS R GTP + +QV E K Sbjct: 292 PVSFTTDCICGFPGETEEDFRESCAFLKEIGFLKVHVFPYSRRSGTPAYDFPDQVHEREK 351 Query: 388 AER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVLNSK 443 R + + + +R + ++ C G +VL+E G L G + VV+++ Sbjct: 352 QARSREMNAIAEDIRREVLA---GCEGSEDDVLLET--PLSGTLFTGYTRLYVPVVVSAP 406 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 H G+I+ VR+ + E+V Sbjct: 407 GHKSGEIVHVRLGSYDGERVRAEMV 431 >gi|299140825|ref|ZP_07033963.1| 2-methylthioadenine synthetase [Prevotella oris C735] gi|298577791|gb|EFI49659.1| 2-methylthioadenine synthetase [Prevotella oris C735] Length = 433 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 123/452 (27%), Positives = 213/452 (47%), Gaps = 43/452 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS + F + GY V+ D ++ V+NTC E A E+ + + Sbjct: 10 TMGCSKNLVDSEHLMKQFEANGYHCVHDSKRPDGEIAVINTCGFIESAKEESINTILEFV 69 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--- 145 + KN EG + V GC++Q +E+ + P V+ G Y +L L +A Sbjct: 70 HAKN----EGRLKRLYVMGCLSQRYKDELEKEIPEVDKFYGKFNYKQLLTDLGKAEVPSC 125 Query: 146 -GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+R + T A++ I EGCD+ C +C +P G +S Sbjct: 126 NGRRHLTTPRHY---------------------AYVKIAEGCDRHCAYCAIPLITGKHVS 164 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ E R+L+++GV E ++ Q + + G +DG++ +DL+ +++IKG+ +R Sbjct: 165 RPKEDILQEVRELVNDGVKEFQIIAQELTYY-GVDIDGQR-HIADLISDMADIKGVKWIR 222 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++P L+ + + YL + +Q S+ +L +M+R + E ++I +IR Sbjct: 223 LHYAYPNQFPLELLDVIREKPNVCKYLDIALQHISNHMLNAMHRHVSKEETIELIKKIRE 282 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVD 383 P I I + +VGFPGET++DF ++ V + + +F YS GT +N E V Sbjct: 283 AVPGIHIRTTLLVGFPGETEEDFNELVEFVKWAKFERMGAFAYSEEEGTYSANHYEDDVT 342 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV---- 439 VK RL L +E VG++++V+I++ KE +GR+ + S V Sbjct: 343 PEVKQHRLDTLMAVQQEISADVEAEKVGKVMKVIIDR--KEGDYYIGRTEFCSSEVDPEV 400 Query: 440 ---LNSKNHNIGDIIKVRITDVKISTLYGELV 468 +G+ V+ITD + LYG +V Sbjct: 401 LIPAAGVRLRVGNFYDVKITDSEEFDLYGHVV 432 >gi|153940621|ref|YP_001391704.1| RNA modification protein [Clostridium botulinum F str. Langeland] gi|238065366|sp|A7GFZ4|RIMO_CLOBL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|152936517|gb|ABS42015.1| RNA modification enzyme, MiaB family [Clostridium botulinum F str. Langeland] gi|295319732|gb|ADG00110.1| RNA modification enzyme, MiaB family [Clostridium botulinum F str. 230613] Length = 445 Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 131/441 (29%), Positives = 222/441 (50%), Gaps = 37/441 (8%) Query: 31 SYGCQMNVYDSLRMEDMFF--SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 S GC N DS E M + ++ E V + +A +I++NTC E A E+ + + ++ Sbjct: 10 SLGCDKNRIDS---ELMLYKLNEEAELVKNPKEAQVIIVNTCGFIETAKEESINTILQMA 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGK 147 + K + ++VV GC+ Q E+ P +++++G Y +L E ++ + G+ Sbjct: 67 SYKKTH----NCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLKSGE 122 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + S K+ I +G NR TA++ I EGC+ FCT+C +P RG S Sbjct: 123 K------SFYHKYSDTKINEG--NRILTTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ E L GV EI L+ Q+ + G + G+K +LL +S+++G+ +R Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTMY-GIDIYGKK-VLHELLRDISKVEGVKWIR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P +++ LI+ + D + YL LP+Q S+ +LK M R+ T II ++R Sbjct: 233 LLYCYPEEITKELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIIDIIKKLRK 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD- 383 I + + IVGFPGET+ +F + V + + FKYS GT + M EQ+D Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDVKLDKLGVFKYSKEEGTSAALMEEQIDE 352 Query: 384 --ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437 + + E ++ LQ+ + + N +G+I EV++E G ++ GR SP + Sbjct: 353 EIKEKREEEIMILQQSISK---DINKEKIGKIYEVIVE--GTKEDMYYGRNYEMSPEIDG 407 Query: 438 VVLNSKNHN--IGDIIKVRIT 456 + K+ N IGDIIKV++T Sbjct: 408 EIYFEKDENVKIGDIIKVKVT 428 >gi|260911738|ref|ZP_05918314.1| MiaB family RNA modification enzyme [Prevotella sp. oral taxon 472 str. F0295] gi|260634163|gb|EEX52277.1| MiaB family RNA modification enzyme [Prevotella sp. oral taxon 472 str. F0295] Length = 431 Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 125/452 (27%), Positives = 214/452 (47%), Gaps = 46/452 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS + F + GY V+ + +++V+NTC E A E+ + + Sbjct: 10 TMGCSKNLVDSELLMKQFEANGYHCVHDSKNPKGEIVVINTCGFIESAKEESINTI---- 65 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE G L + V GC++Q +E+ + P V+ G Y L + L GK Sbjct: 66 -LEFAQAKEEGRLKQLYVMGCLSQRYQKELEQEIPQVDKFYGKFNYKNLLKDL-----GK 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIE 202 V+ N R +T A+L I EGCD+ C +C +P G Sbjct: 120 GVI-----------------ASCNGTRSITTPRHYAYLKISEGCDRSCAYCAIPLITGKH 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR ++++E R L+ GV E ++ Q + + G ++G++ ++L+ +++I+G+ Sbjct: 163 TSRPKEEILEEVRSLVSQGVKEFQIIAQEL-TYYGVDINGQR-QITNLISEMADIEGVEW 220 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R ++P L++ + Y+ + +Q SD +L M+R T + ++I RI Sbjct: 221 IRLHYAYPNQFPIDLLEVIKSKPNVCKYIDIALQHISDNMLTRMHRHVTKAQTMELIKRI 280 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 R P I + + +VGFPGETDDDF +D V + + +F YS GT + E Sbjct: 281 REEIPGIHLRTTLMVGFPGETDDDFNELLDFVKWARFERMGAFIYSEEEGTYSAKHYEDN 340 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL------ 435 V VK RL L +E VG+ + V+I++ KE +GR+ W Sbjct: 341 VPNEVKQRRLDQLMALQQEISAEVEAQKVGKTLRVIIDR--KEGDYYIGRTEWASPEVDP 398 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 + ++ + ++G VRITD + LYGE+ Sbjct: 399 EVLIPATMRLHVGKFYNVRITDSEEFDLYGEI 430 >gi|260174153|ref|ZP_05760565.1| putative Fe-S oxidoreductase [Bacteroides sp. D2] gi|315922418|ref|ZP_07918658.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696293|gb|EFS33128.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 439 Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 112/396 (28%), Positives = 199/396 (50%), Gaps = 28/396 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREVGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 +K+ V+V GC AQ + ++ + V+VV+G + L + L ++ G+ Sbjct: 73 ----VKQHPGAFVIVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + T + S D R R FL +Q+GCD FC++C +P+ RG + ++ Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++AR+ G EI L G N+ + GK GE +F DL+ +L +++G+ R R ++ Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVEGIERYRISS 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D +I+ MP+ H+P+QSG D +L+ M RR+ + + +I+ V P Sbjct: 237 IEPNLLTDAIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVRKIKEVMP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384 D I D IVG GET + F +D + Q F YS R GT ++ ++ Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + +++RLL L ++ +F +GQ++ VL+EK Sbjct: 357 HQRSQRLLTLSD---QKTQAFYARHIGQVMPVLMEK 389 >gi|160885195|ref|ZP_02066198.1| hypothetical protein BACOVA_03193 [Bacteroides ovatus ATCC 8483] gi|156109545|gb|EDO11290.1| hypothetical protein BACOVA_03193 [Bacteroides ovatus ATCC 8483] Length = 439 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 121/447 (27%), Positives = 219/447 (48%), Gaps = 31/447 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 +K+ D VVV GC AQ + ++ + V+VV+G + L + L ++ G+ Sbjct: 73 ----VKQHPDAFVVVTGCYAQLKPGDVAKIDG-VDVVLGAEQKGELLQYLGDLQKHEKGE 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + T + S D R R FL +Q+GCD FC++C +P+ RG + ++ Sbjct: 128 AITTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTI 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++ R+ G EI L G N+ + GK GE +F DL+ +L ++ G+ R R ++ Sbjct: 181 ASMVEQTRQAAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDQVDGIERYRISS 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D +I+ MP+ H+P+QSG D +L+ M RR+ + + +I+ V P Sbjct: 237 IEPNLLTDEIIEFVSHSRSFMPHFHIPLQSGCDEVLQLMRRRYDTALFASKVKKIKEVMP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384 D I D IVG GET + F +D + Q F YS R GT ++ ++ Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYQFIDGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + +++RLL L ++ +F +GQ + VL+EK K + G + V + S + Sbjct: 357 HQRSQRLLALSD---QKTQAFYARHIGQTMPVLMEK-SKAGAPMHGFTENYIRVEVESDD 412 Query: 445 HNIGDIIKVRITDV--KISTLYGELVV 469 ++ VR+ + +++ L G +++ Sbjct: 413 SLDNQVVNVRLGEFNEEMTALKGTILI 439 >gi|294339958|emb|CAZ88321.1| conserved hypothetical protein; putative enzyme [Thiomonas sp. 3As] Length = 466 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 131/470 (27%), Positives = 209/470 (44%), Gaps = 57/470 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ +QGY+ S ADL+++NTC + A ++ +G Sbjct: 22 SLGCPKALVDSERILTELRAQGYDTSKSYAGADLVIVNTCGFIDAAVQESLDAIGEA--- 78 Query: 91 KNSRIKEGGDLLVVVAGCVAQ----AEGEEILRR-SPIVNVVVGPQTYYRLPELLERARF 145 + E G V+V GC+ A G ++R P V V GP E+L+ Sbjct: 79 ----LAENGK--VIVTGCLGARNDAATGNNLVREVHPKVLAVTGPHA---TDEVLQHVH- 128 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V+ + D F L + G A+L I EGC+ CTFC++P RG +SR Sbjct: 129 --AVLPKPH---DPFVDL-VPPAGIKLTPKHYAYLKISEGCNHRCTFCIIPAMRGDLVSR 182 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254 + +V+ EAR L +GV E+ ++ Q+ +A W G+ + D L SL Sbjct: 183 PIGEVLSEARALFASGVKELLVVSQDTSAYGVDVKYRTGFWDGRPIRTRMTELVDALGSL 242 Query: 255 S-EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 + E VRL Y +P + A G + +PYL +P+Q +L+ M R + Sbjct: 243 AAEHDAWVRLHYVYPYPHVDEVLPLMAQGRI---LPYLDVPLQHAHPDVLRRMKRPASGE 299 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + I R R + P++ + S FI GFPGET+ +F+ +D + + + F YSP G Sbjct: 300 RNLERIARWREICPELVVRSTFIAGFPGETEAEFQTLLDFIREAELDRVGCFAYSPVEGA 359 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 + + + V E ++ ER E VGQ++ VL+++ +E G VGR+ Sbjct: 360 TANALADPVPEALREERRARFMAVAEEVSTRKLHKRVGQVMRVLVDQASREGG--VGRT- 416 Query: 434 WLQSVVLNSKNHNI---------------GDIIKVRITDVKISTLYGELV 468 + + ++ K H + G ++ RI L GELV Sbjct: 417 FADAPEIDGKVHLLPPDKPSTIMRLAQSGGQFVRARIVRTDGHDLVGELV 466 >gi|319404904|emb|CBI78505.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 427 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 115/372 (30%), Positives = 182/372 (48%), Gaps = 33/372 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S + S G + I+ NTC + AE V IR Sbjct: 7 TFGCRLNSYESEIIRKESTSAGLNELK----GGAIIFNTCAV---TAEAVRQAKQAIRKA 59 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEI-LRRSPIVNVVVG------PQTYYRLPELLERA 143 K ++ ++V GC AQ E + L + V++++G +Y +LP+ Sbjct: 60 K----RKNPHACIIVTGCAAQTEAKNFSLMKE--VDLILGNEEKLHAHSYRQLPD----- 108 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIE 202 FG D V D E I N G T AF+ +Q GCD CTFC++PY+RG Sbjct: 109 -FGINH-DEKLRVNDIMEVHKIAPHMINALEGRTRAFVQVQNGCDHRCTFCIIPYSRGRS 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLV 261 S + ++++ ++L+ NG+ EI L G ++ ++ G L G K T L+ + L + L Sbjct: 167 RSVPMGIIIEQIKQLVGNGIQEIVLTGVDLTSY-GPDLPG-KITLGKLVSTILHHVPDLP 224 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ + LI +MP+LHL +Q+G + ILK M RRH Q Sbjct: 225 RLRLSSIDSIEADQELINLLAYEKRIMPHLHLSLQAGDNMILKRMKRRHLRENAIQFCQD 284 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RP I +D I GFP ET++ F+ ++ L+ + G F +SPR GTP + M + Sbjct: 285 LRAKRPTIVYGADLIAGFPTETEEMFQNSLALIHECGLTHLHVFPFSPREGTPAARMPQI 344 Query: 382 VDE--NVKAERL 391 E ++AE+L Sbjct: 345 SREIIKIRAEKL 356 >gi|323100040|gb|ADX30521.1| MiaB-like protein 1 [Plutella xylostella] Length = 542 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 131/472 (27%), Positives = 219/472 (46%), Gaps = 46/472 (9%) Query: 14 VSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71 V +++ Q +VP Q +VK++GC N DS M + +QGY+ + A L +LN+C Sbjct: 48 VEKVILQSVVPGTQTIYVKTWGCAHNNSDSEYMVGLLAAQGYQLTDDKWSAQLWLLNSCT 107 Query: 72 IREKAAEKVYSF--LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VV 128 ++ A E + LG+ R + VVVAGCV Q R + + +V Sbjct: 108 VKNPAEEHFRNEIELGQARGIH-----------VVVAGCVPQGAP----RAGYLAGLSIV 152 Query: 129 GPQTYYRLPELLERAR-------FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181 G R+ E++E FG++ D +L V RK + + Sbjct: 153 GVHQIDRIVEIVEETLKGHTVRLFGQKKTDDGKKAGGASLQLPKV-----RKNPLIEIIA 207 Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241 I GC CT+C + RG S ++V+ AR+ GVCEI L ++ + G+ + Sbjct: 208 INTGCLNQCTYCKTKHARGELGSYPPEEIVERARQSFKEGVCEIWLTSEDTGTY-GRDIG 266 Query: 242 GEKCTFSDLL-YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSG 298 + +LL ++ I RLR ++P M + L + G + + +LH+PVQSG Sbjct: 267 ---TSLPELLDQPVAAIPAGCRLRLGMTNPPYMLEHLPRVAGIMRHSRVYKFLHVPVQSG 323 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 SD++L M R ++ ++ ++D +R P I I++D I GFP ET D T+ L + Sbjct: 324 SDQVLADMKREYSRKDFGYVVDYLRKEVPGITIATDIICGFPTETAADHELTVSLCRQYR 383 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEV 416 + F ++ R GTP +NM + + VK K+L E S+ VG+ EV Sbjct: 384 FPSLFINQFFARPGTPAANMTKVPGQEVKKR-----TKELSELFRSYEPYGHKVGETQEV 438 Query: 417 LIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 L +K VG + + + V++ + +G ++ V+IT ++ GE + Sbjct: 439 LDTDISHDKKYFVGHNEFYEQVLVPKEERYMGKMLTVKITSASKFSMMGEPI 490 >gi|83942143|ref|ZP_00954605.1| MiaB-like tRNA modifying enzyme [Sulfitobacter sp. EE-36] gi|83847963|gb|EAP85838.1| MiaB-like tRNA modifying enzyme [Sulfitobacter sp. EE-36] Length = 418 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 116/393 (29%), Positives = 182/393 (46%), Gaps = 26/393 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y++ M+++ G + D +++NTC + +A K + ++R Sbjct: 8 NHGCRLNAYETEAMKELAEQAGLK--------DAVIINTCAVTAEAVRKARQDIRKLR-- 57 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV- 149 K D ++V GC AQ E E + + + V+ + A F Sbjct: 58 -----KANPDARLIVTGCAAQTEPETFTKMAEVDAVIGNTEKMVGATWQGLAADFIGETE 112 Query: 150 ---VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 VD SV + L +DG R R A++ +Q GCD CTFC++PY RG S Sbjct: 113 ALQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRSVP 167 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 VVD+ ++L+D G E+ L G ++ +W G L ++ L + L RLR + Sbjct: 168 AGVVVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPATPKLGDLVMRILRLVPDLPRLRIS 226 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + ++ + L++A LMP+LHL +Q G D ILK M RRH + + R +R Sbjct: 227 SIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFAQEARKLR 286 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD+ +D I GFP ETD F ++ LV F YS R GTP + M V+ + Sbjct: 287 PDMTFGADIIAGFPTETDAMFENSLKLVTDCDLTWLHVFPYSAREGTPAARM-PAVNGTL 345 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ER L+ Q A G+ +VL+E Sbjct: 346 IKERAAQLRAAGDAQVARHLAAQQGRAHQVLME 378 >gi|167902426|ref|ZP_02489631.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei NCTC 13177] Length = 463 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 127/465 (27%), Positives = 210/465 (45%), Gaps = 50/465 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ +G Sbjct: 21 SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77 Query: 91 KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146 + E G V+V GC+ A G ++ P V V GP + + + + Sbjct: 78 ----LAENGK--VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPHAVGEVMQAV-HSHLP 130 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K D F L + G A+L I EGC+ C+FC++P RG +SR Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGELVSRP 181 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 +++V+ EA L +GV E+ ++ Q+ +A W G+ L K ++L+ +L Sbjct: 182 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 238 Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRH 310 E+ VRL Y +P + A G L ++PYL +P Q +LK M R Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHAHPEVLKRMKRPA 298 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 A + + + R + PD+ I S FI GFPGETD F A +D + + F YSP Sbjct: 299 NAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFEALLDFIRDAELDRVGCFAYSPV 358 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 G + + + ++V+ R + E + +G+ ++VLI++ E G+ Sbjct: 359 EGASANALDGALPDDVREARRARFMEVAEEVSAARIARKIGKTLKVLIDEVNAEGGIGRT 418 Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 +P + VV SK + +G+ + V+IT L+GE+ Sbjct: 419 AADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 463 >gi|24213838|ref|NP_711319.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai str. 56601] gi|81589771|sp|Q8F710|RIMO_LEPIN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|24194676|gb|AAN48337.1| 2-methylthioadenine synthetase [Leptospira interrogans serovar Lai str. 56601] Length = 437 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 112/446 (25%), Positives = 215/446 (48%), Gaps = 26/446 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++ + GC N+ DS+ M +G+ + +++D +NTC + A E+ + Sbjct: 3 KKFYITTLGCPKNIADSMSMHHSLLEEGFTLASLPEESDFHFINTCTFIQSATEETIQTI 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 L +++K+ +VV GC A+ + I P V++ G Y + ++L R + Sbjct: 63 -----LSAAQVKKQNHQKLVVVGCFAERYPDNIHSEIPEVDLFFGTGKYSQAGKIL-REK 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 F + + ER + N + A++ + +GC++ C+FC++P RG + Sbjct: 117 FPELSPSQLEFNDSLLERWKLSSKIENYSKPY-AYVKVSDGCNRGCSFCIIPSFRGKFVE 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 L ++ + + I G EI L+ Q+ + G D E D++ ++EI L LR Sbjct: 176 SPLDDILRDTNRAIRAGAKEICLVSQDTVYY---GRDSE--ILLDMVRKVAEIDSLEILR 230 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P ++ LI+ G+ + PYL P+Q S +ILK MNR + ++ + R Sbjct: 231 LLYLYPDKKTEKLIRLMGETSKIAPYLESPLQHVSSKILKVMNRTGESSYFKDLFSLARE 290 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 V+P + I + FI+G+PGE +D + ++ + F YSP+ GT G+ + + V E Sbjct: 291 VKPGLEIRTSFIIGYPGEEPEDVDQILRFIEDTRPEKVNLFSYSPQEGTKGAQLKQTVSE 350 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440 K++R+ ++ E +++ +G+ + +++ G E G++V R +P + VV Sbjct: 351 KEKSKRINLIRDSHLEILEEIHESRIGRTYDAIVD--GIEDGQVVVRRFQDAPEMDEVVY 408 Query: 441 NSKNHNIGDI--IKVRITDVKISTLY 464 + D+ I RI V+I + Y Sbjct: 409 ------VDDVSLIPGRIGKVRIDSFY 428 >gi|120436584|ref|YP_862270.1| radical SAM superfamily protein, UPF0004 [Gramella forsetii KT0803] gi|238066249|sp|A0M3K8|RIMO_GRAFK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|117578734|emb|CAL67203.1| radical SAM superfamily protein, UPF0004 [Gramella forsetii KT0803] Length = 450 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 132/454 (29%), Positives = 221/454 (48%), Gaps = 45/454 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R V + GC NVYDS + + + V+ +D +++V+NTC + A E+ + + Sbjct: 10 RINVVTLGCSKNVYDSEILMGQLKANDKDVVHE-EDGNIVVINTCGFIDNAKEQSVNTI- 67 Query: 86 RIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 L+ K+ GD+ V V GC+++ ++ + P V+ G LP LL Sbjct: 68 ----LEFVEKKQQGDVDKVFVTGCLSERYKPDLQKEIPDVDQYFGTT---ELPGLL---- 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++ DY E ERL+ Y A+L I EGCD+ C+FC +P RG S Sbjct: 117 ---SALEADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGGHKS 166 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--V 261 + +V EA KL NGV E+ L+ Q++ + GLD +K ++LL +L +++G+ + Sbjct: 167 TPIENLVTEAEKLAANGVKELILIAQDLTYY---GLDLYKKRNLAELLENLVKVEGIEWI 223 Query: 262 RLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 RL Y T P D+ + + + + YL +P+Q SD +LKSM R T + +++ Sbjct: 224 RLHYAFPTGFPMDVLEVMKREPK----VCNYLDIPLQHISDDLLKSMRRGTTHEKTTKLL 279 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R P++AI + IVG+PGET++ ++ + V ++ + + F YS T N+ Sbjct: 280 KEFRKTVPEMAIRTTLIVGYPGETEEHYQELKEWVKEMRFERLGCFTYSHEENTHAYNLE 339 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435 + V + VK ER + + + N +G++ V+I++ KE +GR SP + Sbjct: 340 DDVPQEVKQERANEIMEIQSQISWELNQQKIGEVFNVVIDR--KEGNYFIGRTEYDSPDV 397 Query: 436 QSVVLNSKNH---NIGDIIKVRITDVKISTLYGE 466 + VL GD V+I + LYGE Sbjct: 398 DNEVLIDATTVYLKTGDYYDVKIAEAADFDLYGE 431 >gi|296127462|ref|YP_003634714.1| RNA modification enzyme, MiaB family [Brachyspira murdochii DSM 12563] gi|296019278|gb|ADG72515.1| RNA modification enzyme, MiaB family [Brachyspira murdochii DSM 12563] Length = 417 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 119/438 (27%), Positives = 217/438 (49%), Gaps = 44/438 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + ++GC++N Y+S ++ + G + +D+A+ I +NTC + + +K+ ++L ++ Sbjct: 5 LHTFGCRLNQYESEKISYELKNMG-ANITELDNAEAIAINTCTVTNDSDKKLIAYLEKLG 63 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV--NVVVGPQTYYRLPELLERARFG 146 +L + V + GC + ++ S I+ N+++ P E+ Sbjct: 64 DLSQKK--------VFLIGCYVSKKDKD----SSIIKDNIILIPN---------EKKEEA 102 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++ ++ I + + + A+L IQ+GC+ FCT+C+V RG S Sbjct: 103 SEII---FNTMHNNSENKINNPIFFPQEQSRAYLKIQDGCEVFCTYCIVSRVRGSHRSVE 159 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE--IKGLVRLR 264 ++ D + D G EI L G N+ ++ + +F ++L + E K +R+R Sbjct: 160 PQKIFDAVKMANDYGYKEIVLTGLNLGSYNY----NNEISFYNILTQILEHSSKYGIRIR 215 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P D LI + DVL P+ H+P+QSGS++ILK MNRR+T +Y + +++ Sbjct: 216 LSSVEPLYFDDNLISLFKNDDVLCPHAHIPLQSGSNKILKLMNRRYTREDYLSVTEKLYK 275 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 ++AISSD +VGFP E + DF T DL +K + + F+YS R TP S M QV Sbjct: 276 TNSNMAISSDVMVGFPHEENTDFNDTYDLCEKSKFIKIHIFRYSNRENTPSSKMDSQVGY 335 Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 K +R L L KL++ + + +A G+ ++++IEK + + +L+ Sbjct: 336 RTKLKRAKILNTLNGKLKD--LYYKNA-EGRDLKIVIEKTLSDNNYIGTSGEYLK----- 387 Query: 442 SKNHNIGDIIKVRITDVK 459 K H+ + K +T VK Sbjct: 388 CKLHSESSLNKKELTSVK 405 >gi|322806672|emb|CBZ04241.1| ribosomal protein S12p Asp88 (E. coli) methylthiotransferase [Clostridium botulinum H04402 065] Length = 445 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 131/441 (29%), Positives = 222/441 (50%), Gaps = 37/441 (8%) Query: 31 SYGCQMNVYDSLRMEDMFF--SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 S GC N DS E M + ++ E V + +A +I++NTC E A E+ + + ++ Sbjct: 10 SLGCDKNRIDS---ELMLYKLNEEAELVKNPKEAQVIIVNTCGFIETAKEESINTILQMA 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGK 147 + K + ++VV GC+ Q E+ P +++++G Y +L E ++ + G+ Sbjct: 67 SYKKTH----NCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLKSGE 122 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + S K+ I +G NR TA++ I EGC+ FCT+C +P RG S Sbjct: 123 K------SFYHKYSDTKINEG--NRILTTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ E L GV EI L+ Q+ + G + G+K +LL +S+++G+ +R Sbjct: 175 RKKENILKEVENLAKQGVREIILIAQDTTMY-GIDIYGKK-VLHELLRDISKVEGVKWIR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P +++ LI+ + D + YL LP+Q S+ +LK M R+ T II ++R Sbjct: 233 LLYCYPEEITKELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD- 383 I + + IVGFPGET+ +F + V + + FKYS GT + M EQ+D Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDVKLDKLGVFKYSKEEGTSAALMEEQIDE 352 Query: 384 --ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437 + + E ++ LQ+ + + N +G+I EV++E G ++ GR SP + Sbjct: 353 EIKEKREEEIMILQQSISK---DINKEKIGKIYEVIVE--GTKEDMYYGRNYEISPEIDG 407 Query: 438 VVLNSKNHN--IGDIIKVRIT 456 + K+ N IGDIIKV++T Sbjct: 408 EIYFEKDENVKIGDIIKVKVT 428 >gi|315608919|ref|ZP_07883891.1| RNA modification enzyme [Prevotella buccae ATCC 33574] gi|315249299|gb|EFU29316.1| RNA modification enzyme [Prevotella buccae ATCC 33574] Length = 434 Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 130/453 (28%), Positives = 209/453 (46%), Gaps = 45/453 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVN--SMDDADLIVLNTCHIREKAA-EKVYSFLGRI 87 + GC N+ DS + F + GY V+ + ++ V+NTC E A E + + L + Sbjct: 10 TMGCSKNLVDSEVLMKQFEANGYRCVHDAAHPQGEIAVINTCGFIETAKQESINTILEFV 69 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-- 145 + R+ + + V GC++Q +E+ P V+ G Y +L L +A Sbjct: 70 QAKTEGRLNK-----LYVMGCLSQRYKDELEAEIPEVDKFYGKFNYKQLLADLGKAELPS 124 Query: 146 --GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+R + T A+L I EGCD+ C +C +P G + Sbjct: 125 CNGRRHLTTPRHY---------------------AYLKIAEGCDRHCAYCAIPLMTGRHV 163 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +++DE R+L+ GV E ++ Q + + G LDG ++L+ +++I G+ + Sbjct: 164 SRPMDEILDEVRELVAGGVKEFQVIAQELTYY-GIDLDGHH-HIAELISRMADIPGVKWI 221 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++P L+ + + YL + +Q SD IL M+R T E ++I ++R Sbjct: 222 RLHYAYPNQFPMDLLDVMRERPNVCRYLDIALQHISDHILSRMHRHVTKQETVELIRKMR 281 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382 P I I + +VGFPGET+DDFR +D V + + + +F YS GT + E V Sbjct: 282 EAVPGIHIRTTLLVGFPGETEDDFRQLVDFVREARFERMGAFAYSEEEGTYSAEHYEDDV 341 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438 +VK RL L +E VGQ++ V+I++ KE VGR SP + Sbjct: 342 PADVKQRRLDELMAVQQEISAEIEAGKVGQVMPVIIDR--KEGNYYVGRTEFCSPEVDPE 399 Query: 439 VL---NSKNHNIGDIIKVRITDVKISTLYGELV 468 VL K G V+I D + LYGEL Sbjct: 400 VLIPAGRKRLRTGCFYNVKIVDSEEFDLYGELA 432 >gi|308233969|ref|ZP_07664706.1| SSU ribosomal protein S12P methylthiotransferase [Atopobium vaginae DSM 15829] gi|328944022|ref|ZP_08241487.1| MiaB tRNA modifying enzyme-like protein [Atopobium vaginae DSM 15829] gi|327491991|gb|EGF23765.1| MiaB tRNA modifying enzyme-like protein [Atopobium vaginae DSM 15829] Length = 504 Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 120/476 (25%), Positives = 207/476 (43%), Gaps = 50/476 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N D+ RM + G+E AD++++NTC E A + + Sbjct: 41 TLGCAKNQVDTDRMRALLLKSGFEESRDASSADVVIINTCSFLESATSESIEVTLDLAQK 100 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + S I + L +++ GCV G + + P V+ V + ++ G Sbjct: 101 RTSGITK---LPIIMCGCVPSRYGAALDKELPEVSAFVKATDEDSIVGIVSDV-LGIEHP 156 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +S E L ++G +AF+ I EGCD++C FC +P+ RG SR ++ Sbjct: 157 TFSFSQELSARALRTIEG-------TSAFVKISEGCDRYCAFCAIPFIRGHYASRCPEEI 209 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW------RGKGL---------DGEKCTFSD------ 249 E L++ GV EI L+GQ+ W RG D + D Sbjct: 210 FSEITMLMEGGVKEIILIGQDTGIWGEDFSSRGAASVLHKDSDLHDPSSASSFDKNSTQH 269 Query: 250 ----LLYSLSEIKGLVR-----LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300 L + L E+ +VR +R P M++ LI D ++PY+ +P+Q ++ Sbjct: 270 ESMNLAWLLREVARIVRPYKAWIRVLYLQPEGMTEDLIATIRDTPEVLPYIDIPIQHCNE 329 Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 R+LK M R +A + ++ +R P + + + +VGFP ETD++ +D + + Sbjct: 330 RLLKKMGRSGSASQLHKLFAHLRHEIPQMVLRTTGMVGFPTETDEEAAELVDFFKQEEFD 389 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 F YS LGT + M Q+ K ER L+ E + VG++++V+I+ Sbjct: 390 YMSVFSYSQELGTTAAKMRGQISAETKIERTQTLRDTAEELGFAATAKHVGEVVDVIIDS 449 Query: 421 --HGKEKGKLVGRSPWLQS------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +G + W Q+ V + + N GD+++V++ + L GELV Sbjct: 450 IDMDSPDKERIGHA-WFQAPDCDGCVHILDTDANPGDVVRVKLKEAYCYELVGELV 504 >gi|297677249|ref|XP_002816517.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated protein 1-like 1-like, partial [Pongo abelii] Length = 577 Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 123/460 (26%), Positives = 218/460 (47%), Gaps = 47/460 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 64 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 120 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K +VVAGCV QA+ + + ++G Q R+ E++E Sbjct: 121 NSIKKAQEENKK------IVVAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 171 Query: 145 FGKRVVDTDYSVED--KFERLSI-VDGGYNR-----KRGVTAFLTIQEGCDKFCTFCVVP 196 G YSV K+++ + G R K+ V + +++ C CT+C Sbjct: 172 KG-------YSVSHLCKYKQNGARLHGARLRLKKKKKKCVVSLISLNTXCLNACTYCKTK 224 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 + RG S + ++VD A++ GVCEI L ++ A+ G+ + LL+ L E Sbjct: 225 HARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPTLLWKLVE 280 Query: 257 I--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 + G+ Y H +M+ L + + +LH+PVQS SD +L M R Sbjct: 281 VIPEGAMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMEMKR 335 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + ++++++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ Sbjct: 336 EYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFY 395 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 PR GTP + M EQV VK +R L + S D +G+ +VL+ + + Sbjct: 396 PRPGTPAAKM-EQVPAQVKKQRTKDLSRVF--HSYSPYDHKIGERQQVLVTEESFDSKFY 452 Query: 429 VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + + + V++ +G +++V I + + G+ V Sbjct: 453 VAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 492 >gi|329942587|ref|ZP_08291397.1| RNA modification enzyme, MiaB family protein [Chlamydophila psittaci Cal10] gi|332287217|ref|YP_004422118.1| MiaB-like tRNA modifying enzyme [Chlamydophila psittaci 6BC] gi|313847811|emb|CBY16802.1| conserved hypothetical protein [Chlamydophila psittaci RD1] gi|325506891|gb|ADZ18529.1| MiaB-like tRNA modifying enzyme [Chlamydophila psittaci 6BC] gi|328815497|gb|EGF85485.1| RNA modification enzyme, MiaB family protein [Chlamydophila psittaci Cal10] gi|328914465|gb|AEB55298.1| MiaB-like tRNA modifying enzyme [Chlamydophila psittaci 6BC] Length = 422 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 122/445 (27%), Positives = 208/445 (46%), Gaps = 47/445 (10%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 GC++N Y+ D GY + + DL ++NTC + A R+ Sbjct: 16 GCRVNQYEIQSYRDQLNFLGYREITDPEVPCDLCIVNTCAVTGSAESSG-------RHAV 68 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151 ++ D +VV GC+ +A+ E +V + + + ++ Sbjct: 69 RQVCRQNPDAFLVVTGCLGEADREFFNSLDRQCLLVSNKEKHLLMEKIFP---------- 118 Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211 S++D E G +R AF+ +Q+GC+ FC++C++PY RG SR + +++ Sbjct: 119 ---SIQDLPEFRIRSFSGKSR-----AFIKVQDGCNSFCSYCIIPYLRGRSRSRPVQEIL 170 Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271 +E L+ G E+ + G NV ++ +G + + L+ + EI G+ R+R ++ P Sbjct: 171 EEISGLVTQGYREVVIAGINVGDYQDQGK-----SLAYLISQVDEIPGIERIRISSIDPE 225 Query: 272 DMSDCLIKAHGDLDVLMP------YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 D+ D L D+L+ HL +QSGS+ ILK MNR+++ ++ +D +RSV Sbjct: 226 DVQDDL------RDILLSGKHTCHSSHLVLQSGSNAILKRMNRKYSRGDFLDCVDALRSV 279 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P A ++D IVGFPGETD DF T+ +V+ +G+ + F +SPR T Q+ + Sbjct: 280 DPQYAFTTDVIVGFPGETDQDFEETLRIVEDVGFIKVHIFPFSPRERTKAYTFSSQLPVS 339 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL--NSK 443 V ER L RE +G + VL+E+ + G G S + V + Sbjct: 340 VINERKKHLAHVAREVAHREQMRRIGDTLSVLVER--VDGGFAYGHSSYFDMVGFPADPS 397 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 ++ +I VRI V+ L G+ V Sbjct: 398 EVSVNTLIDVRIESVEEDVLKGKRV 422 >gi|225460743|ref|XP_002268292.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 615 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 131/464 (28%), Positives = 222/464 (47%), Gaps = 52/464 (11%) Query: 22 IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 I+P Q ++K++GC N DS M + GY ++ ++ADL ++NTC ++ + Sbjct: 50 IIPGTQTIYMKTFGCSHNQSDSEYMAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSA 109 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 + + + + R+ K +VVAGCV Q G L+ V++V G Q R+ E+ Sbjct: 110 MDTLITKGRSSKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEV 157 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 +E G V + L +D RK L I GC CT+C + R Sbjct: 158 VEETLKGHEVRLLNRKT------LPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHAR 211 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIK 258 G S ++ +V R +I +GV EI L ++ A+ G+ + T LL ++ SE+ Sbjct: 212 GHLGSYTVDSLVRRVRTVIADGVKEIWLSSEDTGAY-GRDIG---VTLPILLNAIVSELP 267 Query: 259 ---------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 G+ Y H ++M+ L + +LH+PVQSGSD IL +MNR Sbjct: 268 PDGGTMLRIGMTNPPYILEHLKEMAVVLRHP-----CVYSFLHVPVQSGSDAILSAMNRE 322 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 +T E+R ++D + + P + I++D I GFPGETD++F T+ L+ + + Q ++ P Sbjct: 323 YTVTEFRTVVDTLTELVPGMQIATDIICGFPGETDEEFAQTVSLIQEYRFPQVHISQFYP 382 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN-----DACVGQIIEVLIEKHGKE 424 R GTP + M ++V V ++K+ RE F + G++ + I + + Sbjct: 383 RPGTPAARM-KKVPSAV-------VKKRSRELTSIFEAFTPYNGMEGRVERIWISEIATD 434 Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 LVG + V++ + +G V+IT V +++GEL+ Sbjct: 435 GIHLVGHTKGYMQVLVVAPRSLMGTSAIVKITSVGRWSVFGELI 478 >gi|170754856|ref|YP_001781949.1| RNA modification protein [Clostridium botulinum B1 str. Okra] gi|238065365|sp|B1II37|RIMO_CLOBK RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|169120068|gb|ACA43904.1| RNA modification enzyme, MiaB family [Clostridium botulinum B1 str. Okra] Length = 445 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 130/439 (29%), Positives = 220/439 (50%), Gaps = 33/439 (7%) Query: 31 SYGCQMNVYDSLRMEDMFF--SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 S GC N DS E M + ++ E V + +A +I++NTC E A E+ + + ++ Sbjct: 10 SLGCDKNRIDS---ELMLYKLNEEAELVKNPKEAQVIIVNTCGFIETAKEESINTILQMA 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGK 147 + K + ++VV GC+ Q E+ P +++++G Y +L E ++ + G+ Sbjct: 67 SYKKTH----NCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLKSGE 122 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + S K+ I +G NR TA++ I EGC+ FCT+C +P RG S Sbjct: 123 K------SFYHKYSDTKINEG--NRILTTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ E L GV EI L+ Q+ + G + G+K +LL +S+++G+ +R Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTMY-GIDIYGKK-VLHELLRDISKVEGVKWIR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P +++ LI+ + D + YL LP+Q S+ +LK M R+ T II ++R Sbjct: 233 LLYCYPEEITKELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD- 383 I + + IVGFPGET+ +F + V + + FKYS GT + M EQ+D Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDVKLDKLGVFKYSKEEGTSAALMEEQIDE 352 Query: 384 --ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVV 439 + + E ++ LQ+ + + N +G+I EV++E K G+ SP + + Sbjct: 353 EIKEKREEEIMILQQSISK---DINKEKIGKIYEVIVEGIKEDMYYGRNYEMSPEIDGEI 409 Query: 440 LNSKNHN--IGDIIKVRIT 456 K+ N IGDIIKV++T Sbjct: 410 YFEKDENVRIGDIIKVKVT 428 >gi|62184901|ref|YP_219686.1| hypothetical protein CAB260 [Chlamydophila abortus S26/3] gi|62147968|emb|CAH63716.1| conserved hypothetical protein [Chlamydophila abortus S26/3] Length = 421 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 121/444 (27%), Positives = 208/444 (46%), Gaps = 46/444 (10%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 GC++N Y+ D GY + + DL ++NTC + A R+ Sbjct: 16 GCRVNQYEIQSYRDQLNFLGYREITDPEIPCDLCIVNTCAVTGSAESSG-------RHAV 68 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151 ++ D L+VV GC+ +A+ E +V + + ++ Sbjct: 69 RQVCRQNPDALLVVTGCLGEADKEFFYSLDRQCLLVSNKDKHQLMEKIFP---------- 118 Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211 S++D E G +R AF+ +Q+GC+ FC++C++PY RG SR + +++ Sbjct: 119 ---SIQDLPEFRIRSFSGKSR-----AFIKVQDGCNSFCSYCIIPYLRGRSRSRPVQEIL 170 Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271 +E L+ G E+ + G NV ++ +G + + L+ + EI G+ R+R ++ P Sbjct: 171 EEISGLVSQGYREVVIAGINVGDYQDQGK-----SLAYLISQVDEIPGIERIRISSIDPE 225 Query: 272 DMSDCLIKAHGDLDVLMP------YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 D+ D L DVL+ HL +QSGS+ ILK MNR+++ ++ ++ +RS Sbjct: 226 DVQDDL------RDVLLSGKHTCHSSHLVLQSGSNAILKRMNRKYSRGDFLDCVEALRSA 279 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P ++D IVGFPGETD DF T+ +V+ +G+ + F +SPR T Q+ + Sbjct: 280 DPQYTFTTDVIVGFPGETDQDFEETLRIVEDVGFIKVHIFPFSPRERTKAYTFSSQLPVS 339 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS-KN 444 V ER L RE +G + VL+E+ ++G G S + V + + Sbjct: 340 VINERKKHLAHVAREVAYREQRRRIGDTLSVLVER--VDEGIAYGHSSYFDMVGFPADPD 397 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 ++ +I VRI V+ L G+ V Sbjct: 398 VSVNTLIDVRIESVEEDILKGKRV 421 >gi|167562580|ref|ZP_02355496.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia oklahomensis EO147] Length = 453 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 127/475 (26%), Positives = 215/475 (45%), Gaps = 60/475 (12%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ +G Sbjct: 6 RIGIVSLGCPRALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIG 65 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLE 141 + E G V+V GC+ A G ++ P V V GP + + + Sbjct: 66 EA-------LAENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQAV- 115 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + K D F L + G A+L I EGC+ C+FC++P RG Sbjct: 116 HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGD 166 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDL 250 +SR +++V+ EA L +GV E+ ++ Q+ +A W G+ L K ++L Sbjct: 167 LVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTEL 223 Query: 251 LYSLSEIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300 + +L E+ VRL Y +P M++ +K H ++PYL +P Q Sbjct: 224 VGALGELAAQYGAWVRLHYVYPYPHVDEIIPMMAEGPLKGH-----VLPYLDVPFQHAHP 278 Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 +LK M R A + + + + R + PD+ I S FI GFPGET+ F +D + + Sbjct: 279 DVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAELD 338 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + F YSP G + + + ++V+ R + + + VG+ ++VLI++ Sbjct: 339 RVGCFAYSPVEGASANELDGALPDDVREARRARFMEVAEAVSAARIERKVGKTLKVLIDE 398 Query: 421 HGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 399 VNAEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 453 >gi|52549017|gb|AAU82866.1| conserved hypothetical protein [uncultured archaeon GZfos21B5] Length = 430 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 120/446 (26%), Positives = 221/446 (49%), Gaps = 50/446 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F++++GC N D++ M + + G+E V +AD++++NTC + ++ L Sbjct: 12 KVFIETFGCTANTGDTMEMRAILRNAGHEIVEE-SEADIVIVNTCTVTKRTE------LN 64 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I+ L + +KE G VVVAGC+A A+ E +V ++G P ++ + Sbjct: 65 VIKRL--NELKERGKA-VVVAGCMAAAQPE-------LVKSILGDGVAMVTPRDIQASE- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 K+ +D D GV A +TI +GC CT+C+V RG S Sbjct: 114 -KQRLDFD---------------------GVIAVITIAQGCIGKCTYCIVKQARGKLKSY 151 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ + + +++G EI + Q+ +A+ G LL ++ ++G R+R Sbjct: 152 KSEKICEAVKSAVESGANEIRITSQDSSAY---GWSSTDIKLPALLEQITSVEGDFRIRV 208 Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +P + D L++A + + + + H+PVQSGSDR+L+ M R + ++ +I+ I Sbjct: 209 GMMNPFTLMPILDELLEAF-NTEKIFKFFHVPVQSGSDRVLREMKRNYKVADFVEIVTNI 267 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ IS+DFI+GFP ET++DF A+++L+++I + ++SPR GT S + + + Sbjct: 268 RARFRQSTISTDFIIGFPTETEEDFFASLNLMEEIKPEKVNITRFSPRPGTEASKLTDLL 327 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E K R + N G + VL+ + GK KG ++ R +++VL Sbjct: 328 -EREKKRRSRIFSTVYHNIVFAKNKELEGAELPVLVTETGK-KGGVIARDSAYRAIVLKD 385 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 + +G KVR+ + K + L +++ Sbjct: 386 -DLPLGTRYKVRVKEAKSTYLVADIL 410 >gi|51473604|ref|YP_067361.1| tRNA-methylthiotransferase (MiaB protein) [Rickettsia typhi str. Wilmington] gi|51459916|gb|AAU03879.1| tRNA-methylthiotransferase (MiaB protein) [Rickettsia typhi str. Wilmington] Length = 421 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 112/397 (28%), Positives = 191/397 (48%), Gaps = 35/397 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N+Y+S + G + V + NTC + + A ++ + + + Sbjct: 16 TFGCRLNIYESEIIRKNLELSGLDNV--------AIFNTCAVTKSAEKQARQAIRKAK-- 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT----YYRLPELLERARFG 146 K DL ++V GC AQA + S + V+ + YY++ + Sbjct: 66 -----KNNPDLKIIVTGCSAQANPKMYGNMSEVDKVIGNEEKLLSHYYQITD-------Q 113 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K V+ SV++ L G +R AF+ +Q GCD CTFC++PY RG S Sbjct: 114 KISVNDIMSVKETACHLVSSFDGKSR-----AFIQVQNGCDHNCTFCIIPYGRGRSRSTP 168 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRY 265 + +V + + L+ G E+ + G +V A+ G L G TF+ ++ L+ + L R+R Sbjct: 169 IGTIVAQVKHLVLKGFKEVVITGVDVTAY-GSDLPGSP-TFAQMIKRVLNLVPELKRIRL 226 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ ++ D + +MP+ H+ +QSG D ILK M RRH + ++R++ Sbjct: 227 SSIDIAEVDDEFFELIAYSKRIMPHFHISLQSGDDMILKRMKRRHNRASVIEFCQKLRAI 286 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RP+++ +D I GFP ET++ F T L+ + F YS R GTP M QV +N Sbjct: 287 RPEVSFGADIIAGFPTETNEMFENTRKLILEAELQYLHVFPYSEREGTPAIRM-PQVPKN 345 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 ++ ER L++ Q F +GQ +E+LIE + Sbjct: 346 IRKERAKILRQDGYNQLTEFFKKHIGQKVELLIENNN 382 >gi|15807855|ref|NP_285512.1| ribosomal protein S12 methylthiotransferase [Deinococcus radiodurans R1] gi|81552183|sp|Q9RYW7|RIMO_DEIRA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|6460480|gb|AAF12186.1|AE001862_12 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 504 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 131/478 (27%), Positives = 222/478 (46%), Gaps = 58/478 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GYE S + AD +++NTC A E+ S +G + Sbjct: 27 SLGCPKALVDSERILTQLRAEGYEVAPSYEGADAVIVNTCGFITPAVEESLSAIGEALDA 86 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT------YYR--LP----- 137 V+V GC+ + E+I+ R P V + G + + R LP Sbjct: 87 TGK---------VIVTGCLGE-RPEKIMERHPKVAAITGSEAVDDVMGHVRELLPIDQGA 136 Query: 138 --ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 LL A G R + + + A++ + EGC+ C FC++ Sbjct: 137 FTGLLPVAAPGMRA-GVETPQRENTRHGDVFAPSVKLTPRHYAYVKVAEGCNHTCAFCII 195 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTF 247 P RG+++SR V+ EA +LI G E+ ++ Q+ +A +R GE + Sbjct: 196 PKLRGLQVSRDAGAVLYEAYRLIAGGTKELMIIAQDTSAYGVDLRYRESEFQGEQVRAHL 255 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 +DL L E+ VR+ Y +P + A G ++PYL +P+Q S +ILK M Sbjct: 256 TDLAVKLGEMGAWVRMHYVYPYPHVDRVVELMAQGK---VLPYLDIPLQHASPKILKLM- 311 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 RR A + I R R + P++ I S FIVGFPGET++DF+ + ++ + +F Y Sbjct: 312 RRPGAGKQLDTIRRWREICPELVIRSTFIVGFPGETEEDFQELLQFLEDARLDRVGAFPY 371 Query: 368 SPRLGTPGSNMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 S + + V E VK ERL + + +++ +++S VG++++V+I++ + Sbjct: 372 SDIEEADANALPGAVPEEVKQERLARFMEVAQRISTEKLSEK---VGRVMDVIIDEFNDD 428 Query: 425 K---------GKLVGRSPWLQS-VVLNSKNH----NIGDIIKVRITDVKISTLYGELV 468 + G+ G +P + V L + + IGDI++ RI D L+GE++ Sbjct: 429 EDDQPGTRLIGRTKGDAPGIDGQVYLYAGDFAGLVKIGDIVRARIEDSDEYDLFGEVI 486 >gi|83953198|ref|ZP_00961920.1| MiaB-like tRNA modifying enzyme [Sulfitobacter sp. NAS-14.1] gi|83842166|gb|EAP81334.1| MiaB-like tRNA modifying enzyme [Sulfitobacter sp. NAS-14.1] Length = 418 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 116/393 (29%), Positives = 182/393 (46%), Gaps = 26/393 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y++ M+++ G + D +++NTC + +A K + ++R Sbjct: 8 NHGCRLNAYETEAMKELAEQAGLK--------DAVIVNTCAVTAEAVRKARQDIRKLR-- 57 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV- 149 K D ++V GC AQ E E + + + V+ + A F Sbjct: 58 -----KANPDARLIVTGCAAQTEPETFTKMAEVDAVIGNTEKMVGATWKGLAADFIGETE 112 Query: 150 ---VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 VD SV + L +DG R R A++ +Q GCD CTFC++PY RG S Sbjct: 113 ALQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRSVP 167 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 VVD+ ++L+D G E+ L G ++ +W G L ++ L + L RLR + Sbjct: 168 AGVVVDQIKRLVDKGFNEVVLTGVDLTSW-GADLPATPKLGDLVMRILRLVPDLPRLRIS 226 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + ++ + L++A LMP+LHL +Q G D ILK M RRH + + R +R Sbjct: 227 SIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFAQEARKLR 286 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD+ +D I GFP ETD F ++ LV F YS R GTP + M V+ + Sbjct: 287 PDMTFGADIIAGFPTETDAMFENSLKLVTDCDLTWLHVFPYSAREGTPAARM-PAVNGTL 345 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ER L+ Q A G+ +VL+E Sbjct: 346 IKERAAQLRAAGDAQVARHLAAQQGRAHQVLME 378 >gi|319943645|ref|ZP_08017926.1| RNA modification enzyme [Lautropia mirabilis ATCC 51599] gi|319742878|gb|EFV95284.1| RNA modification enzyme [Lautropia mirabilis ATCC 51599] Length = 497 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 140/482 (29%), Positives = 225/482 (46%), Gaps = 62/482 (12%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P FV S GC + DS R+ ++GY+ N + ADL+V+NTC ++A + Sbjct: 39 APSVGFV-SLGCPKALVDSERIVTQLRAEGYQISNQYEGADLVVVNTCGFIDEAVAESLD 97 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE-----EILRR-SPIVNVVVGPQTYYRL 136 +G + E G V+V GC+ G+ ++R P V V GP + L Sbjct: 98 AIGEA-------LHENGK--VIVTGCLGARTGQGGKDSNLVREIHPSVLAVTGP---HAL 145 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 E++ V D F L + GG A+L I EGC+ C+FC++P Sbjct: 146 EEVM------ANVHQHLPKPHDPFSDL-VPAGGIKLTPRHYAYLKISEGCNHRCSFCIIP 198 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFS 248 RG SR + +V+ EA L+ GV E+ ++ Q+ +A+ R +DG K Sbjct: 199 SLRGDLDSRPIGEVMREAENLLKAGVKELLVISQDTSAYGVDLRYRTDFVDGRPVKTRLF 258 Query: 249 DLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 +L L ++ VRL Y +P + A G +++PYL +P+Q RILK Sbjct: 259 ELCRELGQLARQYGAWVRLHYVYPYPAVDDVLPLMAEG---LILPYLDVPLQHAHPRILK 315 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 M R + + I R V P++ I S FI GFPGET+++F+ +D +++ + Sbjct: 316 LMKRPASGERNIERIQAWRKVCPELTIRSTFIAGFPGETEEEFQYLLDFLEEAQLDRVGC 375 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIE-- 419 F YSP G +++ + + + V+ E RL+ +Q+ + E +++ VGQ +EVL++ Sbjct: 376 FAYSPVEGAAANDLPDPLPDEVREERAARLMEVQEGISEARMARK---VGQTLEVLVDAI 432 Query: 420 KHGKEKG--KLVGRS----PWLQSVVLNSKNHNIGD-------IIKVRITDVKISTLYGE 466 +H E+G +LVGRS P + V + D ++ ITD L GE Sbjct: 433 EHDPEEGWWRLVGRSQADAPEIDGQVYVELDEAPADGTMGPGTFVRAHITDYDAHDLVGE 492 Query: 467 LV 468 L Sbjct: 493 LA 494 >gi|332759741|gb|EGJ90044.1| RNA modification enzyme, MiaB family protein [Shigella flexneri 4343-70] Length = 395 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 125/422 (29%), Positives = 210/422 (49%), Gaps = 44/422 (10%) Query: 64 LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123 ++++NTC + A ++ +G N E G V+V GC+ E ++I P Sbjct: 1 MVIVNTCGFIDSAVQESLEAIGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPK 50 Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLT 181 V + GP +Y ++ E + Y + K LS+V + G A+L Sbjct: 51 VLEITGPHSYEQVLEHVHH-----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLK 99 Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------ 235 I EGC+ CTFC++P RG +SR + +V+ EA++L+D GV EI ++ Q+ +A+ Sbjct: 100 ISEGCNHRCTFCIIPSIRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKH 159 Query: 236 RGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293 R +GE K + L LS++ RL Y +P + A G + +PYL + Sbjct: 160 RTGFHNGEPVKTSMVSLCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDI 216 Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 P+Q S RILK M R + I + R + P++ + S FIVGFPGET++DF+ +D Sbjct: 217 PLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDF 276 Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACV 410 + + + FKYSP G + + +QV E VK E R + LQ+++ +++ V Sbjct: 277 LKEARLDRVGCFKYSPVEGADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---V 333 Query: 411 GQIIEVLIEKHGKEK--GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 G+ I V+I++ +E G+ + +P + V + N+ GDI++V++ L+G Sbjct: 334 GREILVIIDEVDEEGAIGRSMADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGS 393 Query: 467 LV 468 V Sbjct: 394 RV 395 >gi|76808795|ref|YP_333722.1| ribosomal protein S12 methylthiotransferase [Burkholderia pseudomallei 1710b] gi|126454903|ref|YP_001066463.1| putative tRNA modifying protein [Burkholderia pseudomallei 1106a] gi|134277408|ref|ZP_01764123.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei 305] gi|167738299|ref|ZP_02411073.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei 14] gi|167815485|ref|ZP_02447165.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei 91] gi|167845434|ref|ZP_02470942.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei B7210] gi|217421309|ref|ZP_03452813.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia pseudomallei 576] gi|242314138|ref|ZP_04813154.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei 1106b] gi|254179580|ref|ZP_04886179.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei 1655] gi|254189030|ref|ZP_04895541.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei Pasteur 52237] gi|254259851|ref|ZP_04950905.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia pseudomallei 1710a] gi|254297456|ref|ZP_04964909.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei 406e] gi|123744448|sp|Q3JRT1|RIMO_BURP1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065308|sp|A3NVU2|RIMO_BURP0 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|76578248|gb|ABA47723.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei 1710b] gi|126228545|gb|ABN92085.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei 1106a] gi|134251058|gb|EBA51137.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei 305] gi|157807873|gb|EDO85043.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei 406e] gi|157936709|gb|EDO92379.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei Pasteur 52237] gi|184210120|gb|EDU07163.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei 1655] gi|217395051|gb|EEC35069.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia pseudomallei 576] gi|242137377|gb|EES23779.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei 1106b] gi|254218540|gb|EET07924.1| MiaB-like tRNA modifying enzyme YliG [Burkholderia pseudomallei 1710a] Length = 463 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 127/465 (27%), Positives = 210/465 (45%), Gaps = 50/465 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ +G Sbjct: 21 SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77 Query: 91 KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146 + E G V+V GC+ A G ++ P V V GP + + + + Sbjct: 78 ----LAENGK--VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPHAVGEVMQAV-HSHLP 130 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K D F L + G A+L I EGC+ C+FC++P RG +SR Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGELVSRP 181 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 +++V+ EA L +GV E+ ++ Q+ +A W G+ L K ++L+ +L Sbjct: 182 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 238 Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRH 310 E+ VRL Y +P + A G L ++PYL +P Q +LK M R Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHAHPEVLKRMKRPA 298 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 A + + + R + PD+ I S FI GFPGETD F +D + + + F YSP Sbjct: 299 NAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIREAELDRVGCFAYSPV 358 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 G + + + ++V+ R + E + VG+ ++VLI++ E G+ Sbjct: 359 EGASANALDGALPDDVREARRARFMEVAEEVSAARIARKVGKTLKVLIDEVNAEGGIGRT 418 Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 +P + VV SK + +G+ + V+IT L+GE+ Sbjct: 419 AADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 463 >gi|325295705|ref|YP_004282219.1| ribosomal protein S12 methylthiotransferase rimO [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066153|gb|ADY74160.1| Ribosomal protein S12 methylthiotransferase rimO [Desulfurobacterium thermolithotrophum DSM 11699] Length = 432 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 132/460 (28%), Positives = 220/460 (47%), Gaps = 47/460 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQG-YERVNSMDDADLIVLNTC-HIREKAAEKVYS 82 ++ V S GC N+ D+ + + + G V+++ DAD+I++NTC I+ E + Sbjct: 2 KKIAVISLGCPKNLVDTENIVGLLKATGNVVFVDNLKDADIIIVNTCGFIQPAKEESIDE 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L I K S K VVVAGC+ Q EE+ R P V+V +G Sbjct: 62 ILNAIEEKKESPEK-----KVVVAGCLYQRYKEELKRELPEVDVFIG------------- 103 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYT 198 V + + SVE + V Y + +T A+L I EGC CT+C +P Sbjct: 104 ------VDEIEKSVEKILNQKIAVQKPYLLREILTPPHIAYLKISEGCSNACTYCAIPLI 157 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG SR + + V+EA++L D GV E+ ++ Q+ A+ GEK LL L +I+ Sbjct: 158 RGKLKSRPIEEAVEEAKRLADKGVKELYVIAQDTTAYLYD--KGEKEGLVKLLEKLEKIE 215 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ +R ++P +SD LI + + ++ Y +P Q ++++L SM R++T + + Sbjct: 216 GIDWIRLMYTYPSHISDSLIDFVANSEKVLKYFDVPFQHINNKVLASMGRKYTRKDAEVL 275 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ID++R+ PDI + + FI+GFP E + +F + + I + A FKYS T + Sbjct: 276 IDKLRNRIPDITLRTTFIIGFPTEGEREFEELLSFIKDIEFDWAGFFKYSREEDTAAYKL 335 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGKEKGKLVGRSPW 434 + DE VK RL ++ E Q S + +G+ +++++ +E V + Sbjct: 336 GDIPDE-VKESRLNLIE----EVQYSIYEKKQMQLLGKEFDLIVDSPSEEMPGFVEARSY 390 Query: 435 -----LQSVVLNSKNHNIGDIIKVRITDVKIST-LYGELV 468 + +V N G+I+K IT + S L GE + Sbjct: 391 KNAYEIDGIVYLKGNFKPGEIVKAEITALASSVDLIGEPI 430 >gi|325270230|ref|ZP_08136837.1| Fe-S oxidoreductase [Prevotella multiformis DSM 16608] gi|324987531|gb|EGC19507.1| Fe-S oxidoreductase [Prevotella multiformis DSM 16608] Length = 450 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 116/410 (28%), Positives = 189/410 (46%), Gaps = 27/410 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF+ + GC++N ++ ++ G + AD+ ++NTC + E A K + Sbjct: 13 RFY--TLGCKLNFSETSTFARTLYNMGVREAKKGEQADICLINTCSVTEVADHKCRQVIH 70 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R+ +++ V+V GC AQ E + V++V+G L + L A Sbjct: 71 RM-------VRQNPGAFVIVTGCYAQLESAAVAGIEG-VDLVLGSNEKADLIQYLSDA-- 120 Query: 146 GKRVVDTDYSVEDKFERLSI-------VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 +V + E + E S+ +R FL +Q+GC+ FCT+C +PY Sbjct: 121 WNKVEAGKETTEGQAEYHSVRTKDIRSFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPYA 180 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC--TFSDLLYSLSE 256 RG + +++ +V +A + G EI L G N+ + GE +F DL+ +L Sbjct: 181 RGFSRNPTIASLVSQAEEAAREGGKEIVLTGVNIGDF------GETTGESFLDLVKALDR 234 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 ++G+ R R ++ P + D LI MP+ H+P+QSGSD +LK M+RR+ + Sbjct: 235 VEGIRRFRISSLEPDLIDDDLIAYCARSRAFMPHFHIPLQSGSDEVLKLMHRRYDTALFA 294 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 I I+ + PD I D +VG GE + F +D + Q F YS R GT Sbjct: 295 HKIRFIKEMMPDAFIGVDVMVGSRGERPEYFEDCYRFLDSLPVTQLHVFPYSERPGTSAL 354 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 ++ VD+ K R L K E+ +F A +GQ +VL EK + K Sbjct: 355 SIPYVVDDREKKRRAHRLLKLSDEKTRAFYAARIGQEADVLFEKAARGKA 404 >gi|53719172|ref|YP_108158.1| ribosomal protein S12 methylthiotransferase [Burkholderia pseudomallei K96243] gi|81379851|sp|Q63UQ8|RIMO_BURPS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|52209586|emb|CAH35539.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] Length = 459 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 127/465 (27%), Positives = 210/465 (45%), Gaps = 50/465 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ +G Sbjct: 17 SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 73 Query: 91 KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146 + E G V+V GC+ A G ++ P V V GP + + + + Sbjct: 74 ----LAENGK--VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPHAVGEVMQAV-HSHLP 126 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K D F L + G A+L I EGC+ C+FC++P RG +SR Sbjct: 127 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGELVSRP 177 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 +++V+ EA L +GV E+ ++ Q+ +A W G+ L K ++L+ +L Sbjct: 178 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 234 Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRH 310 E+ VRL Y +P + A G L ++PYL +P Q +LK M R Sbjct: 235 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHAHPEVLKRMKRPA 294 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 A + + + R + PD+ I S FI GFPGETD F +D + + + F YSP Sbjct: 295 NAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIREAELDRVGCFAYSPV 354 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 G + + + ++V+ R + E + VG+ ++VLI++ E G+ Sbjct: 355 EGASANALDGALPDDVREARRARFMEVAEEVSAARIARKVGKTLKVLIDEVNAEGGIGRT 414 Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 +P + VV SK + +G+ + V+IT L+GE+ Sbjct: 415 AADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 459 >gi|254468793|ref|ZP_05082199.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [beta proteobacterium KB13] gi|207087603|gb|EDZ64886.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [beta proteobacterium KB13] Length = 441 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 120/422 (28%), Positives = 207/422 (49%), Gaps = 64/422 (15%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ F+ S GC D+ ++ +QGYE +S D +D++V+NTC + A E+ Sbjct: 6 IPKIGFI-SLGCPKAGSDTEKIMTRVKTQGYEISSSYDKSDVVVVNTCGFIDSAIEESL- 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRR----------SPIVNVV--V 128 N + +K G+ V+V GC+ + G EE + +V+++ V Sbjct: 64 ------NTIDEALKSNGN--VIVTGCLGEKRGIIEERFKNLIAITGSEADKEVVDIINKV 115 Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188 P+ + +L+ ++ G R+ + Y A++ I EGC+ Sbjct: 116 APKPHDSFIDLIPKS--GLRLTPSHY-----------------------AYIKISEGCNH 150 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDG 242 C+FC++P RG SR+ ++ EA+ L+D+GV E+ ++ Q+ +A+ + DG Sbjct: 151 KCSFCIIPSMRGKLASRTPEDILSEAQNLVDSGVTELIIISQDTSAYGVDFKVKQSFWDG 210 Query: 243 EKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301 K DL + E+K + +R+ +P D +I+ D + ++PYL +P Q S + Sbjct: 211 -KPVKRDLYHLAKELKKFGIWVRFHYIYPYPHIDHMIELM-DEETILPYLDVPFQHASPK 268 Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361 ILKSM R A + + I R + P+IA+ S FIVG+PGETD DF +D + + Sbjct: 269 ILKSMKRPADAEDNLKRIQAWRQINPNIALRSTFIVGYPGETDHDFEQLIDFIKEANLDH 328 Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI 418 F+YS G M +Q+ + VK E RL+ QK L EQ++ + +G I V++ Sbjct: 329 VGCFEYSNVEGATAKLMSDQIPDIVKKERYNRLMETQKTLSEQKLK---SLIGSIQHVVV 385 Query: 419 EK 420 ++ Sbjct: 386 DE 387 >gi|297620406|ref|YP_003708543.1| MiaB-like tRNA modifying enzyme [Waddlia chondrophila WSU 86-1044] gi|297375707|gb|ADI37537.1| MiaB-like tRNA modifying enzyme [Waddlia chondrophila WSU 86-1044] Length = 458 Score = 159 bits (403), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 131/453 (28%), Positives = 225/453 (49%), Gaps = 37/453 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + GYE ++++AD IV+NTC + + ++ L I + Sbjct: 28 SLGCPRNLVDSEVMLGILLKAGYEPSQTLEEADHIVINTCGFLKASRDES---LQTINDA 84 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 R KEG V+V GC+ Q+ E I SP V+ +G + + + G++V Sbjct: 85 LKQR-KEGAK--VIVTGCMVQSHKEMIT--SP-VDYFLGSGDVEGILDAVRSGEKGEQVT 138 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +E +I + A+L I EGC K C +C++P +G S+ +QV Sbjct: 139 SAKSYLEAGEVPRTISTPNH------YAYLKIAEGCRKQCAYCIIPTIKGRLKSKPAAQV 192 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSH 269 + E R L++ G E+ L+ Q++ W GK + ++ LL L +++G LR + Sbjct: 193 LKEFRVLLNQGAKEVILIAQDLGDW-GKDIGFKRTDGLIHLLKELLKVEGDYWLRLMYLY 251 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR--- 326 P +++ LI+ + + PY+ +P+Q +D +LKSM H A QII I ++R Sbjct: 252 PDEITGELIQLMKEEPRICPYVDMPIQHVNDNMLKSM---HRATHRAQIIGTIETMRKQI 308 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDI+I + IVGFPGET++ F +++ F++S G+ + EQ+ E V Sbjct: 309 PDISIRTSLIVGFPGETEEQFLELAQFLEEQRLDNVGVFQFSREPGSHAYGLPEQIAEEV 368 Query: 387 KA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRSPWLQSV 438 K +RL+ +Q+ + EQ++ VG++++V+IE + E G+ G+ P + Sbjct: 369 KQDRYDRLMQIQQHVVEQEMR---KWVGRVLDVVIEGYHPETRVLMVGRHRGQCPEIDGQ 425 Query: 439 VLNSKNHNI---GDIIKVRITDVKISTLYGELV 468 VL + + + G +V ITD+ L G ++ Sbjct: 426 VLINDSRGVDAFGKRYRVEITDISGYDLVGRVI 458 >gi|288962243|ref|YP_003452538.1| hypothetical protein AZL_d01680 [Azospirillum sp. B510] gi|288914509|dbj|BAI75994.1| hypothetical protein AZL_d01680 [Azospirillum sp. B510] Length = 439 Score = 159 bits (403), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 139/455 (30%), Positives = 214/455 (47%), Gaps = 47/455 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GYE S D AD++++NTC + A ++ +G Sbjct: 10 SLGCPKALVDSERILTRLRAEGYEISPSYDGADVVLVNTCGFLDSAKKESLDAIGEA--- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 IKE G V+V GC+ E + I + P V V GP Y ++ V Sbjct: 67 ----IKENGR--VIVTGCMG-VESDLIRQIHPDVLAVTGPHQYEQV---------VSAVH 110 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D + F L +G R A+L I EGC+ C+FC++P RG +SR + V Sbjct: 111 DAVPPTHNPFTDLVPPEGLRLTPRHY-AYLKISEGCNNRCSFCIIPSLRGDLVSRPIHSV 169 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-------RGKGLDGE-KCTFSDLLYSLSEIKGLVR 262 + EA KL GV E+ ++ Q+ +A+ K D E + F DL L+ VR Sbjct: 170 LREAEKLAVAGVKELLVISQDTSAYGVDVKYKTEKWYDREVRTRFFDLCNELANFDLWVR 229 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G + +PYL +P Q S +LK+M RR A E + +DRI Sbjct: 230 LHYVYPYPHVDEVIPLMAEGKI---LPYLDIPFQHASPTVLKAM-RRPAAQEKQ--LDRI 283 Query: 323 RSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R R P + + S FI GFPGET++DF+ +D + + + FKY P G +++ Sbjct: 284 RKWRDECPHLVLRSTFITGFPGETEEDFQFMLDWLKEAQLDRVGCFKYEPVEGATANDLP 343 Query: 380 EQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPW 434 V E VK ER + QK + +++ VG + VLI++ +E G+ +P Sbjct: 344 GAVPEEVKQERWERFMETQKAISAERLQQK---VGYTLGVLIDEVDEEGAIGRSYADAPE 400 Query: 435 LQ-SVVLNSKNH-NIGDIIKVRITDVKISTLYGEL 467 + +V LN + GD++ V I L+G + Sbjct: 401 IDGNVFLNGETGLKPGDMVDVTIEHADEYDLWGSV 435 >gi|206602637|gb|EDZ39118.1| RNA modification enzyme, MiaB family [Leptospirillum sp. Group II '5-way CG'] Length = 483 Score = 159 bits (403), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 119/415 (28%), Positives = 205/415 (49%), Gaps = 30/415 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ D+ M +G+ + +++A++IV+NTC A ++ L L Sbjct: 41 SLGCPKNLVDTETMIHSLSEKGFRVIPDLEEAEVIVVNTCSFVTDARKESIDTL-----L 95 Query: 91 KNSRIKE-GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + ++ KE G ++V GC+ EE+ P V++++ P + ELL + Sbjct: 96 EMAQYKEIGKAKMLVGTGCLVSRYREELPGLLPEVDMLLSPSEETSIGELLSFPERKNSL 155 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 T + + RKR A+L I EGCD C+FC +P +RG+++SR+ Sbjct: 156 PPTPLIMPSSIP--------FRRKRLTPNHRAYLKISEGCDHTCSFCAIPLSRGLQVSRT 207 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +++E R + D GV E+TL+ Q++ + DGE LL + +I + +R Sbjct: 208 RESLLEEVRMMADEGVREVTLIAQDLTRYGSDLEDGE--GLPRLLEEIDKIGRIPWVRLL 265 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P ++D L+K D ++ YL +P Q S +LK MNR ++IDRIR + Sbjct: 266 YAYPTQVTDRLLKVIRDSSTILKYLDIPFQHVSGTVLKRMNRPGNRESTMRLIDRIRRIL 325 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDI + + FIVGFPGET+++F + + F +S GTP +M Q+ + Sbjct: 326 PDITLRTTFIVGFPGETEEEFLEIEEFLKWSRLDHVGVFPFSREEGTPSFDMDGQIPARL 385 Query: 387 KAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSP 433 K + RL+ +QK + ++ +G+++ VLIE ++ G+L G +P Sbjct: 386 KTQRRKRLMGVQKAISLEK---KKDWLGKVMPVLIEGPSEQSPLILSGRLPGMAP 437 >gi|254446032|ref|ZP_05059508.1| RNA modification enzyme, MiaB family [Verrucomicrobiae bacterium DG1235] gi|198260340|gb|EDY84648.1| RNA modification enzyme, MiaB family [Verrucomicrobiae bacterium DG1235] Length = 427 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 106/390 (27%), Positives = 195/390 (50%), Gaps = 18/390 (4%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN ++L +E +GY+ V + ADL ++NTC + A K R + Sbjct: 1 MNQSETLLIEQGLQERGYDIVPFGEAADLGIINTCTVTNLADSKC-------RQTIRQFV 53 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 ++ + V GC +Q +EI V++++G Q + + + + + K V+ + Sbjct: 54 RKNPEAYTAVIGCYSQMGSKEIAEIGG-VDLIIGNQEKMSVIDYIGQEKNEKPVIVREKI 112 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 ++ F + D +N++ A L IQ+GC C+FC++P+ RG +R + +++EAR Sbjct: 113 SQEDFTIHNFGDIPFNQR----ANLKIQDGCSFVCSFCIIPFARGAARAREMGNLLEEAR 168 Query: 216 KLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275 + + G+ EI + G N+ + KG +L L+ ++G+ R+R ++ P + Sbjct: 169 QKAEQGIREIVITGVNIGTYDTKG-----GGLLKVLEGLNAVEGIDRIRISSIEPTTIPT 223 Query: 276 CLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334 L D L+P+ H+P+QSG D++LK M RR++ EY + + P + + SD Sbjct: 224 ELFGLMNDPQHALLPFFHIPLQSGCDKVLKEMRRRYSVGEYLEFLHLAHDNVPGLYVGSD 283 Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL 394 +VGFPGET++DF+ T + + F YS R GT + +QV+ +A R L Sbjct: 284 IMVGFPGETEEDFQETCRVFLDNPFDFCHVFSYSERKGTVAARREDQVEIPERARRSAYL 343 Query: 395 QKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 ++ +++ F ++ +G+ + VL E E Sbjct: 344 RRLSAKKRYDFYESYLGKEMRVLFENPKPE 373 >gi|285808313|gb|ADC35844.1| MiaB-like tRNA modifying enzyme YliG [uncultured bacterium 89] Length = 495 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 127/453 (28%), Positives = 215/453 (47%), Gaps = 33/453 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 S GC N+ DS M ++G+E + D A+++V+NTC + A E V + L Sbjct: 22 SLGCPKNLVDSEVMMGELAARGHELTSQPDQAEVLVVNTCSFIDPAKKESVDTILEMAEY 81 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K+ R ++ ++VAGC+ + ++I ++ P V+ V+G + L E Sbjct: 82 KKSGRARK-----LIVAGCLVERYRDDIRKQMPEVDAVIGTNELDSIVALCEDGA-ALSA 135 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 Y D R+ G Y A++ I EGCD CTFCV+P RG SR Sbjct: 136 EPAPYLYHDLTPRVLATPGHY-------AYIKIAEGCDHPCTFCVIPQYRGNFRSRRFES 188 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR--LRYTT 267 VV EA +L GV E+ L+GQ+ + G+ L G K ++LL L++I+ + +R Sbjct: 189 VVAEATRLFGQGVRELNLIGQDTTCF-GEDL-GIKDGLAELLARLAQIETPWQKWVRXLY 246 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++ L+ + L+ Y+ +P+Q S +LK M R + + +++DR+R P Sbjct: 247 AYPNKVTQKLLDTIAEYPALVKYIDMPLQHASGAVLKRMKRGASGDIFLKLLDRMRRTIP 306 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV- 386 + I + IVGFPGET DF D V + F YS + ++ +VD Sbjct: 307 GVTIRTSMIVGFPGETAKDFEELCDFVQAAQFDCLGVFPYSDEDTSASFHLDGKVDGRTI 366 Query: 387 --KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVV 439 + +L+ LQ+K+ ++ + VG VL+E E +G++ G++P + V Sbjct: 367 YRRKRKLMSLQRKIARKR---SRRLVGSETTVLVEGRSPETDLLWQGRMPGQAPEIDGVT 423 Query: 440 L----NSKNHNIGDIIKVRITDVKISTLYGELV 468 L G++ ++RIT+ + G L+ Sbjct: 424 LINDFEGGEPRAGEMRRLRITEAHDYDVVGTLL 456 >gi|167725836|ref|ZP_02409072.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei DM98] Length = 453 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 127/470 (27%), Positives = 211/470 (44%), Gaps = 60/470 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ +G Sbjct: 11 SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 67 Query: 91 KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146 + E G V+V GC+ A G ++ P V V GP + + + + Sbjct: 68 ----LAENGK--VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPHAVGEVMQAV-HSHLP 120 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K D F L + G A+L I EGC+ C+FC++P RG +SR Sbjct: 121 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGELVSRP 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 +++V+ EA L +GV E+ ++ Q+ +A W G+ L K ++L+ +L Sbjct: 172 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 228 Query: 256 EIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 E+ VRL Y +P M+ +K H ++PYL +P Q +LK Sbjct: 229 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQAPLKGH-----VLPYLDVPFQHAHPEVLKR 283 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R A + + + R + PD+ I S FI GFPGETD F +D + + + F Sbjct: 284 MKRPANAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIREAELDRVGCF 343 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 YSP G + + + ++V+ R + E + VG+ ++VLI++ E Sbjct: 344 AYSPVEGASANALDGALPDDVREARRARFMEVAEEVSAARIARKVGKTLKVLIDEVNAEG 403 Query: 426 --GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 G+ +P + VV SK + +G+ + V+IT L+GE+ Sbjct: 404 GIGRTAADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 453 >gi|255533406|ref|YP_003093778.1| MiaB-like tRNA modifying enzyme YliG [Pedobacter heparinus DSM 2366] gi|255346390|gb|ACU05716.1| MiaB-like tRNA modifying enzyme YliG [Pedobacter heparinus DSM 2366] Length = 444 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 128/462 (27%), Positives = 219/462 (47%), Gaps = 42/462 (9%) Query: 22 IVP---QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREK 75 IVP + V + GC N YDS + + V N M D++V+NTC + Sbjct: 9 IVPVKKPKINVITLGCSKNTYDSEVLMGQLRGNSMDVVHEANKMGKDDIVVINTCGFIDN 68 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134 A ++ + L+ S++KE G + V+V GC+++ E+ V+ G Sbjct: 69 AKQESIDTI-----LQYSQLKEEGKVGKVIVTGCLSERYKPELEAEITNVDAFFGTNDLN 123 Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 L L +Y E ERL + A+ I EGC++ C+FC Sbjct: 124 NLLHAL----------GANYKHELIGERLLTTPSHF-------AYFKIAEGCNRPCSFCA 166 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYS 253 +P RG +SR + ++V+EA+ L G E+ L+ Q++ + GLD K +LL Sbjct: 167 IPLMRGKHVSRDMQELVNEAKILAAGGTKELILIAQDLTYY---GLDIYGKRNLDELLRR 223 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ G+ +R ++P ++ A + + + YL +P+Q +D +LKSM R T Sbjct: 224 LSDVNGIEWIRLQYAYPSGFPMEILDAMNERENICKYLDMPLQHITDNMLKSMRRGITKQ 283 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + I+++IR P IA+ + I G+PGET+ DF MD V++ + + F YS T Sbjct: 284 KTIDIVNQIRDKVPGIAMRTTLICGYPGETEQDFEEMMDWVEETRFDRLGCFTYSHEEKT 343 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR-- 431 ++++ V + +K ER+ + + + N VG+ +VL+++ KE +GR Sbjct: 344 HAHSLVDDVPDEIKQERVDAIMELQQGISYDINQEKVGKTYKVLVDR--KEGAFFIGRTE 401 Query: 432 --SPWLQSVVLNSKNHNI---GDIIKVRITDVKISTLYGELV 468 SP + + VL + G +KV+I + LYG++V Sbjct: 402 FDSPEVDNEVLIDASTGYAANGSFVKVKIDRAEDFDLYGQIV 443 >gi|255020110|ref|ZP_05292181.1| Ribosomal protein S12p Asp88 methylthiotransferase [Acidithiobacillus caldus ATCC 51756] gi|254970472|gb|EET27963.1| Ribosomal protein S12p Asp88 methylthiotransferase [Acidithiobacillus caldus ATCC 51756] Length = 454 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 138/467 (29%), Positives = 208/467 (44%), Gaps = 48/467 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P R + S GC D+ R+ ++GY V +ADL+++NTC + A ++ Sbjct: 11 PPRIGMVSLGCPKAGSDTERLLTRLRAEGYLLVADYAEADLVLVNTCGFIDAAVQESLDA 70 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCV-AQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + I E G VVV GC+ A+ +GE I R P V V GPQ + R Sbjct: 71 IAEA-------IDENGR--VVVTGCLGAREQGEFIRRAQPKVLAVTGPQQDGATLAAIHR 121 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + D + L G R A+L I EGC++ C+FCV+P RG Sbjct: 122 VLPPR---------HDPLQDLVPPQGLRLTPRHY-AYLKIAEGCNQSCSFCVIPSMRGKL 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSL 254 SR ++ EA L+ G E+ ++ Q+ A+ R DG + +DL SL Sbjct: 172 QSREPGDILREAEALVAAGCRELLIISQDTAAYGSDRRYRTAFADGRPTRAHITDLCTSL 231 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 + + VRL Y +P D L+ D +L PYL +P+Q GS +LK+M R + + Sbjct: 232 AALGAWVRLHYVYPYPH--VDALVDLMADGKIL-PYLDIPLQHGSPAVLKAMRRPAASDK 288 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 I R R PD+ + S FIVGFPGE++ DFR +D + + F YSP G Sbjct: 289 TLDRIARWRRQLPDLTLRSTFIVGFPGESEADFRLLLDFLHAAELDRVGCFSYSPVEGAA 348 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGKEKGKLVG 430 + + + V E VK ER +++ E Q + A VGQ V+++ E G L+ Sbjct: 349 ANALADPVPEVVKEER----RQRFMEVQAEISAARLRRRVGQECLVVVDGF-TESGHLMA 403 Query: 431 RS----PWLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELVV 469 RS P + ++ G + RIT L+G ++ Sbjct: 404 RSAAEAPEIDGIIQLDPPTGGRPAAGQRLWARITGSTTHDLHGTVLA 450 >gi|307294310|ref|ZP_07574154.1| MiaB-like tRNA modifying enzyme YliG [Sphingobium chlorophenolicum L-1] gi|306880461|gb|EFN11678.1| MiaB-like tRNA modifying enzyme YliG [Sphingobium chlorophenolicum L-1] Length = 460 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 138/464 (29%), Positives = 211/464 (45%), Gaps = 56/464 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ S GY+ AD++++NTC + A E+ +G Sbjct: 20 SLGCPKALVDSERILTKLRSDGYQMSADYAGADVVLVNTCGFLDSAKEESLEAIGEA--- 76 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I E G V+V GC+ E E I + P V V G Y + + A Sbjct: 77 ----IAENGR--VIVTGCMGN-EAELIRAKFPQVLAVTGAHQYEAVVNAVHEA------- 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 V + F L + +GG ++L I EGC+ C+FC++P RG SR + V Sbjct: 123 --SPPVPNAFVDL-VPEGGLKLTPRHYSYLKISEGCNHRCSFCIIPSLRGDLASRRVDAV 179 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA KL+ G E+ ++ Q+ +A W+G+ + + L L +G Sbjct: 180 LREAEKLVHAGTKELLIISQDTSAYGVDTRHETRQWKGRDVRAHMTDLARELGQLRTAEG 239 Query: 260 ---LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 VRL Y +P D +I D +L PYL +P Q + +LK+M R A E + Sbjct: 240 TPPWVRLHYVYPYPH--VDQVIPLMAD-GLLTPYLDIPFQHAAPNVLKAMKR--PANEAK 294 Query: 317 QIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 ++DRIR R PDIAI S F+VGFPGET+ DF + +D+ + +F++ P G Sbjct: 295 -VLDRIRKWRDICPDIAIRSSFVVGFPGETEADFDYLLQWLDEAQLDRVGAFRFEPVEGA 353 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKLVGR 431 +++ V E VK ER + +K + A VG+++ V+I++ G+ E G VG Sbjct: 354 AANDLPGAVPEEVKEERYQRIMEKTAAISAAKLQAKVGRVLPVIIDEVGEADEDGS-VGA 412 Query: 432 SPWLQS--------VVLNSKNHNI--GDIIKVRITDVKISTLYG 465 + Q+ V L + G I+ V I D LYG Sbjct: 413 TARSQADAPEIDGNVFLRDVGEGLAPGSILNVLIEDADEHDLYG 456 >gi|195123861|ref|XP_002006420.1| GI21033 [Drosophila mojavensis] gi|193911488|gb|EDW10355.1| GI21033 [Drosophila mojavensis] Length = 554 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 132/467 (28%), Positives = 230/467 (49%), Gaps = 42/467 (8%) Query: 16 QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 + + + ++P Q+ +VK++GC N DS M + GY ++S D+ADL +LN+C ++ Sbjct: 63 KTIYESVIPGTQKVYVKTWGCAHNNSDSEYMAGQLAAYGYN-LSSKDEADLWLLNSCTVK 121 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQT 132 + + RN S ++ G VVVAGCV Q A + LR I+ V Q Sbjct: 122 NPSEDT-------FRNEIESGMRNGKH--VVVAGCVPQGAPKSDYLRGLSIIGV----QQ 168 Query: 133 YYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 R+ E++E G V + + V+ + + + RK + ++I GC CT Sbjct: 169 IDRVVEVVEETLKGHSVRLLQNKKVQGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCT 228 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 +C + RG S +++V+ AR+ D G CEI L ++ A+ G+ + + +LL Sbjct: 229 YCKTKHARGDLASYPPAEIVERARQSFDEGCCEIWLTSEDTGAY-GRDIGS---SLPELL 284 Query: 252 YSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 + L E+ G+ Y H +++ L + +LH+PVQSGSD +L Sbjct: 285 WQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYAFLHVPVQSGSDSVL 339 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 M R + ++ ++D +RS P + I++D I GFP ET++DF TM L K + F Sbjct: 340 GEMKREYCRKDFEHVVDFLRSRVPGLTIATDIICGFPTETEEDFEETMSLCKKYQFPSLF 399 Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKH 421 ++ PR GTP + M E++ N+ +R K+L + S+ GQ+ VL+ + Sbjct: 400 INQFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAGREGQVYTVLVTEI 454 Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +K VG + + V+L +++ +G ++VRIT ++ E++ Sbjct: 455 SHDKLHYVGHNKSYEQVLLPMRDNLLGTRVRVRITGTSKFSMMAEIL 501 >gi|29347563|ref|NP_811066.1| putative Fe-S oxidoreductase [Bacteroides thetaiotaomicron VPI-5482] gi|253572024|ref|ZP_04849428.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29339463|gb|AAO77260.1| putative Fe-S oxidoreductase [Bacteroides thetaiotaomicron VPI-5482] gi|251838204|gb|EES66291.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 443 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 115/396 (29%), Positives = 197/396 (49%), Gaps = 28/396 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 +K+ VVV GC AQ + ++ + V+VV+G + L + L + G+ Sbjct: 73 ----VKQHPGAFVVVTGCYAQLKPGDVAKIKG-VDVVLGAEQKGDLLQYLGDLHKHEEGE 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 T + S D R R FL +Q+GCD FC++C +P+ RG + ++ Sbjct: 128 AFTTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTV 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++AR+ G EI L G N+ + GK GE TF DL+ +L +++G+ R R ++ Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--TFFDLVKALDQVEGIERYRISS 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D +I+ MP+ H+P+QSG D +LK M RR+ + + +I+ V P Sbjct: 237 IEPNLLTDEIIEFVSRSRRFMPHFHIPLQSGCDEVLKLMRRRYDTALFASKVKKIKEVMP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDE 384 D I D IVG GET++ F + + Q F YS R GT + + ++ Sbjct: 297 DAFIGVDVIVGTRGETEEYFEQAYQFISGLDVTQLHVFSYSERPGTQALKIDYVVSPEEK 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + +++RLL L E+ +F +GQ ++VL+EK Sbjct: 357 HQRSQRLLTLSD---EKTRAFYTRHIGQTMQVLMEK 389 >gi|296197315|ref|XP_002806724.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated protein 1-like 1-like [Callithrix jacchus] Length = 579 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 120/442 (27%), Positives = 210/442 (47%), Gaps = 37/442 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 64 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDH---FR 120 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K +V+A CV QA+ + + ++G Q R+ E++E Sbjct: 121 NSIKKAQEENKK------IVLAVCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 171 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V +D +RL + +D RK + ++I GC CT+C + RG Sbjct: 172 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 230 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257 S + ++VD A++ GVCEI L ++ A+ R G D LL+ L E+ Sbjct: 231 ASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 285 Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 G+ Y H +M+ L + + +LH+PVQS SD +L M R + Sbjct: 286 AMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHVPVQSASDSVLMEMKREYCVA 340 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 ++++++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ PR GT Sbjct: 341 DFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGT 400 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 P + +EQV VK +R L + S +G+ +VL+ + + V + Sbjct: 401 PAAK-IEQVPAQVKKQRTKDLSRVF--HSYSPYHHKIGERQQVLVTEESFDSKFYVAHNR 457 Query: 434 WLQSVVLNSKNHNIGDIIKVRI 455 + + V++ +G +++V I Sbjct: 458 FYEQVLVPKNPAFMGKMVEVDI 479 >gi|296273084|ref|YP_003655715.1| MiaB-like tRNA modifying protein [Arcobacter nitrofigilis DSM 7299] gi|296097258|gb|ADG93208.1| MiaB-like tRNA modifying enzyme [Arcobacter nitrofigilis DSM 7299] Length = 421 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 119/436 (27%), Positives = 210/436 (48%), Gaps = 30/436 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ +F K++GC+ NV+D+ M M + +E A+++V+N+C + A + Sbjct: 8 PKVYF-KTFGCRTNVFDTQVM--MSNLKDFEITQDEKSANVVVINSCTVTNSADSTARGY 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + + L N VV GC +GE + + V+ + G + ELL+ Sbjct: 65 INSLNKLPNKP-------RVVFTGCGVWTKGETLFKEDK-VDSLFGHSEKENINELLKNE 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 D ++ E +IV+ + R AF+ IQEGCD C++C++PY RG Sbjct: 117 ERFFNAGDLEHIDE------TIVEEFVGKSR---AFIKIQEGCDFRCSYCIIPYVRGDAR 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S S +++++ L NG E L G NV ++ K + + + LL +S IKG+ R+ Sbjct: 168 SYSEDKILEQITTLASNGFGEFILTGTNVGSYGKK----KHTSLAKLLKKISLIKGVRRI 223 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R + P + D K D + +LH+ +Q S ++L+ MNRR+ + ++ + ++ Sbjct: 224 RMGSIEPIQIDDEF-KEIIDEPFMARHLHIALQHTSKKMLEIMNRRNKVLKDLELFEFLK 282 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 A+ +DFIVG PGETD+ ++ ++ + K +F YS R GTP + M EQV Sbjct: 283 D--KGYALGTDFIVGHPGETDELWKEAIENLHKFPLTHVHAFTYSKRDGTPSATMKEQVK 340 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 ++ R L + E+ +F +EVLIE+ ++ GK +G + + + S Sbjct: 341 GDISKARYNELVSIIDEKNFNFRKNN-KTTLEVLIEQ--EKNGKYIGLDQYFNQIEIQSN 397 Query: 444 NHNIGDIIKVRITDVK 459 +GD + + + K Sbjct: 398 ADLVGDWVFIENYEAK 413 >gi|89890435|ref|ZP_01201945.1| MiaB family tRNA modifying enzyme [Flavobacteria bacterium BBFL7] gi|89517350|gb|EAS20007.1| MiaB family tRNA modifying enzyme [Flavobacteria bacterium BBFL7] Length = 438 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 128/448 (28%), Positives = 218/448 (48%), Gaps = 35/448 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V + GC NVYDS + + G + V+ ++ +++V+NTC + A E+ + + Sbjct: 17 VITLGCSKNVYDSEVLMGQLKASGKDVVHE-EEGNIVVINTCGFIDNAKEESVNTILDFV 75 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 KNS G V V+GC+++ ++ + P V+ G LP LL + Sbjct: 76 ERKNS----GEVDQVFVSGCLSERYKPDLQKEIPDVDQYFGTT---ELPSLL-------K 121 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + DY E ER++ Y A+ I EGCD+ C+FC +P RG S + Sbjct: 122 ALGADYKHELIGERVTTTPKNY-------AYFKIAEGCDRPCSFCAIPLMRGGHKSTPIE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 +V EA KL NGV E+ L+ Q++ + GLD +K +DLL L +++G+ +R Sbjct: 175 HLVIEAEKLAANGVKELILIAQDLTYY---GLDLYKKRRLADLLKELVKVEGIEWIRMHY 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 + P +++ + YL +P+Q S +LKSM R T + +++ R+ P Sbjct: 232 AFPTGFPMDVLEVMKSEPKVCNYLDIPLQHISTPVLKSMRRGTTFEKTNALLEDFRATVP 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 ++AI + IVG+PGET++D++ V + + F YS T + + V E VK Sbjct: 292 EMAIRTTLIVGYPGETEEDYQILKQWVKDQRFERMGCFTYSHEENTHAYKLEDDVPEEVK 351 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS-VVLNS 442 ER + + + N +GQI +V+I++ K VGR SP + + V++++ Sbjct: 352 QERANEIMEIQSQISWELNQHKIGQIFKVIIDR--KRGNYFVGRTEFDSPDVDNEVLIDA 409 Query: 443 KNH--NIGDIIKVRITDVKISTLYGELV 468 + H ++G + V IT+ + LYG V Sbjct: 410 EKHYLSVGSFVNVTITEAEDFDLYGTPV 437 >gi|229496636|ref|ZP_04390350.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] gi|229316533|gb|EEN82452.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] Length = 445 Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 128/411 (31%), Positives = 196/411 (47%), Gaps = 28/411 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF + GC++N ++ + G AD+ ++NTC + A K + + R Sbjct: 15 FF--TLGCKLNFAETSTIGRQLRELGVVLATEGSSADICIINTCSVTSAADRKDRTLIHR 72 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + ++E VVV GC AQ +GEEIL P VN+VVG + E L G Sbjct: 73 V-------VRENPHAAVVVMGCYAQLKGEEILN-IPGVNIVVGAGRKSEVVEHLITFFSG 124 Query: 147 KRVVDTD---YSVE----DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + V T+ Y+ E +FE D +R R FL +Q+GC+ CT+C +P R Sbjct: 125 EGVTPTNKHHYAGERIHLHRFEEGCSSD---DRTR---HFLKVQDGCNYGCTYCTIPKAR 178 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G+ + S++ +V +A ++ G EI L G N+ + G+ GE+ F DL+ +L ++ G Sbjct: 179 GVSRNGSIASLVAQAERVAQEGGKEIVLTGVNIGDF-GRS-TGEQ--FVDLVRALDQVNG 234 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R R ++ P +SD L++ MP+ HLP+QSGSD +L M RR+ + + Sbjct: 235 IERYRISSLEPDLLSDELLEVVAQSRSFMPHWHLPLQSGSDTVLALMKRRYRTQLFSDRL 294 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 RI+ + P I D IVG GET + F ++ ++ Q F YS R GTP ++ Sbjct: 295 ARIKEMMPAAFIGVDVIVGMRGETLEFFEESLAYLEGQPVTQLHVFSYSERSGTPALSIP 354 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 V K ER L + SF G+ VL E H GK+ G Sbjct: 355 LVVSPEEKKERSKALIDLSNRKLSSFYKEHEGEKRPVLWE-HSCVDGKMYG 404 >gi|218295686|ref|ZP_03496482.1| 2-alkenal reductase [Thermus aquaticus Y51MC23] gi|218243845|gb|EED10372.1| 2-alkenal reductase [Thermus aquaticus Y51MC23] Length = 224 Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 82/210 (39%), Positives = 123/210 (58%) Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R+R+ TSHP + +D +I+A + + Y+HLPVQSGSDR+L+ M R + Y + Sbjct: 2 GIPRVRFLTSHPVNFTDDIIEAIAETPAITRYIHLPVQSGSDRVLRRMAREYRRAHYLER 61 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I +IR PD+ +S+D IVGFPGET++DF+ T+ L D++GY QA+ F YSPR GTP Sbjct: 62 IRKIREALPDVVLSTDIIVGFPGETEEDFQETLSLYDEVGYDQAYMFIYSPRPGTPAYKH 121 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 + + VK ERL L +K +E N VG+ +EVL+ KE+G + G V Sbjct: 122 FQDLPREVKVERLQRLIEKQKEWSYRRNLEWVGKKVEVLVRGVAKEEGYVQGHDRGNHPV 181 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ + + +V I L+GE+V Sbjct: 182 LIPAHQAPTPGLYQVEIKQATPHLLFGEVV 211 >gi|224417634|ref|ZP_03655640.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT 98-5491] gi|313141180|ref|ZP_07803373.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Helicobacter canadensis MIT 98-5491] gi|313130211|gb|EFR47828.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Helicobacter canadensis MIT 98-5491] Length = 246 Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 93/256 (36%), Positives = 141/256 (55%), Gaps = 17/256 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++++ GC MN DS + ++ + Y +ADLI++NTC +REK +K++S Sbjct: 3 KKLYIETLGCAMNERDSEHIIAELEEKENYTLTEDPKEADLILINTCSVREKPEKKLFSE 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G+ +K K G V GC A G EIL++S VN V+G + ++ ++L + Sbjct: 63 IGQYAKIKKEDAKIG------VCGCTASHLGNEILKKSKAVNFVLGARNVSKISQILHKD 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R VD DY + + +N + + I GCDK CT+C+VP+TRG EI Sbjct: 117 RVA--WVDIDYD-----DSTYVFSSKHNST--LKGMINISIGCDKQCTYCIVPHTRGNEI 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S ++ EA+KL+DNG EI LLGQNVN + R D K F+ LL +S+I GL R Sbjct: 168 SIPADLILKEAKKLVDNGTKEILLLGQNVNNYGRRFSNDHRKINFTQLLNEISQINGLER 227 Query: 263 LRYTTSHPRDMSDCLI 278 +R+T+ HP M D I Sbjct: 228 IRFTSPHPLHMDDEFI 243 >gi|114766736|ref|ZP_01445674.1| MiaB-like tRNA modifying enzyme [Pelagibaca bermudensis HTCC2601] gi|114541055|gb|EAU44111.1| MiaB-like tRNA modifying enzyme [Roseovarius sp. HTCC2601] Length = 417 Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 111/362 (30%), Positives = 171/362 (47%), Gaps = 30/362 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+ + G D +V+NTC + +A K + R+R Sbjct: 8 TLGCRLNAYETEAMKALAEEAGV--------GDAVVVNTCAVTAEAVRKARQEIRRLR-- 57 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144 +E + V+V GC AQ + + V+ V+G P T+ L Sbjct: 58 -----RENPEARVIVTGCAAQIDPDSFAAMDE-VDAVIGNSEKMSPDTWAGLSNGF-IGE 110 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K V+ SV + L +DG R R A++ +Q GCD CTFC++PY RG S Sbjct: 111 TEKVQVNDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRS 165 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 VVD+ ++L+ G E+ L G ++ +W G L G DL+ + + + RLR Sbjct: 166 VPAGVVVDQIKRLVQKGYNEVVLTGVDLTSW-GADLPGTP-RLGDLVMRILRLTDVPRLR 223 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ + D L+ A LMP+LHL +Q G D ILK M RRH + + + R Sbjct: 224 ISSIDSIEADDNLMLAIASEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFTEEARR 283 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +R DI +D I GFP ET+ F ++ LV++ F YS R GTP + + +VD Sbjct: 284 LRADITFGADIIAGFPTETEAHFENSLKLVEECSLTWLHVFPYSSRPGTPAAKIPSKVDG 343 Query: 385 NV 386 N Sbjct: 344 NT 345 >gi|300776432|ref|ZP_07086290.1| MiaB family RNA modification enzyme [Chryseobacterium gleum ATCC 35910] gi|300501942|gb|EFK33082.1| MiaB family RNA modification enzyme [Chryseobacterium gleum ATCC 35910] Length = 433 Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 130/455 (28%), Positives = 221/455 (48%), Gaps = 41/455 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ V + GC NVYDS + + G E V+ D D++V+NTC + A E+ + + Sbjct: 9 KKINVVTLGCSKNVYDSEVLMSQLKANGKEVVHE-DRGDIVVINTCGFIDNAKEESINTI 67 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 KN G V V GC+++ ++++ P V+ G + LP LL+ Sbjct: 68 LDYVEAKNR----GEVEKVFVTGCLSERYKPDLIKEIPDVDQYFGTRD---LPVLLKH-- 118 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + DY E ERL+ Y A+L I EGCD+ C+FC +P RG +S Sbjct: 119 -----LGADYKHELVGERLTTTPKHY-------AYLKISEGCDRPCSFCAIPLMRGGHVS 166 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRL 263 + ++V EA+KL G E+ L+ Q++ + GLD +K DLL L +++G+ + Sbjct: 167 TPIEKLVSEAQKLAKKGTKELILIAQDLTYY---GLDLYKKRALGDLLKELVKVEGVEWI 223 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R + P + ++ + + Y+ +P+Q + +LKSM R T + ++ + R Sbjct: 224 RLHYAFPSGFPEDVLDIIREEPKVCNYIDIPLQHINSDLLKSMKRGTTHEKTDALLGKFR 283 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PD+AI + IVG+PGET + F+ D V + + + F YS T + + + Sbjct: 284 EKVPDMAIRTTLIVGYPGETKERFQELKDWVREQKFDRLGCFTYSHEENTTAYVLEDDIP 343 Query: 384 ENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436 + VK E ++ LQ ++ ++ N VG++ + ++ KE +GR SP + Sbjct: 344 QEVKEARVEEIMELQSQISWEK---NQEKVGKVFRCIFDR--KEGNYFIGRTEYDSPDVD 398 Query: 437 SVVLNSKNH---NIGDIIKVRITDVKISTLYGELV 468 + VL S +IG+ +V+IT + LYGELV Sbjct: 399 NTVLVSAEDTYISIGEFAEVKITSAEEFDLYGELV 433 >gi|229496330|ref|ZP_04390050.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] gi|229316908|gb|EEN82821.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] Length = 436 Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 116/415 (27%), Positives = 208/415 (50%), Gaps = 40/415 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTC-HIREKAAEKVYSFLG 85 V + GC N+ DS + F + GY + +++V+NTC I E + + L Sbjct: 8 VITLGCSKNLVDSELLMRRFAAAGYSVRHDPKRITGEIVVINTCGFIGAAQEESINTILA 67 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +R + RI + ++V GC+++ ++ P ++ + G + L Sbjct: 68 FVRAKEEGRIGK-----LIVMGCLSERFRGDLKAEIPEIDALYGKFDWKNL--------- 113 Query: 146 GKRVVD--TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 V D ++ E RL Y A++ I EGCD+ C++C +P G + Sbjct: 114 ---VADLGPSFAPETDTARLLTTPKHY-------AYVKISEGCDRGCSYCAIPLITGRQK 163 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR++ +VDE + L+D G E L+ Q++ ++ G+ L G K + LL LS++ G+ RL Sbjct: 164 SRTIESLVDEVKTLVDEGCSEFQLIAQDLTSY-GRDLGG-KVLLAPLLERLSDLPGVRRL 221 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++P ++ + D + YL + +Q +D +L+ M R T E +++D IR Sbjct: 222 RLHYAYPTQFPREILPIMRERDNICKYLDIALQHATDNMLQKMRRNITQLETERLLDEIR 281 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQV 382 P IA+ + IVG PGET+ DFRA + +++ + + +F YS +GT + +++ Sbjct: 282 KEVPGIALRTTLIVGHPGETEQDFRALCEFIERRQFERMGAFAYSHEVGTYAYKHYQDEI 341 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 E VK ER L+ LQ+ + E +++ + VG EVLI++ +E+ +VGR+ + Sbjct: 342 PEEVKMERLEQLMALQEPIAE---AYSRSLVGTTQEVLIDR--REEEFVVGRTQY 391 >gi|167823898|ref|ZP_02455369.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei 9] gi|167893977|ref|ZP_02481379.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei 7894] gi|167910667|ref|ZP_02497758.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei 112] gi|167918695|ref|ZP_02505786.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei BCC215] gi|226197418|ref|ZP_03792995.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei Pakistan 9] gi|237812521|ref|YP_002896972.1| hypothetical protein GBP346_A2270 [Burkholderia pseudomallei MSHR346] gi|254197896|ref|ZP_04904318.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei S13] gi|169654637|gb|EDS87330.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei S13] gi|225930797|gb|EEH26807.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia pseudomallei Pakistan 9] gi|237503383|gb|ACQ95701.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346] Length = 463 Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 126/465 (27%), Positives = 210/465 (45%), Gaps = 50/465 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ +G Sbjct: 21 SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77 Query: 91 KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146 + E G V+V GC+ A G ++ P V V GP + + + + Sbjct: 78 ----LAENGK--VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPHAVGEVMQAV-HSHLP 130 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K D F L + G A+L I EGC+ C+FC++P RG +SR Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGELVSRP 181 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 +++V+ EA L +GV E+ ++ Q+ +A W G+ L K ++L+ +L Sbjct: 182 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 238 Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRH 310 E+ VRL Y +P + A G L ++PYL +P Q +LK M R Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHAHPEVLKRMKRPA 298 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 A + + + R + PD+ I S FI GFPGETD F +D + + + F YSP Sbjct: 299 NAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIREAELDRVGCFAYSPV 358 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 G + + + ++V+ R + E + +G+ ++VLI++ E G+ Sbjct: 359 EGASANALDGALPDDVREARRARFMEVAEEVSAARIARKIGKTLKVLIDEVNAEGGIGRT 418 Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 +P + VV SK + +G+ + V+IT L+GE+ Sbjct: 419 AADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 463 >gi|49476310|ref|YP_034351.1| hypothetical protein BH16610 [Bartonella henselae str. Houston-1] gi|49239118|emb|CAF28422.1| hypothetical protein BH16610 [Bartonella henselae str. Houston-1] Length = 427 Score = 159 bits (402), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 114/376 (30%), Positives = 184/376 (48%), Gaps = 41/376 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S + S G +++ D A I+ NTC + +A + + + R Sbjct: 7 TFGCRLNSYESEIIRKESTSSGLDQLK--DGA--IIFNTCAVTAEAVRQAKQAIRKAR-- 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144 +E ++V GC AQ E + + V++V+G +Y +LP+ Sbjct: 61 -----RENPHARIIVTGCAAQTEAQNFASMTE-VDLVLGNEDKLHAHSYRQLPD------ 108 Query: 145 FG-----KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 FG K ++ VE + V R R AF+ +Q GCD CTFC++PY R Sbjct: 109 FGINHSEKLRINNIMEVEKIASHM--VSAMEERTR---AFVQVQNGCDHRCTFCIIPYGR 163 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIK 258 G S + V+++ +KL NG+ E+ L G ++ ++ G L G K T L + L I Sbjct: 164 GPSRSVPMGSVIEQIKKLTGNGIQEVVLTGVDLTSY-GHDLPG-KATLGKLTSAILHHIP 221 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L RLR ++ + + LI +MP+LHL +Q+G + ILK M RRH Q Sbjct: 222 DLPRLRLSSIDSIEADEELINLLAYEKRIMPHLHLSLQAGDNMILKRMKRRHLREHAIQF 281 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +R+ RP + +D I GFP ET++ F+ ++ LV+ F +SPR GTP + M Sbjct: 282 CQDLRAKRPTMVYGADLIAGFPTETEEMFQNSLSLVNDCHLTHLHVFPFSPREGTPAARM 341 Query: 379 LEQVDENV---KAERL 391 Q++ + +AERL Sbjct: 342 -PQINRKIIKMRAERL 356 >gi|313672441|ref|YP_004050552.1| SSU ribosomal protein s12p methylthiotransferase [Calditerrivibrio nitroreducens DSM 19672] gi|312939197|gb|ADR18389.1| SSU ribosomal protein S12P methylthiotransferase [Calditerrivibrio nitroreducens DSM 19672] Length = 433 Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 112/421 (26%), Positives = 198/421 (47%), Gaps = 21/421 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N D + G+E V + AD IV+NTC ++ +E V + L N Sbjct: 7 SLGCPKNQTDLEYLIGDLVVDGFEVVTDIKKADAIVVNTCGFLKSAVSEAVENILDVAYN 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K ++V+GC+ + +EI + P V+ G T + E L++ + ++V Sbjct: 67 KKKK-------AKLIVSGCMVERYKDEIAKELPEVDFWTGVGTLKEIAEYLKKGKLTRKV 119 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + + E++ +V+ Y A+L I EGC+ C++C +P+ RG ISR Sbjct: 120 EEKSFYGENRI----LVNHSY------YAYLKISEGCNNRCSYCTIPFIRGNLISRPRES 169 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 ++ EA L+ NGV E+ ++ Q+ + G+D + +LL L + G ++R + Sbjct: 170 IIKEAEDLVKNGVKELIIISQDTTKY---GIDKGRSELIELLTDLVMVDGEFKIRLLYLN 226 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P +S+ L+ + D ++ Y +PVQ D ILK MNR+ + + + + + IRS P+ Sbjct: 227 PDGVSNELVDFVSNQDKMIKYFEIPVQHIDDEILKKMNRKSDSRKIKSVFEYIRSRIPEA 286 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 I + FIVGFPGE D F ++ V++ A F YS GT N ++ Sbjct: 287 FIRTTFIVGFPGEDDVSFEKMVEFVEEYKPDFAGFFPYSREEGTKAYNFEGSCKSREISK 346 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449 R+ +QK ++ + I + +E+ +E L+ Q+ ++ K + +G Sbjct: 347 RISRIQKIQKKNTLERLKRLKKDTITLYVEQPSEENPFLLEGRAEFQAPEIDGKAYILGG 406 Query: 450 I 450 + Sbjct: 407 V 407 >gi|167569764|ref|ZP_02362638.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia oklahomensis C6786] Length = 456 Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 129/477 (27%), Positives = 216/477 (45%), Gaps = 61/477 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P FV S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ Sbjct: 8 PTVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G ++ P V V GP + + Sbjct: 67 IGEA-------LAENGK--VIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHAVGEVMQA 117 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + K D F L + G A+L I EGC+ C+FC++P R Sbjct: 118 V-HSHLPKP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMR 167 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G +SR +++V+ EA L +GV E+ ++ Q+ +A W G+ L K + Sbjct: 168 GDLVSRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMT 224 Query: 249 DLLYSLSEIKG----LVRLRYTTSHPR------DMSDCLIKAHGDLDVLMPYLHLPVQSG 298 +L+ +L E+ VRL Y +P M++ +K H ++PYL +P Q Sbjct: 225 ELVGALGELAAQYGAWVRLHYVYPYPHVDEIIPMMAEGPLKGH-----VLPYLDVPFQHA 279 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + + + + R + PD+ I S FI GFPGET+ F +D + + Sbjct: 280 HPDVLKRMKRPANAEKVLERVQKWREICPDLTIRSTFIAGFPGETEAQFETLLDFIREAE 339 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YSP G + + + ++V+ R + + + VG+ ++VLI Sbjct: 340 LDRVGCFAYSPVEGASANELDGALPDDVREARRARFMEVAEAVSAARIERKVGKTLKVLI 399 Query: 419 EKHGKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ E G+ +P + VV SK + +GD + V+IT L+GE+ Sbjct: 400 DEVNAEGGIGRTAADAPEIDGVVYVEPATKASKRYKVGDFVSVKITGADGHDLWGEV 456 >gi|126727809|ref|ZP_01743639.1| MiaB-like tRNA modifying enzyme [Rhodobacterales bacterium HTCC2150] gi|126702936|gb|EBA02039.1| MiaB-like tRNA modifying enzyme [Rhodobacterales bacterium HTCC2150] Length = 422 Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 114/397 (28%), Positives = 193/397 (48%), Gaps = 32/397 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ + G E + +V+NTC + +A K + ++R Sbjct: 8 TLGCRLNSYETEAMKELSAAAGLE--------NAVVVNTCAVTSEAVRKARQEIRKLR-- 57 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRL---PELLER 142 ++ D ++V GC AQ E E + V+ + T+ ++ P+ + Sbjct: 58 -----RDNPDAKLIVTGCAAQTEPETFASMDEVDQVIGNTEKMLGDTWTKISKGPDFI-- 110 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 K VD SV + L +DG R R A++ +Q GCD CTFC++P+ RG Sbjct: 111 GDVEKVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPFGRGNS 165 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + VV++ ++L+ G EI L G ++ +W G L GE ++ L + L R Sbjct: 166 RSVAAGVVVEQIKRLVGKGFNEIVLTGVDLTSW-GADLPGEPKLGDLVMRILKLVPDLPR 224 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ + L++A LMP+LHL +Q+G D ILK M RRH + + + Sbjct: 225 LRISSIDSIEVDENLLQAIATEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDAIEFCETA 284 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + +RPD+ +D I GFP ET+ F ++ +V F YS R GTP + M QV Sbjct: 285 KKLRPDMTFGADIIAGFPTETEAMFENSLAMVADCDLTWLHVFPYSVRQGTPAARM-PQV 343 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 + + ER L+ + VG++ +VL+E Sbjct: 344 NGALIKERAARLRAAGDIKVAEHLGHQVGKVHQVLME 380 >gi|319957025|ref|YP_004168288.1| miab-like tRNA modifying enzyme [Nitratifractor salsuginis DSM 16511] gi|319419429|gb|ADV46539.1| MiaB-like tRNA modifying enzyme [Nitratifractor salsuginis DSM 16511] Length = 421 Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 114/420 (27%), Positives = 218/420 (51%), Gaps = 31/420 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ + K++GC+ N +D+ M M + +E +AD++V+N+C + A V ++ Sbjct: 4 QKVYFKTFGCRTNQFDTQVM--MSRLKDFELCLEESEADVVVVNSCTVTNGADATVRGYI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +R + ++ VV+AGC A ++GEE+L++ V+ V+G R+ E+L R Sbjct: 62 NALR-------RRHPEVRVVLAGCGAHSKGEELLKQGK-VHGVMGHSEKERINEILHRPE 113 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + D ++ ++V + R AF+ IQEGC+ C++C++P+ RG S Sbjct: 114 GFYEIGDLEHVDS------TVVSEFVGKSR---AFIKIQEGCNFRCSYCIIPFVRGNARS 164 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 Q++++ R+L NG E L G NV ++ R +G + + LL +S+I+G+ R+ Sbjct: 165 HDEEQILEQVRRLAANGFGEFILTGTNVGSYGRDRG-----TSLAKLLKRMSQIRGVRRI 219 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R + P + ++ + + +LH+ +Q SDR+L+ MNRR+ E ++ + + Sbjct: 220 RIGSLEPIQIDAEFMELLAE-PWMARHLHIALQHTSDRMLELMNRRNRYPEDLKLFETLA 278 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LEQV 382 + A+ +DFIVG PGE + ++R M+ +D + +F YSPR GT +++ L + Sbjct: 279 A--KGYALGTDFIVGHPGEGEAEWREAMERIDVLPLTHIHAFTYSPREGTASTSLELPRP 336 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 +V R L + +R++ + F + + + VL+E ++ G G + V++ S Sbjct: 337 RGDVAKARHRELTEAIRQKNLRFRRSH-NEGLTVLVETQ-RQDGLYQGFDQYYNKVLIES 394 >gi|265766970|ref|ZP_06094799.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16] gi|263253347|gb|EEZ24823.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16] Length = 439 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 114/393 (29%), Positives = 194/393 (49%), Gaps = 22/393 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + ADL ++NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADLCIVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K+ VVV GC AQ + ++ + V+VV+G + L + L K Sbjct: 73 ----VKQHPGAFVVVTGCYAQLKPGDVAKIEG-VDVVLGAEQKKDLLQYL--GDLHKHEG 125 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y+ K + +R FL +Q+GCD FC++C +P+ RG + +++ + Sbjct: 126 GEAYTTATK--DIRSFAPSCSRGDRTRFFLKVQDGCDYFCSYCTIPFARGRSRNGTIASL 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++AR+ G EI L G N+ + GK GE TF DL+ +L ++G+ R R ++ P Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDRVEGIERYRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I+ MP+ H+P+QSGSD +L+ M RR+ + I +I+ V PD Sbjct: 240 NLLTDEIIEYVSRSRSFMPHFHIPLQSGSDEVLQLMRRRYGTELFASKIAKIKEVMPDAF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDENVK 387 I D IVG GET F + + + Q F YS R GT +++ +++ + Sbjct: 300 IGVDVIVGTRGETAGYFEKAYEFIHGLDVTQLHVFSYSERPGTQALKIDHVVTPEEKHQR 359 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 ++RLL L E+ +F +GQ + VL+EK Sbjct: 360 SQRLLALSD---EKTKAFYARHIGQTMPVLMEK 389 >gi|254463246|ref|ZP_05076662.1| MiaB-like tRNA modifying enzyme [Rhodobacterales bacterium HTCC2083] gi|206679835|gb|EDZ44322.1| MiaB-like tRNA modifying enzyme [Rhodobacteraceae bacterium HTCC2083] Length = 417 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 107/353 (30%), Positives = 172/353 (48%), Gaps = 27/353 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ M+++ S G + + +++NTC + +A K + ++R Sbjct: 8 TLGCRLNAYETEAMKELSQSAGLQ--------NAVIVNTCAVTAEAVRKARQEIRKLR-- 57 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--LERARFGKR 148 +E + ++V GC AQ E E V+ V+G R L G+ Sbjct: 58 -----RENPEARLIVTGCAAQTEPETFTAMGE-VDAVIGNTEKMRADTWQGLAADFIGET 111 Query: 149 ---VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 VD SV + L +DG R R A++ +Q GCD CTFC++PY RG S Sbjct: 112 EAVQVDDIMSVTETAGHL--IDGFGTRSR---AYVQVQNGCDHRCTFCIIPYGRGNSRSV 166 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 VV++ ++L+ G E+ L G ++ +W G L E ++ L + L RLR Sbjct: 167 PAGVVVEQIKRLVGKGYNEVVLTGVDLTSW-GADLPVEPKLGDLVMRILKLVPDLPRLRI 225 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ ++ D L++A LMP+LHL +Q+G D ILK M RRH + + + + Sbjct: 226 SSIDSIEVDDNLMQAIATEPRLMPHLHLSLQAGDDMILKRMKRRHLRDDAIAFCEEAKRL 285 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 RPD+ +D I GFP ETD F ++ L+++ F YSPR GTP + M Sbjct: 286 RPDMTYGADIIAGFPTETDTMFENSLKLIEECDLTWLHVFPYSPRNGTPAAKM 338 >gi|253566270|ref|ZP_04843724.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251945374|gb|EES85812.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|301164592|emb|CBW24151.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 439 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 114/393 (29%), Positives = 194/393 (49%), Gaps = 22/393 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + ADL ++NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADLCIVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K+ VVV GC AQ + ++ + V+VV+G + L + L K Sbjct: 73 ----VKQHPGAFVVVTGCYAQLKPGDVAKIEG-VDVVLGAEQKKDLLQYL--GDLHKHEG 125 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y+ K + +R FL +Q+GCD FC++C +P+ RG + +++ + Sbjct: 126 GEAYTTATK--DIRSFAPSCSRGDRTRFFLKVQDGCDYFCSYCTIPFARGRSRNGTIASL 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++AR+ G EI L G N+ + GK GE TF DL+ +L ++G+ R R ++ P Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDRVEGIERYRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I+ MP+ H+P+QSGSD +L+ M RR+ + I +I+ V PD Sbjct: 240 NLLTDEIIEYVSRSRSFMPHFHIPLQSGSDEVLQLMRRRYGTELFASKIAKIKEVMPDAF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDENVK 387 I D IVG GET F + + + Q F YS R GT +++ +++ + Sbjct: 300 IGVDVIVGTRGETAGYFEKAYEFIHGLDVTQLHVFSYSERPGTQALKIDHVVTPEEKHQR 359 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 ++RLL L E+ +F +GQ + VL+EK Sbjct: 360 SQRLLALSD---EKTKAFYARHIGQTMPVLMEK 389 >gi|290953319|ref|ZP_06557940.1| MiaB family tRNA modification protein [Francisella tularensis subsp. holarctica URFT1] Length = 413 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 109/357 (30%), Positives = 171/357 (47%), Gaps = 38/357 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC N+ DS R+ ++GY+ V+S D+AD++++NTC A ++ Sbjct: 4 IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G I E G +LV GC+ + + I + P V + GPQ Y L +E Sbjct: 63 VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + D+ + + + Y ++L I EGC+ CTFC++P RG Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 SRS+ ++ EA KL + GV E+ ++ Q+ +A W K + DL Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEY---QSNIIDLA 219 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L ++ RL Y +P + A G + +PYL + +Q S +LK M R Sbjct: 220 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVSLQHSSPEVLKRMKRPAH 276 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + I++ R + PDI ISS FIVGFPGET+ DF+ +D +K + FKYS Sbjct: 277 TQKTLDRINKWRDICPDITISSTFIVGFPGETEADFKHLLDFAEKAQLDRVGCFKYS 333 >gi|295313452|ref|ZP_06804054.1| ribosomal protein S12 methylthiotransferase [Francisella tularensis subsp. holarctica URFT1] Length = 419 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 109/357 (30%), Positives = 171/357 (47%), Gaps = 38/357 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC N+ DS R+ ++GY+ V+S D+AD++++NTC A ++ Sbjct: 10 IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 68 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G I E G +LV GC+ + + I + P V + GPQ Y L +E Sbjct: 69 VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDYENL---IEA 115 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + D+ + + + Y ++L I EGC+ CTFC++P RG Sbjct: 116 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 168 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 SRS+ ++ EA KL + GV E+ ++ Q+ +A W K + DL Sbjct: 169 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEY---QSNIIDLA 225 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L ++ RL Y +P + A G + +PYL + +Q S +LK M R Sbjct: 226 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVSLQHSSPEVLKRMKRPAH 282 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + I++ R + PDI ISS FIVGFPGET+ DF+ +D +K + FKYS Sbjct: 283 TQKTLDRINKWRDICPDITISSTFIVGFPGETEADFKHLLDFAEKAQLDRVGCFKYS 339 >gi|115314257|ref|YP_762980.1| 2-methylthioadenine synthetase [Francisella tularensis subsp. holarctica OSU18] gi|156501726|ref|YP_001427791.1| ribosomal protein S12 methylthiotransferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009215|ref|ZP_02274146.1| hypothetical protein Ftulh_00385 [Francisella tularensis subsp. holarctica FSC200] gi|254367133|ref|ZP_04983166.1| 2-methylthioadenine synthetase [Francisella tularensis subsp. holarctica 257] gi|122325707|sp|Q0BNJ1|RIMO_FRATO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065371|sp|A7NA32|RIMO_FRATF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|115129156|gb|ABI82343.1| probable 2-methylthioadenine synthetase [Francisella tularensis subsp. holarctica OSU18] gi|134252956|gb|EBA52050.1| 2-methylthioadenine synthetase [Francisella tularensis subsp. holarctica 257] gi|156252329|gb|ABU60835.1| tRNA modifying enzyme, MiaB family [Francisella tularensis subsp. holarctica FTNF002-00] Length = 431 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 109/357 (30%), Positives = 171/357 (47%), Gaps = 38/357 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC N+ DS R+ ++GY+ V+S D+AD++++NTC A ++ Sbjct: 4 IPKIGFV-SLGCPKNLVDSERIITKLKAEGYDLVDSYDNADMVIVNTCGFLNSAIDESLE 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G I E G +LV GC+ + + I + P V + GPQ Y L+E Sbjct: 63 VIGE-------AIAENGKVLV--TGCLGN-KADLIKEKHPEVLSITGPQDY---ENLIEA 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + D+ + + + Y ++L I EGC+ CTFC++P RG Sbjct: 110 VHTHAPIFANDFVSLVPPQGIKLTPRHY-------SYLKISEGCNNTCTFCIIPDIRGKL 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 SRS+ ++ EA KL + GV E+ ++ Q+ +A W K + DL Sbjct: 163 KSRSIDNIMKEAEKLKNAGVKELLVISQDTSAYGVDIKYKSGIWNNKEY---QSNIIDLA 219 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L ++ RL Y +P + A G + +PYL + +Q S +LK M R Sbjct: 220 TALGDLDMWTRLHYVYPYPHVDKIVPLMAQGKI---LPYLDVSLQHSSPEVLKRMKRPAH 276 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + I++ R + PDI ISS FIVGFPGET+ DF+ +D +K + FKYS Sbjct: 277 TQKTLDRINKWRDICPDITISSTFIVGFPGETEADFKHLLDFAEKAQLDRVGCFKYS 333 >gi|163787983|ref|ZP_02182429.1| 2-methylthioadenine synthetase [Flavobacteriales bacterium ALC-1] gi|159876303|gb|EDP70361.1| 2-methylthioadenine synthetase [Flavobacteriales bacterium ALC-1] Length = 406 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 125/422 (29%), Positives = 209/422 (49%), Gaps = 44/422 (10%) Query: 61 DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILR 119 + +++V+NTC A E+ + + L + KE GD+ V V GC+++ ++ + Sbjct: 16 EGNVVVINTCGFINNAKEESVNTI-----LHYMQKKEEGDVDKVFVTGCLSERYKPDLEK 70 Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179 P V+ G LP LL + + DY E ERL+ Y A+ Sbjct: 71 EIPNVDQYFGTT---ELPGLL-------KALGADYKHELIGERLTTTPKNY-------AY 113 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L I EGCD+ C+FC +P RG S + ++V EA KL NGV E+ L+ Q++ + G Sbjct: 114 LKIAEGCDRPCSFCAIPLMRGKHKSTPIEEIVIEAEKLAANGVKELILIAQDLTYY---G 170 Query: 240 LD-GEKCTFSDLLYSLSEIKGL--VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 LD +K ++LL +L +++G+ +RL Y T P D+ D + + + YL +P Sbjct: 171 LDLYKKRNLAELLENLVKVEGIDWIRLHYAFPTGFPMDVLDVMNREPK----ICNYLDIP 226 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 +Q SD ILKSM R T + ++++ R+ P++ I + IVG+PGET +DF D V Sbjct: 227 LQHISDSILKSMRRGTTKEKTTKLLNEFRAKVPEMTIRTTLIVGYPGETQEDFETLRDWV 286 Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414 ++ + + F YS T N+ + V E VK +R + + + N A +GQ Sbjct: 287 KEMRFERLGCFTYSHEENTHAYNLEDDVPEEVKMQRANEIMEIQSQISWELNQAKIGQEF 346 Query: 415 EVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN-------IGDIIKVRITDVKISTLYGEL 467 +V+I++ KE VGR+ + V N + G+ +++ + + LYGE+ Sbjct: 347 KVVIDR--KEGNYFVGRTEYDSPDVDNEVRIDATETYLKTGEFATIKVIEAEDFDLYGEV 404 Query: 468 VV 469 V+ Sbjct: 405 VL 406 >gi|126440905|ref|YP_001059197.1| putative tRNA modifying protein [Burkholderia pseudomallei 668] gi|238065309|sp|A3NA26|RIMO_BURP6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|126220398|gb|ABN83904.1| MiaB-like protein [Burkholderia pseudomallei 668] Length = 463 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 126/465 (27%), Positives = 209/465 (44%), Gaps = 50/465 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ +G Sbjct: 21 SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77 Query: 91 KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146 + E G V+V GC+ A G ++ P V V GP + + + + Sbjct: 78 ----LAENGK--VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPHAVGEVMQAV-HSHLP 130 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K D F L + G A+L I EGC+ C+FC++P RG +SR Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGELVSRP 181 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 +++V+ EA L +GV E+ ++ Q+ +A W G+ L K ++L+ +L Sbjct: 182 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 238 Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRH 310 E+ VRL Y +P + A G L ++PYL +P Q +LK M R Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHAHPEVLKRMKRPA 298 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 A + + + R + PD+ I S FI GFPGETD F +D + + F YSP Sbjct: 299 NAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIRDAELDRVGCFAYSPV 358 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 G + + + ++V+ R + E + +G+ ++VLI++ E G+ Sbjct: 359 EGASANALDGALPDDVREARRARFMEVAEEVSAARIARKIGKTLKVLIDEVNAEGGIGRT 418 Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 +P + VV SK + +G+ + V+IT L+GE+ Sbjct: 419 AADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADSHDLWGEV 463 >gi|298712341|emb|CBJ33133.1| n/a [Ectocarpus siliculosus] Length = 442 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 100/292 (34%), Positives = 156/292 (53%), Gaps = 44/292 (15%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY----- 81 FF+++YGCQMNV D+ + + G+ +++++A +++ NTC IRE+A KV+ Sbjct: 150 FFIETYGCQMNVSDTEVVRAILLKAGFSEADTLEEAGVVLANTCAIRERAEGKVWDRLKF 209 Query: 82 -SFLGRIRNLKNSRIKE------GG--DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 S + R R L + + GG DL + V GC+A+ E +L R V++V GP Sbjct: 210 FSSIRRRRKLAATHAAKARQPVPGGLSDLKIGVLGCMAERLKESLLERG-GVDLVTGPDA 268 Query: 133 YYRLPELLE---RARFGKR--VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCD 187 Y LP LLE + G+ V+ S ++ + ++ V N V+AF++I GC+ Sbjct: 269 YRDLPRLLELVGTSGSGESTGAVNVQLSQDETYADIAPVRLVNNTSEAVSAFISIMRGCN 328 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--------- 238 CT+C+VP+TRG E SR L +VDEA +L D+GV E+TLLGQNVN++ + Sbjct: 329 NMCTYCIVPFTRGRERSRPLGSIVDEAMRLRDDGVREVTLLGQNVNSYHDRSEASTALYN 388 Query: 239 GLD---------------GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275 G D G F++LL ++ VR+R+T+ HP+D D Sbjct: 389 GTDYTTTAGFGNTFRSRGGAGAYFAELLAEVASAVPEVRVRFTSPHPKDFPD 440 >gi|74003946|ref|XP_849433.1| PREDICTED: similar to CDK5 regulatory subunit associated protein 1-like 1 isoform 3 [Canis familiaris] Length = 578 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 119/455 (26%), Positives = 215/455 (47%), Gaps = 37/455 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GYE + +ADL +LN+C ++ A + F Sbjct: 63 QKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASEADLWLLNSCTVKNPAEDH---FR 119 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K +V+AGCV QA+ + + ++G Q R+ E++E Sbjct: 120 NSIKKAQEENKK------IVLAGCVPQAQPRQDYFKG---LSIIGVQQIDRVVEVVEETI 170 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G V + K + +D RK + +++ GC CT+C + RG Sbjct: 171 KGHSVRLLGQKKANGKRLGGARLDLPKIRKNPLIEIISVNTGCLNACTYCKTKHARGNLA 230 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI------ 257 S + ++V+ A++ GVCEI L ++ A+ G+ + LL+ L E+ Sbjct: 231 SYPIDELVERAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPALLWKLVEVIPEGAM 286 Query: 258 --KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 G+ Y H +M+ L + + +LH+PVQS SD +L M R + ++ Sbjct: 287 LRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDTVLMEMKREYCVADF 341 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 ++++D ++ P I +++D I GFPGETD DF+ T+ LV+ + F ++ PR GTP Sbjct: 342 KRVVDFLKEKVPGITLATDIICGFPGETDQDFQETVKLVEDYKFPSLFINQFYPRPGTPA 401 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSP 433 + M+ QV VK +R L + S+N D +G+ +VL+ + + V + Sbjct: 402 AKMV-QVPAQVKKQRTKDLSRVFH----SYNPYDHKIGERQQVLVTEESFDSKFYVAHNR 456 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + V++ +G +I+V I + + G+ V Sbjct: 457 FYEQVLVPKNPTFMGKMIEVDIYESGKHFMKGQPV 491 >gi|300192927|ref|NP_001177888.1| CDKAL1-like protein [Nasonia vitripennis] Length = 541 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 122/463 (26%), Positives = 214/463 (46%), Gaps = 49/463 (10%) Query: 22 IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 ++P Q ++K++GC N DS M GY ADL +LN+C ++ A + Sbjct: 56 VIPGTQTIYIKTWGCTHNSSDSEYMAGQLSMYGYNLTEDKSIADLWILNSCTVKNPAEDH 115 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYY 134 + + R L +VV+GCV Q +P N + +G Q Sbjct: 116 FKNEINLARKLGKH---------IVVSGCVPQG--------APKSNFIQGLSIIGVQQID 158 Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG-----YNRKRGVTAFLTIQEGCDKF 189 R+ E++E G +T + K E + G R+ + + I GC Sbjct: 159 RVVEVVEETLKG----NTVKFLNKKKEAGKKIGGAPLSLPKVRRNPLIEIIAINTGCLNQ 214 Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249 CT+C + RG S +++D A + +G+ E+ L ++ A+ GK +D + Sbjct: 215 CTYCKTKHARGELGSYRPEEIIDRAIQAFKDGIKELWLTSEDTGAY-GKDID---TNLPE 270 Query: 250 LLYSLSE-IKGLVRLRYTTSHPRDMSDCL-----IKAHGDLDVLMPYLHLPVQSGSDRIL 303 LL+ L + I R+R ++P + + L I H + +LH+PVQSGSDR+L Sbjct: 271 LLWKLIDVIPDKCRMRIGMTNPPYILEHLEEIGKILKHPKV---YSFLHIPVQSGSDRVL 327 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 M R ++ ++ I+D ++ P+I I++D I GFP ET +DF TM L K ++ F Sbjct: 328 FDMKREYSRSDFENIVDFLKEKIPNINIATDVICGFPTETSEDFEETMSLCQKYKFSTLF 387 Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 ++ PR GTP + M++ + +K L + + +N +G+I EVL+ + Sbjct: 388 INQFFPRQGTPAAKMIQVPSKEIKNRTKLI--SEFFQSYEPYNTK-IGEIQEVLVTEIAH 444 Query: 424 EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 + V + + + V++ K +G+++KV+I ++ GE Sbjct: 445 DNKHYVAHNSYYEQVLIPMKKEYMGEMLKVKIISASKHSMKGE 487 >gi|251772238|gb|EES52808.1| RNA modification enzyme, MiaB family [Leptospirillum ferrodiazotrophum] Length = 456 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 119/439 (27%), Positives = 207/439 (47%), Gaps = 22/439 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + S GC N D+ RM S+GY+ V +++A+++++NTC A + L Sbjct: 15 IVSLGCPKNSSDTERMISDLSSRGYKVVPDLEEAEILLVNTCSFVTDARRESVDTL---- 70 Query: 89 NLKNSRIKEGGDLLVVV-AGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ SR KE G +V AGC+ +++ P V++ + +RL E+L++ Sbjct: 71 -LELSRYKEEGKARYLVGAGCLVSRYRDQMGELIPEVDLALTTFEEHRLGEILDQVGGS- 128 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + S+ L G A++ + EGCD CTFC +P RG ++SR+ Sbjct: 129 --TSSPLSIRPALFPLP----GARLTPPHRAYVKVSEGCDHPCTFCSIPLARGGQVSRAP 182 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++ E R L G E+TL+ Q++ + G+ L G SDLL + G+ +R Sbjct: 183 ESILAEVRDLASRGTREVTLIAQDLTRY-GQDL-GLSDGLSDLLERIDAEGGIPWVRLLY 240 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++D L+ ++PYL +P+Q +L +M R ++++DR+RS P Sbjct: 241 AYPTLVTDRLLSVMAKSRTVLPYLDIPLQHVEASVLTAMKRPGNVEFMKRLVDRVRSAIP 300 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + + + FI GFPGET+ +F + MD V + F +S GTP ++ +QV ++ Sbjct: 301 GVTLRTTFITGFPGETEREFESLMDFVAWARFDHVGVFAFSREEGTPSYSLPDQVPHRIR 360 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSP--WLQSVVL 440 R L + N A G + +LIE ++ G+ G +P V++ Sbjct: 361 MRRRKDLMALCAGISLEKNKALEGTVQPILIEGLSEQSDLVLSGRTRGMAPDGIDGEVLV 420 Query: 441 NSKNHNIGDIIKVRITDVK 459 S + G+I+ RI + Sbjct: 421 LSGQGSPGEIVDCRIVKAR 439 >gi|224026389|ref|ZP_03644755.1| hypothetical protein BACCOPRO_03145 [Bacteroides coprophilus DSM 18228] gi|224019625|gb|EEF77623.1| hypothetical protein BACCOPRO_03145 [Bacteroides coprophilus DSM 18228] Length = 438 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 130/448 (29%), Positives = 215/448 (47%), Gaps = 35/448 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + M G V + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSSIGKMLKDVGVRTVRKGEKADICVINTCSVTEIADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELL---ERARF 145 K+ VVV GC AQ + E++ S I V++V+G + L L E+ Sbjct: 73 ----TKQHPGAFVVVTGCYAQLKPEQV---SNIEGVDLVLGAEQKGELINYLGSLEKHEH 125 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G+ + + S D R R FL +Q+GCD FC++C +P+ RG + Sbjct: 126 GEAITTATKDIRSFAPSCSRGD----RTR---YFLKVQDGCDYFCSYCTIPFARGRSRNG 178 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +V +AR+ G EI L G N+ + GK GE TF DL+ +L +++G+ R R Sbjct: 179 KIEDLVAQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--TFFDLVKALDQVEGIERFRI 234 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ P ++D +I+ MP+ H+P+QSG D +LK M RR+ + I +I+ + Sbjct: 235 SSIEPNLLTDEIIEYVAHSRAFMPHFHIPLQSGCDEVLKLMRRRYDIALFASKIRKIKEL 294 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQV 382 PD I D IVG GET + F + + + Q F YS R GT + + Sbjct: 295 MPDAFIGVDVIVGTRGETPEYFEKAYEFIRGLDVTQLHVFSYSERPGTQALKIDYVVPAE 354 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 +++ +++RLL L E+ +F +GQ +VL+EK K + G + V L Sbjct: 355 EKHQRSQRLLALSD---EKTKAFYARHIGQEAKVLMEK-SKAGMPMHGFTENYIRVELEH 410 Query: 443 KNHNIGDIIKVRITDVK--ISTLYGELV 468 + +++VR+ + + L GELV Sbjct: 411 DDSLDNHLVQVRMGEFNEDSTALKGELV 438 >gi|182415379|ref|YP_001820445.1| MiaB-like tRNA modifying enzyme YliG [Opitutus terrae PB90-1] gi|238066424|sp|B1ZW93|RIMO_OPITP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|177842593|gb|ACB76845.1| MiaB-like tRNA modifying enzyme YliG [Opitutus terrae PB90-1] Length = 471 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 120/445 (26%), Positives = 207/445 (46%), Gaps = 26/445 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M G + + AD++++NTC + + E+ + + Sbjct: 8 SLGCAKNLVDSEIMVGHLHQAGMAVIPEAEKADVVIVNTCSFIDSSKEESIGHILEVHQH 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFGKRV 149 + R K + ++VAGC++Q +++ V+ +G ++ +++ + + Sbjct: 68 RGLR-KRRKEQKLIVAGCMSQRFSKDLSSSLHDEVDAFIGLDQVTKVAPIIQEI-YARER 125 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 TD V R + + + +T A++ I EGC+ CTFC++P RG SR Sbjct: 126 TKTDDPVSFVEGRSTFIPDYDTPRFRLTPKHFAYVKIAEGCNHPCTFCIIPQIRGRHRSR 185 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQN-----VNAW------RGKGLDGEKCTFSDLLYSL 254 ++ VV E R+L+ GV EI L+ Q+ ++ W R G + LL L Sbjct: 186 TVESVVAEVRQLVREGVKEINLISQDTTFFGMDTWEQRPNPRTPVDSGRGTALTTLLRQL 245 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 + I+G +R +HP SD LI+ + + Y+ +P+Q SD +L M R + Sbjct: 246 NAIEGDFWIRLLYTHPAHWSDELIRTIAECPKVARYIDIPLQHISDAMLSRMQRETSGGY 305 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 R +I RIR+ P IA+ + FIVGFPGETD D + + + + F+YS GT Sbjct: 306 IRDLIARIRAGIPGIAVRTTFIVGFPGETDADVDELCAFISETKFERLGVFRYSQEDGTR 365 Query: 375 GSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 + M EQ+ K R + LQK++ + VG+ + VL+E+ G +G+ Sbjct: 366 AAKMPEQLSAKTKEARWHRTMALQKQI---AADVSKTYVGRTLRVLVEEPGVARGE--AD 420 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRIT 456 +P + V + +G+ V +T Sbjct: 421 APDIDGRVYVPRELPVGEFADVTVT 445 >gi|53723567|ref|YP_102978.1| ribosomal protein S12 methylthiotransferase [Burkholderia mallei ATCC 23344] gi|121600276|ref|YP_993126.1| putative tRNA modifying protein [Burkholderia mallei SAVP1] gi|124384882|ref|YP_001026098.1| putative tRNA modifying protein [Burkholderia mallei NCTC 10229] gi|126448468|ref|YP_001080632.1| putative tRNA modifying protein [Burkholderia mallei NCTC 10247] gi|238562635|ref|ZP_00440103.2| conserved hypothetical protein [Burkholderia mallei GB8 horse 4] gi|254178505|ref|ZP_04885160.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia mallei ATCC 10399] gi|254199923|ref|ZP_04906289.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia mallei FMH] gi|254206256|ref|ZP_04912608.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia mallei JHU] gi|254358329|ref|ZP_04974602.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia mallei 2002721280] gi|81604977|sp|Q62JZ1|RIMO_BURMA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065305|sp|A3MK46|RIMO_BURM7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065306|sp|A2S2C9|RIMO_BURM9 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065307|sp|A1V4H3|RIMO_BURMS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|52426990|gb|AAU47583.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia mallei ATCC 23344] gi|121229086|gb|ABM51604.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia mallei SAVP1] gi|124292902|gb|ABN02171.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia mallei NCTC 10229] gi|126241338|gb|ABO04431.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia mallei NCTC 10247] gi|147749519|gb|EDK56593.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia mallei FMH] gi|147753699|gb|EDK60764.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia mallei JHU] gi|148027456|gb|EDK85477.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia mallei 2002721280] gi|160699544|gb|EDP89514.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Burkholderia mallei ATCC 10399] gi|238522236|gb|EEP85682.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4] Length = 463 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 126/465 (27%), Positives = 210/465 (45%), Gaps = 50/465 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ ++GYE + D ADL+V+NTC ++A ++ +G Sbjct: 21 SLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 77 Query: 91 KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146 + E G V+V GC+ A G ++ P V V GP + + + + Sbjct: 78 ----LAENGK--VIVTGCLGAKKSASGSGLIAEVHPKVLAVTGPHAVGEVMQAV-HSHLP 130 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K D F L + G A+L I EGC+ C+FC++P RG +SR Sbjct: 131 KP--------HDPFVDL-VPAAGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGELVSRP 181 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 +++V+ EA L +GV E+ ++ Q+ +A W G+ L K ++L+ +L Sbjct: 182 VAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVGALG 238 Query: 256 EIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRH 310 E+ VRL Y +P + A G L ++PYL +P Q +LK M R Sbjct: 239 ELAAQYGAWVRLHYVYPYPHVDEIIPMMAQGPLKGHVLPYLDVPFQHAHPEVLKRMKRLA 298 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 A + + + R + PD+ I S FI GFPGETD F +D + + + F YSP Sbjct: 299 NAERVLERVQKWREICPDLTIRSTFIAGFPGETDAQFETLLDFIREAELDRVGCFAYSPV 358 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKL 428 G + + + ++V+ R + E + +G+ ++VLI++ E G+ Sbjct: 359 EGASANALDGALPDDVREARRARFMEVAEEVSAARIARKIGKTLKVLIDEVNAEGGIGRT 418 Query: 429 VGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 +P + VV SK + +G+ + V+IT L+GE+ Sbjct: 419 AADAPEIDGVVYVEPAAKASKRYKVGEFVSVKITGADGHDLWGEV 463 >gi|285808603|gb|ADC36122.1| putative 2-methylthioadenine synthetase [uncultured bacterium 253] Length = 432 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 122/442 (27%), Positives = 198/442 (44%), Gaps = 42/442 (9%) Query: 50 SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109 + GYE +AD +V+NTC A ++ + LK + G +VVAGC+ Sbjct: 7 ANGYELTADASEADTVVVNTCGFIASAKQESIEAILEAAQLKTN----GKAQRLVVAGCL 62 Query: 110 AQAEGEEILRRSPIVNVVVG------------PQTYYR-LPELLERARFGKRVVDTDYSV 156 + +E+ P V+ +G PQT R LP + G + Y Sbjct: 63 VERYRDELKASLPEVDAFIGTSQINDILAVCNPQTNTRSLPIIA----LGNQ--SATYLY 116 Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216 ++ R+ Y AF+ I EGCD+ C FC +P RG SR +V EA + Sbjct: 117 DESTPRVLATPAHY-------AFIKIAEGCDRPCAFCFIPQMRGHFRSRRFGSIVAEAHQ 169 Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276 L GV E+ L+ Q+ + + G+ L G++ + LL LS G+ +R +P +SD Sbjct: 170 LAXEGVKELILVAQDSSRY-GEDL-GKQDALAHLLRELSHTDGIEWVRVMYXYPTHISDA 227 Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336 + + + YL +P+Q S +LK M R ++I R+R P IA+ + FI Sbjct: 228 FLDVLAEEAKAVKYLDMPLQHASQNVLKLMKRGGNRASLEKLIRRVRERVPGIAVRTTFI 287 Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396 GFPGETD+DF + + + + + F YS GTP + +V+ + +R L K Sbjct: 288 TGFPGETDEDFEELLTFIKNVEFDRVGVFTYSDEEGTPAFELANKVEPRIAKQRRARLMK 347 Query: 397 KLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVVL-----NSKNHN 446 N A VG+++ V+ E E +G++ ++P + VL + Sbjct: 348 AQSRISRKRNKAKVGEVLRVIFEGDSNESDLLWQGRIETQAPDIDGCVLINDAPEGFTPS 407 Query: 447 IGDIIKVRITDVKISTLYGELV 468 G ++ V IT+ + L G +V Sbjct: 408 PGAMVNVLITEAQEYDLVGRIV 429 >gi|226357149|ref|YP_002786889.1| ribosomal protein S12 methylthiotransferase [Deinococcus deserti VCD115] gi|226319139|gb|ACO47135.1| putative 2-methylthioadenine synthetase [Deinococcus deserti VCD115] Length = 503 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 133/479 (27%), Positives = 220/479 (45%), Gaps = 57/479 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ +GYE S +DA +++NTC A E+ + +G + Sbjct: 23 SLGCPKALVDSERILTQLRFEGYEVAPSYEDAHAVIVNTCGFITPAVEESLTAIGEALDA 82 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT----YYRLPELLE---RA 143 + V+V GC+ + E+IL R P V + G + + ELL A Sbjct: 83 TSK---------VIVTGCLGE-RPEKILERHPKVAAITGSEAVDDVMMHVRELLPIETDA 132 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT------------AFLTIQEGCDKFCT 191 G V D + +S+ D N + G A++ I EGC+ C Sbjct: 133 FTGLLPVAAPGMRADAEQPVSLTDP--NARHGDVLAPSVKLTPRHYAYVKIAEGCNHTCA 190 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE-- 243 FC++P RG ++SR V+ E+ +LI G E+ ++ Q+ +A +R GE Sbjct: 191 FCIIPKLRGRQVSRDAGSVLYESFRLIAGGTKELMIISQDTSAYGVDIRYRESEFQGEQI 250 Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 + +DL L E+ VR+ Y +P + L++ G +L PYL +P+Q S RIL Sbjct: 251 RAHLTDLAVKLGEMGAWVRMHYVYPYPH--VEKLVELMGQGKIL-PYLDVPLQHASPRIL 307 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 K M RR A I R R + P++ I S FIVGFPGET+++F+ + +++ + Sbjct: 308 KLM-RRPGAGRQLDTIRRWRELCPELVIRSTFIVGFPGETEEEFQELLTFLEEARLDRVG 366 Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 +F YS + V E +K ERL + + +G++++V+I++ Sbjct: 367 AFAYSDVEEADARALPGHVPEEIKQERLARFMEVAQRISTEKLAEKIGRVMDVIIDEFND 426 Query: 424 EKG-----KLVGRS----PWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++G +L+GR+ P + V + IGDI++ RI D L+GE++ Sbjct: 427 DEGDLPGTRLIGRTKGDAPGIDGQVYLYAGDFAGQVKIGDIVRARIEDSDEYDLFGEVL 485 >gi|34496828|ref|NP_901043.1| oxidoreductase [Chromobacterium violaceum ATCC 12472] gi|81656320|sp|Q7NYA1|RIMO_CHRVO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|34102683|gb|AAQ59048.1| probable oxidoreductase [Chromobacterium violaceum ATCC 12472] Length = 438 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 140/465 (30%), Positives = 211/465 (45%), Gaps = 53/465 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC DS ++ ++GYE S D ADL+V+NTC + A E+ Sbjct: 4 TPRVGFV-SLGCPKAASDSEQILTRLRAEGYEIAPSYDGADLVVVNTCGFIDSAVEESLD 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N E G V+V GC+ A+G+ + P V V GP + Sbjct: 63 AIGEALN-------ENGK--VIVTGCLG-AKGDVVRDVHPSVLAVTGPHATEEV------ 106 Query: 143 ARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 V T D F L + D G A+L I EGC+ CTFC++P RG Sbjct: 107 ----MSAVHTHLPKPHDPFVDL-VPDIGVRLTPKHYAYLKISEGCNHRCTFCIIPSMRGD 161 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDL 250 SR + V+ EA L GV EI ++ Q+ +A+ G+D + K ++L Sbjct: 162 LESRPIHDVLREAESLAKAGVKEILVISQDTSAY---GVDTKYKLGFHNGRPVKTRMTEL 218 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L VRL Y +P D +I D +L PYL +P Q S ++LK M R Sbjct: 219 CEELGRHGIWVRLHYVYPYPH--VDEVIPLMRDGKIL-PYLDIPFQHASQKVLKLMKRPA 275 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + I + R + P++ I S FIVGFPGET++DF + + + + F YSP Sbjct: 276 NSDNVLARIKKWREICPELVIRSTFIVGFPGETEEDFEELLAFIREAELDRVGCFTYSPV 335 Query: 371 LGTPGSNMLEQVDENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 G + + V E+VK ER + +Q ++ +++ VGQ ++VL+++ E G Sbjct: 336 EGATANELPNPVPEDVKEARKERFMAVQAEISARRLERR---VGQTLQVLVDEIDDE-GT 391 Query: 428 LVGRS----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGE 466 V RS P + +V ++ G+ +V I D L+GE Sbjct: 392 AVCRSYADAPEIDGLVFVEDAAGMQPGEFYQVEIVDCSEHDLWGE 436 >gi|91094359|ref|XP_970283.1| PREDICTED: similar to GA19679-PA [Tribolium castaneum] Length = 548 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 118/451 (26%), Positives = 220/451 (48%), Gaps = 33/451 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ ++K++GC N D+ M + GY+ + +ADL +LN+C ++ A + Sbjct: 71 QKIYIKTWGCAHNSSDTEYMAGQLTAYGYKLTENKKEADLWLLNSCTVKNPAED------ 124 Query: 85 GRIRNLKNSRIKEGGDL--LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 RN +I+E +L +VVAGCV Q + + ++G Q R+ E++E Sbjct: 125 -HFRN----QIQEAKELGKYIVVAGCVPQGAPKASFIQG---LSIIGVQQIDRVVEVVEE 176 Query: 143 ARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G +++ T K S++ R+ + + I GC CT+C + RG Sbjct: 177 TLKGNTVKLLGTKKEQGKKIGGASLLLPKV-RRNPLIEIIAINTGCLNQCTYCKTKHARG 235 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKG 259 S ++V+ A++ + GV EI L ++ + G+ + + +LL+ L E I Sbjct: 236 ELGSYPPEEIVERAKQAFEEGVVEIWLTSEDTGTY-GRDIG---TSLPELLWKLVEVIPE 291 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 RLR ++P + + L + ++ + +LH+PVQSGSD++L M R + ++ Sbjct: 292 GCRLRLGMTNPPYILEHLSEVAKIMNHPRVYSFLHVPVQSGSDQVLSDMKREYFRKDFEH 351 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++D ++S P + I++D I GFP ET+ DF T+ L +K + F ++ PR GTP + Sbjct: 352 VVDFLQSQIPGMTIATDIICGFPTETEKDFEDTLSLCEKYKFPSLFINQFFPRPGTPAAL 411 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 + + A+ + K+L + S+ D VG++ EVL+ + +K VG + + Sbjct: 412 L-----PRIPAQEVKGRTKRLTDLFYSYQPYDKKVGEVQEVLVTEVSHDKKHYVGHNKFY 466 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 + V++ +G ++ V+I ++ GE Sbjct: 467 EQVLVPKDEKYMGKLVTVKIVSATKFSMTGE 497 >gi|167753010|ref|ZP_02425137.1| hypothetical protein ALIPUT_01274 [Alistipes putredinis DSM 17216] gi|167659324|gb|EDS03454.1| hypothetical protein ALIPUT_01274 [Alistipes putredinis DSM 17216] Length = 432 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 124/457 (27%), Positives = 217/457 (47%), Gaps = 43/457 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82 ++ V + GC N DS + + GY + D DA ++V+NTC A ++ Sbjct: 2 KKINVITLGCSKNTVDSEHLMAQLAAAGYTVTHDSDRTDAKVVVINTCGFIGDAKQESID 61 Query: 83 FLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L+ + K+ G + + V GC+++ EE+ P V+ G + + + LE Sbjct: 62 MI-----LRAAAAKQTGKIERLFVVGCLSERYAEELRAELPEVDEFFGVKDWDDIVRALE 116 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + + + A+L I EGC+ C +C +P RG Sbjct: 117 ATPRPALATERRLTTPKHY-----------------AYLKISEGCNWKCGYCAIPLIRGP 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S + +++EARKL GV E+ ++ Q+ + G L G++ ++LL +L I G+ Sbjct: 160 HASVPMETLLEEARKLAAGGVRELIVIAQDTTYY-GLDLYGKR-RLAELLEALCRIDGIR 217 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R ++P D +I+ + YL +P Q SD L +M+RRHT + ++ID+ Sbjct: 218 WIRLHYAYPTAFPDEVIEVMAREPKICKYLDIPFQHISDDQLAAMHRRHTKAQAYELIDK 277 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLE 380 +R PD+A+ + +VG+PGET+ DF ++ V + + + F YS GT N+ + Sbjct: 278 LRQAIPDLALRTTLLVGYPGETEADFEELLEFVRTVRFERLGVFPYSEEEGTYSARNLPD 337 Query: 381 QVDENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW--- 434 V E VK ER++ LQ ++ + N A +GQ+ V+I+ ++ VGRS + Sbjct: 338 DVPEEVKQSRVERVMALQNEI---SLENNRARIGQLERVIID--SRQGDFYVGRSQYDSP 392 Query: 435 --LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467 Q +++ + + G +VRIT + LYGEL Sbjct: 393 EVDQEILIPAAGRRLIRGCFYQVRITAAEDYDLYGEL 429 >gi|315452778|ref|YP_004073048.1| MiaB-like tRNA modifying protein [Helicobacter felis ATCC 49179] gi|315131830|emb|CBY82458.1| MiaB-like tRNA modifying enzyme,2-methylthioadenine synthetase [Helicobacter felis ATCC 49179] Length = 418 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 121/442 (27%), Positives = 217/442 (49%), Gaps = 38/442 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + Q+ + K++GC+ N+YD+ M + + +ERV S+++A ++VLN+C + A + Sbjct: 1 MKQKVYFKTFGCRTNLYDTQVM--LAHLKDFERVESLEEAQIVVLNSCTVTNDADYTARA 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + ++ L V GC A ++G ++ + V G ++ LL+ Sbjct: 59 YAKKVHALGKK---------VYFTGCGANSQGLKLFEQGHAFGVF-GHDRKEQINALLQT 108 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 Y+ + SIV + R AF+ IQEGCD C++CV+P RG Sbjct: 109 PE------KFFYADSLTYVERSIVPDFVGKTR---AFVKIQEGCDFKCSYCVIPLVRG-- 157 Query: 203 ISRSL--SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SRSL Q++D+ R L G+ EI L G NV ++ GK + + L+ ++ I+G+ Sbjct: 158 KSRSLIEDQILDQVRVLAQKGIVEIVLTGTNVGSY-GKET---RSNIARLIQKIARIEGI 213 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + ++ D +L +LH+ +Q D +LK M RR+ + R +++ Sbjct: 214 KRVRIGSLEPSQIDAEFLEL-LDHPILEKHLHIALQHSHDTMLKHMRRRNRTHSDRALLE 272 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +I S A+ +DFIVG P E+++ +++ ++ ++ F YSPR GT S M Sbjct: 273 KIAS--KGFALGTDFIVGHPYESEEIWQSALENFKQLPLTHIHPFIYSPRSGTLSSTMQN 330 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQ--IIEVLIEKHGKEKGKLV-GRSPWLQS 437 +V+ + ERL ++ +++ +F + ++EVLIE + KG L G + Sbjct: 331 RVNGKIAKERLQIIKTQVQTNNHAFRQQVKAEQHVLEVLIESY---KGGLYHGSDQYFNP 387 Query: 438 VVLNSKNHNIGDIIKVRITDVK 459 + + +K G I V DV+ Sbjct: 388 IEIRAKEDLRGQWIHVSDYDVR 409 >gi|270014918|gb|EFA11366.1| hypothetical protein TcasGA2_TC011523 [Tribolium castaneum] Length = 545 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 118/451 (26%), Positives = 220/451 (48%), Gaps = 33/451 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ ++K++GC N D+ M + GY+ + +ADL +LN+C ++ A + Sbjct: 68 QKIYIKTWGCAHNSSDTEYMAGQLTAYGYKLTENKKEADLWLLNSCTVKNPAED------ 121 Query: 85 GRIRNLKNSRIKEGGDL--LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 RN +I+E +L +VVAGCV Q + + ++G Q R+ E++E Sbjct: 122 -HFRN----QIQEAKELGKYIVVAGCVPQGAPKASFIQG---LSIIGVQQIDRVVEVVEE 173 Query: 143 ARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G +++ T K S++ R+ + + I GC CT+C + RG Sbjct: 174 TLKGNTVKLLGTKKEQGKKIGGASLLLPKV-RRNPLIEIIAINTGCLNQCTYCKTKHARG 232 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKG 259 S ++V+ A++ + GV EI L ++ + G+ + + +LL+ L E I Sbjct: 233 ELGSYPPEEIVERAKQAFEEGVVEIWLTSEDTGTY-GRDIG---TSLPELLWKLVEVIPE 288 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 RLR ++P + + L + ++ + +LH+PVQSGSD++L M R + ++ Sbjct: 289 GCRLRLGMTNPPYILEHLSEVAKIMNHPRVYSFLHVPVQSGSDQVLSDMKREYFRKDFEH 348 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++D ++S P + I++D I GFP ET+ DF T+ L +K + F ++ PR GTP + Sbjct: 349 VVDFLQSQIPGMTIATDIICGFPTETEKDFEDTLSLCEKYKFPSLFINQFFPRPGTPAAL 408 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 + + A+ + K+L + S+ D VG++ EVL+ + +K VG + + Sbjct: 409 L-----PRIPAQEVKGRTKRLTDLFYSYQPYDKKVGEVQEVLVTEVSHDKKHYVGHNKFY 463 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 + V++ +G ++ V+I ++ GE Sbjct: 464 EQVLVPKDEKYMGKLVTVKIVSATKFSMTGE 494 >gi|150400142|ref|YP_001323909.1| MiaB-like tRNA modifying protein [Methanococcus vannielii SB] gi|150012845|gb|ABR55297.1| MiaB-like tRNA modifying enzyme [Methanococcus vannielii SB] Length = 421 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 120/452 (26%), Positives = 226/452 (50%), Gaps = 38/452 (8%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKV 80 ++ + +++ YGC +N D+ +++ Q +E ++D+D+IV+NTC +R++ ++ Sbjct: 2 VIDLKIYIEGYGCTLNTADTEIIKNSIKEFQNFEITTDLNDSDIIVVNTCIVRQETEHRM 61 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 S + ++L VVVAGC+A+A ++I S + +V P+ +L Sbjct: 62 ISRIEYFKSLNKK---------VVVAGCMAKALPKKIEYFS---DCMVLPREAQNSGNIL 109 Query: 141 ERARF-GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + K + + ++ +K +LS +G+ + + I EGC C++C+V R Sbjct: 110 FKKFIENKEKTNFENNLSEKLNKLS--------SKGLISPMPISEGCLGNCSYCIVKKAR 161 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G S +V +A + I++G + + Q+ + G D S+L+ +SEI Sbjct: 162 GTLESYDRKLIVKKAMEFINSGTKCLLITAQDTACY---GYDNND-NLSNLIDDISEIPE 217 Query: 260 LVRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 +R H + + D L+++ V+ +LHLP+QSG +++LK M R +T E+ Sbjct: 218 KFAMRIGMMHAKFAEPILDELVESFKSEKVV-KFLHLPIQSGDNQVLKDMGRNYTVDEFI 276 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +++ + D+ ++D IVGFP ET+D F T++++ KI KYS R T + Sbjct: 277 SVLNEFKRKIKDLNFTTDVIVGFPSETEDAFNNTLEVLKKIKPDFTHGAKYSQRKYTKAA 336 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 +L+QVD ++ ER L + R+ N +GQ E+L+ K+ +G + + Sbjct: 337 -LLKQVDTKIRKERSEILNELRRDLSYGNNKRHIGQTFEILVTKNN------MGVTENSK 389 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V+ N IG+ KV+I+D L G+L+ Sbjct: 390 NVIFKD-NAKIGEFRKVKISDANTFGLLGKLL 420 >gi|152991220|ref|YP_001356942.1| tRNA modifying enzyme [Nitratiruptor sp. SB155-2] gi|238066418|sp|A6Q526|RIMO_NITSB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|151423081|dbj|BAF70585.1| tRNA modifying enzyme [Nitratiruptor sp. SB155-2] Length = 435 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 120/443 (27%), Positives = 226/443 (51%), Gaps = 32/443 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ V S GC N+ D+ M + YE ++ADLI++NTC A E+ L Sbjct: 3 KKLHVVSLGCTKNLVDTEVM--LARLPEYEITQIPEEADLIIVNTCGFIGPAKEES---L 57 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +L + R K D +V+AGC+++ EE+ + P V++ G Y ++ EL+ + + Sbjct: 58 QTVFDLHSRRKK---DSTLVMAGCLSERYKEELQKEMPEVDIFTGVGDYAKIDELISQKK 114 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 D Y + + ER+ I Y+ A++ + EGC++ C+FC +P +G S Sbjct: 115 --SSFSDQVYLIRSE-ERI-ITGSNYH------AYIKLSEGCNQQCSFCAIPSFKGKLQS 164 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 R + +V E + L+ G + T + Q+ +++ R G+ + + DL++++ EI+G++ Sbjct: 165 RPIEDIVQEIKNLVAKGYKDFTFVSQDSSSYLRDFGI---QESLVDLIHAVEEIEGIMSA 221 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R +P + +I A + V + Y +P+Q SD +LK M R A + ++++ +R Sbjct: 222 RILYLYPSTTTPKMIDAIANSPVFVNYFEMPIQHISDSLLKKMKRGIGAQKTKELLYAMR 281 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 +V P+ + + IVG PGE+++DF ++ ++ + + F YS GT M E++ Sbjct: 282 AV-PESFLRTSLIVGHPGESEEDFHELVEFLEDFEFDRINLFAYSDEEGTKAYEMEEKIP 340 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSP-WLQSV--- 438 + V ERL L +++QQ+ + +G+ +E ++ +E L+ GR W V Sbjct: 341 QEVIEERLAILDAIVKKQQMKSLEKDLGKTVECYLDGTSEESELLLSGRKKIWAPEVDGE 400 Query: 439 -VLNSK---NHNIGDIIKVRITD 457 ++N N IG++ KV I + Sbjct: 401 ILINDSEIDNLQIGNLYKVHINE 423 >gi|153808740|ref|ZP_01961408.1| hypothetical protein BACCAC_03039 [Bacteroides caccae ATCC 43185] gi|149128566|gb|EDM19784.1| hypothetical protein BACCAC_03039 [Bacteroides caccae ATCC 43185] Length = 439 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 120/430 (27%), Positives = 207/430 (48%), Gaps = 23/430 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K+ VVV GC AQ + ++ + V+VV+G + L L K Sbjct: 73 ----VKQHPGAFVVVTGCYAQLKPGDVAQIKG-VDVVLGAEQKSDLLRYL--GNLQKHEE 125 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 ++ K + +R FL +Q+GCD FC++C +P+ RG + +++ + Sbjct: 126 GEAFTTATK--DIRSFSPSCSRGDRTRFFLKVQDGCDYFCSYCTIPFARGRSRNGTIASM 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++A + G EI L G N+ + GK GE TF DL+ +L +++G+ R R ++ P Sbjct: 184 VEQAGQAAAEGGKEIVLTGVNIGDF-GK-TTGE--TFFDLVKALDQVEGIERYRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I+ MP+ H+P+QSGSD +LK M RR+ + + +I+ V PD Sbjct: 240 NLLTDEIIEFVSRSRSFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKVKKIKEVMPDAF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVK 387 I D IVG GET++ F + + Q F YS R GT + + +++ + Sbjct: 300 IGVDVIVGTRGETEEYFEEAYQFIAGLDVTQLHVFSYSERPGTQALKIDYVVSPEEKHQR 359 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447 ++RLL L E+ +F +GQ + VL+EK K + G + V + + N Sbjct: 360 SQRLLALSD---EKTQAFYARHIGQTMSVLMEK-SKAGTPMHGFTENYIRVEVEADNSLD 415 Query: 448 GDIIKVRITD 457 +I VR+ D Sbjct: 416 NQVINVRLGD 425 >gi|192288683|ref|YP_001989288.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris TIE-1] gi|192282432|gb|ACE98812.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris TIE-1] Length = 423 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 137/449 (30%), Positives = 206/449 (45%), Gaps = 62/449 (13%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N ++S + S G AD IV+N+C + +A + +IR Sbjct: 5 VVTFGCRLNAFESELIRREAESAGL--------ADAIVVNSCAVTNEAVAQARQ---QIR 53 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYYRLPELLER- 142 LK +R + ++V GC AQ E + + V+ ++ LE Sbjct: 54 KLKRAR----PEARIIVTGCAAQTEPATFAAMAEVDRVIGNDDKTRSDAWHAAKGALEAG 109 Query: 143 ARFG-----KRVVDTDYSVEDKFERLSIVDG---GYNRKRGVTAFLTIQEGCDKFCTFCV 194 A FG K V +V + L +DG G R F+ +Q GCD CTFC+ Sbjct: 110 ASFGLDTEQKIAVADIMAVREMAPHL--LDGYQSGLPR-----VFVQVQNGCDHRCTFCI 162 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 +PY RG S + VV++ R L + G EI L G ++ ++ G L G + + L Sbjct: 163 IPYGRGNSRSVPVGAVVEQVRLLAERGHAEIVLTGVDLTSY-GADLPGAPKLGTLVKKVL 221 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 + L RLR ++ + LI A LMP+LHL +Q+G D ILK M RRH + Sbjct: 222 RHVPELQRLRISSIDQVEADRDLIDALATEPRLMPHLHLSLQAGDDLILKRMKRRHARAD 281 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +R RPDIA+ +D I GFP ET++ F+ ++DLV++ G F YSPR GTP Sbjct: 282 AIAFCAEVRRRRPDIALGADLIAGFPTETEEMFQRSLDLVEECGLTFLHVFPYSPRPGTP 341 Query: 375 GSNMLEQVDENV--------KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 + M Q+D V +A LQ++L DA +G VLIE + Sbjct: 342 AARM-PQLDGRVIRDRAARLRAAGEAALQRRL--------DAEIGATRAVLIESPTQ--- 389 Query: 427 KLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455 GR+ V ++ GD+ +RI Sbjct: 390 ---GRTEHFLPVAISGATP--GDVQTLRI 413 >gi|323345505|ref|ZP_08085728.1| MiaB tRNA modifying enzyme-like protein [Prevotella oralis ATCC 33269] gi|323093619|gb|EFZ36197.1| MiaB tRNA modifying enzyme-like protein [Prevotella oralis ATCC 33269] Length = 432 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 128/454 (28%), Positives = 217/454 (47%), Gaps = 47/454 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK-VYSFLGRI 87 + GC N+ DS + F GY V+ + ++ V+NTC E A E+ + + L + Sbjct: 10 TMGCSKNLVDSELLMKQFEVNGYHCVHDSKNPQGEIAVVNTCGFIESAKEESINTILELV 69 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 R+K+ + V GC++Q EE+ + P V+ G Y +L L +A Sbjct: 70 AAKSEGRLKK-----LYVMGCLSQRYKEELEKEIPEVDKFYGKFNYKQLLSDLGKAEI-- 122 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIE 202 I GG KR +T A+L I EGCD+ C +C +P G Sbjct: 123 -----------------IACGG---KRHLTTPRHYAYLKIAEGCDRHCAYCAIPLITGKH 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR ++++ E +L+ NGV E ++ Q + + G +DG++ +DL+ ++++IKG+ Sbjct: 163 VSRPKAEILQEVEELVANGVKEFQIIAQELT-YYGVDIDGKR-HIADLISAIADIKGVKW 220 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R ++P L+ + + YL + +Q SD IL M+R + E +I I Sbjct: 221 IRLHYAYPNQFPMELLDVMKEKSNVCKYLDIALQHISDHILTRMHRHVSKQETIDLIKAI 280 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381 R+ PDI I + +VGFPGET++DF + V + + +F YS GT + N + Sbjct: 281 RTKVPDIYIRTTLLVGFPGETEEDFEELKEFVKWARFERMGAFAYSEEEGTYSALNYKDD 340 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437 V E+VK +RL L + ++ D +G ++V+I++ KE V R SP + Sbjct: 341 VPEDVKQQRLDELMQIQQDISTEIEDEKIGCKMKVIIDR--KEGNYYVARTEFSSPEVDP 398 Query: 438 VVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468 VL K ++G V+IT + +Y E++ Sbjct: 399 EVLIPAKGKMLHVGSFYNVQITGAEEFDMYAEVI 432 >gi|307595884|ref|YP_003902201.1| MiaB family RNA modification enzyme [Vulcanisaeta distributa DSM 14429] gi|307551085|gb|ADN51150.1| RNA modification enzyme, MiaB family [Vulcanisaeta distributa DSM 14429] Length = 452 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 131/455 (28%), Positives = 219/455 (48%), Gaps = 41/455 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F V ++GC +N DS M S G+E ++ AD I++NTC +RE+A L Sbjct: 4 KFTVITFGCWLNKADSDIMITKLRSLGWEYTEDVESADTIIVNTCAVREEAERNELKLLK 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R+ +E ++VAGC+ + I SP ++ EL++ Sbjct: 64 RLS-------EEYPGKRLIVAGCLTRIRPATIKDVSPNAMLISSHGA-----ELIDE--- 108 Query: 146 GKRVVDTDYSVEDKFERLS-IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR---GI 201 VV ++ V +R + + Y G + IQ GC C+FCV R G Sbjct: 109 ---VVSSNTDVHVYEDRPAKYLPNYYPELHGHRYVVPIQVGCLGNCSFCVTKIGRMGFGR 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYS-LSEIKG 259 S + +V+ + G EI L GQ ++A+ R +G D +DLL L+++ G Sbjct: 166 VKSYGIDDIVNAITNAVSKGAREIYLTGQEISAYGRDRGYD-----LADLLEKILAKVDG 220 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMP------YLHLPVQSGSDRILKSMNRRHTAY 313 +R P ++S + + LDV+ + H+PVQSGSDR+L M R+++ Sbjct: 221 RFMVRLGMMEPLELSRIIDRL---LDVVKSDWRVYRFFHVPVQSGSDRVLMLMRRKYSVD 277 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 +R I+ RIR+ PD +++D IVGFPGETD+DF A++ L++++G + +YS R T Sbjct: 278 LFRDIVKRIRNAFPDATVATDIIVGFPGETDEDFWASVRLIEELGIDKVNLARYSRRPFT 337 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 + M EQV E VK ER + N +G+ + ++ + + V RS Sbjct: 338 EAAYM-EQVPEQVKKERSKIATDVFNRVALERNKTFIGREMWGIVSEVDFKGENYVVRSY 396 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + + + +IG ++V++TD L+G+L+ Sbjct: 397 NYKPIAV--RKADIGAFVRVKVTDATSQRLFGQLL 429 >gi|299066647|emb|CBJ37840.1| putative 2-methylthioadenine synthetase [Ralstonia solanacearum CMR15] Length = 453 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 135/477 (28%), Positives = 224/477 (46%), Gaps = 65/477 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + ADL+V+NTC ++A ++ Sbjct: 9 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 67 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G++I+ P V V GP + L E+ Sbjct: 68 IGEA-------LAENGK--VIVTGCLGAKKDAAGQDIITSVHPKVLAVTGP---HALGEV 115 Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 +E V T D F L + G A+L I EGC+ C+FC++P Sbjct: 116 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 167 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR +++V+ EA L+ GV E+ ++ Q+ +A W G+ L K Sbjct: 168 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPL---KTRM 224 Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 ++L+ +L E+ VRL Y +P + A G + +PYL +P+Q +L Sbjct: 225 TELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPEVL 281 Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 K M R A + +DRIR+ R P++ I S FI GFPGET+++F+ +D + + Sbjct: 282 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIAEAELD 338 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + F YSP G +++ + + V+ ER + VG+ + VL+++ Sbjct: 339 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLVDE 398 Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467 ++ G +GRS P + +V + K + GD + V+IT L+GE+ Sbjct: 399 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKTGDFVSVKITGADGHDLWGEV 453 >gi|157737373|ref|YP_001490056.1| MiaB-like tRNA modifying enzyme [Arcobacter butzleri RM4018] gi|114461634|gb|ABI75082.1| MiaB-like tRNA modifying enzyme [Arcobacter butzleri] gi|157699227|gb|ABV67387.1| MiaB-like tRNA modifying enzyme [Arcobacter butzleri RM4018] Length = 422 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 116/436 (26%), Positives = 215/436 (49%), Gaps = 31/436 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ + K++GC+ NV+D+ M M + +E ++A+++V+N+C + A +++ Sbjct: 8 QKVYFKTFGCRTNVFDTQVM--MSNLKDFEVTLDENEANIVVINSCTVTNSADSTARTYI 65 Query: 85 GRIRNL-KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 ++ L +N R V+ GC +GE + + + + ++ Q LL Sbjct: 66 NSLKKLPQNPR--------VIFTGCGVWTKGETLFKENKVDSLFGHSQKENINDLLLNEE 117 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 RF + D + DK +IV+ + R AF+ IQEGCD C++C++PY RG Sbjct: 118 RFFEA---GDLTHIDK----TIVEEFVGKSR---AFIKIQEGCDFRCSYCIIPYVRGDAR 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S S +++++ L NG E L G NV ++ K + + + LL +S IKG+ R+ Sbjct: 168 SYSEDKILEQVTTLASNGFGEFILTGTNVGSYGKK----QHTSLAKLLKKMSLIKGVRRI 223 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R + P + D K + + +LH+ +Q S +LK MNRR+ ++ + +R Sbjct: 224 RMGSIEPIQIDDEF-KEIINEPFMAKHLHIALQHTSKEMLKIMNRRNKVLSDLELFEFLR 282 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 A+ +DFIVG PGET+ ++ M+ + + +F YS R GTP + M Q+ Sbjct: 283 --ENGYALGTDFIVGHPGETEALWKEAMENLHRFPLTHVHAFTYSKRDGTPSATMKPQIK 340 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 ++ R L + ++ +F + +EVL+E+ ++ GK +G + + ++S Sbjct: 341 GDIAKVRYNELINIIEQKNYNFRKEN-KKTLEVLVEQ--EKNGKYIGLDQFFNQIEIDST 397 Query: 444 NHNIGDIIKVRITDVK 459 +GD + + +VK Sbjct: 398 ADLVGDWVYINDYEVK 413 >gi|148380361|ref|YP_001254902.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str. ATCC 3502] gi|153932059|ref|YP_001384581.1| RNA modification protein [Clostridium botulinum A str. ATCC 19397] gi|153935820|ref|YP_001388097.1| RNA modification protein [Clostridium botulinum A str. Hall] gi|238065360|sp|A7FVY1|RIMO_CLOB1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|238065364|sp|A5I4I1|RIMO_CLOBH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|148289845|emb|CAL83953.1| radical SAM superfamily protein [Clostridium botulinum A str. ATCC 3502] gi|152928103|gb|ABS33603.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str. ATCC 19397] gi|152931734|gb|ABS37233.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str. Hall] Length = 445 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 130/441 (29%), Positives = 220/441 (49%), Gaps = 37/441 (8%) Query: 31 SYGCQMNVYDSLRMEDMFF--SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 S GC N DS E M + ++ E V +A +I++NTC E A E+ + + ++ Sbjct: 10 SLGCDKNRIDS---ELMLYKLNEEAELVKDPKEAQVIIVNTCGFIETAKEESINTILQMA 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGK 147 + K + ++VV GC+ Q E+ P +++++G Y +L E ++ + G+ Sbjct: 67 SYKKTH----NCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLKSGE 122 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + S K+ I +G NR TA++ I EGC+ FCT+C +P RG S Sbjct: 123 K------SFYHKYSDTKINEG--NRILTTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ E L GV EI L+ Q+ + G + G+K +LL +S+++G+ +R Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTMY-GIDIYGKK-VLHELLRDISKVEGVKWIR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P +++ LI+ + D + YL LP+Q S+ +LK M R+ T II ++R Sbjct: 233 LLYCYPEEITKELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD- 383 I + + IVGFPGET+ +F + V + + FKYS GT + M EQ+D Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDVKLDKLGVFKYSKEEGTSAALMEEQIDE 352 Query: 384 --ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437 + + E ++ LQ+ + + N +G+ EV++E G ++ GR SP + Sbjct: 353 EIKEKREEEIMILQQSISK---DINKEKIGKTYEVIVE--GTKEDMYYGRNYEMSPEIDG 407 Query: 438 VVLNSKNHN--IGDIIKVRIT 456 + K+ N IGDIIKV++T Sbjct: 408 EIYFEKDENVKIGDIIKVKVT 428 >gi|289209542|ref|YP_003461608.1| MiaB-like tRNA modifying enzyme YliG [Thioalkalivibrio sp. K90mix] gi|288945173|gb|ADC72872.1| MiaB-like tRNA modifying enzyme YliG [Thioalkalivibrio sp. K90mix] Length = 453 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 128/459 (27%), Positives = 210/459 (45%), Gaps = 35/459 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 QR S GC + DS ++ ++GYE D ADL+V+NTC + A + + Sbjct: 13 QRVGFVSLGCPKALVDSEQILTRLRAEGYEIAADYDGADLVVVNTCGFIDDAVAESLDAI 72 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G + N R V+V GC+ + + E I P V V GP + + Sbjct: 73 GEAMD-ANGR--------VIVTGCLGK-DAERIHETHPGVLAVTGPHAFDEV-------- 114 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G V + FE L G R A+L I EGC+ C+FC++P RG +S Sbjct: 115 VGA-VHEHLPPPATPFESLVPPQGIRLTPRHY-AYLKISEGCNHRCSFCIIPSLRGDLVS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTFSDLLY---SLSE 256 R + +V+ EA +L GV EI ++ Q+ +A+ G G + SD+ + +L + Sbjct: 173 RPIGEVLAEAERLAAAGVREILVISQDTSAYGVDVKYRTGFHGGRPIRSDIAHLAEALGQ 232 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + VRL Y +P + G+ ++PYL +P+Q G R+LK+M R A Sbjct: 233 LGIWVRLHYVYPYPHVDRLIPLMGSGEDGGILPYLDMPLQHGHPRVLKAMRRPAAAERVL 292 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 + I + R PD+ + S FIVGFPGET+ +F ++ + + + +F YSP G + Sbjct: 293 ERIAKWREQVPDLTLRSTFIVGFPGETEAEFETLLEFLHEAQLDRVGAFAYSPVEGAAAN 352 Query: 377 NMLEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 + + V E V+ ERL + +Q ++ ++ ++ + G + +P Sbjct: 353 ELADPVPEAVREERLARFMDVQARISADRLRRRIGSQPVVLVDEVHADGTVIARSAAEAP 412 Query: 434 WLQSVV----LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + V+ ++ + +IGD I+V ITD L EL Sbjct: 413 EIDGVIRVAGIDPTSVDIGDFIEVAITDTDEHDLIAELA 451 >gi|17546355|ref|NP_519757.1| hypothetical protein RSc1636 [Ralstonia solanacearum GMI1000] gi|81504984|sp|Q8XYX0|RIMO_RALSO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|17428652|emb|CAD15338.1| putative 2-methylthioadenine synthetase protein [Ralstonia solanacearum GMI1000] Length = 453 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 135/477 (28%), Positives = 224/477 (46%), Gaps = 65/477 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + ADL+V+NTC ++A ++ Sbjct: 9 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 67 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G++I+ P V V GP + L E+ Sbjct: 68 IGEA-------LAENGK--VIVTGCLGAKKDAAGQDIITSVHPKVLAVTGP---HALGEV 115 Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 +E V T D F L + G A+L I EGC+ C+FC++P Sbjct: 116 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 167 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR +++V+ EA L+ GV E+ ++ Q+ +A W G+ L K Sbjct: 168 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPL---KTRM 224 Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 ++L+ +L E+ VRL Y +P + A G + +PYL +P+Q +L Sbjct: 225 TELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPEVL 281 Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 K M R A + +DRIR+ R P++ I S FI GFPGET+++F+ +D + + Sbjct: 282 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIAEAELD 338 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + F YSP G +++ + + V+ ER + VG+ + VL+++ Sbjct: 339 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLVDE 398 Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467 ++ G +GRS P + +V + K + GD + V+IT L+GE+ Sbjct: 399 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKAGDFVSVKITGADGHDLWGEV 453 >gi|149371257|ref|ZP_01890743.1| 2-methylthioadenine synthetase [unidentified eubacterium SCB49] gi|149355395|gb|EDM43954.1| 2-methylthioadenine synthetase [unidentified eubacterium SCB49] Length = 436 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 133/456 (29%), Positives = 223/456 (48%), Gaps = 51/456 (11%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC----HIREKAAEKVYSFL 84 V + GC NVYDS + + E V+ ++ +++V+NTC + +E++ + F+ Sbjct: 13 VVTLGCSKNVYDSEVLMGQLKANNKEVVHE-EEGNVVVINTCGFIANAKEESVNTILEFV 71 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + +EG V V GC+++ ++ + P V+ G LP LL Sbjct: 72 --------QKKEEGIVDKVFVTGCLSERYKPDLQKEIPDVDQYFGTT---ELPGLL---- 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + DY E ERL+ Y A+L I EGCD+ C+FC +P RG S Sbjct: 117 ---KALGADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIPIMRGKHKS 166 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--V 261 + +V EA KL NGV E+ L+ Q++ + GLD +K ++LL L++++G+ + Sbjct: 167 TPMEDLVIEAEKLAANGVKELILIAQDLTYY---GLDLYKKRNLAELLEKLAKVEGIEWI 223 Query: 262 RLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 RL Y T P D+ + K + Y+ +P+Q +D ILKSM R T + +++ Sbjct: 224 RLHYAFPTGFPMDVLSLMHKEPK----ICNYIDIPLQHIADPILKSMRRGTTKAKTTKLL 279 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R+ P++AI + IVG+PGET +D+ + V ++ + + F YS T N+ Sbjct: 280 QDFRAAVPEMAIRTTLIVGYPGETQEDYETLREWVREMRFERLGCFTYSHEENTHAYNLE 339 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435 + V E VK ER + + + N +G VLI++ KE VGR SP + Sbjct: 340 DDVPEAVKMERANEIMEIQSQISWELNQQKIGNEYRVLIDR--KEGAYYVGRTEFDSPDV 397 Query: 436 QS-VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + V++N++ + G+ V+IT + LY E+V Sbjct: 398 DNEVLINAEEGYLRTGEFFNVKITGAEDFDLYAEVV 433 >gi|110637073|ref|YP_677280.1| 2-methylthioadenine synthetase [Cytophaga hutchinsonii ATCC 33406] gi|123354783|sp|Q11XC6|RIMO_CYTH3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|110279754|gb|ABG57940.1| SSU ribosomal protein S12P methylthiotransferase [Cytophaga hutchinsonii ATCC 33406] Length = 437 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 124/449 (27%), Positives = 210/449 (46%), Gaps = 38/449 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQG--YERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRI 87 + GC N+ DS + G E + D+++++V+NTC + A E + + L I Sbjct: 15 TLGCSKNLVDSENLLTQLRGNGIEAEHESKNDNSNVVVINTCGFIDNAKQESIDTILRYI 74 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 +N I + + V+GC++Q +++ R P V+ G LP +L++ R Sbjct: 75 DAKENGLIDK-----IYVSGCLSQRYKDDMEREMPQVDAFFGSN---ELPAILKKFR--- 123 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 DY E ERL Y A++ I EGCD+ C+FC +P RG +S + Sbjct: 124 ----ADYKHELVGERLLTTPSHY-------AYVKIAEGCDRPCSFCAIPVMRGKHVSTPM 172 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +V +A+ + G E+ L+ Q++ + GLD +K SDLL +LS+++G+ +R Sbjct: 173 EDLVKQAKGMAAKGTKELILIAQDLTYY---GLDIYKKRNLSDLLKNLSDVEGIDWIRLQ 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P ++ + + Y+ +P+Q GS +LK M R + +I IR Sbjct: 230 YAYPSGFPLDVLDVMAERSNICKYIDMPLQHGSSDMLKLMRRGIDRPKTEDLIKTIRDKV 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 P IA + I+G PGET+ DF V++ + + +F YS T +M + + + Sbjct: 290 PGIAFRTTMIIGHPGETEKDFDELCSFVEEQRFDRLGAFTYSHEEHTHSYSMEDTIPQEE 349 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNS 442 K ER + N+ +G +VL ++ KE G +GR SP + + V+ S Sbjct: 350 KEERQATIMSIQEGISAELNEKKIGNTYKVLFDR--KEGGYFIGRTEHDSPEVDNEVMVS 407 Query: 443 KNHN---IGDIIKVRITDVKISTLYGELV 468 IGD V+I D L+GE+V Sbjct: 408 AKDQYVRIGDFANVKINDAAEFDLFGEIV 436 >gi|307128628|ref|YP_003880658.1| putative MiaB-like protein [Candidatus Sulcia muelleri CARI] gi|306483090|gb|ADM89960.1| putative MiaB-like protein [Candidatus Sulcia muelleri CARI] Length = 431 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 31/424 (7%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N ++ + + F +GYE V AD+ ++NTC + K A+K L RI Sbjct: 12 GCKLNFAETDTIINKFLKKGYEYVKFRSFADIYIINTCSV-TKNADKELKKLVRIA---- 66 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 IK + +V GC +Q +EI + I ++++G + + + L K+ Sbjct: 67 --IKNNVNGFIVAIGCYSQVNPKEISLINGI-DLIIGSKEKFNIINYLT-----KKNNAN 118 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 YS K E + I Y++ +FL IQ+GCD C++C +P RG+ S ++ ++ Sbjct: 119 IYSCSLKEENMFI--PSYSKLNRTRSFLKIQDGCDYKCSYCTIPKARGLSRSDNIKNIIK 176 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL----YSLSEIKGLVRLRYTTS 268 A+ +I G+ EI L G N+ + + F +L+ Y L++IK R+R ++ Sbjct: 177 YAKNIIKQGIKEIVLTGVNIGDFGKIYNKKNESNFLELIQAMEYYLNDIK---RIRISSI 233 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P +SD +I + + + H+P+QSGSD IL M RR++ Y + I +I ++ P Sbjct: 234 EPNLLSDDIINFISKSKIFVNHFHIPLQSGSDEILNKMKRRYSKKIYLERIKKIFNIMPY 293 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I +D IVGFPGE +++F T L+ ++ + F +S R T + + + + +++ Sbjct: 294 ACIGTDVIVGFPGEKEENFLETYSLLSELEISYLHVFPFSERKNTEAFFLKDSITQEIRS 353 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--------RSPWLQSVVL 440 +R L K ++++ +F + + VL E + K+ G + G ++ W +V Sbjct: 354 KRSKILIKLSKKKKYNFYRKHINKKKNVLFE-NKKKSGFIYGYTDNYIRTKTNWKSELVN 412 Query: 441 NSKN 444 KN Sbjct: 413 KIKN 416 >gi|86133829|ref|ZP_01052411.1| MiaB-like tRNA modifying enzyme YliG [Polaribacter sp. MED152] gi|85820692|gb|EAQ41839.1| MiaB-like tRNA modifying enzyme YliG [Polaribacter sp. MED152] Length = 451 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 133/464 (28%), Positives = 229/464 (49%), Gaps = 46/464 (9%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQG----YERVNSMDDADLIVLNTCHIREK 75 + I + V + GC NVYDS + + G +E VN DD +++V+NTC K Sbjct: 4 KTIKKNKINVVTLGCSKNVYDSEVLMGQLKANGKNVVHEDVN--DDGNIVVINTCGFIGK 61 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134 A E+ + L ++ KE G++ V V+GC+++ ++ P V+ G + Sbjct: 62 AKEESIDTI-----LHYAKRKEAGEVDKVFVSGCLSERYKPDLEAEIPNVDQYFGT---H 113 Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 LP LL +V++ DY E ERL+ Y A+L I EGC++ C+FC Sbjct: 114 DLPNLL-------KVLEADYKHELIGERLTTTPKHY-------AYLKIAEGCNRPCSFCA 159 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYS 253 +P RG S + +V EA KL + G+ EI L+ Q++ + GLD +K ++LL + Sbjct: 160 IPLMRGKHRSTPIEDLVTEATKLAEKGIKEIMLIAQDLTYY---GLDIYKKRALAELLEA 216 Query: 254 LSEIKGL--VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 L ++ G+ +R+ Y T P D+ + + + + YL +P+Q + +LKSM R Sbjct: 217 LVKVDGIEWIRMHYAFPTGFPMDVLEVMKREPK----VCNYLDIPLQHINTELLKSMKRG 272 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 T + +I + R P++AI + IVG+PGET++ F+ D V+++ + + +F+YS Sbjct: 273 TTHEKTTALIHKFREAVPEMAIRTTLIVGYPGETEEMFQELKDWVEEMRFERLGAFEYSH 332 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGK 427 T + + V VK +R+ + + + N VG+ L ++ E G+ Sbjct: 333 EENTGAYVLEDDVPAEVKFKRVNEIMEVQSQISWELNQQKVGKTFRCLFDRKDGEYFYGR 392 Query: 428 LVGRSPWLQS-VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468 SP + + V+++++ H IG+ I V I + LYG V Sbjct: 393 TESDSPDVDNDVLVDAREHYIKIGEFIDVEIYEAGDYDLYGTPV 436 >gi|294011253|ref|YP_003544713.1| 2-methylthioadenine synthetase [Sphingobium japonicum UT26S] gi|292674583|dbj|BAI96101.1| 2-methylthioadenine synthetase [Sphingobium japonicum UT26S] Length = 468 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 139/463 (30%), Positives = 214/463 (46%), Gaps = 54/463 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ S GY+ AD++++NTC + A E+ +G Sbjct: 28 SLGCPKALVDSERILTKLRSDGYQMSADYAGADVVLVNTCGFLDSAKEESLEAIGEA--- 84 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I E G V+V GC+ E E I + P V V G Y E + A V Sbjct: 85 ----IAENGR--VIVTGCMGN-EAELIRAKFPQVLAVTGAHQY----EAVVNA-----VH 128 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + + + F L + +GG ++L I EGC+ C+FC++P RG SR + V Sbjct: 129 EASPPIPNAFVDL-VPEGGLKLTPRHYSYLKISEGCNHRCSFCIIPSLRGDLASRRIDAV 187 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA KL+ G E+ ++ Q+ +A W+G+ + + L L +G Sbjct: 188 LREAEKLVHAGTKELLIISQDTSAYGVDTRHEARQWKGREVRAHMTDLARELGQLRTAEG 247 Query: 260 ---LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 VRL Y +P D +I D +L PYL +P Q + ILK+M R A E + Sbjct: 248 TPPWVRLHYVYPYPH--VDHVIPLMAD-GLLTPYLDIPFQHAAPSILKAMRR--PANEAK 302 Query: 317 QIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 ++DRIR R PDIAI S F+VGFPGET+ DF + +D+ + +F++ P G Sbjct: 303 -VLDRIRKWRDICPDIAIRSSFVVGFPGETEADFDYLLQWLDEAQLDRVGAFRFEPVEGA 361 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKL--V 429 +++ V E VK ER + ++ + A VG+++ V+I++ G+ E G + Sbjct: 362 AANDLPGAVPEEVKEERYQRIMERTAAISAARLQAKVGRVLPVIIDEVGEADEDGSIGAT 421 Query: 430 GRS----PWLQ-SVVLNSKNHNI--GDIIKVRITDVKISTLYG 465 RS P + +V L + G I+ V I D LYG Sbjct: 422 ARSQADAPEIDGNVFLRDVGEGLAPGSILNVLIEDADEHDLYG 464 >gi|304384048|ref|ZP_07366503.1| 2-methylthioadenine synthetase [Prevotella marshii DSM 16973] gi|304334836|gb|EFM01111.1| 2-methylthioadenine synthetase [Prevotella marshii DSM 16973] Length = 443 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 126/437 (28%), Positives = 200/437 (45%), Gaps = 39/437 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + G V + AD+ ++NTC + E A K + R+ Sbjct: 16 TLGCKLNFSETSTFGQLLQEMGVRTVAEGEYADICLINTCSVTEVADHKCRQAIRRM--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR----FG 146 ++E VVV GC AQ + I V++V+G L + L RA G Sbjct: 73 ----VREHPGAFVVVTGCYAQLAPDAIAGIEG-VDLVLGANEKADLIQHLSRAWSEELAG 127 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K + + + NR R FL +Q+GCD FCT+C +P+ RG + S Sbjct: 128 KHTTCSITGTTAEIRSFAPSCARGNRTR---YFLKVQDGCDYFCTYCTIPFARGRSRNPS 184 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + +V++A G EI L G N+ G+ E +L+ +L ++G+ R R + Sbjct: 185 IESLVEQAETAARQGGKEIVLTGVNI----GEFSTAEGLGLLELVKTLDCVEGIQRFRIS 240 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P + D LI + MP+ H+P+QSGSD +L+ M R + + + +D IR Sbjct: 241 SIEPDLLDDELIAYCAESRAFMPHFHIPLQSGSDAVLRLMERHYDTKLFAEKVDTIRRYM 300 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVD 383 PD I D +VG GET + F T +D + Q F YS R GT ++ D Sbjct: 301 PDAFIGVDVMVGARGETPEYFDETYRFLDSLDITQLHVFPYSERPGTRALRIPYIVSDHD 360 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKE----------KGKLVGR 431 + ++++RLL L + + +F +G EVL+EK HGK + +L G+ Sbjct: 361 KRLRSKRLLELSDR---KTRAFYAKHIGTTAEVLLEKGTHGKAVMHGFTRNYIRVELRGQ 417 Query: 432 SP--WLQSVVLNSKNHN 446 +P L VVL HN Sbjct: 418 APDNHLVHVVLGDFTHN 434 >gi|161528769|ref|YP_001582595.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1] gi|160340070|gb|ABX13157.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1] Length = 422 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 129/451 (28%), Positives = 217/451 (48%), Gaps = 40/451 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + FV+SYGC + DS + + + G+ V ++DL V+ TC +++ A K+ + Sbjct: 3 KIFVESYGCSASFADSEMISGLILNGGHTLVEDSSESDLNVVVTCSVKDATANKM---VH 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI++LK + VVAGC+ +AE E + + S +++ GP + + ++++ Sbjct: 60 RIKSLKTKPL--------VVAGCLPKAEKETVEKFSENASLL-GPNSLGKTLQVIDSTLK 110 Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ + DTD LS V R + I GC CTFC ++G Sbjct: 111 GRKKIALEDTD---------LSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKISKGDL 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S L +V + + I+ G E+ L + + G D L+ ++SEI Sbjct: 162 QSYRLGDIVRQVKTEINEGCKEVWLTSTDNGCY---GFD-IGTDLPSLINAVSEIPEEFM 217 Query: 263 LRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +R +P M + LI+++ D D + +LH+PVQSGSD++L M R HTA +R+I+ Sbjct: 218 IRVGMMNPMYMPRIKEKLIESY-DNDKVFKFLHIPVQSGSDKVLHDMKRGHTAGTFREIV 276 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R PD IS+D IVGFP ET +DF T++L+D+ KYS R GT + Sbjct: 277 KKARERFPDFTISTDIIVGFPSETKEDFEKTVELLDETRPDVVNLSKYSARPGTEAAEW- 335 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQS 437 EQ+D R + +++ + + N +G +VL ++ E KG+ P Sbjct: 336 EQIDVAEVKSRSKRIFEQINKISLENNKKWIGWKGDVLFDEQTDEGIKGRNFAYKP---- 391 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + +IG + V I D ++L G++ Sbjct: 392 -VFVPEQVDIGQLHAVEIIDATQNSLLGKIA 421 >gi|302340232|ref|YP_003805438.1| MiaB-like tRNA modifying enzyme YliG [Spirochaeta smaragdinae DSM 11293] gi|301637417|gb|ADK82844.1| MiaB-like tRNA modifying enzyme YliG [Spirochaeta smaragdinae DSM 11293] Length = 441 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 136/446 (30%), Positives = 205/446 (45%), Gaps = 36/446 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSF 83 +R++++ GC N D+ + G++ V ADLI++N+C E A E V Sbjct: 4 KRYYIEKLGCAKNQVDAEIIAARLDDAGWQYVEDAGAADLIIINSCGFIEAARQEAVNVT 63 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L + +RI + AGC+AQ G +L ++ V G + ++LE Sbjct: 64 LSARADYPKARI--------LFAGCMAQRYGARLLEEMTEIDGVFGNFAVDDITDILEPL 115 Query: 144 RFGKRVV--DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 KR V + + RL G +++L I EGC+ FC++C +P RG Sbjct: 116 FEDKRPVLLPEETKLACNRNRLFSFPG--------SSYLRISEGCNHFCSYCAIPLIRGS 167 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 S + QVV EA +LI NGV EI L+ Q++ A+ G D G F +LL LS ++G Sbjct: 168 LRSVPMEQVVKEADRLIRNGVKEINLVAQDLAAY---GTDQGTASLFPELLRRLSSLEGD 224 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 LR HP + ++PY +P+Q +IL SM RR A Y +I Sbjct: 225 FWLRMLYIHPDHFPKEIFPILQADSRILPYFDIPLQHAHPKILSSMGRRGDAEGYLALIR 284 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-- 378 IRS PD I S F++G+PGE + A + + A F +S GT + + Sbjct: 285 EIRSALPDATIRSTFLLGYPGEGGKEAAALESFIAEARLDWAGFFLFSREEGTKAALLRG 344 Query: 379 -LEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEKGKLVGRSPWL 435 L Q AER L +KL+E +S A VG +VLIE+ KE+ +GR+ W Sbjct: 345 PLMQRLAMPAAERRLRRLQKLQE-SISMERAALRVGIETKVLIEEPVKEEDVALGRA-WF 402 Query: 436 Q------SVVLNSKNHNIGDIIKVRI 455 Q + V+++ GD + RI Sbjct: 403 QAPEVDGATVVSAPALKAGDWMTCRI 428 >gi|254497963|ref|ZP_05110727.1| Fe-S oxidoreductase [Legionella drancourtii LLAP12] gi|254352857|gb|EET11628.1| Fe-S oxidoreductase [Legionella drancourtii LLAP12] Length = 435 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 141/461 (30%), Positives = 217/461 (47%), Gaps = 59/461 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ +QGYE V+S DA ++V+NTC + A ++ + + Sbjct: 9 SLGCPKALVDSERIITQLRAQGYELVSSYQDAGVVVINTCGFIDSAVKE------SLDTI 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K + + G V+V GC+ A+ + I P V V G Y + VV Sbjct: 63 KEAMAENGR---VIVTGCLG-AKADVIKEACPDVLHVSGAHAY-------------EEVV 105 Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + D F +L G R A+L I EGC++ CTFC++P RG S Sbjct: 106 NAVHEHLPPPADPFMQLVPPQGIKLTPRHY-AYLKISEGCNQKCTFCIIPTMRGKLQSYP 164 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 L QV+ EA+KL + GV EI ++ Q+ +A W+GK ++ F DL L Sbjct: 165 LVQVLSEAKKLKEAGVNEILVISQDTSAYGVDTRYQPVTWQGKTVNTR---FYDLCEQLG 221 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 E+ VRL Y +P D +I D +++PYL +P+Q S R+LK+M R ++ Sbjct: 222 ELGIWVRLHYVYPYPH--VDEIIPLMRD-GLILPYLDIPLQHASSRVLKAMKRPASSENT 278 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I R V PDI + S FIVGFPGET+++F +D + + + FKYSP G Sbjct: 279 LMRIAAWREVCPDITLRSTFIVGFPGETEEEFEELLDFLAEAQLDRVGCFKYSPVEGAKA 338 Query: 376 SNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 +++ V E VK E R + LQ ++ ++ +G VLI++ E +++ RS Sbjct: 339 NDLANPVPEEVKEERYHRFMQLQAEISRTKLQNK---IGTTQTVLIDEITPE--QIIARS 393 Query: 433 ----PWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGEL 467 P + +V+ + IG V I D L+ E Sbjct: 394 KSDAPEIDGLVILPPTPGIKIGSFANVTIIDSDDYDLFAEF 434 >gi|219853312|ref|YP_002467744.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c] gi|219547571|gb|ACL18021.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c] Length = 420 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 116/422 (27%), Positives = 204/422 (48%), Gaps = 52/422 (12%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +V + +++ YGC N D+L + ++ +QG V + ++AD +VLNTC + E++ Sbjct: 21 LVGKDVYLEEYGCTFNHADTLALVEVLKAQGCTIVPTPEEADAVVLNTCTVI-GPTERLM 79 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L+ R G DL + GC+ + + I V P+ +P E Sbjct: 80 --------LRQMRRYSGHDLYLT--GCMPAVQMDAICE-------VCSPKV---IPP--E 117 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R +V+T + + +GC C++C+ RG Sbjct: 118 EIRAAYTLVNTTVP-------------------SAIGVVQVGQGCAGRCSYCITRNARGP 158 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S + + ++ +DNG E+ L GQ++++W GLD + + DLL ++ G Sbjct: 159 LQSFQPPDIYNRVQQAVDNGAVEVQLTGQDLSSW---GLDLGR-SLPDLLRGITAFPGDY 214 Query: 262 RLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 RLR +P + D LI A+ D + +LHLP+QSGSDR+L +MNR +TA + +QI Sbjct: 215 RLRLGMMNPATVLPILDDLIAAYQS-DRIFQFLHLPIQSGSDRVLAAMNRSYTASDVQQI 273 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + R V PD+ + +D IVGFPGETD DF T+ ++ + + +YS R GTP ++ Sbjct: 274 LRAFREVHPDLTLMTDLIVGFPGETDQDFEETLQMITALSPNKVNMTRYSGRPGTPAAD- 332 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 L + ++VK +R + + N +G+ + V++ + ++ G ++ R Q++ Sbjct: 333 LPDLQDSVKKDRSRAVNDHVTTLYHQKNSRWIGEEVGVVVTEQ-RKLGSVITRDERYQNI 391 Query: 439 VL 440 V+ Sbjct: 392 VI 393 >gi|121595452|ref|YP_987348.1| ribosomal protein S12 methylthiotransferase [Acidovorax sp. JS42] gi|238065275|sp|A1WAJ7|RIMO_ACISJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|120607532|gb|ABM43272.1| SSU ribosomal protein S12P methylthiotransferase [Acidovorax sp. JS42] Length = 463 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 136/486 (27%), Positives = 216/486 (44%), Gaps = 60/486 (12%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 +SQ + P+ FV S GC N+ DS + ++GYE + + ADL+++NTC Sbjct: 1 MSQALSPAKTPKIGFV-SLGCPKNLTDSELLLTQLSAEGYETSKTFEGADLVIVNTCGFI 59 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVG 129 ++A ++ +G + E G V+V GC+ GE + P V V G Sbjct: 60 DEAVKESLDTIGEA-------LAENGK--VIVTGCLGARAGETGGNLVKEVHPSVLAVTG 110 Query: 130 PQTYYRLPELLERARFGKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVT------AFLTI 182 P E++E VV T D F L +V GG+ + G+ A+L I Sbjct: 111 PHAAQ---EVME-------VVHTHCPKPHDPF--LDLVPGGFG-EAGIKLTPRHYAYLKI 157 Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-------- 234 EGC+ CTFC++P RG +SR + V+ EA+ L + GV E+ ++ Q+ +A Sbjct: 158 SEGCNHRCTFCIIPSMRGDLVSRPVGDVLKEAKALFEGGVKELLVISQDTSAYGVDVKYR 217 Query: 235 ---WRGKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290 W GK + L ++ G VRL Y +P + A G +++PY Sbjct: 218 TGFWDGKPVKTRTLELVQKLGEMAATYGAWVRLHYVYPYPSVDDIIPLMAQG---LVLPY 274 Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350 L +P Q +LK M R + + + I R R P+I I S FI GFPGET+++F+ Sbjct: 275 LDVPFQHSHPDVLKRMKRPASGEKNLERILRWREACPEIVIRSTFIAGFPGETEEEFQHL 334 Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410 +D V + +A F YS G + + + ++ ER E + V Sbjct: 335 LDFVREAQIDRAGCFAYSDVEGAAANELPGMLPMELREERRARFMAVAEEVSTAKLQRRV 394 Query: 411 GQIIEVLIEK-----HGKEKGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVK 459 GQ ++VL+++ G+ +P + VV SK + +GD +K RI + Sbjct: 395 GQTMQVLVDQAVGLGKKGGVGRSYADAPEIDGVVHLLPPEKFSKTYKVGDFVKARIVGTQ 454 Query: 460 ISTLYG 465 L G Sbjct: 455 GHDLVG 460 >gi|159904885|ref|YP_001548547.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C6] gi|159886378|gb|ABX01315.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C6] Length = 425 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 123/455 (27%), Positives = 234/455 (51%), Gaps = 44/455 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +++ YGC +N D+ +++ + +E +++DD+D+IV+NTC +R++ ++ S + Sbjct: 2 KIYIEGYGCTLNTADTEIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-- 142 ++L D VVVAGC+A+A ++I + +V++ P+ +L+ Sbjct: 62 EYFKSL---------DKKVVVAGCMAKALPKKI---KNLADVLIMPREAQYSGIILKNNL 109 Query: 143 -----ARFGKRVVDTDYSVEDKF-ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 + GK + + + ED+ E++ V +G+ L I EGC CT+C+V Sbjct: 110 LKGCSEKNGKS--NENLNFEDQLNEKIKKVSS-----QGLITALPICEGCLGSCTYCIVK 162 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 RG +S + +A +L+ G + + Q+ + GLD + +L+ +SE Sbjct: 163 RARGNLVSYDRDLIFKKAEELVKTGTKCLLVTAQDTACY---GLDNND-SLPNLINDISE 218 Query: 257 IKGLVRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 I +R H + + D LI++ V+ +LHLP+QSG D++LK MNR ++ Sbjct: 219 IPEKFAMRIGMMHAKFAEPLLDELIESFKSEKVV-KFLHLPIQSGDDQVLKDMNRNYSVD 277 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 E+ +++ + ++ ++D IVGFP ET++ F+ T+++V KI + KYS R T Sbjct: 278 EFISVLNEFKLKIKNLNFTTDVIVGFPTETEEAFQNTLEIVKKIKPDFTHAAKYSQRKYT 337 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 + +L+QVD ++ ER L + RE N +G+ E+L+ K +G + Sbjct: 338 KAA-VLKQVDTKIRKERSEILNELRRELSYENNKRHIGETFEILVTKTN------LGVTN 390 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++V+ + +N IG+ +V++T K L G+L+ Sbjct: 391 NCKNVIFD-ENAKIGEFRQVKVTGAKTFGLSGKLL 424 >gi|160890923|ref|ZP_02071926.1| hypothetical protein BACUNI_03368 [Bacteroides uniformis ATCC 8492] gi|317479661|ref|ZP_07938785.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 4_1_36] gi|156859922|gb|EDO53353.1| hypothetical protein BACUNI_03368 [Bacteroides uniformis ATCC 8492] gi|316904162|gb|EFV25992.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 4_1_36] Length = 438 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 114/390 (29%), Positives = 187/390 (47%), Gaps = 16/390 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K R Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEVADKKC-------RQA 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + +K+ VVV GC AQ + E + + V+VV+G + L L K Sbjct: 69 IHKLVKQHPGAFVVVTGCYAQLKPETVAKIEG-VDVVLGAEQKKDLLHYL--GNLQKHET 125 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y+ + + +R FL +Q+GCD +C++C +P+ RG + S++ + Sbjct: 126 GEAYT--SALKDIRSFAPSCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGSIASM 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++A + G EI L G N+ + GK GE TF DL+ +L E++G+ R R ++ P Sbjct: 184 VEQASQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDEVEGIERYRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I+ MP+ H+P+QSGSD +LK M RR+ + I +I+ V PD Sbjct: 240 NLLTDEIIEYVSRSRRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKIKKIKEVMPDSF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I D IVG GET++ F + + + Q F YS R GT + V K R Sbjct: 300 IGVDVIVGTRGETEEYFGQAYEFIKSLDVTQLHVFSYSERPGTQALKIDHVVAPEEKHRR 359 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 L + E+ +F +GQ + VL+E+ Sbjct: 360 SQQLLELSDEKTRAFYARHIGQTMPVLLER 389 >gi|328955426|ref|YP_004372759.1| RNA modification enzyme, MiaB family [Coriobacterium glomerans PW2] gi|328455750|gb|AEB06944.1| RNA modification enzyme, MiaB family [Coriobacterium glomerans PW2] Length = 444 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 106/362 (29%), Positives = 169/362 (46%), Gaps = 29/362 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R V + GC++N +S R+E G+ ++ +ADLI++NTC + +A K + Sbjct: 10 RARVVNIGCRVNRVESDRIEAELARAGFA-LDETGEADLIIINTCAVTGEAEAKTRKAVR 68 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R S V+ GC + S V+V P Sbjct: 69 RALVASPS-------ARVIATGCSVNLNASALAALSD--RVIVEP--------------V 105 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA--FLTIQEGCDKFCTFCVVPYTRGIEI 203 +RV RG A + +Q+GC++ C++C+V RG E Sbjct: 106 KERVCARAAQAAAVLGAAPCAPSAVGSVRGTRARVGVKVQDGCNRRCSYCIVWRARGPER 165 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S ++ V R+L GV E+ L G N+ AW G G G +DLL ++ + R+ Sbjct: 166 SVPVAAVTGRVRELAAAGVAEVVLTGVNLGAWAGSGRAGGTADIADLLEAVLGETDIARV 225 Query: 264 RYTTSHPRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R ++ P D+S L+ AH V PYLHLP+QSG L+ M R ++A ++ ++ R Sbjct: 226 RLSSIEPMDVSGRLLAVMAHSSRRV-APYLHLPLQSGCSATLRRMGRPYSAQDFAELARR 284 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R +A+S D I GFPGETD++F A+ +L +IG+++ F+YS R GTP + + Sbjct: 285 SRRSIAGVALSCDIIAGFPGETDEEFEASFELCARIGFSRMHVFRYSARPGTPAAAASGR 344 Query: 382 VD 383 ++ Sbjct: 345 IE 346 >gi|325953666|ref|YP_004237326.1| ribosomal protein S12 methylthiotransferase rimO [Weeksella virosa DSM 16922] gi|323436284|gb|ADX66748.1| Ribosomal protein S12 methylthiotransferase rimO [Weeksella virosa DSM 16922] Length = 434 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 131/453 (28%), Positives = 220/453 (48%), Gaps = 37/453 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + + GC NVYDS + + E V+ D++V+NTC + A E+ + + Sbjct: 9 KKINIVTLGCSKNVYDSEVLMGQLQANKKEVVHE-GVGDIVVINTCGFIDNAKEESINTI 67 Query: 85 GRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L+ +KE G++ V V GC+++ ++ P V+ G + LP LL Sbjct: 68 -----LEYVDLKEQGEVEKVFVTGCLSERYKPDLEAEIPNVDQYFGTRD---LPLLL--- 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + DY E ERL+ Y A+L I EGCD+ C+FC +P RG I Sbjct: 117 ----KALGADYKHELVGERLTTTPRHY-------AYLKIAEGCDRPCSFCAIPLMRGGNI 165 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 S+ + ++V EA+KL G E+ L+ Q++ + GLD ++ +DLL L ++ G+ Sbjct: 166 SKPIEELVIEAKKLAKKGTKELILIAQDLTYY---GLDLYKRRALADLLKELVKVDGVEW 222 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R + P + +++ + YL +P+Q S ILKSM R T + ++D+ Sbjct: 223 IRLHYAFPSGFPEDVLEVIKKEKKVCNYLDIPLQHISTDILKSMRRGTTKEKTNALLDKF 282 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PD+AI + IVG+PGET++ F + V + + + F YS T + + V Sbjct: 283 RQYVPDMAIRTTLIVGYPGETEEHFNEMKEWVKEQRFDRLGCFTYSHEENTHAYLLEDDV 342 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438 + VK +R+ + + + N +G+ VLI++ KE VGR SP + + Sbjct: 343 PQEVKEQRVEEIMEIQTQISYELNQEKIGKQFRVLIDR--KEGDNFVGRTEYDSPDVDNE 400 Query: 439 VLNSKNH---NIGDIIKVRITDVKISTLYGELV 468 VL + +IGD ++V I D L G+LV Sbjct: 401 VLINAEEVYLSIGDFVQVEIVDAYEFDLIGKLV 433 >gi|270295900|ref|ZP_06202100.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. D20] gi|270273304|gb|EFA19166.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. D20] Length = 438 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 114/390 (29%), Positives = 187/390 (47%), Gaps = 16/390 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K R Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEVADKKC-------RQA 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + +K+ VVV GC AQ + E + + V+VV+G + L L K Sbjct: 69 IHKLVKQHPGAFVVVTGCYAQLKPETVAKIEG-VDVVLGAEQKKDLLHYL--GNLQKHET 125 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y+ + + +R FL +Q+GCD +C++C +P+ RG + S++ + Sbjct: 126 GEAYT--SALKDIRSFAPSCSRGDRTRFFLKVQDGCDYYCSYCTIPFARGRSRNGSIASM 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++A + G EI L G N+ + GK GE TF DL+ +L E++G+ R R ++ P Sbjct: 184 VEQASQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDEVEGIERYRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I+ MP+ H+P+QSGSD +LK M RR+ + I +I+ V PD Sbjct: 240 NLLTDEIIEYVSRSRRFMPHFHIPLQSGSDEVLKLMRRRYDTALFASKIKKIKEVMPDSF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I D IVG GET++ F + + + Q F YS R GT + V K R Sbjct: 300 IGVDVIVGTRGETEEYFGQAYEFIKSLDVTQLHVFSYSERPGTQALKIDHVVAPEEKHRR 359 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 L + E+ +F +GQ + VL+E+ Sbjct: 360 SQQLLELSDEKTRAFYARHIGQTMPVLLER 389 >gi|255011267|ref|ZP_05283393.1| hypothetical protein Bfra3_19146 [Bacteroides fragilis 3_1_12] gi|313149079|ref|ZP_07811272.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137846|gb|EFR55206.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 439 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 115/393 (29%), Positives = 190/393 (48%), Gaps = 22/393 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + ADL ++NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADLCIVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +K+ VVV GC AQ + ++ + V+VV+G + L + L K Sbjct: 73 ----VKQHPGAFVVVTGCYAQLKPGDVAKIEG-VDVVLGAEQKKDLLQYL--GDLHKHEG 125 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y+ K + +R FL +Q+GCD FC++C +P+ RG + +++ + Sbjct: 126 GEAYTTATK--DIRSFAPSCSRGDRTRFFLKVQDGCDYFCSYCTIPFARGRSRNGTVASL 183 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 V++AR+ G EI L G N+ + GK GE TF DL+ +L +++G+ R R ++ P Sbjct: 184 VEQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDQVEGIERYRISSIEP 239 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I+ MP+ H+P+QSG D +L+ M RR+ + I +I+ V PD Sbjct: 240 NLLTDEIIEYVSTSRSFMPHFHIPLQSGCDEVLQLMRRRYGTELFASKIAKIKEVMPDAF 299 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK--- 387 I D IVG GETD+ F + + + Q F YS R GT + V K Sbjct: 300 IGVDVIVGTRGETDEYFEKAYEFISGLDITQLHVFSYSERPGTQALKIDHVVTPEAKHQR 359 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 ++RLL L + F +GQ + VL+EK Sbjct: 360 SQRLLALSDG---KTKDFYARHIGQTMPVLMEK 389 >gi|225620158|ref|YP_002721415.1| 2-methylthioadenine synthetase [Brachyspira hyodysenteriae WA1] gi|225214977|gb|ACN83711.1| MiaB, 2-methylthioadenine synthetase [Brachyspira hyodysenteriae WA1] Length = 440 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 117/416 (28%), Positives = 205/416 (49%), Gaps = 26/416 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSF 83 Q ++ S GC+ N D + + +G+ N+ +DAD+IV+NTC I + E + + Sbjct: 2 QNIYLHSLGCEKNTVDGEHILAILQKKGFNITNNPEDADIIVINTCAFIEDSKKESIDAI 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 K + K ++V+GC+++ E L V+ +G + + +E Sbjct: 62 FDHSMYKKYGKCKR-----LIVSGCMSERYKENFLEMFKEVDSAIGIYDLENILKAVEED 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 F +T+Y ++ +R+ N + ++ I +GC C+FC +P RG Sbjct: 117 GFHDAKENTEY--KEYGDRV-------NTGTKYSVYIRISDGCHANCSFCAIPGIRGEHR 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVR 262 SR + +V EA NG EI L+ Q + G D +K DLL +LS+++G+ Sbjct: 168 SRKIEDIVKEAENYAKNGAKEINLIAQETTFY---GYDIYKKLALPDLLKALSKVEGIEW 224 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDR 321 +R +P ++D +I++ + + ++PY +P+Q ILK MNR +Y+ YR++ID+ Sbjct: 225 IRVLYQNPVVLNDEIIESFFNTEKVVPYFDIPLQHVDKDILKDMNRGTRSYKFYREMIDK 284 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IRS D I + IVGFPGET + F+ + V + F YS T +L Sbjct: 285 IRSYNNDAVIRTSLIVGFPGETAESFKKLIKFVRNAKLDRVGVFTYSEEENTKA--LLIN 342 Query: 382 VDENVKAERLLCLQKKLREQ-QVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPW 434 + + ++L+ +K +R +VS + +G+ I+VLIEK ++ K +GRS + Sbjct: 343 KPKMSRNKKLILREKLMRAAIEVSEKRLERFIGRTIDVLIEKK-EDDNKFIGRSIY 397 >gi|218886794|ref|YP_002436115.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757748|gb|ACL08647.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 461 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 130/453 (28%), Positives = 205/453 (45%), Gaps = 32/453 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N D+ R+ + V M +AD++++NTC I E V + + + Sbjct: 8 SLGCPKNRVDTERLLGALGAP-VRPVARMAEADVVLVNTCGFILPAVEESVRTVVEAVDE 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 + + L+ VAGC+ GE ++ P V++ + Q+ P+LL RA + Sbjct: 67 ISGLARRP----LLAVAGCLVGRYGERDLAAELPEVDLWLPNQSIETWPDLLARAVGARV 122 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + ++ G R ++ A+L I +GC C+FC +P RG Sbjct: 123 AMGGGLAGSGTLAPGAVAPGYAGGTRLLSTGPSYAWLKISDGCRHNCSFCTIPSIRGAHR 182 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTFSDLLYSLSEIK 258 S +++ EAR+L+D GV E+ L+ Q+V AW G G K LL L + Sbjct: 183 STPAAELEREARQLLDMGVRELILVAQDVTAWGGDLENGPGGSAGKGDLRPLLDRLLPLP 242 Query: 259 GLVRLRYTTSHPRDMSD-CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 GL RLR +P ++D L +PY +P+Q +L M R A R Sbjct: 243 GLDRLRLMYLYPAGLNDDLLAYLAAAGAPFVPYFDVPLQHAHPDVLGRMGRPF-ARNPRV 301 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++DRIR PD A+ + IVGFPGET++ + A D V + + F Y GTP + Sbjct: 302 VVDRIRKHFPDAALRTSIIVGFPGETEEHYAALTDFVAETRFHHLGVFAYRAEEGTPAAA 361 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQ 436 M QVD+ VK R L + E ++CVGQ + VL++ H + G GR+ W Q Sbjct: 362 MPGQVDDKVKEWRRDALMEVQAEISEEIMESCVGQRLPVLVDAPHDEWPGLHTGRT-WFQ 420 Query: 437 SVVLNSKNHNIG-----------DIIKVRITDV 458 + ++ + G DI++ R D+ Sbjct: 421 APEIDGVTYVSGAGVIPGALVEADIVEARTYDL 453 >gi|90022971|ref|YP_528798.1| hypothetical protein Sde_3331 [Saccharophagus degradans 2-40] gi|123395607|sp|Q21FE3|RIMO_SACD2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|89952571|gb|ABD82586.1| conserved hypothetical protein [Saccharophagus degradans 2-40] Length = 479 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 124/450 (27%), Positives = 211/450 (46%), Gaps = 55/450 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ GY+ V S +DAD++V+NTC + A ++ +G Sbjct: 45 SLGCPKALVDSERILTQLKLDGYDVVPSYNDADVVVVNTCGFIDSAKQESLDAIGEA--- 101 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERARFGKRV 149 +KE G V+V GC+ + ++++ + P V V GP Y E + A G Sbjct: 102 ----MKENGK--VIVTGCMGKGNDAQVIKETYPNVLSVTGPAAY----EEVMGAVHG--- 148 Query: 150 VDTDYSVEDKFERLSIVD----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + K E ++D G A+L I EGC+ CTFC++P RG +SR Sbjct: 149 -----YIPPKKEHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHRCTFCIIPDMRGDLVSR 203 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254 + V+ EA +L+ G EI ++ Q+ +A W+G+ + K ++ +L Sbjct: 204 PIGDVLGEAERLVAAGTKEILVISQDTSAYGVDVKYRTGFWQGRPV---KTRMLEMCEAL 260 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 E+ VRL Y +P + + A G + +PYL +P Q S ++LK+M R + Sbjct: 261 GELGAWVRLHYVYPYPHVDNVIPLMAEGKI---LPYLDIPFQHASPQVLKNMRRPAHQEK 317 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + + + R + P++ + S F+VGFPGET+ DF+ +D + + + F+YSP G Sbjct: 318 TLERLAKWREMCPELVLRSTFVVGFPGETEQDFQILLDWLQEAQLDRVGCFEYSPVEGAK 377 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA----CVGQIIEVLIEKHGKE--KGKL 428 + + V + VK ER ++ E Q + + A VG ++V+I+ + G+ Sbjct: 378 ANALPNHVPDEVKRERW----ERFMETQQAISAAKLKQKVGYEMDVIIDSIDGDIATGRT 433 Query: 429 VGRSPWLQSVVL--NSKNHNIGDIIKVRIT 456 +P + VV + +G+ V IT Sbjct: 434 YADAPEIDGVVTFSGAAGMKVGEFSAVEIT 463 >gi|209878518|ref|XP_002140700.1| radical SAM domain-containing protein [Cryptosporidium muris RN66] gi|209556306|gb|EEA06351.1| radical SAM domain-containing protein [Cryptosporidium muris RN66] Length = 548 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 112/375 (29%), Positives = 188/375 (50%), Gaps = 45/375 (12%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++++GC N DS M + GYE VN +DD DLIV+N+C ++ + + + Sbjct: 89 RIMMRNFGCNHNRSDSESMNGLLVEYGYEIVNELDDCDLIVINSCTVKSPSEMSCRNLVE 148 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIV-NV-VVGPQTYYRLPELLERA 143 N K VVV GC+ QAE R P + NV V+G +R+ E++E Sbjct: 149 TALNKKK---------FVVVTGCIPQAE-----RTLPWLKNVSVLGVSYTHRIVEIVELT 194 Query: 144 RFGKRV----VDTDYSV------EDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 G V +++D S +DK F RL ++ RK + +T+ GC CT Sbjct: 195 LQGNIVEMISMNSDLSAIGTTKKQDKATFSRLPPLNLPKIRKNPLVEIITVSVGCLGNCT 254 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 +C Y+RG S ++ +++ + + G+ +I L ++ A+ GK + S L+ Sbjct: 255 YCKTKYSRGNLGSYTIETILNRVKTSLKEGIKQIWLTSEDTGAY-GKDIG---TNLSSLI 310 Query: 252 YSLSEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 Y + I G+ Y + +DM + L +H ++ +LH+PVQSGS+++L Sbjct: 311 YQILNIIPPDVMIRIGMTNPPYILNQIQDMVEVL--SHPNV---FEFLHIPVQSGSNKVL 365 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 +M R +T ++ +++D I S I I++D I GFPGET++D + T++L+ K + Sbjct: 366 TNMRRDYTREDFCKLVDEISSQLSLITIATDIICGFPGETEEDHQDTVELIKKYKFPVIN 425 Query: 364 SFKYSPRLGTPGSNM 378 K+ PR GTP + M Sbjct: 426 ISKFYPRPGTPAAKM 440 >gi|163869369|ref|YP_001610625.1| hypothetical protein Btr_2683 [Bartonella tribocorum CIP 105476] gi|161019072|emb|CAK02630.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 427 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 111/371 (29%), Positives = 181/371 (48%), Gaps = 31/371 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S + S G +++ D A I+ NTC + +A + + + R Sbjct: 7 TFGCRLNSYESEIIRKESTSSGLDQLK--DGA--IIFNTCAVTAEAVRQAKQAIRKAR-- 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144 +E ++V GC AQ E + + V++V+G +Y +LP+ Sbjct: 61 -----RENPHARIIVTGCAAQTEAQNFASMTE-VDLVLGNEDKLHAHSYRQLPDFGINHS 114 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 R+ D +E + +V R R AF+ +Q GCD CTFC++PY RG S Sbjct: 115 EKVRINDI---MEVQKIAPHMVSAMQERTR---AFVQVQNGCDHRCTFCIIPYGRGPSRS 168 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRL 263 + V+++ RKL G+ E+ L G ++ ++ G L G K T L + L + L RL Sbjct: 169 VPMGAVIEQIRKLTGEGIQEVVLTGVDLTSY-GHDLPG-KATLGKLTSAILHHVPDLARL 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ + + LI +MP+LHL +Q+G + ILK M RRH Q +R Sbjct: 227 RLSSIDSIEADEELINLLAYEKRIMPHLHLSLQAGDNMILKRMKRRHLREHAIQFCQELR 286 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + RP + +D I GFP ET++ F+ ++ L+ F +SPR GTP + M QV+ Sbjct: 287 AKRPTMVYGADLIAGFPTETEEMFQNSLALIKDCHLTHLHVFPFSPREGTPAARM-PQVN 345 Query: 384 ENV---KAERL 391 + +AERL Sbjct: 346 RKIVKMRAERL 356 >gi|298383745|ref|ZP_06993306.1| 2-methylthioadenine synthetase [Bacteroides sp. 1_1_14] gi|298263349|gb|EFI06212.1| 2-methylthioadenine synthetase [Bacteroides sp. 1_1_14] Length = 443 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 114/396 (28%), Positives = 196/396 (49%), Gaps = 28/396 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKILREAGVRTARKGEKADICVVNTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 +K+ VVV GC AQ + ++ + V+VV+G + L + L + G+ Sbjct: 73 ----VKQHPGAFVVVTGCYAQLKPGDVAKIKG-VDVVLGAEQKGDLLQYLGDLHKHEEGE 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 T + S D R R FL +Q+GCD FC++C +P+ RG + ++ Sbjct: 128 AFTTTTKDIRSFSPSCSRGD----RTR---FFLKVQDGCDYFCSYCTIPFARGRSRNGTV 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++AR+ G EI L G N+ + GK GE TF DL+ +L +++G+ R R ++ Sbjct: 181 ASMVEQARQAAAEGGKEIVLTGVNIGDF-GK-TTGE--TFFDLVKALDQVEGIERYRISS 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D +I+ MP+ H+P+QSG D +LK M RR+ + + +I+ V P Sbjct: 237 IEPNLLTDEIIEFVSRSRRFMPHFHIPLQSGCDEVLKLMRRRYDTALFASKVKKIKEVMP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDE 384 D + D IVG GET++ F + + Q F YS R GT + + ++ Sbjct: 297 DAFVGVDVIVGTRGETEEYFEQAYQFISGLDVTQLHVFSYSERPGTQALKIDYVVSPEEK 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + +++RLL L E+ F +GQ ++VL+EK Sbjct: 357 HQRSQRLLTLSD---EKTRVFYTRHIGQTMQVLMEK 389 >gi|297839059|ref|XP_002887411.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333252|gb|EFH63670.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 602 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 127/452 (28%), Positives = 214/452 (47%), Gaps = 36/452 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q ++K++GC N DS M + GY +DADL ++NTC ++ + + + + Sbjct: 64 QTIYIKTFGCSHNQSDSEYMAGQLTAFGYALTEVPEDADLWLINTCTVKSPSQSAMSTLI 123 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R R+ G +V+AGCV Q G L+ V+VV G Q R+ E++E Sbjct: 124 TRGRS---------GKKPLVIAGCVPQ--GSRDLKELEGVSVV-GVQQIDRVVEIVEETL 171 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G V + L +D R+ L I GC CT+C + RG S Sbjct: 172 KGHEVRLLTR------KTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGS 225 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL--- 260 ++ +V+ R +I GV EI L ++ A+ R G++ LL ++ +K L Sbjct: 226 YTVDSLVERVRTVISEGVKEIWLSSEDTGAYGRDIGVN-----LPILLNAI--VKELPSD 278 Query: 261 --VRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 LR ++P + + L + L + +LH+PVQSGSD +L +MNR +TA E+R Sbjct: 279 QSTMLRIGMTNPPFILEHLKEIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFR 338 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++D + + P + I++D I GFPGETD+DF T++L+ ++Q ++ PR GTP + Sbjct: 339 TVVDTLTELVPGMQIATDIICGFPGETDEDFSQTVELIKDYKFSQVHISQFYPRPGTPAA 398 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 M ++V + +R L + + G+ + I + + LVG + Sbjct: 399 KM-KKVQSKIVKQRSRDLTSVF--EAFAPYTGMEGREERIWITEIATDGIHLVGHTKGYV 455 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V++ +G RIT V +++GE++ Sbjct: 456 QVLVTGPESMLGTSAMARITSVGRWSVFGEVI 487 >gi|149278722|ref|ZP_01884858.1| 2-methylthioadenine synthetase [Pedobacter sp. BAL39] gi|149230717|gb|EDM36100.1| 2-methylthioadenine synthetase [Pedobacter sp. BAL39] Length = 444 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 131/459 (28%), Positives = 217/459 (47%), Gaps = 53/459 (11%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD---------DADLIVLNTCHIREKAAEK 79 V + GC N+YDS + G R NSMD D++V+NTC + A ++ Sbjct: 19 VITLGCSKNLYDSEVL------MGQLRGNSMDVVHEADKMGKDDIVVINTCGFIDNAKQE 72 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 + + LK+ EG V+V GC+++ E+ V+ G + Sbjct: 73 SIDTILQYSQLKD----EGKVGKVIVTGCLSERYKPELESEITNVDAFFGTNDLNNILHS 128 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 L +Y E ERL + A+ I EGC++ C+FC +P R Sbjct: 129 L----------GANYKHELIGERLLTTPSHF-------AYFKIAEGCNRPCSFCAIPLMR 171 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIK 258 G +SR + ++V+EA+ L NG E+ L+ Q++ + GLD K +LL LS++ Sbjct: 172 GKHVSRDMQELVNEAKILAANGTKELILIAQDLTYY---GLDIYGKRNLDELLRRLSDVN 228 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ +R ++P ++ A + D + YL +P+Q +D +LKSM R T + I Sbjct: 229 GIEWIRLQYAYPSGFPMEILDAMNERDNICKYLDMPLQHITDNMLKSMRRGITKQKTIDI 288 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +++IR P+IA+ + I G+PGET+ DF + V+ + + F YS T N+ Sbjct: 289 VNQIRDKVPNIAMRTTLICGYPGETEQDFEEMLSWVEDTRFDRLGCFTYSHEEKTHAHNL 348 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGR----S 432 ++ V + VK ER+ + + +Q +SF N VG+ +VL+++ KE +GR S Sbjct: 349 VDDVPDEVKQERVDAIME--LQQGISFDINQEKVGKTYKVLVDR--KEGDFFIGRTEFDS 404 Query: 433 PWLQSVVLNSKNHNI---GDIIKVRITDVKISTLYGELV 468 P + + VL G + VRI + LYG++V Sbjct: 405 PEVDNEVLIDAATGYAANGSFVNVRIDRAEDFDLYGQIV 443 >gi|218530899|ref|YP_002421715.1| MiaB-like tRNA modifying enzyme [Methylobacterium chloromethanicum CM4] gi|218523202|gb|ACK83787.1| MiaB-like tRNA modifying enzyme [Methylobacterium chloromethanicum CM4] Length = 410 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 109/353 (30%), Positives = 176/353 (49%), Gaps = 34/353 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N +S + +G+ NS + DL+V+NTC + +A + + R+ Sbjct: 7 TFGCRLNTVESEVL------RGHAEPNS-EGRDLVVVNTCAVTAEAGLQARKAIRRL--- 56 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRS----PIVNVVVGPQTYYRLPELLERARFG 146 SR + G + +VV GC G E+ R S P V +VG R + G Sbjct: 57 --SRERPGAE--IVVTGC-----GAEVERASYAAMPEVARLVGNAAKLRPASW----QSG 103 Query: 147 KRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 D E I G+ R AF+ +Q GCD CTFCV+P+ RG S Sbjct: 104 TAPAPEDIMAVRTAEPTHITTMSGHTR-----AFVPVQNGCDHRCTFCVIPFGRGNSRSV 158 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +++ V + R+++++G E+ L G ++ A+ G+ LD + + L+E+ L RLR Sbjct: 159 PVAEAVAQVRRIVEHGGREVVLTGVDLTAY-GRDLDSDLSLGRLVRTILAEVPDLARLRL 217 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ + LI A + LMP++HL +Q+G D ILK M RRH+ + ++ + +R + Sbjct: 218 SSIDSVEADADLIAAFAEEPRLMPHVHLSLQAGDDLILKRMKRRHSRADAIRLCETLRDL 277 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 RP + +D I GFP ET+ F ++DLV + G F YSPR TP + M Sbjct: 278 RPGLVFGADLIAGFPTETEAQFARSLDLVVECGLTHLHVFPYSPRPDTPAARM 330 >gi|296109521|ref|YP_003616470.1| RNA modification enzyme, MiaB family [Methanocaldococcus infernus ME] gi|295434335|gb|ADG13506.1| RNA modification enzyme, MiaB family [Methanocaldococcus infernus ME] Length = 411 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 124/442 (28%), Positives = 215/442 (48%), Gaps = 38/442 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + +V+ YGC +N D+ +++ +G+E S+D+A+++++NTC +R + K+ + Sbjct: 2 KVYVEGYGCVLNKADTEIIKESLIKEGFEITESLDEANIVIINTCVVRLETENKMMHRIN 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +L LV+VAGC+ +A E++ I P+ +R E+L Sbjct: 62 YLNSLGK---------LVIVAGCLPKALKEKVEGFYHIY-----PKEAHRAGEIL----- 102 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + T ED+ E + K + L I EGC C++C+V RG IS Sbjct: 103 --KDILTKKKKEDRGEEKELYKKLNYLKPKLVTPLPISEGCLGNCSYCIVKIARGKLISY 160 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 +V +A +L+ G + + Q+ + GLD G+ ++LL L +I+G +R Sbjct: 161 PREFLVRKAEELVKGGAKCLLITAQDTACY---GLDRGD--NLANLLKDLCQIEGEFIMR 215 Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 H + +S D +I+ + + + + +LHLP+QSG D ILK M R ++ E+ I+ Sbjct: 216 VGMMHAKYLSPILDEIIELYREEEKIGKFLHLPLQSGDDEILKLMGRGYSVDEFISIVKE 275 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 + D+ ++D IVGFPGET++ F T++++ K+ KY+ R GT + M +Q Sbjct: 276 FKRKVKDLCFTTDVIVGFPGETEEAFNNTLEVLRKLKPDYIHGAKYTQRKGTEAARM-KQ 334 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 +D ++ R L K RE N VG+ + LI + K G + + VV Sbjct: 335 LDTKIRKRRTEILDKLRRELSYLNNKKYVGREMRTLIIEKNK------GYTENFK-VVRF 387 Query: 442 SKNHNIGDIIKVRITDVKISTL 463 K +G KV+I D TL Sbjct: 388 EKEQEVGKFKKVKIKDATTFTL 409 >gi|46203010|ref|ZP_00052227.2| COG0621: 2-methylthioadenine synthetase [Magnetospirillum magnetotacticum MS-1] Length = 410 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 130/431 (30%), Positives = 208/431 (48%), Gaps = 42/431 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N +S + + ER DL+V+NTC + +A + + R+ Sbjct: 7 TFGCRLNTVESEVLRGHAEADARER-------DLVVVNTCAVTAEAGRQARKAIRRL--- 56 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +R + G + +VV GC A+ E P V +VG + PE A Sbjct: 57 --ARERPGAE--IVVTGCGAEVE-RGAYAAMPEVARLVGNAVKLK-PESWRGA------- 103 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 SV + + +++ R G++ AF+ +Q GCD CTFCV+P+ RG S Sbjct: 104 ----SVPEAADIMAVRAAEPTRIAGMSGHTRAFVPVQNGCDHRCTFCVIPFGRGNSRSVP 159 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRY 265 ++ V + R+++++G E+ L G ++ A+ G+ LD E T L+ + L E+ L RLR Sbjct: 160 VADAVAQVRRIVEHGGREVVLTGVDLTAY-GRDLDAE-LTLGRLVRTILGEVPDLARLRL 217 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ + LI A + LMP++HL +Q+G D ILK M RRH+ + +I +R + Sbjct: 218 SSIDSVEADAALIAAFAEEPRLMPHVHLSLQAGDDLILKRMKRRHSRADAIRICRTLRDL 277 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RP + +D I GFP ET+ F ++DLV + G F YSPR GTP + M V + Sbjct: 278 RPGLVFGADLIAGFPTETEAQFARSLDLVAECGLTHLHVFPYSPRPGTPAARM-PAVPGD 336 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 + ER L++ D VG VL E+ GR+ S+V S+ Sbjct: 337 IVRERAARLREAGTAALTRHLDGEVGARRRVLTERGD------TGRTEAF-SLVRFSEPV 389 Query: 446 NIGDIIKVRIT 456 G+I +V IT Sbjct: 390 PAGEIREVAIT 400 >gi|307565341|ref|ZP_07627834.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella amnii CRIS 21A-A] gi|307346010|gb|EFN91354.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella amnii CRIS 21A-A] Length = 432 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 133/457 (29%), Positives = 206/457 (45%), Gaps = 55/457 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK----VYSFL 84 + GC N+ DS + F + G++ + D D ++ V+NTC E A E+ + F+ Sbjct: 10 TMGCSKNLVDSELLMKQFEANGFKCTHDSDKPDGEIAVINTCGFIETAKEESINTILEFV 69 Query: 85 GRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 R KE G L + V GC++Q EE+ + P V+ G Y +L L +A Sbjct: 70 NR---------KEKGQLNKLFVMGCLSQRYKEELKKEIPEVDKFYGKFNYKQLLTDLGKA 120 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYT 198 N R +T A++ I EGCD+ C +C +P Sbjct: 121 SV----------------------ASCNGVRHLTTPRHYAYIKIAEGCDRHCAYCAIPLI 158 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 G SR + V+ E +L+ GV E ++ Q + + G +DG K SDL+ +++IK Sbjct: 159 TGKHQSRKMEDVLQEVEQLVKEGVKEFQIIEQEL-TYYGVDIDG-KHHISDLISKIADIK 216 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ +R ++P L+ D + YL + Q SD +L M+R + E + Sbjct: 217 GVEWIRLHYAYPNQFPLSLLDVIADKPNVCKYLDIAFQHISDNMLNRMHRHVSKQETLSL 276 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I IRS P+I + + +VGFPGETD+DF D V + + + +F YS GT + Sbjct: 277 IKEIRSRVPNIHLRTTLLVGFPGETDEDFEELKDFVRQARFERMGAFSYSREEGTYSAEH 336 Query: 379 LE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SP 433 E V E VK +RL L ++ A VG +V+I++ KE VGR SP Sbjct: 337 YEDDVPEEVKMQRLNELMAIQQDISTEIERAKVGHTFKVIIDR--KEGDYYVGRTEFCSP 394 Query: 434 WLQSVVLNSKNHN---IGDIIKVRITDVKISTLYGEL 467 + VL + +G+ V IT LYGE+ Sbjct: 395 EVDPEVLIPMKEDTLRVGEFYNVYITSSDEFDLYGEI 431 >gi|75676959|ref|YP_319380.1| 2-methylthioadenine synthetase [Nitrobacter winogradskyi Nb-255] gi|74421829|gb|ABA06028.1| 2-methylthioadenine synthetase [Nitrobacter winogradskyi Nb-255] Length = 422 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 114/371 (30%), Positives = 174/371 (46%), Gaps = 34/371 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N ++S + + G E D++++N+C + +A + IR Sbjct: 5 VITFGCRLNAFESEVIRRNAEAAGLE--------DVVIVNSCAVTNEAVAQARQ---SIR 53 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR------------L 136 LK +R D +VV GC AQ E + + V+ V+G R Sbjct: 54 RLKRAR----PDARIVVTGCAAQIE-PAMFAQMAEVDRVIGNDEKMRGEAWRAARAAFAA 108 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 P++ A V D E + GG R AF+ +Q GCD CTFC++P Sbjct: 109 PDVTIAAEKKIAVADIMAVTEMAPHLVDGFQGGLPR-----AFVQVQNGCDHRCTFCIIP 163 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 + RG S + VVD+ R L + G EI L G ++ ++ G L G + L + Sbjct: 164 FGRGNSRSMPMDAVVDQVRVLTETGYAEIVLTGVDLTSY-GADLPGGPRLGGLVRQILRQ 222 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + + RLR ++ ++ L+ A + + LMP+LHL +QSG D ILK M RRH + Sbjct: 223 VPEMRRLRISSIDSIEVDRDLMDAIANEERLMPHLHLSLQSGDDMILKRMKRRHARRDAI 282 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++R +RPD A +D I GFP ETDD F ++DLV + F YS R GTP + Sbjct: 283 DFCAQVRRLRPDTAFGADIIAGFPTETDDMFARSLDLVAECDLTFLHVFPYSSRPGTPAA 342 Query: 377 NMLEQVDENVK 387 M E V+ Sbjct: 343 RMPPVAAEVVR 353 >gi|188996614|ref|YP_001930865.1| MiaB-like tRNA modifying enzyme YliG [Sulfurihydrogenibium sp. YO3AOP1] gi|238066611|sp|B2V8N8|RIMO_SULSY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|188931681|gb|ACD66311.1| MiaB-like tRNA modifying enzyme YliG [Sulfurihydrogenibium sp. YO3AOP1] Length = 430 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 122/449 (27%), Positives = 217/449 (48%), Gaps = 60/449 (13%) Query: 31 SYGCQMNVYDS------LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 S GC N+ D+ L E++ F+ E +AD+I++NTC E A E+ + Sbjct: 10 SLGCPKNLVDTEVLIGKLNQENISFTANPE------EADVILINTCGFIEPAKEESIETI 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--LER 142 L+ ++K+ + ++V GC+ + +E+ + P V+ + + ++P L ++ Sbjct: 64 -----LEAVKLKQNSNKKIIVTGCLVERYKQELEKEIPEVDYFIDLKNQSQIPVLFDIKP 118 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 KR++ T TA+L I EGCD C+FC +P RG Sbjct: 119 KENTKRIISTPKH---------------------TAYLKISEGCDHTCSFCAIPNIRGKH 157 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S+ + +V+EA+ L + GV E+ ++ Q+ ++ G L G+ F +LL L +I G+ Sbjct: 158 RSKPIEALVEEAKYLANLGVKELNIVSQDT-SYYGYDLYGKPMLF-ELLQHLEKIDGIKW 215 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R +P + + K + ++ Y+ +P+Q D+ILK M R + + QI++ Sbjct: 216 IRLYYLYPSTVDEDFFKFIKGSEKILHYIEMPIQHSEDKILKDMMRGYRKKKLYQILEWK 275 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQ 381 PD+ I S IVG+P ET++DF + + + + F YS GTP ++ Sbjct: 276 EKYTPDMTIRSSVIVGYPTETEEDFENMKNFIQEAQFDWLGVFVYSHEEGTPAYQKHKDK 335 Query: 382 VDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQS 437 + + K RL LQ+ + EQ+ N + +G+ ++++I+ +E L +GRS +S Sbjct: 336 IPKKEKIRRLNEISALQENITEQK---NKSLIGKELDIIIDGFSEEWETLPIGRS--YRS 390 Query: 438 V--------VLNSKNHNIGDIIKVRITDV 458 V ++ N+GDIIKVRI D Sbjct: 391 AFEIDGAVYVETTEPVNVGDIIKVRIKDT 419 >gi|189462612|ref|ZP_03011397.1| hypothetical protein BACCOP_03304 [Bacteroides coprocola DSM 17136] gi|189430773|gb|EDU99757.1| hypothetical protein BACCOP_03304 [Bacteroides coprocola DSM 17136] Length = 438 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 125/433 (28%), Positives = 207/433 (47%), Gaps = 29/433 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + M G V + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFAETSTIGKMLKEVGVRTVRKGEQADICVINTCSVTEMADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 KE +VV GC AQ + ++ V++V+G + L + L E+ G+ Sbjct: 73 ----AKEHPGAFIVVTGCYAQLKPGQVADIEG-VDLVLGAEQKGDLMKYLGNLEKHEHGE 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + + S D R R FL +Q+GCD FC++C +P+ RG + + Sbjct: 128 AITTATKDIRTFVPSCSRGD----RTR---YFLKVQDGCDYFCSYCTIPFARGRSRNGKI 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +V++AR++ G EI L G N+ + GK GE +F DL+ +L ++G+ R R ++ Sbjct: 181 ADLVEQARQVAAEGGKEIVLTGVNIGDF-GK-TTGE--SFFDLVKALDAVEGIERYRISS 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D +I+ MP+ H+P+QSG D +LK M RR+ + I +I+ + P Sbjct: 237 IEPNLLTDEIIEYVARSRRFMPHFHIPLQSGCDEVLKLMRRRYDTALFASKIHKIKFLMP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDE 384 D I D IVG GET + F + + + Q F YS R GT + + D+ Sbjct: 297 DAFIGVDVIVGTRGETPEYFEQAYEFIQGLDVTQLHVFSYSERPGTQALKIDYVVSPDDK 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +++RLL L E+ SF +GQ VL+E H K + G + V L + Sbjct: 357 YQRSQRLLVLSD---EKTRSFYARHIGQEATVLME-HSKPGCPMHGFTDNYIRVELEQND 412 Query: 445 HNIGDIIKVRITD 457 +I+VR+ D Sbjct: 413 ALDNQLIRVRLGD 425 >gi|240139472|ref|YP_002963947.1| MiaB-like tRNA modifying enzyme, putative 2-methylthioadenine synthetase [Methylobacterium extorquens AM1] gi|240009444|gb|ACS40670.1| MiaB-like tRNA modifying enzyme, putative 2-methylthioadenine synthetase [Methylobacterium extorquens AM1] Length = 410 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 129/435 (29%), Positives = 207/435 (47%), Gaps = 50/435 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N +S + +G+ ++ + DL+V+NTC + +A + + R+ Sbjct: 7 TFGCRLNTVESEVL------RGHAEPDA-EGRDLVVVNTCAVTAEAGRQARKAIRRL--- 56 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRS----PIVNVVVGPQTYYRLPELLERARFG 146 SR + G + +VV GC G E+ R S P V +VG R PE + G Sbjct: 57 --SRERPGAE--IVVTGC-----GAEVERASYAAMPEVARLVGNAAKLR-PESWQS---G 103 Query: 147 KRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 D E I G+ R AF+ +Q GCD CTFCV+P+ RG S Sbjct: 104 TAPAPEDIMAVRTAEPTHITTMSGHTR-----AFVPVQNGCDHRCTFCVIPFGRGNSRSV 158 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +++ V + R+++++G E+ L G ++ A+ G+ LD + + L+++ L RLR Sbjct: 159 PVAEAVAQVRRIVEHGGREVVLTGVDLTAY-GRDLDSDLSLGRLVRTILAKVPDLARLRL 217 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ + LI A + LMP++HL +Q+G D ILK M RRH+ + ++ +R + Sbjct: 218 SSIDSVEADAELIAAFAEEPRLMPHVHLSLQAGDDLILKRMKRRHSRADAIRLCQTLRDL 277 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RP + +D I GFP ET+ F ++DLV + G F YSPR TP + M + Sbjct: 278 RPGLVFGADLIAGFPTETEAQFARSLDLVAECGLTHLHVFPYSPRPDTPAARMPAVPGDV 337 Query: 386 VKAERLLCLQKKLREQQVS----FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V+A +LRE + D VG VL E+ GR+ S+V Sbjct: 338 VRAR-----AARLRETGAAALARHLDGEVGARRRVLTERGD------TGRTEAF-SLVRF 385 Query: 442 SKNHNIGDIIKVRIT 456 S+ GDI V +T Sbjct: 386 SEPVPAGDIRDVTVT 400 >gi|254521337|ref|ZP_05133392.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Stenotrophomonas sp. SKA14] gi|219718928|gb|EED37453.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Stenotrophomonas sp. SKA14] Length = 409 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 121/423 (28%), Positives = 200/423 (47%), Gaps = 49/423 (11%) Query: 64 LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123 ++V+NTC + A + +G N +N + V+V GC+ + E+I P Sbjct: 1 MVVVNTCGFIDSAVTESLDAIGEAMN-QNGK--------VIVTGCLGK-RPEQIREAYPN 50 Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183 V V GPQ Y + E + A K D F L + D G A+L I Sbjct: 51 VLAVSGPQDYQSVMEAVHEALPPKH---------DPFVDL-VPDYGIKLTPRHYAYLKIS 100 Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--------- 234 EGC+ C+FC++P RG +SR + +V+ EA +L+ GV E+ ++ Q+ +A Sbjct: 101 EGCNHKCSFCIIPSMRGKLVSRPVDEVLREAERLVRGGVRELLVVSQDTSAYGVDVKYAE 160 Query: 235 --WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292 WR K + +L LSE+ VR+ Y +P D ++ + + ++PYL Sbjct: 161 KMWRDKAY---QTRLKELCEGLSELDAWVRMHYVYPYPH--VDEVVPLMAE-NRILPYLD 214 Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 +P Q S RIL+ M R + + + R + PDI + S FIVGFPGET+ +F + Sbjct: 215 IPFQHASPRILRLMKRPGAVEKTLERVQNWRRIAPDITVRSTFIVGFPGETEAEFEELLS 274 Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412 +D+ + +F YSP G +++ + V E VK ERL +K + + +A +G Sbjct: 275 FLDEAQLDRVGAFAYSPVEGATANDLPDAVPEEVKQERLARFMEKQAQISAARLEAKIGT 334 Query: 413 IIEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHN-----IGDIIKVRITDVKISTL 463 + + L++ E V RS P + +V + +N + +G+ + V IT+ L Sbjct: 335 VQQCLVD--AIEGDIAVARSKADAPEIDGLV-HIQNADQVPLRVGEFVDVEITESDEHDL 391 Query: 464 YGE 466 YG+ Sbjct: 392 YGD 394 >gi|260654222|ref|ZP_05859712.1| RNA modification enzyme, MiaB-family [Jonquetella anthropi E3_33 E1] gi|260630855|gb|EEX49049.1| RNA modification enzyme, MiaB-family [Jonquetella anthropi E3_33 E1] Length = 431 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 124/450 (27%), Positives = 208/450 (46%), Gaps = 44/450 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N DS R+ + G+ + + DLI+LNTC + A E+ S + L Sbjct: 8 TLGCPKNEADSERLAGIMARAGFSLTDKSEGVDLILLNTCGFIQPAVEEGISTM-----L 62 Query: 91 KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 +K GD+ + V GC+ G+++ + P V+ + + L E + G Sbjct: 63 DMETMKARGDVKALAVVGCMVNRYGDDLKKEFPTVDYWARSEQWQELIESMGATYLG--- 119 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKR-GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 DG + R T +L I EGC+ C++C +P RG SR + Sbjct: 120 -----------------DGRHILTRTPWTRYLKISEGCNCQCSYCAIPGIRGRLCSRPID 162 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSE-IKGLVRLRYT 266 ++V EA +L+ G E+ L+GQ + + G D +K + LL L + + V LR Sbjct: 163 ELVQEAGRLVSEGAKELCLVGQELTEY---GADLYKKRSLPKLLTELEKTLPQSVWLRLF 219 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 HP + L++ ++P+L +P+Q +++L+ M R + R + R + Sbjct: 220 YLHPSHLDTALLEQIASSKQIVPWLDVPIQHIDNQVLERMARPPVETKIRSLFKIAREIN 279 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD A + +VGFPGET F +D V+ I + + +F YSP GT ++ +Q+ E+ Sbjct: 280 PDFAFRTTLMVGFPGETRRQFDRLLDFVEDIQFDRLGAFTYSPEDGTKAASFPDQIPEDE 339 Query: 387 KAER---LLCLQKKL-REQQVSFNDACVGQIIEVLIE---KHGKEKGKLVGRSPWLQ-SV 438 K R L+ LQ+ + R +Q F VG+ ++VL+E + G G+ +P + +V Sbjct: 340 KGRRYDELMSLQQSISRRRQALF----VGRRLDVLVEEVDQDGTRWGRSYRDAPEIDGAV 395 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 L+ GDI+ I D L+G V Sbjct: 396 ALSGSASQPGDIVSALIDDSSEYDLFGRPV 425 >gi|314918239|gb|EFS82070.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL050PA1] Length = 474 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 133/465 (28%), Positives = 209/465 (44%), Gaps = 56/465 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + + G+ V+ +A+ +V+NTC E+A + L +L Sbjct: 7 SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145 K + I VV GC+A+ G E+ P + V+G Y RL +L+ Sbjct: 67 KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122 Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179 +R + V+ R + G+ R+R G +A Sbjct: 123 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 182 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L + GCD+ C FC +P+ RG +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK Sbjct: 183 LKMASGCDRRCAFCAIPHFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL +L ++ GL +R + P ++ LI D ++PY L Q S Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 300 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+ M R A + IID IRS P+ + S+FI GFPGETD D D + + Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 360 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 A F YS GT + + VDE+V R RE D V Q E I Sbjct: 361 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 412 Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453 G+ ++GR+ P + V +++ ++GDI+ V Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVPLVDAAAVSVGDIVDV 457 >gi|314915477|gb|EFS79308.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL005PA4] gi|314920052|gb|EFS83883.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL050PA3] gi|314932066|gb|EFS95897.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL067PA1] gi|314955937|gb|EFT00337.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL027PA1] gi|314958142|gb|EFT02245.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL002PA1] gi|315101136|gb|EFT73112.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL046PA1] gi|327450811|gb|EGE97465.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL087PA3] gi|327453843|gb|EGF00498.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL083PA2] gi|328754231|gb|EGF67847.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL087PA1] gi|328754519|gb|EGF68135.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL025PA2] Length = 474 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 133/465 (28%), Positives = 209/465 (44%), Gaps = 56/465 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + + G+ V+ +A+ +V+NTC E+A + L +L Sbjct: 7 SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145 K + I VV GC+A+ G E+ P + V+G Y RL +L+ Sbjct: 67 KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122 Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179 +R + V+ R + G+ R+R G +A Sbjct: 123 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 182 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L + GCD+ C FC +P+ RG +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK Sbjct: 183 LKMASGCDRRCAFCAIPHFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL +L ++ GL +R + P ++ LI D ++PY L Q S Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 300 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+ M R A + IID IRS P+ + S+FI GFPGETD D D + + Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 360 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 A F YS GT + + VDE+V R RE D V Q E I Sbjct: 361 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 412 Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453 G+ ++GR+ P + V +++ ++GDI+ V Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457 >gi|146302669|ref|YP_001197260.1| MiaB-like tRNA modifying enzyme YliG [Flavobacterium johnsoniae UW101] gi|238065357|sp|A5FA30|RIMO_FLAJ1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|146157087|gb|ABQ07941.1| MiaB-like tRNA modifying enzyme YliG [Flavobacterium johnsoniae UW101] Length = 437 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 128/453 (28%), Positives = 223/453 (49%), Gaps = 45/453 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYE---RVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 V + GC NVYDS + + G E + D+ ++IV+NTC + A + + + Sbjct: 13 VITLGCSKNVYDSEVLMGQLRANGKEVTHEATAKDEGNIIVINTCGFIDNAKAESVNMIL 72 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + K+ + + V V GC+++ ++ + P V+ G LP+LL Sbjct: 73 EYADKKDKGLVDK----VFVTGCLSERYRPDLEKEIPNVDQYFGTT---ELPQLL----- 120 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + + DY E ERL+ Y A+L I EGCD+ C+FC +P RG +S+ Sbjct: 121 --KALGADYKHELLGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGSHVSQ 171 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 + ++V EA+ L NGV E+ L+ Q++ + GLD +K ++LL +L+ ++G+ +R Sbjct: 172 PIEKLVKEAQGLAKNGVKELILIAQDLTYY---GLDLYKKRNLAELLEALAAVEGIEWIR 228 Query: 265 ----YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 Y T P D+ + + + + Y+ +P+Q SD ILKSM R T + Q++ Sbjct: 229 LHYAYPTGFPMDVLELMKREPK----ICNYIDIPLQHISDSILKSMRRGTTQAKTTQLLK 284 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+ P +AI + IVG+PGET +DF + V ++ + + F YS T + + Sbjct: 285 DFRAAVPGMAIRTTLIVGYPGETQEDFEILKEFVQEMKFDRMGCFAYSHEENTHAYLLED 344 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436 V ++VK R + + + N VGQ+ +I++ KE VGR SP + Sbjct: 345 DVPDDVKQARANEIMELQSQISWDLNQEKVGQVFRCIIDR--KEGAHFVGRTEFDSPDVD 402 Query: 437 S-VVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 + V++++ H + G+ + ++I + LYGE Sbjct: 403 NEVLIDASKHYVKTGEFVNIKIIEATEFDLYGE 435 >gi|332527184|ref|ZP_08403257.1| ribosomal protein S12 methylthiotransferase [Rubrivivax benzoatilyticus JA2] gi|332111608|gb|EGJ11590.1| ribosomal protein S12 methylthiotransferase [Rubrivivax benzoatilyticus JA2] Length = 462 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 132/466 (28%), Positives = 211/466 (45%), Gaps = 48/466 (10%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 Q VP F S GC + DS + ++GY S ADL+++NTC + A ++ Sbjct: 2 QETVPTVAFA-SLGCPKALTDSELILTQLAAEGYRTSKSFAGADLVIVNTCGFIDDAVKE 60 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYR 135 +G + E G V+V GC+ G++ + + P V V GP Sbjct: 61 SLDTIGEA-------LAENGR--VIVTGCLGARAGDDGGNMVQQVHPKVLAVTGPHATQE 111 Query: 136 LPELLER--ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFC 193 + + + R + VD V +F + G A+L I EGC+ C+FC Sbjct: 112 VMDAVHRHVPKPHDPFVDLVPEVRAEFRG----EAGIKLTPRHYAYLKISEGCNHRCSFC 167 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KC 245 ++P RG +SR + +V+ EA+ L +NGV E+ ++ Q+ A+ R DG K Sbjct: 168 IIPTMRGDLVSRPVGEVLSEAKALFENGVKELLVVSQDTGAYGVDVQYRTGFWDGRPVKT 227 Query: 246 TFSDL---LYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301 F+DL L L+E G VRL Y +P + A G + +PYL +P Q Sbjct: 228 RFADLCEQLARLAEAHGAWVRLHYVYPYPHVDDVLPLMAEGRI---LPYLDVPFQHAHPD 284 Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361 +LK M R + + + R R + P++ + S FI GFPGET+ +F+ +D V + + Sbjct: 285 VLKRMKRPASGERNLERLARWRELCPELVVRSTFIAGFPGETEAEFQTLLDFVAEAQIDR 344 Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 A F YSP G P + + + + V+ ER + V+ VGQ ++VL++ H Sbjct: 345 AGCFAYSPVAGAPANELPGALPDAVREERRARFMEVAEAVSVAKLQRRVGQTMQVLVD-H 403 Query: 422 GKEKGKL--VGRS----PWLQSVVL------NSKNHNIGDIIKVRI 455 G+ VGRS P + V S+ +G+ ++ RI Sbjct: 404 APALGRKGGVGRSYADAPEIDGSVRLLPPQKASRTLKVGEFVRARI 449 >gi|85373609|ref|YP_457671.1| hypothetical protein ELI_03910 [Erythrobacter litoralis HTCC2594] gi|84786692|gb|ABC62874.1| hypothetical protein ELI_03910 [Erythrobacter litoralis HTCC2594] Length = 391 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 111/395 (28%), Positives = 183/395 (46%), Gaps = 45/395 (11%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S GC++N+ +S ++ + S+ D++V+N+C + +A + + + R Sbjct: 6 VISLGCRLNISESAQIRALLASED----------DVVVVNSCAVTSEAVRQTRQAIRKAR 55 Query: 89 NLK-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 + N+R+ +V GC A E ++ L P V+ +V A+ Sbjct: 56 KARPNARL--------LVTGCAADIERDQ-LAAMPEVDGLVA-----------NAAKLDP 95 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 R + + V + R AF+ +Q GCD CTFCV+P RG S S+ Sbjct: 96 RAWNVPAP-------QAPVTPQHTR-----AFVAVQNGCDHACTFCVIPQGRGKSQSLSI 143 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++V+ +D G E+ L G +V +W G L G S + L L RLR ++ Sbjct: 144 AEVLRTVEHHLDRGAAEVVLTGVDVTSW-GHDLPGSPALGSLVRAVLDAFPTLTRLRMSS 202 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++ + L +MP++HL +Q G D ILK M RRH+ + ++ R ++ RP Sbjct: 203 IDGIEVDETLFDLFAHEPRVMPHIHLSLQHGHDLILKRMKRRHSRADAFDLVFRFKAARP 262 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 +IAI +D I GFP ET++ A + ++ ++ F YSPR GTP + M QVD Sbjct: 263 EIAIGADLIAGFPTETEEHHAANLAIIRELDIVHGHIFPYSPRPGTPAARM-PQVDRPTI 321 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 R L+ + E + + A + Q VL E+ G Sbjct: 322 KRRAAELRAAVAEVRDPWLRAQLDQPHSVLAERDG 356 >gi|149045299|gb|EDL98385.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted), isoform CRA_b [Rattus norvegicus] Length = 442 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 110/377 (29%), Positives = 183/377 (48%), Gaps = 35/377 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 63 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 119 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ K VV+AGCV QA+ + + ++G Q R+ E++E Sbjct: 120 NSIKKAHEENKK------VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V E +RL + +D RK + ++I GC CT+C + RG Sbjct: 171 KGHSVRLLGQKKESG-KRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257 S + ++V+ A++ GVCEI L ++ A+ R G D LL+ L E+ Sbjct: 230 ASYPIDELVERAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 284 Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 G+ Y H +M+ L + + +LH+PVQS SD +L M R + Sbjct: 285 AMLRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDSVLMDMKREYCVA 339 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 ++++++D ++ P I I++D I GFPGETD DF+ T+ LV++ + F ++ PR GT Sbjct: 340 DFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGT 399 Query: 374 PGSNMLEQVDENVKAER 390 P + +QV +VK +R Sbjct: 400 PAAKA-KQVPAHVKKQR 415 >gi|258652985|ref|YP_003202141.1| MiaB-like tRNA modifying enzyme YliG [Nakamurella multipartita DSM 44233] gi|258556210|gb|ACV79152.1| MiaB-like tRNA modifying enzyme YliG [Nakamurella multipartita DSM 44233] Length = 485 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 123/436 (28%), Positives = 203/436 (46%), Gaps = 48/436 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERV-NSMDDADLIVLNTCHIREKAAEKVYSFL 84 R + + GC N DS + + GY+ V + + AD+IV+NTC + A + + Sbjct: 10 RVGLVTLGCARNDVDSSELAGRLQADGYQLVTDEAEPADVIVVNTCAFVDAAKKD---SI 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ K VV GC+A+ G E+ + P + V+G Y RL LL Sbjct: 67 DAVLAAADTGAK------VVAVGCMAERYGAELAQALPEADAVLGFDAYPRLGSLLGDVL 120 Query: 145 FGKRVVDTDYSVEDK--------FERLSIVDG----GYNR---------KRGVTAFLTIQ 183 G R ++ D+ R V G G+ G A L I Sbjct: 121 DGHR--PAAHTPVDRRTLLPISPVARAGAVSGVSVPGHAAGPVVPRTLLDEGPVAPLKIA 178 Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE 243 GCD+ CTFC +P RG +SR ++++ EA L+D GV E+ L+ +N ++ GK L G+ Sbjct: 179 SGCDRRCTFCAIPSFRGAFVSRPPAEILQEAAWLVDQGVREVVLVSENTTSY-GKDLPGD 237 Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 + +DLL L+++ GL R+R + P + LI+A ++ + Y + Q S +L Sbjct: 238 R-QLADLLAGLAQVPGLTRVRLSYLQPAETRPWLIQAIAEIPAVADYFDMSFQHSSPAVL 296 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL-----VDKIG 358 + M R + + Q++++IR PD I S+ IVGFPGET++D +D +G Sbjct: 297 RRMRRYGSTDSFLQLVEQIRVAAPDAGIRSNVIVGFPGETEEDLAELERFLVGARLDAVG 356 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 F YS GT + + DE+V AER+ + + + E + +G + V++ Sbjct: 357 V-----FGYSDEDGTEALGLAGKHDEDVIAERVERITELVEELSAQRAEDRIGSQLLVMV 411 Query: 419 EKHGKEK---GKLVGR 431 ++ + G VGR Sbjct: 412 DRAAGDPDGDGMAVGR 427 >gi|260432906|ref|ZP_05786877.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416734|gb|EEX09993.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] Length = 463 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 128/456 (28%), Positives = 208/456 (45%), Gaps = 44/456 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 33 SLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 89 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + E G V+V GC+ AE + I P + V GP Y ++ + + A V Sbjct: 90 ----LVENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHAA------V 136 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D + F L G R + +L I EGC+ C FC++P RG SR V Sbjct: 137 PPD---PNPFVDLLPASGVKLTPRHYS-YLKISEGCNHKCKFCIIPDMRGKLASRPAHAV 192 Query: 211 VDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA KL+D+GV E+ ++ Q+ VN W+ + + + +DL L ++ Sbjct: 193 LREAEKLVDSGVRELLVISQDTSAYGLDRKYDVNPWKDREV---RSHITDLARELGQMDA 249 Query: 260 LVRLRYTTSHP--RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 VRL Y +P R++ + A +L +PYL +P Q +LK M R A + Sbjct: 250 WVRLHYVYPYPHVRELIPLMADAGCNL---LPYLDIPFQHAHPDVLKRMARPAAAAKTLD 306 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 I R + PDI + S FIVG+PGET+ +F+ +D +D+ + FKY G ++ Sbjct: 307 EIAAWRDICPDITLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGCFKYENVDGARSND 366 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWL 435 + + V E VK ER +K + + A VGQIIEV+++ H + +P + Sbjct: 367 LPDHVPEEVKQERWERFMEKAQAISEAKLAAKVGQIIEVIVDDVDHEAATCRTKADAPEI 426 Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468 + ++ GDI+ V++ + L+G L+ Sbjct: 427 DGNLFIDDGFEDLKPGDIVAVQVDEAGEYDLWGRLL 462 >gi|209883419|ref|YP_002287276.1| hypothetical protein OCAR_4262 [Oligotropha carboxidovorans OM5] gi|209871615|gb|ACI91411.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5] Length = 420 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 121/397 (30%), Positives = 189/397 (47%), Gaps = 32/397 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N+ +S E M G +DDA +++NTC + +A + + R Sbjct: 7 TFGCRLNLAES---ETMRAEAGRA---GLDDA--VIVNTCAVTNEA-------VAQARQT 51 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +E ++V GC AQ E + P V+ V+G E + +R Sbjct: 52 IRRLRREAPRRRIIVTGCAAQTNAE-MFAAMPEVDRVLGNDDKMHA----EAWQATRRAF 106 Query: 151 DTD----YSVEDKFE----RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 D D +V D +VDG +N + AF+ +Q GCD CTFC++PY RG Sbjct: 107 DVDDGEKVAVADIMAVREMAPHLVDGFHNGQP--RAFVQVQNGCDHRCTFCIIPYGRGNS 164 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S ++ VD+ RKL++ G EI L G ++ ++ G L G + + L + L R Sbjct: 165 RSVAMGAAVDQVRKLVEGGCPEIVLTGVDITSY-GADLPGAPKLGTLVKQILKHVPELKR 223 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ + L+ D + LMP+LHL +Q+G D ILK M RRH + +++ Sbjct: 224 LRLSSIDSVEADHDLLDVIADNERLMPHLHLSLQAGDDLILKRMKRRHARADAVAFCEQV 283 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R +RPD+A +D I GFP ET+ F ++ LV+ F YS R GTP + M QV Sbjct: 284 RRLRPDVAFGADLIAGFPTETEVMFERSLALVEDCDLTFLHVFPYSKRPGTPAAKM-PQV 342 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 + ER L++ + +G+ EVLIE Sbjct: 343 EGRAIKERARLLREAGDAALKRRLASEIGKTREVLIE 379 >gi|45658385|ref|YP_002471.1| hypothetical protein LIC12543 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|81567903|sp|Q72PC8|RIMO_LEPIC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|45601628|gb|AAS71108.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 437 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 111/446 (24%), Positives = 213/446 (47%), Gaps = 26/446 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++ + GC N+ DS+ M +G+ + +++D +NTC + A E+ + Sbjct: 3 KKFYITTLGCPKNIADSMSMHHSLLEEGFTPASLPEESDFHFINTCTFIQSATEETIQTI 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 L +++K+ +VV GC A+ + I P V++ G Y + ++L R + Sbjct: 63 -----LSAAQVKKQNHQKLVVVGCFAERYPDNIHSEIPEVDLFFGTGKYSQAGKIL-REK 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 F + + ER + N + A++ + +GC++ C+FC++P RG Sbjct: 117 FPELSPSQLEFNDSLLERWKLSSKIENYSKPY-AYVKVSDGCNRGCSFCIIPSFRGKFAE 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 L ++ + + I G EI L+ Q+ + G D E D++ ++EI L LR Sbjct: 176 SPLDDILRDTNRAIRAGAKEICLVSQDTVYY---GRDSE--ILLDMVRKVAEIDSLEILR 230 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P ++ LI+ G+ + PYL P+Q S +ILK MNR + ++ + R Sbjct: 231 LLYLYPDKKTEKLIRLMGETSKIAPYLESPLQHVSSKILKVMNRTGESSYFKDLFSLARE 290 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 V+P + I + FI+G+PGE +D + ++ + F YSP+ GT G+ + + V E Sbjct: 291 VKPGLEIRTSFIIGYPGEEPEDVDQILRFIEDTRPEKVNLFSYSPQEGTKGAQLKQTVSE 350 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440 K++R+ ++ E +++ +G+ + +++ G E G+ V R +P + VV Sbjct: 351 KEKSKRINLIRDSHLEILEEIHESRIGRTYDAIVD--GIEDGQAVVRRFQDAPEMDEVVY 408 Query: 441 NSKNHNIGDI--IKVRITDVKISTLY 464 + D+ + RI V+I + Y Sbjct: 409 ------VDDVSLLPGRIGKVRIDSFY 428 >gi|315637089|ref|ZP_07892312.1| 2-methylthioadenine synthetase [Arcobacter butzleri JV22] gi|315478625|gb|EFU69335.1| 2-methylthioadenine synthetase [Arcobacter butzleri JV22] Length = 422 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 118/437 (27%), Positives = 216/437 (49%), Gaps = 32/437 (7%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ +F K++GC+ NV+D+ M M + +E ++A+++V+N+C + A ++ Sbjct: 8 PKVYF-KTFGCRTNVFDTQVM--MSNLKDFEVTLDENEANIVVINSCTVTNSADSTARTY 64 Query: 84 LGRIRNL-KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + ++ L KN R V+ GC +GE + + + + ++ Q LL Sbjct: 65 INSLKKLPKNPR--------VIFTGCGVWTKGETLFKENKVDSLFGHSQKENINDLLLNE 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 RF + D + DK +IV+ + R AF+ IQEGCD C++C++PY RG Sbjct: 117 ERFFEA---GDLTHIDK----TIVEEFVGKSR---AFIKIQEGCDFRCSYCIIPYVRGDA 166 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S S +++++ L NG E L G NV ++ K + + + LL +S IKG+ R Sbjct: 167 RSYSEDKILEQVTTLAANGFGEFILTGTNVGSYGKK----QHTSLAKLLKKMSLIKGVRR 222 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R + P + D K + + +LH+ +Q S +LK MNRR+ ++ + + Sbjct: 223 IRMGSIEPIQIDDEF-KEIINEPFMAKHLHIALQHTSKEMLKIMNRRNKVLSDLELFEFL 281 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R A+ +DFIVG PGET+ ++ M+ + + +F YS R GTP + M Q+ Sbjct: 282 R--ENGYALGTDFIVGHPGETEALWKEAMENLHRFPLTHVHAFTYSKRDGTPSATMKPQI 339 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 ++ R L + ++ +F + +EVL+E+ ++ GK +G + + ++S Sbjct: 340 KGDIAKVRYNELINIIEQKNYNFRKEN-KKTLEVLVEQ--EKNGKYIGLDQFFNQIEIDS 396 Query: 443 KNHNIGDIIKVRITDVK 459 +GD + + +VK Sbjct: 397 TADLVGDWVYINDYEVK 413 >gi|291519254|emb|CBK74475.1| RNA modification enzyme, MiaB family [Butyrivibrio fibrisolvens 16/4] Length = 382 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 107/363 (29%), Positives = 191/363 (52%), Gaps = 27/363 (7%) Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGKRVVDTDYSVED--- 158 VV AGC Q G+E+ ++++G + EL+E+ ++ + + +D + D Sbjct: 14 VVAAGCYVQNFGKEVADELG-ADIILGNN---KKNELVEKIHQYFEGLDSSDGPILDWID 69 Query: 159 ------KFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVV 211 +E + I D + R AF+ +Q+GC++FC++C++P+ RG SR + VV Sbjct: 70 INEGNVSYENMHIEKDSEHTR-----AFVKVQDGCNQFCSYCIIPFARGRIRSRDIEDVV 124 Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271 +E L NG E+ + G +++++ G G D +DLL ++ +I G+ R+R + P+ Sbjct: 125 EEVTGLATNGYKEVVITGIHLSSY-GNGTD---YNLADLLEAIEKIDGVERIRLGSLEPQ 180 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 +++ K L + P+ HL +QSG D +L MNR++T EY + ++ +R + AI Sbjct: 181 IVTEEFAKRVSALSKMCPHFHLSLQSGCDSVLVRMNRKYTIEEYTRGVEILRKYFENPAI 240 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391 ++D IVGFPGET+++F T V I + + F YS R GT + M Q+ VK ER Sbjct: 241 TTDIIVGFPGETEEEFNITASYVKDIAFYELHVFAYSKRKGTKAATMPGQLTNAVKKERS 300 Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK--LVGRS-PWLQSVVLNSKNHNIG 448 L E S+ + VG+ +++L E+ GK +G S +++ +L + + Sbjct: 301 AKLISIGNETTESYRMSFVGKELDILFEEKAVIDGKEYFIGFSREYIKCAILAEDSKDFT 360 Query: 449 DII 451 ++I Sbjct: 361 NVI 363 >gi|300703948|ref|YP_003745550.1| 2-methylthioadenine synthetase [Ralstonia solanacearum CFBP2957] gi|299071611|emb|CBJ42935.1| putative 2-methylthioadenine synthetase [Ralstonia solanacearum CFBP2957] Length = 459 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 135/477 (28%), Positives = 223/477 (46%), Gaps = 65/477 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + ADL+V+NTC ++A ++ Sbjct: 15 PRVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G +I+ P V V GP + L E+ Sbjct: 74 IGEA-------LAENGK--VIVTGCLGAKKDATGNDIITSVHPKVLAVTGP---HALGEV 121 Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 +E V T D F L + G A+L I EGC+ C+FC++P Sbjct: 122 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 173 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR +++V+ EA L+ GV E+ ++ Q+ +A W G+ L K Sbjct: 174 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPL---KTRM 230 Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 ++L+ +L E+ VRL Y +P + A G + +PYL +P+Q +L Sbjct: 231 TELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHSEVL 287 Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 K M R A + +DRIR+ R P++ I S FI GFPGET+++F+ +D + + Sbjct: 288 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIGEAELD 344 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + F YSP G +++ + + V+ ER + VG+ + VL+++ Sbjct: 345 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLVDE 404 Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467 ++ G +GRS P + +V + K + GD + V+IT L+GE+ Sbjct: 405 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKTGDFVSVKITGADGHDLWGEV 459 >gi|313764484|gb|EFS35848.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL013PA1] Length = 474 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 133/465 (28%), Positives = 209/465 (44%), Gaps = 56/465 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + + G+ V+ +A+ +V+NTC E+A + L +L Sbjct: 7 SMGCARNDVDSEELAARMEAGGFRFVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145 K + I VV GC+A+ G E+ P + V+G Y RL +L+ Sbjct: 67 KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122 Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179 +R + V+ R + G+ R+R G +A Sbjct: 123 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 182 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L + GCD+ C FC +P+ RG +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK Sbjct: 183 LKMASGCDRRCAFCAIPHFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL +L ++ GL +R + P ++ LI D ++PY L Q S Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 300 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+ M R A + IID IRS P+ + S+FI GFPGETD D D + + Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 360 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 A F YS GT + + VDE+V R RE D V Q E I Sbjct: 361 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 412 Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453 G+ ++GR+ P + V +++ ++GDI+ V Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457 >gi|329295563|ref|ZP_08252899.1| ribosomal protein S12 methylthiotransferase [Plautia stali symbiont] Length = 345 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 111/365 (30%), Positives = 177/365 (48%), Gaps = 44/365 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P R S GC N+ DS R+ ++GY+ V DDA+++++NTC + A ++ Sbjct: 7 PPRVGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDAEIVIINTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ A+ ++I P V + GP +Y Sbjct: 67 IGEALN-------ENGK--VIVTGCLG-AKVDQIREVHPKVLEITGPHSY---------- 106 Query: 144 RFGKRVVDTDYSVEDKFER---LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 ++V+ ++ K E LS+V + G A+L I EGC+ CTFC++P R Sbjct: 107 ---EQVLSHVHTYVPKPEHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMR 163 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFS 248 G SR + V+DEA++L++ GV E+ ++ + +A W G + K + Sbjct: 164 GDLDSRPIDAVLDEAKRLVEAGVKELLVISLDTSAYGVDVKHRTGFWNGSPV---KTSMV 220 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 L L+++ VRL Y +P + A G + +PY +P+Q S RILK M R Sbjct: 221 SLCEQLAKLGVWVRLHYVYPYPHVDDVIPLMAEGKI---LPYFDIPLQHASPRILKLMKR 277 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 T + I R R + P++ + S FIVGFPGET++DF+ +D + + F+YS Sbjct: 278 PGTVERTLERIKRWREICPELTLRSTFIVGFPGETEEDFQMLLDFLREARLDLVGCFQYS 337 Query: 369 PRLGT 373 P G Sbjct: 338 PVEGA 342 >gi|296282867|ref|ZP_06860865.1| ribosomal protein S12 methylthiotransferase [Citromicrobium bathyomarinum JL354] Length = 461 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 124/470 (26%), Positives = 213/470 (45%), Gaps = 51/470 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P++ + S GC + DS R+ + GY AD++++NTC + A E+ Sbjct: 11 PKKVGMVSLGCPKALVDSERILTRLRADGYAMSADYAGADIVLVNTCGFLDSAKEESLQA 70 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G I E G V+V GC+ + E + I P V V G Y ++ E + Sbjct: 71 IGEA-------IAENG--RVIVTGCMGE-EADAIRAAHPQVLAVTGAHQYEQVVEAVHEH 120 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + D + + + Y+ +L I EGC+ C FC++P RG Sbjct: 121 APPSQGPYIDLIPQPDLADIKLTPRHYS-------YLKISEGCNHSCAFCIIPDLRGKLA 173 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLY 252 SR + V+ EA KL+ G E+ ++ Q+ +A W+G+ + + +DL Sbjct: 174 SRRIDAVLREAEKLVAAGTKELLVISQDTSAYGVDTRHDAREWKGREV---RAHMTDLAR 230 Query: 253 SLSEIK------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 L +++ VRL Y +P + A G +L PYL +P Q + +LK M Sbjct: 231 ELGQLRTDQGRPPWVRLHYVYPYPHVDQVIPLMAEG---LLTPYLDIPFQHAAPSVLKRM 287 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + + + R + PDIA+ S F+VGFPGET++DF+ +D +++ + +F+ Sbjct: 288 KRPANEAKVLERLKGWREICPDIAVRSSFVVGFPGETEEDFQYLLDWLEEAQLDRVGAFR 347 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--E 424 + P G + + + V E VK ER + + + A +G+ + V+I++ G+ E Sbjct: 348 FEPVEGAAANALPDPVPEAVKEERYARIMEATARISAAKLQAKIGRTLPVIIDEVGEPDE 407 Query: 425 KGKL--VGRS----PWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465 G + GRS P + V S + GDI++V++ D L+G Sbjct: 408 DGDIGATGRSQADAPEIDGNVFLRNVSASLAPGDIVEVQVEDADEHDLFG 457 >gi|193213382|ref|YP_001999335.1| MiaB-like tRNA modifying enzyme [Chlorobaculum parvum NCIB 8327] gi|193086859|gb|ACF12135.1| MiaB-like tRNA modifying enzyme [Chlorobaculum parvum NCIB 8327] Length = 456 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 123/410 (30%), Positives = 205/410 (50%), Gaps = 28/410 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + DM ++G++ + D AD+I+++TC + +A K R Sbjct: 16 TLGCKVNYAETASIVDMLVAEGWQFHDIRDGADIILIHTCAVTGEAERKS-------RQQ 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 IK+ + VVVAGC AQ E I + V++V+G + LE +R V Sbjct: 69 IRKAIKKHPNAKVVVAGCYAQLAPEHIAQIDG-VSLVLGMAEKFDRSHYLEEPDRKERNV 127 Query: 151 DTDYS-VEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 S VE ++G T AFL IQ+GC C +C +P RG S L+ Sbjct: 128 RVRVSPVEASSAAHVASSLIRQPEKGRTRAFLKIQDGCSFGCAYCAIPLARGRSRSVPLA 187 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V++ A + + G EI L G N+ + DG+ F+DLL L E+ + R+R ++ Sbjct: 188 TVMERAAAIAEAGYREIVLTGINIADYH----DGQH-GFTDLLRHLEELD-VSRIRISSI 241 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P+ + D LI+ +MP+ HLP+QSGSD++LK+M R++ YR+ + R S Sbjct: 242 EPQFLDDELIELVAGSTKIMPHFHLPLQSGSDKVLKAMGRQYDTALYRERLLRAVSSIRG 301 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ------- 381 AI +D +VG+PGE++ DF ++++ A F S R GT S + + Sbjct: 302 CAIGADVMVGYPGESEQDFETMYRFIEELPVAYLHVFSCSVRPGTRLSREIAEKRVSRVV 361 Query: 382 -VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLV 429 + + +A RL L ++L + F + +G+ + VL E+ G + GK++ Sbjct: 362 SAEASRRATRLAQLGQQLERR---FASSFIGRQVRVLFEEGGADADGKML 408 >gi|27375587|ref|NP_767116.1| hypothetical protein bll0476 [Bradyrhizobium japonicum USDA 110] gi|27348724|dbj|BAC45741.1| bll0476 [Bradyrhizobium japonicum USDA 110] Length = 417 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 126/405 (31%), Positives = 188/405 (46%), Gaps = 40/405 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N +++ + G D IV+N+C + +A + IR L Sbjct: 7 TFGCRLNAFEAEVIRSKAEGAGL--------VDTIVINSCAVTNEAVAQARQ---SIRKL 55 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR----FG 146 K R +VV GC AQ + + V+ VVG R + AR G Sbjct: 56 KRER----PGARIVVTGCAAQTQ-SRMFADMAEVDRVVGNDDKMR-SDAWREARDAFDIG 109 Query: 147 KR---VVDTDYSVEDKFERLSIVDG---GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R V +V++ L VDG G R F+ +Q GCD CTFC++P+ RG Sbjct: 110 AREKIAVSDIMAVKEMAPHL--VDGFASGLPR-----VFVQVQNGCDHRCTFCIIPFGRG 162 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S + VV++ R L + G EI L G ++ ++ G L G L + L Sbjct: 163 NSRSVPMGAVVEQVRALAERGHAEIVLTGVDLTSY-GADLPGAPKLGMLTKQILRHVPEL 221 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ + + L+ A D LMP+LHL +QSG D ILK M RRH + D Sbjct: 222 KRLRISSIDSIEADNDLLDAIADDARLMPHLHLSLQSGDDMILKRMKRRHLRGDAIAFCD 281 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R +RPD+A +D I GFP ET+ F ++DLV++ G F YSPR GTP + M + Sbjct: 282 QVRRLRPDVAFGADIIAGFPTETEAMFSRSLDLVEECGLTFLHVFPYSPRPGTPAARMPQ 341 Query: 381 QVDENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 +K A RL + Q++ A +G +VLIE + Sbjct: 342 VAGPEIKERARRLRAAGEAALRQRLQ---AEIGATRDVLIESESQ 383 >gi|187928991|ref|YP_001899478.1| ribosomal protein S12 methylthiotransferase [Ralstonia pickettii 12J] gi|238066577|sp|B2UFU5|RIMO_RALPJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|187725881|gb|ACD27046.1| MiaB-like tRNA modifying enzyme YliG [Ralstonia pickettii 12J] Length = 453 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 135/477 (28%), Positives = 224/477 (46%), Gaps = 65/477 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + ADL+V+NTC ++A ++ Sbjct: 9 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 67 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G++I+ P V V GP + L E+ Sbjct: 68 IGEA-------LAENGK--VIVTGCLGAKKDASGQDIITSVHPKVLAVTGP---HALGEV 115 Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 +E V T D F L + G A+L I EGC+ C+FC++P Sbjct: 116 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 167 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR +++V+ EA L+ GV E+ ++ Q+ +A W G+ L K Sbjct: 168 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRMGFWNGRPL---KTRM 224 Query: 248 SDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 ++L+ +L E+ VRL Y +P + A G + +PYL +P+Q +L Sbjct: 225 TELVGALGELASQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPDVL 281 Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 K M R A + +DRIR+ R P++ I S FI GFPGET+++F+ +D + + Sbjct: 282 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIAEAELD 338 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + F YSP G +++ + + V+ ER + VG+ + VL+++ Sbjct: 339 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARGLQRKVGKSLRVLVDE 398 Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467 ++ G +GRS P + +V + K + GD + V+IT L+GE+ Sbjct: 399 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKAGDFVSVKITGADGHDLWGEV 453 >gi|170751706|ref|YP_001757966.1| MiaB-like tRNA modifying enzyme [Methylobacterium radiotolerans JCM 2831] gi|170658228|gb|ACB27283.1| MiaB-like tRNA modifying enzyme [Methylobacterium radiotolerans JCM 2831] Length = 408 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 129/412 (31%), Positives = 196/412 (47%), Gaps = 37/412 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-DLIVLNTCHIREKAAEKVYSFLGRIRN 89 ++GC++N +S + RV++ D D +V+NTC + +A + + R+ Sbjct: 7 TFGCRLNTVESEAL----------RVHAAADGRDRVVVNTCAVTAEAGRQARKAIRRL-- 54 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 +R + G + +VV GC A+ E E P V +VG R PE A G Sbjct: 55 ---ARERPGAE--IVVTGCGAEVE-TEAYAAMPEVARLVGNAEKLR-PEGWSAAATGPGA 107 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 V + E R+ V G+ R AF+ +Q GCD CTFCV+P+ RG+ S + Sbjct: 108 VMAARAAEPT--RVEAV-AGHTR-----AFVPVQNGCDHRCTFCVIPFGRGVSRSVPEAD 159 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRYTTS 268 V+ + ++ G E+ L G ++ A+ G+ L G + L + L + L RLR ++ Sbjct: 160 VIAQVETIVARGGREVVLTGVDLTAY-GRDLPGTAPSLGGLARAILRAVPDLARLRLSSI 218 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 + D L+ A + + LMP+LHL +Q+G D ILK M RRH + + + +R +RPD Sbjct: 219 DSVEADDALLAAIAEEERLMPHLHLSLQAGDDLILKRMRRRHLRADAIRFCETVRRLRPD 278 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +D I GFP ET+ F ++DLV G F YSPR GTP + M V Sbjct: 279 TVFGADLIAGFPTETEAQFDRSLDLVAACGLTHLHVFPYSPRPGTPAARM-PPVAPEAIR 337 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 R L+ + DA VG+ + VL E+ G VGRS +V L Sbjct: 338 ARAARLRAAGADALRRHLDAQVGRRLTVLAERGG------VGRSADFTAVRL 383 >gi|189347087|ref|YP_001943616.1| MiaB-like tRNA modifying enzyme YliG [Chlorobium limicola DSM 245] gi|238065321|sp|B3EDL2|RIMO_CHLL2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|189341234|gb|ACD90637.1| MiaB-like tRNA modifying enzyme YliG [Chlorobium limicola DSM 245] Length = 429 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 127/452 (28%), Positives = 223/452 (49%), Gaps = 41/452 (9%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGR 86 F+ S GC N DS R+ + G DDAD+I++NTC I++ E + L Sbjct: 5 FLLSLGCSKNTVDSERLMAQAAASGMIFTEFADDADIILINTCGFIQDAKEESIAETLAA 64 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 IR ++ ++++ V V GC+ + +E+ P ++ G + LP++L Sbjct: 65 IRKKQDEKVRK-----VYVMGCLPELYRKELADEMPEIDGFFGTR---ELPDVL------ 110 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 R + +Y E R+ + Y AFL I EGC++ C+FC +P RG +S+ Sbjct: 111 -RAIGAEYREELLDRRILLTPPHY-------AFLKIAEGCNRQCSFCSIPKIRGRYVSQP 162 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 Q++ EA L +GV E+ L+ Q+++ + G LDG +DL+ LS+++ R+R Sbjct: 163 PEQLLREAALLRQSGVRELNLIAQDISVY-GCDLDG-SSLLNDLVLRLSDME-FERIRLL 219 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P + +I + + + YL +P+Q SDRIL+SMNR + ++I+ IR Sbjct: 220 YAYPLNFPMEVIDTMRERENVCNYLDMPLQHISDRILRSMNRGIDSTGTVRLIESIRQRN 279 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDI + + I G+PGET ++F + V + + + F YS +P + + V Sbjct: 280 PDIRLRTTMIAGYPGETGEEFEELLQFVAETRFDRLGCFPYSHEEHSPAYRLEDDVIPEK 339 Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW-----LQSV 438 K +R L+ LQ+ + +++ N G I VL+++ E+ + GR+ + Sbjct: 340 KQDRVAELMELQETISQEK---NREFEGNEIVVLVDQ--VEENMVFGRTEYDAPEVDNEC 394 Query: 439 VLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +L + N ++ G + RITD L GE++ Sbjct: 395 ILETGNFDVRPGMFCRARITDSTPYDLEGEVI 426 >gi|289427177|ref|ZP_06428893.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium acnes J165] gi|289159646|gb|EFD07834.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium acnes J165] Length = 481 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 133/465 (28%), Positives = 208/465 (44%), Gaps = 56/465 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + + G+ V+ +A+ +V+NTC E+A + L +L Sbjct: 14 SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145 K + I VV GC+A+ G E+ P + V+G Y RL +L+ Sbjct: 74 KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDDGSLE 129 Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179 +R + V+ R + G+ R+R G +A Sbjct: 130 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 189 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L + GCD+ C FC +P RG +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK Sbjct: 190 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 248 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL +L ++ GL +R + P ++ LI D ++PY L Q S Sbjct: 249 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 307 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+ M R A + IID IRS P+ + S+FI GFPGETD D D + + Sbjct: 308 GPLLRRMRRFGDAESFLNIIDSIRSCCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 367 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 A F YS GT + + VDE+V R RE D V Q E I Sbjct: 368 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 419 Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453 G+ ++GR+ P + V +++ ++GDI+ V Sbjct: 420 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 464 >gi|256370700|ref|YP_003108525.1| putative MiaB-like protein [Candidatus Sulcia muelleri SMDSEM] gi|256009492|gb|ACU52852.1| putative MiaB-like protein [Candidatus Sulcia muelleri SMDSEM] Length = 435 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 101/375 (26%), Positives = 194/375 (51%), Gaps = 16/375 (4%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N ++ + + F +GYE V + AD+ ++NTC + A +K ++ L Sbjct: 12 GCKLNFTETDTIINKFLIKGYEYVKYISFADIYIINTCSVTNNAEKK-------LKKLVK 64 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 +K + +V GC +Q ++I + I ++++G + +++ LE K+ Sbjct: 65 IALKNNVNAFIVAIGCYSQVNPKKISLINGI-DLIIGAKKKFKIINYLENLS-KKKTAKI 122 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 YS ++ + Y++ +FL IQ+GCD C++C +P RG S ++ ++ Sbjct: 123 YYS---DIKKSDLYFPSYSKLNRTRSFLKIQDGCDYKCSYCTIPKARGTSKSDDITNIIK 179 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRLRYTTSHP 270 A+ +I G+ EI L G N+ + GK L K F +L+ ++ K ++R+R ++ P Sbjct: 180 YAKNVIKKGIKEIVLTGVNIGDF-GKNLK-PKSNFLELMKAMDSFFYKKIIRIRISSIEP 237 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D LI + + + H+P+QSGSD IL M RR+++ + + I +I+++ P+ Sbjct: 238 NLLNDDLINFILKSKIFVHHFHIPLQSGSDEILNKMKRRYSSNFFEKKIIQIKNLMPNAC 297 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I SD IVGFPGE + +F T + K+ + F YS R+ T +M + + ++ +R Sbjct: 298 IGSDVIVGFPGEQEKNFIETYLFLSKLDISYFHVFSYSERINTEAISMKNSIPQKIRYKR 357 Query: 391 LLCLQKKLREQQVSF 405 L+ + ++ +F Sbjct: 358 SKILRILSKRKKYNF 372 >gi|170028512|ref|XP_001842139.1| aq_284 [Culex quinquefasciatus] gi|167876261|gb|EDS39644.1| aq_284 [Culex quinquefasciatus] Length = 555 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 128/470 (27%), Positives = 211/470 (44%), Gaps = 53/470 (11%) Query: 20 QCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 + ++P QR ++K++GC N DS M S GY DA+L +LN+C ++ + Sbjct: 60 ESVIPGTQRIYLKTWGCAHNSSDSEYMAGQLASYGYNITTDKTDANLWLLNSCTVKNPSE 119 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRL 136 + RN + K G VV+AGCV QA + E + IV V Q R+ Sbjct: 120 DT-------FRNEILAAEKMGKH--VVLAGCVPQAAPKSEYMHGLSIVGV----QQLDRV 166 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDG----GYN------RKRGVTAFLTIQEGC 186 E++E G V + + V+G G N RK + + I GC Sbjct: 167 TEVVEETLKGHSV---------RLLQPKKVNGKKVAGPNLALPKVRKNPLIEIIPINSGC 217 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246 CT+C + R IS + ++++ A ++ GVCEI L ++ + G+ + + Sbjct: 218 LNTCTYCKTKFARADLISYPVEEIIERATQVFQEGVCEIWLTSEDTGTY-GRDIGS---S 273 Query: 247 FSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 +LL+ L E+ G+ Y H +M+ L AH + +LH+PVQSG Sbjct: 274 LPELLWKLVEVIPDNCRLRLGMTNPPYILEHLDEMAKIL--AHPKV---YGFLHVPVQSG 328 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 SD +L M R + ++ +I D ++ P I I++D I GFP ET+ DF TM L K Sbjct: 329 SDSVLGEMKREYCRADFERICDFLKQKVPGITIATDIICGFPTETEADFEHTMSLCAKYE 388 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F ++ PR GTP + M + VK R L + +G VL+ Sbjct: 389 FPSLFINQFYPRPGTPAAKMQRIPPDQVKT-RTKRLTDLFYGYEPYAKKYTIGDRQTVLV 447 Query: 419 EKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +K VG + + + ++L +G +++VRI + ++ E+ Sbjct: 448 TEISHDKKHYVGHNKFYEQILLPMDKPLLGKLVEVRIAKITKFSMIAEIA 497 >gi|241663178|ref|YP_002981538.1| ribosomal protein S12 methylthiotransferase [Ralstonia pickettii 12D] gi|240865205|gb|ACS62866.1| MiaB-like tRNA modifying enzyme YliG [Ralstonia pickettii 12D] Length = 453 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 135/477 (28%), Positives = 224/477 (46%), Gaps = 65/477 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + ADL+V+NTC ++A ++ Sbjct: 9 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 67 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G++I+ P V V GP + L E+ Sbjct: 68 IGEA-------LAENGK--VIVTGCLGAKKDAAGQDIITSVHPKVLAVTGP---HALGEV 115 Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 +E V T D F L + G A+L I EGC+ C+FC++P Sbjct: 116 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 167 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR +++V+ EA L+ GV E+ ++ Q+ +A W G+ L K Sbjct: 168 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRMGFWNGRPL---KTRM 224 Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 ++L+ +L E+ VRL Y +P + A G + +PYL +P+Q +L Sbjct: 225 TELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPDVL 281 Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 K M R A + +DRIR+ R P++ I S FI GFPGET+++F+ +D + + Sbjct: 282 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIAEAELD 338 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + F YSP G +++ + + V+ ER + VG+ + VL+++ Sbjct: 339 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKSLRVLVDE 398 Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467 ++ G +GRS P + +V + K + GD + V+IT L+GE+ Sbjct: 399 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKAGDFVSVKITGADGHDLWGEV 453 >gi|218961820|ref|YP_001741595.1| putative MiaB-like tRNA modifying enzyme [Candidatus Cloacamonas acidaminovorans] gi|167730477|emb|CAO81389.1| putative MiaB-like tRNA modifying enzyme [Candidatus Cloacamonas acidaminovorans] Length = 422 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 122/438 (27%), Positives = 206/438 (47%), Gaps = 27/438 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + + GC+ N +S + D F ++ V ++AD+ ++NTC + + K + Sbjct: 3 RIAIATLGCKANQAESSIILDQF--NDFKLVPWQEEADIYIINTCTVTNRTDYKSRYLIR 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + + K + +VV GC AQ EEI + V+ ++ Q + ++L + Sbjct: 61 QALSQKT----QNPFAKIVVTGCFAQRYPEEIAKMGN-VDWIIDNQQKLNIADILAGGNY 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +D + E ++ + + YNR R AF IQ+GCD C +C VPY RG S Sbjct: 116 --EFMDIMQAKEFVYKPTAKM---YNRTR---AFQIIQDGCDFNCAYCAVPYGRGRSRSA 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +L QV+ +A+ ++NG EI L G N+ ++ D +D+L L+E++GL +R Sbjct: 168 TLEQVIQQAKLFVENGYKEIVLSGINLGLYKDGNND-----LTDVLLRLNELQGLELIRL 222 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ P+ +D LI + L + H+P+Q G+D LK M R +T+ Q+I +I Sbjct: 223 SSVEPQLFNDKLINTLPLIPKLCSHYHIPLQCGADSGLKRMRRHYTSTTINQLIVKICER 282 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P AI D I GFPGET+++ T + + + A F +S R GTP + Q+ + Sbjct: 283 IPYPAIGMDVITGFPGETEEEHNQTCEFLRSLPLAYLHIFTFSKRKGTPAFDFPNQISKT 342 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN---S 442 +K R L + RE A ++E I G + G +L + S Sbjct: 343 IKNRRANELSQISRE----LTSAYTKSLMENNIPLRGIVEKNTAGYCEFLSDHYVRVRFS 398 Query: 443 KNHNIGDIIKVRITDVKI 460 N GD ++V + +I Sbjct: 399 GNFQPGDFVQVPSQEAQI 416 >gi|309782622|ref|ZP_07677344.1| Fe-S oxidoreductase family 1 [Ralstonia sp. 5_7_47FAA] gi|308918597|gb|EFP64272.1| Fe-S oxidoreductase family 1 [Ralstonia sp. 5_7_47FAA] Length = 453 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 135/477 (28%), Positives = 224/477 (46%), Gaps = 65/477 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + ADL+V+NTC ++A ++ Sbjct: 9 PKVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 67 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G++I+ P V V GP + L E+ Sbjct: 68 IGEA-------LAENGK--VIVTGCLGAKKDAAGQDIITSVHPKVLAVTGP---HALGEV 115 Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 +E V T D F L + G A+L I EGC+ C+FC++P Sbjct: 116 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 167 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR +++V+ EA L+ GV E+ ++ Q+ +A W G+ L K Sbjct: 168 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRMGFWNGRPL---KTRM 224 Query: 248 SDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 ++L+ +L E+ VRL Y +P + A G + +PYL +P+Q +L Sbjct: 225 TELVGALGELASQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPDVL 281 Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 K M R A + +DRIR+ R P++ I S FI GFPGET+++F+ +D + + Sbjct: 282 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIAEAELD 338 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + F YSP G +++ + + V+ ER + VG+ + VL+++ Sbjct: 339 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKSLRVLVDE 398 Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467 ++ G +GRS P + +V + K + GD + V+IT L+GE+ Sbjct: 399 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKAGDFVSVKITGADGHDLWGEV 453 >gi|303232268|ref|ZP_07318967.1| MiaB-like protein [Atopobium vaginae PB189-T1-4] gi|302481678|gb|EFL44739.1| MiaB-like protein [Atopobium vaginae PB189-T1-4] Length = 449 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 114/412 (27%), Positives = 189/412 (45%), Gaps = 38/412 (9%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYER----VNSMDDADLIVLNTCHIREK 75 Q P + + GC++N R+E + ER V +AD I++NTC + + Sbjct: 27 QSARPPKVAFINLGCRVN-----RVETDVIASELERAGCEVVPQTEADAIIINTCAVTSE 81 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A K + R L ++ VV GCVA +EI + VNV V Sbjct: 82 AEAKTRKVVRRAAKLAHTP-------FVVATGCVASLHADEISSIAENVNVQVN------ 128 Query: 136 LPELLERARFGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 +A+ V++ SV+D +S + G+ +Q+GC+ C+ Sbjct: 129 ------KAQVASCVLNEFGCIAGSVDDSGNLISTPTPTGRTRPGIK----VQDGCNNRCS 178 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 FC+V RG S + +++ + R +G E+ L G N+ +R + G + LL Sbjct: 179 FCIVWKARGPACSADVDEIISQVRATQAHGAHEVVLTGINLGDYRYE-YKGSRLRLPGLL 237 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKA-HGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 + + + R+R ++ P D++D L+ G + +LH+ +QSG D L+ M R + Sbjct: 238 SEIMKQTSIERIRLSSIEPPDITDELLDVIAGSEGRIAQFLHICLQSGCDATLRRMKRNY 297 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 T YR ++R R P +A+ +D IVGFPGETDD+F + IG+A+ F+YS R Sbjct: 298 TTAFYRSAVERARDRMPHVALGTDLIVGFPGETDDEFATSYKFCKDIGFAKMHIFRYSKR 357 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 GTP + QVD +V A R + + + + + VG V+++ G Sbjct: 358 SGTPAATAEGQVDPHVMAARSRTMHELAAQMRYTQAQKLVGMRDSVVVQTAG 409 >gi|302335746|ref|YP_003800953.1| SSU ribosomal protein S12P methylthiotransferase [Olsenella uli DSM 7084] gi|301319586|gb|ADK68073.1| SSU ribosomal protein S12P methylthiotransferase [Olsenella uli DSM 7084] Length = 456 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 128/452 (28%), Positives = 214/452 (47%), Gaps = 34/452 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89 + GC N D+ RM + + G++ V +DDAD++++NTC A +E + + L + Sbjct: 22 TLGCAKNEVDTDRMRALLINAGFDEVRDVDDADVVIINTCSFLASATSESIEATLELADD 81 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + + +V+ GCV G E+ + P V V + ++ R G + Sbjct: 82 VSEGVRRR----PIVMCGCVPSRYGAELAAQLPEVAAFVRADEEDGIVAVV-RDVLG--M 134 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 +S E L V+G +A++ I EGCD+FC FC +P RG SR + Sbjct: 135 GGASFSNEATSRALRTVEG-------ASAYVKISEGCDRFCAFCAIPRIRGRYASRPEGE 187 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR-----LR 264 ++ E +L++ G E+ L+GQ+ W G L G + L + L E+ VR +R Sbjct: 188 ILSEVERLMEGGAREVVLIGQDTGIW-GSDLGGGRT----LAWLLREVAAAVRPYGAWVR 242 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 P M+D LI D + ++ Y+ +P+Q +R+L SM R + R + DR+RS Sbjct: 243 VLYLQPEGMTDELIATIRDTEEVLSYIDIPIQHCDERVLASMGRTGSIDRLRALFDRLRS 302 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P + + + +VGFPGETDD +D + + F YS GT + M QV E Sbjct: 303 EIPGMVLRTTGMVGFPGETDDQADELLDFFREQEFDYMSVFSYSREEGTKAARMDGQVPE 362 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQ------ 436 +VK +R L + + VG++++V+I+ + + +LVG + W Q Sbjct: 363 DVKLDRTQRLLDVAEQLGFAATARHVGEVVDVIIDGVEDAGDGPELVGHA-WFQAPDCDG 421 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V + S +G+ + VR+ D L GE+V Sbjct: 422 AVHIASGEATVGERVCVRLVDSFCYELVGEMV 453 >gi|194289474|ref|YP_002005381.1| ribosomal protein s12 methylthiotransferase [Cupriavidus taiwanensis LMG 19424] gi|238065328|sp|B3R4X7|RIMO_CUPTR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|193223309|emb|CAQ69314.1| putative 2-methylthioadenine synthetase [Cupriavidus taiwanensis LMG 19424] Length = 470 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 137/477 (28%), Positives = 222/477 (46%), Gaps = 65/477 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GY + D ADL+V+NTC ++A ++ Sbjct: 26 PRVGFV-SLGCPKALVDSEQIITQLRAEGYAISGTYDGADLVVVNTCGFIDEAVQESLDA 84 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G +I+ P V V GP + L E+ Sbjct: 85 IGEA-------LTENGK--VIVTGCLGAKKDAAGHDIVSSVHPKVLAVTGP---HALGEV 132 Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++ V T D F L + G A+L I EGC+ C+FC++P Sbjct: 133 MQ-------AVHTHLPKPHDPFTDL-VPAAGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 184 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR +++V+ EA L GV E+ ++ Q+ +A W G+ L K Sbjct: 185 RGDLVSRPVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRM 241 Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 ++L+ +L E+ VRL Y +P D +I + VL PYL +P+Q +L Sbjct: 242 TELVAALGELAAQYGAWVRLHYVYPYPH--VDEIIPLMNNGHVL-PYLDVPLQHAHPDVL 298 Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 K M R A + +DRIR+ R P++ I S FI GFPGET+ +F+ +D + + Sbjct: 299 KRMKRPANA---EKTMDRIRAWREICPELTIRSTFIAGFPGETEAEFQTLLDFIAEAELD 355 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + F YSP G +++ + + V+ ER + VGQ + VL+++ Sbjct: 356 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAEAVSARRLQRKVGQTLRVLVDE 415 Query: 421 HGKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ G +GRS P + +V S+ + G+ + VRIT L+GE+ Sbjct: 416 VNQDGG--IGRSSADAPEIDGLVYIAPPQRTSQRYRAGEFVDVRITGADGHDLWGEV 470 >gi|258648341|ref|ZP_05735810.1| RNA modification enzyme, MiaB family [Prevotella tannerae ATCC 51259] gi|260851506|gb|EEX71375.1| RNA modification enzyme, MiaB family [Prevotella tannerae ATCC 51259] Length = 431 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 126/443 (28%), Positives = 211/443 (47%), Gaps = 36/443 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDAD--LIVLNTCHIREKAAEKVYSFLGRIRNL 90 GC N+ DS R+ F + G+ ++ + + V+NTC A E+ + + L Sbjct: 9 GCSKNLVDSERLLHQFEAHGFTTYHNPEQTHGGIAVVNTCGFIAAAKEESINVI-----L 63 Query: 91 KNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + + KE G+L V V GC+++ E+ P V+ G + +L + L + R+ R Sbjct: 64 ELCQQKEAGNLKQVYVMGCLSERYMSELQEEIPQVDKFYGKFDWDQLLKGLSQ-RYDFRS 122 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + ER Y A+L I EGCD+ C +C +P G ISR + Sbjct: 123 AN---------ERQITTPPHY-------AYLKIAEGCDRKCAYCAIPLITGKHISRPIED 166 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 ++ E R L++ GV E ++ Q + + G L ++C ++L+ ++E G+ +R ++ Sbjct: 167 ILAEVRTLVNQGVKEFQIIEQEL-TYYGVDLYHKQC-IAELVEKIAETPGVEWVRLHYAY 224 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P D L++ D + YL + +Q SD +L+ M+R T E +I ++R PDI Sbjct: 225 PNQFPDSLLEVISKHDNICNYLDIALQHISDNVLQRMHRHVTKQETIDLIRKMREKVPDI 284 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKA 388 I + ++GFPGETD+DF + V + + + +F YS GT +N + V E+VK Sbjct: 285 CIRTTLLLGFPGETDEDFEELLQFVKETRFNRLGAFVYSEEEGTYAANHYKDDVPESVKQ 344 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNSKN 444 ERL L + R N +G +++ +I+K +E +GR SP + V +K Sbjct: 345 ERLDRLMELQRGISEELNQELIGSVLKTIIDK--QEGDYYIGRTAYDSPEVDGEVYINKA 402 Query: 445 HN--IGDIIKVRITDVKISTLYG 465 N +G V I D LYG Sbjct: 403 ENLQVGKFYDVLIQDATDYDLYG 425 >gi|57239481|ref|YP_180617.1| hypothetical protein Erum7550 [Ehrlichia ruminantium str. Welgevonden] gi|58579459|ref|YP_197671.1| hypothetical protein ERWE_CDS_07950 [Ehrlichia ruminantium str. Welgevonden] gi|57161560|emb|CAH58487.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] gi|58418085|emb|CAI27289.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 413 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 118/452 (26%), Positives = 215/452 (47%), Gaps = 56/452 (12%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S +++ + + D+IV++TC + +A +V + +IR Sbjct: 4 VITFGCRLNFYESEVIKN--------NLKKAELDDVIVVHTCAVTSEAERQVKA---KIR 52 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L N+ ++ ++VAGC AQ + P++Y +P +++ + Sbjct: 53 KLYNN----NANVKIIVAGCAAQ----------------LNPESYMSMPGVVKVLGNEDK 92 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT------------AFLTIQEGCDKFCTFCVVP 196 + Y DK ++ G R V A + IQ GC+ CTFCV+ Sbjct: 93 LKYESYITADK-----VIVGNIGSSRKVIKDSIKQFPGKSRALIEIQNGCNHECTFCVIT 147 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 RG S + ++ + + ++NG E+ G +++ + G + G++ + L Sbjct: 148 KARGNNRSLHIEDIITQVKDCVNNGYNEVVFTGVDISDF-GIDIYGQRMLGVMIKRVLGA 206 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I L RLR ++ ++ D LI G+ MP+LHL +QSG++ ILK M RRH + Sbjct: 207 IPQLRRLRLSSIDVAEIEDDLIDIIGNEPRFMPHLHLSLQSGNNLILKRMKRRHNREQVV 266 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 + +R+ +R DI +D IVGFP ET+D F T+ L+++ + F YS R GTP + Sbjct: 267 EFCNRVSGMRKDIVFGADIIVGFPTETEDMFNDTVKLIEEANISYLHIFPYSAREGTPAA 326 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 M QV V+ R L + ++ SF + + +++EK G +GR+ Sbjct: 327 RM-PQVSPEVRKRRTKYLWEISEKRLKSFYNTLLHTRQSIVVEKSG------IGRAENFA 379 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V S++ + +++V + V+ + L E++ Sbjct: 380 LVKFFSQDVQLQSVVEVMVKAVEGNYLIAEVL 411 >gi|42528109|ref|NP_973207.1| putative tRNA modifying protein [Treponema denticola ATCC 35405] gi|81570119|sp|Q73JG6|RIMO_TREDE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|41819154|gb|AAS13126.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Treponema denticola ATCC 35405] Length = 467 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 130/455 (28%), Positives = 212/455 (46%), Gaps = 55/455 (12%) Query: 32 YGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 +GC N D+ + + + ++ + D+ADLI++N+C A E+ + + K Sbjct: 4 HGCAKNQVDAELIIGIMENLSWKNTSDPDEADLIIVNSCGFINSAKEES---INAVLQAK 60 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151 + K V++AGC+A+ + + P + + G LP+L++ + F K+ D Sbjct: 61 AAHPKAK----VLLAGCLAERYADILKNDLPEADGIFGNGNLSLLPQLID-SMFPKKTSD 115 Query: 152 TDYSVEDKFERLSIVDGGYNRKRGV----TAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + +E I G R + + + ++ I EGCD FC+FC +P RG SR + Sbjct: 116 EKF-IEKTLVPPQIGICGGERPKILNFPRSTYIKITEGCDNFCSFCAIPIIRGRLRSRPI 174 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWR-GKG------LDGEKCT-FSDLLYSLSEIKG 259 + DE + + E L+GQ++ A++ GK L E C+ + LL S+S+IKG Sbjct: 175 KDICDEIKTFLKKSFYEFNLIGQDLAAYQTGKDDLSEDELHRENCSGLALLLKSISKIKG 234 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVL---------MPYLHLPVQSGSDRILKSMNRRH 310 ++R HP H LD+L +PY +P QSG+ +I+++MNR Sbjct: 235 NFKIRLLYIHPD---------HFPLDILPIMTADKRFLPYFDIPFQSGAQKIIRAMNRNG 285 Query: 311 TAYEYRQIIDRIR-------SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 A Y II IR S + I + F+VGFPGETD+DF T+ + ++ + Sbjct: 286 AAEVYLDIIKNIREAFEKTNSPYGEPQIRTTFLVGFPGETDEDFNETIKFLKELRPLWSG 345 Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--H 421 F YS TP + +V + RL +Q D+ +G+ IEVL+E+ Sbjct: 346 GFTYSREEDTPSYSFKGKVPKKTAEARLAEIQNAQTSITEKKLDSFIGKEIEVLVEELIQ 405 Query: 422 GKEKGKLVGRSPWLQ------SVVLNSKNHNIGDI 450 ++K L W Q +VVLN N N DI Sbjct: 406 AEDKTFLALGRAWFQAPEVDGAVVLNF-NLNKKDI 439 >gi|212224708|ref|YP_002307944.1| Hypothetical 2-methylthioadenine synthetase [Thermococcus onnurineus NA1] gi|212009665|gb|ACJ17047.1| Hypothetical 2-methylthioadenine synthetase [Thermococcus onnurineus NA1] Length = 425 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 119/398 (29%), Positives = 199/398 (50%), Gaps = 28/398 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + V++YGC N D+ ME + GYE V + + AD +V+NTC +++ + + Sbjct: 3 KVHVETYGCTRNKADAEIMEAILLRAGYELVETPESADYVVVNTCAVKDPTEKHMRE--- 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI+ L +S + V+V GC+ + I P V+ ++G ++ R+ E ++ A Sbjct: 60 RIKELLDSGKR------VIVTGCLTHVNPDII---DPRVSGILGVKSIDRIAEAIDLAER 110 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNR--KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 ++V + E ++L G R + GV + I EGC CT+C + RG+ Sbjct: 111 DGKLVSVEGWRERSLDKL-----GLPRLWRSGVAFVVPISEGCLNACTYCATRFARGVLK 165 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S VV ++ + G EI L ++ + G D ++LL ++ I+G R+ Sbjct: 166 SYKPELVVKWVKEALARGYREIQLSSEDTGCY---GFD-IGTNLAELLDEITSIEGEFRI 221 Query: 264 R---YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R +H D LI+A+ D V +LHLPVQSG + +L+ M R +T E+ +I++ Sbjct: 222 RVGMMNPNHAIKFLDELIEAYQDEKVYK-FLHLPVQSGDNEVLRRMGRTYTVEEFEEIVN 280 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R P + +++D IVGFPGET++ F+ T++LV ++ + +YSPR GT + + Sbjct: 281 EFRRKIPGLNLNTDIIVGFPGETEEAFQNTVELVKRVRPDKINVSRYSPRPGTIAAKWKQ 340 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 VK ER L + + N VG+ IEVLI Sbjct: 341 LPGWKVK-ERSRLLHRLRLQIAYEINQNYVGREIEVLI 377 >gi|307253302|ref|ZP_07535175.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859214|gb|EFM91254.1| Ribosomal protein S12 methylthiotransferase rimO [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 345 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 105/358 (29%), Positives = 173/358 (48%), Gaps = 40/358 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ + GY + S ++ADL+++NTC + A ++ +G Sbjct: 11 SLGCPKNLVDSERILTELRTDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE---- 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E + I P V + GP +Y + + ++ R Sbjct: 67 ---ALEENGK--VIVTGCLGAKENQ-IREVHPKVLEITGPHSYEAV--MKHVHKYVPRPE 118 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y+ + + + Y A+L I EGCD CTFC++P RG SR + QV Sbjct: 119 RNIYTSLVPAQGVKLTPKHY-------AYLKISEGCDHRCTFCIIPSMRGDLDSRPIVQV 171 Query: 211 VDEARKLIDNGVCEITLLGQNVNA---------------WRGKGLDGEKCTFSDLLYSLS 255 +DEA++L D+GV E+ ++ Q+ +A W G + T + L +L Sbjct: 172 LDEAKRLADSGVKELLIVSQDTSAYALDQSKENQNKTVFWNGVPIKNNLITLCEQLGTLG 231 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 VRL Y +P + A G + +PYL +P+Q S ++LK+M R Sbjct: 232 I---WVRLHYVYPYPHVDDLIPLMAQGKI---LPYLDIPLQHASPKVLKAMKRPGAIDRT 285 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + I + R + P++ + S FIVGFPGET++DF+ +D +++ + FK+SP G Sbjct: 286 LERIKKWREICPELTLRSTFIVGFPGETEEDFQMLLDFLEEAQLDRVGCFKFSPVEGA 343 >gi|300727098|ref|ZP_07060517.1| conserved hypothetical protein [Prevotella bryantii B14] gi|299775642|gb|EFI72233.1| conserved hypothetical protein [Prevotella bryantii B14] Length = 459 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 130/450 (28%), Positives = 202/450 (44%), Gaps = 47/450 (10%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N ++ M G + AD+ ++NTC + E A K + R+ Sbjct: 18 GCKLNFSETSTFGKMLQDMGVHAAKKGEKADICIINTCSVTEMADHKCRQQIHRM----- 72 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD- 151 ++E VVV GC AQ E E++ + V++V+G L + L A G+ D Sbjct: 73 --VRENPGSFVVVTGCYAQLESEKVSKIDG-VDLVLGSNEKANLIQYLNDAFTGQLTSDM 129 Query: 152 -------TD-------YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 TD +SV K + +R FL +Q+GC+ FCT+C +PY Sbjct: 130 SVNRSESTDTEHLHSYHSVRTK--DIKTFQPSCSRGNRTRYFLKVQDGCNYFCTYCTIPY 187 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC--TFSDLLYSLS 255 RG + S+ +V +A + + G EI L G N+ + GE +F DL+ +L Sbjct: 188 ARGFSRNPSIVSLVKQAEEAAEEGGKEIVLTGVNIGDF------GETTNESFLDLVKALD 241 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 +++G+ R R ++ P D LI+ MP+ H+P+QSGSD +LK M+RR+ + + Sbjct: 242 QVQGIQRFRISSLEPDLCDDELIEYCSTSRAFMPHFHIPLQSGSDEVLKLMHRRYDSALF 301 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I I+ PD I D +VG GE + F ++ + Q F YS R GT Sbjct: 302 AHKIKLIKKFMPDAFIGVDVMVGCRGEKPEYFEECYRFLESLPVTQLHVFPYSERPGTSA 361 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-------HGKEKGKL 428 ++ VD+ K R+ L ++ F +G EVL EK HG K + Sbjct: 362 LSIPYVVDDKEKKRRVKELLALSDKKTQDFYSNYIGTEAEVLFEKSAVGKAMHGFTKNYI 421 Query: 429 -VGRSPWLQSVVLNSKNHNIGDIIKVRITD 457 V SP L +K +IKVR+ D Sbjct: 422 RVELSPAL------AKEDFDNQLIKVRLGD 445 >gi|291436894|ref|ZP_06576284.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291339789|gb|EFE66745.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 491 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 131/438 (29%), Positives = 197/438 (44%), Gaps = 41/438 (9%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G+ V +AD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLEADGWRLVEDAAEADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYY----R 135 L L+ + +KE G VVA GC+A+ G+E+ P + V+G Y R Sbjct: 61 VDAL-----LEANDLKEHGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYTDISDR 115 Query: 136 LPELL----------------------ERARFGKRVVDTDYSVEDKFERLSIVDGGYN-- 171 L +L ER G V + D E L+ G Sbjct: 116 LQTILSGGIHASHTPRDRRKLLPLSPVERQAAGASVALPGHGPADLPEGLAPASGPRAPL 175 Query: 172 RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228 R+R A + + GCD+ C+FC +P RG ISR S V++E R L + GV EI L+ Sbjct: 176 RRRLDGSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEIMLV 235 Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288 +N N GK L G+ LL L+E+ GL R+R + P +M LI + Sbjct: 236 SEN-NTSYGKDL-GDIRLLESLLPELAEVDGLERVRVSYLQPAEMRPGLIDVLTSTPKVA 293 Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348 PY L Q + +L++M R + +++D IRS P + S+FIVGFPGE++ D Sbjct: 294 PYFDLSFQHSAPGVLRAMRRFGDTDRFLELLDTIRSRAPQAGVRSNFIVGFPGESEADLA 353 Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408 ++ F YS GT + +++E+V AERL + + E D Sbjct: 354 ELERFLNHARLDAIGVFGYSDEEGTEAATYDTKLEEDVVAERLARVSRLAEELVSQRADE 413 Query: 409 CVGQIIEVLIEKHGKEKG 426 VG+ + VL+E +E+G Sbjct: 414 RVGETVHVLVESVDEEEG 431 >gi|314923015|gb|EFS86846.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL001PA1] Length = 474 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 133/465 (28%), Positives = 208/465 (44%), Gaps = 56/465 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + + G+ V+ +A+ +V+NTC E+A + L +L Sbjct: 7 SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145 + + G VV GC+A+ G E+ P + V+G Y RL +L+ Sbjct: 67 RGN----GTTTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122 Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179 +R + V+ R + G+ R+R G +A Sbjct: 123 THVPRDRRTLLPISPVDRPIARAEVSVPGHGTAPDLPASVAPESGPRPTRRRLGTGPSAP 182 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L + GCD+ C FC +P RG +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK Sbjct: 183 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL +L ++ GL +R + P ++ LI D ++PY L Q S Sbjct: 242 L-GDLRLLEKLLVTLDQVDGLEWIRVSYLQPAELRPGLIDTILAADKVVPYFDLSFQHAS 300 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+SM R A + IID IRS P+ S+FI GFPGETD D D + + Sbjct: 301 GPVLRSMRRFGDAESFLNIIDSIRSRCPEAGFRSNFITGFPGETDADVAVLADFLQRARL 360 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 A F YS GT + + VDE+V R RE D V Q E I Sbjct: 361 DVAGIFAYSDEEGTEAAGLDGHVDEDVITAR--------REDLADLTDELVSQRAEDRIG 412 Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453 G+ ++GR+ P + V +++ ++GDI+ V Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457 >gi|302335758|ref|YP_003800965.1| RNA modification enzyme, MiaB family [Olsenella uli DSM 7084] gi|301319598|gb|ADK68085.1| RNA modification enzyme, MiaB family [Olsenella uli DSM 7084] Length = 422 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 120/413 (29%), Positives = 197/413 (47%), Gaps = 46/413 (11%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM----DDADLIVLNTCHIREKAAEK 79 P+ FV + GC++N R+E +Q R + ++AD +V+NTC + +A K Sbjct: 4 PRVAFV-NLGCRVN-----RVEVDLIAQELARAGCVIVKPEEADAVVVNTCAVTAEAEAK 57 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 + R +L G + VVVA GCVA +E+ +P V V Sbjct: 58 TRKVVRRAASL--------GQVPVVVATGCVASLFSDELASIAPNVTVEA---------- 99 Query: 139 LLERARFGKRVVD----TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 +++R + V+ SV D E ++ + G+ +Q+GCD CT+C+ Sbjct: 100 --DKSRVSETVLGELGLPAGSVGDDGELVATPTPTGRARPGIK----VQDGCDNRCTYCI 153 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 V RG S +VV R + G E+ L G N+ ++RG G + LL + Sbjct: 154 VWKARGAARSMGSGEVVSAVRDALSRGAREVVLTGINLGSFRGTCAGGGRIALPGLLELV 213 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKA-HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 + R+R ++ P D+ L+ + + P+LH+ +QSG D L+ M R + Sbjct: 214 LRETTVERVRLSSIEPPDVDGELLSVMAANPARIAPFLHVCLQSGCDATLRRMGRVYDTA 273 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 YR I R R + P IA+ D IVGFPGETDDDF ++ ++ +A+ F+YS R GT Sbjct: 274 LYRTAIARAREMVPGIAVGCDLIVGFPGETDDDFERSLAFCAEMDFAKMHVFRYSRRPGT 333 Query: 374 PGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 P ++ +QV +V ++ R+ L ++R Q + VGQ V++++ G+ Sbjct: 334 PAASAPDQVGPDVMAARSSRMRALADRMRHDQAARR---VGQEELVVVQRPGR 383 >gi|198276872|ref|ZP_03209403.1| hypothetical protein BACPLE_03077 [Bacteroides plebeius DSM 17135] gi|198270397|gb|EDY94667.1| hypothetical protein BACPLE_03077 [Bacteroides plebeius DSM 17135] Length = 438 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 116/396 (29%), Positives = 192/396 (48%), Gaps = 28/396 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFAETSSIGKTLKEAGVRTARKGEKADICVINTCSVTEMADKKCRQAIHRLS-- 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 ++ D +VV GC AQ + ++ V++V+G + L L ++ G+ Sbjct: 74 -----RQHPDAFIVVTGCYAQLKPGQVADIEG-VDLVLGAEQKGELMNYLGNLQKHTHGE 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 VV + S D R R FL +Q+GCD FC++C +P+ RG + + Sbjct: 128 AVVTATKDIRTFSPSCSRGD----RTR---YFLKVQDGCDYFCSYCTIPFARGRSRNGKI 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +V +AR+ G EI L G N+ + GK GE TF DL+ +L E++G+ R R ++ Sbjct: 181 EDLVTQARQAAAEGGKEIVLTGVNIGDF-GKST-GE--TFFDLVKALDEVEGIERYRISS 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D +I+ MP+ H+P+QSG D +LK M RR+ + I +I+S+ P Sbjct: 237 IEPNLLTDEIIEYVAQSRRFMPHFHIPLQSGCDEVLKLMRRRYDTALFAAKIAKIKSLMP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDE 384 D I D IVG GET + F + + + Q F YS R GT + + ++ Sbjct: 297 DAFIGVDVIVGTRGETPEYFEKAYEFIKGLDVTQLHVFSYSERPGTQALKIDYVVPAQEK 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + +++RLL L E+ +F +G EVL+EK Sbjct: 357 HARSQRLLELSD---EKTKAFYARHIGAEAEVLMEK 389 >gi|269837471|ref|YP_003319699.1| MiaB-like tRNA modifying enzyme YliG [Sphaerobacter thermophilus DSM 20745] gi|269786734|gb|ACZ38877.1| MiaB-like tRNA modifying enzyme YliG [Sphaerobacter thermophilus DSM 20745] Length = 466 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 126/459 (27%), Positives = 223/459 (48%), Gaps = 38/459 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F + + GC N DS + + QG V +DA ++V+NTC AA + S + Sbjct: 3 ESFHIVTLGCSKNQVDSEGIARVLSQQGMTPVARPEDARVLVVNTCGF--LAASRQES-V 59 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G I L +R D +V+ AGC+A + +EI V+ ++ + + + ++ Sbjct: 60 GVINELLETRRP---DQVVIAAGCMASLDQHRQEIPEG---VDAILSTREWANIGHVV-- 111 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ + D + F+ ++ R G +A++ I +GCD C FCV+P +G + Sbjct: 112 ---GRLLGYEDIPPQPPFDPAGMLTSFTRRDAGPSAYVKIADGCDHGCHFCVIPLIKGRQ 168 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSE-IKGL 260 +S+ S V+ E R+L+D G E+ L+ Q+ + G D G K LL ++E + L Sbjct: 169 VSKRPSDVIREIRELVDGGTKEVILVAQDTIRY---GADLGIKNGLPGLLRMIAEEVPDL 225 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 LR +P ++ L+ A + + +PYL +P+Q +L+ M R + R++ID Sbjct: 226 PWLRMLYIYPSPLTLRLVDAMTEHPMFVPYLDMPIQHADPTVLRRMGRPSSIDMTRRLID 285 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+ PD+ + + IVG+PGET++ F+ D V ++ + F YS T + + Sbjct: 286 HARNRLPDVTMRTTLIVGYPGETEEQFQRLYDFVAEMEFDHVGVFTYSYEPNTKSALLDN 345 Query: 381 QV-DENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGK---EKGKL----VG 430 V E +A R ++ +Q +S N A VG+ +EVL+E G+ E+G+ VG Sbjct: 346 PVPPEEAEARRAAIMEL---QQGISLKKNQALVGRTLEVLVEAVGEMEDERGRTEPISVG 402 Query: 431 R----SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 R +P + +V +G++I+ R+T L+ Sbjct: 403 RARRHAPEVDGLVFIPGALPVGELIQARVTAASPYDLWA 441 >gi|39933328|ref|NP_945604.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris CGA009] gi|39652953|emb|CAE25695.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris CGA009] Length = 423 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 132/448 (29%), Positives = 208/448 (46%), Gaps = 60/448 (13%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N ++S + G AD IV+N+C + +A + +IR Sbjct: 5 VVTFGCRLNAFESELIRREAEGAGL--------ADTIVVNSCAVTNEAVAQARQ---QIR 53 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 LK +R + ++V GC AQ E + V+ V+G R A G Sbjct: 54 KLKRAR----PEARIIVTGCAAQTEPATFAAMAE-VDRVIGNDDKTRSDAW--HAAKGAL 106 Query: 149 VVDTDYSVEDKFERLSIVD------------GGYNRKRGVT-AFLTIQEGCDKFCTFCVV 195 + + D +++++ D GY + G+ F+ +Q GCD CTFC++ Sbjct: 107 EAGPSFGL-DTEQKIAVADIMAVREMAPHLLDGY--QSGLPRVFVQVQNGCDHRCTFCII 163 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 PY RG S + VV++ R L + G EI L G ++ ++ G L G + + L Sbjct: 164 PYGRGNSRSVPVGAVVEQVRLLAERGHAEIVLTGVDLTSY-GADLPGAPKLGTLVKKVLR 222 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + L RLR ++ + LI A LMP+LHL +Q+G D +LK M RRH + Sbjct: 223 HVPELQRLRISSIDQVEADRDLIDALATEPRLMPHLHLSLQAGDDLVLKRMKRRHCRADA 282 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + +R +RPDIA+ +D I GFP ET++ F+ ++DLV++ G F YSPR GTP Sbjct: 283 VAFCEEVRLLRPDIALGADLIAGFPTETEEMFQRSLDLVEECGLTFLHVFPYSPRPGTPA 342 Query: 376 SNMLEQVDENV--------KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 + M Q+D V +A LQ++L DA +G VLIE + Sbjct: 343 ARM-PQLDGRVIRDRAARLRAAGEAALQRRL--------DAEIGATRAVLIESPTQ---- 389 Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRI 455 GR+ V ++ GD+ +RI Sbjct: 390 --GRTEHFLPVAISGATP--GDVQTLRI 413 >gi|38345374|emb|CAD40910.2| OSJNBa0088K19.13 [Oryza sativa Japonica Group] Length = 626 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 123/456 (26%), Positives = 211/456 (46%), Gaps = 44/456 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q +VK++GC N DS M + GY + ADL ++NTC ++ + + + + Sbjct: 58 QTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLI 117 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ +VVAGCV Q G L+ ++V+ G Q R+ E++E Sbjct: 118 SKCKSANKP---------LVVAGCVPQ--GSRDLKELEGISVI-GVQQIDRVVEVVEETL 165 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G V + L +D RK L I GC CT+C + RG S Sbjct: 166 KGHEVRLLSR------KTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGS 219 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKG------LDGEKCTFSDLLYSLSEI 257 ++ +VD + ++ GV EI L ++ A+ R G L+G ++ I Sbjct: 220 YTIESLVDRVKIVVSEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRI 279 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 G+ + H ++++ L + +LH+PVQSGSD +L +MNR +T E+R+ Sbjct: 280 -GMTNPPFILEHLKEIASVLCHP-----CVYSFLHVPVQSGSDAVLTAMNREYTVSEFRR 333 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++D + + P + I++D I GFPGETD+DF T++LV + + Q ++ PR GTP + Sbjct: 334 VVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAAR 393 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFND-----ACVGQIIEVLIEKHGKEKGKLVGRS 432 M + VK K+ RE F G++ + I + + LVG + Sbjct: 394 MKKVPSVEVK--------KRSRELTSVFESFSPYQGMEGKVERIWITEIATDGVHLVGHT 445 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V++ + + +G V+IT V +++GE++ Sbjct: 446 KGYIQVLVIAPDSMLGTSADVKITSVGRWSVFGEVI 481 >gi|327330227|gb|EGE71976.1| Fe-S oxidoreductase [Propionibacterium acnes HL097PA1] Length = 474 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 134/465 (28%), Positives = 205/465 (44%), Gaps = 56/465 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + + G+ V+ +A+ +V+NTC E+A + L +L Sbjct: 7 SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLE----- 141 K + I VV GC+A+ G E+ P + V+G Y RL +L+ Sbjct: 67 KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122 Query: 142 -----------------RARFGKRVVDTDYSVEDKFERLSIVDGG--YNRKR---GVTAF 179 R V + F D G R+R G +A Sbjct: 123 THVPRDRRTLLPISPVNRPTARAEVSVPGHGTAPDFSASVTPDSGPRATRRRLGTGPSAP 182 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L + GCD+ C FC +P RG +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK Sbjct: 183 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL +L ++ GL +R + P ++ LI D ++PY L Q S Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 300 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+ M R A + IID IRS P+ + S+FI GFPGETD D D + + Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 360 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 A F YS GT + + VDE+V R RE D V Q E I Sbjct: 361 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 412 Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453 G+ ++GR+ P + V +++ ++GDI+ V Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457 >gi|115458480|ref|NP_001052840.1| Os04g0434300 [Oryza sativa Japonica Group] gi|113564411|dbj|BAF14754.1| Os04g0434300 [Oryza sativa Japonica Group] Length = 621 Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 123/456 (26%), Positives = 212/456 (46%), Gaps = 44/456 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q +VK++GC N DS M + GY + ADL ++NTC ++ + + + + Sbjct: 53 QTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLI 112 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + ++ +VVAGCV Q G L+ ++V+ G Q R+ E++E Sbjct: 113 SKCKSANKP---------LVVAGCVPQ--GSRDLKELEGISVI-GVQQIDRVVEVVEETL 160 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G V + L +D RK L I GC CT+C + RG S Sbjct: 161 KGHEVRLLSR------KTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGS 214 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKG------LDGEKCTFSDLLYSLSEI 257 ++ +VD + ++ GV EI L ++ A+ R G L+G ++ I Sbjct: 215 YTIESLVDRVKIVVSEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRI 274 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 G+ + H ++++ L + +LH+PVQSGSD +L +MNR +T E+R+ Sbjct: 275 -GMTNPPFILEHLKEIASVLCHP-----CVYSFLHVPVQSGSDAVLTAMNREYTVSEFRR 328 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++D + + P + I++D I GFPGETD+DF T++LV + + Q ++ PR GTP + Sbjct: 329 VVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAAR 388 Query: 378 MLEQVDENVKAERLLCLQKKLRE-----QQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 M + VK K+ RE + S G++ + I + + LVG + Sbjct: 389 MKKVPSVEVK--------KRSRELTSVFESFSPYQGMEGKVERIWITEIATDGVHLVGHT 440 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V++ + + +G V+IT V +++GE++ Sbjct: 441 KGYIQVLVIAPDSMLGTSADVKITSVGRWSVFGEVI 476 >gi|83745890|ref|ZP_00942947.1| Fe-S OXIDOREDUCTASE [Ralstonia solanacearum UW551] gi|83727580|gb|EAP74701.1| Fe-S OXIDOREDUCTASE [Ralstonia solanacearum UW551] Length = 462 Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 135/477 (28%), Positives = 223/477 (46%), Gaps = 65/477 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + ADL+V+NTC ++A ++ Sbjct: 18 PRVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 76 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G +I+ P V V GP + L E+ Sbjct: 77 IGEA-------LAENGK--VIVTGCLGAKKDATGNDIITSVHPKVLAVTGP---HALGEV 124 Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 +E V T D F L + G A+L I EGC+ C+FC++P Sbjct: 125 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 176 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR +++V+ EA L+ GV E+ ++ Q+ +A W G+ L K Sbjct: 177 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPL---KTRM 233 Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 ++L+ +L E+ VRL Y +P + A G + +PYL +P+Q +L Sbjct: 234 TELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPDVL 290 Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 K M R A + +DRIR+ R P++ I S FI GFPGET+++F+ +D + + Sbjct: 291 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIGEAELD 347 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + F YSP G +++ + + V+ ER + VG+ + VL+++ Sbjct: 348 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLVDE 407 Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467 ++ G +GRS P + +V + K + GD + V+IT L+GE+ Sbjct: 408 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKTGDFVSVKITGADGHDLWGEV 462 >gi|207743025|ref|YP_002259417.1| 2-methylthioadenine synthetase protein [Ralstonia solanacearum IPO1609] gi|206594422|emb|CAQ61349.1| 2-methylthioadenine synthetase protein [Ralstonia solanacearum IPO1609] Length = 459 Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 135/477 (28%), Positives = 223/477 (46%), Gaps = 65/477 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + ADL+V+NTC ++A ++ Sbjct: 15 PRVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G +I+ P V V GP + L E+ Sbjct: 74 IGEA-------LAENGK--VIVTGCLGAKKDATGNDIITSVHPKVLAVTGP---HALGEV 121 Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 +E V T D F L + G A+L I EGC+ C+FC++P Sbjct: 122 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 173 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR +++V+ EA L+ GV E+ ++ Q+ +A W G+ L K Sbjct: 174 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPL---KTRM 230 Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 ++L+ +L E+ VRL Y +P + A G + +PYL +P+Q +L Sbjct: 231 TELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPDVL 287 Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 K M R A + +DRIR+ R P++ I S FI GFPGET+++F+ +D + + Sbjct: 288 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIGEAELD 344 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + F YSP G +++ + + V+ ER + VG+ + VL+++ Sbjct: 345 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLVDE 404 Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467 ++ G +GRS P + +V + K + GD + V+IT L+GE+ Sbjct: 405 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKTGDFVSVKITGADGHDLWGEV 459 >gi|196007898|ref|XP_002113815.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens] gi|190584219|gb|EDV24289.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens] Length = 529 Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 122/468 (26%), Positives = 215/468 (45%), Gaps = 43/468 (9%) Query: 16 QIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 + V I+P Q +++++GC N D M S GY+ ++ADL +LN+C ++ Sbjct: 58 KAVGDSIIPGTQGIYIRTWGCSHNKSDGEYMAGQLSSYGYKITEIPEEADLWLLNSCAVK 117 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQ 131 A + Y+ + + + LK +V+AGCV Q + +R P+++ VVG Q Sbjct: 118 NPAEDSFYNDIRKAKELKK---------YLVLAGCVPQGQ-----KRHPLMDGISVVGVQ 163 Query: 132 TYYRLPELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 R+ E++E G V + K + ++ RK + + I GC C Sbjct: 164 QIDRVVEVVEETLKGHSVRLFGQKRKNGKKLGGAPLNLPKIRKNPLVEIIAINTGCLNAC 223 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 T+C + RG S + +V+ A+ + GV EI + ++ A+ G+D + DL Sbjct: 224 TYCKTKHARGDLGSYPIEDIVERAKTAFNEGVAEIWITSEDTGAY---GID-IGVSLPDL 279 Query: 251 LYSLSEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 L+ L ++ G+ Y H +M+ L + +LH+PVQ+GSD++ Sbjct: 280 LWQLVKVIPDGAMLRIGMTNPPYILEHLEEMAKILSHPR-----VYSFLHVPVQAGSDKV 334 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L M R +T ++ ++++ + P I I++D I GFP E DDF T+ L+++ + Sbjct: 335 LYDMRREYTVTDFEKVVNYLSDKVPGITIATDIICGFPTEEKDDFAKTLRLIERHKFPSV 394 Query: 363 FSFKYSPRLGTPGSNMLEQVDENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 F ++ PR GTP + M E VK + L L K R D +G+ +LI + Sbjct: 395 FINQFYPRPGTPAAKMKRIPTEEVKNRSRELTQLFKSYRPY-----DHKLGERQRILITE 449 Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + VG + + V++ +G ++V I + L G +V Sbjct: 450 LSHDGNHFVGHNKFYDQVLVPMDMDLLGKTVEVDIIETGKHYLMGRVV 497 >gi|126178768|ref|YP_001046733.1| MiaB-like tRNA modifying enzyme [Methanoculleus marisnigri JR1] gi|125861562|gb|ABN56751.1| MiaB-like tRNA modifying enzyme [Methanoculleus marisnigri JR1] Length = 374 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 95/275 (34%), Positives = 146/275 (53%), Gaps = 12/275 (4%) Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 R G T + + GC C++C+ RG IS + D R L+ +G CEI L GQ Sbjct: 75 TRGPGATGVVQVASGCVGRCSYCITRLARGRLISAPREAIADAVRALVTSGACEIQLTGQ 134 Query: 231 NVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCLIKAHGDLDV 286 +V AW GLD GE + DLL ++EI G +R HP + + L+ A+ + Sbjct: 135 DVAAW---GLDRGE--SLPDLLQEIAEIPGRFAVRPGMMHPATVLGILEPLVDAYESKKI 189 Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 +LHLPVQSGSD +L+ M R +TA + +I+D R PD+ ISSDFI GFPGETD++ Sbjct: 190 FR-FLHLPVQSGSDTVLERMQRGYTAADVLRIVDAFRERYPDMMISSDFITGFPGETDEE 248 Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406 F T++L+ + + + +YS R GTP + L+ + E ++ +R L + S+N Sbjct: 249 FSQTLELLRRAAFVKVNITRYSRRPGTPAA-ALKDLPERIRKDRSRTLLAEANRVYDSYN 307 Query: 407 DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + +G+ + + G V R+P +VV+ Sbjct: 308 ERWIGRETSI-VATEKNAPGSTVCRNPCYLNVVVK 341 >gi|222111666|ref|YP_002553930.1| ribosomal protein s12 methylthiotransferase [Acidovorax ebreus TPSY] gi|221731110|gb|ACM33930.1| MiaB-like tRNA modifying enzyme YliG [Acidovorax ebreus TPSY] Length = 463 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 135/486 (27%), Positives = 215/486 (44%), Gaps = 60/486 (12%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 +SQ + P+ FV S GC N+ DS + ++GYE + + ADL+++NTC Sbjct: 1 MSQALSPAKTPKIGFV-SLGCPKNLTDSELLLTQLSAEGYETSKTFEGADLVIVNTCGFI 59 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVG 129 ++A ++ +G + E G V+V GC+ GE + P V V G Sbjct: 60 DEAVKESLDTIGEA-------LAENGK--VIVTGCLGARAGETGGNLVKEVHPSVLAVTG 110 Query: 130 PQTYYRLPELLERARFGKRVVDTD-YSVEDKFERLSIVDGGYNRKRGVT------AFLTI 182 P E++E VV T D F L +V G + + G+ A+L I Sbjct: 111 PHAAQ---EVME-------VVHTHCPKPHDPF--LDLVPGSFG-EAGIKLTPRHYAYLKI 157 Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-------- 234 EGC+ CTFC++P RG +SR + V+ EA+ L + GV E+ ++ Q+ +A Sbjct: 158 SEGCNHRCTFCIIPSMRGDLVSRPVGDVLKEAKALFEGGVKELLVISQDTSAYGVDVKYR 217 Query: 235 ---WRGKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290 W GK + L ++ G VRL Y +P + A G +++PY Sbjct: 218 TGFWDGKPVKTRTLELVQTLGEMAATYGAWVRLHYVYPYPSVDDIIPLMAQG---LVLPY 274 Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350 L +P Q +LK M R + + + I R R P+I I S FI GFPGET+++F+ Sbjct: 275 LDVPFQHSHPDVLKRMKRPASGEKNLERILRWREACPEIVIRSTFIAGFPGETEEEFQHL 334 Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410 +D V + +A F YS G + + + ++ ER E + V Sbjct: 335 LDFVREAQIDRAGCFAYSDVEGAAANELPGMLPMELREERRARFMAVAEEVSTAKLQRRV 394 Query: 411 GQIIEVLIEK-----HGKEKGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVK 459 GQ ++VL+++ G+ +P + VV SK + +GD +K RI + Sbjct: 395 GQTMQVLVDQAVGLGKKGGVGRSYADAPEIDGVVHLLPPEKFSKTYKVGDFVKARIVGTQ 454 Query: 460 ISTLYG 465 L G Sbjct: 455 GHDLVG 460 >gi|240851393|ref|YP_002972796.1| tRNA modification enzyme, MiaB family [Bartonella grahamii as4aup] gi|240268516|gb|ACS52104.1| tRNA modification enzyme, MiaB family [Bartonella grahamii as4aup] Length = 427 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 115/397 (28%), Positives = 187/397 (47%), Gaps = 28/397 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N Y+S + S G +++ D A I+ NTC + +A + + + R Sbjct: 7 TFGCRLNSYESEIIRKESTSSGLDQLK--DGA--IIFNTCAVTAEAVRQAKQAIRKAR-- 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144 +E ++V GC AQ E + V++V+G +Y +LP+ Sbjct: 61 -----RENPHARIIVTGCAAQTEAQNFASMRE-VDLVLGNEDKLHAHSYRQLPDFGINHS 114 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 R+ D +E + +V R R AF+ +Q GCD CTFC++PY RG S Sbjct: 115 EKVRINDI---MEVQKIAPHMVSAMQERTR---AFVQVQNGCDHRCTFCIIPYGRGPSRS 168 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRL 263 + V+++ +KLI G+ E+ L G ++ ++ G L G K T L + L + L RL Sbjct: 169 VPMGAVIEQIKKLIGEGIQEVVLTGVDLTSY-GHDLPG-KATLGKLTSAILHHVPNLARL 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ + + LI +MP+LHL +Q+G + ILK M RRH Q +R Sbjct: 227 RLSSIDSIEADEELINLLAYETRIMPHLHLSLQAGDNMILKRMKRRHLREHAIQFCQELR 286 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + RP + +D I GFP ET++ F+ ++ L+ F +SPR GTP + M Q++ Sbjct: 287 AKRPTMVYGADLIAGFPTETEEMFQNSLVLIKDCNLTHLHVFPFSPREGTPAARM-PQIN 345 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + R L+K E + VLIEK Sbjct: 346 RKIVKIRAEKLRKAGEEAYQKHLSHLQNSLQTVLIEK 382 >gi|257784598|ref|YP_003179815.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469] gi|257473105|gb|ACV51224.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469] Length = 423 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 123/400 (30%), Positives = 192/400 (48%), Gaps = 31/400 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N + M + G V D+A IV+NTC + +A K + + Sbjct: 9 NLGCRVNRVELDLMAESLLRMGCHIVEE-DEAQAIVINTCAVTAEAEAKTR------KAV 61 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + + + G L VV GCVA EE+ +P NVVV + +LE F V Sbjct: 62 RKAALMPGAPL-VVATGCVASLFAEELASLAP--NVVVEAEKDKVADRVLEELGFAPESV 118 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D V K G + IQ+GCD CTFC+V RG S +V Sbjct: 119 SDDGLVISKPTPTGRTRPG----------IKIQDGCDNRCTFCIVWKARGAGKSLDPRKV 168 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKC-TFSDLLYSLSEIKGLVRLRYTTS 268 V + + + G E+ L G N+ +++ + D GEK DLL + E + RLR ++ Sbjct: 169 VSQVKDAMSRGAQEVVLTGINLGSYKVQLEDEGEKIFRLPDLLEYVLEKTEVGRLRLSSL 228 Query: 269 HPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P D++ L+K + + P+LH+ +QSG D L M R + YR+ ++ RS Sbjct: 229 EPPDVNARLVKVIAASNGRVAPFLHICLQSGCDATLARMGRVYRTELYRKAVEEARSELS 288 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 IA+ +D IVGFPGETD +F + + ++G+++ F+YS R GTP + QV+ V Sbjct: 289 TIALGTDLIVGFPGETDKEFEESYEFCRQMGFSKMHVFRYSKRPGTPAATAPNQVNPKVM 348 Query: 388 AERLLCLQKKLRE--QQVSFNDA--CVGQIIEVLIEKHGK 423 AER KK+R+ ++ F+ A +G V+++ GK Sbjct: 349 AER----AKKMRDLGNKMRFDAAKKLIGTCDNVVVQYPGK 384 >gi|207724170|ref|YP_002254568.1| 2-methylthioadenine synthetase protein [Ralstonia solanacearum MolK2] gi|206589380|emb|CAQ36342.1| 2-methylthioadenine synthetase protein [Ralstonia solanacearum MolK2] Length = 459 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 135/477 (28%), Positives = 223/477 (46%), Gaps = 65/477 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + ADL+V+NTC ++A ++ Sbjct: 15 PRVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G +I+ P V V GP + L E+ Sbjct: 74 IGEA-------LAENGK--VIVTGCLGAKKDATGNDIITSVHPKVLAVTGP---HALGEV 121 Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 +E V T D F L + G A+L I EGC+ C+FC++P Sbjct: 122 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 173 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR +++V+ EA L+ GV E+ ++ Q+ +A W G+ L K Sbjct: 174 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPL---KTRM 230 Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 ++L+ +L E+ VRL Y +P + A G + +PYL +P+Q +L Sbjct: 231 TELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPDVL 287 Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 K M R A + +DRIR+ R P++ I S FI GFPGET+++F+ +D + + Sbjct: 288 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIGEAELD 344 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + F YSP G +++ + + V+ ER + VG+ + VL+++ Sbjct: 345 RVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLVDE 404 Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467 ++ G +GRS P + +V + K + GD + V+IT L+GE+ Sbjct: 405 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKTGDFVSVKITGADGHDLWGEV 459 >gi|313807488|gb|EFS45975.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL087PA2] Length = 474 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 133/465 (28%), Positives = 208/465 (44%), Gaps = 56/465 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + + G+ V+ +A+ +V+NTC E+A + L +L Sbjct: 7 SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145 K + I VV GC+A+ G E+ P + V+G Y RL +L+ Sbjct: 67 KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122 Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179 +R + V+ R + G+ R+R G +A Sbjct: 123 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 182 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L + GCD+ C FC +P RG +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK Sbjct: 183 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL +L ++ GL +R + P ++ LI D ++PY L Q S Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 300 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+ M R A + IID IRS P+ + S+FI GFPGETD D D + + Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 360 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 A F YS GT + + VDE+V R RE D V Q E I Sbjct: 361 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 412 Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453 G+ ++GR+ P + V +++ ++GDI+ V Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457 >gi|116620691|ref|YP_822847.1| MiaB-like tRNA modifying enzyme YliG [Candidatus Solibacter usitatus Ellin6076] gi|122255158|sp|Q028J0|RIMO_SOLUE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|116223853|gb|ABJ82562.1| MiaB-like tRNA modifying enzyme YliG [Candidatus Solibacter usitatus Ellin6076] Length = 465 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 126/454 (27%), Positives = 211/454 (46%), Gaps = 33/454 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 S GC N+ DS M ++G+E + D AD++V+NTC + A E V + L Sbjct: 7 SLGCPKNLVDSEVMMGQLVAKGHELTSHPDQADVLVVNTCSFIDPAKKESVDTILEMAEY 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K R K+ ++VAGC+ + +I P V+ ++G + ++ E Sbjct: 67 KKIGRAKK-----LIVAGCLVERYRGDIRTEMPEVDALIGTNELDSIVDICEGMPPSTNP 121 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 ++ Y D R+ + A++ I EGCD CTFCV+P RG SR Sbjct: 122 LEP-YLYHDLTPRVLATPRHF-------AYMKIAEGCDHPCTFCVIPQYRGAFRSRRFES 173 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR--LRYTT 267 VV EA +L G+ EI L+GQ+ + G+ L G K ++LL L++I+ +R+ Sbjct: 174 VVSEATRLFQQGIREINLIGQDTTCY-GEDL-GLKDGLAELLARLAQIETPQEKWIRFLY 231 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P ++ L+ + L Y+ +P+Q S +LK M R + + ++I+RIR P Sbjct: 232 AYPNKVTQKLLDTLAEHAALAKYIDMPLQHASANVLKRMKRGASGDIFLKLIERIRRTIP 291 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV- 386 +AI + FIVGFPGET DF V+ + F YS + + +VD Sbjct: 292 GVAIRTSFIVGFPGETAADFDELCAFVEAAKFDNLGVFTYSDEDTSASYALDGKVDGRTI 351 Query: 387 --KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVV 439 + RL+ +Q+K+ + N VG+ + VL+ E + ++ ++P + V Sbjct: 352 QNRKRRLMAIQRKIARAR---NRGLVGKEVPVLVSGVSGETDLLWEARMSTQAPEIDGVT 408 Query: 440 L----NSKNHNIGDIIKVRITDVKISTLYGELVV 469 L G+I ++RIT+ + G L+ Sbjct: 409 LINDFEGSEPRAGEIRRLRITEAHDYDVVGTLLA 442 >gi|58584362|ref|YP_197935.1| 2-methylthioadenine synthetase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418678|gb|AAW70693.1| 2-methylthioadenine synthetase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 411 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 121/440 (27%), Positives = 221/440 (50%), Gaps = 33/440 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S +++ + ER N ++V+++C + +A +V + +I Sbjct: 4 VVTFGCRLNFYESELIKEAL--RKAEREN------VVVVHSCAVTNEAERQVKQKIRKI- 54 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 KN KE ++V GC Q + E P V+ V+G Q + L K Sbjct: 55 -YKNDPNKE-----IIVVGCAVQLDPES-YSNIPGVSKVLGNQDKLKTENYL--LSNNKI 105 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 +V+ + + + + +++D ++ R AF+ +Q GCD CTFC + RG S ++ Sbjct: 106 LVNDNQASKSE---PALIDKFKDKSR---AFIEVQNGCDHSCTFCSITEARGNNRSVPIN 159 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++++ + + NG E+ G ++ + G L G+ + L ++ L RLR ++ Sbjct: 160 NIIEQIKIFVANGYQEVVFTGVDITDF-GTDLFGKPSLGLMVRRVLKDVPELKRLRLSSI 218 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++ D L+ + MP+LHL +QSG++ ILK M RRH+ + + +++S+R + Sbjct: 219 DVAEVDDELMDLIVNESRFMPHLHLSLQSGNNLILKRMKRRHSREQVIEFCHKVKSLRSN 278 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 IA +D I GFP ETD+ F+ T++L+++ +F YS R TP + M QV ENV+ Sbjct: 279 IAYGADIIAGFPTETDEMFQDTVNLLEETNTVYLHAFPYSKRKNTPAARM-PQVPENVRK 337 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 ER+ L+K + +F + +G VL+E++ +GR+ V SK Sbjct: 338 ERVKNLRKINKAMMSNFYQSLIGTKQSVLVEQNN------IGRAENFALVKFTSKIQ-AK 390 Query: 449 DIIKVRITDVKISTLYGELV 468 I+K I ++ L G ++ Sbjct: 391 SIVKATIIGMESGYLVGSII 410 >gi|329894523|ref|ZP_08270337.1| Ribosomal protein S12p Asp88 methylthiotransferase [gamma proteobacterium IMCC3088] gi|328923048|gb|EGG30373.1| Ribosomal protein S12p Asp88 methylthiotransferase [gamma proteobacterium IMCC3088] Length = 443 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 131/471 (27%), Positives = 209/471 (44%), Gaps = 64/471 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P FV S GC + DS R+ GY S + ADL+++NTC + A ++ Sbjct: 9 PTVGFV-SLGCPKALVDSERILTQLQQDGYAISGSYEGADLVIVNTCGFIDSAKQESLDA 67 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCV-AQAEGEEILRRSPIVNVVVGPQTY--------Y 134 +G +N R V+V GC+ A + + I P V V GP Y + Sbjct: 68 IGEALA-ENGR--------VIVTGCMGAGDDAKRIQDLHPKVLSVTGPAAYEDVMTAVRH 118 Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 +P+ E F V D + + A+L I EGC+ C+FC+ Sbjct: 119 HVPKPQEHNPFIDLVPDHGIKLTPRH----------------YAYLKISEGCNHRCSFCI 162 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGE 243 +P+ RG +SR V+ EA L+ GV E+ ++ Q+ +A W G+ + + Sbjct: 163 IPHLRGDLVSRPAGDVMREAEALVRGGVRELLVVSQDTSAYGVDLKYKTDFWDGRPVKTQ 222 Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 S+ L SL VR+ Y +P + + A G + +PYL +P Q S IL Sbjct: 223 MLALSEALGSLGV---WVRMHYVYPYPHVDNVIPLMAEGKI---LPYLDIPFQHASHDIL 276 Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 K+M R A +++DRI S R PD+++ S FIVGFPGET+ F+ +D + + Sbjct: 277 KAMKRPAAA---EKVLDRIHSWRKVCPDLSLRSTFIVGFPGETETQFQELLDFISEAQLD 333 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVL 417 F+YS G P + + V + VK ER + LQ+ + ++ + Q+I Sbjct: 334 NVGCFQYSSVEGAPANALANPVADEVKQDRWERFMALQQTISAERRAAKIGTEQQLIIDH 393 Query: 418 IEKHGKEKGKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGE 466 ++ G G+ G +P + VV ++ GD++ IT L+ E Sbjct: 394 VDSEGA-MGRTRGDAPEIDGVVHLPGYTDLRPGDLVTAEITGADEYDLWVE 443 >gi|323345215|ref|ZP_08085438.1| 2-methylthioadenine synthetase [Prevotella oralis ATCC 33269] gi|323093329|gb|EFZ35907.1| 2-methylthioadenine synthetase [Prevotella oralis ATCC 33269] Length = 452 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 110/399 (27%), Positives = 188/399 (47%), Gaps = 26/399 (6%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N ++ + G + AD+ ++NTC + E A K + R+ Sbjct: 18 GCKLNFSETSTFGKLLQEYGVTNAADGERADICLINTCSVTEVADHKCRQAIHRM----- 72 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 +++ VVV GC AQ E E + + V++V+G L + L A K + + Sbjct: 73 --VRDNPGAFVVVTGCYAQLESETVSKIEG-VDLVLGSNEKANLVQRLNDAWLEKSTISS 129 Query: 153 DYSVEDKFERLSIVDG--------GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + V +R FL +Q+GC+ FCT+C +PY RG + Sbjct: 130 ASGFNEHLHAFHSVKTKDIKTFAPSCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFSRN 189 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 +++ +V++AR+ + G EI L G N+ + G+ + F DL+ +L +++G+ R R Sbjct: 190 PTIASLVEQARQAVAEGGKEIVLTGVNIGDF---GVTTNE-RFIDLVKALDKVEGVKRYR 245 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P + D LI+ MP+ H+P+QSGSD +LK M+RR+ + I I+ Sbjct: 246 ISSLEPDLLDDELIEYCARSRAFMPHFHIPLQSGSDDVLKLMHRRYDRTLFAHKIQLIKE 305 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQ 381 PD I D +VG GE + F D + + Q F YS R GT ++ + + Sbjct: 306 KMPDAFIGVDVMVGSRGERPEYFEDCYDFLRSLDITQLHVFPYSERPGTAALSIPYVVAE 365 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 ++ ++++RLL L E+ +F +G EVL EK Sbjct: 366 KEKKLRSKRLLQLSD---EKMQAFYAKYIGTKAEVLFEK 401 >gi|302799254|ref|XP_002981386.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii] gi|300150926|gb|EFJ17574.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii] Length = 421 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 125/418 (29%), Positives = 195/418 (46%), Gaps = 44/418 (10%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FVK++GC N DS M + GY+ D+ADL ++NTC ++ + + + Sbjct: 2 IFVKTFGCAHNQSDSEYMAGQLLAYGYKISEDPDEADLWLINTCTVKAPSQSAMETL--- 58 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 IR K I +V+AGCV Q G + L+ V+VV G Q R+ E++E G Sbjct: 59 IRKGKAQTIP------LVIAGCVPQ--GSKDLKDLEGVSVV-GVQQIQRVVEVVEETLKG 109 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V S L +D RK + I GC CT+C + RG S Sbjct: 110 HEVKLLRRST------LPSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSYK 163 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSL-SEIK------ 258 + +V + ++ GV EI L ++ A+ R G D LL++L +E+ Sbjct: 164 IEALVKRLQGVVSEGVTEIWLSSEDTGAYGRDIGTD-----IPTLLHALVAELPRDRSVM 218 Query: 259 ---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 G+ Y H +++++ L + +LH+PVQSGSD +L +M R +T E+ Sbjct: 219 LRIGMTNPPYILQHLKEIAEILRHP-----CVYSFLHVPVQSGSDSVLAAMKREYTVAEF 273 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 +Q+ D + + PDI I++D I GFPGET D+F TM+L++ + Q ++ PR GTP Sbjct: 274 KQVADTLIELVPDIHIATDIICGFPGETSDEFDKTMELIEHYKFPQVHISQFYPRPGTPA 333 Query: 376 SNMLEQVDENVKA-ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 + M VK RLL L E ++D G++ V + + LVG + Sbjct: 334 ARMKRVPTAEVKKRSRLLT---NLFESFTPYSDM-EGKVYRVWVTDTAADGIHLVGHT 387 >gi|317051390|ref|YP_004112506.1| MiaB-like tRNA modifying enzyme YliG [Desulfurispirillum indicum S5] gi|316946474|gb|ADU65950.1| MiaB-like tRNA modifying enzyme YliG [Desulfurispirillum indicum S5] Length = 440 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 122/455 (26%), Positives = 219/455 (48%), Gaps = 33/455 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + S GC N+ D+ RM + + V+ AD+I +NTC A ++ S + Sbjct: 4 LYTISLGCSKNLVDTERMLARLLRRPVDPVDDPAAADIIFINTCGFILDAKDESISTI-- 61 Query: 87 IRNLKNSRIKEGGDLLV-VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-- 143 +++S+ K+ G V +VAGC+ +++ + P V++ + + +E Sbjct: 62 ---VEHSQFKQDGRCQVLIVAGCLVTLYEQQLRQELPEVDIFIDTKESS-----MESIGD 113 Query: 144 RFGKRVVDTDYSVEDKFERLS----IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + +R+V+ ++ +D E L + Y A+L I EGC CT+CV+P R Sbjct: 114 QLSRRLVN--FTPQDHLEALPGERLLTTPSY------MAYLKIAEGCSNTCTYCVIPRIR 165 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G S ++V EAR+L +GV E+ L+ Q+ + G L G++ + + LL L++I+ Sbjct: 166 GPYQSVPQEKLVSEARELAASGVRELVLISQDSTEY-GLDLYGKR-SLAPLLAELAKIEN 223 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L +R ++P D LI+ + Y+ +P Q S+ +LK MNR + ++ Sbjct: 224 LHWIRVLYTYPNHFDDELIETIAREPKICKYVDIPFQHMSNSVLKRMNRHIRVEQMENLV 283 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R+R P IAI + + GFPGET+ DF+A ++ V+++ + +F YS + Sbjct: 284 QRLRQRIPGIAIRTTMLTGFPGETEADFQALLEGVERVQFDHLGAFAYSDEELAASHKLP 343 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPW 434 +V+ + ER L + + N+ VGQ EVL+E +E +G+ ++P Sbjct: 344 GKVNPDTARERAEALMELQHSISLRRNEQRVGQTFEVLVEGISQETELLLQGRASFQAPE 403 Query: 435 LQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +++N + GD + VRI L G +V Sbjct: 404 VDGHILINDGTAHPGDFVMVRIEQALPYDLVGGMV 438 >gi|126662084|ref|ZP_01733083.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BAL38] gi|126625463|gb|EAZ96152.1| 2-methylthioadenine synthetase [Flavobacteria bacterium BAL38] Length = 433 Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 127/452 (28%), Positives = 216/452 (47%), Gaps = 43/452 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V + GC N YDS + + G + V ++ +++V+NTC + A E+ + + Sbjct: 13 VITLGCSKNTYDSEVLMGQLKANGKD-VAHEEEGNIVVINTCGFIDNAKEESVNTILEYV 71 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 + K+ + + V V GC+++ ++ + P V+ G LP LL + Sbjct: 72 DKKDQGLVDK----VFVTGCLSERYRPDLEKEIPDVDQYFGTT---ELPLLL-------K 117 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + DY E ERL+ Y A+L I EGCD+ C+FC +P RG +S+ + Sbjct: 118 ALGADYKHELLGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGKHVSQPIE 170 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL--VRLRY 265 ++V EA L GV E+ L+ Q++ + GLD +K ++LL +L++++G+ +RL Y Sbjct: 171 KLVKEAEGLAKKGVKELILIAQDLTYY---GLDLYKKRNLAELLENLAKVEGIEWIRLHY 227 Query: 266 T--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 + P D+ D + + + Y+ +P+Q SD ILKSM R T + +++ R Sbjct: 228 AFPSGFPMDVLDLMKREPK----ICNYIDIPLQHISDNILKSMKRGTTKEKTTKLLQEFR 283 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P +AI + IVG+PGET +DF D V ++ + + F YS T + + V Sbjct: 284 ERVPGMAIRTTLIVGYPGETQEDFEILRDWVQEMKFERLGCFTYSHEENTGAFVLEDDVP 343 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439 + VK R + + N +GQ + +I++ KE +GR SP + + V Sbjct: 344 QEVKQARAAEIMDLQSQISWDLNQEKIGQTFKCVIDR--KEGQYFIGRTEFDSPDVDNEV 401 Query: 440 LNSKNH---NIGDIIKVRITDVKISTLYGELV 468 L + GD + ++ITD LY E V Sbjct: 402 LVDASKFYLKTGDFVNLKITDATEFDLYAEPV 433 >gi|313825174|gb|EFS62888.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL063PA1] gi|314978454|gb|EFT22548.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL072PA2] gi|315088894|gb|EFT60870.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL072PA1] gi|327331966|gb|EGE73703.1| Fe-S oxidoreductase [Propionibacterium acnes HL096PA3] Length = 474 Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 133/465 (28%), Positives = 208/465 (44%), Gaps = 56/465 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + + G+ V+ +A+ +V+NTC E+A + L +L Sbjct: 7 SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145 K + I VV GC+A+ G E+ P + V+G Y RL +L+ Sbjct: 67 KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDDGSLE 122 Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179 +R + V+ R + G+ R+R G +A Sbjct: 123 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 182 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L + GCD+ C FC +P RG +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK Sbjct: 183 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL +L ++ GL +R + P ++ LI D ++PY L Q S Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 300 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+ M R A + IID IRS P+ + S+FI GFPGETD D D + + Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 360 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 A F YS GT + + VDE+V R RE D V Q E I Sbjct: 361 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 412 Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453 G+ ++GR+ P + V +++ ++GDI+ V Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457 >gi|34557848|ref|NP_907663.1| 2-methylthioadenine synthetase [Wolinella succinogenes DSM 1740] gi|34483566|emb|CAE10563.1| conserved hypothetical protein-2-methylthioadenine synthetase [Wolinella succinogenes] Length = 416 Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 121/433 (27%), Positives = 213/433 (49%), Gaps = 38/433 (8%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ +F K++GC+ N++D+ M Q +E + AD++V+N+C + A V S+ Sbjct: 4 PKVYF-KTFGCRTNLFDTQIMIKNL--QNFELTEIEESADIVVVNSCTVTNGADSGVRSY 60 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L R+++ EG V + GC GEEI + + V G ++ LL + Sbjct: 61 LHRLKS-------EGKR--VYLTGCGVLTRGEEIFTQE-LAFGVFGHSYKEQIDSLLSQ- 109 Query: 144 RFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 T +S + E + +++ + R AF+ +QEGCD C++C++P RG Sbjct: 110 -------KTRFSFKGDLEHIDSTVITEFIGKSR---AFVKVQEGCDFSCSYCIIPSVRGK 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260 S + ++V + L +G E L G NV ++ + GL+ K LL +LS+IKG+ Sbjct: 160 ARSLPVDRIVSQVEILAQHGFGEFVLTGTNVGSYGKESGLNVAK-----LLKALSQIKGV 214 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR + P + D + + +LH+ +Q S ++L+ MNRR+ A + + Sbjct: 215 KRLRLGSLEPSQI-DAEFMELLEEPFMARHLHIALQHTSPKMLQIMNRRNEAQGDLALFE 273 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+ + A+ +DFI+G PGE+++ ++ + +F YSPR GTP S M + Sbjct: 274 RL--AQKGYALGTDFILGHPGESEEVWKEAWERFVAFPLTHLHAFVYSPREGTPSSLMKD 331 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 ++ N+ ER+ LQ+++RE F G+ + VLIE +E G G + + + Sbjct: 332 RISGNIAKERMRILQERVRENNHHFRQK--GEKLWVLIESE-REGGLYQGLDQFFNRIEI 388 Query: 441 NSKNHNIGDIIKV 453 S + G ++V Sbjct: 389 RSSDSLAGRWLEV 401 >gi|327314071|ref|YP_004329508.1| tRNA methylthiotransferase YqeV [Prevotella denticola F0289] gi|326945694|gb|AEA21579.1| tRNA methylthiotransferase YqeV [Prevotella denticola F0289] Length = 450 Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 117/408 (28%), Positives = 189/408 (46%), Gaps = 23/408 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF+ + GC++N ++ ++ G + AD+ ++NTC + E A K + Sbjct: 13 RFY--TLGCKLNFSETSTFARTLYNMGVREAKKSEKADICLINTCSVTEVADHKCRQVIH 70 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---- 141 R+ +++ V+V GC AQ E + V++V+G L + L Sbjct: 71 RM-------VRQNPGAFVIVTGCYAQLESAAVAGIEG-VDLVLGSNEKADLIQYLSDAWN 122 Query: 142 RARFGKR--VVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 R GK +Y SV K + +R FL +Q+GC FCT+C +PY Sbjct: 123 RPEAGKEHGASPAEYHSVRTK--DIRSFQPSCSRGNRTRYFLKVQDGCSYFCTYCTIPYA 180 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG + +++ +V +A + G EI L G N+ + GE+ F DL+ +L ++ Sbjct: 181 RGFSRNPTIASLVSQAEEAAHEGGREIVLTGVNIGDF--GETTGER--FLDLVKALDRVE 236 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R R ++ P + D LI MP+ H+P+QSGSD +LK M+RR+ + Sbjct: 237 GIRRYRISSLEPDLIDDELIAYCAQSRAFMPHFHIPLQSGSDEVLKLMHRRYDTALFAHK 296 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I I+ + PD I D +VG GE + F + ++ + Q F YS R GT ++ Sbjct: 297 IRLIKEMMPDAFIGVDVMVGSRGERPEYFEDCYNFLESLPVTQLHVFPYSERPGTSALSI 356 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 VD+ K R L K E+ +F A +GQ +VL EK + K Sbjct: 357 PYVVDDREKKRRSHRLLKLSDEKTHAFYAAHIGQEADVLFEKAPRGKA 404 >gi|50842489|ref|YP_055716.1| radical SAM superfamily protein [Propionibacterium acnes KPA171202] gi|289425326|ref|ZP_06427103.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium acnes SK187] gi|295130566|ref|YP_003581229.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium acnes SK137] gi|81611817|sp|Q6A908|RIMO_PROAC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|50840091|gb|AAT82758.1| conserved protein, radical SAM superfamily protein [Propionibacterium acnes KPA171202] gi|289154304|gb|EFD02992.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium acnes SK187] gi|291375633|gb|ADD99487.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium acnes SK137] gi|332675406|gb|AEE72222.1| ribosomal protein S12 methylthiotransferase RimO [Propionibacterium acnes 266] Length = 481 Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 133/465 (28%), Positives = 208/465 (44%), Gaps = 56/465 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + + G+ V+ +A+ +V+NTC E+A + L +L Sbjct: 14 SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145 K + I VV GC+A+ G E+ P + V+G Y RL +L+ Sbjct: 74 KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 129 Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179 +R + V+ R + G+ R+R G +A Sbjct: 130 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 189 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L + GCD+ C FC +P RG +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK Sbjct: 190 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 248 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL +L ++ GL +R + P ++ LI D ++PY L Q S Sbjct: 249 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 307 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+ M R A + IID IRS P+ + S+FI GFPGETD D D + + Sbjct: 308 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 367 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 A F YS GT + + VDE+V R RE D V Q E I Sbjct: 368 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 419 Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453 G+ ++GR+ P + V +++ ++GDI+ V Sbjct: 420 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 464 >gi|74003948|ref|XP_545362.2| PREDICTED: similar to CDK5 regulatory subunit associated protein 1-like 1 isoform 1 [Canis familiaris] Length = 557 Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 119/430 (27%), Positives = 201/430 (46%), Gaps = 47/430 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GYE + +ADL +LN+C ++ A + F Sbjct: 63 QKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASEADLWLLNSCTVKNPAEDH---FR 119 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K +V+AGCV QA+ + + ++G Q R+ E++E Sbjct: 120 NSIKKAQEENKK------IVLAGCVPQAQPRQDYFKG---LSIIGVQQIDRVVEVVEETI 170 Query: 145 FGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G V + K + +D RK + +++ GC CT+C + RG Sbjct: 171 KGHSVRLLGQKKANGKRLGGARLDLPKIRKNPLIEIISVNTGCLNACTYCKTKHARGNLA 230 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI------ 257 S + ++V+ A++ GVCEI L ++ A+ G+ + LL+ L E+ Sbjct: 231 SYPIDELVERAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TNLPALLWKLVEVIPEGAM 286 Query: 258 --KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 G+ Y H +M+ L + + +LH+PVQS SD +L M R + ++ Sbjct: 287 LRLGMTNPPYILEHLEEMAKIL-----NHPRVYAFLHIPVQSASDTVLMEMKREYCVADF 341 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 ++++D ++ P I +++D I GFPGETD DF+ T+ LV+ + F ++ PR GTP Sbjct: 342 KRVVDFLKEKVPGITLATDIICGFPGETDQDFQETVKLVEDYKFPSLFINQFYPRPGTPA 401 Query: 376 SNMLEQVDENVKAERLLCL-------------QKKLREQ-QVSFNDACVGQIIEVLIEKH 421 + M+ QV V ER L + EQ V N +G++IEV I + Sbjct: 402 AKMV-QVPAQVIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMIEVDIYES 460 Query: 422 GKE--KGKLV 429 GK KG+ V Sbjct: 461 GKHFMKGQPV 470 >gi|224372902|ref|YP_002607274.1| hypothetical protein NAMH_0871 [Nautilia profundicola AmH] gi|223589641|gb|ACM93377.1| conserved hypothetical protein [Nautilia profundicola AmH] Length = 408 Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 113/438 (25%), Positives = 226/438 (51%), Gaps = 43/438 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F+K++GC+ N+YDS M+++ Q E V S ++AD+I++N+C + A + ++ Sbjct: 2 KIFIKTFGCRSNLYDSEVMKNIL-KQNAEIVYSENEADIIIVNSCTVTNFADRDLRQYIN 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143 + ++ KN +++ GC A +GEE+ ++ V V+G ++ E +++ A Sbjct: 61 KWQS-KN----------IMLTGCAAYTQGEELFKQGK-VKTVLG----HKYKETIDKYIA 104 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G + D D+ + + Y + + AF+ IQEGCD C +C++P RG Sbjct: 105 FQGVELGDFDFINQK-------IITEYTKAK---AFVKIQEGCDFECAYCIIPSVRG--H 152 Query: 204 SRSLSQ--VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 SRSL + ++++ + L NG+ E L G N+ ++ GK + T S+L+ +S+I+G+ Sbjct: 153 SRSLPENIILEQIKTLSQNGISEFVLTGINMGSY-GKDTN---TTLSELIEKISKIRGVK 208 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R + P + + LI+ + +L +LH+ +Q SDR+L+ M RR+ + ++ + Sbjct: 209 RIRLGSLEPSQLDERLIELTQN-GILEKHLHIALQHTSDRMLRIMKRRNRVKQTLELFEN 267 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 + IA+ +DFIVG PGET++ ++ + K F+++PR GT + + + Sbjct: 268 L--ANKGIALGTDFIVGHPGETEEIWQEALKNFKKYPLTHIHIFRFTPRDGTHSATLTQN 325 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V +V +R L + ++ +F + I + + + G G + +++ Sbjct: 326 VKGDVAKKRAKILDEIVKRNNYNFR---IKNKIPLTVHVENYKNGFYEGYDEFYNRMMIK 382 Query: 442 SKNHNIGDIIKVRITDVK 459 S + G+ +K+ ++K Sbjct: 383 SDKNIKGNWMKINDYEIK 400 >gi|281425611|ref|ZP_06256524.1| RNA modification enzyme, MiaB-family [Prevotella oris F0302] gi|281400198|gb|EFB31029.1| RNA modification enzyme, MiaB-family [Prevotella oris F0302] Length = 433 Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 124/452 (27%), Positives = 211/452 (46%), Gaps = 43/452 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS + F + GY V+ D ++ V+NTC E A E+ + + Sbjct: 10 TMGCSKNLVDSEHLMKQFEANGYHCVHDSKRPDGEIAVINTCGFIESAKEESINTILEFV 69 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--- 145 + KN EG + V GC++Q +E+ + P V+ G Y +L L +A Sbjct: 70 HAKN----EGRLKRLYVMGCLSQRYKDELEKEIPEVDKFYGKFNYKQLLTDLGKAEVPSC 125 Query: 146 -GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+R + T A++ I EGCD+ C +C +P G +S Sbjct: 126 NGRRHLTTPRHY---------------------AYVKIAEGCDRHCAYCAIPLITGKHVS 164 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ E R+L+ +GV E ++ Q + + G +DG++ +DL+ +++IKG+ +R Sbjct: 165 RPKEDILQEVRELVSDGVKEFQIIAQELTYY-GVDIDGQR-HIADLISDMADIKGVKWIR 222 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++P L+ + + YL + +Q S+ +L +M+R + E ++I +IR Sbjct: 223 LHYAYPNQFPLELLDVIREKPNVCKYLDIALQHISNHMLNAMHRHVSKEETIELIKKIRE 282 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVD 383 P I I + +VGFP ET++DF ++ V + + +F YS GT +N E V Sbjct: 283 AVPGIHIRTTLLVGFPDETEEDFNELVEFVKWAKFERMGAFAYSEEEGTYSANHYEDDVP 342 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439 VK RL L +E VG++++V+I++ KE +GR SP + V Sbjct: 343 AEVKQHRLDTLMAIQQEISADVEAEKVGKVMKVIIDR--KEGDYYIGRTEFCSPEVDPEV 400 Query: 440 LNSKNH---NIGDIIKVRITDVKISTLYGELV 468 L +G+ V ITD + LYG +V Sbjct: 401 LIPTAGVRLRVGNFYDVEITDSEEFDLYGHVV 432 >gi|171463614|ref|YP_001797727.1| MiaB-like tRNA modifying enzyme YliG [Polynucleobacter necessarius subsp. necessarius STIR1] gi|238066438|sp|B1XUT6|RIMO_POLNS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|171193152|gb|ACB44113.1| MiaB-like tRNA modifying enzyme YliG [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 452 Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 129/469 (27%), Positives = 216/469 (46%), Gaps = 59/469 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS + ++GY+ ADL+V+NTC + A E+ S +G Sbjct: 9 SLGCPKALVDSELILTQLSAEGYKTAKDYSGADLVVVNTCGFIDSAVEESLSAIGEA--- 65 Query: 91 KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146 + E G V+V GC+ A+G +++ P V V GP + +++ Sbjct: 66 ----LAENGK--VIVTGCLGARKNADGSDLIHSIHPKVLAVTGPHATDEVMQVIHLHLPK 119 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + TD R+ + Y A+L I EGC+ CTFC++P RG +SR Sbjct: 120 PHDLYTDLVPS---ARVRLTPKHY-------AYLKISEGCNHRCTFCIIPNLRGDLVSRP 169 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 + V+ E ++L ++GV E+ ++ Q+ +A W GK + K DL+ +L+ Sbjct: 170 IGDVLLEVKRLFESGVKELLVVSQDTSAYGVDIQYRTGFWDGKPV---KTKMFDLVNTLN 226 Query: 256 EI----KGLVRLRYTTSHPRDMSDCL-----IKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 +I + VRL Y +P + D L HG ++PYL +P+Q +LK M Sbjct: 227 QIAREHQAWVRLHYVYPYPH-VDDILPLMAEFAEHGY--GVLPYLDIPLQHAHPDVLKKM 283 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + + + I R PD+ I S FI GFPGET+ +F ++ +D+ +A F Sbjct: 284 KRPASGEKNLERILAWREACPDLVIRSTFIAGFPGETEGEFEYLLNFLDEAQIDRAGCFA 343 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK---HGK 423 YSP G + + V + ++ +R L K E V +G+ ++V+I++ HG Sbjct: 344 YSPVDGATANELANPVPDQIREDRRARLMAKAEEISVGRLAKKIGKRLQVIIDRVDDHGG 403 Query: 424 EKGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGE 466 G+ +G +P + +V SK + G+II+V + + L E Sbjct: 404 -IGRTIGDAPEIDGLVRVLPANKPSKRYRAGEIIRVTVISSQGHDLIAE 451 >gi|145589109|ref|YP_001155706.1| MiaB-like tRNA modifying enzyme YliG [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|238066599|sp|A4SXC8|RIMO_POLSQ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|145047515|gb|ABP34142.1| SSU ribosomal protein S12P methylthiotransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 452 Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 128/473 (27%), Positives = 213/473 (45%), Gaps = 67/473 (14%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS + ++GYE ADL+V+NTC + A E+ S +G Sbjct: 9 SLGCPKALVDSELILTQLSAEGYETAKDYSGADLVVVNTCGFIDSAVEESLSAIGEA--- 65 Query: 91 KNSRIKEGGDLLVVVAGCVA---QAEGEE-ILRRSPIVNVVVGPQT--------YYRLPE 138 + E G V+V GC+ A+G + IL P V V GP + LP+ Sbjct: 66 ----LAENGK--VIVTGCLGARKNADGSDLILSIHPKVLAVTGPHATDEVMQAIHLHLPK 119 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 D F L + G A+L I EGC+ CTFC++P Sbjct: 120 -----------------PHDPFTDL-VPPAGVKLTPKHYAYLKISEGCNHRCTFCIIPSL 161 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR + +V+ EA++L ++GV E+ ++ Q+ +A W GK + K Sbjct: 162 RGDLVSRPIGEVLLEAKRLFESGVKELLVVSQDTSAYGVDIQYRTGFWDGKPV---KTRM 218 Query: 248 SDLLYSLSEI----KGLVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301 DL+ +L++I + VRL Y +P D+ + + ++PYL +P+Q Sbjct: 219 FDLVNALNQIAREHQAWVRLHYVYPYPHVDDILPLMAEFSEHGYGVLPYLDIPLQHAHPD 278 Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361 +LK M R + + + I R PD+ I S FI GFPGET+++F ++ +++ + Sbjct: 279 VLKRMKRPASGEKNLERILAWREACPDLVIRSTFIAGFPGETEEEFEYLLNFLEEAQIDR 338 Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 A F YSP G + + V + V+ ER K + + +G+ ++VLI++ Sbjct: 339 AGCFAYSPVEGAKANELDNPVPDAVREERRARFMAKAEDISIKRLAKKIGKRVQVLIDRV 398 Query: 422 GKEK--GKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGE 466 + G+ +G +P + +V SK + G+II+ + + L E Sbjct: 399 DESGGIGRTIGDAPEIDGLVRVLPPTKPSKRYRTGEIIRATVISSQGHDLIAE 451 >gi|299140666|ref|ZP_07033804.1| 2-methylthioadenine synthetase [Prevotella oris C735] gi|298577632|gb|EFI49500.1| 2-methylthioadenine synthetase [Prevotella oris C735] Length = 446 Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 114/406 (28%), Positives = 191/406 (47%), Gaps = 31/406 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ M G ++AD+ ++NTC + + A K + R+ Sbjct: 16 TLGCKLNFSETSTFGKMLSDMGVVTAAKGEEADICLINTCSVTDVADHKCRQAIHRM--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E ++V GC AQ E E + + P V++V+G L + L A F R Sbjct: 73 ----VRENPGAFIIVTGCYAQLESERV-SKIPGVDLVLGSNEKANLIQYLNDA-FIDRTA 126 Query: 151 DTDYSVEDKFERLSIVD-----GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 T + K+ + D +R FL +Q+GC+ FCT+C +PY RG + Sbjct: 127 GT---AQHKYHAVRTKDIKTFQASCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFSRNP 183 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC--TFSDLLYSLSEIKGLVRL 263 S++ +V +A + G EI L G N+ + GE F DL+ +L +++G+ R Sbjct: 184 SIASLVAQAEEAAAEGGKEIVLTGVNIGHF------GETTHEKFIDLVKALDKVEGIKRF 237 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ P + D LI + MP+ H+P+QSGSD +LK M+R + + I+ I+ Sbjct: 238 RISSLEPDLIDDDLIAFCAESRAFMPHFHIPLQSGSDAVLKLMHRLYDTALFAHKIELIK 297 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LE 380 + PD I D +VG GE + F + + Q F YS R GT ++ +E Sbjct: 298 KLMPDAFIGVDVMVGSRGEKPEYFEDCYQFLAHLPVTQLHVFPYSERPGTSALSIPYVVE 357 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 + D+ ++++RLL L + F +G EVL EK + K Sbjct: 358 EKDKKLRSKRLLALSDT---KTQDFYQQFIGTEREVLFEKAPRGKA 400 >gi|291515240|emb|CBK64450.1| SSU ribosomal protein S12P methylthiotransferase [Alistipes shahii WAL 8301] Length = 432 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 123/459 (26%), Positives = 215/459 (46%), Gaps = 43/459 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82 ++ V + GC N DS + + GYE + D DA ++V+NTC A ++ Sbjct: 2 KKINVITLGCSKNTVDSEHLMARLAAAGYEVLFDSDRTDAKVVVINTCGFIGDAKQESID 61 Query: 83 FLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L+ + K+ G + + V GC+++ +E+ P V+ G +T+ + L Sbjct: 62 MI-----LRAAAAKQAGKIERLFVVGCLSERYADELRAEIPEVDDYFGARTWDGIVRALG 116 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + + + + A+L I EGC+ C +C +P RG Sbjct: 117 ASEDPALATERRLTTPKHY-----------------AYLKISEGCNWKCGYCAIPLIRGA 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 +S + ++ +EARKL GV E+ ++ Q+ + G L G + ++LL L I G+ Sbjct: 160 HVSVPMEELEEEARKLAGQGVRELMVIAQDTTYY-GIDLYGRR-MLAELLRRLCRIDGIE 217 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R ++P D +I+A + YL +P Q SD L SM+RRHT E ++I R Sbjct: 218 WIRLHYAYPAGFPDEVIEAMASEPKICKYLDIPFQHISDAQLASMHRRHTKAEAMELIGR 277 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLE 380 +R PD+A+ + +VG+PGET+ DF + V ++ + + F YS GT N+ + Sbjct: 278 LRGAIPDLALRTTLLVGYPGETEADFEELLAFVREVRFERLGVFPYSEEEGTWSAENLRD 337 Query: 381 QVDENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SP 433 + E +K AER++ LQ ++ + N VG+ V+I+ ++ VGR SP Sbjct: 338 DIPETIKQQRAERVMALQNEI---SLENNRRRVGRTERVIID--SRQGDWYVGRTQYDSP 392 Query: 434 WL-QSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 + Q +++ + + G V +T LYGE+ Sbjct: 393 EVDQEILIPASERRLLRGHFYDVTVTSAADYDLYGEIAA 431 >gi|241206754|ref|YP_002977850.1| MiaB-like tRNA modifying enzyme [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860644|gb|ACS58311.1| MiaB-like tRNA modifying enzyme [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 424 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 118/402 (29%), Positives = 185/402 (46%), Gaps = 34/402 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M+ G + I++NTC + +A + Sbjct: 6 VITFGCRLNTYESEVMKAQAEKAGLN--------NAILVNTCAVTGEAVRQARQ------ 51 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142 ++ ++V GC AQ E + + V+ V+G + +Y LP+ Sbjct: 52 -AIRRARRDNPHARIIVTGCAAQTEKQTFAAMAE-VDAVLGNEEKLTTASYRGLPDFGVS 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A RV D + + +DG V AF+ +Q GCD CTFC++PY RG Sbjct: 110 AEEKLRVNDIMSVKATAPQMVRHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS--LSEIKGL 260 S + VVD+ARKL+D G EI L G + ++ G D LL L +I + Sbjct: 164 RSVPMGAVVDQARKLVDGGYREIVLTGVDATSY---GCDLPGAPTLGLLAKTLLKQIPDI 220 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ + L+ D MP+LHL +Q G D ILK M RRH + + I+ Sbjct: 221 RRLRLSSIDSIEADAHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHLRADALRFIE 280 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R +RP+++ +D I GFP ET++ F + L ++ A F YS R GTP + M Sbjct: 281 DARRLRPEMSFGADMIAGFPTETEEMFDNAVRLAEEANIAHLHVFPYSLRPGTPAARM-P 339 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 Q+D ++ +R L+ S D +G +L+E +G Sbjct: 340 QLDRSLVKDRAAKLRAAGHRLHQSHLDRMIGTRQWLLVENNG 381 >gi|313772133|gb|EFS38099.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL074PA1] gi|313792172|gb|EFS40273.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL110PA1] gi|313801877|gb|EFS43111.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL110PA2] gi|313809997|gb|EFS47718.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL083PA1] gi|313812971|gb|EFS50685.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL025PA1] gi|313816023|gb|EFS53737.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL059PA1] gi|313818532|gb|EFS56246.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL046PA2] gi|313820299|gb|EFS58013.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL036PA1] gi|313822893|gb|EFS60607.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL036PA2] gi|313827747|gb|EFS65461.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL063PA2] gi|313830325|gb|EFS68039.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL007PA1] gi|313833700|gb|EFS71414.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL056PA1] gi|313838703|gb|EFS76417.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL086PA1] gi|314925185|gb|EFS89016.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL036PA3] gi|314960031|gb|EFT04133.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL002PA2] gi|314962830|gb|EFT06930.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL082PA1] gi|314967803|gb|EFT11902.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL037PA1] gi|314973330|gb|EFT17426.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL053PA1] gi|314976008|gb|EFT20103.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL045PA1] gi|314983972|gb|EFT28064.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL005PA1] gi|314988155|gb|EFT32246.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL005PA2] gi|314989959|gb|EFT34050.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL005PA3] gi|315078046|gb|EFT50097.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL053PA2] gi|315084343|gb|EFT56319.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL027PA2] gi|315085685|gb|EFT57661.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL002PA3] gi|315096245|gb|EFT68221.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL038PA1] gi|315098507|gb|EFT70483.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL059PA2] gi|315105412|gb|EFT77388.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL030PA1] gi|315108356|gb|EFT80332.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL030PA2] gi|327326158|gb|EGE67948.1| Fe-S oxidoreductase [Propionibacterium acnes HL096PA2] gi|327443168|gb|EGE89822.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL013PA2] gi|327445955|gb|EGE92609.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL043PA2] gi|327448066|gb|EGE94720.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL043PA1] gi|327453111|gb|EGE99765.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL092PA1] gi|328753499|gb|EGF67115.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL020PA1] gi|328760620|gb|EGF74187.1| Fe-S oxidoreductase [Propionibacterium acnes HL099PA1] Length = 474 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 133/465 (28%), Positives = 208/465 (44%), Gaps = 56/465 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + + G+ V+ +A+ +V+NTC E+A + L +L Sbjct: 7 SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145 K + I VV GC+A+ G E+ P + V+G Y RL +L+ Sbjct: 67 KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122 Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179 +R + V+ R + G+ R+R G +A Sbjct: 123 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 182 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L + GCD+ C FC +P RG +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK Sbjct: 183 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL +L ++ GL +R + P ++ LI D ++PY L Q S Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 300 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+ M R A + IID IRS P+ + S+FI GFPGETD D D + + Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 360 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 A F YS GT + + VDE+V R RE D V Q E I Sbjct: 361 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 412 Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453 G+ ++GR+ P + V +++ ++GDI+ V Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457 >gi|297626501|ref|YP_003688264.1| 2-methylthioadenine synthetase MiaB protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922266|emb|CBL56838.1| 2-methylthioadenine synthetase MiaB protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 477 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 134/483 (27%), Positives = 210/483 (43%), Gaps = 53/483 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + S GC N DS + + G+ V+ D AD +++NTC E+A + + Sbjct: 4 KKVHLISLGCARNDVDSEELAGRLEAGGFSLVDEPDSADALIVNTCGFVEQAKKDSIDTI 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK+S GG VV GC+AQ G E+ P + V+G Y + E L Sbjct: 64 LAAADLKDS----GGPRTVVAVGCLAQRYGAELADSLPEADAVLGFDDYTDIAERLRTVM 119 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--------------------------- 177 G V +V D+ L I +R+R V Sbjct: 120 AGGTV--QPPTVMDRRTLLPIAPIERHRRRAVPGHQGELPTGIAPASGPRVPRRRLDNAP 177 Query: 178 -AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236 A L I GCD+ C FC +P RG +SR ++V+EA L+ GV EI L+ +N +++ Sbjct: 178 WAPLKIASGCDRRCAFCAIPSFRGAYLSRDADEIVEEAGWLVGQGVREIMLVSENSSSY- 236 Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 GK L + LL LS + GL +R + P ++ L+ ++PY L Q Sbjct: 237 GKDL-ADLRALESLLKRLSALDGLDWIRVSYLQPAELRSSLVDVMTSTPKVLPYFDLSFQ 295 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 S +L+ M R + +ID IR P I S+ IVGFPGET +D D + + Sbjct: 296 HASAPLLRRMRRFGDPESFLGLIDSIRQRAPQAGIRSNVIVGFPGETSNDVDVLADFLAR 355 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQV-DENVKA--ERLLCLQKKLREQQVSFNDACVGQI 413 F YS GT + + + V E ++A ER+ L L +++ + VGQ Sbjct: 356 ARLDAVGVFSYSDEDGTAAAELPDHVAAEEIEARHERIADLANVLCDERAAQR---VGQR 412 Query: 414 IEVLIEKHGKEKGKLVGRSP-------WLQSVVLNSKNH--NIGDIIKVRITDVKISTLY 464 ++VL+E G E ++ GR+ +V++ H GD++ + D L Sbjct: 413 VQVLVE--GVEGSQVTGRAAHQGPDVDGTTTVLVGQGRHMPTPGDMVSASVIDTVGVDLT 470 Query: 465 GEL 467 E+ Sbjct: 471 AEI 473 >gi|282881454|ref|ZP_06290128.1| MiaB-like protein [Prevotella timonensis CRIS 5C-B1] gi|281304680|gb|EFA96766.1| MiaB-like protein [Prevotella timonensis CRIS 5C-B1] Length = 436 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 123/449 (27%), Positives = 219/449 (48%), Gaps = 37/449 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK-VYSFLGRI 87 + GC N+ DS ++ +F GY + + D ++ V+NTC E A E+ + + L + Sbjct: 13 TMGCSKNLVDSEKLMRLFEDNGYRCTHDSESPDGEIAVINTCGFIESAKEESINTILSFV 72 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 K R+K+ + V GC+++ +E+ P V+ G Y +L + GK Sbjct: 73 EAKKEGRLKK-----LFVMGCLSERYKDELENEIPEVDKFYGKFNYKQL-----LSDLGK 122 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + + + + R Y A+L I EGCD+ C +C +P G SR Sbjct: 123 SEISSCHGL-----RHLTTPRHY-------AYLKISEGCDRQCAYCAIPLMTGKHKSRLK 170 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++ E + ++ GV E ++ Q + + G+ +DG K +DL+ +++EI+G+ +R Sbjct: 171 LDILTEVKDMVAQGVKEFQVIAQELTYY-GRDIDG-KQHIADLISAIAEIEGVQWIRLHY 228 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P L+ + + YL + +Q SD +L M+R T E +I IR+ P Sbjct: 229 AYPNQFPLELLDVIRENKKVCNYLDIALQHISDGVLSRMHRHVTKLETLNLIKTIRAKAP 288 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENV 386 I + + +VGFPGET+++F+ +D V + + +F YS GT G+ + + V V Sbjct: 289 GIHLRTTLMVGFPGETEEEFQELLDFVRWARFERMGAFMYSEEEGTYGALHYQDDVSLAV 348 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ-----SVVLN 441 K +RL L +E +G+ ++V+I++ KE +GR+ + V+++ Sbjct: 349 KQQRLDQLMAVQQEISAEIEAEKIGKTMKVIIDR--KENDYYIGRTEYCSPDVDPEVLIH 406 Query: 442 S--KNHNIGDIIKVRITDVKISTLYGELV 468 S KN IG +V+ITD + LYGE+V Sbjct: 407 SAGKNLEIGAFYQVKITDAEEFDLYGEVV 435 >gi|18409989|ref|NP_565035.1| radical SAM domain-containing protein / TRAM domain-containing protein [Arabidopsis thaliana] gi|12322201|gb|AAG51137.1|AC069273_8 unknown protein [Arabidopsis thaliana] gi|14194137|gb|AAK56263.1|AF367274_1 At1g72090/F28P5_4 [Arabidopsis thaliana] gi|27363418|gb|AAO11628.1| At1g72090/F28P5_4 [Arabidopsis thaliana] gi|332197151|gb|AEE35272.1| Methylthiotransferase [Arabidopsis thaliana] Length = 601 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 126/452 (27%), Positives = 211/452 (46%), Gaps = 36/452 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q ++K++GC N DS M + GY ++ADL ++NTC ++ + + + + Sbjct: 64 QTIYIKTFGCSHNQSDSEYMAGQLSAFGYALTEVPEEADLWLINTCTVKSPSQSAMSTLI 123 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R R+ G +V+AGCV Q G L+ V+VV G Q R+ E++E Sbjct: 124 TRGRS---------GKKPLVIAGCVPQ--GSRDLKELEGVSVV-GVQQIDRVVEIVEETL 171 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G V + L +D R+ L I GC CT+C + RG S Sbjct: 172 KGHEVRLLTR------KTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGS 225 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL--- 260 ++ +V+ R +I GV EI L ++ A+ R G++ LL ++ +K L Sbjct: 226 YTVDSLVERVRTVISEGVKEIWLSSEDTGAYGRDIGVN-----LPILLNAI--VKELPSD 278 Query: 261 --VRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 LR ++P + + L + L + +LH+PVQSGSD +L +MNR +TA E+R Sbjct: 279 QSTMLRIGMTNPPFILEHLKEIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFR 338 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++D + + P + I++D I GFPGETD+DF T++L+ + Q ++ PR GTP + Sbjct: 339 TVVDTLTELVPGMQIATDIICGFPGETDEDFSQTVELIKDYKFPQVHISQFYPRPGTPAA 398 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 M ++V + +R L C + + I + + LVG + Sbjct: 399 KM-KKVQSKIVKQRSRELTSVFEAFAPYTGMECREE--RIWITEVATDGIHLVGHTKGYV 455 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V++ +G RIT V +++GE++ Sbjct: 456 QVLVTGPESMLGTSAMARITSVGRWSVFGEVI 487 >gi|21224098|ref|NP_629877.1| hypothetical protein SCO5752 [Streptomyces coelicolor A3(2)] gi|289768712|ref|ZP_06528090.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces lividans TK24] gi|81345581|sp|O86812|RIMO_STRCO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|3294240|emb|CAA19853.1| conserved hypothetical protein SC7C7.07 [Streptomyces coelicolor A3(2)] gi|289698911|gb|EFD66340.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces lividans TK24] Length = 493 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 121/421 (28%), Positives = 189/421 (44%), Gaps = 37/421 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N DS + + G++ V+ ++AD+ V+NTC E A + L +L Sbjct: 11 TLGCARNEVDSEELAGRLEADGWKLVDDAEEADVAVVNTCGFVEAAKKDSVDALLEANDL 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---------- 140 K G VV GC+A+ G+E+ P + V+G Y + + L Sbjct: 71 KG----HGRTQAVVAVGCMAERYGKELADALPEADGVLGFDDYADISDRLQTILNGGIHA 126 Query: 141 ----------------ERARFGKRVVDTDYSVEDKFERLSIVDGGYN--RKR---GVTAF 179 ER G V + D E ++ G R+R A Sbjct: 127 AHTPRDRRKLLPISPAERQEAGAAVALPGHGPTDLPEGVAPASGPRAPLRRRLDGSPVAS 186 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 + + GCD+ C+FC +P RG ISR S V++E R L + GV EI L+ +N N GK Sbjct: 187 VKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEIMLVSEN-NTSYGKD 245 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL +L+E+ G+ R+R + P +M LI + + PY L Q + Sbjct: 246 L-GDIRLLESLLPNLAEVDGIERVRVSYLQPAEMRPGLIDVLTSTEKVAPYFDLSFQHSA 304 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L++M R + +++D IRS P+ + S+FIVGFPGE++ D ++ Sbjct: 305 PNVLRAMRRFGDTDRFLELLDTIRSKAPEAGVRSNFIVGFPGESEADLAELERFLNHARL 364 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 F YS GT + +++DE+V AERL + + E D VG + VL+E Sbjct: 365 DAIGVFGYSDEEGTEAATYGDKLDEDVVAERLARVSRLAEELVSQRADERVGATVRVLVE 424 Query: 420 K 420 Sbjct: 425 S 425 >gi|134102329|ref|YP_001107990.1| hypothetical protein SACE_5882 [Saccharopolyspora erythraea NRRL 2338] gi|238066583|sp|A4FLZ0|RIMO_SACEN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|133914952|emb|CAM05065.1| hypothetical protein SACE_5882 [Saccharopolyspora erythraea NRRL 2338] Length = 484 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 120/463 (25%), Positives = 208/463 (44%), Gaps = 47/463 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + + GC N DS + +G++ ++ AD++V+NTC E A + L Sbjct: 8 RRVAMVTLGCARNEVDSEELAGNLHQRGWDLIDDESSADVVVVNTCGFVESAKKDSVDTL 67 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + VV GC+A+ G E+ P + V+G Y L E L+ Sbjct: 68 LAASDTGAK---------VVAVGCMAERYGAELAEHLPEADAVLGFDHYGNLAERLDDVL 118 Query: 145 FGKRVVDTDYSVEDKFERLSIVD-----------------GGYNRKRGVT---------A 178 G+ + + +D+ + L I G RG+ A Sbjct: 119 AGRAI--QPHQPQDRRKMLPITPVARPAAAAASEVAVPGHGWVPSTRGIARRRLDDSPLA 176 Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238 L + GCD+ C+FC +P RG +SR +V+ EA L + G E+ L+ +N ++ GK Sbjct: 177 ALKLASGCDRRCSFCAIPSFRGSFLSRQPEEVLGEAAWLAEQGAKELFLVSENSTSY-GK 235 Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 L + LL L+ I G+ R+R + P + L++A + PY L Q Sbjct: 236 DLSDPRA-LETLLPRLAGIDGVDRVRVSYLQPAETRPGLVRAIATTPGVAPYFDLSFQHS 294 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 S+++L+ M R + + +I++IR + P+ I S+ IVGFPGET++DF D + + Sbjct: 295 SEKVLRRMRRFGSTESFLALIEQIRELAPEAGIRSNVIVGFPGETEEDFEELQDFLTRAR 354 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 F YS GT + ++D +V A R+ + E + VG + VL+ Sbjct: 355 LDAVGVFGYSDEDGTEAAGFDGKLDADVVAARVEQVSALADELVAQRAEDRVGTEVRVLV 414 Query: 419 EKHGKEKGKLVGRS----PWL--QSVVLNSKNHNIGDIIKVRI 455 E+ E G++ GR+ P + + VV+++ +G+++ R+ Sbjct: 415 ER--DEDGEVTGRAEHQGPEVDGECVVVDAGGAGVGEVVHCRV 455 >gi|89898549|ref|YP_515659.1| hypothetical protein CF0742 [Chlamydophila felis Fe/C-56] gi|89331921|dbj|BAE81514.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56] Length = 421 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 124/448 (27%), Positives = 213/448 (47%), Gaps = 54/448 (12%) Query: 33 GCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 GC++N Y+ D GY E ++ DL ++NTC + A R+ Sbjct: 16 GCRVNQYEIQSYRDQLNFLGYREIIDPEVPCDLCIVNTCAVTGSAESSG-------RHAV 68 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGE---EILRRSPIVNVVVGPQTYYRL-PELLERARFGK 147 ++ D +VV GC+ +++ E + R+ +V+ Q ++ P + + F Sbjct: 69 RQVCRQNPDAFLVVTGCLGESDKEFFNSLGRQCLLVSNKEKHQLMEKIFPAIQDLPEFRI 128 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 R FE G +R AF+ +Q+GC+ FC++C++PY RG SR Sbjct: 129 R----------SFE-------GKSR-----AFIKVQDGCNSFCSYCIIPYLRGRSRSRPA 166 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +V++E ++ G E+ + G NV ++ +G + + L+ + EI+G+ R+R ++ Sbjct: 167 REVLEEISGIVSQGYREVVIAGINVGDYQDEGH-----SLAHLIRRVDEIEGIERIRISS 221 Query: 268 SHPRDMSDCLIKAHGDLDVLMP------YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 P D+ + L DVL+ HL +QSGS+ ILK MNR+++ ++ +D Sbjct: 222 IDPEDVQEDL------RDVLLSGKHTCHSSHLVLQSGSNAILKRMNRKYSRGDFLDCVDA 275 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +RS P A ++D IVGFPGETD DF T+ +++ +G+ + F +SPR T Q Sbjct: 276 LRSGDPKYAFTTDVIVGFPGETDSDFEDTLRVIEDVGFIKVHIFPFSPRERTKAYTFSSQ 335 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL- 440 + +V ER L RE +G+ + VL+E+ ++G G SP+ V Sbjct: 336 LPPSVINERKKHLAHVAREVARREMTRRIGETLSVLVER--IDEGVAYGHSPYFDMVGFP 393 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + N + + V I V+ L G+ V Sbjct: 394 ATANVAVNTLQDVCIESVEDDVLKGKRV 421 >gi|315080671|gb|EFT52647.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL078PA1] Length = 474 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 133/465 (28%), Positives = 208/465 (44%), Gaps = 56/465 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + + G+ V+ +A+ +V+NTC E+A + L +L Sbjct: 7 SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145 K + I VV GC+A+ G E+ P + V+G Y RL +L+ Sbjct: 67 KGNGITTS----VVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122 Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179 +R + V+ R + G+ R+R G +A Sbjct: 123 THVPRDRRTLLPISPVDRPTARAEVSVPGHGTAPDLSASVTPDSGPRATRRRLGTGPSAP 182 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L + GCD+ C FC +P RG +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK Sbjct: 183 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL +L ++ GL +R + P ++ LI D ++PY L Q S Sbjct: 242 L-GDLRLLEKLLVNLDQVDGLEWIRVSYLQPAELRPGLIDTILATDKVVPYFDLSFQHAS 300 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+ M R A + IID IRS P+ + S+FI GFPGETD D D + + Sbjct: 301 GPLLRRMRRFGDAESFLNIIDSIRSRCPEAGLRSNFITGFPGETDADVAVLADFLQRARL 360 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 A F YS GT + + VDE+V R RE D V Q E I Sbjct: 361 DVAGVFAYSDEEGTEAAGLDGHVDEDVVTAR--------REDLADLTDELVSQRAEDRIG 412 Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453 G+ ++GR+ P + V +++ ++GDI+ V Sbjct: 413 TPGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457 >gi|296114905|ref|ZP_06833553.1| MiaB-like tRNA modifying enzyme [Gluconacetobacter hansenii ATCC 23769] gi|295978611|gb|EFG85341.1| MiaB-like tRNA modifying enzyme [Gluconacetobacter hansenii ATCC 23769] Length = 416 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 106/351 (30%), Positives = 167/351 (47%), Gaps = 26/351 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI- 87 + ++GC++N Y+S M R ++ +++++NTC + +A + + R Sbjct: 6 ILTFGCRLNTYESEVM----------RTHAAGLDNVVIVNTCAVTAEAERQARQAVRRAH 55 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 R+ ++RI VV GC AQ + + P V V+G + E A Sbjct: 56 RDRPDARI--------VVTGCAAQIDPDR-WAALPGVTRVLGNREKLAAESWSEAALSQG 106 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 V + + L G R AF+ +Q+GCD CTFC++P+ RG S + Sbjct: 107 NAVSDIMAARESAPHLVTEFAGRTR-----AFVEVQQGCDHRCTFCIIPFGRGPSRSVPV 161 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 VV++ R L+ +G E+ + G ++ +W G L G+ L+ + L RLR ++ Sbjct: 162 GVVVEQVRALVASGYREVVMTGVDITSW-GGDLPGQPSLGQLCRRLLALVPELERLRLSS 220 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++ D L + MPYLHL +Q+GSD ILK M RRH ++ +I R R +RP Sbjct: 221 VDPVEIDDGLWQLLEHEPRFMPYLHLSLQAGSDMILKRMKRRHLTHDVAAVIARARGLRP 280 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 DI I +D I GFP E + F T+D + F YS R GTP + M Sbjct: 281 DIGIGADVIAGFPTEDEALFNETLDFIAGQALPYLHVFPYSERPGTPAARM 331 >gi|168060037|ref|XP_001782005.1| predicted protein [Physcomitrella patens subsp. patens] gi|162666496|gb|EDQ53148.1| predicted protein [Physcomitrella patens subsp. patens] Length = 489 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 130/448 (29%), Positives = 210/448 (46%), Gaps = 28/448 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q ++K++GC N DS M GY ++ D ADL ++NTC ++ + + + + Sbjct: 65 QTVYLKTFGCSHNQSDSEYMAGQLSDYGYSVTDAPDGADLWLINTCTVKNPSQSAMENLI 124 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + K+ G LVV AGCV Q G++ L+ V+VV G Q R+ E++E Sbjct: 125 --------RKGKDAGKPLVV-AGCVPQ--GDKNLKDLEGVSVV-GVQQIDRVVEVVEETL 172 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G V S L +D RK + I GC CT+C + RG S Sbjct: 173 KGHEVRLLRRS------SLPSLDLPKVRKNKFVEIVPINVGCLGACTYCKTKHARGHLGS 226 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 L+ +VD + ++ GV EI L ++ A+ G L + T + L + LR Sbjct: 227 YPLASLVDRVKGVVAEGVKEIWLSSEDTGAY-GIDLGTDLPTLLNALVDVLPKDRSCMLR 285 Query: 265 YTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 ++P + L I A + + +LH+PVQSGSD +L +MNR +T +++++ D + Sbjct: 286 IGMTNPPYILKHLESIAAILNHPCVYSFLHVPVQSGSDNVLCAMNREYTVSDFKKVADTL 345 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + PD+ +++D I GFPGET +DF ATM LV + ++Q ++ PR GTP + M Sbjct: 346 LRLVPDLHLATDIICGFPGETSEDFEATMALVKEYKFSQLHISQFYPRPGTPAARMKRVP 405 Query: 383 DENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 VK ++L SFN G+ V + + LVG + V+L Sbjct: 406 TAEVKKR-----SRELTTLFESFNPYSGMEGKEQRVWVTDVASDGVHLVGHNKSYVQVLL 460 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 +G + V+I V ++ GE++ Sbjct: 461 PEAEGLMGSSVDVKIISVNRWSVMGEVL 488 >gi|300691379|ref|YP_003752374.1| 2-methylthioadenine synthetase [Ralstonia solanacearum PSI07] gi|299078439|emb|CBJ51091.1| putative 2-methylthioadenine synthetase [Ralstonia solanacearum PSI07] Length = 459 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 134/477 (28%), Positives = 223/477 (46%), Gaps = 65/477 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GYE + ADL+V+NTC ++A ++ Sbjct: 15 PRVGFV-SLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDA 73 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAE---GEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ + G +I+ P V V GP + L E+ Sbjct: 74 IGEA-------LAENGK--VIVTGCLGAKKDTAGNDIITSVHPKVLAVTGP---HALGEV 121 Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 +E V T D F L + G A+L I EGC+ C+FC++P Sbjct: 122 ME-------AVHTHLPKPHDPFIDL-VPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 173 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR +++V+ EA L+ GV E+ ++ Q+ +A W G+ L K Sbjct: 174 RGDLVSRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPL---KTRM 230 Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 ++L+ +L E+ VRL Y +P + A G + +PYL +P+Q +L Sbjct: 231 TELVGALGELAAQYGAWVRLHYVYPYPSVDEVMPLMAEGKV---LPYLDVPLQHAHPEVL 287 Query: 304 KSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 K M R A + +DRIR+ R P++ I S FI GFPGET+++F+ +D + + Sbjct: 288 KRMKRPANA---EKTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFISEAELD 344 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + F YSP G +++ + + V+ ER + VG+ + VL+++ Sbjct: 345 RVGCFAYSPVEGATANDLPGALPDAVREERRARFMEVAERVSARRLQRKVGKTLRVLVDE 404 Query: 421 HGKEKGKLVGRS----PWLQSVVLNS------KNHNIGDIIKVRITDVKISTLYGEL 467 ++ G +GRS P + +V + K + GD + V+IT L+GE+ Sbjct: 405 VNQDGG--IGRSSADAPEIDGLVYIAPPSKPYKRYKAGDFVSVKITGADGHDLWGEV 459 >gi|120601285|ref|YP_965685.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio vulgaris DP4] gi|238065336|sp|A1V9Z2|RIMO_DESVV RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|120561514|gb|ABM27258.1| SSU ribosomal protein S12P methylthiotransferase [Desulfovibrio vulgaris DP4] Length = 430 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 129/448 (28%), Positives = 205/448 (45%), Gaps = 49/448 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87 S GC N D+ E + S G + V + AD++++NTC I E V + + I Sbjct: 8 SLGCPKNRVDT---EHLLGSLGVAVQPVEHLSRADVVLINTCGFILPAVEESVRTIVETI 64 Query: 88 RNLKNSRIKEGGDLLVVVAGC-VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +L R + L+ VAGC V + +E+ P V+V + Q P +L A Sbjct: 65 DDLSGLRKRP----LLAVAGCLVGRYGAKELASELPEVDVWLPNQDITAWPAMLAHAL-- 118 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K E ++ G A+L I +GC C+FC +P RG S Sbjct: 119 ------------KLEG-AVTPGRLLSTGPSYAWLKISDGCRHNCSFCTIPSIRGGHRSTP 165 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265 + EAR L+ GV E+ L+ Q+V AW G D G + LL L + GL RLR Sbjct: 166 ADVLEREARDLVAQGVRELVLVAQDVTAW---GEDIGAPHGLATLLERLLPVPGLARLRL 222 Query: 266 TTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P ++ L+ D L+PY +P+Q IL M R A + R++++R+R Sbjct: 223 MYLYPAGLTRELLGFMRDAGAPLVPYFDVPLQHAHPDILSRMGRPF-ARDPRRVVERVRD 281 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD A+ + IVGFPGETD+ + A V++ + F Y GTP + M EQV++ Sbjct: 282 FFPDAALRTSLIVGFPGETDEHYAALTSFVEETRFTHMGVFAYRAEEGTPAAEMPEQVED 341 Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 VK R L+ +Q ++ E+ ++ ++ Q++ + H + G GR+ W Q+ ++ Sbjct: 342 RVKEWRRDALMEVQAEISEELLAVHEGTRQQVL--VDAPHEEWPGLHTGRT-WFQAPEID 398 Query: 442 SKNHNIG-----------DIIKVRITDV 458 + G DI++ R D+ Sbjct: 399 GITYVSGPGVEPGALVEADIVETRTYDL 426 >gi|302829076|ref|XP_002946105.1| hypothetical protein VOLCADRAFT_127348 [Volvox carteri f. nagariensis] gi|300268920|gb|EFJ53100.1| hypothetical protein VOLCADRAFT_127348 [Volvox carteri f. nagariensis] Length = 529 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 120/446 (26%), Positives = 207/446 (46%), Gaps = 53/446 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC NV D + G+ + + +D I++NTC E A + + +L Sbjct: 49 SLGCPKNVVDGEVLLGDLTRAGFSVTDDHEQSDAIIVNTCAFVEDAKSESLEAIVEAASL 108 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA------- 143 ++G VV+ GC+AQ +++ P ++VVG Q Y L L+R+ Sbjct: 109 N----EDGKRRKVVITGCLAQRYSDQLASDLPEADLVVGFQKYGNLAASLQRSMGLEPTR 164 Query: 144 ---------RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR---GVT-------------- 177 ++ + + D R + + G + +R G + Sbjct: 165 EALELATAAEAQQQSQEEGVTSADAGARGEVAEAGTSGQRVQVGASTVPFRPEWDRYRLT 224 Query: 178 ----AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233 A+L + EGC+ CTFC +P RG S+ V+DEAR L+ NGV E+ L+ ++ N Sbjct: 225 PRHSAYLRVAEGCNHACTFCAIPGFRGKFRSKPWQAVLDEARHLVANGVKELNLIAEDTN 284 Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK--AHGDLDVLMPYL 291 + DG + LL LS+++GL +R ++P +D LI A + YL Sbjct: 285 QYGMDRRDGRD--LAQLLRELSQLEGLHWIRILYAYPSYFNDALIDEIATNPKARVCKYL 342 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 +P+Q S+ L +MNR + + + + P +A+ + FI GFPGETD R + Sbjct: 343 DMPLQHISNLTLLAMNRPPREHTLKLLTTLRTRI-PSLALRTTFISGFPGETDQQHRELV 401 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDA 408 + V + + F +S GTP +++ +QV + V+ R L+ LQ+++ E+ + + Sbjct: 402 EFVKTFKFERMGCFAFSEEDGTPAASLPDQVPQRVRERRRDELISLQQRIGEE---WAEG 458 Query: 409 CVGQIIEVLIEKHGKEKGKLVGRSPW 434 VG+ +EVL+E + + L+GR+ W Sbjct: 459 LVGREVEVLVEGYNDDDW-LIGRTQW 483 >gi|285017767|ref|YP_003375478.1| hypothetical protein XALc_0973 [Xanthomonas albilineans GPE PC73] gi|283472985|emb|CBA15490.1| hypothetical protein XALc_0973 [Xanthomonas albilineans] Length = 413 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 117/383 (30%), Positives = 180/383 (46%), Gaps = 30/383 (7%) Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162 V+V GC+ + E+I P V V GPQ Y + E + A + D + + Sbjct: 25 VIVTGCLGK-RSEQIRAAYPDVLAVSGPQDYQSVMEAVHAALPPRH--DPFVDLLPRGRG 81 Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222 S D G A+L I EGC+ C+FC++P RG +SR + +V+ EA +L+ GV Sbjct: 82 SSEDDIGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSRPVDEVLREAERLVKGGV 141 Query: 223 CEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271 E+ ++ Q+ +A WRG+ + + L L+E+ RL Y +P Sbjct: 142 RELLIVSQDTSAYGVDLKYAEREWRGRAY---QTRMTALCEGLAELGAWTRLHYVYPYPH 198 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 + A G L +PYL +P Q S RILK M R + + R R++ PDI + Sbjct: 199 VDDVIPLMAEGKL---LPYLDIPFQHASPRILKLMKRPGAVERTLERVQRWRALCPDITL 255 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391 S FIVGFPGETD +F ++ +D + +F YSP G + + + V E +K ERL Sbjct: 256 RSTFIVGFPGETDAEFEQLLEFLDAAQLDRVGAFAYSPVEGASANALPDPVPEALKQERL 315 Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNH 445 + E + DA +G + E L++ E V RS P + +V N Sbjct: 316 ARFMARQAEISAARLDAKIGSVQECLVDL--LEDSIAVARSKADAPEIDGLVHIQNGAES 373 Query: 446 NI--GDIIKVRITDVKISTLYGE 466 + GD+++V ITD L+G+ Sbjct: 374 GLKPGDLVQVEITDSDEHDLFGD 396 >gi|154175462|ref|YP_001408235.1| hypothetical protein CCV52592_1067 [Campylobacter curvus 525.92] gi|112802784|gb|EAU00128.1| conserved hypothetical protein [Campylobacter curvus 525.92] Length = 416 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 112/396 (28%), Positives = 200/396 (50%), Gaps = 29/396 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ F K++GC+ N+YD+ M+ + + YE N + AD++V+N+C + A V Sbjct: 3 QKIFFKTFGCRTNIYDTELMKS--YVKDYEITNDEEIADVVVINSCTVTNSADSGV---- 56 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 RN N + G V++ GC A ++G+E+ + I V+ Q L + R Sbjct: 57 ---RNYINGVKRRGAK--VILTGCGAVSKGKELFDKDAIFGVMGASQKANINSLLSSKQR 111 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 F + D + DK +IV N + AF+ IQEGC+ C++C++P RG S Sbjct: 112 FFEL---GDLNSIDK----NIVTSYENHTK---AFIKIQEGCNFACSYCIIPSVRGKARS 161 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + +++EA+ L NG E+ L G N+ ++ GK + LL +L +I G+ R+R Sbjct: 162 MDENSIINEAKILAANGYNELVLTGTNIGSY-GKDTG---SSLGRLLANLGKIPGIRRIR 217 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + P + + + + L +LH+ +Q S+++L+ M RR+ A+ ++ + + S Sbjct: 218 LGSIEPSQIDESFREILKE-SWLERHLHIALQHTSEKMLRIMRRRNQAFSDLELFNELSS 276 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + A+ +DFIVG PGE+++ + ++ K +F YSPR T + M V Sbjct: 277 L--GFALGTDFIVGHPGESEEIWAEALENFKKFPLTHLHAFAYSPRANTHSATMKAGVGG 334 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 +V ERL L++ + ++F + ++VL+EK Sbjct: 335 DVAKERLNLLKQITAQNNLNFRKRH-KENLKVLVEK 369 >gi|110678963|ref|YP_681970.1| RNA modification protein [Roseobacter denitrificans OCh 114] gi|123172670|sp|Q169Q9|RIMO_ROSDO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|109455079|gb|ABG31284.1| RNA modification enzyme, MiaB-family, putative [Roseobacter denitrificans OCh 114] Length = 459 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 127/454 (27%), Positives = 208/454 (45%), Gaps = 46/454 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY D AD +++NTC + A + S +G N Sbjct: 33 SLGCPKALVDSERILTRLRAEGYGISPDYDGADAVIVNTCGFLDSAKAESLSAIGEALN- 91 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ AE E I P V V GPQ Y ++V+ Sbjct: 92 ENGR--------VIVTGCLG-AEPEYITGAHPKVLAVTGPQQY-------------EQVL 129 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D ++ D F L R + +L I EGC+ C FC++P RG SR Sbjct: 130 DAVHAAVPPSPDPFVDLLPATAVSLTPRHFS-YLKISEGCNHKCKFCIIPDMRGRLASRP 188 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKG 259 V+ EA KL+DNGV E+ ++ Q+ +A+ G+D G + +DL L + Sbjct: 189 AHAVMREAEKLVDNGVRELLVISQDTSAF---GVDIKHAEERGHRAHITDLARDLGSLGA 245 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G +++PYL +P Q +L+ M R A + I Sbjct: 246 WVRLHYVYPYPHVRQLIPLMADG---LVLPYLDIPFQHAHPDVLRRMARPAAAAKTLDEI 302 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R++ PD+ + S FIVG+PGET+++F+ +D +D+ + F+Y G + + Sbjct: 303 AAWRAICPDLTLRSTFIVGYPGETEEEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALP 362 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQS 437 + V E+VK +R K ++ + A V Q +EV++++ + + +P + Sbjct: 363 DHVPEDVKQDRWNRFMAKSQDISEAKLAAKVAQRLEVIVDEVDADAATCRTKADAPEIDG 422 Query: 438 VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468 + H+ GDI+ V + + L+G L Sbjct: 423 NLFIDDGHDGLKPGDIVTVEVDEAGEYDLWGRLA 456 >gi|46581553|ref|YP_012361.1| putative tRNA modifying protein [Desulfovibrio vulgaris str. Hildenborough] gi|81404006|sp|Q726F7|RIMO_DESVH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|46450975|gb|AAS97621.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Desulfovibrio vulgaris str. Hildenborough] gi|311235197|gb|ADP88051.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio vulgaris RCH1] Length = 430 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 129/448 (28%), Positives = 205/448 (45%), Gaps = 49/448 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87 S GC N D+ E + S G + V + AD++++NTC I E V + + I Sbjct: 8 SLGCPKNRVDT---EHLLGSLGVAVQPVEHLSRADVVLINTCGFILPAVEESVRTIVETI 64 Query: 88 RNLKNSRIKEGGDLLVVVAGC-VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +L R + L+ VAGC V + +E+ P V+V + Q P +L A Sbjct: 65 DDLSGLRKRP----LLAVAGCLVGRYGAKELASELPEVDVWLPNQDITAWPAMLAHAL-- 118 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 K E ++ G A+L I +GC C+FC +P RG S Sbjct: 119 ------------KLEG-AVTPGRLLSTGPSYAWLKISDGCRHNCSFCTIPSIRGGHRSTP 165 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265 + EAR L+ GV E+ L+ Q+V AW G D G + LL L + GL RLR Sbjct: 166 ADVLEREARDLVAQGVRELVLVAQDVTAW---GEDIGAPHGLATLLERLLPVPGLARLRL 222 Query: 266 TTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P ++ L+ D L+PY +P+Q IL M R A + R++++R+R Sbjct: 223 MYLYPAGLTRELLGFMRDAGAPLVPYFDVPLQHAHPDILSRMGRPF-ARDPRRVVERVRD 281 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD A+ + IVGFPGETD+ + A V++ + F Y GTP + M EQV++ Sbjct: 282 FFPDAALRTSLIVGFPGETDEHYAALTSFVEETRFTHMGVFAYRAEEGTPAAEMPEQVED 341 Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 VK R L+ +Q ++ E+ ++ ++ Q++ + H + G GR+ W Q+ ++ Sbjct: 342 RVKEWRRDALMEVQAEISEELLAVHEGTRQQVL--VDAPHEEWPGLHTGRT-WFQAPEID 398 Query: 442 SKNHNIG-----------DIIKVRITDV 458 + G DI++ R D+ Sbjct: 399 GITYVSGPGVEPGALVEADIVETRTYDL 426 >gi|157129375|ref|XP_001661661.1| radical sam proteins [Aedes aegypti] gi|108872257|gb|EAT36482.1| radical sam proteins [Aedes aegypti] Length = 558 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 122/486 (25%), Positives = 218/486 (44%), Gaps = 67/486 (13%) Query: 11 AHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68 A + + V + ++P Q ++K++GC N DS M S GY + DADL +LN Sbjct: 50 AAVPEKSVLESVIPGTQSIYLKTWGCAHNNSDSEYMAGQLASYGYNITSDKSDADLWLLN 109 Query: 69 TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128 +C ++ + + RN + K G VV+AGCV QA + +V Sbjct: 110 SCTVKNPSEDT-------FRNEIQAANKMGKH--VVLAGCVPQAAPKSDYMHG---LSIV 157 Query: 129 GPQTYYRLPELLE-------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG 175 G R+ E++E + GKRV ++ RK Sbjct: 158 GVHQIDRVTEVVEETLKGHSVRLLQAKKLNGKRVAGPQLALPKV------------RKNP 205 Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 + + I GC CT+C + R +S + ++V A + GVCEI L ++ + Sbjct: 206 LIEIIPINSGCLNACTYCKTKFARADLVSYPVEEIVQRAAHVFTEGVCEIWLTSEDTGTY 265 Query: 236 RGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287 G+ + + +LL+ L + G+ Y H +M+ L+ + Sbjct: 266 -GRDIG---TSLPELLWQLVAVIPDGCMLRLGMTNPPYILEHLEEMAKILVHPK-----V 316 Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347 +LH+P+QSGSD +L M R + ++ QI+D + P I I++D I GFP ET++DF Sbjct: 317 YSFLHVPIQSGSDSVLSDMKREYCRSDFEQIVDFLNDKVPGITIATDIICGFPTETEEDF 376 Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407 TM L +K + F ++ PR GTP + M + + A+++ K+L + ++ + Sbjct: 377 EHTMTLCEKYKFPSLFINQFYPRPGTPAAKM-----QRIPADQVKVRTKRLTDLFYTY-E 430 Query: 408 ACVGQII-----EVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIST 462 VG+ + +VL+ + +K VG + + V+L + +G +++V I + + Sbjct: 431 PYVGKYVLGDRQKVLVTEISHDKKHYVGHNKCYEQVLLPMDKNLLGKLVEVEIVGITKFS 490 Query: 463 LYGELV 468 + ++V Sbjct: 491 MLAKVV 496 >gi|90421738|ref|YP_530108.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisB18] gi|90103752|gb|ABD85789.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisB18] Length = 420 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 126/411 (30%), Positives = 190/411 (46%), Gaps = 51/411 (12%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N ++S + + G D IV+N+C + +A + IR Sbjct: 5 VVTFGCRLNAFESELIRRQAEAAGC--------TDTIVVNSCAVTNEAVAQARQ---SIR 53 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 LK R +VV GC AQ + + V+ V+G R R Sbjct: 54 RLKRERPSA----RIVVTGCAAQTQAA-MFADMVEVDRVLGNDDKMR--------GTAWR 100 Query: 149 VVDTDYSVED--KFERLSIVD------------GGYNRKRGVT-AFLTIQEGCDKFCTFC 193 T ++ E++++ D GY + G+ F+ +Q GCD CTFC Sbjct: 101 AAQTAFAAGPVPGAEKIAVADIMAVREMAPHLLDGY--QSGLPRVFVQVQNGCDHRCTFC 158 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 ++P+ RG S L+ V++ R L + G EI L G ++ ++ G L G Sbjct: 159 IIPFGRGNSRSVPLAAAVEQVRALTERGHAEIVLTGVDLTSY-GADLAGAPTLGLLTKQI 217 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 L E+ L RLR ++ + L+ + LMP+LHL +QSG D ILK M RRH Sbjct: 218 LREVPELQRLRISSIDSIEADADLLDVVANEPRLMPHLHLSLQSGDDLILKRMKRRHCRA 277 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + + ++R +RPDIA+ +D I GFP ETD+ F ++DLV+ + F YSPR GT Sbjct: 278 QAIEFCAQLRRLRPDIALGADLIAGFPTETDEMFARSLDLVEACDLSLLHVFPYSPRPGT 337 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQ----VSFNDACVGQIIEVLIEK 420 + M QVD N +R K+LRE + DA +G EVLIE Sbjct: 338 AAAKM-PQVDGNAVKQR----AKRLREAGDAALLRRLDAEIGAAREVLIES 383 >gi|29829050|ref|NP_823684.1| hypothetical protein SAV_2508 [Streptomyces avermitilis MA-4680] gi|81720044|sp|Q82K95|RIMO_STRAW RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|29606156|dbj|BAC70219.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 495 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 143/500 (28%), Positives = 217/500 (43%), Gaps = 66/500 (13%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G++ V +DAD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLEADGWQLVEDAEDADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 L +LK G VV GC+A+ G+E+ P + V+G Y + + L Sbjct: 61 VDALLEANDLKG----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYTNISDRL 116 Query: 141 --------------------------ERARFGKRVVDTDYSV-----EDKFERLSIVDGG 169 ER G V + ED E L+ G Sbjct: 117 QTILNGGIHAAHTPRDRRKLLPISPAERQSAGADVALPGHGAPEGLPEDLPEGLAPESGP 176 Query: 170 YN--RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224 R+R A + + GCD+ C+FC +P RG ISR S V+ E R L + GV E Sbjct: 177 RAPLRRRLDGSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKE 236 Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284 + L+ +N N GK L G+ LL L+E+ G+ R+R + P +M LI Sbjct: 237 VMLVSEN-NTSYGKDL-GDIRLLETLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTST 294 Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344 + PY L Q + +L++M R + +++D IRS P + S+FIVGFPGET+ Sbjct: 295 PKIAPYFDLSFQHSAPDVLRAMRRFGDTDRFLELLDTIRSKAPQAGVRSNFIVGFPGETE 354 Query: 345 DDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399 D T +D IG F YS GT + ++DE+V A RL + + Sbjct: 355 ADLAELERFLTGARLDAIGV-----FGYSDEEGTEAATYGHKLDEDVVAARLARVSRLAE 409 Query: 400 EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--NSKNHNIGDIIKV 453 E + VG+ + VL+E E+G VGR +P VL + + +G +++ Sbjct: 410 ELVAQRAEERVGETVHVLVESIDDEEGA-VGRAEHQAPETDGQVLFTSGEGLTVGRMVEA 468 Query: 454 RI-----TDVKISTLYGELV 468 ++ D+ L G LV Sbjct: 469 KVVGTEGVDLVAEPLPGSLV 488 >gi|124027960|ref|YP_001013280.1| hypothetical protein Hbut_1092 [Hyperthermus butylicus DSM 5456] gi|123978654|gb|ABM80935.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456] Length = 441 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 128/448 (28%), Positives = 215/448 (47%), Gaps = 25/448 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++++YGC +N+ D+ M + S+GY N +D+AD+I++NTC +R ++ Sbjct: 5 RVYIETYGCALNMADTAIMRSVLSSRGYSFTNCVDEADVIIINTCTVRLDTEARMKR--- 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI L K G L VVAGC+A A+ + R +P V+V + + +ER Sbjct: 62 RIAELAAIAEKTGARL--VVAGCMASAQPYTVKRIAPKA-VLVSTYNVHLVDIAVERG-- 116 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +D +K + L RG A + I EGC C+FC+ R SR Sbjct: 117 ----LDLLTPPREKPKPL-FKPTPRLMLRGKIAEVPIAEGCLGDCSFCITKIARRRVYSR 171 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +V R+L+ G EI L GQ++ + G L G++ +L+ + E++G +R Sbjct: 172 PVENIVKLVRELVRLGAVEIRLTGQDIAVY-GIDLYGKR-LLPELVRRVIEVEGDFMVRI 229 Query: 266 TTSHPRDMSDCL-----IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 P + L + H + ++HLPVQSG DR+L+ M R +T EYR I+ Sbjct: 230 GMMSPDQLEPILDEFLEVFRHPKV---FKFVHLPVQSGDDRVLRIMKRNYTVDEYRAIVR 286 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR+ P + I++D IVG PGE ++ F T+ L++++ + + +Y+PR T + L Sbjct: 287 EIRNKVPGVMIATDIIVGHPGEDEEAFENTVRLIEELRFERVHLAQYTPRQRTVAAG-LP 345 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 QV + VK +R L + + + + +G L+ G E+G L + V+L Sbjct: 346 QVPDPVKKKRSKRLTEVVMRIGLEEHRRYIGSRACALVVSRG-ERGGLDAKLYNYMPVIL 404 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + G+ + + D L G +V Sbjct: 405 PEGSARPGEWRCIEVVDATWYDLRGRVV 432 >gi|225874941|ref|YP_002756400.1| RNA modification enzyme, MiaB-family [Acidobacterium capsulatum ATCC 51196] gi|225794112|gb|ACO34202.1| RNA modification enzyme, MiaB-family [Acidobacterium capsulatum ATCC 51196] Length = 512 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 130/448 (29%), Positives = 208/448 (46%), Gaps = 49/448 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYS 82 P+ FV S GC N+ DS M + G AD++V+NTC + A E V + Sbjct: 19 PRIGFV-SLGCPKNLVDSEVMMGLLDRAGGVMTQDAASADILVVNTCSFIDAAKQESVDT 77 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L ++ R ++ ++VAGC+ + +EI + P V+ VVG L ++LE Sbjct: 78 ILEMAQHKTTGRAQK-----LIVAGCLVERYRDEIQKNIPEVDAVVGTG---ELEKVLEA 129 Query: 143 ARFG----KRVVDTDYSV----------------EDKFERLSIVDGG--------YNRK- 173 A D+ +++ + +F+R DG Y+ Sbjct: 130 AGLALPPAPAASDSPFTILSAGVAARPEGELREQQGRFDREQW-DGATAALPQYLYDHTT 188 Query: 174 ------RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227 R +A++ I EGCD C+FCV+P RG SR VV EA+ L+ GV EITL Sbjct: 189 PRLRATRSASAYIKIAEGCDHPCSFCVIPNLRGKFRSRRFESVVAEAQSLVAQGVREITL 248 Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287 +GQ+ + G+ L G K + LL L++I+GL+ LR+ ++P ++ L+ D + Sbjct: 249 IGQDTTCY-GEDL-GLKDGLALLLERLAQIEGLLWLRFLYAYPNKITGKLLDTIAKHDNI 306 Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347 YL +P+Q S +LKSM R A + I++ R+ P + + + FIVGFPGET +DF Sbjct: 307 CKYLDVPLQHASGAVLKSMKRGANAEILLKTIEKARARVPGLVLRTSFIVGFPGETAEDF 366 Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407 V F YS G+ ++ ++ +R L K+ + Sbjct: 367 ATLQQFVRDAQIDWLGVFTYSDEEGSKAFDLEGKLPRRTIEQRKRALMKQQQGISRRAKQ 426 Query: 408 ACVGQIIEVLIEKHGKEKGKLV-GRSPW 434 VG++++VL+E +E L GR+ W Sbjct: 427 QWVGRVVDVLVEGESEETPLLWQGRTAW 454 >gi|88658127|ref|YP_507040.1| MiaB family tRNA modification protein [Ehrlichia chaffeensis str. Arkansas] gi|88599584|gb|ABD45053.1| tRNA modification enzyme, MiaB family [Ehrlichia chaffeensis str. Arkansas] Length = 412 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 126/447 (28%), Positives = 220/447 (49%), Gaps = 44/447 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---DLIVLNTCHIREKAAEKVYSFLG 85 V ++GC++N Y+S ++ N++ A D+IV+++C + +A +V S Sbjct: 4 VITFGCRLNFYESEVIK-----------NNLKKAQLDDVIVVHSCAVTNEAERQVRS--- 49 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIR L ++ ++ ++VAGC Q E+ P V V+G Q + L + + Sbjct: 50 RIRKL----YRDNANVKIIVAGCAVQL-NPELYVNMPGVIKVLGNQDKLKYESYLAKDKI 104 Query: 146 -GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++ ++ V+D + S G +R A + IQ GC+ CTFCV+ RG S Sbjct: 105 IVSKIENSKEVVQDSVKGFS----GKSR-----ALIEIQNGCNHECTFCVITKARGNNRS 155 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVR 262 + ++ + + +DNG E+ G +++ + GLD G++ + + LS + L R Sbjct: 156 LYIEDIITKVKACVDNGYNEVVFTGVDISDF---GLDIYGQRVLGTMIKRVLSAVPQLRR 212 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ D LI + MP+LHL +QSG++ ILK M RRH+ + + ++I Sbjct: 213 LRLSSIDVAEIEDDLINIIINEPRFMPHLHLSLQSGNNLILKRMKRRHSREQVIEFCNKI 272 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 S R ++ +D IVGFP ET++ F T+ L+++ + F YS R GTP + M QV Sbjct: 273 TSKRKEVVFGADIIVGFPTETEEMFNDTVRLIEEANISYLHVFPYSKREGTPAARM-PQV 331 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 + VK R+ L + ++ F + V++EK G GR+ V Sbjct: 332 VQEVKKRRVKHLLEFAEKRLHDFYSTLLHTKQSVVVEKSG------TGRAENFALVKFLD 385 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 N + I++V I V+ + L G++ V Sbjct: 386 DNVQLQSIVEVEIKRVEGNYLVGQVFV 412 >gi|163784661|ref|ZP_02179488.1| hypothetical protein HG1285_10340 [Hydrogenivirga sp. 128-5-R1-1] gi|159880071|gb|EDP73748.1| hypothetical protein HG1285_10340 [Hydrogenivirga sp. 128-5-R1-1] Length = 197 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 77/199 (38%), Positives = 128/199 (64%), Gaps = 8/199 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++++++++GCQMN+ DS +M + + GYE S ++AD+I++NTC +REK +KV S L Sbjct: 2 KKYYIRTFGCQMNINDSQKMAGILKTLGYEPAESWEEADVILVNTCSVREKPDQKVLSAL 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G + +KN + D ++ V GC+AQ G EIL+++P +++V G + LP+LLE A+ Sbjct: 62 GEFKKVKN----KNPDAVIGVCGCLAQRAGYEILQKAPFIDMVFGTTNIHHLPQLLEEAQ 117 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYN-RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G + V+ +ED E + +D R TA++TI GCDK CT+C+VP TRG E Sbjct: 118 QGNKAVEI---IEDIDENETQLDSYPTVRDNKYTAYVTIIRGCDKKCTYCIVPATRGKER 174 Query: 204 SRSLSQVVDEARKLIDNGV 222 SR + +++ E + L+++GV Sbjct: 175 SRRIGEILQEVQYLVEDGV 193 >gi|68171458|ref|ZP_00544845.1| Protein of unknown function UPF0004:MiaB-like tRNA modifying enzyme [Ehrlichia chaffeensis str. Sapulpa] gi|67999119|gb|EAM85782.1| Protein of unknown function UPF0004:MiaB-like tRNA modifying enzyme [Ehrlichia chaffeensis str. Sapulpa] Length = 412 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 126/447 (28%), Positives = 220/447 (49%), Gaps = 44/447 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA---DLIVLNTCHIREKAAEKVYSFLG 85 V ++GC++N Y+S ++ N++ A D+IV+++C + +A +V S Sbjct: 4 VITFGCRLNFYESEVIK-----------NNLKKAQLDDVIVVHSCAVTNEAERQVKS--- 49 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIR L ++ ++ ++VAGC Q E+ P V V+G Q + L + + Sbjct: 50 RIRKL----YRDNANVKIIVAGCAVQL-NPELYVNMPGVIKVLGNQDKLKYESYLAKDKI 104 Query: 146 -GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 ++ ++ V+D + S G +R A + IQ GC+ CTFCV+ RG S Sbjct: 105 IVSKIENSKEVVQDSVKGFS----GKSR-----ALIEIQNGCNHECTFCVITKARGNNRS 155 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLVR 262 + ++ + + +DNG E+ G +++ + GLD G++ + + LS + L R Sbjct: 156 LYIEDIITKVKACVDNGYNEVVFTGVDISDF---GLDIYGQRVLGTMIKRVLSAVPQLRR 212 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ ++ D LI + MP+LHL +QSG++ ILK M RRH+ + + ++I Sbjct: 213 LRLSSIDVAEIEDDLINIIINEPRFMPHLHLSLQSGNNLILKRMKRRHSREQVIEFCNKI 272 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 S R ++ +D IVGFP ET++ F T+ L+++ + F YS R GTP + M QV Sbjct: 273 TSKRKEVVFGADIIVGFPTETEEMFNDTVRLIEEANISYLHVFPYSKREGTPAARM-PQV 331 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 + VK R+ L + ++ F + V++EK G GR+ V Sbjct: 332 VQEVKKRRVKHLLEFAEKRLHDFYSTLLHTKQSVVVEKSG------TGRAENFALVKFLD 385 Query: 443 KNHNIGDIIKVRITDVKISTLYGELVV 469 N + I++V I V+ + L G++ V Sbjct: 386 DNVQLQSIVEVEIKRVEGNYLVGQVFV 412 >gi|148261480|ref|YP_001235607.1| MiaB-like tRNA modifying enzyme [Acidiphilium cryptum JF-5] gi|146403161|gb|ABQ31688.1| MiaB-like tRNA modifying enzyme [Acidiphilium cryptum JF-5] Length = 411 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 107/350 (30%), Positives = 171/350 (48%), Gaps = 25/350 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + ++GC++N ++S M +G+ + DA +++NTC + +A + + R Sbjct: 5 ILTFGCRLNAFESEVM------RGHAEAAGLGDA--VIVNTCAVTAEAERQARQAIRRAH 56 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 + ++V GC AQ + + V+ + PE R+ Sbjct: 57 RADPA-------AKIIVTGCAAQIDPAAWSSIEGVARVLGNAEKLT--PEAW-RSEAPVL 106 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V D ++ + +++G R R AF+ +Q+GCD CTFC++PY RG S L Sbjct: 107 VADI---MQLRQTAAHLIEGFGTRAR---AFIEVQQGCDHRCTFCIIPYGRGPSRSIPLG 160 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 VV++ R L+ NG E+ L G ++ ++ G L G L+ + L RLR ++ Sbjct: 161 AVVEQVRTLVANGYNEVVLTGVDLTSY-GADLPGAPKLGQLCRRLLAAVPDLPRLRLSSI 219 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P ++ D L + LMP+LHL VQ+GSD ILK M RRH + + R R++RPD Sbjct: 220 DPAEIDDDLWRLLESEPRLMPHLHLSVQAGSDLILKRMKRRHLRHHVIEAAARARALRPD 279 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 IA+ +D I GFP ET+ F T+ LVD G F +S R GTP + + Sbjct: 280 IALGADLIAGFPTETEAHFAETLALVDDAGLDYLHVFPFSARKGTPAARI 329 >gi|86747486|ref|YP_483982.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris HaA2] gi|86570514|gb|ABD05071.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris HaA2] Length = 422 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 127/406 (31%), Positives = 182/406 (44%), Gaps = 37/406 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N ++S + G + IV+N+C + +A + IR L Sbjct: 7 TFGCRLNAFESEVIRREAEGAGL--------TETIVVNSCAVTNEAVAQARQ---SIRKL 55 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K +R D +VV GC AQ E V+ V+G R E AR Sbjct: 56 KRAR----PDARIVVTGCAAQTEPATFAAMDE-VDRVIGNDDKIRT-EAWREARAAFDAD 109 Query: 151 DTDYSVEDKFERLSI----------VDG---GYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 E+K I VDG G R F+ +Q GCD CTFC++PY Sbjct: 110 AFGLGNEEKIAVADIMAVREMAPHLVDGYQSGLPR-----VFVQVQNGCDHRCTFCIIPY 164 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG S + VVD+ R L + G EI L G ++ ++ G L G + + L + Sbjct: 165 GRGNSRSVPVGAVVDQVRALAERGHAEIVLTGVDLTSY-GADLPGTPKLGTLVKKVLRHV 223 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 L RLR ++ + L+ A + LMP+LHL +Q+G D ILK M RRH + Sbjct: 224 PELRRLRISSIDSIEADRDLLDALASEERLMPHLHLSLQAGDDLILKRMKRRHARQDAID 283 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 D +R +RPDIA+ +D I GFP ETD F+ ++DLV + G F YS R GTP + Sbjct: 284 FCDEVRRLRPDIALGADLIAGFPTETDAMFQRSLDLVAECGLTFLHVFPYSKRPGTPAAR 343 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 M Q+D V +R L+ A +G VLIE + Sbjct: 344 M-PQLDGRVVRQRAAQLRAAGEAALQKRLAAEIGATRAVLIESAAQ 388 >gi|270157773|ref|ZP_06186430.1| MiaB family RNA modification enzyme [Legionella longbeachae D-4968] gi|289163959|ref|YP_003454097.1| hypothetical protein LLO_0613 [Legionella longbeachae NSW150] gi|269989798|gb|EEZ96052.1| MiaB family RNA modification enzyme [Legionella longbeachae D-4968] gi|288857132|emb|CBJ10948.1| putative conserved hypothetical protein [Legionella longbeachae NSW150] Length = 436 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 136/455 (29%), Positives = 221/455 (48%), Gaps = 47/455 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ +QGYE V+S DA ++V+NTC + A ++ + + Sbjct: 9 SLGCPKALVDSERIITQLRAQGYELVSSYQDAGVVVINTCGFIDSAVKE------SLDTI 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K + + G V+V GC+ A+ + I P V + G Y + + + Sbjct: 63 KEAMAENG---RVIVTGCLG-AKADIIKEACPDVLHISGAHAYEEVVNAVHQHLPPPT-- 116 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F +L I G A+L I EGC++ CTFC++P RG S ++QV Sbjct: 117 -------DPFTQL-IPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKLQSYPMAQV 168 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA++L D GV EI ++ Q+ +A W+GK ++ F DL L ++ Sbjct: 169 LTEAKRLKDAGVHEILVISQDTSAYGVDTRYQPVNWQGKTINTR---FFDLCEQLGQLGI 225 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +RL Y +P D +I D +++PYL +P+Q + +ILK+M R ++ I Sbjct: 226 WIRLHYVYPYPH--VDEIIPLMRD-GLILPYLDIPLQHANSKILKTMKRPASSENTLLRI 282 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R + PDI + S FIVGFPGET+++F +D +++ + FKYSP G + + Sbjct: 283 ASWREICPDITLRSTFIVGFPGETEEEFEELLDFLEEAQLDRVGCFKYSPVEGAKANELS 342 Query: 380 EQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE-KGKLVGRSPW 434 + V E +K E R + LQ ++ ++ ++ VG+ V+I E HG + + G +P Sbjct: 343 DPVPEEIKEERYHRFMQLQAEISRDKL---ESKVGKTQTVIIDEIHGDQIIARSKGDAPE 399 Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYGEL 467 + +V+ N I G +V ITD LY E Sbjct: 400 IDGLVILPPNPGIKSGSFAEVIITDSDDYDLYAEF 434 >gi|317051787|ref|YP_004112903.1| MiaB-like tRNA modifying enzyme [Desulfurispirillum indicum S5] gi|316946871|gb|ADU66347.1| MiaB-like tRNA modifying enzyme [Desulfurispirillum indicum S5] Length = 426 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 113/398 (28%), Positives = 194/398 (48%), Gaps = 24/398 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q F++K+ GC++N +S M++ G + AD +++N+C + +A K ++ Sbjct: 2 QAFYIKTLGCRLNQAESAMMKEELILSGMRQAEHPGQADFVLVNSCTVTARADSKTLAYA 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R R +E + + GC+AQ E++L P V++V G Q L L R Sbjct: 62 RRAR-------RENPAATIAIIGCMAQTAMEDLLAL-PYVDMVFGNQEKNALVTTLLRQV 113 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 V +++S K + D N L IQ+GCD C++C+V RG S Sbjct: 114 PHSVGVLSEHSAPLKLIAQASGDERVN--------LKIQDGCDNTCSYCLVTIARGPSRS 165 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + V++ A +L + EI L G ++ ++ GK L E + L+ L EI L RLR Sbjct: 166 IKMEHVLETAAELA-HTFDEIILTGVHIGSY-GKDL-AEPSSLGRLMERLLEIPHLGRLR 222 Query: 265 YTTSHPRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 ++ P ++ + ++ +H L +LH+ +QS DRIL MNR + E ++++++ Sbjct: 223 LSSIEPAEIDETILGLLSHPKL---CRHLHISLQSADDRILALMNRHYRWSEALKVMEQV 279 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 +S+ P + I +D I GFPGE+ F + ++ F +S R GT ++ +Q Sbjct: 280 KSIDPFLKIGTDIIAGFPGESPATFESICQRIESSPLDYLHIFPFSGRPGTQAVDLPDQC 339 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 ++ K R+ LQ Q F+ +C+GQ VL+EK Sbjct: 340 PDHEKHARVQRLQAVAAHLQERFHRSCLGQQRWVLLEK 377 >gi|312076345|ref|XP_003140819.1| CDK5 regulatory subunit-associated protein 1-like 1 [Loa loa] gi|307764018|gb|EFO23252.1| CDK5 regulatory subunit-associated protein 1-like 1 [Loa loa] Length = 478 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 116/432 (26%), Positives = 210/432 (48%), Gaps = 28/432 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N DS +M + G++ N +DA L +LN+C ++ + ++ + + Sbjct: 44 QKIYIRTWGCTHNTSDSEQMAGLLSEAGHQLTNKKEDASLWILNSCTVKTPSETQLENTV 103 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R L ++VAGCV+QAE LR +++V G + + + +E Sbjct: 104 KEARKLNK---------FIIVAGCVSQAEPN--LRFLEGISIV-GVKQIECVTQAVEETL 151 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G V + L + RK L I GC CT+C RG +S Sbjct: 152 KGNCVRFLSQRKPNSNLLLPKI-----RKNKFIEILAISSGCLNHCTYCKTKSARGNLVS 206 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVR 262 L +++ AR +G E+ L +++ AW G+ +D DLL +L EI +G + Sbjct: 207 FPLDSLLERARNAFADGCKELWLTSEDLGAW-GRDID---MVLPDLLNALVEIIPEGCM- 261 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 LR ++P + D L + L+ + +LH+PVQS SD +L M R +T ++ +++D Sbjct: 262 LRLGMTNPPYILDFLEEISEILNHPRVYSFLHIPVQSASDAVLADMRREYTCSDFCRVVD 321 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + P+I I++DFI +P ET DF +M LV K + F ++ R+GTP +N L+ Sbjct: 322 YMTQNVPNIYIATDFICAYPTETKSDFEESMALVRKYRFPSLFINQFYSRIGTPAAN-LK 380 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 ++D V+A R L ++ +G+ VL+ + ++ VG + + + ++ Sbjct: 381 KID-TVEARRRTAEMSTLFRSYSRYDKKRIGEKHRVLVCELATDQQHYVGHNKYYEHFLI 439 Query: 441 NSKNHNIGDIIK 452 +SK +G ++ Sbjct: 440 SSKKCLLGKWVE 451 >gi|303233275|ref|ZP_07319947.1| ribosomal protein S12 methylthiotransferase RimO [Atopobium vaginae PB189-T1-4] gi|302480665|gb|EFL43753.1| ribosomal protein S12 methylthiotransferase RimO [Atopobium vaginae PB189-T1-4] Length = 532 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 120/449 (26%), Positives = 201/449 (44%), Gaps = 51/449 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89 + GC N D+ RM + + G+ ++ DDAD++++NTC A +E + L + Sbjct: 84 TLGCAKNQVDTDRMRALLLASGFREAHNTDDADVVLINTCSFLATATSESIDVTLDLAQE 143 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL------LERA 143 +N +++ GCV G+ + P V V + + LE Sbjct: 144 QQNGITT----CPIIMCGCVPARYGKALTGELPEVAAFVKANDEDGIIGVVCDVLGLEHP 199 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 F S ++ R ++ K +AF+ I EGC + C FC +P+ RG Sbjct: 200 SF---------SFVEELTRRAL-----RTKEATSAFVKISEGCSRMCAFCAIPHIRGPYA 245 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD---LLYSLSEIKGL 260 SR ++ E L+D G+ EI L+GQ+ W C F + L + L ++ Sbjct: 246 SRPPQDILAEVDMLVDAGIHEIILIGQDTGIW--------GCDFKEPKTLAWLLQQVAHH 297 Query: 261 VR-----LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 VR +R P M+ LI D ++PY+ +P+Q S+++LK M R +A E Sbjct: 298 VRGKQCWIRVLYLQPEGMTPELISTIRDTPEVLPYIDIPIQHCSEQVLKRMGRTGSAQEL 357 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 ++ +R P++ + + +VGFPGET + +D + F YS GT Sbjct: 358 HELFATLRREIPNMVLRTTGMVGFPGETAQEADELVDFFKAEEFDYMSVFSYSQEDGTTA 417 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKG--KLVGRS 432 + M +QV K ER L+ E S VG++++V+I+ K + G +L+G + Sbjct: 418 ARMRDQVSAQTKLERTQRLRDVAEELGFSATAKHVGEVVDVIIDSKDYNDDGSFELIGHA 477 Query: 433 PWLQ------SVVLNSKNHNIGDIIKVRI 455 W Q +V L + IGDI++VR+ Sbjct: 478 -WFQAPDCDGAVHLPADAGEIGDIVRVRL 505 >gi|4530613|gb|AAC38321.2| unknown [Ralstonia eutropha H16] Length = 505 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 132/479 (27%), Positives = 224/479 (46%), Gaps = 69/479 (14%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS ++ ++GY + D ADL+V+NTC ++A ++ Sbjct: 61 PRVGFV-SLGCPKALVDSEQIITQLRAEGYAISGTYDGADLVVVNTCGFIDEAVQESLDA 119 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPEL 139 +G + E G V+V GC+ A G +I+ P V V GP + L E+ Sbjct: 120 IGEA-------LTENGK--VIVTGCLGAKKDAAGHDIVSSVHPKVLAVTGP---HALGEV 167 Query: 140 LERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++ V T D F L + G A+L I EGC+ C+FC++P Sbjct: 168 MQ-------AVHTHLPKPHDPFTDL-VPAAGIKLTPKHYAYLKISEGCNHRCSFCIIPSM 219 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR +++V+ EA L GV E+ ++ Q+ +A W G+ L K Sbjct: 220 RGDLVSRPVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRM 276 Query: 248 SDLLYSLSEIKG----LVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301 ++L+ +L E+ VRL Y +P ++ + + H ++PYL +P+Q Sbjct: 277 TELVAALGELAAQYGAWVRLHYVYPYPHVDEIIPLMSQGH-----VLPYLDVPLQHAHPD 331 Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 +LK M R A + +DRIR+ R P++ I S FI GFPGET+ +F+ +D + + Sbjct: 332 VLKRMKRPANA---EKTMDRIRAWREICPELTIRSTFIAGFPGETEAEFQTLLDFIAEAE 388 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YSP G +++ + + V+ ER + E VGQ + VL+ Sbjct: 389 LDRVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAEEVSARRLQRKVGQTLRVLV 448 Query: 419 EKHGKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ ++ G +GRS P + +V +++ + G+ + V+IT L+G + Sbjct: 449 DEVNQDGG--IGRSSADAPEIDGLVYIAPPERHAQRYRAGEFVDVKITGADGHDLWGAV 505 >gi|170761706|ref|YP_001787717.1| RNA modification protein [Clostridium botulinum A3 str. Loch Maree] gi|238065367|sp|B1KWJ5|RIMO_CLOBM RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|169408695|gb|ACA57106.1| RNA modification enzyme, MiaB family [Clostridium botulinum A3 str. Loch Maree] Length = 445 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 131/439 (29%), Positives = 220/439 (50%), Gaps = 33/439 (7%) Query: 31 SYGCQMNVYDSLRMEDMFF--SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 S GC N DS E M + ++ E V +A +I++NTC E A E+ + + ++ Sbjct: 10 SLGCDKNRIDS---ELMLYKLNEEAELVKDPKEAQVIIVNTCGFIETAKEESINTILQMA 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER-ARFGK 147 + K + ++VV GC+ Q E+ P +++++G Y +L E ++ + G+ Sbjct: 67 SYKKTH----NCKVLVVTGCLTQRYKGELKELIPEMDIMLGVNDYDKLLESIKVFLKSGE 122 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + S K+ I +G NR TA++ I EGC+ FCT+C +P RG S Sbjct: 123 K------SFYHKYSDTKINEG--NRILTTPTYTAYVRIAEGCNNFCTYCAIPRIRGKYRS 174 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R ++ E L GV EI L+ Q+ + G + G+K +LL +S+++G+ +R Sbjct: 175 RKKENILKEVENLAKQGVKEIILIAQDTTMY-GIDIHGKK-VLHELLRDISKVEGVKWIR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P ++++ LI+ + D + YL LP+Q S+ +LK M R+ T II ++R Sbjct: 233 LLYCYPEEITEELIEEIKNNDKVCKYLDLPIQQISNSVLKRMGRKTTKETIINIIKKLRK 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD- 383 I + + IVGFPGET+ +F + V I + FKYS GT + M EQ+D Sbjct: 293 EIEGITLRTSLIVGFPGETEGEFSELKEFVSDIKLDKLGVFKYSKEEGTSAALMEEQIDE 352 Query: 384 --ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVV 439 + + E ++ LQ+ + + N +G+I EV++E K G+ SP + + Sbjct: 353 EIKEKREEEIMILQQSISK---DINKEKIGKIYEVIVEGIKEDMYYGRNYEMSPEIDGEI 409 Query: 440 LNSKNHN--IGDIIKVRIT 456 K+ N IGDIIKV++T Sbjct: 410 YFEKDENVKIGDIIKVKVT 428 >gi|170741815|ref|YP_001770470.1| MiaB-like tRNA modifying enzyme [Methylobacterium sp. 4-46] gi|168196089|gb|ACA18036.1| MiaB-like tRNA modifying enzyme [Methylobacterium sp. 4-46] Length = 423 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 122/401 (30%), Positives = 181/401 (45%), Gaps = 26/401 (6%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S+GC++N + + R DL+V+NTC + +A + R Sbjct: 5 VLSFGCRLNAVEG---------EAVRRAAGPAGGDLLVVNTCAVTAEATRQA-------R 48 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +E L +VV GC A+ E R P V+ +VG + A G Sbjct: 49 KAIRQAARERPGLRIVVTGCGAEVEAR-AYRAMPEVSGLVGNHAKLAPATWSDGAWSGGT 107 Query: 149 VVDTDYSVEDKFERLSIV------DGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGI 201 + D +++ R G T AFL +Q GCD CTFCV+P+ RG Sbjct: 108 WSGESRAAPDPAGVGAVMAVRHASPAPAPRMPGRTRAFLPVQNGCDHRCTFCVIPFGRGP 167 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S ++ + +AR L+++GV EI L G ++ A+ G+ L + L + L Sbjct: 168 SRSLPVAAAIAQARDLVEDGVREIVLTGIDLTAY-GRDLGAGTGLGGLVKALLRALPDLA 226 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ + L+ A LMP LHL +Q+G D +LK M RRHT + + Sbjct: 227 RLRLSSIDSVEADADLLDALATEPRLMPQLHLSLQAGDDLVLKRMRRRHTRADAVAFCET 286 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R +RP+I + +D I GFP ET+ F ++ LV++ G Q F YSPR TP + M Q Sbjct: 287 VRRLRPEIVLGADLIAGFPTETEAQFARSLALVEECGLTQLHVFPYSPRPETPAARM-PQ 345 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 V V R L++ A VGQ EVL E+ G Sbjct: 346 VPGEVARARAARLREAGAAALARRLAAEVGQRREVLAERGG 386 >gi|291003708|ref|ZP_06561681.1| hypothetical protein SeryN2_04222 [Saccharopolyspora erythraea NRRL 2338] Length = 473 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 119/457 (26%), Positives = 205/457 (44%), Gaps = 47/457 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N DS + +G++ ++ AD++V+NTC E A + L + Sbjct: 3 TLGCARNEVDSEELAGNLHQRGWDLIDDESSADVVVVNTCGFVESAKKDSVDTLLAASDT 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 VV GC+A+ G E+ P + V+G Y L E L+ G+ + Sbjct: 63 GAK---------VVAVGCMAERYGAELAEHLPEADAVLGFDHYGNLAERLDDVLAGRAI- 112 Query: 151 DTDYSVEDKFERLSIVD-----------------GGYNRKRGVT---------AFLTIQE 184 + +D+ + L I G RG+ A L + Sbjct: 113 -QPHQPQDRRKMLPITPVARPAAAAASEVAVPGHGWVPSTRGIARRRLDDSPLAALKLAS 171 Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244 GCD+ C+FC +P RG +SR +V+ EA L + G E+ L+ +N ++ GK L + Sbjct: 172 GCDRRCSFCAIPSFRGSFLSRQPEEVLGEAAWLAEQGAKELFLVSENSTSY-GKDLSDPR 230 Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 LL L+ I G+ R+R + P + L++A + PY L Q S+++L+ Sbjct: 231 A-LETLLPRLAGIDGVDRVRVSYLQPAETRPGLVRAIATTPGVAPYFDLSFQHSSEKVLR 289 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 M R + + +I++IR + P+ I S+ IVGFPGET++DF D + + Sbjct: 290 RMRRFGSTESFLALIEQIRELAPEAGIRSNVIVGFPGETEEDFEELQDFLTRARLDAVGV 349 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 F YS GT + ++D +V A R+ + E + VG + VL+E+ E Sbjct: 350 FGYSDEDGTEAAGFDGKLDADVVAARVEQVSALADELVAQRAEDRVGTEVRVLVER--DE 407 Query: 425 KGKLVGRS----PWL--QSVVLNSKNHNIGDIIKVRI 455 G++ GR+ P + + VV+++ +G+++ R+ Sbjct: 408 DGEVTGRAEHQGPEVDGECVVVDAGGAGVGEVVHCRV 444 >gi|255536060|ref|YP_003096431.1| possible 2-methylthioadenine synthetase [Flavobacteriaceae bacterium 3519-10] gi|255342256|gb|ACU08369.1| possible 2-methylthioadenine synthetase [Flavobacteriaceae bacterium 3519-10] Length = 440 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 128/450 (28%), Positives = 216/450 (48%), Gaps = 41/450 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC NVYDS + + G ++V D D++V+NTC + A E+ + + Sbjct: 15 TLGCSKNVYDSEVLMGQLQANG-KKVVHEDRGDIVVINTCGFIDNAKEESINTILDFVEA 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 KN G V V GC+++ +++R P V+ G + LP LL++ + Sbjct: 74 KNR----GEVEKVFVTGCLSERYKPDLIREIPDVDQYFGTRD---LPILLKQ-------L 119 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 DY E ER++ + A+L I EGCD+ C+FC +P RG IS + + Sbjct: 120 GADYKHELIGERMTTTPKHF-------AYLKIAEGCDRPCSFCAIPLMRGKNISTPIENL 172 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 V EA KL GV E+ L+ Q++ + GLD +K DLL L ++ G+ +R + Sbjct: 173 VIEAEKLAKKGVKELILIAQDLTYY---GLDLYKKRALGDLLLRLVKVDGIEWIRLHYAF 229 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P + +++ + + Y+ +P+Q + ILK+M R + + ++D+ R P++ Sbjct: 230 PTGFPEDVLEIIKNEPKVCNYIDIPLQHINSDILKAMKRGTSHEKTNALLDKFREKVPNM 289 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK-- 387 AI + IVGFPGET++ F+ + V + + F YS T + + V + VK Sbjct: 290 AIRTTLIVGFPGETEERFQEMKEWVRTQRFDRLGCFTYSHEENTTAFVLEDNVQQEVKEA 349 Query: 388 -AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNS 442 E ++ LQ ++ ++ N +G+ + ++ KE VGR SP + + VL S Sbjct: 350 RVEEIMELQSQISWEK---NQEKIGKTFRCIFDR--KEGNYFVGRTEFDSPDVDNTVLVS 404 Query: 443 KNHN---IGDIIKVRITDVKISTLYGELVV 469 + IG +RIT + LYGE+V Sbjct: 405 AENTYLAIGTFENIRITSAEEFDLYGEVVT 434 >gi|320538377|ref|ZP_08038252.1| MiaB-like tRNA modifying enzyme [Treponema phagedenis F0421] gi|320144762|gb|EFW36503.1| MiaB-like tRNA modifying enzyme [Treponema phagedenis F0421] Length = 454 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 108/417 (25%), Positives = 204/417 (48%), Gaps = 35/417 (8%) Query: 27 FFV--KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD---LIVLNTCHIREKAAEKVY 81 FF+ ++ GC++N +S + +F QG++ S + D L ++NTC + KA +K Sbjct: 6 FFICPETLGCRLNQVESESLAVLFSLQGFQVHVSPQEPDHTILCIVNTCTVTSKAEQKA- 64 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ--TYYRLPEL 139 R L +++ +++V GC A+ EG I V G + +LP+L Sbjct: 65 ------RRLIRLLLQKFPYAVILVTGCYAELEGRTIETIDSRVISFPGKKKDALKKLPKL 118 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIV-DGGYNRKRGVTAF--------------LTIQE 184 L + + TD + D E L + + + K+ F L IQ+ Sbjct: 119 LYQLLEKNSMRLTDSYIADVSEILQFLQNTDLDSKKDSEMFALSTAHFLFHSRATLKIQD 178 Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244 GC+ C +C + + RG +S +++V+ A+ + D G E+ L G N++ ++ +G + Sbjct: 179 GCNSACAYCRIRFARGKSVSLPVTEVIRRAQAIEDEGFAELVLSGVNLSQYKSEGKN--- 235 Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 F+D+L L + + +R ++ +P ++ +K + + P+ HL +QSGS+ IL Sbjct: 236 --FADVLQQLLDETKKIHIRISSLYPESITPTFLKV-AENPRIAPHFHLSIQSGSNAILN 292 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 +M+R +TA + ++ +RS++ + + D I GFPGET +DF T+ L + + + Sbjct: 293 AMHRAYTADDIVSVVTALRSIKENPFLGCDIIAGFPGETAEDFEKTLSLCTDLRFTGIHA 352 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 F +S R GT + M QV + + +R+ LQ +E + G+ + ++EK+ Sbjct: 353 FPFSARPGTEAAGMKGQVPQRIAGKRVAMLQALAKEHYKDYLAYWDGKTLFAVVEKY 409 >gi|300727621|ref|ZP_07061010.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella bryantii B14] gi|299775141|gb|EFI71744.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella bryantii B14] Length = 437 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 125/454 (27%), Positives = 211/454 (46%), Gaps = 43/454 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGR 86 V S GC N+ DS + +F + GY+ V + ++ V+NTC E A E+ + + Sbjct: 8 VVSLGCSKNLVDSETLMKLFETNGYKCVADSKNPQGEIAVINTCGFIETAKEESINTILE 67 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF- 145 KN EG + V GC++Q +E+ P V+ G Y L + L ++ Sbjct: 68 FVERKN----EGKLKKLFVMGCLSQRYQKELEAELPEVDKFYGKFNYKLLLQDLGKSDII 123 Query: 146 ---GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 GKR + T + A+L I EGCD+ C +C +P G Sbjct: 124 TCDGKRHLTTPHHY---------------------AYLKIAEGCDRHCAYCAIPIMTGKH 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + +++DE + L++ GV E ++ Q + + G +DG K ++L+ +++I G+ Sbjct: 163 VSRPMQEILDEVKNLVEQGVKEFQVIAQELTYY-GIDIDG-KHHITELISKMADIPGVKW 220 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R ++P L+ + D + YL + +Q SD +L M+R T E +I I Sbjct: 221 IRLHYAYPNQFPMDLLDVIRERDNVCKYLDIALQHISDNVLSRMHRHVTKQETIDLIKAI 280 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 R P I I + +VGFPGET++D++ + V + + +F YS GT + E Sbjct: 281 RERVPGITIRTTLLVGFPGETEEDYQELQEFVKWARFERMGAFAYSEEEGTYSAEHYEDD 340 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437 V ++VK RL L + VG++++V+I++ KE +GR SP + Sbjct: 341 VPDDVKQHRLDELMAIQEQISTEIEAEKVGKVLKVIIDR--KEGDYYIGRTEFSSPEVDP 398 Query: 438 VVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468 VL N + +G +V+I D L G +V Sbjct: 399 EVLIPVNERQLRVGSFYQVKIVDSSEFDLTGTVV 432 >gi|332024358|gb|EGI64557.1| CDKAL1-like protein [Acromyrmex echinatior] Length = 539 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 127/465 (27%), Positives = 210/465 (45%), Gaps = 49/465 (10%) Query: 22 IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 I+P Q +VK++GC N D+ M S GY ADL +LN+C ++ A + Sbjct: 56 IIPGTQTIYVKTWGCTHNSSDTEYMTGQLASYGYNLTEDKLKADLWLLNSCTVKSPAED- 114 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 + RN K G VVVAGCV Q + + V+G Q R+ E+ Sbjct: 115 ------QFRNEIEYGKKIGKH--VVVAGCVPQGAPKSSFLQG---LSVIGVQQIDRVVEV 163 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYN------RKRGVTAFLTIQEGCDKFCTFC 193 +E G V + + L GG + R+ + + I GC CT+C Sbjct: 164 VEETLKGNTV-----RFLQQKKDLGKKTGGASLNLPKVRRNPLIEIIAINTGCLNQCTYC 218 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 + RG S ++V+ A++ + GVCE+ L ++ A+ G+ + LL+ Sbjct: 219 KTKHARGELGSYPPEEIVERAKQAFEEGVCELWLTSEDTGAY-GRDIG---TNLPKLLWQ 274 Query: 254 LSEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 L ++ G+ Y H +M+ L + + +LH+PVQSGSD +L Sbjct: 275 LIDVIPDGCMMRIGMTNPPYILEHLDEMTKILRHSK-----VYSFLHIPVQSGSDHVLAD 329 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R +T E+ +++ + P + I++D I GFP ET+ DF TM L K + F Sbjct: 330 MKREYTCAEFEHVVNFLSERVPGLTIATDIICGFPTETEMDFEETMTLCQKYKFPSLFIN 389 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGK 423 ++ R GTP + M V A+++ K+L E S+ VG I +VL+ + Sbjct: 390 QFFSRPGTPAARM-----PKVPAQKVKTRTKRLSEFFQSYEPYGHKVGLIQKVLVTEVSH 444 Query: 424 EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +K VG + + + V++ K +G +I VRI + ++ G+ + Sbjct: 445 DKQHYVGHNKFYEQVLIPLKQGYMGKMIDVRIIEATKFSMKGDPI 489 >gi|163734118|ref|ZP_02141559.1| RNA modification enzyme, MiaB-family, putative [Roseobacter litoralis Och 149] gi|161392654|gb|EDQ16982.1| RNA modification enzyme, MiaB-family, putative [Roseobacter litoralis Och 149] Length = 459 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 126/454 (27%), Positives = 209/454 (46%), Gaps = 46/454 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY D AD +++NTC + A + S +G N Sbjct: 33 SLGCPKALVDSERILTRLRAEGYGISPDYDGADAVIVNTCGFLDSAKAESLSAIGEALN- 91 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ AE E I P V V GPQ Y ++V+ Sbjct: 92 ENGR--------VIVTGCLG-AEPEYITGAHPKVLAVTGPQQY-------------EQVL 129 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D ++ D F L R + +L I EGC+ C FC++P RG SR Sbjct: 130 DAVHAAVPPSPDPFVDLLPASAVSLTPRHFS-YLKISEGCNHKCKFCIIPDMRGRLASRP 188 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKG 259 V+ EA KL+++GV E+ ++ Q+ +A+ G+D G + +DL L + Sbjct: 189 AHAVMREAEKLVESGVKELLVISQDTSAY---GVDIKHAEERGHRAHITDLARDLGSLGA 245 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G +++PYL +P Q +L+ M R A + I Sbjct: 246 WVRLHYVYPYPHVRQLIPLMAQG---LVLPYLDIPFQHAHPDVLRRMARPAAAAKTLDEI 302 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 RS+ PD+ + S FIVG+PGET+++F+ +D +D+ + F+Y G + + Sbjct: 303 AAWRSICPDLTLRSTFIVGYPGETEEEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALP 362 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQS 437 + V E+VK +R K ++ + A V Q +EV++++ + + +P + Sbjct: 363 DHVPEDVKQDRWNRFMAKSQDISEAKLAAKVAQRLEVIVDEVDTDAATCRTKADAPEIDG 422 Query: 438 VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468 + H+ GDI+ V + + L+G +V Sbjct: 423 NLFIDDGHDGLKPGDIVTVEVDEAGEYDLWGRIV 456 >gi|113867458|ref|YP_725947.1| hypothetical protein H16_A1444 [Ralstonia eutropha H16] gi|123033079|sp|Q0KBP2|RIMO_RALEH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|113526234|emb|CAJ92579.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 443 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 129/470 (27%), Positives = 218/470 (46%), Gaps = 68/470 (14%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ ++GY + D ADL+V+NTC ++A ++ +G Sbjct: 5 SLGCPKALVDSEQIITQLRAEGYAISGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 61 Query: 91 KNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPELLERARFG 146 + E G V+V GC+ A G +I+ P V V GP L E+++ Sbjct: 62 ----LTENGK--VIVTGCLGAKKDAAGHDIVSSVHPKVLAVTGPHA---LGEVMQ----- 107 Query: 147 KRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V T D F L + G A+L I EGC+ C+FC++P RG +SR Sbjct: 108 --AVHTHLPKPHDPFTDL-VPAAGIKLTPKHYAYLKISEGCNHRCSFCIIPSMRGDLVSR 164 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSL 254 +++V+ EA L GV E+ ++ Q+ +A W G+ L K ++L+ +L Sbjct: 165 PVAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPL---KTRMTELVAAL 221 Query: 255 SEIKG----LVRLRYTTSHPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 E+ VRL Y +P ++ + + H ++PYL +P+Q +LK M R Sbjct: 222 GELAAQYGAWVRLHYVYPYPHVDEIIPLMSQGH-----VLPYLDVPLQHAHPDVLKRMKR 276 Query: 309 RHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 A + +DRIR+ R P++ I S FI GFPGET+ +F+ +D + + + F Sbjct: 277 PANA---EKTMDRIRAWREICPELTIRSTFIAGFPGETEAEFQTLLDFIAEAELDRVGCF 333 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 YSP G +++ + + V+ ER + E VGQ + VL+++ ++ Sbjct: 334 AYSPVEGATANDLPGALPDEVREERRARFMEVAEEVSARRLQRKVGQTLRVLVDEVNQDG 393 Query: 426 GKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYG 465 G +GRS P + +V +++ + G+ + V+IT L+G Sbjct: 394 G--IGRSSADAPEIDGLVYIAPPERHAQRYRAGEFVDVKITGADGHDLWG 441 >gi|212691074|ref|ZP_03299202.1| hypothetical protein BACDOR_00564 [Bacteroides dorei DSM 17855] gi|237712425|ref|ZP_04542906.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237726616|ref|ZP_04557097.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265752128|ref|ZP_06087921.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 3_1_33FAA] gi|212666306|gb|EEB26878.1| hypothetical protein BACDOR_00564 [Bacteroides dorei DSM 17855] gi|229435142|gb|EEO45219.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229453746|gb|EEO59467.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263236920|gb|EEZ22390.1| MiaB-like tRNA modifying enzyme [Bacteroides sp. 3_1_33FAA] Length = 438 Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 113/396 (28%), Positives = 195/396 (49%), Gaps = 28/396 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKTLKEAGIRTARKGEKADICVINTCSVTEVADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 +K+ VVV GC AQ + +++ V+VV+G + L L E+ G+ Sbjct: 73 ----VKQHPGAYVVVTGCYAQLKPDQVANIEG-VDVVLGAEQKGELMNYLGNLEKHPQGE 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + + S D R R FL +Q+GCD FC++C +P+ RG + + Sbjct: 128 AITTAAKDIRSFSPSCSRGD----RTR---YFLKVQDGCDYFCSYCTIPFARGRSRNGRI 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++V++AR+ G EI + G N+ + GK GE +F DL+ +L ++ G+ R R ++ Sbjct: 181 EEIVEQARQAAAEGGKEIVITGVNIGDF-GK-TTGE--SFFDLVKALDQVAGIERYRISS 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D +I+ MP+ H+P+QSGSD +LK M RR+ + I +IR + P Sbjct: 237 IEPNLLTDEIIEYVSRSRAFMPHFHIPLQSGSDDVLKLMRRRYDTALFASKIRKIREIMP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384 + I D IVG GET++ F ++ + Q F YS R GT ++ ++ Sbjct: 297 NAFIGVDVIVGTRGETEEYFEDAYHFIEGLDVTQLHVFTYSERPGTQALKIEYVVSPEEK 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + +++RLL L E+ +F + +G+ VL+EK Sbjct: 357 HRRSQRLLVLSD---EKTKAFYTSHIGKEAWVLMEK 389 >gi|297156762|gb|ADI06474.1| hypothetical protein SBI_03353 [Streptomyces bingchenggensis BCW-1] Length = 521 Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 128/460 (27%), Positives = 200/460 (43%), Gaps = 69/460 (15%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N DS + + G+E V DAD+ V+NTC E A + L +L Sbjct: 11 TLGCARNEVDSEELAGRLAADGWELVEEAADADVAVVNTCGFVEAAKKDSVDALLEANDL 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K+ G VV GC+A+ G+E+ P + V+G Y + + L+ G + Sbjct: 71 KD----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYAHISDRLQTILSGG--I 124 Query: 151 DTDYSVEDKFERLSI-------------------------------VDGGYNRKRGVTAF 179 ++ D+ + L I + G G A Sbjct: 125 HASHTPRDRRKLLPISPAERQGAAEVALPGHAQAEAAPEDLPAPEDLPAGVAPASGPRAP 184 Query: 180 L------------TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227 L + GCD+ C+FC +P RG ISR S V+ E R L + GV EI L Sbjct: 185 LRRRLGSSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEIML 244 Query: 228 LGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287 + +N N GK L G+ LL L+ + G+ R+R + P +M LI + + Sbjct: 245 VSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERIRVSYLQPAEMRPGLIDVLTSTEKV 302 Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDF 347 PY L Q + +L++M R + +++DRIR+ P + S+FIVGFPGET+DD Sbjct: 303 APYFDLSFQHSAPSVLRAMRRFGDTDRFLELLDRIRAKAPQAGVRSNFIVGFPGETEDDL 362 Query: 348 RATMDLVDKIGYAQAFS---FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404 +L +G A+ + F YS GT + ++VD + AERL + + E Sbjct: 363 ---AELERFLGAARLDAIGVFGYSDEEGTEAATYEDKVDPDEVAERLAHISRLAEELTAQ 419 Query: 405 FNDACVGQIIEVLIEKHG------------KEKGKLVGRS 432 + +G ++EV++E+ G + G LVGR+ Sbjct: 420 RAEERLGDVVEVMVEESGDAHVAEDTDGADEGAGSLVGRA 459 >gi|254561877|ref|YP_003068972.1| MiaB-like tRNA modifying enzyme, 2-methylthioadenine synthetase [Methylobacterium extorquens DM4] gi|254269155|emb|CAX25121.1| MiaB-like tRNA modifying enzyme, putative 2-methylthioadenine synthetase [Methylobacterium extorquens DM4] Length = 410 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 110/355 (30%), Positives = 174/355 (49%), Gaps = 38/355 (10%) Query: 31 SYGCQMNVYDS--LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 ++GC++N +S LR ++G DL+V+NTC + +A + + R+ Sbjct: 7 TFGCRLNTVESEVLRGHAEPGAEGR---------DLVVVNTCAVTAEAGRQARKAIRRL- 56 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS----PIVNVVVGPQTYYRLPELLERAR 144 SR + G + +VV GC G E+ R S P V +VG R PE + Sbjct: 57 ----SRERPGAE--IVVTGC-----GAEVERASYAAMPEVTRLVGNAAKLR-PESWQS-- 102 Query: 145 FGKRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G D E I G+ R AF+ +Q GCD CTFCV+P+ RG Sbjct: 103 -GTAPAPEDIMAVRTAEPTHITTMSGHTR-----AFVPVQNGCDHRCTFCVIPFGRGNSR 156 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S +++ V + +++++G E+ L G ++ A+ G+ LD + + L+E+ L RL Sbjct: 157 SVPVAEAVAQVCRIVEHGGREVVLTGVDLTAY-GRDLDSDLSLGRLVRTILAEVPDLARL 215 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ + LI A + LMP++HL +Q+G D ILK M RRH+ + ++ + +R Sbjct: 216 RLSSIDSVEADAELIAAFAEEPRLMPHVHLSLQAGDDLILKRMKRRHSRADAIRLCETLR 275 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +RP + +D I GFP ET F ++DLV + G F YSPR TP + M Sbjct: 276 ELRPGLVFGADLIAGFPTETAAQFVRSLDLVAECGLTHLHVFPYSPRPNTPAARM 330 >gi|320536506|ref|ZP_08036537.1| MiaB-like tRNA modifying enzyme YliG [Treponema phagedenis F0421] gi|320146646|gb|EFW38231.1| MiaB-like tRNA modifying enzyme YliG [Treponema phagedenis F0421] Length = 485 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 114/408 (27%), Positives = 184/408 (45%), Gaps = 55/408 (13%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA----EKV 80 ++FF+ +GC N D + + +G+ R S + AD+I++N+C E A E V Sbjct: 3 KQFFLDQHGCAKNQVDGELLIGILQQEGWVRAKSAETADIIIVNSCGFIEAAKLESIEAV 62 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 S R N K +++AGC+A+ EE + P + G +LP+++ Sbjct: 63 ISARSRYPNAK-----------ILLAGCLAERYAEEFQQELPEADAFFGNGDLSQLPKIV 111 Query: 141 ERARFGKRVVDT--DYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 + + +T DY E K I N R V F+ I EGC+ C+FC Sbjct: 112 HQM-----ITNTKKDYRPALVPEQKGISCGIRPEILNFPRSV--FIKITEGCNHRCSFCA 164 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG----------------- 237 +P RG SR + V E ++ I +G E L+GQ++ A++G Sbjct: 165 IPLIRGNLRSRPIEDCVQEIQQFIKSGCYEFNLIGQDLAAFQGSKKTAYNFGTKPQGSIK 224 Query: 238 ---KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 + ++ ++LL ++S ++G R+R HP + ++ +PY LP Sbjct: 225 SIEQTFPKKQSGLAELLQAISALEGDFRVRLLYIHPDNFPLDILPIMTQDSRFLPYFDLP 284 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIR-------SVRPDIAISSDFIVGFPGETDDDF 347 QSGS IL MNRR +A +Y ++ D IR S + F+ GFPGETD DF Sbjct: 285 FQSGSANILHLMNRRGSAEKYLELADTIRNAFRKAKSPYKTTVFRTTFLTGFPGETDFDF 344 Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395 T D + + + +F +S GT ++ QV + + +RL LQ Sbjct: 345 EQTEDFLTNLKSLWSGAFVFSKEEGTKAEHLPAQVPKKLAEKRLRILQ 392 >gi|282881461|ref|ZP_06290135.1| MiaB-like protein [Prevotella timonensis CRIS 5C-B1] gi|281304687|gb|EFA96773.1| MiaB-like protein [Prevotella timonensis CRIS 5C-B1] Length = 455 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 113/402 (28%), Positives = 188/402 (46%), Gaps = 31/402 (7%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N ++ ++ G V + AD+ ++NTC + E A K + R+ Sbjct: 20 GCKLNFSETSTFAELLQGMGVRTVQCGEPADICLINTCSVTEVADHKCRQAIRRM----- 74 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR---- 148 ++E V+V GC AQ E + + + V++V+G L + L A K Sbjct: 75 --VRENPGAFVIVTGCYAQLESQTVSQIEG-VDLVLGSNEKANLVQYLNDAWLQKSELAA 131 Query: 149 -------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + T SV+ K + +R FL +Q+GC+ FCT+C +P+ RG Sbjct: 132 TSPNHRPSLHTYQSVKTK--DIKTFQPSCSRGNRTRYFLKVQDGCNYFCTYCTIPFARGF 189 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 + S+ +V +A + G EI L G N+ G+ + TF DL+ +L +++G+ Sbjct: 190 SRNPSIDFLVKQAEQAAAEGGKEIVLTGVNI----GEFGESTNETFLDLVKALDQVQGIK 245 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R R ++ P + D LI MP+ H+P+QSGSD +L+ M+R + + I Sbjct: 246 RFRISSLEPDLIDDELIDYCAHSRAFMPHFHIPLQSGSDEVLQLMHRHYDTALFAHKILY 305 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM--- 378 I+ PD I D +VG GE + F A + ++ Q F YS R GT ++ Sbjct: 306 IKEKIPDAFIGVDVMVGSRGEKPEYFEACYQFLKQLDVTQLHVFPYSERPGTRALSIPYV 365 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + ++ V+++RLL L E+ +F +GQ EVL EK Sbjct: 366 VSDKEKKVRSKRLLQLSD---EKTKAFYQKYIGQEAEVLFEK 404 >gi|298242342|ref|ZP_06966149.1| MiaB-like tRNA modifying enzyme [Ktedonobacter racemifer DSM 44963] gi|297555396|gb|EFH89260.1| MiaB-like tRNA modifying enzyme [Ktedonobacter racemifer DSM 44963] Length = 495 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 135/249 (54%), Gaps = 5/249 (2%) Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 + +Q+GC+ CT+C+VPY RG SR++ VV+ ++ G EI L G ++ + G Sbjct: 206 MKVQDGCNNRCTYCIVPYVRGNSRSRTIDSVVEHVQRKARAGYQEIVLTGIHLGDYHPAG 265 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 E+ DL+ +L + R+R ++ P D + D + + HLP+QSGS Sbjct: 266 --DEQKDLGDLIATLLRETDMPRIRVSSLEPEDFRLEWLDLWQDPRMCR-HFHLPMQSGS 322 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 D IL+ M RR+ + YR+II + P +AIS+D I GFPGETD+DF T L ++ + Sbjct: 323 DNILRRMARRYNSARYREIILTAKQRIPGVAISTDIITGFPGETDEDFELTYQLAQELEF 382 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 A+ F++S R GT + M Q+ + VK ER L E F +GQ ++VLIE Sbjct: 383 AKTHVFRFSARQGTAAARMRGQIKDVVKKERSARLLTLNEEHSRQFRQQFLGQTVDVLIE 442 Query: 420 --KHGKEKG 426 KHG +G Sbjct: 443 QSKHGYWEG 451 >gi|152149498|pdb|2QGQ|A Chain A, Crystal Structure Of Tm_1862 From Thermotoga Maritima. Northeast Structural Genomics Consortium Target Vr77 gi|152149499|pdb|2QGQ|B Chain B, Crystal Structure Of Tm_1862 From Thermotoga Maritima. Northeast Structural Genomics Consortium Target Vr77 gi|152149500|pdb|2QGQ|C Chain C, Crystal Structure Of Tm_1862 From Thermotoga Maritima. Northeast Structural Genomics Consortium Target Vr77 gi|152149501|pdb|2QGQ|D Chain D, Crystal Structure Of Tm_1862 From Thermotoga Maritima. Northeast Structural Genomics Consortium Target Vr77 gi|152149502|pdb|2QGQ|E Chain E, Crystal Structure Of Tm_1862 From Thermotoga Maritima. Northeast Structural Genomics Consortium Target Vr77 gi|152149503|pdb|2QGQ|F Chain F, Crystal Structure Of Tm_1862 From Thermotoga Maritima. Northeast Structural Genomics Consortium Target Vr77 gi|152149504|pdb|2QGQ|G Chain G, Crystal Structure Of Tm_1862 From Thermotoga Maritima. Northeast Structural Genomics Consortium Target Vr77 gi|152149505|pdb|2QGQ|H Chain H, Crystal Structure Of Tm_1862 From Thermotoga Maritima. Northeast Structural Genomics Consortium Target Vr77 Length = 304 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 159/300 (53%), Gaps = 16/300 (5%) Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237 A++ I +GCD+ CTFC +P +G SRS+ + E L+ G EI L+ Q+ ++ Sbjct: 6 AYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSY-- 63 Query: 238 KGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 G+D K DLL L+ + G +R HP +++ +I A +LD ++ Y +PVQ Sbjct: 64 -GIDLYRKQALPDLLRRLNSLNGEFWIRVXYLHPDHLTEEIISAXLELDKVVKYFDVPVQ 122 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 GSD+ILK R ++ E ++ + IR PD + + IVGFPGET++DF V++ Sbjct: 123 HGSDKILKLXGRTKSSEELKKXLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEE 182 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQI 413 I + + +F YS GT N+ E+VD + E LL LQ ++ ++ D VG+ Sbjct: 183 IQFDKLGAFVYSDEEGTVAFNLKEKVDPEXAKRRQEELLLLQAEISNSRL---DRFVGKK 239 Query: 414 IEVLIEKHGKEKGKLVGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 ++ L+E GKE LVGR+ P + VV IGD ++V I + +G +++ Sbjct: 240 LKFLVE--GKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDXWGSVIL 297 >gi|325103015|ref|YP_004272669.1| SSU ribosomal protein S12P methylthiotransferase [Pedobacter saltans DSM 12145] gi|324971863|gb|ADY50847.1| SSU ribosomal protein S12P methylthiotransferase [Pedobacter saltans DSM 12145] Length = 444 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 127/458 (27%), Positives = 220/458 (48%), Gaps = 39/458 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEK 79 V R V + GC N YDS + + V N++ + D++V+NTC + A ++ Sbjct: 13 VQPRVNVVTLGCSKNTYDSEILMGQLKGNHIDVVHEANNVRENDIVVINTCGFIDNAKQE 72 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 + + +LK+ +G V+V GC++Q E+ V+ G L L Sbjct: 73 SIDTILQYSDLKD----QGKVGKVIVTGCLSQRYTPELSAEIQNVDAWFGTND---LQNL 125 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 L V +Y E ERL + A+ I EGC++ C+FC +P R Sbjct: 126 L-------HAVGANYKYELLGERLLTTPSHF-------AYFKIAEGCNRPCSFCAIPLMR 171 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G +S + ++V A+ L NG E+ L+ Q++ + G L E+ +DLL +LS++ G Sbjct: 172 GKHVSFPIEELVKNAKNLAKNGTKELVLIAQDL-TYYGLDLYNER-KLADLLRNLSDVDG 229 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + +R ++P ++ + D + YL +P+Q SD +LKSM R T + ++ Sbjct: 230 IEWIRLQYAYPSGFPMEILDVMNERDNICKYLDMPLQHISDNMLKSMRRGTTKQKTIDLV 289 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++IR P+IA+ + I G+PGET+ DF + V++ + + F YS T ++ Sbjct: 290 NQIRDKVPNIAMRTTLICGYPGETERDFEEMKEWVEETRFDRLGCFTYSHEEKTQAFDLE 349 Query: 380 EQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEKHGKEKGKLVGR----SP 433 + + + VK +R+ + +Q +SF N VG +VLI+K KE +GR SP Sbjct: 350 DNIPQEVKEQRVEEIMDI--QQGISFDLNQEKVGNTYKVLIDK--KEGDYFIGRTEFDSP 405 Query: 434 WLQS-VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468 + + V+LN+ +G + ++I + LYG +V Sbjct: 406 EVDNEVLLNASTDYATVGSFVNIKIDRAEDFDLYGRIV 443 >gi|282854046|ref|ZP_06263383.1| MiaB-like protein [Propionibacterium acnes J139] gi|282583499|gb|EFB88879.1| MiaB-like protein [Propionibacterium acnes J139] Length = 481 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 132/465 (28%), Positives = 207/465 (44%), Gaps = 56/465 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + + G+ V+ +A+ +V+NTC E+A + L +L Sbjct: 14 SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145 + + G VV GC+A+ G E+ P + V+G Y RL +L+ Sbjct: 74 RGN----GTTTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 129 Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179 +R + V+ R + G+ R+R G +A Sbjct: 130 THVPRDRRTLLPISPVDRPIARAEVSVPGHGTAPDLPASVAPESGPRPTRRRLGTGPSAP 189 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L + GCD+ C FC +P RG +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK Sbjct: 190 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 248 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L + LL +L ++ GL +R + P ++ LI D ++PY L Q S Sbjct: 249 LRDLRL-LEKLLVTLDQVDGLEWIRVSYLQPAELRPGLIDTILAADKVVPYFDLSFQHAS 307 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+SM R A + IID IRS P+ S+FI GFPGETD D D + + Sbjct: 308 GPVLRSMRRFGDAESFLNIIDSIRSRCPEAGFRSNFITGFPGETDADVAVLADFLQRARL 367 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 A F YS GT + + VDE+V R RE D V Q E I Sbjct: 368 DVAGIFAYSDEEGTEAAGLDGHVDEDVITAR--------REDLADLTDELVSQRAEDRIG 419 Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453 G+ ++GR+ P + V +++ ++GDI+ V Sbjct: 420 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 464 >gi|119719528|ref|YP_920023.1| RNA modification protein [Thermofilum pendens Hrk 5] gi|119524648|gb|ABL78020.1| RNA modification enzyme, MiaB family [Thermofilum pendens Hrk 5] Length = 428 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 127/455 (27%), Positives = 221/455 (48%), Gaps = 42/455 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R +++++GC +N +S M + +G++ V S+++AD+++LNTC +R K++ L Sbjct: 3 RVYIETFGCWLNKGESNIMATLLKRRGHKVVESIENADVVILNTCAVRGDTETKIFRRLR 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---- 141 + L+ R +VV+GC+ + IL +P ++V P ++PE++E Sbjct: 63 ELEELRQKR-----GFRLVVSGCLVNVRPKSILDVAPSASLV-EPDAIEKIPEVVESEDK 116 Query: 142 ----RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 R R V DYS G + I+ GC C FC+ Sbjct: 117 LLIVRQYKASRNVLPDYS------------------GGAVHVVPIESGCLGSCAFCIEWV 158 Query: 198 TRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 TRG + S + +++ R + G EI L GQ+V A+ G D + + L E Sbjct: 159 TRGTGVKSYPIDVIIENVRAAVSKGAREIFLTGQDVAAY---GYDLGTNLYELVKRILEE 215 Query: 257 IKGLVRLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 + G R+R P + L++ D + L Y H+P QSG D++L+ M R++T Sbjct: 216 VDGEYRVRLGMMEPMLLGRFLKNLLELFRD-ERLYRYFHIPAQSGDDKVLRLMRRKYTVE 274 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 EY+ I++ IR +I +D IVGFPGE + +F+ T+ + ++ + + +Y+ R T Sbjct: 275 EYKGIVNTIRGSGWKFSIVTDIIVGFPGEGEAEFQNTLKFLREVMFDKVHVARYTFRPFT 334 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 G M V E VK +R + E N + VG+ EV++E +G LVGR+ Sbjct: 335 EGYVM-SGVPEPVKKQRSRLASRVALEVAYEINRSYVGEEREVVVEGTSI-RGDLVGRTI 392 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + VV+ + +G+I++V+I D +L G+++ Sbjct: 393 EYKPVVIKDQEARVGEIVRVKIVDATPVSLIGKVL 427 >gi|115618009|ref|XP_792404.2| PREDICTED: similar to CDK5 regulatory subunit associated protein 1-like 1 [Strongylocentrotus purpuratus] Length = 556 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 129/470 (27%), Positives = 211/470 (44%), Gaps = 59/470 (12%) Query: 22 IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 I+P Q+ FVK++GC N D M S GY + AD+ +LN+C ++ A + Sbjct: 56 IIPGTQKVFVKTWGCSHNNSDGEYMAGQLASYGYSITDDSSGADVWLLNSCTVKNPAED- 114 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 RN ++G L V+AGCV Q + + + V+G Q R+ E+ Sbjct: 115 ------HFRNEIQKAQQQGKAL--VLAGCVPQGQPKAKYMQG---VSVIGVQQIDRVVEV 163 Query: 140 LERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 +E G V + K + +D R+ + L I GC CT+C + Sbjct: 164 VEETVKGNTVRLFGQKKQGGKKIGGASLDLPKIRRNPLVEILAINTGCLNQCTYCKTKHA 223 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD----------------G 242 RG S ++V A++ D GVCEI L ++ A+ G+D Sbjct: 224 RGELGSYPPEELVARAKQSFDEGVCEIWLTSEDTGAY---GIDIGVTIVELLDQLVEVIP 280 Query: 243 EKCTF----SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 E C ++ Y L ++G+ R+ HPR S +LH+P+QSG Sbjct: 281 EGCMMRIGMTNPPYILDHLEGIARI---LRHPRVYS---------------FLHIPIQSG 322 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 SD +L M R + ++R+I++ +R P + I++D I GFP E++ DF T+ L+++ Sbjct: 323 SDSVLMDMKREYCTADFRKIVEFLRKEVPRVTIATDIICGFPHESEKDFEETLSLIEEFK 382 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F +Y PR GTP + QV K R L + Q +++D VG+ +VL+ Sbjct: 383 FPSVFINQYFPRPGTPAAKW-PQVPAQEKKRRTKALTVLFKSYQ-TYDDK-VGERFDVLV 439 Query: 419 EKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +K LV + + V++ +G I+KV I V L G ++ Sbjct: 440 TEVSHDKQYLVAHNKFYDQVLVPHNKEYLGRILKVEIESVGKHFLMGRVL 489 >gi|42523418|ref|NP_968798.1| Fe-S oxidoreductase [Bdellovibrio bacteriovorus HD100] gi|39575624|emb|CAE79791.1| Fe-S oxidoreductase [Bdellovibrio bacteriovorus HD100] Length = 443 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 112/437 (25%), Positives = 209/437 (47%), Gaps = 21/437 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS-MDDADLIVLNTCHIREKAAEKVYSFL 84 ++ V ++GC++N YD+ ++ + G+ V S DA + VLNTC + +A ++ ++ Sbjct: 2 KYQVHTFGCKVNTYDAGLIQKNLNASGFMPVVSGQKDARIHVLNTCAVTAEATKEAVRYI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--- 141 R++ +K+ +VV GC AQ + P +++V LP+LL Sbjct: 62 RRLK------VKDPF-CTIVVTGCAAQVDTGS-FSSLPGADLIVANSHKSSLPDLLNKHF 113 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R ++V ++ F++ + GG K+ FL IQ+GC+ FCT+C++PY RG Sbjct: 114 RGELTEKVFKSNI-----FKKEDLEAGGGIEKQHTRTFLKIQDGCNSFCTYCIIPYARGK 168 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S ++ +V+ L G E+ L G ++ + + + K DLL +L + Sbjct: 169 SRSIPVADLVNRINDLYAEGSREVVLTGVHIGDYEDQ-IGDRKYVMEDLLENLLAKTKMP 227 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R R ++ P ++S+ L+ + D L P+ H+ +QS + +L M R++T + ++ + Sbjct: 228 RFRLSSLEPVEVSERLLDLYQD-SRLCPHFHMSIQSANTDVLFHMKRKYTQEDVQKSLRA 286 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I P + D I GFP ET++ F+ T + + + + + F YS R GT + M Sbjct: 287 IADRVPGSFVGMDVITGFPTETEEQFQDTYNCLKDLPWTKLHVFPYSERQGTRAAAMDVS 346 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 V +V+AER L++ + +G VL+ K+ + G+ + W + Sbjct: 347 VYPHVRAERAARLRELSIARYTEQAQNQIGSTKRVLVLKNAAKGGQGLSHDYWPVDIAGA 406 Query: 442 SK--NHNIGDIIKVRIT 456 +H G + V++T Sbjct: 407 ESFLDHWAGQEVDVKVT 423 >gi|314966789|gb|EFT10888.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL082PA2] gi|314981126|gb|EFT25220.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL110PA3] gi|315091951|gb|EFT63927.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL110PA4] gi|315093292|gb|EFT65268.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL060PA1] gi|315103451|gb|EFT75427.1| MiaB-like tRNA modifying enzyme YliG [Propionibacterium acnes HL050PA2] gi|327327616|gb|EGE69392.1| Fe-S oxidoreductase [Propionibacterium acnes HL103PA1] Length = 474 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 132/465 (28%), Positives = 207/465 (44%), Gaps = 56/465 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS + + G+ V+ +A+ +V+NTC E+A + L +L Sbjct: 7 SMGCARNDVDSEELAARMEAGGFRLVDDPAEAETVVVNTCGFIEQAKKDSVDTLLAAADL 66 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELLERARF- 145 + + G VV GC+A+ G E+ P + V+G Y RL +L+ Sbjct: 67 RGN----GTTTSVVAVGCMAERYGRELAESLPEADAVLGFDDYGDIAGRLRTILDGGSLE 122 Query: 146 -----GKRVVDTDYSVEDKFERLSIVDGGY------------------NRKR---GVTAF 179 +R + V+ R + G+ R+R G +A Sbjct: 123 THVPRDRRTLLPISPVDRPIARAEVSVPGHGTAPDLPASVAPESGPRPTRRRLGTGPSAP 182 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L + GCD+ C FC +P RG +SR ++++V+EAR L+D+GV E+ L+ +N +++ GK Sbjct: 183 LKMASGCDRRCAFCAIPRFRGSYLSRPIAEIVEEARWLVDHGVKEVFLVSENSSSY-GKD 241 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L + LL +L ++ GL +R + P ++ LI D ++PY L Q S Sbjct: 242 LRDLRL-LEKLLVTLDQVDGLEWIRVSYLQPAELRPGLIDTILAADKVVPYFDLSFQHAS 300 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+SM R A + IID IRS P+ S+FI GFPGETD D D + + Sbjct: 301 GPVLRSMRRFGDAESFLNIIDSIRSRCPEAGFRSNFITGFPGETDADVAVLADFLQRARL 360 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 A F YS GT + + VDE+V R RE D V Q E I Sbjct: 361 DVAGIFAYSDEEGTEAAGLDGHVDEDVITAR--------REDLADLTDELVSQRAEDRIG 412 Query: 420 KHGKE-----KGKLVGRS----PWLQSVV--LNSKNHNIGDIIKV 453 G+ ++GR+ P + V +++ ++GDI+ V Sbjct: 413 TRGRVMVEEIDEAVIGRAEHQGPEVDGCVTLVDAAAVSVGDIVDV 457 >gi|57242028|ref|ZP_00369968.1| MiaB-like tRNA modifying enzyme [Campylobacter upsaliensis RM3195] gi|57017220|gb|EAL54001.1| MiaB-like tRNA modifying enzyme [Campylobacter upsaliensis RM3195] Length = 413 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 112/399 (28%), Positives = 203/399 (50%), Gaps = 39/399 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F+K++GC+ N+YDS ++ + + +E N+ +AD++++N+C + A + ++ Sbjct: 3 KIFLKTFGCRTNIYDSELIKG--YIKDFELTNNEKEADIVLINSCTVTNGADSGLKTY-- 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144 I +LK + IK V++ GC A ++G+E+L I V+ G ++ E L E+ R Sbjct: 59 -INSLKKNNIK------VILTGCAAVSKGKELLDNGAIFGVL-GASNKAKINEFLKEKKR 110 Query: 145 FGK----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 F + +D D IV N + AF+ IQEGCD C++C++P RG Sbjct: 111 FYELGNLNFIDKD-----------IVKDYENHTK---AFVKIQEGCDFNCSYCIIPSVRG 156 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S S ++++ + LI NG EI L G N+ ++ K DG T LL + +I GL Sbjct: 157 RSRSVKESDLLEQIKILIQNGYTEIVLTGTNIGSYGLK--DG--TTLGKLLQKMMQISGL 212 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + + ++ D +L +LH+ +Q S+ +L+ M RR + ++ Sbjct: 213 KRIRLGSLEPAQIDESFMEIL-DEKLLERHLHIALQHTSETMLRIMRRRSHTKDDLRLFQ 271 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + S A+ +DFIVG PGE+++ ++ + + +F +SPR T + + Sbjct: 272 TLAS--KGFALGTDFIVGHPGESEELWQEALRNFTEFKLTHLHAFIFSPRNNTHSATLKN 329 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 + ++ ERL L+ +++ F A + +EVLIE Sbjct: 330 TIKGDLAKERLNTLKAIVQKNNFEFRKANKVK-LEVLIE 367 >gi|295103489|emb|CBL01033.1| MiaB-like tRNA modifying enzyme [Faecalibacterium prausnitzii SL3/3] Length = 431 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 115/431 (26%), Positives = 213/431 (49%), Gaps = 25/431 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N+ ++ +E +F + G+ + AD+ ++N+C + +K +L R + Sbjct: 7 TLGCKVNLNETGALEQLFRANGFTIAQEGEAADVFIVNSCTVTNFGDQKSRKWLRRKK-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRV 149 +E + V+ GC QA EE + ++V G + + E +++ G +R+ Sbjct: 65 -----RENPGAVTVLTGCYPQAFPEEAAQFME-ADLVCGNGDHKAILENVQKLLDGHERI 118 Query: 150 VD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V + ++FE L + + + AF+ +++GC++ C +CV+P RG SR+ Sbjct: 119 VAIAPHQRGEQFEELPVERFETHTR----AFIKVEDGCNRQCAYCVIPRARGPVRSRAEE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++ E +L G E+ L ++ ++ GLD +L+ +++ G+ R+R + Sbjct: 175 SILAELHQLAAAGYREVVLSAISLPSY---GLD-TGTNLVELVEKCAQVPGIERIRLGSL 230 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--- 325 P ++ I +D L P HL +QSG L+ M R +TA EY Q++++IR+ Sbjct: 231 DPDMLTPEFISRLAAVDKLCPQFHLSLQSGCTATLRRMRRVYTAQEYAQVVEQIRAAYGS 290 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RP ++ ++D I GFPGET +DF + + KIG+ + F YS R GTP + +Q+ E Sbjct: 291 RP-VSFTTDCICGFPGETAEDFEESCAFLKKIGFLKVHVFPYSRRSGTPAYDFPDQIHER 349 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVLNSKN 444 K ER + + + A G EVL+E G L G + VV+++ Sbjct: 350 EKQERSRRMNAAAEQVRCEALAAFEGTEDEVLLET--PLSGTLFTGYTRLYIPVVVSAPG 407 Query: 445 HNIGDIIKVRI 455 G I++V++ Sbjct: 408 CESGQIVRVKL 418 >gi|262277882|ref|ZP_06055675.1| conserved hypothetical protein [alpha proteobacterium HIMB114] gi|262224985|gb|EEY75444.1| conserved hypothetical protein [alpha proteobacterium HIMB114] Length = 419 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 116/396 (29%), Positives = 196/396 (49%), Gaps = 30/396 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGC++N+Y+S M+ + E+ N + I+ N+C + +A +KV + IR Sbjct: 8 TYGCRLNIYESEVMQ-----KHLEKANL---KNYILFNSCSVTNEAKKKV---IDDIR-- 54 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--RARFGKR 148 K+ + ++V GC +Q + + L S V+ V+G + L+ + + Sbjct: 55 --KFKKKYPNKKIIVTGCASQIDSKTFLSMSE-VDHVIGNKEKMEFETFLKISNEKIANK 111 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + D +E K ++ N R AF+ IQ GCD CTFC +PY RG S ++ Sbjct: 112 ISDI---MELKTIAPQFIESFENHSR---AFIQIQNGCDHRCTFCTIPYGRGNSRSLPIN 165 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRYTT 267 ++++ + L + G EI L G ++ ++ G LD EK L+ + L K L RLR ++ Sbjct: 166 NILEQIKMLNEKGFNEIILTGVDLTSY-GPDLD-EKVNLGKLVEAILKNNKELKRLRLSS 223 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++ L + +MP+ HL +QSG + ILK M RRH ++I+ RP Sbjct: 224 LDSIEIDSLLFEILSSEKRVMPHFHLSMQSGDNMILKRMKRRHQREHAIDFCNKIKLARP 283 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 ++ +D I GFP ET++ F T+ ++D+ F +SP P S M QV +N+ Sbjct: 284 EVIFGADLIAGFPTETEEMFHNTLKIIDECDLTLLHIFPFSPMEKAPASKM-PQVPKNII 342 Query: 388 AERLLCLQKKLR-EQQVSFNDACVGQIIEVLIEKHG 422 ER L++K + + + F D VG+ + VL EK+ Sbjct: 343 KERAKILREKGQLKMKDKFKDT-VGKTLNVLTEKNS 377 >gi|227872341|ref|ZP_03990694.1| possible tRNA 2-methylthioadenine synthetase [Oribacterium sinus F0268] gi|227841805|gb|EEJ52082.1| possible tRNA 2-methylthioadenine synthetase [Oribacterium sinus F0268] Length = 230 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 132/214 (61%), Gaps = 2/214 (0%) Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 E+C+F +LL ++++ GL RLR+ T +P+D SD L++ + + + ++HLP+QSGS I Sbjct: 5 EECSFPELLAKIAKLPGLKRLRFMTPNPKDFSDELLQVMKENENICNHIHLPLQSGSTAI 64 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 LK MNR ++ Y ++ +IR V PD+++++D IVGFPGET++DF+ TM++V + A Sbjct: 65 LKRMNRHYSKESYMALVKKIREVLPDVSLTTDIIVGFPGETEEDFQDTMEVVAYSKFDSA 124 Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 F+F+YS R GTP + E V E+V ER L + +R +G+++EVL+E+ Sbjct: 125 FTFQYSKRTGTPAAKW-EAVPEDVVKERFQRLLEHIRLHSEEREGRDLGKVMEVLVEEKD 183 Query: 423 KE-KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455 KE + L GR V IG+I+ VR+ Sbjct: 184 KESENMLTGRLSNNVLVHFEGGERLIGEIVPVRL 217 >gi|321479315|gb|EFX90271.1| hypothetical protein DAPPUDRAFT_300126 [Daphnia pulex] Length = 560 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 130/466 (27%), Positives = 212/466 (45%), Gaps = 54/466 (11%) Query: 22 IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 I+P Q+ +VK++GC N DS M + GY + +ADL +LN+C ++ A + Sbjct: 61 IIPGTQKIWVKTWGCAHNNSDSEYMAGQLAAYGYSLTDEKYEADLWLLNSCTVKTPAEDH 120 Query: 80 VYSFL--GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-----VVGPQT 132 + + GR R VVVAGCV Q + P N ++G Q Sbjct: 121 FKNEIDDGRARGTP-----------VVVAGCVPQGQ--------PKANYLQGLSIIGVQQ 161 Query: 133 YYRLPELLERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 R+ E++E G R++ T E K + + RK + + I GC C Sbjct: 162 IDRVVEVVEETLKGHSVRLLGTKKDAEKKKTGGASLLLPKIRKNPLIEIIPINTGCLNQC 221 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 T+C + RG S ++V A + GVCEI L ++ A+ G+ + + +L Sbjct: 222 TYCKTKHARGELGSYPPEEIVARAIQSFQEGVCEIWLTSEDTGAY-GRDIGS---SLPEL 277 Query: 251 LYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 L L ++ G+ Y H +++ L + +LHLPVQSGSD + Sbjct: 278 LRQLVQVIPDGCMLRLGMTNPPYILEHLEAIAEILNHPR-----VYAFLHLPVQSGSDCV 332 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L M R + ++ ++++ +R P I+I++D I GFP ET+ DF TM+L K + Sbjct: 333 LTDMKREYCVADFERVVNFLRERVPGISIATDIICGFPTETEQDFDLTMELCSKHRFPSL 392 Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEK 420 F ++ PR+GTP M E V +++ K+L E S+ D VGQ VL+ Sbjct: 393 FINQFFPRVGTPAYRM-----ERVPTKQVKNRTKRLSELFKSYQPYDDQVGQRQSVLVTD 447 Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 +K VG + V++ + + +G +++V IT +L E Sbjct: 448 ISHDKNYYVGHNKEYVQVLVPMEPNYMGKMVEVLITSASKFSLMSE 493 >gi|325279061|ref|YP_004251603.1| MiaB-like tRNA modifying enzyme [Odoribacter splanchnicus DSM 20712] gi|324310870|gb|ADY31423.1| MiaB-like tRNA modifying enzyme [Odoribacter splanchnicus DSM 20712] Length = 428 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 116/397 (29%), Positives = 193/397 (48%), Gaps = 29/397 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + +G E V + AD+ V+NTC + + A +K + +I Sbjct: 12 TLGCKLNFSETSTIRHSLEKEGTETVADKEGADIFVINTCSVTDMAEKKGRQLIRKI--- 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I +VV GC AQ +EI+ V++V+G + + L+ ++ Sbjct: 69 ----IHHNPGAYIVVVGCYAQLRAKEIMAIDG-VSLVLGAGEKFNVAHYLQHLEEQEK-- 121 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +S D F ++S D Y+ FL IQ+GCD FCT+C +P+ RG S SL ++ Sbjct: 122 QEPHSC-DIF-KISNFDLAYSFGDRTRCFLKIQDGCDYFCTYCTIPFARGRSRSASLPRI 179 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 +D R++ G+ E+ L G N + G+G D F LL L + + R R ++ P Sbjct: 180 LDALREVAGKGIQEVILTGVNTGDF-GRGTD---MNFLQLLQQLDRQEEIARFRISSIEP 235 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++D +I+ MP+ H+P+QSGSD +LK M+RR+ + I IR + PD Sbjct: 236 NLLTDEIIEFVATSKRFMPHFHIPLQSGSDEVLKLMHRRYDRELFAGKIRTIRHLLPDAF 295 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM---LEQVDENVK 387 I D I G GET+ F + ++ + ++ F YS R GT ++ + Q +++ + Sbjct: 296 IGVDVIAGMRGETEACFEDALRFIETLDISRLHVFPYSERQGTKALDIPLTVPQEEKHRR 355 Query: 388 AERLLCL-QKKL---------REQQVSFNDACVGQII 414 RL+ + QKKL + V F D +GQ I Sbjct: 356 VNRLISVSQKKLTAFYHRFEGETRPVLFEDNKIGQYI 392 >gi|86142306|ref|ZP_01060816.1| putative Fe-S oxidoreductase [Leeuwenhoekiella blandensis MED217] gi|85831058|gb|EAQ49515.1| putative Fe-S oxidoreductase [Leeuwenhoekiella blandensis MED217] Length = 435 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 135/457 (29%), Positives = 224/457 (49%), Gaps = 53/457 (11%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87 V + GC NVYDS + + E V+ ++ +++V+NTC I E V + L + Sbjct: 13 VVTLGCSKNVYDSEVLMGQLKANQKEVVHE-EEGNVVVINTCGFIANAKEESVNTILEYV 71 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 + ++ + + V V GC+++ ++ + P V+ G LP LL Sbjct: 72 QKKEDGIVDK-----VFVTGCLSERYKPDLQKEIPNVDQYFGTT---ELPGLL------- 116 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + + DY E ERL+ Y A+L I EGCD+ C+FC +P RG S + Sbjct: 117 KALGADYKHELIGERLTTTPKNY-------AYLKIAEGCDRPCSFCAIPLMRGGHKSTPI 169 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKGL--VRLR 264 +V EA+KL +G+ E+ L+ Q++ + GLD K + LL L +++G+ +RL Sbjct: 170 EHLVTEAKKLAASGIKELILIAQDLTYY---GLDLYKERALAKLLRELVKVEGIEWIRLH 226 Query: 265 YT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDR 321 Y T P D+ D + + + Y+ +P+Q S ++LKSM RR T YE ++ Sbjct: 227 YAFPTGFPMDVLDVM----NEEPKVCNYIDIPLQHISTKLLKSM-RRGTTYEKTNALLKT 281 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R P +AI + IVG+PGET +DF D V ++ + + F YS T N+ + Sbjct: 282 FREKVPQMAIRTTLIVGYPGETQEDFELLRDWVKEMRFERLGCFTYSHEENTHAYNLEDD 341 Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434 V E VK ER ++ LQ ++ + N +G+ ++I++ KE VGR SP Sbjct: 342 VPEEVKMERANEIMALQSQISWE---LNQEKIGKEYRIVIDR--KEGNYFVGRTEFDSPD 396 Query: 435 LQS-VVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + + V++++ H + G+ V+ITD + LY V Sbjct: 397 VDNEVLIDATQHYLKTGEYTWVKITDAEDFDLYAAPV 433 >gi|325856357|ref|ZP_08172073.1| tRNA methylthiotransferase YqeV [Prevotella denticola CRIS 18C-A] gi|325483541|gb|EGC86513.1| tRNA methylthiotransferase YqeV [Prevotella denticola CRIS 18C-A] Length = 477 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 117/407 (28%), Positives = 188/407 (46%), Gaps = 23/407 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF+ + GC++N ++ ++ G + AD+ ++NTC + E A K + Sbjct: 40 RFY--TLGCKLNFSETSTFARTLYNMGVREAKKSEQADICLINTCSVTEVADHKCRQVIH 97 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE---- 141 R+ +++ V+V GC AQ E + V++V+G L + L Sbjct: 98 RM-------VRQNPGAFVIVTGCYAQLESAAVAGIEG-VDLVLGSNEKADLIQYLSDAWN 149 Query: 142 RARFGKR--VVDTDY-SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 R GK +Y SV K + +R FL +Q+GC FCT+C +PY Sbjct: 150 RPEAGKEHGASPAEYHSVRTK--DIRSFQPSCSRGNRTRYFLKVQDGCSYFCTYCTIPYA 207 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG + +++ +V +A + G EI L G N+ + GE+ F DL+ +L ++ Sbjct: 208 RGFSRNPTIASLVSQAEEAAHEGGREIVLTGVNIGDF--GETTGER--FLDLVKALDRVE 263 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R R ++ P + D LI MP+ H+P+QSGSD +LK M+RR+ + Sbjct: 264 GIRRYRISSLEPDLIDDELIAYCAQSRAFMPHFHIPLQSGSDEVLKLMHRRYDTALFAHK 323 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I I+ + PD I D +VG GE + F ++ + Q F YS R GT ++ Sbjct: 324 IRLIKEMMPDAFIGVDVMVGSRGERLEYFEDCYRFLESLPVTQLHVFPYSERPGTSALSI 383 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK 425 VD+ K R L K E+ +F A +GQ +VL EK + K Sbjct: 384 PYVVDDREKKRRSHRLLKLSDEKTHAFYAAHIGQEADVLFEKAPRGK 430 >gi|257054056|ref|YP_003131889.1| MiaB-like tRNA modifying enzyme [Halorhabdus utahensis DSM 12940] gi|256692819|gb|ACV13156.1| MiaB-like tRNA modifying enzyme [Halorhabdus utahensis DSM 12940] Length = 424 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 122/451 (27%), Positives = 205/451 (45%), Gaps = 44/451 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ +++YGC N +S +E G+ V+ AD+ +LNTC + EK Sbjct: 3 RYHIETYGCTSNRGESQAIERRLRQGGHYPVDDPSRADVAILNTCTVVEKTE-------- 54 Query: 86 RIRNL--KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 RN+ + + + E +V+ GC+A A+GE + ++ + + E + Sbjct: 55 --RNMLRRAAELDEETPADLVITGCMALAQGEAFDDAAVDAEIL----HWDEVAEYVRNG 108 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 DTD ++D VT L I GC C++C+ G Sbjct: 109 ECPTATPDTDVVLDD-----------------VTGILPIARGCLSDCSYCITKQATGTID 151 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S + + V +AR+L+D G E+ + GQ+ + GL+ + +LL + E+ G R+ Sbjct: 152 SPPVEENVQKARELLDAGARELRITGQDTGVY---GLENGERKLPELLTRICELPGEFRV 208 Query: 264 RYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R ++P+ M + L + D L +LH PVQSGSD +L M RRH E+++I+ Sbjct: 209 RVGMANPKGVYGMHEELADVFAEHDELYNFLHAPVQSGSDDVLVDMRRRHRTPEFKEIVA 268 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +++DFIVGFP ETD DF+ ++DL+ + + ++S R GT + L+ Sbjct: 269 AFDERLEYWTLATDFIVGFPTETDADFQQSLDLLRDVEPEKVNVTRFSKRPGTDAAE-LD 327 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 + +K ER + + + +DA VG+ VL+ + G E LVG + V + Sbjct: 328 GLGGTIKKERSSAMTDLKMDVVGAAHDAMVGEEHTVLLTQDGTED-SLVGYDEAHRQVAI 386 Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELV 468 S +GD + V IT GE + Sbjct: 387 PEAESMGLELGDFVDVEITGHNTVYALGEPI 417 >gi|283853643|ref|ZP_06370877.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio sp. FW1012B] gi|283570976|gb|EFC19002.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio sp. FW1012B] Length = 432 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 134/432 (31%), Positives = 197/432 (45%), Gaps = 41/432 (9%) Query: 31 SYGCQMNVYDS-LRMEDMFFSQGYERVNSMDD---ADLIVLNTCHIREKAAEK----VYS 82 S GC N D+ + + + F R +DD ADL+V+NTC A E+ + Sbjct: 11 SLGCPKNRVDTEVALGGLPF-----RTTPVDDPRAADLVVINTCSFIGPAVEESVAAILE 65 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 IR+L + R K + V GC+ GE++ R P V+V P LP Sbjct: 66 AAEAIRDL-SPRPK------LAVMGCLPARFGEDLRRGLPEVDVWGLPTELDILP----- 113 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G+ D RL+ Y A+L I EGCD C +C +P RG Sbjct: 114 ---GRLAEALGAEAADPTGRLASTPPSY-------AYLKIAEGCDHACRYCTIPSIRGGL 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR L +V+EAR L+D GV E+ ++ Q+V A+ G+ L G K LL L + GL Sbjct: 164 VSRPLPGLVEEARGLLDRGVSELVVVAQDVTAY-GRDL-GLKDGLQALLEKLLPLSGLKW 221 Query: 263 LRYTTSHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 LR +P ++D L+ G +PY +P Q +L +M R A + ++ R Sbjct: 222 LRLLYLYPSGVTDGLLSFLAGAGRPFVPYFDIPFQHVHPEMLAAMARPKAA-DADTVVGR 280 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R PD A+ S FIVG PGE + F+A ++ V + F Y GTP + M Q Sbjct: 281 VRRHFPDAALRSTFIVGLPGEKKEHFQALLEFVQRARLTHVGVFPYHAEEGTPAAIMPGQ 340 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVL 440 V +VKA R + + D VG EVL++ HG+ G VGR+ W Q+ + Sbjct: 341 VRRDVKARRAAAVMAAQKAISADILDGYVGTDQEVLVDAVHGEWPGLHVGRT-WFQAPEI 399 Query: 441 NSKNHNIGDIIK 452 + + G +K Sbjct: 400 DGVTYVSGPGVK 411 >gi|302558044|ref|ZP_07310386.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces griseoflavus Tu4000] gi|302475662|gb|EFL38755.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces griseoflavus Tu4000] Length = 491 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 131/482 (27%), Positives = 213/482 (44%), Gaps = 44/482 (9%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G++ V ++AD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLEADGWQLVEDAEEADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 L +LK +G VV GC+A+ G+E+ P + V+G Y + + L Sbjct: 61 VDALLEANDLKG----QGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRL 116 Query: 141 --------------------------ERARFGKRVVDTDYSVEDKFERLSIVDGGYN--R 172 ER V + D E L+ G R Sbjct: 117 QTILNGGIHASHTPRDRRKLLPISPAERQDSAADVALPGHGPVDLPEGLAPASGPRAPLR 176 Query: 173 KR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229 +R A + + GCD+ C+FC +P RG ISR S V++E R L + GV E+ L+ Sbjct: 177 RRLDGSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEVMLVS 236 Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289 +N N GK L G+ LL L+E+ G+ R+R + P +M LI ++P Sbjct: 237 EN-NTSYGKDL-GDIRLLESLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTPKVVP 294 Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349 Y L Q + +L++M R + +++D IRS P + S+FIVGFPGE+ D Sbjct: 295 YFDLSFQHSAPDVLRAMRRFGDTDRFLELLDTIRSKAPQAGVRSNFIVGFPGESAADLAE 354 Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409 ++ F YS GT + ++DE+V AERL + + E + Sbjct: 355 LERFLNHARLDAVGVFGYSDEEGTEAATYDGKLDEDVVAERLARVSRLAEELVSQRAEER 414 Query: 410 VGQIIEVLIEKHGKEK---GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLY 464 VG+ + VL+E +E+ G+ ++P VL + + +IG +++ ++ + L Sbjct: 415 VGETVHVLVESVDEEEGVHGRAAHQAPETDGQVLLTSGEGLSIGRMVEAKVIGTEGVDLV 474 Query: 465 GE 466 E Sbjct: 475 AE 476 >gi|302554558|ref|ZP_07306900.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces viridochromogenes DSM 40736] gi|302472176|gb|EFL35269.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces viridochromogenes DSM 40736] Length = 493 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 125/437 (28%), Positives = 193/437 (44%), Gaps = 39/437 (8%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G+ V ++AD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLEADGWRLVEDAEEADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 L +LK G VV GC+A+ G+E+ P + V+G Y + + L Sbjct: 61 VDALLEANDLKG----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYANISDRL 116 Query: 141 --------------------------ERARFGKRVVDTDYSVEDKFERLSIVDGGYN--R 172 ER V ++ D E L+ G R Sbjct: 117 QTILNGGIHAAHTPRDRRKLLPISPAERQDSADAVALPGHAPADLPEGLAPASGPRAPLR 176 Query: 173 KR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229 +R A + + GCD+ C+FC +P RG ISR S V++E R L + GV EI L+ Sbjct: 177 RRLDGSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEIMLVS 236 Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289 +N N GK L G+ LL L+E+ G+ R+R + P +M LI + P Sbjct: 237 EN-NTSYGKDL-GDIRLLESLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTPKVAP 294 Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349 Y L Q + +L++M R + +++D IR+ P+ + S+FIVGFPGE++ D Sbjct: 295 YFDLSFQHSAPGVLRAMRRFGDTDRFLELLDTIRNKAPEAGVRSNFIVGFPGESEADLAE 354 Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409 ++ F YS GT + ++DE+V AERL + + E + Sbjct: 355 LERFLNGARLDAIGVFGYSDEEGTEAATYDGKLDEDVVAERLARVSRLAEELVSQRAEER 414 Query: 410 VGQIIEVLIEKHGKEKG 426 VGQ + VL+E E+G Sbjct: 415 VGQTVHVLVESVDDEEG 431 >gi|66576257|gb|AAY51688.1| MiaB-like tRNA modifying enzyme [Chlorobium tepidum TLS] Length = 446 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 127/440 (28%), Positives = 216/440 (49%), Gaps = 47/440 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD-ADLIVLNTCHIREKAAEKVYSFLGRI-R 88 + GC++N ++ + D SQG++ +N++DD AD+++++TC + +A K + +I R Sbjct: 10 TLGCKVNYAETSSIVDALVSQGWQ-LNAIDDGADVLIIHTCAVTGEAERKSRQQIRKIIR 68 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143 N SR+ V GC AQ + + I V+ V+G +Y L + Sbjct: 69 NHPGSRVG--------VIGCYAQLDPKRIADIKG-VSFVLGTTDKFEIAWYDGESLPNDS 119 Query: 144 RFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 +V VD + LS + G R AFL IQ+GC C +C +P RG Sbjct: 120 EPLVKVSPVDKAITAHPACSMLSQPEKGRTR-----AFLKIQDGCSFGCAYCSIPLARGR 174 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S SLS V+D A+K+ D G EI L G N+ ++ DG+ S LL L I + Sbjct: 175 SRSVSLSTVLDRAQKIADAGYREIVLTGINIGDYQ----DGDT-RLSGLLRRLETID-VS 228 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R ++ P+ + D LI +MP+ HLP+QSGSD +L++M R + YR+ + + Sbjct: 229 RIRISSVEPQLLDDELIDIVAASGKIMPHFHLPLQSGSDTVLRAMRRHYDTAFYRERLMK 288 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 S+ AI +D +VG+PGE++ DF ++++ A F SPR PG+ + + Sbjct: 289 ALSLIRGCAIGADVMVGYPGESERDFEEMCRFIEELPVAYLHVFTCSPR---PGTKLFAE 345 Query: 382 VDE-----------NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 + E + +A RL + +++ + F +A +G ++VL E+ G V Sbjct: 346 IAEKKLIRIPSAESSSRAARLGVIGERIERR---FAEAFIGSTLKVLFEEASALPGGAVR 402 Query: 431 RSPWLQSVVLNSKNHNIGDI 450 S + + + S + + G++ Sbjct: 403 WSGYSEHYLRVSVDTSAGEL 422 >gi|315638251|ref|ZP_07893433.1| 2-methylthioadenine synthetase [Campylobacter upsaliensis JV21] gi|315481787|gb|EFU72409.1| 2-methylthioadenine synthetase [Campylobacter upsaliensis JV21] Length = 413 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 112/399 (28%), Positives = 203/399 (50%), Gaps = 39/399 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F+K++GC+ N+YDS ++ + + +E N+ +AD++++N+C + A + ++ Sbjct: 3 KIFLKTFGCRTNIYDSELIKG--YIKDFELTNNEKEADIVLINSCTVTNGADSGLKTY-- 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144 I +LK + IK V++ GC A ++G+E+L I V+ G ++ E L E+ R Sbjct: 59 -INSLKKNNIK------VILTGCAAVSKGKELLDNGAIFGVL-GASNKAKINEFLKEKKR 110 Query: 145 FGK----RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 F + +D D IV N + AF+ IQEGCD C++C++P RG Sbjct: 111 FYELGNLNFIDKD-----------IVKDYENHTK---AFVKIQEGCDFNCSYCIIPSVRG 156 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S S ++++ + LI NG EI L G N+ ++ K DG T LL + +I GL Sbjct: 157 RSRSVKESDLLEQIKILIQNGYTEIVLTGTNIGSYGLK--DG--TTLGKLLQKMMQISGL 212 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + + ++ D +L +LH+ +Q S+ +L+ M RR + ++ Sbjct: 213 KRIRLGSLEPAQIDESFMEIL-DEKLLERHLHIALQHTSETMLRIMRRRSHTKDDLRLFQ 271 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + S A+ +DFIVG PGE+++ ++ + + +F +SPR T + + Sbjct: 272 TLAS--KGFALGTDFIVGHPGESEELWQEALRNFTEFKLTHLHAFIFSPRNNTHSATLKN 329 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 + ++ ERL L+ +++ F A + +EVLIE Sbjct: 330 TIKGDLAKERLNTLKAIVQKNNFEFRKANKIK-LEVLIE 367 >gi|195150351|ref|XP_002016118.1| GL10666 [Drosophila persimilis] gi|194109965|gb|EDW32008.1| GL10666 [Drosophila persimilis] Length = 553 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 132/463 (28%), Positives = 225/463 (48%), Gaps = 42/463 (9%) Query: 20 QCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 + ++P Q+ FVK++GC N DS M + GY +++ D+ADL +LN+C ++ + Sbjct: 65 ESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGY-KLSGKDEADLWLLNSCTVKNPSE 123 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRL 136 + RN S + G VVVAGCV Q A + LR V+G Q R+ Sbjct: 124 DT-------FRNEIESGMSNGKH--VVVAGCVPQGAPKSDYLRGL----SVIGVQQIDRV 170 Query: 137 PELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 E++E G V + + V + + + RK + ++I GC CT+C Sbjct: 171 VEVVEETLKGHSVRLLQNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKT 230 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 + RG S ++VD AR+ G CEI L ++ A+ G+ + + +LL+ L Sbjct: 231 KHARGDLASYPPEEIVDRARQSFAEGCCEIWLTSEDTGAY-GRDIGS---SLPELLWKLV 286 Query: 256 EI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 E+ G+ Y H +++ L + +LH+PVQSGSD +L M Sbjct: 287 EVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYAFLHVPVQSGSDSVLGEMK 341 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + ++ ++D +R P + I++D I GFP ET++DF TM L + + F ++ Sbjct: 342 REYCRKDFEHVVDFLRERVPGVTIATDIICGFPTETEEDFEETMTLCGRYRFPSLFINQF 401 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEK 425 PR GTP + M E++ N+ +R K+L + S+ VG++ VL+ + +K Sbjct: 402 FPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAQRVGEMYTVLVTEISHDK 456 Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VG + + V+L +++ +G + VRIT V ++ GE++ Sbjct: 457 LHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSVSKFSMVGEIL 499 >gi|296446184|ref|ZP_06888132.1| MiaB-like tRNA modifying enzyme [Methylosinus trichosporium OB3b] gi|296256378|gb|EFH03457.1| MiaB-like tRNA modifying enzyme [Methylosinus trichosporium OB3b] Length = 400 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 110/356 (30%), Positives = 165/356 (46%), Gaps = 55/356 (15%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++NV DS Q + DL+++NTC + +A + + R+ Sbjct: 6 VVTFGCRLNVVDS---------QSLLSDARVKGGDLVIVNTCAVTAEATRQARQAIRRLH 56 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 + S +VVAGC A+ + P ++ + + R Sbjct: 57 RERPS-------AEIVVAGCAAR----------------IDPASFATMAGV-------TR 86 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V+ +D S +G AFL +Q GCD C+FCV+P+ RG S + + Sbjct: 87 VLG---EAQDAPLARSASEGQTR------AFLAVQNGCDHRCSFCVIPFGRGPSRSAAPA 137 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRYTT 267 V+ EAR+L+ G EI L G ++ ++R E T L L L RLR ++ Sbjct: 138 DVIAEARRLVAVGRREIVLTGVDLTSYRH-----EDVTLGALAREILRATPQLERLRLSS 192 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 + L+ G+ L P+LHL +QSG D LK M RRH+ + +R RP Sbjct: 193 IDCIETDADLLDLMGEEPRLAPHLHLSLQSGDDLTLKRMKRRHSRADAIHFCAEMRDARP 252 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 DI + +DFI GFP ET+D F T+DLV++ G F +SPR GTP + M QVD Sbjct: 253 DIVLGADFIAGFPTETEDMFARTLDLVEECGLTHLHVFPFSPRPGTPAARM-PQVD 307 >gi|189218450|ref|YP_001939091.1| 2-methylthioadenine synthetase [Methylacidiphilum infernorum V4] gi|238066396|sp|B3DYX1|RIMO_METI4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|189185308|gb|ACD82493.1| 2-methylthioadenine synthetase [Methylacidiphilum infernorum V4] Length = 445 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 125/444 (28%), Positives = 214/444 (48%), Gaps = 34/444 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N+ DS M G S AD++++NTC I E + + L I Sbjct: 14 SLGCSKNLVDSEIMLGKLLEAGAVLTASPHQADILLINTCGFILPAKKESIDTILAAIHR 73 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + K+ +VV+GC+ Q G+E+ P V++ +G L ++ + + K++ Sbjct: 74 RTTTSKKQK----IVVSGCLYQRYGKELSALLPEVDLFLG------LDDIPKIDLYVKQL 123 Query: 150 VDTDYSVED----KFERLSIVDGGYNRKRGVTA---FLTIQEGCDKFCTFCVVPYTRGIE 202 +DT S ++ F I D + R + + +L I EGC+ CTFC++P RG Sbjct: 124 IDTPPSSKEMPALNFSPRFIPDFEHPRLKLTPSHFGYLKIAEGCNHPCTFCIIPRIRGRY 183 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR++ VV EA +I G EI L+ Q+ + +G+ DLL SL ++G Sbjct: 184 RSRTIQNVVAEAEAMIRRGTKEIILVSQDTTFYGRDLSNGQSSLLVDLLDSLETLEGDFW 243 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R +HP + LI+ + Y+ +P+Q S+ +L+ M R+ R+++ + Sbjct: 244 IRLLYTHPAHWNASLIEKFSTSKKIAKYIDIPIQHISNPVLERMQRKTEESYIRELLAEM 303 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ + AI + IVGFPGE+++DF+ V + + F YS GT M QV Sbjct: 304 RTKIKNAAIRTTLIVGFPGESEEDFQKLCSFVSSFKFDRLGVFPYSAEEGTKAEKMNGQV 363 Query: 383 DENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW----L 435 E VK A++++ LQK++ +++ N VG+ ++VL++ G V R+ W + Sbjct: 364 PEIVKKRRAKKIMELQKEIAKEK---NKELVGKTLKVLVDYPG------VARTEWDCPDV 414 Query: 436 QSVVLNSKNHNIGDIIKVRITDVK 459 ++V + G +V+I D K Sbjct: 415 DALVHVPYHLPPGHFTEVKIVDFK 438 >gi|84685287|ref|ZP_01013185.1| RNA modification enzyme, MiaB-family protein [Maritimibacter alkaliphilus HTCC2654] gi|84666444|gb|EAQ12916.1| RNA modification enzyme, MiaB-family protein [Rhodobacterales bacterium HTCC2654] Length = 455 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 125/450 (27%), Positives = 204/450 (45%), Gaps = 38/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G N Sbjct: 32 SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIGEALN- 90 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ A+ E I P V V GP Y ++ + + +A + Sbjct: 91 RNGR--------VLVTGCLG-ADPEYITGAHPSVLAVTGPHQYEQVLDAVHKAVPPQ--- 138 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L G R + +L I EGC+ C FC++P RG SR + Sbjct: 139 ------PDPFVDLLPATGVTLTPRHYS-YLKISEGCNHACKFCIIPDMRGKLQSRPAHAI 191 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVRL 263 V EA KL++ GV E+ ++ Q+ +A+ GLD G + +DL L + VRL Sbjct: 192 VREAEKLVEAGVKELLVISQDTSAY---GLDLKYAEERGHRAHITDLARDLGSLGAWVRL 248 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y +P + A G +++PYL +P Q +LK M R A I R Sbjct: 249 HYVYPYPHVRELIPLMAEG---LILPYLDIPFQHADTGVLKRMARPAAAARTLDEIAAWR 305 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + PDI++ S FIVG+PGET+D+F+ +D +D+ + F+Y G + + + V Sbjct: 306 EICPDISLRSTFIVGYPGETEDEFQVLLDWMDEAQLDRVGCFQYENVDGARSNALPDHVP 365 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVLN 441 + VK ER +K + + A VG+ IEV++++ ++ + +P + + Sbjct: 366 DEVKEERWHRFMEKAQAISEAKLAAKVGKTIEVIVDEVEEDAATCRTKADAPEIDGCLFI 425 Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELV 468 + H G I+ V + + L+G L Sbjct: 426 DEGHEDLKPGQIVSVVVDEAGEYDLWGRLA 455 >gi|302772983|ref|XP_002969909.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii] gi|300162420|gb|EFJ29033.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii] Length = 421 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 121/416 (29%), Positives = 195/416 (46%), Gaps = 40/416 (9%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F+K++GC N DS M + GY+ D+ADL ++NTC ++ + + + Sbjct: 2 IFLKTFGCAHNQSDSEYMAGQLLAYGYKISEDPDEADLWLINTCTVKAPSQSAMETL--- 58 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 IR K I +V+AGCV Q G + L+ V+VV G Q R+ E++E G Sbjct: 59 IRKGKAQTIP------LVIAGCVPQ--GSKDLKDLEGVSVV-GVQQIQRVVEVVEETLKG 109 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 V S L +D RK + I GC CT+C + RG S Sbjct: 110 HEVKLLRRST------LPSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSYK 163 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-------- 258 + +V + ++ GV EI L ++ A+ G+ + + T L ++E+ Sbjct: 164 IEALVKRLQGVVSEGVTEIWLSSEDTGAY-GRDIGSDIPTLLRAL--VAELPRDRSVMLR 220 Query: 259 -GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 G+ Y H +++++ L + +LH+PVQSGSD +L++M R +T E++Q Sbjct: 221 IGMTNPPYILQHLKEIAEILRHP-----CVYSFLHVPVQSGSDSVLEAMKREYTVAEFKQ 275 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + D + + PDI I++D I GFPGET D+F TM+L++ + Q ++ PR GTP + Sbjct: 276 VADTLIELVPDIHIATDIICGFPGETSDEFDKTMELIEHYKFPQVHISQFYPRPGTPAAR 335 Query: 378 MLEQVDENVKA-ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 M VK RLL L E ++D G++ V + + LVG + Sbjct: 336 MKRVPTAEVKKRSRLLT---SLFESFTPYSDM-EGKVYRVWVTDTAADGIHLVGHT 387 >gi|170579583|ref|XP_001894893.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein [Brugia malayi] gi|158598345|gb|EDP36257.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein [Brugia malayi] Length = 447 Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 117/419 (27%), Positives = 205/419 (48%), Gaps = 28/419 (6%) Query: 44 MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103 M + + G++ N +DA L +LN+C ++ + ++ + + R L + Sbjct: 1 MAGLLSAAGHQLTNKKEDASLWILNSCTVKTPSETQLENMVREARKLNK---------FI 51 Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163 +VAGCV+QAE LR +++V G + + + +E G V ++ L Sbjct: 52 IVAGCVSQAEPN--LRFLDGISIV-GVKQIECVTQAVEETLKGNCVRFLSRRKQNSNLLL 108 Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223 + RK L I GC CT+C RG +S L +++ AR +G Sbjct: 109 PKI-----RKNKFVEILAISSGCLNHCTYCKTKSARGNLVSYPLDSLLERARNAFADGCK 163 Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--KGLVRLRYTTSHPRDMSDCLIKAH 281 E+ L +++ AW G+ +D DLL +L EI +G + LR ++P + D L + Sbjct: 164 ELWLTSEDLGAW-GRDID---MVLPDLLNALVEIIPEGCM-LRLGMTNPPYILDFLEEIS 218 Query: 282 GDLDV--LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339 L+ + +LH+PVQS SD +L M R +T ++ +++D + P+I I++DFI + Sbjct: 219 EILNHPRVYSFLHIPVQSASDAVLSDMKREYTCTDFCRVVDYMIQNVPNIYIATDFICAY 278 Query: 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399 P ET+ DF +M LV K + F ++ PR+GTP +N L+++D ++A R L Sbjct: 279 PTETESDFEESMALVRKYRFPSLFINQFYPRIGTPAAN-LKKID-TIEARRRTAEMSSLF 336 Query: 400 EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDV 458 +N +G+ VL+ + ++ VG + + ++ SK +G ++VRITDV Sbjct: 337 RSYSRYNKERIGEKHRVLVCELATDQQHYVGHNKHYEHFLIPSKKCLLGKWVQVRITDV 395 >gi|78188544|ref|YP_378882.1| hypothetical protein Cag_0566 [Chlorobium chlorochromatii CaD3] gi|78170743|gb|ABB27839.1| Protein of unknown function UPF0004 [Chlorobium chlorochromatii CaD3] Length = 470 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 111/414 (26%), Positives = 202/414 (48%), Gaps = 37/414 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVY 81 + QR + GC++N +S + + +G+E V+ D DLI++++C + +A +K Sbjct: 5 IKQRVAALTLGCKLNYAESSALLSALWQKGWEVVSLHDGKVDLIIIHSCAVTAQAEQKGR 64 Query: 82 SFLGRI-RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 + + RN SRI +V GC AQ ++ V+ V+G + EL Sbjct: 65 QKIRALHRNYPTSRI--------MVIGCAAQLH-PDVFAAIEGVDGVLGSNDKF---ELS 112 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYN------RKRGVTAFLTIQEGCDKFCTFCV 194 R + + E + G++ ++ AFL IQ+GC+ C +CV Sbjct: 113 HYERVMAKKCNKPLVCITPMEHCKTIHHGFSLPATLAKQERTRAFLKIQDGCNAGCAYCV 172 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 +P+ RG S +Q+V++A +L +G EI L G N+ + G+D LL +L Sbjct: 173 IPHLRGASRSLPANQLVEQAHRLAASGYREIVLTGVNIGDYWADGVD-----LCGLLRAL 227 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 +E+ + RLR +++ +SD LI+ ++P+LH+P+Q GSD +L++M RR+T Sbjct: 228 AEVP-VSRLRLSSTELEALSDELIELVAASPTIVPHLHVPLQGGSDSLLRAMRRRYTTAM 286 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 YR I+R + AI D +VG+P ET++ F +M ++ + + F S R P Sbjct: 287 YRARIERAVERIANCAIGVDIMVGYPSETEEMFHESMAFIEALPLSYLHVFSCSLR---P 343 Query: 375 GSNMLEQVDE--------NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + + ++V ++ AER + +++ +F +G ++ VL+E+ Sbjct: 344 HTLLADEVARQERKALSGDIVAERSRQMVALGHQKEAAFKQRFLGAVMPVLLEQ 397 >gi|15790759|ref|NP_280583.1| hypothetical protein VNG1861C [Halobacterium sp. NRC-1] gi|169236502|ref|YP_001689702.1| hypothetical protein OE3617F [Halobacterium salinarum R1] gi|10581306|gb|AAG20063.1| conserved hypothetical protein [Halobacterium sp. NRC-1] gi|167727568|emb|CAP14356.1| conserved hypothetical protein [Halobacterium salinarum R1] Length = 432 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 122/449 (27%), Positives = 205/449 (45%), Gaps = 40/449 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ +++YGC N +S +E G+ +V + DAD+ +LNTC + EK + L Sbjct: 3 RYHIETYGCTSNRGESRDIERRLRDAGHHKVETAADADVAILNTCTVVEKTER---NMLR 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R + L + E DL+V GC+A A+GE V+ + +PE + Sbjct: 60 RAKELAD----ETADLIVT--GCMALAQGEAFADADVDAQVL----HWDDVPEAVTNGEC 109 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 D + I+D GV L I GC C++C+ G S Sbjct: 110 PTTTPDAE----------PILD-------GVVGILPIARGCMSNCSYCITKQATGRVDSP 152 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLR 264 + + V++AR L+ G EI + GQ+ + G D + +LL + +EI+G R+R Sbjct: 153 PVEENVEKARALVHAGAKEIRITGQDTGVY---GWDTGERKLPELLERIATEIEGEFRVR 209 Query: 265 YTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 ++P + + L + D + +LH PVQSGSD +L M R+H +YR I++ Sbjct: 210 VGMANPGGVHGIREELAAVFAEHDEIYNFLHAPVQSGSDDVLADMRRQHEVSQYRDIVET 269 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 + +S+DFIVGFP E DDD A+MDL+ + + ++S R GT + L+ Sbjct: 270 FNDTLGEWTLSTDFIVGFPTEDDDDHEASMDLLRETRPEKINVTRFSKRPGTDAAE-LKG 328 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + K +R + + + +++ VG +VL+ + G + Q +V N Sbjct: 329 LGGQTKKDRSKAMTELKMDVVGEAHESMVGTRRDVLVVEEGTGDSVKCYDGAYRQVIVQN 388 Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468 + +H + GD V +T + + E V Sbjct: 389 ATDHGLEPGDFATVEVTSHQTVYAFAEPV 417 >gi|85372941|ref|YP_457003.1| ribosomal protein S12 methylthiotransferase [Erythrobacter litoralis HTCC2594] gi|123409738|sp|Q2NDN5|RIMO_ERYLH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|84786024|gb|ABC62206.1| hypothetical protein ELI_00570 [Erythrobacter litoralis HTCC2594] Length = 462 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 126/487 (25%), Positives = 221/487 (45%), Gaps = 61/487 (12%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 + S I DQ ++ + S GC + DS R+ + GY AD++++NTC Sbjct: 4 ITSAIPDQ----KKVGMVSLGCPKALVDSERILTRLRADGYAMSADYAGADVVLVNTCGF 59 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 + A E+ + +G I E G V+V GC+ + E + I P V V G Sbjct: 60 LDSAKEESLAAIGEA-------IAENGR--VIVTGCMGE-EADAIRAAHPQVLAVTGAHQ 109 Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 Y + + + D + + + Y+ +L I EGC+ C F Sbjct: 110 YEAVVGAVHEHAPPSQGPYVDLIPQPSEADIKLTPRHYS-------YLKISEGCNHSCAF 162 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLD 241 C++P RG SR + V+ EA KL+ G E+ ++ Q+ +A W+G+ + Sbjct: 163 CIIPQLRGKLASRRIDAVLREAEKLVAAGTKELLVISQDTSAYGVDTRHEAKSWKGREV- 221 Query: 242 GEKCTFSDLLYSLSEI------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295 + +DL L ++ VRL Y +P + + A G +L PYL +P Sbjct: 222 --RAHMTDLARELGQLDTGDGTPPWVRLHYVYPYPHVDAVIPLMAEG---LLTPYLDIPF 276 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355 Q S ++LK+M R + + + R++ P+IA+ S F+VGFPGET+DDFR ++ ++ Sbjct: 277 QHASPKVLKAMKRPANEAKVLERLKGWRAICPEIAVRSSFVVGFPGETEDDFRYLLEWLE 336 Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQ 412 + + +F++ P G + + + V E VK E R++ L ++ +++ +G+ Sbjct: 337 EARLDRVGAFRFEPVEGAAANALPDPVPEEVKEERYARIMELTARISAEKLQRK---IGR 393 Query: 413 IIEVLIEKHGK--EKGKL--VGRS----PWLQSVVL---NSKNHNIGDIIKVRITDVKIS 461 + V+I++ G+ E G + GRS P + V GDI++V + D Sbjct: 394 ALPVIIDEVGEPDEDGDIGATGRSQADAPEIDGAVYLRNVPATLAAGDIVQVTVEDADEH 453 Query: 462 TLYGELV 468 L+G + Sbjct: 454 DLFGAIA 460 >gi|332827121|gb|EGJ99906.1| ribosomal protein S12 methylthiotransferase rimO [Dysgonomonas gadei ATCC BAA-286] Length = 431 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 125/460 (27%), Positives = 216/460 (46%), Gaps = 50/460 (10%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSF 83 R V + GC N+ DS + + GY + D + +++V+NTC A E+ + Sbjct: 5 RIDVITLGCSKNLVDSELLMKQLLANGYTVKHDPDKSEGEIVVINTCGFIGDAKEESINM 64 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + K R + V GC+ EE+ P V+ G Sbjct: 65 ILEFAEAKKERKLNK----LFVMGCLTDRYMEELKAEIPEVDSFYG-------------- 106 Query: 144 RFGKRVVDTD----YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 +FG + + +D Y E ER Y A+L I EGC++ C++C +P Sbjct: 107 KFGWKALISDLGKSYHKELALERNITTPSHY-------AYLKISEGCNRACSYCSIPIMT 159 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIK 258 G SR + +V +E R L+ +GV E ++ Q+++ + GLD K +L+ +++I+ Sbjct: 160 GKHQSRQIEEVEEEVRHLVASGVKEFQVIAQDLSYY---GLDNYKQAKLPELIDRIAKIE 216 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ +R ++P + L+ + + + YL + +Q SD +LK M R T + + Sbjct: 217 GVEWIRLHYAYPANFPYDLLPVMRNNENVCKYLDIALQHISDNMLKKMRRNITKEQTYNL 276 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SN 377 I RIR P I I + +VG PGE+ DF + V + + + +F YS GT ++ Sbjct: 277 IKRIREEVPGIHIRTTLMVGHPGESHKDFEELLQFVKDVRFDRMGAFPYSHEDGTYAYAH 336 Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--- 431 +++ + VK ER L+ LQ+++ + N+ +G ++V++++ +E +GR Sbjct: 337 YRDEISDAVKQERMDVLMALQERI---ALDINEQKIGNTLKVIVDR--EESDYYIGRTEY 391 Query: 432 -SPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468 SP + VL KN NIGD VRIT + LYGE++ Sbjct: 392 DSPEVDPEVLIKKNKMLNIGDFYNVRITGAQPFDLYGEVI 431 >gi|115950365|ref|XP_001188890.1| PREDICTED: similar to CDK5 regulatory subunit associated protein 1-like 1 [Strongylocentrotus purpuratus] Length = 660 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 129/470 (27%), Positives = 211/470 (44%), Gaps = 59/470 (12%) Query: 22 IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 I+P Q+ FVK++GC N D M S GY + AD+ +LN+C ++ A + Sbjct: 56 IIPGTQKVFVKTWGCSHNNSDGEYMAGQLASYGYSITDDSSGADVWLLNSCTVKNPAED- 114 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 RN ++G L V+AGCV Q + + + V+G Q R+ E+ Sbjct: 115 ------HFRNEIQKAQQQGKAL--VLAGCVPQGQPKAKYMQG---VSVIGVQQIDRVVEV 163 Query: 140 LERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 +E G V + K + +D R+ + L I GC CT+C + Sbjct: 164 VEETVKGNTVRLFGQKKQGGKKIGGASLDLPKIRRNPLVEILAINTGCLNQCTYCKTKHA 223 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD----------------G 242 RG S ++V A++ D GVCEI L ++ A+ G+D Sbjct: 224 RGELGSYPPEELVARAKQSFDEGVCEIWLTSEDTGAY---GIDIGVTIVELLDQLVEVIP 280 Query: 243 EKCTF----SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 E C ++ Y L ++G+ R+ HPR S +LH+P+QSG Sbjct: 281 EGCMMRIGMTNPPYILDHLEGIARI---LRHPRVYS---------------FLHIPIQSG 322 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 SD +L M R + ++R+I++ +R P + I++D I GFP E++ DF T+ L+++ Sbjct: 323 SDSVLMDMKREYCTADFRKIVEFLRKEVPRVTIATDIICGFPHESEKDFEETLSLIEEFK 382 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F +Y PR GTP + QV K R L + Q +++D VG+ +VL+ Sbjct: 383 FPSVFINQYFPRPGTPAAKW-PQVPAQEKKRRTKALTVLFKSYQ-TYDDK-VGERFDVLV 439 Query: 419 EKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +K LV + + V++ +G I+KV I V L G ++ Sbjct: 440 TEVSHDKQYLVAHNKFYDQVLVPHNKEYLGRILKVEIESVGKHFLMGRVL 489 >gi|332702710|ref|ZP_08422798.1| Ribosomal protein S12 methylthiotransferase rimO [Desulfovibrio africanus str. Walvis Bay] gi|332552859|gb|EGJ49903.1| Ribosomal protein S12 methylthiotransferase rimO [Desulfovibrio africanus str. Walvis Bay] Length = 438 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 121/426 (28%), Positives = 189/426 (44%), Gaps = 42/426 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84 + + S GC DS R+ V+ +DA LI +NTC IR E + + L Sbjct: 5 KIYSVSLGCPKTRVDSERLLGALGK--VCPVDKPEDAQLIFINTCGFIRPAVEESLQAVL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + + L+ VAGC+ E+ P V++ + P + Sbjct: 63 DAASAAGETDARN--RPLLAVAGCLVSRYAGELSPEMPEVDLWLPLDAMDHWPSM----- 115 Query: 145 FGKRVVDTDYSVEDKFERLSIVDG----GYNRKRGVT---AFLTIQEGCDKFCTFCVVPY 197 V + +R + G + + G A+L + EGC C+FC +P Sbjct: 116 -----------VSEALQRRGLAQGPELAAWPARFGGPVSYAYLKVSEGCSHACSFCTIPS 164 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--RGKGLDGEKCTFSDLLYSLS 255 RG S +++ EAR L+D GV E+ L+ Q++ A+ +G DG LL L Sbjct: 165 IRGKLRSEPADRLLVEARMLLDRGVSELVLVAQDLTAYGREAEGSDG----LIRLLEQLL 220 Query: 256 EIKGLVRLRYTTSHPRDMSDCLI---KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 + GL RLR +P ++D L+ + G L+PY +P+Q IL M R Sbjct: 221 PLSGLARLRLMYLYPAGLTDELLSFLRTAGA--PLLPYFDIPLQHAHPEILSRMGRPFAR 278 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 +R ++DR+R P+ AI + I GFPGET + F+ +D V K F Y P G Sbjct: 279 DPWR-VLDRVRERFPEAAIRTSLIAGFPGETQEHFQTLLDFVRKARLTHLGVFPYWPEEG 337 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGR 431 T + M QVDE++K ER+ L + E VGQ ++VL+++ + G +GR Sbjct: 338 TAAAGMEGQVDEDIKQERVRLLMEAQEEISEELMAGYVGQELDVLVDEPSPDWPGLHIGR 397 Query: 432 SPWLQS 437 + W Q+ Sbjct: 398 A-WFQA 402 >gi|328947215|ref|YP_004364552.1| RNA modification enzyme, MiaB family [Treponema succinifaciens DSM 2489] gi|328447539|gb|AEB13255.1| RNA modification enzyme, MiaB family [Treponema succinifaciens DSM 2489] Length = 484 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 122/469 (26%), Positives = 210/469 (44%), Gaps = 84/469 (17%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKV 80 + ++FF+ +GC N D + G+E+V + ADLI++N+C E A E + Sbjct: 1 MTSKKFFLDQHGCAKNQVDGELIMSRLLRLGFEQVFEPEKADLIIVNSCGFIESAKKESL 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 S +G N++I ++AGC+A+ + + P + +VG EL+ Sbjct: 61 DSLIGARSAFPNAKI--------LLAGCLAERYADVFKKDLPEADGIVGNGNL----ELI 108 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGV-------------TAFLTIQEGCD 187 D +V+D FE V ++GV +AF+ I EGCD Sbjct: 109 ------------DSAVKDLFEEKRPVLKA--EQKGVCCGERNSLLSFKGSAFVKITEGCD 154 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGE 243 C+FC +P RG SR+ ++V E + L+ G+ E+ L+GQ++ A+ K E Sbjct: 155 NKCSFCAIPIIRGKLRSRNSDEIVSEIKSLLARGIFEVNLIGQDLAAYGCGEEDKEFSSE 214 Query: 244 KCTFSDLLY---------------------------SLSEIKGLVRLRYTTSHPRDMSDC 276 K + +++Y +S ++G +R HP + Sbjct: 215 K-NWHEIIYKNLKNPVYAEENFYEKNGDSPLCRLIKKISALEGKFWIRLLYIHPDHFNKD 273 Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336 +++ + +PY +P QSG ++I+++MNR+ + Y +I IRS P+ I + F+ Sbjct: 274 ILEVMKNDSRFLPYFDIPFQSGDEKIIRAMNRKGSFENYTSLIKTIRSYFPESCIRTTFL 333 Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD---ENVKAERLLC 393 GFPGETD++ T + + I + F YS T M QV +A RL Sbjct: 334 TGFPGETDENASRTEEFLKSIKSDWSGCFPYSREEDTAAYKMKSQVSLKKAKTRAFRLEE 393 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIE-----KHGKEKGKLVGRSPWLQS 437 +Q ++ + + G+I +VLIE K G ++G +GR+ W + Sbjct: 394 MQHEITSESLKMR---CGKIYDVLIEEIIENKDGTDEGLAIGRA-WFDA 438 >gi|288817621|ref|YP_003431968.1| putative 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6] gi|288787020|dbj|BAI68767.1| putative 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6] gi|308751219|gb|ADO44702.1| MiaB-like tRNA modifying enzyme YliG [Hydrogenobacter thermophilus TK-6] Length = 419 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 117/442 (26%), Positives = 211/442 (47%), Gaps = 49/442 (11%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE----KAAEKVYSFL 84 V S GC N+ D+ + + G V+ AD+IV+NTC E +A E + F Sbjct: 5 VISLGCAKNLVDTEVLLGKLKAGGATIVSDPRRADVIVINTCGFIEPAKMEAIETILEFA 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-RA 143 G + V+V GC+ Q EE+ + P V+ G +++ + E L R+ Sbjct: 65 GSKK--------------VIVMGCLVQRYKEELKKEIPEVSAYFGTESWDSIVEFLNLRS 110 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 KR++ T S A+L + EGC++ C+FC +P RG Sbjct: 111 NESKRIITTPSSY---------------------AYLKVSEGCNRLCSFCAIPLIRGRHR 149 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +VV+EA+ L D G+ E+ ++ Q+ + GK L K +LL +L +++G+ + Sbjct: 150 SRPIEEVVEEAKYLADQGIKELCIVSQD-TTYYGKDLYA-KPYLVELLKALEKVEGIKWI 207 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R +P ++ + L+ + ++PY +P+Q S +LKSM R + R+ ++++R Sbjct: 208 RLLYLYPTEIDENLLSYMAQSEKVLPYFDVPLQHVSTEVLKSMRRGYDEAFVREFVEKVR 267 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + + + FIVG+P E + D++ +D V + + +F Y GT + + + Sbjct: 268 KNIANAVLRTTFIVGYPLERERDYQKLLDFVREGHFHWVGAFTYYQEEGTHAYALGDPIP 327 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSV 438 + K ER L + R+ N + VG+ E+L++ +E G++ ++P + + Sbjct: 328 QREKEERKEELLRVQRDITYQKNLSLVGKSFELLVDGFDEEFGFVPVGRIYAQAPEVDGI 387 Query: 439 --VLNSKNHNIGDIIKVRITDV 458 V + K GD++KV IT V Sbjct: 388 TYVESDKELKAGDVVKVMITQV 409 >gi|125807910|ref|XP_001360562.1| GA19679 [Drosophila pseudoobscura pseudoobscura] gi|121988829|sp|Q291H5|CDKAL_DROPS RecName: Full=CDKAL1-like protein gi|54635734|gb|EAL25137.1| GA19679 [Drosophila pseudoobscura pseudoobscura] Length = 553 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 131/463 (28%), Positives = 225/463 (48%), Gaps = 42/463 (9%) Query: 20 QCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA 77 + ++P Q+ FVK++GC N DS M + GY +++ D+ADL +LN+C ++ + Sbjct: 65 ESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGY-KLSGKDEADLWLLNSCTVKNPSE 123 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRL 136 + RN S + G +VVAGCV Q A + LR V+G Q R+ Sbjct: 124 DT-------FRNEIESGMSNGKH--IVVAGCVPQGAPKSDYLRGL----SVIGVQQIDRV 170 Query: 137 PELLERARFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 E++E G V + + V + + + RK + ++I GC CT+C Sbjct: 171 VEVVEETLKGHSVRLLQNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKT 230 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 + RG S ++VD AR+ G CEI L ++ A+ G+ + + +LL+ L Sbjct: 231 KHARGDLASYPPEEIVDRARQSFAEGCCEIWLTSEDTGAY-GRDIGS---SLPELLWKLV 286 Query: 256 EI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 E+ G+ Y H +++ L + +LH+PVQSGSD +L M Sbjct: 287 EVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYAFLHVPVQSGSDSVLGEMK 341 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + ++ ++D +R P + I++D I GFP ET++DF TM L + + F ++ Sbjct: 342 REYCRKDFEHVVDFLRERVPGVTIATDIICGFPTETEEDFEETMTLCGRYRFPSLFINQF 401 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGKEK 425 PR GTP + M E++ N+ +R K+L + S+ VG++ VL+ + +K Sbjct: 402 FPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAQRVGEMYTVLVTEISHDK 456 Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VG + + V+L +++ +G + VRIT V ++ GE++ Sbjct: 457 LHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSVSKFSMVGEIL 499 >gi|294012737|ref|YP_003546197.1| MiaB-like enzyme [Sphingobium japonicum UT26S] gi|292676067|dbj|BAI97585.1| MiaB-like enzyme [Sphingobium japonicum UT26S] Length = 442 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 120/414 (28%), Positives = 190/414 (45%), Gaps = 42/414 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N+ +S + +M + DLIV+N+C + +A + + R R Sbjct: 8 TLGCRLNIAESEAIREMAGGRD----------DLIVVNSCAVTAEAVRQTRQAIRRARRD 57 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144 + ++V GC AQ E E + V+ V+G Y L Sbjct: 58 RPD-------ARIMVTGCAAQTEPETFAAMAE-VDAVIGNREKMDASHYTSSQRRLGSQA 109 Query: 145 FGKRV---VDTDYSVEDKF---ERLSIVDGGYNRKRG----------VTAFLTIQEGCDK 188 G V + + D+ ER+ + D R+ AFL +Q GCD Sbjct: 110 IGHGVGPGIPAFAGMTDEMGTAERVKVSDIMSVRETAPHMASAFAEHARAFLEVQNGCDH 169 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248 CTFC++PY RG S V+D+AR+L+D G EI L G +V ++ G L G Sbjct: 170 RCTFCIIPYGRGNSRSVPAGAVIDKARELVDAGYREIVLTGVDVTSY-GPDLPGAPSLGL 228 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 + L + L RLR ++ ++ + L +MP+LHL +Q+G D ILK M R Sbjct: 229 LIERLLKGVPDLPRLRLSSLDSVEIDERLFDLIAHEPRMMPHLHLSLQAGDDMILKRMKR 288 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 RH + +I++R+++ RP I+I +D I GFP E + F ++ LV++ F YS Sbjct: 289 RHGRADAVRIVERLKAARPGISIGADIIAGFPTEDEAMFENSLRLVEECAIVHGHIFPYS 348 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 PR GTP + M QVD R L+ Q+ + + +G VL+E++G Sbjct: 349 PRAGTPAARM-PQVDRAAVKARAARLRSACEAQREGWLRSLIGSTQSVLVERNG 401 >gi|195953930|ref|YP_002122220.1| MiaB-like tRNA modifying enzyme [Hydrogenobaculum sp. Y04AAS1] gi|195933542|gb|ACG58242.1| MiaB-like tRNA modifying enzyme [Hydrogenobaculum sp. Y04AAS1] Length = 411 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 122/442 (27%), Positives = 198/442 (44%), Gaps = 44/442 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F V + GC+MN +D + GYE+ + D+ ++NTC + +A + Sbjct: 2 KFKVINLGCRMNQFDGDFISSWLLKHGYEK---SEIPDIYIINTCSVTSQADRSSRQAIY 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + + KE + +V+ GC AQ + +E L + V++V+G + E + Sbjct: 59 QAK-------KENPNAIVIATGCYAQTQ-KEALEKIKEVDIVLGNANRTDILEAI----- 105 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRK----------RGVTAFLTIQEGCDKFCTFCVV 195 K +DT ++LS VD + + FL IQEGC+ FC+FC++ Sbjct: 106 -KNHLDTK-------QKLSHVDNIFRQNDIAFQEDIIFENHRPFLKIQEGCNSFCSFCII 157 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSL 254 P+ RG S ++ + L + G E+ L G ++ + + KG + LL L Sbjct: 158 PFARGKSRSVDEELIIKSVQNLYEKGYKEVVLTGTQLSQYGQDKG-----TSLYKLLKKL 212 Query: 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 +I +RL + L+ + +MP+ HL +QS SD++LK+M R +T E Sbjct: 213 LKIPMFIRLSSMNVNEIKTDKELLDLITEEPNIMPHFHLSLQSASDKLLKAMRREYTLKE 272 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 Y +++ I RP AI +D IVGFP E +DF T + +A F YS R T Sbjct: 273 YEEVVSYIIKKRPISAIGTDIIVGFPTENHEDFNITYIFLKDFPFAYLHIFTYSDRPLTK 332 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 + +VD N K ER L +E++ F + G+ + + H K L Sbjct: 333 AQKLTPKVDSNTKKERSKLLHNLDQEKREHFRASMKGKTLRAVTISHDK---ALTENYIE 389 Query: 435 LQSVVLN-SKNHNIGDIIKVRI 455 L LN K I DII +R+ Sbjct: 390 LTPKDLNIDKFEKINDIIMIRL 411 >gi|119384742|ref|YP_915798.1| MiaB-like tRNA modifying enzyme YliG [Paracoccus denitrificans PD1222] gi|238066602|sp|A1B3K8|RIMO_PARDP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|119374509|gb|ABL70102.1| SSU ribosomal protein S12P methylthiotransferase [Paracoccus denitrificans PD1222] Length = 463 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 120/399 (30%), Positives = 189/399 (47%), Gaps = 34/399 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY A +++NTC + A + +G Sbjct: 36 SLGCPKALVDSERILTRLRAEGYAISPDYKGAGAVIVNTCGFLDSAKAESLQAIGEA--- 92 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + E G V+V GC+ AE E I P V V GPQ Y ++ + + A Sbjct: 93 ----LAENGK--VIVTGCLG-AEPEYITGAHPSVLAVTGPQQYEQVLDAVHHAV------ 139 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L G R + +L I EGC+ C FC++P RG +SR V Sbjct: 140 ---PPSPDPFVDLLPASGVKLTPRHYS-YLKISEGCNHACKFCIIPDMRGKLVSRPAHAV 195 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVRL 263 + EA KL++ GV E+ ++ Q+ +A+ GLD G + +DL L ++ VRL Sbjct: 196 IREAEKLVEAGVRELLVISQDTSAY---GLDRKFATERGHRAHITDLARDLGQLGAWVRL 252 Query: 264 RYTTSHP--RDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 Y +P RD+ L+ AHG+ +++PYL +P Q +LK M R A I Sbjct: 253 HYVYPYPHVRDLIP-LMAAHGESGGLVLPYLDIPFQHAHPDVLKRMARPAAAARTLDEIA 311 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+V PDI + S FIVG+PGET+ +F+ +D +D+ + F+Y G +++ + Sbjct: 312 AWRAVCPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVKGARANDLPD 371 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 V ++VK +R +K + + A VG IEV+++ Sbjct: 372 HVPDDVKQDRWDRFMQKAQAISEAKLAAKVGHRIEVIVD 410 >gi|188582088|ref|YP_001925533.1| MiaB-like tRNA modifying enzyme [Methylobacterium populi BJ001] gi|179345586|gb|ACB80998.1| MiaB-like tRNA modifying enzyme [Methylobacterium populi BJ001] Length = 410 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 105/349 (30%), Positives = 171/349 (48%), Gaps = 26/349 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N +S +G+ + + DL+V+NTC + +A + + R+ Sbjct: 7 TFGCRLNTVES------EVVRGHAEAGA-EGRDLVVVNTCAVTAEAGRQARKAIRRL--- 56 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +R + G + +VV GC A+ E P V +VG R R G Sbjct: 57 --ARERPGAE--IVVTGCGAEVERAHYAD-MPEVARLVGNAAKLRPGSW----RSGAVPP 107 Query: 151 DTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 D E I+ G+ R AF+ +Q GCD CTFCV+P+ RG S +++ Sbjct: 108 PEDIMAVRTAEPTRILGMSGHTR-----AFVPVQNGCDHRCTFCVIPFGRGHSRSVPVAE 162 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 V + R+++++G E+ L G ++ A+ G+ L + + LSE+ L RLR ++ Sbjct: 163 AVAQVRRIVEHGGREVVLTGVDLTAY-GRDLASDLSLGRLVRTILSEVPDLARLRLSSID 221 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 + LI A + LMP++HL +Q+G D ILK M RRH + ++ +R +RP + Sbjct: 222 SVEADPELIAAFAEESRLMPHVHLSLQAGDDLILKRMKRRHARADAIRLCRTLRDLRPGL 281 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +D I GFP ET+ F ++DLV++ F YSPR GTP + M Sbjct: 282 VFGADLIAGFPTETEAQFARSLDLVEECELTHLHVFPYSPRPGTPAARM 330 >gi|91974995|ref|YP_567654.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisB5] gi|91681451|gb|ABE37753.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisB5] Length = 443 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 128/416 (30%), Positives = 187/416 (44%), Gaps = 60/416 (14%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + ++GC++N ++S + G D IV+N+C + +A + +IR Sbjct: 5 IVTFGCRLNAFESEVIRREAEGAGLH--------DAIVINSCAVTNEAVAQARQ---QIR 53 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 LK R +VV GC AQ E V+ V+G R E R + Sbjct: 54 KLKRERPGA----RIVVTGCAAQTEPATFAGMDE-VDRVIGNDDKMRS----EAWRAARI 104 Query: 149 VVDTDYS----VEDKFERLSI----------VDG---GYNRKRGVTAFLTIQEGCDKFCT 191 D D + E K I VDG G R F+ +Q GCD CT Sbjct: 105 AFDADTAFGLGAEQKIAVADIMAVREMAPHLVDGYQSGLPR-----VFVQVQNGCDHRCT 159 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 FC++P+ RG S + VVD+ R L + G EI L G ++ ++ G L G + + Sbjct: 160 FCIIPFGRGNSRSVPIGAVVDQVRALTERGHAEIVLTGVDLTSY-GADLPGTPKLGALVK 218 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L + L RLR ++ + L+ A LMP+LHL +Q+G D ILK M RRH Sbjct: 219 KVLRHVPELQRLRISSIDSIEADRDLLDALAGEQRLMPHLHLSLQAGDDLILKRMKRRHL 278 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + + +R +RPDIA+ +D I GFP ET+ FR ++DLVD G F YS R Sbjct: 279 RDDAIAFCEEVRRLRPDIALGADLIAGFPTETEAMFRRSLDLVDDCGLTFLHVFPYSKRP 338 Query: 372 GTPGSNMLEQVDENV--------KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 GTP + M Q+D + +A LQ++L+ + +GQ VLIE Sbjct: 339 GTPAARM-PQLDGRIIRERAARLRAAGEAALQRRLQAE--------IGQTRAVLIE 385 >gi|318061015|ref|ZP_07979736.1| hypothetical protein SSA3_23925 [Streptomyces sp. SA3_actG] Length = 499 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 127/460 (27%), Positives = 196/460 (42%), Gaps = 62/460 (13%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G++ V AD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLEADGWDLVEDASHADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY------ 134 L +LK G VV GC+A+ G+++ P + V+G Y Sbjct: 61 VDALLEANDLKG----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116 Query: 135 ----------------------------------RLPELLERARFGKRVVDTDYSVEDKF 160 LP ++A + V TD + D Sbjct: 117 QTILSGGIHASHTPRDRRKLLPLSPAARQDAPGVALPGHAQQAPEPEDVAPTD--LPDGL 174 Query: 161 ERLSIVDGGYNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218 S R+ G + +++ GCD+ C+FC +P RG ISR S V+ E R L Sbjct: 175 APASGPRAPLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLTETRWLA 234 Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278 + GV E+ L+ +N N GK L G+ LL L+ + G+ R+R + P +M LI Sbjct: 235 EQGVREVMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLI 292 Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338 + PY L Q + +L++M R + ++D+IR+ P+ + S+FIVG Sbjct: 293 DVLTSTPKIAPYFDLSFQHSAAGVLRAMRRFGGTDSFLGLLDQIRAKAPEAGVRSNFIVG 352 Query: 339 FPGETDDDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 FPGET++D T +D IG F YS GT + ++DE V AERL Sbjct: 353 FPGETEEDVAELERFLTSARLDAIGV-----FGYSDEEGTEAATYATKLDEEVVAERLAR 407 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 + + E + +G+ +EVL+E E +GR P Sbjct: 408 VSRLAEELTAQRAEERIGETMEVLVESAATEDEPALGRGP 447 >gi|88802666|ref|ZP_01118193.1| putative Fe-S oxidoreductase [Polaribacter irgensii 23-P] gi|88781524|gb|EAR12702.1| putative Fe-S oxidoreductase [Polaribacter irgensii 23-P] Length = 450 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 129/462 (27%), Positives = 230/462 (49%), Gaps = 42/462 (9%) Query: 20 QCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS--MDDADLIVLNTCHIREKAA 77 + I + V + GC N+YDS + + G V+ DD +++V+NTC KA Sbjct: 4 KTIKKNKINVVTLGCSKNIYDSEVLMGQLKANGKNVVHEDPEDDGNIVVINTCGFIGKAK 63 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 E+ + L ++ KE G++ V V+GC+++ ++ + P V+ G + L Sbjct: 64 EESIDTI-----LHYAKRKEAGEIDKVFVSGCLSERYKPDLEKEIPNVDQYFGT---HDL 115 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 P LL +V++ DY E ERL+ Y A+L I EGCD+ C+FC +P Sbjct: 116 PNLL-------KVLEADYKHELIGERLTTTPKHY-------AYLKIAEGCDRPCSFCAIP 161 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLS 255 RG +S + +V EA KL + G+ E+ L+ Q++ + GLD +K ++LL +L+ Sbjct: 162 LMRGKHVSTPIEDIVTEATKLAEKGIKEVMLIAQDLTYY---GLDIYKKRALAELLEALA 218 Query: 256 EIKGL--VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 + G+ +R+ Y T P D+ + + + + YL +P+Q + +LKSM R T Sbjct: 219 RVDGIEWIRMHYAFPTGFPMDVLEVMKREPK----VCNYLDIPLQHINTELLKSMKRGTT 274 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + +I + R+ P +AI + IVG+PGET+ F+ D V+++ + + +F+YS Sbjct: 275 HEKTTALIHKFRTAVPKMAIRTTLIVGYPGETEVMFQELKDWVEEMRFERLGAFEYSHEE 334 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLV 429 T + + V VK +R+ + + + N A +G+ L ++ E G+ Sbjct: 335 NTGAYVLEDDVPAEVKFKRVNEIMELQSQISWELNQAKIGKTFRCLFDRKDGEYFYGRTE 394 Query: 430 GRSPWLQS-VVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468 SP + + V+++++ H IG+ I ++I + LYG V Sbjct: 395 SDSPDVDNDVLVDAREHYVKIGEFIDIKIHEAGDYDLYGTPV 436 >gi|260893774|ref|YP_003239871.1| MiaB-like tRNA modifying enzyme YliG [Ammonifex degensii KC4] gi|260865915|gb|ACX53021.1| MiaB-like tRNA modifying enzyme YliG [Ammonifex degensii KC4] Length = 436 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 129/448 (28%), Positives = 210/448 (46%), Gaps = 31/448 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D+ M + G+ + A +I++NTC E A + + L Sbjct: 7 SLGCPKNRVDTETMLGLLREAGFSPTLDLSSAQVILVNTCAFIEPAQREAV-----VTIL 61 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + ++ K+ G +L+V GC+ + G +L P ++ ++G R+ + A G+R V Sbjct: 62 ELAQQKKKGQVLLVT-GCLVELFGSSLLEEMPEIDGLIGTGALDRVVSAVGEALEGRRPV 120 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y F + G R A+L I EGC C+FC +PY RG SR Sbjct: 121 ---YLAPPGF-----LGNGTPRLLSTPSYYAYLKIAEGCSHRCSFCRIPYLRGPYRSRPP 172 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +++ EA +L + GV E+ L+ Q+ +W G L G L + K + +R Sbjct: 173 EEILREAAELAERGVKELILVAQDTTSW-GIDLYGRPSLALLLRELAALEK-VKWIRILY 230 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +HP ++D L++ D + YL LP+Q S RILK M R + +++ RIR P Sbjct: 231 AHPASITDELLEVMAKEDKICRYLDLPLQHLSPRILKRMGR--PLIDPHRLVQRIRKALP 288 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD---E 384 + + + FIVGFPGE +DF + V ++G+ + F Y GTP +++ EQV + Sbjct: 289 GVVLRTTFIVGFPGEEKEDFALLLRGVRELGFERIGIFPYYREEGTPAASLPEQVPEEEK 348 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGK-EKGKLVGRSPWLQSVVL-- 440 + RL L +KL ++ VG+ I VL+E + GK +G+ G +P + V Sbjct: 349 RRRYRRLAFLARKLSRWRLR---RLVGKEITVLVEGEKGKFYRGRSEGDAPEIDGWVYLR 405 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 K GD + R+T + L E++ Sbjct: 406 TDKPLQPGDFVHARVTKARTYDLEAEVL 433 >gi|150002616|ref|YP_001297360.1| putative Fe-S oxidoreductase [Bacteroides vulgatus ATCC 8482] gi|254881421|ref|ZP_05254131.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294777900|ref|ZP_06743343.1| MiaB-like protein [Bacteroides vulgatus PC510] gi|319642808|ref|ZP_07997446.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_40A] gi|149931040|gb|ABR37738.1| putative Fe-S oxidoreductase [Bacteroides vulgatus ATCC 8482] gi|254834214|gb|EET14523.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294448253|gb|EFG16810.1| MiaB-like protein [Bacteroides vulgatus PC510] gi|317385552|gb|EFV66493.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_40A] Length = 438 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 112/396 (28%), Positives = 194/396 (48%), Gaps = 28/396 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + G + AD+ V+NTC + E A +K + R+ Sbjct: 16 TLGCKLNFSETSTIGKTLKEAGIRTARKGEKADICVINTCSVTEVADKKCRQAIHRL--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---ERARFGK 147 +K+ VVV GC AQ + +++ V+VV+G + L L E+ G+ Sbjct: 73 ----VKQHPGAYVVVTGCYAQLKPDQVANIEG-VDVVLGAEQKGELMNYLGNLEKHPQGE 127 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + + S D R R FL +Q+GCD FC++C +P+ RG + + Sbjct: 128 AITTAAKDIRSFSPSCSRGD----RTR---YFLKVQDGCDYFCSYCTIPFARGRSRNGRI 180 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++V++AR+ G EI + G N+ + GK GE +F DL+ +L ++ G+ R R ++ Sbjct: 181 EEIVEQARQAAAEGGKEIVITGVNIGDF-GK-TTGE--SFFDLVKALDQVAGIERYRISS 236 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P ++D +I+ MP+ H+P+QSGSD +LK M RR+ + I +I+ + P Sbjct: 237 IEPNLLTDEIIEYVSRSRAFMPHFHIPLQSGSDDVLKLMRRRYDTALFASKIRKIKEIMP 296 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDE 384 D I D IVG GET++ F ++ + Q F YS R GT ++ ++ Sbjct: 297 DAFIGVDVIVGTRGETEEYFEDAYRFIEGLDVTQLHVFSYSERPGTQALKIEYVVSPEEK 356 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + +++RLL L + +F + +G+ VL+EK Sbjct: 357 HRRSQRLLALSDA---KTKAFYTSHIGREAWVLMEK 389 >gi|114328163|ref|YP_745320.1| tRNA 2-methylthioadenosine synthase-like protein [Granulibacter bethesdensis CGDNIH1] gi|114316337|gb|ABI62397.1| tRNA 2-methylthioadenosine synthase-like protein [Granulibacter bethesdensis CGDNIH1] Length = 434 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 107/354 (30%), Positives = 168/354 (47%), Gaps = 35/354 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + ++GC++N Y+S M R ++ +D I++NTC + +A + + R Sbjct: 27 ILTFGCRLNSYESEVM----------RGHAAALSDTIIVNTCAVTGEAERQARQAIRRAH 76 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +E + +VV GC AQ + P V V+G + + PE Sbjct: 77 -------RERPEAQIVVTGCAAQLDPAR-WAALPGVTRVLGNEDKLK-PE--------SW 119 Query: 149 VVDTDYSVED----KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 D ++ D K +V R R AF+ +Q+GCD CTFC++P+ RG S Sbjct: 120 APDAPSAISDIMQAKETAAHLVTEFAGRAR---AFVQVQQGCDHRCTFCIIPFGRGPSRS 176 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + +VD+ R L+ G E+ L G ++ ++ G L G + L+ + L RLR Sbjct: 177 VPIGAIVDQVRLLVQRGYQEVVLTGVDITSY-GPDLPGAPGLGQMMRRLLALVPELPRLR 235 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P ++ + L + LMP+LHL +Q+GSD ILK M RRH+ + + R R Sbjct: 236 LSSLDPEEIDEDLWHLIAEEPRLMPHLHLSLQAGSDMILKRMKRRHSRAGALETVARARR 295 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +RP IAI +D I GFP ET+ F T+ V + F YS R GTP + M Sbjct: 296 LRPGIAIGADVIAGFPTETEALFEETLAFVREAQLPFLHVFPYSERPGTPAARM 349 >gi|85714448|ref|ZP_01045436.1| 2-methylthioadenine synthetase [Nitrobacter sp. Nb-311A] gi|85698895|gb|EAQ36764.1| 2-methylthioadenine synthetase [Nitrobacter sp. Nb-311A] Length = 422 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 107/372 (28%), Positives = 178/372 (47%), Gaps = 36/372 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N ++S + + G + +++++N+C + +A + + R+R Sbjct: 5 VVTFGCRLNAFESEVIRRNAEAAGLD--------EIVIINSCAVTNEAVAQTRQSIRRLR 56 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-- 146 +E +VV GC AQ E + + V+ V+G R Sbjct: 57 -------RERPSARIVVTGCAAQIE-PAMFAQMAEVDRVIGNDDKMRGDAWRAARAAFAG 108 Query: 147 --------KRVVDTDYSVEDKFERLSIVDG---GYNRKRGVTAFLTIQEGCDKFCTFCVV 195 K++ TD + +VDG G R AF+ +Q GCD CTFC++ Sbjct: 109 SDVAIPAEKKIAVTDIMAVTEMAP-HLVDGFRGGLPR-----AFVQVQNGCDHRCTFCII 162 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 P+ RG S ++ +VD+ R L++ G E+ L G ++ ++ G L G + L Sbjct: 163 PFGRGNSRSAPMNVIVDQVRALVEAGHVEVVLTGVDLTSY-GADLPGRPRLGGLVKQILQ 221 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + + RLR ++ + L+ A + + LMP+LHL +QSG D ILK M RRH+ E Sbjct: 222 RVPEMTRLRISSIDSIEADRDLLDAVANEERLMPHLHLSLQSGDDIILKRMKRRHSRREA 281 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 + ++R +RPD+A+ +D I GFP ETDD F ++DLV + F YS R GTP Sbjct: 282 IEFCAQVRRLRPDVALGADIIAGFPTETDDMFARSLDLVAECDLTFLHVFPYSLRPGTPA 341 Query: 376 SNMLEQVDENVK 387 + M E ++ Sbjct: 342 ARMPPVAAEVIR 353 >gi|256830728|ref|YP_003159456.1| MiaB-like tRNA modifying protein YliG [Desulfomicrobium baculatum DSM 4028] gi|256579904|gb|ACU91040.1| MiaB-like tRNA modifying enzyme YliG [Desulfomicrobium baculatum DSM 4028] Length = 441 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 125/458 (27%), Positives = 216/458 (47%), Gaps = 45/458 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKA-AEKVYS 82 R S GC N D+ E M G VN+ + DAD++++NTC E A +E + Sbjct: 5 RIHTISLGCPKNQVDT---EWMLGGFGASFVNAAEPEDADVVLINTCGFIEPAVSESLQV 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L + L + +VV GC+ G+++ P V++ + E+ + Sbjct: 62 ILDMAQRLAELSPRPS----LVVTGCLVSRYGQDLRCELPEVDLFL---------EIGRQ 108 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPY 197 G+R+ + ED L GG++ R +T A+L I EGCD C FC +P Sbjct: 109 NELGQRLRELAELREDARPGLEAALGGFSAARLLTTPQSFAYLKIAEGCDNRCRFCTIPS 168 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG +SR + ++D+AR+ + G E+ L+ Q+V A+ G D + LL L+ + Sbjct: 169 IRGPLVSRDEAGILDDARRCLAQGRKELVLIAQDVTAY---GRDRGQKALRGLLEKLAPL 225 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 GL +R +P + L++ DL +PY +P+Q IL SM R + R Sbjct: 226 NGLEWMRLMYLYPAGLDGDLLRFLADLGRPFIPYFDIPLQHAHPDILASMGRPFQ-RDPR 284 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +++++R P+ A+ + FIVG+PGET+ FRA V + + F Y G+ + Sbjct: 285 AVVEQVRKFFPEAALRTTFIVGYPGETEARFRALESFVREARFMHLGVFPYYAEDGSEAA 344 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACV----GQIIEVLIEK-HGKEKGKLVGR 431 + +Q+ + VK ER + ++ E Q + + GQ ++VL+++ H + G GR Sbjct: 345 ILPDQLPDEVKEER----RDRIMEMQADISADLLAGFEGQELDVLVDRAHEEWPGLYEGR 400 Query: 432 SPWLQS------VVLNSKNHNIGDIIKVRITDVKISTL 463 + W Q+ ++ ++ G +++ I +VK L Sbjct: 401 T-WFQAPEVDGITYVSGESVMPGKMVRAVIEEVKTYDL 437 >gi|330506789|ref|YP_004383217.1| hypothetical protein MCON_0563 [Methanosaeta concilii GP-6] gi|328927597|gb|AEB67399.1| conserved hypothetical protein [Methanosaeta concilii GP-6] Length = 437 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 125/456 (27%), Positives = 224/456 (49%), Gaps = 36/456 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF+++++GC N +S + + G+ + + +AD++++NTC + E+ K+ L Sbjct: 2 RFYIETFGCTSNFGNSQDLAEALREMGH-IPSGLKEADMVIVNTCAVTERTERKI---LR 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL------RRSPI----VNVVVGPQTYYR 135 R+R L+ R+ VVAGC+A A + I R P+ + G + Sbjct: 58 RLRQLEGERL--------VVAGCLAAAIPQSIQTLCCRGRLGPLSQGDAARIAGLFDGWL 109 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCV 194 +P + + G+ S E ER V + G + + + +GC+ C++C+ Sbjct: 110 MPS--QHMQSGQLQSQNFQSEEMLRERHIAVHLRESSPGGESCGIVNVADGCNGSCSYCI 167 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 V RG SR + VV +L G EI + Q+ A+ G + + + LL +L Sbjct: 168 VSKARGRLKSRPVEDVVLAVERLAQLGTAEIQISAQDTAAF-GSDIGSD---LAGLLETL 223 Query: 255 SEIKGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +EI G LR +P R + + LI+A + +LH+PVQSGSD IL+ M R +T Sbjct: 224 TEIPGDFMLRVGMMNPDSARLIQNRLIEAFQSPKIYR-FLHIPVQSGSDEILQRMGRVYT 282 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + E+ +++ R PDI+I +D IVGFPGETD DF +M L++++ + ++SPR Sbjct: 283 SDEFFELVSAFRFAYPDISIITDIIVGFPGETDKDFEESMSLIERLQPDKVNITRFSPRP 342 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 GT +++ + D +K +R + + E N +G+++ L+ + G++K + R Sbjct: 343 GTSAASLYDMPD-RIKKDRSREMTRLWLEIAERRNRRYLGKVLHALVTECGRDK-TMKAR 400 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 S +V+ ++G +++I + L G L Sbjct: 401 SANYAGIVIPGA-LDLGRWCQIKIMETTPYYLSGIL 435 >gi|189485173|ref|YP_001956114.1| hypothetical protein TGRD_170 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|238055294|sp|B1GZH1|RIMO_UNCTG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|170287132|dbj|BAG13653.1| conserved hypothetical protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 439 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 114/442 (25%), Positives = 205/442 (46%), Gaps = 26/442 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q V + GC N ++ + +F +G++ +++D AD++V++TC + A + + Sbjct: 7 QTIAVIALGCPKNTVEAEYLLGIFQEKGFKISSNLDKADIVVIHTCSFIKAAKAESEKCI 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I ++K + L V V+GC+ Q E++ P ++ G T LP+L+ Sbjct: 67 RTILDIKKKK-----SLRVYVSGCLPQLLKEKMSVLFPDIDGFAGTGTLQYLPDLVFGKN 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 FG+ ++ + + LS +A+L I EGC C+FC++P RG S Sbjct: 122 FGRFILPPGGLNDSNYRVLS--------STIPSAYLKIAEGCGHVCSFCIIPALRGRYES 173 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R++ +VDE L ++G+ E+ L+ Q+ + GK + G LL LS+I GL +R Sbjct: 174 RTMESLVDEVAALAESGIKELILIAQDTTGY-GKDIYGA-FVLDKLLVKLSKINGLKWIR 231 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++P ++D LI+ + + Y+ +P+Q S +L +M R II++I+ Sbjct: 232 LLYAYPSSITDGLIEVFKEHKKICSYMDIPIQHASKNVLSAMKR---PLNTPGIIEKIKR 288 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PDI + + I GFPGET D ++ +++ + A F+YS S + V Sbjct: 289 KLPDIVLRTSIIAGFPGETKKDVNELINFLNRGYFQYAGVFEYSDLKEAVSSKLKRHVRA 348 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE------KGKLVGRSPWLQSV 438 ER + ++ + D IE L+E K+ KG+ +SP + Sbjct: 349 AAAKERKIMIENAQYNIFQAKIDKIKNNTIEFLVESCLKKGNVYSIKGRSSFQSPEIDGN 408 Query: 439 VL--NSKNHNIGDIIKVRITDV 458 ++ N K +G K ++ V Sbjct: 409 IILENDKPLTVGGFCKAKVRSV 430 >gi|78188689|ref|YP_379027.1| hypothetical protein Cag_0713 [Chlorobium chlorochromatii CaD3] gi|123770879|sp|Q3ASP1|RIMO_CHLCH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|78170888|gb|ABB27984.1| SSU ribosomal protein S12P methylthiotransferase [Chlorobium chlorochromatii CaD3] Length = 438 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 131/454 (28%), Positives = 215/454 (47%), Gaps = 43/454 (9%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLG 85 F+ S GC N DS R+ + V +D+AD I++NTC E A E + L Sbjct: 6 LFLLSLGCSKNTVDSERLLAQAAAAAIRSVERVDEADTILINTCAFIEDAKKESIEEMLA 65 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + + +K+ V V GC+ + E+ P V+ G + LP++L A Sbjct: 66 ALDKKREGVVKQ-----VFVMGCLPELYRRELQEELPEVDAFFGTR---ELPQIL--ASL 115 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G R Y E ERL + Y A+L I EGC++ C+FC +P RG S+ Sbjct: 116 GAR-----YRSELFDERLLLTPSHY-------AYLKISEGCNRICSFCSIPKIRGRYQSQ 163 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-VRLR 264 L Q++ EA +L GV E+ L+ Q+++ + G G ++LL LS++ L +RL Sbjct: 164 PLEQLLREATRLQQQGVQELNLIAQDISLF-GYDTTGHS-QLNELLLRLSDMDFLWIRLL 221 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y ++P + +I D + YL +P+Q +DRIL++M R T + +++ +R Sbjct: 222 Y--AYPVNFPLEVIDTMRDRSNICNYLDIPLQHCNDRILRAMKRGVTKADTIRLLHEMRQ 279 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+I + + +VGFPGET +F +D V++ + + F Y+ P + + + + Sbjct: 280 RNPNIRLRTTMLVGFPGETRAEFEELLDFVEEQRFDRLGCFPYNHEEHAPSAMLEDLLSI 339 Query: 385 NVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 K ER L+ LQ+ + E S N G+ IEV+++ +E RS + V N Sbjct: 340 EEKEERVSELMELQEAVAE---SLNREFEGKEIEVVVDSFVEEMA--FCRSEYDAPEVDN 394 Query: 442 -------SKNHNIGDIIKVRITDVKISTLYGELV 468 ++N G+ + I D LYGE+V Sbjct: 395 ECLLTFGAQNIQAGNFYRALINDSSAHELYGEIV 428 >gi|257439153|ref|ZP_05614908.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium prausnitzii A2-165] gi|257198404|gb|EEU96688.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium prausnitzii A2-165] Length = 409 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 117/415 (28%), Positives = 199/415 (47%), Gaps = 21/415 (5%) Query: 47 MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106 MF G+ V ++AD+ V+N+C + +K +L R + +E + V+ Sbjct: 1 MFRGAGFTIVPEGEEADVFVVNSCTVTNFGDQKSRKWLRRAK-------RENPGAVTVLT 53 Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD-TDYSVEDKFERLSI 165 GC QA EE + V L +L+ +R+V T + + FE L + Sbjct: 54 GCYPQAFPEEAAQFMEADLVCGNGDRKAILDNVLKLLDGHERIVAVTPHQRGELFEELPV 113 Query: 166 VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225 + + AF+ +++GC++ C +CV+P RG SR+ ++ E R+L +G E+ Sbjct: 114 ERFETHTR----AFIKVEDGCNRQCAYCVIPRARGPVRSRAEDSILKELRQLAASGYREV 169 Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285 L ++ ++ GLD +L+ ++++G+ R+R + P ++ I ++ Sbjct: 170 VLSAISLPSY---GLD-TGTNLVELVEKCAQVEGIERIRLGSLDPDMLTPEFITRLAAVE 225 Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV---RPDIAISSDFIVGFPGE 342 L P HL +QSG L+ M R +TA +Y Q++D+IR+ RP ++ ++D I GFPGE Sbjct: 226 KLCPQFHLSLQSGCTSTLRRMRRVYTAEQYAQVVDQIRAAYGERP-VSFTTDCICGFPGE 284 Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402 T DF + + KIG+ + F YS R GTP + QV E K R + E + Sbjct: 285 TQADFEESCAFLKKIGFLKVHVFPYSRRSGTPAYDFPAQVHEREKQARSREMNALAEEVR 344 Query: 403 VSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457 A VG EVL+E E G + VV+++ H G+I+ VR+ + Sbjct: 345 REVLAAHVGTEDEVLLETPLSET-LFTGYTRLYIPVVVSAPGHKSGEIVHVRLGE 398 >gi|189345895|ref|YP_001942424.1| RNA modification enzyme, MiaB family [Chlorobium limicola DSM 245] gi|189340042|gb|ACD89445.1| RNA modification enzyme, MiaB family [Chlorobium limicola DSM 245] Length = 458 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 131/418 (31%), Positives = 210/418 (50%), Gaps = 44/418 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD-DADLIVLNTCHIREKAAEKVYSFLGRIRN 89 + GC++N ++ + D ++G+ +++S+D AD+I+++TC + +A +K R Sbjct: 17 TMGCKLNYSETSAILDRLSAEGW-KLSSLDAGADMIIIHTCSVTSQAEQKC-------RQ 68 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERAR 144 I+ + +VVV GC AQ + +L V V+G YR ELL++ + Sbjct: 69 KIRRIIRRHPESVVVVIGCYAQLQ-PALLAGIKGVAAVLGSSDKFVTATYR--ELLDQKQ 125 Query: 145 -FGKRVVDTDYSVEDKFERLSI-VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 F V S E F S+ VD G R R AFL IQ+GCD C +C +P+ RG Sbjct: 126 TFPLARVSDIGSTETVFPGYSLSVDEGEARTR---AFLKIQDGCDYACAYCTIPHARGRS 182 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGL 260 S ++V AR L +G EI L G N+ +RG GL G LL L ++ + Sbjct: 183 RSLPSEELVARARSLAFSGYREIVLTGVNIGDYRGHASGLVG-------LLRMLEDVS-V 234 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R ++ P + D LI+ + P+ H+P+QSGSD ILK+M RR+T YR+ + Sbjct: 235 DRIRISSLEPDILDDELIETVAASKKITPHFHVPLQSGSDSILKAMRRRYTTESYREKLV 294 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379 R D AI +D I G+PGE+++DF ++ + A F S R GT + L Sbjct: 295 RAVGAISDCAIGADVIAGYPGESEEDFMQMYRFIEGLPIAYLHVFTCSVRPGTVLAAQLA 354 Query: 380 -------EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLV 429 V+ + ++ L+ L K+ E+ ++ +G+ E+L+E +EK G+LV Sbjct: 355 ADERRLPSPVELDRRSRLLIELGKRKTEE---YSGKFIGRECEILVEASLREKSGRLV 409 >gi|188995948|ref|YP_001930200.1| putative Fe-S oxidoreductase [Porphyromonas gingivalis ATCC 33277] gi|188595628|dbj|BAG34603.1| putative Fe-S oxidoreductases [Porphyromonas gingivalis ATCC 33277] Length = 444 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 116/362 (32%), Positives = 178/362 (49%), Gaps = 23/362 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + QG V + AD+ V+NTC + E A +K RN Sbjct: 16 TLGCKLNFAETSTIGKALAEQGVRPVREGEKADICVINTCSVTELADKKC-------RNA 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARFGK 147 KE L++V GC AQ + EEI R V++V+G L +L + F + Sbjct: 69 IRKLHKEHPGALMIVTGCYAQLKPEEIARIDG-VDIVLGADEKLDLVSILSQRPIQGFAE 127 Query: 148 RVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + T + + KF+ D +R R FL +Q+GCD C++C +P RG + S Sbjct: 128 QTILTTPTKDIRKFQPGCSAD---DRTR---HFLKVQDGCDYHCSYCTIPKARGRSRNGS 181 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + +V +A + G EI L G N+ + G+ GE TF DLL +L +++G+ R R Sbjct: 182 IESLVRQAEAVAAEGGKEIVLTGVNIGDF-GRST-GE--TFLDLLRALDQVEGIERYRIG 237 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P +SD LI + P+ H+P+QSGSD +LK M RR+ +R+ ++ IR Sbjct: 238 SIEPNLLSDELIDFCASAHRIAPHFHMPLQSGSDDVLKLMRRRYDTALFRERVEHIRRAL 297 Query: 327 PDIAISSDFIVGFPGETDDDFRATMD-LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P I D IVG GE + F L DKI +++ F YS R GT + +VD Sbjct: 298 PHAFIGIDVIVGTRGEKPEFFEDCYSFLQDKISFSRLHVFSYSERPGTQALQIPYKVDAR 357 Query: 386 VK 387 K Sbjct: 358 EK 359 >gi|34541783|ref|NP_906262.1| MiaB-like tRNA modifying enzyme [Porphyromonas gingivalis W83] gi|34398101|gb|AAQ67161.1| MiaB-like tRNA modifying enzyme [Porphyromonas gingivalis W83] Length = 444 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 116/362 (32%), Positives = 178/362 (49%), Gaps = 23/362 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + QG V + AD+ V+NTC + E A +K RN Sbjct: 16 TLGCKLNFAETSTIGKALAEQGVRPVREGEKADICVINTCSVTELADKKC-------RNA 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER---ARFGK 147 KE L++V GC AQ + EEI R V++V+G L +L + F + Sbjct: 69 IRKLHKEHPGALMIVTGCYAQLKPEEIARIDG-VDIVLGADEKLDLVSILSQRPIQGFAE 127 Query: 148 RVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + T + + KF+ D +R R FL +Q+GCD C++C +P RG + S Sbjct: 128 QTILTTPTKDIRKFQPGCSAD---DRTR---HFLKVQDGCDYHCSYCTIPKARGRSRNGS 181 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + +V +A + G EI L G N+ + G+ GE TF DLL +L +++G+ R R Sbjct: 182 IESLVRQAEAVAAEGGKEIVLTGVNIGDF-GRST-GE--TFLDLLRALDQVEGIERYRIG 237 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P +SD LI + P+ H+P+QSGSD +LK M RR+ +R+ ++ IR Sbjct: 238 SIEPNLLSDELIDFCASAHRIAPHFHMPLQSGSDDVLKLMRRRYDTALFRERVEHIRRAL 297 Query: 327 PDIAISSDFIVGFPGETDDDFRATMD-LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P I D IVG GE + F L DKI +++ F YS R GT + +VD Sbjct: 298 PHAFIGIDVIVGTRGEKPEFFEDCYSFLQDKISFSRLHVFSYSERPGTQALQIPYKVDAR 357 Query: 386 VK 387 K Sbjct: 358 EK 359 >gi|237748960|ref|ZP_04579440.1| fe-s oxidoreductase [Oxalobacter formigenes OXCC13] gi|229380322|gb|EEO30413.1| fe-s oxidoreductase [Oxalobacter formigenes OXCC13] Length = 463 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 127/466 (27%), Positives = 205/466 (43%), Gaps = 54/466 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ ++GYE + DA L+++NTC + A + + Sbjct: 11 SLGCPKALVDSEKILTRLRAEGYETAETYQDAGLVIVNTCGFIDAAEAESLEAIAEA--- 67 Query: 91 KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLER--AR 144 ++E G V+V GC+ +G + +R P V V GP + + + R R Sbjct: 68 ----LEENGK--VIVTGCLGAKKDKDGSDFIRNIHPKVLDVTGPDAVSEVMDAVHRYLPR 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + VD I G A+L I EGC CTFC++P RG +S Sbjct: 122 PHEPFVDL------------IPPQGIKLTPKHYAYLKISEGCSHHCTFCIIPDLRGDLVS 169 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYS 253 + +V+DEA +L +GV E+ ++ Q+ A W G+ + + L Sbjct: 170 YPIGKVLDEAEQLFASGVKELLVISQDTGAYGLDTRFRTGFWGGRPVKTHVTQLTGALGK 229 Query: 254 LS-EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L+ + VRL Y +P D +I + VL PYL +P Q +LK M R + Sbjct: 230 LARKYDAWVRLHYIYPYPH--IDDIIPIMNEGGVL-PYLDVPFQHAHPDVLKRMKRPASG 286 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + + I R R + PDI I S FI GFPGET+++F+ +D + + + F YSP G Sbjct: 287 ERHLEQIQRWRKMCPDITIRSTFITGFPGETEEEFQYLLDFLKEAKIDRLGCFPYSPVEG 346 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEK--HGKEKGKL 428 P + + V V+ ER L + ++ +SF +G+ + VL+++ G G+ Sbjct: 347 APANALPGAVPGEVREERRARLMQ--LQEDISFERLQGKIGKTLRVLVDETIRGGAAGRS 404 Query: 429 VGRSPWLQSVVLNSKNHNI------GDIIKVRITDVKISTLYGELV 468 +P + VV K + G+ + V I D L+G V Sbjct: 405 SADAPEIDGVVYVRKPKGMRRKLLPGEFVNVTIEDADAHDLWGLFV 450 >gi|218194881|gb|EEC77308.1| hypothetical protein OsI_15965 [Oryza sativa Indica Group] Length = 629 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 123/463 (26%), Positives = 215/463 (46%), Gaps = 55/463 (11%) Query: 25 QRFFVKSYGC---QMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 Q +VK++GC Q + DS M + GY + ADL ++NTC ++ + + Sbjct: 58 QTIYVKTFGCSHNQASFSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMT 117 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + + + ++ +VVAGCV Q G L+ ++V+ G Q R+ E++E Sbjct: 118 TLISKCKSANKP---------LVVAGCVPQ--GSRDLKELEGISVI-GVQQIDRVVEVVE 165 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G V + L +D RK L I GC CT+C + RG Sbjct: 166 ETLKGHEVRLLSR------KTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGH 219 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSL-SEIK- 258 S ++ +VD + ++ GV EI L ++ A+ R G + +LL + +E+ Sbjct: 220 LGSYTIESLVDRVKIVVSEGVREIWLSSEDTGAYGRDIGTN-----LPNLLNGIVAELPA 274 Query: 259 --------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 G+ + H ++++ L + +LH+PVQSGSD +L +MNR + Sbjct: 275 DRSTMLRIGMTNPPFILEHLKEIASVLCHP-----CVYSFLHVPVQSGSDAVLTAMNREY 329 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 T E+R+++D + + P + I++D I GFPGETD+DF T++LV + + Q ++ PR Sbjct: 330 TVSEFRRVVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYQFPQVHISQFYPR 389 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLRE-----QQVSFNDACVGQIIEVLIEKHGKEK 425 GTP + M + VK K+ RE + S G++ + I + + Sbjct: 390 PGTPAARMKKVPSVEVK--------KRSRELTSVFESFSPYQGMEGKVERIWITEIATDG 441 Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 LVG + V++ + + +G V+IT V +++GE++ Sbjct: 442 VHLVGHTKGYIQVLVIAPDSMLGTSADVKITSVGRWSVFGEVI 484 >gi|325972021|ref|YP_004248212.1| ribosomal protein S12 methylthiotransferase rimO [Spirochaeta sp. Buddy] gi|324027259|gb|ADY14018.1| Ribosomal protein S12 methylthiotransferase rimO [Spirochaeta sp. Buddy] Length = 449 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 116/425 (27%), Positives = 205/425 (48%), Gaps = 35/425 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSF 83 ++ ++++ GC N D+ + + + + +ADLI++NTC E A E+ + SF Sbjct: 2 KKVYMENLGCSKNQVDAETLIKLLEDDQFTHTTEVAEADLIMVNTCGFIESAREQSIESF 61 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + N + K ++++GC+AQ +E+ + + G + ++ E++ + Sbjct: 62 FSL--HEANPQAK------IILSGCMAQRYAKELQDELGEASAIFGNRDLSKIHEVVRQV 113 Query: 144 RFGKRVV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 G RV+ D V ++ E LS +A+L I EGC+ +C++C +P Sbjct: 114 FAGDRVIELPSYPDLANEVYERNELLSFPG---------SAYLKISEGCNHWCSYCAIPL 164 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG S+ ++ EAR LI+ G+ EI L+ Q++ A+ G D + F DLL +L + Sbjct: 165 IRGGLRSKLKETILIEARTLIERGIKEINLIAQDLAAYGTDGPD-KSSKFMDLLEALVAL 223 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 G +R +P L K + ++PY +P Q ++L+SM R T Y Sbjct: 224 DGDFSIRLLYIYPDAFPPTLAKFIAEHKKVLPYFDIPFQHADQKVLQSMGRTGTKESYLS 283 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +I+ IR+ P+ I S ++G+P E D F +D + K SF YS GT + Sbjct: 284 LIESIRNTVPEAVIRSTILLGYPTEDDKAFAEVLDFLSKAKLDWVGSFTYSREEGTKAYS 343 Query: 378 MLEQVDENVKAERLL-CLQKKLREQQVSFNDA----CVGQIIEVLIEK--HGKEK--GKL 428 + + E+ KA +L Q +L+ Q +A VG+ EVLIE+ G++ G++ Sbjct: 344 LRGE-REHKKANKLAQGYQAQLQALQGPITNANLARFVGKEYEVLIEELVEGEDLAIGRM 402 Query: 429 VGRSP 433 G++P Sbjct: 403 YGQAP 407 >gi|268325056|emb|CBH38644.1| conserved hypothetical protein, UPF0004 family, radical SAM superfamily, TRAM family [uncultured archaeon] Length = 430 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 119/446 (26%), Positives = 220/446 (49%), Gaps = 50/446 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F++++GC N D++ M + + G+E V +AD++++NTC + ++ L Sbjct: 12 KVFIETFGCTANTGDTMEMRAILRNAGHEIVEE-SEADIVIVNTCTVTKRTE------LN 64 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I+ L + +KE G VVVAGC+A A+ E +V ++G P ++ AR Sbjct: 65 VIKRL--NELKERGK-AVVVAGCMAAAQPE-------LVRSILGDDVAMVTPRDIQ-ARE 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +R+ +F+ GV A +TI +GC CT+C+V RG S Sbjct: 114 KQRL---------EFD-------------GVIAVITIAQGCIGKCTYCIVKQARGKLKSY 151 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ + + +++G EI + Q+ +A+ G LL ++ ++G R+R Sbjct: 152 KPEKICEAVKSAVESGANEIRITSQDSSAY---GWGSTDIKLPALLEQITSVEGDFRIRV 208 Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +P + D L++A + + + + H+PVQSGSDR+L+ M R + ++ +I+ I Sbjct: 209 GMMNPFTLMPILDELLEAF-NTEKIFKFFHVPVQSGSDRVLREMRRNYKVADFVEIVTNI 267 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ IS+DFI+GFP ET++DF A++ L+++I + ++SPR T S + + + Sbjct: 268 RARFRQSTISTDFIIGFPTETEEDFFASLYLLEEIKPEKVNITRFSPRPRTEASKLTDLL 327 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E K R + N G + VL+ + GK KG ++ R +++VL Sbjct: 328 -EREKKRRSRIFSTGYHNIVFAKNKELEGAELPVLVTEPGK-KGGVIARDSAYRAIVLKD 385 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 + +G VR+ + K + L +++ Sbjct: 386 -DLPLGAHYNVRVKEAKSTYLVADIL 410 >gi|262199231|ref|YP_003270440.1| MiaB-like tRNA modifying enzyme [Haliangium ochraceum DSM 14365] gi|262082578|gb|ACY18547.1| MiaB-like tRNA modifying enzyme [Haliangium ochraceum DSM 14365] Length = 449 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 129/397 (32%), Positives = 202/397 (50%), Gaps = 27/397 (6%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 F+ + GC++N + R F G+ V + DDAD++V+NTC + +AA K +GR+ Sbjct: 4 FLTTLGCRLNEAELSRWARDFHRSGHRVVAAADDADVVVVNTCAVTGEAARKSRKLVGRL 63 Query: 88 -RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 R +R+ V+ GC A E E+ + V++VV RL L+ A F Sbjct: 64 HRQRPEARM--------VLTGCFAALE-PEVAQALAGVDMVVANVDKDRLVPLVAEA-FS 113 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + D + GG R AF+ +Q+GC CTFC+V RG E SRS Sbjct: 114 APGMPILATEPDSVHAYADRPGGRTR-----AFIKVQDGCKNRCTFCIVTVARGEERSRS 168 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +++VVDE R L G E L G ++ + G+ L + T D + + ++I RLR + Sbjct: 169 VAEVVDEIRALAAAGYREAVLTGVHLGGY-GRDLGTDLRTLVDAVLADTDI---ARLRLS 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P D+ + + LMP+LHLP+QSGSD +L M RR A ++ ++ R+ Sbjct: 225 SLEPWDLPEDFWTLWRN-PRLMPHLHLPLQSGSDSVLARMARRSRAADFAALVADARAAI 283 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 D+ +++D IVGFPGE+D ++ T+D V +IG+ F YSPR GT + + +QV V Sbjct: 284 ADLTLTTDLIVGFPGESDAEWAETVDYVQRIGFGHMHIFSYSPREGTRAARLSDQVRGPV 343 Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 K R + L ++ + ++ VGQ VL E Sbjct: 344 KRARSREMHALAATMKREHLA---RFVGQERPVLWES 377 >gi|149186943|ref|ZP_01865252.1| hypothetical protein ED21_22333 [Erythrobacter sp. SD-21] gi|148829452|gb|EDL47894.1| hypothetical protein ED21_22333 [Erythrobacter sp. SD-21] Length = 457 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 127/462 (27%), Positives = 205/462 (44%), Gaps = 48/462 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ + GY AD++++NTC + A E+ +G Sbjct: 18 SLGCPKALVDSERILTRLRADGYAMSPDYAGADVVLVNTCGFLDSAKEESLQAIGEA--- 74 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 I E G V+V GC+ + E I P V V G Y + E + + Sbjct: 75 ----IAENGR--VIVTGCMGE-EANAIRAAHPSVLAVTGAHQYEAVVEAVHEHAPPSQGP 127 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D + + + Y+ +L I EGC+ C FC++P RG SR + V Sbjct: 128 YIDLIPQPD---VKLTPRHYS-------YLKISEGCNHSCAFCIIPDLRGKLASRRIDAV 177 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA KL+ G E+ ++ Q+ +A W+G+ + + L L G Sbjct: 178 LREAEKLVAAGTKELLVISQDTSAYGVDTRHESKAWKGREVRAHMTELARELGQLDIGGG 237 Query: 260 L---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + VRL Y +P + + A G +L PYL +P Q S ++L+SM R + Sbjct: 238 MPPWVRLHYVYPYPHVDAVIPLMAEG---LLTPYLDIPFQHASPKVLRSMKRPANEAKVL 294 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 + + R + P+IAI S F+VGFPGETDDDF+ +D +++ + +F++ P G + Sbjct: 295 ERLKGWREICPEIAIRSSFVVGFPGETDDDFKYLLDWLEEAQLDRVGAFRFEPVEGAQAN 354 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--EKGKL--VGRS 432 ++ + V E +K ER + + + A VG+ I V+I++ G+ E G + GRS Sbjct: 355 HLPDPVPEEIKEERYARVMEVTERISSAKLQAKVGRSIPVIIDEVGEPDEDGDIGATGRS 414 Query: 433 ----PWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGEL 467 P + V GDI+ V + D L+G L Sbjct: 415 QADAPEIDGAVYLRNVPGTLAAGDIVNVTVEDADAHDLFGIL 456 >gi|307636979|gb|ADN79429.1| MiaB family protein [Helicobacter pylori 908] gi|325995571|gb|ADZ50976.1| MiaB-like tRNA modifying enzyme [Helicobacter pylori 2018] gi|325997166|gb|ADZ49374.1| putative MiaB like protein [Helicobacter pylori 2017] Length = 418 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 112/395 (28%), Positives = 193/395 (48%), Gaps = 45/395 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+IV+N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIVINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258 S +++++ L GV E+ L G NV ++ RG + + L+ LS+I Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIT 212 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R + P ++D ++ G+ D L +LH+ +Q D +L+ MNRR+ R++ Sbjct: 213 GLKRIRIGSLEPNQINDEFLELLGE-DFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +++I S + AI +DFIVG PGE++ F ++ + F YS R TP S M Sbjct: 272 LEKIAS--KNFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329 Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406 + V V +RL ++ K R+ Q+ N Sbjct: 330 RDSVSLEVSKKRLNAIKDLIFHKNKAFRQLQLKLN 364 >gi|319942388|ref|ZP_08016702.1| ribosomal protein S12 methylthiotransferase rimO [Sutterella wadsworthensis 3_1_45B] gi|319804076|gb|EFW00984.1| ribosomal protein S12 methylthiotransferase rimO [Sutterella wadsworthensis 3_1_45B] Length = 448 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 139/468 (29%), Positives = 216/468 (46%), Gaps = 47/468 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P FV S GC + D+ R+ ++GY ++ DAD++++NTC +A E+ Sbjct: 6 IPVVGFV-SLGCPKALVDTERIVTELRARGYRIGSTYKDADVVIVNTCGFVNEAVEES-- 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVA---QAEGEE-ILRRSPIVNVVVGPQTYYRLPE 138 LG I +KE G V+V GC+ +A+G I+ R P V V GP + + Sbjct: 63 -LGAI----AEALKENGR--VIVCGCLGGRTEADGSNFIMVRHPKVIGVTGPDSVDEVLA 115 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++E V+ + D + G A+L I EGC+ CTFCV+P+ Sbjct: 116 MVEG------VLPRPHDPWDDL----VPAAGVRLTPKHYAYLKISEGCNHHCTFCVIPHL 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFS--------- 248 RG SRS+ ++ EA L GV E+ ++ Q+ A+ G+D K F+ Sbjct: 166 RGSLNSRSMDSIIREAMNLKAAGVKELLVISQDTAAY---GVDKRYKLDFACGRPVHTKL 222 Query: 249 -DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 DL L + RL Y +P + A G +++PYL +P Q RILK M Sbjct: 223 IDLCRELGRLDLWTRLHYVYPYPHVDDIVPLMAEG---LILPYLDVPFQHAHPRILKLMK 279 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + + I R PDI I S FIVGFPGET+ +F +D + + + F Y Sbjct: 280 RPACGEKNLERIAAWRRACPDITIRSTFIVGFPGETEAEFEYLLDFLREAELDRVGCFAY 339 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 SP G +++ + + V+ ER + E + +G+I +V+I++ E G Sbjct: 340 SPVDGAAANDLPGALPDEVREERRRRFMEVQAEISLRKLARRIGRIEDVIIDEEPDEDGV 399 Query: 428 LVGRS----PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELVV 469 VGR+ P + V + + + GDI+ VRIT + L G VV Sbjct: 400 AVGRTKSDAPDIDGVCYVTTDRKLVPGDIVPVRITANEEHDLVGREVV 447 >gi|225848434|ref|YP_002728597.1| hypothetical protein SULAZ_0612 [Sulfurihydrogenibium azorense Az-Fu1] gi|225643287|gb|ACN98337.1| conserved hypothetical protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 405 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 115/424 (27%), Positives = 208/424 (49%), Gaps = 42/424 (9%) Query: 47 MFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106 M + E S +DAD+I++NTC + A E+ + + L+ +KE V+V Sbjct: 1 MLNTTEVEFTQSSEDADVILINTCGFIDAAKEESINTI-----LEAVSLKEKSHKKVIVT 55 Query: 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIV 166 GC+ + +E+ + P V+ + + +P+ L S++ K E I+ Sbjct: 56 GCLVERYKQELEKEIPEVDEFIDLKNQTTIPQKL--------------SIQVKPESKRII 101 Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226 + A+L I EGCD C+FC +P RG S+ + ++V+EA+ L D GV E+ Sbjct: 102 STPKH-----LAYLKISEGCDHTCSFCAIPNIRGKHKSKPIEKLVEEAKYLADQGVKELN 156 Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286 ++ Q+ ++ G + G+ F +LL L +++G+ +R +P +++ K D Sbjct: 157 IVSQD-TSYYGTDIYGKPMLF-ELLRKLEKVEGIKWIRLYYLYPTTVNEDFFKFIKDSQK 214 Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 ++PY+ +P+Q D ILK M R + + QI++ PD+ I S IVG+P E + D Sbjct: 215 VLPYIEMPIQHTQDHILKDMMRGYRKKKLYQILEWKEKYTPDMTIRSSVIVGYPTEKEKD 274 Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ-VSF 405 F + ++ + + + F YS GTP + D+ K E+L + ++ Q+ +++ Sbjct: 275 FLSMLEFLKEAKFDWLGVFTYSHEEGTPAYE--KHKDKIPKKEKLRRFNEVIKLQEDITY 332 Query: 406 --NDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSV--------VLNSKNHNIGDIIKVR 454 N VG+ EV+++ +E L +GRS +S + ++ GDIIKV+ Sbjct: 333 EKNFQTVGKEFEVIVDGFSEEWETLPIGRS--YRSAYDIDGIIYIETTQPLKTGDIIKVK 390 Query: 455 ITDV 458 I +V Sbjct: 391 IKEV 394 >gi|118594973|ref|ZP_01552320.1| hypothetical protein MB2181_04855 [Methylophilales bacterium HTCC2181] gi|118440751|gb|EAV47378.1| hypothetical protein MB2181_04855 [Methylophilales bacterium HTCC2181] Length = 442 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 122/463 (26%), Positives = 221/463 (47%), Gaps = 52/463 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ F+ S GC D+ +M ++GYE N+ +++L+++NTC + A E+ Sbjct: 9 APKIGFI-SLGCPKAGSDTEKMLSQIKAEGYEIANNYKESELVIVNTCGFIDSAVEESLD 67 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--L 140 + + + E G V+V GC+ + + + I +R + + G + Y + E L Sbjct: 68 AI-------SEALDENGK--VIVTGCLGERK-DVIEKRFNNLLAITGSEAYQEVMEAVHL 117 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + +D I G A++ I EGC+ CTFC++P RG Sbjct: 118 HAPKPTNPHIDL------------IPPQGIRLTPKHYAYIKISEGCNHKCTFCIIPSMRG 165 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSD 249 ISR + ++ EA L+++GV E+ ++ Q+ +A W G+ + K + Sbjct: 166 KLISRPIGDIMQEAENLVNSGVSELIIISQDTSAYGVDVKYRPGFWNGRPI---KTDLYN 222 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 L SLSE+ VR Y +P D LI+ +++PY+ +P Q + ILKSM R Sbjct: 223 LAKSLSELGVWVRFHYVYPYPN--VDRLIELMAS-GLILPYIDVPFQHANPTILKSMKRP 279 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 A + I+ R++ P++ I S FIVGFPGET++ F ++ ++ + F YS Sbjct: 280 ANAENNLERINGWRAICPNLTIRSTFIVGFPGETEEQFEDLLEFLELAQLDRVGCFTYSD 339 Query: 370 RLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-- 424 G + + +Q+ E+VK + R + +Q + ++++ N VG + VLI++ G++ Sbjct: 340 VDGATANLLDKQIPEDVKQDRYIRFMTVQNAISKKKL-LNK--VGTVHTVLIDEVGEDYA 396 Query: 425 KGKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYG 465 K + +P + + N + +GD++ V+I + LY Sbjct: 397 KARSYANAPEIDGNIFLENPEGLEVGDMLDVKIKRSEEYDLYA 439 >gi|302522260|ref|ZP_07274602.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB78] gi|302431155|gb|EFL02971.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. SPB78] Length = 499 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 124/460 (26%), Positives = 195/460 (42%), Gaps = 62/460 (13%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G++ V AD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLEADGWDLVEDASHADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 L +LK G VV GC+A+ G+++ P + V+G Y + + L Sbjct: 61 VDALLEANDLKG----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----------------------- 177 + G + ++ D+ + L + GV Sbjct: 117 QTILSGG--IHASHTPRDRRKLLPLSPAARQDASGVALPGHAQQAPEPEDVAPADLPDGL 174 Query: 178 -------------------AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218 A + + GCD+ C+FC +P RG ISR S V+ E R L Sbjct: 175 APASGPRAPLRRRLGASPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLTETRWLA 234 Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278 + GV E+ L+ +N N GK L G+ LL L+ + G+ R+R + P +M LI Sbjct: 235 EQGVREVMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLI 292 Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338 + PY L Q + +L++M R + ++D+IR+ P+ + S+FIVG Sbjct: 293 DVLTSTPKIAPYFDLSFQHSAAGVLRAMRRFGGTDSFLGLLDQIRAKAPEAGVRSNFIVG 352 Query: 339 FPGETDDDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 FPGET++D T +D IG F YS GT + ++DE V AERL Sbjct: 353 FPGETEEDVAELERFLTSARLDAIGV-----FGYSDEEGTEAATYATKLDEEVVAERLAR 407 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 + + E + +G+ +EVL+E E +GR P Sbjct: 408 VSRLAEELTAQRAEERIGETMEVLVESAATEDEPALGRGP 447 >gi|323699272|ref|ZP_08111184.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio sp. ND132] gi|323459204|gb|EGB15069.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio desulfuricans ND132] Length = 442 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 131/457 (28%), Positives = 207/457 (45%), Gaps = 43/457 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTC-HIREKAAEKVYS 82 R + S GC N D+ E + + G V + D ADL+++NTC I+ E V + Sbjct: 10 RTYTVSLGCPKNRVDT---ERLLGALGPHMVPADDAAGADLVLINTCGFIQPAVEESVAT 66 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L I + + G L+ VAGC+ GE++ P V++ + + + P + R Sbjct: 67 ILDVIGEAAETFDRTGRRPLICVAGCLVSRYGEDLRSELPEVDLWLNTEEIEQWPAMAAR 126 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A + DT S+ A+L + EGC C FC +P RG Sbjct: 127 ALALRLTGDTPRSLSTGPSY---------------AYLKVSEGCSHNCRFCTIPSIRGPH 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + +++EAR L+ V EI ++GQ+ A+ G L G LL L+ I L Sbjct: 172 RSWPVDFLLNEAR-LLAGQVPEIIVVGQDSTAY-GSDL-GPGNDLPTLLRGLAAIPDLHW 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 LR +P +++ L+ D +PY +P+Q +L SM R A ++++R Sbjct: 229 LRIMYLYPAGLTESLLGLLRDTGAPFLPYFDIPLQHAHPDVLASMGRPF-ARNPEKVVER 287 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P+ A+ + FIVG+PGET+ FR MD V + + F Y GTP + M Q Sbjct: 288 VRRFFPEAALRTTFIVGYPGETEAHFRTLMDFVRETRFHHLGVFPYWAEEGTPAAAMDGQ 347 Query: 382 VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGRSPWLQS 437 V + VK +RL+ LQ ++ + + + VG + V+IE+ E G VGR+ W Q+ Sbjct: 348 VPDEVKLDRRDRLMALQAEISAEIL---EGYVGATLPVVIERESDEWPGLYVGRA-WFQA 403 Query: 438 VVLNSKNH---------NIGDIIKVRITDVKISTLYG 465 ++ + GDI+ V I L G Sbjct: 404 PEVDGVTYVGAPPETALRPGDILDVEIEKADTYDLSG 440 >gi|195488757|ref|XP_002092449.1| GE14196 [Drosophila yakuba] gi|194178550|gb|EDW92161.1| GE14196 [Drosophila yakuba] Length = 552 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 130/467 (27%), Positives = 224/467 (47%), Gaps = 45/467 (9%) Query: 18 VDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 + ++P Q+ FVK++GC N DS M + GY +++ ++ADL +LN+C ++ Sbjct: 62 IHASVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGY-KLSGKEEADLWLLNSCTVKNP 120 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTY 133 + + RN S ++ G VVVAGCV Q +S +N V+G Q Sbjct: 121 SEDT-------FRNEIESGMRNGKH--VVVAGCVPQGAP-----KSDYLNGLSVIGVQQI 166 Query: 134 YRLPELLERARFGKRV--VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 R+ E++E G V + V + + + RK + ++I GC CT Sbjct: 167 DRVVEVVEETLKGNSVQLLQNKKKVHGRRVAGAPLSLPKVRKNRLIEIISINSGCLNQCT 226 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 +C + RG S +VV+ AR+ G CEI L ++ A+ G+ + + +LL Sbjct: 227 YCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAY-GRDIGS---SLPELL 282 Query: 252 YSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 + L E+ G+ Y H +++ L + +LH+PVQSGSD +L Sbjct: 283 WQLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQHPR-----VYAFLHVPVQSGSDSVL 337 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 M R + ++ ++D +R P + I++D I GFP ET++DF TM L K + F Sbjct: 338 GEMKREYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEEDFEETMTLCAKYRFPSLF 397 Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKH 421 ++ PR GTP + M E++ N+ +R K+L + S+ VG++ VL+ + Sbjct: 398 INQFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAERVGEVYTVLVTEV 452 Query: 422 GKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +K VG + + V+L +++ +G + VRIT ++ GE++ Sbjct: 453 SHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEIL 499 >gi|18313702|ref|NP_560369.1| hypothetical protein PAE2939 [Pyrobaculum aerophilum str. IM2] gi|18161255|gb|AAL64551.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2] Length = 416 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 137/455 (30%), Positives = 221/455 (48%), Gaps = 52/455 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +V++YGC + D+ E + G E ++++++D++++ TC +RE + L Sbjct: 2 RKVYVETYGCWLAKADA---EILRQRLGLELASNVEESDVVLIYTCAVREDGEVRQ---L 55 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 RIR+L S G ++ +VAGC+A+ LR I ++ G Y P+ +E Sbjct: 56 ARIRDLAKS----GREM--IVAGCLAR------LRPYTIKSLAPGAALIY--PQQVEGG- 100 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG---I 201 E + + L GG V + +Q GC CTFC YTRG Sbjct: 101 -----------PEREMKILPEFSGG------VVYTVPLQVGCLGNCTFCATKYTRGGAGY 143 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGL 260 S +VV + +K + G EI L GQ+V + + DLL L E+ G Sbjct: 144 VKSADPEEVVRKVKKAVAMGAREIYLTGQDVITYGFEMRWKRGWNLPDLLERILKEVDGE 203 Query: 261 VRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 R+R S P +D ++ + Y HLPVQSGSD++L+ M R++T EYR+ Sbjct: 204 YRIRIGMSEPWVFEKFADQILDVVKRDRRVYRYFHLPVQSGSDKVLRVMGRKYTVDEYRE 263 Query: 318 IIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++ +IR V + I++D IVGFPGE ++DF AT+ L +++ + + ++SPR T + Sbjct: 264 LVRKIRRVLGETTFIATDIIVGFPGEEEEDFWATVKLAEELQFDKIHVARFSPRPFTEAA 323 Query: 377 NMLEQVDENVKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 M +QV + K R L + L+ V N VG EVLI++ + G +VGR+ Sbjct: 324 VMPKQVPDVEKKRRSKALSEISLKIAHVR-NGLRVGTKDEVLIDEI--DHGLVVGRASDY 380 Query: 436 QSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468 + VV+ H +G VRI LY E++ Sbjct: 381 RQVVVKRGTHRELLGKFTNVRIVAAGPIYLYAEVI 415 >gi|325967748|ref|YP_004243940.1| RNA modification enzyme, MiaB family [Vulcanisaeta moutnovskia 768-28] gi|323706951|gb|ADY00438.1| RNA modification enzyme, MiaB family [Vulcanisaeta moutnovskia 768-28] Length = 452 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 127/458 (27%), Positives = 213/458 (46%), Gaps = 41/458 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + +F V ++GC +N DS + S G+E + AD I++NTC +RE+A Sbjct: 1 MANKFTVITFGCWLNKADSDIVITRLRSLGWEYTEDIKSADTIIINTCAVREEAERNELK 60 Query: 83 FLGRI-RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L ++ N R+ +V GC+ + I +P +V E ++ Sbjct: 61 LLRKLSEEYLNKRL--------IVTGCLTRVRPAMIKDAAPNAVLVTSHGA-----EFID 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR-- 199 G+ + Y ED+ + + Y G + IQ GC C+FCV R Sbjct: 108 EVVNGRNDI---YVYEDR--PMKYLPSYYPEFHGHRYVVPIQVGCLGNCSFCVTKVGRMG 162 Query: 200 -GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYS-LSE 256 G S +S + + + G EI L GQ ++A+ R +G D +DLL + L + Sbjct: 163 FGKVRSYEMSDITNAVANAVSRGAREIYLTGQEISAYGRDRGYD-----LADLLENILGK 217 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP------YLHLPVQSGSDRILKSMNRRH 310 + G +R P ++S + + LD++ + H+PVQSGSDRIL M R++ Sbjct: 218 VDGRFMIRLGMMEPLELSRVIDRL---LDIVKSDWRVYRFFHIPVQSGSDRILTLMKRKY 274 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + ++ I+ RIR V PD I +D IVGFPGETD+DF A++ L++++ + +YS R Sbjct: 275 SVSLFKDIVTRIRRVFPDATIVTDIIVGFPGETDEDFWASVRLIEELSIDKVNLARYSRR 334 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 T + M EQV E +K ER + + + N +G+ + + + + Sbjct: 335 PFTEAAYM-EQVPEQIKKERSKVATEIFNKVALERNKPFIGKEMWGITSEIDFRGENYIV 393 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 RS + + + K +IG +KV++ D L G+L+ Sbjct: 394 RSYNYKPIAV--KKADIGAFVKVKVMDATSHRLLGQLL 429 >gi|313679667|ref|YP_004057406.1| RNA modification enzyme, miab family [Oceanithermus profundus DSM 14977] gi|313152382|gb|ADR36233.1| RNA modification enzyme, MiaB family [Oceanithermus profundus DSM 14977] Length = 445 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 128/448 (28%), Positives = 212/448 (47%), Gaps = 35/448 (7%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +V R V++ GC++N +S + M + E V + ADL+V+NTC + A Sbjct: 15 MVRMRIAVRTLGCKVNQVESDALVGMLAALEPEVVALEEGADLVVINTCSVTTTAESTAR 74 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE-LL 140 + R R + D VVV GC A+ E+I + VV ++ LP +L Sbjct: 75 KEIRRAR-------RANPDAFVVVTGCYAELAPEQIAELG--ADAVVPNRSKAELPRVIL 125 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 E FG + D E + G R V AF+ IQ+GC+ C +C++P TRG Sbjct: 126 EH--FG---LPADPVTAPPNEFWGAGERGLYSDR-VRAFVKIQDGCNAGCAYCIIPRTRG 179 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIK 258 E R V++EA L G E+ L G + ++ G +G+ G LL L+ + Sbjct: 180 RERHRDWRSVLEEAEALAAAGYRELVLTGVRLGSYAGHPRGVAG-------LLEELAAVG 232 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLM-PYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 V LR ++ P D L++ G + P+LHL +Q+G+DR+L M RR+ YR+ Sbjct: 233 --VPLRLSSIEPEDTGPELLEVIGRYAPFVRPHLHLSLQTGADRLLALMGRRYDTAYYRE 290 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++ R+ P A+++D I G P ET+D+ RAT+ + ++ ++ F Y+PR GT + Sbjct: 291 LVAAARARIPGFALTTDVIAGLPTETEDEHRATLAFLREVHPSRVHVFTYTPRPGTRAAR 350 Query: 378 M--LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 + + + + L+ L +L E ++ +G+ VL+E+ G G +P Sbjct: 351 LPQVPHAERKRRTHELIALAGELAEARMR---PLLGRRTAVLVER--VRSGVAYGHTPDY 405 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTL 463 V L + G+ ++ I V+ TL Sbjct: 406 YEVELRGEGLAAGEEVQAVIERVEGYTL 433 >gi|152981113|ref|YP_001353088.1| MiaB-like tRNA modifying enzyme [Janthinobacterium sp. Marseille] gi|238066330|sp|A6SXU1|RIMO_JANMA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|151281190|gb|ABR89600.1| MiaB-like tRNA modifying enzyme [Janthinobacterium sp. Marseille] Length = 453 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 127/476 (26%), Positives = 218/476 (45%), Gaps = 63/476 (13%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS ++ ++GY+ S D ADL+++NTC + A ++ Sbjct: 8 TPKIGFV-SLGCPKALVDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAVQESLD 66 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPE 138 +G + E G V+V GC+ A+G++I+++ P V V GP + + Sbjct: 67 AIGE-------ALHENGK--VIVTGCLGAKKDADGDDIIQKVHPKVLAVTGPHALGEVMD 117 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + + D + G A+L I EGC+ C+FC++P Sbjct: 118 AVHKHMPKPHAPFIDL----------VPAQGIKLTPKHFAYLKISEGCNHRCSFCIIPSM 167 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR ++ V+ EA L GV E+ ++ Q+ +A W GK + K Sbjct: 168 RGDLVSRPIADVMMEAENLFKAGVKELLVISQDTSAYGVDVKFRMGFWNGKPV---KTHM 224 Query: 248 SDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 + L+ +L E+ VRL Y +P + + A G ++PYL +P+Q +L Sbjct: 225 TQLVEALGELAKQYGAWVRLHYVYPYPHVDAIIPMMAEGK---ILPYLDVPLQHAHPDVL 281 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 K M R + + + I R++ PD+ I S FI GFPGETD +F +D + + + Sbjct: 282 KRMKRPASGEKNIERIQAWRAMCPDLTIRSTFIAGFPGETDAEFEYLLDFLKEAEIDRLG 341 Query: 364 SFKYSPRLGTPGSNMLEQVD---ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 F YSP G +++ V + R++ LQ+++ ++++ A VG+ + VL+++ Sbjct: 342 CFAYSPVEGATANDLPNAVPEEVREERRGRVMLLQEEISKKRLQ---AKVGKTMRVLLDE 398 Query: 421 HGKEKGKLVGRS----PWLQSVVLNSKNH------NIGDIIKVRITDVKISTLYGE 466 + G V RS P + VV + +G+ I V+IT L+ E Sbjct: 399 VNRNGG--VARSGADAPEIDGVVYVKPPYEPHLKLKVGEFIDVKITGADAHDLWAE 452 >gi|89053506|ref|YP_508957.1| ribosomal protein S12 methylthiotransferase [Jannaschia sp. CCS1] gi|123286909|sp|Q28TN0|RIMO_JANSC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|88863055|gb|ABD53932.1| SSU ribosomal protein S12P methylthiotransferase [Jannaschia sp. CCS1] Length = 458 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 125/454 (27%), Positives = 202/454 (44%), Gaps = 33/454 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + S GC + DS R+ ++GY A+ +++NTC + A + +G Sbjct: 27 RIGMVSLGCPKALVDSERILTRLRAEGYAISPDYTGAEAVIVNTCGFLDSAKLESLEAIG 86 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 V+V GC+ AE E I P V V GPQ Y ++ + + A Sbjct: 87 EALEANGK---------VIVTGCLG-AEPEYITGAHPTVLAVTGPQQYEQVLDAVHGAV- 135 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 D F L + G A+L I EGCD C FC++P RG +SR Sbjct: 136 --------PPAPDPFIDL-LPPAGVKLTPRHYAYLKIAEGCDHKCKFCIIPDMRGKLVSR 186 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDG-EKCTFSDLLYSLSEIKGL 260 + V+ EA KL+D+GV E+ ++ Q+ +A W+ + G EK +L LS + Sbjct: 187 PQTAVMREAEKLVDSGVKELLIISQDTSAYGVDWKDRNKAGDEKFPILNLSRDLSTLGAW 246 Query: 261 VRLRYTTSHPRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P LI D + L+PYL +P Q +LK M R A I Sbjct: 247 VRLHYVYPYPHVRE--LIPLMADPANGLLPYLDIPFQHAHPDVLKRMARPAAASRTLDEI 304 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R P+I + S FIVG+PGET+ +F+ +D +D+ + F+Y G + + Sbjct: 305 AAWRRDCPNITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRIGCFQYENVDGARSNALP 364 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQS 437 + V VK +R +K + + A VG+ ++VL++ +E + V +P + Sbjct: 365 DHVAPEVKQDRWDRFMEKAQAISEAKLQAKVGRTMQVLVDSVDEEGATCRTVADAPEIDG 424 Query: 438 VVLNSKNHN---IGDIIKVRITDVKISTLYGELV 468 + + + GD++ V + + L+G+L Sbjct: 425 NLFIDEGFDGLTPGDLVTVEVDEASEYDLWGKLT 458 >gi|163744236|ref|ZP_02151596.1| RNA modification enzyme, MiaB-family, putative [Oceanibulbus indolifex HEL-45] gi|161381054|gb|EDQ05463.1| RNA modification enzyme, MiaB-family, putative [Oceanibulbus indolifex HEL-45] Length = 457 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 121/448 (27%), Positives = 205/448 (45%), Gaps = 40/448 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 33 SLGCPKALVDSERILTRLRAEGYGVSPDYAGADAVIVNTCGFLDSAKAESLDAIGEA--- 89 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ AE + I P + V GP Y E + A G Sbjct: 90 ----LKENGK--VIVTGCLG-AEPDYIREHHPKILAVTGPHQY----EQVLDAVHGAVPP 138 Query: 151 DTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 D ++ +++S+ Y+ +L I EGC+ C FC++P RG SR Sbjct: 139 SPDPFIDLLPAQQVSLTPRHYS-------YLKISEGCNHKCKFCIIPDMRGRLQSRPAHA 191 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVR 262 V+ EA +L+DNGV E+ ++ Q+ +A+ G+D G + +DL L + VR Sbjct: 192 VMREAERLVDNGVKELLVISQDTSAY---GVDIKHAEDRGHRAHITDLARDLGSLGAWVR 248 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G +++PYL +P Q +LK M R A + I Sbjct: 249 LHYVYPYPHVRKLIPLMAEG---LVLPYLDIPFQHAHPDVLKRMARPAAASKTLDEIAAW 305 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PDI + S FIVG+PGET+ +F+ +D +D+ + F+Y G + + + V Sbjct: 306 RDTCPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVEGARSNALPDHV 365 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL 440 VK +R +K + + A VG+ I+V++++ ++ + +P + + Sbjct: 366 PAEVKQDRWDRFMEKAQAISEAKLAAKVGKRIDVIVDEIDEDAATCRTKADAPEIDGNLF 425 Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYG 465 + +N +GDI+ V + + L+G Sbjct: 426 IDEDFQNLKVGDIVTVEVEEAGEYDLWG 453 >gi|145220029|ref|YP_001130738.1| MiaB-like tRNA modifying enzyme YliG [Prosthecochloris vibrioformis DSM 265] gi|238066480|sp|A4SFH7|RIMO_PROVI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|145206193|gb|ABP37236.1| SSU ribosomal protein S12P methylthiotransferase [Chlorobium phaeovibrioides DSM 265] Length = 434 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 131/455 (28%), Positives = 209/455 (45%), Gaps = 43/455 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFL 84 R F+ S GC N DS R+ + G S DA+ I++NTC I + E + L Sbjct: 7 RVFLLSLGCSKNTVDSERLMAQAEAAGVVFTESASDAETIIINTCGFIADAKEESINETL 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I ++ R+++ + V GC+ + E+ P V+ G + LP +L Sbjct: 67 AAITEKESGRVRK-----IFVMGCLPELYRSELQTELPEVDGFFGTR---ELPAIL---- 114 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + Y E R S+ G+ T+FL I EGC + C+FC +P RG IS Sbjct: 115 ---TAIGARYRSELHLHR-SLTAPGH------TSFLKISEGCSRSCSFCSIPRIRGPYIS 164 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263 + L Q++ EAR L + GV E+ ++ Q++ + G L G + +DLL LS++ +RL Sbjct: 165 QPLDQLLREARLLQEKGVQELNIIAQDITLY-GVDLYGRQ-MLNDLLLRLSDMAFHWIRL 222 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P + +I+ + YL LP+Q +DRIL+SMNR T +I+ IR Sbjct: 223 LY--AYPLNFPLEVIETMSQRGNICNYLDLPLQHCNDRILRSMNRGITKEGELALIEAIR 280 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PDI + + I G+PGET +F ++ + + + F Y +P + + V Sbjct: 281 QKNPDIRLRTTMIAGYPGETRQEFEELLEFAATVRFDRLGCFSYCHEEFSPAFALEDSVP 340 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV- 439 E K R L+ LQ+ + E++ N G+ I V I++ E+ GR+ W V Sbjct: 341 EEEKQSRTAELMELQEGISEEK---NKRLEGREIAVCIDR--IEENTAWGRTEWDAPEVD 395 Query: 440 ----LNSKNHNI--GDIIKVRITDVKISTLYGELV 468 L H I G RI L+G ++ Sbjct: 396 NECSLEGAGHTIAPGSFCLARIDGSSPYELFGTVL 430 >gi|333024071|ref|ZP_08452135.1| hypothetical protein STTU_1575 [Streptomyces sp. Tu6071] gi|332743923|gb|EGJ74364.1| hypothetical protein STTU_1575 [Streptomyces sp. Tu6071] Length = 499 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 124/460 (26%), Positives = 195/460 (42%), Gaps = 62/460 (13%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G++ V AD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLEADGWDLVEDASHADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 L +LK G VV GC+A+ G+++ P + V+G Y + + L Sbjct: 61 VDALLEANDLKG----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----------------------- 177 + G + ++ D+ + L + GV Sbjct: 117 QTILSGG--IHASHTPRDRRKLLPLSPAARQDAPGVALPGHAQQAPEPEDVAPADLPDGL 174 Query: 178 -------------------AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218 A + + GCD+ C+FC +P RG ISR S V+ E R L Sbjct: 175 APASGPRAPLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLTETRWLA 234 Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278 + GV E+ L+ +N N GK L G+ LL L+ + G+ R+R + P +M LI Sbjct: 235 EQGVREVMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLI 292 Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338 + PY L Q + +L++M R + ++D+IR+ P+ + S+FIVG Sbjct: 293 DVLTSTPKIAPYFDLSFQHSAAGVLRAMRRFGGTDSFLGLLDQIRAKAPEAGVRSNFIVG 352 Query: 339 FPGETDDDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 FPGET++D T +D IG F YS GT + ++DE V AERL Sbjct: 353 FPGETEEDVAELERFLTSARLDAIGV-----FGYSDEEGTEAATYATKLDEEVVAERLAR 407 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 + + E + +G+ +EVL+E E +GR P Sbjct: 408 VSRLAEELTAQRAEERIGETMEVLVESAATEDEPALGRGP 447 >gi|313672567|ref|YP_004050678.1| miab-like tRNA modifying enzyme [Calditerrivibrio nitroreducens DSM 19672] gi|312939323|gb|ADR18515.1| MiaB-like tRNA modifying enzyme [Calditerrivibrio nitroreducens DSM 19672] Length = 415 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 103/395 (26%), Positives = 208/395 (52%), Gaps = 27/395 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 ++GC++N+ ++ +++ +G++ +S++++D+IV+N+C + + A +K +L +++ Sbjct: 7 TFGCKVNLVETENLKEKANLEGFKYTDSIEESDVIVVNSCAVTDNAEKKSLHYLKKLK-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++ + +V+ GC+A+ + + I +V + + + + E + + Sbjct: 65 -----QKFPEKKIVLTGCLAEMKKDLIKDADILVTNIAKDEIFKYIKENKHQLT---PIN 116 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + DY E S + ++ RG FL IQ+GCD FC++C++P RG S+S + Sbjct: 117 ELDYYKE------SFPNAIVDKTRG---FLKIQDGCDAFCSYCIIPNLRGKPRSKSEEII 167 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 + E +L+D G EI L+G ++ + G+D L + +I G R+R ++ Sbjct: 168 IREFSQLVDKGFKEIVLVGIHIGKY---GIDTNTDLKKLLKKLI-QIDGNFRIRLSSLEL 223 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 ++ +I+ + D + +LH+P+Q +++ILK MNR +T ++ ++ ++S + Sbjct: 224 NEIDQEMIEIILNSDKICKHLHIPLQGSTNKILKLMNRHYTFEKFASTVEYLKSRNEFLT 283 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I +D I GFPGET++DF D + K+ + F +S R GT S + ++V +K +R Sbjct: 284 IGTDVITGFPGETEEDFTIGYDNLLKLPISYMHVFPFSERKGTKASILPDKVSNEIKKKR 343 Query: 391 LLCLQKKLREQQVSFNDA--CVGQIIEVLIEKHGK 423 L + L E + FN A G + +VL EK + Sbjct: 344 SGML-RDLSESK-RFNSAKRLFGTVQKVLAEKDNR 376 >gi|312892376|ref|ZP_07751871.1| Protein of unknown function UPF0004 [Mucilaginibacter paludis DSM 18603] gi|311295160|gb|EFQ72334.1| Protein of unknown function UPF0004 [Mucilaginibacter paludis DSM 18603] Length = 301 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 80/216 (37%), Positives = 129/216 (59%), Gaps = 7/216 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +++SYGC MN DS + + QG+E ++AD+I +NTC IRE A ++V + Sbjct: 32 RKLYIESYGCAMNFSDSEIVASILLDQGFETTTDFNNADVIFINTCSIRENAEQRVRN-- 89 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R++ K ++ + G ++V V GC+A+ + L +V+VVVGP Y LP L+++ Sbjct: 90 -RLKEFKVAKKRNPG-MVVGVLGCMAERLKSKFLEEEKLVDVVVGPDAYRDLPNLIDQVD 147 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+R V+ S E+ + ++ V N G+ AF++I GCD C+FCVVP+TRG E S Sbjct: 148 SGQRAVNVLLSREETYADINPVRLNSN---GINAFVSIMRGCDNMCSFCVVPFTRGRERS 204 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240 R +V E L + G E+TLLGQNV++++ + L Sbjct: 205 RDAISIVKECTDLFNQGYREVTLLGQNVDSYKWEPL 240 >gi|332300096|ref|YP_004442017.1| MiaB-like tRNA modifying enzyme [Porphyromonas asaccharolytica DSM 20707] gi|332177159|gb|AEE12849.1| MiaB-like tRNA modifying enzyme [Porphyromonas asaccharolytica DSM 20707] Length = 454 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 110/420 (26%), Positives = 203/420 (48%), Gaps = 36/420 (8%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------ADLIVLNTCHIREK 75 +V +R + GC++N ++ + + G ER++ D+ ++N+C + + Sbjct: 10 LVGKRAAFYTLGCRLNYAETSTIARQLATVGVERISDEHHHTTEVVPDICIVNSCSVTDT 69 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A +K S + R+ +E + L+VV GC AQ +GE+I + P V++VVG Sbjct: 70 ADKKCRSLINRLH-------REYPEALIVVTGCYAQLQGEQIAQ-MPGVDLVVGSGRKSE 121 Query: 136 LPELL-------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188 + LL + R +V + + + +R R FL +Q+GC+ Sbjct: 122 IVSLLTELYQKRNQERTQPQVATPHVTARRELQHFEPSVSSDDRTRH---FLKVQDGCNY 178 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248 +CT+C +P RGI + S++ +V +A ++ + G EI L G N+ + G+ GE T Sbjct: 179 YCTYCTIPAARGISRNGSIASLVAQAERVAELGGKEIILTGVNIGDF-GR-TTGE--TLL 234 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 +LL+ L+++ G+ R R + P ++ +I+ + MP+ H+P+QSGSD++L+ M R Sbjct: 235 ELLHQLTQVAGIARYRIGSIEPELLTPEIIQFVAETAQFMPHFHIPLQSGSDQVLRLMRR 294 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + + + + I + PD + D I G GE + T+ + + ++Q F YS Sbjct: 295 HYDTALFAERLKLIYELIPDAFVGIDVIAGMRGELSEHHAETLAFLKEQPWSQLHVFPYS 354 Query: 369 PRLGTPGSNMLEQV---DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGK 423 R GT + V ++ ++ + LL L E+ +F G + VL E +HG+ Sbjct: 355 ERKGTKALEIKPAVPAAEKKLRTQELLALSS---ERHNAFCAPFTGSVRPVLWEETRHGE 411 >gi|332298374|ref|YP_004440296.1| MiaB-like tRNA modifying enzyme [Treponema brennaborense DSM 12168] gi|332181477|gb|AEE17165.1| MiaB-like tRNA modifying enzyme [Treponema brennaborense DSM 12168] Length = 515 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 131/481 (27%), Positives = 215/481 (44%), Gaps = 60/481 (12%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE-------RVNSMDDADLIVLNTCHIREK 75 VP ++ GC++N +S F G+ ++ A L V+NTC + K Sbjct: 23 VPPAVHFETLGCKLNQIESESAARYFSDAGFTVDMEPATAADAPGAAVLCVVNTCTVTGK 82 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP--QTY 133 A +K R + +++ + V+V GC A+ + ++ V V+ G T Sbjct: 83 AEQKA-------RRVIRLLLRKYENAAVLVTGCYAELDAPQLAAIDGRVCVLPGSLKDTL 135 Query: 134 YRLPELL-----------ERARFGKRVVDTDYS----VEDKFERLSIVDGGYNRKRGVTA 178 +P E A F +R V + S V RL+ D + R A Sbjct: 136 ADIPARFRSFIAADVTASECAAFLRRAVAAEKSAGGAVYTPTFRLA-TDTFFTHSR---A 191 Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238 + IQ+GC+ CT+C + RG +S + V++ R + E+ L G N++ +RG Sbjct: 192 SIKIQDGCNNACTYCRIHLARGKAVSLDAASVLERVRSIEARNQHEVVLTGVNLSQYRGS 251 Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD--CLIKAHGDLDVLMPYLHLPVQ 296 + LL L + +R R ++ +P + D C + AH + +MP+ HL VQ Sbjct: 252 -FGSFFLDIAGLLRFLLDNTERIRFRLSSLYPERVDDALCEVIAH---ERIMPHFHLSVQ 307 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 SGSDRIL M R +T+ + ++R+R+V+ + I+ D I GFPGE+DDDF TM+L Sbjct: 308 SGSDRILTLMRRPYTSADVAAAVERLRAVKRNPFIACDIIAGFPGESDDDFGQTMELCRS 367 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416 +A +F +SPR GTP M V ++ A R+ L + + ++ + G ++ Sbjct: 368 CRFAWIHAFPFSPRPGTPAYAMKPVVPQSTAAHRVRRLTEFAIASKCAYISSYKGTVVSA 427 Query: 417 LIEKHGKEK-------------GKLVGRSPWLQSVVLN------SKNHNIGDIIKVRITD 457 + E++ K++ G RSP +V N + G I VRITD Sbjct: 428 ITEQNRKDRKAAFETTAADDAGGARTVRSPVTHAVTSNFIHVELPGSFAPGSRIAVRITD 487 Query: 458 V 458 Sbjct: 488 A 488 >gi|84496907|ref|ZP_00995761.1| hypothetical protein JNB_05270 [Janibacter sp. HTCC2649] gi|84383675|gb|EAP99556.1| hypothetical protein JNB_05270 [Janibacter sp. HTCC2649] Length = 466 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 123/420 (29%), Positives = 192/420 (45%), Gaps = 23/420 (5%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V + GC N DS + + G+ V+ +AD+ V+NTC E+A + L Sbjct: 13 VVTLGCTRNDVDSEELAGRLKAGGWTLVDDASEADVAVVNTCGFVEQAKKDSIDSL---- 68 Query: 89 NLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 ++ S +KE G VVA GC+A+ G+ + P + V+G +Y + L G Sbjct: 69 -IEASALKETGRTQKVVAVGCLAERYGQTLADELPEADAVLGFDSYADMSTHLRTILDGG 127 Query: 148 RVVDTDYSVEDKFERLSIVD----------GGYNRKR-----GVTAFLTIQEGCDKFCTF 192 V S K LS V G++ R G A L I GCD+ C F Sbjct: 128 TVKSHVPSDRRKLLPLSPVTRQEASADVALPGHSAPRARLDSGPWAPLKIASGCDRRCAF 187 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 C +P RG +SR + V++EAR L GV E+ L+ +N ++ GK L G+ LL Sbjct: 188 CAIPMFRGSFVSRRPTDVIEEARWLATQGVRELFLVSENSTSY-GKDL-GDLALMDALLP 245 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L++I G+ R+R + P ++ L+ A + +MP+ L Q S +L+ M R Sbjct: 246 ELADIDGIERVRVSYLQPAEVRPGLLDAMVAIPEVMPWFDLSFQHASAPLLRRMRRFGGT 305 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + +ID +R P I S+ IVGFPGET+ + + F YS G Sbjct: 306 EPFLGLIDDVRRRSPLAGIRSNVIVGFPGETEAEVDELAQFLTAARLDVVGVFGYSDEDG 365 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 T G + +VD A+R+ + + E + +G+ + VLIE+ E G ++GR+ Sbjct: 366 TEGELLPNKVDAQDIADRVARITDLIEELTTQRAEDRIGESVRVLIEEVDDETGDVIGRA 425 >gi|220920232|ref|YP_002495533.1| MiaB-like tRNA modifying enzyme [Methylobacterium nodulans ORS 2060] gi|219944838|gb|ACL55230.1| MiaB-like tRNA modifying enzyme [Methylobacterium nodulans ORS 2060] Length = 412 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 113/353 (32%), Positives = 166/353 (47%), Gaps = 28/353 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL-GRI 87 V S+GC++N E + E DL+V+NTC + +A + + G Sbjct: 5 VLSFGCRLNTA-----EGEVLRRAAE--TGRPGEDLVVVNTCAVTAEATRQARKAIRGAA 57 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 R +RI VV GC AQ E P V ++G + +L R G Sbjct: 58 RRTPGARI--------VVTGCGAQVE-TAAYAAMPEVAAIIG--NHAKLSPAAWADRAGG 106 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 RV VED R G T A L +Q GCD CTFCV+P+ RG S Sbjct: 107 RV-----RVEDIMAVREAAAAPTPRMPGRTRAVLPVQNGCDHRCTFCVIPFGRGPSRSLP 161 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVRLRY 265 + + + +AR L+++G E+ L G ++ A+ G+ L E + L+ + L + L RLR Sbjct: 162 VQEAIAQARALVEDGAREVVLTGVDLTAY-GRDLP-EAPSLGGLVKAILRALPDLDRLRL 219 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++ + L+ A LMP+LHL +Q+G D ILK M RRH + + +R + Sbjct: 220 SSIDSVEADADLLDALASERRLMPHLHLSLQAGDDLILKRMKRRHARADAIAFCETVRRL 279 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 RP+I +D I GFP ET+ F ++ LV++ G A F YSPR TP + M Sbjct: 280 RPEIVFGADLIAGFPTETEAQFGRSVALVEECGLAHLHVFPYSPRPETPAARM 332 >gi|300176745|emb|CBK24410.2| unnamed protein product [Blastocystis hominis] Length = 507 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 103/386 (26%), Positives = 189/386 (48%), Gaps = 40/386 (10%) Query: 17 IVDQCIVPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74 + CI+P+++ ++ ++GC N D M+ + G++ + D+A L VLN+C +++ Sbjct: 42 VAGDCIIPEKYKLWIITFGCAHNFADGEYMKGILSDYGFQFAENRDEASLWVLNSCTVKD 101 Query: 75 KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134 + +++ + KN +VVVAGCV QA+ + R ++G + + Sbjct: 102 PSEIVFRNYVTEAKE-KNK--------MVVVAGCVPQADSDASWLRD---LSILGVKQIH 149 Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 R+ E++E G + + L +D R+ + I EGC CT+C Sbjct: 150 RIVEVVEETLKGNTIHLLS------LKELPPLDLPKIRRDPHIEIVPISEGCLGHCTYCK 203 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 Y RG +S L +++ R D V E+ L ++ A+ G+D + +DLL + Sbjct: 204 TQYARGKLMSYPLQSIINRLRAAFDEHVFEVWLSSEDTGAY---GID-RGLSIADLLKEI 259 Query: 255 SEI-----KGLVRL-----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 + +VRL Y SH ++++ L + + ++H+PVQSGS+ +L Sbjct: 260 PSVIPDQSNTMVRLGMTNPPYVLSHLKEVAAFLRHPN-----VFSFIHIPVQSGSNAVLN 314 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 +M R++T ++ I+D + P + I++D I+GF ETD+D + TMDL+ K + Sbjct: 315 TMQRQYTVEQFTSIVDYLLKEVPGLTIATDIIIGFASETDEDHKQTMDLLKKYQFPVVNI 374 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAER 390 K+ PR GTP + M + + ++ ER Sbjct: 375 SKFFPRPGTPAARM-KHISSSIVKER 399 >gi|282858818|ref|ZP_06267963.1| MiaB-like protein [Prevotella bivia JCVIHMP010] gi|282588387|gb|EFB93547.1| MiaB-like protein [Prevotella bivia JCVIHMP010] Length = 450 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 129/452 (28%), Positives = 207/452 (45%), Gaps = 45/452 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK----VYSFL 84 + GC N+ DS + F + G+E + + + ++ V+NTC E A E+ + F+ Sbjct: 28 TMGCSKNLVDSELLMKQFEANGFECTHDTEQPEGEIAVINTCGFIETAKEESINTILEFV 87 Query: 85 GRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 R KE G L + V GC++Q +E+ + P V+ G Y +L Sbjct: 88 NR---------KEKGQLNKLFVMGCLSQRYKDELEKEIPEVDKFYGKFNYKQL-----LT 133 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GK V + V R Y A++ I EGCD+ C +C +P G Sbjct: 134 DLGKADVTSCNGV-----RHLTTPRHY-------AYIKIAEGCDRHCAYCAIPLITGKHR 181 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + ++ E +L+ GV E ++ Q + + G LDG K ++L+ +++IKG+ + Sbjct: 182 SRKMEDILQEVEQLVAQGVKEFQVIEQELTYY-GVDLDG-KHHITELISRMADIKGVEWI 239 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++P L+ + YL + Q SD +L M+R + E +I IR Sbjct: 240 RLHYAYPNQFPFDLLDVIAQKPNVCKYLDIAFQHISDHMLDRMHRHVSKQETINLIKEIR 299 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382 S P I + + +VGFPGETD+DF D V ++ + + +F YS GT + E V Sbjct: 300 SRVPSIHLRTTLLVGFPGETDEDFEELKDFVREVRFERMGAFAYSREEGTYSAEHYEDDV 359 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438 E VK +RL L +E + +GQ +V+I++ +E +GR SP + Sbjct: 360 PEEVKQQRLDELMAIQQEISTELEETKIGQTFKVIIDR--EEGDYYIGRTEFCSPDVDPE 417 Query: 439 VLNSKNH---NIGDIIKVRITDVKISTLYGEL 467 VL S +G+ V ITD LYGE+ Sbjct: 418 VLISIGEVPLRVGEFYNVYITDSDEFDLYGEV 449 >gi|68445550|dbj|BAE03259.1| hypothetical conserved protein [unclutured Candidatus Nitrosocaldus sp.] Length = 454 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 131/470 (27%), Positives = 220/470 (46%), Gaps = 52/470 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + +++ YGC ++ D + + +GYE ++ D+AD ++ TC +++ A ++ Sbjct: 9 KVWLEVYGCSSSLSDGEIIAGIIVGKGYELASNFDEADASIIVTCVVKDATANRMVE--- 65 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIK +VVAGC+A+AE I R +P ++V GP R+ L A Sbjct: 66 --------RIKRLSSKPLVVAGCMAKAEPNRIRRFNPRASIV-GPNAIDRVDTALASALD 116 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 GK +V D S++ V R V + + I GC CTFC +G S Sbjct: 117 GKGIVLLDGSMQK-------VGLPKIRVNPVISMVQIGSGCLSECTFCETRIAKGRLTSY 169 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +V + R+ ++ G E+ L + A+ G+ + +L+ ++ I +R Sbjct: 170 RIGDIVRQVREDVEQGCREVWLTSTDNGAY-GRDI---GTNLVELIKAVCSIDAEFMIRV 225 Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +P+ M D LI+A+ D D + ++H+PVQSGSDR+L+ M R H A + ++ R Sbjct: 226 GMMNPQYLPLMLDDLIEAYRD-DKVFKFIHIPVQSGSDRVLRLMRRGHRASTFIDMVKRF 284 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R I++D IVGFP E+++DF A++DL+ ++ KYS R GT S M EQ+ Sbjct: 285 RRELKLCTIATDMIVGFPSESEEDFDASIDLLLEVEPDIVNVSKYSARPGTEASRM-EQL 343 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL-- 440 + V ER + + S N A G VL+++ G + GR+ + + L Sbjct: 344 SKQVINERSKVMHDVVSRVCYSRNLAWKGWEGTVLVDELTDAGGGVQGRNFAYKPIYLIR 403 Query: 441 ---------------NSKNHNI-------GDIIKVRITDVKISTLYGELV 468 NS N+++ G I+VRI V +L G ++ Sbjct: 404 KGRADNNYDDYSNGHNSFNNDVNNARRLLGSWIRVRIDRVTTHSLVGSII 453 >gi|298373586|ref|ZP_06983575.1| Fe-S oxidoreductase [Bacteroidetes oral taxon 274 str. F0058] gi|298274638|gb|EFI16190.1| Fe-S oxidoreductase [Bacteroidetes oral taxon 274 str. F0058] Length = 417 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 106/378 (28%), Positives = 183/378 (48%), Gaps = 21/378 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + + G+ + AD+ ++NTC + + A +K + +I + Sbjct: 8 TLGCKLNFAETSYIGRLLVANGFSIAGKGEKADVCIVNTCSVTDTADKKCRQAIHKISSA 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY---RLPELLERARFGK 147 + V+V GC AQ E+ + V++V+G + + ++ LE Sbjct: 68 -------NPNAFVIVTGCYAQINPAEV-EQIEGVDLVLGAKEKFDILKIMHSLESKEQFD 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 RV + + FE I G +R R FL +Q+GC+ +CT+C +P+ RG S S+ Sbjct: 120 RVQVANIRDNNFFE--PIFSAG-DRTR---YFLKVQDGCNYYCTYCTIPFARGKSRSASV 173 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + +D R+ I G EI L G N+ G +G F DL+ ++ ++ VR R ++ Sbjct: 174 AVTMDTIRRAIAEGAREIILTGVNI----GDFGNGSSERFIDLVRNIDDMTDEVRFRISS 229 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P + D +I+ + P+ H+P+QSGS+R+L+ M RR+T + Q + I+S+ P Sbjct: 230 VEPNLLEDDIIRLIAHSRRIAPHFHIPLQSGSNRVLELMQRRYTREIFAQKVATIKSLMP 289 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 I D IVG GET D F T+ + + +++ F YS R GT N+ V K Sbjct: 290 HAFIGVDVIVGMRGETPDMFDETVQFLAETPFSELHIFPYSEREGTRALNISPVVSVQEK 349 Query: 388 AERLLCLQKKLREQQVSF 405 R L + +E F Sbjct: 350 KRRSEILHRMSQEHVEEF 367 >gi|308809904|ref|XP_003082261.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri] gi|116060729|emb|CAL57207.1| Predicted Fe-S oxidoreductase (ISS) [Ostreococcus tauri] Length = 440 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 119/445 (26%), Positives = 198/445 (44%), Gaps = 66/445 (14%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + S GC N D + + G+E + + AD I++N+C E A + + Sbjct: 12 RVSMVSLGCPKNTVDGEVILGDLHANGFEITDDHEAADAIIINSCGFVEDAKNESVEAIL 71 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE------- 138 L+ + D ++V GC+AQ ++ P +V+VG + Y LP Sbjct: 72 EAAKLRTESGR--SDTKIIVTGCLAQRYANDLANELPEADVIVGFENYGNLPRTVGGALG 129 Query: 139 --------LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 L ++AR +V ++ +RL I Y A+L + EGCD C Sbjct: 130 VEATPGVLLPQQARV--QVGGASPPFREETKRLRITPRHY-------AYLRVAEGCDHKC 180 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---GEKCTF 247 TFC +P RG S+ +VDEA+ L D+GV E+ L+ ++ N W G+D + Sbjct: 181 TFCAIPSFRGRFRSKPFGAIVDEAKALADSGVRELNLIAEDTNQW---GMDLRASDGRGL 237 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 ++LLY+L+E+ G+ +R ++P SD LI+A Sbjct: 238 AELLYALAEVDGIEWMRILYAYPSYFSDELIQAI-------------------------- 271 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R ++ DRI P +A+ + FI GFPGET+++ M + + +F Y Sbjct: 272 RTXXXXXXXKLRDRI----PGLALRTTFISGFPGETEEEHNELMQFCRDFKFERLGAFAY 327 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK 427 S GTP +QV E+V+A R L + +E F + VG+ ++VLI+ + Sbjct: 328 SEEDGTPAMEYPDQVPEDVRAFRRDQLVSQQQEISEDFAMSRVGKDVDVLIDSWDDDMQA 387 Query: 428 LVGRS----PWLQSVVLNSKNHNIG 448 +GR+ P + VV +++ + G Sbjct: 388 FIGRTTLEAPDIDPVVFVTEDESKG 412 >gi|307565379|ref|ZP_07627870.1| MiaB-like protein [Prevotella amnii CRIS 21A-A] gi|307345911|gb|EFN91257.1| MiaB-like protein [Prevotella amnii CRIS 21A-A] Length = 452 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 110/404 (27%), Positives = 188/404 (46%), Gaps = 22/404 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ ++ G + AD++++NTC + + A K R + Sbjct: 16 TLGCKLNFSETSTFARTLYNMGVREAKKNEIADIVLINTCSVTDVADHKC-------RQI 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG---K 147 N +++ V+V GC AQ E + I V++V+G L + L A K Sbjct: 69 INRMVRQNPGAFVIVTGCYAQLESQTIANIIG-VDLVLGSNEKANLIQYLSNAWNNIEEK 127 Query: 148 RVVDTD-----YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 +D ++V+ K ++ +R FL +Q+GC+ FCT+C +PY RG Sbjct: 128 TPIDNTQKKIYHTVKTK--DITSFQDSCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFS 185 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 + + +V +A + + G EI L G N+ + G+ + +F DL+ +L +KG+ R Sbjct: 186 RNPPIKSLVKQAEEAVAEGGREIVLTGVNIGDF-GRTTNE---SFLDLVKALDNVKGIER 241 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 R ++ P + D LI+ + MP+ H+P+QSGSD +LK M+R + + I I Sbjct: 242 YRISSLEPDLIDDDLIEYCATSEHFMPHFHIPLQSGSDEVLKLMHRHYDRALFADKILLI 301 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + P+ I D +VG GE + F + + +D + Q F YS R GT ++ V Sbjct: 302 KERMPNAFIGVDVMVGCRGEKPEFFEDSYNFIDSLPITQLHVFPYSERPGTSALSIPYIV 361 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 D K R L K + +F +G+ VL EK + K Sbjct: 362 DPREKKHRANRLLKLSDLKTQTFYAKYIGKEANVLFEKAARGKS 405 >gi|241558622|ref|XP_002400268.1| conserved hypothetical protein [Ixodes scapularis] gi|215499750|gb|EEC09244.1| conserved hypothetical protein [Ixodes scapularis] Length = 460 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 132/427 (30%), Positives = 208/427 (48%), Gaps = 41/427 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + +VK++GC N DS M ++GY V ADL +LN+C ++ A + F Sbjct: 56 HKIYVKTWGCAHNSSDSEYMAGQLAAKGYSIVEDASSADLWLLNSCTVKNPAEDH---FR 112 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPELLERA 143 G I +S +++G VV AGCV+QA E L+ +V V Q R+ E++E Sbjct: 113 GAI----DSGLRQGKK--VVAAGCVSQATPNVEYLKGLSVVGV----QQTDRIVEVVEET 162 Query: 144 RFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G R++ + K ++ R+ + + I GC CT+C + RG Sbjct: 163 LKGNSVRLLGSKKDGRRKAGGAALTLPKI-RRNPLVEIIAINTGCLNHCTYCKTKHARGD 221 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK--- 258 S S+ ++V A++ GV EI L ++ A+ G+ + GE T DLL + + Sbjct: 222 LGSYSIEELVARAKQAFQEGVREIWLTSEDTGAY-GRDI-GE--TLPDLLREMVAVVPEG 277 Query: 259 -----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 G+ Y + DM++ L + +LH+PVQSGSD +L M R +TA Sbjct: 278 CMLRLGMTNPPYILDYLEDMAEILSHPR-----VYSFLHVPVQSGSDPVLAEMKREYTAA 332 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 ++R +ID +R P I I++D I GFP ET++DF TM LV + + F ++ PR GT Sbjct: 333 QFRIVIDFLRKAVPGITIATDIICGFPTETEEDFEETMALVREYRFPSLFINQFYPRPGT 392 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLRE--QQVSFNDACVGQIIEVLIEKHGKEKGKLVGR 431 P + M +++ +V ER K+L E Q D VGQ VL+ + +K LVG Sbjct: 393 PAAKM-KRIPTHVVKER----TKRLSELFQSYQTYDGRVGQRQAVLVTEVAHDKKHLVGH 447 Query: 432 SPWLQSV 438 + + + V Sbjct: 448 NKFYEQV 454 >gi|193215368|ref|YP_001996567.1| MiaB-like tRNA modifying enzyme YliG [Chloroherpeton thalassium ATCC 35110] gi|238065325|sp|B3QSS3|RIMO_CHLT3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|193088845|gb|ACF14120.1| MiaB-like tRNA modifying enzyme YliG [Chloroherpeton thalassium ATCC 35110] Length = 434 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 124/456 (27%), Positives = 216/456 (47%), Gaps = 40/456 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFL 84 + ++ + GC N+ DS + + +AD I++NTC +K+ E + L Sbjct: 7 KLYLLTLGCSKNMVDSEVLLAQAKANQIYLAEDFHEADTILINTCGFIDKSKQESIDQIL 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 IR + RIK+ V+V GC+++ + + P V+ G + L +++ A Sbjct: 67 EAIRFKEAKRIKK-----VIVFGCLSERYKDALREEIPEVDCYFGTRD---LSQII--AE 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G Y ER + + ++L I EGCD C FC +P RG ++S Sbjct: 117 LGGH-----YKTHLLGERELLTPPYF-------SYLKISEGCDHPCAFCAIPLMRGKQVS 164 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRL 263 R + +++ EA+KL + GV E+ L+ Q+ + G L+G++ ++LL LS+++ +RL Sbjct: 165 RPIDELLLEAKKLKEKGVRELCLIAQDTTYY-GHDLNGKR-QLAELLQRLSDLQFDWIRL 222 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y ++P ++ + + + YL LP+Q SD +LKSM R + + ++I +IR Sbjct: 223 LY--AYPAMFPTDILPVMRERENICKYLDLPLQHVSDEMLKSMRRGISKRKTTELIAQIR 280 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S P I + + +VG+P ET++ F ++ V + + + F YS GT + + + Sbjct: 281 SEVPGIRLRTTMLVGYPNETEEQFSELVEFVRETQFDRLGCFAYSHEEGTEAHELPDTLT 340 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS- 442 E K R+ L E + N A VG + VLIE+ E +GR+ + V N Sbjct: 341 EEEKERRVELLMAAQEEIAYAKNQALVGSFMPVLIERF--EANFAIGRTEYDAPEVDNEV 398 Query: 443 ---------KNHNIGDIIKVRITDVKISTLYGELVV 469 K +G + RITD + L+G LV+ Sbjct: 399 VIALDEAEQKKVKVGTFYQARITDAEAFDLFGSLVL 434 >gi|332296067|ref|YP_004437990.1| Ribosomal protein S12 methylthiotransferase rimO [Thermodesulfobium narugense DSM 14796] gi|332179170|gb|AEE14859.1| Ribosomal protein S12 methylthiotransferase rimO [Thermodesulfobium narugense DSM 14796] Length = 437 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 126/450 (28%), Positives = 209/450 (46%), Gaps = 36/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRIRN 89 S GC N D + F + ++ AD +++NTC IR+ E + + L I N Sbjct: 11 SLGCPKNEVDLQYLLGKFETYNCFLTFDLNVADYVLINTCSFIRKAKQEAISTILDLIEN 70 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 KN + K ++V GC+ E ++ P VN + P FGK + Sbjct: 71 KKNFKYK------IIVGGCLVSLYKESLIELFPEVNAFLEPG-----------KSFGKEI 113 Query: 150 VD--TDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + + FE + NR+ + +L I +GC + C++C++P RG S Sbjct: 114 FEYLDKNEIYNNFEN-EFCNDNENRRFFIERPYEYLKIADGCSRKCSYCLIPKIRGPYYS 172 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 ++++A+ L G EI L+ Q+V + GLD + F LL L I+ + +R Sbjct: 173 YDRKFLLEQAKDLALKGKREIILVAQDVTYY---GLDRKDSLFK-LLEGLEAIEEIKWIR 228 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P ++ +IK + ++PY +P+Q S+++L+ M R + ++ ++ID IR Sbjct: 229 LMYLYPDLLNKDIIKFVSESRKVLPYFDIPMQHASEKVLRYMRRNPDSEKFLRLIDSIRE 288 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 PD I S FIVG PGE + +F ++ ++KI A F YS T +M QV Sbjct: 289 NIPDSVIRSTFIVGHPGEDEKEFDKLVNFLEKIKLNWAGFFSYSREEDTLSYSMDNQVKY 348 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV- 439 K RL +Q + + + + VG+ EVL+E + VGRS P + S + Sbjct: 349 VEKKNRLKIIQSIQQNITLKWRQSLVGKSFEVLVENDLNKYN--VGRSFMEAPDIDSFIR 406 Query: 440 -LNSKNHNIGDIIKVRITDVKISTLYGELV 468 S+ IGD +++ IT K L GEL+ Sbjct: 407 FRGSEKVEIGDFVRILITKNKGFKLEGELI 436 >gi|305667743|ref|YP_003864030.1| putative Fe-S oxidoreductase [Maribacter sp. HTCC2170] gi|88707580|gb|EAQ99822.1| putative Fe-S oxidoreductase [Maribacter sp. HTCC2170] Length = 405 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 124/422 (29%), Positives = 204/422 (48%), Gaps = 44/422 (10%) Query: 60 DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL-LVVVAGCVAQAEGEEIL 118 ++ +++V+NTC + A E+ + + L+ KE G++ V V GC+++ ++ Sbjct: 15 EEGNVVVINTCGFIDNAKEESVNTI-----LQFVEKKEAGEVDKVFVTGCLSERYKPDLQ 69 Query: 119 RRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTA 178 + P V+ G LP LL + + DY E ERL+ Y A Sbjct: 70 KEIPNVDEYFGTS---ELPNLL-------KALGADYKHELIGERLTTTPKNY-------A 112 Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238 +L I EGCD+ C+FC +P RG S+ + ++V E++KL GV E+ L+ Q++ + Sbjct: 113 YLKIAEGCDRPCSFCAIPLMRGKHKSKPIEELVTESKKLAAKGVKELILIAQDLTYY--- 169 Query: 239 GLD-GEKCTFSDLLYSLSEIKGL--VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHL 293 GLD +K + LL L ++ G+ +RL Y T P D+ D + D + YL + Sbjct: 170 GLDLYKKRNLAVLLQKLVKVDGIEWIRLHYAFPTGFPMDVLDVM----NDEPKICNYLDI 225 Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 P+Q SD ILKSM R T + ++I R+ P +AI + IVG+PGET+ F+ Sbjct: 226 PLQHISDDILKSMRRGTTQEKTTRLIQEFRNHVPSMAIRTTLIVGYPGETEAHFQNLKKW 285 Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413 V ++ + + F YS T N+++ V + VK ER + + + N +G+ Sbjct: 286 VGEMRFERLGCFTYSHEENTHAYNLVDDVPQEVKQERANEIMELQSQISWELNQEKIGKT 345 Query: 414 IEVLIEKHGKEKGKLVGR----SPWLQSVVLNSKNH---NIGDIIKVRITDVKISTLYGE 466 +I++ KE VGR SP + + VL G+ +++I D LYGE Sbjct: 346 FNCIIDR--KEGNHFVGRTEFDSPDVDNEVLIDAAKFYLKQGEFAQIKIVDAADFDLYGE 403 Query: 467 LV 468 V Sbjct: 404 PV 405 >gi|257791396|ref|YP_003182002.1| MiaB-like tRNA modifying enzyme [Eggerthella lenta DSM 2243] gi|257475293|gb|ACV55613.1| MiaB-like tRNA modifying enzyme [Eggerthella lenta DSM 2243] Length = 410 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 121/413 (29%), Positives = 188/413 (45%), Gaps = 48/413 (11%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F V + GC++N +S +G E S ADLIV+NTC + +A +K + R Sbjct: 3 FAVVNLGCKVNRVESDDAAARLALRGVE--TSEASADLIVVNTCTVTGEAEKKTRKAVRR 60 Query: 87 -IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +R ++R V+V GC A + V+VV Q + L + A F Sbjct: 61 ALRANDHAR--------VLVTGCAAAIDAAFYEALDERVSVVGKAQLAQAIDALFDEAPF 112 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 D + + G+ + GV +Q+GCD CT+C+V RG SR Sbjct: 113 SP---GEDAPLH--------IGSGFRTRVGVK----VQDGCDNACTYCIVHVARGRATSR 157 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL--------------- 250 VV E G EI L G N+ ++ DG + S + Sbjct: 158 PADDVVRECASYARAGAREIVLTGINLGSY----CDGGRRDPSAIRLAALLRRLLDETAD 213 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRR 309 L++ E R R ++ PRD+ D LI D + +LHLP+Q+GS ++L+ M R Sbjct: 214 LHAPGEAPA--RFRVSSIEPRDVDDALIDLLASADGRVCRHLHLPLQAGSSKVLREMARP 271 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + A + +++R+ P +A+S+D I GFPGETD +F+ T+D+ +A+ +F YSP Sbjct: 272 YDAERFVALVERLYRRIPQLALSTDIIAGFPGETDAEFQETLDVARACRFAKIHAFPYSP 331 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 R+GTP + +QV VK R L+ E + S G + L+E+ G Sbjct: 332 RIGTPAAERADQVPPAVKEARAAMLRALGDELRASERARRAGTVELALVEEGG 384 >gi|149915897|ref|ZP_01904421.1| RNA modification enzyme, MiaB-family, putative [Roseobacter sp. AzwK-3b] gi|149810220|gb|EDM70066.1| RNA modification enzyme, MiaB-family, putative [Roseobacter sp. AzwK-3b] Length = 459 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 124/453 (27%), Positives = 205/453 (45%), Gaps = 41/453 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 32 SLGCPKALVDSERILTRLRAEGYGISPDYSGADAVIVNTCGFLDSAKAESLEAIGEALA- 90 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ AE + I P V V GP Y ++V+ Sbjct: 91 ENGR--------VIVTGCLG-AEPDYITGVHPRVLAVTGPHQY-------------EQVL 128 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D ++ D F L G R + +L I EGC+ C FC++P RG SR Sbjct: 129 DAVHAAVPPSPDPFVDLLPASGVKLTPRHYS-YLKISEGCNHKCKFCIIPDMRGKLSSRP 187 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 V+ EA+KL++NGV E+ ++ Q+ +A+ + +G + +DL L + VR Sbjct: 188 AHAVIREAQKLVENGVRELLIISQDTSAYGVDIKHAEANGHRAHITDLARDLGRLGAWVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + + A G +++PYL +P Q L+ M R A I Sbjct: 248 LHYVYPYPHVRNLIPLMAEG---LVLPYLDIPFQHAHPETLRRMARPAAAARTLDEIAAW 304 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RS PDI + S FIVG+PGET+ +F+ +D +D+ + FKY G + + + V Sbjct: 305 RSDCPDITLRSTFIVGYPGETEQEFQTLLDWLDEAQLDRVGCFKYENVAGARSNALPDHV 364 Query: 383 DENVKAERLLCLQKK---LREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 E VK +R +K + E +++ V Q+I I++ G + G +P + + Sbjct: 365 PEEVKQDRWDRFMEKAQAISEAKLAAKVGSVQQVIVDDIDEDGIATCRTKGDAPEIDGCL 424 Query: 440 L---NSKNHNIGDIIKVRITDVKISTLYGELVV 469 ++ ++GDI+ V + + L+G L + Sbjct: 425 FIDERTEGLSVGDIVTVEVDEAGDYDLWGSLTL 457 >gi|193084232|gb|ACF09895.1| MiaB-like tRNA modifying enzyme [uncultured marine crenarchaeote AD1000-23-H12] Length = 422 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 123/448 (27%), Positives = 217/448 (48%), Gaps = 32/448 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + V+SYGC N+ D+ + + +GY +N+ D+DL V+ TC +++ K+ + Sbjct: 2 KVHVESYGCSANIADAEMISGLLSQKGYNVLNNDPDSDLNVIVTCTVKDPTFNKM---VK 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI++L ++ G L ++AGC+ + E ++IL+ + +++ P + + + + A Sbjct: 59 RIKSLSST----GKPL--IIAGCMPKTELDKILQINDQASLL-DPGSVHLAVDAAKAALA 111 Query: 146 GKRVVDTDYSVEDK--FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G++ +K RL R V + +GC CTFC V + RG + Sbjct: 112 GEKFESISSKRSNKVLLPRL--------RSNPVVHIAEVSQGCLSKCTFCQVKFARGGLV 163 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S +V E + + +G EI L Q++ + GK + K + +LL + +I G + Sbjct: 164 SYRPLDIVREIEQAVIDGCREIWLTSQDIGCY-GKDI---KTSLPELLNIICDIDGDFMV 219 Query: 264 RYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R +P + D LI ++ D + +LH+PVQSGSD ILK M R H+ ++ + Sbjct: 220 RVGMMNPMHLDEIIDDLITSYMDPKIFK-FLHIPVQSGSDEILKLMKRMHSVNDFELTVK 278 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + R+ P+I++S+D IVGFP ETD F+ T+DLV +I + ++ R GT + Sbjct: 279 KFRNAFPNISLSTDIIVGFPDETDLQFQETLDLVRRINFDTVNISRFGSRPGTEAYSK-P 337 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 + + ER + + S N VG + I K+ K V R+P + V+L Sbjct: 338 ILPHKIVKERSKLMHTVAKSTSHSRNKIWVGWKGKSTIVKNVKNAQ--VARNPSYKPVIL 395 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + N +G + I + + L G L+ Sbjct: 396 KT-NLPLGSSVNTEIVNYSANCLVGTLI 422 >gi|304382716|ref|ZP_07365208.1| RNA modification enzyme [Prevotella marshii DSM 16973] gi|304336167|gb|EFM02411.1| RNA modification enzyme [Prevotella marshii DSM 16973] Length = 433 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 130/463 (28%), Positives = 216/463 (46%), Gaps = 53/463 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK-VYS 82 R + + GC N+ DS + F + GY V+ + ++ V+NTC E A E+ + + Sbjct: 5 RIDIVTMGCSKNLVDSEILMKQFEANGYHCVHDAEHPQGEIAVINTCGFIESAKEESINT 64 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L ++ K R+ + + V GC++Q +E+ P V+ G Y +L L + Sbjct: 65 ILEFVQAKKEGRLNK-----LFVMGCLSQRYKDELEAEIPQVDKFYGKFNYKQLLTDLGK 119 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPY 197 A DG +R +T A+L I EGCD+ C +C +P Sbjct: 120 AEAAS------------------CDG----RRHLTTPRHYAYLKISEGCDRHCAYCAIPL 157 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 G +SR ++ +V+E +L+ GV E ++ Q + + G +DG ++L+ +S++ Sbjct: 158 MTGRHVSRPMNDIVNEVEELVSIGVKEFQVIAQELTYY-GMDIDGH-LHIAELIRRISDV 215 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +G+ +R ++P L+ + D + YL + +Q SD +L M R + E + Sbjct: 216 QGVKWIRLHYAYPNQFPYELLDVIRERDNVCKYLDIALQHISDSMLTRMRRHVSKEETLR 275 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGS 376 +I IR P I + + +VGFPGETD+DF MD V + + +F YS GT + Sbjct: 276 LIRDIRRQVPGIHLRTTLMVGFPGETDEDFEELMDFVRWARFERMGAFAYSEEEGTYSAT 335 Query: 377 NMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR-- 431 + + V VK + RL+ LQ+K+ VG ++V+I++ KE VGR Sbjct: 336 HYPDDVSPQVKEDRLNRLMALQQKI---SAEVEAEKVGCTLQVIIDR--KEGDFYVGRTE 390 Query: 432 --SPWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGELVV 469 SP + VL S K IGD V++ LYGE+V Sbjct: 391 FCSPEVDPEVLISAGEKRLKIGDFYAVKMRAADEFDLYGEVVT 433 >gi|86742221|ref|YP_482621.1| hypothetical protein Francci3_3540 [Frankia sp. CcI3] gi|123737129|sp|Q2J750|RIMO_FRASC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|86569083|gb|ABD12892.1| SSU ribosomal protein S12P methylthiotransferase [Frankia sp. CcI3] Length = 523 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 113/422 (26%), Positives = 184/422 (43%), Gaps = 30/422 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + + GC N DS + + G+E V+ DAD +++NTC + A + L Sbjct: 7 RRVALITLGCSRNEVDSEELAARLGADGWELVSDAADADAVLVNTCGFVDAAKKDSIDAL 66 Query: 85 GRIRNLKNSRIKEG-------GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 L+ G G VV GC+A+ G E+ P + V+G Y + Sbjct: 67 LAADGLRAGGGPSGPADGAGPGPRAVVAVGCLAERYGTELAESLPEADAVLGFDAYPNIA 126 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVD---------------GGYNRKR----GVTA 178 L G V +S D+ L I G +R G A Sbjct: 127 THLAAVLAGTPV--PAHSPRDRRTMLPITPVDRAAPALPPAAVSTGAVPLRRRLTAGPVA 184 Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238 L I GCD+ C FC +P RG +SRS V+ EA L G E+ L+ +N ++ GK Sbjct: 185 VLKISSGCDRRCAFCAIPSFRGSHVSRSPDDVLAEAEWLAGQGARELVLVSENSTSY-GK 243 Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 L G+ LL L+ + G+VR+R P +M L++ L PYL L Q Sbjct: 244 DL-GDLRALEKLLPQLAAVSGIVRVRTVYLQPAEMRPSLLEVLLTTPGLAPYLDLSFQHA 302 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 S +L+ M R + + ++ R R++ P++ S+ IVGFPGET +D + ++ Sbjct: 303 SPPVLRRMRRFGGSGHFLDLLARARALAPELGARSNVIVGFPGETPEDVDILAEFLEAAE 362 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 F YS GT + + +++ + + R + + + + + DA +G ++VL+ Sbjct: 363 LDAVGVFGYSDEEGTEAAGLTDKIPDELIERRRVRVTDLVEQLTAARADARIGSRVQVLV 422 Query: 419 EK 420 E+ Sbjct: 423 EE 424 >gi|94986752|ref|YP_594685.1| 2-methylthioadenine synthetase [Lawsonia intracellularis PHE/MN1-00] gi|94731001|emb|CAJ54364.1| 2-methylthioadenine synthetase [Lawsonia intracellularis PHE/MN1-00] Length = 436 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 109/413 (26%), Positives = 197/413 (47%), Gaps = 29/413 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P F + ++GC++N Y+S + + + + E V + AD+I+LNTC I A Sbjct: 4 TPWTFSIVTFGCKVNQYESQSIREAWSNLHGEEVATPQTADIILLNTCAITANA------ 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + R L N +E + +++ GC E L + P V + + +L L Sbjct: 58 -ITDARQLINKLHREAPNSKIILTGCATDLTNEA-LYKLPGVYTFISQKNKTQLLSNLPL 115 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + + T+ + F + SI + +NR R + + +Q+GC CT+C++P TRG Sbjct: 116 TQLNQDQLQTN---TNTFPQFSISN--FNRSRPI---VKVQDGCSHSCTYCIIPSTRGKP 167 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEI-KG 259 SRS + + E ++L++ G EI L G N+ + +G +S L LS KG Sbjct: 168 KSRSPKECLIEIQQLLNAGFREIILSGINLRQYTATQQGCKDFWELYSFLDKKLSPTWKG 227 Query: 260 LVRLRYTTSHPRDMS----DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 + RLR ++ P ++ D L +H LHL +QSGS ILK M+R H +Y Sbjct: 228 IARLRISSLDPAQLTQRGLDILSNSHMGCQ----QLHLSIQSGSAEILKKMHRSHYTPQY 283 Query: 316 -RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 ++ ++ + +DFI+GFPGET+ F+ T+DL+ ++ F +S R T Sbjct: 284 LLDTTKKLSTIWHKFGLGADFIIGFPGETEKHFQETVDLIKELPLTYGHIFPFSARPNTI 343 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG-QIIEVLIEKHGKEKG 426 + + + ++ +R +++ + +++ F+ + + + E GK G Sbjct: 344 AATLPNHIKKSESQQRAATIRQLITQKEKIFHKQLLTMSTLHIAPEGGGKTGG 396 >gi|224024935|ref|ZP_03643301.1| hypothetical protein BACCOPRO_01666 [Bacteroides coprophilus DSM 18228] gi|224018171|gb|EEF76169.1| hypothetical protein BACCOPRO_01666 [Bacteroides coprophilus DSM 18228] Length = 432 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 121/450 (26%), Positives = 209/450 (46%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ + GY+ + D ++ V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEKLMKQLEANGYKVTHDSDHPQGEIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ + KE G L + V GC+++ +E+ P V+ G + L L ++ Sbjct: 66 -LEFCQAKEEGRLKKLFVMGCLSERYLQELTGEIPQVDKFYGKFNWNDLLNDLGKS---- 120 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER Y A+L I EGCD+ C++C +P G +SR + Sbjct: 121 ------YHSEFAIERHLTTPSHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE R L+ GV E ++ Q + + G+D +K +L+ ++EI G+ +R Sbjct: 168 EEILDEVRLLVSQGVKEFQVIAQELTYY---GVDLYKKQMLPELIEKMAEIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P + L + + D + Y+ + +Q SD +L+ M R + E ++I+R R Sbjct: 225 YAYPAAFPEDLFRVMREHDNVCKYMDIALQHISDNMLQKMRRHVSKAETYRLIERFREEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385 P I + + +VG PGET++DF + V K + + +F YS GT N + + E Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEELKEFVRKARFDRMGAFAYSEEEGTYSAQNYSDDIPEE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440 VK RL L +E A +G+ +V+I++ KE +GR SP + VL Sbjct: 345 VKHRRLDELMAVQQEISADLTHAKIGKEFKVIIDR--KEGDYFIGRTEFDSPEVDPEVLI 402 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468 +N IG +V++ D LY L+ Sbjct: 403 KDEGQNLVIGSFYQVKVYDADDFDLYATLI 432 >gi|83952788|ref|ZP_00961518.1| RNA modification enzyme, MiaB family protein [Roseovarius nubinhibens ISM] gi|83835923|gb|EAP75222.1| RNA modification enzyme, MiaB family protein [Roseovarius nubinhibens ISM] Length = 482 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 127/455 (27%), Positives = 205/455 (45%), Gaps = 49/455 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 58 SLGCPKALVDSERILTRLRAEGYGISPDYSGADAVIVNTCGFLDSAKAESLEAIGEA--- 114 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ AE + I P V V GP Y ++V+ Sbjct: 115 ----LKENG--RVIVTGCLG-AEPDYITGVHPKVLAVTGPHQY-------------EQVL 154 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D + D F L R + +L I EGC+ C FC++P RG SR Sbjct: 155 DAVHGAVPPSPDPFVDLLPASSVKLTPRHYS-YLKISEGCNHKCKFCIIPDMRGRLASRP 213 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKG 259 V+ EA KL++NGV E+ ++ Q+ +A+ G+D G + +DL L + Sbjct: 214 AFAVMREAEKLVENGVRELLVISQDTSAY---GVDIKHAEDRGHRAHITDLARDLGSLGA 270 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQI 318 VRL Y +P + A G +++PYL +P Q +LK M R HT+ +I Sbjct: 271 WVRLHYVYPYPHVRQLIPLMAEG---LVLPYLDIPFQHSHPDVLKRMARPAHTSKTLTEI 327 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 R + PDI + S FIVG+PGET+ +F+ +D +D+ + FKY G +++ Sbjct: 328 A-AWRDICPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYENVDGARSNDL 386 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVGRSPWL 435 + V E VK ER +K + + A VG + EV+ I+ G + +P + Sbjct: 387 PDHVAEEVKQERWERFMEKAQAISEAKLAAKVGSVQEVIVDDIDADGIATCRTKADAPEI 446 Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGEL 467 + ++ ++GD++ V + + L+G L Sbjct: 447 DGNLFIDEGTEGLSVGDLVSVTVDEAGEYDLWGRL 481 >gi|317125300|ref|YP_004099412.1| 30S ribosomal protein S12P methylthiotransferase [Intrasporangium calvum DSM 43043] gi|315589388|gb|ADU48685.1| SSU ribosomal protein S12P methylthiotransferase [Intrasporangium calvum DSM 43043] Length = 489 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 117/436 (26%), Positives = 198/436 (45%), Gaps = 40/436 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N DS + ++G+ V +AD+ V+NTC E+A + L +L Sbjct: 16 TLGCTRNEVDSEELAGRLQAEGWTLVEDAAEADVAVVNTCGFVEQAKKDSIDALLEASDL 75 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K +G VV GC+A+ G+++ + P + V+G +Y + L+ G V Sbjct: 76 K----ADGRTRAVVAVGCLAERYGKDLAEQLPEADAVLGFDSYQDMSSHLQTILGGGHVP 131 Query: 151 D------------TDYSVEDKFERLSIVDGG-----YNRKRGVT---------------- 177 T + + R+++ G Y G Sbjct: 132 SHTPGDRRRLLPLTPSARPAEAVRVALPGHGDHPEPYAAGPGPAPASGPRVVRARLDGRP 191 Query: 178 -AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236 A L I GCD+ C+FC +P RG +SR + V+ EAR L GV E+ L+ +N ++ Sbjct: 192 WAPLKIASGCDRRCSFCAIPMFRGAFVSRRPADVIAEARWLAGQGVKELFLVSENSTSY- 250 Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 GK L G+ LL L+ ++G+ R+R + P ++ L+ A ++PY + Q Sbjct: 251 GKDL-GDLGLLEKLLPELTAVEGIERVRVSYLQPAEIRPGLLDAMAGTPGVVPYYDISFQ 309 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 S+ +L+ M R + + ++ R+R+ P+ I + IVGFPGET+ D + + Sbjct: 310 HASEPVLRRMRRFGSRAAFLDLVARVRASAPEAGIRCNVIVGFPGETEADVAELEAFLTE 369 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416 F YS GT E+V +V A+RL L + + E + +G ++EV Sbjct: 370 ARLDVVGVFGYSDEDGTEAEGHGEKVAADVIADRLERLTRLVEELTAQRAEERIGDLVEV 429 Query: 417 LIEKHGKEKGKLVGRS 432 L+E+ ++ G+LVGR+ Sbjct: 430 LVEEIDEDDGRLVGRA 445 >gi|297191680|ref|ZP_06909078.1| radical SAM superfamily protein [Streptomyces pristinaespiralis ATCC 25486] gi|197721614|gb|EDY65522.1| radical SAM superfamily protein [Streptomyces pristinaespiralis ATCC 25486] Length = 498 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 128/447 (28%), Positives = 197/447 (44%), Gaps = 44/447 (9%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G+E V DAD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLAADGWELVEDASDADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 L +LK+ G VV GC+A+ G+++ P + V+G Y + + L Sbjct: 61 VDALLEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116 Query: 141 ERARFG--------------------KRVVDTDYSV----------EDKFERLSIVDGG- 169 + G +R TD ++ ED E ++ G Sbjct: 117 QTILSGGVHASHTPRDRRKLLPLSPVERQQATDVALPGHGDVAPAPEDLPEGIAPESGPR 176 Query: 170 --YNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225 R+ G + A + + GCD+ C+FC +P RG ISR S V+ E R L + GV EI Sbjct: 177 APLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEI 236 Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285 L+ +N N GK L G+ LL L+ + G+ R+R + P +M LI Sbjct: 237 MLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLIDVLTSTP 294 Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345 + PY L Q + +L++M R + ++++ IR P + S+FIVGFPGET+ Sbjct: 295 KVAPYFDLSFQHSAPGVLRAMRRFGDTERFLELLETIRGKAPQAGVRSNFIVGFPGETEA 354 Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405 DF + F YS GT ++D +V AERL + + E Sbjct: 355 DFAELERFISAARLDAVGVFGYSDEEGTEAVTYDGKLDADVIAERLEHMSRIADELTAQR 414 Query: 406 NDACVGQIIEVLIEKHGKEKGKLVGRS 432 + +G+ +EVL+E E G VGR+ Sbjct: 415 AEERLGETLEVLVESVDDEDGA-VGRA 440 >gi|283780184|ref|YP_003370939.1| MiaB-like tRNA modifying enzyme [Pirellula staleyi DSM 6068] gi|283438637|gb|ADB17079.1| MiaB-like tRNA modifying enzyme [Pirellula staleyi DSM 6068] Length = 435 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 122/399 (30%), Positives = 204/399 (51%), Gaps = 42/399 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV-YSFLGRIRN 89 + GC++N Y++ + + GY + A L V+NTC + K Y+ IR Sbjct: 9 TLGCKVNQYETELVREGLVRFGYHDAVEDEQAQLCVVNTCTVTSDGDSKSRYT----IRK 64 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 L +E D +VV GC A +E+L+ +V VV + LP++L+R +G V Sbjct: 65 LA----RENPDSRIVVMGCYATRAPDELLKLPNVVEVVTDKR---ELPDVLQR--YG--V 113 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 +D + +F G +R A++ +Q+GC C++C++P R SR L Sbjct: 114 IDLPSGI-SRF-------GTRHR-----AYVKVQDGCLLRCSYCIIPQVRPHVSSRPLQH 160 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-----CTFSDLLYSLSEIKGLVRLR 264 +V+E ++L+ NG E+ L G ++ + G + K S LL L ++ G RLR Sbjct: 161 IVEEVQRLVANGYREVVLTGVHLGHY-GVESNWNKPKEAWLRLSTLLRELVKLPGDFRLR 219 Query: 265 YTTSHPRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 ++ +++ LI D + P+LHL +QSGSD +L+ M RR ++ + IDR + Sbjct: 220 LSSIEATEVTRELISVMADNRQRIAPHLHLCLQSGSDSVLRRMRRRWSSRMF---IDRCQ 276 Query: 324 SVRPDI---AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R + AI++D IVGFPGET+ +F AT++ +++ F YS R GTP + M Sbjct: 277 MLRDALDAPAITTDIIVGFPGETEAEFEATLETARASAFSKIHIFPYSARKGTPAAEMPG 336 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 Q+ VK ER L + ++ Q + + VG+ +E+L+E Sbjct: 337 QISFEVKTERSARLAELEKQMQREYLASLVGKPLELLVE 375 >gi|220904669|ref|YP_002479981.1| MiaB family RNA modification protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868968|gb|ACL49303.1| RNA modification enzyme, MiaB family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 506 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 111/435 (25%), Positives = 192/435 (44%), Gaps = 71/435 (16%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF+ ++GC++N Y++ + + + G +S +AD+I +N+C I K + + R Sbjct: 6 FFLVTFGCKVNQYETQSLREAWQGLGGVECSSPAEADVICVNSCAITAKGERDARNAVFR 65 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQ---------------------AEGEEILRRSPIVN 125 +R +E D +++ GC A+ E +++L + P + Sbjct: 66 LR-------REAPDARLILTGCAARLFADYRPRPGAAWAAPDLLVPQEHKDLLLQGPWSS 118 Query: 126 VVVGPQ--------------------------TYYR---LPELLERARFGKRVVDTDYSV 156 GP T +R P+ E DT+ Sbjct: 119 DFAGPDSCATASATLPAQHEKMPSPSGSAPLFTPFREVNRPQKAEEHASTTMNADTNADA 178 Query: 157 EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK 216 + F +I + R R V L +Q+GC CT+C+VP TRG SR + V+ EAR+ Sbjct: 179 ANSFPSFNIST--FKRARPV---LKVQDGCAHRCTYCIVPLTRGKPRSRPVEHVLAEARR 233 Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-----SEIKGLVRLRYTTSHPR 271 L+++G EI + G N+ + G D + F +LL +L E GL R R ++ P Sbjct: 234 LLESGHVEIMISGINLGQY---GRDAQTGDFWNLLRTLDTALAPEFAGLARFRISSLEPG 290 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIA 330 + + + +L P+LH+ +Q GS +LK M R H + + + + + P + Sbjct: 291 QLDERALDILRHCRMLCPHLHISLQHGSRNVLKRMGRGHYSPAMLEEAVRELSAHWPAMG 350 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 + +D I GFPGET+ D + ++LV ++ A F YS R GT Q+ +K ER Sbjct: 351 LGADIIAGFPGETEKDVQELLELVARLPLGYAHVFPYSRRPGTAAERFEGQIPHALKLER 410 Query: 391 LLCLQKKLREQQVSF 405 +++ + +Q F Sbjct: 411 AARVRQAVALKQKEF 425 >gi|332185879|ref|ZP_08387626.1| RNA modification enzyme, MiaB family protein [Sphingomonas sp. S17] gi|332014237|gb|EGI56295.1| RNA modification enzyme, MiaB family protein [Sphingomonas sp. S17] Length = 414 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 126/444 (28%), Positives = 208/444 (46%), Gaps = 46/444 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC++N+ +S + + + G E D++V+N+C + +A ++ + Sbjct: 11 SLGCRLNIAESETIRAL--AAGRE--------DMVVVNSCAVTNEAVKQTRAA------- 53 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG------PQTYYRLPELLERAR 144 K D +VV GC AQ + P V V+G P+++ +L Sbjct: 54 IRRAAKARPDAQIVVTGCAAQIDPTS-FAAMPEVARVLGNADKLRPESWASTEPML--VA 110 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 RVV+T + F G+ R AF+ +Q GCD CTFC++P RG S Sbjct: 111 DLSRVVETAPHLVSAF-------AGHAR-----AFVEVQNGCDHACTFCIIPTGRGPSRS 158 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 V++ + ++ G E+ L G ++ ++ G L G+ + L+ + L RLR Sbjct: 159 VPAGLVIERIARAVELGHQEVVLTGVDLTSY-GHDLPGQPGLGLLVERILTHVPALPRLR 217 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ ++ D L + +MP+LHL +Q+G+D ILK M RRH+ + I++R+ S Sbjct: 218 LSSLDSIEIDDRLFELVTGEPRVMPHLHLSLQAGNDLILKRMKRRHSRAQSVAIVERMLS 277 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RP+IAI +D I GFP E D T+ L+D A F YS R GTP + M QV Sbjct: 278 ARPEIAIGADLIAGFPTEDDAMAADTLALIDDCRIVHAHIFPYSARDGTPAARM-PQVPH 336 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 ++ ER L++ ++ + A +G +VL+E+ G G +P + + Sbjct: 337 PLRRERAAKLREAAARRRRDWLAAQIGGTRDVLVERPGTR-----GHAPDFADIHFSPAT 391 Query: 445 HNIGDIIKVRITDVKISTLYGELV 468 G I +VR+T + L G+LV Sbjct: 392 EP-GRIARVRVTAATETHLIGQLV 414 >gi|160898308|ref|YP_001563890.1| ribosomal protein S12 methylthiotransferase [Delftia acidovorans SPH-1] gi|238065332|sp|A9BVZ2|RIMO_DELAS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|160363892|gb|ABX35505.1| MiaB-like tRNA modifying enzyme YliG [Delftia acidovorans SPH-1] Length = 471 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 131/483 (27%), Positives = 207/483 (42%), Gaps = 66/483 (13%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS + ++GY+ + + ADL+++NTC + A + Sbjct: 18 APRVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFIDDAVRESLD 76 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPE 138 +G + E G V+V GC+ G++ I P V V GP + Sbjct: 77 TIGEA-------LAENGK--VIVTGCLGAKAGKDGGNLIQEVHPSVLAVTGPHATQEV-- 125 Query: 139 LLERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVT------AFLTIQEGCDKFCT 191 V T D F + +V G + + G+ A+L I EGC+ CT Sbjct: 126 --------MNAVHTHLPKPHDPF--IDLVPGAFG-EAGIKLTPRHYAYLKISEGCNHRCT 174 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGL 240 FC++P RG +SR + V+ EAR L + GV E+ ++ Q+ +A W GK + Sbjct: 175 FCIIPSMRGDLVSRPVGDVLKEARALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPV 234 Query: 241 DGEKCTFSDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 K +L+ +L+EI VRL Y +P A G + +PYL +P Q Sbjct: 235 ---KTRMLELVQTLAEIAEPYGAWVRLHYVYPYPSVDEIIPFMATGRV---LPYLDVPFQ 288 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 +LK M R + + R R + PD+ I S FI GFPGET+ +F + + + Sbjct: 289 HSHPDVLKRMKRPANGERNLERLQRWREICPDLVIRSTFIAGFPGETEQEFEHLLQFLRE 348 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416 +A F YSP G + + + V+ ER E + VGQ ++V Sbjct: 349 AQIDRAGCFAYSPVEGAAANEIPGMLPLEVREERRARFMAVAEEVSTARLQKRVGQTMQV 408 Query: 417 LIEKH-----GKEKGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYG 465 L++K G+ +P + +V SK + +GD +K RI + L G Sbjct: 409 LVDKSVGLGKKGGVGRSYADAPEIDGLVHLLPPEKASKTYKVGDFVKARIVGTQGHDLVG 468 Query: 466 ELV 468 + V Sbjct: 469 QPV 471 >gi|118474280|ref|YP_892031.1| hypothetical protein CFF8240_0856 [Campylobacter fetus subsp. fetus 82-40] gi|118413506|gb|ABK81926.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus 82-40] Length = 413 Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 111/401 (27%), Positives = 203/401 (50%), Gaps = 33/401 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + + K++GC+ N+YD+ ++ + + Y+ N+ ++AD+IV+N+C + A V S++ Sbjct: 2 KIYFKTFGCRTNIYDTELIKS--YIKSYKITNNENEADIIVVNSCTVTNGADSGVRSYIN 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 ++ KNS K VV+ GC A ++GEE+ ++S + V+ G ++ E L Sbjct: 60 QV---KNSGKK------VVLTGCGAVSKGEELFKKSSVFGVL-GASNKSKIDEFLNSQNP 109 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + D ++ DK +IV N + AF+ IQEGC+ C++C++P RG SR Sbjct: 110 FFELGDLNFI--DK----NIVS---NYENHTKAFIKIQEGCNFKCSYCIIPSVRG--KSR 158 Query: 206 SLSQ--VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S+ + +++EA+ L NG EI L G N+ ++ + + + LL L IKG+ R+ Sbjct: 159 SIDEEVILNEAKILASNGYNEIVLTGTNIGSYG----EEKSSSLGKLLQKLGSIKGIKRI 214 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R + P + + + + L +LH+ +Q S +L M RR+ A++ ++ + + Sbjct: 215 RLGSIEPSQIDESFREILQE-SWLEKHLHIALQHTSQTMLDIMRRRNRAFKDIELFNELS 273 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++ A+ SD+IV PGE++ + ++ K +F +SPR GT ++M VD Sbjct: 274 NL--GFALGSDYIVAHPGESEKVWEEGLENFKKFPITHLHAFIFSPRSGTHSASMKIDVD 331 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 V RL L+ F + +L+EK G + Sbjct: 332 GVVAKNRLKILKNIAFVNNFEFRKRNKTN-LNILVEKQGSD 371 >gi|126459773|ref|YP_001056051.1| RNA modification protein [Pyrobaculum calidifontis JCM 11548] gi|126249494|gb|ABO08585.1| RNA modification enzyme, MiaB family [Pyrobaculum calidifontis JCM 11548] Length = 440 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 138/455 (30%), Positives = 213/455 (46%), Gaps = 58/455 (12%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 +V+++GC + D+ E + G V +DAD+I++ TC +RE G + Sbjct: 5 YVEAFGCWLAKADA---EVIRQRLGLVPVARPEDADVILVYTCAVRED---------GEV 52 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 R L R G ++VAGC+A R P + P P +E R Sbjct: 53 RQLARIRELAGLGREMIVAGCLA--------RLRPHTVKSLAPHAELIYPSQVEGGR--- 101 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG---IEIS 204 + + V +FE G+ + +Q GC CTFC YTRG S Sbjct: 102 ---EREMRVLPRFEG------------GLVYVVPLQVGCLGNCTFCATKYTRGGAGYVKS 146 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG---EKCTFSDLLYSL-SEIKGL 260 +V+ +K ++ G EI L GQ+V + G D T DLL L E+ G Sbjct: 147 ADPDEVIRHVKKAVEGGAREIYLTGQDVITY---GFDARWRSGWTLPDLLERLLREVDGE 203 Query: 261 VRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 R+R S P +D ++ + Y HLPVQSGSDR+LK+M RR+T EY++ Sbjct: 204 YRVRIGMSEPWVFERFADQILDIVKRDRRVYRYFHLPVQSGSDRVLKAMGRRYTVDEYKE 263 Query: 318 IIDRIRSVRPD-IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +I +IR V + + I++D IVGFPGE +DF AT+ LV+++ + + ++SPR T + Sbjct: 264 LIRKIRRVLGEPVFIATDIIVGFPGEEWEDFLATVKLVEELQFDKVHVARFSPRPFTEAA 323 Query: 377 NMLEQVDENVKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 M QV + K R L + LR + N A VG VLI + + G +VGR+ Sbjct: 324 VMPRQVPDAEKKRRSKILSEVALRVAHLR-NGARVGSRDVVLITE--VDHGLVVGRAGDY 380 Query: 436 QSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468 + VV+ + +G ++V + LYG+++ Sbjct: 381 RQVVVKRGPGDGLLGQFVEVVVAGAGPVYLYGDVI 415 >gi|83943879|ref|ZP_00956336.1| RNA modification enzyme, MiaB-family protein [Sulfitobacter sp. EE-36] gi|83845126|gb|EAP83006.1| RNA modification enzyme, MiaB-family protein [Sulfitobacter sp. EE-36] Length = 426 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 120/451 (26%), Positives = 206/451 (45%), Gaps = 40/451 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G N Sbjct: 3 SLGCPKALVDSERILTRLRAEGYGVSPDYAGADAVIVNTCGFLDSAKAESLDAIGEALN- 61 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N + V+V GC+ AE + I P + V GP Y E + A G Sbjct: 62 ENGK--------VIVTGCLG-AEPDYIREHHPRILAVTGPHQY----EQVLDAVHGAVPP 108 Query: 151 DTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 D ++ + +S+ Y+ +L I EGC+ C FC++P RG SR Sbjct: 109 SPDPFIDLLPAQAVSLTPRHYS-------YLKISEGCNHKCKFCIIPDMRGRLQSRPAHA 161 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVR 262 ++ EA KL+ NGV E+ ++ Q+ +A+ G+D G + +DL L + VR Sbjct: 162 ILREAEKLVQNGVNELLVISQDTSAY---GVDIKHAEDRGHRAHITDLARDLGSLGAWVR 218 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + + A G +++PYL +P Q +LK M R A + I Sbjct: 219 LHYVYPYPHVRNLIPLMAEG---LVLPYLDIPFQHAHPDVLKRMARPAAAAKTLDEIAAW 275 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PDI + S FIVG+PGET+ +F+ +D +D+ + F+Y G + + + V Sbjct: 276 RDTCPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVDGARSNALPDHV 335 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL 440 + VK +R +K + + +A VG+ ++V+I++ E + +P + + Sbjct: 336 PDEVKQDRWNRFMEKAQAISAAKLEAKVGRRMDVIIDEIDDEAATCRTKADAPEIDGNLF 395 Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELV 468 +N ++G I+ V + + L+G +V Sbjct: 396 IDEGFENLSVGQIVTVEVEEAGEYDLWGRVV 426 >gi|114605654|ref|XP_001171147.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1 isoform 2 [Pan troglodytes] Length = 509 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 115/426 (26%), Positives = 202/426 (47%), Gaps = 35/426 (8%) Query: 53 YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112 ++ + DADL +LN+C ++ A + F I+ + K +V+AGCV QA Sbjct: 22 HQVTENASDADLWLLNSCTVKNPAED---HFRNSIKKAQEENKK------IVLAGCVPQA 72 Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGY 170 + + + ++G Q R+ E++E G V +D RL + +D Sbjct: 73 QPRQDYLKG---LSIIGVQQIDRVVEVVEETIKGHSVRLLGQK-KDNGRRLGGARLDLPK 128 Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 RK + ++I GC CT+C + RG S + ++VD A++ GVCEI L + Sbjct: 129 IRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSE 188 Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHG 282 + A+ G+ + LL+ L E+ G+ Y H +M+ L Sbjct: 189 DTGAY-GRDIG---TNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKIL----- 239 Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342 + + +LH+PVQS SD +L M R + ++++++D ++ P I I++D I GFPGE Sbjct: 240 NHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGE 299 Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402 TD DF+ T+ LV++ + F ++ PR GTP + M EQV VK +R L + Sbjct: 300 TDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKM-EQVPAQVKKQRTKDLSRVF--HS 356 Query: 403 VSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIST 462 S D +G+ +VL+ + + V + + + V++ +G +++V I + Sbjct: 357 YSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHF 416 Query: 463 LYGELV 468 + G+ V Sbjct: 417 MKGQPV 422 >gi|331698386|ref|YP_004334625.1| 30S ribosomal protein S12 methylthiotransferase rimO [Pseudonocardia dioxanivorans CB1190] gi|326953075|gb|AEA26772.1| Ribosomal protein S12 methylthiotransferase rimO [Pseudonocardia dioxanivorans CB1190] Length = 495 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 129/486 (26%), Positives = 207/486 (42%), Gaps = 66/486 (13%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-----DLIVLNTCHIREKAA 77 P+R + + GC N DS + G+E V + + D+IV+NTC E+A Sbjct: 10 APRRAALLTLGCARNEVDSEELAGRLAGSGWELVEADPSSGGPAPDVIVVNTCGFVEQAK 69 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 + L L S + + VV GC+A+ G E+ P + V+G Y L Sbjct: 70 KDSIDTL-----LSASDVAQATGAKVVAVGCLAERYGAELAESLPEADAVLGFDAYPELA 124 Query: 138 E---------------------LLERARFGKRVVDTDYSVE-----DKFERLSIVDGGYN 171 E LL + D SV R+ + DG Sbjct: 125 ERLGEVLGGHAPAPHVPVDRRTLLPLTPVARPTAAADVSVPGHEWVPDLSRVRLSDG--- 181 Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231 A L + GCD+ C FC +P RG +SR + V+ EA L + GV E+ L+ +N Sbjct: 182 ----PVANLKLASGCDRRCAFCAIPSFRGAFVSRPPADVLAEAAWLAEQGVRELVLVSEN 237 Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 ++ GK L G DLL L+ + G+ R+R + P +M L+ + PY Sbjct: 238 STSY-GKDLPGGTRALVDLLPRLAAVPGIERVRASYLQPAEMRPDLVSVIATTPGIAPYF 296 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-- 349 L Q GS +L+ M R ++ ++ +RIR++ P+ I S+ IVGFPGET+DD Sbjct: 297 DLSFQHGSAAVLRRMRRFGGRTDFLELCERIRALAPEAGIRSNVIVGFPGETEDDLAELE 356 Query: 350 ---TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN---VKAERLLCLQKKLREQQV 403 T +D +G F YS GT + ++D + + R+ L +L Q+ Sbjct: 357 AFLTGARLDAVGV-----FGYSDEDGTEAAGYDGKIDPDEVQARVSRISSLVDELVAQRA 411 Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL--QSVVLNSKNHNIGDIIKVRITD 457 VG + VL+E+ + + GR +P + + VV G++++ + D Sbjct: 412 EDR---VGSEVVVLVEQAEDDDFECTGRAAHQAPEVDGECVVERGSGLTAGELVRCVVVD 468 Query: 458 VKISTL 463 + + L Sbjct: 469 TEGADL 474 >gi|269215587|ref|ZP_06159441.1| MiaB tRNA modifying enzyme-like protein [Slackia exigua ATCC 700122] gi|269131074|gb|EEZ62149.1| MiaB tRNA modifying enzyme-like protein [Slackia exigua ATCC 700122] Length = 446 Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 119/442 (26%), Positives = 203/442 (45%), Gaps = 24/442 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N D+ M+ S G+ V+ A +V+NTC + A E+ + L Sbjct: 23 TLGCAKNEVDTADMKRAVVSAGFGVVDDPGQASAVVVNTCSFIQTAIEESIDAILEAAAL 82 Query: 91 KN-SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 N +R GD ++V+GC+ G ++ + V + ++LE + FG + Sbjct: 83 DNVAR----GDAKLIVSGCLPSRFGADLETELEEASAFVPCAGESDIADVLE-SLFGPQP 137 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + D ++ G + A++ I +GCD FC+FC +PY RG S + + Sbjct: 138 -EPDAAL-----------GAHLFDGNAAAYVKIGDGCDHFCSFCSIPYIRGRYRSFTYER 185 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 + + + I GV EITL+ Q+ W G L+G++ T + L+ +L+ R Sbjct: 186 IREAVARQISYGVREITLIAQDTGRW-GCDLEGDR-TLAWLIDALASEFADTWFRVMYLE 243 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P ++D L+ + YL +PVQ S+R+L SM R A + + R I Sbjct: 244 PEGVTDELLDVMASRPNVCRYLDIPVQHASERVLVSMRRSGDARRFLDLFAHARERIEGI 303 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 A+ + I GFPGETD+DF +D +++ F YS GT + M Q+DE K Sbjct: 304 AMRTTVIAGFPGETDEDFSKLLDFLEQADLDYVGVFPYSREDGTRAARMEGQIDEETKLA 363 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLI---EKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 R ++ S + +G +++V++ E+ G+ G+ + ++P + VV Sbjct: 364 RAQEVRDLCDALAFSRVSSRIGDVMDVVVLGREEDGRVYGRAMCQAPEVDGVVY-LDGGT 422 Query: 447 IGDIIKVRITDVKISTLYGELV 468 GD++K RI D + GE+V Sbjct: 423 AGDVVKARIVDTLAYEMEGEIV 444 >gi|299138362|ref|ZP_07031541.1| MiaB-like tRNA modifying enzyme YliG [Acidobacterium sp. MP5ACTX8] gi|298599608|gb|EFI55767.1| MiaB-like tRNA modifying enzyme YliG [Acidobacterium sp. MP5ACTX8] Length = 539 Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 154/278 (55%), Gaps = 17/278 (6%) Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 +A++ I EGCD C+FC++P RG SR L+ +V E + LI GV EITL+GQ+ + Sbjct: 232 ASAYIKIAEGCDHPCSFCIIPQLRGKFRSRPLASIVAETKSLIAQGVREITLIGQDTTCY 291 Query: 236 RGKGLD-----GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290 G+ L G++ +DLL +L+ + GL LR+ ++P ++ L+++ D + Y Sbjct: 292 -GEDLPKDAVTGKRPELADLLDALAPLPGLKWLRFLYAYPNKVTTRLLESIAKHDTVAKY 350 Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350 L +P+Q S +L+ M R T++ + QIID+ RS+ P + + + FIVGFPGET+ DF Sbjct: 351 LDVPLQHASANVLRRMKRGGTSHRFLQIIDKARSIVPGLVLRTSFIVGFPGETEADFEEL 410 Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE-NVKAER--LLCLQKKLREQQVSFND 407 + V + F YS G ++ E+V + ++A R L+ LQ K+ Sbjct: 411 LAFVQEAKIDWLGVFSYSDEEGAGAFSLDEKVPKRTIEARRRKLMKLQNKI---STKARR 467 Query: 408 ACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVVL 440 A VG+ I++L+E +E +G+ + ++P + VL Sbjct: 468 AWVGREIDLLVEGESEETELLWQGRSLDQAPEIDGKVL 505 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 7/108 (6%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYS 82 P+ FV S GC N+ DS M + G E +DA+++V+NTC + A E V + Sbjct: 19 PKVGFV-SLGCPKNLVDSEVMMGLLHRGGAELTPRAEDAEILVVNTCSFIDSAKQESVDT 77 Query: 83 FLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVG 129 L +++ +I GG ++VAGC+ + +EI + P V+ VVG Sbjct: 78 ILEMVQH----KIANGGRAQKLIVAGCLVERYRDEIRKNIPEVDAVVG 121 >gi|198274636|ref|ZP_03207168.1| hypothetical protein BACPLE_00788 [Bacteroides plebeius DSM 17135] gi|198272083|gb|EDY96352.1| hypothetical protein BACPLE_00788 [Bacteroides plebeius DSM 17135] Length = 433 Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 122/450 (27%), Positives = 214/450 (47%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ + GY+ + D ++ V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEKLMKQLEANGYKVTHDSDHPQGEIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ + KE G L + V GC+++ +++ P V+ G + ELL A GK Sbjct: 66 -LEFCQAKEEGRLKKLYVMGCLSERYLKDLQMEIPQVDKFYGK---FNWDELL--ADLGK 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER Y A+L I EGCD+ C++C +P G +SR + Sbjct: 120 A-----YHSEFAIERHLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGKHVSRPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE R L+ GV E ++ Q + + G+D +K +L+ ++ I G+ +R Sbjct: 168 EEILDEVRLLVSEGVKEFQVIAQELTYY---GVDLYKKQMLPELIEQMAHIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P + L + + D + Y+ + +Q SD +L+ M R T E Q+I++ R Sbjct: 225 YAYPAHFPEDLFRVMRENDNVCKYMDIALQHISDNMLQKMRRHVTKAETYQLIEKFRKEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385 P I + + +VG PGET+ DF M+ V + + +F YS GT + +++ + Sbjct: 285 PGIHLRTTLMVGHPGETEQDFEELMEFVRTARFDRMGAFAYSEEEGTYSAKHYKDEIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ-SVVL 440 VK +RL L + +E + +GQ +V+I++ KE +GR SP + V++ Sbjct: 345 VKQQRLDKLMELQQEISADLSHRKIGQEFKVIIDR--KEGDYYIGRTQFDSPEVDPEVLI 402 Query: 441 NSKNH--NIGDIIKVRITDVKISTLYGELV 468 +NH IG +V++ D LY +V Sbjct: 403 KVENHRLRIGSFHRVKVYDADDFDLYATIV 432 >gi|147677217|ref|YP_001211432.1| hypothetical protein PTH_0882 [Pelotomaculum thermopropionicum SI] gi|146273314|dbj|BAF59063.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 310 Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 95/276 (34%), Positives = 149/276 (53%), Gaps = 20/276 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + + GC++N Y+S + +F +GY V D+AD+ ++NTC + K + Sbjct: 4 KRVAIHTLGCKVNQYESASLAGLFLERGYRLVGFDDEADVYIINTCTVTHLGDRKSRQLI 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + L+ V GC AQ EI + P V++V+G + RL +L+E A Sbjct: 64 RRASRTNPA-------ALIAVTGCYAQTSPGEIAK-IPGVDLVIGTRDRARLVDLVETAV 115 Query: 145 FGKRVVDT--DYSVEDKFE--RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 GK + ++ ++FE R V G V AFL IQEGCD FCT+C++PY RG Sbjct: 116 KGKGPLCAVGEHVAGEEFEEVRALPVQGR------VRAFLKIQEGCDNFCTYCIIPYARG 169 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR +V++EAR+L+ +G EI L G A+ G+ L GE T + L+ L+ + GL Sbjct: 170 PMRSRRPERVLEEARELVRSGYKEIVLTGIRTGAY-GRDL-GESLTLAGLMRDLAGVSGL 227 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 +RLR ++ P D++D LI+ L+V +LH+P + Sbjct: 228 LRLRLSSIEPVDITDELIQTMAGLEVFCRHLHVPAE 263 >gi|224135639|ref|XP_002327268.1| predicted protein [Populus trichocarpa] gi|222835638|gb|EEE74073.1| predicted protein [Populus trichocarpa] Length = 612 Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 120/431 (27%), Positives = 208/431 (48%), Gaps = 24/431 (5%) Query: 40 DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99 DS M S GY +S ++ADL ++NTC ++ + + + + + ++ K Sbjct: 59 DSEYMAGQLSSFGYSLSDSPEEADLWLINTCTVKSPSQSAMDTLISKGKSAKKP------ 112 Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK 159 +VVAGCV Q G ++ V++V G Q R+ E++E G V + Sbjct: 113 ---LVVAGCVPQ--GSRNVKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLNR----- 161 Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219 + L +D RK L I GC CT+C + RG S ++ + + +ID Sbjct: 162 -KTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLAGRVKTVID 220 Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK 279 +GV EI L ++ A+ G+ + + + + G LR ++P + + L + Sbjct: 221 DGVKEIWLSSEDTGAY-GRDIGVNLPILLNAIVAELPSDGSTMLRIGMTNPPFILEHLKE 279 Query: 280 AHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337 L + +LH+PVQSGSD IL +MNR +T E+R ++D + + P + I++D I Sbjct: 280 IAEVLRHPCVYSFLHVPVQSGSDAILTAMNREYTVNEFRTVVDTLTELVPGMQIATDIIC 339 Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK 397 GFPGETD DF T++L+ +AQ ++ PR GTP + M ++V N+ +R L Sbjct: 340 GFPGETDKDFSQTVNLIKAYKFAQVHISQFYPRPGTPAARM-KKVPSNIVKQRSREL-TS 397 Query: 398 LREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457 + E +N G++ + I + LVG + V++ ++ +G V+IT Sbjct: 398 VFEAFTPYN-GMEGRVERIWITDIAADGIHLVGHTKAYVQVLIVAQESMLGTSAIVKITS 456 Query: 458 VKISTLYGELV 468 V +++GE++ Sbjct: 457 VGRWSVFGEVI 467 >gi|89069057|ref|ZP_01156438.1| RNA modification enzyme, MiaB-family protein [Oceanicola granulosus HTCC2516] gi|89045426|gb|EAR51491.1| RNA modification enzyme, MiaB-family protein [Oceanicola granulosus HTCC2516] Length = 457 Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 111/368 (30%), Positives = 166/368 (45%), Gaps = 35/368 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 32 SLGCPKALVDSERILTRLRAEGYAISPDYGGADAVIVNTCGFLDSAKAESLDAIGEALT- 90 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ AE E I P V V GP Y ++V+ Sbjct: 91 ENGR--------VIVTGCLG-AEPEYITGAHPRVLAVTGPHQY-------------EQVL 128 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D ++ D F L G R + +L I EGC+ C FC++P RG +SR Sbjct: 129 DAVHAAVPPSPDPFIDLLPASGVSLTPRHFS-YLKISEGCNHRCKFCIIPDMRGRLVSRP 187 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAW----RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +V EA KL+ NGV E+ ++ Q+ +A+ R G + DL L ++ VR Sbjct: 188 AHAIVREAEKLVANGVRELLVISQDTSAYGADIRFAEERGHRAHIDDLARDLGQLGAWVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +PR + + A G +++PYL +P Q LK M R E I Sbjct: 248 LHYVYPYPRVRNLIPLMAEG---LVLPYLDIPFQHAHPDTLKRMARPSAQTETLAEIAAW 304 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R + PDI + S FIVG+PGET+ +F+ +D +D + F+Y G +++ V Sbjct: 305 REICPDITLRSTFIVGYPGETEAEFQYLLDWMDAAQLDRVGCFQYENVAGARSNDLPGHV 364 Query: 383 DENVKAER 390 E VK ER Sbjct: 365 PEEVKQER 372 >gi|290956994|ref|YP_003488176.1| radical SAM protein [Streptomyces scabiei 87.22] gi|260646520|emb|CBG69617.1| putative radical SAM protein [Streptomyces scabiei 87.22] Length = 475 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 125/465 (26%), Positives = 207/465 (44%), Gaps = 42/465 (9%) Query: 40 DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99 DS + + G+E V ++AD+ V+NTC E A + L +LK G Sbjct: 2 DSEELAGRLEADGWELVEDAEEADVAVVNTCGFVEAAKKDSVDALLEANDLKG----HGR 57 Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE------------------ 141 VV GC+A+ G+E+ P + V+G Y + + L+ Sbjct: 58 TQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRLQTILNGGIHASHTPRDRRK 117 Query: 142 --------RARFGKRVVDTDYSVEDKFERLSIVDGGYN--RKR---GVTAFLTIQEGCDK 188 R V ++ D E L+ G + R+R A + + GCD+ Sbjct: 118 LLPISPAQRQESAAEVALPGHAPVDLPEGLAPASGPRSPLRRRLDGSPVASVKLASGCDR 177 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248 C+FC +P RG ISR S V++E R L + GV E+ L+ +N N GK L G+ Sbjct: 178 RCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEVMLVSEN-NTSYGKDL-GDIRLLE 235 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 LL L+E+ G+ R+R + P +M LI ++PY L Q + +L+SM R Sbjct: 236 SLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTPKVVPYFDLSFQHSAPAVLRSMRR 295 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + +++D IR P+ + S+FIVGFPGE++DD ++ F YS Sbjct: 296 FGDTDRFLELLDTIRGKAPEAGVRSNFIVGFPGESEDDLAELERFLNGARLDAIGVFGYS 355 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--- 425 GT + ++ E+V AERL + + E + VGQ + VL+E E+ Sbjct: 356 DEDGTEAATYENKLPEDVVAERLARVSRLAEELVSQRAEERVGQTVRVLVESVDGEEGAY 415 Query: 426 GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRITDVKISTLYGELV 468 G+ ++P VL + + ++G +++ ++ + L E++ Sbjct: 416 GRAAHQAPETDGQVLFTSGEELSVGLMVEAKVVGTEGVDLVAEVL 460 >gi|83953520|ref|ZP_00962242.1| RNA modification enzyme, MiaB-family protein [Sulfitobacter sp. NAS-14.1] gi|83842488|gb|EAP81656.1| RNA modification enzyme, MiaB-family protein [Sulfitobacter sp. NAS-14.1] Length = 456 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 121/451 (26%), Positives = 205/451 (45%), Gaps = 40/451 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G N Sbjct: 33 SLGCPKALVDSERILTRLRAEGYGVSPDYAGADAVIVNTCGFLDSAKAESLDAIGEALN- 91 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 E G V+V GC+ AE + I P + V GP Y E + A G Sbjct: 92 ------ENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQY----EQVLDAVHGAVPP 138 Query: 151 DTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 D ++ + +S+ Y ++L I EGC+ C FC++P RG SR Sbjct: 139 SPDPFIDLLPAQAVSLTPRHY-------SYLKISEGCNHKCKFCIIPDMRGRLQSRPAHA 191 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVR 262 ++ EA KL+ NGV E+ ++ Q+ +A+ G+D G + +DL L + VR Sbjct: 192 ILREAEKLVQNGVNELLVISQDTSAY---GVDIKHAEDRGHRAHITDLARDLGSLGAWVR 248 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + + A G +++PYL +P Q +LK M R A + I Sbjct: 249 LHYVYPYPHVRNLIPLMAEG---LVLPYLDIPFQHAHPDVLKRMARPAAAAKTLDEIAAW 305 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PDI + S FIVG+PGET+ +F+ +D +D+ + F+Y G + + + V Sbjct: 306 RDTCPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVDGARSNALPDHV 365 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL 440 + VK +R +K + + +A VG+ ++V+I++ E + +P + + Sbjct: 366 PDEVKQDRWNRFMEKAQAISAAKLEAKVGRRMDVIIDEIDDEAATCRTKADAPEIDGNLF 425 Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELV 468 +N ++G I+ V + + L+G +V Sbjct: 426 IDEGFENLSVGQIVTVEVEEAGEYDLWGRVV 456 >gi|149186851|ref|ZP_01865161.1| hypothetical protein ED21_25472 [Erythrobacter sp. SD-21] gi|148829518|gb|EDL47959.1| hypothetical protein ED21_25472 [Erythrobacter sp. SD-21] Length = 391 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 108/412 (26%), Positives = 185/412 (44%), Gaps = 49/412 (11%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S GC++N+ +S R+ M + +L+V+N+C + +A + + + R Sbjct: 6 VVSLGCRLNLSESERIRAMLAGED----------NLVVVNSCAVTSEAVRQTRQAIRQAR 55 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 K + ++V GC A E ++ L P V+ + +A+ R Sbjct: 56 -------KANPEARLLVTGCAADIERDQ-LAAMPEVDGFIA-----------NKAKLDPR 96 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + S V + R AF+ +Q GCD CTFCV+P RG S +++ Sbjct: 97 AWNVPASAPP-------VQALHTR-----AFVAVQNGCDHACTFCVIPQGRGKSRSLTVA 144 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V+ E +D G E+ L G +V +W G L G + + L L R+R ++ Sbjct: 145 EVLREVESHLDTGAGEVVLTGVDVTSW-GHDLPGSLRLGALIRAVLDAFPALTRIRMSSI 203 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 ++ + L + +MP++HL +Q G D ILK M RRH + ++ R+++ RPD Sbjct: 204 DGIEVDEELFELFAGEPRVMPHIHLSLQHGHDLILKRMKRRHLRADAVDLVARLKACRPD 263 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + + +D I GFP ET++ + + ++ ++ F YSPR GTP + M QV+ Sbjct: 264 LVVGADLIAGFPTETEEHHASNLSIIRELAILHGHIFPYSPRPGTPAARM-PQVERPTIK 322 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 R L+ ++ + + + V + VL E G G SP V L Sbjct: 323 RRAAELRAEVAKLRAEWLRTLVDKPHSVLAEADG------TGYSPHFARVKL 368 >gi|289582599|ref|YP_003481065.1| MiaB-like tRNA modifying enzyme [Natrialba magadii ATCC 43099] gi|289532152|gb|ADD06503.1| MiaB-like tRNA modifying enzyme [Natrialba magadii ATCC 43099] Length = 417 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 126/449 (28%), Positives = 201/449 (44%), Gaps = 40/449 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ +++YGC N +S +E G+ RV+ D+AD+ +LNTC + EK + L Sbjct: 3 RYHIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTER---NMLR 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R L E DL + GC+A A+GEE + V+ + +PE + Sbjct: 60 RAEELST----ETADLFIT--GCMALAQGEEFAQADVDGQVL----HWDEVPEAVTNGEC 109 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 D + I+D GV L I GC C++C+ G S Sbjct: 110 PTTTPDAE----------PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSP 152 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S+ + V++AR LI G EI + GQ+ + G D + LL + I+G R+R Sbjct: 153 SIEENVEKARALIHAGAKEIRITGQDTGVY---GWDEGERKLHRLLEEICAIEGDFRVRV 209 Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 ++P+ + + L D L +LH PVQSGSD +L M R+H EY ++I+ Sbjct: 210 GMANPKGVHGIREELADVFAANDELYDFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETF 269 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 V +S+DFIVGFP ETD D +M L+ + + ++S R GT + M + + Sbjct: 270 DDVLEYWTLSTDFIVGFPTETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAAEM-KGL 328 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIE-VLIEKHGKEKGKLVGRSPWLQSVVLN 441 VK +R + RE VG+ E VL+ + G + + Q +V N Sbjct: 329 GGQVKKDRSKEMSAAKRELVGEAYAEMVGETREDVLVVEQGTADSVKCRDAAYRQIIVQN 388 Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468 + + + GD + + +T + +G V Sbjct: 389 ASEYGLEPGDFVDLEVTAHETMYAFGTPV 417 >gi|317485886|ref|ZP_07944746.1| MiaB-like tRNA modifying enzyme YliG [Bilophila wadsworthia 3_1_6] gi|316922860|gb|EFV44086.1| MiaB-like tRNA modifying enzyme YliG [Bilophila wadsworthia 3_1_6] Length = 433 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 121/418 (28%), Positives = 199/418 (47%), Gaps = 32/418 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYE--RVNSMDDADLIVLNTCHIREKAAEK-VYS 82 R + S GC N D+ E + S G V S D+A+L+ +NTC + A E+ V + Sbjct: 6 RCYSTSLGCPKNRVDT---ERLLGSLGVALVPVESPDEAELVFINTCAFIQPATEESVRT 62 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGC-VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 I +++ + L+ VAGC V + E++ P V++ + P +L Sbjct: 63 IAQAIADIEELPKRP----LLAVAGCLVGRYHAEDLAPELPEVDLWLDNSDLEAWPAMLA 118 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R ++ + +V + I+ G + A+L I +GC C+FC +P RG Sbjct: 119 R-----KLGLPEPTVPGR-----ILSTGPS-----YAWLKISDGCRHACSFCAIPNIRGG 163 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S +V EAR L+D GV E+ L+ Q++ W G L+G K LL L ++GL Sbjct: 164 HRSHCKDMIVREARALLDQGVKELNLVAQDLTEW-GCDLNG-KQDLRTLLDGLLPLQGLE 221 Query: 262 RLRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR +P M+ ++K + +PY +PVQ +L M R A R+ ID Sbjct: 222 RLRLMYLYPAGMTHEMLKYLREAGKPFVPYFDVPVQHSHPDVLSRMGRPF-ARNPREAID 280 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 RIR+V P+ A+ + +VGFPGET++ F + ++++ + F Y GTP + M + Sbjct: 281 RIRNVFPEAALRTSIMVGFPGETEEHFEHLREFIEEVRFQHLGVFAYRAEEGTPAAAMPD 340 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQS 437 QV++ VK R L + + + G + +L++ H + G GR+ W Q+ Sbjct: 341 QVEDRVKEWRRDLLMEAQADISAEWLSRFEGDRLPILVDAPHPEWPGLHTGRA-WFQA 397 >gi|308801795|ref|XP_003078211.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri] gi|116056662|emb|CAL52951.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri] Length = 558 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 105/361 (29%), Positives = 170/361 (47%), Gaps = 33/361 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + FV ++GC N DS M S GYE V DAD ++NTC ++ + + + L Sbjct: 34 KIFVHTFGCSHNHSDSEFMAGQLQSYGYELVKDASDADGWLVNTCTVKNPSQSAMNTVLE 93 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + + ++VAGCV Q + G + L+ ++ V R+ E +ER Sbjct: 94 R---------GKAANKALLVAGCVPQGDKGAKELKDVSLLGVT----QIDRVVEAMERTL 140 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G DT +E K L +D R+ L + GC CT+C + RG S Sbjct: 141 AG----DTVRMLEKK--TLPRLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGS 194 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 +S +V + I GV E+ L ++ A+ G L + + ++ G V LR Sbjct: 195 YEISALVSRVEQAISEGVSEVWLSSEDTGAY-GIDLGTDVAALFRAITAVLPTDGSVMLR 253 Query: 265 YTTSHPRDMSDCLIKAHGDL-------DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 ++P I AH D + ++H+PVQSGS+ +L++M R +T E+R Sbjct: 254 LGMTNPP-----YILAHLDAVAEAMRHPAVYAWMHIPVQSGSNAVLEAMKREYTVEEFRT 308 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + D + P + I++D I GFPGETD+ +R TM L+++ + + ++ PR GTP + Sbjct: 309 VCDTLLEAVPGMVIATDVICGFPGETDEQWRETMQLIEEYKFPEVHISQFYPRPGTPAAR 368 Query: 378 M 378 M Sbjct: 369 M 369 >gi|21674219|ref|NP_662284.1| hypothetical protein CT1398 [Chlorobium tepidum TLS] gi|81791059|sp|Q8KCL7|RIMO_CHLTE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|21647384|gb|AAM72626.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 434 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 119/423 (28%), Positives = 202/423 (47%), Gaps = 28/423 (6%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGR 86 F+ S GC N DS R+ + G +++D+AD+I++NTC I++ E + L Sbjct: 12 FLLSLGCSKNTVDSERLTAQAVASGLTFTDNVDEADIILINTCGFIKDAKQESIDETLAA 71 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 I + ++E V V GC+ + +E+ P ++ + G + LPE+L A G Sbjct: 72 IGKKEEGVVRE-----VYVMGCLVELYRKELAEEMPEIDGLFGTR---ELPEVL--AAIG 121 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + E+ F+R ++ + AFL I EGC++ C+FC +P RG +S+ Sbjct: 122 AKYR------EELFDRRELLTPPH------YAFLKIAEGCNRRCSFCSIPKIRGPYVSQP 169 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + Q++ EA L GV E+ L+ Q+++ + G L G K +DL LS++ G +R Sbjct: 170 IEQLLREAALLQQQGVKELNLIAQDISVY-GYDLYG-KSALNDLTLRLSDM-GFNWIRLL 226 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P + +I + + Y+ +P+Q +DRILKSM R Q+ID IR Sbjct: 227 YAYPLNFPLEVISTMRERPNVCNYIDMPLQHINDRILKSMQRGIGRKATEQLIDDIRQKN 286 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDI + + I G+PGET +F +D + + + + F Y + + V + Sbjct: 287 PDIRLRTTMIAGYPGETRAEFEELLDFIRQTRFDRLGCFPYRHEEHASAYALEDTVSDEE 346 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 K +R+ L + S N GQ ++VLI++ E+ R+ + V N Sbjct: 347 KEKRVGELMELQEGISASLNRKLEGQTLKVLIDRI--EESVAYARTEYDAPEVDNDVIIE 404 Query: 447 IGD 449 IGD Sbjct: 405 IGD 407 >gi|254460309|ref|ZP_05073725.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacterales bacterium HTCC2083] gi|206676898|gb|EDZ41385.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacteraceae bacterium HTCC2083] gi|297184460|gb|ADI20575.1| hypothetical protein [uncultured alpha proteobacterium EB080_L84F03] Length = 463 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 127/464 (27%), Positives = 206/464 (44%), Gaps = 52/464 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 28 RIGMVSLGCPKALVDSERILTRLRAEGYGISPDYSGADAVIVNTCGFLDSAKAESLDAIG 87 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 ++E G V+V GC+ AE + I P + V GP Y Sbjct: 88 EA-------LQENGK--VIVTGCLG-AEPDYIREHHPKILAVTGPHQY------------ 125 Query: 146 GKRVVDTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 ++V+D +S D F L G R + +L I EGC+ C FC++P RG Sbjct: 126 -EQVLDAVHSAAPPSPDPFVDLLPTSGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGR 183 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGE-KCTFSD 249 SR V+ EA KL+++GV E+ ++ Q+ VN W+ DGE + +D Sbjct: 184 LASRPAHAVLREAEKLVESGVKELLVISQDTSAYGLDRKYDVNPWK----DGEVRSHITD 239 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNR 308 L + ++ VRL Y +P LI D + L+PYL +P Q +LK M R Sbjct: 240 LSREMGKLGAWVRLHYVYPYPSVRE--LIPLMADPESGLLPYLDIPFQHAHPDVLKRMAR 297 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + I R+ PDI + S FIVG+PGET+ +F+ +D +D+ + F+Y Sbjct: 298 PAAGSKTLDEIAAWRATCPDITLRSTFIVGYPGETEQEFQTLLDWMDEAQLDRVGCFQYE 357 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG-- 426 G + + + V VK ER +K + + A VG +EV++++ E Sbjct: 358 NVDGARSNALPDHVPNEVKQERWDRFMEKAQAISEAKLAAKVGTRMEVIVDEIDDEAATC 417 Query: 427 KLVGRSPWLQSVVLNSKNH---NIGDIIKVRITDVKISTLYGEL 467 + +P + + + + N+GDI+ V + + L+G L Sbjct: 418 RTKADAPEIDGNLFIDEGYEGLNVGDIVTVTVDEAGEYDLWGIL 461 >gi|261879949|ref|ZP_06006376.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270333372|gb|EFA44158.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 445 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 116/401 (28%), Positives = 188/401 (46%), Gaps = 22/401 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ M G + AD+ ++NTC + E A K + R+ Sbjct: 16 TLGCKLNFSETSTFGKMLEQMGVTSAGKGERADICLINTCSVTEVADRKCRQAIHRM--- 72 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFGKR 148 ++E D LVVV GC AQ EGE++ S I V++V+G L + L A R Sbjct: 73 ----VREHPDALVVVTGCYAQLEGEKV---SQIDGVDLVLGSNEKADLIQHLSEAWSDPR 125 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 K + R FL +Q+GC FCT+C +P+ RG + S++ Sbjct: 126 AQALHQFRGVKTSDIVSFQPSCARGNRTRYFLKVQDGCSYFCTYCTIPFARGRSRNPSIA 185 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V +A + G EI L G N+ + G+ GE+ F DL+ +L ++G+ R R ++ Sbjct: 186 SLVAQAEEAAAEGGREIVLTGVNIGDF-GR-TTGER--FIDLVKALDRVEGIQRYRISSL 241 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P + D LI MP+ H+P+QSGSD +L M R + + + I I+ PD Sbjct: 242 EPDLLDDELIDYCAHSRAFMPHFHIPLQSGSDEVLTLMRRHYDTALFARKIHLIKQKMPD 301 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG---SNMLEQVDEN 385 I D +VG GE + F + + ++ + +Q F YS R GT ++ D+ Sbjct: 302 AFIGVDVMVGCRGEKPEYFEDSYNFLNALPVSQLHVFPYSERPGTAALRIPYVVSDADKK 361 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 +++RLL L ++ +F VG+ EVL E+ + K Sbjct: 362 QRSKRLLELSD---QKTQAFYAQYVGREAEVLFERATRGKA 399 >gi|241761947|ref|ZP_04760032.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373627|gb|EER63199.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 419 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 124/442 (28%), Positives = 213/442 (48%), Gaps = 38/442 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI-RN 89 + GC++N+ +S ++ + + DLIV+N+C + +A + + + R Sbjct: 8 TLGCRLNIAESEAIKQALTDKDGSQ-------DLIVVNSCAVTSRAVAQTRQAIRKASRE 60 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-----ERAR 144 N+RI VV GC AQ + +I P V+ V+G ++ E AR Sbjct: 61 RPNARI--------VVTGCAAQID-PKIFADMPEVSRVIGNVEKHQAESFAFSGSDEEAR 111 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +V D + S+++ L ++R AFL IQ GC+ C+FC++P RG S Sbjct: 112 I--QVTDIN-SLKETTPHLIAAFSEHSR-----AFLEIQNGCNHHCSFCIIPQGRGRNRS 163 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 S ++D ARKLI+NG E+ L G ++ ++ G+ L + + L ++K L RLR Sbjct: 164 ASFDDILDCARKLINNGHQELVLTGVDLTSY-GQDLTSPSNLGELVAFLLKKLKNLKRLR 222 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P + L+ + + +MP++HL +Q+G + ILK M RRH+ + +++ ++ Sbjct: 223 LSSLDPDGIDPLLMALITEDERIMPHIHLSLQAGDNTILKRMRRRHSREQAIELVASLKK 282 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RP+IAI +D I GFP E ++ ++ ++D+ F YSPR GTP + M QV Sbjct: 283 RRPEIAIGADIIAGFPTEDEEMAANSLRMIDECDIVFGHIFPYSPRQGTPAAKM-PQVHT 341 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + ER L++ +Q + VG VL+E G G +P + L+ Sbjct: 342 PLIKERAQKLREAANRRQAEWLKTLVGSRQSVLLEGEGGR-----GHTPQFAPIRLSEAV 396 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 G I+ + +T L G+ Sbjct: 397 EASG-IVDIMVTGTDKDGLIGK 417 >gi|157736477|ref|YP_001489160.1| MiaB-like tRNA modifying enzyme [Arcobacter butzleri RM4018] gi|238065288|sp|A8ERB7|RIMO_ARCB4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|157698331|gb|ABV66491.1| MiaB-like tRNA modifying enzyme [Arcobacter butzleri RM4018] Length = 446 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 118/445 (26%), Positives = 219/445 (49%), Gaps = 31/445 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M Y+ + +AD+I++NTC + A ++ + I +L Sbjct: 16 SLGCTKNLVDSEVMLGRL--SDYQLTDDAQNADVIIVNTCGFIDSAKQES---INTILSL 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ERARFGKR 148 R E ++V+AGC+++ EE+ + P ++V G Y R+ EL+ +R+ F Sbjct: 71 HEDRKNES---VLVMAGCLSERYKEELQKELPEIDVFTGVGDYDRIDELVNEKRSNFTSE 127 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V + + ER+ I Y+ A++ + EGC++ C+FC +P +G SR+L Sbjct: 128 V----FLASETNERV-ITGSSYH------AYVKLSEGCNQACSFCAIPSFKGKLHSRTLQ 176 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V E + L+ G + + + Q+ +++ + LD K L+ + +I+G+ R Sbjct: 177 SLVKEVKALVAKGYVDFSFVSQDSSSFL-RDLDI-KNGLELLVEEVEKIEGIKTARILYL 234 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P + LI D V + Y +P+Q + +LK M R + ++++ ++S +P+ Sbjct: 235 YPSTTTLSLIDKIADSKVFVNYFDMPLQHITPSMLKIMKRGKGVEQLNELMNHMKS-KPN 293 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + + FI G PGET+DDF A + V+ + +A F YS GT ++V++ + Sbjct: 294 SFVRTTFIAGHPGETEDDFEALCNYVENFKFDRANVFSYSDEEGTTAETRTDKVEQELID 353 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--RSPWLQS----VVLNS 442 ER L + + + ++ VG+ EV I+ +E L+ ++ W S + +N Sbjct: 354 ERAEVLGEIISQTTQESLESEVGKTFEVYIDGESEEHEYLLSARKTIWAPSIDGEIYIND 413 Query: 443 KNHNIGDIIKV-RITDVKISTLYGE 466 + G+ IK +I VKI+ L G+ Sbjct: 414 NELSEGEQIKFGQIYTVKITELVGD 438 >gi|256784823|ref|ZP_05523254.1| hypothetical protein SlivT_10053 [Streptomyces lividans TK24] Length = 475 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 118/411 (28%), Positives = 185/411 (45%), Gaps = 37/411 (9%) Query: 40 DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99 DS + + G++ V+ ++AD+ V+NTC E A + L +LK G Sbjct: 2 DSEELAGRLEADGWKLVDDAEEADVAVVNTCGFVEAAKKDSVDALLEANDLKG----HGR 57 Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL------------------- 140 VV GC+A+ G+E+ P + V+G Y + + L Sbjct: 58 TQAVVAVGCMAERYGKELADALPEADGVLGFDDYADISDRLQTILNGGIHAAHTPRDRRK 117 Query: 141 -------ERARFGKRVVDTDYSVEDKFERLSIVDGGYN--RKR---GVTAFLTIQEGCDK 188 ER G V + D E ++ G R+R A + + GCD+ Sbjct: 118 LLPISPAERQEAGAAVALPGHGPTDLPEGVAPASGPRAPLRRRLDGSPVASVKLASGCDR 177 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248 C+FC +P RG ISR S V++E R L + GV EI L+ +N N GK L G+ Sbjct: 178 RCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEIMLVSEN-NTSYGKDL-GDIRLLE 235 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 LL +L+E+ G+ R+R + P +M LI + + PY L Q + +L++M R Sbjct: 236 SLLPNLAEVDGIERVRVSYLQPAEMRPGLIDVLTSTEKVAPYFDLSFQHSAPNVLRAMRR 295 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + +++D IRS P+ + S+FIVGFPGE++ D ++ F YS Sbjct: 296 FGDTDRFLELLDTIRSKAPEAGVRSNFIVGFPGESEADLAELERFLNHARLDAIGVFGYS 355 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 GT + +++DE+V AERL + + E D VG + VL+E Sbjct: 356 DEEGTEAATYGDKLDEDVVAERLARVSRLAEELVSQRADERVGATVRVLVE 406 >gi|57234236|ref|YP_181685.1| MiaB family tRNA modification protein [Dehalococcoides ethenogenes 195] gi|57224684|gb|AAW39741.1| tRNA modification enzyme, MiaB family [Dehalococcoides ethenogenes 195] Length = 413 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 104/392 (26%), Positives = 186/392 (47%), Gaps = 32/392 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + + GC++N ++ F GY V+ D+ D+ +LN+C + A K R + Sbjct: 6 LDTLGCKLNQAETEAFGREFARAGYRLVSPQDNWDIYILNSCTVTHVADRKA-----RYQ 60 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 R G + + GC AQ G+++ P +++ L+ R Sbjct: 61 IRIARRHNPAG--FICLMGCYAQNGGDKL--SCPDADLI------------LDNCRKSGI 104 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + + S+ + G R +F+ IQ+GCD FC++C+VP+ R + R + Sbjct: 105 AAEISRLFPPEALAPSLYENGRTR-----SFIKIQDGCDNFCSYCIVPFVRRHKSCRRVD 159 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +++ E G EI L G + + G+D + L+ ++ + RLR ++ Sbjct: 160 EIISEINLRQAEGYQEIVLTGTEIGEYASGGVD-----LAGLIEAILANTQIPRLRLSSL 214 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 P +++ L+ A + L + H+ +QSGSD IL M R ++ +Y + ++ IRS P Sbjct: 215 QPGEITPRLL-ALWENPRLCRHFHMALQSGSDCILALMRRPYSLGDYNRALEAIRSQVPG 273 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 A+++D IVGFPGET++DF ++ + + G+A+ +F YS RLGT S M ++D +V Sbjct: 274 AAVTTDLIVGFPGETEEDFALSLKYIQQAGFARVHAFPYSERLGTLASGMEGKIDPSVIK 333 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 +RL + + + + G EVL E Sbjct: 334 KRLSLVMAAAKSVSMQYRRQSKGLGKEVLWEN 365 >gi|260752486|ref|YP_003225379.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551849|gb|ACV74795.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 419 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 124/442 (28%), Positives = 213/442 (48%), Gaps = 38/442 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI-RN 89 + GC++N+ +S ++ + + DLIV+N+C + +A + + + R Sbjct: 8 TLGCRLNIAESEAIKQALTDKDGSQ-------DLIVVNSCAVTSRAVAQTRQAIRKASRE 60 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-----ERAR 144 N+RI VV GC AQ + +I P V+ V+G ++ E AR Sbjct: 61 RPNARI--------VVTGCAAQID-PKIFADMPEVSRVIGNVEKHQAESFAFSGNDEEAR 111 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +V D + S+++ L ++R AFL IQ GC+ C+FC++P RG S Sbjct: 112 I--QVTDIN-SLKETTPHLIAAFSEHSR-----AFLEIQNGCNHHCSFCIIPQGRGRNRS 163 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 S ++D ARKLI+NG E+ L G ++ ++ G+ L + + L ++K L RLR Sbjct: 164 ASFDDILDCARKLINNGHQELVLTGVDLTSY-GQDLTSPSNLGELVAFLLKKLKNLKRLR 222 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P + L+ + + +MP++HL +Q+G + ILK M RRH+ + +++ ++ Sbjct: 223 LSSLDPDGIDPLLMALITEDERIMPHIHLSLQAGDNTILKRMRRRHSREQAIELVASLKK 282 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RP+IAI +D I GFP E ++ ++ ++D+ F YSPR GTP + M QV Sbjct: 283 RRPEIAIGADIIAGFPTEDEEMAANSLRMIDECDIVFGHIFPYSPRQGTPAAKM-PQVHT 341 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + ER L++ +Q + VG VL+E G G +P + L+ Sbjct: 342 PLIKERAQKLREAANRRQAEWLKTLVGSRQSVLLEGEGGR-----GHTPQFAPIRLSEAV 396 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 G I+ + +T L G+ Sbjct: 397 EASG-IVDIMVTGTDKDGLIGK 417 >gi|313886783|ref|ZP_07820489.1| tRNA methylthiotransferase YqeV [Porphyromonas asaccharolytica PR426713P-I] gi|312923747|gb|EFR34550.1| tRNA methylthiotransferase YqeV [Porphyromonas asaccharolytica PR426713P-I] Length = 454 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 109/420 (25%), Positives = 202/420 (48%), Gaps = 36/420 (8%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------ADLIVLNTCHIREK 75 +V +R + GC++N ++ + + G ER++ D+ ++N+C + + Sbjct: 10 LVGKRAAFYTLGCRLNYAETSTIARQLATVGVERISDEHHHTTEVVPDICIVNSCSVTDT 69 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A +K S + R+ +E + L+VV GC AQ +G+ I + P V++VVG Sbjct: 70 ADKKCRSLINRLH-------REYPEALIVVTGCYAQLQGDRIAQ-MPGVDLVVGSGRKSE 121 Query: 136 LPELL-------ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDK 188 + LL + R +V + + + +R R FL +Q+GC+ Sbjct: 122 IVSLLTELYQKRNQERTQPQVATPHVTARRELQHFEPSVSSDDRTRH---FLKVQDGCNY 178 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248 +CT+C +P RGI + S++ +V +A ++ + G EI L G N+ + G+ GE T Sbjct: 179 YCTYCTIPAARGISRNGSIASLVAQAERVAELGGKEIILTGVNIGDF-GR-TTGE--TLL 234 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 +LL+ L+++ G+ R R + P ++ +I+ + MP+ H+P+QSGSD++L+ M R Sbjct: 235 ELLHQLTQVAGIARYRIGSIEPELLTPEIIQFVAETAQFMPHFHIPLQSGSDQVLRLMRR 294 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 + + + + I + PD + D I G GE + T+ + + ++Q F YS Sbjct: 295 HYDTALFAERLKLIYELIPDAFVGVDVIAGMRGELSEHHAETLAFLKEQPWSQLHVFPYS 354 Query: 369 PRLGTPGSNMLEQV---DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGK 423 R GT + V ++ ++ + LL L E+ +F G + VL E +HG+ Sbjct: 355 ERKGTKALEIKPAVPAAEKKLRTQELLALSS---ERHNAFCAPFTGSVRPVLWEETRHGE 411 >gi|56551967|ref|YP_162806.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis ZM4] gi|56543541|gb|AAV89695.1| MiaB-like tRNA modifying enzyme [Zymomonas mobilis subsp. mobilis ZM4] Length = 419 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 124/442 (28%), Positives = 212/442 (47%), Gaps = 38/442 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI-RN 89 + GC++N+ +S ++ + DLIV+N+C + +A + + + R Sbjct: 8 TLGCRLNIAESEAIKQAL-------TDKEGSQDLIVVNSCAVTSRAVAQTRQAIRKASRE 60 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-----ERAR 144 N+RI VV GC AQ + +I P V+ V+G ++ E AR Sbjct: 61 RPNARI--------VVTGCAAQID-PKIFADMPEVSRVIGNVEKHQAESFAFSGNDEEAR 111 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +V D + S+++ L ++R AFL IQ GC+ C+FC++P RG S Sbjct: 112 I--QVTDIN-SLKETTPHLIAAFSEHSR-----AFLEIQNGCNHHCSFCIIPQGRGRNRS 163 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 S ++D ARKLI+NG E+ L G ++ ++ G+ L + + L ++K L RLR Sbjct: 164 ASFDDILDCARKLINNGHQELVLTGVDLTSY-GQDLTSPSNLGELVAFLLKKLKNLKRLR 222 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P + L+ + + +MP++HL +Q+G + ILK M RRH+ + +++ ++ Sbjct: 223 LSSLDPDGIDPLLMALITEDERIMPHIHLSLQAGDNTILKRMRRRHSREQAIELVASLKK 282 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 RP+IAI +D I GFP E ++ ++ ++D+ F YSPR GTP + M QV Sbjct: 283 RRPEIAIGADIIAGFPTEDEEMAANSLRMIDECDIVFGHIFPYSPRQGTPAAKM-PQVHT 341 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 + ER L++ +Q + VG VL+E G G +P + L+ Sbjct: 342 PLIKERAQKLREAANRRQAEWLKTLVGSRQSVLLEGEGGR-----GHTPQFAPIRLSEAV 396 Query: 445 HNIGDIIKVRITDVKISTLYGE 466 G I+ + +T L G+ Sbjct: 397 EASG-IVDIMVTGTDKDGLIGK 417 >gi|134095120|ref|YP_001100195.1| ribosomal protein S12 methylthiotransferase [Herminiimonas arsenicoxydans] gi|238066316|sp|A4G6D4|RIMO_HERAR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|133739023|emb|CAL62071.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 454 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 125/476 (26%), Positives = 221/476 (46%), Gaps = 62/476 (13%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS ++ ++GY+ S D ADL+++NTC + A ++ Sbjct: 8 TPKIGFV-SLGCPKALVDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAVQESLD 66 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPE 138 +G + +N R V+V GC+ A G++I+++ P V V GP + L E Sbjct: 67 AIGEALH-ENGR--------VIVTGCLGAKKDANGDDIIQKVHPKVLAVTGP---HALGE 114 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 +++ + + L ++ G A+L I EGC+ C+FC++P Sbjct: 115 VMDAVHL--------HMPKPHAPFLDLLPPQGIKLTPKHFAYLKISEGCNHRCSFCIIPS 166 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCT 246 RG +SR ++ V+ EA L GV E+ ++ Q+ +A W GK + K Sbjct: 167 MRGDLVSRPIADVMMEAENLFKAGVKELLVISQDTSAYGVDIKFRMGFWNGKPV---KTH 223 Query: 247 FSDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 + L+ +L E+ VRL Y +P + + A G + +PYL +P+Q + Sbjct: 224 MTQLVEALGELAAPYGAWVRLHYVYPYPHVDAIIPMMAEGKI---LPYLDVPLQHAHPDV 280 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 LK M R + + + I R++ PD+ I S FI GFPGET+ +F +D + + + Sbjct: 281 LKRMKRPASGEKNIERIQAWRAMCPDLTIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRL 340 Query: 363 FSFKYSPRLGTPGSNMLEQVD---ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 F YSP G +++ V + R++ LQ+++ ++++ A VG+ + VLI+ Sbjct: 341 GCFAYSPVEGATANDLPNAVPEEVREERRGRVMLLQEEISKKRLQ---AKVGKTMRVLID 397 Query: 420 ---KHGKEKGKLVGRSPWLQSVVLNSK------NHNIGDIIKVRITDVKISTLYGE 466 + G + +P + VV + +G+ + V+IT L+ E Sbjct: 398 EVNRTGAATARSGADAPEIDGVVYVKAPYEPHIKYKVGEFVDVKITGADAHDLWAE 453 >gi|307190740|gb|EFN74642.1| CDKAL1-like protein [Camponotus floridanus] Length = 542 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 121/463 (26%), Positives = 211/463 (45%), Gaps = 45/463 (9%) Query: 22 IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 I+P Q +VK++GC N D+ M GY + ADL +LN+C ++ A ++ Sbjct: 56 IIPGTQTIYVKTWGCTHNNSDTEYMAGQLAMYGYNLSDDKLKADLWLLNSCTVKNPAEDQ 115 Query: 80 VYSFLGRIRNLKNSRIKEGGDL--LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 RN I+ G + +V+AGCV Q + + ++G Q R+ Sbjct: 116 -------FRN----EIEHGKKIGKHIVIAGCVPQGAPKSSFLQG---LSIIGVQQIDRVV 161 Query: 138 ELLERARFGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 E++E G R + + K S+ R+ + + I GC CT+C Sbjct: 162 EVVEETLKGNTVRFLHQKKNSGKKMGGASLSLPKV-RRNPLIEIIAINTGCLNQCTYCKT 220 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 + RG S ++V+ A++ + GVCE+ L ++ A+ G+ + + +LL+ L Sbjct: 221 KHARGELGSYQPEEIVERAKQAFEEGVCELWLTSEDTGAY-GRDIG---TSLPELLWKLV 276 Query: 256 EI--------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 ++ G+ Y H +M+ L + +LH+PVQSGSD++L M Sbjct: 277 DVIPDGCMMRVGMTNPPYILEHLDEMAKILRHPK-----VYSFLHIPVQSGSDQVLADMR 331 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R +T ++ ++ + P + I++D I GFP ET+ DF TM L K + F ++ Sbjct: 332 REYTRADFEHTVNFLSERVPGLTIATDIICGFPTETEVDFEETMALCQKYKFPSLFINQF 391 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE--QQVSFNDACVGQIIEVLIEKHGKEK 425 R GTP + M + + VK K+L E Q VG + +VLI + +K Sbjct: 392 FSRPGTPAARMPKVPTQEVKTR-----TKRLSEFFQSYEPYQHKVGLLQKVLITEMSHDK 446 Query: 426 GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VG + + + V++ + +G +I V+IT+ ++ GE + Sbjct: 447 QHYVGHNKFYEQVLIPMEERYLGKMIDVKITEATKFSMKGEPI 489 >gi|300312296|ref|YP_003776388.1| 2-methylthioadenine synthetase [Herbaspirillum seropedicae SmR1] gi|300075081|gb|ADJ64480.1| 2-methylthioadenine synthetase protein [Herbaspirillum seropedicae SmR1] Length = 458 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 125/473 (26%), Positives = 216/473 (45%), Gaps = 59/473 (12%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC + DS ++ ++GY+ S D ADL+++NTC + A ++ Sbjct: 12 LPKVGFV-SLGCPKALVDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAVQESLD 70 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPE 138 +G N +N + V+V GC+ AEG++I+++ P V V GP + + Sbjct: 71 AIGEALN-ENGK--------VIVTGCLGAKKDAEGDDIIQKIHPKVLEVTGPHAVGEVMQ 121 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + + D + G A+L I EGC+ C+FC++P Sbjct: 122 AVHKHLPKPHAPFIDL----------VPPQGVKLTPKHFAYLKISEGCNHRCSFCIIPSM 171 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTF 247 RG +SR ++ V+ EA L GV E+ ++ Q+ +A W GK + K Sbjct: 172 RGDLVSRPIADVMLEAENLFKAGVKELLVISQDTSAYGVDVKFRTGFWNGKPV---KTHM 228 Query: 248 SDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 + L+ +L E+ VRL Y +P + A G ++PYL +P+Q +L Sbjct: 229 TQLVGALGELAQQYGAWVRLHYVYPYPHVDQIIPMMAEGK---ILPYLDVPLQHAHPDVL 285 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 K M R + + I R++ PD+ I S FI GFPGET+ +F +D + + + Sbjct: 286 KRMKRPANGEKNIERIQAWRAMCPDLTIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLG 345 Query: 364 SFKYSPRLGTPG---SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 F YSP G +N + + + R++ LQ+++ ++++ A VG+ + VLI++ Sbjct: 346 CFAYSPVEGATANEIANPVPEEVREERRGRVMQLQEEISKKRLQ---AKVGKTLRVLIDE 402 Query: 421 HGKE--KGKLVGRSPWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYG 465 + G+ +P + VV + +G + VRIT L+G Sbjct: 403 VDRNGGTGRTYSDAPEIDGVVYVKPPFEPHRKLEVGQFVDVRITAADAHDLWG 455 >gi|116328778|ref|YP_798498.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|122283437|sp|Q04ZD0|RIMO_LEPBL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|116121522|gb|ABJ79565.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 439 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/367 (25%), Positives = 176/367 (47%), Gaps = 12/367 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++ + GC N DS+ M +G+ +++D +NTC + A E+ + Sbjct: 3 KKFYITTLGCPKNTADSMSMHHSLLEEGFTPATFAEESDFHFINTCTFIQSATEETIQTI 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 L +++K+ +VV GC A+ + I P V++ G Y + ++L R + Sbjct: 63 -----LSAAQVKKQNHQKLVVVGCFAERYPDNISSEIPEVDLFFGTGRYAQAGKIL-REK 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 F + ERL + N + A++ + +GC++ C+FC++P RG Sbjct: 117 FPDLSPPKREFNDSLLERLKLSSEIENYSKPY-AYVKVSDGCNRGCSFCIIPSFRGKFRE 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + ++ + + I G EI L+ Q+ + G + E D++ ++EI L LR Sbjct: 176 SPVEDILRDVDRAIRAGAKEICLVSQDTVYY---GRNSE--VLLDMVRKVAEIDSLEVLR 230 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P ++ L++ G+ + PYL P+Q S +ILKSMNR + ++ + R Sbjct: 231 LLYLYPDKKTEKLLRLMGETPKIAPYLESPLQHVSSKILKSMNRVGESSTFKDLFALARE 290 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 V+P + I + FI+G+PGE D + +++ + F YSP+ GT G+ + + V E Sbjct: 291 VKPGLEIRTSFIIGYPGEEPGDVDQVLRFIEETRPEKVNLFSYSPQEGTKGAELKQTVSE 350 Query: 385 NVKAERL 391 K+ R+ Sbjct: 351 KEKSRRI 357 >gi|228469810|ref|ZP_04054768.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] gi|228308649|gb|EEK17400.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] Length = 449 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 108/413 (26%), Positives = 195/413 (47%), Gaps = 26/413 (6%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD------ADLIVLNTCHIREK 75 +V +R + GC++N ++ + + G ER++ D+ ++N+C + + Sbjct: 9 LVGKRAAFYTLGCRLNYAETSTIARQLATVGVERISDEHHHTTEVLPDICIVNSCSVTDT 68 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYR 135 A +K S + R+ +E + L+VV GC AQ +GE+I + P V++VVG Sbjct: 69 ADKKCRSLINRLH-------REYPEALIVVTGCYAQLQGEQIAQ-MPGVDLVVGSGRKSE 120 Query: 136 LPELLE---RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 + LL + R + + + + +R R FL +Q+GC+ +CT+ Sbjct: 121 IVALLTELCQKRTQPKAATPHVTARRELQHFEPSVSSDDRTRH---FLKVQDGCNYYCTY 177 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 C +P RG+ + S++ +V +A ++ + G EI L G N+ + G+ GE T +LL+ Sbjct: 178 CTIPAARGVSRNGSIASLVAQAERVAELGGREIILTGVNIGDF-GRS-TGE--TLLELLH 233 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L+++ G+ R R + P ++ +I+ + MP+ H+P+QSGSD +L+ M R + Sbjct: 234 RLTQVAGIARYRIGSIEPELLTPEIIQFVAETAQFMPHFHIPLQSGSDHVLRLMRRHYDT 293 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + + + I + PD + D I G GE + T+ + ++Q F YS R G Sbjct: 294 ELFAERLKLIYELIPDAFVGIDVIAGMRGELPEHHAETLAFLKTQPWSQLHVFPYSERKG 353 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGK 423 T + V K R L E+ +F G + VL E +HG+ Sbjct: 354 TKALEIKPAVPATEKKLRTKELLALSSERHNAFCAPFAGSVRPVLWEETRHGE 406 >gi|325473662|gb|EGC76851.1| MiaB-like tRNA modifying enzyme [Treponema denticola F0402] Length = 468 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 117/452 (25%), Positives = 207/452 (45%), Gaps = 46/452 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 +++ GC++N +S + F G+ E S+ L ++NTC + KA +K Sbjct: 9 IETLGCRLNQVESEALAVRFAECGFDVFSKEAETSILPVKLCIVNTCTVTGKAEQKA--- 65 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT--YYRLPELLE 141 R L +KE + +++V GC A+ E + I + + + G + LP+ L+ Sbjct: 66 ----RRLIRLLLKEHEESVILVTGCYAELEADSIEKINKRIIAFSGKKKDELDGLPQFLK 121 Query: 142 RARFGKRVVDTD---------------YSVEDKFERLSIVDGGYNRKRGVT--------- 177 + + + D YS ED+ ++ ++ RK Sbjct: 122 DSCLKNKDLKEDTVNLKKNLLIFRNKIYSKEDRLDKSFLLKETERRKSMFKLSSPVFVFH 181 Query: 178 --AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 A L IQ+GC+ C +C + RG +S + V ++ NG E+ L G N++ + Sbjct: 182 SRASLKIQDGCNNACAYCRIRLARGTSVSLPAEEAVRRIVQIEKNGAAEVVLSGVNLSQY 241 Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295 R + G F++LL L E +RLR ++ +P + D +++ + + P+ HL + Sbjct: 242 RDETYGG----FANLLAKLLENTKKIRLRISSMYPECVDDGILEIVANKRI-CPHFHLSI 296 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355 QSGSD+ILK+MNR + + R+ I+ +R + + I D I GFP ET+DDF T + + Sbjct: 297 QSGSDKILKAMNRPYREADIRRAINNLRKAKDNPFIGCDIITGFPSETEDDFLQTFKMCE 356 Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415 ++ F +S R GT +M +V E R L + + S+ +C G++ Sbjct: 357 ELKIPGIHVFPFSARPGTRAFSMRPKVPEREAGRRASLLSELSGKNYQSYLASCNGKLFF 416 Query: 416 VLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHN 446 +IEK E ++V + +V+N K N Sbjct: 417 GVIEKPQNNEDLRIVTENYLSLPLVVNKKAEN 448 >gi|160942971|ref|ZP_02090209.1| hypothetical protein FAEPRAM212_00448 [Faecalibacterium prausnitzii M21/2] gi|158445665|gb|EDP22668.1| hypothetical protein FAEPRAM212_00448 [Faecalibacterium prausnitzii M21/2] Length = 431 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 113/431 (26%), Positives = 212/431 (49%), Gaps = 25/431 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N+ ++ +E +F + G+ + AD+ ++N+C + +K +L R + Sbjct: 7 TLGCKVNLNETGALEQLFRANGFTIAQEGEAADVFIVNSCTVTNFGDQKSRKWLRRKK-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-KRV 149 +E + V+ GC QA EE + ++V G + E +++ G +R+ Sbjct: 65 -----RENPGAVTVLTGCYPQAFPEEAAQFME-ADLVCGNGDRKAILENVQKLLDGHERI 118 Query: 150 VD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V + ++FE L + + + AF+ +++GC++ C +CV+P RG SR+ Sbjct: 119 VAIAPHQRGEQFEELPVERFETHTR----AFIKVEDGCNRQCAYCVIPRARGPVRSRAEE 174 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++ E +L G E+ L ++ ++ GLD +L+ +++ G+ R+R + Sbjct: 175 SILAELHQLAAAGYREVVLSAISLPSY---GLD-TGTNLVELVEKCAQVPGIERIRLGSL 230 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--- 325 P ++ I +D L P HL +QSG L+ M R +TA +Y Q++++IR+ Sbjct: 231 DPDMLTPEFISRLAAVDKLCPQFHLSLQSGCTATLRRMRRVYTAQQYAQVVEQIRAAYGS 290 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 RP ++ ++D I GFPGET ++F + + KIG+ + F YS R GTP + +Q+ E Sbjct: 291 RP-VSFTTDCICGFPGETAENFEESCAFLKKIGFLKVHVFPYSRRSGTPAYDFPDQIHER 349 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKL-VGRSPWLQSVVLNSKN 444 K ER + + + A G EVL+E G L G + VV+++ Sbjct: 350 EKQERSRRMNAVAEQVRCEALAAFEGTEDEVLLET--PLSGTLFTGYTRLYIPVVVSAPG 407 Query: 445 HNIGDIIKVRI 455 G I++V++ Sbjct: 408 CESGQIVRVKL 418 >gi|312796118|ref|YP_004029040.1| tRNA 2-methylthioadenosine synthase homolog [Burkholderia rhizoxinica HKI 454] gi|312167893|emb|CBW74896.1| tRNA 2-methylthioadenosine synthase homolog [Burkholderia rhizoxinica HKI 454] Length = 478 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 129/477 (27%), Positives = 219/477 (45%), Gaps = 74/477 (15%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS ++ ++GY+ + D ADL+V+NTC ++A ++ +G Sbjct: 36 SLGCPKALVDSEQIITQLRAEGYQICGTYDGADLVVVNTCGFIDEAVQESLDAIGEA--- 92 Query: 91 KNSRIKEGGDLLVVVAGCVA---QAEGEEILRR-SPIVNVVVGPQTYYRLPELLE--RAR 144 + E G V+V GC+ A G ++ + P V V GP L E+++ A Sbjct: 93 ----LAENGK--VIVTGCLGAKKNASGTGLIEQVHPKVLAVTGPHA---LGEVMQAVHAH 143 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K D F L + G A+L I EGC+ CTFC++P RG +S Sbjct: 144 LPKP--------HDPFVDL-VPAAGIKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVS 194 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGE-KCTFSDLLY 252 R +++V+ EA L +GV E+ ++ Q+ +A W G+ L + L Sbjct: 195 RPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKFRTGFWNGRPLRTRMNELAAALGE 254 Query: 253 SLSEIKGLVRLRYTTSHPRD------MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 ++ VRL Y +P M+D + H L+PYL +P+Q +L+ M Sbjct: 255 LAAQYGAWVRLHYVYPYPSVDEIVPLMADGPYRGH-----LLPYLDVPLQHADPEVLRRM 309 Query: 307 NRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 R A + ++R+R+ R PD+ I S FIVGFPGET+ F +D + + + Sbjct: 310 KRPANA---EKTLERVRAWREACPDLTIRSTFIVGFPGETEAQFEVLLDFIREAQLDRVG 366 Query: 364 SFKYSPRLGTPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 F YSP G + + + ++V+ R + + + + +++ VG+ ++VLI++ Sbjct: 367 CFAYSPVEGASANELDGTLPDDVREARRARFMAVAESVSAERLKRK---VGKTLKVLIDE 423 Query: 421 HGKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVKISTLYGEL 467 + G +GRS P + VV S+ + +GD + V IT L+G++ Sbjct: 424 VNADGG--IGRSAADAPEIDGVVYVSPASKASRRYKVGDFVNVSITGADGHDLWGDV 478 >gi|225181946|ref|ZP_03735380.1| MiaB-like tRNA modifying enzyme YliG [Dethiobacter alkaliphilus AHT 1] gi|225167386|gb|EEG76203.1| MiaB-like tRNA modifying enzyme YliG [Dethiobacter alkaliphilus AHT 1] Length = 440 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 129/449 (28%), Positives = 214/449 (47%), Gaps = 40/449 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + V S GC N+ DS M + G+ + A +I++NTC + A E+ + Sbjct: 5 KVAVVSLGCAKNLVDSETMLGLLNEDGFTLTTDPEKAHVIIINTCGFIDAAKEESIA--- 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + L+ + KE L++ AGC+AQ +E+L P V+ + G + + R Sbjct: 62 --KILEMAAYKEKNCRLLLAAGCMAQRFADELLDELPEVDGLFGTNDVHGAAVAIRRGLA 119 Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G++V T +++ D RL TA+L I EGCD CT+C +P RG Sbjct: 120 GEKVSFTQGEFAGSDDAPRLLSTPSH-------TAYLKIAEGCDNRCTYCAIPAIRGPYQ 172 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR VV EA+ L GV E+ L+ Q++ + G G K LL L+ I G+ + Sbjct: 173 SRDGQAVVSEAQSLAAGGVKELNLIAQDITLY-GTDRTG-KAQLPKLLGELAAIDGVHWI 230 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++P + +I+A + + YL LP+Q GSD+IL+ M R+ TA + ++I+ +R Sbjct: 231 RLLYAYPERLDQRIIEAVAREEKVCKYLDLPLQHGSDKILRRMGRKTTADKILKLIETLR 290 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDL-----VDKIGYAQAFSFKYSPRLGTPGSNM 378 P I + S FI GFPGE +++F + +D++G+ F YS GTP + Sbjct: 291 REVPGIVLRSSFIAGFPGEGEEEFGEMLAFLKEAQLDRVGF-----FAYSREEGTPAAAY 345 Query: 379 LEQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 QV VK ER+ + LQ + E++ VG+ + +++ + ++ ++ Sbjct: 346 SNQVPAEVKEERVRRAVALQSAISEKK---QQQLVGKTVTAMVDGSSAQDPSILLARSYM 402 Query: 436 QSV-------VLNS-KNHNIGDIIKVRIT 456 Q+ + NS K G ++ V IT Sbjct: 403 QAPEVDGYIRIQNSDKKAQKGGLLPVTIT 431 >gi|32266379|ref|NP_860411.1| hypothetical protein HH0880 [Helicobacter hepaticus ATCC 51449] gi|32262429|gb|AAP77477.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 423 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 114/446 (25%), Positives = 205/446 (45%), Gaps = 30/446 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + K++GC+ N++D+ M+ + +E + ++AD++V+N+C + A V +L Sbjct: 5 KKVYFKTFGCRTNLFDTQVMKSNL--KHFECARNENEADVVVVNSCTVTNGADSGVRGYL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++R L V GC GEEI + +V+ V R+ E L Sbjct: 63 NKMRELNKK---------VYFTGCGVGTRGEEIFTHN-LVHSVFAHSFKERIDEFLTT-- 110 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 +R T+ + E + G +R AFL IQEGCD C++C++P+ RG S Sbjct: 111 -NQRFFHTESAPEHIDSTIVTHFSGKSR-----AFLKIQEGCDFACSYCIIPFVRGKARS 164 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 ++++ R L NG E+ L G NV ++ G D + + L+ + + L RLR Sbjct: 165 YPQKSILEQIRALAQNGKTEVVLTGTNVGSY---GKDLKDYNLARLIKDIYSLGVLKRLR 221 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 + P + D +K +L + +LH+ +Q S+ +L MNR + ++ + Sbjct: 222 VGSLEPSQI-DSELKESLELPFMEKHLHIALQHTSNTMLSLMNRYNRVESDLELF--MYF 278 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + + SDFIVG PGE++ ++ ++ F YS R GTP S + ++V Sbjct: 279 AKKGFCLGSDFIVGHPGESEAVWQEALENFKSFPLTHLHPFVYSKRDGTPSSTIKDEVKG 338 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV--GRSPWLQSVVLNS 442 N+ ERL L++ + +F A ++VL E + + G + + S Sbjct: 339 NIAKERLHTLKEIVVNNNEAFRKAH-NMPLDVLCESRRESDTAFIYTGLDQFFNPMQFES 397 Query: 443 KN-HNIGDIIKVRITDVKISTLYGEL 467 N H G +K++ ++ YGE+ Sbjct: 398 SNPHLEGQWVKIKTYSIEKERNYGEV 423 >gi|85707593|ref|ZP_01038659.1| hypothetical protein NAP1_00120 [Erythrobacter sp. NAP1] gi|85689127|gb|EAQ29130.1| hypothetical protein NAP1_00120 [Erythrobacter sp. NAP1] Length = 456 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 125/470 (26%), Positives = 205/470 (43%), Gaps = 52/470 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + S GC + DS R+ + GY AD++++NTC + A E+ + + Sbjct: 5 KRVGMVSLGCPKALVDSERILTRLRADGYAMSADYAGADVVLVNTCGFLDSAKEESLAAI 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G I E G V+V GC+ E E I P V V G Y ++ E + Sbjct: 65 GEA-------IAENG--RVIVTGCMGD-EAEAIRAAHPQVLAVTGAHQYEQVVEAVHEHA 114 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + D + + + Y+ +L I EGC+ C FC++P RG S Sbjct: 115 PPSQGPYIDLIPQPD---VKLTPRHYS-------YLKISEGCNHSCAFCIIPQLRGKLAS 164 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW------------RGKGLDGEKCTFSDLLY 252 R + V+ EA KL+ G E+ ++ Q+ +A+ G+ + +DL Sbjct: 165 RRIDAVLREAEKLVAAGTKELLVISQDTSAYGVDTRHEARPWPMGQDTREVRAHMTDLAR 224 Query: 253 SLSEIK------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 L +++ RL Y +P + A G +L PYL +P Q S +LK+M Sbjct: 225 ELGQLRTAEGKAPWTRLHYVYPYPHVDKVIPLMAEG---LLTPYLDIPFQHASPNVLKAM 281 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R + + + R + P+IA+ S F+VGFPGET+DDF+ +D +++ + +F+ Sbjct: 282 KRPANEAKVLERLKGWREICPEIAVRSSFVVGFPGETEDDFKYLIDWLEEAQLDRVGAFR 341 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK--E 424 + P G +++ V E VK ER L + + A VG+ + V+I+ G+ E Sbjct: 342 FEPVEGAAANDLPNPVPEEVKEERYARLMEVTERISAAKLAAKVGKTLPVIIDDVGEPDE 401 Query: 425 KGKL--VGRS----PWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465 G + GRS P + V + G I+ V + D LYG Sbjct: 402 DGDIGATGRSQADAPEIDGAVYLRNVPETLEPGAIVDVEVEDADAHDLYG 451 >gi|20094517|ref|NP_614364.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19] gi|19887629|gb|AAM02294.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19] Length = 423 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 124/452 (27%), Positives = 203/452 (44%), Gaps = 47/452 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V+ YGC N D + ++ +G+E V ++AD+ VL TC +R+ ++ + R+R Sbjct: 6 VEVYGCAANHDDGRLVRELLRREGFEVVEDAENADVAVLLTCIVRDSVDARM---VNRMR 62 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L+ + VVAGC +A E + P +VGP+ R+PE + G R Sbjct: 63 ELER--------VPTVVAGCFPEAYPERARKLRPDA-ALVGPRHLDRIPEAVRAVLRGDR 113 Query: 149 VV------DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 V D D+ + E ++ A + I EGC C +C V RG Sbjct: 114 VEFLGEREDIDWKADAPRELPNL-----------AAIVPIAEGCPNRCAYCAVKLARGNL 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCT--FSDLLYSLSEIKG 259 S +++ ++ ++ G EI L Q+ + GLD G D++ S Sbjct: 163 RSFPPERILRRVKRELERGAVEIHLTAQDTATY---GLDRGTNVVELLEDVVDLCSRYGA 219 Query: 260 LVRL-RYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 VRL + H +SD L D VL +H+PVQSG D +L+ MNR +T E + Sbjct: 220 RVRLGMFNPGHAYPISDDLADLFASRDDVLYRSIHMPVQSGDDEVLRRMNRNYTVEEALE 279 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + + +D IVGFPGET++ FR T+ +++ + ++ R GTP + Sbjct: 280 VYRAFERRLGYFSFITDVIVGFPGETEEAFRNTLRFLERTRPHILHASRFCRRPGTPAAR 339 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV--LIEKHGKEKGKLVGRSPWL 435 M +QV E+VK R L +K E N +G+ +EV ++EK G+++ Sbjct: 340 MEDQVPEDVKLRRSRILHRKRLEWAEEANRELIGETVEVTMVMEKWGRDEHA-------- 391 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 + V + G+ ++ RI D + L E+ Sbjct: 392 KKTVFRGEVPEPGERLECRIVDASHARLVAEV 423 >gi|242021866|ref|XP_002431364.1| radical sam protein, putative [Pediculus humanus corporis] gi|212516632|gb|EEB18626.1| radical sam protein, putative [Pediculus humanus corporis] Length = 442 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 105/378 (27%), Positives = 178/378 (47%), Gaps = 42/378 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++K++GC N DS M + S GY V + ADL +LN+C ++ A + + Sbjct: 55 HKIYIKTWGCTHNSSDSEYMAGLLSSYGYNLVEDPEIADLWLLNSCTVKNPAESHFRNEI 114 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLERA 143 + R L +V AGCV Q +++ I N+ ++G R+ E++E Sbjct: 115 EKGRKLGKH---------IVAAGCVPQGAP----KQNYIQNLSIIGIHNIDRVVEVVEET 161 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYN------RKRGVTAFLTIQEGCDKFCTFCVVPY 197 G V E+ ++L GG N RK + I GC CT+C + Sbjct: 162 LKGHSVRLLSQKKENG-KKL----GGANLLLPKVRKNPYIEIIPISTGCLNQCTYCKTKH 216 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG S + ++V+ A++ GV E+ L ++ A+ GK + + +LL+ + E+ Sbjct: 217 ARGELGSYPVEEIVERAKQAFSEGVVELWLTSEDTGAY-GKDIGA---SLPELLWKVVEV 272 Query: 258 --------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 G+ Y H +M+ L + + + +LH+PVQSGSD +L M R Sbjct: 273 IPDNCRMRVGMTNPPYILEHLEEMAKIL-----NHEKVYSFLHVPVQSGSDAVLSDMKRE 327 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 +T +++ ++D +R P I I++D I GFP ET+ DF T+ L + + F ++ P Sbjct: 328 YTISDFKHVVDFLRLRVPGITIATDIICGFPTETEKDFEETLSLCETYKFPSLFINQFYP 387 Query: 370 RLGTPGSNMLEQVDENVK 387 R GTP + M++ VK Sbjct: 388 RPGTPAAKMVKVPMHEVK 405 >gi|332877549|ref|ZP_08445296.1| tRNA methylthiotransferase YqeV [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684655|gb|EGJ57505.1| tRNA methylthiotransferase YqeV [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 447 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 127/441 (28%), Positives = 217/441 (49%), Gaps = 36/441 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + + G V + + AD+ V+NTC + E A K R Sbjct: 16 TLGCKLNFAETSTIGRLLKEMGVRTVRAGERADICVVNTCSVTEVADHKC-------RQA 68 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTY--------YRLPELL 140 + +++ VVV GC AQ + E++ S I V++V+G + RLP LL Sbjct: 69 IHKLVRQHPGAFVVVTGCYAQLKPEQV---SAIDGVDLVLGAEQKGDILRYLEERLP-LL 124 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 R Y+V K + +R R FL +Q+GCD +CT+C +PY R Sbjct: 125 PAERKLADAEHEAYTVPTKDIHTFVPSCSCGDRTR---YFLKVQDGCDYYCTYCTIPYAR 181 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G + S++ +V +A + G EI L G N+ + GK GE +F DL+ +L ++G Sbjct: 182 GRSRNGSIASLVRQAEQAASEGGREIVLTGVNIGDF-GK-TTGE--SFLDLVKALDRVEG 237 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R R ++ P +++ ++ + MP+ H+P+QSGSD +LK M RR+T + + I Sbjct: 238 IARYRISSIEPNLLTEEVLAYCAESRAFMPHFHIPLQSGSDEVLKLMRRRYTTNFFAEKI 297 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R++ + PD + D IVG GET++ F + + + +Q F YS R GT + Sbjct: 298 SRVKELMPDAFVGVDVIVGTRGETEECFEEAFEFIRSLDVSQLHVFSYSERPGTMALKIE 357 Query: 380 EQV---DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 V +++ +++RLL L E +F +G EVL+E+ + +G + G + Sbjct: 358 HSVSPEEKHRRSQRLLELSDAKWE---AFYRRYIGTEAEVLLER-SRTEGVMHGFTANYI 413 Query: 437 SVVLNSKNHNIGDIIKVRITD 457 V L + + I++VR+ D Sbjct: 414 RVELPVEGNLDNQIVRVRLGD 434 >gi|56695846|ref|YP_166197.1| ribosomal protein S12 methylthiotransferase [Ruegeria pomeroyi DSS-3] gi|81350443|sp|Q5LUV8|RIMO_SILPO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|56677583|gb|AAV94249.1| RNA modification enzyme, MiaB-family [Ruegeria pomeroyi DSS-3] Length = 466 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 129/455 (28%), Positives = 204/455 (44%), Gaps = 44/455 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 37 SLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLDAIGEA--- 93 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ AE + I P + V GP Y ++ + + A V Sbjct: 94 ----LKENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHGA------V 140 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D D F L G R + +L I EGC+ C FC++P RG SR V Sbjct: 141 PPD---PDPFVDLLPASGVQLTPRHYS-YLKISEGCNHKCKFCIIPDMRGKLASRPAHAV 196 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLSEIKG 259 + EA KL+DNGV E+ ++ Q+ +A+ GLD + + +DL L ++ Sbjct: 197 LREAEKLVDNGVKELLIISQDTSAY---GLDRKYDTNLWKNREVRSHITDLARELGQLDA 253 Query: 260 LVRLRYTTSHP--RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 VRL Y +P R++ + A +L +PYL +P Q LK M R A Sbjct: 254 WVRLHYVYPYPHVRELIPLMADAGCNL---LPYLDIPFQHAHPDTLKRMARPAAAARTLD 310 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 I R + P+I + S FIVG+PGET+ +F+ +D +D+ + F+Y G ++ Sbjct: 311 EIAAWREICPEITLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGCFQYENVAGARSND 370 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS--PWL 435 + + V VK ER K + + A VGQ+IEV++++ E +S P + Sbjct: 371 LPDHVPAEVKQERWDRFMAKAQAISEAKLAARVGQVIEVIVDEVDDEAATCRTKSDAPEI 430 Query: 436 QSVVLNSKNH---NIGDIIKVRITDVKISTLYGEL 467 + + GDI+ V + + L+G L Sbjct: 431 DGNLFIDEGFEGLQPGDIVTVEVDEAGEYDLWGRL 465 >gi|294673495|ref|YP_003574111.1| 30S ribosomal protein S12 methylthiotransferase RimO [Prevotella ruminicola 23] gi|294473743|gb|ADE83132.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella ruminicola 23] Length = 437 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 120/454 (26%), Positives = 207/454 (45%), Gaps = 45/454 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTC-HIREKAAEKVYSFLGRI 87 S GC N+ DS + + + GY+ + DD +++V+NTC I + E + + L Sbjct: 9 SLGCSKNLVDSETLMGLMEANGYQCTHDSDDPQGEIVVVNTCGFINDAKEESINTILEFA 68 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-- 145 + RI++ + V GC+++ ++ + P V+ G Y +L + L + Sbjct: 69 QAKTEGRIEK-----LFVMGCLSERYLADLEKEIPEVDGWYGKFNYKKLLKDLNGEEYNA 123 Query: 146 --GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 GKR + T A++ I EGCD+ C +C +P G Sbjct: 124 CEGKRHITTPRHY---------------------AYIKISEGCDRHCAYCAIPLITGKHQ 162 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +++DE R L+ G E ++ Q + + G LDG K ++L+ +++I G+ + Sbjct: 163 SRPMQEILDEVRYLVSQGTKEFNVIAQELTYY-GVDLDG-KQHIAELIEQMADIPGVEWI 220 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++P L++ + + YL + +Q SD +L M R T E +++ R+R Sbjct: 221 RLHYAYPTHFPWDLLRVIREKQNVCKYLDIALQHVSDNMLSRMRRHVTKDETYELVRRMR 280 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQV 382 P I I + +VGFPGETD+DF V + + +F YS GT N + V Sbjct: 281 EEVPGIHIRTTLMVGFPGETDEDFEELKAFVKWARFERMGAFSYSEEEGTYSADNFEDDV 340 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438 E+VK RL + + + VG++ +V+I++ +E +GR SP + Sbjct: 341 PEDVKQSRLDKIMRIQQNISAELEAEKVGKVFKVIIDR--REGDYYIGRTEFCSPEVDPE 398 Query: 439 VL---NSKNHNIGDIIKVRITDVKISTLYGELVV 469 VL IG+ V ITD + LYG ++ Sbjct: 399 VLIPAAEAKLTIGNFYDVLITDSEEFDLYGTTII 432 >gi|297202795|ref|ZP_06920192.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sviceus ATCC 29083] gi|197713883|gb|EDY57917.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sviceus ATCC 29083] Length = 498 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 131/490 (26%), Positives = 214/490 (43%), Gaps = 52/490 (10%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G++ V +AD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLEADGWDLVEDAAEADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 L +LK G VV GC+A+ G+++ P + V+G Y + + L Sbjct: 61 VDALLEANDLKG----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116 Query: 141 E-------------RAR----------------------FGKRVVDTDYSVEDKFERLSI 165 + R R G + + D E L+ Sbjct: 117 QTILSGGIHAAHTPRDRRKLLPISPAQRQESAASVALPGHGPAAETPEAAPADLPEGLAP 176 Query: 166 VDGGYN--RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220 G R+R A + + GCD+ C+FC +P RG ISR S V++E R L + Sbjct: 177 ASGPRAPLRRRLDGSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQ 236 Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280 GV EI L+ +N N GK L G+ LL L+E+ GL R+R + P +M LI Sbjct: 237 GVKEIMLVSEN-NTSYGKDL-GDIRLLESLLPELAEVDGLERVRVSYLQPAEMRPGLIDV 294 Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340 ++PY L Q + +L++M R + +++D IR P+ + S+FIVGFP Sbjct: 295 LTSTPKVVPYFDLSFQHSAPGVLRAMRRFGDTDRFLELLDTIRGKAPEAGVRSNFIVGFP 354 Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400 GET+ D ++ F YS GT + ++DE+V AERL + + E Sbjct: 355 GETEADLAELERFLNGARLDAIGVFGYSDEEGTEAATYENKLDEDVVAERLAHVSRLAEE 414 Query: 401 QQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL--NSKNHNIGDIIKVRIT 456 + VG+ ++VL+E +E G+ ++P VL + + ++G +++ ++ Sbjct: 415 LVSQRAEERVGETVQVLVESVDEEGVYGRGAHQAPETDGQVLLTSGEGLSVGRMVEAKVV 474 Query: 457 DVKISTLYGE 466 + L E Sbjct: 475 GTEGVDLVAE 484 >gi|31789378|gb|AAP58495.1| conserved hypothetical protein [uncultured Acidobacteria bacterium] Length = 414 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 116/381 (30%), Positives = 180/381 (47%), Gaps = 34/381 (8%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN DSLR+E+ ++G + ADL+V+NTC + A + + RI Sbjct: 1 MNQADSLRIEEGLRARGGLDAPA-SGADLVVVNTCSVTAAADQGARQTIRRI-------A 52 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA--RFGKRVVDTD 153 ++ + VVV GC A ++ +V V+ + + A R D D Sbjct: 53 RDNPGVRVVVTGCYATRCESDVAALPNVVRVIRNDAKDGLVDDAFAEAGLRAAPHAQDGD 112 Query: 154 YSVEDKFERLSIVDGGYNRKRGVTAF-LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 +IV G R TAF L +Q GC++ C +C++P TRG S ++ VV Sbjct: 113 GPCGS-----AIVPGLAGR----TAFTLRVQTGCEEACAYCIIPTTRGAGRSVAIGDVVR 163 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 E ++ +G EI L G ++ ++ G+ L+ + + DLL +L V R ++ P D Sbjct: 164 EVERIAASGFKEIALTGVHLGSF-GRDLESRR-SLIDLLRALDGCAADVVFRISSLEPMD 221 Query: 273 MSDC---LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 + L+ + G P+ HLP+Q S+R+L M R +T EYR ++D + + P Sbjct: 222 CTKAIVDLVASSGGR--FAPHFHLPLQHASNRMLALMRRPYTLGEYRGLVDGLAARLPHA 279 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 +I SD IVGFPGE+DDDFRA +D + F YS R GT + M +V+ E Sbjct: 280 SIGSDLIVGFPGESDDDFRANLDYLPASPLTHLHVFPYSDRPGTAATGMGGKVEGMTIRE 339 Query: 390 RLL-------CLQKKLREQQV 403 R L L ++ R+ QV Sbjct: 340 RGLRMREIGAALARRFRQSQV 360 >gi|328948729|ref|YP_004366066.1| RNA modification enzyme, MiaB family [Treponema succinifaciens DSM 2489] gi|328449053|gb|AEB14769.1| RNA modification enzyme, MiaB family [Treponema succinifaciens DSM 2489] Length = 482 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 108/423 (25%), Positives = 187/423 (44%), Gaps = 42/423 (9%) Query: 30 KSYGCQMNVYDSLRMEDMFFSQGY--------ERVNSMDDADLIVLNTCHIREKAAEKVY 81 ++ GC++N ++ F G+ N D L V+NTC + KA +K Sbjct: 8 ETLGCRLNQDETEGAARSFSDAGFICEFNSISSAKNPSQDVILSVINTCTVTGKAEQKA- 66 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV------------- 128 R + +++ + ++V GC A+ EI S V+V Sbjct: 67 ------RRIIRLLLEKFFNAPLIVTGCYAELADSEITSISKNRIVIVPGTKKFVLKEIAV 120 Query: 129 -----------GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT 177 G + L + + F +D+ + ++ + + T Sbjct: 121 AMNGGDLDFKSGKFNFENLKSFVSKKIFSFERIDSAKKIPMAINPFALYTPVFEKHSRAT 180 Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237 L IQ+GC+ C+FC + + RG +S ++++ A+++ + G EI L G N++ + G Sbjct: 181 --LKIQDGCNNSCSFCRIHFARGTSVSLEPEKILERAKEIENLGSSEIVLTGVNLSQYAG 238 Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297 DG F DLL L V+ R ++ +P+ ++ L D V P+ HL +QS Sbjct: 239 MSKDGAIFDFKDLLSFLLSNTKKVKFRISSFYPQHITKELCAVLSDKRV-QPFFHLSIQS 297 Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 GSD IL SM R + + + +R + + IS D I GFPGET+DDF T L K+ Sbjct: 298 GSDSILNSMRRPYKREQVENAVQLLRECKMNPFISCDIIAGFPGETEDDFEQTKSLCKKM 357 Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417 +A +F +S R GT +M ++ E K ER+ L + ++S+ ++ + +E Sbjct: 358 NFAWIHAFPFSARPGTLAFSMTPKIPERTKNERVKWLAEIAVSGKISYINSFKEKTVEAT 417 Query: 418 IEK 420 +EK Sbjct: 418 VEK 420 >gi|298675805|ref|YP_003727555.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum Z-7303] gi|298288793|gb|ADI74759.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum Z-7303] Length = 433 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 124/450 (27%), Positives = 213/450 (47%), Gaps = 26/450 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + V +YGC + S M D QG+E V+ AD++V NTC ++ +K+ +G Sbjct: 2 KVHVATYGCPSSQAASEIMMDAIKRQGHELVDE-KSADVVVFNTCTVKYTTEQKILHKIG 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + ++G L VVV+GC+ + + ++IL + +++ G + R+ E+L+ Sbjct: 61 ELG-------RKG--LEVVVSGCMPEVQHDDILDNNQDAHIL-GVNSITRINEVLDSIEN 110 Query: 146 GKRVVDTDYSVEDKFERLS-IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K ++ +E R I++ R I +GC+ C +CVV RG S Sbjct: 111 AKNKNNSGRRLEIFSSRPDDILNAPRTRFNQNIHICQISQGCNNRCAYCVVRTARGKLKS 170 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRL 263 + +V++ RK + G EI + Q+ + G+D + LL ++ I+G ++ Sbjct: 171 FDIDSIVEDVRKAVSEGCREIWITSQDNAQY---GIDRQNGVLLPQLLDRVASIEGNFKI 227 Query: 264 RYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R +P + D L+K + + + + +LHLP+QS S+++L MNR +T E +II Sbjct: 228 RVGMMNPFSVYPILDDLLKVYEN-NKIYKFLHLPIQSASEKVLGYMNRNYTMSEVDEIIT 286 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + RS D+ + +D IVGFPGET+DDF ++D V + +Y+PR P + LE Sbjct: 287 KFRSRFNDLTLVTDIIVGFPGETEDDFYKSIDWVKNYRPDKVNISRYTPR---PHTKALE 343 Query: 381 --QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 +D + R L ++ VG +V + K K KG ++ R+ + V Sbjct: 344 YRNIDSRIVVRRSNELHHVCDTVKLESKKEMVGWHGKVFVSKDAKYKG-VMARTESYKPV 402 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V+ N G V ITD G+L Sbjct: 403 VIPESNLPPGQWCDVEITDTTSGYFLGKLT 432 >gi|260575306|ref|ZP_05843306.1| MiaB-like tRNA modifying enzyme YliG [Rhodobacter sp. SW2] gi|259022566|gb|EEW25862.1| MiaB-like tRNA modifying enzyme YliG [Rhodobacter sp. SW2] Length = 454 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 122/450 (27%), Positives = 200/450 (44%), Gaps = 40/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 32 SLGCPKALVDSERILTRLRAEGYAISADYQGADAVIVNTCGFLDSAKAESLEAIGEALA- 90 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ A+ I P V V GPQ Y E + A G Sbjct: 91 QNGR--------VIVTGCLG-ADAGYITGAHPKVLAVTGPQQY----EAVLDAVHGAVPP 137 Query: 151 DTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 D ++ +S+ Y+ +L I EGC+ C FC++P RG +SR Sbjct: 138 RPDPFIDLLPASAVSLTPRHYS-------YLKISEGCNHACKFCIIPDMRGRLVSRPAHA 190 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVR 262 +V EA +L+ GV E+ ++ Q+ +A+ GLD G + +DL L + VR Sbjct: 191 IVREAERLVAAGVRELLVISQDTSAY---GLDLKHATDKGHRAHITDLARDLGSLGAWVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G +++PYL +P Q +LK M R A + I Sbjct: 248 LHYVYPYPHVRDLIPLMAEG---LVLPYLDIPFQHADPGVLKRMARPAAAAKTLDEIAAW 304 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RS+ PDI + S FIVG+PGETD +F+ +D +D+ + F++ G + + + V Sbjct: 305 RSLCPDITLRSTFIVGYPGETDAEFQVLLDWMDEAQLDRVGCFQFENVKGARANALPDHV 364 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL 440 VK ER K + + A VG+++ V+++ E + + +P + + Sbjct: 365 APEVKQERWERFMLKAQAISEAKLAAKVGRVLPVIVDAVDAEGATCRTMADAPEIDGNLF 424 Query: 441 NSKNH---NIGDIIKVRITDVKISTLYGEL 467 + GDI++V + + L+G L Sbjct: 425 IDEGFEGLTPGDIVEVTVEEAGDYDLWGRL 454 >gi|254511063|ref|ZP_05123130.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacteraceae bacterium KLH11] gi|221534774|gb|EEE37762.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacteraceae bacterium KLH11] Length = 463 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 122/453 (26%), Positives = 200/453 (44%), Gaps = 40/453 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 33 SLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 89 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + E G V+V GC+ AE + I P + V GP Y ++ + + A V Sbjct: 90 ----LVENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHAA------V 136 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D + + L G R + +L I EGC+ C FC++P RG SR V Sbjct: 137 PPD---PNPYVDLLPASGVKLTPRHYS-YLKISEGCNHKCKFCIIPDMRGKLASRPAHAV 192 Query: 211 VDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA KL+DNGV E+ ++ Q+ +N WR + + + +DL L + Sbjct: 193 LREAEKLVDNGVRELLVISQDTSAYGLDRKYDMNPWRDREV---RSHITDLARELGQFDA 249 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A +VL PYL +P Q +LK M R + I Sbjct: 250 WVRLHYVYPYPHVRELIPLMADAGCNVL-PYLDIPFQHAHPDVLKRMARPAAGAKTLDEI 308 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R+ PDI + S FIVG+PGET+ +F+ +D +D+ + F+Y G +++ Sbjct: 309 AAWRATCPDITLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGCFQYENVDGARSNDLP 368 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQS 437 + V VK +R +K + + +A VGQ++EV++++ E + +P + Sbjct: 369 DHVPAEVKQDRWERFMEKAQAISEAKLEAKVGQVLEVIVDEVDSEAATCRTKADAPEIDG 428 Query: 438 VVLNSKNHN---IGDIIKVRITDVKISTLYGEL 467 + + GDI V + + L+G L Sbjct: 429 NLFIDEGFEGLKPGDIATVEVDEAGEYDLWGRL 461 >gi|91773329|ref|YP_566021.1| MiaB-like tRNA modifying enzyme [Methanococcoides burtonii DSM 6242] gi|91712344|gb|ABE52271.1| Radical SAM family protein with UPF0004 and MiaB-like domains [Methanococcoides burtonii DSM 6242] Length = 430 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 126/448 (28%), Positives = 204/448 (45%), Gaps = 25/448 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + + +YGC N S M GYE V+ MD A+++V+NTC ++ +K+ L Sbjct: 2 KVHITTYGCSANQASSEIMIASVRDLGYELVDEMD-AEVVVINTCTVKYTTEQKI---LH 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +I +L I VVV GC+ Q + E IL R+P +++ G + ++ ++L Sbjct: 58 KIEDLGAKGID------VVVTGCMPQVQLETILERNPDAHIL-GVNSIAKIGQVLRSIEN 110 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +V + E + ++R I +GCD C +C+V RG S Sbjct: 111 SCKVGSRERVELITSEPEGFLKTAHSRFNPNIHICQISQGCDYSCAYCIVTIARGKLRSF 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +V++ R +D G EI L Q+ N G D +LL + I G ++R Sbjct: 171 DADSIVEDIRMAVDEGCREIWLTSQD-NGQYGTDRD---VLLPELLRRIVAIPGDFKIRV 226 Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +P ++ D LI+ D + +HLP+QS SD +LK MNR H+ E I+ R+ Sbjct: 227 GMMNPFSVTPILDDLIEVFRS-DKIYKIVHLPIQSASDNVLKKMNRYHSIEEANGIVFRL 285 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-- 380 R PD+ + +D IVGF E+D+DF T++ V + + +Y+PR P + LE Sbjct: 286 REAFPDLTLFTDIIVGFSSESDNDFNMTLEWVKTMKPDKVNISRYTPR---PLTKALEYR 342 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 +D + ER L K ++ +G EV I K KG ++ R+ + VVL Sbjct: 343 NLDTRIVVERSNKLHKLCDTIKLDSKKKMIGWKGEVFISMDAKVKG-VMARTASYKPVVL 401 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + G V I D G ++ Sbjct: 402 PEGSVSPGTSCNVEIYDTTAGYFLGRVL 429 >gi|315635637|ref|ZP_07890900.1| Fe-S oxidoreductase [Arcobacter butzleri JV22] gi|315479934|gb|EFU70604.1| Fe-S oxidoreductase [Arcobacter butzleri JV22] Length = 446 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 117/445 (26%), Positives = 216/445 (48%), Gaps = 31/445 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M Y+ + +AD+I++NTC + A ++ + I +L Sbjct: 16 SLGCTKNLVDSEVMLGRL--SDYQLTDDAQNADVIIVNTCGFIDSAKQES---INTILSL 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ERARFGKR 148 R E ++V+AGC+++ EE+ + P ++V G Y ++ EL+ +R+ F Sbjct: 71 HEDRKNES---VLVMAGCLSERYKEELQKELPEIDVFTGVGDYDKIDELVNEKRSNFTSE 127 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V + + ER+ I Y+ A++ + EGC++ C+FC +P +G SR+L Sbjct: 128 V----FLASETNERV-ITGSSYH------AYVKLSEGCNQACSFCAIPSFKGKLHSRTLQ 176 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V E + L+ G + + + Q+ +++ + LD K L+ + +I+G+ R Sbjct: 177 SLVKEVKALVAKGYVDFSFVSQDSSSFL-RDLDI-KNGLELLIEEVEKIEGIKTARILYL 234 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P + LI D V + Y +P+Q + +LK M R + ++++ ++S +P+ Sbjct: 235 YPSTTTLSLIDKIADSKVFVNYFDMPLQHITPSMLKIMKRGKGVEQLNELMNHMKS-KPN 293 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + + FI G PGET+DDF V+ + +A F YS GT ++VD+ + Sbjct: 294 SFVRTTFIAGHPGETEDDFETLCSYVENFKFDRANVFSYSDEEGTTAETRTDKVDQELID 353 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG--RSPWLQS----VVLNS 442 ER L + + + + VG+ EV I+ +E L+ ++ W S + +N Sbjct: 354 ERAEILGEIISQTTQESLENEVGKTFEVYIDGESEEHEYLLSARKTIWAPSIDGEIYIND 413 Query: 443 KNHNIGDIIKV-RITDVKISTLYGE 466 N G+ IK +I VK++ L G+ Sbjct: 414 NELNEGEQIKFGQIYTVKVTELVGD 438 >gi|325269255|ref|ZP_08135874.1| RNA modification enzyme [Prevotella multiformis DSM 16608] gi|324988484|gb|EGC20448.1| RNA modification enzyme [Prevotella multiformis DSM 16608] Length = 432 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 128/455 (28%), Positives = 210/455 (46%), Gaps = 49/455 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK----VYSFL 84 + GC N+ DS + F + GY + ++ V+NTC E A E+ + F+ Sbjct: 10 TMGCSKNLVDSELIMKQFEANGYHCTHDTKHPQGEIAVINTCGFIEAAKEESINTILEFV 69 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R +N + +R+ V GC++Q +E+ P V+ G Y +L L +A Sbjct: 70 NRKKNGQLNRL--------YVMGCLSQRYKDELEAELPEVDKFYGKFNYKQLLTDLGKA- 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 D + L+ G A++ I EGCD+ C +C +P G S Sbjct: 121 --------DVPACNGVRHLTTP--------GHYAYVKIAEGCDRHCAYCAIPLITGRHHS 164 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R L ++DE R+L+ GV E ++ Q + + G LDG K ++L+ +++I+G+ +R Sbjct: 165 RPLEDILDEVRRLVGQGVKEFQIIEQELTYY-GVDLDG-KHHITELISRMADIEGVEWIR 222 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++P L+ + YL + Q SD +L+ M+R T E +I IR Sbjct: 223 LHYAYPNQFPLDLLDVIAGKPNVCKYLDIAFQHISDHMLERMHRHVTRQETLDLIAEIRR 282 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVD 383 P I + + +VGFPGET++DF V K + + +F YS GT ++ + V Sbjct: 283 RVPGIHLRTTLLVGFPGETEEDFEELKAFVRKTRFERMGAFAYSEEEGTYSATHYQDDVP 342 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436 E VK +R L+ +Q+ + E+ VG I +V+I++ +E +GR SP + Sbjct: 343 EKVKQQRLDELMEIQQGISEE---LESEKVGSIFKVIIDR--REGDYYIGRTEFCSPEVD 397 Query: 437 SVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468 VL K +IG VRIT L+GE+V Sbjct: 398 PEVLVPAKGKALHIGRFYDVRITGSDEFDLFGEIV 432 >gi|284926662|gb|ADC29014.1| putative radical SAM domain family protein [Campylobacter jejuni subsp. jejuni IA3902] Length = 439 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 105/375 (28%), Positives = 188/375 (50%), Gaps = 21/375 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ S GC N+ DS M + YE + AD++++NTC + A ++ + Sbjct: 3 KLYLMSLGCNKNLVDSEIM--LGHLSAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y R+ E++ + Sbjct: 58 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ Y + F+R I+ G + AF+ I EGC++ C+FC +P +G SR Sbjct: 114 -NLFSNSTYLQSENFKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +S ++ E + L+ G + + + Q+ +++ GEK L+ + +IKG+ R Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIGEVEKIKGIRAARI 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P S+ LIK ++ + Y +P+Q SD +LK M R + +++++ ++S Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ + + FIVG PGE++ DF + V G+ + F YS T +M EQV Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVSFK 341 Query: 386 VKAERLLCLQKKLRE 400 V +RL ++K + E Sbjct: 342 VINKRLKIIEKIVNE 356 >gi|325831452|ref|ZP_08164706.1| tRNA methylthiotransferase YqeV [Eggerthella sp. HGA1] gi|325486706|gb|EGC89154.1| tRNA methylthiotransferase YqeV [Eggerthella sp. HGA1] Length = 417 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 120/413 (29%), Positives = 187/413 (45%), Gaps = 48/413 (11%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F V + GC++N +S +G E S ADLIV+NTC + +A +K + R Sbjct: 10 FAVVNLGCKVNRVESDDAAARLALRGVE--TSEASADLIVVNTCTVTGEAEKKTRKAVRR 67 Query: 87 -IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +R ++R V+V GC A + V+VV Q + L + A F Sbjct: 68 ALRANDHAR--------VLVTGCAAAIDAAFYEALDERVSVVGKAQLAQAIDVLFDEAPF 119 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 D + + G+ + GV +Q+GCD CT+C+V RG SR Sbjct: 120 SP---GEDAPLH--------IGSGFRTRVGVK----VQDGCDNACTYCIVHVARGRATSR 164 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL--------------- 250 VV E G EI L G N+ ++ DG + S + Sbjct: 165 PADDVVRECASYARAGAREIVLTGINLGSY----CDGGRRDPSAIRLAALLRRLLDETAD 220 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRR 309 L++ E R R ++ PRD+ D LI D + +LHLP+Q+GS ++L+ M R Sbjct: 221 LHAPGEAPA--RFRVSSIEPRDVDDALIDLLASADGRVCRHLHLPLQAGSSKVLREMARP 278 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + A + +++R+ P +A+S+D I GFPGETD +F+ T+D+ +A+ +F YSP Sbjct: 279 YDAERFVALVERLYRRIPQLALSTDIIAGFPGETDAEFQETLDVARACRFAKIHAFPYSP 338 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 R+GTP + +QV K R L+ E + S G + L+E+ G Sbjct: 339 RIGTPAAERADQVPPAFKEARAAMLRALGDELRASERARRAGTVELALVEEGG 391 >gi|206895107|ref|YP_002247157.1| 2-methylthioadenine synthetase [Coprothermobacter proteolyticus DSM 5265] gi|206737724|gb|ACI16802.1| 2-methylthioadenine synthetase [Coprothermobacter proteolyticus DSM 5265] Length = 424 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 117/447 (26%), Positives = 214/447 (47%), Gaps = 45/447 (10%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQ----GYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + +V++ GC N+ +R +D F+ Q YE V S ++AD+IV+NTC A E+ Sbjct: 5 KIYVETLGCPKNL---VRTQD-FYRQLDYSNYEVVYSPEEADVIVVNTCGFIADAVEESL 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + +++ +E D ++V AGCV G E+++ P+ Y +P Sbjct: 61 TVALQLK-------EEYPDSVLVFAGCVPLRFGTELVQSE-------LPEFDYVVPGFNM 106 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + F + + S++ Y A+++I EGC+ C++C +P G Sbjct: 107 PSAFSEYQGPL---------QTSVLTYPY-------AYVSIAEGCNGRCSYCTIPKFWGS 150 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GL 260 SR ++VDE +L + G+ E+ L+ Q+ AW G L G + + LL +L + + Sbjct: 151 LKSRPAVEIVDEINELYEIGIREVILVSQDTGAW-GTDLYG-RPSLELLLRALRDTQIPW 208 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +RL Y +P +++ L+ A D ++PY +PVQSGSD++L+ M R + + Q + Sbjct: 209 IRLMYV--NPTFITEKLLLAWKDTGRVLPYFDIPVQSGSDKVLRQMRRGYDRNQILQALK 266 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 I V + + +VGFPGET+DD +AT+DL+ + + F Y ++ Sbjct: 267 LIDGVFAENTKRTSIMVGFPGETEDDVQATLDLLIQGEFHHVGVFGYCDEEEADSHKLVP 326 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSV 438 +VD + R + E + + CVG+ + L+E + G++ G++P + + Sbjct: 327 KVDPEIINTRKTATEAVALELHRLWEEKCVGKTYQCLVEASSGSEFIGRIWGQAPEIDGM 386 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465 L G+++++ + K L G Sbjct: 387 FLGKGEVEPGEMVEIVVEKTKPGQLIG 413 >gi|303245617|ref|ZP_07331900.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio fructosovorans JJ] gi|302492880|gb|EFL52745.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio fructosovorans JJ] Length = 432 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 124/423 (29%), Positives = 184/423 (43%), Gaps = 31/423 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD---ADLIVLNTCHIREKAAEKVYSFLGRI 87 S GC N D+ E + + R +DD ADL+V+NTC A E+ +G I Sbjct: 11 SLGCPKNRVDT---ETALGALPF-RTVMVDDPAAADLVVVNTCAFIAPAVEES---VGAI 63 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L + + + V GC+ GEE+ P V++ P +P G+ Sbjct: 64 LELAATIRECSPRPRLAVMGCLPARYGEELREGLPEVDIWGLPTELDLIP--------GR 115 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + R S Y A+L I EGCD C +C +P RG SR + Sbjct: 116 LATALGADADAPAGRRSSTPPSY-------AYLKIAEGCDHACRYCTIPAIRGKLASRPI 168 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++ EA+ LID G E+ L+ Q+V A+ G+ L G K LL L + GL LR Sbjct: 169 DGLITEAKGLIDQGARELVLVAQDVTAY-GRDL-GMKEGLKALLEKLLPLPGLSWLRLLY 226 Query: 268 SHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P +++ L+ G +PY +P Q +L +M R A + I+DR+R Sbjct: 227 LYPSGVTESLLSFLAGAGRPFVPYFDIPFQHVHPEMLAAMARPKAA-DADTIVDRVRKHF 285 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD A+ S FIVG PGE F A + V + F Y GTP + M QV +V Sbjct: 286 PDAALRSTFIVGLPGEKKAHFEALLAFVKRTRLMHVGVFPYHREDGTPAATMPGQVRRDV 345 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSVVLNSKNH 445 K R+ + +E + G EVL++ HG+ G +GR W Q+ ++ + Sbjct: 346 KERRMAAIMAAQKEISADLLERYAGTEQEVLVDAVHGEWPGLHIGRC-WFQAPEIDGVTY 404 Query: 446 NIG 448 G Sbjct: 405 VSG 407 >gi|253565664|ref|ZP_04843119.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265764040|ref|ZP_06092608.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16] gi|251945943|gb|EES86350.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263256648|gb|EEZ27994.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_16] Length = 432 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 119/448 (26%), Positives = 215/448 (47%), Gaps = 35/448 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ GY+ + + ++ V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEQLMRQLEEAGYDVTHDSEKPTGEIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE G+L + V GC+++ +E+ P V+ G + L + L +A Sbjct: 66 -LEFAQEKEEGNLEKLFVMGCLSERYLKELAIEIPQVDKFYGKFNWKGLLQDLGKA---- 120 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER Y A+L I EGCD+ C++C +P G +SR + Sbjct: 121 ------YHEELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPI 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE R L+ NGV E ++ Q + + G+D +K +L+ +SEI G+ +R Sbjct: 168 EEILDEVRYLVSNGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISEIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P + L + + D + Y+ + +Q SD +L+ M R T E ++I++ R Sbjct: 225 YAYPAHFPEELFRVMRERDNVCKYMDIALQHISDNMLQRMRRHVTKKETYRLIEQFRKEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385 P I + + +VG PGET++DF + V K+ + + +F YS GT +N + + + Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFTYSEEEGTYAAANYEDSIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL--- 440 +K RL L + + + VGQ ++V+I++ E G+ SP + VL Sbjct: 345 LKQARLDELMAIQQGISTELSASKVGQKMKVIIDRIEGEYYIGRTEFDSPEVDPEVLIRC 404 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 N IG+ +V++ D L+GE++ Sbjct: 405 EGDNLMIGNFYQVQVIDSDEFDLFGEII 432 >gi|297566746|ref|YP_003685718.1| MiaB-like tRNA modifying enzyme [Meiothermus silvanus DSM 9946] gi|296851195|gb|ADH64210.1| MiaB-like tRNA modifying enzyme [Meiothermus silvanus DSM 9946] Length = 443 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 117/450 (26%), Positives = 217/450 (48%), Gaps = 34/450 (7%) Query: 21 CIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 + P R V++ GC++N +S + + + + V D ADL+V+NTC + A Sbjct: 6 ALSPVRLAVRTLGCKVNQVESDALVGLLRALQPQVVRLEDGADLVVINTCAVTTTAEADA 65 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 + R R + +VV GC A+ +++ + VV LP ++ Sbjct: 66 RKEVRRAR-------RANPQAFIVVTGCYAELAPDQLAELG--ADAVVPNARKAELPRVI 116 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 FG + D E + G V +F+ +Q+GC+ C +C++P RG Sbjct: 117 LE-HFG---LPADPLTTPPNEFWGAGERGL-LNNWVRSFVKVQDGCNAGCAYCIIPRLRG 171 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIK 258 E R+ + EAR L++ GV EI L G + ++RG +G+ G L+ L + Sbjct: 172 RERHRASGDALAEARGLLEAGVQEIVLTGVRLGSYRGHPQGIAG-------LVEELVLMG 224 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 VRL ++ P D L++ + P+LHL +Q+GSDR+LK M RR+ YR+ Sbjct: 225 AKVRL--SSIEPEDTGRELLEVIARYAPRVRPHLHLSLQTGSDRLLKLMGRRYDTTYYRE 282 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++ ++ P A+++D I G P ET+ + + T+ L+ ++ ++ +F Y+PR T ++ Sbjct: 283 LVQMAYALIPGFALTTDVIAGLPTETEAEHQETLALLRELRPSRVHAFTYTPRPKTRAAS 342 Query: 378 MLEQVDENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 + + E K + ++ L ++L +++ +G +EVL+E + +G+ VG +P Sbjct: 343 LPQVPIEERKRRTKEIIALAQELAAGRIAPK---LGSRVEVLLES--RREGQWVGHTPDY 397 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 V+ + G + V++ +++ TL G Sbjct: 398 YEVLADGAGRQ-GQTVWVKVREIRGYTLLG 426 >gi|154148690|ref|YP_001406630.1| hypothetical protein CHAB381_1072 [Campylobacter hominis ATCC BAA-381] gi|153804699|gb|ABS51706.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381] Length = 414 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 107/399 (26%), Positives = 188/399 (47%), Gaps = 27/399 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++K++GC+ N+YDS + G E + AD +++N+C + A V +F+ Sbjct: 2 KIYIKTFGCRTNIYDSELIMAQIARFGGEICKDENLADFVIINSCTVTNGADSDVRNFIY 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R+ V++ GC A +G+E R I V G R+ E L + Sbjct: 62 RMNRAGKK---------VIITGCAALNKGKEFFERGEIFGVF-GMSNKNRIAEFLNK--- 108 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G+R + F+ ++++ + K AF+ IQEGCD C++C++P RG S Sbjct: 109 GERFCELG---NLNFKENALLN---DFKSHTKAFIKIQEGCDFNCSYCIIPSVRGKSRSV 162 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +++E +K+I EI L G N+ ++ G D + +LL L +I GL R+R Sbjct: 163 DENLIIEEVKKIIAGNHTEIVLTGTNIGSY---GKDN-GSSLGELLQKLGKISGLKRIRL 218 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 + P + D + D L +LH+ +Q S ++L M RR+ A + ++ + + Sbjct: 219 GSIEPSQI-DEKFREILDEPWLEKHLHIALQHTSQKMLTIMRRRNKALKDLKLFNEL--A 275 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 A+ +DFIV PGETD+ + + K +F +SPR GT + + + + Sbjct: 276 ERGFALGTDFIVAHPGETDEIWSEALTNFKKFPLTHLHAFIFSPRDGTHSAGLKIETNGI 335 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 +RL LQ +RE + F + + VL+E+ E Sbjct: 336 EAKKRLKTLQSIIRENNLKFRKSHYNNLF-VLVERKNGE 373 >gi|119575831|gb|EAW55427.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c [Homo sapiens] Length = 488 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 117/403 (29%), Positives = 191/403 (47%), Gaps = 49/403 (12%) Query: 53 YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112 ++ + DADL +LN+C ++ A + F I+ + K +V+AGCV QA Sbjct: 22 HQVTENASDADLWLLNSCTVKNPAED---HFRNSIKKAQEENKK------IVLAGCVPQA 72 Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGY 170 + + + ++G Q R+ E++E G V +D RL + +D Sbjct: 73 QPRQDYLKG---LSIIGVQQIDRVVEVVEETIKGHSVRLLGQK-KDNGRRLGGARLDLPK 128 Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 RK + ++I GC CT+C + RG S + ++VD A++ GVCEI L + Sbjct: 129 IRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSE 188 Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHG 282 + A+ G+ + LL+ L E+ G+ Y H +M+ L Sbjct: 189 DTGAY-GRDIG---TNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKIL----- 239 Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342 + + +LH+PVQS SD +L M R + ++++++D ++ P I I++D I GFPGE Sbjct: 240 NHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGE 299 Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL-------- 394 TD DF+ T+ LV++ + F ++ PR GTP + M EQV V ER L Sbjct: 300 TDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKM-EQVPAQVIGERQQVLVTEESFDS 358 Query: 395 -----QKKLREQ-QVSFNDACVGQIIEVLIEKHGKE--KGKLV 429 + EQ V N A +G+++EV I + GK KG+ V Sbjct: 359 KFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 401 >gi|237752883|ref|ZP_04583363.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC BAA-430] gi|229375150|gb|EEO25241.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC BAA-430] Length = 366 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 103/386 (26%), Positives = 190/386 (49%), Gaps = 32/386 (8%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +V Q+ + K++GC+ N++D+ M + + + + +++D++V+N+C + A V Sbjct: 1 MVKQKVYFKTFGCRTNLFDTQVMINAL--KDFAQTPYEEESDIVVVNSCTVTNGADSGVR 58 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 +++ R++N EG + GC Q +G+ +L R +V V G ++ LL+ Sbjct: 59 NYINRLQN-------EGKR--IFFTGCGVQTQGQALLDRG-LVRGVFGHSHKEKINTLLK 108 Query: 142 RARFGKRVVDTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + D+ + + D E L I+ + R AF+ IQEGCD C++C++P R Sbjct: 109 K--------DSSFFLSDDLEYLENDILSDFVGKSR---AFIKIQEGCDFACSYCIIPSVR 157 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G S S +++ + L G E + G N+ +W GK + L+ SL EI Sbjct: 158 GKARSFSQEKILKQVESLAQKGFSEFIITGTNMGSW-GKDFG---LNIATLVESLCEIPL 213 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L RLR + P + + + + +LH+ +Q S ++LK MNR +T + ++ Sbjct: 214 LKRLRIGSLEPSQIDTHFLSVLENPKI-ERHLHIALQHTSPKMLKLMNRYNTFEKDLELF 272 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + + + A+ SDFIVG PGE + + K SF YSPR TP + + Sbjct: 273 NTLS--QKGFALGSDFIVGHPGENKEVWEEAFLNFSKFPLTHLHSFIYSPRDNTPSALLK 330 Query: 380 EQVDENVKAERLLCLQKKLREQQVSF 405 ++++ N+ ER ++ K++E ++F Sbjct: 331 DRINGNIAKERKKQIEGKVQENNLNF 356 >gi|260063507|ref|YP_003196587.1| putative oxidoreductase [Robiginitalea biformata HTCC2501] gi|88782951|gb|EAR14125.1| putative oxidoreductase [Robiginitalea biformata HTCC2501] Length = 434 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 132/458 (28%), Positives = 223/458 (48%), Gaps = 45/458 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSF 83 R V + GC N+YDS + + + V+ + +++V+NTC I E V + Sbjct: 9 NRINVVTLGCSKNLYDSEVLMGQLKASEKDVVHE-GEGNIVVINTCGFIANAKEESVNTI 67 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L +R ++ R+ + V V GC+++ ++ + P V+ G + LP LL Sbjct: 68 LEYVRQKEDGRVDQ-----VFVTGCLSERYKPDLEKEIPDVDAYFGTRD---LPRLL--- 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + DY E ERL+ Y A+L I EGCD+ C+FC +P RG Sbjct: 117 ----KALGADYRHELVGERLTTTPANY-------AYLKIAEGCDRPCSFCAIPLMRGGHR 165 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL-- 260 S+ + +V EA L GV E+ L+ Q++ + GLD +K +DLL +L++++G+ Sbjct: 166 SQPVEDLVREAESLAAKGVKELILIAQDLTYY---GLDLYKKRALADLLRALAKVEGIEW 222 Query: 261 VRLRYT--TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 +RL Y T P D+ + +++A + Y+ +P+Q SD ILKSM R T + ++ Sbjct: 223 IRLHYAFPTGFPMDVLE-VMRAEPKV---CNYIDIPLQHISDPILKSMRRGTTRAKTTRL 278 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++ R P +AI + IVG+PGETD DF + V + + + F YS T N+ Sbjct: 279 LEAFREKVPGMAIRTTLIVGYPGETDADFEILKEWVRETRFERLGCFTYSHEENTHAFNL 338 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434 + V E K R + + + N VG+ +I++ +E G +GR SP Sbjct: 339 EDDVSEATKQARASEIMELQAQISWELNQEKVGKTFRCMIDR--QEGGYFIGRTEFDSPD 396 Query: 435 LQSVV-LNSKNH--NIGDIIKVRITDVKISTLYGELVV 469 + + V +++ H +GD ++R+T+ L GE V Sbjct: 397 VDNEVRVDAAKHYLRVGDFAEIRVTEAGDFDLIGEPVA 434 >gi|220905544|ref|YP_002480856.1| MiaB-like tRNA modifying protein YliG [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869843|gb|ACL50178.1| MiaB-like tRNA modifying enzyme YliG [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 442 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 126/421 (29%), Positives = 192/421 (45%), Gaps = 34/421 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFL 84 + + S GC N DS R+ + V M ADL+ +NTC + A E V + L Sbjct: 11 KVWSLSLGCPKNRVDSERLLGSLGAP-VSHVEHMGRADLVFINTCGFIDPAVRESVRAVL 69 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERA 143 + L K L+ V GC+ G E L P V++ + R P ++ A Sbjct: 70 DAGQRLGRCSKKP----LLAVGGCMVGRYGAENLAEDLPEVDLWLPTADLDRWPGMVAEA 125 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIE 202 + + + GG G + A+L I EGC C FC +P RG Sbjct: 126 ------------LALPTPPVRMPGGGRLLSTGPSYAWLKIGEGCRHKCAFCTIPSIRGGL 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 S +VDEAR L+ GV E+ L+ Q++ AW G D G K LL L+ + GL Sbjct: 174 HSLPAEYIVDEARALLGQGVRELALVAQDLTAW---GADLGMKNGLPSLLEKLAALDGLA 230 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 LR +P ++ L+ D L+PYL +P+Q +L M R A R+++D Sbjct: 231 WLRLLYLYPSGVTPELLALIRDTGAPLLPYLDIPLQHAHPDVLSRMGRPF-AGNPRRVLD 289 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R P A+ + FIVG+PGETD+ F + V++ + F Y GT + + + Sbjct: 290 AVRQNLPHAALRTTFIVGYPGETDEQFESLCRFVEESAFQHVGVFAYQAEDGTEAATLPD 349 Query: 381 QVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQ 436 QV + VK R L+ +Q + E+ ++ A VG ++VL++ H + G GR WLQ Sbjct: 350 QVPDAVKQWRRDTLMDIQADISERLLA---AHVGSRMQVLVDAPHPEWPGLHSGRV-WLQ 405 Query: 437 S 437 + Sbjct: 406 A 406 >gi|256389762|ref|YP_003111326.1| MiaB-like tRNA modifying enzyme YliG [Catenulispora acidiphila DSM 44928] gi|256355988|gb|ACU69485.1| MiaB-like tRNA modifying enzyme YliG [Catenulispora acidiphila DSM 44928] Length = 474 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 129/479 (26%), Positives = 210/479 (43%), Gaps = 57/479 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNS---MDDADLIVLNTCHIREKAAEKVYSFLGRI 87 + GC N DS + S G+E + ++D+IV+NTC E A + L Sbjct: 12 TLGCGRNEVDSEELAARLESAGWELADPDSVPGESDIIVVNTCGFIESAKKTSLETLVAA 71 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 N + VV GCVA+ G+ + P V+ V+ Y + + L+ GK Sbjct: 72 SNAEAK---------VVAVGCVAERYGKRLAEALPEVDAVLSFDDYPDISQRLDDVVRGK 122 Query: 148 RVVDTDYSVEDKFERL-----------SIVDGGYN----------------RKRG----- 175 + ++ D+ L S+V G+ RKR Sbjct: 123 K--HESHTPRDRRRLLPIAPVDRANNSSVVAPGHGIVRQDSEAGLGGSIFLRKRLGGGGP 180 Query: 176 ----VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231 V A L + GCD+ C+FC +P RG ISR+ +V EA L D GV E+ L+ +N Sbjct: 181 LGDGVVAPLKLASGCDRRCSFCAIPSFRGAFISRTPDDIVAEAEWLADAGVRELILVSEN 240 Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 ++ GK G+ LL L+ + VR+ Y P ++ LI+A G + + Y Sbjct: 241 STSY-GKDF-GDLQALEKLLPRLTSLVSRVRISYL--QPAELRPTLIEAIGGIPGVASYF 296 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 L Q S +L+ M R + +++D+IR + P+ + S+FIVGFPGET+DD+ Sbjct: 297 DLSFQHASGPVLRRMRRFGDRERFLELLDKIRVIAPEAGMRSNFIVGFPGETEDDYGEVE 356 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411 V + F YS GT + ++V+++ A+R+ L R+ VG Sbjct: 357 RFVSEARLDAVGVFGYSDEEGTEALGLPDKVEQSQIADRVARLTVISRKAMDDRAAERVG 416 Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQS-VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 IEV+++ G +G ++P + V L + GD+++ R+T + L E + Sbjct: 417 SEIEVIVKHPG--RGWAAHQAPAVDGFVTLTGSSSEAGDVLRARVTGQDGANLIAEALA 473 >gi|319762033|ref|YP_004125970.1| miab-like tRNA modifying enzyme ylig [Alicycliphilus denitrificans BC] gi|317116594|gb|ADU99082.1| MiaB-like tRNA modifying enzyme YliG [Alicycliphilus denitrificans BC] Length = 463 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 128/485 (26%), Positives = 213/485 (43%), Gaps = 58/485 (11%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 +S+ + P+ FV S GC N+ DS + ++GYE + ADL+++NTC Sbjct: 1 MSEALSPTKTPKIGFV-SLGCPKNLTDSELILTQLSAEGYETSKTFQGADLVIVNTCGFI 59 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV-AQAE---GEEILRRSPIVNVVVG 129 + A + +G + + G V+V GC+ A+A+ G + P V V G Sbjct: 60 DDAVRESLDTIGEA-------LADNGK--VIVTGCLGARADDGGGNLVKGVHPNVLAVTG 110 Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQ 183 P E++E V D F L +V G + + G+ A+L I Sbjct: 111 PHAAQ---EVMEH------VHQHLPKPHDPF--LDLVPGTFG-EAGIKLTPRHYAYLKIS 158 Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--------- 234 EGC+ CTFC++P RG +SR + V++EAR L + GV E+ ++ Q+ +A Sbjct: 159 EGCNHRCTFCIIPSMRGDLVSRPIGDVLNEARALFEGGVKELLVVSQDTSAYGVDVKYRT 218 Query: 235 --WRGKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 W GK + L +++ G VRL Y +P + G +++PYL Sbjct: 219 GFWDGKPVRTRLLELVQTLGAIARPYGAWVRLHYVYPYPSVDDIIPLMQEG---LVLPYL 275 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 +P Q +LK M R + + + I R R + P++ + S FI GFPGET+++F + Sbjct: 276 DVPFQHSHPDVLKRMKRPASGEKNLERIQRWREMCPELVVRSTFIAGFPGETEEEFEHLL 335 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411 + + +A F YS G +++ + ++ ER E + VG Sbjct: 336 QFLREAQIDRAGCFAYSNVRGAAANDLPGMLPMELREERRARFMAVAEEVSTARLQRRVG 395 Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQSVVLN-----------SKNHNIGDIIKVRITDVKI 460 Q ++VL++K K W + ++ SK + +GD +KVRI + Sbjct: 396 QTLQVLVDKAVGLGKKGGVGRSWADAPEIDGLVHLLPPEKISKTYKVGDFVKVRIVGTQG 455 Query: 461 STLYG 465 L G Sbjct: 456 HDLVG 460 >gi|145591528|ref|YP_001153530.1| RNA modification protein [Pyrobaculum arsenaticum DSM 13514] gi|145283296|gb|ABP50878.1| RNA modification enzyme, MiaB family [Pyrobaculum arsenaticum DSM 13514] Length = 416 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 147/458 (32%), Positives = 219/458 (47%), Gaps = 60/458 (13%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++++YGC + D+ E + G V +DAD++++ TC +RE + L Sbjct: 3 RAYIETYGCWLAKADA---EIIRQRLGLVAVERPEDADVVMIYTCAVREDGEVRQ---LA 56 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIR L R KE VVVAGC+A+ LR P P P +E + Sbjct: 57 RIRELAGLR-KE-----VVVAGCLAK------LR--PYTIKSAAPNARLLYPSEVEGGQ- 101 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG---IE 202 KR + V ++E GV + +Q GC CTFC YTRG Sbjct: 102 -KR----EMKVLPRYEG------------GVIYTVPLQVGCLGNCTFCATKYTRGGAGYV 144 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---KCTFSDLLYS-LSEIK 258 S + VV ++ + G EI L GQ+V + G D + DLL L E++ Sbjct: 145 KSANPDDVVRHVKEAVARGAKEIYLTGQDVITY---GFDMRWRPGWSLPDLLERILREVE 201 Query: 259 GLVRLRYTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G R+R S P R L GD V Y HLPVQSGSDR+L++M RR+T E Sbjct: 202 GEYRVRIGMSEPWVFARFADRLLDIVKGDRRVYR-YFHLPVQSGSDRVLRAMGRRYTVDE 260 Query: 315 YRQIIDRIRSVRPDIA-ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 YR+++ +IR + A +++D IVGFPGE +DDF ++ LV+++ + ++SPR T Sbjct: 261 YRELVRKIRKTLGEFAFVATDIIVGFPGEAEDDFWESVKLVEELQLDKVHVARFSPRPFT 320 Query: 374 PGSNMLEQVDENVKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 + M QV + K R L + LR ++ N VG VLI++ + G +VGR+ Sbjct: 321 EAAVMPRQVPDAEKKRRSKILSEVSLRVARLR-NGLRVGSRDVVLIDE--VDHGLVVGRA 377 Query: 433 PWLQSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468 + VV+ + + IG +V+I LYG++V Sbjct: 378 SDYRQVVVKRGHGDGLIGQYREVQIVAAGAVYLYGDIV 415 >gi|269127512|ref|YP_003300882.1| MiaB-like tRNA modifying enzyme YliG [Thermomonospora curvata DSM 43183] gi|268312470|gb|ACY98844.1| MiaB-like tRNA modifying enzyme YliG [Thermomonospora curvata DSM 43183] Length = 484 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 125/468 (26%), Positives = 202/468 (43%), Gaps = 43/468 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N DS + G+ V+ A ++V+NTC + A + L + Sbjct: 11 TLGCARNEVDSEELAARLEDAGWTLVDEAGQAGVVVVNTCGFIDAAKKDSIDTL---LAV 67 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR-- 148 +S K VV AGC+A+ G E+ P + V+ Y + E LE G R Sbjct: 68 HDSGAK------VVAAGCLAERYGAELAESLPEADAVLSFDDYAHIGERLEEVLAGIRRP 121 Query: 149 ----------VVDTDYSVEDKFERLSIVDGG-------------YNRKR---GVTAFLTI 182 + T + +K ++I G R+R G A L + Sbjct: 122 AHTPRDRRTLLPITPVARREKARDVAIPGHGELPEGLAPASGPRVLRRRLEGGPVAPLKL 181 Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG 242 GCD+ CTFC +P RG +SR +V+ EA L + GV E+ L+ +N ++ GK L G Sbjct: 182 ASGCDRRCTFCAIPAFRGAYVSRDPQEVLAEAAWLAERGVREVVLVSENSTSY-GKDL-G 239 Query: 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 + LL L+ I G+ R+R + P ++ LI+ + PY L Q S + Sbjct: 240 DLRALEKLLPQLAAIDGIERVRLSYLQPAELRPGLIEVLCTTPGVAPYFDLSFQHASGPV 299 Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L+ M R + +++ RIR PD + S+FIVGFPGET+DD M + + Sbjct: 300 LRRMRRFGDRETFGELLARIRDKAPDAGVRSNFIVGFPGETEDDLEELMAFLSEARLDAI 359 Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH- 421 F YS GT + + ++DE A R+ + E + +G + VL+E+ Sbjct: 360 GVFGYSDEEGTEAAALDGKLDEEEIAHRVAEVSHLAEELTAQRAEERIGTTVRVLLEEQV 419 Query: 422 --GKEKGKLVGRSPWLQSVVL-NSKNHNIGDIIKVRITDVKISTLYGE 466 G +G+ ++P + VL + +G+ + + D + L E Sbjct: 420 EPGVFEGRAEHQAPEVDGTVLVRGRGLAVGEFVTATVVDCEGVDLVAE 467 >gi|239928569|ref|ZP_04685522.1| hypothetical protein SghaA1_10118 [Streptomyces ghanaensis ATCC 14672] Length = 464 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 123/409 (30%), Positives = 185/409 (45%), Gaps = 39/409 (9%) Query: 50 SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA-GC 108 + G+ V +AD+ V+NTC E A + L L+ + +KE G VVA GC Sbjct: 3 ADGWRLVEDAAEADVAVVNTCGFVEAAKKDSVDAL-----LEANDLKEHGRTQAVVAVGC 57 Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYY----RLPELL----------------------ER 142 +A+ G+E+ P + V+G Y RL +L ER Sbjct: 58 MAERYGKELAEALPEADGVLGFDDYTDISDRLQTILSGGIHASHTPRDRRKLLPLSPVER 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYN--RKR---GVTAFLTIQEGCDKFCTFCVVPY 197 G V + D E L+ G R+R A + + GCD+ C+FC +P Sbjct: 118 QAAGASVALPGHGPADLPEGLAPASGPRAPLRRRLDGSPVASVKLASGCDRRCSFCAIPS 177 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG ISR S V++E R L + GV EI L+ +N N GK L G+ LL L+E+ Sbjct: 178 FRGSFISRRPSDVLNETRWLAEQGVKEIMLVSEN-NTSYGKDL-GDIRLLESLLPELAEV 235 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 GL R+R + P +M LI + PY L Q + +L++M R + + Sbjct: 236 DGLERVRVSYLQPAEMRPGLIDVLTSTPKVAPYFDLSFQHSAPGVLRAMRRFGDTDRFLE 295 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++D IRS P + S+FIVGFPGE++ D ++ F YS GT + Sbjct: 296 LLDTIRSRAPQAGVRSNFIVGFPGESEADLAELERFLNHARLDAIGVFGYSDEEGTEAAT 355 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 +++E+V AERL + + E D VG+ + VL+E +E+G Sbjct: 356 YDTKLEEDVVAERLARVSRLAEELVSQRADERVGETVHVLVESVDEEEG 404 >gi|218262360|ref|ZP_03476857.1| hypothetical protein PRABACTJOHN_02531 [Parabacteroides johnsonii DSM 18315] gi|218223426|gb|EEC96076.1| hypothetical protein PRABACTJOHN_02531 [Parabacteroides johnsonii DSM 18315] Length = 244 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 130/212 (61%), Gaps = 10/212 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY + ++DAD I +NTC +R+ A +K+Y L Sbjct: 19 KKLFIETYGCQMNVADSEVVASIMKMDGYAVTDKIEDADAIFVNTCSVRDNAEQKIYGRL 78 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++LK + L++ V GC+A+ EE++ ++VVGP +Y LP L+ Sbjct: 79 QYFQSLKRKK----KTLVIGVLGCMAERVKEELIEVHH-ADLVVGPDSYMDLPNLVGAVE 133 Query: 145 FGKRVVDTDYSVEDKFER-LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G++ ++ + S ++ ++ + + GG + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 134 HGEKAINVELSTQETYKDVIPLKLGGVH----ISGFVSIMRGCNNFCTYCIVPYTRGRER 189 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 SR + +++E R + + G E+TLLGQNVN++ Sbjct: 190 SRDIESILNEIRDMREKGFKEVTLLGQNVNSY 221 >gi|291448192|ref|ZP_06587582.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291351139|gb|EFE78043.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 493 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 129/455 (28%), Positives = 201/455 (44%), Gaps = 56/455 (12%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G++ V DAD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLAADGWDLVEDASDADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 L +LK+ G VV GC+A+ G+++ P + V+G Y + + L Sbjct: 61 VDALLEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116 Query: 141 ER-------------------------------ARFGKRVVDTDYSVEDKFERLSIVDGG 169 + A G + ED E ++ V G Sbjct: 117 QTILNGGIHASHTPRDRRKLLPISPAERQDAAVALPGHAQETPAPAPEDLPEGVAPVSGP 176 Query: 170 ---YNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224 R+ G + A + + GCD+ C+FC +P RG ISR S V+ E R L + GV E Sbjct: 177 RAPLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLQETRWLAEQGVKE 236 Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284 + L+ +N N GK L G+ LL L+++ G+ R+R + P +M LI Sbjct: 237 VMLVSEN-NTSYGKDL-GDIRLLETLLPELADVDGIERIRVSYLQPAEMRPGLIDVLTST 294 Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344 + PY L Q S +L++M R + +++D IRS P S+FIVGFPGET+ Sbjct: 295 PKVAPYFDLSFQHSSPSVLRTMRRFGDTDRFLELLDTIRSKAPQAGARSNFIVGFPGETE 354 Query: 345 DDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399 D T +D IG F YS GT ++D +V AERL + + Sbjct: 355 ADLAELERFLTGARLDAIGV-----FGYSDEEGTEAVGYENKLDADVIAERLAHISQLAE 409 Query: 400 EQQVSFNDACVGQIIEVLIEK-HGKEKGKL-VGRS 432 E + VG+ ++VL+E ++ G++ +GR+ Sbjct: 410 ELTSQRAEERVGETLQVLVESVESEDDGEVAIGRA 444 >gi|84499563|ref|ZP_00997851.1| RNA modification enzyme, MiaB-family protein [Oceanicola batsensis HTCC2597] gi|84392707|gb|EAQ04918.1| RNA modification enzyme, MiaB-family protein [Oceanicola batsensis HTCC2597] Length = 463 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 123/453 (27%), Positives = 201/453 (44%), Gaps = 45/453 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G N Sbjct: 33 SLGCPKALVDSERILTRLRAEGYAISADYAGADAVIVNTCGFLDSAKAESLDAIGEALN- 91 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ AE E I P V V GP Y ++ +++ A Sbjct: 92 ENGR--------VIVTGCLG-AEPEFITGAHPKVLAVTGPHQYEQVLDVVHGAV------ 136 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L G R + +L I EGC+ C FC++P RG SR V Sbjct: 137 ---PPAPDPFIDLLPASGVTLTPRHYS-YLKIAEGCNHKCRFCIIPDMRGRLASRPAHAV 192 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGE-KCTFSDLLYSLSEIK 258 + EA KL++ GV E+ ++ Q+ +A W+G GE + +DL L + Sbjct: 193 LREAEKLVEAGVRELLVISQDTSAYGVDRRHDLSPWKG----GEVRSHITDLARELGGLG 248 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 VRL Y +P + A G + +PYL +P Q L+ M R A Sbjct: 249 AWVRLHYIYPYPHVRELIPLMAEGRV---LPYLDIPFQHAHPDTLRRMARPAAAERTLDR 305 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I RS+ P I + S FIVG+PGET+++F ++ +D+ + FKY G +++ Sbjct: 306 IAEWRSICPGITLRSTFIVGYPGETEEEFSTLLEWMDEAQLDRVGCFKYENVAGARSNDL 365 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVGRSPWL 435 + V + VK ER +K + + A VG + +V+ I++ G + + +P + Sbjct: 366 PDHVPDTVKQERWERFMEKAQAISAAKLAAKVGTVQQVIVDEIDEDGIATCRTMADAPEI 425 Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465 + +++ GDI++V + + L+G Sbjct: 426 DGNLFLDEDTEGLAPGDILEVEVDEASEYDLWG 458 >gi|116331689|ref|YP_801407.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280568|sp|Q04R21|RIMO_LEPBJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|116125378|gb|ABJ76649.1| 2-methylthioadenine synthetase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 439 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 93/367 (25%), Positives = 176/367 (47%), Gaps = 12/367 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++ + GC N DS+ M +G+ +++D +NTC + A E+ + Sbjct: 3 KKFYITTLGCPKNTADSMSMHHSLLEEGFTPATFAEESDFHFINTCTFIQSATEETIQTI 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 L +++K+ +VV GC A+ + I P V++ G Y + ++L R + Sbjct: 63 -----LSAAQVKKQNHQKLVVVGCFAERYPDNISSEIPEVDLFFGTGRYAQAGKIL-REK 116 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 F + E+L + N + A++ + +GC++ C+FC++P RG Sbjct: 117 FPDLSPPKREFNDSLLEKLKLSSEIENYSKPY-AYVKVSDGCNRGCSFCIIPSFRGKFRE 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + ++ + + I G EI L+ Q+ + G + E D++ ++EI L LR Sbjct: 176 SPVEDILRDVDRAIRAGAKEICLVSQDTVYY---GRNSE--VLLDMVRKVAEIDSLEVLR 230 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P ++ L++ G+ + PYL P+Q S +ILKSMNR + ++ + R Sbjct: 231 LLYLYPDKKTEKLLRLMGETPKIAPYLESPLQHVSSKILKSMNRVGESSTFKDLFALARE 290 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 V+P + I + FI+G+PGE D + +++ + F YSP+ GT G+ + + V E Sbjct: 291 VKPGLEIRTSFIIGYPGEEPGDVDQVLRFIEETRPEKVNLFSYSPQEGTKGAELKQTVSE 350 Query: 385 NVKAERL 391 K+ R+ Sbjct: 351 KEKSRRI 357 >gi|124266807|ref|YP_001020811.1| ribosomal protein S12 methylthiotransferase [Methylibium petroleiphilum PM1] gi|238066612|sp|A2SG87|RIMO_METPP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|124259582|gb|ABM94576.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 471 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 138/488 (28%), Positives = 214/488 (43%), Gaps = 84/488 (17%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P+ FV S GC + DS + ++GY+ S ADL+++NTC + A ++ Sbjct: 22 IPKIGFV-SLGCPKALTDSELILTQLRAEGYDTSKSFAGADLVIVNTCGFIDDAVKESLD 80 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE---EILRR-SPIVNVVVGPQTYYRLPE 138 +G +N R V+V GC+ GE ++R+ P V V GP Sbjct: 81 TIGEALA-ENGR--------VIVTGCLGAKAGEGGGNLVRQMHPSVLAVTGPHAT----- 126 Query: 139 LLERARFGKRVVDTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 + V+D + D F L G R A+L I EGC+ C+FC+ Sbjct: 127 --------QEVMDAVHVHVPKPHDPFVDLVPAYGVKLTPRHY-AYLKISEGCNHRCSFCI 177 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGE 243 +P RG +SR + V++EAR L ++GV E+ ++ Q+ +A W GK + Sbjct: 178 IPSMRGDLVSRPIGDVLNEARALFESGVKELLVISQDTSAYGVDVKYRTGFWDGKPV--- 234 Query: 244 KCTFSDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 K +DL+ L E+ VRL Y +P + A G + +PYL +P Q Sbjct: 235 KTRMTDLVERLGELAEPFGAWVRLHYVYPYPHVDEILPMMAGGRV---LPYLDVPFQHAH 291 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +LK M R + + + R R P I + S FI GFPGET+ +F +D + + Sbjct: 292 PDVLKRMKRPANGEKNLERLQRWREACPQIVVRSTFIAGFPGETEAEFEHLLDFMREARI 351 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL--------QKKLREQQVSFNDACVG 411 +A F YSP G + + + E V+ ER +KLRE+ VG Sbjct: 352 DRAGCFAYSPVEGASANALAGALPEAVREERRARFMAVAEAVSAEKLRER--------VG 403 Query: 412 QIIEVLIEKH---GKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDV 458 ++VLI+ GK+ G+ GRS P + VV SK +G+ + RI Sbjct: 404 AEMQVLIDAAPALGKKGGR--GRSYADAPEIDGVVHLLPPQKASKQLRVGEFTRARIVGT 461 Query: 459 KISTLYGE 466 + L G+ Sbjct: 462 QGHDLVGQ 469 >gi|34535972|dbj|BAC87494.1| unnamed protein product [Homo sapiens] Length = 487 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 117/403 (29%), Positives = 191/403 (47%), Gaps = 49/403 (12%) Query: 53 YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112 ++ + DADL +LN+C ++ A + F I+ + K +V+AGCV QA Sbjct: 22 HQVTENASDADLWLLNSCTVKNPAEDH---FRNSIKKAQEENKK------IVLAGCVPQA 72 Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGY 170 + + + ++G Q R+ E++E G V +D RL + +D Sbjct: 73 QPRQDYLKG---LSIIGVQQIDRVVEVVEETIKGHSVRLLGQK-KDNGRRLGGARLDLPK 128 Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 RK + ++I GC CT+C + RG S + ++VD A++ GVCEI L + Sbjct: 129 IRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSE 188 Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHG 282 + A+ G+ + LL+ L E+ G+ Y H +M+ L Sbjct: 189 DTGAY-GRDIG---TNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKIL----- 239 Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342 + + +LH+PVQS SD +L M R + ++++++D ++ P I I++D I GFPGE Sbjct: 240 NHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGE 299 Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL-------- 394 TD DF+ T+ LV++ + F ++ PR GTP + M EQV V ER L Sbjct: 300 TDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKM-EQVPAQVIGERQQVLVTEESFDS 358 Query: 395 -----QKKLREQ-QVSFNDACVGQIIEVLIEKHGKE--KGKLV 429 + EQ V N A +G+++EV I + GK KG+ V Sbjct: 359 KFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 401 >gi|261879550|ref|ZP_06005977.1| MiaB family RNA modification enzyme [Prevotella bergensis DSM 17361] gi|270333776|gb|EFA44562.1| MiaB family RNA modification enzyme [Prevotella bergensis DSM 17361] Length = 443 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 123/449 (27%), Positives = 212/449 (47%), Gaps = 29/449 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ D+ + F + GY V+ ++ V+NTC + A E+ + + Sbjct: 10 TMGCSKNLVDTEHLMRQFENLGYRCVHDPQRVQGEIAVVNTCGFIDAAKEESINTILEFA 69 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 KN EG + V GC++Q +E+ + P V+ G + +LL+ + Sbjct: 70 EAKN----EGRLKRLYVMGCLSQRYQDELEKTIPEVDRFYGK---FNFKQLLQDLGPSED 122 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 D+D + + LS RK A++ I EGCD+ C +C +P G SR Sbjct: 123 PKDSDALFTQRRKELSA-----GRKLTTPRHYAYIKIAEGCDRHCAYCAIPLMTGRHTSR 177 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S+ +++E ++L+ GV E ++ Q + + G +DG K ++L+ +++I G+ +R Sbjct: 178 SMEDILEEVKQLVAEGVKEFQIIEQELTYY-GVDIDG-KPRIAELISRMADIPGVKWIRL 235 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P L+ + + YL + +Q SD +L M R + E ++I +IR Sbjct: 236 HYAYPNQFPLELLDVMREKPNVCKYLDIALQHISDHVLSRMLRHVSKAETLELIRKIRQE 295 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDE 384 P I + + +VGFPGET++DF+ +D V ++ + + +F YS GT + E V Sbjct: 296 VPGITLRTTLMVGFPGETEEDFQELLDFVREVRFERMGAFVYSEEEGTYSALHYEDDVPA 355 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL 440 VK RL L ++ A +G+ +V+I++ KE VGR SP + VL Sbjct: 356 EVKQRRLDELMAVQQDISAEIQAAKIGKTFKVIIDR--KEGNYYVGRTEASSPEVDPEVL 413 Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGE 466 +N G +V+ITD LYGE Sbjct: 414 IPVGKRNLRTGCFYEVKITDSDEFDLYGE 442 >gi|76802239|ref|YP_327247.1| hypothetical protein NP3198A [Natronomonas pharaonis DSM 2160] gi|76558104|emb|CAI49690.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160] Length = 414 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 117/454 (25%), Positives = 208/454 (45%), Gaps = 55/454 (12%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + +++YGC N +S ++E G+ RV++ + AD+ +LNTC + EK + L R Sbjct: 4 YHIETYGCTSNRGESRQIERKLRDAGHYRVDTPEKADVAILNTCTVVEKTER---NMLRR 60 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-------ILRRSPIVNVVVGPQTYYRLPEL 139 L+ E DL +V GC+A A+G+E +L + V + P+ Sbjct: 61 AEELE----AETADL--IVTGCMALAQGDEFGDIDAQVLHWEDVPTAVTNGECPTTTPD- 113 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + V+D GV L I GC C++C+ + Sbjct: 114 ------AEPVLD-----------------------GVVGILPIARGCMSNCSYCITKFAT 144 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G S +++ V++AR L+ G E+ + GQ+ + G D + +LL + +I G Sbjct: 145 GRVDSPPVAENVEKARALVHAGAKELRITGQDTGVY---GWDTGERKLPELLDRICDIDG 201 Query: 260 LVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 R+R ++P + + L + + L ++H PVQSGSD +L+ M R+H +++ Sbjct: 202 EFRVRLGMANPGGVHGIHEELADVFAENEKLYNFIHAPVQSGSDDVLEDMRRQHRVEKFK 261 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 I+D +S+DFIVGFP E + D +M+L+ ++ + ++S R GT + Sbjct: 262 DIVDAFDERLDHWTLSTDFIVGFPTEDEADHELSMELLAEVRPEKINVTRFSKRPGTDAA 321 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 +M + + +K ER + + + VG+ EVL+ + G + Q Sbjct: 322 DM-KGLGGTIKKERSKAMTDLKMDICREVYGSMVGETREVLVVEQGTGDSVKCRDEAYRQ 380 Query: 437 SVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 +V ++ H+I GD++ V ITD + +GE V Sbjct: 381 VIVTDATEHDIDPGDMLDVTITDSETVYCFGEPV 414 >gi|114605656|ref|XP_001171067.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] Length = 488 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 117/403 (29%), Positives = 191/403 (47%), Gaps = 49/403 (12%) Query: 53 YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112 ++ + DADL +LN+C ++ A + F I+ + K +V+AGCV QA Sbjct: 22 HQVTENASDADLWLLNSCTVKNPAED---HFRNSIKKAQEENKK------IVLAGCVPQA 72 Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL--SIVDGGY 170 + + + ++G Q R+ E++E G V +D RL + +D Sbjct: 73 QPRQDYLKG---LSIIGVQQIDRVVEVVEETIKGHSVRLLGQK-KDNGRRLGGARLDLPK 128 Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 RK + ++I GC CT+C + RG S + ++VD A++ GVCEI L + Sbjct: 129 IRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSE 188 Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHG 282 + A+ G+ + LL+ L E+ G+ Y H +M+ L Sbjct: 189 DTGAY-GRDIG---TNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKIL----- 239 Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342 + + +LH+PVQS SD +L M R + ++++++D ++ P I I++D I GFPGE Sbjct: 240 NHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGE 299 Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCL-------- 394 TD DF+ T+ LV++ + F ++ PR GTP + M EQV V ER L Sbjct: 300 TDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKM-EQVPAQVIGERQQVLVTEESFDS 358 Query: 395 -----QKKLREQ-QVSFNDACVGQIIEVLIEKHGKE--KGKLV 429 + EQ V N A +G+++EV I + GK KG+ V Sbjct: 359 KFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 401 >gi|260592452|ref|ZP_05857910.1| RNA modification enzyme, MiaB-family [Prevotella veroralis F0319] gi|260535498|gb|EEX18115.1| RNA modification enzyme, MiaB-family [Prevotella veroralis F0319] Length = 433 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 121/459 (26%), Positives = 210/459 (45%), Gaps = 57/459 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK----VYSFL 84 + GC N+ DS + +F GY + ++ V+NTC E A E+ + F+ Sbjct: 10 TMGCSKNLVDSEIIMKLFEENGYHCTHDAKRPQGEIAVINTCGFIEAAKEESINTILEFI 69 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R +N + +R+ V GC++Q +E+ P V+ G Y +L L +A Sbjct: 70 NRKKNGQLNRL--------YVMGCLSQRYKDELEAELPEVDKFYGKFNYKQLLTDLGKAS 121 Query: 145 F----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G R + T A++ I EGCD+ C +C +P G Sbjct: 122 IPSCNGTRHLTTPRHY---------------------AYIKIAEGCDRHCAYCAIPLITG 160 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR + ++++E + L+ GV E ++ Q + + G LDG K ++L+ +++IKG+ Sbjct: 161 RHHSRPIDEILNEVKDLVVQGVKEFQIIEQELTYY-GVDLDG-KHHITELISRMADIKGV 218 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++P L+ D + YL + Q SD +L M+R T E +I Sbjct: 219 KWIRLHYAYPNQFPLDLLDVIAKKDNVCKYLDIAFQHISDNMLTRMHRHVTKQETLDLIR 278 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNML 379 IR P I + + +VGFPGET++DF + V + + + +F YS GT ++ Sbjct: 279 EIRCRVPGIHLRTTLLVGFPGETEEDFEELKEFVTEARFERMGAFAYSEEEGTYSATHYK 338 Query: 380 EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 + V E VK R L+ +Q+ + E+ VG++ +V+I++ KE +GR+ + Sbjct: 339 DDVPEEVKQSRLDELMAIQQGISEE---LEAEKVGKVFKVIIDR--KEGEYYIGRTEYCS 393 Query: 437 S-------VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++++ K IG+ VRIT L+GE+ Sbjct: 394 PEVDPEVLILVSEKQLRIGNFYNVRITGSDEFDLFGEIA 432 >gi|110598860|ref|ZP_01387113.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] gi|110339521|gb|EAT58043.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] Length = 433 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 127/450 (28%), Positives = 212/450 (47%), Gaps = 37/450 (8%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGR 86 F+ S GC N DS R+ + G + D+AD I++NTC E A E+ + L Sbjct: 9 FLLSLGCSKNTVDSERLMAQAEASGITFTETADEADTILINTCAFIEDAKEESIAETLAA 68 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 I + EG V + GC+ + +E+ V+ G + LPE+L A G Sbjct: 69 I-----GKKTEGKVQRVYMMGCLTELYRKELHEEMEEVDGFFGTR---ELPEVL--AALG 118 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 E+ ++R S++ + A+L I EGC++ C+FC +P RG IS+ Sbjct: 119 A------VYREEFYDRRSLLTPPH------YAYLKIAEGCNRACSFCSIPKIRGRYISQP 166 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRY 265 Q++ EA L GV E+ ++ Q+++ + G L+G K +DL+ LS+++ +RL Y Sbjct: 167 PEQLLREAALLKSAGVRELNVIAQDISLY-GYDLEG-KSLLNDLVLRLSDMEFDWIRLFY 224 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P +I + + YL +P+Q G+DRIL+SMNR E ++I+ IR Sbjct: 225 --AYPVGFPLEVIDTMHERANICNYLDIPLQHGNDRILRSMNRGINKAETIKLIETIREK 282 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDI + + I G+PGET ++F + V++ + + F Y P + E + Sbjct: 283 NPDIRLRTTMIAGYPGETREEFEELLQFVEESRFDRLGCFPYCHEEHAPSFKLEESLTME 342 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV------ 439 K ER+ L + N G+ I+VLI++ E +GR+ + V Sbjct: 343 EKRERVAELMELQESISAENNRVFEGKTIKVLIDQ--IEADTALGRTEYDAPEVDNECIL 400 Query: 440 -LNSKNHNIGDIIKVRITDVKISTLYGELV 468 LN++ +G ITD L+G ++ Sbjct: 401 DLNNQPVTVGSFCMAEITDSGAYELHGRVI 430 >gi|330836973|ref|YP_004411614.1| MiaB-like tRNA modifying enzyme [Spirochaeta coccoides DSM 17374] gi|329748876|gb|AEC02232.1| MiaB-like tRNA modifying enzyme [Spirochaeta coccoides DSM 17374] Length = 453 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 130/461 (28%), Positives = 210/461 (45%), Gaps = 61/461 (13%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V + GC++N + + F ++G + V ADL V+NTC + KA +K R Sbjct: 5 VYTLGCRLNQTEGEAIAQAFAAEGCDVVQDDMSADLYVVNTCTVTSKAEQKA-------R 57 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP----QTYYRLPELL-ERA 143 + E +VVV GC AQ +G +I + +VV P LP + R Sbjct: 58 RMIRKYASEPHAPVVVVTGCYAQMDGTDIAALA--ARIVVFPLDKKAALLALPRFMTPRI 115 Query: 144 RFGKRVVDT--DYS--VEDKFERLSIVDGGYNRKRGV------------TAFLTIQEGCD 187 G +D +++ V + L GG ++ V A+L +Q+GCD Sbjct: 116 HSGDSPLDICREFAELVPAQLAALHAKSGGEGKEPSVFDYAPDTFLHNQRAYLKVQDGCD 175 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN--AWRGKGLDG--E 243 C FC V RG + + +VV L G E+ L G N+ ++G+GL E Sbjct: 176 NACAFCRVHVARGKAVDLNADEVVRRVMHLERQGFHEVVLTGVNLTMYGYKGEGLGALVE 235 Query: 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 K L I +R+R ++ P + L+ D + PY H+PVQS + ++L Sbjct: 236 KI--------LEHIGSDMRIRLSSLEPDHVDGRLLDTLHD-PRMQPYFHIPVQSANQKVL 286 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 +NR ++ +IDR+R ++ D I++D I G P E D +F+ T D + G+A+ Sbjct: 287 YRINRHYSVEHLAWVIDRLRDIKDDPCIAADIIAGLPAEYDAEFQETYDFLKNKGFARLH 346 Query: 364 SFKYSPRLGTPGSNMLEQVDENVKAERL-------LCLQKKLREQQVSFNDACVGQIIEV 416 F +SPR TP ++V E+V+ ER CL K+ +Q G+ EV Sbjct: 347 VFPFSPRPDTPLYQARDRVPESVRDERAARLRELSACLLKEYSARQ-------EGREAEV 399 Query: 417 LIEKHGKEKGKLVGRS-PWLQSVVLNS-KNHNIGDIIKVRI 455 ++E+ K+ G G + +L++ V S ++ GD+ KV I Sbjct: 400 ILEQ--KKDGWWNGLTGNYLRARVEGSPQDARPGDLFKVVI 438 >gi|222480620|ref|YP_002566857.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC 49239] gi|222453522|gb|ACM57787.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC 49239] Length = 434 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 115/454 (25%), Positives = 206/454 (45%), Gaps = 57/454 (12%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 + +++YGC N +S +E G+ + +DAD+ +LNTC + EK + L R Sbjct: 4 YHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTER---NMLRR 60 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGE---------EILRRSPIVNVVVGPQTYYRLP 137 L++ + +VV GC+A A+G+ EIL + + V+ + P Sbjct: 61 AEELEDVTAE------LVVTGCMALAQGDAFREAGVDAEILHWDEVPSHVLNGECPTVTP 114 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 + + V+D GV L I GC C++C+ + Sbjct: 115 D-------AEPVLD-----------------------GVVGILPIARGCMSNCSYCITKF 144 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 G S ++ + V++AR L+ G EI + GQ+ + G D +LL + +I Sbjct: 145 ATGRVDSPTVEENVEKARALVHAGAKEIRVTGQDTGVY---GWDNGDRKLPELLDRICDI 201 Query: 258 KGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G R+R ++P + + L + D + L ++H PVQSGSD +L+ M R+H + Sbjct: 202 DGDFRVRLGMANPGGIHGIHEELAEVFADNEELYDFIHAPVQSGSDDVLEDMRRQHRVEK 261 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +R++++ +S+DFIVGFP ET+ D +MDL+ ++ + ++S R GT Sbjct: 262 FREVVETFDDRLDHWTLSTDFIVGFPTETEADHERSMDLLAEVRPEKINVTRFSKRPGTD 321 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 ++M + + +K ER + + E ++ VG+ EVL+ + G + Sbjct: 322 AADM-KGLGGTIKKERSKAMSELKMEVVGDAYESMVGETFEVLVVEEGTGDSVKCRDGAY 380 Query: 435 LQSVVLNSKNHN--IGDIIKVRITDVKISTLYGE 466 Q +V N+ +GD ++V +T +GE Sbjct: 381 RQIIVQNAAERGVAVGDFLEVEVTGHNTVYAFGE 414 >gi|217978009|ref|YP_002362156.1| MiaB-like tRNA modifying enzyme [Methylocella silvestris BL2] gi|217503385|gb|ACK50794.1| MiaB-like tRNA modifying enzyme [Methylocella silvestris BL2] Length = 433 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 114/405 (28%), Positives = 179/405 (44%), Gaps = 49/405 (12%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S+GC++N+ +S M G E +LI++NTC + +A + Sbjct: 12 VASFGCRLNLVESEAMRRAAEKAGRE--------NLIIVNTCAVTAEATRQARQ------ 57 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +E ++V GC A+ + P ++ ++PE+ + Sbjct: 58 -AIRRIRRERPSAEIIVTGCAAE----------------IDPGSFSQMPEVSRVLGNAGK 100 Query: 149 VVDTDYSVEDKFERLSIVD--GGYN-RKRGVT----AFLTIQEGCDKFCTFCVVPYTRGI 201 ++ + E SI++ G N GV AFL +Q GCD CTFC++P+ RG Sbjct: 101 SDAAAWASAEPVEAQSIMNAAGPLNIPAEGVEDHTRAFLAVQTGCDHRCTFCIIPFARGP 160 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGL 260 S ++ R+L D G EI L G ++ ++ G D L+ + L L Sbjct: 161 SRSSPAEAILASVRRLTDQGFREIVLTGVDLTSY---GQDLGDIRLGGLVKAILKAAPEL 217 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 RLR ++ + L A + L P+LHL +Q+G D ILK M RRH + ++ Sbjct: 218 ERLRLSSIDCIEADADLFSAFAEEPRLAPHLHLSLQAGDDMILKRMKRRHLRADAVRLCA 277 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++ +RPDI +D I GFP ET+ F T L++ G A F +SPR GTP + M Sbjct: 278 ELKRLRPDIVFGADLIAGFPTETEAMFENTASLIEDCGLAYLHVFPFSPRPGTPAAKMPA 337 Query: 381 QVDENVK--AERL-LCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 VK A RL L + L + +G+ + VL E+ G Sbjct: 338 VAPTLVKQRAARLRLAGETALARHHATK----IGKTLRVLTERGG 378 >gi|320008186|gb|ADW03036.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces flavogriseus ATCC 33331] Length = 492 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 129/454 (28%), Positives = 203/454 (44%), Gaps = 55/454 (12%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G++ V + DAD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLAADGWDLVENATDADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----------- 129 L +LK+ G VV GC+A+ G+++ P + V+G Sbjct: 61 VDALLEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116 Query: 130 -------------PQTYYRLPELLERARFGKRVVDTDYSVE------DKFERLSIVDGG- 169 P+ +L + R V ++ E D E ++ V G Sbjct: 117 QTILNGGIHASHTPRDRRKLLPISPAERQDAAVALPGHAQEITPAPADLPEGIAPVSGPR 176 Query: 170 --YNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225 R+ G + +++ GCD+ C+FC +P RG +SR S V+ E R L + GV E+ Sbjct: 177 APLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFVSRRPSDVLGETRWLAEQGVKEV 236 Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285 L+ +N N GK L G+ LL L+++ G+ R+R + P +M LI Sbjct: 237 MLVSEN-NTSYGKDL-GDIRLLETLLPELADVDGIERIRVSYLQPAEMRPGLIDVLTSTP 294 Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345 + PY L Q + ++L+SM R + +++D IRS P S+FIVGFPGET+ Sbjct: 295 KVAPYFDLSFQHSAPKVLRSMRRFGDTDRFLELLDTIRSKAPQAGARSNFIVGFPGETEA 354 Query: 346 DFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400 D T +D IG F YS GT ++D +V AERL + + E Sbjct: 355 DVAELERFLTGARLDAIGV-----FGYSDEDGTEAVGYENKLDADVIAERLAHISQLAEE 409 Query: 401 QQVSFNDACVGQIIEVLIEK-HGKEKGKL-VGRS 432 + VG+ ++VL+E +E G + VGR+ Sbjct: 410 LTSQRAEERVGETLQVLVESVEDEEDGPVAVGRA 443 >gi|328885447|emb|CCA58686.1| Ribosomal protein S12p methylthiotransferase [Streptomyces venezuelae ATCC 10712] Length = 497 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 132/490 (26%), Positives = 210/490 (42%), Gaps = 64/490 (13%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G+E V + +DAD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLAADGWELVENAEDADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 L +LK+ G VV GC+A+ G+E+ P + V+G Y + L Sbjct: 61 VDALLEANDLKD----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYSDISNRL 116 Query: 141 ERARFG----------KRVVDTDYSVEDKFERLSIVDGGYN------------------- 171 + G +R + VE + ++ G+ Sbjct: 117 QTILSGGSVEAHTPRDRRKLLPLSPVERQEAAAAVALPGHGDAAEAPAEAPADLPEGIAP 176 Query: 172 --------RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220 R+R A + + GCD+ C+FC +P RG +SR S V++E R L + Sbjct: 177 ASGPRAPLRRRLDTSPVASVKLASGCDRRCSFCAIPSFRGSFVSRRPSDVLNETRWLAEQ 236 Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280 GV E+ L+ +N N GK L G+ LL L+ + G+ R+R + P +M LI Sbjct: 237 GVKEVMLVSEN-NTSYGKDL-GDIRLLESLLPELAAVDGIERVRVSYLQPAEMRPGLIDV 294 Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340 + ++PY L Q + +L++M R + +++ IR P S+FIVGFP Sbjct: 295 LTSTEKVVPYFDLSFQHSAPDVLRAMRRFGDTDRFLELLASIREKAPTAGARSNFIVGFP 354 Query: 341 GETDDDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395 GET+ DF T +D IG F YS GT + ++D+ V RL L Sbjct: 355 GETEADFAELERFITHARLDAIGV-----FGYSDEDGTEAAGYEHKLDQEVVDARLAHLS 409 Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS-----VVLNSKNHNIGDI 450 + E + +G+ +EVL+E E G ++GR+ VVL + D+ Sbjct: 410 RLAEELTAQRAEERIGETLEVLVESVDDEDG-VIGRAAHQAPETDGQVVLTTAGGASPDL 468 Query: 451 IKVRITDVKI 460 R+ K+ Sbjct: 469 APGRMVVAKV 478 >gi|34540013|ref|NP_904492.1| hypothetical protein PG0150 [Porphyromonas gingivalis W83] gi|81417873|sp|Q7MXM3|RIMO_PORGI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|34396324|gb|AAQ65391.1| conserved hypothetical protein TIGR01125 [Porphyromonas gingivalis W83] Length = 434 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 131/462 (28%), Positives = 211/462 (45%), Gaps = 52/462 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA----DLIVLNTC-HIREKAAEKV 80 R V + GC N+ DS + F S GY D A +++V+NTC I + E V Sbjct: 5 RVDVITLGCSKNLVDSEVLMRQFLSNGY--TVHHDPASVCGEIVVVNTCGFIGDAQEESV 62 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 + L + K RI G L V+ GC+++ E++ + P V+ G + +L L Sbjct: 63 NTILEMVEAKKAGRI---GSLYVM--GCLSERFREDLKKEIPEVDAYYGKFDWKQLISHL 117 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVP 196 ++ + + NR++ T A+L I EGCD+ C++C +P Sbjct: 118 GKSYYAE---------------------AENRRKLTTPRHYAYLKISEGCDRSCSYCAIP 156 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLS 255 G SR + +V+E R L+ +G E L+ Q++ + GLD ++L LS Sbjct: 157 IITGRHRSRPMEDLVEEVRMLVKHGTREFQLIAQDLTFY---GLDLYGANRLAELTARLS 213 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 +IKG+ LR ++P L+ + + YL + +Q SD +L M RR T E Sbjct: 214 DIKGVEWLRLHYAYPAQFPLDLLPVMRERPNVCKYLDMALQHISDPMLGRMRRRITKAET 273 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP- 374 ++I+RIR+ P I + + + G PGET+ DF + V I + + +F YS GT Sbjct: 274 YELIERIRTEVPGIHLRTTLMTGHPGETERDFEELLQFVRDIRFERLGAFTYSHESGTYC 333 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--- 431 N + + E+VK ERL L + N+A +G + V+I++ E G VGR Sbjct: 334 DKNYQDDIPESVKQERLGELMAVQERISAAHNEAKIGSRLHVVIDR--AEDGFYVGRTEY 391 Query: 432 -SPWLQSVVL----NSKNHNIGDIIKVRITDVKISTLYGELV 468 SP + VL + + N G +T + LY +V Sbjct: 392 DSPEVDPEVLIPFVSGQELNPGRFYMAEVTGAEPFDLYARIV 433 >gi|121610173|ref|YP_997980.1| ribosomal protein S12 methylthiotransferase [Verminephrobacter eiseniae EF01-2] gi|238055295|sp|A1WMV5|RIMO_VEREI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|121554813|gb|ABM58962.1| MiaB-like tRNA modifying enzyme YliG [Verminephrobacter eiseniae EF01-2] Length = 462 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 134/475 (28%), Positives = 210/475 (44%), Gaps = 73/475 (15%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + S GC + DS + ++GYE + ADL+++NTC + A ++ +G Sbjct: 11 RIGMVSLGCPKALTDSELILTQLSAEGYETSKTFQGADLVIVNTCGFIDDAVKESLDTIG 70 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQ---AEGEEILRR-SPIVNVVVGPQTYYRLPELLE 141 + E G V+V GC+ A+G ++R+ P V V GPQ ++ + + Sbjct: 71 EA-------LAENGK--VIVTGCLGARTGADGGNMVRQLHPSVLAVTGPQATQQVLDAVH 121 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT---------AFLTIQEGCDKFCTF 192 R D F + +V GG G+ A+L I EGC+ CTF Sbjct: 122 R---------NLPKPHDPF--IDLVPGGM----GIAGLKLTPRHYAYLKISEGCNHRCTF 166 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLD 241 C++P RG +SR + V++EAR L GV E+ ++ Q+ +A W G+ L Sbjct: 167 CIIPTLRGALVSRPIGAVLNEARALFAGGVKELLVISQDSSAYGVDMQYRTGFWDGQPLK 226 Query: 242 GEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300 L +L+E G VRL Y +P D LI VL PYL +P+Q Sbjct: 227 TRLLELVQALGALAEPYGAWVRLHYVYPYPS--VDALIPLMAQGRVL-PYLDVPLQHSHP 283 Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 +L+ M R + + I R R V P+I I S FIVGFPGET +F +D + Sbjct: 284 EVLRRMKRPASGERNLERIQRWREVCPEIVIRSSFIVGFPGETQAEFEHLLDFLRAARID 343 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVL 417 + F YS G +++ + ++ E R + + + L ++ VG ++VL Sbjct: 344 RVGCFAYSDVSGAVANDLPGMLPMPLRQERRARFMAVAEALSSAKLQRR---VGATMQVL 400 Query: 418 IEKH---GKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRITDVK 459 I+ G++ G VGRS P + V SK +G+ + RI V+ Sbjct: 401 IDAAPGLGRKGG--VGRSYADAPEIDGAVHLLPPEKISKTLKVGEFTQARIVGVR 453 >gi|158521760|ref|YP_001529630.1| MiaB-like tRNA modifying enzyme [Desulfococcus oleovorans Hxd3] gi|158510586|gb|ABW67553.1| MiaB-like tRNA modifying enzyme [Desulfococcus oleovorans Hxd3] Length = 451 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 127/443 (28%), Positives = 208/443 (46%), Gaps = 31/443 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F +K+ GC++N ++S + S+G+ ++ ADL ++NTC + + A + Sbjct: 2 KSFIIKTLGCKVNQFESEAIAAALISEGWCLADAGGPADLCIVNTCTVTSRGAMQSRQ-- 59 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 L +E +V+ GC A EE L + V+ +V YR+PE + Sbjct: 60 -----LLRRLRREHPFAMVLATGCHATLNAEE-LAATGAVDCIVYHCAKYRIPETVRSME 113 Query: 145 FG------KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 R+VD D F RLS R R AFL IQ+GC+ FC +C+VP+ Sbjct: 114 DAFTPGGPVRIVDQGER-RDLFTRLSPAAVTGFRTR---AFLRIQDGCNAFCAYCIVPHA 169 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEI 257 RG +S + +V+ L +G E+ L G ++ + G D + +LL ++ Sbjct: 170 RGPSVSMTPDRVMAALAALDADGRREVVLAGIHLGLY---GADLSPSVSLLELLTTVVRR 226 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 + + RLR ++ P +++D L+ D++ + HLP+QSGS+ +L M R +TA Y Sbjct: 227 RLVSRLRLSSIEPCELTDDLLDLAAGTDMICDHFHLPLQSGSNDVLGRMGRPYTAEVYAD 286 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + +R P AI +D +VGFPGET F T LV+ + + F +S R GT + Sbjct: 287 RVAAVRKRVPHAAIGADVLVGFPGETAALFEETFCLVETLPVSYLHVFPFSSRPGTRAAA 346 Query: 378 MLEQVDENVKAERLLCLQKKLR----EQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432 M D V AE + +LR E++ F +++ L+E+ K G L S Sbjct: 347 M----DNPVPAEEIKSRCARLRNLGAEKKRIFCQNNYERMVPALVEETPDRKTGLLKAVS 402 Query: 433 PWLQSVVLNSKNHNIGDIIKVRI 455 SV++ G ++ VRI Sbjct: 403 TNYLSVLVKGPEALRGQLVNVRI 425 >gi|302528498|ref|ZP_07280840.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. AA4] gi|302437393|gb|EFL09209.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. AA4] Length = 485 Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 128/472 (27%), Positives = 208/472 (44%), Gaps = 56/472 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSF 83 +R + + GC N DS + + G+E +D+D++V+NTC E A + V + Sbjct: 15 RRVSLVTLGCARNEVDSEELAGRLAAGGWELAAEPEDSDVVVVNTCGFVESAKKDSVDTL 74 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L + VV GC+A+ G E+ P + V+G Y L L+ Sbjct: 75 LAAADTGRK----------VVAVGCMAERYGNELADSLPEADAVLGFDHYADLSARLDDV 124 Query: 144 RFGKRVVDTDYSVEDKFERLSIVD---------------GGYN----RKR---GVTAFLT 181 G+ + S K +S V G+ R R A L Sbjct: 125 VAGRTIAAHTPSDRRKLLPISPVQRPAAATEVEVPGHAQHGWGPRVLRTRLDDSPVAALK 184 Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK--G 239 I GCD+ C+FC +P RG +SR ++V EA L +NG E+ L+ +N ++ GK G Sbjct: 185 IASGCDRRCSFCAIPSFRGSFVSRQPDEIVAEAAWLAENGAKELFLVSENSTSY-GKDFG 243 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 DG + LL L+ I G+ R+R + P + L+KA + Y L Q S Sbjct: 244 RDGTRA-LELLLPRLAGIDGIERVRVSYLQPAETRPQLVKAIATTPGVADYFDLSFQHSS 302 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-----TMDLV 354 +++L+ M R + + + ++IR P+ I ++ IVGFPGET+DD T + Sbjct: 303 EQVLRRMRRFGSTDSFLALTEQIREYSPEAGIRTNVIVGFPGETEDDLAELERFLTGARL 362 Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414 D +G F YS GT ++D AER+ + + E + +G + Sbjct: 363 DAVGV-----FGYSDEDGTEAETFDGKLDPAEVAERVARISALVEELTAQRAEDRIGTFV 417 Query: 415 EVLIEKHGKEKGKLVGR----SPWL--QSVVL---NSKNHNIGDIIKVRITD 457 +VL+E G + VGR +P + + V+L N+K +G+I++ + D Sbjct: 418 DVLVEHDGADGDDAVGRAAHQAPEVDGECVILEDENTKPLAVGEIVRCEVVD 469 >gi|312879348|ref|ZP_07739148.1| SSU ribosomal protein S12P methylthiotransferase [Aminomonas paucivorans DSM 12260] gi|310782639|gb|EFQ23037.1| SSU ribosomal protein S12P methylthiotransferase [Aminomonas paucivorans DSM 12260] Length = 432 Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 132/453 (29%), Positives = 205/453 (45%), Gaps = 49/453 (10%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 F S GC N DS R + GY ADL V+NTC + A V L I Sbjct: 5 FTLSLGCSKNRVDSERFLGILHEAGYRGTQDPRGADLCVVNTCGFLQSA---VAENLDAI 61 Query: 88 RNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF- 145 +L+ R+KE G++ + V GC+ E+ P V+++ + + L R Sbjct: 62 LDLE--RMKERGEVGRIAVVGCLVNRYEAELRAELPTVDLLARAEDWEGFRRFLGVPRSS 119 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G R+V D+F R +L + EGCD C++C++P RG S Sbjct: 120 GCRMV---LPGGDRFVR----------------YLKVAEGCDNRCSYCMIPSIRGPLRSL 160 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSL-SEIKGLVRL 263 L +V EA L+ G EI L+ Q++ A+ GLD G + + +DLL +L + G V L Sbjct: 161 PLRDLVREAEALVAEGAREICLVAQDLTAY---GLDRGGRESLTDLLDALEPSLPGDVFL 217 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R HP ++ L++ + YL +PVQ S RIL +M R ++ + R Sbjct: 218 RLLYLHPERITPALLERVAKSPQIHSYLDVPVQHASPRILAAMGRPSDPETLARLFETAR 277 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 S+ PD A+ + +VGFP ET+ D + ++++ + + +F +SP G P + + V Sbjct: 278 SIDPDFALRTTVMVGFPQETEADLSVLLRFLERVRFDRIGAFAFSPEEGAPAATLPHPVR 337 Query: 384 ENVKAERL-----LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS----PW 434 + RL L R Q++ F G+++ VL+E+ E+G L GRS P Sbjct: 338 PSTARRRLERVMDLGASLSFRRQRL-FE----GRLLSVLVER--VEEGVLEGRSFREAPE 390 Query: 435 LQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465 + VV + G I VRI + L G Sbjct: 391 VDGVVEIRGGDALLPGQRISVRILEALEHDLIG 423 >gi|257387570|ref|YP_003177343.1| MiaB-like tRNA modifying enzyme [Halomicrobium mukohataei DSM 12286] gi|257169877|gb|ACV47636.1| MiaB-like tRNA modifying enzyme [Halomicrobium mukohataei DSM 12286] Length = 420 Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 116/448 (25%), Positives = 208/448 (46%), Gaps = 35/448 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++ +++YGC N ++ +E G+ + ++AD+ +LNTC + EK + Sbjct: 3 QYHIETYGCTSNRGETQEIEQALREGGHYPADGPEEADVAILNTCTVLEKTERNM----- 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +R + + GDL VV GC+A A+GEE R+ V+ V + +P+ + Sbjct: 58 -LRRAEELDAETPGDL--VVTGCMALAQGEEF--RAADVDAEV--LHWDDVPQHVLNGEC 110 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 DT+ +++D GV L I GC C++C+ G S Sbjct: 111 PTVTPDTE----------TVLD-------GVVGILPIARGCMSDCSYCITKQATGRIESP 153 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S+ + V++AR L+ G E+ + GQ+ + GE L +EI G R+R Sbjct: 154 SVEENVEKARALVHAGAKELRVTGQDTGVYGWDTNQGESLLPELLERICTEIDGEFRVRV 213 Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 ++P+ + + L + + D L +LH PVQSGSD +L M R+H EY ++D Sbjct: 214 GMANPKGVHGVREELARVFAEHDELYNFLHAPVQSGSDDVLADMRRQHAVGEYVAVVDTF 273 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 +S+DFIVGFP ET+ DF+ +M L+ + + ++S R GT ++M + + Sbjct: 274 DEYLDYWTLSTDFIVGFPSETESDFQQSMALLRETRPEKINVTRFSKRPGTDAADM-KGL 332 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 +K +R + + + +A +G+ VL+ + G + + + Q VV+++ Sbjct: 333 GGQIKKDRSKAMSELKMDVTGDAYEAMLGEQKRVLLTEDGTDDSLVGYDEAYRQVVVVDA 392 Query: 443 KNH--NIGDIIKVRITDVKISTLYGELV 468 + +GD + IT +GE + Sbjct: 393 QQRGLEVGDFVDCEITSHNTVYAFGEPI 420 >gi|301163425|emb|CBW22976.1| putative oxidoreductase [Bacteroides fragilis 638R] Length = 432 Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 119/448 (26%), Positives = 214/448 (47%), Gaps = 35/448 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ GY+ + + ++ V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEQLMRQLEEAGYDVTHDSEKPTGEIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE G+L + V GC+++ +E+ P V+ G + L + L +A Sbjct: 66 -LEFAQEKEEGNLEKLFVMGCLSERYLKELAIEIPQVDKFYGKFNWKGLLQDLGKA---- 120 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER Y A+L I EGCD+ C++C +P G +SR + Sbjct: 121 ------YHEELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPI 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE R L+ NGV E ++ Q + + G+D +K +L+ +SEI G+ +R Sbjct: 168 EEILDEVRYLVSNGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISEIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + D + Y+ + +Q SD +L+ M R T E ++I++ R Sbjct: 225 YAYPAHFPKELFRVMRERDNVCKYMDIALQHISDNMLQRMRRHVTKKETYRLIEQFRKEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385 P I + + +VG PGET++DF + V K+ + + +F YS GT +N + + + Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFTYSEEEGTYAAANYEDSIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL--- 440 +K RL L + + + VGQ ++V+I++ E G+ SP + VL Sbjct: 345 LKQARLDELMAIQQGISTELSASKVGQKMKVIIDRIEGEYYIGRTEFDSPEVDPEVLIRC 404 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 N IG+ +V++ D L+GE++ Sbjct: 405 EGDNLMIGNFYQVQVIDSDEFDLFGEII 432 >gi|225012682|ref|ZP_03703117.1| MiaB-like tRNA modifying enzyme YliG [Flavobacteria bacterium MS024-2A] gi|225003215|gb|EEG41190.1| MiaB-like tRNA modifying enzyme YliG [Flavobacteria bacterium MS024-2A] Length = 433 Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 128/449 (28%), Positives = 213/449 (47%), Gaps = 43/449 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-VYSFLGRI 87 V + GC NVYDS + + E V+ ++ +++V+NTC + A E+ V + L +I Sbjct: 13 VITLGCSKNVYDSEVLMGQLRANDQEVVHQ-EEGNIVVINTCGFIDNAKEESVNTILEQI 71 Query: 88 RNLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 N KE G + V V GC+++ ++ + P V+ G LP+LL Sbjct: 72 EN------KEAGKVDKVYVTGCLSERYKPDLQKEIPQVDEYFGTTD---LPQLL------ 116 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +V+ DY E ER+ + A+L + EGCD+ C+FC +P RG S Sbjct: 117 -KVLGADYKHELVGERILTTPKHF-------AYLKVSEGCDRPCSFCAIPIMRGKHRSTP 168 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---GEKCTFSDLLYSLSEIKGLVRL 263 + +VV +A+ L +GV E+ L+ Q++ + GLD K L E +RL Sbjct: 169 IEEVVIQAQNLARDGVKELMLIAQDLTYY---GLDLYKERKLADLLLALVAVEGIEWIRL 225 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y + P + ++K + + YL +P+Q +D ILKSM R T + ++ + R Sbjct: 226 HY--AFPTGFPEDVLKVMREQPKVCNYLDIPLQHIADPILKSMRRGTTKEKTTILLKKFR 283 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P I + + IVG+PGET++DF + V ++ + + F YS T + + V Sbjct: 284 KEVPGIILRTSLIVGYPGETEEDFETLKEWVKEMRFERLGCFTYSHEENTHAHQLEDNVP 343 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439 E +K ER + + + N +CVG+ LI++ KE VGR SP + + V Sbjct: 344 EEIKQERSNAIMEIQSQISWEHNQSCVGKTYRCLIDR--KEGVHYVGRTFMDSPDVDNEV 401 Query: 440 L-NSKNHNI--GDIIKVRITDVKISTLYG 465 L ++ H + G+ + + IT+ L G Sbjct: 402 LVDATAHYVKQGEFVNLLITEATDYDLVG 430 >gi|71282254|ref|YP_268518.1| putative tRNA modifying protein [Colwellia psychrerythraea 34H] gi|123774927|sp|Q484J7|RIMO_COLP3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|71147994|gb|AAZ28467.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Colwellia psychrerythraea 34H] Length = 454 Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 129/455 (28%), Positives = 218/455 (47%), Gaps = 50/455 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS R+ ++GY+ NS DDA+L+++NTC + A ++ +G Sbjct: 25 SLGCPKNLVDSERILTQLRTEGYDVTNSYDDAELVIVNTCGFIDSAVQESLDTIGEALAA 84 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 V+V GC+ + +EI+ P V V GP Y E+L A+ + V Sbjct: 85 NGK---------VLVTGCLG-VKKDEIIELHPNVLGVTGPHAY---DEVL--AQVHEHVA 129 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 ++ + F L + G A+L I EGC+ CTFC++P RG SR + V Sbjct: 130 KPEH---NPFIDL-VPPQGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLDSRPVGDV 185 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA++L+D+GV E+ ++ Q+ +A W G + K L L++ Sbjct: 186 LGEAKRLVDSGVKELLVISQDTSAYGVDVKHKTDFWDGMPV---KTHMQQLCEELAKQGV 242 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +RL Y +P + A G + +PYL +P Q + RILK M R ++ + I Sbjct: 243 WIRLHYVYPYPHVDKIIPLMAEGKI---LPYLDIPFQHANKRILKLMKRPGSSDRVLERI 299 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R + P++ I S FIVGFPGET+++F ++ +++ + FKYSP G + + Sbjct: 300 AKWREICPELVIRSTFIVGFPGETEEEFEELLNFLEEAQLDRVGCFKYSPVEGATANALP 359 Query: 380 EQVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS---- 432 + V + V +RL + +Q K+ ++ +GQ +L+++ +VGRS Sbjct: 360 DHVSDEVMEDRLQRFMAVQAKISSDKLQVR---IGQEYLILVDE--VNGLGIVGRSYMDA 414 Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465 P + V S +++ GD I V+I ++G Sbjct: 415 PEVDGKVYLSDDYDAKPGDQIWVQIIHADEHDVWG 449 >gi|53713716|ref|YP_099708.1| putative Fe-S oxidoreductase [Bacteroides fragilis YCH46] gi|60681987|ref|YP_212131.1| putative oxidoreductase [Bacteroides fragilis NCTC 9343] gi|81314949|sp|Q5LCF8|RIMO_BACFN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|81382384|sp|Q64TK5|RIMO_BACFR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|52216581|dbj|BAD49174.1| putative Fe-S oxidoreductase [Bacteroides fragilis YCH46] gi|60493421|emb|CAH08207.1| putative oxidoreductase [Bacteroides fragilis NCTC 9343] Length = 432 Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 119/448 (26%), Positives = 214/448 (47%), Gaps = 35/448 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ GY+ + + ++ V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEQLMRQLEEAGYDVTHDSEKPTGEIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE G+L + V GC+++ +E+ P V+ G + L + L +A Sbjct: 66 -LEFAQEKEEGNLEKLFVMGCLSERYLKELAIEIPQVDKFYGKFNWKGLLQDLGKA---- 120 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER Y A+L I EGCD+ C++C +P G +SR + Sbjct: 121 ------YHEELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPI 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE R L+ NGV E ++ Q + + G+D +K +L+ +SEI G+ +R Sbjct: 168 EEILDEVRYLVSNGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISEIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P + L + + D + Y+ + +Q SD +L+ M R T E ++I++ R Sbjct: 225 YAYPAHFPEELFRVMRERDNVCKYMDIALQHISDNMLQRMRRHVTKKETYRLIEQFRKEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385 P I + + +VG PGET+ DF + V K+ + + +F YS GT +N + + + Sbjct: 285 PGIHLRTTLMVGHPGETEGDFEELKEFVRKVRFDRMGAFTYSEEEGTYAAANYEDSIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL--- 440 +K RL L + + + VGQ ++V+I++ E G+ SP + VL Sbjct: 345 LKQARLDELMAIQQGISTELSASKVGQKMKVIIDRIEGEYYIGRTEFDSPEVDPEVLIRC 404 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 N IG+ +V++ D L+GE++ Sbjct: 405 EGDNLMIGNFYQVQVIDSDEFDLFGEII 432 >gi|305663521|ref|YP_003859809.1| RNA modification enzyme, MiaB family [Ignisphaera aggregans DSM 17230] gi|304378090|gb|ADM27929.1| RNA modification enzyme, MiaB family [Ignisphaera aggregans DSM 17230] Length = 426 Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 119/443 (26%), Positives = 218/443 (49%), Gaps = 27/443 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGC +N D+ ++ + + E V+S +AD+I+LNTC +R + L Sbjct: 2 KIYIETYGCALNRADTNIIKTLLIEKKIEIVDSPREADVIILNTCVVRYDTEVR---MLK 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R+ L + K ++V+GC+A+A +I +P V++ PQ+ +R+ E + Sbjct: 59 RLEELSKTGKK------IIVSGCMARALPIKIRSVNPKA-VLLPPQSIHRIYEAIN---- 107 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 D Y D+ + +++ + GV A + + EGC C+FC+V R S Sbjct: 108 ----ADDGYIFFDEIKTFTVMPKIID---GVKATIPVAEGCLDECSFCIVKIARPHLKSI 160 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLVRLR 264 + +V+ +++I G EI + Q+++ + G + GE LL S+ EI + +R Sbjct: 161 PIENIVNAVKEVISMGAIEIEITAQDLSVY-GYDIYGEYA-LPKLLESILEIEREDFVIR 218 Query: 265 YTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +PR + + L + L + ++H+PVQSG++R+L++MNR+H + II + Sbjct: 219 IGQLNPRHLVNYLDRFIAILRDPRVYKHVHIPVQSGNNRVLEAMNRKHGVELFLDIISEL 278 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R I I++D IVG PGE ++ F ++ L+ + + +YSPR T S++++Q+ Sbjct: 279 RKKIEGIQIATDIIVGHPGEDEEAFMDSVKLITENYIDRVHIARYSPRPLT-RSSLMKQI 337 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 + +K R ++K N +G I EV I + + +GR + VVL+ Sbjct: 338 PDPIKKSRSSYIEKIYEVVAYEVNREYIGSIAEVWITEIDSRRNIAIGRLFNYRPVVLDR 397 Query: 443 KNHNIGDIIKVRITDVKISTLYG 465 +G V I D L G Sbjct: 398 GPEALGRKAFVEIRDATFYDLRG 420 >gi|313125740|ref|YP_004036010.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM 11551] gi|312292105|gb|ADQ66565.1| MiaB-like tRNA modifying enzyme [Halogeometricum borinquense DSM 11551] Length = 417 Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 116/449 (25%), Positives = 209/449 (46%), Gaps = 40/449 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ +++YGC N +S +E G+ RV ++AD+ ++NTC + EK + L Sbjct: 3 RYHIETYGCTSNRGESRAIESALRDAGHYRVEEPEEADVAIMNTCTVVEKTER---NMLR 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R + L+ +E DL ++ GC+A A+GEE ++ + +P + Sbjct: 60 RAKELE----EETADL--IITGCMALAQGEEFHEEDVDAQIL----HWDDVPSAVTNGEC 109 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 T+ ++DG V L I GC C++C+ + G S Sbjct: 110 PTPGPGTE----------PVLDG-------VVGILPIARGCMSNCSYCITKFATGRVDSP 152 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIKGLVRLR 264 + + V++AR L+ G EI + GQ+ + G D +LL + SEI+G R+R Sbjct: 153 PVEENVEKARALVHAGAKEIRITGQDTGVY---GWDKGDRKLPELLDRICSEIEGDFRVR 209 Query: 265 YTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 ++P + + L++ D L ++HLPVQSGSD +L++M R+H ++ +I++ Sbjct: 210 LGMANPGGIHGIHEELVEVFDRHDKLYNFIHLPVQSGSDTVLEAMRRQHRVDKFVEIVET 269 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +S+DFIVGFP ET+ D +M L ++ + ++S R GT ++M + Sbjct: 270 FDETLDYWTLSTDFIVGFPTETEADHEQSMALFREVRPEKVNVTRFSKRPGTDAADM-KG 328 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 + VK ER + + + ++ +G+ V++ + G + Q +V N Sbjct: 329 LGGTVKKERSKEMSELKMDIVAEAYESMIGETHRVMVVREGTGDSVKCRDEAYRQIIVQN 388 Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468 + H I GD + V +T + +G+ V Sbjct: 389 ASEHGIEPGDFLDVEVTSHQTVYAFGKPV 417 >gi|302344678|ref|YP_003809207.1| MiaB-like tRNA modifying enzyme YliG [Desulfarculus baarsii DSM 2075] gi|301641291|gb|ADK86613.1| MiaB-like tRNA modifying enzyme YliG [Desulfarculus baarsii DSM 2075] Length = 437 Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 117/440 (26%), Positives = 202/440 (45%), Gaps = 22/440 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLG 85 F++ + GC N+ + + M ++G+ + AD +++NTC IR E + + L Sbjct: 4 FYLLNLGCAKNLVEGEHLAGMLLAEGWLASERPEAADWLIVNTCGFIRPAVDEAIDNIL- 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 L + R + G L VV GC+ G ++ R P +++V P LP LL Sbjct: 63 ---ELHDER-RPGQRLAVV--GCLVGRYGRKLARSLPEADLLVAPGRLGDLPALLAAPPA 116 Query: 146 GKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + ++ D ++ G G+ A+L + +GC C FC +P RG S Sbjct: 117 QRLAIAPPRAIFDAATPRALSTGPGW-------AYLRLSDGCRHRCHFCTIPAIRGPLRS 169 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + ++ EA + +GV E+ L+ Q+++++ DG + LL ++ + G+ +R Sbjct: 170 RPAADILAEAEAVAQSGVVELNLVAQDLSSYGHDRPDGPD--LAALLPQIAAVPGVAWVR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 HP + LI+A ++PY LP+Q +D +L++M RR T + +ID IR+ Sbjct: 228 PLYLHPDVLETRLIRAICQTPGVLPYFDLPLQHLADPVLRAMGRRRTGAQLLALIDEIRA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +RP+ + +VG PGE +F M V++I + +F + P G+ S L Sbjct: 288 MRPEAVLRGTLLVGHPGEGAAEFTRLMRGVEEIAFDHLGAFAFCPEPGS-RSARLPAPSP 346 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSK 443 + ERL L R A VGQ + +L + H GR+ W Q+ ++ + Sbjct: 347 ELAQERLETLMAAQRAISAGKLAAQVGQQLSLLAQGPHPDHPYVRWGRT-WRQAPEVDGQ 405 Query: 444 N-HNIGDIIKVRITDVKIST 462 GD RI +IS Sbjct: 406 TIVTDGDPAPGRIHLCRISA 425 >gi|157164712|ref|YP_001466755.1| hypothetical protein CCC13826_0085 [Campylobacter concisus 13826] gi|157101465|gb|EAT97324.2| conserved hypothetical protein [Campylobacter concisus 13826] Length = 412 Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 110/402 (27%), Positives = 196/402 (48%), Gaps = 37/402 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ F K++GC+ N+YD+ ++ + + YE N + AD++V+N+C + A V Sbjct: 2 QKIFFKTFGCRTNIYDTELLKS--YIKDYEITNDEEVADIVVINSCTVTNSADSGV---- 55 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 RN N + G V++ GC A ++G E+ + + V+G L ELL++ + Sbjct: 56 ---RNYINGVKRRGAK--VILTGCGAVSKGRELF--ASGIYGVLGASKKSDLNELLKQEK 108 Query: 145 FGKRVVDTDYSVEDKFE--RLSIVDGG--YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 FE L+ VD N + AF+ IQEGC+ C++C++P RG Sbjct: 109 -------------PFFELGNLNSVDKNIVTNYENHTKAFIKIQEGCNFNCSYCIIPSVRG 155 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S + ++ EAR L NG E+ L G N+ ++ GK + + LL +L +I G+ Sbjct: 156 KARSMDEAMILKEARILAQNGYNELVLTGTNIGSY-GKDTN---SSLGKLLANLGKISGI 211 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + + + + + L +LH+ +Q S +LK M RR+ A+ ++ + Sbjct: 212 RRIRLGSIEPSQIDESFREILKE-EWLERHLHIALQHTSQAMLKIMRRRNNAFSDLELFN 270 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + S+ A+ +D+IVG PGE+++ + ++ K +F YSPR T + + Sbjct: 271 ELSSL--GFALGTDYIVGHPGESEEIWAEAVENFKKFPITHLHAFVYSPRRDTHSATLKS 328 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 V +V RL LQ + +F G + ++ +K+G Sbjct: 329 DVSGDVAKSRLKILQGIALQNNENFRKKHNGTLKILVEQKNG 370 >gi|110597800|ref|ZP_01386083.1| MiaB-like tRNA modifying enzyme [Chlorobium ferrooxidans DSM 13031] gi|110340525|gb|EAT59008.1| MiaB-like tRNA modifying enzyme [Chlorobium ferrooxidans DSM 13031] Length = 448 Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 114/413 (27%), Positives = 203/413 (49%), Gaps = 33/413 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + GC++N ++ + + SQG+++ + + A+LI+++TC + +A +K + Sbjct: 2 KRVAAVTLGCKLNYAETSSILESLCSQGWKQSSIEEGAELIIIHTCAVTAQAEKKCRQKI 61 Query: 85 -GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP---ELL 140 G IRN +SRI V GC AQ + L ++ ++G + + + +++ Sbjct: 62 RGIIRNNPDSRI--------AVIGCYAQLN-PDALSAIKGIDAILGSKEKFAIKWYDDIM 112 Query: 141 ERARFGKRVVDTDYSVEDK----FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 A V + + ++D + S+ G++R R AFL IQ+GCD C++C +P Sbjct: 113 AGAVSLPLVKVSQHGLKDAVYPGYSSTSV--EGHDRTR---AFLKIQDGCDSGCSYCTIP 167 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 RG S ++V A L +G EI L G N+ + G+ +LL L + Sbjct: 168 LIRGRSRSLPPDEIVARAMILASSGYREIVLTGVNIGDYLENGIG-----LPELLRRLEK 222 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 + + R+R ++ P + I+ + ++P+LH+P+QSGSDRILK+M RR+ YR Sbjct: 223 VP-VSRIRISSIEPDVVDSEFIELVANSKTIVPHLHIPLQSGSDRILKAMRRRYDTALYR 281 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-- 374 + + + + D +I +D +VGFPGE+++DF ++++ A F S R GT Sbjct: 282 ERVSGVAAHISDCSIGADVMVGFPGESEEDFLQICRFIEELPLAYLHVFSCSIRPGTALA 341 Query: 375 ---GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 S L V A R L R ++ +F + +G VL E+ +E Sbjct: 342 RQTASRELIAVAPAEIARRSRVLNDLGRRKEAAFKERYIGTKCMVLFEECRQE 394 >gi|163782285|ref|ZP_02177283.1| hypothetical protein HG1285_05845 [Hydrogenivirga sp. 128-5-R1-1] gi|159882318|gb|EDP75824.1| hypothetical protein HG1285_05845 [Hydrogenivirga sp. 128-5-R1-1] Length = 422 Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 127/448 (28%), Positives = 214/448 (47%), Gaps = 38/448 (8%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRI 87 V S GC N+ DS + S G E + ++ AD IV+NTC E A E + + L I Sbjct: 5 VISLGCSKNLVDSEILLARLKSAGVELTSDIESADCIVVNTCGFIEDAKRESIDTILEAI 64 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 K V+V GC+ + +E+ + V G Q++ E+L+ Sbjct: 65 DTGKK----------VLVMGCLVERYRKELEKELTEVEGFFGTQSW---DEILKHLGLQP 111 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + YS RL Y A++ I EGC++ C+FC +P RG +SR + Sbjct: 112 K-----YSAP---YRLLTTPTSY-------AYVKIAEGCNRLCSFCAIPKIRGRHLSRPV 156 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +V E + L GV EI ++ Q+ + GK L E ++LL L E++G+ +R Sbjct: 157 EDIVSEVKDLASRGVKEIDIVSQDTTYY-GKDLYRE-YRLTELLKELEEVEGIEWIRLLY 214 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P ++SD LI D + ++PY +P+Q S ++LKSM R + R++I++IRS P Sbjct: 215 LYPTEVSDQLISYIRDSEKVLPYFDMPIQHISSKVLKSMRRGYDEGFVRRLIEKIRSEIP 274 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 + + + IVG+P E ++DFR ++ V++ + F YSP T + + + + +K Sbjct: 275 EAVLRTTLIVGYPNEDEEDFRRLLNFVEEGHFHWLGVFTYSPEEDTGAFPLGDPLPQELK 334 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVVL-- 440 ER L + R+ N + VG+ +V+++ E KG+ +P + V Sbjct: 335 EERKETLIEAQRKITARKNASLVGKRFKVIVDGFSSEFSFVPKGRAYLHAPEVDGAVYIE 394 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + +GD ++V IT L G +V Sbjct: 395 SEEPLKVGDRVEVEITQATDYDLGGRVV 422 >gi|257056506|ref|YP_003134338.1| MiaB-like tRNA modifying enzyme YliG [Saccharomonospora viridis DSM 43017] gi|256586378|gb|ACU97511.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Saccharomonospora viridis DSM 43017] Length = 480 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 120/461 (26%), Positives = 206/461 (44%), Gaps = 40/461 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + + GC N DS + + G++ + + +D+IV+NTC E+A + L Sbjct: 10 RRVSLLTLGCARNEVDSEELAGRLAAGGWQLSDDPESSDVIVVNTCGFVEQAKKDSVDTL 69 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + VV GC+A+ G+E+ P + V+G Y L E L Sbjct: 70 LAAADTGAK---------VVAVGCMAERYGKELAENLPEADAVLGFDHYPHLAERLVDIA 120 Query: 145 FGKRVVDTDYSVEDKFERLSIVD---------------GGYN----RKR---GVTAFLTI 182 G+ V ++ D+ L I G+ R R A L I Sbjct: 121 EGRPV--ESHTPTDRRTLLPITPVDRQAATDEVTVPGHAGWGPRVLRSRLDDSPVAPLKI 178 Query: 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD- 241 GCD+ C+FC +P RG +SR ++V EA L GV E+ L+ +N ++ GK LD Sbjct: 179 ASGCDRRCSFCAIPSFRGSFVSRHPDELVAEAEWLATQGVRELFLVSENSTSY-GKDLDR 237 Query: 242 --GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 G LL L+ + G+ R+R + P + L++ + Y L Q S Sbjct: 238 SLGGTRALERLLPRLAAVDGIDRVRVSYLQPAETRPDLVRVIATTPGVADYFDLSFQHAS 297 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 + +L+ M R + + ++I++IRS PD I ++ IVGFPGET++D + + Sbjct: 298 ESVLRRMRRFGSTESFLKLIEQIRSYAPDAGIRTNVIVGFPGETEEDVAELERFLTEARL 357 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 F YS GT ++DE+V ER+ + + E + +G +++VL+E Sbjct: 358 DAVGVFGYSDEDGTEAETFDGKLDEDVITERVGRIAALVEELSAQRAEGRIGSVVDVLVE 417 Query: 420 KHGKE-KGKLVGRSPWL--QSVVLNSKNHNIGDIIKVRITD 457 +E G+ ++P + + VVL + +G++++ + D Sbjct: 418 SVDEEIVGRAAHQAPEVDGECVVLGDLDCKVGELLRCEVVD 458 >gi|254391833|ref|ZP_05007028.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294815471|ref|ZP_06774114.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces clavuligerus ATCC 27064] gi|197705515|gb|EDY51327.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294328070|gb|EFG09713.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces clavuligerus ATCC 27064] Length = 499 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 130/455 (28%), Positives = 198/455 (43%), Gaps = 59/455 (12%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G++ V DAD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLAADGWQLVEDAADADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 L +LK+ G VV GC+A+ G+E+ P + V+G Y + + L Sbjct: 61 VDALLEANDLKD----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRL 116 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----------------------- 177 + G + ++ D+ + L + GV Sbjct: 117 QTILSGG--IHASHTPRDRRKLLPLSPAERQSATGVALPGHGDAAPAPIVDLPEGVAPES 174 Query: 178 ---------------AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222 A + + GCD+ C+FC +P RG ISR S V+ E R L + GV Sbjct: 175 GPRAPLRRRLGSSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGV 234 Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282 E+ L+ +N N GK L G+ LL L+ + G+ R+R + P +M LI Sbjct: 235 KEVMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLIDVLT 292 Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342 + PY L Q + +L+SM R + ++++ IRS P + S+FIVGFPGE Sbjct: 293 STPKIAPYFDLSFQHSAPDVLRSMRRFGDTERFLELLETIRSKAPQAGVRSNFIVGFPGE 352 Query: 343 TDDDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK 397 ++ DF T +D IG F YS GT + ++DE+V AERL L + Sbjct: 353 SEADFAELERFLTHARLDAIGV-----FGYSDEDGTEAAGYGNKLDEDVVAERLAHLSRL 407 Query: 398 LREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 E + VG+ +EVL+E E G VGR+ Sbjct: 408 AEELTAQRAEERVGETLEVLVESVDAEDGA-VGRA 441 >gi|312797208|ref|YP_004030130.1| tRNA 2-methylthioadenosine synthase [Burkholderia rhizoxinica HKI 454] gi|312168983|emb|CBW75986.1| tRNA 2-methylthioadenosine synthase [Burkholderia rhizoxinica HKI 454] Length = 197 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 75/192 (39%), Positives = 114/192 (59%), Gaps = 13/192 (6%) Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 L+ +LHLPVQ GSDRIL +M R +T EY+ I+ R+R++RP +++S+DFIVGFPGETDDD Sbjct: 4 LVSHLHLPVQHGSDRILMAMKRGYTVLEYKSIVRRLRAIRPQLSLSTDFIVGFPGETDDD 63 Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406 TM L+D++ Y +FSF +SPR GTP + + + +VK RL LQ + + Sbjct: 64 HAKTMKLIDEVQYDTSFSFIFSPRPGTPAATLHDDTPRDVKLARLQQLQAAIEAHAAKIS 123 Query: 407 DACVGQIIEVLIEKHG-KEKGKLVGRS--------PWLQSVVLNSKNHNIGDIIKVRITD 457 ++ VG + +L+E+ K+ +L GR+ P Q+ S +G ++ V I Sbjct: 124 ESMVGTVQRILVERSARKDPNELAGRTENNRVVNFPAPQA----SHARLLGQMVDVEIVH 179 Query: 458 VKISTLYGELVV 469 +L GEL + Sbjct: 180 AYPHSLRGELAL 191 >gi|291454518|ref|ZP_06593908.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291357467|gb|EFE84369.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 490 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 128/452 (28%), Positives = 198/452 (43%), Gaps = 54/452 (11%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G++ V + AD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLEADGWQLVEDAEAADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----------- 129 L +LK +G VV GC+A+ G+E+ P + V+G Sbjct: 61 VDALLEANDLK----AQGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRL 116 Query: 130 -------------PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG-------- 168 P+ +L + R V ++ E + DG Sbjct: 117 QTILGGGIHASHTPRDRRKLLPISPAERQDSAVALPGHAQEPAAAPADLPDGLAPASGPR 176 Query: 169 -GYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225 R+ G + A + + GCD+ C+FC +P RG ISR S V+ E R L GV EI Sbjct: 177 APLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLQETRWLAGQGVKEI 236 Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285 L+ +N N GK L G+ LL L+E+ G+ R+R + P +M LI Sbjct: 237 MLVSEN-NTSYGKDL-GDIRLLETLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTP 294 Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345 + PY L Q + +L++M R + ++++IR+ P+ + S+FIVGFPGE++ Sbjct: 295 KVAPYFDLSFQHSAPGVLRAMRRFGDTDRFLGLLEQIRAKAPEAGVRSNFIVGFPGESEA 354 Query: 346 DFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400 D T +D IG F YS GT + ++ E AERL + + E Sbjct: 355 DVAELERFLTGARLDAIGV-----FGYSDEDGTEAAGYEGKLPEEEVAERLARVSRLAEE 409 Query: 401 QQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 D VG+ +EVL+E +E+G VGR+ Sbjct: 410 LVSQRADERVGETVEVLVESVDEEEGA-VGRA 440 >gi|58617513|ref|YP_196712.1| hypothetical protein ERGA_CDS_07860 [Ehrlichia ruminantium str. Gardel] gi|58417125|emb|CAI28238.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] Length = 405 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 101/363 (27%), Positives = 175/363 (48%), Gaps = 39/363 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S +++ + + D+IV++TC + +A +V + +IR Sbjct: 4 VITFGCRLNFYESEVIKN--------NLKKAELDDVIVVHTCAVTSEAERQVKA---KIR 52 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L N+ ++ ++VAGC AQ + P++Y +P +++ + Sbjct: 53 KLYNN----NANVKIIVAGCAAQ----------------LNPESYMSMPGVVKVLGNEDK 92 Query: 149 VVDTDYSVEDKF-------ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + Y DK R I D A + IQ GC+ CTFCV+ RG Sbjct: 93 LKYESYITADKVIVGNIGNSRTVIKDSIKQFPGKSRALIEIQNGCNHECTFCVITKARGN 152 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S + ++ + + ++NG E+ G +++ + G + G++ + L I L Sbjct: 153 NRSLHIEDIITQVKDCVNNGYNEVVFTGVDISDF-GIDIYGQRMLGVMIKRVLGAIPQLR 211 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ ++ D LI G+ MP+LHL +QSG++ ILK M RRH + + +R Sbjct: 212 RLRLSSIDVAEIEDDLIDIIGNEPRFMPHLHLSLQSGNNLILKRMKRRHNREQVVEFCNR 271 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 + +R DI +D IVGFP ET+D F T+ L+++ + F YS R GTP + M + Sbjct: 272 VSGMRKDIVFGADIIVGFPTETEDMFNDTVKLIEEANISYLHIFPYSAREGTPAARMPQV 331 Query: 382 VDE 384 E Sbjct: 332 SPE 334 >gi|330826148|ref|YP_004389451.1| 30S ribosomal protein S12 methylthiotransferase rimO [Alicycliphilus denitrificans K601] gi|329311520|gb|AEB85935.1| Ribosomal protein S12 methylthiotransferase rimO [Alicycliphilus denitrificans K601] Length = 463 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 127/485 (26%), Positives = 212/485 (43%), Gaps = 58/485 (11%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 +S+ + P+ FV S GC N+ DS + ++GYE + ADL+++NTC Sbjct: 1 MSEALSPTKTPKIGFV-SLGCPKNLTDSELILTQLSAEGYETSKTFQGADLVIVNTCGFI 59 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV-AQAE---GEEILRRSPIVNVVVG 129 + A + +G + + G V+V GC+ A+A+ G + P V V G Sbjct: 60 DDAVRESLDTIGEA-------LADNGK--VIVTGCLGARADDGGGNLVKGVHPNVLAVTG 110 Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQ 183 P E++E V D F L +V G + + G+ A+L I Sbjct: 111 PHAAQ---EVMEH------VHQHLPKPHDPF--LDLVPGTFG-EAGIKLTPRHYAYLKIS 158 Query: 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--------- 234 EGC+ CTFC++P RG +SR + V++EAR L + GV E+ ++ Q+ +A Sbjct: 159 EGCNHRCTFCIIPSMRGDLVSRPIGDVLNEARALFEGGVKELLVVSQDTSAYGVDVKYRT 218 Query: 235 --WRGKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 W GK + L +++ G VRL Y +P + G +++PYL Sbjct: 219 GFWDGKPVRTRLLELVQTLGAIARPYGAWVRLHYVYPYPSVDDIIPLMQEG---LVLPYL 275 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 +P Q +LK M R + + + I R R + P++ + S FI GFPGET+++F + Sbjct: 276 DVPFQHSHPDVLKRMKRPASGEKNLERIQRWREMCPELVVRSTFIAGFPGETEEEFEHLL 335 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411 + + +A F YS G +++ + ++ ER E + VG Sbjct: 336 QFLREAQIDRAGCFAYSNVRGAAANDLPGMLPMELREERRARFMAVAEEVSTARLQRRVG 395 Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQSVVLN-----------SKNHNIGDIIKVRITDVKI 460 Q ++VL++K K W + ++ SK + +GD +K RI + Sbjct: 396 QTLQVLVDKAVGLGKKGGVGRSWADAPEIDGLVHLLPPEKISKTYKVGDFVKARIVGTQG 455 Query: 461 STLYG 465 L G Sbjct: 456 HDLVG 460 >gi|188994127|ref|YP_001928379.1| putative Fe-S oxidoreductase [Porphyromonas gingivalis ATCC 33277] gi|238066441|sp|B2RHD7|RIMO_PORG3 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|188593807|dbj|BAG32782.1| putative Fe-S oxidoreductase [Porphyromonas gingivalis ATCC 33277] Length = 434 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 121/420 (28%), Positives = 198/420 (47%), Gaps = 44/420 (10%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA----DLIVLNTC-HIREKAAEKV 80 R V + GC N+ DS + F S GY D A +++V+NTC I + E V Sbjct: 5 RVDVITLGCSKNLVDSEVLMRQFLSNGY--TVHHDPASVCGEIVVVNTCGFIGDAQEESV 62 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 + L + K RI G L V+ GC+++ E++ + P V+ G + +L L Sbjct: 63 NTILEMVEAKKAGRI---GSLYVM--GCLSERFREDLKKEIPEVDAYYGKFDWKQLISHL 117 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVP 196 ++ + + NR++ T A+L I EGCD+ C++C +P Sbjct: 118 GKSYYAE---------------------AENRRKLTTPRHYAYLKISEGCDRSCSYCAIP 156 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLS 255 G SR + +V+E R L+ +G E L+ Q++ + GLD ++L LS Sbjct: 157 IITGRHRSRPMEDLVEEVRMLVKHGTREFQLIAQDLTFY---GLDLYGANRLAELTARLS 213 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 +IKG+ LR ++P L+ + + YL + +Q SD +L+ M RR T E Sbjct: 214 DIKGVEWLRLHYAYPAQFPLDLLPVMRERPNVCKYLDMALQHISDPMLRRMRRRITKAET 273 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP- 374 ++I+RIR+ P I + + + G PGET+ DF + V I + + +F YS GT Sbjct: 274 YELIERIRTEVPGIHLRTTLMTGHPGETERDFEELLQFVRDIRFERLGAFTYSHESGTYC 333 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 N + + E+VK ERL L + N+A +G + V+I++ E G VGR+ + Sbjct: 334 DKNYQDDIPESVKQERLGELMAVQERISAAHNEAKIGSRLRVVIDR--AEDGFYVGRTEY 391 >gi|332528547|ref|ZP_08404535.1| ribosomal protein S12 methylthiotransferase [Hylemonella gracilis ATCC 19624] gi|332042058|gb|EGI78396.1| ribosomal protein S12 methylthiotransferase [Hylemonella gracilis ATCC 19624] Length = 486 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 124/457 (27%), Positives = 203/457 (44%), Gaps = 72/457 (15%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 + V P+ FV S GC + DS + ++GY+ + ADL+++NTC Sbjct: 18 ATPAVASSSAPKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFAGADLVIVNTCGFI 76 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE---------GEEILRR-SPI 123 + A ++ +G + E G V+V GC+ G ++R+ P Sbjct: 77 DDAVKESLDTIGEA-------LAENGK--VIVTGCLGARTVGDGDDGQVGANLVRQMHPS 127 Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDY----SVEDKFERLSIVDGGYNRKRGVT-- 177 V V GP + V+D + D F L +V GG+ + G+ Sbjct: 128 VLAVTGPHAT-------------QEVMDAVHLHLPKPHDPF--LDLVPGGFG-EAGLKLT 171 Query: 178 ----AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233 A+L I EGC+ CTFC++P RG +SR + V+ EA+ L + GV E+ ++ Q+ + Sbjct: 172 PRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGDVLKEAKALFEGGVKELLVVSQDTS 231 Query: 234 A-----------WRGKGLDGEKCTFSDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLI 278 A W GK + K DL+ +L E+ VRL Y +P + Sbjct: 232 AYGVDVKYRTGFWDGKPV---KTRMLDLVQALGELAAEHGAWVRLHYVYPYPHVDDILPL 288 Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338 A G +++PYL +P Q +L+ M R + + + I R R + P++ + S FI G Sbjct: 289 MAQG---LVLPYLDVPFQHSHPEVLRRMKRPASGEKNLERIQRWREICPELVVRSTFIAG 345 Query: 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398 FPGET+++F +D V + +A F YSP G + + + + ++ ER Sbjct: 346 FPGETEEEFAHLLDFVREAQIDRAGCFAYSPVRGAAANELPGALPDALREERRQRFMAVA 405 Query: 399 REQQVSFNDACVGQIIEVLIEKH---GKEKGKLVGRS 432 E + VG ++VL++ GK+ G VGRS Sbjct: 406 EEVSTTRLQRRVGATMQVLVDSAPGLGKKGG--VGRS 440 >gi|182435562|ref|YP_001823281.1| hypothetical protein SGR_1769 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776196|ref|ZP_08235461.1| Ribosomal protein S12 methylthiotransferase rimO [Streptomyces cf. griseus XylebKG-1] gi|238066607|sp|B1VXY2|RIMO_STRGG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|178464078|dbj|BAG18598.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656529|gb|EGE41375.1| Ribosomal protein S12 methylthiotransferase rimO [Streptomyces cf. griseus XylebKG-1] Length = 493 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 128/455 (28%), Positives = 200/455 (43%), Gaps = 56/455 (12%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G++ V DAD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLAADGWDLVEDASDADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 L +LK+ G VV GC+A+ G+++ P + V+G Y + + L Sbjct: 61 VDALLEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116 Query: 141 ER-------------------------------ARFGKRVVDTDYSVEDKFERLSIVDGG 169 + A G + ED E ++ V G Sbjct: 117 QTILNGGIHASHTPRDRRKLLPISPAERQDTAVALPGHAQEAPAPAPEDLPEGVAPVSGP 176 Query: 170 ---YNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCE 224 R+ G + A + + GCD+ C+FC +P RG ISR S V+ E R L + GV E Sbjct: 177 RAPLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLQETRWLAEQGVKE 236 Query: 225 ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284 + L+ +N N GK L G+ LL L+++ G+ R+R + P +M LI Sbjct: 237 VMLVSEN-NTSYGKDL-GDIRLLETLLPELADVDGIERIRVSYLQPAEMRPGLIDVLTST 294 Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344 + PY L Q + +L++M R + +++D IRS P S+FIVGFPGET+ Sbjct: 295 PKVAPYFDLSFQHSAPGVLRAMRRFGDTDRFLELLDTIRSKAPQAGARSNFIVGFPGETE 354 Query: 345 DDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399 D T +D IG F YS GT ++D + AERL + + Sbjct: 355 ADLAELERFLTGARLDAIGV-----FGYSDEEGTEAVGYENKLDADTIAERLAHISQLAE 409 Query: 400 EQQVSFNDACVGQIIEVLIEK-HGKEKGKL-VGRS 432 E + VG+ ++VL+E +E G++ +GR+ Sbjct: 410 ELTSQRAEERVGETLQVLVESVESEEDGEVAIGRA 444 >gi|254382132|ref|ZP_04997494.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194341039|gb|EDX22005.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 495 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 130/439 (29%), Positives = 195/439 (44%), Gaps = 53/439 (12%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G+E V DAD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLAADGWELVEDAADADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----------- 129 L +LK+ G VV GC+A+ G+E+ P + V+G Sbjct: 61 VDALLEANDLKD----HGKTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRL 116 Query: 130 -------------PQTYYRLPELLERARFGKRVVDTDYSVE------DKFERLSIVDGGY 170 P+ +L + AR V ++ E D E L+ G Sbjct: 117 QTILNGGIHASHTPRDRRKLLPISPAARQDAEVALPGHAQEPEAAPADLPEGLAPASGPR 176 Query: 171 N--RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225 R+R A + + GCD+ C+FC +P RG ISR S V+ E R L + GV EI Sbjct: 177 APLRRRLDKSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEI 236 Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285 L+ +N N GK L G+ LL L+E+ G+ R+R + P +M LI Sbjct: 237 MLVSEN-NTSYGKDL-GDIRLLETLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTP 294 Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345 ++PY L Q + +L++M R + +++D IR P + S+FIVGFPGE + Sbjct: 295 KVVPYFDLSFQHSAPNVLRAMRRFGDTDRFLELLDTIRGKAPQAGVRSNFIVGFPGEKES 354 Query: 346 DFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400 DF+ T +D IG F YS GT ++DE+ AERL +Q+ E Sbjct: 355 DFKELERFLTHARLDAIGV-----FGYSDEDGTEAVTYEGKLDEDTIAERLAHMQRLAEE 409 Query: 401 QQVSFNDACVGQIIEVLIE 419 + +G+ +EVL+E Sbjct: 410 LTSQRAEERIGETLEVLVE 428 >gi|41614804|ref|NP_963302.1| hypothetical protein NEQ008 [Nanoarchaeum equitans Kin4-M] gi|40068528|gb|AAR38863.1| NEQ008 [Nanoarchaeum equitans Kin4-M] Length = 413 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 121/438 (27%), Positives = 209/438 (47%), Gaps = 36/438 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + + +SYGC +N D+L M+ +Q N++++AD++V+N+C +++ K+ L Sbjct: 2 KVYFESYGCTLNKRDTLYMQ----AQIENTTNNLEEADVVVINSCIVKQPTETKI---LY 54 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLERAR 144 RI LK K +V+ GC+ E L+ + ++ +V R+ E +ER Sbjct: 55 RINQLKKMGKK------IVLTGCMV---SEPYLKYKELQDISLVNIYNQDRIKEAIERTY 105 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+RV+ E+ I A + IQEGC CT+C R + S Sbjct: 106 KGERVLF--------LEKKKIYKEFARPLSKARAIIQIQEGCLWRCTYCGTKLARSMFYS 157 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 + E + + G+ L G + + GK ++ + +DLL L EI+G +R Sbjct: 158 YPPKLIKREIEEKLKQGIKIFYLTGPDTATY-GKDIN---YSLADLLKDLIEIEGDFYIR 213 Query: 265 YTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 ++P + D LI + + + HLPVQSGS+++LK MNR +T EY+++I + Sbjct: 214 VGMANPTFFLEQIDELIDVFKS-NKIFKFFHLPVQSGSNKVLKDMNRPYTIEEYKELIYK 272 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R P +D IVG+P ET++DF T++LV +I + ++ R GT N L+Q Sbjct: 273 LRKHFPLATYVTDIIVGYPTETEEDFEQTLELVREIKFDGINISRFWRRPGTIAWN-LKQ 331 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLN 441 +D + R+ L++ + N + E +IE+ GK + + Q +V Sbjct: 332 LDPEIVTNRVKRLKEVFLQGAYERNKLWLNWEGEAIIEEKGKNNTWIAKNEMYKQIIV-- 389 Query: 442 SKNHNIGDIIKVRITDVK 459 N+ G IKV+I + Sbjct: 390 KGNYEEGQKIKVKIKKAR 407 >gi|313159539|gb|EFR58902.1| ribosomal protein S12 methylthiotransferase RimO [Alistipes sp. HGB5] Length = 432 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 129/454 (28%), Positives = 209/454 (46%), Gaps = 41/454 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82 ++ V + GC N DS + + GYE + D DA ++V+NTC A ++ Sbjct: 2 KKINVITLGCSKNTVDSEHLMARLAAAGYEVLFDSDRTDAKVVVINTCGFIGDAKQESID 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + R KN+ G + V GC+++ +E+ P V+ G +T+ + L Sbjct: 62 MILRAAAAKNA----GKIERLFVVGCLSERYADELRAELPEVDEFFGARTWDGIVRALGA 117 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A D ++E ER Y A+L I EGC+ C +C +P RG Sbjct: 118 AE--------DPALET--ERHLTTPKHY-------AYLKISEGCNWKCGYCAIPLIRGGH 160 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +S + ++ +EARKL GV E+ ++ Q+ + G L G + ++LL L I G+ Sbjct: 161 VSVPMERLEEEARKLAAGGVKELIVIAQDTTYY-GLDLYGRR-MLAELLRRLCRIGGIEW 218 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R ++P D +I+ + YL +P Q SD L +M RRHT + +I R+ Sbjct: 219 IRLHYAYPTAFPDEVIEVMASEPKICKYLDIPFQHISDAQLSAMQRRHTKADAYALIGRL 278 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 R PD+A+ + +VG+PGET DF + V + + + F YS GT + L+ Sbjct: 279 REAIPDLALRTTLLVGYPGETQADFAELEEFVRDVRFERLGVFAYSEEEGTYSAQKLQDN 338 Query: 382 VDENVK---AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434 V E VK ER++ LQ ++ + N VG+ VLI+ ++ VGR SP Sbjct: 339 VPEEVKQQRVERIMALQNEI---SLENNLRRVGRTERVLID--SRQGDYYVGRTQYDSPE 393 Query: 435 L-QSVVLNSKNHNI--GDIIKVRITDVKISTLYG 465 + Q +++ + + G VRI LYG Sbjct: 394 VDQEILIPASEKRLLRGRFYDVRIDSAADYDLYG 427 >gi|241763703|ref|ZP_04761752.1| MiaB-like tRNA modifying enzyme YliG [Acidovorax delafieldii 2AN] gi|241367092|gb|EER61466.1| MiaB-like tRNA modifying enzyme YliG [Acidovorax delafieldii 2AN] Length = 463 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 133/488 (27%), Positives = 213/488 (43%), Gaps = 76/488 (15%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 +S+ + P+ FV S GC + DS + ++GYE + + ADL+++NTC Sbjct: 1 MSEALAPTKTPKVGFV-SLGCPKALTDSELILTQLSAEGYETSKTFEGADLVIVNTCGFI 59 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVG 129 + A ++ +G + E G V+V GC+ GE + P V V G Sbjct: 60 DDAVKESLDTIGEA-------LAENGK--VIVTGCLGARAGEGGGNMVREMHPSVLAVTG 110 Query: 130 PQTYYRLPELLERARFGKRVVDTDY----SVEDKFERLSIVDGGYNRKRGVT------AF 179 P + V+D + D F L +V G + G+ A+ Sbjct: 111 PHAT-------------QEVMDAVHLNLPKPHDPF--LDLVPGSFGVA-GIKLTPKHYAY 154 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA----- 234 L I EGC+ CTFC++P RG +SR + V+ EA+ L + GV E+ ++ Q+ +A Sbjct: 155 LKISEGCNHRCTFCIIPSMRGDLVSRPVGDVLSEAKALFEGGVKELLVISQDTSAYGVDV 214 Query: 235 ------WRGKGLDGEKCTFSDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDL 284 W GK + K +L+ +L EI VRL Y +P + A G Sbjct: 215 KYRTGFWDGKPV---KTRTLELVQTLGEIAAPYGAWVRLHYVYPYPSVDEIIPLMAQG-- 269 Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344 +++PYL +P Q +LK M R + + + I R R P+I I S FI GFPGET+ Sbjct: 270 -LVLPYLDVPFQHSHPDVLKRMKRPASGEKNLERIQRWREACPEIVIRSTFIAGFPGETE 328 Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404 +F+ +D + + +A F YS G + + + V+ ER E ++ Sbjct: 329 AEFQHLLDFLREAQIDRAGCFAYSDVSGAVANELPGMLPLEVREERRARFMAVAEEVSIA 388 Query: 405 FNDACVGQIIEVLIEKH---GKEKGKLVGRS----PWLQSVVL------NSKNHNIGDII 451 VG ++VL++ G++ G VGR+ P + V SK +G+ Sbjct: 389 KLQRRVGATMQVLVDSAPGLGRKGG--VGRTYADAPEIDGTVQLLPPEKISKTMKVGEFT 446 Query: 452 KVRITDVK 459 K RI V+ Sbjct: 447 KARIVAVQ 454 >gi|159045158|ref|YP_001533952.1| ribosomal protein S12 methylthiotransferase [Dinoroseobacter shibae DFL 12] gi|238065338|sp|A8LI17|RIMO_DINSH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|157912918|gb|ABV94351.1| UPF0004 protein yliG [Dinoroseobacter shibae DFL 12] Length = 456 Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 113/401 (28%), Positives = 181/401 (45%), Gaps = 41/401 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY A+ +++NTC + A + +G + Sbjct: 33 SLGCPKALVDSERILTRLRAEGYAISPDYAGAEAVIVNTCGFLDSAKAESLEAIGEALS- 91 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ AE E I P V V GP Y ++V+ Sbjct: 92 ENGR--------VIVTGCLG-AEPEYITGHHPSVLAVTGPHQY-------------EQVL 129 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D ++ D F L G R + +L I EGC+ C FC++P RG SR Sbjct: 130 DAVHAAVPPSPDPFVDLLPASGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGRLASRP 188 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKG 259 VV EA KL++ GV E+ ++ Q+ +A+ G+D G + +DL L + Sbjct: 189 AHAVVREAEKLVEAGVRELLVISQDTSAY---GVDIRHAEDRGHRAHITDLARDLGGLGA 245 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G +++PYL +P Q L+ M R A + I Sbjct: 246 WVRLHYVYPYPHVRDLIPLMAEG---LVLPYLDIPFQHAHPDTLRRMARPAAAEKTLDRI 302 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R++ P+I + S FIVG+PGET+ +F+ +D +D+ + F+Y G + + Sbjct: 303 AEWRAICPEITLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGCFQYENVAGARSNALP 362 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + V VK +R K + + A VG IEV++++ Sbjct: 363 DHVAPEVKQDRWERFMAKAQAISAAKLAAKVGSRIEVIVDE 403 >gi|261328871|emb|CBH11849.1| tRNA modification enzyme, putative [Trypanosoma brucei gambiense DAL972] Length = 535 Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 124/456 (27%), Positives = 212/456 (46%), Gaps = 39/456 (8%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FV ++GC NV D M GY + AD +LN+C ++ + E S + R Sbjct: 53 IFVHTFGCGHNVSDGEYMAGQLVESGYNVTDEFGQADAYLLNSCTVKNPSEEHFVSMMNR 112 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R+ ++VAGCV QA+ ++ V+VV G ++ R+ +++ A G Sbjct: 113 VRDTGKP---------LIVAGCVPQADPTN--KQWGDVSVV-GVRSIDRVSYVVQEALQG 160 Query: 147 KRV----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 V D + L +D R+ + I GC CT+C RG Sbjct: 161 NCVRLLGETEDQRQSNDSNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGDL 220 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS----EIK 258 S + +VD R+++ +GV EI L ++ A+ G+D +D++Y L E++ Sbjct: 221 RSYPVEVIVDRVREVVRDGVKEIRLTSEDSGAY---GID----IGTDVVYLLQAVAVELE 273 Query: 259 GL-VRLRYTTSHPRDMSDCLIKAHGDLDVL-----MPYLHLPVQSGSDRILKSMNRRHTA 312 G V LR S+P + L G VL ++H+PVQSGSD IL++M R +T Sbjct: 274 GTDVMLRVGMSNPPYL---LRHVDGFATVLKHPNVYEFVHIPVQSGSDSILQTMLREYTV 330 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 E+ ID IR+ P +++D I FPGE + +++ TM+L + + ++ PR Sbjct: 331 EEFFMCIDSIRAAVPKATVATDIICAFPGEGESEWQETMELCKRAKFEVINITRFYPRRN 390 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 TP + M +Q+ +V R L + +F D+ VG++ V + + +K LVG + Sbjct: 391 TPAAAM-KQIPTDVAKHRTTELTNFFNSYR-TF-DSMVGEVHNVTLLETAHDKHHLVGHT 447 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V+++ +G+ + V IT ++ G ++ Sbjct: 448 KNYVQVLVDPAQARMGESVVVVITSATKYSVMGRVL 483 >gi|266623032|ref|ZP_06115967.1| tRNA-I(6)A37 modification enzyme MiaB [Clostridium hathewayi DSM 13479] gi|288865210|gb|EFC97508.1| tRNA-I(6)A37 modification enzyme MiaB [Clostridium hathewayi DSM 13479] Length = 286 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 141/244 (57%), Gaps = 15/244 (6%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F ++++GCQMN DS ++ + + G+ ++ ++AD ++ NTC +R+ A ++VY LG Sbjct: 47 FHIETFGCQMNARDSEKLTGILEASGFTETDT-EEADFVLYNTCTVRDNANQRVYGRLGY 105 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELL-ERA 143 + +K ++ +++ + GC+ Q E E+I + V+++ G ++L EL+ ER Sbjct: 106 LNRIK----QKNPAMMIALCGCMMQEETVVEKIKKSYRFVDIIFGTHNIFKLAELISERM 161 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K VVD + E L D Y K GV I GC+ FC++C+VPY RG E Sbjct: 162 DEKKMVVDIWKETDRIVEELP-TDRKYPFKSGVN----IMFGCNNFCSYCIVPYVRGRER 216 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR+ +V E R+L+ +GV E+ LLGQNVN++ GK L+ E TF+ LL + I GL R+ Sbjct: 217 SRNPQDIVGEIRRLVADGVVEVMLLGQNVNSY-GKNLE-EPMTFAKLLQEVEAIDGLRRI 274 Query: 264 RYTT 267 R+ T Sbjct: 275 RFMT 278 >gi|193212430|ref|YP_001998383.1| MiaB-like tRNA modifying enzyme YliG [Chlorobaculum parvum NCIB 8327] gi|238065322|sp|B3QMN0|RIMO_CHLP8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|193085907|gb|ACF11183.1| MiaB-like tRNA modifying enzyme YliG [Chlorobaculum parvum NCIB 8327] Length = 437 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 120/423 (28%), Positives = 199/423 (47%), Gaps = 28/423 (6%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGR 86 F+ S GC N DS R+ + G + +D+A +I++NTC E A E + L Sbjct: 12 FLLSLGCSKNTVDSERLTAQAVASGLTFTDDVDEASIILINTCGFIEDAKKESIDEMLAA 71 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 I + ++E V V GC+ + +E+ P V+ G + +LP++L A G Sbjct: 72 IGKKEEGIVRE-----VYVMGCLVELYRKELSEEMPEVDGWFGTR---QLPDVL--AAIG 121 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + E+ ++R ++ + AFL I EGC++ C+FC +P RG +S+ Sbjct: 122 A------HYCEELYDRRELLTPPH------YAFLKISEGCNRRCSFCSIPKIRGPYVSQP 169 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + Q++ EA L + GV E+ L+ Q+++ + G L G K +DL LS++ G +R Sbjct: 170 IEQLLREAALLQEQGVRELNLIAQDISVY-GYDLYG-KPALNDLTLRLSDM-GFDWIRLL 226 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P + +I + YL +P+Q +DRILKSM R ++ID IR Sbjct: 227 YAYPLNFPLEVIDTMRQRRNVCNYLDMPLQHINDRILKSMQRGIGRKGTEELIDAIRQKN 286 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDI + + I G+P ET ++F +D V + + + F Y P + + + + Sbjct: 287 PDIRLRTTMIAGYPSETREEFDELLDFVRQARFDRLGCFPYRHEEHAPAYALEDTISDKE 346 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHN 446 K ER+ L + S N GQ + VLI++ E GR+ + V N Sbjct: 347 KEERVGELMELQESIAASLNRKLEGQTLTVLIDR--IEDNVAYGRTEYDAPEVDNDVIIE 404 Query: 447 IGD 449 IGD Sbjct: 405 IGD 407 >gi|257456035|ref|ZP_05621240.1| radical SAM domain protein [Treponema vincentii ATCC 35580] gi|257446558|gb|EEV21596.1| radical SAM domain protein [Treponema vincentii ATCC 35580] Length = 515 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 132/519 (25%), Positives = 227/519 (43%), Gaps = 99/519 (19%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSF 83 +RFF+ +GC N D + + +G+++ + ADLI++N+C E A E + S Sbjct: 3 KRFFLDQHGCAKNQVDGELLIGILTDRGWQKTPEPEKADLIIVNSCGFIEPAKRESIESV 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + +++I ++AGC+A+ G+ + G +LP L++R Sbjct: 63 ITARAAYPHAKI--------LLAGCLAERYGDVFKTEFEEADAFFGNGDLSQLPVLIDRL 114 Query: 144 RFGKRVVDTDYSV---EDKFERLSIVDGGYNR------KRGV-------------TAFLT 181 + S ++K++ +S G++R ++GV +AF+ Sbjct: 115 FPDASPAEQQSSATLRQEKYQPVSPT--GHSRPFLKPAQKGVCCGQRPELLNFPRSAFIK 172 Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------ 235 I EGC+ C+FC +P RG SR + +V E + + G E L+GQ++ + Sbjct: 173 ITEGCNNCCSFCAIPLIRGSVRSRPAADIVSEIQSFVRQGYKEFNLIGQDLAVYEAAPPA 232 Query: 236 ------------------------RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271 R L G + LL+++S IKG +R HP Sbjct: 233 DAIDRPLPLKTEAEAEANKAETNKRKPKLSG----LAQLLHAISGIKGQFSVRLLYIHPD 288 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-----R 326 ++ +PY +P QSGSD I+++MNR +A Y +I+ IR+ Sbjct: 289 HFPLDILPVMTADTRFLPYFDIPFQSGSDPIIRAMNRCGSAEAYLNLIENIRAAFRSAES 348 Query: 327 P--DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P + I + F+ GFPGET DF T + + + +F YS GT ++M +QV Sbjct: 349 PYGEAVIRTTFLTGFPGETQADFERTAAFLQAVQSLWSGAFAYSQEEGTKAADMKKQVPA 408 Query: 385 NVKAER---LLCLQKKLREQQV-SFNDACVGQIIEVLIEKHGKEKGKL-----VGRSPWL 435 + +R L LQ K+ EQ++ SF +IE +I + + +GR+ W Sbjct: 409 KIAEQRKAALNELQLKITEQKLASFCGLETNVLIEEIIPQDKSSEDSTQGCIALGRA-WF 467 Query: 436 Q------SVVLN-------SKNHNI--GDIIKVRITDVK 459 Q +VV+N S+ I G +++VRIT ++ Sbjct: 468 QAPEVDGAVVVNFSEAQKDSEGQPITAGSLVRVRITALR 506 >gi|284163849|ref|YP_003402128.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511] gi|284013504|gb|ADB59455.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511] Length = 417 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 124/449 (27%), Positives = 204/449 (45%), Gaps = 40/449 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ +++YGC N +S +E G+ RV+ D+AD+ +LNTC + EK + L Sbjct: 3 RYHIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTER---NMLR 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R L +E DL + GC+A A+GEE R + + V+ + +PE + Sbjct: 60 RAEELS----EETADLFIT--GCMALAQGEE-FRAADVDGQVL---HWDEVPEAVTNGEC 109 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 D + I+DG V L I GC C++C+ G S Sbjct: 110 PTTTPDAE----------PILDG-------VVGILPIARGCMSDCSYCITKQATGKIDSP 152 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + + V++AR LI G EI + GQ+ + G D + LL + I+G R+R Sbjct: 153 PIEENVEKARALIHAGAKEIRITGQDTGVY---GWDEGERKLHRLLSEICAIEGDFRVRV 209 Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 ++P+ + + L + + L +LH PVQSGS+ +L M R+H EY ++++ Sbjct: 210 GMANPKGVHGIREELAAVFAENEELYDFLHAPVQSGSNDVLGDMRRQHQVDEYVEVVETF 269 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 +S+DFIVGFP ETD D +M L+ + + ++S R GT + M + + Sbjct: 270 DDALDYWTLSTDFIVGFPTETDRDHAQSMALLRETRPEKINVTRFSKRPGTDAAEM-KGL 328 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIE-VLIEKHGKEKGKLVGRSPWLQSVVLN 441 VK ER + + RE VG++ E L+ + G S + Q +V N Sbjct: 329 GGTVKKERSKEMSEVKREIVREAYADMVGEVREDCLVVEEGTADSVKCRDSAYRQVIVQN 388 Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468 + + I GD + + + + +GE V Sbjct: 389 ASEYGIEPGDFVDLEVAAHETMYAFGEPV 417 >gi|94987120|ref|YP_595053.1| 2-methylthioadenine synthetase [Lawsonia intracellularis PHE/MN1-00] gi|123082153|sp|Q1MQJ5|RIMO_LAWIP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|94731369|emb|CAJ54732.1| 2-methylthioadenine synthetase [Lawsonia intracellularis PHE/MN1-00] Length = 440 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 124/441 (28%), Positives = 207/441 (46%), Gaps = 41/441 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYER--VNSMDDADLIVLNTCH-IREKAAEKVYSFLGRI 87 S GC N D+ E + S G ++ ++AD + +NTC I E V + L + Sbjct: 14 SLGCPKNRVDT---ERLLGSLGIPLTFIDYPNNADFVFINTCSFIHTAVQESVNTILQLV 70 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRLPELLERARFG 146 +++ K ++VAGC GE+IL++ P V++ + + E + A Sbjct: 71 ADVEELSEKP----FIIVAGCFVGRYGEKILKKDIPEVDLWLDNKEIESWNEQILLA--- 123 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + + V D+ I+ G + A+L I +GC C+FC +P RG S S Sbjct: 124 -LNIKSTFLVTDR-----IITTGKSY-----AWLKISDGCQHSCSFCTIPSIRGSLHSYS 172 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + ++V E+R ++D GV E+ L+ Q+V AW G+ L LL L + GL RLR Sbjct: 173 IDELVKESRHILDQGVKELVLVAQDVTAW-GRDLPN-NYGLKTLLDHLLVLDGLKRLRLM 230 Query: 267 TSHPRDMS-DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P ++ D L+ + +PY +P+Q IL M R A R++ID IRSV Sbjct: 231 YLYPTGLTKDFLLYLKSVGEPFVPYFDVPIQHAHPDILSCMGRPF-AKNPRKVIDNIRSV 289 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ + + I GFPGET+ +++I + F Y GTP + M QV E Sbjct: 290 FPEAVLRTSVITGFPGETEGHHVYLSKFIEEIKFQHLGIFSYVAEAGTPAAVMPNQVGEK 349 Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS----- 437 VK +R L+ +Q K+ E+ + VG+ + ++++ E +L W Q+ Sbjct: 350 VKEQRKAELMEIQLKISEKWLK---NFVGKRLSLIVDNVHPEWPELYTGRAWFQAPEVDG 406 Query: 438 -VVLNSKNHNIGDIIKVRITD 457 V ++ N G++I+ I + Sbjct: 407 MVYISGPNIKPGELIEADIME 427 >gi|72161199|ref|YP_288856.1| hypothetical protein Tfu_0795 [Thermobifida fusca YX] gi|123733592|sp|Q47RT4|RIMO_THEFY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|71914931|gb|AAZ54833.1| Conserved hypothetical protein [Thermobifida fusca YX] Length = 483 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 128/468 (27%), Positives = 204/468 (43%), Gaps = 57/468 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N DS + + G+ V++ D AD++++NTC + A E I Sbjct: 11 TLGCARNEVDSEELAGRLAADGWTLVDADDGEKADVVIVNTCGFIQAAKED------SIE 64 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L N+ EGG VV AGC+A+ G E+ P V+ Y + E LE G+ Sbjct: 65 TLLNA--AEGG-ARVVAAGCLAERYGAELAEAMPEAQVISF-DDYAHISERLEDVLAGRP 120 Query: 149 VVDTDYSVEDKFERLSI--VDGGYNRKRGVTAFLT------------------------- 181 + T ++ D+ L I VD K V LT Sbjct: 121 L--TPHTPRDRRTLLPITPVDRSQAAKNHVPGHLTFGEEITPLPDGVAPASGPTIPRLRL 178 Query: 182 ---------IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232 I GCD+ C+FC +P RG +SR V+ EA L GV E+ L+ +N Sbjct: 179 TGGPVANLKIASGCDRRCSFCAIPSFRGAYLSRKPEDVLREAEWLAGQGVRELFLVSENS 238 Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292 ++ GK L G+ LL L+ I G+ R+R + P ++ LI ++PY Sbjct: 239 TSY-GKDL-GDVRALEKLLPRLAAIPGIERVRVSYLQPAEVRPGLIDVLTGTPGVVPYFD 296 Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 L Q S +L+ M R + +++ RIR+ P+ I S+FIVGFPGETD+DF + Sbjct: 297 LSFQHASGPLLRRMRRFGDRERFLELVARIRAKAPEAGIRSNFIVGFPGETDEDFAELVA 356 Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412 +++ F YS GT + ++ E ER+ L + E + +G Sbjct: 357 FLEQARLDAIGIFGYSDEDGTEAAGFDGKLPEETIKERVDQLNQLAEELMAQRAEERIGS 416 Query: 413 IIEVLIE---KHGKEKGKLVGRSPWL--QSVVLNSKNHNIGDIIKVRI 455 I+VL+E G +G+ ++P + +++ ++GDI+ + Sbjct: 417 TIDVLVEDVLDDGAYEGRAAHQAPEVDGSTILYADTALHVGDIVPATV 464 >gi|207109287|ref|ZP_03243449.1| putative ATP-binding protein [Helicobacter pylori HPKX_438_CA4C1] Length = 207 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/190 (40%), Positives = 116/190 (61%), Gaps = 3/190 (1%) Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHP 270 EA KL +NG E+ LLGQNVN + G E K FSDLL LSEI+G+ R+R+T+ HP Sbjct: 2 EAEKLANNGTKELMLLGQNVNNY-GTRFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHP 60 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 M+D ++ + +H+P+QSGS +LK M R ++ + ++R++++ P++ Sbjct: 61 LHMNDAFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVG 120 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 IS+D IVGFP E+D DF TM++++K+ + +SF YSPR T E+V V + R Sbjct: 121 ISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSR 180 Query: 391 LLCLQKKLRE 400 L LQ + +E Sbjct: 181 LERLQNRHKE 190 >gi|326388653|ref|ZP_08210246.1| MiaB-like tRNA modifying enzyme [Novosphingobium nitrogenifigens DSM 19370] gi|326206904|gb|EGD57728.1| MiaB-like tRNA modifying enzyme [Novosphingobium nitrogenifigens DSM 19370] Length = 405 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 120/410 (29%), Positives = 185/410 (45%), Gaps = 46/410 (11%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V + GC++N+ +S + M + ER +V+N+C + +A + + R+R Sbjct: 7 VVTLGCRLNLAESDAIRAML-AAAPERT--------VVVNSCAVTAEAVRQSRRAIRRLR 57 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 D +VV GC A + + + VV P A R Sbjct: 58 RAHP-------DARLVVTGCAATITPDIFSAMAEVDAVVANPDKL---------APASWR 101 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + E RLS R AF+ +Q GCD CTFC++P RG +S ++ Sbjct: 102 TDEHAPVSESPSARLS--------DRHTRAFVPVQTGCDHACTFCIIPLGRGHSVSTPVA 153 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGL----DGEKCTFSDLLYS-LSEIKGLVRL 263 +V+ + GV EI L G +V W G L +G DL+ + L+ L RL Sbjct: 154 RVLRAIEAHLALGVNEIVLTGVDVTGW-GADLAPKPEGGMPRLGDLVGAILAHFPDLPRL 212 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ ++ D L + +MP++HL +QSG D +LK M RRH+ + +I+R+R Sbjct: 213 RLSSLDGVEIDDRLFEILTGEPRVMPHIHLSLQSGDDMVLKRMKRRHSRGQALFLIERLR 272 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 RPDIAI +D I GFP ET+ + L+ G F YSPR GTP + M VD Sbjct: 273 LYRPDIAIGADIIAGFPTETEAMHANNLSLIAAAGIVHGHIFPYSPRPGTPATRM-PAVD 331 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 ER L++ + ++ ++ +G+ EVL E+ G G SP Sbjct: 332 PAQVRERAAQLREAVAAERAAWLHGLIGRPREVLAERDG------TGHSP 375 >gi|301111844|ref|XP_002905001.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora infestans T30-4] gi|262095331|gb|EEY53383.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora infestans T30-4] Length = 624 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 116/364 (31%), Positives = 181/364 (49%), Gaps = 39/364 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE--KAAEKVYS 82 Q ++K+YGC NV DS M+ + S GY D A L +LN+C +++ +AA + Sbjct: 61 QLIWIKTYGCSHNVSDSEYMQGVLASYGYRFTQDPDAAQLWLLNSCTVKDPSQAAFMHLA 120 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG-----EEILRRSPIVNVVVGPQTYYRLP 137 GR +N VVVAGCV QA+ EE+ +VG Q R+ Sbjct: 121 VKGRKQNKA-----------VVVAGCVPQADRHLKGLEEV--------SIVGIQQVDRVV 161 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 E++E G V + RL +D RK + + + GC CT+C + Sbjct: 162 EVVEETLKGHTVRLLAKN------RLPELDLPKIRKNPMVEIIPLSTGCLGACTYCKTRH 215 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG S + +V A+ +I+ GV EI L ++ A+ G+D L+ L E+ Sbjct: 216 ARGKLGSYTPEAIVSRAQTVINEGVTEIWLSSEDTGAY---GIDI-GTDLPTLMRKLLEV 271 Query: 258 -KGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 + LR ++P + D L I + + + +LH+PVQSGSD +L +MNR +TA E Sbjct: 272 VPDGIMLRVGMTNPPYILDHLDAIAEVLNHERVYSFLHVPVQSGSDDVLLAMNREYTAGE 331 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +R++ D + + PD+ +++D I GFP ET++ F TM+LVDK + ++ PR GTP Sbjct: 332 FRRVADELLAKVPDLTLATDIICGFPTETEEHFDETMELVDKYRFHIMNISQFYPRPGTP 391 Query: 375 GSNM 378 + M Sbjct: 392 AAKM 395 >gi|223039951|ref|ZP_03610234.1| conserved hypothetical protein [Campylobacter rectus RM3267] gi|222878819|gb|EEF13917.1| conserved hypothetical protein [Campylobacter rectus RM3267] Length = 431 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 111/416 (26%), Positives = 201/416 (48%), Gaps = 38/416 (9%) Query: 11 AHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70 A++ S + Q ++ F K++GC+ N+YD+ M+ + + Y+ V+ ++AD++V+N+C Sbjct: 3 ANLNSNLTTQEPRREKVFFKTFGCRTNIYDTELMKS--YVKDYDIVSDENEADIVVVNSC 60 Query: 71 HIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGP 130 + A S++ I+ K G V++ GC A ++G+E+ +S + V+ G Sbjct: 61 TVTNSADSGARSYINGIK-------KRGAR--VILTGCGAVSKGKELFSKSAVFGVI-GA 110 Query: 131 QTYYRLPELLERARFGKRVVDTDYSVEDKFE--RLSIVDGG--YNRKRGVTAFLTIQEGC 186 + LL+ S + FE L +D N + AF+ IQEGC Sbjct: 111 SKKEDINALLK-------------SQDPFFELGNLKSIDKNIVTNYENHTKAFIKIQEGC 157 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246 D C++C++P RG S ++ EA+ L NG E+ L G N+ ++ G D + Sbjct: 158 DFACSYCIIPAVRGKARSMDEEAILREAKILAYNGYNELVLTGTNIGSY---GKD-TGSS 213 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 LL L ++ G+ R+R + P + + + + L +LH+ +Q S+ +L+ M Sbjct: 214 LGRLLGRLGKVGGIKRIRLGSIEPSQIDESFREILRE-SWLERHLHIALQHTSEAMLRIM 272 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 RR+ A+ ++ + + A+ +D+IVG PGE+++ + + K F Sbjct: 273 RRRNQAFRDLELFLELSEM--GFALGTDYIVGHPGESEEIWSEALVNFKKFPLTHLHCFA 330 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIEK 420 YSPR GT ++M V +V RL L++ + E F A G + VL+E+ Sbjct: 331 YSPRTGTHSADMKMDVSGDVAKARLKTLKQIVAENNFKFRQEHAKKGGSLNVLVEQ 386 >gi|310814756|ref|YP_003962720.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Ketogulonicigenium vulgare Y25] gi|308753491|gb|ADO41420.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Ketogulonicigenium vulgare Y25] Length = 459 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 122/452 (26%), Positives = 206/452 (45%), Gaps = 42/452 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 36 SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 92 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ AE E I P V V GP Y ++ + + A Sbjct: 93 ----LQENGK--VIVTGCLG-AEPEYITGVHPKVMAVTGPHQYEQVLDAVHVAVPPS--- 142 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L G R + +L I EGC+ C FC++P RG +SR + Sbjct: 143 ------PDPFVDLLPAAGIKLTPRHYS-YLKISEGCNHKCKFCIIPDMRGRLVSRPAFAI 195 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVRL 263 V EA KL+ +GV E+ ++ Q+ +A+ G+D G + +DL L + VR+ Sbjct: 196 VREAEKLVQSGVKELLVISQDTSAY---GVDLKYATERGHRAHITDLARDLGSLGAWVRM 252 Query: 264 RYTTSHP--RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 Y +P RDM + +++PYL +P Q +L+ M R A + I Sbjct: 253 HYVYPYPHVRDMIPLMADG-----LILPYLDIPFQHAHPDVLRRMARPAAAAKTLDEIAA 307 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R + PDI + S FIVG+PGET+ +F+ +D +D+ + F+Y G + + + Sbjct: 308 WRDICPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNLLPDH 367 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVV 439 V + VK +R +K + + A VGQ ++V+I+ + G + +P + + Sbjct: 368 VPDEVKQDRWNRFMEKAQAISAAKLQAKVGQQMDVIIDEIEDGVATCRTKADAPEIDGNL 427 Query: 440 L---NSKNHNIGDIIKVRITDVKISTLYGELV 468 + ++GDI++V + + + L+G V Sbjct: 428 FIDEGVERLSVGDIVRVTVDEAEDYDLWGTPV 459 >gi|224418140|ref|ZP_03656146.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT 98-5491] gi|253827467|ref|ZP_04870352.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT 98-5491] gi|313141675|ref|ZP_07803868.1| tRNA modifying enzyme [Helicobacter canadensis MIT 98-5491] gi|253510873|gb|EES89532.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT 98-5491] gi|313130706|gb|EFR48323.1| tRNA modifying enzyme [Helicobacter canadensis MIT 98-5491] Length = 423 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 117/408 (28%), Positives = 201/408 (49%), Gaps = 49/408 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMF--FSQG-YERVNSMDDADLIVLNTCHIREKAAEKV 80 P+ FF K++GC+ N++D+ M FSQ YE +D+D+IV+N+C + A V Sbjct: 4 PKVFF-KTFGCRTNLFDTQVMIHSLKDFSQTPYE-----EDSDIIVVNSCTVTNGADSGV 57 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 S++ R++N EG + GC + +G+++L++ IV G + E+L Sbjct: 58 RSYINRLQN-------EGKKIFFT--GCGVKTQGQDLLQKGLIVGAF-GHSYKESINEIL 107 Query: 141 ERARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 +R + ++ +E E L +I+ + R AF+ IQEGCD C++C++P Sbjct: 108 KRTQ--------NFYLEGDLESLDRNIISDFIGKSR---AFIKIQEGCDFACSYCIIPSV 156 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG S ++++++ KL NG E L G N+ +W G D + + LL S+ I Sbjct: 157 RGKARSFEKNKIINQITKLTQNGFSEFILTGTNMGSW---GKDSNE-NLTSLLESICAIP 212 Query: 259 GLVRLRYTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 + RLR + P +D D L D + +LH+ +Q S +LK MNR++T + Sbjct: 213 EVKRLRLGSLEPSQITQDFLDFL-----DHPKIERHLHIALQHTSPFMLKLMNRQNTFEK 267 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 ++ + + + A+ SDFIVG P E+ + + SF YSPR GT Sbjct: 268 DLELFNTL--AKKGFALGSDFIVGHPQESQEVWEEAFSNFALFPLTHLHSFIYSPRSGTF 325 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFND--ACVGQIIEVLIEK 420 +++ E+V ++ R ++ K+ E +F + + I VLIE+ Sbjct: 326 SASLKERVSGDISKIRKKQIEAKVTENNFAFRQKLSKANKPISVLIEE 373 >gi|160901669|ref|YP_001567250.1| MiaB-like tRNA modifying enzyme [Petrotoga mobilis SJ95] gi|160359313|gb|ABX30927.1| MiaB-like tRNA modifying enzyme [Petrotoga mobilis SJ95] Length = 434 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 111/400 (27%), Positives = 199/400 (49%), Gaps = 26/400 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 ++GC+MN +S M + S ++ V M +D+ VLNTC + +A KV + R++ Sbjct: 9 TFGCKMNQAESQAMAEKL-SPHFDIVFEEKMGKSDIYVLNTCAVTSEAERKVRQTIRRLK 67 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERARFGK 147 K + ++ GC + ++ EE+ + ++V+G ++ LL E + Sbjct: 68 -------KSNENSKIIATGCYSVSDPEELKKVG--ADLVLGNLEKKQIDRLLCEEGIYSD 118 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRS 206 + + +K++ L + +R R FL I+EGC CTFC + + RG++I S Sbjct: 119 KHF---WFHNEKYDILVPNEPYGDRTR---IFLPIEEGCINSCTFCKIRFLRGLKIVSLP 172 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL--SEIKGLVRLR 264 +V+ K I+ G EI L G N+ + G+D + T +LL + S +R+R Sbjct: 173 TEEVIKSIEKFIEKGYKEIVLTGTNLGYY---GMDNSE-TLEELLNQIGKSFADKEIRIR 228 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 T+ +P ++D L + ++HL +Q SD+IL+SM+R++ I+ +R Sbjct: 229 ITSLYPEIITDNLSTILNSYPIFEKHIHLSIQHFSDKILQSMHRKYNRKMIYTAIENLRK 288 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +I+ D IVGFPGE ++D R D ++++ + SF+YS R GT + M Q+ Sbjct: 289 YDSKFSITCDLIVGFPGEDEEDLRILFDSIEELKVLKVHSFRYSLREGTVAAKMQNQIPG 348 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 N K +RL + K + ++ + +G ++VL E K+ Sbjct: 349 NEKKDRLSQMDKIADLSRKNYLNDMLGSRVKVLTESSSKK 388 >gi|326330088|ref|ZP_08196400.1| 2-methylthioadenine synthetase [Nocardioidaceae bacterium Broad-1] gi|325952098|gb|EGD44126.1| 2-methylthioadenine synthetase [Nocardioidaceae bacterium Broad-1] Length = 493 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 131/476 (27%), Positives = 215/476 (45%), Gaps = 36/476 (7%) Query: 12 HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH 71 Q DQ +V + + GC N DS + + G+ V D+AD +V+NTC Sbjct: 16 QQADQKADQKVV--SVAMVTLGCTRNEVDSEELAGRLTAGGFRLVADPDEADTVVVNTCG 73 Query: 72 IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGP 130 E+A + L L+ + +KE G VVA GC+A+ G+++ P + V+G Sbjct: 74 FVEQAKKDSVDTL-----LEAADLKETGKAQAVVAVGCMAERYGKDLAAELPEADAVLGF 128 Query: 131 QTYYRLPELLERARFG----------KRVVDTDYSVEDKFERLSI--------VDGGYNR 172 Y + L G +R++ VE +S+ V G R Sbjct: 129 DDYPDIAAKLRSILSGETHHPHTPQDRRLLLPISPVERDASAISVPGMAAVDQVPGFAGR 188 Query: 173 KR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229 R A L + GCD+ CTFC +P RG +SR S V+ EA+ L + GV E+ L+ Sbjct: 189 TRLDDAPWAPLKLASGCDRRCTFCAIPQFRGSFVSRRPSDVLHEAQWLAEQGVKELFLVS 248 Query: 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289 +N ++ GK L G+ LL L+ I G+ R+R + P + L+K + P Sbjct: 249 ENSTSY-GKDL-GDIRLLETLLPELAGIDGIERVRVSYLQPAETRPDLLKVIATTPGVTP 306 Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349 Y L Q S+ +L+ M R + ++++IR P+ + S+ IVGFPGET++D Sbjct: 307 YFDLSFQHASNAVLRRMKRFGDPESFLGLLEQIRGYAPEAGVRSNVIVGFPGETEEDLEI 366 Query: 350 TMDLVDKIGYAQAFSFKYSPRLGT--PGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407 D + F YS GT G + ++DE+ R+ + + + E V + Sbjct: 367 LTDFLVAARMDVTGVFGYSDEEGTEAAGFDASLKLDEDEIRARVEHVNELVEELTVQRAE 426 Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463 +G+ + VL+E+ G++ GR+ Q ++ GD+ VR D+ +T+ Sbjct: 427 ERIGEQVVVLVEE--TSDGEIWGRAAH-QGPEVDGMTALEGDVDGVRPGDLVTATV 479 >gi|325971811|ref|YP_004248002.1| MiaB-like tRNA modifying enzyme [Spirochaeta sp. Buddy] gi|324027049|gb|ADY13808.1| MiaB-like tRNA modifying enzyme [Spirochaeta sp. Buddy] Length = 437 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 116/399 (29%), Positives = 183/399 (45%), Gaps = 29/399 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V + GC++N +S + D F +G+ V ADL V+NTC + KA +K + + Sbjct: 5 VYTLGCRLNQCESEAIADSFAKEGFTIVEEQVPADLYVVNTCTVTSKAEQKARRMIRKFA 64 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L + + GC AQ +E+ S NV+V P L Sbjct: 65 ELAPT----------LATGCYAQVNEQELKELSD--NVIVVPLEKKAHLLKLALHLKACL 112 Query: 149 VVDTDYSVEDKFERLSIVDG--------GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 V D K LS DG + A+L IQ+GCD C +C V RG Sbjct: 113 VSGMDL----KGGCLSFSDGKASVFDYDAASFSYHSRAYLKIQDGCDNSCAYCRVHIARG 168 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 +S QV++ A L +G EI L G N+ + + + L L+++ Sbjct: 169 KAVSLQTEQVIERALALEASGFQEIMLTGVNLTMYDHQ----GEGLGGLLEKLLAKLSSS 224 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 VR+R ++ P + D L+ D + P+ H+PVQSGSD ILK ++R +T E I+D Sbjct: 225 VRIRLSSMEPDHIDDRLLDVLTDRR-MQPHFHIPVQSGSDHILKHVDRHYTISELSVILD 283 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+R + D +++D I G PGE ++DF AT V ++ F +SPR T + Sbjct: 284 RLRKAKNDPFLAADIITGLPGEREEDFAATRQFVIDQQFSFLHVFPFSPRPDTVLYKAKD 343 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 +V E+++ ER L L+ + ++ VG+ EV+++ Sbjct: 344 RVTESLRDERALELRTISEQLHDAYRKRQVGKRTEVILQ 382 >gi|300710670|ref|YP_003736484.1| MiaB-like tRNA modifying enzyme [Halalkalicoccus jeotgali B3] gi|299124353|gb|ADJ14692.1| MiaB-like tRNA modifying enzyme [Halalkalicoccus jeotgali B3] Length = 414 Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 118/448 (26%), Positives = 201/448 (44%), Gaps = 41/448 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ +++YGC N +S +E G+ R +AD+ +LNTC + EK + L Sbjct: 3 RYHIETYGCTSNRGESRAIESALRDAGHYRAAGPAEADVAILNTCTVVEKTE---TNMLR 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R + L+ +E DL +V GC+A A+ E +V + +P+ A Sbjct: 60 RAKELE----EETTDL--IVTGCMALAQSE------AFSDVDARVMHWDEVPQ----AAL 103 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 VE E GV L I GC C++C+ + G S Sbjct: 104 NGECPTPGPGVEPVLE-------------GVVGILPIARGCMSNCSYCITKHATGRVDSP 150 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ V++AR L+ G E+ + GQ+ + G D + + +LL + I+G R+R Sbjct: 151 TIEANVEKARALVHAGAKELRITGQDTGVY---GWDDGERSLPELLSRICAIEGEFRVRL 207 Query: 266 TTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 ++P + + L + + + L ++H PVQSGSD +L+ M R+H ++R+I+ Sbjct: 208 GMANPGGIHGIHEELAEVFAENEKLYDFIHAPVQSGSDEVLEEMRRQHKVEKFREIVKTF 267 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 +S+DFIVGFP ET+ D +MDL+ +I + ++S R T ++M + + Sbjct: 268 DRELDHWTLSTDFIVGFPTETEADHELSMDLLREIRPEKVNVTRFSKRPKTDAADM-KGL 326 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 +K ER + + RE + VG EVL + G + Q +V N+ Sbjct: 327 GGTIKKERSKAMSEAKREIVGEVYEGMVGDTCEVLCVQPGTGDSVKCRDPAYRQVIVQNA 386 Query: 443 KNHNI--GDIIKVRITDVKISTLYGELV 468 + I GD + IT + +G+ V Sbjct: 387 SEYGIEPGDFFEAEITASQTMYAFGKPV 414 >gi|307719795|ref|YP_003875327.1| hypothetical protein STHERM_c21230 [Spirochaeta thermophila DSM 6192] gi|306533520|gb|ADN03054.1| hypothetical protein STHERM_c21230 [Spirochaeta thermophila DSM 6192] Length = 442 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 125/446 (28%), Positives = 213/446 (47%), Gaps = 39/446 (8%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKV-YSFL 84 F+++ GC N D+ + + G+E V +ADLIV+NTC IR+ E + +FL Sbjct: 4 FYLEPLGCAKNQVDAEVIISLLLDAGWELVEDPAEADLIVVNTCGFIRDAKEESLETAFL 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R R + RI ++ GC+AQ G E+ V+ V+G + + + Sbjct: 64 FRER-FPDKRI--------LLTGCLAQRYGRELGEEMEEVDGVLGNADLSAVVDAARQVM 114 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRG 200 G+RVV T + R RKR ++ A++ + EGCD C++C +P RG Sbjct: 115 EGRRVVWTPQARRPAHVR---------RKRLLSFPGSAYVKVAEGCDNRCSYCAIPLIRG 165 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR ++V E + L+ G+ E+ L+ Q++ ++ GK G + LL + E++G Sbjct: 166 RFWSRPEEEIVQEVKGLLGEGIREVNLVAQDLGSY-GKERGG---SLFGLLERILELQGD 221 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R HP +++ G L+PY+ LP Q S R+L+ M RR A Y +++ Sbjct: 222 FWVRLLYIHPDHFPWEILRLMGQDRRLLPYVDLPFQHVSARLLRRMGRRGDAERYAELVH 281 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS--NM 378 +R PD+ + S F++GFPGE ++D A ++++ A F YSP GTP + Sbjct: 282 ALRDSLPDVVVRSTFLLGFPGEEEEDLDALARFLEEVRLDWAGFFVYSPEEGTPAEAWHR 341 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFN----DACVGQIIEVLIEKHGKEKGKLVGRSPW 434 E V+ ER ++ L Q + VG+ EVL+E+ + + + RS + Sbjct: 342 EEGRKAGVRLERAERRKEDLERLQEGITGERLERWVGRECEVLVEERIEGEDMALARSAF 401 Query: 435 LQS-----VVLNSKNHNIGDIIKVRI 455 VV++ + G +++ R+ Sbjct: 402 QAPEVDGLVVVHGEGLEPGRVVRARV 427 >gi|303247427|ref|ZP_07333699.1| RNA modification enzyme, MiaB family [Desulfovibrio fructosovorans JJ] gi|302491123|gb|EFL51015.1| RNA modification enzyme, MiaB family [Desulfovibrio fructosovorans JJ] Length = 447 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 112/408 (27%), Positives = 184/408 (45%), Gaps = 25/408 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +RF + + GC++N Y+S + + + G RV+ AD+ VL TC + +A + Sbjct: 14 KRFSLTTLGCKVNQYESRALAEAWEKAGLSRVDDPAAADVAVLVTCAVTARAEAESRRLA 73 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 ++ N + + G VV GC A + + V+V P L R Sbjct: 74 RQLARQINPQARPGAR--AVVTGCAAVVAPDAFA----ALGVIVVPDKAG-----LARRP 122 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 FG D + F L++ GY+R RG+ + IQ+GC C++C+VP RG +S Sbjct: 123 FGPD--DAAPRADAVFPDLAVT--GYDRARGL---VKIQDGCSHGCSYCIVPSGRGASVS 175 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG----L 260 R ++ EA +LI G EI L G N+ + G+ L+ + L + Sbjct: 176 RPFPDILAEAIRLITAGHREIGLTGINLGHY-GRDLEAPASFWDLLAALDDALAPRYGDT 234 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT-AYEYRQII 319 VRLR + P +++ + ++ P+LH+ +QS +L +M RR A + Sbjct: 235 VRLRLGSLDPAMLTEEGLSVLAAARLVCPHLHISLQSADPEVLVAMGRRADDANRVSSFV 294 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 D IR P + D + GFPGE+D F T D + + A F YS R GT + M Sbjct: 295 DAIRIKWPTFGLGCDVLTGFPGESDAAFGRTRDFLSGLPLTYAHVFPYSRRPGTRAAAMA 354 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIEKHGKEKG 426 Q+ + VK ER L++ ++ +F + + + V +E+H G Sbjct: 355 GQLSKAVKTERARELRELAAAKKAAFRERLSREARVVVALERHDPAVG 402 >gi|296081133|emb|CBI18159.3| unnamed protein product [Vitis vinifera] Length = 549 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 122/440 (27%), Positives = 210/440 (47%), Gaps = 50/440 (11%) Query: 44 MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103 M + GY ++ ++ADL ++NTC ++ + + + + + R+ K + Sbjct: 1 MAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITKGRSSKKP---------L 51 Query: 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163 VVAGCV Q G L+ V++V G Q R+ E++E G V + L Sbjct: 52 VVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLNRKT------L 102 Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVC 223 +D RK L I GC CT+C + RG S ++ +V R +I +GV Sbjct: 103 PALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTVIADGVK 162 Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-SEIK---------GLVRLRYTTSHPRDM 273 EI L ++ A+ G+ + T LL ++ SE+ G+ Y H ++M Sbjct: 163 EIWLSSEDTGAY-GRDIG---VTLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLKEM 218 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 + ++ H + +LH+PVQSGSD IL +MNR +T E+R ++D + + P + I++ Sbjct: 219 A--VVLRH---PCVYSFLHVPVQSGSDAILSAMNREYTVTEFRTVVDTLTELVPGMQIAT 273 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 D I GFPGETD++F T+ L+ + + Q ++ PR GTP + M ++V V Sbjct: 274 DIICGFPGETDEEFAQTVSLIQEYRFPQVHISQFYPRPGTPAARM-KKVPSAV------- 325 Query: 394 LQKKLREQQVSFN-----DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIG 448 ++K+ RE F + G++ + I + + LVG + V++ + +G Sbjct: 326 VKKRSRELTSIFEAFTPYNGMEGRVERIWISEIATDGIHLVGHTKGYMQVLVVAPRSLMG 385 Query: 449 DIIKVRITDVKISTLYGELV 468 V+IT V +++GEL+ Sbjct: 386 TSAIVKITSVGRWSVFGELI 405 >gi|291276741|ref|YP_003516513.1| MiaB-like tRNA modifying enzyme [Helicobacter mustelae 12198] gi|290963935|emb|CBG39772.1| Putative MiaB-like tRNA modifying enzyme [Helicobacter mustelae 12198] Length = 413 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 106/385 (27%), Positives = 192/385 (49%), Gaps = 36/385 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F K++GC+ N++D+ M + + + ++AD+IV+N+C + A V S++ Sbjct: 2 KVFFKTFGCRTNLFDTQVMRQNL--KDFVVCENEEEADIIVVNSCTVTNGADAGVRSYVN 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE----LLE 141 ++ N +I GC A+ +G+ + + N+V G + + LL Sbjct: 60 KM-NRSGKKI--------YFTGCGAKTQGKNLFDK----NLVFGSFGHTHKEKINDFLLA 106 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-VTAFLTIQEGCDKFCTFCVVPYTRG 200 + RF E++ + I + G V AF+ IQEGCD C++C++P RG Sbjct: 107 KGRF---------FYEERSDASHIDTTLVSEFVGKVRAFIKIQEGCDFACSYCIIPSVRG 157 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 I S ++V+++ L D+GV E+ L G NV ++ GK + L++ +S+IKG+ Sbjct: 158 ISRSYPQARVLEQIGILADHGVSEVVLTGTNVGSY-GKDFGS---NIAKLIHEISKIKGI 213 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R+R + P + + ++ + D L +LH+ +Q SDR+L+ MNR + R +++ Sbjct: 214 LRIRIGSLEPSQIDEEFLELL-EGDFLERHLHIALQHSSDRMLEIMNRHNRVASDRALLE 272 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +I AI +DFIVG PGE+ + ++ + ++ F YS R TP + M Sbjct: 273 KI--ADRGFAIGTDFIVGHPGESVQVWEEALENLTQLPLTHIHPFIYSIRDNTPSAKMKN 330 Query: 381 QVDENVKAERLLCLQKKLREQQVSF 405 + +V ERL + + E+ SF Sbjct: 331 TIRGDVAKERLHIINALVAEKNFSF 355 >gi|218961714|ref|YP_001741489.1| putative 2-alkenal reductase [Candidatus Cloacamonas acidaminovorans] gi|167730371|emb|CAO81283.1| putative 2-alkenal reductase [Candidatus Cloacamonas acidaminovorans] Length = 443 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 105/444 (23%), Positives = 202/444 (45%), Gaps = 35/444 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++ + S GC N+ DS R+ + S G R + ++A+++++N+C A E++ L Sbjct: 3 KYTIVSLGCPKNLVDSERLVAIMESYGMIRTDVWEEANILLINSCSFIFNALEELNCLLA 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTY-----YRLPELL 140 + N I + +VV GCV E++ P V+ + + + Y +L Sbjct: 63 DVINATEKDITK-----IVVTGCVMNRGYEQLKDYYPEVDAWIPLKDFAAFENYLRENIL 117 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 KR+ T +R+ + DG Y +L I +GC+ C++C++PY RG Sbjct: 118 PSLETPKRLSYT--------QRVHLEDGNY-------VYLRIADGCNNKCSYCMIPYIRG 162 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 ++S + +++EA+ + + G E+ L+ Q+ ++ G + G+K +L+ +L Sbjct: 163 KQVSEPIETLIEEAKSMQEYGR-ELILIAQDTCSY-GTDIYGKK-ALPELIEALHNQTDY 219 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R HP + + L+PY +P+Q S +I+K+MNRR + E +++ Sbjct: 220 DWIRILYLHPDNFELQWTELWKKFPKLLPYFDVPIQQVSPKIIKAMNRRKSYQELKELFF 279 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 I+ P+ + +V +P ET +D + +I + Q F YSP N+ + Sbjct: 280 HIQQEIPNAVFRTTLMVDYPNETKEDLELLEKFLSEIPFLQGGVFAYSPEAKDLKDNIYD 339 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS--- 437 + D + + + K + + + VG I LIE + + VGR W Q+ Sbjct: 340 EFDWKKSKKLMFAWEDKFYQIRNQLLEKYVGTIQSALIEDYDPYSEQYVGRL-WFQAPEI 398 Query: 438 ---VVLNSKNHNIGDIIKVRITDV 458 V ++ + +++V I DV Sbjct: 399 DGCVYIDKLPADNNSLVEVEIVDV 422 >gi|325297732|ref|YP_004257649.1| Ribosomal protein S12 methylthiotransferase rimO [Bacteroides salanitronis DSM 18170] gi|324317285|gb|ADY35176.1| Ribosomal protein S12 methylthiotransferase rimO [Bacteroides salanitronis DSM 18170] Length = 433 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 121/450 (26%), Positives = 213/450 (47%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ + GY+ + + ++ V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEKLMKQLEANGYKVTHDSGNPQGEIAVINTCGFIGDAKEESINTI---- 65 Query: 89 NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ + KE G L + V GC+++ +++ P V+ G + ELL A GK Sbjct: 66 -LEFCQAKEEGKLKKLFVMGCLSERYLKDLQDEIPQVDKYYGK---FNWNELL--ADLGK 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y + ER Y A+L I EGCD+ C +C +P G +SR + Sbjct: 120 -----PYHPDLAIERHLTTPKHY-------AYLKISEGCDRKCAYCAIPIITGRHVSRPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE R L+ GV E ++ Q + + G+D +K +L+ ++ I G+ +R Sbjct: 168 DEILDEVRLLVSQGVKEFQVIAQELTYY---GVDLYKKQMLPELIEKMAAIPGVKWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + D + Y+ + +Q SD +L+ MNR T E ++I++ R Sbjct: 225 YAYPARFPKDLFRVMRENDNVCKYMDIALQHISDNMLQRMNRHVTKAETYELIEQFRKEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385 P I + + +VGFPGET+ DF + V K+ + + +F YS GT + + V + Sbjct: 285 PGIHLRTTLMVGFPGETEQDFEELKEFVRKVRFDRMGAFAYSEEEGTYSAKHYKDDVPQT 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440 VK +RL L + +E + + +G+I +V+I++ KE +GR SP + VL Sbjct: 345 VKQQRLDELMEMQQEISNELSHSKIGKIFQVVIDR--KEGEYYIGRTEFDSPEVDPEVLI 402 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468 K +IG + ++ D LY L+ Sbjct: 403 KDEGKLLHIGSFHRAKVYDADDFDLYATLL 432 >gi|242309031|ref|ZP_04808186.1| tRNA modifying enzyme [Helicobacter pullorum MIT 98-5489] gi|239524455|gb|EEQ64321.1| tRNA modifying enzyme [Helicobacter pullorum MIT 98-5489] Length = 424 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 119/432 (27%), Positives = 207/432 (47%), Gaps = 50/432 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDM---FFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 R F K++GC+ N++D+ M + F YE +D+D+IV+N+C + A V + Sbjct: 6 RVFFKTFGCRTNLFDTQVMINSLIDFIQTPYE-----EDSDIIVINSCTVTNGADSGVRN 60 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 ++ R++N EG + GC + +G+++L++ I G + ++L++ Sbjct: 61 YVNRLQN-------EGKK--IFFTGCGVKTQGKDLLQKGLIFGAF-GHSYKEDINKILKQ 110 Query: 143 ARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 ++ + +E E L +I+ + R AF+ IQEGCD C++C++P RG Sbjct: 111 SQ--------SFYLEGDLESLDKNIITDFVGKSR---AFIKIQEGCDFACSYCIIPSVRG 159 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S +++++ +KL NG E L G N+ +W GK L GE T LL S+ I + Sbjct: 160 KARSFPKEKIINQIKKLTQNGFSEFILTGTNMGSW-GKDL-GENIT--KLLESICAIPQV 215 Query: 261 VRLRYTTSHP----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 RLR + P +D D L D + +LH+ +Q S +LK MNR++T + Sbjct: 216 KRLRLGSLEPSQITQDFLDFL-----DNPKIEKHLHIALQHTSPFMLKLMNRQNTFEKDL 270 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++ I + A+ SDFIVG P E+ + + + SF YSPR T + Sbjct: 271 ELFHTI--AQKGFALGSDFIVGHPQESQKIWEEAFKNFEMLPLTHLHSFIYSPRSNTLSA 328 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSF--NDACVGQIIEVLIE--KHGKEKGKLVGRS 432 + E + N+ ER +++K+ + +F N A + +LIE K +G Sbjct: 329 TLKETIPGNIARERKKNIEEKIAQNNFAFRQNLAHTKTPLNILIEDCKFENNTYTSLGFD 388 Query: 433 PWLQSVVLNSKN 444 + + ++SKN Sbjct: 389 EYYNKIQISSKN 400 >gi|254486066|ref|ZP_05099271.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Roseobacter sp. GAI101] gi|214042935|gb|EEB83573.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Roseobacter sp. GAI101] Length = 456 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 119/454 (26%), Positives = 204/454 (44%), Gaps = 46/454 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 33 SLGCPKALVDSERILTRLRAEGYGVSPDYAGADAVIVNTCGFLDSAKAESLDAIGEA--- 89 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ AE + I P + V GP Y ++V+ Sbjct: 90 ----LKENG--RVIVTGCLG-AEPDYIREHHPRILAVTGPHQY-------------EQVL 129 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D ++ D F L R + +L I EGC+ C FC++P RG SR Sbjct: 130 DAVHAAVPPSPDPFIDLLPAQAVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGRLQSRP 188 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKG 259 ++ EA KL+ GV E+ ++ Q+ +A+ G+D G + +DL L + Sbjct: 189 AHAILREAEKLVQGGVKELLVISQDTSAY---GVDIKHAEDRGHRAHITDLARDLGSLGA 245 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + + A G +++PYL +P Q +LK M R A + I Sbjct: 246 WVRLHYVYPYPHVRNLIPLMADG---LVLPYLDIPFQHAHPDVLKRMARPAAAAKTLDEI 302 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R PDI + S FIVG+PGET+ +F+ +D +D+ + F+Y G + + Sbjct: 303 AAWRDTCPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVDGARSNALP 362 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQS 437 + V + VK +R +K + + +A VG+ ++V+I++ + + +P + Sbjct: 363 DHVPDEVKQDRWNRFMEKAQAISEAKLEAKVGRRMDVIIDEIDGDAATCRTKADAPEIDG 422 Query: 438 VVLNSKNH---NIGDIIKVRITDVKISTLYGELV 468 + + ++GDI+ V + + L+G +V Sbjct: 423 NLFIDEGFEGLSVGDIVTVEVEEAGEYDLWGRVV 456 >gi|254882029|ref|ZP_05254739.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319640963|ref|ZP_07995671.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_40A] gi|254834822|gb|EET15131.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317387408|gb|EFV68279.1| Fe-S oxidoreductase [Bacteroides sp. 3_1_40A] Length = 432 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 120/448 (26%), Positives = 209/448 (46%), Gaps = 39/448 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 GC N+ DS ++ + GY+ + D ++ V+NTC A E+ + + L Sbjct: 12 GCSKNLVDSEKLMRQLEANGYKVTHDSDKPQGEIAVINTCGFIGDAKEESINMI-----L 66 Query: 91 KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + + KE G L + V GC+++ +E+ P V+ G + ELL A GK Sbjct: 67 EFCQAKEEGKLKKLYVMGCLSERYLKELALEIPQVDKFYGK---FNWNELL--ADLGKA- 120 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 Y E ER Y A+L I EGCD+ C++C +P G ISR + + Sbjct: 121 ----YKSEFAIERTLTTPHHY-------AYLKISEGCDRKCSYCAIPIITGRHISRPMEE 169 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTS 268 ++DE + L+ GV E ++ Q + + G+D K +L+ ++ + G+ +R + Sbjct: 170 IIDEVKLLVSEGVKEFQIIAQELTYY---GVDLYKSQKLPELIERIANVPGVEWIRLHYA 226 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P + L + + D + Y+ + +Q SD +L M R + E ++I++ R P Sbjct: 227 YPAHFPEELFRVMREHDNVCKYMDIALQHISDNMLNKMRRHVSKAETYELIEKFRREVPG 286 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVK 387 I + + +VG PGET++DF + V K+ + + +F YS GT + E + VK Sbjct: 287 IHLRTTLMVGHPGETEEDFEELKEFVKKVRFDRMGAFAYSEEEGTFAAKEYEDSISHEVK 346 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--- 440 +RL L +E + +G+ +V+I++ KE +GR SP + VL Sbjct: 347 QQRLDELMALQQEIAGELSQTKIGKEFKVIIDR--KEGDYYIGRTQFDSPEVDPEVLIKA 404 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG+ KV+IT LY ++ Sbjct: 405 DDEYLKIGEFYKVKITAADDFDLYASIL 432 >gi|295836194|ref|ZP_06823127.1| 2-methylthioadenine synthetase [Streptomyces sp. SPB74] gi|197695299|gb|EDY42232.1| 2-methylthioadenine synthetase [Streptomyces sp. SPB74] Length = 499 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 122/460 (26%), Positives = 191/460 (41%), Gaps = 62/460 (13%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G++ V AD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLEADGWDLVEDAAHADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 L +LK G VV GC+A+ G+++ P + V+G Y + + L Sbjct: 61 VDALLEANDLKG----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYTNISDRL 116 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----------------------- 177 + G + ++ D+ + L + GV Sbjct: 117 QTILSGG--IHASHTPRDRRKLLPLSPAARQDAPGVALPGHAQQAPEPEDAAPADLPDGL 174 Query: 178 -------------------AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218 A + + GCD+ C+FC +P RG ISR S V+ E R L Sbjct: 175 APASGPRAPLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLAETRWLA 234 Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278 GV E+ L+ +N N GK L G+ LL L+ + G+ R+R + P + LI Sbjct: 235 GQGVREVMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAETRPGLI 292 Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338 + PY L Q + +L++M R + ++D+IR+ P + S+FIVG Sbjct: 293 DVLTSTPKIAPYFDLSFQHSAPGVLRAMRRFGGTDSFLGLLDQIRAKAPQAGVRSNFIVG 352 Query: 339 FPGETDDDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 FPGET++D T +D IG F YS GT + ++ E V AERL Sbjct: 353 FPGETEEDVAELERFLTSARLDAIGV-----FGYSDEEGTEAATYATKLPEEVVAERLAR 407 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 + + E + +G+ +EVL+E E +GR P Sbjct: 408 VARLAEELTAQRAEERIGETMEVLVESAATEDEPALGRGP 447 >gi|150005789|ref|YP_001300533.1| putative Fe-S oxidoreductase [Bacteroides vulgatus ATCC 8482] gi|238065291|sp|A6L5E7|RIMO_BACV8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|149934213|gb|ABR40911.1| putative Fe-S oxidoreductase [Bacteroides vulgatus ATCC 8482] Length = 432 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 120/448 (26%), Positives = 209/448 (46%), Gaps = 39/448 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 GC N+ DS ++ + GY+ + D ++ V+NTC A E+ + + L Sbjct: 12 GCSKNLVDSEKLMRQLEANGYKVTHDSDKPQGEIAVINTCGFIGDAKEESINMI-----L 66 Query: 91 KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + + KE G L + V GC+++ +E+ P V+ G + ELL A GK Sbjct: 67 EFCQAKEEGKLKKLYVMGCLSERYLKELALEIPQVDKFYGK---FNWNELL--ADLGKA- 120 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 Y E ER Y A+L I EGCD+ C++C +P G ISR + + Sbjct: 121 ----YKSEFAIERTLTTPHHY-------AYLKISEGCDRKCSYCAIPIITGRHISRPMEE 169 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTS 268 ++DE + L+ GV E ++ Q + + G+D K +L+ ++ + G+ +R + Sbjct: 170 IIDEVKLLVSEGVKEFQIIAQELTYY---GVDLYKSQKLPELIERIANVPGVEWIRLHYA 226 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P + L + + D + Y+ + +Q SD +L M R + E ++I++ R P Sbjct: 227 YPAHFPEELFRVMREHDNVCKYMDIALQHISDNMLNKMRRHVSKAETYELIEKFRREVPG 286 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVK 387 I + + +VG PGET++DF + V K+ + + +F YS GT + E + VK Sbjct: 287 IHLRTTLMVGHPGETEEDFEELKEFVKKVRFDRMGAFAYSEEEGTFAAKEYEDSISHEVK 346 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--- 440 +RL L +E + +G+ +V+I++ KE +GR SP + VL Sbjct: 347 QQRLDELMALQQEIAGELSQTKIGKEFKVIIDR--KEGDYYIGRTQFDSPEVDPEVLIKA 404 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG+ KV+IT LY ++ Sbjct: 405 DEEYLKIGEFYKVKITAADDFDLYASIL 432 >gi|289449481|ref|YP_003474956.1| ribosomal protein S12 methylthiotransferase RimO [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184028|gb|ADC90453.1| ribosomal protein S12 methylthiotransferase RimO [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 453 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 111/439 (25%), Positives = 195/439 (44%), Gaps = 19/439 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M D G V+ A++I++NTC E A + + + Sbjct: 12 SLGCPKNLVDSEYMADRMAKAGLCLVDDPAKAEVIIVNTCGFIESAKVEAIDTILAMAEY 71 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K + K ++V GC++Q ++ + P ++ ++G Y + ++ Sbjct: 72 KTDKCK-----YLIVTGCLSQRYHGDMKKDLPEIDAILGVGAYGEIVNAIDTLYERDAAT 126 Query: 151 DTDYSVEDKFERLSIVDGGYNRKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + + R D N + G A+L I EGC C +C +P RG ISR + Sbjct: 127 IAEAVPFCEVRRGHTTDHFVNFRTPSTGSFAYLKIAEGCSNTCAYCAIPGIRGHMISRPM 186 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + EA L+ V E+ ++ Q+ A+ G L E+ +LL + + +R Sbjct: 187 EDITAEADNLLQQNVKELIIVAQDTTAY-GVDLYKER-KLPELLQKICALPYDFHIRLLY 244 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 + M++ L+ D + Y+ +P+Q SD +LK M R+ T +I+ R P Sbjct: 245 CYSDGMTEELLTVLADEPKICHYIDMPIQHASDHVLKLMGRKDTKENIYRIMHTWRQRIP 304 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 DI + +VGFPGET+ DF + L+ + + + F++SP GT M +QV + Sbjct: 305 DIVFRTTVMVGFPGETEADFNELIQLIKDLRFERLGCFEFSPEEGTKAVRMPDQVPAEIA 364 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS--------PWLQSVV 439 +R L + + +FN++ + I IE ++ +GRS P L ++ Sbjct: 365 KQRYETLMEVQNKISQAFNESRLHTITTARIEGITEDGIFYLGRSYAESPDIDPMLY-IL 423 Query: 440 LNSKNHNIGDIIKVRITDV 458 + N G+++KV I +V Sbjct: 424 AKQRELNPGEMVKVEIIEV 442 >gi|116753688|ref|YP_842806.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT] gi|116665139|gb|ABK14166.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT] Length = 411 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 117/444 (26%), Positives = 211/444 (47%), Gaps = 58/444 (13%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 RF +++YGC N +S+ + + G++ + +D +++++LNTC + + + L Sbjct: 2 RFCIETYGCTSNTGNSMELRGALIAHGHQE-SDLDGSEVVILNTCAVTSRTER---NMLR 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA-- 143 RI LK R+ +VAGC+ A +PEL+E Sbjct: 58 RIGELKGRRL--------IVAGCLPAA-----------------------IPELIESVEC 86 Query: 144 -----RFG-KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 R+G RV+D E LS + + I EGC C +C+V Sbjct: 87 VGVLNRWGIDRVLDALGRSEHPTSELS----ASCLPGSLCGVVNISEGCLGACAYCIVKR 142 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 RG SR ++ + +LI +G EI L Q+ A+ G D + +LL LS+I Sbjct: 143 ARGTLRSREPHEIEKDVMRLISSGAVEIQLTSQDAGAY---GCD-IGASLPELLDLLSDI 198 Query: 258 KGLVRLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G +R +P + D L+ ++ + + + ++HLP+QSGSDR+L+ M R +T+ + Sbjct: 199 DGAFMIRVGMMNPNSVLKILDDLLDSYKN-EKIYRFIHLPLQSGSDRVLERMRRGYTSDD 257 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + ++ RS P+I++++D I GFPGE+D DFR T D++ + ++S R T Sbjct: 258 FVNVVSAFRSRYPEISLTTDVITGFPGESDQDFRMTEDVIRITQPDKVNVTRFSRRPHTL 317 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 + M+ + + +K ER + + + + N +G+ ++VL+ + G+ G + R+ Sbjct: 318 -AFMMHDMPDRIKKERSRRVTELWMDIALIRNRRYIGETLDVLVTEQGR-AGTMKARTRN 375 Query: 435 LQSVVLNSKNHNIGDIIKVRITDV 458 VV++ + + G +K R D Sbjct: 376 YTGVVVHGLS-SPGKWVKARAIDA 398 >gi|126739931|ref|ZP_01755622.1| RNA modification enzyme, MiaB-family protein [Roseobacter sp. SK209-2-6] gi|126719163|gb|EBA15874.1| RNA modification enzyme, MiaB-family protein [Roseobacter sp. SK209-2-6] Length = 472 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 128/462 (27%), Positives = 206/462 (44%), Gaps = 49/462 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 37 SLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLDAIGEA--- 93 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ AE + I P ++ V GP Y ++V+ Sbjct: 94 ----LKENGK--VIVTGCLG-AEPDYIREHHPRIHAVTGPHQY-------------EQVL 133 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D +S + + L G R + +L I EGC+ C FC++P RG SR Sbjct: 134 DAVHSAVPPSPNPYVDLLPAAGVKLTPRHFS-YLKISEGCNHKCKFCIIPDMRGKLASRP 192 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 + V+ EA KL+D GV E+ ++ Q+ +A W+G+ + S L L+ Sbjct: 193 VHAVLREADKLVDAGVRELLVISQDTSAYGLDRKYSTHDWKGEEVRSHILDLSRELGKLA 252 Query: 256 EIKGL-VRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAY 313 L VRL Y +P LI D D L+PYL +P Q +L+ M R A Sbjct: 253 PADELWVRLHYVYPYPHVRE--LIPLMADPDNALLPYLDIPFQHAHPDVLRRMARPAAAA 310 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + I+ R PDI + S FIVG+PGET+ +F+ +D +D+ + FKY G Sbjct: 311 KTLDEINAWRDTCPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYENVDGA 370 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVG 430 +++ + V E VK ER +K + + +A VGQ ++V+ I+ G + Sbjct: 371 RSNDLPDHVPEEVKQERWERFMEKAQAISEAKLEAKVGQTMQVIVDDIDGDGIATCRTKA 430 Query: 431 RSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGELVV 469 +P + + + +GDI+ V + + L+G L + Sbjct: 431 DAPEIDGNLFIDEGVEELKLGDIVTVEVDEAGEYDLWGTLTI 472 >gi|57238477|ref|YP_179608.1| putative tRNA modifying protein [Campylobacter jejuni RM1221] gi|81557413|sp|Q5HSX7|RIMO_CAMJR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|57167281|gb|AAW36060.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter jejuni RM1221] gi|315058909|gb|ADT73238.1| Ribosomal protein S12p Asp88 methylthiotransferase [Campylobacter jejuni subsp. jejuni S3] Length = 439 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 105/375 (28%), Positives = 186/375 (49%), Gaps = 21/375 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ S GC N+ DS M YE + AD+I++NTC + A ++ + Sbjct: 3 KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVIIVNTCGFIDSAKKES---IN 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y R+ E++ + Sbjct: 58 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERVDEMILKKT- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ Y + +R I+ G + AF+ I EGC++ C+FC +P +G SR Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +S ++ E + L+ G + + + Q+ +++ GEK L+ + +IKG+ R Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P S+ LIK ++ + Y +P+Q SD +LK M R + +++++ ++S Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ + + FIVG PGE++ DF + V G+ + F YS T +M EQV Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVSFK 341 Query: 386 VKAERLLCLQKKLRE 400 V +RL ++K + E Sbjct: 342 VINKRLKIIEKIVNE 356 >gi|171058738|ref|YP_001791087.1| ribosomal protein S12 methylthiotransferase [Leptothrix cholodnii SP-6] gi|238066365|sp|B1Y223|RIMO_LEPCP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|170776183|gb|ACB34322.1| MiaB-like tRNA modifying enzyme YliG [Leptothrix cholodnii SP-6] Length = 466 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 126/474 (26%), Positives = 202/474 (42%), Gaps = 67/474 (14%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS + ++GY + ADL+++NTC + A + +G Sbjct: 24 SLGCPKALTDSELILTQLSAEGYATSKTFQGADLVIVNTCGFIDDAVRESLDTIGEA--- 80 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLERARFG 146 + E G V+V GC+ G+ + + P V V GP Sbjct: 81 ----LAENGK--VIVTGCLGAKTGDGGGNLVRQMHPSVLAVTGPHAT------------- 121 Query: 147 KRVVDTDYS----VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + V+D + D F L + G A+L I EGC+ C+FC++P RG Sbjct: 122 QEVMDAVHQHVPKPHDPFVDL-VPPAGIKLTPKHYAYLKISEGCNHRCSFCIIPSMRGDL 180 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR + V+ EA++L + GV E+ ++ Q+ +A W GK + K DL+ Sbjct: 181 VSRPIGDVLTEAQRLFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPV---KTRMLDLV 237 Query: 252 YSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 L E+ VRL Y +P + A G +++PYL +P Q +LK M Sbjct: 238 AQLGELARKHGAWVRLHYVYPYPHVDEVLPLMAEG---LVLPYLDVPFQHAHPDVLKRMK 294 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + + + + R P I + S FI GFPGET+ +F +D + + +A F Y Sbjct: 295 RPASGERNLERLLKWREACPQIVVRSTFIAGFPGETEAEFEYLLDFLKEAQIDRAGCFAY 354 Query: 368 SPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH---GKE 424 SP G P + + + + V+ ER + VG ++VL++ G++ Sbjct: 355 SPIEGAPANLLDGALPDAVREERRARFMAVAEAVSTAKLQRRVGSSMQVLVDSAPAMGRK 414 Query: 425 KGKLVGRS----PWLQSVV------LNSKNHNIGDIIKVRITDVKISTLYGELV 468 G VGRS P + V SK +G+ +VRI + L GEL+ Sbjct: 415 GG--VGRSYADAPEIDGTVKILPPSKASKTMKVGEFSRVRIVGSQGHDLIGELI 466 >gi|298529707|ref|ZP_07017110.1| MiaB-like tRNA modifying enzyme YliG [Desulfonatronospira thiodismutans ASO3-1] gi|298511143|gb|EFI35046.1| MiaB-like tRNA modifying enzyme YliG [Desulfonatronospira thiodismutans ASO3-1] Length = 430 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 114/442 (25%), Positives = 204/442 (46%), Gaps = 36/442 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYS 82 + + S GC N+ D+ E++ + Y V+ ++D++++NTC IR E + + Sbjct: 3 KVYTHSLGCPKNMVDT---ENILSGLKEHYFAVDRPFESDVVLINTCAFIRPAVEESLET 59 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +++K + L+VV GC+ G + R P ++ V LP + Sbjct: 60 IFSAAQDVKGLSQRP----LLVVTGCLVSRYGTGLGREIPEADMFVPIARQAELPGKI-L 114 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G++V + E + G + A++ I EGC+ C FC +P RG Sbjct: 115 YRLGRKV---------EAEAPGVRHGPFKS----FAYVKISEGCNNRCAFCTIPSIRGKL 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR +V+ EA LID G E+ L+ Q+ A+ G+ L G + S L L+ ++GL+R Sbjct: 162 RSRPEHEVIQEAGHLIDQGAGELVLVSQDSTAY-GRDL-GCRRGLSSLAEKLAGLEGLLR 219 Query: 263 LRYTTSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 LR +P ++D L+ +L +PY +P+Q + +LK M R + ++I R Sbjct: 220 LRIMYLYPSGLNDGLLARLAELGPPFVPYFDVPLQHANPELLKKMGRPFQQ-DPMEVIRR 278 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 IR+ P AI + I G+PGE + FR ++ V + F + P GT + Q Sbjct: 279 IRNYFPGAAIRTTLITGYPGEEERHFRELLEFVRQARVQHLGVFPFYPEEGTRAAGFPGQ 338 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKEKGKLVGRSPWLQS--- 437 + + VK ER + ++ + + G+ +++L+ + H + G GR+ W Q+ Sbjct: 339 IPDEVKNERQRLIMQEQKRVSREYLKGFPGESLDILVDDPHPEWPGLYTGRA-WFQAPEV 397 Query: 438 ---VVLNSKNHNIGDIIKVRIT 456 ++ G +++ IT Sbjct: 398 DGLTYISGPGVGPGKMVRAEIT 419 >gi|294776168|ref|ZP_06741657.1| MiaB-like protein [Bacteroides vulgatus PC510] gi|294449991|gb|EFG18502.1| MiaB-like protein [Bacteroides vulgatus PC510] Length = 432 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 120/448 (26%), Positives = 209/448 (46%), Gaps = 39/448 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 GC N+ DS ++ + GY+ + D ++ V+NTC A E+ + + L Sbjct: 12 GCSKNLVDSEKLMRQLEANGYKVTHDSDKPQGEIAVINTCGFIGDAKEESINMI-----L 66 Query: 91 KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + + KE G L + V GC+++ +E+ P V+ G + ELL A GK Sbjct: 67 EFCQAKEEGKLKKLYVMGCLSERYLKELALEIPQVDKFYGK---FNWNELL--ADLGKA- 120 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 Y E ER Y A+L I EGCD+ C++C +P G ISR + + Sbjct: 121 ----YKSEFAIERTLTTPHHY-------AYLKISEGCDRKCSYCAIPIITGRHISRPMEE 169 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTS 268 ++DE + L+ GV E ++ Q + + G+D K +L+ ++ + G+ +R + Sbjct: 170 IIDEVKLLVSEGVKEFQIIAQELTYY---GVDLYKSQKLPELIERIANVPGVEWIRLHYA 226 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P + L + + D + Y+ + +Q SD +L M R + E ++I++ R P Sbjct: 227 YPAHFPEELFRVMREHDNVCKYMDIALQHISDNMLNKMRRHVSKAETYELIEKFRREIPG 286 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVK 387 I + + +VG PGET++DF + V K+ + + +F YS GT + E + VK Sbjct: 287 IHLRTTLMVGHPGETEEDFEELKEFVKKVRFDRMGAFAYSEEEGTFAAKEYEDSISHEVK 346 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--- 440 +RL L +E + +G+ +V+I++ KE +GR SP + VL Sbjct: 347 QQRLDELMALQQEIAGELSQTKIGKEFKVIIDR--KEGDYYIGRTQFDSPEVDPEVLIKA 404 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG+ KV+IT LY ++ Sbjct: 405 DEEYLKIGEFYKVKITAADDFDLYASIL 432 >gi|305432245|ref|ZP_07401408.1| 2-methylthioadenine synthetase [Campylobacter coli JV20] gi|304444593|gb|EFM37243.1| 2-methylthioadenine synthetase [Campylobacter coli JV20] Length = 439 Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 106/380 (27%), Positives = 185/380 (48%), Gaps = 31/380 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ S GC N+ DS M YE + AD++++NTC + A ++ + Sbjct: 3 KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y R+ E++ + Sbjct: 58 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRG 200 + F + + G N KR +T AF+ I EGC++ C+FC +P +G Sbjct: 114 ------------NLFSNSTYLQGE-NSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG 160 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR +S ++ E + L+ G + + + Q+ +++ GEK L+ + +I+G+ Sbjct: 161 KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIEGI 218 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R +P S+ LIK + + Y +P+Q SD +LK M R + +++++ Sbjct: 219 KAARILYLYPTSASEALIKRIIASKIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLN 278 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++S PD + + FIVG PGE+D DF + + G+ + F YS T +M E Sbjct: 279 LMKSA-PDSFLRTGFIVGHPGESDADFEEFCEFIKDFGFDRVSVFAYSKEEDTAAFDM-E 336 Query: 381 QVDENVKAERLLCLQKKLRE 400 QV V +RL ++K + E Sbjct: 337 QVPFKVINKRLKIIEKIVDE 356 >gi|302542094|ref|ZP_07294436.1| 2-methylthioadenine synthetase [Streptomyces hygroscopicus ATCC 53653] gi|302459712|gb|EFL22805.1| 2-methylthioadenine synthetase [Streptomyces himastatinicus ATCC 53653] Length = 498 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 125/474 (26%), Positives = 204/474 (43%), Gaps = 47/474 (9%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + G+E V DAD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLADDGWELVEQAADADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----------- 129 L +LK+ G VV GC+A+ G+++ P + V+G Sbjct: 61 VDALLEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISGRL 116 Query: 130 -------------PQTYYRLPELLERARFGKRVVD-----TDYSVEDKFERLSIVDGG-- 169 P+ +L + R V D ED + ++ G Sbjct: 117 QTILSGGIHASHTPRDRRKLLPISPAERQDNSAVALPGHAQDTPPEDLPDGVAPASGPRA 176 Query: 170 -YNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226 R+ G + +++ GCD+ C+FC +P RG ISR S V+ E R L + GV EI Sbjct: 177 PLRRRLGNSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEIM 236 Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286 L+ +N N GK L G+ LL L+ + G+ R+R + P +M LI + Sbjct: 237 LVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERIRVSYLQPAEMRPGLIDVLTSTEK 294 Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 + PY L Q + +L+ M R + ++++ IR P S+FIVGFPGET+DD Sbjct: 295 VAPYFDLSFQHSAPGVLRRMRRFGDTDRFLELLETIRGKAPQAGARSNFIVGFPGETEDD 354 Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406 + + F YS GT + ++VD + AERL + + E Sbjct: 355 LAELERFISEARLDAIGVFGYSDEDGTEAAGYEDKVDPDEVAERLEHISRLAEELTAQRA 414 Query: 407 DACVGQIIEVLIEK---HGKEKGKLVGRSPWL--QSVVLNSKNHNIGDIIKVRI 455 D +G+ + VL+++ G G+ ++P Q+++ S G +++ ++ Sbjct: 415 DERLGETVTVLVDEIDDTGDVLGRAAHQAPETDGQTLLRTSARPAAGRMVEAKV 468 >gi|194334320|ref|YP_002016180.1| MiaB-like tRNA modifying enzyme YliG [Prosthecochloris aestuarii DSM 271] gi|238066450|sp|B4S8Z6|RIMO_PROA2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|194312138|gb|ACF46533.1| MiaB-like tRNA modifying enzyme YliG [Prosthecochloris aestuarii DSM 271] Length = 433 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 117/401 (29%), Positives = 184/401 (45%), Gaps = 33/401 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSF 83 Q F+ S GC N DS R+ G + DDAD+I++NTC I + E + Sbjct: 6 QSIFLLSLGCSKNTVDSERLIRQAELNGLHFTDQADDADIIIINTCGFIADAKEESINEI 65 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L N IK + V GC++ E+ P V+ G L E++ Sbjct: 66 LAATEKRHNGEIK-----ALFVMGCLSALYSRELRAELPEVDHFFGTSD---LEEIIS-- 115 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 V+ Y + ER + Y A+L I EGC + C+FC +P RG Sbjct: 116 -----VLGGSYRPSNIHERTLLTPPHY-------AWLKIAEGCSRTCSFCAIPKMRGRYR 163 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVR 262 S + ++ EA L+ NGV E+ ++ Q++ + G D E+ +DLL L+ + +R Sbjct: 164 SEPIERLEKEASLLLKNGVRELNIISQDITQY-GWDFD-ERSHLNDLLKKLAAQEFSWIR 221 Query: 263 L--RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 L Y P D+ D + + H + + YL +PVQ SDRILKSM R +++ Sbjct: 222 LLYAYPLHFPLDVIDTM-REHAN---ICNYLDMPVQHISDRILKSMQRGIDKKGTIGLLE 277 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR PDI + + IVG+PGETD +F ++ V ++ + + F YS T LE Sbjct: 278 SIRKKNPDIRLRTTMIVGYPGETDREFDELLEFVAQLRFDRLGCFPYSHEEHTSAFKHLE 337 Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + E +K ER+ L + N G++++VL+++ Sbjct: 338 DDIPEKIKKERVEALMELQESIAAERNRELEGRVMKVLVDE 378 >gi|303235727|ref|ZP_07322334.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella disiens FB035-09AN] gi|302484174|gb|EFL47162.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella disiens FB035-09AN] Length = 433 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 118/455 (25%), Positives = 207/455 (45%), Gaps = 50/455 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK----VYSFL 84 + GC N+ DS + F + GY+ V+ + + ++ V+NTC + A E+ + F+ Sbjct: 10 TMGCSKNLVDSELLMKQFEANGYDCVHDSEKPEGEIAVINTCGFIDTAKEESINTILEFV 69 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R N + S++ V GC++Q E++ + P V+ G + L L +A Sbjct: 70 NRKENGQLSKL--------FVMGCLSQRYKEDLEKEIPEVDKFYGKFNFKELLTDLGKAE 121 Query: 145 F----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G+R + T + A++ I EGCD+ C +C +P G Sbjct: 122 VTACNGRRSLTTPHHY---------------------AYIKIAEGCDRHCAYCAIPLITG 160 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR + ++ E +L G E ++ Q + + G LDG K ++L+ +++I G+ Sbjct: 161 KHRSRKMEDILKEVAELAAAGTKEFQVIEQELTYY-GVDLDG-KHHITELISRMADIPGV 218 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++P L+ + + YL + +Q SD +L M R T E I Sbjct: 219 EWIRLHYAYPNQFPMDLLDVMREKPQVCKYLDVALQHVSDNMLTRMRRNVTKQETMDFIR 278 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +R P++ I + +VGFPGET+ DF + V + + +F YS GT + E Sbjct: 279 SLREKVPNLHIRTTLLVGFPGETEQDFEELKEFVRWARFERMGAFAYSHEEGTYSALHYE 338 Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL---- 435 V E VK +RL + +E +G++++V+I++ KE +GRS + Sbjct: 339 DDVPEEVKQKRLDEIMAIQQEISAEIEAEKIGKVLKVIIDR--KEGEYYIGRSEFCSPEV 396 Query: 436 --QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + ++ K IG+ +VRITD LYGE++ Sbjct: 397 DPEVLIQAEKTLKIGEFYQVRITDADEFDLYGEVL 431 >gi|332879558|ref|ZP_08447253.1| ribosomal protein S12 methylthiotransferase RimO [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682524|gb|EGJ55426.1| ribosomal protein S12 methylthiotransferase RimO [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 448 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 117/450 (26%), Positives = 209/450 (46%), Gaps = 41/450 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86 V + GC N+ DS ++ + GY+ + D ++ V+NTC A E+ + + Sbjct: 23 VITLGCSKNLVDSEKLMRQLEANGYKVTHDTDRPQGEIAVINTCGFIGDAKEESINMI-- 80 Query: 87 IRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 L+ + KE G L + V GC+++ +E+ P V+ G + L L +A Sbjct: 81 ---LEFCQAKEEGRLKKLFVMGCLSERYLKELGEEIPQVDKFYGKFDWNELLTDLGKA-- 135 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 Y E ER Y A+L I EGCD+ C++C +P G +SR Sbjct: 136 --------YHQELSLERELTTPSHY-------AYLKISEGCDRRCSYCAIPIITGKHVSR 180 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 + ++DE R L+ GV E ++ Q + + GLD + +L+ +++I G+ +R Sbjct: 181 PIEDILDEVRMLVSRGVKEFQVIAQELTYY---GLDLYHRQMLPELIERMADIPGVDWIR 237 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++P + L + + + Y+ + +Q SD +L+ M+R T E +I+R R Sbjct: 238 LHYAYPANFPVDLFRVMREKKNVCKYMDIALQHISDNMLQRMHRHVTRQETYDLIERFRE 297 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--- 381 P + + + +VG PGET++DF +D V K+ + + +F YS GT + E Sbjct: 298 EVPGVHLRTTLMVGHPGETEEDFNELLDFVRKVKFDRMGAFAYSEEEGTYSAEHYEDEIP 357 Query: 382 -VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSV 438 + + ++L+ LQ+K+ +G+I +V+I++ E G+ SP + Sbjct: 358 FETKQARLDKLMALQQKI---SADLAAQKIGKIFKVIIDRSEGEYYIGRTEFDSPEVDPE 414 Query: 439 VL---NSKNHNIGDIIKVRITDVKISTLYG 465 VL + ++G +V+ITD LYG Sbjct: 415 VLIPVSEGTLSLGTFYEVKITDADDFDLYG 444 >gi|315185501|gb|EFU19271.1| RNA modification enzyme, MiaB family [Spirochaeta thermophila DSM 6578] Length = 442 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 122/418 (29%), Positives = 202/418 (48%), Gaps = 34/418 (8%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKV-YSFL 84 F+++ GC N D+ + + G+E V +ADLIV+NTC IR+ E + +FL Sbjct: 4 FYLEPLGCAKNQVDAEVIISLLLDAGWELVEDPAEADLIVVNTCGFIRDAKEESLETAFL 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R R + RI ++ GC+AQ G E+ V+ V+G + + + Sbjct: 64 FRER-FPDKRI--------LLTGCLAQRYGRELGEGMEEVDGVLGNADLSAVVDAARQVM 114 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRG 200 G+RVV T + R RKR ++ A++ + EGCD C++C +P RG Sbjct: 115 EGRRVVWTPQARRPAHVR---------RKRLLSFPGSAYVKVAEGCDNRCSYCAIPLIRG 165 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR ++V E + L+ G+ E+ L+ Q++ ++ GK G + S LL + E++G Sbjct: 166 RFWSRPEEEIVQEVKGLLGEGIREVNLVAQDLGSY-GKERGG---SLSGLLERILELQGD 221 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R HP +++ G L+PY+ LP Q S R+L+ M RR A Y +++ Sbjct: 222 FWVRLLYIHPDHFPWEILRLMGQDRRLLPYVDLPFQHVSARLLRRMGRRGDAERYAELVH 281 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS--NM 378 +R PD+ + S F++GFPGE ++D A ++++ A F YSP GTP + Sbjct: 282 ALRDSLPDVVVRSTFLLGFPGEEEEDLDALARFLEEVRLDWAGFFVYSPEEGTPAEAWHR 341 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFN----DACVGQIIEVLIEKHGKEKGKLVGRS 432 E V+ ER ++ L Q + VG+ EVL+E+ + + + RS Sbjct: 342 EEGRKGRVRLERAERRKEDLERLQEGITGERLERWVGRECEVLVEERIEGEDMALARS 399 >gi|281419891|ref|ZP_06250890.1| RNA modification enzyme, MiaB family [Prevotella copri DSM 18205] gi|281406018|gb|EFB36698.1| RNA modification enzyme, MiaB family [Prevotella copri DSM 18205] Length = 433 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 125/460 (27%), Positives = 213/460 (46%), Gaps = 59/460 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAA-EKVYSFLGRI 87 + GC N+ DS + F + GY V+ ++ V+NTC E A E + + L I Sbjct: 10 TLGCSKNLVDSELLMKQFEANGYHCVHDSKRPQGEIAVINTCGFIEDAKQESIDTILEFI 69 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 + + R+++ + V GC++Q +E+ P V+ G Y +L + L +A Sbjct: 70 QAKEEGRLRK-----LYVMGCLSQRYQKELEEEMPEVDKFYGKFNYKQLLQELGKAEVS- 123 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIE 202 N +R +T A++ I EGC++ C +C +P G Sbjct: 124 ---------------------SCNGQRHLTTPRHYAYIKIAEGCNRHCAYCAIPIITGKH 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR +++ E R+L+ GV E ++ Q + + G +DG K ++L+ +++I G+ Sbjct: 163 VSRPKEEILQEVRELVAEGVKEFQIIAQELTYY-GVDIDG-KHHITELISEMADIPGVKW 220 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R ++P L+ + + YL + +Q SD +L SM+R T E ++ I Sbjct: 221 IRLHYAYPNQFPMDLLDVMREKPNVCKYLDIALQHISDHMLTSMHRHVTKQETINLLKAI 280 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P I I + +VGFPGETD+DF +D V + + + +F YS GT + E Sbjct: 281 RERVPGIHIRTTLMVGFPGETDEDFHELLDFVREQRFERMGAFAYSEEEGTYSATHYE-- 338 Query: 383 DENVKAERLLCLQKKLREQQVSFNDAC-------VGQIIEVLIEKHGKEKGKLVGR---- 431 +NV AE Q++L E + D VG+ + V+I++ KE +GR Sbjct: 339 -DNVPAE---VKQRRLDELMILQQDISSEIEADKVGKNMTVIIDR--KEGDYYIGRTEFC 392 Query: 432 SPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468 SP + VL + K +G +V IT + LYG++V Sbjct: 393 SPEVDPEVLIRADEKRLRVGCFYQVEITASEEFDLYGKVV 432 >gi|319957782|ref|YP_004169045.1| SSU ribosomal protein s12p methylthiotransferase [Nitratifractor salsuginis DSM 16511] gi|319420186|gb|ADV47296.1| SSU ribosomal protein S12P methylthiotransferase [Nitratifractor salsuginis DSM 16511] Length = 439 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 120/446 (26%), Positives = 215/446 (48%), Gaps = 34/446 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ + S GC N+ DS M YE + +AD+I++NTC E A E+ Sbjct: 1 MSKKLHLVSLGCTKNLVDSEVMLGKL--ADYELSDEPAEADVIIVNTCGFIEAAKEES-- 56 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-- 140 + + +L R KE D L+V++GC+++ E++ + P +++ G Y R+ EL+ Sbjct: 57 -IATVLDLHERR-KE--DSLLVMSGCLSERYKEQLQKEMPEIDIFTGVGDYERIDELIRQ 112 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 +++ F +V Y +K RL I Y+ A++ I EGC++ C+FC +P +G Sbjct: 113 KQSTFSPQV----YLATEKSPRL-ITGSNYH------AYIKIAEGCNQNCSFCAIPSFKG 161 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR+L +V E L G + + + Q+ +++ G+ L G + DL+ + +I G+ Sbjct: 162 RLQSRTLDSIVAEVSALTAKGFYDFSFISQDSSSY-GRDL-GMRDGLIDLIRHMEQIPGV 219 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R +P S LI A D V Y +P+Q DR+LK+M R + R++++ Sbjct: 220 RSARILYLYPSTTSFELIDAIADSPVFQTYYDMPIQHIDDRVLKTMKRGFGEAKTRELLE 279 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +RS + + I G PGE+++ FR D ++ G+ + F YS T M E Sbjct: 280 AMRSKEGSF-VRTSVIAGHPGESEESFRKLCDFLESFGFDRINVFAYSNEEETAAYEM-E 337 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS--- 437 Q+ E V R L + + + + + +G+ + I+ +E L+ P L + Sbjct: 338 QLPEEVITRRTEILGEIAQRSRDASLERMIGRRCRLAIDGPSQEHEYLLSARPLLWAPEI 397 Query: 438 ---VVLNSKNH---NIGDIIKVRITD 457 V++N N IG + + +IT+ Sbjct: 398 DGEVLVNDTNDLDVKIGGLYQGKITE 423 >gi|255322313|ref|ZP_05363459.1| conserved hypothetical protein [Campylobacter showae RM3277] gi|255300686|gb|EET79957.1| conserved hypothetical protein [Campylobacter showae RM3277] Length = 429 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 104/385 (27%), Positives = 189/385 (49%), Gaps = 36/385 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + K++GC+ N+YD+ M+ + + Y+ V+ ++AD++V+N+C + A S++ Sbjct: 15 EKVYFKTFGCRTNIYDTELMKS--YVKDYDIVSDENEADIVVVNSCTVTNSADSGARSYI 72 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ K G V++ GC A ++G+E+ +S + V+ G + LL+ Sbjct: 73 NGIK-------KRGAR--VILTGCGAVSKGKELFNKSAVFGVI-GASKKEDINALLK--- 119 Query: 145 FGKRVVDTDYSVEDKFE--RLSIVDGG--YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 S + FE L +D N + AF+ IQEGCD C++C++P RG Sbjct: 120 ----------SQDPFFELGNLKSIDKNIVTNYENHTKAFIKIQEGCDFACSYCIIPAVRG 169 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S ++ EA+ L NG E+ L G N+ ++ G D + LL L +I G+ Sbjct: 170 KARSMDEEAILREAKILAYNGYNELVLTGTNIGSY---GKD-TGSSLGRLLGRLGKIGGI 225 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + + + + L +LH+ +Q S+ +L+ M RR+ A+ ++ Sbjct: 226 KRIRLGSIEPSQIDESFREILRE-SWLERHLHIALQHTSEAMLRIMRRRNQAFRDLELFL 284 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + + A+ +D+IVG PGE+++ + +D K F YSPR GT ++M Sbjct: 285 ELSQM--GFALGTDYIVGHPGESEEIWSEALDNFKKFPLTHLHCFAYSPRSGTHSADMKV 342 Query: 381 QVDENVKAERLLCLQKKLREQQVSF 405 V+ +V RL L++ + E F Sbjct: 343 DVNGDVAKARLKVLKQIVAENNFKF 367 >gi|325108328|ref|YP_004269396.1| RNA modification enzyme, MiaB family [Planctomyces brasiliensis DSM 5305] gi|324968596|gb|ADY59374.1| RNA modification enzyme, MiaB family [Planctomyces brasiliensis DSM 5305] Length = 491 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 120/418 (28%), Positives = 204/418 (48%), Gaps = 49/418 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N Y++ + + GY + ADL V+NTC + K IR L Sbjct: 72 TLGCKVNQYETQLVYEALRKNGYREARDGETADLCVVNTCTVTNTGDSKSRQV---IRQL 128 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +R G LV+ GC A + +++ + VV + LP++LER Sbjct: 129 --ARKNPGTRTLVM--GCYATRDPQQVADLPGVFEVVTDKR---ELPDILER-------- 173 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + + D +S +G RKR A++ +Q+GC CT+C++P R SRS Q+ Sbjct: 174 ---HGIHDMPVGISHFEG---RKR---AYVKVQDGCILKCTYCIIPSVRPGLQSRSPQQI 224 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-----RGKGLDGEKCTFS--DLLYSLSEIKGLVRL 263 +E R+L+DNG EI + G +V + RGK K F L L +I G R+ Sbjct: 225 EEEVRRLVDNGYREIVITGVHVGHYGVDTTRGKS---GKPPFRLWHLFQKLDKIPGDWRM 281 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ +++D I A D + L P H +QSGS+ +L+ M RR++ + + ++ +R Sbjct: 282 RLSSIEAVEINDDFISAAADCEHLCPQFHPALQSGSETVLRRMRRRYSMARFLEKLENMR 341 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 D A ++D IVGFPGET+++F T+ + + F YS R GT ++ +Q Sbjct: 342 ERLDDPAFTTDVIVGFPGETEEEFEETLQACRDARFMKTHVFPYSTRKGTKAADFADQCP 401 Query: 384 ENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 V + +RL L++ L E+ + ++ +G +VL+E+ ++ GR W++ Sbjct: 402 PQVIKNRVQRLSDLERDLAER---YYESRLGLPAKVLVER------EISGRPGWVRGT 450 >gi|254465076|ref|ZP_05078487.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacterales bacterium Y4I] gi|206685984|gb|EDZ46466.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Rhodobacterales bacterium Y4I] Length = 471 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 126/460 (27%), Positives = 208/460 (45%), Gaps = 49/460 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 37 SLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 93 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ AE + I P ++ V GP Y ++V+ Sbjct: 94 ----LKENGK--VIVTGCLG-AEPDYIREHHPRIHAVTGPHQY-------------EQVL 133 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D +S + + L G R + +L I EGC+ C FC++P RG SR Sbjct: 134 DAVHSAVPPSPNPYVDLLPATGVRLTPRHFS-YLKISEGCNHKCKFCIIPDMRGKLASRP 192 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLS 255 + V+ EA KL++ GV E+ ++ Q+ +A W+G+ + S L L+ Sbjct: 193 VHAVLREAEKLVEAGVRELLVISQDTSAYGLDRKYSAHPWKGEDVRSHILDLSRELGKLA 252 Query: 256 EIKGL-VRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAY 313 + L VRL Y +P LI D + L+PYL +P Q +L+ M R A Sbjct: 253 PAEDLWVRLHYVYPYPHVRE--LIPLMADPENALLPYLDIPFQHAHPDVLRRMARPAAAA 310 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + I+ R+ PDI + S FIVGFPGET+ +F+ +D +D+ + FKY G Sbjct: 311 KTLDEINAWRATCPDITLRSTFIVGFPGETEAEFQHLLDWMDEAQLDRVGCFKYENVDGA 370 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVG 430 +++ + V E VK ER +K + + A VGQ ++V+ I++ G + Sbjct: 371 RSNDLPDHVPEEVKQERWERFMEKAQAISEAKLAAKVGQTMQVIVDDIDEDGIATCRTKA 430 Query: 431 RSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGEL 467 +P + + ++ GD++ V + + L+G+L Sbjct: 431 DAPEIDGNLFIDEGTEGLQAGDLVTVEVDEAGEYDLWGKL 470 >gi|116334998|ref|YP_802493.1| hypothetical protein CRP_096 [Candidatus Carsonella ruddii PV] gi|116235279|dbj|BAF35127.1| conserved hypothetical protein [Candidatus Carsonella ruddii PV] Length = 426 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 101/387 (26%), Positives = 191/387 (49%), Gaps = 32/387 (8%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD---ADLIVLNTCHIREKAAEKVYSFL 84 ++K+ GC +N Y S + ++ Y ++ + + ++L++LN+C +R+ K+ Sbjct: 8 YIKTLGCNINTYIS---SKIIYNIKYFKIKILKNFLKSNLLILNSCVVRKNPQIKI---- 60 Query: 85 GRIRNLKNSRIKEGGDLLVV-VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 ++ LK + +++ + GC+ + E L S +++V+ +Y + ++L Sbjct: 61 --LKELKKWFFIKKYKKIIIILTGCLTEFEKINSLI-SLKIDIVINSLSYIFIKKILNL- 116 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 Y K L +N K+ + +++I +GC+ CT+C++P T+G E Sbjct: 117 ----------YLKTKKKILLIKKKNNFNIKKNILNYISIMKGCNHSCTYCIIPQTKGKEF 166 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S S + + I EITLLGQNVN++ K ++ F+ L++++S+IK + R+ Sbjct: 167 YYSFSYIFNYIINNIKKKTTEITLLGQNVNSYYNKNVN-----FNSLIFNISKIKNIKRI 221 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 + +S+ D + + ++ + ++HLP+QSGS+ ILK MNR++ Y I +I+ Sbjct: 222 NFLSSNIIDFNKNFYNLYKNVKKISNHIHLPIQSGSNLILKKMNRKYNLNHYICFIKKIQ 281 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 ++ S+D IV FP E DF T+ ++ KI + + F YS T N E Sbjct: 282 KIKFT-TFSTDIIVSFPNENFFDFDQTLKVLKKIKFLDIYYFLYSKLRNTISFNFKEN-S 339 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACV 410 VK +L QK + + N+ V Sbjct: 340 FFVKKFKLFIFQKSIIKNYYLLNNRVV 366 >gi|260427804|ref|ZP_05781783.1| conserved hypothetical protein [Citreicella sp. SE45] gi|260422296|gb|EEX15547.1| conserved hypothetical protein [Citreicella sp. SE45] Length = 454 Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 124/448 (27%), Positives = 198/448 (44%), Gaps = 37/448 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G + Sbjct: 34 SLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLEAIGEALS- 92 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ AE E I P V V GP Y ++V+ Sbjct: 93 ENGR--------VIVTGCLG-AEPEYITGVHPRVLAVTGPHQY-------------EQVL 130 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D + D F L + GG ++L I EGC+ C FC++P RG SR Sbjct: 131 DAVHGAVPPSPDPFVDL-LPAGGVKLTPRHYSYLKISEGCNHACKFCIIPDMRGKLASRP 189 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRY 265 V+ EA KL++ GV E+ ++ Q+ +A+ D EK L L E+ VR+ Y Sbjct: 190 HRAVLREAEKLVEAGVKELLVISQDTSAYGTDWKDRTEKAPILSLARDLGELGAWVRMHY 249 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + A G + +PYL +P Q LK M R A I R+ Sbjct: 250 VYPYPHVRELIPLMAEGKV---LPYLDIPFQHAHPDTLKRMARPAAAARTLDEIAAWRAA 306 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+I + S FIVG+PGET+++F+ +D +D+ + F+Y G + + + V Sbjct: 307 CPEIVLRSTFIVGYPGETEEEFQTLLDWMDEARLDRVGCFQYENVDGARSNALPDHVPAE 366 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVVLNSK 443 +K ER +K ++ + A VGQ IEV+++ + + +P + + + Sbjct: 367 LKQERWDRFMEKAQQISEANLAAKVGQRIEVIVDLVEDDAATCRTKADAPEIDGNLFIDE 426 Query: 444 NH---NIGDIIKVRITDVKISTLYGELV 468 H GDI+ V + + L+G LV Sbjct: 427 GHEKLTPGDIVTVEVDEAGEYDLWGRLV 454 >gi|42527391|ref|NP_972489.1| MiaB-like tRNA modifying enzyme [Treponema denticola ATCC 35405] gi|41817976|gb|AAS12400.1| MiaB-like tRNA modifying enzyme [Treponema denticola ATCC 35405] Length = 468 Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 115/452 (25%), Positives = 205/452 (45%), Gaps = 46/452 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGY-----ERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 +++ GC++N +S + F G+ E S+ L ++NTC + KA +K Sbjct: 9 IETLGCRLNQVESEALAVRFAECGFDVFSKEAETSILPVKLCIVNTCTVTGKAEQKA--- 65 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT--YYRLPELLE 141 R L +KE + +++V GC A+ E + I + + + G + LP+ L+ Sbjct: 66 ----RRLIRLLLKEHEESVILVTGCYAELEADSIEKINKRIIAFSGKKKDELDGLPQFLK 121 Query: 142 RARFGKRVVDTD---------------YSVEDKFERLSIVDGGYNRKRGVT--------- 177 + + + D Y+ ED+ ++ ++ RK Sbjct: 122 DSCLKNKDLKEDTVNLKKNLLIFRNEIYAKEDQQDKSFLLKETERRKSMFKLSSPVFVFH 181 Query: 178 --AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 A L IQ+GC+ C +C + RG +S + V ++ NG E+ L G N++ + Sbjct: 182 SRASLKIQDGCNNACAYCRIRLARGTSVSLPAEEAVRRIVQIEKNGAAEVVLSGVNLSQY 241 Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295 R + G F++LL L E +RLR ++ +P + D +++ + + P+ HL + Sbjct: 242 RDETYGG----FANLLAKLLENTKKIRLRISSMYPECVDDGILEIVANKRIC-PHFHLSI 296 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355 QSGSD+ILK+MNR + + R I+ +R + + I D I GFP ET++DF T + + Sbjct: 297 QSGSDKILKAMNRPYREADIRMAINNLRKAKDNPFIGCDIITGFPSETEEDFLQTFKMCE 356 Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415 + F +S R GT +M +V E R L + + S+ +C G++ Sbjct: 357 DLKIPGIHVFPFSARPGTKAFSMRPKVPEREAGRRASLLSELSGKNYQSYLASCNGKLFF 416 Query: 416 VLIEK-HGKEKGKLVGRSPWLQSVVLNSKNHN 446 +IEK E ++V + +V+N K N Sbjct: 417 GVIEKPQNNEDLRIVTENYLSLPLVVNKKAEN 448 >gi|320108291|ref|YP_004183881.1| MiaB-like tRNA modifying enzyme YliG [Terriglobus saanensis SP1PR4] gi|319926812|gb|ADV83887.1| MiaB-like tRNA modifying enzyme YliG [Terriglobus saanensis SP1PR4] Length = 560 Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 123/475 (25%), Positives = 212/475 (44%), Gaps = 77/475 (16%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M M G E + DAD+IV+NTC + A ++ + I + Sbjct: 64 SLGCPKNLVDSEVMMGMLHHAGAELTPAASDADVIVINTCSFIDSAKQES---VNTILEM 120 Query: 91 KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVG-------------------- 129 ++ GG ++VAGC+ + +EI++ P V+ VVG Sbjct: 121 VQHKVANGGRAQKIIVAGCLVERYRDEIMKNIPEVDAVVGTGELDGILAAAGIHQPKNDS 180 Query: 130 PQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRG-------------- 175 P L++RA +S + E+ S +G ++G Sbjct: 181 PFNILSESSLIDRAPSAVH----KHSQTEVNEQASRAEGNLREQQGRFSRMDWDGATAAL 236 Query: 176 -----------------VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218 +A++ I EGCD C FC++P RG SR + V+ EA L+ Sbjct: 237 PSYLYDDETPRILTTPRASAYIKIAEGCDHPCGFCIIPQLRGKFRSRRIGSVLAEAASLL 296 Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK----GLVR-LRYTTSHPRDM 273 GV EITL+GQ+ + G+ L G K + LL +L+ + G ++ LR+ ++P + Sbjct: 297 KQGVREITLIGQDTTCY-GEDL-GMKDGLATLLEALATMNVEGIGPIKWLRFLYAYPNKV 354 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 + L++ D + YL +P+Q + LK M R + + ++I++ R++ P I I + Sbjct: 355 TTKLLETIAAHDNISKYLDVPLQHAAAGTLKRMKRGGSGAIFLKMIEKARNIVPGIVIRT 414 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE---NVKAER 390 FIVGFPGET +F + + F YS G ++ E+V + + R Sbjct: 415 SFIVGFPGETAAEFEELESFIQQARIDWLGVFTYSDEEGAAAFDLGEKVPKRTIEARRRR 474 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVVL 440 ++ Q+K+ + + +G+ +EVL+E +E +G+ + +P + VL Sbjct: 475 IMRTQQKISAKA---REQWIGKQMEVLVEGVSEETDLLWEGRTMLHAPEIDGKVL 526 >gi|57168992|ref|ZP_00368121.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter coli RM2228] gi|57019658|gb|EAL56347.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter coli RM2228] Length = 439 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 106/380 (27%), Positives = 185/380 (48%), Gaps = 31/380 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ S GC N+ DS M YE + AD++++NTC + A ++ + Sbjct: 3 KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y R+ E++ + Sbjct: 58 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRG 200 + F + + G N KR +T AF+ I EGC++ C+FC +P +G Sbjct: 114 ------------NLFSNSTYLQGE-NSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG 160 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR +S ++ E + L+ G + + + Q+ +++ GEK L+ + +I+G+ Sbjct: 161 KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIEGI 218 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R +P S+ LIK + + Y +P+Q SD +LK M R + +++++ Sbjct: 219 KAARILYLYPTSASEALIKRIIASKIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLN 278 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++S PD + + FIVG PGE+D DF + + G+ + F YS T +M E Sbjct: 279 LMKSA-PDSFLRTGFIVGHPGESDADFGELCEFIKDFGFDRVSVFAYSKEEDTAAFDM-E 336 Query: 381 QVDENVKAERLLCLQKKLRE 400 QV V +RL ++K + E Sbjct: 337 QVPFKVINKRLKIIEKIVDE 356 >gi|32266810|ref|NP_860842.1| hypothetical protein HH1311 [Helicobacter hepaticus ATCC 51449] gi|81665617|sp|Q7VGL0|RIMO_HELHP RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|32262862|gb|AAP77908.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 448 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 96/395 (24%), Positives = 194/395 (49%), Gaps = 20/395 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q + S GC N+ DS M Q Y +++AD+I++NTC E A ++ + Sbjct: 7 QSLHLISLGCTKNLVDSEVMLGRL--QSYTLTQELENADVIIINTCGFIESAKQES---I 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I + ++R K G L+VV+GC+A+ +E+ P ++++ G Y ++ ++ + R Sbjct: 62 QTIFHASSNR-KRGA--LLVVSGCLAERYTKELKEEIPEIDIITGVSDYDKIDSMIAQRR 118 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + + D+ I+ ++ A++ + EGC++ C+FC +P +G S Sbjct: 119 ---SIESAKVFLADEHNERVIIGSSFH------AYIKLSEGCNQACSFCAIPQFKGKLHS 169 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+L + E L + G + + + Q+ +++ + L G+K L+ ++ + + R Sbjct: 170 RTLQSTLKELTNLYNQGFRDFSFIAQDSSSYM-RDL-GQKDGLMQLIRAVDNLNLPISAR 227 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P S LI++ +PY +P+Q +D +LK+M R + ++++ +R+ Sbjct: 228 ILYLYPSSTSLQLIESIAQSKSFLPYFDMPIQHIADAMLKTMRRGADKATHLELLNAMRA 287 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 V P + + FI+G P E + F D ++ + + F YSP+ GT +M + + Sbjct: 288 V-PHNFVRTSFIIGHPNEDEKAFLELHDFIESFAFDRINLFAYSPQEGTAADSMPNRPNT 346 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 + +R+ L K ++ Q + N A VGQ ++ ++E Sbjct: 347 KITNQRINTLNKIIQSQYKAHNLALVGQEVDAILE 381 >gi|148925626|ref|ZP_01809314.1| hypothetical protein Cj8486_1492c [Campylobacter jejuni subsp. jejuni CG8486] gi|145845636|gb|EDK22727.1| hypothetical protein Cj8486_1492c [Campylobacter jejuni subsp. jejuni CG8486] Length = 439 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 105/375 (28%), Positives = 186/375 (49%), Gaps = 21/375 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ S GC N+ DS M YE + AD+I++NTC + A ++ + Sbjct: 3 KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVIIVNTCGFIDSAKKES---IN 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y R+ E++ + Sbjct: 58 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ Y + +R I+ G + AF+ I EGC++ C+FC +P +G SR Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +S ++ E + L+ G + + + Q+ +++ GEK L+ + +IKG+ R Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P S+ LIK ++ + Y +P+Q SD +LK M R + +++++ ++S Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ + + FIVG PGE++ DF + V G+ + F YS T +M EQV Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVPFK 341 Query: 386 VKAERLLCLQKKLRE 400 V +RL ++K + E Sbjct: 342 VINKRLKIIEKIVDE 356 >gi|89900760|ref|YP_523231.1| ribosomal protein S12 methylthiotransferase [Rhodoferax ferrireducens T118] gi|122996924|sp|Q21X03|RIMO_RHOFD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|89345497|gb|ABD69700.1| conserved hypothetical protein [Rhodoferax ferrireducens T118] Length = 464 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 114/398 (28%), Positives = 180/398 (45%), Gaps = 43/398 (10%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 M I P+ FV S GC + DS + ++GY+ + ADL+++NTC Sbjct: 1 MSEVITKSNTAPKVGFV-SLGCAKALTDSELILTQLSAEGYQTSKTFQGADLVIVNTCGF 59 Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV----AQAEGEEILRRSPIVNVVV 128 + A ++ +G + E G V+V GC+ A+ G + + P V V Sbjct: 60 IDDAVKESLDTIGEA-------LAENGK--VIVTGCLGAKTAEGGGNLVRQMHPSVLAVT 110 Query: 129 GPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL---SIVDGGYNRKRGVTAFLTIQEG 185 GPQ + + + A K D F L + G A++ I EG Sbjct: 111 GPQATQEVMDAV-HANLPKP--------HDPFIDLVPNAFGVAGIKLTPRHYAYIKISEG 161 Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA----------- 234 C+ CTFC++P RG +SR + V+ EAR L + GV E+ ++ Q+ +A Sbjct: 162 CNHRCTFCIIPSMRGDLVSRPIGDVLKEARALFEGGVKELLVISQDTSAYGVDVKYRTGF 221 Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCL-IKAHGDLDVLMPYLH 292 W GK + L ++E G VRL Y +P + D L + A G + +PYL Sbjct: 222 WDGKPTKTRLLELAAALGDMAEPYGAWVRLHYVYPYP-SVDDLLPLMAAGKV---LPYLD 277 Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 +P+Q +LK M R + + + I R R V PDI + S FI GFPGET+++F +D Sbjct: 278 VPLQHSHPEVLKRMKRPASGEKNLERIQRWREVCPDIVVRSTFIAGFPGETEEEFSHLLD 337 Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 + + +A F YSP G +++ + ++ ER Sbjct: 338 FMREAQIDRAGCFAYSPVQGAVANDIGGMLPIELREER 375 >gi|29346323|ref|NP_809826.1| putative Fe-S oxidoreductase [Bacteroides thetaiotaomicron VPI-5482] gi|81445146|sp|Q8A9A2|RIMO_BACTN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|29338218|gb|AAO76020.1| putative Fe-S oxidoreductase [Bacteroides thetaiotaomicron VPI-5482] Length = 436 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 123/456 (26%), Positives = 216/456 (47%), Gaps = 39/456 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82 +R + + GC N+ DS ++ GY + + + ++ V+NTC A E+ + Sbjct: 4 KRIDIITLGCSKNLVDSEQLMRQLEEAGYSVTHDTENPEGEIAVINTCGFIGDAKEESIN 63 Query: 83 FLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L+ + KE GDL + V GC+++ +E+ P V+ G + ELL+ Sbjct: 64 MI-----LEFAERKEEGDLKKLFVMGCLSERYLQELAIEIPQVDKFYGK---FNWKELLQ 115 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 GK Y E ER Y A+L I EGCD+ C++C +P G Sbjct: 116 D--LGKT-----YHEELYIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGR 161 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 IS+S+ +++DE R L+ GV E ++ Q + + G+D +K +L+ +SEI G+ Sbjct: 162 HISKSMEEILDEVRYLVSQGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISEIPGV 218 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++P L + + D + Y+ + +Q SD +LK M R+ + + ++I+ Sbjct: 219 EWIRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYKLIE 278 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + R P I + + +VG PGET++DF + V K + + +F YS GT + E Sbjct: 279 QFRKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKARFDRMGAFAYSEEEGTYAAQQYE 338 Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435 + + VK RL L + + A +GQ ++V+I++ E +GR SP + Sbjct: 339 DSIPQEVKQARLDELMDIQQGISAELSAAKIGQQMKVIIDR--IEGDYYIGRTEFDSPEV 396 Query: 436 QSVVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468 VL S + +G +V +TD LY +++ Sbjct: 397 DPEVLISVSREELEVGQFYQVEVTDADDFDLYAKIL 432 >gi|328950305|ref|YP_004367640.1| MiaB-like tRNA modifying enzyme [Marinithermus hydrothermalis DSM 14884] gi|328450629|gb|AEB11530.1| MiaB-like tRNA modifying enzyme [Marinithermus hydrothermalis DSM 14884] Length = 436 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 127/448 (28%), Positives = 212/448 (47%), Gaps = 38/448 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R V++ GC++N +S + M + V + ADL V+NTC + A + Sbjct: 2 RVAVRTLGCKVNQVESDALVGMLKALEPVVVEPEEGADLFVINTCAVTTTAEATARKEIR 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R R + + +VV GC A+ EGE + + +VVV LP+++ F Sbjct: 62 RAR-------RANPEAFIVVTGCYAELEGEAL--KDLGADVVVPNARKAELPKVILE-HF 111 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G + D E + G R V AFL +Q+GC+ C +C++P RG E R Sbjct: 112 G---LPADPVTTPPHEFWGAGERGLLNDR-VRAFLKVQDGCNAGCAYCIIPRLRGRERHR 167 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLVRL 263 + + + EA L+ GV EI L G + ++ G +GL G L+ L + VRL Sbjct: 168 AHTDALAEAEALLRTGVQEIVLTGVRLGSYAGHPRGLAG-------LVEDLVALGAKVRL 220 Query: 264 RYTTSHPRDMSDCLIKAHG-DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 ++ P D L++ + P+LHL +Q+G+DR+LK M RR+ YR ++ R Sbjct: 221 --SSIEPEDTDTALLEVIARHAPQVRPHLHLSLQTGNDRLLKLMGRRYDKAYYRDLVRRA 278 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + P A+++D I G P ET+ + + T+ ++++ + +F Y+PR T + L QV Sbjct: 279 YDLIPGFALTTDVIAGLPTETEAEHQETLAFLEELQPVRVHAFTYTPRPKTRAAR-LPQV 337 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQSV 438 V+ R L+ L +L ++ +G +EVL+E+ G E +G +P V Sbjct: 338 PVEVRKRRTRELIALAHELAAARIRPK---LGTRVEVLVERIRGDEA---LGHTPDYYEV 391 Query: 439 VLNSKNH-NIGDIIKVRITDVKISTLYG 465 V + GD + +R+ ++ TL G Sbjct: 392 VARGRGEARPGDTVWMRVDGIREYTLLG 419 >gi|121613708|ref|YP_001001103.1| putative tRNA modifying protein [Campylobacter jejuni subsp. jejuni 81-176] gi|238065318|sp|A1W162|RIMO_CAMJJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|87249647|gb|EAQ72606.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter jejuni subsp. jejuni 81-176] Length = 439 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 105/375 (28%), Positives = 186/375 (49%), Gaps = 21/375 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ S GC N+ DS M YE + AD+I++NTC + A ++ + Sbjct: 3 KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVIIVNTCGFIDSAKKES---IN 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y R+ E++ + Sbjct: 58 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ Y + +R I+ G + AF+ I EGC++ C+FC +P +G SR Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +S ++ E + L+ G + + + Q+ +++ GEK L+ + +IKG+ R Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P S+ LIK ++ + Y +P+Q SD +LK M R + +++++ ++S Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ + + FIVG PGE++ DF + V G+ + F YS T +M EQV Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTTAFDM-EQVPFK 341 Query: 386 VKAERLLCLQKKLRE 400 V +RL ++K + E Sbjct: 342 VINKRLKIIEKIVDE 356 >gi|332297178|ref|YP_004439100.1| Ribosomal protein S12 methylthiotransferase rimO [Treponema brennaborense DSM 12168] gi|332180281|gb|AEE15969.1| Ribosomal protein S12 methylthiotransferase rimO [Treponema brennaborense DSM 12168] Length = 508 Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 117/444 (26%), Positives = 200/444 (45%), Gaps = 53/444 (11%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFL 84 +FF+ +GC N D + ++G + +AD+I++N+C E A E + + L Sbjct: 3 KFFLDQHGCAKNQVDGELIITRLQNKGLCKTEIAAEADIIIINSCGFIESAKTESLNALL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++I ++AGC+A+ E+ P + + G + L+E Sbjct: 63 EAKEAYPDAKI--------LLAGCLAERYAEQFAEALPEADGIFGNGDLTAIDSLVEPLL 114 Query: 145 FGKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G V + E LS +AF+ I EGCD C+FC +P RG Sbjct: 115 SGGHPVVKPAQQGVCCGSRSELLSFPG---------SAFVKITEGCDNRCSFCAIPLIRG 165 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW--------------RGKGLDGEKCT 246 SR +V E +L NG+ EI L+GQ+ A+ R G G + Sbjct: 166 NLRSRDADDIVREIDELTRNGIFEINLIGQDSAAYGMDGENPHDPAVWARFDGASGTQSP 225 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 + LL +S + G LR HP ++ + L+ Y +P QSG+D I+K+M Sbjct: 226 LARLLEKISALNGSFWLRLLYIHPDHFPPDILPVIARDERLLAYFDIPFQSGADSIIKAM 285 Query: 307 NRRHTAYEYRQIIDRIRSV-----RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361 NR + Y ++ IR +++ + F+ GFPGET+DD + T ++ I Sbjct: 286 NRTGSRVRYEDMVKNIRGTLDAVKDGGVSLRTTFLTGFPGETEDDAQETERFLENISPDW 345 Query: 362 AFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 + F YS GTP +++ +QV + +AE L C Q+++ +++ + + + +VLI Sbjct: 346 SGCFPYSKEDGTPAASLKKQVSRKIAEKRAEALRCAQERITAERLKRH---LNRTYDVLI 402 Query: 419 EK-----HGKEKGKLVGRSPWLQS 437 E+ G+ G +GR+ W Q+ Sbjct: 403 EEIIEGGDGEGTGLAIGRA-WFQA 425 >gi|86152551|ref|ZP_01070756.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843436|gb|EAQ60646.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter jejuni subsp. jejuni HB93-13] Length = 439 Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 106/380 (27%), Positives = 186/380 (48%), Gaps = 31/380 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ S GC N+ DS M YE + AD++++NTC + A ++ + Sbjct: 3 KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y R+ E++ + Sbjct: 58 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRG 200 + F + + G N KR +T AF+ I EGC++ C+FC +P +G Sbjct: 114 ------------NLFSNSTYLQGE-NSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG 160 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR +S ++ E + L+ G + + + Q+ +++ GEK L+ + +IKG+ Sbjct: 161 KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGI 218 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R +P S+ LIK ++ + Y +P+Q SD +LK M R + +++++ Sbjct: 219 RAARILYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLN 278 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++SV P+ + + FI+G PGE++ DF V G+ + F YS T +M E Sbjct: 279 LMKSV-PNSFLRTGFIIGHPGESEADFEELCAFVKDFGFDRISVFAYSKEEDTAAFDM-E 336 Query: 381 QVDENVKAERLLCLQKKLRE 400 QV V +RL ++K + E Sbjct: 337 QVSFKVINKRLKIIEKIVDE 356 >gi|145344300|ref|XP_001416674.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576900|gb|ABO94967.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 516 Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 103/371 (27%), Positives = 176/371 (47%), Gaps = 33/371 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + FV ++GC N DS M GYE V++ + AD ++NTC ++ + + + + Sbjct: 39 KIFVHTFGCSHNHSDSEFMAGQLRRYGYELVDAPEKADGWLVNTCTVKNPSQSAMNTVIE 98 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R + + +V+AGCV Q + G + LR ++ V R+ E +ER Sbjct: 99 RGKAANKA---------MVIAGCVPQGDKGAKELRDVSLLGVT----QIDRVVEAMERTL 145 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G DT +E K L +D R+ L + GC CT+C + RG S Sbjct: 146 AG----DTVRMLEKK--ALPSLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGS 199 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 +S +V + + GV E+ L ++ A+ G L + + ++ G V LR Sbjct: 200 YEISALVSRVEQAMAEGVSEVWLSSEDTGAY-GIDLGTDVAALFRAITAVLPTDGSVMLR 258 Query: 265 YTTSHPRDMSDCLIKAHGDL-------DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 ++P I AH D + ++H+PVQSGS+ +L+ M R +T E+++ Sbjct: 259 LGMTNPP-----YILAHLDAVAEAMRHPSVYAWMHIPVQSGSNAVLEGMKREYTVEEFKR 313 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + D + + P + I++D I GFPGETD+ ++ TM L+++ + + ++ PR GTP + Sbjct: 314 VCDTLLAAVPGMVIATDIICGFPGETDEQWQETMSLIEEYKFPEVHISQFYPRPGTPAAK 373 Query: 378 MLEQVDENVKA 388 M + VKA Sbjct: 374 MKRVPTQIVKA 384 >gi|126728064|ref|ZP_01743880.1| MiaB-like Radical SAM protein [Sagittula stellata E-37] gi|126711029|gb|EBA10079.1| MiaB-like Radical SAM protein [Sagittula stellata E-37] Length = 452 Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 115/387 (29%), Positives = 174/387 (44%), Gaps = 32/387 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY + AD +++NTC + A + +G Sbjct: 31 SLGCPKALVDSERILTRLRAEGYGISSDYSGADAVIVNTCGFLDSAKAESLDAIGEALA- 89 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ AE E I P V V GP Y ++V+ Sbjct: 90 ENGR--------VIVTGCLG-AEPEYITGSHPKVLAVTGPHQY-------------EQVL 127 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D + D F L + G + +L I EGC+ C FC++P RG SR Sbjct: 128 DAVHGAVPPSPDPFIDL-LPSTGVSLTPRHYGYLKISEGCNHKCRFCIIPDMRGRLQSRP 186 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLRY 265 V+ EA KL++ GV E+ ++ Q+ +A+ D + K F DL L ++ VRL Y Sbjct: 187 ARAVLREAEKLVEAGVKELLVISQDTSAYGTDWKDRDAKFPFVDLARDLGDLGAWVRLHY 246 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + A G + +PYL +P Q L+ M R A I R+ Sbjct: 247 VYPYPHVRQVIPLMAEGKV---LPYLDIPFQHSHTDTLRRMARPAAAERTLDEIAAWRAD 303 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PDIA+ S FIVG+PGET+ +F+ +D +D+ + F+Y G + + + V E Sbjct: 304 CPDIALRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFQYENVDGARSNALPDHVPEE 363 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQ 412 VKAER +K + + A VGQ Sbjct: 364 VKAERWARFMEKAQAISEAKLAAKVGQ 390 >gi|282862264|ref|ZP_06271326.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces sp. ACTE] gi|282562603|gb|EFB68143.1| MiaB-like tRNA modifying enzyme YliG [Streptomyces sp. ACTE] Length = 492 Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 129/454 (28%), Positives = 199/454 (43%), Gaps = 55/454 (12%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G++ V DAD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLAADGWDLVEDASDADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----------- 129 L +LK+ G VV GC+A+ G+++ P + V+G Sbjct: 61 VDALLEANDLKD----HGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRL 116 Query: 130 -------------PQTYYRLPELLERARFGKRVVDTDYSVE------DKFERLSIVDGG- 169 P+ +L + R V ++ E D E ++ V G Sbjct: 117 QTILNGGIHASHTPRDRRKLLPISPAERQDTAVALPGHAQEIAPAPADLPEGVAPVSGPR 176 Query: 170 --YNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225 R+ G + A + + GCD+ C+FC +P RG ISR S V+ E R L + GV E+ Sbjct: 177 APLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEV 236 Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285 L+ +N N GK L G+ LL L+++ G+ R+R + P +M LI Sbjct: 237 MLVSEN-NTSYGKDL-GDIRLLETLLPELADVDGIERIRVSYLQPAEMRPGLIDVLTSTP 294 Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345 + PY L Q + +L++M R + +++D IR P S+FIVGFPGET+ Sbjct: 295 KVAPYFDLSFQHSAPGVLRAMRRFGDTDRFLELLDTIRGKAPQAGARSNFIVGFPGETEA 354 Query: 346 DFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400 D T +D IG F YS GT ++D +V AERL + + E Sbjct: 355 DLAELERFLTGARLDAIGV-----FGYSDEEGTEAVGYENKLDADVIAERLAHISQLAEE 409 Query: 401 QQVSFNDACVGQIIEVLIEK-HGKEKGKL-VGRS 432 + VG+ ++VL+E E G + VGR+ Sbjct: 410 LTSQRAEERVGETLQVLVESVESDEDGPVAVGRA 443 >gi|298385677|ref|ZP_06995235.1| 2-methylthioadenine synthetase [Bacteroides sp. 1_1_14] gi|298261818|gb|EFI04684.1| 2-methylthioadenine synthetase [Bacteroides sp. 1_1_14] Length = 436 Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 123/456 (26%), Positives = 215/456 (47%), Gaps = 39/456 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82 +R + + GC N+ DS ++ GY + + + ++ V+NTC A E+ + Sbjct: 4 KRIDIITLGCSKNLVDSEQLMRQLEEAGYSVTHDTENPEGEIAVINTCGFIGDAKEESIN 63 Query: 83 FLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L+ + KE GDL + V GC+++ +E+ P V+ G + ELL+ Sbjct: 64 MI-----LEFAERKEEGDLKKLFVMGCLSERYLQELAIEIPQVDKFYGK---FNWKELLQ 115 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 GK Y E ER Y A+L I EGCD+ C++C +P G Sbjct: 116 D--LGKT-----YHEELYIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGR 161 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 IS+ + ++VDE R L+ GV E ++ Q + + G+D +K +L+ +SEI G+ Sbjct: 162 HISKPMEEIVDEVRYLVSQGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISEIPGV 218 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++P L + + D + Y+ + +Q SD +LK M R+ + + ++I+ Sbjct: 219 EWIRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYKLIE 278 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + R P I + + +VG PGET++DF + V K + + +F YS GT + E Sbjct: 279 QFRKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKARFDRMGAFAYSEEEGTYAAQQYE 338 Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435 + + +K RL L + + A +GQ ++V+I++ E +GR SP + Sbjct: 339 DSIPQEIKQARLDELMDIQQGISAELSAAKIGQQMKVIIDR--IEGDYYIGRTEFDSPEV 396 Query: 436 QSVVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468 VL S + IG +V +TD LY +++ Sbjct: 397 DPEVLISVSGEELEIGQFYQVEVTDADDFDLYAKIL 432 >gi|311898714|dbj|BAJ31122.1| hypothetical protein KSE_53470 [Kitasatospora setae KM-6054] Length = 490 Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 125/473 (26%), Positives = 207/473 (43%), Gaps = 41/473 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N DS + + G+ V+ +AD+ V+NTC E A + L +L Sbjct: 11 TLGCARNEVDSEELAGRLEADGWRLVDDASEADVAVVNTCGFVEAAKKDSVDALLEANDL 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY----RLPELL------ 140 K G VV GC+A+ G+E+ P + V+G Y RL +L Sbjct: 71 KG----HGRTQAVVAVGCMAERYGKELADALPEADGVLGFDDYADISSRLNTILSGGHVE 126 Query: 141 ----------------ERARFGKRVVDTDYSV-EDKFERLSIVDGGYN-RKR---GVTAF 179 ER V + ED + ++ G RKR A Sbjct: 127 AHTPRDRRKLLPLTPVERQAAAAEVALPGHGAPEDLPDGVAPASGPRTLRKRLDDAPVAS 186 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 + + GCD+ C+FC +P RG ISR S V++EA L GV E+ L+ +N N GK Sbjct: 187 IKLASGCDRRCSFCAIPAFRGSFISRRPSDVLNEAVWLAGQGVREVVLVSEN-NTSYGKD 245 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL ++ + G+ R+R + P +M LI D ++PY L Q + Sbjct: 246 L-GDIRLLETLLSEIAAVDGIERVRVSYLQPAEMRPGLIDVMTGTDKVVPYFDLSFQHSA 304 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+ M R + ++ +++ IR+ P+ S+FIVGFPGE+++D+ V G Sbjct: 305 PAVLRRMRRFGSTEQFLGLLESIRAKAPEAGARSNFIVGFPGESEEDYAELERFVIHAGL 364 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 F YS GT + ++D++V +R+ L K E + +G + VL+E Sbjct: 365 DAIGVFGYSDEDGTEAAGYDGKLDQDVVDDRVARLSKLAEELTAQRAEQRIGSKVTVLVE 424 Query: 420 --KHGKEKGKLVGRSPWLQ--SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + G +G+ ++P + +L + + +G + +T + L E + Sbjct: 425 SVEDGVVEGRSAHQAPETDGLTTLLGAPDAVVGRFYRAVVTGTEGVDLVAEAI 477 >gi|237709946|ref|ZP_04540427.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237725388|ref|ZP_04555869.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265753598|ref|ZP_06088953.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 3_1_33FAA] gi|229436075|gb|EEO46152.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229456039|gb|EEO61760.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263235312|gb|EEZ20836.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 3_1_33FAA] Length = 432 Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 119/448 (26%), Positives = 208/448 (46%), Gaps = 39/448 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 GC N+ DS ++ + GY+ + D ++ V+NTC A E+ + + L Sbjct: 12 GCSKNLVDSEKLMRQLEANGYKVTHDSDKPQGEIAVINTCGFIGDAKEESINMI-----L 66 Query: 91 KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + + KE G L + V GC+++ +E+ P V+ G + ELL A GK Sbjct: 67 EFCQAKEEGKLKKLYVMGCLSERYLKELALEIPQVDKFYGK---FNWNELL--ADLGKA- 120 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 Y E ER Y A+L I EGCD+ C++C +P G ISR + + Sbjct: 121 ----YKAEFTIERTLTTPHHY-------AYLKISEGCDRKCSYCAIPIITGRHISRPMEE 169 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKGLVRLRYTTS 268 ++DE + L+ GV E ++ Q + + G+D K +L+ ++ + G+ +R + Sbjct: 170 IIDEVKLLVSEGVKEFQIIAQELTYY---GVDLYKSQKLPELIERIANVPGVEWIRLHYA 226 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P + L + + D + Y+ + +Q SD +L M R + E ++I++ R P Sbjct: 227 YPAHFPEELFRVMREHDNVCKYMDIALQHISDNMLNKMRRHVSKAETYELIEKFRREVPG 286 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVK 387 I + + +VG PGE ++DF + V K+ + + +F YS GT + E + VK Sbjct: 287 IHLRTTLMVGHPGEAEEDFEELKEFVKKVRFDRMGAFAYSEEEGTFAAKEYEDSISHEVK 346 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--- 440 +RL L +E + +G+ +V+I++ KE +GR SP + VL Sbjct: 347 QQRLDELMALQQEIAGELSQTKIGKEFKVIIDR--KEGDYYIGRTQFDSPEVDPEVLIKA 404 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG+ KV+IT LY ++ Sbjct: 405 DDEYLKIGEFYKVKITAADDFDLYASIL 432 >gi|327313609|ref|YP_004329046.1| 30S ribosomal protein S12 methylthiotransferase RimO [Prevotella denticola F0289] gi|326945425|gb|AEA21310.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella denticola F0289] Length = 434 Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 125/456 (27%), Positives = 204/456 (44%), Gaps = 51/456 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK----VYSFL 84 + GC N+ DS + F + GY + ++ ++ V+NTC E A E+ + F Sbjct: 10 TMGCSKNLVDSELIMKQFEANGYHCTHDAENPQGEIAVINTCGFIEAAKEESINTILEFA 69 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R +N + +R+ V GC++Q +E+ P V+ G Y +L L +A Sbjct: 70 NRKKNGQLNRL--------YVMGCLSQRYKDELEAELPEVDKFYGKFNYKQLLSDLGKAD 121 Query: 145 F----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G R + T + A++ I EGCD+ C +C +P G Sbjct: 122 IPACNGVRHLTTPHHY---------------------AYVKIAEGCDRHCAYCAIPLITG 160 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR++ V+DE + L+ GV E ++ Q + + G LDG K ++L+ +++I+G+ Sbjct: 161 RHHSRTVEDVLDEVKGLVAQGVKEFQIIEQELTYY-GVDLDG-KHHITELISRMADIEGV 218 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++P L+ + YL + Q SD +L M+R T E +I Sbjct: 219 EWIRLHYAYPNQFPLDLLDVIARKPNVCKYLDIAFQHISDHMLGRMHRHVTKQETLDLIA 278 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR P I + + +VGFPGET+ DF V ++ + + +F YS GT + E Sbjct: 279 EIRRRVPGIHLRTTLLVGFPGETEKDFEELKTFVREVRFERMGAFAYSEEEGTYSATHYE 338 Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435 V E VK +R+ L K + VG++ +V+I++ E +GR SP + Sbjct: 339 DDVPEKVKQQRIDELMKIQQGISEELEGEKVGRVFKVIIDR--TEGEYYIGRTEFCSPEV 396 Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468 VL K G VRITD L+GE+V Sbjct: 397 DPEVLIPIEGKTLQTGRFYDVRITDSDEFDLFGEVV 432 >gi|205356112|ref|ZP_03222879.1| hypothetical protein Cj8421_1497 [Campylobacter jejuni subsp. jejuni CG8421] gi|205345955|gb|EDZ32591.1| hypothetical protein Cj8421_1497 [Campylobacter jejuni subsp. jejuni CG8421] Length = 439 Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 104/375 (27%), Positives = 186/375 (49%), Gaps = 21/375 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ S GC N+ DS M YE + AD++++NTC + A ++ + Sbjct: 3 KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y R+ E++ + Sbjct: 58 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERVDEMILKKT- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ Y + +R I+ G + AF+ I EGC++ C+FC +P +G SR Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +S ++ E + L+ G + + + Q+ +++ GEK L+ + +IKG+ R Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P S+ LIK ++ + Y +P+Q SD +LK M R + +++++ ++S Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ + + FIVG PGE++ DF + V G+ + F YS T +M EQV Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVSFK 341 Query: 386 VKAERLLCLQKKLRE 400 V +RL ++K + E Sbjct: 342 VINKRLKIIEKIVNE 356 >gi|212693204|ref|ZP_03301332.1| hypothetical protein BACDOR_02714 [Bacteroides dorei DSM 17855] gi|212664309|gb|EEB24881.1| hypothetical protein BACDOR_02714 [Bacteroides dorei DSM 17855] Length = 432 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 119/448 (26%), Positives = 208/448 (46%), Gaps = 39/448 (8%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 GC N+ DS ++ + GY+ + D ++ V+NTC A E+ + + L Sbjct: 12 GCSKNLVDSEKLMRQLEANGYKVTHDSDKPQGEIAVINTCGFIGDAKEESINMI-----L 66 Query: 91 KNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + + KE G L + V GC+++ +E+ P V+ G + ELL A GK Sbjct: 67 EFCQAKEEGKLKKLYVMGCLSERYLKELALEIPQVDKFYGK---FNWNELL--ADLGKA- 120 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 Y E ER Y A+L I EGCD+ C++C +P G ISR + + Sbjct: 121 ----YKAEFAIERTLTTPHHY-------AYLKISEGCDRKCSYCAIPIITGRHISRPMEE 169 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTS 268 ++DE + L+ GV E ++ Q + + G+D K +L+ ++ + G+ +R + Sbjct: 170 IIDEVKLLVSEGVKEFQIIAQELTYY---GVDLYKSQKLPELIERIANVPGVEWIRLHYA 226 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P + L + + D + Y+ + +Q SD +L M R + E ++I++ R P Sbjct: 227 YPAHFPEELFRVMREHDNVCKYMDIALQHISDNMLNKMRRHVSKAETYELIEKFRREVPG 286 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDENVK 387 I + + +VG PGE ++DF + V K+ + + +F YS GT + E + VK Sbjct: 287 IHLRTTLMVGHPGEAEEDFEELKEFVKKVRFDRMGAFAYSEEEGTFAAKEYEDSISHEVK 346 Query: 388 AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL--- 440 +RL L +E + +G+ +V+I++ KE +GR SP + VL Sbjct: 347 QQRLDELMALQQEIAGELSQTKIGKEFKVIIDR--KEGDYYIGRTQFDSPEVDPEVLIKA 404 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG+ KV+IT LY ++ Sbjct: 405 DDEYLKIGEFYKVKITAADDFDLYASIL 432 >gi|86136536|ref|ZP_01055115.1| RNA modification enzyme, MiaB-family protein [Roseobacter sp. MED193] gi|85827410|gb|EAQ47606.1| RNA modification enzyme, MiaB-family protein [Roseobacter sp. MED193] Length = 470 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 131/460 (28%), Positives = 203/460 (44%), Gaps = 47/460 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 33 SLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 89 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ AE + I P + V GP Y ++ + + A V Sbjct: 90 ----LKENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHAA------V 136 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D + F L G R + +L I EGC+ C FC++P RG SR V Sbjct: 137 PAD---PNPFIDLLPATGVQLTPRHFS-YLKISEGCNHKCKFCIIPDMRGKLASRPAHAV 192 Query: 211 VDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA KL+ GV E+ ++ Q+ VN W + S L L+ Sbjct: 193 LREADKLVKAGVKELLVISQDTSAYGLDRKYDVNPWNEGEVRSHILDLSRELGKLAPADE 252 Query: 260 L-VRLRYTTSHP--RDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR-RHTAYE 314 L VRL Y +P RD LI D D L+PY+ +P Q +LK M R HTA Sbjct: 253 LWVRLHYVYPYPHVRD----LIPLMADPDNALLPYMDIPFQHSHPDVLKRMARPAHTAKT 308 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +I R + PDI + S FIVG+PGET+ +F+ +D +D+ + FKY G Sbjct: 309 LTEIA-AWREICPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYENVDGAR 367 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVGR 431 + + + V E VK ER +K + + A VGQI +V+ I++ G + Sbjct: 368 SNALPDHVAEEVKQERWERFMEKAQAISEAKLQAKVGQICQVIVDDIDEDGIATCRTKAD 427 Query: 432 SPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468 +P + + + ++GD++ V + + L+G + Sbjct: 428 APEIDGNLFIDEGTGGLSVGDLVTVEVDEAGDYDLWGRVA 467 >gi|86149347|ref|ZP_01067578.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596431|ref|ZP_01099668.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter jejuni subsp. jejuni 84-25] gi|218563057|ref|YP_002344836.1| putative radical SAM domain family protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|123336653|sp|Q0P8G1|RIMO_CAMJE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|85840129|gb|EAQ57387.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191272|gb|EAQ95244.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter jejuni subsp. jejuni 84-25] gi|112360763|emb|CAL35562.1| putative radical SAM domain family protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315930834|gb|EFV09826.1| RNA modification enzyme, MiaB family protein [Campylobacter jejuni subsp. jejuni 305] Length = 439 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 104/375 (27%), Positives = 187/375 (49%), Gaps = 21/375 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ S GC N+ DS M + YE + AD++++NTC + A ++ + Sbjct: 3 KLYLMSLGCNKNLVDSEIM--LGHLSAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y R+ E++ + Sbjct: 58 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ Y + +R I+ G + AF+ I EGC++ C+FC +P +G SR Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +S ++ E + L+ G + + + Q+ +++ GEK L+ + +IKG+ R Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P S+ LIK ++ + Y +P+Q SD +LK M R + +++++ ++S Sbjct: 224 LYLYPTSASEALIKRIIASEIFINYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ + + FIVG PGE++ DF + V G+ + F YS T +M EQV Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFDM-EQVPFK 341 Query: 386 VKAERLLCLQKKLRE 400 V +RL ++K + E Sbjct: 342 VINKRLKIIEKIVDE 356 >gi|156938206|ref|YP_001436002.1| RNA modification protein [Ignicoccus hospitalis KIN4/I] gi|156567190|gb|ABU82595.1| RNA modification enzyme, MiaB family [Ignicoccus hospitalis KIN4/I] Length = 423 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 118/447 (26%), Positives = 216/447 (48%), Gaps = 38/447 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + + ++YGC + + ++ R+ + S+GYE V ++AD ++ TC +R + +++ Sbjct: 2 KIYYETYGCAVMLGEAERVLEELKSKGYEVVGRPEEADASIIFTCTVRSETEQRM---AW 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI+ L + K ++V GC+A A+ + P ++V + +E A Sbjct: 59 RIKELCKASKK------LIVTGCLASAQPGLVKMVCPRASIVSNSSLHE-----IELALK 107 Query: 146 GKRVVDTDYSVEDKFER---LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ Y ++ + R + GG+ + I +GC CTFC+ R Sbjct: 108 GEK----KYLLKGQRPRDWLKGVTPGGFR------VVIPIADGCLGNCTFCITKVARPRL 157 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-KGLV 261 +S+ +++ A K + G EI L +V A+ GK + E DLL L ++ V Sbjct: 158 VSQRPDSIIEYALKGVKRGAKEIWLTAPDVAAY-GKEIGLE---LPDLLEKLLKVLPENV 213 Query: 262 RLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 +R P R++ D I D V + HLP+QS SD++L+ M RR+T E+ +I Sbjct: 214 YVRVGMMSPDTFREVMDRTIDVMRDPRVFK-FFHLPLQSASDKVLRLMGRRYTYSEFVEI 272 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++++R D I++D +VGFPGE +DDF T+ + ++ + + Y+PR T G+ M Sbjct: 273 VNKVRKAFNDPTIATDVMVGFPGEEEDDFELTLKALRELAFERVHLAAYTPRPLTLGARM 332 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 QV E+VK+ R+ + V + VG + ++++ ++ G V R W + Sbjct: 333 -PQVREDVKSRRVKRAMNVIEAVGVEVHKRYVGGKFKAFVDEYDQKHGTFVARL-WNYTP 390 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465 V+ + ++G+ I V+I L G Sbjct: 391 VVLREESSLGEEIVVKIEGATFYDLRG 417 >gi|302346577|ref|YP_003814875.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella melaninogenica ATCC 25845] gi|302150859|gb|ADK97120.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella melaninogenica ATCC 25845] Length = 433 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 128/456 (28%), Positives = 208/456 (45%), Gaps = 51/456 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK-VYSFLGRI 87 + GC N+ DS + F G+ + ++ V+NTC E A E+ + + L I Sbjct: 10 TMGCSKNLVDSELIMKQFEENGFHCTHDSKRPQGEIAVINTCGFIEAAKEESINTILEFI 69 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-- 145 KN ++ + + V GC++Q +E+ P V+ G Y +L L +A Sbjct: 70 NRKKNGQLNK-----LYVMGCLSQRYKDELEAELPEVDKFYGKFNYKQLLTDLGKADVPA 124 Query: 146 --GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G R + T A++ I EGCD+ C +C +P G Sbjct: 125 CNGVRHLTTPRHY---------------------AYVKIAEGCDRHCAYCAIPLITGRHH 163 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SRS+ +++DE R L+ GV E ++ Q + + G LDG K ++L+ +++I+G+ + Sbjct: 164 SRSVEEILDEVRGLVAQGVKEFQIIEQELTYY-GVDLDG-KHHITELISRMADIEGVEWI 221 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++P + + + YL + Q SD +L M R + E +I IR Sbjct: 222 RLHYAYPNQFPLDFLDVIAEKPNVCKYLDIAFQHISDHMLDRMRRHVSKQETLDLIAEIR 281 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQV 382 P I + + +VGFPGETD+DF + V + + +F YS GT +N + V Sbjct: 282 RRVPGIHLRTTLLVGFPGETDEDFEELKEFVTNARFERMGAFSYSEEEGTYSANHYKDDV 341 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435 E+VK R L+ +Q+ + E+ VG+ +V+I++ KE VGR SP + Sbjct: 342 PEDVKQARLDELMAIQQGISEE---LEAEKVGKTFKVIIDR--KEGEYYVGRTEFCSPEV 396 Query: 436 QSVVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468 VL S K+ IG V ITD L+GE+V Sbjct: 397 DPEVLISSTEKSLRIGKFYDVCITDSDEFDLFGEVV 432 >gi|189499918|ref|YP_001959388.1| MiaB-like tRNA modifying enzyme YliG [Chlorobium phaeobacteroides BS1] gi|238065323|sp|B3EPX5|RIMO_CHLPB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|189495359|gb|ACE03907.1| MiaB-like tRNA modifying enzyme YliG [Chlorobium phaeobacteroides BS1] Length = 442 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 117/400 (29%), Positives = 189/400 (47%), Gaps = 37/400 (9%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGR 86 F+ S GC N DS R+ +G N D+AD++++NTC I + E + L Sbjct: 16 FLLSLGCSKNTVDSERLIGQARRKGLSFTNEPDEADIVIINTCGFIADAKTESIDEILAA 75 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 KN I+ + V GC++ E+ P V+ G LPE+L Sbjct: 76 AEKRKNGEIE-----ALYVMGCLSALYAAELRAELPEVDRFFGTAD---LPEIL------ 121 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++ T Y +FER + Y A+L + EGC + C+FC +P RG S S Sbjct: 122 -NILGTAYDPATRFERSLLSPSHY-------AWLKLSEGCSRTCSFCAIPKMRGRYKSES 173 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLSEIK-GLVRLR 264 + ++ EA +L GV E+ L+ Q++ + GLD + +DL+ LS++ +RL Sbjct: 174 MEDLLQEATRLKAKGVKELNLIAQDITPY---GLDLYGTSRLNDLMRELSDLNFDWIRLL 230 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y ++P D +I + + + YL +PVQ DRIL SM R +++ IR Sbjct: 231 Y--AYPLDFPLEVIDTMRERENICDYLDMPVQHICDRILASMKRGIDKQGTIGLLESIRK 288 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVD 383 P+I + + IVG+PGET +F + V + + + F YS T + LE + Sbjct: 289 RNPNIRLRTTMIVGYPGETRAEFEELLQFVREFRFDRLGCFPYSHEEHTAAYDNLEDDIP 348 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 E K ER L+ LQ+ + E++ N A + ++VL+E+ Sbjct: 349 EEEKQERVGELMELQEGISEKK---NRALEEKALKVLVEE 385 >gi|72390349|ref|XP_845469.1| tRNA modification enzyme [Trypanosoma brucei TREU927] gi|62359495|gb|AAX79931.1| tRNA modification enzyme, putative [Trypanosoma brucei] gi|70802004|gb|AAZ11910.1| tRNA modification enzyme, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 535 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 123/456 (26%), Positives = 212/456 (46%), Gaps = 39/456 (8%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FV ++GC NV D M GY + AD +LN+C ++ + E S + R Sbjct: 53 IFVHTFGCGHNVSDGEYMAGQLVESGYNVTDEFGQADAYLLNSCTVKNPSEEHFVSMMNR 112 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R+ ++VAGCV QA+ ++ V+VV G ++ + +++ A G Sbjct: 113 VRDTGKP---------LIVAGCVPQADPTN--KQWGDVSVV-GVRSIDCVSYVVQEALQG 160 Query: 147 KRV----VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 V D ++ L +D R+ + I GC CT+C RG Sbjct: 161 NCVRLLGETEDQRQSNESNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGDL 220 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS----EIK 258 S + +VD R+++ +GV EI L ++ A+ G+D +D++Y L E++ Sbjct: 221 RSYPVEVIVDRVREVVRDGVKEIRLTSEDSGAY---GID----IGTDVVYLLRAVAVELE 273 Query: 259 GL-VRLRYTTSHPRDMSDCLIKAHGDLDVL-----MPYLHLPVQSGSDRILKSMNRRHTA 312 G V LR S+P + L G VL ++H+PVQSGSD IL++M R +T Sbjct: 274 GTDVMLRVGMSNPPYL---LRHVDGFATVLKHPNVYEFVHIPVQSGSDSILQTMLREYTV 330 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 E+ ID IR+ P +++D I FPGE + +++ TM+L + + ++ PR Sbjct: 331 EEFFMCIDSIRAAVPKATVATDIICAFPGEGESEWQETMELCKRAKFEVINITRFYPRRN 390 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 TP + M +Q+ +V R L + +F D+ VG++ V + + +K LVG + Sbjct: 391 TPAAAM-KQIPTDVAKHRTTELTNFFNSYR-TF-DSMVGEVHNVTLLETAHDKHHLVGHT 447 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V+++ +G+ + V IT ++ G ++ Sbjct: 448 KNYVQVLVDPAQARMGESVVVVITSATKYSVMGRVL 483 >gi|258404284|ref|YP_003197026.1| MiaB-like tRNA modifying enzyme YliG [Desulfohalobium retbaense DSM 5692] gi|257796511|gb|ACV67448.1| MiaB-like tRNA modifying enzyme YliG [Desulfohalobium retbaense DSM 5692] Length = 438 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 121/455 (26%), Positives = 210/455 (46%), Gaps = 45/455 (9%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQG--YERVNSMDDADLIVLNTCHIREKAAEKVY 81 P R F S GC N D+ E + + G Y + AD++++NTC E A E+ Sbjct: 6 PLRVFTISLGCPKNRVDT---EFLLGALGGAYAPAQDITSADVVLINTCAFIEPAVEESV 62 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + + + + + L+ V GC+ G+++ P V++ LP L E Sbjct: 63 QQILEVADDISDLVPRP---LLAVTGCLVARYGQDLKAGLPEVDL--------WLP-LAE 110 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNR---KRGVTAFLTIQEGCDKFCTFCVVPYT 198 + ++G+R+ ++ F GG R +A+L I EGCD C FC++P Sbjct: 111 QDQWGERLAQ---ALGRSFP------GGRERILTTGPASAYLKISEGCDHACRFCIIPQL 161 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG SR + ++V EA L+D G E+ L+ Q+V+ + G+ L G + L+ +LS + Sbjct: 162 RGPLQSRPVEELVREAGSLVDQGARELVLVAQDVSNY-GQDL-GMRQGLQRLVEALSAVP 219 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 GL +R +P ++ L++ D +++P +P+Q IL M R YR Sbjct: 220 GLDWIRLLYLYPVGVTTELLRFLRDSAPLVVPSFDIPLQHAHPDILTQMGRPFARDPYR- 278 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +I +R V P A+ + IVG+PGE + F V ++ + F Y GTP + Sbjct: 279 VIATVRDVLPQAALRTSLIVGYPGEKEAHFAYLRQFVQEVRFHNLGVFPYYAEEGTPAAT 338 Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 + +QV E VK +R ++ Q ++ E + ++C G ++VL+E+ L W Sbjct: 339 LPDQVPEAVKNDRREQIMGDQAQISE---TILESCQGTTMDVLVERPDPHWPTLFQGRVW 395 Query: 435 LQSVVLNS----KNHNI--GDIIKVRITDVKISTL 463 Q+ ++ H++ G ++ I + K L Sbjct: 396 FQAPEVDGVTYVSGHSLQAGQLVHAEIEESKTYDL 430 >gi|84514448|ref|ZP_01001812.1| RNA modification enzyme, MiaB-family [Loktanella vestfoldensis SKA53] gi|84511499|gb|EAQ07952.1| RNA modification enzyme, MiaB-family [Loktanella vestfoldensis SKA53] Length = 462 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 120/459 (26%), Positives = 205/459 (44%), Gaps = 49/459 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY A+ +++NTC + A + +G Sbjct: 32 SLGCPKALVDSERILTRLRAEGYAISADYAGAEAVIVNTCGFLDSAKAESLDAIGEA--- 88 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ AE + I P + V GP Y ++ + + A Sbjct: 89 ----LRENGK--VIVTGCLG-AEPDYIREHHPHILAVTGPHQYEQVLDAVHLAVPPS--- 138 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L G R + +L I EGC+ C FC++P RG+ SR V Sbjct: 139 ------PDPFIDLLPATGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGLLNSRPAHAV 191 Query: 211 VDEARKLIDNGVCEITLLGQ-----------NVNAWRGKGLDGE-KCTFSDLLYSLSEIK 258 + EA KL+ GV E+ ++ Q ++N W+ DG+ + +DL L ++ Sbjct: 192 LREAEKLVQAGVRELLVISQDTSAYGLDRKYDLNPWK----DGQVRSHITDLTRELGQLG 247 Query: 259 GLVRLRYTTSHP--RDMSDCLI-KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 VRL Y +P RD+ + A+G ++PYL +P Q +L+ M R + Sbjct: 248 AWVRLHYVYPYPHVRDLIPLMADPANG----VLPYLDIPFQHSHPDVLRRMARPAAGAKT 303 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I R++ PDI + S FIVG+PGET+ +F+ +D +D + F+Y G Sbjct: 304 LDEIAAWRAICPDITLRSTFIVGYPGETEAEFQHLLDWLDAAQLDRVGCFQYENVAGARS 363 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVGRS 432 + + + V VK +R K + + A VG+ +EV+ I++ G + + Sbjct: 364 NTLPDHVPAEVKQDRWDRFMAKAQAISAAKLAAKVGKRLEVIVDDIDEDGIATCRTWADA 423 Query: 433 PWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468 P + + ++ ++GDI++V + + L+G L Sbjct: 424 PEIDGNLFIDEGTEALSVGDIVQVVVDEAGEYDLWGGLA 462 >gi|300788129|ref|YP_003768420.1| 2-methylthioadenine synthetase [Amycolatopsis mediterranei U32] gi|299797643|gb|ADJ48018.1| 2-methylthioadenine synthetase [Amycolatopsis mediterranei U32] Length = 478 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 125/482 (25%), Positives = 210/482 (43%), Gaps = 57/482 (11%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 M S D P+R + + GC N DS + + G+E +D+D++V+NTC Sbjct: 1 MPSPATDPA-APRRVSLLTLGCARNEVDSEELAGRLAAGGWELAADPEDSDVVVVNTCGF 59 Query: 73 REKAA-EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131 E A + V + L K VV GC+A+ G E+ P + V+G Sbjct: 60 VESAKKDSVDTLLAASDTGKK----------VVAVGCMAERYGHELADSLPEADAVLGFD 109 Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSI-------------VDGGYNRKRGV-- 176 Y L L+ G+++ ++ D+ + L I V G G Sbjct: 110 HYADLSARLDDVVAGRKIAS--HTPGDRRKLLPISPVQRPAAAETVEVPGHAQHGWGPRV 167 Query: 177 ---------TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227 A L I GCD+ C+FC +P RG +SR ++V EA L ++GV E+ L Sbjct: 168 LRTRLDDAPVAALKIASGCDRRCSFCAIPSFRGSFVSRQPDEIVAEAMWLAEHGVKELFL 227 Query: 228 LGQNVNAWRGK--GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285 + +N ++ GK G DG LL L+EI G+ R+R + P + L+KA Sbjct: 228 VSENSTSY-GKDFGRDG-ATALERLLPRLAEIDGIERVRVSYLQPAETRPQLVKAIATTP 285 Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345 + Y L Q S+++L+ M R + + + ++IR P+ I ++ IVGFPGET+ Sbjct: 286 GVAEYFDLSFQHSSEQVLRRMRRFGSTDSFLALCEQIREYAPEAGIRTNVIVGFPGETEH 345 Query: 346 DFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400 D T +D +G F YS GT ++D R+ + + E Sbjct: 346 DLAELERFLTGARLDAVGV-----FGYSDEDGTEAETFDGKLDPEEVGRRVTRISALVEE 400 Query: 401 QQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWL--QSVVLNSKNH-NIGDIIKVRI 455 + +G ++VL+E G+ G+ ++P + + ++L++ +GD ++ + Sbjct: 401 LTTQRAEDRIGTFVDVLVELDDDGELTGRAAHQAPEVDGECIILDAPEKVQVGDFLRCEV 460 Query: 456 TD 457 D Sbjct: 461 VD 462 >gi|94969171|ref|YP_591219.1| hypothetical protein Acid345_2144 [Candidatus Koribacter versatilis Ellin345] gi|123381489|sp|Q1IPQ5|RIMO_ACIBL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|94551221|gb|ABF41145.1| SSU ribosomal protein S12P methylthiotransferase [Candidatus Koribacter versatilis Ellin345] Length = 504 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 131/499 (26%), Positives = 217/499 (43%), Gaps = 66/499 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYS 82 P++ S GC N+ DS M + + G E +DAD+IV+NTC + A E V + Sbjct: 18 PKKVGFVSLGCPKNLVDSEVMMGLLATNGAEITARAEDADIIVVNTCSFIDTAKQESVDT 77 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSP-------------------- 122 L + R ++ ++VAGC+ + EI + P Sbjct: 78 ILEMAGHKATGRAQK-----LIVAGCLVERYRNEIQKNIPEVDAVVGTGELEAILAASGI 132 Query: 123 ------------IVNVVVGPQTYYR----LPELLERARFGKRV-VDTDYSVEDKFERLSI 165 I+N Q PE R G+ D D +V D L Sbjct: 133 EPRKSEANSPFVILNSTSASQQLKSGIADRPEGAAREEAGRFARTDWDGAVADLPNYL-- 190 Query: 166 VDGGYNRKRGVT---AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222 D R A++ + EGCD C+FC++P RG SR VV EA +L GV Sbjct: 191 YDENTPRVLATPKYMAYIKVAEGCDHPCSFCIIPQLRGKFRSRRFESVVAEAERLAKQGV 250 Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282 EITL+GQ+ + G+ L G K + LL L++I+ L +R+ ++P ++ L++ Sbjct: 251 KEITLIGQDTTCY-GEDL-GLKDGLAQLLERLAQIEELQWVRFLYAYPNKITKRLLQTIA 308 Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342 D + Y+ +P+Q + +LK M R + + I+ +R V PD+ + + FIVGFPGE Sbjct: 309 DNPKIPKYMDVPLQHSAANVLKRMKRGAHGDIFLKSIEEMRRVIPDLTLRTSFIVGFPGE 368 Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE---NVKAERLLCLQKKLR 399 T++DF + V F YS G + E+V + ++L+ LQK++ Sbjct: 369 TEEDFNQLCEFVKAAQIDWLGVFSYSDEEGAKAFALDEKVPPREIERRRKKLMSLQKQIS 428 Query: 400 EQQVSFNDACVGQIIEVLIEKHGKE-----KGKLVGRSPWLQSVV-----LNSKNHNIGD 449 +++ A +G+ +V++E +E +G+ +P + V +N G Sbjct: 429 KKK---RKALIGREFDVILEGPSEETDLLWEGRTAMHAPEIDGKVYINDFAEHENVEPGQ 485 Query: 450 IIKVRITDVKISTLYGELV 468 + + IT+ L L+ Sbjct: 486 VFRCEITEAHDYDLVARLL 504 >gi|319902104|ref|YP_004161832.1| SSU ribosomal protein S12P methylthiotransferase [Bacteroides helcogenes P 36-108] gi|319417135|gb|ADV44246.1| SSU ribosomal protein S12P methylthiotransferase [Bacteroides helcogenes P 36-108] Length = 432 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 121/450 (26%), Positives = 209/450 (46%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS + GY + + + V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEHLMRQLEGVGYHVTHDSEHPKGQIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE GDL + V GC+++ +E+ P V+ G + L + L +A Sbjct: 66 -LEFAQAKEAGDLEKLYVMGCLSERYLKELAVEIPQVDKFYGKFNWKELLQDLGKA---- 120 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER Y A+L I EGCD+ C++C +P G +SR + Sbjct: 121 ------YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGKHVSRPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE + L+ GV E ++ Q + + G+D +K +L+ +SEI G+ +R Sbjct: 168 EEILDEVKYLVAEGVKEFQVIAQELTYY---GVDLYKKQMLPELIEHISEIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + + Y+ + +Q SD +L M R T E Q+I++ R+ Sbjct: 225 YAYPAHFPMELFRVMRERSNVCKYMDIALQHISDNMLMRMRRHVTKAETYQLIEKFRNEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385 P I + + +VG+PGET+ DF D V K+ + + +F YS GT + E V + Sbjct: 285 PGIHLRTTLMVGYPGETEADFEELKDFVHKVRFDRMGAFAYSEEEGTYAAATYEDSVPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440 VK +RL L + + A +G+ ++V+I++ E VGR SP + VL Sbjct: 345 VKQKRLDDLMTIQQGISAELSTAKIGKRMKVIIDR--LEGDYYVGRTEFDSPEVDPEVLI 402 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468 K+ IG+ + I + L+G++V Sbjct: 403 KRKDKDLLIGNFYQTEIINSDDFDLFGQIV 432 >gi|271963703|ref|YP_003337899.1| RNA modification enzyme, MiaB-family [Streptosporangium roseum DSM 43021] gi|270506878|gb|ACZ85156.1| RNA modification enzyme, MiaB-family [Streptosporangium roseum DSM 43021] Length = 469 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 121/460 (26%), Positives = 205/460 (44%), Gaps = 48/460 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N DS + + G++ + DD D+IV+NTC + A + L Sbjct: 11 TLGCARNEVDSEELAARLEAAGWQVGD--DDPDVIVVNTCGFIDSAKKDSIDTL---LAA 65 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +S K VV AGC+A+ G+++ P V+ Y ++ L+ GK +V Sbjct: 66 ADSGAK------VVAAGCMAERYGDQLADALPEAAAVISFDDYTQIGTRLDDVLEGKPLV 119 Query: 151 DTDYSVEDKFERLSIVD-----------GGYN---------------RKR---GVTAFLT 181 +S D+ L I G+ RKR G A L Sbjct: 120 P--HSPRDRRTLLPISPVERAAAPKANIPGHGELPDGLAPASGPRPLRKRLGDGPVASLK 177 Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241 + GCD+ CTFC +P RG +SRS ++V EA L GV E+ L+ +N ++ GK L Sbjct: 178 LASGCDRRCTFCAIPAFRGAYVSRSPEELVSEAAWLAGQGVKELVLVSENSTSY-GKDL- 235 Query: 242 GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301 G+ LL SL+ +G+ R+R + P ++ L++ + + PY L Q S Sbjct: 236 GDLRALEKLLPSLAATEGIERVRVSYLQPAELRPGLLEMIASTESVAPYFDLSFQHASGS 295 Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361 +L+ M R + +++ +R+ P+ + S+FIVGFPGET+++F + + Sbjct: 296 VLRRMRRFGDPRRFLDLLESVRATAPEAGVRSNFIVGFPGETEEEFAELTAFLQEARLDV 355 Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK- 420 F YS GT +++ ++D+ R+ L + E + +G ++VLIE+ Sbjct: 356 IGVFGYSDEDGTEAASLPGKLDQETVDARVAALTELAEELMAQRAEERIGTEVDVLIEED 415 Query: 421 --HGKEKGKLVGRSPWLQ-SVVLNSKNHNIGDIIKVRITD 457 G +G+ + P + SV + G I++ + D Sbjct: 416 LGDGGYEGRAAHQGPEVDGSVTVQGIGLVPGQIVRAVVVD 455 >gi|152992605|ref|YP_001358326.1| tRNA modifying enzyme [Sulfurovum sp. NBC37-1] gi|151424466|dbj|BAF71969.1| tRNA modifying enzyme [Sulfurovum sp. NBC37-1] Length = 417 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 107/375 (28%), Positives = 189/375 (50%), Gaps = 38/375 (10%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK 79 + ++ F K++GC+ N +D+ M S+ E S DD +D+IV+N+C + A Sbjct: 1 MSSKKVFFKTFGCRTNQFDTQVM----MSKLSEFELSQDDTQSDIIVVNSCTVTNGADSS 56 Query: 80 VYSFLGRI-RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 V +++ I R N+R V++AGC + ++GE + + V+ G + E Sbjct: 57 VRNYISSIQRKNPNAR--------VILAGCGSHSKGEALFEDEKVFGVM-GHSEKENINE 107 Query: 139 LLER-ARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 +L++ RF Y + D E + +IV+ + R AF+ IQEGCD C++C++ Sbjct: 108 ILKKETRF--------YEIGD-LEHIDSTIVEEFVGKSR---AFIKIQEGCDFRCSYCII 155 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 P RG S ++++ RKL NG E L G NV ++ G+ D + + LL +S Sbjct: 156 PAVRGNARSHREETILEQIRKLAANGFGEFILTGTNVGSY-GRDHD---TSMAKLLKKMS 211 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 I+G+ R+R + P + D ++ + + +LH+ +Q SDR+L+ MNRR+ Sbjct: 212 MIRGVRRIRIGSLEPVQIDDEFMELLSE-PWMAKHLHIALQHTSDRMLELMNRRNRFATD 270 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 ++ RI A+ +D+IVG PGE + +++ + V ++ +F YS R T Sbjct: 271 LELFHRI--AEKGYALGTDYIVGHPGEDEKEWKEGISRVKELPLTHVHAFSYSKRDNTAS 328 Query: 376 SNMLEQVDENVKAER 390 + M ++ N+ ER Sbjct: 329 AVMKPEIRGNIAKER 343 >gi|86151990|ref|ZP_01070203.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter jejuni subsp. jejuni 260.94] gi|85841098|gb|EAQ58347.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter jejuni subsp. jejuni 260.94] Length = 439 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 103/371 (27%), Positives = 184/371 (49%), Gaps = 21/371 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ S GC N+ DS M YE + AD++++NTC + A ++ + Sbjct: 3 KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y R+ E++ + Sbjct: 58 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ Y + +R I+ G + AF+ I EGC++ C+FC +P +G SR Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +S ++ E + L+ G + + + Q+ +++ GEK L+ + +IKG+ R Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P S+ LIK ++ + Y +P+Q SD +LK M R + +++++ ++S Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKST 283 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ + + FIVG PGE++ DF + V G+ + F YS T +M EQV Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVPFK 341 Query: 386 VKAERLLCLQK 396 V +RL ++K Sbjct: 342 VINKRLKIIEK 352 >gi|255075877|ref|XP_002501613.1| predicted protein [Micromonas sp. RCC299] gi|226516877|gb|ACO62871.1| predicted protein [Micromonas sp. RCC299] Length = 435 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 131/459 (28%), Positives = 207/459 (45%), Gaps = 48/459 (10%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + VK++GC N DS M + GY+ V DDAD+ V+NTC ++ + + + + Sbjct: 8 KVHVKTFGCSHNHSDSEFMAGQLGAYGYDLVTDPDDADVWVVNTCTVKNPSQSAMNTVI- 66 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLERA 143 ++ K G LV+ AGCV Q + +E+ S ++G R+ +++ER Sbjct: 67 -------TKGKAQGKKLVI-AGCVPQGDKKAKELEDLS-----LIGVTQIDRIVDVVERT 113 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G D +E K L +D R+ L + GC CT+C + RG Sbjct: 114 LAG----DAVRLLEKK--PLPSLDLPKVRRNEHVEILPLSTGCLGQCTYCKTKHARGELG 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI---KGL 260 S S +V + I GV EI L ++ A+ G+D + LL L+ + G Sbjct: 168 SYSPEALVQRVQTAIAEGVTEIWLSSEDTGAY---GID-LGTDITRLLRDLTAVLPTDGS 223 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDL-------DVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LR ++P I AH D + +LH+PVQ+GSD +L M R + Sbjct: 224 CMLRLGMTNPP-----YILAHLDAVAEAMHHPSVYAFLHIPVQAGSDAVLDRMKREYVVA 278 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 E+ ++ D + + P I I++D I GFPGET +D+ TM L K + + ++ PR GT Sbjct: 279 EFEKVADTLLAKVPGITIATDIICGFPGETSEDWEKTMALCRKYEFVELHLSQFYPRPGT 338 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP 433 P + M ++VD R L + + +DA VG V + K+K LVG + Sbjct: 339 PAARM-KRVDTKEVKRRSRELTAYI--ESYRPHDALVGTTQRVWVTDVAKDKVSLVGHTK 395 Query: 434 WLQSVVLNSKNHN----IGDIIKVRITDVKISTLYGELV 468 V+L N +G +VRI D + GE++ Sbjct: 396 SYVQVLLPGGEANRARLMGKSAEVRIIDAHRWHVTGEVI 434 >gi|94267152|ref|ZP_01290784.1| Protein of unknown function UPF0004 [delta proteobacterium MLMS-1] gi|93452120|gb|EAT02794.1| Protein of unknown function UPF0004 [delta proteobacterium MLMS-1] Length = 323 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/301 (32%), Positives = 156/301 (51%), Gaps = 16/301 (5%) Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237 A+L + EGCD C++C++P RG SR L ++ EAR L GV E+TL+ Q++ A+ Sbjct: 27 AYLKVTEGCDNRCSYCLIPALRGPLRSRPLPDLLLEARALAAAGVKELTLVAQDLTAY-- 84 Query: 238 KGLDGEKCT-FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 GLD +LL +L + LR +P + + L++ + L+PY LP Q Sbjct: 85 -GLDQRGAPRLPELLKALLAETAIPWLRLLYLYPSRVDEGLLRLVAENPRLLPYFDLPFQ 143 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 +D +LK+MNR + RQ++ RIR + P+ AI S FIVGFPGE+++D + + Sbjct: 144 HVADHLLKAMNRPYGEKLIRQLVGRIRQLVPEAAIRSTFIVGFPGESEEDSQRLAAFLRD 203 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQI 413 Q F Y P G+P + + +Q D+ +K R L+ LQ + + N A +G Sbjct: 204 CRLEQVGIFTYYPEEGSPAAELPDQCDDQLKEGRRRQLMALQADI---SLQINRARIGTR 260 Query: 414 IEVLIEKHGKE-----KGKLVGRSPWLQSVV-LNSKNHNIGDIIKVRITDVKISTLYGEL 467 EVL+E E +G+L ++P + V + N GD+++VRI + L G + Sbjct: 261 QEVLVEGVSAETDLLLEGRLRQQAPEVDGCVYITEGNCRPGDLVQVRIDEAHPYDLVGAI 320 Query: 468 V 468 Sbjct: 321 T 321 >gi|330995100|ref|ZP_08319017.1| ribosomal protein S12 methylthiotransferase RimO [Paraprevotella xylaniphila YIT 11841] gi|329576676|gb|EGG58179.1| ribosomal protein S12 methylthiotransferase RimO [Paraprevotella xylaniphila YIT 11841] Length = 443 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 121/447 (27%), Positives = 207/447 (46%), Gaps = 35/447 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86 V + GC N+ DS ++ + GY+ + D ++ V+NTC A E+ + + Sbjct: 18 VITLGCSKNLVDSEKLMRQLEANGYKVTHDADRPQGEIAVINTCGFIGDAKEESINMI-- 75 Query: 87 IRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 L+ + KE G L + V GC+++ +E+ P V+ G + ELL A Sbjct: 76 ---LEFCQAKEEGRLKKLFVMGCLSERYLKELGEEIPQVDKFYGK---FDWNELL--ADL 127 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 GK Y E ER Y A+L I EGCD+ C++C +P G +SR Sbjct: 128 GKA-----YHQELSLERELTTPSHY-------AYLKISEGCDRRCSYCAIPIITGKHVSR 175 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 + +++E R L+ GV E ++ Q + + GLD + +L+ +++I G+ +R Sbjct: 176 PIEDILEEVRMLVSRGVKEFQVIAQELTYY---GLDLYHRQVLPELIERMADIPGVEWIR 232 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++P + L + + + Y+ + +Q SD +L+ M+R T E +I+R R Sbjct: 233 LHYAYPANFPVDLFRVMREKKNVCKYMDIALQHISDNMLQRMHRHVTRKETYDLIERFRE 292 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVD 383 P I + + +VG PGET++DF +D V K+ + + +F YS GT + E ++ Sbjct: 293 EVPGIHLRTTLMVGHPGETEEDFNELLDFVRKVKFDRMGAFSYSEEEGTYSAEHYEDEIP 352 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVLN 441 VK RL L +E +G++ +V+I++ E G+ SP + VL Sbjct: 353 FEVKQARLDKLMALQQEVSADLATRKIGKVFKVIIDRSEGEYYIGRTEFDSPEVDPEVLI 412 Query: 442 SK---NHNIGDIIKVRITDVKISTLYG 465 + G +V+ITD LYG Sbjct: 413 PACEGTLSFGAFYEVKITDADDFDLYG 439 >gi|21228284|ref|NP_634206.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1] gi|20906744|gb|AAM31878.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1] Length = 435 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 119/453 (26%), Positives = 221/453 (48%), Gaps = 30/453 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSF 83 + +++S+GC + + M+ G+E ++ + A++ + N+C ++ +K+ Sbjct: 2 KVYLESFGCSASQASAEIMKASIGKLGHELLSPENAGQAEVYICNSCTVKYTTEQKI--- 58 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L +IR++ ++ V+V+GC+ + + E+IL +P +++ G RL +LL Sbjct: 59 LYKIRSMGEKGVQ------VIVSGCMPEVQLEDILHANPEAHIL-GVNAVSRLGDLLSTI 111 Query: 144 RFGKRVVDTDYSVEDKFE-RLSIVDGGYN----RKRGVTAFLTIQEGCDKFCTFCVVPYT 198 K+ T ++ E R S G N R I +GC+ C++C+V + Sbjct: 112 EQRKK---TGIPGGERLEIRTSEPQGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHA 168 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG +S +++++ R + +G EI L Q+ + + G+D +LL ++SEI Sbjct: 169 RGKLLSFPPEEIIEDIRSAVADGCREIWLTSQDDSQY---GMD-TGVKLPELLRAISEIP 224 Query: 259 GLVRLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 G ++R +P + D L+ A D D + LHLP+QS S +LK MNR H Sbjct: 225 GDFKVRVGMMNPFSVLPILDDLVDAF-DSDKIFKLLHLPIQSASHSVLKKMNRLHKMDSV 283 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 +II + R+ D+++ +D IVGF ETD+DF T++ V K + +YSPR T Sbjct: 284 DEIITKFRAHFEDLSLFTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKA 343 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 + +D + +R L K + ++ + +G V + K+ E G ++ R+ Sbjct: 344 FS-FRNLDSRISVKRSHQLHKVCEQIKIESKNEMIGWKGRVFVSKY-TEIGDVLTRTDSY 401 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + VV++ + G+ +V+IT K G+LV Sbjct: 402 RPVVISGSDLRPGEYAEVKITGAKPGYFLGKLV 434 >gi|103488208|ref|YP_617769.1| MiaB-like tRNA modifying enzyme [Sphingopyxis alaskensis RB2256] gi|98978285|gb|ABF54436.1| MiaB-like tRNA modifying enzyme [Sphingopyxis alaskensis RB2256] Length = 441 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 111/412 (26%), Positives = 186/412 (45%), Gaps = 38/412 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R V ++GC++N+ + + + G D+IV+N+C + ++A + + Sbjct: 8 RVEVVNFGCRLNIAEGEAIRAAVKAAGAR--------DMIVVNSCAVTDEAVRQARQAVR 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAE-------GEEILRRSPIVNVVVG-------PQ 131 R ++E D VVV GC A+ E G ++R V ++G P+ Sbjct: 60 RA-------LRERPDAEVVVTGCAAELEAGRFAAMGARVVRND--VKGLIGSYGNTVSPR 110 Query: 132 TYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 + + LE A G + + +D F + + AFL +Q GC CT Sbjct: 111 RREPISDGLEMAPAGDGPPPSRGN-KDFFSGVRPFTPALSGADHARAFLGVQTGCSHSCT 169 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 FC RG S ++ VVD AR + G EI L G ++ ++ + T L Sbjct: 170 FCATVLARGAARSATVETVVDAARTALGRGQREIILTGVDLASY-----GDDSGTSLAAL 224 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 + RLR ++ P + + L +MP++HL +Q+G D +L M RRH Sbjct: 225 VEALLALPVERLRLSSLDPDRIDERLFALLTGESRVMPHVHLSLQAGDDMVLTRMKRRHR 284 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 + ++I+R+++ R +IAI +D I GFP E + F ++ L+D F YSPR Sbjct: 285 RADAVRLIERLKAARAEIAIGADLIAGFPTEDEAMFANSLALIDDCDVVFGHIFPYSPRA 344 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 GTP + M QV + ER L++ ++ + D VG+ +L+E+ GK Sbjct: 345 GTPAARM-PQVGRAIARERAAMLREANARRRRDWLDTQVGRTAAMLVERDGK 395 >gi|120610328|ref|YP_970006.1| ribosomal protein S12 methylthiotransferase [Acidovorax citrulli AAC00-1] gi|238065265|sp|A1TMP4|RIMO_ACIAC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|120588792|gb|ABM32232.1| SSU ribosomal protein S12P methylthiotransferase [Acidovorax citrulli AAC00-1] Length = 463 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 129/486 (26%), Positives = 211/486 (43%), Gaps = 76/486 (15%) Query: 18 VDQCIVPQRFF---VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74 +++ I P R + S GC + DS + ++GY+ + + ADL+++NTC + Sbjct: 1 MNETIAPARLPRIGMVSLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFID 60 Query: 75 KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE---EILRR-SPIVNVVVGP 130 A ++ +G + E G V+V GC+ GE ++R P V V GP Sbjct: 61 DAVKESLDTIGEA-------LAENGK--VIVTGCLGARAGEGGGNLVREMHPSVLAVTGP 111 Query: 131 QTYYRLPELLERARFGKRVVDTDYS----VEDKFERLSIVDGGYNRKRGVT------AFL 180 + V+D + D F + +V GG+ GV A+L Sbjct: 112 HAT-------------QEVMDAVHQNLPKPHDPF--IDLVPGGFGVA-GVKLTPRHYAYL 155 Query: 181 TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------ 234 I EGC+ CTFC++P RG +SR + V+ EA+ L + GV E+ ++ Q+ +A Sbjct: 156 KISEGCNHRCTFCIIPSMRGDLVSRPVGDVLSEAKALFEGGVKELLVISQDTSAYGVDVK 215 Query: 235 -----WRGKGLDGEKCTFSDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLD 285 W GK + K +L+ +L EI VRL Y +P A G + Sbjct: 216 YRTGFWDGKPV---KTRMLELVQTLGEIAEPYGAWVRLHYVYPYPSVDEVIPFMATGKI- 271 Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345 +PYL +P Q +L+ M R + + I R R P++ I S FI GFPGET++ Sbjct: 272 --LPYLDVPFQHSHPDVLRRMKRPASGERNLERIQRWREACPELVIRSTFIAGFPGETEE 329 Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405 +F+ +D + + +A F YS G + + + V+ ER E + Sbjct: 330 EFQHLLDFLREAQIDRAGCFAYSDVDGAVANELPGMLPMEVREERRARFMAVAEEVSIER 389 Query: 406 NDACVGQIIEVLIEKHGKEKGKLVGR------SPWLQSVVL------NSKNHNIGDIIKV 453 VG ++VL++ H G+ GR +P + VV SK +G+ + Sbjct: 390 LRRRVGATMQVLVD-HAPALGRKGGRGRSYADAPEIDGVVHLLPPEKISKQLKVGEFTRA 448 Query: 454 RITDVK 459 +I V+ Sbjct: 449 QIVGVQ 454 >gi|55379963|ref|YP_137813.1| hypothetical protein rrnAC3428 [Haloarcula marismortui ATCC 43049] gi|55232688|gb|AAV48107.1| unknown [Haloarcula marismortui ATCC 43049] Length = 427 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 117/452 (25%), Positives = 202/452 (44%), Gaps = 43/452 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ +++YGC N ++ ++E G+ + + AD+ +LNTC + EK + L Sbjct: 3 RYHIETYGCTSNRGETQQIEQALREGGHHPADGPESADVAILNTCTVLEKTER---NMLA 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R + L + + +V+ GC+A A+GEE V+ + +P+ + Sbjct: 60 RAKELDSETPAD-----LVITGCMALAQGEEFQSADIDAEVL----HWDDVPQYVLNGEC 110 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 DT+ + GV L I GC C++C+ G S Sbjct: 111 PTITPDTETVL-----------------NGVVGILPIARGCMSDCSYCITKQATGRIESP 153 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT--FSDLLYSL-SEIKGLVR 262 S+ + V++AR L+ G EI + GQ+ + G D + T +LL + S+I G R Sbjct: 154 SVEENVEKARALVHAGAKEIRITGQDTGVY---GWDTNQGTSLLPELLDRICSDIDGDFR 210 Query: 263 LRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +R ++P+ + + L + D L ++H PVQSGSD +L M R+H EY +++ Sbjct: 211 VRVGMANPKGLHGVREELAAVFAEHDELYNFIHAPVQSGSDDVLADMRRQHAVSEYLEVV 270 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + + +S+DFIVGFP E D +M L+ + + ++S R GT NM Sbjct: 271 ETLDDQLDYWTLSTDFIVGFPTEEPADHEQSMALLRETRPEKINVTRFSKRPGTDADNM- 329 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 + + +K +R + + E + VG VL+ + G ++ LVG + VV Sbjct: 330 KGLGGQIKKDRSKEMSEAKMELMAEAYEEMVGHTSSVLLVEDGTDE-SLVGYDEAYRQVV 388 Query: 440 L---NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IGD + V IT +GE + Sbjct: 389 IADAQERGLEIGDTVDVEITSHNTVYAFGEPI 420 >gi|222823299|ref|YP_002574872.1| radical SAM domain family (UPF0004 domain protein) [Campylobacter lari RM2100] gi|222538520|gb|ACM63621.1| conserved hypothetical protein, radical SAM domain family (UPF0004 domain protein) [Campylobacter lari RM2100] Length = 438 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 102/371 (27%), Positives = 181/371 (48%), Gaps = 21/371 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F+ S GC N+ DS M YE + AD++++NTC E A ++ + Sbjct: 3 KLFLMSLGCNKNLVDSEIMLGRL--SNYEICDEPSIADVLIVNTCGFIESAKKES---IN 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y ++ E++ + Sbjct: 58 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFSGVGDYEKIDEMILKKT- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + ++D+ I Y+ AF+ I EGC++ C+FC +P +G SR Sbjct: 114 --NLFSNSTYLQDENTNRVITGSNYH------AFVKIAEGCNQKCSFCAIPSFKGKLKSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 SL +V+E + L++ G + + + Q+ +++ G+K L+ ++ IKG+ R Sbjct: 166 SLESIVNEVKSLVEKGYKDFSFIAQDTSSYLFD--QGQKDGLIKLIDAIESIKGIKAARI 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P +S +I+ V + Y +P+Q SD +LK M R + ++++ +R Sbjct: 224 LYLYPTSISKEVIEKIIHSKVFVNYFDMPLQHISDNMLKIMKRGMNKTKLIELLNLMRKA 283 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ + + FIVG PGE+DDDF + + + + + F YS T NM EQ+ Sbjct: 284 -PNSFLRTGFIVGHPGESDDDFNELCEFLKEFSFDRISVFAYSKEEDTAAFNM-EQIPFK 341 Query: 386 VKAERLLCLQK 396 + RL ++K Sbjct: 342 IINSRLKKIEK 352 >gi|329765663|ref|ZP_08257235.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137855|gb|EGG42119.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia SFB1] Length = 422 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 121/449 (26%), Positives = 215/449 (47%), Gaps = 36/449 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + FV++YGC + DS + + + G+ + ++DL ++ TC +++ A K+ + Sbjct: 3 KIFVEAYGCSASFADSEMISGLIVNGGHTIAKNSTESDLNIVVTCSVKDSTANKM---IH 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI++LK+ + VVAGC+ +AE + + S +++ GP + + ++++ Sbjct: 60 RIKSLKSKPL--------VVAGCLPKAELSTVEKISKNASLL-GPNSLGKTLQVIDSTLR 110 Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G + V DTD LS V R V + I GC C+FC +G Sbjct: 111 GTKFVALEDTD---------LSKVGLPKVRLNEVVGIVEIASGCMSECSFCQTKLAKGDL 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S + +V + + G EI L + N G ++ + T L+ ++SEI Sbjct: 162 QSYRIGDIVRQVETEVSEGCKEIWLTSTD-NGCYGFDINTDLPT---LVKAVSEIPEDFM 217 Query: 263 LRYTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +R +P M + LI++ D + +LH+PVQSGSD++L M R HT +++++ Sbjct: 218 IRVGMMNPMYMPRIKNELIESFSS-DKVYKFLHIPVQSGSDKVLNDMRRGHTVNTFKEVV 276 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + R D IS+D IVGFP ET +DF T +L+++ KYS R GT + Sbjct: 277 KKARERFADFTISTDIIVGFPSETREDFEKTFELLNETSPDIVNLSKYSARPGTEAAEW- 335 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 EQ++ + R + ++ + + N +G +VL ++ K + GR+ +SV Sbjct: 336 EQIEASEVKRRSRIIFNQINKISLENNQKWIGWKGKVLFDE--KTDQGIKGRNFAYKSVF 393 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG V+ITD I ++ GE+ Sbjct: 394 VKDE-IKIGQTQTVKITDASIHSIIGEIA 421 >gi|239908955|ref|YP_002955697.1| hypothetical protein DMR_43200 [Desulfovibrio magneticus RS-1] gi|239798822|dbj|BAH77811.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 447 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 127/454 (27%), Positives = 198/454 (43%), Gaps = 43/454 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM--DDADLIVLNTCHIREKAAEKVYSF 83 R S GC N D+ E++ + + + ADL+V+NTC A E+ + Sbjct: 21 RVHTISLGCPKNRVDT---ENVLGGLPFATTPAATPEAADLVVVNTCSFIAPAVEESVAA 77 Query: 84 L----GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 + IR L + + V GC+ G+E+ P V++ P +P Sbjct: 78 ILEASEAIRELSPRPV-------LAVLGCLPSRFGQELRDGLPEVDIWGLPSELDLIPGR 130 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 L +A + T RL+ Y A+L I EGCD C +C +P R Sbjct: 131 LAKALSAESAAPTG--------RLASTPPSY-------AYLKIAEGCDHACRYCTIPSIR 175 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G +S+ L +V+E+R L+D G E+ ++ Q+V A+ G+ L G K LL L + G Sbjct: 176 GPLVSKPLDALVEESRGLLDKGASELVVVAQDVAAY-GRDL-GMKEGLKALLGKLLPLSG 233 Query: 260 LVRLRYTTSHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 L LR +P ++D L+ G +PY +P Q +L +M R A + Sbjct: 234 LKWLRLLYLYPSGVTDDLLAFLAGAGRPFVPYFDIPFQHVQPDMLAAMGRPKAA-SAETV 292 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + R+R D A+ S FIVG PGE + F + V++ F Y GTP + M Sbjct: 293 VARVRRHFSDAALRSTFIVGLPGEKKEHFETLLRFVNEARLNHVGVFPYHREEGTPAAAM 352 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGKLVGRSPWLQS 437 QV +VKA R+ + RE + VG+ EVL++ H + G VGR+ W Q+ Sbjct: 353 AGQVRSDVKARRVEAVMAAQREISADLLEDWVGRDTEVLVDSVHPEWPGLHVGRT-WFQA 411 Query: 438 VVLNSKNH------NIGDIIKVRITDVKISTLYG 465 ++ + G+++ I D K L G Sbjct: 412 PEIDGVTYVSGPGVAPGNMVTATIEDSKDYDLVG 445 >gi|222424602|dbj|BAH20256.1| AT4G36390 [Arabidopsis thaliana] Length = 310 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 143/288 (49%), Gaps = 39/288 (13%) Query: 221 GVCEITLLGQNVNAWRGKGLDGE-------------KCT-------FSDLLYSLSEIKGL 260 GV E+TLLGQNVN++ D E +C F+DLL LS Sbjct: 1 GVKEVTLLGQNVNSYNDDSADRESGANWEYSEGFSSRCKVKNMGLRFADLLDRLSVEFPE 60 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R R+T+ HP+D D L+ D + +HLP QSG+ RIL+ M R +T Y ++ Sbjct: 61 MRFRFTSPHPKDYPDELLYLMRDRHNICNLIHLPAQSGNSRILEQMRRGYTREAYLDLVK 120 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NML 379 +IRS+ PD+AI+SDFI GF GET+++ + T+ LV +GY A+ F YS R T N Sbjct: 121 KIRSIIPDVAITSDFITGFCGETEEEHQETLSLVRAVGYDMAYMFAYSMREKTHAHRNYT 180 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQS 437 + V E VK RL L RE D+ VG VL+E K + +L+G++ Sbjct: 181 DDVPEEVKQRRLTELIDAFRETTGPCYDSQVGSTQLVLVEGPNKRAPETELIGKTDKGHR 240 Query: 438 VVLNSK----------------NHNIGDIIKVRITDVKISTLYGELVV 469 V +K N IGD ++V+I ++L+GE + Sbjct: 241 VSFVTKPLFDKACLLDGDDLKRNPGIGDFVEVQIEKSTRASLFGEALA 288 >gi|157415679|ref|YP_001482935.1| MiaB-like tRNA modifying protein [Campylobacter jejuni subsp. jejuni 81116] gi|238065317|sp|A8FNC1|RIMO_CAMJ8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|157386643|gb|ABV52958.1| hypothetical protein C8J_1360 [Campylobacter jejuni subsp. jejuni 81116] Length = 439 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 103/371 (27%), Positives = 184/371 (49%), Gaps = 21/371 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ S GC N+ DS M YE + AD++++NTC + A ++ + Sbjct: 3 KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y R+ E++ + Sbjct: 58 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ Y + +R I+ G + AF+ I EGC++ C+FC +P +G SR Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +S ++ E + L+ G + + + Q+ +++ GEK L+ + +IKG+ R Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P S+ LIK ++ + Y +P+Q SD +LK M R + +++++ ++S Sbjct: 224 LYLYPTSASEALIKRIIASEIFINYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ + + FIVG PGE++ DF + V G+ + F YS T +M EQV Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFDM-EQVPFK 341 Query: 386 VKAERLLCLQK 396 V +RL ++K Sbjct: 342 VINKRLKIIEK 352 >gi|324507132|gb|ADY43031.1| CDKAL1-like protein [Ascaris suum] Length = 535 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 114/423 (26%), Positives = 206/423 (48%), Gaps = 34/423 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + FV+++GC N DS M + GY +++ ++A L VLN+C ++ + ++ Sbjct: 48 ETIFVRTWGCSHNTSDSEYMTGLLSMAGYNIISTKENASLWVLNSCTVKTPSEDQ----- 102 Query: 85 GRIRNLKNSRIKEGGDL-LVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPELLER 142 L+N K +VVAGCV+QA+ E LR +V V + R+ E++E Sbjct: 103 -----LENEVKKAKEAKKFIVVAGCVSQADPNAEFLRGVSLVGV----KQIDRIVEVVEE 153 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V S + ++LS+ R+ + L + GC CT+C RG Sbjct: 154 TLKGNCV--RLLSRKRPEQKLSLPK---MRRNNLIEVLAVSSGCLNNCTYCKTKQARGDL 208 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI--KG 259 +S ++V++A + G EI L +++ AW R G+ DLL ++ ++ +G Sbjct: 209 VSYPPEELVEQAVRAFSEGCREIWLTSEDLGAWGRDFGM-----VLPDLLKAMVDVIPEG 263 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 + +R ++P + D L + L+ + +LH+PVQSGSD +L+ MNR +++ ++ + Sbjct: 264 CM-MRLGMTNPPYILDFLDEIAEILNHPRVYSFLHIPVQSGSDAVLRDMNREYSSADFCR 322 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++D + P++ I++DFI FP ET +DF +M LV + + F ++ PR GTP + Sbjct: 323 VVDFMLQNVPNVYIATDFICAFPTETIEDFEESMQLVHRYRFPSVFINQFYPRKGTPAAR 382 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 L+++ R + R ND +G +VL+ + +K V + + Sbjct: 383 -LKKITTTEARRRTAAMSSLFRSYTRYGNDR-LGMEYDVLVCEWATDKVHFVAHNKCYEH 440 Query: 438 VVL 440 +L Sbjct: 441 FLL 443 >gi|288802186|ref|ZP_06407626.1| 2-methylthioadenine synthetase [Prevotella melaninogenica D18] gi|288335153|gb|EFC73588.1| 2-methylthioadenine synthetase [Prevotella melaninogenica D18] Length = 433 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 127/452 (28%), Positives = 208/452 (46%), Gaps = 43/452 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK-VYSFLGRI 87 + GC N+ DS + F G+ + ++ V+NTC E A E+ + + L I Sbjct: 10 TMGCSKNLVDSELIMKQFEENGFHCTHDSKRPQGEIAVINTCGFIEAAKEESINTILEFI 69 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 KN ++ + + V GC++Q +E+ P V+ G Y +L L +A Sbjct: 70 NRKKNGQLNK-----LYVMGCLSQRYKDELEAELPEVDKFYGKFNYKQLLTDLGKA---- 120 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D + L+ A++ I EGCD+ C +C +P G SRS+ Sbjct: 121 -----DVPACNGVRHLTTPRH--------YAYVKIAEGCDRHCAYCAIPLITGRHHSRSV 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +++DE R L+ GV E ++ Q + + G LDG K ++L+ +++I+G+ +R Sbjct: 168 EEILDEVRGLVAQGVKEFQIIEQELTYY-GVDLDG-KHHITELISRMADIEGVEWIRLHY 225 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P L+ + + YL + Q SD +L M R + E +I IR P Sbjct: 226 AYPNQFPLDLLDVIAEKPNVCKYLDIAFQHISDHMLNRMRRHVSKQETLDLIAEIRRRVP 285 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENV 386 I + + +VGFPGE+D+DF + V + + +F YS GT +N + V E+V Sbjct: 286 GIHLRTTLLVGFPGESDEDFEELKEFVTNARFERMGAFSYSEEEGTYSANHYKDDVPEDV 345 Query: 387 KAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVV 439 K R L+ +Q+ + E+ VG+ +V+I++ KE VGR SP + V Sbjct: 346 KQARLDELMAIQQGISEE---LEAEKVGKTFKVIIDR--KEGEYYVGRTEFCSPEVDPEV 400 Query: 440 LNS---KNHNIGDIIKVRITDVKISTLYGELV 468 L S K IG V ITD L+GE+V Sbjct: 401 LISSAEKPLRIGKFYDVCITDSDEFDLFGEVV 432 >gi|167533429|ref|XP_001748394.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773206|gb|EDQ86849.1| predicted protein [Monosiga brevicollis MX1] Length = 466 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 111/440 (25%), Positives = 204/440 (46%), Gaps = 46/440 (10%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 F++++GC N D M + + GY + + ADL +LN+C ++ + + +F I Sbjct: 53 FLRTWGCSHNNSDGEYMAGLLSAAGYTISDKREGADLWILNSCTVKTPSED---TFNNEI 109 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY--RLPELLERARF 145 R+ ++ I VV+AGCV PQT R+ E++E Sbjct: 110 RDARSRNIP------VVLAGCV--------------------PQTMQIDRVVEVVEETLQ 143 Query: 146 GKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ V + V+ + + +D R+ + + I GC CT+C + RG S Sbjct: 144 GRTVRLLGSKKVDGRKTGGTALDLPKIRRNPLIEIIPINTGCLNKCTYCKTKHARGDLGS 203 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL- 263 ++ ++V +++I GV EI L ++ A+ G+ ++ + ++ +VRL Sbjct: 204 YTIQEIVQRVQQVIAEGVVEIWLTSEDTGAY-GRDINTSIPELLRAILAVVPAGVMVRLG 262 Query: 264 ----RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 Y H + +++CL + ++H+P+QSG++ IL +M R +T ++ + Sbjct: 263 MTNPPYIVEHVQAIAECLRHPR-----MYKFIHIPIQSGANPILHAMQREYTREDFCFVA 317 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 D + P + I++D I GFPGETD DF T ++V + + F+ ++ PR GTP + M Sbjct: 318 DTLLEQVPALTIATDIICGFPGETDADFEDTFEIVRRYHFPSLFTNQFFPRPGTPAAAM- 376 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 E+VD + +R L R +V D + VL+ + V + V+ Sbjct: 377 ERVDPRLVKQRTKELSDYFRGYRVY--DDQLDSYQRVLVTDTATDNVHFVAHNRSFDQVL 434 Query: 440 LNSKNHNIGDIIKVRITDVK 459 + + +G +I V+IT+V Sbjct: 435 VPANPDFMGKLIVVKITNVN 454 >gi|283955058|ref|ZP_06372561.1| LOW QUALITY PROTEIN: MiaB-like tRNA modifying enzyme YliG [Campylobacter jejuni subsp. jejuni 414] gi|283793425|gb|EFC32191.1| LOW QUALITY PROTEIN: MiaB-like tRNA modifying enzyme YliG [Campylobacter jejuni subsp. jejuni 414] Length = 416 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 104/375 (27%), Positives = 186/375 (49%), Gaps = 21/375 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ S GC N+ DS M YE + AD++++NTC + A ++ + Sbjct: 3 KLYLVSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y R+ E++ + Sbjct: 58 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ Y + +R I+ G + AF+ I EGC++ C+FC +P +G SR Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +S ++ E + L+ G + + + Q+ +++ GEK L+ + +I+G+ R Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIQGIRAARI 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P S+ LIK ++ + Y +P+Q SD +LK M R + ++I++ ++S Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEILNLMKSA 283 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ + + FIVG PGE++ DF + V G+ + F YS T +M EQV Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVPFK 341 Query: 386 VKAERLLCLQKKLRE 400 V +RL ++K + E Sbjct: 342 VINKRLKIIEKIVDE 356 >gi|262381912|ref|ZP_06075050.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 2_1_33B] gi|262297089|gb|EEY85019.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 2_1_33B] Length = 432 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 121/449 (26%), Positives = 216/449 (48%), Gaps = 38/449 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ F + GY E + +++V+NTC A E+ + + + Sbjct: 10 TLGCSKNLVDSEQLMRQFVANGYTVEHDPHKINGEIVVVNTCGFIGDAQEESINMILELG 69 Query: 89 NLKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 K RI G L V+ GC+++ +++ + P V+ G + EL+ + GK Sbjct: 70 EQKQKGRI---GKLFVM--GCLSERFLKDLEKELPEVDRFYGK---FNWKELI--SDLGK 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER+ Y A++ I EGC++ C++C +P G SR + Sbjct: 120 -----SYHQELATERVLTTPRHY-------AYVKIGEGCNRTCSYCSIPIITGAYQSRPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRYT 266 ++VDE R L+ GV E ++ Q++ + GLD K +L+ +S+I G+ +R Sbjct: 168 DEIVDEVRGLVAQGVKEFQMIAQDLTFY---GLDRYKRMALPELVERVSDIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P L+ + D + Y+ + +Q SD +LK M R T E ++++R+R Sbjct: 225 YGYPSHFPYDLLPVMRERDNVCKYMDIALQHISDPMLKMMRRNITKAETNELLERMRREV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDEN 385 P I + + +VG PGET+ DF + V I + + +F YS GT + +++ + Sbjct: 285 PGIHLRTTLMVGHPGETEHDFEELIRFVKDIRFERMGAFAYSHEEGTYAYQHYKDEIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441 VK +RL L + N + VGQ V++++ +E+ VGR SP + +L Sbjct: 345 VKQDRLDYLMRVQEGISADVNASKVGQTFRVIVDR--EEEDFYVGRTQYDSPEVDPEILI 402 Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468 SK+ + G +V++ D + LYG+++ Sbjct: 403 SKDTPLSPGSFYQVKVIDAQAFDLYGKVL 431 >gi|296274392|ref|YP_003657023.1| MiaB-like tRNA modifying protein YliG [Arcobacter nitrofigilis DSM 7299] gi|296098566|gb|ADG94516.1| MiaB-like tRNA modifying enzyme YliG [Arcobacter nitrofigilis DSM 7299] Length = 446 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 112/443 (25%), Positives = 214/443 (48%), Gaps = 29/443 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + Y N+ + +D+I++NTC + A E+ + I NL Sbjct: 16 SLGCTKNLVDSEIMLGKL--KDYAISNNAETSDVIIVNTCGFIDSAKEES---INTILNL 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 R K D ++V+AGC+++ EE+ + P +++ G Y ++ L+ R G Sbjct: 71 HEQRKK---DSVLVMAGCLSERYKEELQKELPEIDIFTGVGDYDKIDTLVNEKRSG--FT 125 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + + + + +R+ I Y+ A++ + EGC++ C+FC +P +G SR+L + Sbjct: 126 NEVFLLNETNDRV-ITGSNYH------AYIKLSEGCNQVCSFCAIPSFKGKLHSRTLESL 178 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 V E + L+ G + + + Q+ +++ R + DG L+ + +I+G+ R Sbjct: 179 VKEVKNLVAQGFYDFSFVSQDSSSFLRDLNINDG----LERLVNEVEKIEGIKSARILYL 234 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P + LIK V Y +P+Q S ++LK M R + ++++ +R+ P+ Sbjct: 235 YPSTTTLSLIKKIEQSKVFENYFDMPLQHISSKVLKIMKRGKGVEKLKELMSAMRNT-PN 293 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + + FI G PGET +DF V++ G+ +A F YS GT + +VD+ Sbjct: 294 SFVRTTFIAGHPGETQEDFEELCSYVEEYGFDRANVFSYSDEDGTTAYELDGKVDQETID 353 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR-----SPWLQSVVLNSK 443 +R L + ++ + + + +GQI++V I+ +E L+ +P + + + Sbjct: 354 KRAEILGEIIQRKTLESLEKEIGQIVDVYIDGESEEHEYLLSARKTIWAPEIDGEIYIND 413 Query: 444 NHNIGDIIKVRITDVKISTLYGE 466 N ++ + VKIS L G+ Sbjct: 414 NETGKELTVGKSYQVKISELAGD 436 >gi|189461331|ref|ZP_03010116.1| hypothetical protein BACCOP_01981 [Bacteroides coprocola DSM 17136] gi|189431860|gb|EDV00845.1| hypothetical protein BACCOP_01981 [Bacteroides coprocola DSM 17136] Length = 432 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 121/450 (26%), Positives = 212/450 (47%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ + GY+ + ++ ++ V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEKLMKQLEANGYKVTHDSENPQGEIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ + KE G L + V GC+++ +E+ P V+ G + ELL A GK Sbjct: 66 -LEFCQAKEEGRLKKLYVMGCLSERYLKELQVEIPQVDKFYGK---FNWNELL--ADLGK 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 +D+++E R Y A+L I EGCD+ C++C +P G +SR + Sbjct: 120 -TYHSDFAIE----RHLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGKHVSRPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE R L+ GV E ++ Q + + G+D +K +L+ ++EI G+ +R Sbjct: 168 EEILDEVRLLVSEGVKEFQVIAQELTYY---GVDLYKKQMLPELIERMAEIPGVKWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + D + Y+ + +Q SD +L M R T E Q+I+ R Sbjct: 225 YAYPAHFPKELFRVMREHDNVCKYMDIALQHISDNMLSKMRRHVTKEETYQLIEEFRKEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385 P I + + +VG PGETD DF + V K + + +F YS GT + + + ++ Sbjct: 285 PGIHLRTTLMVGHPGETDQDFEELKEFVRKARFDRMGAFAYSEEEGTYSAKHYKDDIPQD 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440 VK +RL L + +E + +G+ +V+I++ KE +GR SP + VL Sbjct: 345 VKQKRLDELMEIQQEISNELSHNKIGKEFKVIIDR--KEGDYYIGRTEFDSPEVDPEVLI 402 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468 + G +V++ D LY LV Sbjct: 403 KDEGRMLRTGSFHQVKVYDADDFDLYATLV 432 >gi|222628903|gb|EEE61035.1| hypothetical protein OsJ_14875 [Oryza sativa Japonica Group] Length = 613 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 117/441 (26%), Positives = 202/441 (45%), Gaps = 44/441 (9%) Query: 40 DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99 DS M + GY + ADL ++NTC ++ + + + + + ++ Sbjct: 60 DSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKSANKP------ 113 Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK 159 +VVAGCV Q G L+ ++V+ G Q R+ E++E G V Sbjct: 114 ---LVVAGCVPQ--GSRDLKELEGISVI-GVQQIDRVVEVVEETLKGHEVRLLSR----- 162 Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219 + L +D RK L I GC CT+C + RG S ++ +VD + ++ Sbjct: 163 -KTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVVS 221 Query: 220 NGVCEITLLGQNVNAW-RGKG------LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 GV EI L ++ A+ R G L+G ++ I G+ + H ++ Sbjct: 222 EGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRI-GMTNPPFILEHLKE 280 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 ++ L + +LH+PVQSGSD +L +MNR +T E+R+++D + + P + I+ Sbjct: 281 IASVLCHP-----CVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIA 335 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 +D I GFPGETD+DF T++LV + + Q ++ PR GTP + M + VK Sbjct: 336 TDIICGFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAARMKKVPSVEVK----- 390 Query: 393 CLQKKLREQQVSFND-----ACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI 447 K+ RE F G++ + I + + LVG + V++ + + + Sbjct: 391 ---KRSRELTSVFESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSML 447 Query: 448 GDIIKVRITDVKISTLYGELV 468 G V+IT V +++GE++ Sbjct: 448 GTSADVKITSVGRWSVFGEVI 468 >gi|317010566|gb|ADU84313.1| hypothetical protein HPSA_01445 [Helicobacter pylori SouthAfrica7] Length = 418 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 106/385 (27%), Positives = 190/385 (49%), Gaps = 34/385 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E ++AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----NEADIIIINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260 S +++++ L + GV E+ L G NV ++ + KG + L+ LS+I GL Sbjct: 160 ARSFEERKILEQVSLLCNKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQIAGL 214 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++++ Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRIKSDRELLE 273 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 +I S + AI +DFIVG PGE++ F + ++ + F YS R TP S M + Sbjct: 274 KIAS--KNFAIGTDFIVGHPGESESVFEKAFENLEGLPLTHIHPFIYSKRKDTPSSLMHD 331 Query: 381 QVDENVKAERLLCLQKKLREQQVSF 405 V V +RL ++ + + +F Sbjct: 332 SVSLEVSKKRLNAIKDLIFHKNKAF 356 >gi|303325954|ref|ZP_07356397.1| MiaB tRNA modifying enzyme-like protein [Desulfovibrio sp. 3_1_syn3] gi|302863870|gb|EFL86801.1| MiaB tRNA modifying enzyme-like protein [Desulfovibrio sp. 3_1_syn3] Length = 442 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 130/429 (30%), Positives = 199/429 (46%), Gaps = 38/429 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87 S GC N DS E + S G + V M A L+ +NTC I E V + L + Sbjct: 16 SLGCPKNRVDS---ERLLGSLGLPVKSVAQMGRARLVFINTCGFIAPAVRESVRAVLDAV 72 Query: 88 RNLKNSRIKEGGDLLVVVAGC-VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 L + K L+ VAGC V + EE+ R P V++ + P +L RA Sbjct: 73 NRLARCKNKP----LLAVAGCMVGRYGAEELARELPEVDLWLPTGDLADWPAMLARALGL 128 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVT-AFLTIQEGCDKFCTFCVVPYTRGIEISR 205 R+ + S GG G + A+L I EGC C FC +P RG S Sbjct: 129 PRLPEGPGS------------GGRLLSTGPSYAWLKIGEGCRHNCAFCTIPSIRGGLRSE 176 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +S ++ EAR L++ GV E+ L+ Q+V AW G GEK + LL L + GL LR Sbjct: 177 PVSDLLAEARGLLEQGVRELVLVAQDVTAWGGD--LGEKKSLLHLLEGLLGLDGLAWLRL 234 Query: 266 TTSHPRDMSDCLIK-AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P ++ L++ L+PYL +P+Q +L M R A + R+++DR+R Sbjct: 235 LYLYPSGVTPELLRFMRESGGPLLPYLDIPLQHAHPEVLARMGRPF-AGDPRRVLDRVRD 293 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+ A+ + FIVG+PGE++ F + V++ + F Y GT + + +QV E Sbjct: 294 ALPEAAVRTTFIVGYPGESEAHFDSLCRFVEESRFQNMGVFAYQAEEGTKAAGLPDQVPE 353 Query: 385 NVKAERLLCLQKKLREQQVSFNDAC----VGQIIEVLIE-KHGKEKGKLVGRSPWLQSVV 439 ++ R + L E Q +++ VGQ + VL++ H + G GR W QS Sbjct: 354 EIRERR----RATLMEIQAGISESLLAERVGQRLPVLVDAPHPEWPGLHSGRV-WFQSPE 408 Query: 440 LNSKNHNIG 448 ++ + G Sbjct: 409 VDGMTYVSG 417 >gi|255013882|ref|ZP_05286008.1| putative Fe-S oxidoreductase [Bacteroides sp. 2_1_7] gi|256839776|ref|ZP_05545285.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13] gi|298375535|ref|ZP_06985492.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_19] gi|301310445|ref|ZP_07216384.1| 2-methylthioadenine synthetase [Bacteroides sp. 20_3] gi|256738706|gb|EEU52031.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Parabacteroides sp. D13] gi|298268035|gb|EFI09691.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_19] gi|300832019|gb|EFK62650.1| 2-methylthioadenine synthetase [Bacteroides sp. 20_3] Length = 432 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 121/449 (26%), Positives = 216/449 (48%), Gaps = 38/449 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ F + GY E + +++V+NTC A E+ + + + Sbjct: 10 TLGCSKNLVDSEQLMRQFVANGYTVEHDPHKINGEIVVVNTCGFIGDAQEESINMILELG 69 Query: 89 NLKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 K RI G L V+ GC+++ +++ + P V+ G + EL+ + GK Sbjct: 70 EQKQKGRI---GKLFVM--GCLSERFLKDLEKELPEVDRFYGK---FNWKELI--SDLGK 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER+ Y A++ I EGC++ C++C +P G SR + Sbjct: 120 -----SYHQELATERVLTTPRHY-------AYVKIGEGCNRTCSYCSIPIITGAYQSRPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRYT 266 ++VDE R L+ GV E ++ Q++ + GLD K +L+ +S+I G+ +R Sbjct: 168 DEIVDEVRGLVAQGVKEFQMIAQDLTFY---GLDRYKRMALPELVERVSDIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P L+ + D + Y+ + +Q SD +LK M R T E ++++R+R Sbjct: 225 YGYPSHFPYDLLPVMRERDNVCKYMDIALQHISDPMLKMMRRNITKAETYELLERMRREV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDEN 385 P I + + +VG PGET+ DF + V I + + +F YS GT + +++ + Sbjct: 285 PGIHLRTTLMVGHPGETEQDFEELIRFVKDIRFERMGAFAYSHEEGTYAYQHYKDEIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441 VK +RL L + N + VGQ V++++ +E+ VGR SP + +L Sbjct: 345 VKQDRLDYLMRVQEGISADVNASKVGQTFRVIVDR--EEEDFYVGRTQYDSPEVDPEILI 402 Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468 SK+ + G +V++ D + LYG+++ Sbjct: 403 SKDTPLSPGSFYQVKVIDAQAFDLYGKVL 431 >gi|114771178|ref|ZP_01448598.1| RNA modification enzyme, MiaB-family protein [alpha proteobacterium HTCC2255] gi|114548103|gb|EAU50990.1| RNA modification enzyme, MiaB-family protein [alpha proteobacterium HTCC2255] Length = 460 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 116/451 (25%), Positives = 203/451 (45%), Gaps = 37/451 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY +AD +++NTC + A + +G + Sbjct: 33 SLGCPKALVDSERILTRLRAEGYAISPEYTNADAVIVNTCGFLDSAKLESLEAIGEALS- 91 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ E + I + P V V GP Y ++ + + +A Sbjct: 92 ENGR--------VIVTGCLG-VEEDYIRKNHPSVLAVTGPHQYEQVLDAVHKAVPPS--- 139 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L G R + +L I EGC+ C FC++P RG +SR + Sbjct: 140 ------PDPFIDLLPASGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGKLMSRPAHAI 192 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVRL 263 + EA KL+D+GV E+ ++ Q+ +A+ GLD + +DL L + +RL Sbjct: 193 IREAEKLVDSGVKELLVISQDTSAY---GLDIKHNTAHDHRAHITDLTRDLGTLGAWIRL 249 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y +P + + A ++L PYL +P Q +LK M R + I R Sbjct: 250 HYVYPYPHVRNLIPLMADPSNNIL-PYLDIPFQHSHPDVLKRMARPAKSSNTLSEIAAWR 308 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PDI + S FIVG+PGET+ +F +D +D+ + F+Y G + + ++ Sbjct: 309 DNCPDITLRSTFIVGYPGETETEFEHLLDWLDEAQLDRVGCFQYENVDGARSNVLKNHIE 368 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVGRSPWLQSVVL 440 +VK +R +K + + VG ++V+ I++ G + +P + + Sbjct: 369 PDVKQDRWERFMEKSQAISETKLAKKVGLNLDVIVDNIDEDGVATCRTKADAPEIDGNLF 428 Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELV 468 N+ +G II+V++ + L+G+++ Sbjct: 429 IDENTDKIKVGQIIQVKVDEASEYDLWGQII 459 >gi|332884205|gb|EGK04473.1| ribosomal protein S12 methylthiotransferase rimO [Dysgonomonas mossii DSM 22836] Length = 431 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 116/454 (25%), Positives = 208/454 (45%), Gaps = 36/454 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82 R V + GC N+ DS + + GY + D + ++ V+NTC A E+ + Sbjct: 4 NRIDVITLGCSKNLVDSELLMKQLLANGYTVKHDPDKPEGEIAVINTCGFIGDAKEESIN 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + K +R + V GC+ + +E+ P V+ G + L L + Sbjct: 64 MILEFAEAKKARKLSK----LFVMGCLTERYMDELKAEIPEVDNFYGKFNWKMLISDLGK 119 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + F + + ER Y A+L I EGC++ C++C +P G Sbjct: 120 S-FKQDIA---------LERSITTPKHY-------AYLKISEGCNRTCSYCSIPIMTGKH 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLV 261 SR + ++ +E R L+ GV E ++ Q+++ + G D K +L+ +++I+G+ Sbjct: 163 QSRPIEEIEEEVRNLVAVGVKEFQVIAQDLSFY---GYDNYKQAKLPELIERIAKIEGVK 219 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R ++P + L++ + D + YL + +Q SD +L M R + ++ R Sbjct: 220 WIRLHYAYPANFPYDLLRVMRENDNVCKYLDIALQHVSDNMLTKMRRNISKQATYDLMKR 279 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLE 380 IR P I + + +VG PGET DF + V+ + + + +F YS GT N + Sbjct: 280 IREEVPGIHLRTTLMVGHPGETKKDFEELLQFVNDMRFERMGAFPYSHEDGTYAYDNYKD 339 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQ 436 + + K ER+ L + N+ +G+ ++V+++K +E +GR SP + Sbjct: 340 SISDATKQERMDLLMSAQEKIAFETNEEKIGKTLKVVVDK--EESDYYIGRTEYDSPEVD 397 Query: 437 SVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468 VL KN NIG+ V+ITD + LYGE++ Sbjct: 398 PEVLIKKNKMLNIGEFYNVKITDTQSFDLYGEVI 431 >gi|239815572|ref|YP_002944482.1| ribosomal protein S12 methylthiotransferase [Variovorax paradoxus S110] gi|239802149|gb|ACS19216.1| MiaB-like tRNA modifying enzyme YliG [Variovorax paradoxus S110] Length = 468 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 127/480 (26%), Positives = 212/480 (44%), Gaps = 86/480 (17%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS + ++GY+ + + ADL+++NTC + A ++ Sbjct: 15 APKVGFV-SLGCPKALTDSELILTQLSAEGYQTAKTFEGADLVIVNTCGFIDDAVKESLD 73 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPE 138 +G +N R V+V GC+ G++ + + P V V GP Sbjct: 74 TIGEALA-ENGR--------VIVTGCLGAKTGDQGGNLVRQMHPSVLAVTGPHAT----- 119 Query: 139 LLERARFGKRVVDTDYS----VEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 + V+D ++ D F L + G A+L I EGC+ CT Sbjct: 120 --------QEVMDAVHANLPKPHDPFVDLVPNTFGIAGLKLTPRHYAYLKISEGCNHRCT 171 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGL 240 FC++P RG +SR + V+ EA+ L + GV E+ ++ Q+ +A W GK + Sbjct: 172 FCIIPSMRGDLVSRPVGDVLGEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPV 231 Query: 241 DGEKCTFSDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 K +L+ +L EI VRL Y +P + A G + +PYL +P+Q Sbjct: 232 ---KTRMLELVRTLGEIAEPYGAWVRLHYVYPYPSVDEIIPLMASGQV---LPYLDVPLQ 285 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 +LK M R + + + + R R V P++ I S FI GFPGET+ +F +D + + Sbjct: 286 HSHPDVLKRMKRPASGEKNLERLARWREVCPELVIRSTFIAGFPGETEQEFEHLLDFIRE 345 Query: 357 IGYAQAFSFKYSPRLGTPGSN---MLEQVDENVKAERLLCLQK-----KLREQQVSFNDA 408 +A F YSP G ++ ML + + R + + + KLR++ Sbjct: 346 AQIDRAGCFAYSPVAGATANDIPGMLPPAEREARRARFMEVAEAVSIAKLRQR------- 398 Query: 409 CVGQIIEVLIEKH---GKEKGKLVGRS----PWLQSVVL------NSKNHNIGDIIKVRI 455 +G ++VL++ G++ G VGR+ P + V SK +G+ + RI Sbjct: 399 -IGATMQVLVDSAPGMGRKGG--VGRTYADAPEIDGTVRLLPPEKISKTLKVGEFTRARI 455 >gi|254477031|ref|ZP_05090417.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Ruegeria sp. R11] gi|214031274|gb|EEB72109.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Ruegeria sp. R11] Length = 473 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 127/462 (27%), Positives = 206/462 (44%), Gaps = 57/462 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 38 SLGCPKALVDSERILTRLRAEGYGVSPDYSGADAVIVNTCGFLDSAKAESLEAIGEA--- 94 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ AE + I P + V GP Y ++V+ Sbjct: 95 ----LKENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQY-------------EQVL 134 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D ++ + + L G R + +L I EGC+ C FC++P RG SR Sbjct: 135 DAVHAAVPPSPNPYVDLLPAAGVKLTPRHFS-YLKISEGCNHKCKFCIIPDMRGKLASRP 193 Query: 207 LSQVVDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGE-KCTFSDLLYSL 254 V+ EA KL+D GV E+ ++ Q+ VN W+ DGE + DL L Sbjct: 194 AHAVLREAEKLVDAGVRELLVISQDTSAYGLDRKYDVNPWK----DGEVRSHIQDLSREL 249 Query: 255 SEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRR 309 ++ VRL Y +P LI D D L+PYL +P Q +L+ M R Sbjct: 250 GKLAPADELWVRLHYVYPYPHVRE--LIPLMADPDNALLPYLDIPFQHAHPDVLRRMARP 307 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 A + I+ R+ PDI + S FIVG+PGET+ +F+ +D +D+ + FKY Sbjct: 308 AAAAKTLDEINAWRATCPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYEN 367 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKG 426 G +++ + V E VK ER +K + + +A VGQ ++V+ I++ G Sbjct: 368 VDGARSNDLPDHVPEEVKQERWERFMEKAQAISEAKLEAKVGQTMQVIVDDIDEDGIATC 427 Query: 427 KLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465 + +P + + ++ +GD++ V + + L+G Sbjct: 428 RTKADAPEIDGNLFIDEGTEGLQVGDLVAVEVDEAGEYDLWG 469 >gi|307748320|gb|ADN91590.1| Ribosomal protein S12 methylthiotransferase rimO [Campylobacter jejuni subsp. jejuni M1] gi|315930962|gb|EFV09937.1| RNA modification enzyme, MiaB family protein [Campylobacter jejuni subsp. jejuni 327] Length = 439 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 104/371 (28%), Positives = 183/371 (49%), Gaps = 21/371 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ S GC N+ DS M YE + AD++++NTC + A ++ + Sbjct: 3 KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y R+ E++ + Sbjct: 58 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ Y + +R I+ G + AF+ I EGC++ C+FC +P +G SR Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +S +V E + L+ G + + + Q+ +++ GEK L+ + +IKG+ R Sbjct: 166 EISSIVAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P S+ LIK ++ + Y +P+Q SD +LK M R +++++ ++S Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANNTRLKEMLNLMKSA 283 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ + + FIVG PGE++ DF + V G+ + F YS T +M EQV Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFDM-EQVPFK 341 Query: 386 VKAERLLCLQK 396 V +RL ++K Sbjct: 342 VINKRLKIIEK 352 >gi|16081399|ref|NP_393736.1| hypothetical protein Ta0256 [Thermoplasma acidophilum DSM 1728] gi|10639399|emb|CAC11401.1| hypothetical protein [Thermoplasma acidophilum] Length = 401 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 126/453 (27%), Positives = 213/453 (47%), Gaps = 64/453 (14%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + + + YGC +N ++ + S+G V+ D+AD+ ++ TC + +K + + L Sbjct: 2 KIYYEGYGCTLNQGETGLYVNKLLSEGSVLVSRPDEADISIIGTCAVIQKTEDHM---LK 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI L SR+ V V GC++ +G EI N+ E ++R F Sbjct: 59 RIEEL--SRLGR-----VKVIGCLSAIKGSEISGG----NI-----------EAIDRNEF 96 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + ++ E SI+D + + + I +GC C FC+ RG +SR Sbjct: 97 QQ--------FQEYLEDTSIIDAE------IMSGIPINQGCTGKCNFCISHIARGKLVSR 142 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++V++ R ++ G EI + + A+ GK L+ ++ + G LR Sbjct: 143 RPEKIVNQIRMMVAAGKREIRISSLDTAAY-GKDT---GYRLPSLIKDITAVDGDFMLRV 198 Query: 266 TTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 PR ++ D L++A+ D V +LH+PVQSG DR+L +MNR +T E+ QII+ Sbjct: 199 GMMEPRNTIEILDDLLEAYDDPKVF-KFLHIPVQSGDDRVLTAMNREYTVDEFMQIIESF 257 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG------- 375 R PD+ IS+D I+G+ E D F T DL+ K+ ++SPR TP Sbjct: 258 RKRFPDMTISTDVIIGYHAENDRSFDLTCDLIRKVQPEIINVTRFSPRELTPDFEHRPRP 317 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 +N+L+ D + + +K+ ++ S A VG++ +LI + GK G +VGR Sbjct: 318 TNVLKDQDRTMAE-----IHRKIVSERFS---ALVGKVERILITEDGK-PGTMVGRDASY 368 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + VV+ + RI + ++L GELV Sbjct: 369 RPVVIRAPAEKY-TWHSARIIGYENTSLIGELV 400 >gi|87199422|ref|YP_496679.1| MiaB-like tRNA modifying enzyme [Novosphingobium aromaticivorans DSM 12444] gi|87135103|gb|ABD25845.1| MiaB-like tRNA modifying enzyme [Novosphingobium aromaticivorans DSM 12444] Length = 398 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 108/406 (26%), Positives = 174/406 (42%), Gaps = 59/406 (14%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S GC++N+ +S + + D +V+N+C + +A + Sbjct: 5 VISLGCRLNIAESEAIRGLI----------ADGPPTVVVNSCAVTAEAVRQSRRA----- 49 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +E + +VV GC A +ER F Sbjct: 50 --VRRLRRENPEARLVVTGCAAT----------------------------IERDAFAGM 79 Query: 149 V-VDTDYSVEDKFERLS--IVDGG--YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 V VD K E S G R+ AF+ +Q GCD CTFC++P RG + Sbjct: 80 VEVDAVVPNAAKLEPSSWNAPTGARPLPRRAHTRAFIPVQNGCDHSCTFCIIPQGRGKSV 139 Query: 204 SRSLSQVVDEARKLI-------DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 S + V+ + I V E+ L G +V +W G L + + L Sbjct: 140 SLPVVDVISAVERAIFALRPERHLTVHEVVLTGVDVTSW-GADLPSGPALGNLIAAILDA 198 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 L RLR ++ ++ L +MP++HL +QSG D +LK M RRH+ + Sbjct: 199 FPELPRLRLSSLDGVEIDPLLFDLITGEPRVMPHVHLSLQSGDDMVLKRMKRRHSRRDAI 258 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +++ R+++ RPDIA+ +D I GFP ET + R + +V + G F YSPR GTP + Sbjct: 259 ELVQRMKARRPDIAVGADLIAGFPTETPEMHRNNLSIVRECGIVHGHVFPYSPRPGTPAA 318 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 ++ QV+ V ER L+ + ++ + + VG+ +VL E+ G Sbjct: 319 -LMPQVEPAVVRERAAELRAAVATERARWLASLVGKPAQVLAERDG 363 >gi|20090019|ref|NP_616094.1| 2-methylthioadenine synthase [Methanosarcina acetivorans C2A] gi|19914987|gb|AAM04574.1| 2-methylthioadenine synthase [Methanosarcina acetivorans C2A] Length = 435 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 118/451 (26%), Positives = 214/451 (47%), Gaps = 26/451 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN--SMDDADLIVLNTCHIREKAAEKVYSF 83 + +++S+GC ++ + M+ G+E +N + +A++ + N+C ++ +K+ Sbjct: 2 KVYLESFGCSASLASAEIMKASVERLGHELLNPAAAGEAEVYICNSCTVKYTTEQKI--- 58 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--- 140 L +IR++ ++ V+V+GC+ + + EEIL +P +++ G RL ELL Sbjct: 59 LYKIRSMGEKGVQ------VIVSGCMPEVQLEEILHANPEAHIL-GVNAISRLGELLSSI 111 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 E+ R + E L ++ R I +GC+ C++C+V + RG Sbjct: 112 EQRRMEGLPAGGHLELRTS-EPLGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARG 170 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S ++V + R + +G EI L Q+ + + G+D +LL +SEI G Sbjct: 171 KLRSFPPEKIVKDIRSAVADGCREIWLTSQDDSQY---GMD-TGVKLPELLRMISEIPGD 226 Query: 261 VRLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 ++R +P + D L+ A D D + LHLP+QS S +LK MNR H + Sbjct: 227 FKVRVGMMNPFSVLPILDGLVDAF-DSDKVFKLLHLPIQSASHSVLKKMNRLHKMDAVDE 285 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 II + R+ D+++ +D IVGF ETD+DF T++ V K + +YSPR T + Sbjct: 286 IITKFRARFEDLSLFTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFS 345 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 +D + +R L K + ++ +G V + K+ E G ++ R+ + Sbjct: 346 -FRNLDSRISVQRSHELHKVCEQIKLGSKQEMIGWKGRVFVSKY-TEIGDVLTRTDAYRP 403 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV++ + G+ V IT K G ++ Sbjct: 404 VVISGSDLKPGEYANVEITGAKPGYFLGRII 434 >gi|281420874|ref|ZP_06251873.1| 2-methylthioadenine synthetase [Prevotella copri DSM 18205] gi|281405166|gb|EFB35846.1| 2-methylthioadenine synthetase [Prevotella copri DSM 18205] Length = 536 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 120/460 (26%), Positives = 198/460 (43%), Gaps = 53/460 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ M G + AD+ ++NTC + E A K + R+ Sbjct: 80 TLGCKLNFSETSTFGKMLEDMGVITAKRGEKADICLINTCSVTEVADHKCRQAIHRM--- 136 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA---RFGK 147 ++ V+V GC AQ E E + + V++V+G L + L A +F + Sbjct: 137 ----VRNNPGAFVIVTGCYAQLESENVSKIEG-VDLVLGANEKAHLIQYLSNAWAQKFAQ 191 Query: 148 R----------------------VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEG 185 + YSV+ K + +R FL +Q+G Sbjct: 192 ENGLAAQTPQNGDAESSQNGDAASLHQHYSVKTK--EIKTFQPSCSRGNRTRYFLKVQDG 249 Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245 C+ +CT+C +P+ RG + S+ +V + + G EI + G N+ + + Sbjct: 250 CNYYCTYCTIPFARGNSRNPSIQSLVAQCEQAAAEGGKEIVITGVNIGDFGQTTHE---- 305 Query: 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 F DL+ ++ +++G+ R R ++ P D LI+ MP+ H+P+QSGSD +LK Sbjct: 306 RFIDLVKAMDQVEGIKRYRISSLEPDLCDDDLIEYCAQSRAFMPHFHIPLQSGSDEVLKL 365 Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M+RR+ + ++ I+ PD I D +VG GET + F + + + Q F Sbjct: 366 MHRRYDKALFAHKVNLIKEKMPDAFIGVDVMVGCRGETPECFEECYEFLKSLPVTQLHVF 425 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK----- 420 YS R GT + VDE K +R L + ++ F +G EVL EK Sbjct: 426 PYSERPGTAALKIPYVVDEKEKKKRSKRLLELSDQKTQEFYAQYIGTEAEVLFEKAPRGK 485 Query: 421 --HGKEKGKL-VGRSPWLQSVVLNSKNHNIGDIIKVRITD 457 HG K + V SP L +K +IKVR+ D Sbjct: 486 AMHGFTKNYIRVELSPAL------AKEEYDNQLIKVRLGD 519 >gi|289596431|ref|YP_003483127.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469] gi|289534218|gb|ADD08565.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469] Length = 404 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 122/453 (26%), Positives = 215/453 (47%), Gaps = 64/453 (14%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGC N+ ++ +M E V+ ++AD+I++ TC + E ++ L Sbjct: 2 KVYLEAYGCSQNIAET----NMLGQAMGEIVSRPEEADVILIGTCVVIEHTENRM---LR 54 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI LK K +VV GC+ A R ++++ V P + Sbjct: 55 RIEELKRYGKK------IVVYGCLPSA-------RKELLDIDVVPIATWEF-------EM 94 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +++ D S D+ + I D A + I GC CT+C+ RG SR Sbjct: 95 AGEILNLDRSPMDE---VFIWDA--------VATIPIANGCLGQCTYCITRLARGRVKSR 143 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S ++ +K ++ EI + Q+ A+ G+ + E ++L+ S++ I G LR Sbjct: 144 SKEWILRLVKKALEQRAVEIRISAQDTAAY-GRDIGTE---LAELINSITAIPGKFYLRV 199 Query: 266 TTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 PR+ + LI A+ + V +LHLPVQSG + IL MNR + ++ +I+ Sbjct: 200 GMMEPRETLRILPELIDAYSNPKVYK-FLHLPVQSGDNEILHRMNRGYKVEDFIKIVRNF 258 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG------- 375 R P++ +S+D IVGFPGE D+ F TM L+ +I ++SPR TP Sbjct: 259 RQRFPEMTLSTDIIVGFPGENDESFENTMKLIKEIKPEILNITRFSPRPKTPAYKWKRPS 318 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 +N +++ + + A + + K+ ++ +G+ +V++ GK +GK + RS Sbjct: 319 TNKVKEWSQKLAALHMENMHKRF--------ESMLGKEFKVIVPSRGK-RGKYLARSQNY 369 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + VVL+ N IG +RIT + S L G+++ Sbjct: 370 EPVVLD--NAVIGREYIIRITHYEKSHLVGKIL 400 >gi|315124891|ref|YP_004066895.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018613|gb|ADT66706.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 439 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 104/375 (27%), Positives = 186/375 (49%), Gaps = 21/375 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ S GC N+ DS M YE + AD++++NTC + A ++ + Sbjct: 3 KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y R+ E++ + Sbjct: 58 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKT- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ Y + +R I+ G + AF+ I EGC++ C+FC +P +G SR Sbjct: 114 -NLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGKLKSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +S ++ E + L+ G + + + Q+ +++ GEK L+ + +IKG+ R Sbjct: 166 EISSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P S+ LIK ++ + Y +P+Q SD +LK M R + +++++ ++S Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKST 283 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ + + FIVG PGE++ DF + V G+ + F YS T +M EQV Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAVFDM-EQVPFK 341 Query: 386 VKAERLLCLQKKLRE 400 V +RL ++K + E Sbjct: 342 VINKRLKIIEKIVDE 356 >gi|329939936|ref|ZP_08289218.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoaurantiacus M045] gi|329300762|gb|EGG44658.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoaurantiacus M045] Length = 462 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 112/401 (27%), Positives = 178/401 (44%), Gaps = 37/401 (9%) Query: 50 SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109 + G++ V +DAD+ V+NTC + A + L +LK+ G VV GC+ Sbjct: 3 ADGWQLVEDAEDADVAVVNTCGFVDAAKKDSVDALLEANDLKD----HGRTRAVVAVGCM 58 Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELL--------------------------ERA 143 A+ G+E+ P + V+G Y + + L ER Sbjct: 59 AERYGKELAEALPEADGVLGFDDYADISDRLQTILSGGIHAAHTPRDRRKLLPISPAERQ 118 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYN--RKR---GVTAFLTIQEGCDKFCTFCVVPYT 198 G V + D E L+ G R+R + A + + GCD+ C+FC +P Sbjct: 119 EAGTAVALPGHGPVDLPEGLAPASGPRAPLRRRLGGALVASVKLASGCDRRCSFCAIPSF 178 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG ISR S V++E R L + GV E+ L+ +N N GK L G+ LL L+E+ Sbjct: 179 RGSFISRRPSDVLNETRWLAEQGVKEVMLVSEN-NTSYGKDL-GDIRLLESLLPELAEVD 236 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ R+R + P +M LI + PY L Q + +L++M R + ++ Sbjct: 237 GIERVRVSYLQPAEMRPGLIDVLTSTPKVAPYFDLSFQHSAPGVLRAMRRFGDTDRFLEL 296 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +D IR+ P+ + S+FIVGFPGE++ D ++ F YS GT + Sbjct: 297 LDTIRNKAPEAGVRSNFIVGFPGESEADLAELERFLNGARLDAIGVFGYSDEDGTEAATY 356 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ++D + AERL + + E D +G + VL+E Sbjct: 357 ENKLDADTVAERLDRVSRLAEELVAQRADERLGSTVHVLVE 397 >gi|228470161|ref|ZP_04055070.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] gi|228308299|gb|EEK17154.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] Length = 443 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 122/451 (27%), Positives = 207/451 (45%), Gaps = 36/451 (7%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTC-HIREKAAE 78 ++ + V S GC N+ DS + GY + ++ ++ V+NTC I+ E Sbjct: 1 MIANQIDVISLGCSKNLVDSDALMRRLAQFGYTLRHDPEELTGEIAVVNTCGFIQAAQEE 60 Query: 79 KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE 138 + L I K RI+ V V GC+ + EE+ P V+ + G + +L Sbjct: 61 SINLILSLIEAKKEGRIRS-----VYVMGCLGERFREELTAELPEVDKIYGKYDWKQLIS 115 Query: 139 LLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 L A Y S+ Y +++ I EGCD+ C++C +P Sbjct: 116 DLGPALSADSATPLSYRTPPP----SVTPRHY-------SYIKISEGCDRTCSYCAIPLI 164 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 G SR + ++V E + G E ++ Q+ + + G L E+ + LL L+++ Sbjct: 165 TGRHHSRPMEEIVREVEGRVSAGCREFQIIAQD-STYYGVDLYQEQA-IAPLLDRLAQVN 222 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ LR ++P L+ D + YL L +Q S+ +L+ M R+ T E + Sbjct: 223 GVHWLRLHYAYPNHFPLALLDVMAQHDNICKYLDLALQHSSNHMLQLMRRQITREETVAL 282 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SN 377 ++RIR P IA+ + +VG PGETD+DF +D V ++ + + +F+YS GT + Sbjct: 283 LERIREQVPGIALRTTMMVGHPGETDEDFADLLDFVSQMRFERLGAFQYSHEEGTYAYKH 342 Query: 378 MLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--- 431 + V VK ER L+ LQ + S N VG +EV++++ +E+G VGR Sbjct: 343 YQDDVPPEVKQERYDALMSLQANI---SASVNSRRVGTSLEVIVDR--EEEGYYVGRTQY 397 Query: 432 -SPWLQSVVLNSKNH--NIGDIIKVRITDVK 459 SP + V+ S + ++G + IT V+ Sbjct: 398 DSPEVDGEVILSSDRPLHVGSFYRAEITGVE 428 >gi|222823704|ref|YP_002575278.1| MiaB-like tRNA modifying enzyme [Campylobacter lari RM2100] gi|222538926|gb|ACM64027.1| MiaB-like tRNA modifying enzyme [Campylobacter lari RM2100] Length = 418 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 107/424 (25%), Positives = 209/424 (49%), Gaps = 37/424 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + Q+ + K++GC+ N+YD+ ++ + + +E V + +AD+I++N+C + A + + Sbjct: 1 MKQKVYFKTFGCRTNIYDTQLIKT--YIKDHEIVQNEQEADVIIINSCTVTNGADSGLRT 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-LE 141 ++ NS K G + V++ GC A ++G++ + + V+ G ++ EL + Sbjct: 59 YI-------NSVKKNG--VKVILTGCGAISKGKDFFDKKEVFGVL-GASNKSKINELIMS 108 Query: 142 RARFGKRVVDTDYSVED-KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 + F Y + D KF IV N + AF+ IQEGCD C++C++P RG Sbjct: 109 KKEF--------YEIGDLKFIDTKIVSDYENHTK---AFVKIQEGCDFACSYCIIPSVRG 157 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S +++ + + L NG E+ L G N+ ++ GL +K T LL + +I G+ Sbjct: 158 KSRSIPSDEIIKQIKLLAQNGYSEVVLTGTNIGSY---GLK-DKTTLGKLLQEIGKINGI 213 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + + K D L +LH+ +Q +++L+ M RR + + Sbjct: 214 KRVRLGSLEPAQIDESF-KEILDEPWLERHLHIALQHTHEKMLRIMRRRSHTQNDLALFN 272 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + + A+ +DFIV PGE++ ++ ++ +F +SPR GT ++M E Sbjct: 273 ELS--QKGFALGTDFIVAHPGESELIWQEALENFKHFKLTHIHAFIFSPRDGTHSASMKE 330 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV-GRSPWLQSVV 439 +++ + ERL L+ + + F + +E+L+E +KG+ G + + Sbjct: 331 RINGEIAKERLNILKDIVFQNNYEFRKNHKVK-LEILVE---NKKGEFYEGYDQFFNKIK 386 Query: 440 LNSK 443 ++SK Sbjct: 387 ISSK 390 >gi|118576134|ref|YP_875877.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A] gi|118194655|gb|ABK77573.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A] Length = 421 Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 129/448 (28%), Positives = 211/448 (47%), Gaps = 37/448 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++++YGC + DS + + + G+ S +++D V+ TC +++ A ++ Sbjct: 3 RIWIEAYGCSASQADSEMISGLLVNGGHTLAASPEESDAGVIVTCAVKDATANRMVH--- 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIK G +VVAGC+ +AE + R SP ++GP + R ++E A Sbjct: 60 --------RIKMLGGRPLVVAGCLPKAEPGTMARISPGA-ALMGPNSIGRTVPVVEAALR 110 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G+R ++ D + + + N G+ + I GC CTFC +G S Sbjct: 111 GERRIELD---DTDLTKTGLPKVRLNEAVGI---VEIASGCLSECTFCQTKLAKGDLGSY 164 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +V + R +D+G E+ L + + G D + LL ++ I G R+R Sbjct: 165 RIGDIVRQVRAEVDDGCSEVWLTSTDNGCY---GFDISE-DLPGLLDAVITIPGRFRVRV 220 Query: 266 TTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +P M + L K+ D L +LH+PVQSGS RIL M R TA + R Sbjct: 221 GMMNPMYMPRIREGLAKSF-QSDKLYRFLHIPVQSGSGRILGEMGRGRTAGIFADAARRF 279 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RS IS+D IVGFPGETD D+ +T L++++ +YS R GT + EQV Sbjct: 280 RSEFGGFTISTDVIVGFPGETDGDYESTEALIEEVRPDTVNLSRYSARPGTEAAGR-EQV 338 Query: 383 D-ENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 D + VK ++R+ L ++ + N VG +VL + +G + GR+ + V Sbjct: 339 DVQTVKRRSKRMYELSCRI---SLDRNKEWVGWKGDVLFSE--ATEGGIRGRNREYKPVY 393 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ +G+ +VRIT L GE+ Sbjct: 394 --AEGAVLGETRQVRITKATNHCLVGEI 419 >gi|317490536|ref|ZP_07949013.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA] gi|316910351|gb|EFV31983.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA] Length = 355 Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 110/377 (29%), Positives = 173/377 (45%), Gaps = 48/377 (12%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 F V + GC++N +S +G E + ADLIV+NTC + +A +K + R Sbjct: 10 FAVVNLGCKVNRVESDDAAARLALRGVETPEA--SADLIVVNTCTVTGEAEKKTRKAVRR 67 Query: 87 -IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +R ++R V+V GC A + V+VV Q + L + A F Sbjct: 68 ALRANDHAR--------VLVTGCAAAIDAAFYEALDERVSVVGKAQLAQAIDALFDEAPF 119 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 D + + G+ + GV +Q+GCD CT+C+V RG SR Sbjct: 120 SP---GEDAPLH--------IGSGFRTRVGVK----VQDGCDNACTYCIVHVARGRATSR 164 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL--------------- 250 VV E G EI L G N+ ++ DG + S + Sbjct: 165 PADDVVRECAAYARAGAREIVLTGINLGSY----CDGGRRDPSAIRLAALLRRLLDETAD 220 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRR 309 L++ E R R ++ PRD+ D L+ D + +LHLP+Q+GS ++L+ M R Sbjct: 221 LHAPGEAPA--RFRVSSIEPRDVDDALVDLLASADGRVCRHLHLPLQAGSSKVLREMARP 278 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + A + +++R+ P +A+S+D I GFPGETD +F+ T+D+ +A+ +F YSP Sbjct: 279 YDAERFVALVERLYRRIPQLALSTDIIAGFPGETDAEFQETLDVARACRFAKIHAFPYSP 338 Query: 370 RLGTPGSNMLEQVDENV 386 R GTP + +QV V Sbjct: 339 RAGTPAAARADQVPPAV 355 >gi|153951469|ref|YP_001398743.1| putative tRNA modifying protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938915|gb|ABS43656.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter jejuni subsp. doylei 269.97] Length = 455 Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 102/371 (27%), Positives = 184/371 (49%), Gaps = 21/371 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ S GC N+ DS M YE + AD++++NTC + A ++ + Sbjct: 19 KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 73 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y R+ E++ + Sbjct: 74 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKK-- 128 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ Y + +R I+ G + AF+ I EGC++ C+FC +P +G SR Sbjct: 129 TNLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGRLKSR 181 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ ++ E + L+ G + + + Q+ +++ GEK L+ + +IKG+ R Sbjct: 182 QINSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 239 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P S+ LIK ++ + Y +P+Q SD +LK M R + +++++ ++S Sbjct: 240 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGTNSTRLKEMLNLMKSA 299 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ + + FIVG PGE++ DF + V G+ + F YS T +M EQV Sbjct: 300 -PNSFLRTGFIVGHPGESEADFEKLCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVPFK 357 Query: 386 VKAERLLCLQK 396 V +RL ++K Sbjct: 358 VINKRLKIIEK 368 >gi|291301726|ref|YP_003513004.1| MiaB-like tRNA modifying enzyme YliG [Stackebrandtia nassauensis DSM 44728] gi|290570946|gb|ADD43911.1| MiaB-like tRNA modifying enzyme YliG [Stackebrandtia nassauensis DSM 44728] Length = 479 Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 115/469 (24%), Positives = 210/469 (44%), Gaps = 47/469 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R V + GC N DS + + G+E + DAD++++NTC E A + L Sbjct: 11 RRVAVVTLGCARNDVDSEELAARLANGGWEVTDDGSDADVVMVNTCGFIETAKQDSIDML 70 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + VV GC+A+ G ++ P + V+G Y + L+ Sbjct: 71 LEASDTGAK---------VVATGCLAERYGTQLADSLPEADAVLGFDHYPDIAARLDAIA 121 Query: 145 FGKRVVD---TD------YSVEDKFERLSIVDGGYN---------------RKR---GVT 177 G+++ TD S + E +++ G R+R G Sbjct: 122 RGEKIASHTPTDRRTLLPISPVKRREATAVIPGHAAPDTDDTAMPAHLKVMRRRLTSGPV 181 Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237 A L I GCD+ C FC +P RG +SR +++ EA+ L + GV E+TL+ +N ++ G Sbjct: 182 ANLKIASGCDRRCAFCAIPSFRGAFVSRDPGEILAEAQWLAEQGVVEVTLVSENTTSY-G 240 Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297 K L + LL L+ + G+ R+R + P ++ L++ + PY L Q Sbjct: 241 KDL-SDAAALEKLLPQLAAVDGIERVRVSYLQPAELRPSLVETIATTPGVAPYFDLSFQH 299 Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 S +L+ M R + + ++++ IR + P + ++ IVGFPGETD D + + Sbjct: 300 SSRDLLRRMRRFGSTEGFLELLETIRGLSPLAGVRTNVIVGFPGETDADAAELERFLSQA 359 Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQII 414 F YS GT +++ VDE+V +R + L +++ Q+ + +G+ + Sbjct: 360 RLDAVGVFSYSDEDGTEAADLDGHVDEDVIVKRHDHISVLAEEVTAQRAAER---IGETV 416 Query: 415 EVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463 V+++ + + GR+ Q+ ++ IG++ +R D+ +T+ Sbjct: 417 SVVVDS--ADDSGVDGRAAH-QAPEVDGSTALIGEVDGLRPGDIVSATV 462 >gi|238065379|sp|A7H5G3|RIMO_CAMJD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO Length = 439 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 102/371 (27%), Positives = 184/371 (49%), Gaps = 21/371 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ S GC N+ DS M YE + AD++++NTC + A ++ + Sbjct: 3 KLYLMSLGCNKNLVDSEIMLGRL--SAYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y R+ E++ + Sbjct: 58 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKK-- 112 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ Y + +R I+ G + AF+ I EGC++ C+FC +P +G SR Sbjct: 113 TNLFSNSTYLQSENSKR--IITGSNSH-----AFIKIAEGCNQKCSFCAIPSFKGRLKSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ ++ E + L+ G + + + Q+ +++ GEK L+ + +IKG+ R Sbjct: 166 QINSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARI 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P S+ LIK ++ + Y +P+Q SD +LK M R + +++++ ++S Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGTNSTRLKEMLNLMKSA 283 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ + + FIVG PGE++ DF + V G+ + F YS T +M EQV Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEKLCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVPFK 341 Query: 386 VKAERLLCLQK 396 V +RL ++K Sbjct: 342 VINKRLKIIEK 352 >gi|294900097|ref|XP_002776898.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC 50983] gi|239884099|gb|EER08714.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC 50983] Length = 554 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 104/448 (23%), Positives = 208/448 (46%), Gaps = 45/448 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ F K++GC N DS M + GY+ V + DAD++VLN+C ++ + + + + + Sbjct: 124 QKIFFKTFGCSHNTSDSEYMMGLLSRYGYDFVGKIADADVVVLNSCTVKNPSEDALATLV 183 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE-ILRRSPIVNVVVGPQTYYRLPELLERA 143 + E L VV GCV QA+ + LR + +V G R+ E++E Sbjct: 184 ---------KAAEAEGLPTVVCGCVPQADRKSRALRNASLV----GTSQIDRIVEVVEET 230 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G RV + L + R+ + + + GC C++C Y RG Sbjct: 231 LRGNRVSLLQSKKLPELRELPKI-----RRNPLVEIVAVNTGCLGKCSYCKTKYARGSLG 285 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------------GEKCTFSDL 250 S S ++ R + GV +I L +++ A+ GLD GE + D Sbjct: 286 SYSKEDIIARVRTALAEGVQQIWLTSEDLGAY---GLDIGTNVAELLREIVGELEKYPDS 342 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 + L G+ Y H +++ L + ++H+P+QSGS+ +L+ M R + Sbjct: 343 MMRL----GMTNPPYILQHAEEVAKILTHPQ-----VFEFIHIPIQSGSNDVLRHMIREY 393 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 T ++ +++ +R+ P++ +++D I GFP E++++ R T++L+ + + ++ R Sbjct: 394 TVEDFDRLVGILRARVPNLTVATDVICGFPTESEENHRETLELIKRHRFPVINISQFYAR 453 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 GT + + ++ V ER + ++ + +G+++EV ++ + +G+ VG Sbjct: 454 PGTAAARIRPRLPGKVIKERSTEVTNLFMSYSLTDSLYDIGEVVEVWYDEVDEGRGQTVG 513 Query: 431 RSP-WLQSVVLNSKNHNIGDIIKVRITD 457 + + ++V+L +G ++ R+ D Sbjct: 514 HTKRYTKAVLLGIHKGVLGKKMRARVED 541 >gi|320451208|ref|YP_004203304.1| hypothetical protein TSC_c21520 [Thermus scotoductus SA-01] gi|320151377|gb|ADW22755.1| conserved hypothetical protein [Thermus scotoductus SA-01] Length = 437 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 124/446 (27%), Positives = 212/446 (47%), Gaps = 36/446 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R ++ GC++N ++ + + E V ADL+V+NTC + A + Sbjct: 5 RAAFRTLGCKVNQVETEALLGFLKALEPEVVPLEAGADLVVINTCAVTTTAEADARKEIR 64 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R R R G +VV GC A+ EE+ R + VV LP+++ F Sbjct: 65 RAR-----RANPGA--FIVVTGCYAELSPEEV--RELGADAVVPNSRKAELPKVILE-HF 114 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G + +D E + G R V AFL +Q+GC C +C++P RG E R Sbjct: 115 G---LPSDPITTPPNEFWGAGERGLLNSR-VRAFLKVQDGCQVGCAYCIIPRLRGKERHR 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLVRL 263 + EA L+ G+ EI L G + ++RG +GL G + LY L ++ Sbjct: 171 DYRDALAEAEALLRMGIKEIVLTGVRLGSYRGHPRGLAG----LVEDLYHLG-----AKV 221 Query: 264 RYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 R ++ P D + L++ + P+LHL +Q+GSDR+L+ M RR+ YR ++ R Sbjct: 222 RLSSIEPEDTGEDLLRVIARYAPGVRPHLHLSLQTGSDRLLRLMGRRYDKAYYRNLVQRA 281 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 + P A+++D I G P ET+++ + T+ ++++ + +F Y+PR T ++M QV Sbjct: 282 YELIPGFALTTDVIAGLPTETEEEHQETLTFLEELRPTRVHAFTYTPRPKTRAASM-PQV 340 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 V+ R ++ L ++L E+++ +G +EVL+E+ + G +G +P Sbjct: 341 PPEVRKRRTKEIIALAQRLAEERIRPK---LGSQVEVLVER--IQGGLALGHTPDYYEAR 395 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYG 465 L S + GD + R+ + TL G Sbjct: 396 L-SGSARPGDTVLARVEGAEGYTLLG 420 >gi|289606980|emb|CBI60926.1| unnamed protein product [Sordaria macrospora] Length = 315 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 99/334 (29%), Positives = 158/334 (47%), Gaps = 37/334 (11%) Query: 62 ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121 AD++++NTC + A E+ +G I E G V+V GC+ Q E E I R Sbjct: 8 ADVVLVNTCGFLDSAKEESLEAIGEA-------IAENGR--VIVTGCMGQ-EAETIRARF 57 Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181 P V V G Y ++ + + A + F L + + G ++L Sbjct: 58 PQVLAVTGAHQYEQVVDAVHEAA---------PPIPSPFVDL-VPESGLKLTPRHYSYLK 107 Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA------- 234 I EGC+ C+FC++P RG +SR ++ EA KL+ G E+ ++ Q+ +A Sbjct: 108 ISEGCNHRCSFCIIPSIRGDLVSRRPDAILREAEKLVAAGTKELLVISQDTSAYGIDIRR 167 Query: 235 ----WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290 W+G+ + +DL L I VRL Y +P S + A G +++PY Sbjct: 168 ESRAWKGREVVPH---MTDLARELGRIAPWVRLHYVYPYPNVDSIIPLMAEG---LVLPY 221 Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350 L +P Q S +LK+M R + + + R V PDIAI S F+VGFPGET+ DF+ Sbjct: 222 LDIPFQHASPNVLKAMKRPANDAKVLERLRGWREVCPDIAIRSSFVVGFPGETEADFQYL 281 Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 +D +D+ + +F++ P G + + + V E Sbjct: 282 LDWLDEAQLDRVGAFRFEPVEGAAANALPDPVPE 315 >gi|145220314|ref|YP_001131023.1| MiaB-like tRNA modifying enzyme [Prosthecochloris vibrioformis DSM 265] gi|145206478|gb|ABP37521.1| MiaB-like tRNA modifying enzyme [Chlorobium phaeovibrioides DSM 265] Length = 451 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 106/354 (29%), Positives = 168/354 (47%), Gaps = 32/354 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL-GRIRN 89 + GC++N ++ + +G+ + DLIV+++C + ++A +K + G +R Sbjct: 13 TLGCKLNYAETASILQSLVERGWRIAGPQEQPDLIVVHSCAVTKQAEQKCRQKIRGLVRR 72 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEG-------EEILRRSPIVNVVVGPQTYYRLPELLER 142 +SR+ G + G +A EG +E S + VV P Sbjct: 73 HPDSRVVVTGCYAQLSPGLIADIEGVDAVLGNDEKFDSSSYMGVVAAPPPA--------- 123 Query: 143 ARFGKRVVDTDYSVEDKF---ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 GK VV S E F R + G +R AFL +Q+GCD C +C +P R Sbjct: 124 ---GKPVVCV--SDEGGFLTAHRACSLPSGSEGER-TRAFLKLQDGCDYGCAYCTIPLAR 177 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G S V+ +A+ L D+G EI L G N +R G G F +LL L +I Sbjct: 178 GRSRSVPPEVVLQQAQMLADSGYREIVLTGVNTGDYR-SGTTG----FLELLRMLEDID- 231 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R+R ++ P ++D L+ ++P+ HLP+Q+GSDRIL +M RR+ +YR+ + Sbjct: 232 VPRIRISSLEPDILTDELVALVAASRTIVPHFHLPLQNGSDRILGAMRRRYRTADYRERL 291 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 D A+ +D +VG+PGE DDDF T+ ++ + A F S R GT Sbjct: 292 LGAVDAIEDCAVGADVMVGYPGENDDDFGDTVRFIEGLPLAYFHVFSCSVRPGT 345 >gi|213609974|ref|ZP_03369800.1| hypothetical protein SentesTyp_05377 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 292 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 96/296 (32%), Positives = 149/296 (50%), Gaps = 25/296 (8%) Query: 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER-L 163 V GC+ E ++I P V + GP +Y ++ + + Y + K L Sbjct: 1 VTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH-----------YVPKPKHNPFL 48 Query: 164 SIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222 S+V + G A+L I EGC+ CTFC++P RG +SR + V+ EA++L+D GV Sbjct: 49 SLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLSEAKRLVDAGV 108 Query: 223 CEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274 EI ++ Q+ +A+ R +GE K + L LS++ RL Y +P Sbjct: 109 KEILVISQDTSAYGVDVKHRTGFHNGEPMKTSMVSLCEQLSKLGVWTRLHYVYPYPHVDD 168 Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334 + A G + +PYL +P+Q S RILK M R + I + R + P++ + S Sbjct: 169 VIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRST 225 Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 FIVGFPGET++DF+ +D + + + FKYSP G + + +QV E VK ER Sbjct: 226 FIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANELPDQVPEEVKEER 281 >gi|119596724|gb|EAW76318.1| CDK5 regulatory subunit associated protein 1, isoform CRA_a [Homo sapiens] Length = 291 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 118/193 (61%), Gaps = 3/193 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV D+ + GY R +++ +AD+I+L TC IREKA + +++ L Sbjct: 100 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 159 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +++ LK R + L + + GC+A+ EEIL R +V+++ GP Y LP LL A Sbjct: 160 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 219 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G++ + S+++ + + V + +AF++I GCD C++C+VP+TRG E S Sbjct: 220 SGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSYCIVPFTRGRERS 276 Query: 205 RSLSQVVDEARKL 217 R ++ +++E +KL Sbjct: 277 RPIASILEEVKKL 289 >gi|57168872|ref|ZP_00368002.1| MiaB-like tRNA modifying enzyme [Campylobacter coli RM2228] gi|305431977|ref|ZP_07401144.1| 2-methylthioadenine synthetase [Campylobacter coli JV20] gi|57019708|gb|EAL56394.1| MiaB-like tRNA modifying enzyme [Campylobacter coli RM2228] gi|304445061|gb|EFM37707.1| 2-methylthioadenine synthetase [Campylobacter coli JV20] Length = 418 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 105/397 (26%), Positives = 194/397 (48%), Gaps = 29/397 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ F K++GC+ N+YD+ ++ + + YE VN + A +IV+N+C + A + S Sbjct: 1 MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIVNDEEKAQIIVVNSCTVTNGADSGIKS 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 ++ NS K+G + V++ GC A ++G+E+L + + V+ G ++ E L Sbjct: 59 YI-------NSMQKKG--VRVILTGCGAVSKGKELLDKKQVFGVL-GASNKDKINEFLGL 108 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + ++ +D IV N + AF+ IQEGCD C++C++P RG Sbjct: 109 KTSFYELGNLNFIDKD------IVCEYENHTK---AFVKIQEGCDFACSYCIIPSVRGKS 159 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S ++ + L NG E+ L G N+ ++ GL T LL + +I G+ R Sbjct: 160 RSVDEQALLRQVEILGANGYSEVVLTGTNIGSY---GLKN-GTTLGKLLQKMGQISGIKR 215 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R + P + + ++ D + +LH+ +Q S+++L+ M RR ++ + I Sbjct: 216 IRLGSLEPAQIDESFLEIL-DERWMERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTI 274 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 S A+ +DFIVG PGET++ + + + +F +SPR T + M + + Sbjct: 275 AS--KGYALGTDFIVGHPGETEELWHEALKHFQEFPLTHIHAFIFSPRNNTHSATMKDTI 332 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 + V ERL L+ + F V +E+L+E Sbjct: 333 NGAVAKERLNTLKVIIENNNYEFRKR-VKTPLEILVE 368 >gi|308184088|ref|YP_003928221.1| hypothetical protein HPSJM_01540 [Helicobacter pylori SJM180] gi|308060008|gb|ADO01904.1| hypothetical protein HPSJM_01540 [Helicobacter pylori SJM180] Length = 418 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 110/392 (28%), Positives = 188/392 (47%), Gaps = 39/392 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+IV+N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIVINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S +++++ L GV E+ L G NV ++ G D E + L+ LS+I GL Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSY---GKDKE-SNIARLIKKLSQITGLK 215 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R+++++ Sbjct: 216 RIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEK 274 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I S + AI +DFIVG PGE++ F ++ + F YS R TP S M + Sbjct: 275 IAS--KNFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMHDS 332 Query: 382 VDENVKAERLLCLQ-------KKLREQQVSFN 406 V +RL ++ K R+ Q+ N Sbjct: 333 VSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLN 364 >gi|34558076|ref|NP_907891.1| 2-methylthioadenine synthetase [Wolinella succinogenes DSM 1740] gi|81637443|sp|Q9ZEN7|RIMO_WOLSU RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|3929906|emb|CAA10332.1| hypothetical protein [Wolinella succinogenes] gi|34483794|emb|CAE10791.1| conserved hypothetical protein-2-methylthioadenine synthetase [Wolinella succinogenes] Length = 439 Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 108/398 (27%), Positives = 204/398 (51%), Gaps = 22/398 (5%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ + S GC N+ DS M S YE ++ AD+I++NTC E A ++ S Sbjct: 1 MSKKLHLISLGCTKNLVDSEVMLGRLKS--YEITPLIEKADVIIVNTCGFIEAAKQESLS 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 L R K+G ++V +GC+++ EE+LR P ++++ G Y ++ +++ R Sbjct: 59 VLFEALE----RRKKGA--ILVASGCLSERYHEELLREIPEIDIITGVGDYDKIDQMV-R 111 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R G + + E++ ER ++ G V A++ + EGC++ C+FC +P +G Sbjct: 112 ERQGFHSGEVFLASEEQ-ER--VITGS-----SVHAYVKLSEGCNQTCSFCAIPQFKGKL 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLV 261 SR+L + E + LI G + + + Q+ +++ R + GEK L+ +L ++G+ Sbjct: 164 HSRTLESTLKEVKNLIAKGFTDFSFIAQDTSSYLRDR---GEKEGLIQLIGALDSLEGIK 220 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R +P S LI+A V+ Y +P+Q ++ +LK M R +++++++R Sbjct: 221 SARILYLYPSTASAKLIQAIQKSQVVQNYFDMPLQHIAESMLKRMKRGANQKKHKELLER 280 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R V P + + I+G PGE++++F +++ + + F YS GT M + Sbjct: 281 MRQV-PHSFVRTTLILGHPGESEEEFEELCRFLEEFRFDRVNLFAYSDEEGTSAHKMEGK 339 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 +D+ V RL L K +++Q + VGQ I V++E Sbjct: 340 LDKRVINARLKRLDKIIQKQHRALLKEMVGQEIPVILE 377 >gi|325854348|ref|ZP_08171547.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella denticola CRIS 18C-A] gi|325484142|gb|EGC87076.1| ribosomal protein S12 methylthiotransferase RimO [Prevotella denticola CRIS 18C-A] Length = 434 Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 125/456 (27%), Positives = 203/456 (44%), Gaps = 51/456 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK----VYSFL 84 + GC N+ DS + F + GY + ++ ++ V+NTC E A E+ + F Sbjct: 10 TMGCSKNLVDSELIMKQFEANGYHCTHDAENPQGEIAVINTCGFIEAAKEESINTILEFA 69 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R +N + +R+ V GC++Q +E+ P V+ G Y +L L +A Sbjct: 70 NRKKNGQLNRL--------YVMGCLSQRYKDELEAELPEVDKFYGKFNYKQLLSDLGKAD 121 Query: 145 F----GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 G R + T + A++ I EGCD+ C +C +P G Sbjct: 122 IPACNGVRHLTTPHHY---------------------AYVKIAEGCDRHCAYCAIPLITG 160 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 SR++ V+DE + L+ GV E ++ Q + + G LDG K ++L+ +++I+G+ Sbjct: 161 RHHSRTVEDVLDEVKGLVAQGVKEFQIIEQELTYY-GVDLDG-KHHITELISRMADIEGV 218 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++P L+ + YL + Q SD +L M+R T E +I Sbjct: 219 EWIRLHYAYPNQFPLDLLDVIAGKPNVCKYLDIAFQHISDHMLGRMHRHVTKQETLDLIA 278 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 IR P I + + +VGFPGET+ DF V ++ + + +F YS GT + E Sbjct: 279 EIRRRVPGIHLRTTLLVGFPGETEKDFEELKTFVREVRFERMGAFAYSEEEGTYSATHYE 338 Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435 V E VK +R+ L K + VG+ +V+I++ E +GR SP + Sbjct: 339 DDVPEKVKQQRIDELMKIQQGISEELEGEKVGRGFKVIIDR--IEGEYYIGRTEFCSPEV 396 Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468 VL K G VRITD L+GE+V Sbjct: 397 DPEVLIPIEGKTLQTGRFYDVRITDSDEFDLFGEVV 432 >gi|148555837|ref|YP_001263419.1| MiaB-like tRNA modifying enzyme [Sphingomonas wittichii RW1] gi|148501027|gb|ABQ69281.1| MiaB-like tRNA modifying enzyme [Sphingomonas wittichii RW1] Length = 419 Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 117/416 (28%), Positives = 179/416 (43%), Gaps = 42/416 (10%) Query: 64 LIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI 123 L+++N+C + AE V IR R + +VV GC AQ + Sbjct: 31 LVIVNSCAV---TAEAVKQARKAIRQAAKRRPEA----RIVVTGCAAQTD---------- 73 Query: 124 VNVVVGPQTYYRLPEL---LERARFGK-------RVVDTDYSVEDKFE-RLSIVDGGYNR 172 P + +PE+ + A G+ R D V D R + Sbjct: 74 ------PAAFAAMPEVARVIGNADKGRADLFAFDRGARADVHVSDVMAVRDTAPHMAAAF 127 Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232 AF+ +Q GCD CTFCV+PY RG S V+D + L+D+G E+ L G ++ Sbjct: 128 AAHARAFVEVQNGCDHRCTFCVIPYGRGNSRSVPAGIVIDRIKALVDDGHAEVVLTGVDL 187 Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLH 292 ++ G L G + L+ + GL RLR ++ ++ D L +MP++H Sbjct: 188 TSY-GPDLPGAPTLGQLVERILTHVPGLRRLRLSSLDSIEIDDRLFALLTQEARMMPHVH 246 Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 L +Q+G D ILK M RRH+ + +++R+R+ RP+IAI +D I GFP E + + Sbjct: 247 LSLQAGDDLILKRMKRRHSRAQAVAMVERLRAARPEIAIGADLIAGFPTEDETMAANSAA 306 Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412 L+D F +SPR GTP + M Q+D R L+ + ++ + VG Sbjct: 307 LIDDCDIVFGHVFPFSPRAGTPAARM-PQLDRATIRRRAADLRARAEARRARWLGTLVGT 365 Query: 413 IIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VL E+ G G +P V G I + IT V L G + Sbjct: 366 RQAVLAERGGG------GHAPNFARVRFEGTAPAPGAIANIIITGVDDGALTGRVA 415 >gi|291277351|ref|YP_003517123.1| putative MiaB-like tRNA modifying enzyme YliG [Helicobacter mustelae 12198] gi|290964545|emb|CBG40398.1| putative MiaB-like tRNA modifying enzyme YliG [Helicobacter mustelae 12198] Length = 438 Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 104/393 (26%), Positives = 202/393 (51%), Gaps = 28/393 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + + Y+ ++ AD+I++NTC + A E+ +G I + Sbjct: 8 SLGCTKNLVDSEVMLGVL--KEYKIIDDPSSADVIIINTCGFIQSAKEES---IGMILKM 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + KEG L+V +GC+ Q +E+ + P ++++ G Y R+ E++E+ +R + Sbjct: 63 AQEK-KEGA--LIVASGCLTQRYQKELREQIPEIDIITGVGDYDRIDEMIEQ----RRGI 115 Query: 151 DTD--YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 +D + ++K ER I+ G + A++ I EGC++ C+FC +P +G SRS+ Sbjct: 116 SSDRVFLADEKKER--IITGSR-----IHAYIKISEGCNQACSFCSIPSFKGKLKSRSIE 168 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVR-LRYT 266 V+ E + L G + T + Q+ +++ R G+ K L+ ++ E +GL R R Sbjct: 169 SVLKEIQNLSQRGYQDFTFIAQDSSSYLRDHGV---KDGLVQLIGAIEE-QGLARSARML 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI D + Y +P+Q ++LK M R + + +++ +R+V Sbjct: 225 YLYPSTTTPHLIAVIRDSKIFQNYFDMPIQHIHAKMLKRMKRGVSKERHIELLHAMRAV- 283 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD + S I+G PGE++++F ++ + + F +S G+ M E++ + Sbjct: 284 PDSFVRSTIIIGHPGESEEEFAELCSFLEDFVFDRLNVFAFSSEEGSAADLMEEKIPTKI 343 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 +R+ +++ L++QQ ++ +G+ EVL+E Sbjct: 344 INQRIKKIEQILKKQQKRILNSMIGKQYEVLLE 376 >gi|325002548|ref|ZP_08123660.1| hypothetical protein PseP1_27467 [Pseudonocardia sp. P1] Length = 501 Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 129/486 (26%), Positives = 204/486 (41%), Gaps = 67/486 (13%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-DLIVLNTCHIREKAAEKVY 81 P+R + + GC N DS + G+E V++ + D+I++NTC E+A + Sbjct: 7 APRRAALLTLGCARNEVDSEELAGRLTGSGWELVDAEGGSPDVILVNTCGFVEQAKKDSI 66 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPE--- 138 + L S + VV GC+A+ G E+ P + V+G Y L E Sbjct: 67 DTV-----LAASDVARPAGAKVVAVGCLAERYGAELAADLPEADAVLGFDAYPELAERLG 121 Query: 139 ------------------LLERARFGKRVVDTDYSV--EDKFERLSIVDGGYNRKR---G 175 LL + + D SV D L+ G R R G Sbjct: 122 DVLGGHAPAPHVPVDRRTLLPISPVERPAATADVSVPGHDWVPDLA----GIARTRLAGG 177 Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 A L + GCD+ C FC +P RG +SR + V+ EA L GV E+ L+ +N ++ Sbjct: 178 PVASLKLASGCDRRCAFCAIPSFRGSFVSRPPADVLGEAAWLASQGVRELVLVSENSTSY 237 Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295 GK L G DLL L G+ R+R + P ++ L+ A + PY L Sbjct: 238 -GKDLPGGTRALVDLLPRLGSTPGVERVRVSYLQPAELRPDLLAAIATTPGIAPYFDLSF 296 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-----T 350 Q S +L+ M R + ++ + RIR + P+ I S+ IVGFPGET++D T Sbjct: 297 QHASATVLRRMRRFGSRTDFLDLCTRIRELAPEAGIRSNVIVGFPGETEEDLAELEAFLT 356 Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE---NVKAERLLCLQKKLREQQVSFND 407 +D +G F YS GT +VD + R+ L +L EQ+ Sbjct: 357 GARLDAVGV-----FGYSDEDGTEAEGYDGKVDPAEVQARVARISALADELMEQRAEER- 410 Query: 408 ACVGQIIEVLIEKHGKE-----KGKLVGRSPWL--QSVVLNSKNHN-------IGDIIKV 453 +G + VL+E+ + G+ + P +S V+ + + GD+++ Sbjct: 411 --IGTEVVVLVERTDADDEDDCAGRAAHQGPDADGESYVVAAADDGPDPSSLRPGDLVRC 468 Query: 454 RITDVK 459 R+ D + Sbjct: 469 RVLDTE 474 >gi|150007589|ref|YP_001302332.1| putative Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503] gi|238066427|sp|A6LAJ6|RIMO_PARD8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|149936013|gb|ABR42710.1| putative Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503] Length = 432 Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 120/449 (26%), Positives = 216/449 (48%), Gaps = 38/449 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ F + GY E + +++V+NTC A E+ + + + Sbjct: 10 TLGCSKNLVDSEQLMRQFVANGYTVEHDPHKINGEIVVVNTCGFIGDAQEESINMILELG 69 Query: 89 NLKNS-RIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 K RI G L V+ GC+++ +++ + P V+ G + EL+ + GK Sbjct: 70 EQKQKGRI---GKLFVM--GCLSERFLKDLEKELPEVDRFYGK---FNWKELI--SDLGK 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E +R+ Y A++ I EGC++ C++C +P G SR + Sbjct: 120 -----SYHQELATDRVLTTPRHY-------AYVKIGEGCNRTCSYCSIPIITGAYQSRPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVRLRYT 266 ++VDE R L+ GV E ++ Q++ + GLD K +L+ +S+I G+ +R Sbjct: 168 DEIVDEVRGLVAQGVKEFQMIAQDLTFY---GLDRYKRMALPELVERVSDIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P L+ + D + Y+ + +Q SD +LK M R T E ++++R+R Sbjct: 225 YGYPSHFPYDLLPVMRERDNVCKYMDIALQHISDPMLKMMRRNITKAETYELLERMRREV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDEN 385 P I + + +VG PGET+ DF + V I + + +F YS GT + +++ + Sbjct: 285 PGIHLRTTLMVGHPGETEQDFEELIRFVKDIRFERMGAFAYSHEEGTYAYQHYKDEIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441 VK +RL L + N + VGQ V++++ +E+ VGR SP + +L Sbjct: 345 VKQDRLDYLMRVQEGISADVNASKVGQTFRVIVDR--EEEDFYVGRTQYDSPEVDPEILI 402 Query: 442 SKNHNI--GDIIKVRITDVKISTLYGELV 468 SK+ + G +V++ D + LYG+++ Sbjct: 403 SKDTPLSPGSFYQVKVIDAQAFDLYGKVL 431 >gi|149201229|ref|ZP_01878204.1| RNA modification enzyme, MiaB-family protein [Roseovarius sp. TM1035] gi|149145562|gb|EDM33588.1| RNA modification enzyme, MiaB-family protein [Roseovarius sp. TM1035] Length = 480 Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 124/450 (27%), Positives = 201/450 (44%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 55 SLGCPKALVDSERILTRLRAEGYGISPDYTGADAVIVNTCGFLDSAKAESLEAIGEALA- 113 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ AE E I P V V GP Y ++ + + A Sbjct: 114 ENGR--------VIVTGCLG-AEPEYITGVHPRVLAVTGPHQYEQVLDAVHLAV------ 158 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L G R + +L I EGC+ C FC++P RG SR V Sbjct: 159 ---PPSPDPFIDLLPASGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGKLQSRPAHAV 214 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVRL 263 + EA KL+++GV E+ ++ Q+ +A+ G+D G + +DL L + VRL Sbjct: 215 IREAAKLVESGVKELLVISQDTSAY---GVDIRHAEERGHRAHITDLARDLGGLGAWVRL 271 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y +P + A G +++PYL +P Q +L+ M R A + I R Sbjct: 272 HYVYPYPHVRDLIPLMAEG---LVLPYLDIPFQHAHPEVLRRMARPAAAAKTLDEIAAWR 328 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P+IA+ S FIVG+PGET+ +F+ +D +D+ + F+Y G + + + V Sbjct: 329 RDCPEIALRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHVA 388 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVGRSPWLQSVVL 440 VK ER +K + + A VGQ +EV+ I+ G + +P + + Sbjct: 389 AEVKQERWDRFMEKAQAISEAKLAAKVGQRMEVIVDEIDADGIATCRTKADAPEIDGNLF 448 Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ ++GDI+ V + + L+G L Sbjct: 449 IDEGTEEVSVGDIVSVVVDEAGEYDLWGRL 478 >gi|313886493|ref|ZP_07820209.1| ribosomal protein S12 methylthiotransferase RimO [Porphyromonas asaccharolytica PR426713P-I] gi|312924039|gb|EFR34832.1| ribosomal protein S12 methylthiotransferase RimO [Porphyromonas asaccharolytica PR426713P-I] Length = 443 Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 121/450 (26%), Positives = 209/450 (46%), Gaps = 34/450 (7%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK 79 ++ + V S GC N+ DS + GY + D+ ++ V+NTC + A E+ Sbjct: 1 MIANQIDVISLGCSKNLVDSDALMRRLAQYGYTLRHDPDELTGEIAVVNTCGFIQAAQEE 60 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 + + + K KEG + V GC+ + EE+ P V+ + G + +L Sbjct: 61 SINLILSLIEAK----KEGRIRAIYVMGCLGERFREELTAELPEVDKIYGKYDWKQLITD 116 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 L A Y S+ Y +++ I EGCD+ C++C +P Sbjct: 117 LGPALSADDATPLSYRTPPP----SVTPQHY-------SYIKISEGCDRTCSYCAIPLIT 165 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G SR + ++V E K + G E ++ Q+ + + G L E+ + LL L++++G Sbjct: 166 GRHHSRPMEEIVREIEKRVATGCREFQIIAQD-STYYGVDLYQEQA-IATLLDRLAQVEG 223 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + LR ++P L+ D + YL L +Q S+ +L+ M R+ T E ++ Sbjct: 224 VHWLRLHYAYPNHFPLELLDVMAKHDNICKYLDLALQHSSNHMLQLMRRQITREETIVLL 283 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNM 378 +RIR P IA+ + +VG PGETD+DF +D V ++ + + +F+YS GT + Sbjct: 284 ERIRKQVPGIALRTTMMVGHPGETDEDFADLLDFVSQMRFERLGAFQYSHEEGTYAYKHY 343 Query: 379 LEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR---- 431 + V VK ER L+ LQ+ + S N VG +EV++++ +E+ VGR Sbjct: 344 QDDVPPEVKQERYDALMSLQETI---STSINSRKVGTTLEVVVDR--EEEDYYVGRTQYD 398 Query: 432 SPWLQSVVLNSKNH--NIGDIIKVRITDVK 459 SP + V+ S + +G + IT V+ Sbjct: 399 SPEVDGEVILSSDSPLRVGSFYQAEITGVE 428 >gi|292656724|ref|YP_003536621.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii DS2] gi|291371073|gb|ADE03300.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii DS2] Length = 429 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 118/458 (25%), Positives = 205/458 (44%), Gaps = 58/458 (12%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ +++YGC N +S +E G+ RV+ ++AD+ ++NTC + EK + L Sbjct: 3 RYHIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTER---NMLR 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGE---------EILRRSPIVNVVVGPQTYYRL 136 R + L E DL ++ GC+A A+G +IL + V + Sbjct: 60 RAKELA----AETADL--IITGCMALAQGNDFREEGIDAQILHWDDVPAAVTNGECPTPG 113 Query: 137 PELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 P + + V+D GV L I GC C++C+ Sbjct: 114 PGV-------EPVLD-----------------------GVVGILPIARGCMSNCSYCITK 143 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-S 255 + G S S+ + V++AR L+ G E+ + GQ+ + G D +LL + + Sbjct: 144 FATGRVDSPSVDENVEKARALVHAGAKELRITGQDTGVY---GWDNGDRKLPELLDRICT 200 Query: 256 EIKGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 EI G R+R ++P + D L D L ++H PVQSGSD +L+ M R+H Sbjct: 201 EIDGEFRVRVGMANPGGVHGIRDELAAVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRV 260 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 ++R+I++ +S+DFIVG+P ETD D +M+L+ ++ + ++S R G Sbjct: 261 DKFREIVETFDRELDYWTLSTDFIVGYPTETDADHERSMELLREVRPEKVNVTRFSKRPG 320 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 T ++ L+ + +K ER + + + + D VG +VL+ + G Sbjct: 321 TDAAD-LKGLGGTLKKERSKEMSEAKMDIVAAAYDEMVGTERDVLVVEEGTGDSVKCRDE 379 Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + Q +V N+ H + GD +V +T + + E V Sbjct: 380 AYRQIIVQNATEHGLEPGDFARVTVTAHQTVYAFAEPV 417 >gi|99080490|ref|YP_612644.1| hypothetical protein TM1040_0649 [Ruegeria sp. TM1040] gi|123252523|sp|Q1GIY4|RIMO_SILST RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|99036770|gb|ABF63382.1| hypothetical protein TM1040_0649 [Ruegeria sp. TM1040] Length = 467 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 127/464 (27%), Positives = 207/464 (44%), Gaps = 57/464 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 33 SLGCPKALVDSERILTRLRAEGYGISADYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 89 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ AE + I P + V GP Y ++V+ Sbjct: 90 ----LKENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQY-------------EQVL 129 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D ++ D F L G R + +L I EGC+ C FC++P RG SR Sbjct: 130 DAVHAAVPPSPDPFVDLLPATGVSLTPRHFS-YLKISEGCNHKCKFCIIPDMRGKLASRP 188 Query: 207 LSQVVDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGE-KCTFSDLLYSL 254 V+ EA KL+ GV E+ ++ Q+ VN W+ DGE + +DL +L Sbjct: 189 AHAVLREAEKLVTAGVRELLVISQDTSAYGLDRKYDVNPWK----DGEVRSHITDLSRAL 244 Query: 255 SEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRR 309 E+ VRL Y +P LI D + ++PYL +P Q +L+ M R Sbjct: 245 GELAPADQLWVRLHYVYPYPHVRE--LIPLMADPENAVLPYLDIPFQHAHPDVLRRMARP 302 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 A + I R++ PDI + S FIVG+PGET+ +F+ +D +D+ + FKY Sbjct: 303 AAAAKTLDEIRAWRAICPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYEN 362 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKG 426 G +++ + V E VK R +K + + + VGQ ++V+ I++ G Sbjct: 363 VDGARSNDLPDHVAEEVKQNRWERFMEKAQAISEAKLASKVGQTLQVIVDEIDEDGIATC 422 Query: 427 KLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGEL 467 + +P + + + N ++GD++ V + + L+G L Sbjct: 423 RTKADAPEIDGNLFIDEGTANLSVGDLVTVEVDEAGEYDLWGAL 466 >gi|298528465|ref|ZP_07015869.1| RNA modification enzyme, MiaB family [Desulfonatronospira thiodismutans ASO3-1] gi|298512117|gb|EFI36019.1| RNA modification enzyme, MiaB family [Desulfonatronospira thiodismutans ASO3-1] Length = 429 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 111/390 (28%), Positives = 186/390 (47%), Gaps = 39/390 (10%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 FF+ + GC++N Y+S + + QG + + A I +N+C + +A + + L R Sbjct: 6 FFMTTLGCRVNQYESQAISEALQRQGLVPADGPEQAGYIYVNSCAVTARAVKDLKKTLRR 65 Query: 87 IR-NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +R +RI +V GC AQ EE+ + VV PQ+ R +L Sbjct: 66 LRVQAPQARI--------IVTGCAAQIFEEELGALEEVDLVV--PQS--RKTSILASPFP 113 Query: 146 GKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 D DY + F R R V + +Q+GC + C++C+VP +RG + Sbjct: 114 DPHAGDPGLDYWITSYF-----------RARPV---VKVQDGCSRGCSYCIVPASRGAPV 159 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL-----SEIK 258 SR V+ E + L++ G EI + G N+ + G LD + F DL+ L SE + Sbjct: 160 SRPPEVVLREIQGLLNRGYREIVISGINLGMY-GVDLDARE-DFWDLICYLEKNLASEWE 217 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 +RLR ++ P + I ++ P+ HL +QSG +L M R H + + I Sbjct: 218 DRMRLRLSSLDPAMLDSRGIDIISSSVLICPHFHLSLQSGCTWVLTRMGRDHY-HPAKAI 276 Query: 319 --IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++R+ P ++ +DF+VGFPGE D F T+ L + + + F YSPR GT + Sbjct: 277 FFVERLERTIPFYSMGADFLVGFPGEKPDYFERTLKLTEALPLSYGHVFTYSPRPGTRAA 336 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFN 406 +Q+ ++VK +R L++ L+ ++ F Sbjct: 337 RWPDQIAQHVKEKRARELKEVLKHKRQRFT 366 >gi|237746819|ref|ZP_04577299.1| fe-s oxidoreductase [Oxalobacter formigenes HOxBLS] gi|229378170|gb|EEO28261.1| fe-s oxidoreductase [Oxalobacter formigenes HOxBLS] Length = 468 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 127/467 (27%), Positives = 208/467 (44%), Gaps = 56/467 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GYE + DA L+++NTC + A + + Sbjct: 11 SLGCPKALVDSERILTRLRAEGYETAETYKDAGLVIVNTCGFIDAAEAESLEAIAEA--- 67 Query: 91 KNSRIKEGGDLLVVVAGCV-AQAEGEE---ILRRSPIVNVVVGPQTYYRLPELLER--AR 144 ++E G V+V GC+ A+ +G I P V V GP + ++ + + R R Sbjct: 68 ----LEENGK--VIVTGCLGAKKDGAGAGFIKSVLPKVLEVTGPDSVQQVMDAVHRHLPR 121 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 + VD + G A+L I EGC CTFC++P RG IS Sbjct: 122 PHEPFVDL------------VPPQGIKLTPRHYAYLKISEGCSHHCTFCIIPDLRGSLIS 169 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYS 253 S+ +V+DEA L +GV E+ ++ Q+ A W G+ + ++ L Sbjct: 170 YSVGKVLDEAEMLFQSGVKELLVISQDTGAYGLDIQFRTGFWNGRPVRTHVTQLTEQLGR 229 Query: 254 LSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 L+ G VRL Y +P D L+ + VL PYL +P Q +LK M R + Sbjct: 230 LARKYGAWVRLHYIYPYPH--IDDLLPLMNEGGVL-PYLDVPFQHAHPDVLKRMRRPASG 286 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 ++ + I R + PD+ I S FI GFPGET+ +F +D + + + F YSP G Sbjct: 287 EKHLERIQTWRKMCPDMTIRSTFIAGFPGETEAEFTYLLDFLKEARIDRLGCFPYSPVEG 346 Query: 373 TPGSNMLEQVD---ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGK 427 +++ V + RL+ LQ+ + +++ +G+ + VL+++ G G+ Sbjct: 347 AKANDLPGAVPEEIREERRARLMQLQEAISYERLQEK---IGKTLRVLVDETIRGGALGR 403 Query: 428 LVGRSPWLQSVVLNSKNHNI------GDIIKVRITDVKISTLYGELV 468 +P + VV K + G+ + V I D L+GE+V Sbjct: 404 SSADAPEIDGVVYVRKPKGMRRKLAPGEFVDVLIHDADAHDLWGEMV 450 >gi|302537296|ref|ZP_07289638.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. C] gi|302446191|gb|EFL18007.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. C] Length = 500 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 127/444 (28%), Positives = 192/444 (43%), Gaps = 60/444 (13%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G+E V DAD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLAADGWELVEDAADADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 L +LK+ G VV GC+A+ G+E+ P + V+G Y + L Sbjct: 61 VDALLEANDLKD----HGKTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISNRL 116 Query: 141 ERARFGKRVVDTDYSVEDKFERLSI----------------------------VDGGYNR 172 + G V ++ D+ + L I + G Sbjct: 117 QTILSGGSV--EAHTPRDRRKLLPISPAERQSADVALPGHAQAAEEPAPAPADLPDGLAP 174 Query: 173 KRGVTAFL------------TIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220 G A L + GCD+ C+FC +P RG ISR S V+ E R L + Sbjct: 175 ASGPRAPLRRRLDKSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQ 234 Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKA 280 GV E+ L+ +N N GK L G+ LL L+ + G+ R+R + P +M LI Sbjct: 235 GVKEVMLVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLIDV 292 Query: 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340 ++PY L Q + +L++M R + +++D IRS P + S+FIVGFP Sbjct: 293 LTSTPKVVPYFDLSFQHSAPDVLRAMRRFGDTDRFLELLDTIRSKAPQAGVRSNFIVGFP 352 Query: 341 GETDDDFRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395 GE + DF T +D IG F YS GT + ++DE+ AERL +Q Sbjct: 353 GEKESDFAELERFLTHARLDAIGV-----FGYSDEDGTEAAGYEGKLDEDTIAERLAHMQ 407 Query: 396 KKLREQQVSFNDACVGQIIEVLIE 419 + E + +G+ +EVL+E Sbjct: 408 RLAEELTSQRAEERIGETLEVLVE 431 >gi|296269078|ref|YP_003651710.1| MiaB-like tRNA modifying enzyme YliG [Thermobispora bispora DSM 43833] gi|296091865|gb|ADG87817.1| MiaB-like tRNA modifying enzyme YliG [Thermobispora bispora DSM 43833] Length = 473 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 123/443 (27%), Positives = 193/443 (43%), Gaps = 48/443 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 + GC N DS + + G+ S DD D+IV+NTC + A E + + L Sbjct: 11 TLGCARNEVDSEELAARLEAAGWRL--SDDDPDVIVVNTCGFIDSAKKESIDTLLA---- 64 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-------VG------------- 129 +S K VV AGC+A+ G+E+ P V+ +G Sbjct: 65 AADSGAK------VVAAGCLAERYGKELAEALPEATVISFDDYAEIGDRLDDVLAGRPLR 118 Query: 130 ---PQTYYRLPELLERARFGKRVVDTDYSV---EDKFERLSIVDGGYN-RKR---GVTAF 179 P+ RL + R R + E E ++ G RKR G A Sbjct: 119 PHTPRDRRRLLPITPVDRSAARARIPGHGARADEPLPEGVAPASGPRTLRKRLTGGPVAP 178 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 + + GCD+ C FC +P RG +SR ++ EAR L + GV EI L+ +N ++ GK Sbjct: 179 IKLASGCDRRCAFCAIPAFRGAYVSRPPEDLIAEARWLAEQGVKEIVLVSENSTSY-GKD 237 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL L+ +G+ R+R P ++ LI+ + PY L Q S Sbjct: 238 L-GDLRALERLLPKLAATEGIERVRVNYLQPAELRPSLIEMLTSTPGVAPYFDLSFQHAS 296 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+ M R A + +++RIR P+ I S+FIVGFPGET++DF +++ Sbjct: 297 GPLLRRMRRFGDARRFLDLLERIRERAPEAGIRSNFIVGFPGETEEDFAELKGFLEEARL 356 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 F YS GT +++D++ ER+ L E + +G +E+LIE Sbjct: 357 DVIGVFGYSDEEGTEAYGFPDKLDQDTIDERVAELSALADELMAQRAEERIGTELEILIE 416 Query: 420 K---HGKEKGKLVGRSPWLQSVV 439 + G +G+ + P + V Sbjct: 417 EDLGDGGYEGRAAHQGPEVDGTV 439 >gi|307329206|ref|ZP_07608371.1| RNA modification enzyme, MiaB family [Streptomyces violaceusniger Tu 4113] gi|306885105|gb|EFN16126.1| RNA modification enzyme, MiaB family [Streptomyces violaceusniger Tu 4113] Length = 498 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 117/405 (28%), Positives = 175/405 (43%), Gaps = 42/405 (10%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G+E V +AD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLAADGWELVEEATEADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 L +LK+ G VV GC+A+ G+E+ P + V+G Y + + L Sbjct: 61 VDALLEANDLKD----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRL 116 Query: 141 --------------------------ERARFGKRVVD---TDYSVEDKFERLSIVDGGYN 171 ER + D + ED E ++ G Sbjct: 117 RTILAGGVHASHTPRDRRKLLPISPAERQDAASVALPGHAQDTAPEDLPEGVAPASGPRA 176 Query: 172 --RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226 R+R A + + GCD+ C+FC +P RG ISR S V+ E R L + GV EI Sbjct: 177 PLRRRLDSSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEIM 236 Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286 L+ +N N GK L G+ LL L+ + G+ R+R + P +M LI + Sbjct: 237 LVSEN-NTSYGKDL-GDIRLLETLLPELAAVDGIERIRVSYLQPAEMRPGLIDVLTSTEK 294 Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 + PY L Q + +L++M R + ++++ IR P S+FIVGFPGET+DD Sbjct: 295 VAPYFDLSFQHSAPGVLRAMRRFGDTDRFLELLETIRGKAPQAGARSNFIVGFPGETEDD 354 Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391 + + F YS GT + +VD V AERL Sbjct: 355 LAELERFLSEARLDAIGVFGYSDEDGTEAAGYENKVDPEVVAERL 399 >gi|78777931|ref|YP_394246.1| hypothetical protein Suden_1737 [Sulfurimonas denitrificans DSM 1251] gi|123768589|sp|Q30PS0|RIMO_SULDN RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|78498471|gb|ABB45011.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM 1251] Length = 439 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 113/449 (25%), Positives = 212/449 (47%), Gaps = 41/449 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + S GC N+ D+ M M Q +E ++ DAD+I++NTC + A ++ + Sbjct: 3 NKLHIVSLGCTKNLVDTEVM--MGKLQNFELTDNQSDADVIIVNTCGFIDAAKQES---I 57 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ER 142 + NL ++R KE D ++V+AGC+++ EE+ + P V++ G Y ++ ELL ++ Sbjct: 58 NTVLNLHDAR-KE--DSVLVMAGCLSERYKEELAKDMPEVDIFTGVGDYDKIDELLVEKK 114 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRG 200 +RF E + ++DG G T A++ + EGC++ C+FC +P +G Sbjct: 115 SRFS--------------EAVYLIDGAERVVTGSTYHAYIKLSEGCNQTCSFCAIPSFKG 160 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKG 259 SR+L + E L+ G + + + Q+ +++ R K + K S L+ + I+G Sbjct: 161 KLNSRTLDSIAKEVESLVKKGYWDFSFVSQDSSSYLRDKNV---KDGLSLLIQRVELIEG 217 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + R +P S L+K ++ Y +P+Q +D +L+ M R + +++ Sbjct: 218 VKSARILYLYPSTTSMALLKNIAKSEIFHNYFDMPIQHINDDMLRIMKRGFGKKQTLELL 277 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + ++S+ P+ I + FIVG PGE+ + F G+ + F YS TP M Sbjct: 278 EFMKSL-PNSFIRTSFIVGHPGESQEMFDEMCKFASSFGFERINVFAYSDEETTPAHEMS 336 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS-- 437 +++ V +R L K + + +G+ ++I+K E L+ L + Sbjct: 337 DKIAAKVINKRASILGKIAADVMQASLKKEIGKETLLVIDKESDEHEYLLSARKILWAPD 396 Query: 438 ----VVLNSKNH----NIGDIIKVRITDV 458 + +N ++ N G I ITD+ Sbjct: 397 IDGEIYVNDRSGEEELNFGAIYNAEITDM 425 >gi|121605338|ref|YP_982667.1| ribosomal protein S12 methylthiotransferase [Polaromonas naphthalenivorans CJ2] gi|238066437|sp|A1VQ18|RIMO_POLNA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|120594307|gb|ABM37746.1| SSU ribosomal protein S12P methylthiotransferase [Polaromonas naphthalenivorans CJ2] Length = 461 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 124/475 (26%), Positives = 204/475 (42%), Gaps = 73/475 (15%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R + S GC + DS + ++GY+ + + ADL+++NTC + A + +G Sbjct: 10 RIGMVSLGCPKALTDSELILTRLSAEGYQTSKTFEGADLVIVNTCGFIDDAVRESLDTIG 69 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPELLE 141 V+V GC+ G+ + + P V V GP Sbjct: 70 EALAANGK---------VIVTGCLGAKSGDNGSNLVRQMHPSVLAVTGPHAT-------- 112 Query: 142 RARFGKRVVDTDY----SVEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 + V+D + D F L + G A+L I EGC+ CTFC+ Sbjct: 113 -----QEVMDAVHLNLPKPHDPFVDLVPNAFGIAGIKLTPRHYAYLKISEGCNHRCTFCI 167 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGE 243 +P RG +SR + V+ EAR L + GV E+ ++ Q+ +A W GK + Sbjct: 168 IPSMRGDLVSRPVGDVLSEARALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPV--- 224 Query: 244 KCTFSDLLYSLSEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 K +L+ +L EI VRL Y +P + A G + +PYL +P+Q Sbjct: 225 KTRMLELVQALGEIAAPFGAWVRLHYVYPYPSVDEILPLMATGKV---LPYLDVPLQHSH 281 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+ M R + + + I R R + P+I I S FI GFPGET+ +F +D + + Sbjct: 282 PDVLRRMKRPASGEKNLERISRWREMCPEIVIRSTFIAGFPGETEAEFEHLLDFMREAKI 341 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEV 416 +A F YS G +++ + V+ E R + + + + Q++ VG ++V Sbjct: 342 DRAGCFAYSAVQGATANDIPGMLPLGVREERRARFMAVAEAVSSQKLQQR---VGATMQV 398 Query: 417 LIEKHGKEKGKL--VGRS----PWLQSVV------LNSKNHNIGDIIKVRITDVK 459 L++ H G+ GRS P + VV SK +G+ + RI V+ Sbjct: 399 LVD-HAPALGRKGGTGRSYADAPEIDGVVKLLPPEKISKTMKVGEFTRARIVGVQ 452 >gi|283954557|ref|ZP_06372076.1| hypothetical protein C414_000230057 [Campylobacter jejuni subsp. jejuni 414] gi|283793961|gb|EFC32711.1| hypothetical protein C414_000230057 [Campylobacter jejuni subsp. jejuni 414] Length = 417 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 104/396 (26%), Positives = 189/396 (47%), Gaps = 54/396 (13%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ F K++GC+ N+YD+ ++ + + YE +N+ D A +IV+N+C + A + S Sbjct: 1 MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINNEDKAQIIVINSCTVTNGADSGIKS 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQ 131 ++ N+ K+G + V++ GC A ++G+E L + + +N +G + Sbjct: 59 YI-------NTMQKKG--IKVILTGCGAVSKGKEFLDKKQVFGVLGASNKDKINEFLGAK 109 Query: 132 T-YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 T +Y L L +D D E + AF+ IQEGCD C Sbjct: 110 TSFYELGNL--------NFIDKDIVCE--------------YENHTKAFVKIQEGCDFAC 147 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 ++C++P RG S ++ + L NG EI L G N+ ++ GL T L Sbjct: 148 SYCIIPSVRGKSRSVDEKTLLKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTTLGKL 203 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR- 309 L + +I G+ R+R + P + + ++ D L +LH+ +Q S+++L+ M RR Sbjct: 204 LQKMGQISGIKRIRLGSLEPAQIDESFLEIL-DEAWLERHLHIALQHTSEKMLRIMRRRS 262 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 HT + R + + I S A+ +DFIVG PGE+ + + + + +F +SP Sbjct: 263 HTDNDLR-LFNIIAS--KGYALGTDFIVGHPGESVEIWEEALKNFKEFSLTHIHAFIFSP 319 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405 R T + M + ++ + ERL L+ + + +F Sbjct: 320 RNNTHSATMKDVINGTLAKERLNVLKSIVEKNNYNF 355 >gi|268679888|ref|YP_003304319.1| MiaB-like tRNA modifying enzyme [Sulfurospirillum deleyianum DSM 6946] gi|268617919|gb|ACZ12284.1| MiaB-like tRNA modifying enzyme [Sulfurospirillum deleyianum DSM 6946] Length = 414 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 104/445 (23%), Positives = 208/445 (46%), Gaps = 34/445 (7%) Query: 25 QRFFVKSYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F K++GC+ N+YD+ + ME++ + +E +AD++V+N+C + A V S+ Sbjct: 2 KKVFFKTFGCRTNIYDTQVMMENL---KDFEVTEHEAEADIVVVNSCTVTNGADTGVRSY 58 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + L VV+AGC A ++GE + ++ + V+ G + LL A Sbjct: 59 INHASKLGKK---------VVLAGCGAMSKGEALFAQNRVFGVL-GHSEKRSINTLLHNA 108 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + + D + Y K AF+ IQEGC+ C++C++P+ RG Sbjct: 109 -------TPFFQIGDLTSLDETIVHEYTGK--TKAFIKIQEGCNFRCSYCIIPFVRGNAR 159 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S+ +++++ KL NG E L G N+ ++ + KG + L+ L I+G+ R Sbjct: 160 SQDEQKIIEQVEKLALNGYGEFVLTGTNIGSYGKDKG-----SSLGRLVQRLGAIRGVRR 214 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R + P + + + + L +LH+ +Q S+ +L+ M RR+ ++ + Sbjct: 215 IRLGSIEPVQIDESFREILNE-PWLERHLHIALQHTSEAMLQLMRRRNNVKRDLELFMEL 273 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 A+ +DFI G PGE++ + +++ +F YS R GTP S M ++ Sbjct: 274 GE--KGFALGTDFITGHPGESEAIWEEAYSTLERFPLTHIHAFTYSKRDGTPSSTMKPEI 331 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 ++ R ++ + + +F + +EVL+E++ ++ VG + V++ S Sbjct: 332 KGDIAKIRHQQVEALIERKNRAFREKNHTTPLEVLVEEY--KENFFVGYDQFYNKVMIQS 389 Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467 + + + +K+ D++ Y Sbjct: 390 ERDLLKEWVKLESYDIRQEANYAHF 414 >gi|119716546|ref|YP_923511.1| MiaB-like tRNA modifying enzyme YliG [Nocardioides sp. JS614] gi|238066419|sp|A1SJ39|RIMO_NOCSJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|119537207|gb|ABL81824.1| SSU ribosomal protein S12P methylthiotransferase [Nocardioides sp. JS614] Length = 480 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 120/454 (26%), Positives = 202/454 (44%), Gaps = 39/454 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N DS + + G+ V +AD +V+NTC E A + L + +L Sbjct: 20 TLGCARNEVDSEELAGRLEADGFRLVQDPAEADTVVVNTCGFVEAAKKDSVDTLLQAADL 79 Query: 91 K-NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR----- 144 K S +G VV GC+A+ G+++ P + V G Y P++ R R Sbjct: 80 KARSEQGQGRTRAVVAVGCLAERYGKDLAASLPEADAVFGFDDY---PDIAARLRSIVAG 136 Query: 145 --------FGKRVVDTDYSVEDKFERLSI---VDGGYNRKR----GVTAFLTIQEGCDKF 189 +R + VE + G + +R G TA L + GCD+ Sbjct: 137 EAHEAHTPHDRRTLLPITPVERVLSTTPVPGHASGPASVRRRLDDGPTAALKLASGCDRR 196 Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249 C+FC +P RG +SR S V+ EAR L D+G E+ L+ +N ++ GK L G+ Sbjct: 197 CSFCAIPAFRGSFLSRRPSDVLQEARWLADHGARELFLVSENSTSY-GKDL-GDLRLLET 254 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 LL L+ + G+ R+R + P + LI+A + PY L Q S +L+ M R Sbjct: 255 LLPELAAVDGVERVRVSYLQPAETRAGLIEAIASTPGVAPYFDLSFQHASAPVLRRMRRF 314 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + ++ ++R P + S+ IVGFPGET+ D D + F YS Sbjct: 315 GDPESFLALLAQVRGHAPAAGVRSNVIVGFPGETEQDLETLCDFLVAARLDVTGVFGYSD 374 Query: 370 RLGTPGSNMLEQVDEN---VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-----H 421 GT + ++D++ + E + L ++L Q+ + +G+ +EVL+E+ Sbjct: 375 EDGTEAATYDGKLDDDEIRARVEHVSDLVEELTSQRAAER---LGEQVEVLVERVEDGPG 431 Query: 422 GKE-KGKLVGRSPWLQSVV-LNSKNHNIGDIIKV 453 G+ +G+ + P + L + +GD+++ Sbjct: 432 GRTVEGRAAHQGPEVDGATYLLDSDARVGDLVRA 465 >gi|210134483|ref|YP_002300922.1| miaB-like tRNA modifying enzyme [Helicobacter pylori P12] gi|210132451|gb|ACJ07442.1| miaB-like tRNA modifying enzyme [Helicobacter pylori P12] Length = 418 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 109/392 (27%), Positives = 187/392 (47%), Gaps = 39/392 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD++V+N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIVVINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S +++++ L GV E+ L G NV ++ G D E + L+ LS+I GL Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSY---GKDKE-SNIARLIKKLSQIAGLK 215 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R+++++ Sbjct: 216 RIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEK 274 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I S + AI +DFIVG PGE+ F ++ + F YS R TP S M + Sbjct: 275 IAS--KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMRDS 332 Query: 382 VDENVKAERLLCLQ-------KKLREQQVSFN 406 V +RL ++ K R+ Q+ N Sbjct: 333 VSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364 >gi|189465617|ref|ZP_03014402.1| hypothetical protein BACINT_01975 [Bacteroides intestinalis DSM 17393] gi|189437891|gb|EDV06876.1| hypothetical protein BACINT_01975 [Bacteroides intestinalis DSM 17393] Length = 432 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 120/450 (26%), Positives = 209/450 (46%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS + GY + + ++ V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEHLMRQLEEAGYHVTHDTEKPKGEIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE G+L + V GC+++ +E+ P V+ G + ELL GK Sbjct: 66 -LEFAQAKEEGNLEKLYVMGCLSERYLKELAIEIPQVDKFYGK---FNWAELL--LDLGK 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER Y A+L I EGCD+ C++C +P G +SR + Sbjct: 120 A-----YHEELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPV 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE R L++ GV E ++ Q + + G+D +K +L+ +SEI G+ +R Sbjct: 168 EEILDEVRYLVNKGVKEFQIIAQELTYY---GVDLYKKQMLPELIERISEIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + + Y+ + +Q S+ +L+ M R T E Q+I++ R Sbjct: 225 YAYPAHFPTDLFRVMRERPNVCKYMDIALQHISNSMLEKMRRHVTQEETYQLIEQFRKEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385 P I + + +VG PGET+ DF + V K+ + + +F YS GT + E ++ + Sbjct: 285 PGIHLRTTLMVGHPGETESDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAHYEDEIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLN 441 VK RL L + + A VGQ ++V+I++ E +GR SP + VL Sbjct: 345 VKQARLDELMSIQQGISAELSAAKVGQSMKVIIDR--LEGDYYIGRTEFDSPEVDPEVLI 402 Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELV 468 + IG+ +V I L+G+++ Sbjct: 403 ERGEQTLLIGNFYQVEIISSDDFDLFGQVI 432 >gi|217033424|ref|ZP_03438854.1| hypothetical protein HP9810_1g38 [Helicobacter pylori 98-10] gi|216944129|gb|EEC23557.1| hypothetical protein HP9810_1g38 [Helicobacter pylori 98-10] Length = 418 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 108/393 (27%), Positives = 189/393 (48%), Gaps = 41/393 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + ++ V G ++ LL E Sbjct: 58 YAKKMVRLNKE---------VLFTGCGVKTQGKELFEKG-LLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260 S +++++ L GV E+ L G NV ++ + KG + L+ LS+I GL Sbjct: 160 ARSFEERKILEQVSLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQIAGL 214 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + + + D L +LH+ +Q D +L+ MNRR+ A R++++ Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRAKSDRELLE 273 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 I S + AI +DFI+G PGE++ F ++ + F YS R TP S M + Sbjct: 274 VIAS--KNFAIGTDFIIGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331 Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406 V +RL ++ K R+ Q+ N Sbjct: 332 SVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364 >gi|307354819|ref|YP_003895870.1| MiaB-like tRNA modifying enzyme [Methanoplanus petrolearius DSM 11571] gi|307158052|gb|ADN37432.1| MiaB-like tRNA modifying enzyme [Methanoplanus petrolearius DSM 11571] Length = 404 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 114/454 (25%), Positives = 210/454 (46%), Gaps = 67/454 (14%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI---REKAAEKVY 81 ++ +++YGC N D+ ++ + QG V +A+ +++NTC + E+A +V Sbjct: 7 KKIHLETYGCTFNFADTEKIVRVAEKQGCSIVPP-GEAEAVIINTCTVVAQTERAMLRV- 64 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 I E D + V GC+A + + I P +++ P+ R PE + Sbjct: 65 -------------IAEFPDKEIYVTGCMAVVQPDLIYGVRPDARLIL-PEDLNRCPETIG 110 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 S+VDG T + GC C +C+ RG Sbjct: 111 ----------------------SLVDGS-------TGIVQTARGCVSRCAYCITRSARGR 141 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S ++++E +L+ G EI L GQ+++A+ G+D + DLL ++ ++G Sbjct: 142 LRSFPEDKIIEEIERLVSAGAVEIQLTGQDLSAY---GMD-TGSSLPDLLNRINSLEGEF 197 Query: 262 RLRYTTSHPR-------DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 +R +P ++SD + + + + HLPVQSGSD++L M R + + Sbjct: 198 MVRVGMMNPSTAIPLTDELSDAFLG-----EKIFSFAHLPVQSGSDKVLSDMKRGYQVQD 252 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +R ++ +R P I IS+DFIVG+P ET++DF T+ L+++I + ++S R GT Sbjct: 253 FRNLVAELRKKDPGIRISTDFIVGYPTETEEDFLKTLALLEEIRPTKVNITRFSAREGTD 312 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 + L+ + + +K ER L S N++ +G+ ++V++ + K G + R Sbjct: 313 AAK-LKDIPDWIKKERSRALTIAANRLYDSVNESFIGKDLDVIVTER-KRAGSCIARDKS 370 Query: 435 LQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++V+ + + G +VRI + L GE + Sbjct: 371 YNNIVIE-EELDAGTRCRVRIVSHRRHYLIGERI 403 >gi|153816137|ref|ZP_01968805.1| hypothetical protein RUMTOR_02385 [Ruminococcus torques ATCC 27756] gi|145846472|gb|EDK23390.1| hypothetical protein RUMTOR_02385 [Ruminococcus torques ATCC 27756] Length = 266 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/270 (33%), Positives = 148/270 (54%), Gaps = 12/270 (4%) Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + +++ EA++L + GV E+ L+ Q + GK L GEKC L+ L +I G+ +R Sbjct: 1 MERLIKEAKELAEQGVKELILVAQETTLY-GKDLYGEKC-LHRLVEELCKIAGIRWIRIL 58 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P +++D LI+ + YL LP+Q SD ILK M RR + E I+ ++R Sbjct: 59 YCYPEEITDELIEVIKKEPKVCHYLDLPIQHASDSILKRMGRRTSKQELTDIVKKLRKEI 118 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PDI + + I GFPGET+D M VD++ + + F YSP TP + M +Q+ E V Sbjct: 119 PDICLRTTLITGFPGETEDQHEELMQFVDEMEFDRLGVFTYSPEEDTPAAVMPDQIAEEV 178 Query: 387 KAERLLCLQKKLREQQVSFNDA--CVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV- 439 K ER L + +Q+++F++A +G+ + V+IE ++ VGR+ P + ++ Sbjct: 179 KEERQADLME--LQQEIAFDNAENMIGREMLVMIEGKVADENAYVGRTYRDAPNVDGLIF 236 Query: 440 LNSKNHNI-GDIIKVRITDVKISTLYGELV 468 +N++ I GD KV+IT L GEL+ Sbjct: 237 INTEEELISGDFAKVKITGALEYDLIGELL 266 >gi|255009413|ref|ZP_05281539.1| putative oxidoreductase [Bacteroides fragilis 3_1_12] gi|313147172|ref|ZP_07809365.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135939|gb|EFR53299.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 432 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 115/450 (25%), Positives = 213/450 (47%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ GY+ + + ++ V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEQLMRQLEEAGYDVTHDSEKPTGEIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE G+L + V GC+++ +E+ P V+ G + L + L +A Sbjct: 66 -LEFAQEKEEGNLEKLFVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGKA---- 120 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER Y A+L I EGCD+ C++C +P G +SR + Sbjct: 121 ------YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE R L+ NGV E ++ Q + + G+D +K +L+ +SEI G+ +R Sbjct: 168 EEILDEVRYLVSNGVKEFQVIAQELTYY---GVDLYKKQMLPELIERVSEIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P + L + + D + Y+ + +Q SD +L+ M R T + ++I++ R Sbjct: 225 YAYPAHFPEDLFRVMRERDNVCKYMDIALQHISDNMLQRMRRHVTKEDTYRLIEQFRKEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385 P I + + +VG PGET++DF + V K+ + + +F YS GT +N + + + Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAANYEDSIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440 VK RL L + + + VG ++V+I++ E VGR SP + VL Sbjct: 345 VKQARLDELMDIQQGISAELSASKVGWQMKVIIDR--IEGDYYVGRTEFDSPEVDPEVLI 402 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468 + +G+ ++ + D L+ +++ Sbjct: 403 KCEGDSLRVGNFYQIEVIDSDEFDLFAKVI 432 >gi|283956827|ref|ZP_06374301.1| MiaB-like tRNA modifying enzyme YliG [Campylobacter jejuni subsp. jejuni 1336] gi|283791688|gb|EFC30483.1| MiaB-like tRNA modifying enzyme YliG [Campylobacter jejuni subsp. jejuni 1336] Length = 439 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 101/371 (27%), Positives = 182/371 (49%), Gaps = 21/371 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++ S GC N+ DS M YE + AD++++NTC + A ++ + Sbjct: 3 KLYLMSLGCNKNLVDSEIMLGRL--STYELCDEPSKADVLIVNTCGFIDSAKKES---IN 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I +L R K D L+VV GC+ Q EE+++ P V++ G Y R+ E++ + Sbjct: 58 AILDLHEQRKK---DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKK-- 112 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 ++ Y + +R I+ G AF+ I EGC++ C+FC +P +G SR Sbjct: 113 TNLFSNSTYLQSENSKR--IITGS-----NFHAFIKIAEGCNQKCSFCAIPSFKGKLKSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ ++ E + L+ G + + + Q+ +++ EK L+ + +IKG+ R Sbjct: 166 EINSIIAELKDLVARGYKDFSFIAQDTSSYLFD--KSEKDGLIRLIDEVEKIKGIRAARI 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P S+ LIK ++ + Y +P+Q SD +LK M R + +++++ ++S Sbjct: 224 LYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA 283 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ + + FIVG PGE++ DF + V G+ + F YS T +M EQV Sbjct: 284 -PNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDM-EQVSFK 341 Query: 386 VKAERLLCLQK 396 V +RL ++K Sbjct: 342 VINKRLKIIEK 352 >gi|153951587|ref|YP_001397915.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. doylei 269.97] gi|152939033|gb|ABS43774.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. doylei 269.97] Length = 416 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 104/410 (25%), Positives = 194/410 (47%), Gaps = 55/410 (13%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ F K++GC+ N+YD+ ++ + + YE +N + A +IV+N+C + A + S Sbjct: 1 MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQ 131 ++ N+ K+G + V++ GC A ++G+E+L + + +N +G + Sbjct: 59 YV-------NTMKKKG--IKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAK 109 Query: 132 T-YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 T +Y L L +D D E + AF+ IQEGCD C Sbjct: 110 TSFYELGNL--------NFIDKDIVCE--------------YENHTKAFVKIQEGCDFAC 147 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 ++C++P RG S ++ + L NG EI L G N+ ++ GL T L Sbjct: 148 SYCIIPSVRGKSRSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTTLGKL 203 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L + +I G+ R+R + P + + ++ D L +LH+ +Q S+++L+ M RR Sbjct: 204 LQKMGQISGIKRIRLGSLEPAQLDESFLEIL-DETWLERHLHIALQHTSEKMLRIMRRRS 262 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 ++ + I S A+ +DFIV PGE+++ ++ + + +F +SPR Sbjct: 263 HTDNDLKLFNTIAS--KGYALGTDFIVAHPGESEELWQEALKKFKEFPLTHIHAFIFSPR 320 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIE 419 T + M + ++ + ERL L+ + + F Q+ +EVL+E Sbjct: 321 NNTHSATMKDVINGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVLVE 368 >gi|239944734|ref|ZP_04696671.1| hypothetical protein SrosN15_27314 [Streptomyces roseosporus NRRL 15998] gi|239991198|ref|ZP_04711862.1| hypothetical protein SrosN1_28096 [Streptomyces roseosporus NRRL 11379] Length = 466 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 120/426 (28%), Positives = 189/426 (44%), Gaps = 54/426 (12%) Query: 50 SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109 + G++ V DAD+ V+NTC E A + L +LK+ G VV GC+ Sbjct: 3 ADGWDLVEDASDADVAVVNTCGFVEAAKKDSVDALLEANDLKD----HGRTQAVVAVGCM 58 Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--------------------------- 142 A+ G+++ P + V+G Y + + L+ Sbjct: 59 AERYGKDLAEALPEADGVLGFDDYADISDRLQTILNGGIHASHTPRDRRKLLPISPAERQ 118 Query: 143 ----ARFGKRVVDTDYSVEDKFERLSIVDGG---YNRKRGVTAFLTIQ--EGCDKFCTFC 193 A G + ED E ++ V G R+ G + +++ GCD+ C+FC Sbjct: 119 DAAVALPGHAQETPAPAPEDLPEGVAPVSGPRAPLRRRLGTSPVASVKLASGCDRRCSFC 178 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 +P RG ISR S V+ E R L + GV E+ L+ +N N GK L G+ LL Sbjct: 179 AIPSFRGSFISRRPSDVLQETRWLAEQGVKEVMLVSEN-NTSYGKDL-GDIRLLETLLPE 236 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 L+++ G+ R+R + P +M LI + PY L Q S +L++M R Sbjct: 237 LADVDGIERIRVSYLQPAEMRPGLIDVLTSTPKVAPYFDLSFQHSSPSVLRTMRRFGDTD 296 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-----TMDLVDKIGYAQAFSFKYS 368 + +++D IRS P S+FIVGFPGET+ D T +D IG F YS Sbjct: 297 RFLELLDTIRSKAPQAGARSNFIVGFPGETEADLAELERFLTGARLDAIGV-----FGYS 351 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKEKGK 427 GT ++D +V AERL + + E + VG+ ++VL+E ++ G+ Sbjct: 352 DEEGTEAVGYENKLDADVIAERLAHISQLAEELTSQRAEERVGETLQVLVESVESEDDGE 411 Query: 428 L-VGRS 432 + +GR+ Sbjct: 412 VAIGRA 417 >gi|317180090|dbj|BAJ57876.1| hypothetical protein HPF32_0294 [Helicobacter pylori F32] Length = 418 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 108/393 (27%), Positives = 188/393 (47%), Gaps = 41/393 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSMTLEE----QEADIIIINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260 S +++++ L GV E+ L G NV ++ + KG + L+ LS+I GL Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQIAGL 214 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + + + D L +LH+ +Q D +L+ MNRR+ A R++++ Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLEKMNRRNRAKSDRELLE 273 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 I S + AI +DFIVG PGE+ F+ ++ + F Y+ R TP S M + Sbjct: 274 AIAS--KNFAIGTDFIVGHPGESGSVFKEAFKNLESLPLTHIHPFIYNKRKDTPSSLMTD 331 Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406 V +RL ++ K R+ Q+ N Sbjct: 332 SVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364 >gi|284992324|ref|YP_003410878.1| MiaB-like tRNA modifying enzyme YliG [Geodermatophilus obscurus DSM 43160] gi|284065569|gb|ADB76507.1| MiaB-like tRNA modifying enzyme YliG [Geodermatophilus obscurus DSM 43160] Length = 475 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 115/420 (27%), Positives = 194/420 (46%), Gaps = 49/420 (11%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRI 87 V + GC N DS + + GY V + AD +++NTC E A + V + L Sbjct: 13 VVTLGCARNEVDSEELAGRLAAGGYRLVEDAEGADAVLVNTCGFIESAKKDSVDAVLAAT 72 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 + +R VV GC+A+ G E+ P V+ G Y + + L+ G+ Sbjct: 73 DS--GAR--------VVAVGCMAERYGSELAGALPEATVL-GFDDYTAIGDRLDDVLTGR 121 Query: 148 RVVDTD---------YSVEDKFERLSIVD-------GGYNRKR---GVTAFLTIQEGCDK 188 ++ D S D+ ++ +D G R+R G +A L + GCD+ Sbjct: 122 PLIPHDPRDRRTLLPISPVDRSAAVTALDAPAIPGHGWLQRRRLASGPSAALKLASGCDR 181 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248 C FC +P RG +SR ++V+ EA+ L GV E+ L+ +N ++ GK L G+ Sbjct: 182 RCAFCAIPAFRGSFVSRPPAEVLGEAQWLASQGVTELVLVSENSTSY-GKDL-GDLRHLE 239 Query: 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 LL L+ ++G+ R+R P ++ L++ D + PY L Q S +L+ M R Sbjct: 240 RLLPQLAAVEGIARVRVAYLQPAELRPGLLEVIAATDGIAPYFDLSFQHSSPTLLRRMRR 299 Query: 309 RHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD--------FRATMDLVDKIGYA 360 ++ +IDR R++ P ++ I+GFPGET+DD +D V GY+ Sbjct: 300 FGGTDDFLALIDRARALAPAAGFRTNVILGFPGETEDDVAELEHFLVEGRLDAVGVFGYS 359 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 + + +G PG L+Q + +V+ R+ L ++L Q+ +G +EVL+ + Sbjct: 360 DE---EGTEAMGLPGK--LDQAEIDVRVRRITDLVEELTAQRAEDR---LGDRVEVLLTE 411 >gi|109947136|ref|YP_664364.1| hypothetical protein Hac_0545 [Helicobacter acinonychis str. Sheeba] gi|109714357|emb|CAJ99365.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 418 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 106/374 (28%), Positives = 184/374 (49%), Gaps = 32/374 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E ++AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----NEADIIIINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMVRLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINTLLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S +++++ L GV E+ L G NV ++ G D E + L+ LS+I GL Sbjct: 160 ARSFEERKILEQVGLLCAKGVQEVVLTGTNVGSY---GKDRE-SNIARLIKKLSQIVGLK 215 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++++ Sbjct: 216 RIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRVKSDRELLEV 274 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I S + AI +DFIVG PGE++ F + ++ + F YS R TP S M + Sbjct: 275 IAS--KNFAIGTDFIVGHPGESESVFEKAFENLEGLPLTHIHPFIYSKRKDTPSSLMHDS 332 Query: 382 VDENVKAERLLCLQ 395 V V +RL ++ Sbjct: 333 VSLEVSKKRLNAIK 346 >gi|159479894|ref|XP_001698021.1| hypothetical protein CHLREDRAFT_120503 [Chlamydomonas reinhardtii] gi|158273820|gb|EDO99606.1| predicted protein [Chlamydomonas reinhardtii] Length = 420 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 106/409 (25%), Positives = 193/409 (47%), Gaps = 37/409 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC NV D + G+E + +++D I++NTC E A + + +L Sbjct: 3 ALGCPKNVVDGEVLLGDLARAGFEVTDDHEESDAIIVNTCAFVEDAKSESLEAIVEAASL 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++G +VV GC+AQ ++ P ++VVG Q+Y L L+++ Sbjct: 63 N----EDGRRRKLVVTGCLAQRYSSQLAADLPEADLVVGFQSYGNLAASLQKS------- 111 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR--GIEISRSLS 208 +E E L+I + +A+L + EGC+ CTFC +P R + LS Sbjct: 112 ---MGMEVTPEALAIAEA--------SAYLRVAEGCNHACTFCAIPGFRCPTLTCPTDLS 160 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 ++ ++ + +A R G D + LL L +++GL +R + Sbjct: 161 RLQAHTHTHTHTSFTHAHIVHTHTHARRRDGRD-----LAQLLRELGKLEGLRWIRILYA 215 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P +D LI + + YL +P+Q ++ L +MNR + + ++ ++R P Sbjct: 216 YPSYFNDELIDEIANNPKVCKYLDMPLQHIANLTLLAMNRPPKEHTTK-LLAKLRERIPG 274 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD---EN 385 +A+ + FI GFPGE+D+ R +D V + + F +S GTP + M EQV Sbjct: 275 LALRTTFISGFPGESDEQHRELVDFVKTFKFERMGCFAFSEEDGTPAATMPEQVPRRQRE 334 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 + + L+ LQ+++ E+ + + VG+ ++VL+E + + G L+GR+ W Sbjct: 335 RRRDELISLQQRIGEE---WAEGLVGREVDVLVEGY-NDDGWLIGRTQW 379 >gi|254778988|ref|YP_003057093.1| putative MiaB-like tRNA modifying enzyme [Helicobacter pylori B38] gi|254000899|emb|CAX28835.1| Putative MiaB-like tRNA modifying enzyme [Helicobacter pylori B38] Length = 418 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 110/395 (27%), Positives = 187/395 (47%), Gaps = 45/395 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+IV+N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIVINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258 S +++++ L GV E+ L G NV ++ RG + + L+ LS+I Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++ Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++ I S + AI +DFIVG PGE+ F ++ + F YS R TP S M Sbjct: 272 LETIAS--KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329 Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406 L+ V +RL ++ K R+ Q+ N Sbjct: 330 LDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLN 364 >gi|163737731|ref|ZP_02145148.1| hypothetical protein RGBS107_19408 [Phaeobacter gallaeciensis BS107] gi|161389257|gb|EDQ13609.1| hypothetical protein RGBS107_19408 [Phaeobacter gallaeciensis BS107] Length = 473 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 126/462 (27%), Positives = 204/462 (44%), Gaps = 57/462 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 38 SLGCPKALVDSERILTRLRAEGYGVSPDYSGADAVIVNTCGFLDSAKAESLEAIGEA--- 94 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ AE + I P + V GP Y ++V+ Sbjct: 95 ----LKENGK--VIVTGCLG-AEPDYIRAHHPRILAVTGPHQY-------------EQVL 134 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D ++ + + L G R + +L I EGC+ C FC++P RG SR Sbjct: 135 DAVHAAVPPSPNPYVDLLPAAGVKLTPRHFS-YLKISEGCNHKCKFCIIPDMRGKLASRP 193 Query: 207 LSQVVDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGE-KCTFSDLLYSL 254 V+ EA KL+D GV E+ ++ Q+ VN W+ DGE + DL L Sbjct: 194 AHAVLREAEKLVDAGVRELLVISQDTSAYGLDRKYDVNPWK----DGEVRSHIQDLSREL 249 Query: 255 SEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRR 309 + VRL Y +P LI D D L+PYL +P Q +L+ M R Sbjct: 250 GRLAPADELWVRLHYVYPYPHVRE--LIPLMADPDNALLPYLDIPFQHAHPDVLRRMARP 307 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 A + I+ R+ PDI + S FIVG+PGET+ +F+ +D +D+ + FKY Sbjct: 308 AAAAKTLDEINAWRATCPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYEN 367 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKG 426 G +N+ + V E VK +R +K + + A VGQ ++V+ I++ G Sbjct: 368 VDGARSNNLADHVPEEVKQDRWDRFMEKAQAISEAKLAAKVGQTMQVIVDDIDEDGIATC 427 Query: 427 KLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465 + +P + + ++ +G+++ V + + L+G Sbjct: 428 RTKADAPEIDGNLFIDEDTDGLQVGELVTVEVDEAGEYDLWG 469 >gi|194336812|ref|YP_002018606.1| MiaB-like tRNA modifying enzyme YliG [Pelodictyon phaeoclathratiforme BU-1] gi|238066432|sp|B4SBD5|RIMO_PELPB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|194309289|gb|ACF43989.1| MiaB-like tRNA modifying enzyme YliG [Pelodictyon phaeoclathratiforme BU-1] Length = 431 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 127/459 (27%), Positives = 215/459 (46%), Gaps = 43/459 (9%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK-V 80 + + F+ S GC N DS R+ + G + D+AD I++NTC E A E+ + Sbjct: 1 MTTHKLFLLSLGCSKNTVDSERLMAQAEASGIIFTETADEADTILINTCGFIEDAKEESI 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 L I + EG + V GC+ + E+ V+ G + LPE+L Sbjct: 61 TEILAAI-----DKKSEGTIQRLYVMGCLTELYRNELKEEMAEVDGFFGTR---ELPEIL 112 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 A G E+ ++ S++ + +L I EGC++ C+FC +P RG Sbjct: 113 --AALGAAYH------EELYDHRSLLTPPH------YTYLKIAEGCNRSCSFCSIPKIRG 158 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-G 259 S+ + Q++ EA L ++GV E+ ++ Q+++ + G G K +DL+ LS++ Sbjct: 159 RYRSQPVEQLLREAILLKNSGVKELNIISQDISMF-GYDTMG-KSMLNDLVLRLSDMAFD 216 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +RL Y ++P + +I+ + + + YL +P+Q +DRILKSMNR E Q+I Sbjct: 217 WIRLLY--AYPVNFPLEVIETMRERENICNYLDIPLQHCNDRILKSMNRGINKQESIQLI 274 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + +R PDI + + I G+PGET ++F ++ V+ + + F Y P + Sbjct: 275 ETVREKNPDIRLRTTMIAGYPGETREEFDELLEFVEANRFDRLGCFPYCHEEYAPSFALE 334 Query: 380 EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQ 436 + V K +R L+ LQ+ + + + N G+ I VLI++ E+G GR+ + Sbjct: 335 DNVSAEEKQDRVAELMELQESVSQDK---NRDFEGKEITVLIDQ--VEEGMAFGRTEYDA 389 Query: 437 SVVLNSKNHNIGD-------IIKVRITDVKISTLYGELV 468 V N GD RITD L GE++ Sbjct: 390 PEVDNECMLETGDFQVEPGMFCHARITDSTPFDLVGEVI 428 >gi|326316483|ref|YP_004234155.1| MiaB-like tRNA modifying enzyme YliG [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373319|gb|ADX45588.1| MiaB-like tRNA modifying enzyme YliG [Acidovorax avenae subsp. avenae ATCC 19860] Length = 463 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 128/487 (26%), Positives = 211/487 (43%), Gaps = 74/487 (15%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 +S ++ P+ FV S GC + DS + ++GY+ + + ADL+++NTC Sbjct: 1 MSDVLSPTKTPKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFI 59 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE---EILRR-SPIVNVVVG 129 + A ++ +G + E G V+V GC+ GE ++R P V V G Sbjct: 60 DDAVKESLDTIGEA-------LAENGK--VIVTGCLGARAGEGGGNLVREMHPSVLAVTG 110 Query: 130 PQTYYRLPELLERARFGKRVVDTDYS----VEDKFERLSIVDGGYNRKRGVT------AF 179 P + V+D + D F + +V G + G+ A+ Sbjct: 111 PHAT-------------QEVMDAVHQNLPKPHDPF--IDLVPGNFGVA-GIKLTPKHYAY 154 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA----- 234 L I EGC+ CTFC++P RG +SR + V+ EA+ L + GV E+ ++ Q+ +A Sbjct: 155 LKISEGCNHRCTFCIIPSMRGDLVSRPVGDVLSEAKALFEGGVKELLVISQDTSAYGVDV 214 Query: 235 ------WRGKGLDGEKCTFSDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDL 284 W GK + K +L+ +L EI VRL Y +P A G + Sbjct: 215 KYRTGFWDGKPV---KTRMLELVQTLGEIAEPYGAWVRLHYVYPYPSVDEVIPFMATGKI 271 Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344 +PYL +P Q +L+ M R + + I R R P++ + S FI GFPGET+ Sbjct: 272 ---LPYLDVPFQHSHPDVLRRMKRPASGERNLERIQRWREACPELVVRSTFIAGFPGETE 328 Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404 ++F+ +D + + +A F YS G + + + V+ ER E + Sbjct: 329 EEFQHLLDFLREAQIDRAGCFAYSDVNGAVANELPGMLPMEVREERRARFMAVAEEVSIE 388 Query: 405 FNDACVGQIIEVLIEKHGKEKGKL--VGRS----PWLQSVVL------NSKNHNIGDIIK 452 VG ++VL++ H G+ GRS P + VV SK +G+ + Sbjct: 389 RLRRRVGATMQVLVD-HAPALGRKGGTGRSYADAPEIDGVVHLLPPEKISKQLKVGEFTR 447 Query: 453 VRITDVK 459 +I V+ Sbjct: 448 AQIVGVQ 454 >gi|239982669|ref|ZP_04705193.1| hypothetical protein SalbJ_24778 [Streptomyces albus J1074] Length = 472 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 121/433 (27%), Positives = 189/433 (43%), Gaps = 52/433 (12%) Query: 40 DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99 DS + + G++ V + AD+ V+NTC E A + L +LK +G Sbjct: 2 DSEELAGRLEADGWQLVEDAEAADVAVVNTCGFVEAAKKDSVDALLEANDLK----AQGR 57 Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVG------------------------PQTYYR 135 VV GC+A+ G+E+ P + V+G P+ + Sbjct: 58 TQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRLQTILGGGIHASHTPRDRRK 117 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDG---------GYNRKRGVTAFLTIQ--E 184 L + R V ++ E + DG R+ G + +++ Sbjct: 118 LLPISPAERQDSAVALPGHAQEPAAAPADLPDGLAPASGPRAPLRRRLGTSPVASVKLAS 177 Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244 GCD+ C+FC +P RG ISR S V+ E R L GV EI L+ +N N GK L G+ Sbjct: 178 GCDRRCSFCAIPSFRGSFISRRPSDVLQETRWLAGQGVKEIMLVSEN-NTSYGKDL-GDI 235 Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 LL L+E+ G+ R+R + P +M LI + PY L Q + +L+ Sbjct: 236 RLLETLLPELAEVDGIERVRVSYLQPAEMRPGLIDVLTSTPKVAPYFDLSFQHSAPGVLR 295 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-----TMDLVDKIGY 359 +M R + ++++IR+ P+ + S+FIVGFPGE++ D T +D IG Sbjct: 296 AMRRFGDTDRFLGLLEQIRAKAPEAGVRSNFIVGFPGESEADVAELERFLTGARLDAIGV 355 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 F YS GT + ++ E AERL + + E D VG+ +EVL+E Sbjct: 356 -----FGYSDEDGTEAAGYEGKLPEEEVAERLARVSRLAEELVSQRADERVGETVEVLVE 410 Query: 420 KHGKEKGKLVGRS 432 +E+G VGR+ Sbjct: 411 SVDEEEGA-VGRA 422 >gi|332300307|ref|YP_004442228.1| Ribosomal protein S12 methylthiotransferase rimO [Porphyromonas asaccharolytica DSM 20707] gi|332177370|gb|AEE13060.1| Ribosomal protein S12 methylthiotransferase rimO [Porphyromonas asaccharolytica DSM 20707] Length = 443 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 117/447 (26%), Positives = 204/447 (45%), Gaps = 28/447 (6%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEK 79 ++ + V S GC N+ DS + GY + ++ ++ V+NTC + A E+ Sbjct: 1 MIANQIDVISLGCSKNLVDSDALMRRLAQYGYTLRHDPEELTGEIAVVNTCGFIQAAQEE 60 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 + + + K KEG + V GC+ + EE+ P V+ + G + +L Sbjct: 61 SINLILSLIEAK----KEGRIRAIYVMGCLGERFREELTAELPEVDKIYGKYDWKQLITD 116 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 L A Y S+ Y +++ I EGCD+ C++C +P Sbjct: 117 LGPALSADDATPLSYRTPPP----SVTPQHY-------SYIKISEGCDRTCSYCAIPLIT 165 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G SR + ++V E K + G E ++ Q+ + + G L E+ + LL L++++G Sbjct: 166 GRHHSRPMEEIVREIEKRVATGCREFQIIAQD-STYYGVDLYQEQA-IATLLDRLAQVEG 223 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 + LR ++P L+ D + YL L +Q S+ +L+ M R+ T E ++ Sbjct: 224 VHWLRLHYAYPNHFPIELLDVMAKHDNICKYLDLALQHSSNHMLQLMRRQITREETIALL 283 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNM 378 +RIR P IA+ + +VG PGETD+DF +D V ++ + + +F+YS GT + Sbjct: 284 ERIRKQVPGIALRTTMMVGHPGETDEDFADLLDFVSQMRFERLGAFQYSHEEGTYAYKHY 343 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPW 434 + V VK ER L S N VG +EV++++ +E+ VGR SP Sbjct: 344 QDDVPPEVKQERYDALMSIQETISTSINSRKVGTTLEVVVDR--EEEDYYVGRTQYDSPE 401 Query: 435 LQSVVLNSKNH--NIGDIIKVRITDVK 459 + V+ S + +G + IT ++ Sbjct: 402 VDGEVILSSDSPLRVGSFYQAEITGIE 428 >gi|317181628|dbj|BAJ59412.1| hypothetical protein HPF57_0338 [Helicobacter pylori F57] Length = 418 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 109/395 (27%), Positives = 188/395 (47%), Gaps = 45/395 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258 S +++++ L GV E+ L G NV ++ RG + + L+ LS+I Sbjct: 160 ARSFEERKILEQVSLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R + P + + + D L +LH+ +Q D +L+ MNRR+ A R++ Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRAKSDREL 271 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++ I S + AI +DFIVG PGE++ F ++ + F YS R TP S M Sbjct: 272 LEVIAS--KNFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329 Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406 + V +RL ++ K R+ Q+ N Sbjct: 330 TDSVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364 >gi|317013730|gb|ADU81166.1| hypothetical protein HPGAM_01600 [Helicobacter pylori Gambia94/24] Length = 418 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 109/393 (27%), Positives = 187/393 (47%), Gaps = 41/393 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKIQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260 S +++++ L GV E+ L G NV ++ + KG + L+ LS+I GL Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQITGL 214 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++++ Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLE 273 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 I S + AI +DFIVG PGE++ F ++ + F YS R TP S M + Sbjct: 274 IIAS--KNFAIGTDFIVGHPGESESVFEKAFKNLEGLPLTHIHPFIYSKRKDTPSSLMTD 331 Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406 V V +RL ++ K R+ Q N Sbjct: 332 SVSLEVSKKRLNAIKDLIFHKNKAFRQLQFKLN 364 >gi|315586279|gb|ADU40660.1| possible 2-methylthioadenine synthase [Helicobacter pylori 35A] Length = 418 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 109/393 (27%), Positives = 187/393 (47%), Gaps = 41/393 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260 S +++++ L GV E+ L G NV ++ + KG L+ LS+I GL Sbjct: 160 ARSFEERKILEQVSLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIVRLIKKLSQIAGL 214 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + + + D L +LH+ +Q D +L+ MNRR+ A R++++ Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRAKSDRELLE 273 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 I S + AI +DFIVG PGE++ F ++ + F YS R TP S M + Sbjct: 274 VIAS--KNFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331 Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406 V +RL ++ K R+ Q+ N Sbjct: 332 SVSLEDSKKRLNAIKDLISHKNKAFRQLQLKLN 364 >gi|317177100|dbj|BAJ54889.1| hypothetical protein HPF16_0292 [Helicobacter pylori F16] Length = 418 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 108/393 (27%), Positives = 188/393 (47%), Gaps = 41/393 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSSVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + ++ V G ++ LL E Sbjct: 58 YAKKMAQLNKE---------VLFTGCGVKTQGKELFEKG-LLKGVFGHDNKEKINTLLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260 S +++++ L GV E+ L G NV ++ + KG + L+ LS+I GL Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQIAGL 214 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++++ Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLE 273 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 I S + AI +DFIVG PGE++ F ++ + F YS R TP S M + Sbjct: 274 VIAS--KNFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331 Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406 V +RL ++ K R+ Q+ N Sbjct: 332 SVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364 >gi|332673126|gb|AEE69943.1| possible 2-methylthioadenine synthase [Helicobacter pylori 83] Length = 418 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 109/393 (27%), Positives = 189/393 (48%), Gaps = 41/393 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L D V+ GC + +G+E+ + ++ V G ++ LL E Sbjct: 58 YAKKMVRL---------DKEVLFTGCGVKTQGKELFEKG-LLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260 S +++++ L GV E+ L G NV ++ + KG + L+ LS+I GL Sbjct: 160 ARSFEERKILEQVSLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQIAGL 214 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++++ Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRIKSDRELLE 273 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 I S + AI +DFIVG PGE++ F ++ + F YS R TP S M + Sbjct: 274 VIAS--KNFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331 Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406 V +RL ++ K R+ Q+ N Sbjct: 332 SVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364 >gi|326917127|ref|XP_003204853.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like, partial [Meleagris gallopavo] Length = 327 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 95/299 (31%), Positives = 149/299 (49%), Gaps = 26/299 (8%) Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162 VV+AGCV QA+ + + ++G Q R+ E++E G V +D +R Sbjct: 9 VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETIKGHSVRLLGQK-KDNGKR 64 Query: 163 L--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220 L + +D RK + ++I GC CT+C + RG S + ++VD A++ Sbjct: 65 LGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRAKQSFQE 124 Query: 221 GVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPR 271 GVCEI L ++ A+ R G D LL+ L E G+ Y H Sbjct: 125 GVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEAIPEGAMLRLGMTNPPYILEHLE 179 Query: 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 +M+ L + + +LH+PVQS SD +L M R + ++R+++D ++ P I I Sbjct: 180 EMAKIL-----NHPRVYAFLHIPVQSASDSVLMDMKREYCVADFRRVVDFLKEKVPGITI 234 Query: 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 ++D I GFPGETD+DF+ TM LV++ + F ++ PR GTP + M QV VK +R Sbjct: 235 ATDIICGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPGTPAAKM-HQVPAAVKKQR 292 >gi|118373032|ref|XP_001019710.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein [Tetrahymena thermophila] gi|89301477|gb|EAR99465.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein [Tetrahymena thermophila SB210] Length = 574 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 120/459 (26%), Positives = 207/459 (45%), Gaps = 63/459 (13%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q +VK++GC N+ DS M GY + DA LI++N+C ++ + + +F+ Sbjct: 74 QNVYVKTFGCSHNISDSEFMMGQLAEYGYNLCSDPKDAHLILVNSCTVKNPSQD---AFM 130 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTYYRLPELLER 142 ++ K+ + +VVAGCV Q + R P + V+G R+ E++E Sbjct: 131 TIVKTYKHKKKP------IVVAGCVPQGD-----RNIPGLEDVSVIGISQIDRVVEVVEE 179 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +V RL K+ + + + C CT+C + RG Sbjct: 180 TLKGNKV------------RLY-------GKKTLPSLDLPKIRCLGSCTYCKTKHARGKL 220 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257 S +V+ + + + GV EI L ++ A+ R G D S LL + E+ Sbjct: 221 GSYQPEAIVNRVKTVCEEGVKEIWLTSEDTGAYGRDIGTD-----ISQLLRLIVEVLPND 275 Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 G+ Y H ++MS L + +LH+PVQ+ ++ +L++MNR +T Sbjct: 276 VMLRVGMTNPPYILEHLQNMSTILRHPR-----VFSFLHIPVQAANNTVLENMNREYTCE 330 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 E+ Q+ D + P++ I++D I GFPGET+ F T+ LVDK + ++ PR GT Sbjct: 331 EFEQVCDYLLKNVPNMTIATDIICGFPGETNAQFDDTLKLVDKYKFPILNISQFYPRPGT 390 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKG--KLV 429 M + ++VK KK+ E +F D +G + I +KG +LV Sbjct: 391 AAMKMKKVPSQDVKMR-----SKKITELFDTFKRWDHLLGTTQRIWINDKEDKKGVLQLV 445 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 G + V+L + +G + +++T V + GE++ Sbjct: 446 GHTKQYAKVMLPFEEELLGKSVIIKVTKVLTWHIEGEII 484 >gi|207092233|ref|ZP_03240020.1| hypothetical protein HpylHP_04483 [Helicobacter pylori HPKX_438_AG0C1] Length = 418 Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 108/395 (27%), Positives = 187/395 (47%), Gaps = 45/395 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSTVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258 S +++++ L GV E+ L G NV ++ RG + + L+ LS+I Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------AQLIKKLSQIA 212 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++ Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +++I S + AI +DFIVG PGE+ F ++ + F YS R TP S M Sbjct: 272 LEKIAS--KNFAIGTDFIVGHPGESKSVFEKAFKNLEDLPLTHIHPFIYSKRKDTPSSLM 329 Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406 + V +RL ++ K R+ Q+ N Sbjct: 330 TDSVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364 >gi|255693887|ref|ZP_05417562.1| 2-methylthioadenine synthetase [Bacteroides finegoldii DSM 17565] gi|260620292|gb|EEX43163.1| 2-methylthioadenine synthetase [Bacteroides finegoldii DSM 17565] Length = 434 Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 118/456 (25%), Positives = 216/456 (47%), Gaps = 39/456 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYS 82 +R + + GC N+ DS ++ GY + ++ ++ V+NTC A E+ + Sbjct: 4 RRIDIITLGCSKNLVDSEQLIRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESIN 63 Query: 83 FLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L+ + KE GDL + V GC+++ +E+ P V+ G + ELL+ Sbjct: 64 MI-----LEFAERKEEGDLKKLFVMGCLSERYLKELAIEIPQVDKFYGK---FNWKELLQ 115 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G+ D Y ER Y A+L I EGCD+ C++C +P G Sbjct: 116 D--LGQTYHDELY-----IERTLTTPRHY-------AYLKISEGCDRKCSYCAIPIITGR 161 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 IS+ + +++DE R L+ GV E ++ Q + + G+D +K +L+ +S+I G+ Sbjct: 162 HISKPIDEILDEVRYLVSQGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISDIPGV 218 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++P L + + D + Y+ + +Q SD++L+ M R+ T + ++I+ Sbjct: 219 EWIRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDKMLRLMRRQVTKEDTYKLIE 278 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + R P I + + +VG PGET++DF + V K+ + + +F YS GT + E Sbjct: 279 QFRKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAEAYE 338 Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435 + + VK RL L + + A +G+ ++++I++ E +GR SP + Sbjct: 339 DSIPQEVKQARLDELMDIQQGISAELSAAKIGKQMKIIIDR--LEGDYYIGRTEFDSPEV 396 Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468 VL + K IG +V + D LY +++ Sbjct: 397 DPEVLINSSEKELEIGQFYQVEVIDADDFDLYAKVI 432 >gi|208434231|ref|YP_002265897.1| hypothetical protein HPG27_264 [Helicobacter pylori G27] gi|208432160|gb|ACI27031.1| hypothetical protein HPG27_264 [Helicobacter pylori G27] Length = 418 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 110/395 (27%), Positives = 188/395 (47%), Gaps = 45/395 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+IV+N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIVINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L D V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARL---------DKEVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258 S +++++ L GV E+ L G NV ++ RG + + L+ LS+I Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++ Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +++I S + AI +DFIVG PGE+ F ++ + F YS R TP S M Sbjct: 272 LEKIAS--KNFAIGTDFIVGHPGESKSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329 Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406 + V +RL ++ K R+ Q+ N Sbjct: 330 HDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLN 364 >gi|126733291|ref|ZP_01749038.1| hypothetical protein RCCS2_04029 [Roseobacter sp. CCS2] gi|126716157|gb|EBA13021.1| hypothetical protein RCCS2_04029 [Roseobacter sp. CCS2] Length = 506 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 112/407 (27%), Positives = 183/407 (44%), Gaps = 49/407 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY A+ +++NTC + A + +G Sbjct: 72 SLGCPKALVDSERILTRLRAEGYAISPDYAGAEAVIVNTCGFLDSAKAESLDAIGEA--- 128 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ AE + I P + V GP Y ++V+ Sbjct: 129 ----LQENGK--VIVTGCLG-AEPDYIRDHHPQILAVTGPHQY-------------EQVL 168 Query: 151 DTDYS----VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D ++ D F L G R + +L I EGC+ C FC++P RG SR Sbjct: 169 DAVHANVPPAPDPFIDLLPASGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGRLASRP 227 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLS 255 V+ EA KL+D GV E+ ++ Q+ +A+ GLD + + +DL L Sbjct: 228 AHAVLREAEKLVDAGVKELLVISQDTSAY---GLDRKYDLSPWKDGQVRSHITDLTRELG 284 Query: 256 EIKGLVRLRYTTSHP--RDMSDCLI-KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 ++ VRL Y +P RD+ + A+G ++PYL +P Q +L+ M R Sbjct: 285 QLGAWVRLHYVYPYPYVRDLIPIMADPANG----VLPYLDIPFQHSHPDVLRRMARPAAG 340 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I R+ PDI + S FIVG+PGET+ +F+ +D +D+ + F+Y G Sbjct: 341 AKTLDEIAAWRAQCPDITLRSTFIVGYPGETEAEFQHLLDWLDEAQLDRVGCFQYENVAG 400 Query: 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 + + V VK R K + + +A VG+ +EV+++ Sbjct: 401 ARSNALPNHVAAEVKQNRWDRFMAKAQAISEAKLEAKVGRTLEVIVD 447 >gi|261837731|gb|ACX97497.1| hypothetical protein KHP_0283 [Helicobacter pylori 51] Length = 418 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 108/393 (27%), Positives = 188/393 (47%), Gaps = 41/393 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + ++ V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-LLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260 S +++++ L GV E+ L G NV ++ + KG + L+ LS+I GL Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQIAGL 214 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++++ Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLE 273 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 I S + AI +DFIVG PGE++ F ++ + F YS R TP S M + Sbjct: 274 VIAS--KNFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331 Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406 V +RL ++ K R+ Q+ N Sbjct: 332 SVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364 >gi|254453567|ref|ZP_05067004.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Octadecabacter antarcticus 238] gi|198267973|gb|EDY92243.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Octadecabacter antarcticus 238] Length = 431 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 109/375 (29%), Positives = 172/375 (45%), Gaps = 45/375 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G N Sbjct: 3 SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLDAIGEALN- 61 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N + V+V GC+ AE + I P + V GP Y ++V+ Sbjct: 62 ENGK--------VIVTGCLG-AEPDYIREHHPRILAVTGPHQY-------------EQVL 99 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D ++ D F L G R + +L I EGC+ C FC++P RG SR Sbjct: 100 DAVHAAVPPSPDPFIDLLPASGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGKLQSRP 158 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKG 259 V+ EA KL++NGV E+ ++ Q+ +A+ G+D G + +DL L + G Sbjct: 159 AHAVLREAEKLVENGVRELLVISQDTSAY---GVDIKHAEDRGHRAHITDLARDLGSLGG 215 Query: 260 ----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 VRL Y +P + A G +++PYL +P Q S +L+ M R A + Sbjct: 216 DTKPWVRLHYVYPYPHVRQLIPLMADG---LILPYLDIPFQHASTDVLRRMARPAAAAKT 272 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 I R++ PDI + S FIVG+PGET+ +F+ +D +D+ + F+Y G Sbjct: 273 LDEITAWRAICPDITLRSTFIVGYPGETEAEFQVLLDWMDEAQLDRVGCFQYENVAGARS 332 Query: 376 SNMLEQVDENVKAER 390 + + + V VK ER Sbjct: 333 NALPDHVPAEVKQER 347 >gi|85706248|ref|ZP_01037343.1| RNA modification enzyme, MiaB-family protein [Roseovarius sp. 217] gi|85669412|gb|EAQ24278.1| RNA modification enzyme, MiaB-family protein [Roseovarius sp. 217] Length = 458 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 123/450 (27%), Positives = 199/450 (44%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G + Sbjct: 33 SLGCPKALVDSERILTRLRAEGYGISADYAGADAVIVNTCGFLDSAKAESLEAIGEALS- 91 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N R V+V GC+ AE I P V V GP Y ++ + + A Sbjct: 92 ENGR--------VIVTGCLG-AEPAYITGVHPRVLAVTGPHQYEQVLDAVHLAV------ 136 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L G R + +L I EGC+ C FC++P RG SR V Sbjct: 137 ---PPSPDPFIDLLPASGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGKLQSRPAHAV 192 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKGLVRL 263 + EA KL+++GV E+ ++ Q+ +A+ G+D G + +DL L + VRL Sbjct: 193 IREAAKLVESGVKELLVISQDTSAY---GVDIRHAEERGHRAHITDLARDLGSLGAWVRL 249 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y +P + A G +++PYL +P Q +L+ M R A I R Sbjct: 250 HYVYPYPHVRDLIPLMAEG---LVLPYLDIPFQHAHPEVLRRMARPAAAARTLDEIAAWR 306 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P+IA+ S FIVG+PGET+ +F+ +D +D+ + F+Y G + + + V Sbjct: 307 RDCPEIALRSTFIVGYPGETEAEFQVLLDWLDEAQLDRVGCFQYENVAGARSNALPDHVA 366 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKGKLVGRSPWLQSVVL 440 VK ER +K + + A VGQ +EV+ I+ G + +P + + Sbjct: 367 AEVKQERWDRFMEKAQAISEAKLAAKVGQRMEVIVDEIDADGIATCRTKADAPEIDGNLF 426 Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGEL 467 ++ +GDI+ V + + L+G L Sbjct: 427 IDEGTEGIAVGDIVTVVVDEAGEYDLWGRL 456 >gi|283850464|ref|ZP_06367752.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. FW1012B] gi|283574035|gb|EFC22007.1| RNA modification enzyme, MiaB family [Desulfovibrio sp. FW1012B] Length = 448 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 112/387 (28%), Positives = 173/387 (44%), Gaps = 46/387 (11%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+RF + + GC++N Y+S + + + G R + ADL+VL +C + +A + Sbjct: 18 PKRFCLVTLGCKVNQYESRALAEAWLGSGLVRTDDPAAADLVVLCSCAVTARAEAEG--- 74 Query: 84 LGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL--- 139 R L + ++ D VVV GC A V P + L L Sbjct: 75 ----RRLARNLVRAARDAARVVVTGCAA----------------TVSPDAFAGLGALAVP 114 Query: 140 ----LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 L R FG E F L++ GY+R R A + +Q+GC C++C+V Sbjct: 115 DKARLARDPFGPHTAAPRAPGE--FPDLAVT--GYDRAR---ALVKVQDGCSHGCSYCIV 167 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL- 254 P RG +SR L+ V+ E R+L+ G EI L G N+ + G+ L F DL+ L Sbjct: 168 PAARGPSVSRPLADVLAEVRRLLAAGHREIGLTGINLGHY-GRDL-APAMDFWDLVADLD 225 Query: 255 ----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 E G RLR + P ++ + ++ P+LH+ +QS +L +M RR Sbjct: 226 AALAPEHAGTARLRLGSLDPAMLTGRGLAVLAGSRLVCPHLHISLQSADPAVLTAMGRRP 285 Query: 311 TAYEYRQ-IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 E +D I P + + D + GFPGE++ F AT +D + A F YS Sbjct: 286 GDAEAVSFFVDSISREWPAMGLGLDLLTGFPGESEAAFAATAAFLDGLPATYAHVFPYSR 345 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQK 396 R GT + + Q+ VKA R L++ Sbjct: 346 RPGTRAAALPGQLPGPVKAGRARLLRE 372 >gi|259419341|ref|ZP_05743258.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] gi|259345563|gb|EEW57417.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] Length = 467 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 123/464 (26%), Positives = 211/464 (45%), Gaps = 57/464 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 33 SLGCPKALVDSERILTRLRAEGYGISADYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 89 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ AE + I P + V GP Y ++ + + +A Sbjct: 90 ----LKENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHQAV------ 136 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L G R + +L I EGC+ C FC++P RG SR V Sbjct: 137 ---PPSPDPFVDLLPATGVSLTPRHFS-YLKISEGCNHKCKFCIIPDMRGKLASRPGHAV 192 Query: 211 VDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGE-KCTFSDLLYSLSEIK 258 + EA KL+ GV E+ ++ Q+ VN W+ DGE + +DL +L E+ Sbjct: 193 LREAEKLVGAGVRELLVISQDTSAYGLDRKYDVNPWK----DGEIRSHITDLSRALGELA 248 Query: 259 G----LVRLRYTTSHP--RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 +RL Y +P R+M + + + ++PYL +P Q +L+ M R A Sbjct: 249 PADELWIRLHYVYPYPHVREMIPLMADPN---NAVLPYLDIPFQHAHPDVLRRMARPAAA 305 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 + I R + PD+ + S FIVG+PGET+ +F+ +D +D+ + FKY G Sbjct: 306 AKTLDEIRAWRDICPDMTLRSTFIVGYPGETETEFQHLLDWMDEAQLDRVGCFKYENVDG 365 Query: 373 TPGSNMLEQVDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVL---IEKHGKEKG 426 +++ + V + VK ER + + + E +++ A VGQ ++V+ I++ G Sbjct: 366 ARSNDLPDHVADEVKQDRWERFMAKAQAISEAKLA---AKVGQTLQVIVDDIDEDGIATC 422 Query: 427 KLVGRSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGEL 467 + +P + + ++ ++GD++ V + + L+G L Sbjct: 423 RTKADAPEIDGNLFIDDGTEGLSVGDLVTVEVDEAGEYDLWGAL 466 >gi|317484640|ref|ZP_07943543.1| MiaB family RNA modification enzyme [Bilophila wadsworthia 3_1_6] gi|316924114|gb|EFV45297.1| MiaB family RNA modification enzyme [Bilophila wadsworthia 3_1_6] Length = 465 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 105/394 (26%), Positives = 175/394 (44%), Gaps = 42/394 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P F + ++GC++N Y+S + + + ++ +AD+I+LNTC + A Sbjct: 4 APWTFCILTFGCKVNQYESQSVREAWQRMDGAETDAPAEADVILLNTCAVTANAVTDARQ 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + R++ +E + VV+AGC A+ ++ L P V VV RL + Sbjct: 64 AVRRLQ-------REAPGVPVVIAGCAAEVARKQ-LAALPGVLRVVEQDHKSRLLDAPPL 115 Query: 143 ARFGKRVVDTDYSVEDK--------------FERLSIVDGGYNRKRGVTAFLTIQEGCDK 188 F + + F I G+ R R V L +Q+GC Sbjct: 116 VLFAEEAAGSATPFPSSPAEAAARAATRDRTFPPFHI--DGFRRARPV---LKVQDGCSH 170 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-F 247 C +C+VP TRG SR + E R+L++ G EI + G N+ R + E C F Sbjct: 171 GCAYCIVPLTRGPARSRPPKDCLAEMRRLLEAGYREIMISGINL---RQYAMRDEGCRDF 227 Query: 248 SDLL----------YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297 DLL + R R ++ P +++ I + ++ P+LHL +QS Sbjct: 228 WDLLSYLDRELAPEWGSGARPDPARFRISSVEPAQLTERGIATLAETSMVCPHLHLSLQS 287 Query: 298 GSDRILKSMNRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 GS +LK+M R H T ++ + + P + +D ++GFPGET+ T+++V Sbjct: 288 GSADVLKAMRRGHYTPEALLSAVEGVAKLWPRFGLGADILMGFPGETEAHVLETLEVVRS 347 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 + A F YS R GT + + +QV + V+ ER Sbjct: 348 LPLTYAHVFPYSARPGTVAAELPDQVGKAVRQER 381 >gi|212703826|ref|ZP_03311954.1| hypothetical protein DESPIG_01874 [Desulfovibrio piger ATCC 29098] gi|212672794|gb|EEB33277.1| hypothetical protein DESPIG_01874 [Desulfovibrio piger ATCC 29098] Length = 416 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 110/389 (28%), Positives = 181/389 (46%), Gaps = 32/389 (8%) Query: 56 VNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114 V M A L+ +NTC E A E + S L + L + + L+ VAGC+ G Sbjct: 17 VEHMGRARLVFINTCGFIEPAVRESIRSILDAVERLGRCKRRP----LLAVAGCMVGRYG 72 Query: 115 -EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173 +++ P V++ + P ++ R + RL Y Sbjct: 73 VKDLAADLPEVDLWLPTGELENWPVMV-------REALGLPAAPAAPGRLLSTGPSY--- 122 Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233 A+L + EGC C FC +P RG S + + +EAR L+ GV E+ L+ Q++ Sbjct: 123 ----AWLKVGEGCRHKCAFCTIPSIRGPLRSVPAADLREEARGLLAGGVRELVLVAQDLT 178 Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LMPYLH 292 +W G D + + LL L + L LR +P ++ +++ + L+PY Sbjct: 179 SW-GSDFDTPQ-SLPHLLDELLPLDRLTWLRLLYLYPSGVTPEMLRYMREAGPQLLPYFD 236 Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 +P+Q +L M R A + R+++DR+R P+ A+ + FIVG+PGET++ F+ Sbjct: 237 IPLQHAHPEVLTRMGRPF-ANDPRRVVDRVREALPEAALRTTFIVGYPGETEEHFQTLCR 295 Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDAC 409 V++ + F Y GTP + M +QV V+ ER L+ +Q ++ EQQ+ Sbjct: 296 FVEETRFRHLGVFAYQAEEGTPAAAMPDQVPMEVREERRATLMEIQAEISEQQLQ---ES 352 Query: 410 VGQIIEVLIE-KHGKEKGKLVGRSPWLQS 437 VGQ + VL++ H + G VGR W Q+ Sbjct: 353 VGQTMPVLVDAPHDEWPGLHVGRV-WFQA 380 >gi|15644913|ref|NP_207083.1| hypothetical protein HP0285 [Helicobacter pylori 26695] gi|2501536|sp|P56130|Y285_HELPY RecName: Full=Putative methylthiotransferase HP_0285 gi|2313381|gb|AAD07353.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 418 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 109/395 (27%), Positives = 187/395 (47%), Gaps = 45/395 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEE----QEADIIIINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L D V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARL---------DKEVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258 S +++++ L GV E+ L G NV ++ RG + + L+ LS+I Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++ Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDREL 271 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++ I S + AI +DFIVG PGE+ F ++ + F YS R TP S M Sbjct: 272 LETIAS--KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329 Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406 + V +RL ++ K R+ Q+ N Sbjct: 330 TDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLN 364 >gi|210635803|ref|ZP_03298621.1| hypothetical protein COLSTE_02560 [Collinsella stercoris DSM 13279] gi|210158308|gb|EEA89279.1| hypothetical protein COLSTE_02560 [Collinsella stercoris DSM 13279] Length = 238 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 116/208 (55%), Gaps = 1/208 (0%) Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 + +Q+GC+ C++C+V RG E S + V+D+ R+ G+ E+ L G N+ A+ G Sbjct: 30 IKVQDGCNNRCSYCIVWKARGPERSVPVEAVLDQVREAERAGIPEVVLTGVNLGAYDGVD 89 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH-GDLDVLMPYLHLPVQSG 298 +LL + + ++R ++ P D+ + LI A + P+LHLP+QSG Sbjct: 90 ARDAHVEIDELLNIILRETDIPQVRLSSLEPMDVDERLIDAMVAGGPRVAPFLHLPLQSG 149 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 L+ MNR +TA +Y + IR+ P +IS D I GFPGETDD+F ++ L +++G Sbjct: 150 CSATLERMNRPYTAEQYEATVAMIRAKLPAASISCDIIAGFPGETDDEFAQSLALCERVG 209 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENV 386 +++ F+YS R GTP + +QV V Sbjct: 210 FSRMHVFRYSARPGTPAAEAADQVPPEV 237 >gi|326429727|gb|EGD75297.1| cdk5 regulatory subunit associated protein 1 [Salpingoeca sp. ATCC 50818] Length = 530 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 97/352 (27%), Positives = 164/352 (46%), Gaps = 47/352 (13%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 +++++GC N D M + + GYE V ADL +LN+C ++ + + Sbjct: 56 YIRTWGCSHNTSDGEYMAGVLSAAGYEIVKDKMTADLWILNSCTVKTPSEDTF------- 108 Query: 88 RNLKNSRIKEGGDL--LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 N+ I+EG L +V+AGCVAQA+ + + +VG R+ E++E Sbjct: 109 ----NNAIREGQKLGKKLVLAGCVAQAQPRGKMTQG---LSIVGIHQIDRVLEVVEETLQ 161 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYN------RKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 G+ V + S GG R+ + + I GC CT+C + R Sbjct: 162 GRTV--------RLLSKKSSGAGGAPLAMPKIRRNELIEIIPINTGCLNQCTYCKTKHAR 213 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI-- 257 G S ++V R+++ GV EI L ++ + G+ D T +LL+ + E+ Sbjct: 214 GQLNSYPADEIVARVRQVVAEGVVEIWLTSEDTGTY-GRDRDD---TIVNLLWKIIEVLP 269 Query: 258 ------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 G+ Y H +M+ L + +LH+P+Q+ SD +L +M R + Sbjct: 270 DGVMLRVGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPIQAASDAVLTTMKREYN 324 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 E+ I+D +R P++ I++D I GFPGET++DF+ TMDL +K + F Sbjct: 325 CEEFCHIVDFLRERVPNVTIATDIICGFPGETEEDFQETMDLCEKYKFPSLF 376 >gi|146277094|ref|YP_001167253.1| ribosomal protein S12 methylthiotransferase [Rhodobacter sphaeroides ATCC 17025] gi|145555335|gb|ABP69948.1| MiaB-like tRNA modifying enzyme YliG [Rhodobacter sphaeroides ATCC 17025] Length = 463 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 111/398 (27%), Positives = 179/398 (44%), Gaps = 39/398 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 42 SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 98 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ AE + I P V V GP Y ++V+ Sbjct: 99 ----LRENGR--VIVTGCLG-AEPDYITGAHPKVLAVTGPHQY-------------EQVL 138 Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D + D F L G R + +L I EGC+ C FC++P RG +SR Sbjct: 139 DAVHGAVPPAPDPFVDLLPATGVRLTPRHFS-YLKISEGCNHSCRFCIIPDMRGRLVSRP 197 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 V+ EA KL++ GV E+ ++ Q+ +A W+G + L L ++ VR Sbjct: 198 ERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGP----VRFPILPLARELGQLGAWVR 253 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G +++PYL +P Q +LK M R A I Sbjct: 254 LHYVYPYPHVRELIPLMAEG---LILPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAW 310 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PDI + S FIVG+PGET+++F+ +D +D+ + F+Y G + + + V Sbjct: 311 RRDCPDITLRSTFIVGYPGETEEEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHV 370 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 +K ER +K + + A +GQ +EV++++ Sbjct: 371 APELKQERWERFMQKAQAISEAKLAARIGQRLEVIVDE 408 >gi|297559628|ref|YP_003678602.1| RNA modification enzyme, MiaB family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844076|gb|ADH66096.1| RNA modification enzyme, MiaB family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 480 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 122/472 (25%), Positives = 207/472 (43%), Gaps = 49/472 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAE-KVYSFLGRIRN 89 + GC N DS + + G++ V +AD+ ++NTC + A + + + L N Sbjct: 11 TLGCARNEVDSEELAGRLSAGGWDLVEGDTEADVTIVNTCGFIDAAKQDSIETLLEAAEN 70 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 GG VV AGC+A+ G E+ + P V+ G Y + + L+ G+ + Sbjct: 71 --------GG--RVVAAGCMAERYGSELAQALPEAQVI-GFDDYAAITDRLDDVVAGRTL 119 Query: 150 VDTD---------YSVEDKFERLSIVDGGYN-------------------RKR---GVTA 178 V D S ++ + V G + R+R G A Sbjct: 120 VPHDPRDRRTLLPISPAERDASQAHVPGHASFAESAGAEGTELPYRASVPRRRLVGGPVA 179 Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238 L I GCD+ CTFC +P RG +SR +V EA L GV E+ L+ +N ++ GK Sbjct: 180 NLKIASGCDRRCTFCAIPTFRGAYLSRRPDDIVREAEWLASEGVREVFLVSENSTSY-GK 238 Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 L G+ LL L+ ++GL R+R + P ++ L+ ++PY L Q Sbjct: 239 DL-GDVRALEKLLPRLAAVEGLERVRVSYLQPAEVRPGLVDVLTGTPGVVPYFDLSFQHA 297 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 S +L+ M R + +++D +R P+ S+FIVGFPGET+ +F + + + Sbjct: 298 SGTLLRRMRRFGDRERFLELLDTVRKRAPEAGSRSNFIVGFPGETEAEFEDLVSFLSEAR 357 Query: 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 F YS GT ++ + V AER+ L + E + +G + VL+ Sbjct: 358 LDAIGVFGYSDEEGTEAFGHEGKLPDEVVAERVDRLNRLSEELMTQRAEERIGSEVTVLV 417 Query: 419 E---KHGKEKGKLVGRSPWLQ-SVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 E + G +G+ ++P + S +L + +GD+++ + + L E Sbjct: 418 ETVLEDGAYEGRAEHQAPEVDGSTILYGEGLAVGDLVRATVIQSAGADLIAE 469 >gi|114766732|ref|ZP_01445670.1| MiaB-like Radical SAM protein [Pelagibaca bermudensis HTCC2601] gi|114541051|gb|EAU44107.1| MiaB-like Radical SAM protein [Roseovarius sp. HTCC2601] Length = 454 Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 119/444 (26%), Positives = 193/444 (43%), Gaps = 29/444 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G N Sbjct: 34 SLGCPKALVDSERILTRLRAEGYGISPDYAGADAVIVNTCGFLDSAKAESLEAIGEALN- 92 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N + V+V GC+ AE + I P V V GP Y ++ + + A Sbjct: 93 ENGK--------VIVTGCLG-AEPDYITGAHPKVLAVTGPHQYEQVLDAVHGAV------ 137 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L G R + +L I EGC+ C FC++P RG SR V Sbjct: 138 ---PPAPDPFVDLLPSSGVKLTPRHYS-YLKISEGCNHACKFCIIPDMRGKLASRPHRAV 193 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 + EA KL++ GV E+ ++ Q+ +A+ D EK L L + VR+ Y + Sbjct: 194 MREAEKLVEAGVRELLVISQDTSAYGTDWKDRPEKAPIQSLARDLGSLGAWVRMHYVYPY 253 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P + A G + +PYL +P Q L+ M R A I R+V P+I Sbjct: 254 PHVREMIPLMAEGGI---LPYLDIPFQHAHPDTLRRMARPAAAARTLDEIAAWRAVCPEI 310 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 + S FIVG+PGET+ +F+ +D +D+ + F+Y G + + + V VK E Sbjct: 311 VLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGCFQYENVAGARSNALPDHVPAEVKQE 370 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIE--KHGKEKGKLVGRSPWLQSVVLNSKNH-- 445 R +K + + A VG +EV+++ + + +P + + + H Sbjct: 371 RWDRFMEKAQAISEAKLAAKVGTRVEVIVDLVEDDAATCRTEADAPEIDGNLFIDEGHEA 430 Query: 446 -NIGDIIKVRITDVKISTLYGELV 468 + GDI+ V + + L+G L Sbjct: 431 LSPGDIVTVEVDEAGEYDLWGRLA 454 >gi|317179320|dbj|BAJ57108.1| hypothetical protein HPF30_1011 [Helicobacter pylori F30] Length = 418 Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 108/395 (27%), Positives = 188/395 (47%), Gaps = 45/395 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + ++ V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-LLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258 S +++++ L GV E+ L G NV ++ RG + + L+ LS+I Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++ Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLEKMNRRNRTKSDREL 271 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++ I S + AI +DFIVG PGE++ F ++ + F YS R TP S M Sbjct: 272 LEVIAS--KNFAIGTDFIVGHPGESESVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329 Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406 + V +RL ++ K R+ Q+ N Sbjct: 330 TDSVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364 >gi|152993771|ref|YP_001359492.1| tRNA modifying enzyme [Sulfurovum sp. NBC37-1] gi|238066610|sp|A6QCC6|RIMO_SULNB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|151425632|dbj|BAF73135.1| tRNA modifying enzyme [Sulfurovum sp. NBC37-1] Length = 439 Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 106/416 (25%), Positives = 203/416 (48%), Gaps = 25/416 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + S GC N+ DS M + YE + +AD+I++NTC + A E+ + Sbjct: 5 KKLHLISLGCTKNLVDSEVMLGRL--KEYEITDDNTEADVIIVNTCGFIDAAKEES---I 59 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL--ER 142 + NL + R KE D ++V++GC+++ EE+ + P +++ G Y ++ EL+ ++ Sbjct: 60 NTVLNLHDER-KE--DSILVMSGCLSERYKEELQQDMPEIDIFTGVGDYEKIDELIASKQ 116 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + F V Y + R+ I Y+ A++ I EGC++ C+FC +P +G Sbjct: 117 STFSPEV----YLATETSGRV-ITGSNYH------AYIKIAEGCNQACSFCAIPSFKGKL 165 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SRSLS + E R L + G + + + Q+ +++ G+ +D K DL+ + I+G+ Sbjct: 166 HSRSLSSIEKEVRMLAEQGYYDFSFISQDSSSY-GRDMDL-KDGLIDLIKVVEAIEGVRS 223 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 R +P + LI D + Y +P+Q D +LK+M R + ++++ + Sbjct: 224 ARILYLYPSTTTFELIDTIADSKIFQTYYDMPIQHIDDAVLKTMKRGFGEQKTIELLEHM 283 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 +S +P+ + + I G PGE+ F +++ G+ + +F YS T M EQ+ Sbjct: 284 KS-KPNAFLRTSVIAGHPGESQRSFEKLCSFMEEFGFDRFNTFHYSNEETTTAYQM-EQI 341 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 +++ ER L + + + VG+ +E++I+ E L+ P +V Sbjct: 342 PQDIINERAEILGEIAERSTLRSLEKMVGKTVELVIDGESDEHEYLLSARPLQWAV 397 >gi|298736768|ref|YP_003729298.1| hypothetical protein HPB8_1277 [Helicobacter pylori B8] gi|298355962|emb|CBI66834.1| conserved hypothetical protein [Helicobacter pylori B8] Length = 418 Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 106/387 (27%), Positives = 186/387 (48%), Gaps = 38/387 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+IV+N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIVINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMVRLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258 S +++++ L GV E+ L G NV ++ RG + + L+ LS+I Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++ Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +++I S + AI +DFIVG PGE++ F ++ + F YS R TP S M Sbjct: 272 LEKIAS--KNFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSF 405 + V +RL ++ + + +F Sbjct: 330 RDSVSLEDSKKRLNAIKDLILHKNKAF 356 >gi|254167353|ref|ZP_04874205.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum boonei T469] gi|197623616|gb|EDY36179.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum boonei T469] Length = 386 Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 120/420 (28%), Positives = 201/420 (47%), Gaps = 50/420 (11%) Query: 54 ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113 E V+ ++AD+I++ TC + E ++ L RI+ LK K +VV GC+ A Sbjct: 8 EIVSRPEEADVILIGTCVVIEHTENRM---LRRIKELKQYGKK------IVVYGCLPSA- 57 Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173 R ++++ V P + +++ D S D+ + I D Sbjct: 58 ------RKELLDMDVVPIATWEF-------EMAGEILNLDRSPMDE---VFIWDA----- 96 Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233 A + I GC CT+C+ RG SRS ++ +K ++ G EI + Q+ Sbjct: 97 ---VATIPIANGCLGQCTYCITRLARGRVKSRSKDWILRLVKKALEQGAVEIRISAQDTA 153 Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCLIKAHGDLDVLMPY 290 A+ G+ + E ++L+ S++ I G LR PR+ + LI A+ + V + Sbjct: 154 AY-GRDIGTE---LAELINSITAIPGKFYLRVGMMEPRETLRILPELIDAYSNPKVYK-F 208 Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350 LHLPVQSG D IL MNR + ++ +I+ R P++ +S+D IVGFPGE D+ F T Sbjct: 209 LHLPVQSGDDEILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGENDESFENT 268 Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK--AERLLCLQKKLREQQVSFNDA 408 M L+ +I ++SPR TP VK +++L L + ++ ++ Sbjct: 269 MKLIKEIKPEILNITRFSPRPKTPAYKWKRPSTNKVKGWSQKLTALHMENMHKRF---ES 325 Query: 409 CVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +G+ +V++ GK +GK + RS + VVL+ N IG +RIT + S L G+++ Sbjct: 326 MLGKEFKVIVPSRGK-RGKYLARSQNYEPVVLD--NAVIGREYIIRITHYEKSHLVGKIL 382 >gi|238066634|sp|A4WRD4|RIMO_RHOS5 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO Length = 457 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 111/398 (27%), Positives = 179/398 (44%), Gaps = 39/398 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 36 SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 92 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ AE + I P V V GP Y ++V+ Sbjct: 93 ----LRENGR--VIVTGCLG-AEPDYITGAHPKVLAVTGPHQY-------------EQVL 132 Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D + D F L G R + +L I EGC+ C FC++P RG +SR Sbjct: 133 DAVHGAVPPAPDPFVDLLPATGVRLTPRHFS-YLKISEGCNHSCRFCIIPDMRGRLVSRP 191 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 V+ EA KL++ GV E+ ++ Q+ +A W+G + L L ++ VR Sbjct: 192 ERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGP----VRFPILPLARELGQLGAWVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G +++PYL +P Q +LK M R A I Sbjct: 248 LHYVYPYPHVRELIPLMAEG---LILPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAW 304 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R PDI + S FIVG+PGET+++F+ +D +D+ + F+Y G + + + V Sbjct: 305 RRDCPDITLRSTFIVGYPGETEEEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHV 364 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 +K ER +K + + A +GQ +EV++++ Sbjct: 365 APELKQERWERFMQKAQAISEAKLAARIGQRLEVIVDE 402 >gi|86150946|ref|ZP_01069162.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni 260.94] gi|315124495|ref|YP_004066499.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85842116|gb|EAQ59362.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni 260.94] gi|315018217|gb|ADT66310.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 416 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 104/410 (25%), Positives = 194/410 (47%), Gaps = 55/410 (13%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ F K++GC+ N+YD+ ++ + + YE +N + A +IV+N+C + A + S Sbjct: 1 MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQ 131 ++ N+ K+G + V++ GC A ++G+E+L + + +N +G + Sbjct: 59 YV-------NTMQKKG--IKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAK 109 Query: 132 T-YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 T +Y L L +D D E + AF+ IQEGCD C Sbjct: 110 TSFYELGNL--------NFIDKDIVCE--------------YENHTKAFVKIQEGCDFAC 147 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 ++C++P RG S ++ + L NG EI L G N+ ++ GL T L Sbjct: 148 SYCIIPSVRGKSRSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTTLGKL 203 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L + +I G+ R+R + P + + ++ D L +LH+ +Q S+++L+ M RR Sbjct: 204 LQKMGQISGIKRIRLGSLEPAQIDESFLEIL-DETWLERHLHIALQHTSEKMLRIMRRRS 262 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 ++ + I S A+ +DFIV PGE+++ ++ + + +F +SPR Sbjct: 263 HTDNDLKLFNTIAS--KGYALGTDFIVAHPGESEEMWQEALRNFKEFPLTHIHAFIFSPR 320 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIE 419 T + M + ++ + ERL L+ + + F Q+ +EVL+E Sbjct: 321 NNTHSATMKDVINGTLAKERLNTLKSIVEKNNYEFRKK--NQVPLEVLVE 368 >gi|294678658|ref|YP_003579273.1| MiaB family RNA modification enzyme [Rhodobacter capsulatus SB 1003] gi|294477478|gb|ADE86866.1| RNA modification enzyme, MiaB family [Rhodobacter capsulatus SB 1003] Length = 464 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 119/452 (26%), Positives = 198/452 (43%), Gaps = 40/452 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY S AD +++NTC + A + +G Sbjct: 33 SLGCPKALVDSERILTRLRAEGYAISPSYQGADAVIVNTCGFLDSAKAESLEAIGEA--- 89 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + E G V+V GC+ AE E I P V V GP+ Y ++ + + A K Sbjct: 90 ----LSENGK--VIVTGCLG-AEPEFITGVHPKVLAVTGPEQYEQVLDAVHGAVPPK--- 139 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L G R + +L I EGC+ C FC++P RG +SR V Sbjct: 140 ------PDPFVDLLPATGIKLTPRHFS-YLKISEGCNHACKFCIIPDMRGKLVSRPAHAV 192 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 + EA KL++ GV E+ ++ Q+ +A W+G + + L L++ G Sbjct: 193 LREAEKLLEAGVRELLVISQDTSAYGLDRRHEATAWKGAEVRAHITDLTRELGKLAQPSG 252 Query: 260 -LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 VRL Y +P + A G +++PYL +P Q LK M R + + Sbjct: 253 AWVRLHYVYPYPHVRELIPLMADG---LVLPYLDIPFQHAHPETLKRMARPAASAKTLDE 309 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I R+ P+I + S FIVG+PGET+ +F+ +D + + + F+Y G +++ Sbjct: 310 IAAWRADCPEIVLRSTFIVGYPGETEAEFQYLLDWMAEAQLDRVGCFQYENVKGARSNDL 369 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR--SPWLQ 436 + V VK ER + + + A VG + +VL++ E R +P + Sbjct: 370 PDHVPAEVKQERWERFMEAAQAISEAKLAAKVGTVQQVLVDAVDDEGATCRTRADAPEID 429 Query: 437 SVVL---NSKNHNIGDIIKVRITDVKISTLYG 465 + ++ + GD++ V + + L+G Sbjct: 430 GNLFIDEGFEDLSPGDMVTVEVEEASDYDLWG 461 >gi|283956404|ref|ZP_06373884.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni 1336] gi|283792124|gb|EFC30913.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni 1336] Length = 416 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 104/410 (25%), Positives = 194/410 (47%), Gaps = 55/410 (13%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ F K++GC+ N+YD+ ++ + + YE +N + A +IV+N+C + A + S Sbjct: 1 MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQ 131 ++ N+ K+G + V++ GC A ++G+E+L + + +N +G + Sbjct: 59 YV-------NTMQKKG--IKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAK 109 Query: 132 T-YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 T +Y L L +D D E + AF+ IQEGCD C Sbjct: 110 TSFYELGNL--------NFIDKDIVCE--------------YENHTKAFVKIQEGCDFAC 147 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 ++C++P RG S ++ + L NG EI L G N+ ++ GL + L Sbjct: 148 SYCIIPSVRGKSRSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTSLGKL 203 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L + +I G+ R+R + P + + ++ D L +LH+ +Q S+++L+ M RR Sbjct: 204 LRKMGQISGIKRIRLGSLEPAQIDESFLEIL-DETWLERHLHIALQHTSEKMLRIMRRRS 262 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 ++ + I S A+ +DFIV PGE+++ ++ + + +F +SPR Sbjct: 263 HTDNDLKLFNTIAS--KGYALGTDFIVAHPGESEELWQEALKKFKEFPLTHIHAFIFSPR 320 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIE 419 T + M + ++ + ERL L+ + + F Q+ +EVLIE Sbjct: 321 NNTHSATMKDVINGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVLIE 368 >gi|91788563|ref|YP_549515.1| ribosomal protein S12 methylthiotransferase [Polaromonas sp. JS666] gi|123355625|sp|Q12A25|RIMO_POLSJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|91697788|gb|ABE44617.1| SSU ribosomal protein S12P methylthiotransferase [Polaromonas sp. JS666] Length = 469 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 127/473 (26%), Positives = 204/473 (43%), Gaps = 64/473 (13%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS + ++GY+ + + ADL+++NTC + A ++ Sbjct: 16 APRVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFIDDAVKESLD 74 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGE---EILRR-SPIVNVVVGPQTYYRLPE 138 +G +N R V+V GC+ GE ++R+ P V V GP Sbjct: 75 TIGEALA-ENGR--------VIVTGCLGAKGGEGAGNLVRQMHPSVLAVTGPHAT----- 120 Query: 139 LLERARFGKRVVDTDY----SVEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 + V+D + D F L + G A+L I EGC+ CT Sbjct: 121 --------QEVMDAVHLNLPKPHDPFVDLVPNAFGIAGIKLTPKHYAYLKISEGCNHRCT 172 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGL 240 FC++P RG +SR + V++EAR L + GV E+ ++ Q+ +A W GK + Sbjct: 173 FCIIPSMRGDLVSRPIGDVLNEARALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPV 232 Query: 241 DGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L ++E G VRL Y +P + A G ++PYL +P+Q Sbjct: 233 KTRMLELVQALGDIAEPYGAWVRLHYVYPYPSVDEVLPLMATGK---VLPYLDVPLQHSH 289 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +LK M R + + + I R R + P+I I S FI GFPGET+ +F ++ + + Sbjct: 290 PDVLKRMKRPASGEKNLERIARWREICPEIVIRSTFIAGFPGETEAEFAHLLEFMREARI 349 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 +A F YS G +++ + V+ ER E VG ++VL++ Sbjct: 350 DRAGCFAYSAVEGATANDIPGMLPLEVREERRARFMAVAEEVSSLKLQQRVGATMQVLVD 409 Query: 420 KH---GKEKGKLVGRS----PWLQSVV------LNSKNHNIGDIIKVRITDVK 459 G++ G GRS P + VV SK +G+ + RI + Sbjct: 410 SAPALGRKGG--TGRSYADAPEIDGVVKLLPPEKISKTLKVGEFTRARIVGTQ 460 >gi|307110241|gb|EFN58477.1| hypothetical protein CHLNCDRAFT_19538 [Chlorella variabilis] Length = 499 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 110/369 (29%), Positives = 177/369 (47%), Gaps = 36/369 (9%) Query: 22 IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA--DLIVLNTCHIREKAA 77 +VP QR +VK++GC N DS M G++ V+ D A DL +LNTC ++ + Sbjct: 62 VVPGTQRIWVKTFGCSHNSSDSEYMMGQLQEYGFKLVDEADSAAADLWLLNTCTVKSPSQ 121 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTYYR 135 + + L R R L + ++VAGCV Q + RR+ + ++G R Sbjct: 122 SAMDTLLRRGRRLGKA---------LLVAGCVPQGD-----RRTAELRGLSLLGVTQIDR 167 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 + E +E G V + RL + NR L + GC CT+C Sbjct: 168 VVEAVEETLKGHTV---QLLAKKALPRLDLPKVRRNRH---IEILPLSTGCLGACTYCKT 221 Query: 196 PYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 + RG S +++V A D V EI L ++ A+ G+ + + LL L Sbjct: 222 KHARGQLGSYDPAELVRRAAAAAADPQVREIWLSSEDTGAY-GRDIG---TSLPALLREL 277 Query: 255 SEI---KGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRR 309 E+ G LR ++P + + L + L D + YLH+PVQSGSD +L +M R Sbjct: 278 VEVLPPDGRCMLRVGMTNPPFILEHLAEVGAILRDDRVFSYLHVPVQSGSDAVLTAMRRE 337 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 ++A ++R++ D + + P + +++D I GFPGET++D AT+ L+DK + ++ P Sbjct: 338 YSAAQFRRVCDTLLAAVPGLELATDIICGFPGETEEDHGATLALLDKYRFPHCHISQFYP 397 Query: 370 RLGTPGSNM 378 R GTP + M Sbjct: 398 RPGTPAARM 406 >gi|221638765|ref|YP_002525027.1| ribosomal protein S12 methylthiotransferase [Rhodobacter sphaeroides KD131] gi|221159546|gb|ACM00526.1| MiaB-like tRNA modifying enzyme YliG [Rhodobacter sphaeroides KD131] Length = 455 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 123/451 (27%), Positives = 197/451 (43%), Gaps = 44/451 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 36 SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 92 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ AE + I P V V GP Y ++V+ Sbjct: 93 ----LRENGR--VIVTGCLG-AEPDYITGAHPKVLAVTGPHQY-------------EQVL 132 Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D + D F L G R + +L I EGC+ C FC++P RG SR Sbjct: 133 DAVHGAVPPAPDPFVDLLPATGVRLTPRHFS-YLKISEGCNHTCRFCIIPDMRGRLASRP 191 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 V+ EA KL++ GV E+ ++ Q+ +A W+G EK L L + VR Sbjct: 192 ERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGP----EKFPILPLARELGRLGAWVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G +++PYL +P Q +LK M R A I Sbjct: 248 LHYVYPYPHVRELIPLMAEG---LVLPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAW 304 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P+IA+ S FIVG+PGET+ +F+ +D +D+ + F+Y G + + + V Sbjct: 305 RRDCPEIALRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHV 364 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL 440 VK ER +K + + A VG+ +EV++++ ++ + +P + + Sbjct: 365 APEVKQERWDRFMEKAQAISEAKLAAKVGRRMEVIVDEVDEDGATCRTKADAPEIDGNLF 424 Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELV 468 K GDI+ V + + L+G V Sbjct: 425 IDEGFKGLAPGDILTVEVEEAGEYDLWGRPV 455 >gi|326443822|ref|ZP_08218556.1| hypothetical protein SclaA2_22283 [Streptomyces clavuligerus ATCC 27064] Length = 472 Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 122/426 (28%), Positives = 186/426 (43%), Gaps = 57/426 (13%) Query: 50 SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109 + G++ V DAD+ V+NTC E A + L +LK+ G VV GC+ Sbjct: 3 ADGWQLVEDAADADVAVVNTCGFVEAAKKDSVDALLEANDLKD----HGRTQAVVAVGCM 58 Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169 A+ G+E+ P + V+G Y + + L+ G + ++ D+ + L + Sbjct: 59 AERYGKELAEALPEADGVLGFDDYADISDRLQTILSGG--IHASHTPRDRRKLLPLSPAE 116 Query: 170 YNRKRGVT--------------------------------------AFLTIQEGCDKFCT 191 GV A + + GCD+ C+ Sbjct: 117 RQSATGVALPGHGDAAPAPIVDLPEGVAPESGPRAPLRRRLGSSPVASVKLASGCDRRCS 176 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 FC +P RG ISR S V+ E R L + GV E+ L+ +N N GK L G+ LL Sbjct: 177 FCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEVMLVSEN-NTSYGKDL-GDIRLLETLL 234 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L+ + G+ R+R + P +M LI + PY L Q + +L+SM R Sbjct: 235 PELAAVDGIERVRVSYLQPAEMRPGLIDVLTSTPKIAPYFDLSFQHSAPDVLRSMRRFGD 294 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-----TMDLVDKIGYAQAFSFK 366 + ++++ IRS P + S+FIVGFPGE++ DF T +D IG F Sbjct: 295 TERFLELLETIRSKAPQAGVRSNFIVGFPGESEADFAELERFLTHARLDAIGV-----FG 349 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 YS GT + ++DE+V AERL L + E + VG+ +EVL+E E G Sbjct: 350 YSDEDGTEAAGYGNKLDEDVVAERLAHLSRLAEELTAQRAEERVGETLEVLVESVDAEDG 409 Query: 427 KLVGRS 432 VGR+ Sbjct: 410 A-VGRA 414 >gi|40794666|gb|AAR90873.1| putative 2-methylthioadenine synthetase [Brachyspira pilosicoli] Length = 359 Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 102/315 (32%), Positives = 153/315 (48%), Gaps = 28/315 (8%) Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 N +A++ I +GC C+FC +P RG SR + +V EAR+ NG EI L+ Sbjct: 54 NTSTNYSAYIRISDGCHANCSFCAIPSIRGKHRSRKIEDIVKEAREYAKNGAKEINLIAH 113 Query: 231 NVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289 + G D +K DLL LS I G+ +R +P ++ +I A + ++P Sbjct: 114 ETTYY---GYDIYKKLALPDLLKELSVIDGIEWIRVLYQNPVVLNKSIIDAMFKTEKVVP 170 Query: 290 YLHLPVQSGSDRILKSMNRRHTAYE-YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348 Y +P+Q ILK MNR + Y Y+ +I+ IRS + I + IVGFPGET + F+ Sbjct: 171 YFDIPLQHIDKDILKDMNRGNRGYSFYKDMINYIRSYDENAVIRTSLIVGFPGETVESFK 230 Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR------EQQ 402 + V K+ + F YS T +L + K ++L+ K +R E++ Sbjct: 231 KLVSFVKKMKLDRVGVFTYSEEENTDA--LLINKKKISKNKKLMLRDKLMRIALEVSEER 288 Query: 403 VSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV----------LNSKNHNIGDIIK 452 +S +G+ I+VLIEK KE+ K +GRS + V N N NIGDI+K Sbjct: 289 LS---RFIGKSIDVLIEK--KEEDKFIGRSKYDAPEVDGFVEVYFDKKNVDNINIGDIVK 343 Query: 453 VRITDVKISTLYGEL 467 V+I L G L Sbjct: 344 VKIVHNTEYDLVGNL 358 >gi|330466391|ref|YP_004404134.1| MiaB-like tRNA modifying protein ylig [Verrucosispora maris AB-18-032] gi|328809362|gb|AEB43534.1| miab-like tRNA modifying enzyme ylig [Verrucosispora maris AB-18-032] Length = 492 Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 125/486 (25%), Positives = 207/486 (42%), Gaps = 70/486 (14%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + + GC N DS + + G++ + AD++V+NTC EKA + L Sbjct: 10 RRVALLTLGCARNEVDSEELAARLHADGWQVTTDGEGADVVVVNTCGFVEKAKQDSIQTL 69 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----PQTYYRLPELL 140 + VV AGC+A+ G E+ P V+ PQ RL ++ Sbjct: 70 LAAADTGAK---------VVAAGCMAERYGRELADSLPEAQAVLSFDDYPQIAARLDAVV 120 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVD----------GGYNR------------------ 172 E F T ++ D+ E L + G+ R Sbjct: 121 EGREF------TAHTPRDRRELLPLTPVARRDSAVSLPGHGRGADVDEHTPAHLRPVLRR 174 Query: 173 --KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 G A L + GCD+ C FC +P RG +SR+ +++ EA L +GV E+ L+ + Sbjct: 175 RLDSGPVASLKLASGCDRRCAFCAIPAFRGAFVSRTPDELLAEAEWLAKSGVRELVLVSE 234 Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290 N ++ GK L G+ LL L+ I G+VR+R + P + LI+A + PY Sbjct: 235 NSTSY-GKDL-GDPRALEKLLPQLAAIDGIVRVRASYLQPAETRPGLIEAIATTPGVAPY 292 Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA- 349 L Q S+ +L+ M R + + +++ R + P S+FIVGFPGET D Sbjct: 293 FDLSFQHSSEPVLRRMRRFGSTDRFLELLASARELDPQAGARSNFIVGFPGETRADVDEL 352 Query: 350 ----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQ 402 T +D IG F YS GT + + +V + ++L L +L Q+ Sbjct: 353 VRFLTEARLDAIGM-----FDYSDEDGTEAAGLPGKVSAATIKRRYDKLSALADELCSQR 407 Query: 403 VSFNDACVGQIIEVLIEKHGKE--KGKLVGRSPWLQ-SVVLNSKNHNIGDIIKVRITDVK 459 +G +EVL++ + +G+ ++P + S L + + D+ +R D+ Sbjct: 408 AEDR---LGTTVEVLVDSIEGDVVEGRAAHQAPEVDGSTTLVAPDDGGVDLAALRPGDLV 464 Query: 460 ISTLYG 465 +T+ G Sbjct: 465 RATVTG 470 >gi|261839141|gb|ACX98906.1| hypothetical protein HPKB_0296 [Helicobacter pylori 52] Length = 418 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 109/393 (27%), Positives = 187/393 (47%), Gaps = 41/393 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINVLLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260 S +++++ L GV E+ L G NV ++ + KG + L+ LS+I GL Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQIAGL 214 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + + + D L +LH+ +Q D +L+ MNRR+ A R++++ Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRAKSDRELLE 273 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 I S + AI +DFIVG PGE+ F ++ + F YS R TP S M + Sbjct: 274 VIAS--KNFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331 Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406 V +RL ++ K R+ Q+ N Sbjct: 332 SVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLN 364 >gi|254441053|ref|ZP_05054546.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Octadecabacter antarcticus 307] gi|198251131|gb|EDY75446.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Octadecabacter antarcticus 307] Length = 459 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 124/456 (27%), Positives = 203/456 (44%), Gaps = 43/456 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +V+NTC + A + +G Sbjct: 30 SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVVVNTCGFLDSAKAESLDAIGEA--- 86 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + E G V+V GC+ AE + I P + V GP Y ++ + + A Sbjct: 87 ----LTENGK--VIVTGCLG-AEPDYIREHHPRILAVTGPHQYEQVLDAVHAA------- 132 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 S + + L + ++L I EGC+ C FC++P RG SR V Sbjct: 133 -VPPSPDPFIDLLPATQVSLTPRH--YSYLKISEGCNHKCKFCIIPDMRGRLQSRPAHAV 189 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLD-------GEKCTFSDLLYSLSEIKG---- 259 + EA KLIDNGV E+ ++ Q+ +A+ G+D G + +DL L + G Sbjct: 190 MREAEKLIDNGVKELLVISQDTSAY---GVDTKHARDRGHRAHITDLARDLGSLGGENKP 246 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 VRL Y +P + A G +++PYL +P Q S +L+ M R A + I Sbjct: 247 WVRLHYVYPYPHVRQLIPLMADG---LILPYLDIPFQHASTDVLRRMARPAAAAKTLDEI 303 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 R + PDI + S FIVG+PGET+ +F+ +D +D+ + FKY G + + Sbjct: 304 TAWREICPDITLRSTFIVGYPGETEAEFQVLLDWMDEAQLDRVGCFKYENVAGARSNALP 363 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQ---IIEVLIEKHGKEKGKLVGRSPWLQ 436 + V VK +R +K + + A VGQ +I I+ G + +P + Sbjct: 364 DHVAAEVKQDRWDRFMEKAQAISEAKLTAKVGQVIDVIIDDIDADGVATCRTKADAPEID 423 Query: 437 SVVL---NSKNHNIGDIIKVRITDVKISTLYGELVV 469 + ++ ++G+I+KV + + L+G +V Sbjct: 424 GNLFIDEGTEGLSVGEIVKVEVDEAGEYDLWGLIVT 459 >gi|224540006|ref|ZP_03680545.1| hypothetical protein BACCELL_04918 [Bacteroides cellulosilyticus DSM 14838] gi|224518373|gb|EEF87478.1| hypothetical protein BACCELL_04918 [Bacteroides cellulosilyticus DSM 14838] Length = 432 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 117/453 (25%), Positives = 212/453 (46%), Gaps = 45/453 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS + GY + + + ++ V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEHLMRQLEEAGYHVTHDTEKPEGEIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE GDL + V GC+++ +E+ P V+ G + L + L +A Sbjct: 66 -LEFAQAKEEGDLEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWVELLQDLGKA---- 120 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER Y A+L I EGCD+ C++C +P G +SR + Sbjct: 121 ------YHEELHIERTLTTPRHY-------AYLKISEGCDRKCSYCAIPIITGKHVSRPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE R L+ GV E ++ Q + + G+D +K +L+ +SE+ G+ +R Sbjct: 168 EEILDEVRYLVSKGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISEVPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + + Y+ + +Q S+ +L+ M R T E +I++ R Sbjct: 225 YAYPAHFPMDLFRVMRERPNVCRYMDIALQHISNPMLEKMRRHVTQEETYHLIEQFRKEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385 P I + + +VG PGET+ DF + + K + + +F YS GT + E ++ + Sbjct: 285 PGIHLRTTLMVGHPGETEADFEELKEFIRKARFDRMGAFTYSEEEGTYAAAHYEDEIPQE 344 Query: 386 VKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSV 438 VK R L+ +Q+ + +Q + A VGQ ++V+I++ E +GR SP + Sbjct: 345 VKQARLDELMSIQQGISAEQSA---AKVGQCLKVIIDR--LEGDYYIGRTEFDSPEVDPE 399 Query: 439 VLNSKNHN---IGDIIKVRITDVKISTLYGELV 468 VL + IG+ +V I + L+G ++ Sbjct: 400 VLIEQGKQKLLIGNFYQVEIINSDDFDLFGRVI 432 >gi|308182459|ref|YP_003926586.1| hypothetical protein HPPC_01445 [Helicobacter pylori PeCan4] gi|308064644|gb|ADO06536.1| hypothetical protein HPPC_01445 [Helicobacter pylori PeCan4] Length = 418 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 111/395 (28%), Positives = 188/395 (47%), Gaps = 45/395 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+IV+N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIVINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258 S +++++ L GV E+ L G NV ++ RG + + L+ LS+I Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------AQLIKKLSQIT 212 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++ Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++ I S + AI +DFIVG PGE++ F ++ + F YS R TP S M Sbjct: 272 LEVIAS--KNFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329 Query: 379 -----LEQVDENVKAERLLCLQKK--LREQQVSFN 406 LE + + A + L L K R+ Q+ N Sbjct: 330 TDSVILEDSKKRLNAIKDLILHKNRAFRQLQLKLN 364 >gi|298704898|emb|CBJ34118.1| conserved unknown protein [Ectocarpus siliculosus] Length = 193 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/199 (39%), Positives = 118/199 (59%), Gaps = 14/199 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 +++ GCQMNV DS RME G ++ +A + VLNTC IR+ A +KVYS++G Sbjct: 1 METMGCQMNVADSERMEGQMADLGIQKTEDKTEASVFVLNTCSIRDHAEQKVYSYVGPY- 59 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 R ++G ++ +VVAGCVAQ EGE++LRR P +++V+GPQ RL +LLE G + Sbjct: 60 ---AIRKQKGENIAIVVAGCVAQQEGEKLLRRVPEIDLVMGPQYANRLGDLLEDVMNGNQ 116 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +V TD S+ I++ +RG + A++ I GC++ CT+CVVP RG+E SR Sbjct: 117 IVATDPSL--------IMEDVSKPRRGSSTCAWVNIIYGCNEHCTYCVVPGVRGVEQSRP 168 Query: 207 LSQVVDEARKLIDNGVCEI 225 + E +L G E+ Sbjct: 169 KESIRQEMVELAAAGYREV 187 >gi|320161025|ref|YP_004174249.1| hypothetical protein ANT_16230 [Anaerolinea thermophila UNI-1] gi|319994878|dbj|BAJ63649.1| hypothetical protein ANT_16230 [Anaerolinea thermophila UNI-1] Length = 429 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 106/395 (26%), Positives = 191/395 (48%), Gaps = 25/395 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R F+ S GC++N + + F + G+ V S +ADL+V+NTC + +AA Sbjct: 2 RIFLDSVGCRLNQSEIEKFALEFRAAGHTIVASPSEADLVVVNTCAVTAEAASD-----S 56 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R + + +R G + V GC A + + + V + Q + +L Sbjct: 57 RQKIRQAARYTSGK---IAVTGCWATLDRVGAMSLPKVDRVFLNDQKDTLVSTVLG---I 110 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 V D + + + G + R R AF+ +Q+GCD CTFCV RG SR Sbjct: 111 PTEVFDIEPLAREP------LPGLHARTR---AFIKVQDGCDNHCTFCVTRLARGKGRSR 161 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 ++++V+ + R G E+ L G ++ +W G D K DL+ + + + RLR Sbjct: 162 NIAEVLSDIRIAQAGGAKEVVLTGVHLGSW---GQDFTPKMHLRDLIKVILQESDIPRLR 218 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++ P ++ + D L +LHLP+QSG L+ M R+ + ++ ++++ R Sbjct: 219 LSSLEPWNLDEGFFALWED-SRLCRHLHLPLQSGCATTLRRMARKTSPQQFETLVNQARR 277 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 D+AI++D IVGFPGET+++F ++ V+++ +A F YS R GT + + V Sbjct: 278 WISDVAITTDIIVGFPGETEEEFEESLRFVERMRFAGGHVFTYSDRPGTAATRLPNPVPP 337 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ++ R +++ ++E ++ +G+ + VL E Sbjct: 338 EIRKLRNARIREVVQESAQNYLKQFLGKEVLVLWE 372 >gi|293373984|ref|ZP_06620325.1| MiaB-like protein [Bacteroides ovatus SD CMC 3f] gi|292631060|gb|EFF49697.1| MiaB-like protein [Bacteroides ovatus SD CMC 3f] Length = 436 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 117/450 (26%), Positives = 212/450 (47%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ GY + ++ ++ V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ + KE GDL + V GC+++ +E+ P V+ G + ELL+ GK Sbjct: 66 -LEFAERKEEGDLKKLFVMGCLSERYLKELAVEIPQVDKFYGK---FNWKELLQD--LGK 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D Y ER Y A+L I EGCD+ C++C +P G IS+ + Sbjct: 120 VYHDELY-----IERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGHHISKPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE R L+ GV E ++ Q + + G+D +K +L+ +S+I G+ +R Sbjct: 168 EEILDEVRYLVSQGVKEFQVIAQELTYY---GIDRYKKQMLPELIERISDIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + D + Y+ + +Q SD +LK M R+ + + Q+I++ R Sbjct: 225 YAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYQLIEQFRREV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385 P I + + +VG PGET++DF + V K+ + + +F YS GT + E + + Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEDLKEFVRKVRFDRMGAFAYSEEEGTYAAETYEDSIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440 VK RL L + + +G+ ++V+I++ E +GR SP + VL Sbjct: 345 VKQARLDELMDIQQGISAELSAEKIGKQMKVIIDR--LEGDYYIGRTEFDSPEVDPEVLI 402 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG + +V + + LY +++ Sbjct: 403 DRSERELKIGQLYQVEVVNADDFDLYAKII 432 >gi|71029160|ref|XP_764223.1| hypothetical protein [Theileria parva strain Muguga] gi|68351177|gb|EAN31940.1| hypothetical protein, conserved [Theileria parva] Length = 750 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 102/372 (27%), Positives = 180/372 (48%), Gaps = 36/372 (9%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 ++K++GC N+ DS M + GY ++MD DL+++N+C ++ + + +++ Sbjct: 329 YLKNFGCSHNISDSEYMLGIISESGYAITDTMDSCDLVIINSCTVKNPSEHGMINYI--- 385 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN----VVVGPQTYYRLPELLERA 143 N +K G ++V GC+ Q++ + PI N ++G ++ ++E Sbjct: 386 ----NQGLKLGKK--IIVTGCIPQSD-----KLHPIFNNNNISLLGIMQIEKIVYVIENM 434 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G RVV +E K +L +D RK + + I GC CTFC ++RG+ Sbjct: 435 LNGNRVV----MLEKK--KLPSLDLPKIRKNKLIEIIPISTGCLGSCTFCKTKHSRGVLN 488 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S + ++D I GV EI L +++ A+ G+D + L ++ + + L Sbjct: 489 SYEIESILDRVESCISEGVKEIWLTSEDLGAY---GIDLGTNIITLLHSIIAVLPKDIML 545 Query: 264 RYTTSHPRDMSD-----CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 R +P + C I H ++ ++H+PVQS SD +L+ MNR + ++ I Sbjct: 546 RLGMCNPPYIKKYISEVCEILRHENV---FEFIHIPVQSCSDSVLEKMNREYKLEDFLHI 602 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + I+ P+ I++D I GFP ET +D +AT+D + + + +Y R GT S M Sbjct: 603 VSVIKEKVPNCTIATDIICGFPTETHEDHQATVDTLRDLKLSVINISQYYSRKGTVSSGM 662 Query: 379 LEQVDENVKAER 390 E +D NVK R Sbjct: 663 KE-LDNNVKKNR 673 >gi|111225093|ref|YP_715887.1| hypothetical protein FRAAL5734 [Frankia alni ACN14a] gi|122953811|sp|Q0RDV0|RIMO_FRAAA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|111152625|emb|CAJ64366.1| Conserved hypothetical protein [Frankia alni ACN14a] Length = 545 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 114/429 (26%), Positives = 184/429 (42%), Gaps = 35/429 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 VP+R + + GC N DS + +QG+E V DAD +++NTC + A + Sbjct: 5 VPRRVALVTLGCSRNEVDSEELAGRLAAQGWELVADAADADAVLVNTCGFVDAAKKDSID 64 Query: 83 FLGRIRNLK--NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 L +L+ + G VV GC+A+ G E+ P + V+G Y + E L Sbjct: 65 ALLAADDLRAGDGEPAGAGPRAVVAVGCLAERYGNELAASLPEADAVLGFDAYPSIGEHL 124 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVD--------------------------GGYNRKR 174 + G V ++ D+ L I G R+R Sbjct: 125 DAVLGGATV--PAHTPRDRRTLLPITPVERGASANVAVHVPGHARGVAGGSAAGSPGRRR 182 Query: 175 ---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231 G A L I GCD+ C FC +P RG +SR V+ EA L G E+ L+ +N Sbjct: 183 LTAGPVAALKISSGCDRRCAFCAIPSFRGSHVSRPADDVLAEAEWLAGEGARELVLVSEN 242 Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 ++ GK L G+ LL L+ + G+VR+R P ++ L++ L PYL Sbjct: 243 STSY-GKDL-GDLRALEKLLPQLAAVPGIVRVRTVYLQPAELRPSLLEVLLTTPGLAPYL 300 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 L Q S +L+ M R + + ++DR R + P + S+ IVGFPGET+ D Sbjct: 301 DLSFQHASPAVLRRMRRFGGSEHFLDLLDRGRGLLPGLGARSNVIVGFPGETEADVDILA 360 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVG 411 + ++ F YS GT ++ ++ E R + + + + + +G Sbjct: 361 EFLEAAELDAVGVFGYSDEEGTEAVSLPGKIAEEEIERRRVQITDLVEQLTATRAQERIG 420 Query: 412 QIIEVLIEK 420 ++VL+E+ Sbjct: 421 SRVQVLVEE 429 >gi|332557784|ref|ZP_08412106.1| ribosomal protein S12 methylthiotransferase [Rhodobacter sphaeroides WS8N] gi|332275496|gb|EGJ20811.1| ribosomal protein S12 methylthiotransferase [Rhodobacter sphaeroides WS8N] Length = 455 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 123/451 (27%), Positives = 196/451 (43%), Gaps = 44/451 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 36 SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 92 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ AE + I P V V GP Y ++V+ Sbjct: 93 ----LRENGR--VIVTGCLG-AEPDYITGAHPKVLAVTGPHQY-------------EQVL 132 Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D + D F L G R + +L I EGC+ C FC++P RG SR Sbjct: 133 DAVHGAVPPAPDPFVDLLPATGVRLTPRHFS-YLKISEGCNHTCRFCIIPDMRGRLTSRP 191 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 V+ EA KL++ GV E+ ++ Q+ +A W+G EK L L + VR Sbjct: 192 ERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGP----EKFPILPLARELGRLGAWVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G +++PYL +P Q +LK M R A I Sbjct: 248 LHYVYPYPHVRELIPLMAEG---LVLPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAW 304 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P+I + S FIVG+PGET+ +F+ +D +D+ + F+Y G + + + V Sbjct: 305 RRDCPEITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHV 364 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL 440 VK ER +K + + A VG+ IEV++++ ++ + +P + + Sbjct: 365 APEVKQERWDRFMEKAQAISEAKLAAKVGRRIEVIVDEVDEDGATCRTKADAPEIDGNLF 424 Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELV 468 K GDI+ V + + L+G V Sbjct: 425 IDEGFKGLAPGDILAVEVEEAGEYDLWGRPV 455 >gi|157415263|ref|YP_001482519.1| MiaB-like tRNA modifying protein [Campylobacter jejuni subsp. jejuni 81116] gi|157386227|gb|ABV52542.1| hypothetical protein C8J_0943 [Campylobacter jejuni subsp. jejuni 81116] gi|307747905|gb|ADN91175.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni M1] gi|315932134|gb|EFV11077.1| RNA modification enzyme, MiaB family protein [Campylobacter jejuni subsp. jejuni 327] Length = 416 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 103/410 (25%), Positives = 194/410 (47%), Gaps = 55/410 (13%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ F K++GC+ N+YD+ ++ + + YE +N + A +IV+N+C + A + S Sbjct: 1 MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQ 131 ++ N+ K+G + V++ GC A ++G+E+L + + +N +G + Sbjct: 59 YV-------NTMQKKG--IKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAK 109 Query: 132 T-YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 T +Y L L +D D E + AF+ IQEGCD C Sbjct: 110 TSFYELGNL--------NFIDKDIVCE--------------YENHTKAFVKIQEGCDFAC 147 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 ++C++P RG S ++ + L NG EI L G N+ ++ GL + L Sbjct: 148 SYCIIPSVRGKSRSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTSLGKL 203 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L + +I G+ R+R + P + + ++ D L +LH+ +Q S+++L+ M RR Sbjct: 204 LQKMGQISGIKRIRLGSLEPAQIDESFLEIL-DETWLERHLHIALQHTSEKMLRIMRRRS 262 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 ++ + I S A+ +DFIV PGE+++ ++ + + +F +SPR Sbjct: 263 HTDNDLKLFNTIAS--KGYALGTDFIVAHPGESEEVWQEALKKFKEFPLTHIHAFIFSPR 320 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIE 419 T + M + ++ + ERL L+ + + F Q+ +EVL+E Sbjct: 321 NNTHSATMKDVINGTLAKERLNILKSIVEKNNYEFRKK--NQVPLEVLVE 368 >gi|315058449|gb|ADT72778.1| MiaB family protein [Campylobacter jejuni subsp. jejuni S3] Length = 416 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 104/410 (25%), Positives = 194/410 (47%), Gaps = 55/410 (13%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ F K++GC+ N+YD+ ++ + + YE +N + A +IV+N+C + A + S Sbjct: 1 MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQ 131 ++ N+ K+G + V++ GC A ++G+E+L + + +N +G + Sbjct: 59 YV-------NTMQKKG--IKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAK 109 Query: 132 T-YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 T +Y L L +D D E + AF+ IQEGCD C Sbjct: 110 TSFYELGNL--------NFIDKDIVCE--------------YENHTKAFVKIQEGCDFAC 147 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 ++C++P RG S ++ + L NG EI L G N+ ++ GL T L Sbjct: 148 SYCIIPSVRGKSRSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTTLGKL 203 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L + +I G+ R+R + P + + ++ D L +LH+ +Q S+++L+ M RR Sbjct: 204 LQKMGQILGIKRIRLGSLEPAQLDESFLEIL-DEAWLERHLHIALQHTSEKMLRIMRRRS 262 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 ++ + I S A+ +DFIV PGE+++ ++ + + +F +SPR Sbjct: 263 HTDNDLKLFNTIAS--KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPR 320 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIE 419 T + M + ++ + ERL L+ + + F Q+ +EVL+E Sbjct: 321 NNTHSTTMKDVINGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVLVE 368 >gi|212702220|ref|ZP_03310348.1| hypothetical protein DESPIG_00231 [Desulfovibrio piger ATCC 29098] gi|212674346|gb|EEB34829.1| hypothetical protein DESPIG_00231 [Desulfovibrio piger ATCC 29098] Length = 448 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 106/394 (26%), Positives = 182/394 (46%), Gaps = 30/394 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F+ ++GC++N Y++ + + + ++G + AD++ +N+C I + Sbjct: 5 KFYFITFGCKVNQYETQSLREAWQARGGVECDDPAQADVVCVNSCAITARGERDA----- 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV----VGPQTYYRLPELLE 141 RN + +++ GC A+ E RR + V + PQ RL LL Sbjct: 60 --RNAVFRLRRAAPAARLILTGCAARLF--EDFRRHGHEDCVQPDLILPQGDKRL--LLA 113 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + T + + +I G+ R R V L +Q+GC CT+C+VP TRG Sbjct: 114 GPWTEGELAPTGEAQAPSYPPFAI--SGFRRARPV---LKVQDGCQHRCTYCIVPLTRGR 168 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSL-----S 255 +SR V+ EAR+L+ G EI + G N+ + D G+ F LL L Sbjct: 169 CLSRPPEDVIAEARRLLLAGHAEIMISGINLRQYGRDNADFGD---FWSLLRRLDAALAP 225 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH-TAYE 314 E G R R ++ P + D ++ +L P LH+ +Q S +L+ M R H TA Sbjct: 226 EFAGRGRFRISSLEPSQLDDEGVETLMACRMLCPQLHISLQHASQPVLRRMGRGHYTAAM 285 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 ++ ++R+ + P + + +D I GFPGE ++D +D V + ++ A F YS R GT Sbjct: 286 LQRAVERLHAHWPVMGLGADIIAGFPGEREEDVACLLDFVRETPFSYAHVFPYSRRPGTA 345 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408 + + VK ER ++ + E++ +F A Sbjct: 346 ADRFDGHLPQQVKQERAARVRAAVEERRQAFCQA 379 >gi|13542169|ref|NP_111857.1| 2-methylthioadenine synthetase [Thermoplasma volcanium GSS1] gi|14325601|dbj|BAB60504.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 401 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 119/453 (26%), Positives = 215/453 (47%), Gaps = 64/453 (14%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + + ++YGC +N ++ + ++G V++ +ADL ++ TC + +K + + + Sbjct: 2 KIYFEAYGCTLNQGETALYVNKLLNEGNTLVSNPKEADLSIIGTCAVIKKTEDHM---MA 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RI+NL SR + V V GC+A +G+ ++ NV V +E+ RF Sbjct: 59 RIQNL--SRFGK-----VEVIGCLAPVKGKTMVED----NVSV-----------IEKDRF 96 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 S ++ + +S V+ + + + I +GC C FCV RG +SR Sbjct: 97 --------RSFQEVIDEVSPVNA------EIVSGIPINQGCTGKCNFCVSHIARGKLVSR 142 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++ + + L+ G+ EI + + A+ GK + L+ +++EI RLR Sbjct: 143 KPEKIAGQIKILLQRGIKEIKITSLDTAAY-GKDIG---LRLPHLIRTITEIGDDFRLRV 198 Query: 266 TTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 P+ ++ D LI A+ V +LHLPVQSG D +L+ MNR +T ++ +I + Sbjct: 199 GMMEPKNTLEIVDDLISAYRSEKVF-KFLHLPVQSGDDYVLEVMNREYTVSDFIRITGKF 257 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG------- 375 R PD +S+D I+G+ E DD F T+ L++KI K+SPR T Sbjct: 258 REAFPDSTLSTDLIIGYYAENDDSFEKTVQLIEKIRPEIINVTKFSPRELTADFEKRPKP 317 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWL 435 +N+L++ D + LQ+K +G+ VLI ++GK + ++GR Sbjct: 318 TNILKEQDRMIADMHKEILQEKFSN--------LIGKTEFVLITENGKGRS-MIGRDHAY 368 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +V+ K + +V IT + ++L G ++ Sbjct: 369 RPIVIMDKTRKF-EFHQVEITGFENTSLIGRII 400 >gi|108562712|ref|YP_627028.1| hypothetical protein HPAG1_0287 [Helicobacter pylori HPAG1] gi|107836485|gb|ABF84354.1| hypothetical protein HPAG1_0287 [Helicobacter pylori HPAG1] Length = 418 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 109/395 (27%), Positives = 187/395 (47%), Gaps = 45/395 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+IV+N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIVINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMVRLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258 S +++++ L GV E+ L G NV ++ RG + + L+ LS+I Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++ Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++ I S + AI +DFIVG PGE++ F ++ + F YS R TP S M Sbjct: 272 LEVIAS--KNFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329 Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406 + V +RL ++ K R+ Q+ N Sbjct: 330 TDSVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364 >gi|57237831|ref|YP_179079.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni RM1221] gi|88596372|ref|ZP_01099609.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni 84-25] gi|148926084|ref|ZP_01809770.1| hypothetical protein Cj8486_1074 [Campylobacter jejuni subsp. jejuni CG8486] gi|218562622|ref|YP_002344401.1| putative MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|57166635|gb|AAW35414.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni RM1221] gi|88191213|gb|EAQ95185.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni 84-25] gi|112360328|emb|CAL35124.1| putative MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145845563|gb|EDK22655.1| hypothetical protein Cj8486_1074 [Campylobacter jejuni subsp. jejuni CG8486] gi|284926236|gb|ADC28588.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni IA3902] gi|315928365|gb|EFV07680.1| RNA modification enzyme, MiaB family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 416 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 104/410 (25%), Positives = 194/410 (47%), Gaps = 55/410 (13%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ F K++GC+ N+YD+ ++ + + YE +N + A +IV+N+C + A + S Sbjct: 1 MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQ 131 ++ N+ K+G + V++ GC A ++G+E+L + + +N +G + Sbjct: 59 YV-------NTMQKKG--IKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAK 109 Query: 132 T-YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 T +Y L L +D D E + AF+ IQEGCD C Sbjct: 110 TSFYELGNL--------NFIDKDIVCE--------------YENHTKAFVKIQEGCDFAC 147 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 ++C++P RG S ++ + L NG EI L G N+ ++ GL T L Sbjct: 148 SYCIIPSVRGKSRSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTTLGKL 203 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L + +I G+ R+R + P + + ++ D L +LH+ +Q S+++L+ M RR Sbjct: 204 LQKMGQILGIKRIRLGSLEPAQLDESFLEIL-DEAWLERHLHIALQHTSEKMLRIMRRRS 262 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 ++ + I S A+ +DFIV PGE+++ ++ + + +F +SPR Sbjct: 263 HTDNDLKLFNTIAS--KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPR 320 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIE 419 T + M + ++ + ERL L+ + + F Q+ +EVL+E Sbjct: 321 NNTHSATMKDVINGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVLVE 368 >gi|319793990|ref|YP_004155630.1| miab-like tRNA modifying enzyme ylig [Variovorax paradoxus EPS] gi|315596453|gb|ADU37519.1| MiaB-like tRNA modifying enzyme YliG [Variovorax paradoxus EPS] Length = 468 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 106/382 (27%), Positives = 173/382 (45%), Gaps = 55/382 (14%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS + ++GY+ + + ADL+++NTC + A ++ Sbjct: 15 APKVGFV-SLGCPKALTDSELILTRLSAEGYQTSKTFEGADLVIVNTCGFIDDAVKESLD 73 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE----ILRRSPIVNVVVGPQTYYRLPE 138 +G +N R V+V GC+ G++ + + P V V GP Sbjct: 74 TIGEALA-ENGR--------VIVTGCLGAKTGDQGGNLVRQMHPSVLAVTGPHAT----- 119 Query: 139 LLERARFGKRVVDTDYS----VEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCDKFCT 191 + V+D ++ D F L + G A+L I EGC+ CT Sbjct: 120 --------QEVMDAVHANLPKPHDPFIDLVPNTFGIAGLKLTPRHYAYLKISEGCNHRCT 171 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGL 240 FC++P RG +SR + V+ EA+ L + GV E+ ++ Q+ +A W GK + Sbjct: 172 FCIIPSMRGDLVSRPVGDVLGEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPV 231 Query: 241 DGEKCTFSDLLYSLSEIK----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 K +L+ +L EI VRL Y +P + A G + +PYL +P+Q Sbjct: 232 ---KTRMLELVRTLGEIAEPYGAWVRLHYVYPYPSVDEIIPLMASGQV---LPYLDVPLQ 285 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 +LK M R + + + + R R V P++ I S FI GFPGET+ +F +D + + Sbjct: 286 HSHPDVLKRMKRPASGEKNLERLARWREVCPELVIRSTFIAGFPGETEQEFGHLLDFIRE 345 Query: 357 IGYAQAFSFKYSPRLGTPGSNM 378 +A F YSP G +++ Sbjct: 346 AEIDRAGCFAYSPVEGATANDI 367 >gi|317012127|gb|ADU82735.1| hypothetical protein HPLT_01465 [Helicobacter pylori Lithuania75] Length = 418 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 107/387 (27%), Positives = 185/387 (47%), Gaps = 38/387 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+IV+N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIVINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L D V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARL---------DKEVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258 S +++++ L GV E+ L G NV ++ RG + + L+ LS+I Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++ Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDREL 271 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++ I S + AI +DFIVG PGE+ F ++ + F YS R TP S M Sbjct: 272 LEVIAS--KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSF 405 + V +RL ++ + + +F Sbjct: 330 TDSVSLEDSKKRLNAIKDLILHKNKAF 356 >gi|90083062|dbj|BAE90613.1| unnamed protein product [Macaca fascicularis] Length = 464 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 102/376 (27%), Positives = 180/376 (47%), Gaps = 26/376 (6%) Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162 +V+AGCV QA+ + + ++G Q R+ E++E G V +D R Sbjct: 21 IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETIKGHSVRLLGQK-KDNGRR 76 Query: 163 L--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220 L + +D RK + ++I GC CT+C + RG S + ++VD A++ Sbjct: 77 LGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQE 136 Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRD 272 GVCEI L ++ A+ G+ + LL+ L E+ G+ Y H + Sbjct: 137 GVCEIWLTSEDTGAY-GRDIG---TNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEE 192 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 M+ L + + +LH+PVQ SD +L M R + ++++++D ++ P I I+ Sbjct: 193 MAKIL-----NHPRVYAFLHIPVQPASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIA 247 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 +D I GFPGETD DF+ T+ LV++ + F ++ PR GTP + M EQV VK +R Sbjct: 248 TDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKM-EQVPAQVKKQRTK 306 Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452 L + S + +G+ +VL+ + + V + + + V++ +G +++ Sbjct: 307 DLSRVF--HSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVE 364 Query: 453 VRITDVKISTLYGELV 468 V I + + G+ V Sbjct: 365 VDICESGKHFMKGQPV 380 >gi|257456539|ref|ZP_05621735.1| conserved hypothetical protein [Treponema vincentii ATCC 35580] gi|257446199|gb|EEV21246.1| conserved hypothetical protein [Treponema vincentii ATCC 35580] Length = 498 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 106/389 (27%), Positives = 170/389 (43%), Gaps = 50/389 (12%) Query: 60 DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119 + L +NTC + KA +K R L IKE +++V GC AQ E EI Sbjct: 65 EQTALCFVNTCTVTGKAEQKA-------RRLIRLLIKEHPYAVILVTGCYAQLEAAEIEA 117 Query: 120 RSPIVNVVVGPQT--YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG--------- 168 P V G Q +P G DT + + LS + G Sbjct: 118 LHPHVLAFPGQQKDLLTAIPAYFAELVRGSAYFDTAFFLSALRTYLSGLTGRIPQDEPRH 177 Query: 169 ----------GYNRKRGVT-----------AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 G RK A L IQ+GC+ C +C + RG +S Sbjct: 178 HKPVGDQSGHGIQRKPLFALSSPHFLFHSRALLKIQDGCNDACAYCRIRLARGKSVSLPA 237 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++V++ R + + GV E+TL G N++ +R + D F+ +L + E +R+R ++ Sbjct: 238 AEVLERLRCIEETGVPEVTLTGVNLSQYRSEAGD-----FAGILKLILE-NSTIRVRISS 291 Query: 268 SHPRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + + L+ AH + P+ HL VQSGSD +LK+M+R + + +R V Sbjct: 292 LYPDRIDEALVPLLAHPRI---CPHFHLSVQSGSDAVLKTMHRGYKNTTVYHAVSELRRV 348 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 + D I +D I GFPGET+ DF T + ++ +A +F +S R GT M +V E Sbjct: 349 KGDPFIGADIITGFPGETEADFEETYRMCRELNFAGIHAFPFSARPGTEAWKMQPKVPER 408 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQII 414 + +R+ L + Q ++ G+ + Sbjct: 409 IAGQRVKKLNELAETQAAAYLHGWDGKFV 437 >gi|119357557|ref|YP_912201.1| MiaB-like tRNA modifying enzyme YliG [Chlorobium phaeobacteroides DSM 266] gi|238065324|sp|A1BHA0|RIMO_CHLPD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|119354906|gb|ABL65777.1| SSU ribosomal protein S12P methylthiotransferase [Chlorobium phaeobacteroides DSM 266] Length = 432 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 104/356 (29%), Positives = 172/356 (48%), Gaps = 26/356 (7%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 F+ S GC N DS R+ + G D AD I++NTC E A E+ + + Sbjct: 7 FLLSLGCSKNTVDSERLMAQAEASGITFTEEADLADTILINTCGFIEDAKEESIAEILAA 66 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 K I G V V GC+++ E+ P ++ G + LP LL+ Sbjct: 67 VEKKTQGIVSG----VYVMGCLSELYRTEMREELPEIDGFFGTR---ELPALLQ------ 113 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 + Y ++ ++ S++ + ++L I EGC++ C+FC +P RG S+ + Sbjct: 114 -AIGAQYR-DELYDHRSLLTPPH------ISYLKIAEGCNRSCSFCSIPKIRGRYRSQPM 165 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYT 266 Q++ EA L GV E+ L+ Q+ + + G+ L G +LL LS+++ +RL Y Sbjct: 166 EQLLREAALLQKKGVRELNLIAQDTSIY-GRDLYGTP-MLRELLVRLSDMEFRWIRLLY- 222 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P D +I A + + YL LP+Q +DRIL+SMNR T E +++D IR+ Sbjct: 223 -AYPLDFPLEVITAMSERKNICNYLDLPLQHCNDRILRSMNRGITKTETVRLLDTIRAAN 281 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 PDI + + +VGFPGET +F M ++ + + + F Y P + + V Sbjct: 282 PDIRLRTTMLVGFPGETRAEFDELMQFIETMRFDRLGCFPYCHEEHAPSYALEDTV 337 >gi|86152771|ref|ZP_01070976.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612428|ref|YP_001000685.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni 81-176] gi|167005607|ref|ZP_02271365.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni 81-176] gi|85843656|gb|EAQ60866.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249241|gb|EAQ72202.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni 81-176] Length = 416 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 103/410 (25%), Positives = 194/410 (47%), Gaps = 55/410 (13%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ F K++GC+ N+YD+ ++ + + YE +N + A +IV+N+C + A + S Sbjct: 1 MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQ 131 ++ N+ K+G + V++ GC A ++G+E+L + + +N +G + Sbjct: 59 YV-------NTMQKKG--IKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAK 109 Query: 132 T-YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 T +Y L L +D D E + AF+ IQEGCD C Sbjct: 110 TSFYELGNL--------NFIDKDIVCE--------------YENHTKAFVKIQEGCDFAC 147 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 ++C++P RG S ++ + L NG EI L G N+ ++ GL + L Sbjct: 148 SYCIIPSVRGKSRSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTSLGKL 203 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L + +I G+ R+R + P + + ++ D L +LH+ +Q S+++L+ M RR Sbjct: 204 LQKMGQISGIKRIRLGSLEPAQLDESFLEIL-DEAWLERHLHIALQHTSEKMLRIMRRRS 262 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 ++ + I S A+ +DFIV PGE+++ ++ + + +F +SPR Sbjct: 263 HTDNDLKLFNTIAS--KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPR 320 Query: 371 LGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI-IEVLIE 419 T + M + ++ + ERL L+ + + F Q+ +EVL+E Sbjct: 321 NNTHSATMKDVINGTLAKERLNTLKSIVEKNNYEFRKK--NQVSLEVLVE 368 >gi|299145602|ref|ZP_07038670.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_23] gi|298516093|gb|EFI39974.1| 2-methylthioadenine synthetase [Bacteroides sp. 3_1_23] Length = 436 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 117/450 (26%), Positives = 211/450 (46%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ GY + ++ ++ V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ + KE GDL + V GC+++ +E+ P V+ G + ELL+ GK Sbjct: 66 -LEFAERKEEGDLKKLFVMGCLSERYLKELAVEIPQVDKFYGK---FNWKELLQD--LGK 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D Y ER Y A+L I EGCD+ C++C +P G IS+ + Sbjct: 120 VYHDELY-----IERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGHHISKPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE R L+ GV E ++ Q + + G+D +K +L+ +S+I G+ +R Sbjct: 168 EEILDEVRYLVSQGVKEFQVIAQELTYY---GIDRYKKQMLPELIERISDIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + D + Y+ + +Q SD +LK M R+ + + Q+I++ R Sbjct: 225 YAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYQLIEQFRREV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385 P I + + +VG PGET++DF + V K+ + + +F YS GT + E + + Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEDLKEFVRKVRFDRMGAFAYSEEEGTYAAETYEDSIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440 VK RL L + + +G+ ++V+I++ E +GR SP + VL Sbjct: 345 VKQARLDELMDIQQGISAELSAEKIGKQMKVIIDR--LEGDYYIGRTEFDSPEVDPEVLI 402 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG +V + + LY +++ Sbjct: 403 DRSERELKIGQFYQVEVVNADDFDLYAKII 432 >gi|237752873|ref|ZP_04583353.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC BAA-430] gi|229375140|gb|EEO25231.1| 2-methylthioadenine synthetase [Helicobacter winghamensis ATCC BAA-430] Length = 443 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 110/467 (23%), Positives = 220/467 (47%), Gaps = 46/467 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++F + S GC N+ DS M YE + +AD++++NTC E A ++ Sbjct: 1 MSKKFHLISLGCTKNLVDSEVMLGCL--SAYENTQDVSEADVVIVNTCGFIEAAKQE--- 55 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 I+ L N+ + + ++V +GC+++ +E+ + P ++++ G Y ++ ++++ Sbjct: 56 ---SIQTLLNALEAKKDEAILVASGCLSERYAKELKQEIPEIDIITGVGDYDKIDVMIQK 112 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + G+ + + V E V G + A++ + EGC++ C+FC +P +G Sbjct: 113 RKKGEEICQSQNGVFLANETTKRVISGSK----IHAYIKLSEGCNQKCSFCAIPSFKGKL 168 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLV 261 SR+L + E + L+ G + + + Q+ +++ R G+ D L +L IKG+ Sbjct: 169 HSRTLESTLKEVQALVKQGFRDFSFISQDSSSYMRDLGV-------KDGLVAL--IKGID 219 Query: 262 RL----------RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 +L R +P S LI+A D V + Y +P+Q S +LK+M R H Sbjct: 220 KLVENGLDLRSARILYLYPSTTSKELIQAICDSKVFVNYFDMPLQHASPSVLKTMGRSH- 278 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 ++ ++ +R P+ + + FI+G PGE++ DF +++ + + F +S Sbjct: 279 --HFKDLLKEMRKT-PNSFVRTSFIIGHPGESESDFEELCAFIEEFPFDRMNLFAFSKEE 335 Query: 372 GTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-----KG 426 GT + M EQ+ + RL + +Q + A + I V+IE +E Sbjct: 336 GTKSAEM-EQIPQKTINARLKAINAIFTKQYQADLKALKDEEIVVIIEGKSEESEYFYSA 394 Query: 427 KLVGRSPWLQSVVLNSKNHNIGDI----IKVRITDVKISTLYGELVV 469 + V +P + +L + + G++ KV+IT+V + G ++ Sbjct: 395 RDVRFAPSIDGEILINDSLLEGELEAGYYKVKITEVVGENVLGRVIA 441 >gi|313203646|ref|YP_004042303.1| SSU ribosomal protein s12p methylthiotransferase [Paludibacter propionicigenes WB4] gi|312442962|gb|ADQ79318.1| SSU ribosomal protein S12P methylthiotransferase [Paludibacter propionicigenes WB4] Length = 434 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 116/453 (25%), Positives = 219/453 (48%), Gaps = 47/453 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGR 86 V + GC N+ DS ++ F + GY+ + + D +++++NTC A E+ + + + Sbjct: 12 VVTLGCSKNLVDSEQLMRQFDALGYQVRHDAEKPDGEIVIVNTCGFIGDAKEESINTILQ 71 Query: 87 IRNL-KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +L K ++I G L V+ GC+++ E+ P V+ G Y ++L+ Sbjct: 72 FADLRKQNKI---GKLFVM--GCLSERYLNELSLEIPEVDKFYGKFNY---TDILKE--- 120 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + +Y + + ER Y A++ I EGC++ C++C +P G SR Sbjct: 121 ----IGQEYRADLRLERKLTTPNHY-------AYIKISEGCNRTCSYCAIPIITGRHRSR 169 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC-TFSDLLYSLSEIKGLVRLR 264 + + +E + L+ +GV E L+ Q+++ + G D K ++L LS+I+G+ LR Sbjct: 170 FIEDIENEVKGLVASGVKEFQLIAQDLSYY---GQDRYKSLKLAELTERLSDIQGVEWLR 226 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++P ++K + D + YL + +Q SD +L M R T+ + ++ID+IR Sbjct: 227 LHYAYPTQFPYDILKVMRERDNVCNYLDIALQHVSDNMLGKMRRNITSAQTYELIDKIRQ 286 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-----SNML 379 PDI + + ++G PGET++D + V K+ + + +F +S GT N+ Sbjct: 287 EVPDIHLRTTLLLGHPGETEEDVEELKNFVQKVRFERLGAFAFSNEEGTYAYKTYEDNIP 346 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435 ++V +N + ++ LQ+ + N +G+ ++V+I++ E VGR SP + Sbjct: 347 DEVKQN-RVNEIMSLQQTI---SAEINQTKIGKTLKVMIDR--VEDEYFVGRTEYDSPEV 400 Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYG 465 VL +++ G+ RI D LYG Sbjct: 401 DPEVLIPTSTEGVRQGEFFNARIFDATDFDLYG 433 >gi|260170245|ref|ZP_05756657.1| putative Fe-S oxidoreductase [Bacteroides sp. D2] gi|315918608|ref|ZP_07914848.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692483|gb|EFS29318.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 436 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 117/450 (26%), Positives = 211/450 (46%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ GY + ++ ++ V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ + KE GDL + V GC+++ +E+ P V+ G + ELL+ GK Sbjct: 66 -LEFAERKEEGDLKKLFVMGCLSERYLKELAVEIPQVDKFYGK---FNWKELLQD--LGK 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D Y ER Y A+L I EGCD+ C++C +P G IS+ + Sbjct: 120 VYHDELY-----IERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGHHISKPI 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE R L+ GV E ++ Q + + G+D +K +L+ +S+I G+ +R Sbjct: 168 EEILDEVRYLVSQGVKEFQVIAQELTYY---GIDRYKKQMLPELIERISDIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + D + Y+ + +Q SD +LK M R+ + + Q+I++ R Sbjct: 225 YAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYQLIEQFRKEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385 P I + + +VG PGET++DF + V K+ + + +F YS GT + E + + Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEDLKEFVRKVRFDRMGAFAYSEEEGTYAAETYEDSIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440 VK RL L + + +G+ ++V+I++ E +GR SP + VL Sbjct: 345 VKQARLDELMDIQQGISAELSAEKIGKQMKVIIDR--LEGDYYIGRTEFDSPEVDPEVLI 402 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG +V + + LY +++ Sbjct: 403 DRSERELKIGQFYQVEVMNADDFDLYAKII 432 >gi|160882776|ref|ZP_02063779.1| hypothetical protein BACOVA_00737 [Bacteroides ovatus ATCC 8483] gi|156111800|gb|EDO13545.1| hypothetical protein BACOVA_00737 [Bacteroides ovatus ATCC 8483] Length = 436 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 117/450 (26%), Positives = 211/450 (46%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ GY + ++ ++ V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ + KE GDL + V GC+++ +E+ P V+ G + ELL+ GK Sbjct: 66 -LEFAERKEEGDLKKLFVMGCLSERYLKELAVEIPQVDKFYGK---FNWKELLQD--LGK 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D Y ER Y A+L I EGCD+ C++C +P G IS+ + Sbjct: 120 VYHDELY-----IERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGHHISKPI 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE R L+ GV E ++ Q + + G+D +K +L+ +S+I G+ +R Sbjct: 168 EEILDEVRYLVSQGVKEFQVIAQELTYY---GIDRYKKQMLPELIERISDIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + D + Y+ + +Q SD +LK M R+ + + Q+I++ R Sbjct: 225 YAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLKLMRRQVSKEDTYQLIEQFRREV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385 P I + + +VG PGET++DF + V K+ + + +F YS GT + E + + Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEDLKEFVRKVRFDRMGAFAYSEEEGTYAAETYEDSIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440 VK RL L + + +G+ ++V+I++ E +GR SP + VL Sbjct: 345 VKQARLDELMDIQQGISAELSAEKIGKQMKVIIDR--LEGDYYIGRTEFDSPEVDPEVLI 402 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG +V + + LY +++ Sbjct: 403 DRSERELKIGQFYQVEVVNADDFDLYAKII 432 >gi|322372210|ref|ZP_08046751.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus paucihalophilus DX253] gi|320548219|gb|EFW89892.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus paucihalophilus DX253] Length = 417 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 121/458 (26%), Positives = 208/458 (45%), Gaps = 58/458 (12%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R+ +++YGC N +S ++E G+ RV + AD+ ++NTC + EK + + Sbjct: 3 RYHIETYGCTSNRGESRQIESALRDAGHYRVEGPEQADVAIMNTCTVVEKTER---NMVR 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R + L++ E DL ++ GC+A A+G+E R+ V+ + + +P + Sbjct: 60 RAKELQS----ETADL--IITGCMALAQGDEF--RTEDVDAQI--MHWDDVPTAVTNGE- 108 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 VE ++DG V L I GC C++C+ + G S Sbjct: 109 ---CPTPGPGVE------PVLDG-------VVGILPIARGCMSDCSYCITKHATGKIDSP 152 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLR 264 S+ + V++AR L+ G E+ + GQ+ + G D GE+ L +EI+G R+R Sbjct: 153 SVEENVEKARALVHAGAKELRITGQDTGVY---GWDRGERKLHVLLDRICNEIEGDFRVR 209 Query: 265 YTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 ++P+ + + L + + D L ++H PVQSGS+ +L M R+H EY +I++ Sbjct: 210 VGMANPKGVHGIREELAQVFAENDELYNFIHAPVQSGSNDVLGDMRRQHQVEEYVEIVET 269 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +S+DFIVGFP ETDDD +M L+ + + ++S R T + M Sbjct: 270 FDEYLDYWTLSTDFIVGFPTETDDDHEQSMALLRETRPEKLNVTRFSKRPNTDAAKM--- 326 Query: 382 VDENVKAERLLCLQKKLREQQVS---------FNDACVGQIIEVLIEKHGKEKGKLVGRS 432 + L +KK R +++S D VG V++ + G Sbjct: 327 -------KGLGGTKKKERSKEMSELKMDIVGAAYDEMVGTEKRVMVVEEGTGDSVKCRDE 379 Query: 433 PWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + Q +V N+ H I GD + V +T + +G V Sbjct: 380 AYRQIIVQNATEHGIEPGDFLDVEVTSHQTVYAFGTPV 417 >gi|84997025|ref|XP_953234.1| hypothetical protein [Theileria annulata strain Ankara] gi|65304230|emb|CAI76609.1| hypothetical protein, conserved [Theileria annulata] Length = 750 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 102/379 (26%), Positives = 185/379 (48%), Gaps = 37/379 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++K++GC N+ DS M + GY ++++ D++++N+C ++ + + +++ Sbjct: 316 KIYLKNFGCSHNISDSEYMLGLISESGYTITENIEECDVVIINSCTVKNPSEHAMVNYIN 375 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV--------VVGPQTYYRLP 137 + L N RI +V GC+ Q++ + + + + NV VG ++ Sbjct: 376 QGLKL-NKRI--------IVTGCIPQSDKKHPVLSTSVTNVQFLNKLNNSVGIMQIDKII 426 Query: 138 ELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPY 197 ++E G RVV +E K L +D RK + + I GC CTFC + Sbjct: 427 YVIENVMNGNRVV----LLEKK--SLPSLDLPKIRKNKLIEIIPISTGCLGSCTFCKTKH 480 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 +RG+ S + ++D + GV EI L +++ A+ G+D + LLYS+ I Sbjct: 481 SRGVLNSYEIEAILDRVESSVSEGVKEIWLTSEDLGAY---GIDLGTNIIT-LLYSIINI 536 Query: 258 -KGLVRLRYTTSHPRDMSD-----CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 + LR +P + C I +H D + ++H+PVQS SD +L+ MNR + Sbjct: 537 LPQNIMLRLGMCNPPYIKKYINEICEILSH---DNVFEFIHIPVQSCSDAVLEKMNREYL 593 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 ++ I+ I++ P+ I++D I GFP ET+ D + T+ + ++ + +Y R Sbjct: 594 LEDFLYIVSVIKAKLPNCTIATDIICGFPTETEQDHQITVQTLQQLKLSIINISQYYSRK 653 Query: 372 GTPGSNMLEQVDENVKAER 390 GT S+M E +D NVK R Sbjct: 654 GTISSSMKE-LDNNVKKNR 671 >gi|77462893|ref|YP_352397.1| MiaB-like radical SAM protein [Rhodobacter sphaeroides 2.4.1] gi|77387311|gb|ABA78496.1| MiaB-like Radical SAM protein [Rhodobacter sphaeroides 2.4.1] Length = 436 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 115/398 (28%), Positives = 177/398 (44%), Gaps = 39/398 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 17 SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKVESLEAIGEA--- 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ AE + I P V V GP Y ++V+ Sbjct: 74 ----LRENGR--VIVTGCLG-AEPDYITGAHPKVLAVTGPHQY-------------EQVL 113 Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D + D F L G R + +L I EGC+ C FC++P RG SR Sbjct: 114 DAVHGAVPPAPDPFVDLLPATGVRLTPRHFS-YLKISEGCNHTCRFCIIPDMRGRLASRP 172 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 V+ EA KL++ GV E+ ++ Q+ +A W+G EK L L + VR Sbjct: 173 ERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGP----EKFPILPLARELGRLGAWVR 228 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G +++PYL +P Q +LK M R A I Sbjct: 229 LHYVYPYPHVRELIPLMAEG---LVLPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAW 285 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P+IA+ S FIVG+PGET+ +F+ +D +D+ + F+Y G + + + V Sbjct: 286 RRDCPEIALRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHV 345 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 VK ER +K + A VG+ IEV++++ Sbjct: 346 APEVKQERWDRFMEKAQAISEVKLAAKVGRRIEVIVDE 383 >gi|73669341|ref|YP_305356.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro] gi|72396503|gb|AAZ70776.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro] Length = 442 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 117/449 (26%), Positives = 211/449 (46%), Gaps = 24/449 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERV--NSMDDADLIVLNTCHIREKAAEKVYSF 83 + +++S+GC + + M+ G++ + + D A++ + N+C ++ +K+ Sbjct: 2 KVYLESFGCSASQASAEIMKASVERLGHKLLGPEAADQAEVYICNSCTVKYTTEQKI--- 58 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE-- 141 L +IR++ ++ V+V+GC+ + + E+IL +P +++ G RL ELL Sbjct: 59 LYKIRSMGEKNVE------VIVSGCMPEVQLEDILHANPEAHIL-GVNAISRLGELLSLI 111 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R K + ++ E + ++ R I +GC+ C++C+V Y RG Sbjct: 112 EQRKMKGLPGGEHLEFRASEPVGFLNVPRERSNPNIHICQISQGCNFACSYCIVKYARGK 171 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S + +V++ R + G EI L Q+ + + G+D +LL +SEI G Sbjct: 172 LHSFPPNDIVEDIRAAVAGGCREIWLTSQDDSQY---GMD-TGVRLPELLRMISEIPGDF 227 Query: 262 RLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 ++R +P + D L+ A D D + LHLP+QS S +LK MNR H I Sbjct: 228 KVRVGMMNPFSVLPILDDLVDAF-DSDKVFKLLHLPIQSASHSVLKRMNRLHKMDVVDMI 286 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I + R+ D+++ +D IVGF ETDD+F T++ V K + +YSPR T + Sbjct: 287 ITKFRARFEDLSLFTDIIVGFCDETDDEFEETVEWVQKYRPEKVNISRYSPRPHTKAFS- 345 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 +D + +R L K + ++ A +G V + K+ E G ++ R+ + V Sbjct: 346 FRNLDSRILVQRSHELHKVCEQIKLGSKQAMIGWKGRVFVSKY-TEIGDVLTRTDAYRPV 404 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGEL 467 V++ N G + I K G+L Sbjct: 405 VISGSNLKPGQHANIEIVAAKPGYFLGKL 433 >gi|153806285|ref|ZP_01958953.1| hypothetical protein BACCAC_00541 [Bacteroides caccae ATCC 43185] gi|149130962|gb|EDM22168.1| hypothetical protein BACCAC_00541 [Bacteroides caccae ATCC 43185] Length = 436 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 120/456 (26%), Positives = 211/456 (46%), Gaps = 39/456 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYS 82 +R + + GC N+ DS ++ GY + + ++ V+NTC A E+ + Sbjct: 4 KRIDIITLGCSKNLVDSEQLMRQLEEVGYSVTHDTETPQGEIAVINTCGFIGDAKEESIN 63 Query: 83 FLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L+ ++ KE GDL + V GC+++ E+ P V+ G + ELL Sbjct: 64 MI-----LEFAKRKEEGDLKKLFVMGCLSERYLRELAIEIPQVDKFYGK---FNWKELLH 115 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 GK Y E ER Y A+L I EGCD+ C++C +P G Sbjct: 116 D--LGK-----SYHEELYIERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGR 161 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 IS+ + +++DE R L+ GV E ++ Q + + G+D +K +L+ +SEI G+ Sbjct: 162 HISKPIEEILDEVRYLVSQGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISEIPGV 218 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++P L + + + Y+ + +Q SD +LK M R+ T + ++I+ Sbjct: 219 EWIRLHYAYPAHFPIDLFRVMRERGNVCKYMDIALQHISDNMLKLMRRQVTKEDTYRLIE 278 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + R P I + + +VG PGET++DF + V K+ + + +F YS GT + E Sbjct: 279 QFRKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAETYE 338 Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435 + + VK RL L + + VG+ ++++I++ E +GR SP + Sbjct: 339 DSIPQKVKQARLDELMDIQQGISAELSAEKVGKQMKIIIDR--LEGDYYIGRTEFDSPEV 396 Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468 VL + K IG +V + D LY +++ Sbjct: 397 DPEVLINCSEKELEIGKFYQVEVVDADDFDLYAKII 432 >gi|297379507|gb|ADI34394.1| RNA modification enzyme, MiaB family [Helicobacter pylori v225d] Length = 418 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 108/393 (27%), Positives = 186/393 (47%), Gaps = 41/393 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINTLLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260 S +++++ L GV E+ L G NV ++ + KG + L+ LS+I GL Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQITGL 214 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++++ Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRKLLE 273 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 I S + AI +DFIVG PGE+ F ++ + F YS R TP S M + Sbjct: 274 VIAS--KNFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331 Query: 381 QVDENVKAERLLCLQ-------KKLREQQVSFN 406 V +RL ++ K R+ Q+ N Sbjct: 332 SVSLEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364 >gi|238066633|sp|Q3J3Y8|RIMO_RHOS4 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO Length = 455 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 115/398 (28%), Positives = 177/398 (44%), Gaps = 39/398 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 36 SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKVESLEAIGEA--- 92 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ AE + I P V V GP Y ++V+ Sbjct: 93 ----LRENGR--VIVTGCLG-AEPDYITGAHPKVLAVTGPHQY-------------EQVL 132 Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D + D F L G R + +L I EGC+ C FC++P RG SR Sbjct: 133 DAVHGAVPPAPDPFVDLLPATGVRLTPRHFS-YLKISEGCNHTCRFCIIPDMRGRLASRP 191 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 V+ EA KL++ GV E+ ++ Q+ +A W+G EK L L + VR Sbjct: 192 ERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGP----EKFPILPLARELGRLGAWVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G +++PYL +P Q +LK M R A I Sbjct: 248 LHYVYPYPHVRELIPLMAEG---LVLPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAW 304 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P+IA+ S FIVG+PGET+ +F+ +D +D+ + F+Y G + + + V Sbjct: 305 RRDCPEIALRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHV 364 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 VK ER +K + A VG+ IEV++++ Sbjct: 365 APEVKQERWDRFMEKAQAISEVKLAAKVGRRIEVIVDE 402 >gi|295084184|emb|CBK65707.1| SSU ribosomal protein S12P methylthiotransferase [Bacteroides xylanisolvens XB1A] Length = 436 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 116/456 (25%), Positives = 215/456 (47%), Gaps = 39/456 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYS 82 +R + + GC N+ DS ++ GY + ++ ++ V+NTC A E+ + Sbjct: 4 KRIDIITLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESIN 63 Query: 83 FLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L+ + KE GDL + V GC+++ +E+ P V+ G + ELL+ Sbjct: 64 MI-----LEFAERKEEGDLKKLFVMGCLSERYLKELAVEIPQVDKFYGK---FNWKELLQ 115 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 GK D Y ER Y A+L I EGCD+ C++C +P G Sbjct: 116 D--LGKVYHDELY-----IERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGR 161 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGL 260 IS+ + +++DE R L+ GV E ++ Q + + G+D +K +L+ +S+I G+ Sbjct: 162 HISKPMEEILDEVRYLVSQGVKEFQVIAQELTYY---GIDRYKKQMLPELIERISDIPGV 218 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++P L + + D + Y+ + +Q SD +L+ M R+ + + ++I+ Sbjct: 219 EWIRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLQLMRRQVSKEDTYRLIE 278 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + R P I + + +VG PGET++DF + V K+ + + +F YS GT + E Sbjct: 279 QFRKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAEAYE 338 Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435 + + VK RL L + + +G+ ++++I++ E +GR SP + Sbjct: 339 DSIPQEVKQARLDELMDIQQGISAELSAEKIGKQMKIIIDR--LEGDYYIGRTEFDSPEV 396 Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468 VL + + IG +V +T+ LY +++ Sbjct: 397 DPEVLVKRSERELKIGQFYQVEVTNADDFDLYAKII 432 >gi|315638362|ref|ZP_07893541.1| Fe-S oxidoreductase [Campylobacter upsaliensis JV21] gi|315481573|gb|EFU72198.1| Fe-S oxidoreductase [Campylobacter upsaliensis JV21] Length = 436 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 99/370 (26%), Positives = 182/370 (49%), Gaps = 21/370 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++ S GC N+ DS M + Y + AD++++NTC E A ++ + Sbjct: 4 LYLHSLGCNKNLVDSEIMLGRL--ENYTLCDEPKRADVLIVNTCGFIESAKKES---IEA 58 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 I NL R K L+VV GC+ Q EE++R P V++ G + ++ L+ + + Sbjct: 59 ILNLHKERKKNS---LLVVTGCLMQRYKEELMRALPEVDLFTGVGDFEKIDTLILKKQ-- 113 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++ Y E+ +R ++ G + AF+ I EGC++ C FC +P+ +G SR+ Sbjct: 114 NLFSNSTYLQEEGIKR--VITGSNSH-----AFIKISEGCNQSCAFCAIPHFKGRLKSRT 166 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +S ++ E LI G + + + Q+ +++ G+K L+ + ++KG+ R Sbjct: 167 ISSIIKELESLIAKGYKDFSFIAQDSSSYLFD--QGQKDGLLRLIEEVEKLKGIRAARIL 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P +S+ +++ V + Y +P+Q SD++LK M R + +++ +R + Sbjct: 225 YLYPSTLSEEVVRKIIASKVFVNYFDMPLQHISDKMLKVMKRGSKKEQILKLLKMMRGAK 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 D + + FIVG PGE+++DFR + V+ + + F YS T M EQV + + Sbjct: 285 -DSFLRTGFIVGHPGESEEDFRELCEFVEGFDFDRISVFGYSKEEDTLAFEM-EQVPKKI 342 Query: 387 KAERLLCLQK 396 RL L+K Sbjct: 343 INARLKILEK 352 >gi|66475406|ref|XP_627519.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa II] gi|32398737|emb|CAD98697.1| conserved hypothetical transmembrane protein [Cryptosporidium parvum] gi|46228975|gb|EAK89824.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa II] Length = 543 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 116/446 (26%), Positives = 206/446 (46%), Gaps = 35/446 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + VK++GC N DS M + GY V +D+ +LIV+N+C ++ + + + + Sbjct: 103 KIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSCQNLI- 161 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAE-GEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 L S+ K VVV GCV QA+ L+ I+ G + +R+ E++E Sbjct: 162 ---ELAKSKRK-----FVVVTGCVPQADINLNFLKDVSII----GVRNIHRIVEVVELTL 209 Query: 145 FGKRVVDTDYSVEDK----FERLSIVDGGYN----RKRGVTAFLTIQEGCDKFCTFCVVP 196 G V+ +E K + L I + R+ +TI GC CT+C Sbjct: 210 QGNIVLLIPDKMEGKSGQLIDSLEISLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTK 269 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 ++RG S + ++ + ++ GV + L +++ A+ GK + S+LL + + Sbjct: 270 HSRGDLGSYPVETIIQRINQSLNEGVKQFWLTSEDIGAY-GKDIG---TNLSELLREILK 325 Query: 257 IKGL-VRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 I + +R ++P D D +I +V +LH+PVQSGS+RIL M R + Sbjct: 326 ILPQDIMIRIGMTNPPYILDQIDEIIDIMKHPNVF-EFLHIPVQSGSNRILDLMKRDYVI 384 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 E+ ++D I P I++D I GFPGE+D D +++L++K + K+ PR G Sbjct: 385 EEFSLLVDSILKEIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPG 444 Query: 373 TPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 TP + M + V V R + + + F + ++++V +H + V Sbjct: 445 TPAAKM-KPVPNGVSKSRSSEITNTFQSFNHNEYIFENLPDDKVVKVWFIEHSERSNHTV 503 Query: 430 GRSPWLQSVVLNSKNHNIGDIIKVRI 455 G + V++N N+ +G V++ Sbjct: 504 GHTKNYNKVLVNMDNNLLGKCAMVKL 529 >gi|126461784|ref|YP_001042898.1| ribosomal protein S12 methylthiotransferase [Rhodobacter sphaeroides ATCC 17029] gi|238066580|sp|A3PIG0|RIMO_RHOS1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|126103448|gb|ABN76126.1| MiaB-like tRNA modifying enzyme YliG [Rhodobacter sphaeroides ATCC 17029] Length = 455 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 122/451 (27%), Positives = 196/451 (43%), Gaps = 44/451 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 36 SLGCPKALVDSERILTRLRAEGYAISPDYAGADAVIVNTCGFLDSAKAESLEAIGEA--- 92 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ AE + + P V V GP Y ++V+ Sbjct: 93 ----LRENGR--VIVTGCLG-AEPDYVTGAHPKVLAVTGPHQY-------------EQVL 132 Query: 151 DTDY----SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D + D F L G R + +L I EGC+ C FC++P RG SR Sbjct: 133 DAVHGAVPPAPDPFVDLLPATGVRLTPRHFS-YLKISEGCNHTCRFCIIPDMRGRLASRP 191 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNA----WRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 V+ EA KL++ GV E+ ++ Q+ +A W+G EK L L + VR Sbjct: 192 ERAVLREAEKLVEAGVRELLVISQDTSAYGTDWKGP----EKFPILPLARELGRLGAWVR 247 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 L Y +P + A G +++PYL +P Q +LK M R A I Sbjct: 248 LHYVYPYPHVRELIPLMAEG---LVLPYLDIPFQHAHPEVLKRMARPAAAARTLDEIAAW 304 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R P+I + S FIVG+PGET+ +F+ +D +D+ + F+Y G + + + V Sbjct: 305 RRDCPEITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVAGARSNALPDHV 364 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL 440 VK ER +K + + A VG+ IEV++++ ++ + +P + + Sbjct: 365 APEVKQERWDRFMEKAQAISEAKLAAKVGRRIEVIVDEVDEDGATCRTKADAPEIDGNLF 424 Query: 441 ---NSKNHNIGDIIKVRITDVKISTLYGELV 468 K GDI+ V + + L+G V Sbjct: 425 IDEGFKGLAPGDILTVEVEEAGEYDLWGRPV 455 >gi|188527091|ref|YP_001909778.1| hypothetical protein HPSH_01480 [Helicobacter pylori Shi470] gi|188143331|gb|ACD47748.1| hypothetical protein HPSH_01480 [Helicobacter pylori Shi470] Length = 418 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 110/393 (27%), Positives = 187/393 (47%), Gaps = 41/393 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260 S +++++ L GV E+ L G NV ++ + KG + L+ LS+I GL Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDKG-----SNIARLIKKLSQITGL 214 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++++ Sbjct: 215 KRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLEKMNRRNRTKSDRELLE 273 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-- 378 I S + AI +DFIVG PGE+ F ++ + F YS R TP S M Sbjct: 274 VIAS--KNFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331 Query: 379 ---LEQVDENVKAERLLCLQKK--LREQQVSFN 406 LE + + A + L L K R+ Q+ N Sbjct: 332 SVILEDSKKRLNAIKDLILHKNKAFRQLQLKLN 364 >gi|329963574|ref|ZP_08301053.1| ribosomal protein S12 methylthiotransferase RimO [Bacteroides fluxus YIT 12057] gi|328528563|gb|EGF55534.1| ribosomal protein S12 methylthiotransferase RimO [Bacteroides fluxus YIT 12057] Length = 432 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 118/449 (26%), Positives = 200/449 (44%), Gaps = 37/449 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS + GY + + V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEHLMRQLEEAGYHVTHDAQHPKGQIAVINTCGFIGDAKEESINMILEFA 69 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 K +EGG + V GC+++ +E+ P V+ G + L + L +A Sbjct: 70 QAK----EEGGLEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGKA----- 120 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 Y E ER Y A+L I EGCD+ C++C +P G +SR + Sbjct: 121 -----YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGKHVSRPME 168 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 +++DE R L+ GV E ++ Q + + G+D +K +L+ +S+I G+ +R Sbjct: 169 EILDEVRYLVAGGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISDIPGVEWIRLHY 225 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 ++P + L + + + Y+ + +Q SD +L M R T E Q+I+R R P Sbjct: 226 AYPAHFPEDLFRVMRERPNVCKYMDIALQHISDNMLGKMRRHVTKAETYQLIERFRKEVP 285 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-DENV 386 I + + +VG PGET+ DF + V K + + +F YS GT + E V V Sbjct: 286 GIHLRTTLMVGHPGETEADFEELKEFVRKARFDRMGAFAYSEEEGTYAAATYEDVIPREV 345 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL-- 440 K RL L + + A VG+ ++V+I++ E VGR SP + VL Sbjct: 346 KQARLDELMAIQQGISAELSAAKVGKRMKVIIDR--LEGDYYVGRTEFDSPEVDPEVLIE 403 Query: 441 -NSKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG+ +V + + L+G ++ Sbjct: 404 CEDETLHIGNFYQVEVINSDDFDLFGRII 432 >gi|224436696|ref|ZP_03657700.1| hypothetical protein HcinC1_02049 [Helicobacter cinaedi CCUG 18818] gi|313143194|ref|ZP_07805387.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128225|gb|EFR45842.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 427 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 103/390 (26%), Positives = 183/390 (46%), Gaps = 39/390 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + K++GC+ N++D+ M+ +E V +AD++++N+C + A V +L Sbjct: 5 KKVYFKTFGCRTNLFDTQVMKSNL--GQFECVECESEADIVIVNSCTVTNGADAGVRGYL 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY---RLPELLE 141 ++R+L V GC G+E+ +N+ G + + ELL+ Sbjct: 63 HKMRDLNKK---------VYFTGCGVGTRGQEVFS----LNLAYGVFAHSFKENIDELLQ 109 Query: 142 -RARFGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 + RF + ED E + +IV + R AFL IQEGCD C++C++P Sbjct: 110 NKERF--------FHKEDSPEHIDSTIVSEFVGKSR---AFLKIQEGCDFACSYCIIPSV 158 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 RG S +++ + L ++G+ E+ L G NV ++ G+ LD +Y+L ++ Sbjct: 159 RGKARSYPKDKILKQILTLAESGISEVVLTGTNVGSY-GRDLDSNLAGLIREIYNLGVLR 217 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 RLR + P + D K +L ++ +LH+ +Q SD +L+ MNR + ++ Sbjct: 218 ---RLRIGSLEPSQI-DSEFKEVLELPIMEKHLHIALQHTSDTMLEIMNRHNRVESDLEL 273 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + + + SDFIVG PGE++ + + F YS R GTP S M Sbjct: 274 FNYF--AQKGFCLGSDFIVGHPGESESVWEKALANFKLFPLTHLHPFVYSKRDGTPSSTM 331 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDA 408 + +V +RL L+ + + V+F A Sbjct: 332 KNDIKGDVSKQRLHTLKDIVAQNNVAFRKA 361 >gi|317008935|gb|ADU79515.1| putative MiaB-like tRNA modifying enzyme [Helicobacter pylori India7] Length = 418 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 106/387 (27%), Positives = 185/387 (47%), Gaps = 38/387 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L D V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARL---------DKEVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258 S +++++ L GV E+ L G NV ++ RG + + L+ LS+I Sbjct: 160 ARSFEERKILEQVDLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++ Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++ I S + AI +DFIVG PGE+ F ++ + F YS R TP S M Sbjct: 272 LEVIAS--KNFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSF 405 + V +RL ++ + + +F Sbjct: 330 CDSVSLEDSKKRLNAIKDLISHKNKAF 356 >gi|237716499|ref|ZP_04546980.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408097|ref|ZP_06084645.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22] gi|294645091|ref|ZP_06722817.1| MiaB-like protein [Bacteroides ovatus SD CC 2a] gi|294809491|ref|ZP_06768194.1| MiaB-like protein [Bacteroides xylanisolvens SD CC 1b] gi|229444146|gb|EEO49937.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262354905|gb|EEZ03997.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacteroides sp. 2_1_22] gi|292639597|gb|EFF57889.1| MiaB-like protein [Bacteroides ovatus SD CC 2a] gi|294443309|gb|EFG12073.1| MiaB-like protein [Bacteroides xylanisolvens SD CC 1b] Length = 436 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 116/456 (25%), Positives = 215/456 (47%), Gaps = 39/456 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYS 82 +R + + GC N+ DS ++ GY + ++ ++ V+NTC A E+ + Sbjct: 4 KRIDIITLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESIN 63 Query: 83 FLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L+ + KE GDL + V GC+++ +E+ P V+ G + ELL+ Sbjct: 64 MI-----LEFAERKEEGDLKKLFVMGCLSERYLKELAVEIPQVDKFYGK---FNWKELLQ 115 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 GK D Y ER Y A+L I EGCD+ C++C +P G Sbjct: 116 D--LGKVYHDELY-----IERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGR 161 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGL 260 IS+ + +++DE R L+ GV E ++ Q + + G+D +K +L+ +S+I G+ Sbjct: 162 HISKPMEEILDEVRYLVSQGVKEFQVIAQELTYY---GIDRYKKQMLPELIERISDIPGV 218 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++P L + + D + Y+ + +Q SD +L+ M R+ + + ++I+ Sbjct: 219 EWIRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLQLMRRQVSKKDTYRLIE 278 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + R P I + + +VG PGET++DF + V K+ + + +F YS GT + E Sbjct: 279 QFRKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAESYE 338 Query: 381 -QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435 + + VK RL L + + +G+ ++++I++ E +GR SP + Sbjct: 339 DSIPQEVKQARLDELMDIQQGISAELSAEKIGKQMKIIIDR--LEGDYYIGRTEFDSPEV 396 Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468 VL + + IG +V +T+ LY +++ Sbjct: 397 DPEVLVKRSERELKIGQFYQVEVTNADDFDLYAKII 432 >gi|57241884|ref|ZP_00369824.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter upsaliensis RM3195] gi|57017076|gb|EAL53857.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter upsaliensis RM3195] Length = 436 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 101/370 (27%), Positives = 182/370 (49%), Gaps = 21/370 (5%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 ++ S GC N+ DS M + Y + AD++++NTC E A ++ + Sbjct: 4 LYLHSLGCNKNLVDSEIMLGRL--ENYTLCDEPKRADVLIVNTCGFIESAKKES---IEA 58 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 I NL R KE L+VV GC+ Q EE++R P V++ G + ++ L+ + + Sbjct: 59 ILNLHKER-KENS--LLVVTGCLMQRYKEELMRALPEVDLFTGVGDFEKIDTLILKKQ-- 113 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 ++ Y E+ +R ++ G + AF+ I EGC++ C FC +P+ +G SR Sbjct: 114 NLFSNSTYLQEEGVKR--VITGSNSH-----AFIKISEGCNQSCAFCAIPHFKGRLKSRE 166 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 +S ++ E LI G + + + Q+ +++ G+K L+ + ++KG+ R Sbjct: 167 ISSIIKELESLISRGYKDFSFIAQDSSSYLFD--KGQKAGLLRLIEEVEKLKGIRVARIL 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P +S+ +++ V + Y +P+Q SD++LK M R + +++ +R + Sbjct: 225 YLYPSTLSEEVVRKIIASKVFVNYFDMPLQHISDKMLKVMKRGSKKEQILKLLKMMRGAK 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 D + + FIVG PGE+++DFR + V+ + + F YS T M EQV + V Sbjct: 285 -DSFLRTGFIVGHPGESEEDFRELCEFVEGFDFDRISVFGYSKEEDTLAFEM-EQVPKKV 342 Query: 387 KAERLLCLQK 396 RL L+K Sbjct: 343 INARLKILEK 352 >gi|237720682|ref|ZP_04551163.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449517|gb|EEO55308.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 436 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 115/450 (25%), Positives = 212/450 (47%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ GY + ++ ++ V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ + KE GDL + V GC+++ +E+ P V+ G + ELL+ GK Sbjct: 66 -LEFAERKEEGDLKKLFVMGCLSERYLKELAVEIPQVDKFYGK---FNWKELLQD--LGK 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 D Y ER Y A+L I EGCD+ C++C +P G IS+ + Sbjct: 120 VYHDELY-----IERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGHHISKPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE R L+ GV E ++ Q + + G+D +K +L+ +S+I G+ +R Sbjct: 168 EEILDEVRYLVSQGVKEFQVIAQELTYY---GIDRYKKQMLPELIERISDIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + D + Y+ + +Q SD +L+ M R+ + + ++I++ R Sbjct: 225 YAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLQLMRRQVSKEDTYRLIEQFRKEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385 P I + + +VG PGET++DF + V K+ + + +F YS GT + E + + Sbjct: 285 PGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAKAYEDSIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440 VK RL L + + +G+ ++++I++ E +GR SP + VL Sbjct: 345 VKQARLDELMDIQQGISAELSAEKIGKQMKIIIDR--LEGDYYIGRTEFDSPEVDPEVLV 402 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468 + + IG +V +T+ LY +++ Sbjct: 403 KRSERELKIGQFYQVEVTNADDFDLYAKII 432 >gi|206895616|ref|YP_002247217.1| Fe-S oxidoreductase [Coprothermobacter proteolyticus DSM 5265] gi|206738233|gb|ACI17311.1| Fe-S oxidoreductase [Coprothermobacter proteolyticus DSM 5265] Length = 388 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 102/360 (28%), Positives = 178/360 (49%), Gaps = 54/360 (15%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F V +GC++N YD+ R G V +DAD+IVL +C + KA +V F+ Sbjct: 2 KFAVHFFGCKVNQYDAARWT---IGLGKNYVAQPNDADIIVLFSCVVTHKAEAEVRRFVQ 58 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + + A+G++I ++ G T L +L + + Sbjct: 59 KWK-----------------------AQGKKI--------ILTGCGTNITLTDLADESVT 87 Query: 146 GKRVVDTDYSVED--KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 RV D ++ F ++ +R RG F+ ++EGC+ CT+CV RG Sbjct: 88 LVRVDQLDSFMQQLGSFSAPKVIPFYPDRSRG---FVKVEEGCNWRCTYCVSSLERGEVR 144 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL--V 261 SR L +++ E R + + G+ E+ L G N+ WR +GEK + DL+ +S++ + Sbjct: 145 SRPLGEILQEIRLMSERGISEVVLTGTNLMLWR----EGEK-NYLDLIECVSKVAAEYNM 199 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMP---YLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 R+R ++ +P ++ +I +L + P +LH+ +QS SD++LKSMNR + Q+ Sbjct: 200 RVRLSSVYPEMINARMI----ELFCVYPLARHLHISLQSASDKVLKSMNRAPLG-DLTQM 254 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + ++R++ A ++D IVG+P ET D TM + + +++ F +S R GTP S M Sbjct: 255 LLQLRNLDSGFAFTADIIVGYPTETVQDSLMTMSFLSDLRFSKVHVFPFSVRPGTPASQM 314 >gi|149490145|ref|XP_001514441.1| PREDICTED: similar to CDK5 regulatory subunit associated protein 1-like 1, partial [Ornithorhynchus anatinus] Length = 419 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 106/389 (27%), Positives = 185/389 (47%), Gaps = 46/389 (11%) Query: 100 DLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSV-- 156 D VV+AGCV QA+ ++ ++ I+ V + ++R +SV Sbjct: 6 DKKVVLAGCVPQAQPRQDYMKGLSIIGV-----------QQIDRVVEVVEETVKGHSVRL 54 Query: 157 ----EDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +D +R+ + +D RK + ++I GC CT+C + RG S + ++ Sbjct: 55 LGQKKDNGKRMGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDEL 114 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI--------KGLV 261 V+ A++ GVCEI L ++ A+ R G D LL+ L E+ G+ Sbjct: 115 VERAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEGAMLRLGMT 169 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 Y H M+ L + +LH+PVQS SD +L M R + ++++++D Sbjct: 170 NPPYILEHLEAMAKILSHPR-----VYAFLHIPVQSASDSVLMGMKREYCVADFKRVVDF 224 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 ++ P I I++D I GFPGETD+DF+ T+ LV+ + F ++ PR GTP + M +Q Sbjct: 225 LKEKVPGITIATDIICGFPGETDEDFQDTVKLVEDYRFPSLFINQFYPRPGTPAAKM-QQ 283 Query: 382 VDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 V VK +R K+L + S+N D +G+ +VL+ + + V + + + V+ Sbjct: 284 VPAQVKKQRT----KELSQLFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVL 339 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + +G +++V I + L G+ V Sbjct: 340 VPKNPQFMGKMVEVDIYESGKHFLKGQPV 368 >gi|154173652|ref|YP_001408590.1| 2-methylthioadenine synthetase [Campylobacter curvus 525.92] gi|112803882|gb|EAU01226.1| 2-methylthioadenine synthetase [Campylobacter curvus 525.92] Length = 444 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 111/401 (27%), Positives = 189/401 (47%), Gaps = 24/401 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M YE N +AD+I++NTC A E+ + + + Sbjct: 17 SLGCNKNLVDSEIMLGRL--SNYELTNETREADVIIVNTCGFIASAKEESVRVILEMADA 74 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K K+G L VV GC+ Q EE++R P V++ G Y ++ E+L + + Sbjct: 75 K----KQGATL--VVTGCLMQRYREELMRELPEVDLFTGVGDYDKIDEILLKKQNLFSPG 128 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 S ED+ I Y+ A++ I EGC++ C+FC +P +G SRSL + Sbjct: 129 TYLQSSEDRV----ITGSNYH------AYIKISEGCNQRCSFCAIPNFKGRLKSRSLENI 178 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 V+E + L+ G + + L Q+ +++ R +G+ K +L+ + +I G+ R + Sbjct: 179 VNEVKNLVKKGFYDFSFLSQDSSSYMRDQGV---KDGLIELIDVVEKIDGVKSARILYLY 235 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P SD LI+ V Y +P+Q S+++L+ M R Q++ +R+ P Sbjct: 236 PSTASDALIERIIASPVFHNYFDMPIQHISEKMLRLMKRGSGKDRIMQLLKMMRAA-PGS 294 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 + + IVG P E+DDDF L D+I + + +F YS T +M QV ++ Sbjct: 295 FLRTGVIVGHPLESDDDFNELCALFDEIKFDRVSAFAYSREEDTAAFDM-AQVPTKTISK 353 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 RL ++K ++ + + A +G+ + +E E G Sbjct: 354 RLSMIEKIIKNEIDASFKAQLGKRVVASLEGQSSEGEMFFG 394 >gi|218262359|ref|ZP_03476856.1| hypothetical protein PRABACTJOHN_02530 [Parabacteroides johnsonii DSM 18315] gi|218223425|gb|EEC96075.1| hypothetical protein PRABACTJOHN_02530 [Parabacteroides johnsonii DSM 18315] Length = 200 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/201 (40%), Positives = 116/201 (57%), Gaps = 8/201 (3%) Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 MSD + + D + +HLP QSGS RILK MNR++T Y I IR + PD AIS Sbjct: 1 MSDETLHVIAEHDNICKMIHLPAQSGSSRILKVMNRKYTREWYLDRIAAIRRILPDCAIS 60 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERL 391 +D GF ET++D+ T+ L+ ++GY AF FKYS R GT + L + V E K RL Sbjct: 61 TDLFCGFHSETEEDYEETLSLMREVGYDSAFLFKYSERPGTYAAQHLPDTVSEEEKVRRL 120 Query: 392 ---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSVVLNSKNHNI 447 + LQ +L E+ N +G++ EVLIE K + +L GR+ + V+ + KN+++ Sbjct: 121 QGMIDLQNRLSEES---NKRDIGKVFEVLIEGFSKRSREQLFGRTSQNKVVIFDKKNYHV 177 Query: 448 GDIIKVRITDVKISTLYGELV 468 G IKVRI +TL+G+ V Sbjct: 178 GQFIKVRIHRASSATLFGDPV 198 >gi|297706883|ref|XP_002830254.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like, partial [Pongo abelii] Length = 229 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 24/224 (10%) Query: 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 REKA + +++ L +++ LK R + L + + GC+A+ EEIL R +V+++ GP Sbjct: 8 REKAEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDA 67 Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 Y LP LL A G++ + S+++ + + V + +AF++I GCD C++ Sbjct: 68 YRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQTSAS---ATSAFVSIMRGCDNMCSY 124 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR---------------G 237 C+VP+TRG E SR ++ +++E +KL + G+ E+TLLGQNVN++R Sbjct: 125 CIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAVPTNLS 184 Query: 238 KGLDGEKCT------FSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275 +G T F+ LL +S + +R+R+T+ HP+D D Sbjct: 185 RGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPD 228 >gi|218261905|ref|ZP_03476578.1| hypothetical protein PRABACTJOHN_02249 [Parabacteroides johnsonii DSM 18315] gi|218223699|gb|EEC96349.1| hypothetical protein PRABACTJOHN_02249 [Parabacteroides johnsonii DSM 18315] Length = 431 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 120/448 (26%), Positives = 211/448 (47%), Gaps = 36/448 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ F + GY E + +++V+NTC A E+ + I Sbjct: 10 TLGCSKNLVDSEQLMRQFVANGYTVEHDPHKINGEIVVVNTCGFIGDAQEES---INMIL 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +L ++ K+G + V GC+++ +++ P V+ G + ELL GK Sbjct: 67 DLGEAK-KKGKIGKLFVMGCLSERFLKDLENELPEVDRFYGK---FNWKELLND--LGK- 119 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 Y E +R+ Y A+L I EGCD+ C++C +P + G S + Sbjct: 120 ----SYHRELAADRVLTTPRHY-------AYLKIAEGCDRTCSYCAIPISTGRYQSIPME 168 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++ E R L+ GV E ++ Q++ + GLD ++ +L+ +S+I G+ +R Sbjct: 169 EIEKEVRLLVKQGVKEFQVIAQDLTYY---GLDLYKRHALPELVERISDIPGVEWIRLHY 225 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P L++ + D + Y+ + +Q SD +LK M R T E +I R+R P Sbjct: 226 GYPSHFPYDLLRVMRERDNVCKYMDIALQHISDPMLKKMRRNITKEETYALIRRMREEVP 285 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDENV 386 I + + +VG PGET+ DF ++ V + + + +F YS GT + + +D +V Sbjct: 286 GIHLRTTLMVGHPGETEQDFEELVEFVKEARFERMGAFAYSHEEGTYSFKHYTDDIDPDV 345 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNS 442 K +RL L + N + +G+ +V+I++ +E VGR SP + +L S Sbjct: 346 KQDRLDYLMRIQEGISAEVNGSKIGKEFKVMIDR--EEDDFYVGRTEFDSPEVDPEILVS 403 Query: 443 KNHNI--GDIIKVRITDVKISTLYGELV 468 K + G VRI D + LYG ++ Sbjct: 404 KEKPLIPGTFYNVRIDDAQAFDLYGSVL 431 >gi|318081364|ref|ZP_07988696.1| hypothetical protein SSA3_32842 [Streptomyces sp. SA3_actF] Length = 301 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 127/254 (50%), Gaps = 12/254 (4%) Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244 GCD+ C+FC +P RG ISR S V+ E R L + GV E+ L+ +N N GK L G+ Sbjct: 3 GCDRRCSFCAIPSFRGSFISRRPSDVLTETRWLAEQGVREVMLVSEN-NTSYGKDL-GDI 60 Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 LL L+ + G+ R+R + P +M LI + PY L Q + +L+ Sbjct: 61 RLLETLLPELAAVDGIERVRVSYLQPAEMRPGLIDVLTSTPKIAPYFDLSFQHSAAGVLR 120 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-----TMDLVDKIGY 359 +M R + ++D+IR+ P+ + S+FIVGFPGET++D T +D IG Sbjct: 121 AMRRFGGTDSFLGLLDQIRAKAPEAGVRSNFIVGFPGETEEDVAELERFLTSARLDAIGV 180 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 F YS GT + ++DE V AERL + + E + +G+ +EVL+E Sbjct: 181 -----FGYSDEEGTEAATYATKLDEEVVAERLARVSRLAEELTAQRAEERIGETMEVLVE 235 Query: 420 KHGKEKGKLVGRSP 433 E +GR P Sbjct: 236 SAATEDEPALGRGP 249 >gi|297620170|ref|YP_003708275.1| MiaB-like tRNA modifying protein [Methanococcus voltae A3] gi|297379147|gb|ADI37302.1| MiaB-like tRNA modifying enzyme [Methanococcus voltae A3] Length = 496 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 122/493 (24%), Positives = 222/493 (45%), Gaps = 69/493 (13%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE----RVNSMDDAD--LIVLNTCHIREKA 76 + Q+ ++ YGC +N D+ +++ +G+ N + D + L+V+NTC +R++ Sbjct: 23 IIQKVHLEGYGCTLNTSDTEIIKNSLIEKGFNVFTGNFNDLKDENINLVVINTCIVRQET 82 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRL 136 K+ S +I+ K S K V+VAGC+A+A +++ + + ++ P+ + Sbjct: 83 EHKMIS---KIKKYKESNKK------VIVAGCLAKALSKKV---EGLYDALIMPREAHLS 130 Query: 137 PELLERARFGKRVVDTDYSVEDKFER------LSIVDGGYN------------------- 171 E+++ G + + + + D F++ +S +D N Sbjct: 131 GEIVKAVVEGYKPEEINNKI-DLFKKEVENSEISKIDNKLNYLLKNNCTENNNNNNNKIV 189 Query: 172 ----RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227 + L I EGC CT+C+V RG IS ++ ++ +LI +G + + Sbjct: 190 NNTNNNTNLVMALPICEGCLGNCTYCIVKVARGNLISYEPKNIIKKSEELIKSGTKCLLI 249 Query: 228 LGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIK-----------GLVRLRYTTSHPRDMSD 275 Q+ + G D +K +L+ + + G++ Y S D Sbjct: 250 TAQDTACY---GFDRRDKYRLPNLINDIVDNPNSKPFDFGIRIGMMHANYANS----FID 302 Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335 LI+++ V+ +LHLP+QSG D +LK MNR +T E+ ++ + D+ ++D Sbjct: 303 ELIESYSSEKVI-KFLHLPIQSGDDNVLKDMNRGYTVDEFISVLGEFKRKVKDLNFTTDV 361 Query: 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ 395 IVGFP E+++ F T++++ KI KYS R T M +Q+D ++ ER L Sbjct: 362 IVGFPTESEEAFENTLEVMKKIKPDFTHGAKYSQRKYTLAGRM-KQIDTKIRKERSEILN 420 Query: 396 KKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455 K RE N VGQ E LI K G+ + + + N N +G+ ++I Sbjct: 421 KLRREISFENNKRHVGQTFECLITKKGEAITSNCKKVLFNRFDEFNEFNAPVGEFKTLKI 480 Query: 456 TDVKISTLYGELV 468 T+ L G L+ Sbjct: 481 TEAGTFGLKGRLI 493 >gi|78355553|ref|YP_387002.1| hypothetical protein Dde_0506 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123727796|sp|Q315T9|RIMO_DESDG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|78217958|gb|ABB37307.1| SSU ribosomal protein S12P methylthiotransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 430 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 121/428 (28%), Positives = 190/428 (44%), Gaps = 32/428 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYE--RVNSMDDADLIVLNTC-HIREKAAEKVYSFLGRI 87 S GC N D+ E + G E V M DADL+++NTC I E V + + + Sbjct: 8 SLGCPKNRVDT---EWLLGVLGPEVRPVREMADADLVLINTCGFIAPAVEESVRTVVEAV 64 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEG-EEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 L++ + L+ VAGC+ G +++ P V++ + + PE++ RA Sbjct: 65 AELEDLPRRP----LLAVAGCLVGRYGRQDLAAELPEVDLWLTNRDMDAWPEMIGRA--- 117 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +V RL Y A+L + +GC C+FC +P RG +S Sbjct: 118 -----LGVAVHVPPVRLLSTGPSY-------AYLKVSDGCGHNCSFCTIPSIRGGLVSTP 165 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + EA L+ GV E+ + Q+V A+ G+ + G + LL L + GL RLR Sbjct: 166 ADVLEAEAVNLLSRGVKELIFVAQDVAAY-GRDM-GLRHGLRSLLDRLLPLDGLERLRLM 223 Query: 267 TSHPRDMSDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + L++ D +PY +PVQ +L M R A R+++DR+R V Sbjct: 224 YLYPAGLDAGLLRYLRDAGKPFVPYFDIPVQHAHPDVLSRMGRPF-ARNPREVVDRVRDV 282 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 P+ A+ + IVGFPGET + V + + F Y GTP + M QVDE Sbjct: 283 FPEAALRTSIIVGFPGETQQHYDHLTRFVQDVRFMHLGVFAYRAEEGTPAAGMPGQVDEV 342 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVLNSKN 444 K R L + E + G +VL++ H + G VGR+ W Q+ ++ Sbjct: 343 EKDWRRDALMEVQAEISEEILEGFTGSDEDVLVDAAHEEWPGLHVGRT-WFQAPEIDGVT 401 Query: 445 HNIGDIIK 452 + G +K Sbjct: 402 YISGPGVK 409 >gi|327398341|ref|YP_004339210.1| MiaB-like tRNA modifying enzyme [Hippea maritima DSM 10411] gi|327180970|gb|AEA33151.1| MiaB-like tRNA modifying enzyme [Hippea maritima DSM 10411] Length = 410 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 111/394 (28%), Positives = 188/394 (47%), Gaps = 41/394 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 +K+ GC++N Y++ M + +G+E V+ D A+ ++N+C + KA+++ R Sbjct: 5 IKTLGCKLNQYETQLMIEDLTKEGHEIVDFEDMANFYIINSCAVTAKASKES-------R 57 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L S K G VV GC + E E++ R ++ G +++ +L++ Sbjct: 58 LLAKSAAKRG---RVVYTGCDSYLE-EKLKDRF----ILAGNSYKHKIIKLIKNP----- 104 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 D S E K L + Y K AF+ IQEGC+ CT+C++ + RG E + Sbjct: 105 --INDISDETKTYPLERILSQYRGKS--RAFVKIQEGCNNHCTYCIISFLRGRERDKEKD 160 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +V+ E L G EI L G N+ ++R LL + ++G R+R ++ Sbjct: 161 KVLSEIESLAKAGFSEIVLTGTNIGSYR---------DLKGLLRDIDALEGDFRVRISSI 211 Query: 269 HPR--DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 P D I A G +LH+P+QSGS++ILK M R + Y +I++ + Sbjct: 212 EPMYVDKEFIDIVASGR---FANHLHIPLQSGSNKILKLMGRNYKREHYEKIVNYCH--K 266 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-LEQVDEN 385 + + D IVGF GETD+ F T V ++ + A F YS R TP N+ L+ Sbjct: 267 KGVFVGCDIIVGFFGETDELFEETYWFVKRLPLSYAHVFSYSKRPNTPAYNLKLDLPKGP 326 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 V +R L++ +++ + +G+ +E +IE Sbjct: 327 VVRQRNRKLRELFEQKKKNSIKQMIGKEVEFIIE 360 >gi|152965452|ref|YP_001361236.1| MiaB-like tRNA modifying enzyme YliG [Kineococcus radiotolerans SRS30216] gi|238066341|sp|A6W833|RIMO_KINRD RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|151359969|gb|ABS02972.1| MiaB-like tRNA modifying enzyme YliG [Kineococcus radiotolerans SRS30216] Length = 486 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 126/476 (26%), Positives = 215/476 (45%), Gaps = 45/476 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N DS + G+ V+ D AD+ V+NTC E+A + + L Sbjct: 15 TLGCARNDVDSEELAGRLADAGWTLVDDADGADVAVVNTCGFVEQAKKDSIDTV-----L 69 Query: 91 KNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + +KE G VVA GC+A+ G+++ P + ++G +Y L LE G++ Sbjct: 70 AAADLKEAGRTKAVVAVGCMAERYGKDLAESLPEADAILGFDSYGDLSSHLEAILHGEKP 129 Query: 150 ---VDTD------------------YSVEDKFERLSIVDGGYNRKR----GVTAFLTIQE 184 V D + D E L+ G +R G A + I Sbjct: 130 QSHVPRDRRTLLPLAPAERQAARPVIAEPDLPEGLAPASGPRVVRRRLGSGPWAPVKIAA 189 Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244 GCD+ CTFC +P RG +SR +V+ E R L + GV E+ L+ +N ++ GK L G+ Sbjct: 190 GCDRRCTFCAIPAFRGSFVSRPAEEVLAETRWLAEQGVKEVFLVSENTTSY-GKDL-GDL 247 Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 LL ++ ++G+ R+R + P ++ L+ A ++PY L Q S +L+ Sbjct: 248 RALEALLPHVAAVEGIERVRVSYLQPAEVRPGLLDALTSTPGVVPYFDLSFQHSSPAVLR 307 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 M R + +++++R P I S+ IVGFPGET+ D +++ Sbjct: 308 RMRRFGGTEPFLALLEQVRERHPQAGIRSNVIVGFPGETEADVDELCSFLERARLDVVGV 367 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 F YS GT + ++ + V A R+ + + + E + +G+++EVL+E E Sbjct: 368 FGYSDEDGTEAETLDGKLPDEVVAARVDRVTRLVEELVTQRAEERLGEVVEVLVESVVDE 427 Query: 425 KG--KLVGRSPWLQSVVLNSKNH---------NIGDIIKVRITDVKISTLYGELVV 469 G +VGR+ Q ++ + ++GD++ R+T V + L E +V Sbjct: 428 DGDPHVVGRAAH-QGPDVDGETELDLPAGFVVHVGDLVTARVTGVAGADLLAEPLV 482 >gi|15611340|ref|NP_222991.1| hypothetical protein jhp0270 [Helicobacter pylori J99] gi|11387381|sp|Q9ZMF0|Y285_HELPJ RecName: Full=Putative methylthiotransferase jhp_0270 gi|4154794|gb|AAD05851.1| putative [Helicobacter pylori J99] Length = 418 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 108/395 (27%), Positives = 188/395 (47%), Gaps = 45/395 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGTDSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L D V+ GC + +G+E+ + ++ V G ++ LL E Sbjct: 58 YARKMARL---------DKEVLFTGCGVKTQGKELFEKG-LLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258 S +++++ L GV E+ L G NV ++ RG + + L+ LS+I Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIT 212 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++ Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++ I S + AI +DFIVG PGE++ F ++ + F YS R TP S M Sbjct: 272 LEIIAS--KNFAIGTDFIVGHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329 Query: 379 LEQVDENVKAERLLCLQ-------KKLREQQVSFN 406 + V +RL ++ K R+ Q+ N Sbjct: 330 RDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLN 364 >gi|149196637|ref|ZP_01873691.1| hypothetical protein LNTAR_09104 [Lentisphaera araneosa HTCC2155] gi|149140317|gb|EDM28716.1| hypothetical protein LNTAR_09104 [Lentisphaera araneosa HTCC2155] Length = 469 Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 108/412 (26%), Positives = 192/412 (46%), Gaps = 45/412 (10%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V S GC N+ D+ M G ++DAD+ V+NTC SF+ R Sbjct: 9 VSSLGCAKNLVDTEVMLGSMAKSGVVITGDLNDADIFVVNTC-----------SFIEGAR 57 Query: 89 NLKNSRIKEG-------GDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL-- 139 N+ I + VVVAGC+ Q EE + P V++ +G + + Sbjct: 58 QESNAAIMDAITWKKKRKSRKVVVAGCLPQRSPEETKKNHPDVDLFLGLDDVASIGTMVN 117 Query: 140 -LERARFGKRVVDTD----YSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 L R + D Y ++ RL + Y A++ I EGC+ C+FC Sbjct: 118 NLLRKMPTMNTIQKDDLPVYLYDENTPRLLVTPSHY-------AYIKISEGCNHKCSFCA 170 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 +P RG SR++ +V EA+ L++ GV EI L+ Q+ + DG + ++LL +L Sbjct: 171 IPTFRGKLRSRTIESIVKEAQALLNRGVREIILVSQDSTGYGSDLKDG--SSTAELLKAL 228 Query: 255 SEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 ++ + VRL Y +P ++D LI+ + Y+ +P+Q G+D++LK+M R T Sbjct: 229 DKLDCDEYWVRLLYL--YPTTVTDELIETFAQSKHIAKYIDMPLQHGADKVLKTMRRGIT 286 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 ++D+ R P + + + +VG PGE +++F+ +D V + + + F YS Sbjct: 287 RKRTEILLDKFRKAMPGVVMRTTLLVGHPGEGEEEFQECLDFVKEQQFDRLGVFTYSHEE 346 Query: 372 GTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 T ++ + D A R ++ +Q+++ ++ N GQ + V++++ Sbjct: 347 NTHARSLEDFTDPETSAARRDQIMAVQQEISYEK---NQRFAGQDLRVIVDE 395 >gi|71996771|ref|NP_740783.2| hypothetical protein Y92H12BL.1 [Caenorhabditis elegans] gi|75017352|sp|Q8MXQ7|CDKAL_CAEEL RecName: Full=CDKAL1-like protein gi|39752835|gb|AAM81103.2|AC084268_1 Hypothetical protein Y92H12BL.1 [Caenorhabditis elegans] Length = 425 Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 104/365 (28%), Positives = 179/365 (49%), Gaps = 32/365 (8%) Query: 105 VAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERL 163 +AGCV+QA E + NV +VG + R+ E++ G +V + D Sbjct: 1 MAGCVSQAAPSEPW----LQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPD----- 51 Query: 164 SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI-DNGV 222 +++ RK + L+I GC CT+C RG +S L+ +V++AR D GV Sbjct: 52 AVLSLPKMRKNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHDEGV 111 Query: 223 CEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDM 273 E+ L +++ AW R GL DLL L ++ G+ Y H ++ Sbjct: 112 KELWLTSEDLGAWGRDIGL-----VLPDLLRELVKVIPDGSMMRLGMTNPPYILDHLEEI 166 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 ++ L + + +LH+PVQS SD +L M R ++ + QI D + + P+I I++ Sbjct: 167 AEIL-----NHPKVYAFLHIPVQSASDAVLNDMKREYSRRHFEQIADYMIANVPNIYIAT 221 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 D I+ FP ET +DF +M+LV K + F +Y PR GTP + L+++D V+A + Sbjct: 222 DMILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSGTPAAR-LKKID-TVEARKRTA 279 Query: 394 LQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKV 453 +L + D +G++ VL+ + +K VG + + +++ + +G+ I+V Sbjct: 280 AMSELFRSYTRYTDERIGELHRVLVTEVAADKLHGVGHNKSYEQILVPLEYCKMGEWIEV 339 Query: 454 RITDV 458 R+T V Sbjct: 340 RVTAV 344 >gi|298484173|ref|ZP_07002339.1| 2-methylthioadenine synthetase [Bacteroides sp. D22] gi|298269677|gb|EFI11272.1| 2-methylthioadenine synthetase [Bacteroides sp. D22] Length = 436 Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 115/456 (25%), Positives = 215/456 (47%), Gaps = 39/456 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYS 82 +R + + GC N+ DS ++ GY + ++ ++ V+NTC A E+ + Sbjct: 4 KRIDIITLGCSKNLVDSEQLMRQLEEVGYSVTHDTENPQGEIAVINTCGFIGDAKEESIN 63 Query: 83 FLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L+ + KE GDL + V GC+++ +E+ P V+ G + ELL+ Sbjct: 64 MI-----LEFAERKEEGDLKKLFVMGCLSERYLKELAVEIPQVDKFYGK---FNWKELLQ 115 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 GK D Y ER Y A+L I EGCD+ C++C +P G Sbjct: 116 D--LGKGYHDELY-----IERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGR 161 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKGL 260 IS+ + +++DE R L+ GV E ++ Q + + G+D +K +L+ +S+I G+ Sbjct: 162 HISKPMEEILDEVRYLVSQGVKEFQVIAQELTYY---GIDRYKKQMLPELIERISDIPGV 218 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 +R ++P L + + D + Y+ + +Q SD +L+ M R+ + + ++I+ Sbjct: 219 EWIRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLQLMRRQVSKEDTYRLIE 278 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML- 379 + R P I + + +VG PGET++DF + V K+ + + +F YS GT + Sbjct: 279 QFRKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRKVRFDRMGAFAYSEEEGTYAAETYK 338 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWL 435 + + + VK RL L + + +G+ ++++I++ E +GR SP + Sbjct: 339 DSIPQEVKQARLDELMDIQQGISAELSAEKIGKQMKIIIDR--LEGDYYIGRTEFDSPEV 396 Query: 436 QSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468 VL + + IG +V +T+ LY +++ Sbjct: 397 DPEVLVKRSERELKIGQFYQVEVTNADDFDLYAKII 432 >gi|163744051|ref|ZP_02151418.1| RNA modification enzyme, MiaB-family protein [Phaeobacter gallaeciensis 2.10] gi|161382667|gb|EDQ07069.1| RNA modification enzyme, MiaB-family protein [Phaeobacter gallaeciensis 2.10] Length = 475 Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 118/410 (28%), Positives = 183/410 (44%), Gaps = 51/410 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY AD +++NTC + A + +G Sbjct: 38 SLGCPKALVDSERILTRLRAEGYGVSPDYSGADAVIVNTCGFLDSAKAESLEAIGEA--- 94 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +KE G V+V GC+ AE + I P + V GP Y ++V+ Sbjct: 95 ----LKENGK--VIVTGCLG-AEPDYIRAHHPRILAVTGPHQY-------------EQVL 134 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D ++ + + L G R + +L I EGC+ C FC++P RG SR Sbjct: 135 DAVHAAVPPSPNPYVDLLPAAGVKLTPRHFS-YLKISEGCNHKCKFCIIPDMRGKLASRP 193 Query: 207 LSQVVDEARKLIDNGVCEITLLGQN-----------VNAWRGKGLDGE-KCTFSDLLYSL 254 V+ EA KL+D GV E+ ++ Q+ VN W+ DGE + DL L Sbjct: 194 AHAVLREAEKLVDAGVRELLVISQDTSAYGLDRKYDVNPWK----DGEVRSHIQDLSREL 249 Query: 255 SEIKG----LVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRR 309 + VRL Y +P LI D D L+PYL +P Q +L+ M R Sbjct: 250 GRLAPADELWVRLHYVYPYPHVRE--LIPLMADPDNALLPYLDIPFQHAHPDVLRRMARP 307 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 A + I+ R+ PDI + S FIVG+PGET+ +F+ +D +D+ + FKY Sbjct: 308 AAAAKTLDEINAWRATCPDITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFKYEN 367 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 G +++ + V E VK +R +K + + A VGQ + V+++ Sbjct: 368 VDGARSNDLADHVPEEVKQDRWDRFMEKAQAISEAKLAAKVGQTMLVIVD 417 >gi|126725177|ref|ZP_01741020.1| RNA modification enzyme, MiaB-family protein [Rhodobacterales bacterium HTCC2150] gi|126706341|gb|EBA05431.1| RNA modification enzyme, MiaB-family protein [Rhodobacterales bacterium HTCC2150] Length = 461 Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 117/450 (26%), Positives = 200/450 (44%), Gaps = 36/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY A+ +++NTC + A + +G Sbjct: 33 SLGCPKALVDSERILTRLRAEGYAISPDYSGAEAVIVNTCGFLDSAKVESLEAIGEA--- 89 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ A+ E IL P V V GP Y ++ + + A Sbjct: 90 ----LQENG--RVIVTGCLG-ADSEYILGHHPTVLAVTGPHQYEQVLDAVHAAV------ 136 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L + G + ++L I EGC+ C FC++P RG SR + Sbjct: 137 ---PPAPDAFIDL-LPSSGVSLTPRHYSYLKISEGCNHKCKFCIIPDMRGRLSSRPAHAI 192 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-------FSDLLYSLSEIKGLVRL 263 V EA +L+D GV E+ ++ Q+ +A+ GLD T +DL L + VRL Sbjct: 193 VREAERLVDAGVKELLVISQDTSAY---GLDLRHATDRDHRAHITDLARDLGSLGAWVRL 249 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y +P + D + + ++PYL +P Q +L+ M R A + I R Sbjct: 250 HYVYPYPH-VRDLIPIMADPTNGVLPYLDIPFQHAHPDVLRRMARPAAAAKTLDEIAAWR 308 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 PDI + S FIVG+PGET+ +F+ +D +D+ + F+Y G + + + V Sbjct: 309 KDCPDITLRSTFIVGYPGETEAEFQTLLDWLDEAQLDRVGCFQYENVEGARSNALPDHVA 368 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVLN 441 + +K +R +K + + VG+ IEV+++ + + + +P + + Sbjct: 369 DEIKQDRWNRFMEKSQAISEAKLATKVGRKIEVIVDSVEDDGATCRTMSDAPEIDGNLFI 428 Query: 442 SKNHN---IGDIIKVRITDVKISTLYGELV 468 + GD++ V + + L+G LV Sbjct: 429 DEGFEKLVAGDLLTVEVDEAGDYDLWGRLV 458 >gi|291280326|ref|YP_003497161.1| MiaB-like tRNA modifying enzyme YliG [Deferribacter desulfuricans SSM1] gi|290755028|dbj|BAI81405.1| MiaB-like tRNA modifying enzyme YliG [Deferribacter desulfuricans SSM1] Length = 449 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 177/376 (47%), Gaps = 21/376 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N D + + + N+ D+AD I++NTC E A + + L Sbjct: 9 SLGCPKNQVDLEVLLGKMTDEDFMLTNNPDEADAIIINTCGFIEPAVMEAVETI-----L 63 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + KE G ++V GC+ + E + P V+ G + + L+ K+ Sbjct: 64 EFESYKEKGKK-IIVTGCMVERYKNEFEKEFPFVDYYTGVGELKSVIDFLKNNSKPKQTE 122 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 Y ++ R+ + + A+L I +GC C++C +P RG + SR + + Sbjct: 123 KNLYFSKN---RVILNPQSF-------AYLKIADGCRNRCSYCTIPSIRGTQKSRKIEDI 172 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 ++EA++LID GV E+ L+ Q+ + G + G LL LS ++G +R +P Sbjct: 173 LEEAQRLIDGGVKELILISQDTTKY-GIDIYGS-FMIKPLLEKLSSLEGDFYIRTLYLNP 230 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 + LI + ++ Y +P+Q +DRILK MNR+ + ++I I+ D Sbjct: 231 DGVDGELIDIILNNPKIINYFEIPIQHINDRILKLMNRKFNSSHIKKIFTLIKEKSEDAF 290 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV---DENVK 387 I + FIVGFP ET+++F +D + + A F + P G S M Q+ ++N + Sbjct: 291 IRTTFIVGFPSETEEEFNEIIDFLHEFKPDFAGFFPFYPEDGVKASTMDGQISKREKNKR 350 Query: 388 AERLLCLQKKLREQQV 403 ++L +QKK+ +++ Sbjct: 351 VKQLEKIQKKITSERL 366 >gi|94263081|ref|ZP_01286900.1| MiaB-like tRNA modifying enzyme [delta proteobacterium MLMS-1] gi|93456624|gb|EAT06732.1| MiaB-like tRNA modifying enzyme [delta proteobacterium MLMS-1] Length = 470 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 106/396 (26%), Positives = 187/396 (47%), Gaps = 14/396 (3%) Query: 25 QRFFVKSYGCQMNVYDSLR-MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 +R V + GC++N Y+S + ++ +G E V AD+ V+NTC + +A + Sbjct: 10 KRVAVTTLGCKVNQYESAAFLSELAEREGVEIVPFEQAADVYVINTCAVTARAGAQSRQL 69 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + R + +R+ VV GC AQ +E+L +VG R+ ++ Sbjct: 70 IRRAARCRRARL--------VVTGCYAQVAPQEVLELVGNPLCIVGNAHKERVAQIAAAG 121 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R + + + +V R R V L +Q+GC + C++C+VP RG Sbjct: 122 RSCDLEMYHGEMGDCRQVAPLLVKAATARSRAV---LKVQDGCSQACSYCIVPRARGRSR 178 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S +V+ +A G E L G ++ + G+ L L L+ L R Sbjct: 179 SVLPERVLRQAEIFAAAGHREAVLTGIHLGHY-GRDLTPPGSLLGLLEQLLARDLPL-RY 236 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ ++ L+ L+P+LH+P+QSG DRIL++MNR + ++ +I+R Sbjct: 237 RLSSLEATEIGPDLLALLAAESRLLPHLHIPLQSGDDRILRAMNRPYDRAQFAAVIERCA 296 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P+ AI D + GFPGE + F+ T +L+ + + F YS R GTP + + +QV Sbjct: 297 AALPEAAIGIDVMTGFPGEDEPAFQHTYELLAALPISYLHVFPYSQRAGTPAARLPDQVP 356 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 V+ +R L++ ++++F +G+ VL+E Sbjct: 357 GPVRDQRAARLRELGESKKIAFYQRFLGRQRRVLVE 392 >gi|328773588|gb|EGF83625.1| hypothetical protein BATDEDRAFT_1672 [Batrachochytrium dendrobatidis JAM81] Length = 446 Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 119/471 (25%), Positives = 210/471 (44%), Gaps = 67/471 (14%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERV---NSMDDADLIVLNTCHIREKAAEKVYSFL 84 FVK++GC N D M + + GY + + ++A + VLN+C ++ + + +F+ Sbjct: 8 FVKTWGCGHNNSDGEYMAGLLAADGYNVILDHSKAEEAQVWVLNSCTVKGPSQQ---TFV 64 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYRLPELLER 142 I K + K +VVAGCV QA +E S V+G Q ++ ++E Sbjct: 65 NDIDKGKLAGKK------IVVAGCVPQASPSNDEWKGLS-----VIGVQQIDQVVRVVEE 113 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYN------RKRGVTAFLTIQEGCDKFCTFCVVP 196 G + + E + + GG R+ + I GC CT+C Sbjct: 114 TLKGNTIRLMKEAKEVSADGVKRKAGGARLDLPKVRRNPFIEIIPINTGCLNQCTYCKTK 173 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKG------LDG-----EK 244 + RG S SL++++ ++ GV EI L ++ A+ R G L+G +K Sbjct: 174 HARGDLGSYSLAEIIARVESVLHEGVKEIWLTSEDTGAYGRDIGVSIVDLLEGILVAMDK 233 Query: 245 CTFSDLL---------YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295 D + Y L +KG+ ++ +HP+ S +LH+PV Sbjct: 234 HIVQDAMLRVGMTNPPYILEHLKGIAKV---LNHPKVYS---------------FLHVPV 275 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355 Q+GS ++L M R + ++ +++D +R P + I++D I GFP ETD+DF TM L++ Sbjct: 276 QAGSTKVLDDMRRLYAVQDFERVVDVLREKVPCVTIATDIICGFPTETDEDFDETMHLLE 335 Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415 K ++ ++ PR GTP + M +++ N+ R + + + D+ VG I + Sbjct: 336 KYKFSVLHISQFYPRPGTPAARM-KRISTNIVKNR--SRRATTFFESYTTYDSLVGTIQK 392 Query: 416 VLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 +L+ + + VG + Q +++ +G VRI L GE Sbjct: 393 ILVTEQSADGNHYVGHNKPYQQILVPKNEKLMGQTFHVRIVRASKFYLMGE 443 >gi|154492267|ref|ZP_02031893.1| hypothetical protein PARMER_01901 [Parabacteroides merdae ATCC 43184] gi|154087492|gb|EDN86537.1| hypothetical protein PARMER_01901 [Parabacteroides merdae ATCC 43184] Length = 431 Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 119/448 (26%), Positives = 211/448 (47%), Gaps = 36/448 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ F + GY E + +++V+NTC A E+ + I Sbjct: 10 TLGCSKNLVDSEQLMRQFVANGYTVEHDPHKINGEIVVVNTCGFIGDAQEES---INMIL 66 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 +L ++ K+G + V GC+++ +++ P V+ G + ELL GK Sbjct: 67 DLGEAK-KKGKIGKLFVMGCLSERFLKDLENELPEVDRFYGK---FNWKELLND--LGK- 119 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 Y E +R+ Y A+L I EGCD+ C++C +P + G S + Sbjct: 120 ----SYHRELAADRVLTTPRHY-------AYLKIAEGCDRTCSYCAIPISTGRYQSIPME 168 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++ E R L+ GV E ++ Q++ + GLD ++ +L+ +S+I G+ +R Sbjct: 169 EIEKEVRLLVKQGVKEFQVIAQDLTYY---GLDLYKRHALPELVERISDIPGVEWIRLHY 225 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P L++ + D + Y+ + +Q SD +LK M R T E +I R+R P Sbjct: 226 GYPSHFPYDLLRVMSERDNVCKYMDIALQHISDPMLKKMRRNITKEETYALIRRMREEVP 285 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG-SNMLEQVDENV 386 I + + +VG PGET+ DF ++ V + + + +F YS GT + + +D V Sbjct: 286 GIHLRTTLMVGHPGETEQDFEELVEFVKEARFERMGAFAYSHEEGTYSFKHYTDDIDPEV 345 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVLNS 442 K +RL L + N + +G++ +V+I++ +E+ VGR SP + +L S Sbjct: 346 KQDRLDYLMRIQEGISAEVNGSKIGKVFKVMIDR--EEEDFYVGRTEFDSPEVDPEILVS 403 Query: 443 KNHNI--GDIIKVRITDVKISTLYGELV 468 K + G V I D + LYG ++ Sbjct: 404 KEKLLIPGMFYNVWIDDAQAFDLYGSVL 431 >gi|291295078|ref|YP_003506476.1| RNA modification enzyme, MiaB family [Meiothermus ruber DSM 1279] gi|290470037|gb|ADD27456.1| RNA modification enzyme, MiaB family [Meiothermus ruber DSM 1279] Length = 440 Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 120/445 (26%), Positives = 200/445 (44%), Gaps = 30/445 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R VK+ GC++N +S + + V ADL+V+NTC + A Sbjct: 8 RLAVKTLGCKVNQVESDALVGLLKPLQPVVVPLEAGADLVVINTCAVTTSAEADA----- 62 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R + +VV GC A+ +++ +VV+ LP ++ + RF Sbjct: 63 --RKEVRRARRANPAAFIVVTGCYAELAPDQLAELG--ADVVLPNSRKAELPGVILQ-RF 117 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 G + D E + G V AFL +Q+GC+ C +C++P RG E R Sbjct: 118 G---LPADPITTPPNEFWGAGERGLLNNY-VRAFLKVQDGCNAGCAYCIIPRLRGRERHR 173 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLVRL 263 + EA L++ GV EI L G + +++G +G+ G L+ L+ + VRL Sbjct: 174 GYRDALSEAGALLEAGVQEIVLTGVRLGSYKGHPRGIAG-------LVEELALMGAKVRL 226 Query: 264 RYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 ++ P D D L++ + P+LHL +Q+GS R+L M RR+ YR++ + Sbjct: 227 --SSIEPEDTGDELLRVMQRFAPQVRPHLHLSLQTGSGRLLALMGRRYDKNYYRELAQKA 284 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 P A+++D I G P ET+D+ + T+ ++++ ++ F Y+PR T ++ L QV Sbjct: 285 YDWIPGFALTTDVIAGLPTETEDEHQETLAFLEEVRPSRVHVFTYTPRPKTRAAS-LPQV 343 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 ++ R LQ + +G +EVL+E GK G +P V Sbjct: 344 PIEIRKRRNKELQALAARLAEARVRPKLGGAVEVLVESF--RGGKAYGHTPDYYEVEFTG 401 Query: 443 KNHNIGDIIKVRITDVKISTLYGEL 467 + IG VR+ ++ TL G L Sbjct: 402 QA-RIGQTAWVRVEAIEGYTLRGAL 425 >gi|67623743|ref|XP_668154.1| transmembrane protein [Cryptosporidium hominis TU502] gi|54659343|gb|EAL37924.1| transmembrane protein [Cryptosporidium hominis] Length = 543 Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 119/472 (25%), Positives = 221/472 (46%), Gaps = 40/472 (8%) Query: 2 GLFIKLIGVAHMVSQIVDQCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM 59 GL I+ + ++ S+ + VP + VK++GC N DS M + GY V + Sbjct: 80 GLIIRAVNNLNIQSE---EGFVPGIAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEEL 136 Query: 60 DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119 D+ +LIV+N+C ++ + + + + L S+ K VVV GCV QA+ + Sbjct: 137 DECNLIVINSCTVKGPSQDSCQNLI----ELAKSKRK-----FVVVTGCVPQAD----IN 183 Query: 120 RSPIVNV-VVGPQTYYRLPELLERARFGKRVVDTDYSVE-------DKFE-RLSIVDGGY 170 + + +V ++G + +R+ E++E G V+ +E D E L + Sbjct: 184 LNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLIPDKMEGKSGQLIDSLEMSLPPLSLPK 243 Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 R+ +TI GC CT+C +RG S + ++ + ++ GV + L + Sbjct: 244 IRRNPFVEIITISVGCLGNCTYCKTKQSRGDLGSYPIETIIQRINQSLNEGVKQFWLTSE 303 Query: 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPR---DMSDCLIKAHGDLDV 286 ++ A+ GK + S+LL + +I + +R ++P D D +I +V Sbjct: 304 DIGAY-GKDIG---TNLSELLREILKILPQDIMIRIGMTNPPYILDQIDEIIDIMKHPNV 359 Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 +LH+PVQSGS+RIL M R + E+ ++D I P I++D I GFPGE+D D Sbjct: 360 F-EFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSILKEIPLATIATDIICGFPGESDQD 418 Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQV 403 +++L++K + K+ PR GTP + M + V V ++ + + + + Sbjct: 419 HFQSVELINKYKFPVINISKFYPRPGTPAAKM-KPVPNGVSKGRSSEITNIFQSFNHNEY 477 Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455 F + ++++V +H + VG + V++N ++ +G V++ Sbjct: 478 IFENLPDDKVVKVWFIEHSERSNHTVGHTKNYNKVLVNMDSNLLGKCAMVKL 529 >gi|308063147|gb|ADO05034.1| hypothetical protein HPSAT_01425 [Helicobacter pylori Sat464] Length = 418 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 110/395 (27%), Positives = 187/395 (47%), Gaps = 45/395 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258 S +++++ L GV E+ L G NV ++ RG + + L+ LS+I Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIT 212 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++ Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDREL 271 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++ I S + AI +DFIVG PGE+ F ++ + F YS R TP S M Sbjct: 272 LEIIAS--KNFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329 Query: 379 -----LEQVDENVKAERLLCL--QKKLREQQVSFN 406 LE + + A + L L K R+ Q+ N Sbjct: 330 TDSVILEDSKKRLNAIKDLILYKNKAFRQLQLKLN 364 >gi|288800012|ref|ZP_06405471.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 299 str. F0039] gi|288333260|gb|EFC71739.1| 2-methylthioadenine synthetase [Prevotella sp. oral taxon 299 str. F0039] Length = 431 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 114/453 (25%), Positives = 208/453 (45%), Gaps = 46/453 (10%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEK-VYSFLGRI 87 + GC N+ DS + F + GY + ++ V+NTC E A E+ + + L I Sbjct: 10 TMGCSKNLVDSETLMKQFEANGYHCTHDAKRPQGEIAVINTCGFIESAKEESINTILEFI 69 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 + + R+ + + V GC++Q +E+ P V+ G Y +L A GK Sbjct: 70 QAKEEGRLNK-----LYVMGCLSQRYKDELEAEMPQVDKFYGKFNYKQL-----LADLGK 119 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRGIE 202 + + DG +R +T A+L I EGC++ C +C +P G Sbjct: 120 SFIPS-------------CDG----QRHLTTPRHYAYLKISEGCNRQCAYCAIPAMTGKH 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR +++E ++L+ GV E+ ++ Q + + G LDG + ++L+ +++++ G+ Sbjct: 163 QSRKKEDIINEVKELVAQGVKELQIIAQELTYY-GVDLDGRR-QVAELIEAIADVPGVQW 220 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R ++P + L+ + YL + +Q SD +L M R + E +I +I Sbjct: 221 IRLHYAYPNEFPLELLDVMRRKSNVCKYLDIALQHISDPVLAKMKRNVSKEETLNLIKKI 280 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-Q 381 R P I + + +VG PGET + F+ +D V + + + +F YS GT + E + Sbjct: 281 REAVPGIHLRTTLMVGHPGETKEAFQELLDFVRETRFERMGAFAYSEEEGTYSACHYEDE 340 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS---- 437 + K RL L +E + VG+++ +I++ KE +GRS + Sbjct: 341 ISAEEKQRRLDDLMALQQEISSEIEEEKVGKVLLTVIDR--KEGDYYIGRSEFCSPEVDP 398 Query: 438 --VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ ++ IG V+IT+ LYGE+V Sbjct: 399 EILIPATRRLRIGTFYNVKITNSDAFDLYGEIV 431 >gi|218294853|ref|ZP_03495707.1| MiaB-like tRNA modifying enzyme [Thermus aquaticus Y51MC23] gi|218244761|gb|EED11285.1| MiaB-like tRNA modifying enzyme [Thermus aquaticus Y51MC23] Length = 435 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 125/450 (27%), Positives = 218/450 (48%), Gaps = 37/450 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVYSFL 84 R ++ GC++N ++ + + E V ADL+V+NTC + A + Sbjct: 2 RAAFRTLGCKVNQVETEALLGFLKALEPEVVPVEAGGADLVVINTCAVTTTAEADARKEI 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R R + + +VV GC A+ EE+ + + VV LP+++ R Sbjct: 62 RRAR-------RHNPEAFIVVTGCYAELSPEEV--EALGADAVVPNARKAELPKVILE-R 111 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 FG + +D E + G R V AFL +Q+GC C +C++P RG E Sbjct: 112 FG---LPSDPITTPPNEFWGAGERGLLNSR-VRAFLKVQDGCQAGCAYCIIPRLRGKERH 167 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLVR 262 R + + EA L+ G+ EI L G + ++RG +GL G + LY L + Sbjct: 168 RDYREALAEAEALLRVGIKEIVLTGVRLGSYRGHPRGLAG----LVEDLYHLG-----AK 218 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R ++ P D + L++ + P+LHL +Q+GSDR+LK M RR+ YR ++ R Sbjct: 219 VRLSSIEPEDTGEDLLRVIARYAPEVRPHLHLSLQTGSDRLLKLMGRRYDKAYYRALVQR 278 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 + P A+++D I G P ET+++ R T+ ++++ + +F Y+PR T ++M Q Sbjct: 279 AYELIPGFALTTDVIAGLPTETEEEHRETLAFLEELRPTRVHAFTYTPRPKTRAASM-PQ 337 Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 V V+ R L+ L ++L E+++ +G +EVL+E+ ++ G L+G +P Sbjct: 338 VPIEVRKRRTRELIALAQRLAEERIRPK---LGGEVEVLVER--RQGGFLLGHTPDYYEA 392 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 L + G+ + + + V+ TL G +V Sbjct: 393 RLEGQALP-GETVLMAVEGVEGYTLLGRVV 421 >gi|308061638|gb|ADO03526.1| hypothetical protein HPCU_01755 [Helicobacter pylori Cuz20] Length = 418 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 102/364 (28%), Positives = 175/364 (48%), Gaps = 38/364 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF--FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 ++ + K++GC+ N++D+ M + FS E +AD+I++N+C + A V S Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEE----QEADIIIINSCTVTNGADSAVRS 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-E 141 + ++ L V+ GC + +G+E+ + + V G ++ LL E Sbjct: 58 YAKKMARLNKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE 107 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + RF D ++E+K ++V + R AF+ IQEGCD C +C++P RG Sbjct: 108 KKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGR 159 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIK 258 S +++++ L GV E+ L G NV ++ RG + + L+ LS+I Sbjct: 160 ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI-------ARLIKKLSQIA 212 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 GL R+R + P + + + D L +LH+ +Q D +L+ MNRR+ R++ Sbjct: 213 GLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQHSHDFMLEKMNRRNRIKSDREL 271 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++ I S + AI +DFIVG PGE+ F ++ + F YS R TP S M Sbjct: 272 LEIIAS--KNFAIGTDFIVGHPGESGSVFEEAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329 Query: 379 LEQV 382 + V Sbjct: 330 TDSV 333 >gi|294496305|ref|YP_003542798.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219] gi|292667304|gb|ADE37153.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219] Length = 406 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 114/397 (28%), Positives = 191/397 (48%), Gaps = 36/397 (9%) Query: 55 RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG--DLLVVVAGCVAQA 112 R+ S +A +I+ NTC +++ +K+ +IKE G V+V GC+ Q Sbjct: 6 RLVSEREAKVIICNTCTVKDTTEQKILH-----------KIKEWGLQGREVIVTGCMPQV 54 Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERA--RFGKRVVDTDYSVEDKFERLSIVDGGY 170 + +EIL +P V+V+ G + +L +L R R + ED E L V Sbjct: 55 QLDEILENNPEVHVL-GMNSLLKLGVILNRVHERLEGYSLRPMSVFEDSPEGLLNVP--- 110 Query: 171 NRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL 228 RKR I +GC+ C++C+V RG S +V + + + G E+ L Sbjct: 111 -RKRFSPNIHICQISQGCNNRCSYCIVTLARGPLYSFDADSIVTDIEQAVYEGCSEVWLT 169 Query: 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCLIKAHGDLD 285 Q+ + G+D E LL ++ I G R+R +P + D L++A+ Sbjct: 170 SQDNAQY---GMDKE-IHLPALLERITAIPGDFRVRVGMMNPASTLGILDELLRAYSSEK 225 Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345 V LHLP+QS SD+IL+ M R+HT + I+++ R+ P+ + +D IVGFPGE ++ Sbjct: 226 VYK-VLHLPIQSASDKILEKMRRKHTMEQANFIVEKFRNAFPESTLFTDIIVGFPGEDEE 284 Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE--QVDENVKAERLLCLQKKLREQQV 403 DF T+D + + +Y+PR P + L+ +D + ER L + + ++ Sbjct: 285 DFELTLDWIRTYHPDKVNISRYTPR---PHTEALQFRNIDTRIVVERSGKLHRLCNQIKL 341 Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440 + VG+ +EV I + K KG L+ R+ + VV+ Sbjct: 342 GKKEDMVGREVEVFISQKAKVKG-LMSRTDSYKPVVI 377 >gi|307720469|ref|YP_003891609.1| 30S ribosomal protein S12P methylthiotransferase [Sulfurimonas autotrophica DSM 16294] gi|306978562|gb|ADN08597.1| SSU ribosomal protein S12P methylthiotransferase [Sulfurimonas autotrophica DSM 16294] Length = 441 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 103/421 (24%), Positives = 205/421 (48%), Gaps = 47/421 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + + + S GC N+ D+ M M Q +E ++ ++AD+I++NTC + A E+ Sbjct: 1 MSNKLHIVSLGCTKNLVDTEVM--MGKLQNFELTDNNEEADVIIVNTCGFIDAAKEES-- 56 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-- 140 L + +L ++R KE D ++V+AGC+++ +E++ + P V++ G Y ++ ELL Sbjct: 57 -LNTVLSLHDAR-KE--DSVLVMAGCLSERYQDELMEQIPEVDIFTGVGDYDKIDELLVA 112 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYT 198 +++RF V ++DG G + A++ + EGC++ C+FC +P Sbjct: 113 KKSRFSDEVF--------------LIDGAERVVTGSSYHAYIKLSEGCNQTCSFCAIPSF 158 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI 257 +G SR L + E L+ G + + + Q+ +++ R + + K S L+ + I Sbjct: 159 KGKLHSRDLDSIAKEVEGLVAKGYWDFSFVSQDSSSYLRDQNV---KDGLSLLMQRIELI 215 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +G+ R +P S L++ G + Y +P+Q +D +L+ M R + + Sbjct: 216 EGVKSARILYLYPSTTSMKLLQNIGKSKIFHNYFDMPIQHINDDMLRIMKRGFGKEKTLE 275 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +++ ++S+ P+ + + FIVG P ET + F + + + + F YS T + Sbjct: 276 LLNYMQSL-PNSFVRTSFIVGHPHETQEMFDEMCEFAENFSFDRINVFSYSDEETTSAYD 334 Query: 378 MLEQVDENVKAERLL--------CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 M +++ + VKAER C +K L+++ VG+ +++I+ E L+ Sbjct: 335 MQDKISDEVKAERAQILGDIAAECTKKSLQKE--------VGKTRQIVIDGESDEHEYLL 386 Query: 430 G 430 Sbjct: 387 S 387 >gi|156322244|ref|XP_001618317.1| hypothetical protein NEMVEDRAFT_v1g225281 [Nematostella vectensis] gi|156198441|gb|EDO26217.1| predicted protein [Nematostella vectensis] Length = 514 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/321 (27%), Positives = 164/321 (51%), Gaps = 30/321 (9%) Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226 +G + A+ EGC+ +FC++P RG +SR + +V+ EA +L+ +GV E+ Sbjct: 205 NGKASAHNAPLAYPKFSEGCNHSGSFCIIPSMRGKLVSRPVGEVLSEAERLVKSGVRELL 264 Query: 227 LLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275 ++ Q+ +A W G+ + K +++ +LS + VRL Y +P Sbjct: 265 VISQDTSAYGVDVKYKTDFWNGQPV---KTRMTEMCEALSSMGVWVRLHYVYPYPHVDEL 321 Query: 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI--IDRIRSVRPDIAISS 333 + A G + +PYL +P Q S ++LK+M R A+E + + I R + P++ I S Sbjct: 322 IPLMAAGKI---LPYLDIPFQHASPKVLKAMKR--PAFEDKTLARIKNWREICPELTIRS 376 Query: 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA---ER 390 FIVGFPGET++DF+ ++ + + + F+YSP G + + V +++K +R Sbjct: 377 TFIVGFPGETEEDFQYLLNWLTEAQLDRVGCFQYSPVEGAHANLLDNPVPDDIKQDRWDR 436 Query: 391 LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQ-SVVLNSKNHNI 447 + Q+ + ++ VG+ ++VLI++ + + +P + SV + S N N Sbjct: 437 FMAHQQAISTARLQLK---VGKEMDVLIDEVDDQGAVARCYADAPEIDGSVFIASTNVNP 493 Query: 448 GDIIKVRITDVKISTLYGELV 468 GD ++VRI D ++ EL+ Sbjct: 494 GDKVRVRIVDADEYDMWAELI 514 Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V++ DAD++V+NTC + A + Sbjct: 139 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVSTYQDADVVVVNTCGFIDSAKAESLEV 197 Query: 84 LGRIRNLKNSRIKEGG 99 +G IKE G Sbjct: 198 IGE-------AIKENG 206 >gi|221106620|ref|XP_002155994.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 421 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 107/371 (28%), Positives = 178/371 (47%), Gaps = 37/371 (9%) Query: 22 IVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAA 77 I+P Q ++K++GC N DS M + + GY +V + D +ADL +LN+C ++ A Sbjct: 65 IIPGTQCIYIKTWGCTHNNSDSEYMAGLLAAYGY-KVTTSDPLNADLWLLNSCTVKNPAE 123 Query: 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE--GEEILRRSPIVNVVVGPQTYYR 135 E + + + + L VV+AGCV Q + GE + S +VG Q R Sbjct: 124 ESFKNEIKKAQELNK---------YVVLAGCVPQGQPRGEFMKGLS-----IVGVQQIDR 169 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYN----RKRGVTAFLTIQEGCDKFCT 191 + E++E G V + K I N RK + + I GC CT Sbjct: 170 VVEVVEETLKGHSV---RLFGKKKLNGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNQCT 226 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 +C + RG S ++V ++ + GV EI L ++ A+ GK + T +LL Sbjct: 227 YCKTKHARGELGSYPPEEIVARVKQSFEEGVVEIWLTSEDTGAY-GKDIG---VTLPELL 282 Query: 252 YSLSEI---KGLVRLRYTTS-HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 + + E+ GL+R+ T + ++ D + K V +LH+PVQSGS+ +L M Sbjct: 283 WQIIEVIPPGGLMRIGMTNPPYIKEYLDEMAKILNHPRVYS-FLHIPVQSGSNNVLHDMK 341 Query: 308 RRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 R + +++ ++ ++ P + I++D I GFP ET +DF + LV + + F ++ Sbjct: 342 REYRIEDFKNTVNFLKDRVPRLTIATDIICGFPTETLEDFADSCALVQEYQFPSLFINQF 401 Query: 368 SPRLGTPGSNM 378 PR GTP +NM Sbjct: 402 FPRPGTPAANM 412 >gi|94266362|ref|ZP_01290062.1| MiaB-like tRNA modifying enzyme [delta proteobacterium MLMS-1] gi|93453045|gb|EAT03530.1| MiaB-like tRNA modifying enzyme [delta proteobacterium MLMS-1] Length = 470 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 106/396 (26%), Positives = 186/396 (46%), Gaps = 14/396 (3%) Query: 25 QRFFVKSYGCQMNVYDSLR-MEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 +R V + GC++N Y+S + ++ +G E V AD+ V+NTC + +A + Sbjct: 10 KRVAVTTLGCKVNQYESAAFLSELAEREGVEIVPFEQAADVYVINTCAVTARAGAQSRQL 69 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + R + +R+ VV GC AQ +E+L +VG R+ ++ Sbjct: 70 IRRAARCRRARL--------VVTGCYAQVAPQEVLELVGNPLCIVGNAHKERVAQIAAAG 121 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R + + + +V R R V L +Q+GC + C++C+VP RG Sbjct: 122 RSCDLEMYHGEMGDCRQVAPLLVKAATARSRAV---LKVQDGCSQACSYCIVPRARGRSR 178 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S +V+ +A G E L G ++ + G+ L L L+ L R Sbjct: 179 SVLPERVLRQAEIFAAAGHREAVLTGIHLGHY-GRDLTPPGSLLGLLEQLLARDLPL-RY 236 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ ++ L+ L+P+LH+P+QSG DRIL++MNR + + +I+R Sbjct: 237 RLSSLEATEIGPDLLALLAAESRLLPHLHIPLQSGDDRILRAMNRPYDRARFAAVIERCA 296 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P+ AI D + GFPGE + F+ T +L+ + + F YS R GTP + + +QV Sbjct: 297 AALPEAAIGIDVMTGFPGEDEPAFQHTYELLAALPISYLHVFPYSQRAGTPAARLPDQVP 356 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 V+ +R L++ ++++F +G+ VL+E Sbjct: 357 GPVRDQRAARLRELGESKKIAFYQRFLGRQRRVLVE 392 >gi|256825609|ref|YP_003149569.1| MiaB-like tRNA modifying enzyme YliG [Kytococcus sedentarius DSM 20547] gi|256689002|gb|ACV06804.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Kytococcus sedentarius DSM 20547] Length = 526 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/293 (30%), Positives = 143/293 (48%), Gaps = 15/293 (5%) Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237 A L I GCD+ C+FC +P RG +SR + V+ EA L +NGV E+ L+ +N ++ G Sbjct: 221 APLKIASGCDRRCSFCAIPAFRGAYLSRRPTDVLAEAHWLAENGVKEVFLVSENTTSY-G 279 Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297 K L G+ +L L+ I G+ R+R + P +M L++A + ++PY L Q Sbjct: 280 KDL-GDLRLLDTMLPELAAIDGIERVRVSYLQPAEMRPELLRAMVETPGVVPYFDLSFQH 338 Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 S +L+ M R A + +ID++R+ PD + S+ I GFPGET+ D D V + Sbjct: 339 ASGPLLRRMRRFGDAEGFLGLIDQVRTASPDAGLRSNVICGFPGETEQDVEVLADFVTRA 398 Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417 F YS GT G + ++ + V ER+ ++ E VG + VL Sbjct: 399 QLDVLGVFGYSDEDGTEGEKLDGKLPQEVIDERVAHIRDLAEEVMAQRAADRVGDAVSVL 458 Query: 418 IEKH---GKEKGKLVGR----SPWLQSVVL------NSKNHNIGDIIKVRITD 457 +E H G+ ++VGR P + V + + +GDI++ + D Sbjct: 459 VEAHEDEGEAGTQVVGRPEQQGPEVDGVTILVDAAGAPADVAVGDIVRATVVD 511 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 8/128 (6%) Query: 13 MVSQIVDQCIVP----QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68 M S D+ P + + + GC N DS + + G+E V+ D AD+ V+N Sbjct: 1 MSSATTDRAAAPDTERRSVHIATLGCTRNEVDSEELAGRLAAAGWELVDEADGADVTVVN 60 Query: 69 TCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVV 128 TC ++A + + +LK +EG VV GC+A+ G E+ P + V+ Sbjct: 61 TCGFVDQAKKDSIDAVLDAHDLK----EEGRTGAVVAVGCLAERYGNELAAELPEADAVL 116 Query: 129 GPQTYYRL 136 G +Y + Sbjct: 117 GFDSYADM 124 >gi|239907919|ref|YP_002954660.1| hypothetical protein DMR_32830 [Desulfovibrio magneticus RS-1] gi|239797785|dbj|BAH76774.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 627 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 109/388 (28%), Positives = 178/388 (45%), Gaps = 30/388 (7%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+RF++ + GC++N Y++ + + F ++G+ S DAD IVL +C + +A + Sbjct: 6 PRRFWLATLGCKVNQYEARALAEAFAAKGWSPAPSPADADRIVLISCAVTARAESES--- 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 R L + I+E V A GC A E +G +P+ Sbjct: 63 ----RRLARALIREAKPGTEVAATGCAAAVHPEAF--------AALG---AVPMPDKDRL 107 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A + D F L++ GY+R R A L IQ+GC CT+C+VP RG Sbjct: 108 AAASDTLAPCPPRPGDHFPNLAVA--GYDRAR---ALLKIQDGCSHGCTYCIVPAARGPS 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF---SDLLYSLSEIKG 259 +SR ++ EAR+L+D G E+ L G N+ + G L + +DL L G Sbjct: 163 VSRPYPAILAEARRLLDAGHAELGLTGINLGHF-GPDLAPPMSFWRLVADLERDLLASHG 221 Query: 260 LV-RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQ 317 RLR + P + + G+ + +LH+ +QS +L +MNRR + A Sbjct: 222 PAFRLRLGSLDPAMLDAEGLAVLGESRRVCRHLHISLQSADPGVLGAMNRRPNDADAVSF 281 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +D++ +A+ D + GFPGE D AT + ++ + A F YS R GTP + Sbjct: 282 FVDKLGMKWGRMALGLDLLAGFPGEADTAHAATAAFLTRLPVSYAHVFPYSRRPGTPAAT 341 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSF 405 M Q+ + +K R L++ ++ +F Sbjct: 342 MAGQLPKEIKTRRAAELRRTAEDKARAF 369 >gi|289642441|ref|ZP_06474587.1| MiaB-like tRNA modifying enzyme YliG [Frankia symbiont of Datisca glomerata] gi|289507786|gb|EFD28739.1| MiaB-like tRNA modifying enzyme YliG [Frankia symbiont of Datisca glomerata] Length = 485 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 112/382 (29%), Positives = 169/382 (44%), Gaps = 33/382 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + + GC N DS + G+ V+ AD +V+NTC + A + L Sbjct: 7 RRVALITLGCARNDVDSEELAARLGGDGWAVVDDPVTADAVVVNTCGFVDVAKKDSIDTL 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +L+++ GG VV GC+A+ G ++ P + V+G Y L L+ Sbjct: 67 LAAADLRDAATDAGGPKAVVAVGCLAERYGRQLADSLPEADAVLGFDAYPTLGSHLDAVL 126 Query: 145 FGKR--------------VVDTDYSVEDKFERLSIVDGG-YNRKR---GVTAFLTIQEGC 186 G++ + D E + ER G R+R G A L I GC Sbjct: 127 RGEKPAAHTPRDRRTLLPITPVDRQAE-RTERAGPASGPPVLRQRLLGGPVASLKISSGC 185 Query: 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246 D+ C FC +P RG +SR V+ EA L GV E+ L+ +N ++ GK L G+ Sbjct: 186 DRRCAFCAIPTFRGAHVSRPPQDVLAEAEWLAGQGVRELVLVSENSTSY-GKDL-GDLRA 243 Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 LL L+ I G+VR+R P ++ L++ + PYL L Q S +L+ M Sbjct: 244 LEKLLPQLAAIAGVVRVRAVYLQPAEVRPSLLETVLTTPGVAPYLDLSFQHASPSVLRRM 303 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD------FRATMDLVDKIGYA 360 R A + ++ R R++ PD+ S+ IVGFPGET D F DL D +G Sbjct: 304 RRFGGADAFLDLLARARALAPDLGARSNVIVGFPGETRADVALLERFLTDADL-DAVGV- 361 Query: 361 QAFSFKYSPRLGTPGSNMLEQV 382 F YS GT + + +V Sbjct: 362 ----FGYSDEDGTEAATLPGKV 379 >gi|261260656|gb|ACX55014.1| YmcB [Bacillus amyloliquefaciens] Length = 208 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 114/206 (55%), Gaps = 2/206 (0%) Query: 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 DL+ L +I + R+R+TTSHPRD D LI+ L+ ++HLPVQSGS +LK M Sbjct: 4 LGDLMDELRKI-DIPRIRFTTSHPRDFDDHLIEVLAKGGNLLDHIHLPVQSGSSAMLKMM 62 Query: 307 NRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 R++ Y +++ +I++ P+ ++++D IVGFP ETD+ F T+ L ++ + A++F Sbjct: 63 ARKYDRERYLELVGKIKAAMPNASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFI 122 Query: 367 YSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 YSPR GTP + M + V VK ERL L ++E G+ +EVL+E K Sbjct: 123 YSPREGTPAAKMKDNVPMRVKKERLQRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNP 182 Query: 427 K-LVGRSPWLQSVVLNSKNHNIGDII 451 L G + + V IG I+ Sbjct: 183 DILAGYTEKSKLVNFKGPKDAIGKIV 208 >gi|67462443|ref|XP_647883.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica HM-1:IMSS] gi|56463504|gb|EAL42497.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica HM-1:IMSS] Length = 438 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/373 (25%), Positives = 179/373 (47%), Gaps = 42/373 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDAD----LIVLNTCHIREKAAEKVYSFLGR 86 +YGC NV DS M+ + GY+ +S +V+N+C ++ + + + + Sbjct: 14 TYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAIDVVQKK 73 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 E ++ +V+AGCV QA+ + +VG +++ E +E+A Sbjct: 74 C---------EEANVPLVIAGCVPQADPKACHCSKKCS--IVGVDQLHKITEAVEKA--- 119 Query: 147 KRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 T + ER ++VD + R + + GC+ C++C + RG S Sbjct: 120 -----THNEGQSYLERGALVDIDDHVRSNPLIDIIVTCTGCENACSYCKTKHARGGLRSY 174 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK------- 258 + ++V ++ +D GV EI L G+++ A+ GLD TF +L + E+ Sbjct: 175 PIEELVKRVQQSVDEGVKEIRLTGEDIGAY---GLDIND-TFPHMLERICEVVDGKAMLR 230 Query: 259 -GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 G+V Y + ++ + L++ +LH+P+QSGS +L +M R++T E+ Sbjct: 231 IGMVNPPYIIKYFNEIVNILLRP-----CCFKFLHIPIQSGSTSVLDAMKRKYTREEFDD 285 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 + +R+R P I+I++D I GFP ETD+D + T++ ++K + + R GTP + Sbjct: 286 VCNRLRIAVPGISIATDIICGFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPGTPAAK 345 Query: 378 MLEQVDENVKAER 390 M +Q++ + +R Sbjct: 346 M-KQINSKIVKQR 357 >gi|242310194|ref|ZP_04809349.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523491|gb|EEQ63357.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 443 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/386 (24%), Positives = 185/386 (47%), Gaps = 29/386 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVY 81 + ++ + S GC N+ DS M YE + +AD++++NTC E A E + Sbjct: 1 MSKKLHLISLGCTKNLVDSEVMLGKL--SEYENTQEIKEADVVIVNTCGFIEAAKTESIQ 58 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L + N K + I +V +GC+++ +E+ P ++++ G Y ++ ++E Sbjct: 59 TILEALNNKKENAI-------LVASGCLSERYAKELKEEIPEIDIITGVGDYDKIDLMIE 111 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 + + G++++ V E + G + A++ + EGC++ C+FC +P +G Sbjct: 112 KRKKGEKILSNANGVFLANENDKRIISGSK----IHAYIKLSEGCNQKCSFCAIPSFKGK 167 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCTFSDLLYSLSEIK- 258 SR+L + E + L G + T + Q+ +++ R G+ DG DL+ + ++ Sbjct: 168 LHSRTLESTLKEVQNLAQKGFSDFTFISQDSSSYLRDLGIKDG----LVDLVKGIDKLAK 223 Query: 259 ---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 G+ R +P S LI+ D + Y +P+Q S ++LK M R E+ Sbjct: 224 EGIGIKSARILYLYPATTSKKLIQTIIDSPIFHNYFDMPLQHISQKVLKQMGR---GGEF 280 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 +++++ +R P+ + + FI+G PGE + DF + V+K + + F YS GT Sbjct: 281 KELLEMMRQA-PNSFVRTSFIIGHPGEEESDFVELCEFVEKFHFDRINFFAYSKEEGTKS 339 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQ 401 + M EQ+ RL + + ++Q Sbjct: 340 AKM-EQIPNKTINARLKKINQIFQKQ 364 >gi|218682291|ref|ZP_03529892.1| MiaB-like tRNA modifying enzyme [Rhizobium etli CIAT 894] Length = 302 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/318 (30%), Positives = 150/318 (47%), Gaps = 31/318 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N Y+S M+ G + I++NTC + +A + Sbjct: 6 VITFGCRLNTYESEVMKAQAEKAGLN--------NAILVNTCAVTGEAVRQARQ------ 51 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ------TYYRLPELLER 142 ++ ++V GC AQ E + + V+ V+G + +Y LP+ Sbjct: 52 -AIRRARRDNPHARIIVTGCAAQTEKQTFAEMAE-VDAVLGNEEKLSSTSYRSLPDFGVS 109 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A RV D + + +DG V AF+ +Q GCD CTFC++PY RG Sbjct: 110 AEEKLRVNDIMSVKATAPQMVRHIDGH------VRAFIQVQNGCDHRCTFCIIPYGRGNS 163 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLV 261 S + VVD+ARKL D+G CEI L G + ++ G L G T L + L +I + Sbjct: 164 RSVPMGAVVDQARKLADSGYCEIVLTGVDATSY-GADLPGTP-TLGLLAKTLLKQIPEIR 221 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR ++ + L+ D MP+LHL +Q G D ILK M RRH+ + + I+ Sbjct: 222 RLRLSSIDSIEADAHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHSRADALRFIEE 281 Query: 322 IRSVRPDIAISSDFIVGF 339 R +RP+++ +D I GF Sbjct: 282 ARHLRPEMSFGADMIAGF 299 >gi|303327235|ref|ZP_07357677.1| RNA modification enzyme, MiaB-family [Desulfovibrio sp. 3_1_syn3] gi|302863223|gb|EFL86155.1| RNA modification enzyme, MiaB-family [Desulfovibrio sp. 3_1_syn3] Length = 493 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 106/382 (27%), Positives = 176/382 (46%), Gaps = 42/382 (10%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +FF+ ++GC++N Y+S + + + G E + +AD++ +N+C I K + + Sbjct: 27 KFFIATFGCKVNQYESQSLREAWQKLGGEECDVPGEADVLCVNSCAITAKGERDARNAVF 86 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQ-------------AEGEEILRRSPIVNVVVGPQT 132 R+R +E +++ GC A+ AE + ++ + ++ GP Sbjct: 87 RLR-------REAPAARLILTGCAARLFTKFRPRPGAAWAEPDLLVPQEDKSRLLRGPWP 139 Query: 133 YYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTF 192 P L F I + R R V L +Q+GC CT+ Sbjct: 140 EGNAPGL-------PAAESIRAEAPANFPPFRISS--FRRARPV---LKVQDGCAHRCTY 187 Query: 193 CVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLL 251 C+VP TRG SR+ +V+DEAR+L+ G E+ L G N+ R G D + F DLL Sbjct: 188 CIVPLTRGRPRSRAPQEVLDEARRLLRAGHAELMLSGVNL---RQYGRDVPDYGGFWDLL 244 Query: 252 YSL-----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM 306 L E G RLR ++ P + ++ +L P+LH+ +Q S +LK M Sbjct: 245 RFLDGHLAPEFAGRARLRISSLEPSQLDRRGLETLTACRMLCPHLHISLQHASPAVLKRM 304 Query: 307 NRRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 R H TA + + + + P + + +D +VGFPGETD+D R ++LV ++ + A F Sbjct: 305 GRGHYTAGMLEEGVAALAAHWPRMGLGADILVGFPGETDEDLRLLLELVQRLPLSYAHVF 364 Query: 366 KYSPRLGTPGSNMLEQVDENVK 387 YS R GT + + +K Sbjct: 365 PYSRRPGTAAEAFAGHLPQALK 386 >gi|291288283|ref|YP_003505099.1| MiaB-like tRNA modifying enzyme YliG [Denitrovibrio acetiphilus DSM 12809] gi|290885443|gb|ADD69143.1| MiaB-like tRNA modifying enzyme YliG [Denitrovibrio acetiphilus DSM 12809] Length = 435 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 104/367 (28%), Positives = 168/367 (45%), Gaps = 25/367 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA-AEKVYSFLGRIRN 89 S GC N D + G++ N +++D I++NTC E A AE + + L Sbjct: 10 SLGCSKNQVDLEYLMGAIEKAGFQITNIPEESDAIIVNTCGFIEPAVAEAIDNILEM--- 66 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 R K G L +V GC+++ +E+ P V+ G ++ L Sbjct: 67 --GERRKAGAKL--IVTGCMSERYSDEMKTEFPEVDYFTGVGDLQKVVGYL--------- 113 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 ++ D +V D + + + Y A+L + EGCD C++C +P RG +SR + Sbjct: 114 LEDDSAVPDYGDARILANEHY------FAYLKVSEGCDNRCSYCAIPGIRGGLVSRKMED 167 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 +V EA L+D GV E+ ++ Q+ N GK + G K + +LL L I+G ++R + Sbjct: 168 IVKEAESLVDGGVKELIVISQD-NTKYGKDIYG-KPSMPELLKKLEGIEGDFKIRIMYLN 225 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P ++ LI ++ Y +PVQ SD++LK+M R+ + + D IR P+ Sbjct: 226 PDGVTQELIDVICGSKKILSYFDIPVQHYSDKMLKAMKRKSDSSIIDDVYDSIRKADPES 285 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 I + IVGFPGET+ DF + + A F Y GT + V + Sbjct: 286 FIRTTMIVGFPGETEGDFAELEKFLTRHKPDFAGFFPYYREKGTSAYELGASVGKRETNR 345 Query: 390 RLLCLQK 396 R+ LQK Sbjct: 346 RIRALQK 352 >gi|255261196|ref|ZP_05340538.1| conserved hypothetical protein [Thalassiobium sp. R2A62] gi|255103531|gb|EET46205.1| conserved hypothetical protein [Thalassiobium sp. R2A62] Length = 464 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 119/461 (25%), Positives = 207/461 (44%), Gaps = 53/461 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC + DS R+ ++GY A+ +++NTC + A + +G Sbjct: 33 SLGCPKALVDSERILTRLRAEGYAISPDYSGAEAVIVNTCGFLDSAKAESLDAIGEALT- 91 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 +N + V+V GC+ AE + I P + V GPQ Y ++V+ Sbjct: 92 QNGK--------VIVTGCLG-AEPDYIREHHPKILAVTGPQQY-------------EQVL 129 Query: 151 DTDYSV----EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 D +S D F L G R + +L I EGC+ C FC++P RG SR Sbjct: 130 DAVHSCVPPDPDPFIDLLPATGVSLTPRHYS-YLKISEGCNHKCKFCIIPDMRGRLASRP 188 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLYSLS 255 + V+ EA KL++NGV E+ ++ Q+ +A+ GLD + + +DL L Sbjct: 189 VHAVLREAEKLVENGVNELLVISQDTSAY---GLDRKYDVHPWKDREVRSHITDLTRELG 245 Query: 256 EIKGLVRLRYTTSHP--RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 ++ VRL Y +P RD+ + + ++PYL +P Q +L+ M R A Sbjct: 246 QLGAWVRLHYVYPYPHVRDLIPLMADPE---NGVLPYLDIPFQHAHPDVLRRMARPAAAA 302 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 I R+ P+I + S FIVG+PGET+ +F+ +D +D+ + F+Y G Sbjct: 303 RTLDEIAAWRAECPNITLRSTFIVGYPGETEAEFQHLLDWMDEAQLDRVGCFQYENVDGA 362 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII---EVLIEKHGKEKGKLVG 430 +++ + V VK +R +K + + +A VG ++ I++ G + + Sbjct: 363 RSNDLPDHVAPEVKQDRWDRFMEKAQAISEAKLEAKVGSVMDVIVDDIDEDGVATCRTMA 422 Query: 431 RSPWLQSVVL---NSKNHNIGDIIKVRITDVKISTLYGELV 468 +P + + + ++G+I+ V + + L+G LV Sbjct: 423 DAPEIDGNLFIDEGTSGLSVGEIVSVEVDEAGEYDLWGALV 463 >gi|159475142|ref|XP_001695682.1| predicted protein [Chlamydomonas reinhardtii] gi|158275693|gb|EDP01469.1| predicted protein [Chlamydomonas reinhardtii] Length = 435 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 117/455 (25%), Positives = 203/455 (44%), Gaps = 37/455 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSM--DDADLIVLNTCHIREKAAEKVYS 82 Q +VK++GC N+ DS M GY V D ADL ++N+C ++ + + + Sbjct: 7 QAVWVKTFGCSHNISDSEYMAGQLSDYGYRLVEDAERDAADLWLINSCTVKGPSQAGMSN 66 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + + G VVVAGCV Q G++ L V+V+ G R+ E +E Sbjct: 67 LIA---------AGKAGGKRVVVAGCVPQ--GDKKLPELQGVSVL-GVTQIDRVVEAVEE 114 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V + RL + N+ + I GC CT+C + RG Sbjct: 115 TLRGNTV---SMLAKKALPRLDLPKVRRNKH---IEIVPISTGCLGACTYCKTKHARGHL 168 Query: 203 ISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 S + + + R+ D V EI L ++ A+ G+ + D L ++ G Sbjct: 169 GSYDPAALAERVRQAAADPWVREIWLSSEDTGAY-GRDIGSSLPELLDKLIAVLPPDGRT 227 Query: 262 RLRYTTSHPR---DMSDCLIKA--HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 LR ++P + + L KA H + YLH+PVQS SD +L++M R +T E+R Sbjct: 228 LLRVGMTNPPYVLEHLEALCKALRH---PCVFSYLHVPVQSASDAVLEAMKREYTVAEFR 284 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ++ID + + P + +++D I FPGE+ +D AT++L+ + ++ PR GTP + Sbjct: 285 RVIDTLLAGVPGMELATDIITAFPGESPEDHAATLELLRTYRFPHTHISQFYPRPGTPAA 344 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDA---CVGQIIEVLIEKHGKEKGKLVGRSP 433 M ++ V +R ++L + S+ D VG + ++ + LV + Sbjct: 345 RMKNKIPTQVSKQR----SRELAAEVDSWADVYQHLVGTVQRAVVVDTAADGVSLVAHTR 400 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V+L + +G +++V I ++ G +V Sbjct: 401 SYTQVLLEPQPGLMGAVVEVAIDSASRWSVRGRVV 435 >gi|298373642|ref|ZP_06983631.1| 2-methylthioadenine synthetase [Bacteroidetes oral taxon 274 str. F0058] gi|298274694|gb|EFI16246.1| 2-methylthioadenine synthetase [Bacteroidetes oral taxon 274 str. F0058] Length = 431 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 123/453 (27%), Positives = 217/453 (47%), Gaps = 42/453 (9%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTC-HIREKAAEKVYSFLG 85 V + GC N+ DS R+ F G+ + +++V+NTC I E + + L Sbjct: 8 VITLGCSKNLVDSERLMRQFAYNGFLTRHEPRSVGGEIVVVNTCGFIGSAKEESINTILS 67 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 I K +I + ++V GC+++ ++++R P V+ G + ++ Sbjct: 68 LIEAKKKRKIGK-----LIVMGCLSERYRDDLIRELPEVDRFYGKFDWKQI--------- 113 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 + D S E ++ + A++ I EGC++ C++C +P G SR Sbjct: 114 ---ISDIGCSYNKLLENERLITTPSH-----LAYVKIAEGCNRKCSYCAIPIITGRHRSR 165 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 S+ + E R L+ GV E L+ Q++ + G+ L K + + L+ L++I G+ LR Sbjct: 166 SIEDIEHEIRSLVRGGVKEFNLIAQDLTYY-GRDL-YRKPSIARLVDRLAKIDGVEWLRL 223 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P L A D + YL + +Q SD +L+ M R T E +I IR Sbjct: 224 HYAYPAHFPKDLPAAIADHPNVCNYLDMALQHISDNMLRKMRRNITKAETIDLIADIRRQ 283 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDE 384 PDI + + ++G P E ++DF + V+ + + + +F YS GT + +++ Sbjct: 284 VPDIHLRTTLLLGHPHEEEEDFEELKEFVETMRFERLGAFAYSHEEGTFADRHYRDEIPF 343 Query: 385 NVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQS 437 +VK RL + +Q+ + EQ +N VGQ++ VLI+K KE+ VGR SP + Sbjct: 344 DVKNRRLSEIMDIQEHIAEQ---YNARKVGQVLRVLIDK--KEEPYYVGRTEYDSPEVDG 398 Query: 438 VVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468 VL + +H +G+ V+ITD + L+GE+V Sbjct: 399 EVLIADSHKLRVGNFYDVKITDSQAFDLFGEVV 431 >gi|167379627|ref|XP_001735214.1| radical sam proteins [Entamoeba dispar SAW760] gi|165902883|gb|EDR28592.1| radical sam proteins, putative [Entamoeba dispar SAW760] Length = 438 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 184/376 (48%), Gaps = 48/376 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-----DLIVLNTCHIREKAAEKVYSFLG 85 +YGC NV DS M+ + GY +++S + +V+N+C ++ + + + Sbjct: 14 TYGCSHNVSDSEVMQKDLINAGY-KIDSSETPISSKYKAVVINSCTVKNPSQQAIEVVQK 72 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGE--EILRRSPIVNVVVGPQTYYRLPELLERA 143 + E ++ +V+AGCV QA+ + + ++ IV G +++ E +E+A Sbjct: 73 KC---------EEANVPLVIAGCVPQADPKACQCSKKCSIV----GVDQLHKITEAVEKA 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVD-GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 T + ER ++V+ + R + + GC+ C++C + RG Sbjct: 120 --------THNEGQSYLERGALVNIDEHVRSNPLIDVIVTCTGCENACSYCKTKHARGGL 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK---- 258 S + +V + ID GV EI L G+++ A+ GLD + TF +L + E+ Sbjct: 172 RSYPIEDLVKRVQHSIDEGVKEIRLTGEDIGAY---GLDINE-TFPHMLECICEVVEGKA 227 Query: 259 ----GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G+V Y + +++ + L++ +LH+P+QSGS +L++M R++T E Sbjct: 228 MLRIGMVNPPYIIKYFKEIVNILLRP-----CCFKFLHIPIQSGSSSVLEAMKRKYTREE 282 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + + +R+R P I+I++D I GFP ETD+D + T++ + K + + R GTP Sbjct: 283 FDDVCNRLRISVPGISIATDIICGFPTETDEDHKKTLECIQKHQFPIVNISQMYIRPGTP 342 Query: 375 GSNMLEQVDENVKAER 390 + M +Q++ + +R Sbjct: 343 AAKM-KQINSKIVKQR 357 >gi|285808445|gb|ADC35971.1| conserved hypothetical protein [uncultured bacterium 98] Length = 328 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 3/244 (1%) Query: 175 GVTAF-LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233 G TA L +Q GC++ C++C++P TRG S L V++ R+ G EI + G ++ Sbjct: 28 GRTALTLRVQTGCEEHCSYCIIPSTRGRGRSHPLPVVLENIRRGTAAGYKEIAITGVHLG 87 Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293 ++ G+ L G+ T L+ +L+E V R ++ P D + +++ L P+ HL Sbjct: 88 SY-GRDL-GDGTTLDALVRALAEWPEDVLFRISSLEPMDCTREVVRLIAGSGRLAPHFHL 145 Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 P+Q GSD +L +M R +TA Y +++ I++ PD +I +D IVGFPGETDD F T+ Sbjct: 146 PLQHGSDAMLSAMGRPYTAAYYSDLLEVIQARLPDASIGTDIIVGFPGETDDHFARTLVA 205 Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413 V+++ ++ F YS R GT +++ +VD V R ++ SF A +G Sbjct: 206 VERLPFSHVHVFPYSDRPGTAAASLPGKVDGTVVRARARAVRDAGSRLARSFQSAQIGTT 265 Query: 414 IEVL 417 L Sbjct: 266 RRAL 269 >gi|269793254|ref|YP_003318158.1| MiaB-like tRNA modifying enzyme YliG [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100889|gb|ACZ19876.1| MiaB-like tRNA modifying enzyme YliG [Thermanaerovibrio acidaminovorans DSM 6589] Length = 427 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 115/408 (28%), Positives = 181/408 (44%), Gaps = 30/408 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ +V S GC N D R + +GY +V+ ADL ++NTC A ++ + Sbjct: 3 KKVYVLSLGCAKNRVDGERFLGVALERGYVQVHEPQGADLCIINTCGFLMSAVKENLDAI 62 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 L+ + G L VV GC+ EE LRR V+ + + Y L E L A Sbjct: 63 LEAEELRRRGLI--GSLAVV--GCLVNRYEEE-LRRELQVDFLGRTECYRELGEFLGGAS 117 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G R GG V +L + EGC C +C +P RG S Sbjct: 118 EGPRRPL----------------GGSE----VVRYLKVAEGCSNRCAYCAIPLIRGDLRS 157 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 ++ +V EA L++ G EI L+ Q++ + G+ L + D + + G++RL Sbjct: 158 LPVAHLVREAELLLEQGAREICLVAQDLTRY-GEDLGTDLMELLDQMEATVRGHGVLRLL 216 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 Y HP ++ L++ DV+ YL +PVQ SDR+L SM R + + R Sbjct: 217 YL--HPTRVTRELVERVASSDVVASYLDVPVQHASDRVLASMGRAMGYEDAVRPFLEARQ 274 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 V P A+ + +VG+PGE +DF A + +++ + +F +SP GT + +V Sbjct: 275 VDPLFAMRTTLMVGYPGEGREDFDALIRFLEEARPDRVGAFVFSPEEGTQAFQLPRRVSG 334 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 RL L + E + G+ + VL+E E G+ VGRS Sbjct: 335 RTARSRLDRLMARAAEVSLDRQRLMEGREVRVLLE--AVEDGQWVGRS 380 >gi|313226156|emb|CBY21299.1| unnamed protein product [Oikopleura dioica] Length = 1581 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 106/406 (26%), Positives = 182/406 (44%), Gaps = 90/406 (22%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-----DLIVLNTCHIREKAAEK 79 Q+ +V+++GC N DS M GY+ +DDA DL +LN+C ++ A + Sbjct: 51 QKIYVRTWGCTHNTSDSEYMAGQLAEAGYDV--KLDDAKRLECDLWLLNSCTVKAPAEDH 108 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYY 134 + + + + ++ VVVAGCV Q +P V +G Q Sbjct: 109 FKNAINAAQKV---------NIPVVVAGCVPQG--------APSDKFVKGLSTIGVQQID 151 Query: 135 RLPELLE-------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181 R+ E++E + R GKR+ D + K R ++++ ++ Sbjct: 152 RVVEVVEETLKGNTVKLLGPKKRAGKRIGGADLGL-PKVRRNALIE-----------IIS 199 Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL 240 I GC CT+C + RG S + ++V + + G+ E+ L ++ A+ R G Sbjct: 200 INTGCLNSCTYCKTKHARGDLASYPIDEIVARFEQAFEQGIVEVWLTSEDTGAYGRDIGT 259 Query: 241 D------------GEKCTF----SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284 + E C ++ Y L ++G+ ++ +HPR Sbjct: 260 NIVELLNAVVKTIPEGCMMRIGMTNPPYILEHLEGIAKI---LNHPR------------- 303 Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344 + +LH+PVQSGSD +L SM R + ++ +++D +R+ PD I++D I GFP ET+ Sbjct: 304 --VYSFLHVPVQSGSDAVLNSMRREYNREDFCKVVDTLRANVPDCNIATDIIAGFPTETE 361 Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 +DF T+ L +K + F ++ PR GTP + EQ+ V ER Sbjct: 362 EDFDETISLCEKYKFPSLFMNQFFPRPGTPAAKW-EQIPRQVIKER 406 >gi|254166896|ref|ZP_04873750.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum boonei T469] gi|197624506|gb|EDY37067.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum boonei T469] Length = 386 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 117/425 (27%), Positives = 201/425 (47%), Gaps = 60/425 (14%) Query: 54 ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE 113 E V+ ++AD+I++ TC + E ++ L RI LK K +VV GC+ A Sbjct: 8 EIVSRPEEADVILIGTCVVIEHTENRM---LRRIEELKRYGKK------IVVYGCLPSA- 57 Query: 114 GEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173 R ++++ V P + +++ D S D+ + I D Sbjct: 58 ------RKELLDIDVVPIATWEF-------EMAGEILNLDRSPMDE---VFIWDA----- 96 Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVN 233 A + I GC CT+C+ RG SRS ++ +K ++ EI + Q+ Sbjct: 97 ---VATIPIANGCLGQCTYCITRLARGRVKSRSKEWILRLVKKALEQRAVEIRISAQDTA 153 Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---MSDCLIKAHGDLDVLMPY 290 A+ G+ + E ++L+ S++ I G LR PR+ + LI A+ + V + Sbjct: 154 AY-GRDIGTE---LAELINSITAIPGKFYLRVGMMEPRETLRILPELIDAYSNPKVYK-F 208 Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350 LHLPVQSG + IL MNR + ++ +I+ R P++ +S+D IVGFPGE D+ F T Sbjct: 209 LHLPVQSGDNEILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGENDESFENT 268 Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPG-------SNMLEQVDENVKAERLLCLQKKLREQQV 403 M L+ +I ++SPR TP +N +++ + + A + + K+ Sbjct: 269 MKLIKEIKPEILNITRFSPRPKTPAYKWKRPSTNKVKEWSQKLAALHMENMHKRF----- 323 Query: 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463 ++ +G+ +V++ GK +GK + RS + VVL+ N IG +RIT + S L Sbjct: 324 ---ESMLGKEFKVIVPSRGK-RGKYLARSQNYEPVVLD--NAVIGREYIIRITHYEKSHL 377 Query: 464 YGELV 468 G+++ Sbjct: 378 VGKIL 382 >gi|224436917|ref|ZP_03657898.1| hypothetical protein HcinC1_03045 [Helicobacter cinaedi CCUG 18818] gi|313143389|ref|ZP_07805582.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128420|gb|EFR46037.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 447 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 94/391 (24%), Positives = 199/391 (50%), Gaps = 24/391 (6%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M + Y+ + AD+I++NTC E A ++ + L Sbjct: 12 SLGCTKNLVDSEVMLGKL--KSYQLTPEITKADIIIVNTCGFIESAKQESIQTI-----L 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF--GKR 148 + S +++ G +LVV +GC+++ +E+ + P ++++ G Y ++ +++ + +R Sbjct: 65 EASALRKIGAVLVV-SGCLSERYAKELKKEIPEIDIITGVGDYDKIDVMVKELKSLQSQR 123 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 V + + ER+ I+ ++ A++ + EGC++ C+FC +P +G SR+L Sbjct: 124 V----FLATESNERV-IIGSSFH------AYIKLSEGCNQSCSFCAIPSFKGKLHSRTLD 172 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 + E + L + G + + + Q+ +++ + L G+K +L+ ++ ++ + R Sbjct: 173 STIKELQSLYERGFRDFSFIAQDSSSYL-RDL-GQKDGLIELIKAIDNLQLPISCRILYL 230 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P + LI+ + +PY +P+Q +D +LK M R ++ ++++ +R + P Sbjct: 231 YPTTTTLELIETIANSTCFLPYFDMPIQHIADSMLKLMRRGANRAKHIELLESMRKI-PK 289 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 I + F++G PGE + +FR D V+ + + F YSP++GT +M + V Sbjct: 290 SFIRTSFVIGHPGEGEKEFRELHDFVEGFNFDRINLFAYSPQVGTFAYDMPQSVSVKTTN 349 Query: 389 ERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ER+ L + ++ Q + + A +GQ + + E Sbjct: 350 ERINKLNRIVKSQFKAHSKALLGQEVIAICE 380 >gi|195952540|ref|YP_002120830.1| MiaB-like tRNA modifying enzyme YliG [Hydrogenobaculum sp. Y04AAS1] gi|238066317|sp|B4U6U1|RIMO_HYDS0 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|195932152|gb|ACG56852.1| MiaB-like tRNA modifying enzyme YliG [Hydrogenobaculum sp. Y04AAS1] Length = 401 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 117/433 (27%), Positives = 200/433 (46%), Gaps = 69/433 (15%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRNLK 91 GC N+ DS + F E ++S AD +V+NTC E+A E + L I Sbjct: 9 GCPKNLVDSENIMGFF---KKENISSYHRADTVVINTCGFIEQAKRESIEEILKAI---- 61 Query: 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD 151 G V V GC+ EE+ + P A F + + D Sbjct: 62 ------GDGKKVFVTGCLVYRYKEELQKEIP-------------------EAVFFENIKD 96 Query: 152 TDYSVEDKFERLSIVDGGYNRKRGVT----AFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 L ++ KR +T A+L I EGC++ C+FC +P RG S+S+ Sbjct: 97 -----------LEGIELLQTPKRQLTTKHYAYLKIAEGCNRKCSFCAIPNIRGHHRSKSI 145 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL----VRL 263 ++V+EA L + GV E+ ++ Q+ ++ E +F ++ L ++ L +RL Sbjct: 146 EELVEEAIYLKEKGVKELIIVSQDTLYYQ------EDNSFKSIIKLLDALEKLDFPWIRL 199 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y +P +S I + ++PY +P+Q SD ILKSM R +T + +++++I Sbjct: 200 MYL--YPNSISKDFIDYIDNSKSVLPYFDIPLQHISDNILKSMRRGYTKKDVFRLLEQIN 257 Query: 324 SVRPDIAI-SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 +++ I S FIVG+P E + DF +D + + + F+YS GT +++ Sbjct: 258 AMKHKKPILRSSFIVGYPTEEERDFEELLDFISQELFHFVGVFEYSHEEGTYAYQFDDKI 317 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 + K R + L +++ E++ N A VGQ I++LIEK K++ + ++P + +V Sbjct: 318 PKEEKQRRYKEVFNLSQEILEEK---NSALVGQEIDILIEK--KDRARAFFQAPEIDGIV 372 Query: 440 LNSKNHNIGDIIK 452 K+ IIK Sbjct: 373 FLEKSSPKTGIIK 385 >gi|223944159|gb|ACN26163.1| unknown [Zea mays] Length = 517 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 103/373 (27%), Positives = 179/373 (47%), Gaps = 25/373 (6%) Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFER 162 +VVAGCV Q G + L+ ++++ G Q R+ E++E G V + Sbjct: 15 LVVAGCVPQ--GSQGLKELEGISII-GVQQIDRVVEVVEETLKGHEVRLLSR------KT 65 Query: 163 LSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGV 222 L +D RK L I GC CT+C + RG S ++ +VD + ++ GV Sbjct: 66 LPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTVVSEGV 125 Query: 223 CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282 EI L ++ A+ G+ + + + + + LR ++P + + L + Sbjct: 126 REIWLSSEDTGAY-GRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLKEIAA 184 Query: 283 DL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340 L + +LH+PVQSGSD +LK+MNR +T E+R+++D + + P + I++D I GFP Sbjct: 185 VLCHPCVYSFLHVPVQSGSDSVLKAMNREYTVGEFRKVVDTLCELVPGMQIATDIICGFP 244 Query: 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400 GETD+DF T++LV + + Q ++ PR GTP + M + VK K+ RE Sbjct: 245 GETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVPSNEVK--------KRSRE 296 Query: 401 QQVSFND-----ACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455 F G++ ++ I + + LVG + V++ + + +G +I Sbjct: 297 LTSVFESFSPYQGMEGKVEKIWITEIASDGVHLVGHTKGYIQVLVTAPDSMLGTSADAKI 356 Query: 456 TDVKISTLYGELV 468 T V +++G +V Sbjct: 357 TSVGRWSVFGVVV 369 >gi|313220891|emb|CBY31727.1| unnamed protein product [Oikopleura dioica] Length = 1590 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 106/406 (26%), Positives = 181/406 (44%), Gaps = 90/406 (22%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-----DLIVLNTCHIREKAAEK 79 Q+ +V+++GC N DS M GY+ +DDA DL +LN+C ++ A + Sbjct: 51 QKIYVRTWGCTHNTSDSEYMAGQLAEAGYDV--KLDDAKRLECDLWLLNSCTVKAPAEDH 108 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-----VGPQTYY 134 + + + ++ VVVAGCV Q +P V +G Q Sbjct: 109 FKNAINAAHKV---------NIPVVVAGCVPQG--------APSDKFVKGLSTIGVQQID 151 Query: 135 RLPELLE-------------RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLT 181 R+ E++E + R GKR+ D + K R ++++ ++ Sbjct: 152 RVVEVVEETLKGNTVKLLGPKKRAGKRIGGADLGL-PKVRRNALIE-----------IIS 199 Query: 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL 240 I GC CT+C + RG S + ++V + + G+ E+ L ++ A+ R G Sbjct: 200 INTGCLNSCTYCKTKHARGDLASYPIDEIVARFEQAFEQGIVEVWLTSEDTGAYGRDIGT 259 Query: 241 D------------GEKCTF----SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284 + E C ++ Y L ++G+ ++ +HPR Sbjct: 260 NIVELLNAVVKTIPEGCMMRIGMTNPPYILEHLEGIAKI---LNHPR------------- 303 Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344 + +LH+PVQSGSD +L SM R + ++ +++D +R+ PD I++D I GFP ET+ Sbjct: 304 --VYSFLHVPVQSGSDAVLNSMRREYNREDFCKVVDTLRANVPDCNIATDIIAGFPTETE 361 Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 +DF T+ L +K + F ++ PR GTP + EQ+ V ER Sbjct: 362 EDFDETISLCEKYKFPSLFMNQFFPRPGTPAAKW-EQIPRQVIKER 406 >gi|313681436|ref|YP_004059174.1| SSU ribosomal protein s12p methylthiotransferase [Sulfuricurvum kujiense DSM 16994] gi|313154296|gb|ADR32974.1| SSU ribosomal protein S12P methylthiotransferase [Sulfuricurvum kujiense DSM 16994] Length = 438 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 107/408 (26%), Positives = 191/408 (46%), Gaps = 33/408 (8%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ + S GC N+ D+ M + +E ++ +AD+I++NTC + A ++ Sbjct: 1 MSKKLHIVSLGCTKNLVDTEVMLGRL--KDFEMTDASGEADVIIVNTCGFIDAAKQES-- 56 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-- 140 L I NL R K D ++V+AGC+++ EE+ + V++ G Y ++ ELL Sbjct: 57 -LNTIFNLDAGRKK---DSVLVMAGCLSERYKEELSKELSEVDIFTGVGDYDKIDELLAA 112 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYT 198 +++RF V ++DG G T A++ + EGC++ C+FC +P Sbjct: 113 KQSRFTPEVY--------------LIDGAERVVTGSTYHAYIKLSEGCNQQCSFCAIPSF 158 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCTFSDLLYSLSE 256 +G SR+L + E L+ G + + + Q+ +++ R + + DG L+ + Sbjct: 159 KGKLNSRNLESIAHEVETLVAKGYYDFSFVSQDSSSYLRDQNIQDG----LIHLIKRIEL 214 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 I G+ R +P S LIKA GD V Y +P+Q +D +LK M R + Sbjct: 215 IDGVKSARILYLYPSTTSLKLIKAIGDSKVFHNYFDMPIQHINDEMLKIMKRGFGKAKTL 274 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 +++ ++++ P+ I + FIVG P ET+ F + G+ + F YS GT Sbjct: 275 ELLGAMKAL-PNAFIRTSFIVGHPQETEAMFEEMAEFSATFGFDRLNVFSYSDEEGTSAY 333 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE 424 M E++ R L K + ++S VG I ++I+ E Sbjct: 334 TMEEKIPSKTINARAKKLGKIASDVELSSLQKLVGTEITLVIDGESDE 381 >gi|325279490|ref|YP_004252032.1| Ribosomal protein S12 methylthiotransferase rimO [Odoribacter splanchnicus DSM 20712] gi|324311299|gb|ADY31852.1| Ribosomal protein S12 methylthiotransferase rimO [Odoribacter splanchnicus DSM 20712] Length = 456 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 116/450 (25%), Positives = 214/450 (47%), Gaps = 42/450 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTC-HIREKAAEKVYSFLGRI 87 S GC N+ D+ + GY+ ++ DA+++++NTC I + E V + L ++ Sbjct: 32 SLGCSKNLVDTEMLLKQLDQAGYDTETDVENSDAEVVIVNTCGFIGDAKEESVNTILEQV 91 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARF 145 R KEG V V GC++Q G E+ P V+ G + +LER F Sbjct: 92 -----ERKKEGIVEQVYVIGCLSQRYGAELQEEIPEVDAFFGK---FDWKGVLERMGEHF 143 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +R+ + +R+ Y A+L I EGC++ C++C +P G SR Sbjct: 144 DERI---------RNQRVLTTPDHY-------AYLKISEGCNRTCSYCAIPIMTGKHKSR 187 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 ++++E R L+ GV EI ++ Q++ + G L G K ++L+ +++I+GL ++ Sbjct: 188 DFEELLEECRALVKGGVKEILVVAQDLTYY-GIDLYG-KNRLAELIGRIADIEGLEWIKL 245 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 ++P L+ + + YL + +Q SD +L+ M R + + ++I +IR Sbjct: 246 HYAYPAGFPLELLTVMRERPNVCKYLDIALQHCSDHMLQQMRRGISKKQTIELIRKIRQE 305 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP-GSNMLEQVDE 384 P I I + + G PGET +DF + V ++ + + F YS T + + V E Sbjct: 306 VPGIFIRTTLMTGHPGETAEDFEELCEFVREMRFERLGVFPYSHEDDTWCDRHYQDDVPE 365 Query: 385 NVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVV 439 +K E R++ +Q + E+ + +GQ+++VLI++ +E G+ SP + V Sbjct: 366 EIKRERAGRIMQIQAGIAEE---IGRSQIGQVVKVLIDRQEEEYYVGRTEHDSPEVDPEV 422 Query: 440 L--NSKNHNIGDIIKVRITDVKISTLYGEL 467 L + +G+ ++ IT L+ E+ Sbjct: 423 LIPGERTLQVGEFYRMVITGADEYDLFAEI 452 >gi|210612680|ref|ZP_03289428.1| hypothetical protein CLONEX_01630 [Clostridium nexile DSM 1787] gi|210151482|gb|EEA82490.1| hypothetical protein CLONEX_01630 [Clostridium nexile DSM 1787] Length = 262 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 127/231 (54%), Gaps = 13/231 (5%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 V QI D+ P F V ++GCQMN DS ++ + GY D AD ++ NTC +R Sbjct: 36 VKQISDELQRPLTFCVTTFGCQMNARDSEKLVGVLEQIGYVEEPDEDKADFVIYNTCTVR 95 Query: 74 EKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRS-PIVNVVVGPQ 131 E A +VY LG+++++K K +++ + GC+ Q E E L++S V+++ G Sbjct: 96 ENANMRVYGRLGQLKHVK----KSNPHMMIGLCGCMMQEPEVVEKLKKSYRFVDLIFGTH 151 Query: 132 TYYRLPELLE-RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFC 190 Y+ EL+ R G+ V+D + DK + D RK + + I GC+ FC Sbjct: 152 NIYKFAELIATRFESGRMVIDI-WKDTDKI----VEDLPSERKFSFKSGVNIMFGCNNFC 206 Query: 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD 241 ++C+VPY RG E SR+ ++ E L+ +GV E+ LLGQNVN++ GK LD Sbjct: 207 SYCIVPYVRGRERSRNPKDIIREIEALVADGVMEVMLLGQNVNSY-GKNLD 256 >gi|322434670|ref|YP_004216882.1| MiaB-like tRNA modifying enzyme YliG [Acidobacterium sp. MP5ACTX9] gi|321162397|gb|ADW68102.1| MiaB-like tRNA modifying enzyme YliG [Acidobacterium sp. MP5ACTX9] Length = 581 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 134/253 (52%), Gaps = 8/253 (3%) Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 +A++ I EGCD C+FC++P RG SR + ++ EA+ LI GV EITL+GQ+ + Sbjct: 278 ASAYIKIAEGCDHPCSFCIIPQLRGKFRSRRMGSIIAEAQNLIAQGVREITLIGQDTTCY 337 Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295 G+ L G K + LL L+ + GL LR+ ++P ++ L++ D + YL +P+ Sbjct: 338 -GEDL-GLKEGLAQLLDGLAVLPGLRWLRFLYTYPNKVTTRLLETMARHDTISKYLDVPL 395 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355 Q S +LK+M R A + +I + R + P I I + FIVGFPGET+ D++ D V Sbjct: 396 QHASPNVLKTMKRGGNAQIFLNLIAKARQIVPGIVIRTSFIVGFPGETEADYKLLEDFVK 455 Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR--EQQVSFND--ACVG 411 F YS G + + D V + ++KL +Q++S + VG Sbjct: 456 AARIDWLGVFTYSDEEGAKAFELPD--DTKVPNRTIQARRRKLMKLQQKISTTEKLKWVG 513 Query: 412 QIIEVLIEKHGKE 424 + I++L+E +E Sbjct: 514 REIDLLVEGPSEE 526 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 11/123 (8%) Query: 13 MVSQIVDQCIV----PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN 68 M S ++D I P+ FV S GC N+ DS M + G E +DA++IV+N Sbjct: 1 MPSAVLDPAISAPSKPKVGFV-SLGCPKNLVDSEVMMGLLHHNGAELTPRAEDAEIIVIN 59 Query: 69 TCHIREKAA-EKVYSFLGRIRNLKNSRIKEGGDLL-VVVAGCVAQAEGEEILRRSPIVNV 126 TC + A E V + L +++ + K GG ++VAGC+ + +EI + P V+ Sbjct: 60 TCSFIDSAKQESVNTILEMVQH----KQKNGGKAQRIIVAGCLVERYRDEIQKNIPEVDA 115 Query: 127 VVG 129 VVG Sbjct: 116 VVG 118 >gi|300122464|emb|CBK23034.2| unnamed protein product [Blastocystis hominis] Length = 465 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 114/435 (26%), Positives = 198/435 (45%), Gaps = 25/435 (5%) Query: 28 FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 +V ++GC N+ D M+ + GY + ++AD+ V+NTC +R+K+ + SF Sbjct: 39 YVHTFGCSHNISDGETMKGVLAQGGYNITSKKEEADVWVINTCTVRDKS---IQSF---- 91 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 R L N K G L VVAGC+ +A+ L + +G + ++ E ++ F Sbjct: 92 RTLYNEAKKTGKKL--VVAGCMLEADPS--LSSEFHADATLGVRQIAQIKETVDSLFFPP 147 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 T + V E S+ + GV + I GC CTFC RG S + Sbjct: 148 ----THHFVSPSDEIPSLQLPKIRKDEGV-EIIPISLGCLGACTFCQTRLARGKLWSYPI 202 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK-GLVRLRYT 266 +++ NG+ EI L ++ A+ G+D L SE++ V ++ Sbjct: 203 DEIIKRVHAAKVNGISEIWLTSEDTGAY---GMDRNSSLMELLDRIRSEVEDSNVMVKIG 259 Query: 267 TSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 ++P + L L+ YLH+PVQSGSD +LK MNR++ ++R+I + Sbjct: 260 MTNPPFLKPMLEPLSTILNHKNFYSYLHIPVQSGSDAVLKRMNRKYQVSDFREICSFLSQ 319 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P I +S+D IVGFP E+ +D TM L+ + +Y PR T + EQ+ Sbjct: 320 HVPGITLSTDIIVGFPYESAEDHAKTMQLLRDLNLNIVHYSRYYPRPHTLAAR-YEQLPI 378 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKN 444 +V R+ L + + D VG+ ++V + + + + ++++SK Sbjct: 379 DVVKSRVKELSDWFK--ALHPYDELVGKEMDVWVSNEKTGDYRCCHTKNYTKVLIVDSKE 436 Query: 445 HNIGDIIKVRITDVK 459 GD+++V+ + + Sbjct: 437 FAAGDVVRVKCVEAQ 451 >gi|333030363|ref|ZP_08458424.1| Ribosomal protein S12 methylthiotransferase rimO [Bacteroides coprosuis DSM 18011] gi|332740960|gb|EGJ71442.1| Ribosomal protein S12 methylthiotransferase rimO [Bacteroides coprosuis DSM 18011] Length = 431 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 120/450 (26%), Positives = 205/450 (45%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGY--ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS ++ + GY E D+ V+NTC A E+ + + Sbjct: 9 TLGCSKNLVDSEQLIRQLEASGYHVEHDPEEPQGDIAVINTCGFIGDAKEESINMI---- 64 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE G L + V GC+++ +E+ P V+ G + L A GK Sbjct: 65 -LEFAQAKEEGVLDKLFVMGCLSERYLKELQIEIPQVDKFYGKFDWKGL-----LADLGK 118 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 +Y + ER Y A+L I EGCD+ C++C +P G +SR + Sbjct: 119 -----NYDPKLHLERSLTTPDHY-------AYLKISEGCDRTCSYCAIPIITGKHVSRPM 166 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 ++DE + L+ GV E ++ Q + + G+D +K +L+ ++ I G+ +R Sbjct: 167 EDILDEVKLLVGQGVREFQVIAQELTYY---GVDLYKKQRLPELIERMAAIPGVEWIRLH 223 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L++ + D + YL + +Q SD +L M R T + ++I R+R+ Sbjct: 224 YAYPAHFPYDLLRVMRENDNVCKYLDIALQHISDNMLSKMRRNVTKADTLEMIRRMRAEV 283 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDEN 385 P I I + +VG PGET+ DF D V ++ + + +F YS GT N +++ ++ Sbjct: 284 PGIHIRTTLMVGHPGETEQDFEELKDFVREVKFDRMGAFAYSEEEGTFSAKNYEDEISDD 343 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440 VK RL L + VG V+I++ E +GR SP + VL Sbjct: 344 VKQARLSELMDIQQSVSAEVAQRKVGTEQRVIIDR--IEGEYFIGRTQYDSPEVDPEVLI 401 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ IG V+I+ LYG+L+ Sbjct: 402 KDEGQDIEIGYFYDVKISGSDDFDLYGDLI 431 >gi|303286521|ref|XP_003062550.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456067|gb|EEH53369.1| predicted protein [Micromonas pusilla CCMP1545] Length = 542 Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 111/378 (29%), Positives = 174/378 (46%), Gaps = 39/378 (10%) Query: 22 IVPQR--FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 IVP R V+++GC N+ DS M + GY S +DADL V+NTC ++ + Sbjct: 107 IVPGRAKVHVRTFGCSHNISDSEFMAGQLSAYGYTLTTSPEDADLWVVNTCTVKNPSQSA 166 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 + + + R K G LV+ AGCV Q G++ R + ++ G R+ E Sbjct: 167 MNTVI--------ERGKAAGKKLVI-AGCVPQ--GDKNARELDDLTLL-GVTQIDRVVEA 214 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 +ER G D + K L +D R+ + + GC CT+C + R Sbjct: 215 VERTLAG----DAVRMLAKKT--LPALDLPKIRRNEHVEIVPLSTGCLGKCTYCKTKHAR 268 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCT--FSDLLYSLSE 256 G S + +V + I GV EI L ++ A+ G+D G T D+ +L + Sbjct: 269 GELGSYAPEALVARVQTAIAEGVTEIWLSSEDTGAY---GIDLGTDVTRLLRDVTAALPK 325 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-------LMPYLHLPVQSGSDRILKSMNRR 309 G LR ++P I AH D + +LH+PVQ+GSD +L M R Sbjct: 326 -DGSCMLRLGMTNPP-----YILAHLDAVAEAMHHPGVYAFLHIPVQAGSDAVLGRMKRE 379 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + ++ +++D + P I I++D I GFPGET++D+ TM L K + + ++ P Sbjct: 380 YVVADFEKVVDTLLERVPGITIATDIICGFPGETEEDWEMTMALCRKYDFIELHLSQFYP 439 Query: 370 RLGTPGSNMLEQVDENVK 387 R GTP + M + VK Sbjct: 440 RPGTPAARMKKVNSREVK 457 >gi|117928706|ref|YP_873257.1| MiaB-like tRNA modifying enzyme YliG [Acidothermus cellulolyticus 11B] gi|238065272|sp|A0LV11|RIMO_ACIC1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|117649169|gb|ABK53271.1| SSU ribosomal protein S12P methylthiotransferase [Acidothermus cellulolyticus 11B] Length = 475 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 114/411 (27%), Positives = 172/411 (41%), Gaps = 42/411 (10%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC N D+ + G+ R+ AD+ V+NTC E A ++ L + Sbjct: 13 GCARNDVDAEELAARLVDAGW-RLTEAPSADVTVVNTCGFIEAAKQESIDTLLEAAD--- 68 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 G VV GC+A+ G + P ++ Y + + LE G+ Sbjct: 69 ------GSTRVVAVGCLAERYGAALADAMPEATILSF-DDYPVIAQRLEDVLAGRPPAPH 121 Query: 153 DYSVEDKFERLSIVD--------------GGYNRKR-----GVTAFLTIQEGCDKFCTFC 193 L+ VD GG R A L I GCD+ CTFC Sbjct: 122 TPRDRRTLLPLTPVDRPRAAAEVGIPGHLGGPRVLRHRLDDSPVAPLKIASGCDRRCTFC 181 Query: 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 +P RG +SR + ++ EA+ L D+G EI L+ +N ++ GK L G+ LL + Sbjct: 182 AIPSFRGAFVSRPPADILREAQWLADHGAREIVLVSENSTSY-GKDL-GDPFALEKLLAA 239 Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 + GLVR+R T P ++ LI + PY L Q S R+L+ M R + Sbjct: 240 FGGVDGLVRVRVTYLQPAEVRPALIDVIATAPHVAPYFDLSFQHASPRVLRRMRRFGGSE 299 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL-----VDKIGYAQAFSFKYS 368 E+ ++ IR P A+ S+ IVGFPGET++D + +D IG F YS Sbjct: 300 EFLNLLAEIRRRNPRAAVRSNVIVGFPGETEEDVAELGEFLRAARLDGIGV-----FGYS 354 Query: 369 PRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 GT S E++ E R+ + E A +G+ ++VLI+ Sbjct: 355 DEDGTEASGFPEKIPEQEIRSRVDDIAGIAEEVTADRARARLGETVDVLID 405 >gi|284030926|ref|YP_003380857.1| MiaB-like tRNA modifying enzyme YliG [Kribbella flavida DSM 17836] gi|283810219|gb|ADB32058.1| MiaB-like tRNA modifying enzyme YliG [Kribbella flavida DSM 17836] Length = 544 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234 G A L + GCD+ C FC +P RG +SR ++V+ EA+ L ++GV E+ L+ +N + Sbjct: 232 GPMAPLKLASGCDRRCAFCAIPAFRGAFVSRRPTEVLGEAQWLAEHGVREVFLVSENSTS 291 Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 + GK L G+ L+ ++ + GL R+R + P +M LI A ++PY L Sbjct: 292 Y-GKDL-GDLRLLETLVGEIAAVPGLTRVRVSYLQPAEMRPTLITAMTSTPGVVPYFDLS 349 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 Q S +L+ M R A + ++I+++R P I S+ IVGFPGET+ D D + Sbjct: 350 FQHASGPLLRRMRRFGDAERFLELIEQVRGQAPTAGIRSNVIVGFPGETEQDVDILCDFL 409 Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414 + G F YS GT ++DE+ A RL + + + + +A +G+ + Sbjct: 410 SRAGLDAIGVFGYSDEDGTEAETYDGKLDEDTIAARLDRVTRLAEDLTSARAEARIGETV 469 Query: 415 EVLIEK 420 EVL+E Sbjct: 470 EVLVES 475 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 6/111 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC N DS + + G+ V DAD +V+NTC E A + L L Sbjct: 24 TLGCARNDVDSEELAGRLEAGGFRLVEDAADADTVVVNTCGFVEAAKKDSVDTL-----L 78 Query: 91 KNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 S K+ G VVA GC+A+ GE++ P + V+G Y + + L Sbjct: 79 AASDYKDSGRTQAVVAVGCLAERYGEQLAEALPETDAVLGFDDYADISDKL 129 >gi|323509405|dbj|BAJ77595.1| cgd6_1520 [Cryptosporidium parvum] Length = 493 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 102/366 (27%), Positives = 178/366 (48%), Gaps = 31/366 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + VK++GC N DS M + GY V +D+ +LIV+N+C ++ + + + + Sbjct: 103 KIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSCQNLI- 161 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELLERAR 144 L S+ K VVV GCV QA+ + + + +V ++G + +R+ E++E Sbjct: 162 ---ELAKSKRK-----FVVVTGCVPQAD----INLNFLKDVSIIGVRNIHRIVEVVELTL 209 Query: 145 FGKRVVDTDYSVEDK----FERLSIVDGGYN----RKRGVTAFLTIQEGCDKFCTFCVVP 196 G V+ +E K + L I + R+ +TI GC CT+C Sbjct: 210 QGNIVLLIPDKMEGKSGQLIDSLEISLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTK 269 Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 ++RG S + ++ + ++ GV + L +++ A+ GK + S+LL + + Sbjct: 270 HSRGDLGSYPVETIIQRINQSLNEGVKQFWLTSEDIGAY-GKDIG---TNLSELLREILK 325 Query: 257 IKGL-VRLRYTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 I + +R ++P D D +I +V +LH+PVQSGS+RIL M R + Sbjct: 326 ILPQDIMIRIGMTNPPYILDQIDEIIDIMKHPNVF-EFLHIPVQSGSNRILDLMKRDYVI 384 Query: 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 E+ ++D I P I++D I GFPGE+D D +++L++K + K+ PR G Sbjct: 385 EEFSLLVDSILKEIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPG 444 Query: 373 TPGSNM 378 TP + M Sbjct: 445 TPAAKM 450 >gi|118475302|ref|YP_892512.1| hypothetical protein CFF8240_1371 [Campylobacter fetus subsp. fetus 82-40] gi|238065315|sp|A0RQM9|RIMO_CAMFF RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|118414528|gb|ABK82948.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus 82-40] Length = 436 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 110/457 (24%), Positives = 214/457 (46%), Gaps = 35/457 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 +P + V S GC N+ DS M S Y V+ ++AD++++NTC E A E+ Sbjct: 1 MPNLYLV-SLGCNKNLVDSEIMLGRLSS--YNIVDKPNNADVMIVNTCGFIESAKEESVR 57 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 + + + K KE ++VV GC+ Q +E+++ P V++ G Y + E++ + Sbjct: 58 TILELASYK----KENS--VLVVTGCLMQRYRDELMKELPEVDIFTGVGDYASIDEMILK 111 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + ++ + I Y+ A++ I EGC++ C+FC +P +G Sbjct: 112 KQ---NLFSPGVYLQKSDTKRVITGSSYH------AYIKIAEGCNQKCSFCAIPTFKGKL 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCTFSDLLYSLSEIKGL 260 SR ++ ++ E ++L +G + + + Q+ +++ R G+ DG L+ + +I+ + Sbjct: 163 KSRDINSIIKEVKELTKDGYSDFSFIAQDTSSFLRDAGINDG----LIKLIDEVEKIEAV 218 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R +P S LI + Y +P+Q +D +LK M R + ++++ Sbjct: 219 KSARILYLYPTTASMGLIDKIIASPKFVNYFDMPIQHINDDMLKIMRRGSSKERLKELLT 278 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 ++R V P + + I+G PGET + F D + + + + +F YS GT M E Sbjct: 279 KMR-VAPKSFLRTGIIIGHPGETGERFDELCDFLTEFKFDRISAFAYSKEEGTLAYEM-E 336 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSP--WLQ-- 436 Q+ +RL ++K +++Q + VG++I+V I E G W + Sbjct: 337 QIPSKTITKRLNTIEKIIKKQIEGSFKSLVGEVIKVQINGSSSEGEMFFGAKSIIWDREI 396 Query: 437 --SVVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468 +++N K+ +G+I +I + L GE++ Sbjct: 397 DGEILINDTQIKDPKVGEIYDCKINEFVKDKLIGEII 433 >gi|223937022|ref|ZP_03628930.1| MiaB-like tRNA modifying enzyme YliG [bacterium Ellin514] gi|223894303|gb|EEF60756.1| MiaB-like tRNA modifying enzyme YliG [bacterium Ellin514] Length = 556 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 157/315 (49%), Gaps = 39/315 (12%) Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-- 235 A++ I EGC+ C+FC++P RG SR + +V EA++LI +GV E+ L+ Q+ + Sbjct: 215 AYVKIAEGCNHPCSFCIIPRMRGSHRSRVQADIVREAKQLIADGVKELNLISQDSTYYGL 274 Query: 236 ------------------RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL 277 K L + T LL L+ I G +R +HP +D L Sbjct: 275 DLRPNHSRNIASPEKFNSAAKSLPADATTLCTLLRELNAIPGDFWIRLLYTHPAHWTDEL 334 Query: 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY-RQIIDRIRSVRPDIAISSDFI 336 I+ + Y+ +P+Q + +L+ M RR T+ +Y +I RIR+ P IAI + FI Sbjct: 335 IQTIAKCKKVARYVDMPLQHIHENMLERM-RRETSEQYIVNLIQRIRAGIPGIAIRTTFI 393 Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL-LCLQ 395 VGFPGET+ F+ ++ + + + F YS GT NM Q+ + +K++R L + Sbjct: 394 VGFPGETETYFKTLLNFIRDTKFERLGVFTYSKEDGTRAGNMEGQLADKIKSKRRELAMA 453 Query: 396 KKLR-EQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVR 454 ++L+ +QV+ ++ VG+ + VL+E K L++ ++S H + +R Sbjct: 454 EQLKVAKQVA--ESFVGKELRVLVEAEASAKE--------LKNAKISSWEHGL-----IR 498 Query: 455 ITDVKISTLYGELVV 469 D ++ L G +V Sbjct: 499 GEDKQLGQLKGRYLV 513 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P R + S GC N+ D+ M G E N AD++++NTC + A E+ Sbjct: 10 PVRVGLISLGCAKNLVDAEIMLGSLMKGGVEITNDATQADVVIVNTCSFIDSAQEESVDT 69 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + + ++ + + G ++V+GC+ Q EE+ + P V+V +G ++ E++ +A Sbjct: 70 ILQSEEVREANNRGQG---LIVSGCLPQRFREELPKLLPEVDVFMGIDQVAQVTEIVHKA 126 >gi|218131133|ref|ZP_03459937.1| hypothetical protein BACEGG_02738 [Bacteroides eggerthii DSM 20697] gi|217986653|gb|EEC52987.1| hypothetical protein BACEGG_02738 [Bacteroides eggerthii DSM 20697] Length = 432 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 116/450 (25%), Positives = 204/450 (45%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS + G+ + + + V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEHLMRQLEEAGFCVTHDAERPKGQIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE G+L + V GC+++ +E+ P V+ G + L + L +A Sbjct: 66 -LEFAQAKEEGNLEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGKA---- 120 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER Y A+L I EGCD+ C++C +P G ISR + Sbjct: 121 ------YHEELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHISRPI 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE R L+ GV E ++ Q + + G+D +K +L+ +S++ G+ +R Sbjct: 168 EEILDEVRYLVARGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISDVPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + + Y+ + +Q SD +L M R T E ++I++ R Sbjct: 225 YAYPAHFPMDLFRVMRERSNVCKYMDIALQHISDNMLDKMRRHVTKEETYRLIEKFREEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-VDEN 385 P I + + +VG PGET+ DF + V K+ + + +F YS GT + E V Sbjct: 285 PGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAHYEDAVPPE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440 VK RL L + + VG+ ++V+I++ +E VGR SP + VL Sbjct: 345 VKQARLDELMSIQQGISAELSAGKVGKRMKVIIDR--REGDYYVGRTEFDSPEVDPEVLI 402 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG+ +V I + L+G ++ Sbjct: 403 ECGDASLEIGNFYQVEIINSDDFDLFGRII 432 >gi|145593944|ref|YP_001158241.1| MiaB-like tRNA modifying enzyme YliG [Salinispora tropica CNB-440] gi|238066595|sp|A4X4R3|RIMO_SALTO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|145303281|gb|ABP53863.1| MiaB-like tRNA modifying enzyme YliG [Salinispora tropica CNB-440] Length = 507 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 117/471 (24%), Positives = 198/471 (42%), Gaps = 69/471 (14%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 MVS +R + + GC N DS + S G++ + AD++V+NTC Sbjct: 1 MVSATPPAPADGRRVALLTLGCARNEVDSEELAARLHSDGWQVTTDGEGADVVVVNTCGF 60 Query: 73 REKAAE-KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131 EKA + + + L VV AGC+A+ G E+ P V+ Sbjct: 61 VEKAKQDSIQTLLAAAETGAK----------VVAAGCMAERYGRELAESLPEAQAVLSFD 110 Query: 132 TYYRLPELLER--ARFGKRVVDTDYSVEDKFERLSIVD----------GGYN-------- 171 Y P++ +R A +D ++ D+ E L + G+ Sbjct: 111 DY---PDISDRLGAVLAGTAIDA-HTPRDRRELLPLTPVRRGEAAVSLPGHGTPAAVAQP 166 Query: 172 ---------------------RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 R+R G A L + GCD+ C FC +P RG +SR Sbjct: 167 GARSAPIEVDEHTPAHLRPVLRRRLDTGPVASLKLASGCDRRCAFCAIPAFRGAFVSRPP 226 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 ++ EA L GV E+ L+ +N +++ GK L G+ LL L+ + G+VR+R + Sbjct: 227 EALLAEAEWLARTGVRELVLVSENSSSY-GKDL-GDPRALEKLLPQLAAVDGIVRVRASY 284 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P + L++A + PY L Q S+ +L+ M R + + +++ IR++ P Sbjct: 285 LQPAETRPGLVEAIATTPGVAPYFDLSFQHSSEAVLRRMRRFGSTDRFLELLGSIRALSP 344 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV- 386 + S+FIVGFPGET D + +++ F YS GT + + +V Sbjct: 345 EAGARSNFIVGFPGETRADVAELVRFLEEARLDAIGVFDYSDEDGTEAAGLSGKVTTATV 404 Query: 387 --KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSP 433 + +RL L +L Q+ +G ++VL++ G +G+ ++P Sbjct: 405 KRRYDRLSALADELCAQRAEQR---LGSTVQVLVDSVDGGVVEGRAAHQAP 452 >gi|317476990|ref|ZP_07936232.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides eggerthii 1_2_48FAA] gi|316906783|gb|EFV28495.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides eggerthii 1_2_48FAA] Length = 432 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 116/450 (25%), Positives = 203/450 (45%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS + G+ + + + V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEHLMRQLEEAGFCVTHDAERPKGQIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE G+L + V GC+++ +E+ P V+ G + L + L +A Sbjct: 66 -LEFAQAKEEGNLEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGKA---- 120 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER Y A+L I EGCD+ C++C +P G ISR + Sbjct: 121 ------YHEEFHIERTLTTPTHY-------AYLKISEGCDRKCSYCAIPIITGRHISRPI 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE R L+ GV E ++ Q + + G+D +K +L+ +S++ G+ +R Sbjct: 168 EEILDEVRYLVTRGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISDVPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + + Y+ + +Q SD +L M R T E ++I+ R Sbjct: 225 YAYPAHFPMDLFRVMRERSNVCKYMDIALQHISDNMLDKMRRHVTKEETYRLIEEFREEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385 P I + + +VG PGET+ DF + V K+ + + +F YS GT + E V Sbjct: 285 PGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAHYEDSVPPE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440 VK RL L + + VG+ ++V+I++ +E VGR SP + VL Sbjct: 345 VKQARLDELMSIQQGISAELSAGKVGKRMKVIIDR--REGDYYVGRTEFDSPEVDPEVLI 402 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG+ +V I + L+G ++ Sbjct: 403 ECGDASLEIGNFYQVEIINSDDFDLFGRII 432 >gi|46199556|ref|YP_005223.1| hypothetical protein TTC1254 [Thermus thermophilus HB27] gi|55981587|ref|YP_144884.1| hypothetical protein TTHA1618 [Thermus thermophilus HB8] gi|46197182|gb|AAS81596.1| conserved hypothetical protein [Thermus thermophilus HB27] gi|55773000|dbj|BAD71441.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 436 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 123/447 (27%), Positives = 214/447 (47%), Gaps = 37/447 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVYSFL 84 R ++ GC++N ++ + + E V ADL+V+N+C + A + Sbjct: 2 RAAFRTLGCKVNQVETEALLGFLKALEPEVVPLEAGGADLVVINSCAVTTTAEADTRKEV 61 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 R R +VV GC A+ E+L+ + VV LP ++ R Sbjct: 62 RRARRYNP-------HAFIVVTGCYAEL-APEVLKEL-GADAVVPNARKAELPRVI-LER 111 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 FG + +D E + G R V AFL +Q+GC C +C++P RG E Sbjct: 112 FG---LPSDPITTPPNEFWGAGERGLLNSR-VRAFLKVQDGCQAGCAYCIIPRLRGKERH 167 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG--KGLDGEKCTFSDLLYSLSEIKGLVR 262 R + + EA L+ G+ EI L G + +++G +GL G + LY L + Sbjct: 168 RDHREALAEAEALLRMGIKEIVLTGVRLGSYKGHPRGLAG----LVEDLYHLG-----AK 218 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 +R ++ P D + L+K G + P+LHL +Q+GSDR+LK M RR+ YR+++ R Sbjct: 219 VRLSSIEPEDTGEDLLKVIGRYAPEVRPHLHLSLQTGSDRLLKLMGRRYDKAYYRELVQR 278 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 + P A+++D I G P ET+++ R T+ ++++ + +F Y+PR T ++M Q Sbjct: 279 AYDLIPGFALTTDVIAGLPTETEEEHRETLAFLEELRPTRVHAFTYTPRPKTRAASM-PQ 337 Query: 382 VDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 V V+ R L+ L ++L E+++ +G+ +EVL+E+ + G+ +G +P Sbjct: 338 VPPEVRKRRTKELIALAQRLAEERIRPR---LGERVEVLVER--VQGGEALGHTPDYYEA 392 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYG 465 L + G+ + R+ V+ L G Sbjct: 393 RLEGEARP-GETVWARVHGVEGYVLLG 418 >gi|15639261|ref|NP_218710.1| hypothetical protein TP0269 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025503|ref|YP_001933275.1| hypothetical protein TPASS_0269 [Treponema pallidum subsp. pallidum SS14] gi|6136505|sp|O83293|Y269_TREPA RecName: Full=Putative methylthiotransferase TP_0269 gi|3322542|gb|AAC65257.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018078|gb|ACD70696.1| hypothetical protein TPASS_0269 [Treponema pallidum subsp. pallidum SS14] gi|291059672|gb|ADD72407.1| hypothetical protein TPChic_0269 [Treponema pallidum subsp. pallidum str. Chicago] gi|308208122|gb|ADO20311.1| putative tRNA modification protein [Treponema pallidum subsp. pallidum] gi|313505246|gb|ADR64389.1| putative MiaB tRNA modification protein [Treponema pallidum subsp. pallidum str. Mexico A] Length = 482 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 117/219 (53%), Gaps = 6/219 (2%) Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237 A + +Q+GC+ C FC + + RG +S +V+ + L G+ E+ L G N++ +R Sbjct: 205 ASIKVQDGCNSGCAFCRIRFARGRAVSLETHEVIGRVQALEARGMSEVVLTGVNLSQYRS 264 Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297 +D F+ LL + + + +R ++ +P ++ ++A V P+ HL VQS Sbjct: 265 GSID-----FAGLLELIVQETHTIHIRISSLYPESVTSAFLRAIAHTRV-SPHFHLSVQS 318 Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 GSDR+L+ M R +T + Q + +RSVR + + D IVGFPGET++DF T + + Sbjct: 319 GSDRVLRRMRRAYTRADIYQAVSDLRSVREEPFLGCDIIVGFPGETEEDFADTQRMCKTL 378 Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396 +A F +S R GT M +V + + ER+ +Q+ Sbjct: 379 RFAGIHVFPFSARPGTEAFAMDAKVPQRIAGERVAAMQQ 417 >gi|153005211|ref|YP_001379536.1| RNA modification protein [Anaeromyxobacter sp. Fw109-5] gi|152028784|gb|ABS26552.1| RNA modification enzyme, MiaB family [Anaeromyxobacter sp. Fw109-5] Length = 450 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 125/237 (52%), Gaps = 9/237 (3%) Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR---KLIDNGVCEITLLGQNVNAW 235 FL IQ+GCD C++CVVP RG +RSL+ DEA L+ EI + G ++ A+ Sbjct: 155 FLKIQDGCDARCSYCVVPLARGP--ARSLA--FDEALGRLSLLGARHAEIVVAGVHLGAY 210 Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPV 295 G+ L + T +DL+ + RLR ++ P ++ L+ L P+LHLP+ Sbjct: 211 -GRDLSPRR-TLADLIRAAVGGGLRARLRLSSLEPLEVPLDLLDDPAVAPALCPHLHLPL 268 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355 QSGSDRIL +M R + A YR+ + P + + +D + GFPGETDDD RAT+ L++ Sbjct: 269 QSGSDRILAAMRRPYRADGYRRAALEGAARLPGLCLGADVVTGFPGETDDDHRATLSLIE 328 Query: 356 KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQ 412 + A F++SPR GT + + V V R L + +F D +G+ Sbjct: 329 ALPLAYLHVFRFSPRPGTEAAALPSAVPGAVARARAAELVALSERRWRAFLDGLLGK 385 >gi|270296681|ref|ZP_06202880.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. D20] gi|270272668|gb|EFA18531.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. D20] Length = 432 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 113/448 (25%), Positives = 205/448 (45%), Gaps = 35/448 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS + G+ + + + V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEHLMRQLEEVGFHVTHDAERPKGQIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE G+L + V GC+++ +E+ P V+ G + L + L +A Sbjct: 66 -LEFAQAKEEGNLEKLYVMGCLSERYLKELAVEIPQVDKFYGKFNWRELLQDLGKA---- 120 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER Y A+L I EGCD+ C++C +P G +SR + Sbjct: 121 ------YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE + L+ GV E ++ Q + + G+D +K +L+ +S+I G+ +R Sbjct: 168 EEILDEVKYLVARGVKEFQVIAQELTYY---GVDLYKKQMLPELVERISDIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + D + Y+ + +Q SD +L+ M R T E ++I++ R Sbjct: 225 YAYPAHFPTDLFRVMRERDNVCKYMDIALQHISDNMLQKMRRHVTKDETYKLIEQFREEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385 P I + + +VG PGET+ DF + V K+ + + +F YS GT + E + + Sbjct: 285 PGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAEYEDSIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL--- 440 VK RL L + + VG+ ++V+I++ E G+ SP + VL Sbjct: 345 VKQARLDELMSIQQGISGELSAEKVGRQMKVIIDRLEGEYYIGRTEFDSPEVDPEVLIER 404 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG+ V I + L+G ++ Sbjct: 405 GDRALHIGNFYHVEIVNSDDFDLFGRII 432 >gi|308208098|gb|ADO20291.1| putative tRNA modification protein [Treponema pallidum subsp. pertenue] gi|308208104|gb|ADO20296.1| putative tRNA modification protein [Treponema pallidum subsp. pertenue str. Gauthier] gi|308208110|gb|ADO20301.1| putative tRNA modification protein [Treponema pallidum subsp. pertenue] gi|308208116|gb|ADO20306.1| putative tRNA modification protein [Treponema pallidum] Length = 482 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 117/219 (53%), Gaps = 6/219 (2%) Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237 A + +Q+GC+ C FC + + RG +S +V+ + L G+ E+ L G N++ +R Sbjct: 205 ASIKVQDGCNSGCAFCRIRFARGRAVSLETHEVIGRVQALEARGMSEVVLTGVNLSQYRS 264 Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297 +D F+ LL + + + +R ++ +P ++ ++A V P+ HL VQS Sbjct: 265 GSID-----FAGLLELIVQETHTIHIRISSLYPESVTSAFLRAIAHTRV-SPHFHLSVQS 318 Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 GSDR+L+ M R +T + Q + +RSVR + + D IVGFPGET++DF T + + Sbjct: 319 GSDRVLRRMRRAYTRADIYQAVSDLRSVRGEPFLGCDIIVGFPGETEEDFADTQRMCKTL 378 Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396 +A F +S R GT M +V + + ER+ +Q+ Sbjct: 379 RFAGIHVFPFSARPGTEAFAMDAKVPQRIAGERVAAMQQ 417 >gi|317480049|ref|ZP_07939161.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 4_1_36] gi|316903791|gb|EFV25633.1| MiaB-like tRNA modifying enzyme YliG [Bacteroides sp. 4_1_36] Length = 432 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 113/448 (25%), Positives = 205/448 (45%), Gaps = 35/448 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS + G+ + + + V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEHLMRQLEEVGFHVTHDAERPKGQIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE G+L + V GC+++ +E+ P V+ G + L + L +A Sbjct: 66 -LEFAQAKEEGNLEKLYVMGCLSERYLKELAVEIPQVDKFYGKFNWRELLQDLGKA---- 120 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER Y A+L I EGCD+ C++C +P G +SR + Sbjct: 121 ------YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE + L+ GV E ++ Q + + G+D +K +L+ +S+I G+ +R Sbjct: 168 EEILDEVKYLVARGVKEFQVIAQELTYY---GVDLYKKQMLPELVERISDIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + D + Y+ + +Q SD +L+ M R T E ++I++ R Sbjct: 225 YAYPAHFPADLFRVMRERDNVCKYMDIALQHISDNMLQKMRRHVTKDETYKLIEQFREEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385 P I + + +VG PGET+ DF + V K+ + + +F YS GT + E + + Sbjct: 285 PGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAEYEDSIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL--- 440 VK RL L + + VG+ ++V+I++ E G+ SP + VL Sbjct: 345 VKQARLDELMSIQQGISGELSAEKVGRQMKVIIDRLEGEYYIGRTEFDSPEVDPEVLIER 404 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG+ V I + L+G ++ Sbjct: 405 GDRALHIGNFYHVEIVNSDDFDLFGRII 432 >gi|88603600|ref|YP_503778.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1] gi|88189062|gb|ABD42059.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1] Length = 428 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 111/445 (24%), Positives = 194/445 (43%), Gaps = 56/445 (12%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 ++++GC NV DS + + + G V+ + A+++++NTC + K+ Sbjct: 33 IRTFGCAYNVGDSDLLASVLTASGSVIVSDPELAEVMIINTCIVIASTERKMLK------ 86 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 I D V V GC+ A E + + + ++ P + +R + Sbjct: 87 -----EISSYPDHEVYVTGCLPLALPESLQEHTTVK--LIHPDSIHRAAATVS------- 132 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 Y++K G + + I GC C +C+ RG S S Sbjct: 133 ---------------------YDQK-GPVSVVQIGPGCVGSCRYCITRCARGSIRSNSPH 170 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 Q+ + G EI L GQ+++A+ G D + + + LL + + + R+R Sbjct: 171 QIYSHIASCVRGGAVEIRLAGQDLSAY---GHDTGQWSLATLLEGIPALPDITRIRLGMM 227 Query: 269 HPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + + ++ +LHLP+QSGSD +L M R +T + + IID R+ Sbjct: 228 NPATLKPIAQRVARTMNNGPFFSFLHLPIQSGSDHVLDLMGRGYTVADVQNIIDIFRAEM 287 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 DI I++D I GFPGETDDD T+ L+ +I +YS R GT G + ++ + + Sbjct: 288 SDITIATDIITGFPGETDDDHEETVRLIRRIAPGMVNVTRYSWRPGT-GMSRDHELPDRI 346 Query: 387 KAERLLCLQKKLREQQVSF---NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK 443 + ER + +RE F N+ G ++ V+ + K G ++ RS + VV+ + Sbjct: 347 RKERSRAI---IRESYTMFQKANEKMKGAVMRVIPTEQLK-PGSVMARSERYEGVVIREE 402 Query: 444 NHNIGDIIKVRITDVKISTLYGELV 468 +G V IT L GE++ Sbjct: 403 CQ-LGIPCMVTITGSTPHYLIGEVI 426 >gi|227872339|ref|ZP_03990693.1| tRNA 2-methylthioadenine synthetase [Oribacterium sinus F0268] gi|227841822|gb|EEJ52098.1| tRNA 2-methylthioadenine synthetase [Oribacterium sinus F0268] Length = 247 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/210 (35%), Positives = 116/210 (55%), Gaps = 20/210 (9%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GCQM+ D +++ + GY ++AD+I+ TC +RE A +K+Y +G++++L Sbjct: 50 GCQMSAKDGEKLQGILQEAGYSITEKEEEADVILFTTCTVRENANQKLYGRIGQLKHL-- 107 Query: 93 SRIKEGGDLLVVVAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + DL++ + GC+ Q E E I R+ P V+++ G Y+L E L + Sbjct: 108 --YQRNKDLIIGITGCMMQEKDEVETIQRKYPYVHLIFGTHNIYKLAEYL---------L 156 Query: 151 DTDYSVEDKFERLS----IVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +T S E K E L IV+ RK A + I GC+ FCT+C+VPY RG E SR Sbjct: 157 ETMLSKEKKVELLEDSAEIVENLPSKRKYSFRAAVNISFGCNNFCTYCIVPYVRGREKSR 216 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 + +++ E L+ +GV EI LLGQNVN++ Sbjct: 217 NSQEILKECEALVADGVKEIMLLGQNVNSY 246 >gi|48429440|gb|AAT42488.1| YleA [Escherichia coli B] Length = 168 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 66/167 (39%), Positives = 103/167 (61%), Gaps = 1/167 (0%) Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L M R HTA EY+ II ++R+ RPDI ISSDFIVGFPGET +DF TM L+ + + + Sbjct: 1 LNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMS 60 Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 +SF +S R GTP ++M++ V E K +RL LQ+++ +Q ++++ +G +L+E Sbjct: 61 YSFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTS 120 Query: 423 KEK-GKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ +L GR+ + V IG + V ITDV ++L G++V Sbjct: 121 RKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGKVV 167 >gi|160889557|ref|ZP_02070560.1| hypothetical protein BACUNI_01981 [Bacteroides uniformis ATCC 8492] gi|156861074|gb|EDO54505.1| hypothetical protein BACUNI_01981 [Bacteroides uniformis ATCC 8492] Length = 432 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 113/448 (25%), Positives = 204/448 (45%), Gaps = 35/448 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS + G+ + + + V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEHLMRQLEEVGFHVTHDAERPKGQIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE G+L + V GC+++ +E+ P V+ G + L + L +A Sbjct: 66 -LEFAQAKEEGNLEKLYVMGCLSERYLKELAVEIPQVDKFYGKFNWRELLQDLGKA---- 120 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER Y A+L I EGCD+ C++C +P G +SR + Sbjct: 121 ------YHDELHIERTLTTPKHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE + L+ GV E ++ Q + + G+D +K +L+ +S+I G+ +R Sbjct: 168 EEILDEVKYLVARGVKEFQVIAQELTYY---GVDLYKKQMLPELVERISDIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + D + Y+ + +Q SD +L+ M R T E ++I++ R Sbjct: 225 YAYPAHFPADLFRVMRERDNVCKYMDIALQHISDNMLQKMRRHVTKDETYKLIEQFREEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385 P I + + +VG PGET+ DF + V K+ + + +F YS GT + E + + Sbjct: 285 PGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAEYEDSIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSPWLQSVVL--- 440 VK RL L + + VG+ ++V+I++ E G+ SP + VL Sbjct: 345 VKQARLDELMSIQQGISGELSAEKVGRQMKVIIDRLEGEYYIGRTEFDSPEVDPEVLIER 404 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 + +IG+ V I L+G ++ Sbjct: 405 GDRALHIGNFYHVEIVKSDDFDLFGRII 432 >gi|253568256|ref|ZP_04845667.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251842329|gb|EES70409.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 306 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 86/300 (28%), Positives = 153/300 (51%), Gaps = 14/300 (4%) Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237 A+L I EGCD+ C++C +P G IS+S+ +++DE R L+ GV E ++ Q + + Sbjct: 8 AYLKISEGCDRKCSYCAIPIITGRHISKSMEEILDEVRYLVSQGVKEFQVIAQELTYY-- 65 Query: 238 KGLD-GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 G+D +K +L+ +SEI G+ +R ++P L + + D + Y+ + +Q Sbjct: 66 -GVDLYKKQMLPELIERISEIPGVEWIRLHYAYPAHFPTDLFRVMRERDNVCKYMDIALQ 124 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 SD +LK M R+ + + ++I++ R P I + + +VG PGET++DF + V K Sbjct: 125 HISDNMLKLMRRQVSKEDTYKLIEQFRKEVPGIHLRTTLMVGHPGETEEDFEELKEFVRK 184 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLE-QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415 + + +F YS GT + E + + VK RL L + + A +GQ ++ Sbjct: 185 ARFDRMGAFAYSEEEGTYAAQQYEDSIPQEVKQARLDELMDIQQGISAELSAAKIGQQMK 244 Query: 416 VLIEKHGKEKGKLVGR----SPWLQSVVLNS---KNHNIGDIIKVRITDVKISTLYGELV 468 V+I++ E +GR SP + VL S + +G +V +TD LY +++ Sbjct: 245 VIIDR--IEGDYYIGRTEFDSPEVDPEVLISVSREELEVGQFYQVEVTDADDFDLYAKIL 302 >gi|167763123|ref|ZP_02435250.1| hypothetical protein BACSTE_01492 [Bacteroides stercoris ATCC 43183] gi|167699463|gb|EDS16042.1| hypothetical protein BACSTE_01492 [Bacteroides stercoris ATCC 43183] Length = 432 Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 113/450 (25%), Positives = 204/450 (45%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS + G+ + + ++ V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEHLMRQLEEAGFHVTHDAERPKGEIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE G+L + V GC+++ +E+ P V+ G + L + L +A Sbjct: 66 -LEFAQAKEEGELEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGKA---- 120 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER Y A+L I EGCD+ C++C +P G +SR + Sbjct: 121 ------YHDELHIERTLTTPQHY-------AYLKISEGCDRKCSYCAIPIITGRHVSRPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE + L+ GV E ++ Q + + G+D ++ L+ +SEI G+ +R Sbjct: 168 EEILDEVKYLVARGVKEFQVIAQELTYY---GVDLYKRQMLPQLIEKISEIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + + Y+ + +Q SD +L+ M R T + ++I++ R Sbjct: 225 YAYPAHFPMDLFRVMRERPNVCKYMDIALQHISDNMLEKMRRHVTKEDTYRLIEKFREEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QVDEN 385 P I + + +VG PGET+ DF + V K+ + + +F YS GT + E + + Sbjct: 285 PGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEEGTYAAAHYEDSIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440 VK RL L + + A VG+ + V+I++ E +GR SP + VL Sbjct: 345 VKQARLDELMSIQQGISAELSAAKVGRQMRVIIDR--LEGDYYIGRTEFDSPEVDPEVLI 402 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG +V I + L+G ++ Sbjct: 403 ECGDEPLEIGGFYQVEIINSDDFDLFGRII 432 >gi|157146515|ref|YP_001453834.1| hypothetical protein CKO_02276 [Citrobacter koseri ATCC BAA-895] gi|157083720|gb|ABV13398.1| hypothetical protein CKO_02276 [Citrobacter koseri ATCC BAA-895] Length = 280 Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 91/285 (31%), Positives = 150/285 (52%), Gaps = 21/285 (7%) Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDL 250 RG +SR + +V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + DL Sbjct: 2 RGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVDL 61 Query: 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R Sbjct: 62 CEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPG 118 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 I + R + P++ + S FIVGFPGET+DDF+ +D + + + FKYSP Sbjct: 119 AVDRQLARIKQWREICPELTLRSTFIVGFPGETEDDFQMLLDFLKEARLDRVGCFKYSPV 178 Query: 371 LGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-- 425 G + + +QV E VK E R + LQ+++ +++ VG+ I V+I++ KE Sbjct: 179 EGAGANALPDQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIIDEVDKEGAI 235 Query: 426 GKLVGRSPWLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 G+ + +P + V + N+ GD+I+V++ + L+G V Sbjct: 236 GRSMADAPEIDGAVYLNGETNVKPGDVIRVKVDNADEYDLWGSRV 280 >gi|329954832|ref|ZP_08295849.1| ribosomal protein S12 methylthiotransferase RimO [Bacteroides clarus YIT 12056] gi|328526936|gb|EGF53947.1| ribosomal protein S12 methylthiotransferase RimO [Bacteroides clarus YIT 12056] Length = 432 Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 117/450 (26%), Positives = 203/450 (45%), Gaps = 39/450 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMD--DADLIVLNTCHIREKAAEKVYSFLGRIR 88 + GC N+ DS + G+ + + + V+NTC A E+ + + Sbjct: 10 TLGCSKNLVDSEHLMRQLEEAGFHVTHDAERPKGQIAVINTCGFIGDAKEESINMI---- 65 Query: 89 NLKNSRIKEGGDL-LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ ++ KE G L + V GC+++ +E+ P V+ G + L + L +A Sbjct: 66 -LEFAQAKEEGSLEKLYVMGCLSERYLKELAIEIPQVDKFYGKFNWKELLQDLGKA---- 120 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 Y E ER Y A+L I EGCD+ C++C +P G ISR + Sbjct: 121 ------YHDELHIERTLTTPRHY-------AYLKISEGCDRKCSYCAIPIITGRHISRPM 167 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLVRLRYT 266 +++DE + L+ GV E ++ Q + + G+D +K +L+ +SEI G+ +R Sbjct: 168 EEILDEVKYLVARGVKEFQVIAQELTYY---GVDLYKKQMLPELIERISEIPGVEWIRLH 224 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++P L + + + Y+ + +Q SD +L M R T E ++I++ R Sbjct: 225 YAYPAHFPMDLFRVMRERPNVCKYMDIALQHISDNMLDKMRRHVTKEETYRLIEKFREEV 284 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV-DEN 385 P I + + +VG PGET+ DF + V K+ + + +F YS T + E V + Sbjct: 285 PGIHLRTTLMVGHPGETEADFEELKEFVRKVRFDRMGAFAYSEEERTYAAAHYEDVIPQE 344 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL- 440 VK RL L + + A VG+ ++V+I++ E +GR SP + VL Sbjct: 345 VKQARLDELMSIQQGISAELSAAKVGKRMDVIIDR--LEGDYYIGRTEFDSPEVDPEVLI 402 Query: 441 --NSKNHNIGDIIKVRITDVKISTLYGELV 468 K IG+ +V I + L+G ++ Sbjct: 403 ECGDKVLEIGNFYRVEIINSDDFDLFGRVL 432 >gi|194335608|ref|YP_002017402.1| MiaB-like tRNA modifying enzyme [Pelodictyon phaeoclathratiforme BU-1] gi|194308085|gb|ACF42785.1| MiaB-like tRNA modifying enzyme [Pelodictyon phaeoclathratiforme BU-1] Length = 453 Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 109/409 (26%), Positives = 195/409 (47%), Gaps = 45/409 (11%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + D +G+ + + ADLI+++TC + ++A +K + I+ Sbjct: 13 TLGCKLNYAETSTILDQLSKKGWLLSSIGERADLIIIHTCAVTKQAEQKCRQKIRAIKR- 71 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPI--VNVVVGPQTYYRLPELLERARFGKR 148 KN K + V GC +Q E + S I ++ ++G + + R+ Sbjct: 72 KNPSSK------IAVIGCYSQFNPEAL---SAIDGIDAILGSNDKFDI------KRYEDI 116 Query: 149 VVDTDYSVEDKFERLSIVD---GGYNRKRGVT-----AFLTIQEGCDKFCTFCVVPYTRG 200 ++ T+ S + + ++ GY+ + AFL IQ+GCD C++C +P RG Sbjct: 117 LLGTEPSPLVRVTPANTIEKVYPGYSLPAAASCERTRAFLKIQDGCDNGCSYCAIPLIRG 176 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 S + +V+ A L +G EI L G N +R GL +LL L E+ + Sbjct: 177 GSRSLPAAHIVERAHLLASSGYREIVLTGVNTGDYRSGGLK-----LKELLRMLEEVS-I 230 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR-QII 319 R+R ++ P + LI ++P+ H+P+QSGSDRIL++M R + YR +++ Sbjct: 231 SRIRISSIEPDIVDRELIALVAGSKKIVPHFHIPLQSGSDRILRAMRRHYDTALYRDRVL 290 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 + ++ D AI +D +VG+PGET++DF ++++ A F S R PG+ + Sbjct: 291 MSVENI-ADCAIGADVMVGYPGETEEDFLKMYHFIEELPLASLHVFSCSIR---PGTRLA 346 Query: 380 EQVDENVK--------AERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 Q+ + + A R L + R + F G+ VLIE+ Sbjct: 347 LQITNSERKPVESAEIARRYSELAELGRRHEARFKARYTGKECMVLIER 395 >gi|256379799|ref|YP_003103459.1| MiaB-like tRNA modifying enzyme YliG [Actinosynnema mirum DSM 43827] gi|255924102|gb|ACU39613.1| MiaB-like tRNA modifying enzyme YliG [Actinosynnema mirum DSM 43827] Length = 469 Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 124/462 (26%), Positives = 209/462 (45%), Gaps = 49/462 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSF 83 +R + + GC N DS + + G++ V+ AD++V+NTC E A + V + Sbjct: 8 KRVAMLTLGCARNEVDSEELAGRLTAGGWQLVDDE--ADVVVVNTCGFVESAKKDSVDTL 65 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L +S K VV GC+A+ G E+ P N V+G Y L + L+ Sbjct: 66 LA----ASDSGAK------VVAVGCMAERYGAELAESLPEANAVLGFDHYGDLADRLDDV 115 Query: 144 RFGK-----RVVD-------TDYSVEDKFERLSIVDGGYN----RKR---GVTAFLTIQE 184 GK + VD T ++K + + + G+ R R A L I Sbjct: 116 LAGKALESHKPVDRRTLLPITPVKRQEKAQEVQVPGHGWGPRVLRTRLDDAPVAPLKIAS 175 Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244 GCD+ C+FC +P RG +SR ++V EA L + GV E+ L+ +N ++ K L E Sbjct: 176 GCDRRCSFCAIPSFRGAFVSRHPDEIVAEAMWLAEQGVRELFLVSENSTSY-AKDLPREL 234 Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 LL L+ I+G+ R+R + P + L+KA + Y + Q S+ +L+ Sbjct: 235 GALEQLLPRLAGIEGVDRVRVSYLQPAETKPSLVKAIATTPGVADYFDMSFQHSSEAVLR 294 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA-----TMDLVDKIGY 359 M R + + ++ +IR + P I S+FIVGFPGET+ D T +D +G Sbjct: 295 RMRRFGSTESFLALVAQIRELAPQAGIRSNFIVGFPGETEADVAELERFLTEARLDAVGI 354 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEV 416 F YS GT + ++ D + AE R+ L ++L Q+ ++ Sbjct: 355 -----FGYSDEDGTEAEGLGDKHDADTVAERVSRISALVEELTAQRAEDRVGEEVVVLVE 409 Query: 417 LIEKHGKE-KGKLVGRSPWL--QSVVLNSKNHNIGDIIKVRI 455 E + G+ ++P + + V+ N+ ++GD+++ R+ Sbjct: 410 HEEDDETDCTGRAAHQAPEVDGECVITNADGLSVGDLVRCRV 451 >gi|257791372|ref|YP_003181978.1| MiaB-like tRNA modifying enzyme YliG [Eggerthella lenta DSM 2243] gi|257475269|gb|ACV55589.1| MiaB-like tRNA modifying enzyme YliG [Eggerthella lenta DSM 2243] Length = 455 Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 123/464 (26%), Positives = 205/464 (44%), Gaps = 37/464 (7%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + P FV + GC N D+ RM G+ + +AD +V+NTC + A E+ Sbjct: 10 VAPCVAFV-TLGCAKNEADTARMRVRLAEAGFLIEDDPAEADAVVVNTCSFIQSATEESI 68 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + + N + G L +VAGC+ GE++ + +V + + + Sbjct: 69 EAVFDAAGMPN--VAAGAPL--IVAGCMPARYGEDL------ADELVEARAFVPCSREDD 118 Query: 142 RARFGKRVVDTDYSVEDKFERLSI-VDGGYNRKRG-----------VTAFLTIQEGCDKF 189 A + D +++ GG G A++ I +GCD+F Sbjct: 119 IAAIVADALGVDAPGGGAAASVTLSASGGAAEVEGSRAALAALPAAPFAYVKISDGCDRF 178 Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249 CT+C +PY RG S L V + + G EI L+ Q+ W G D E + + Sbjct: 179 CTYCTIPYIRGRYRSFPLDDVRADVAAQVAAGAREIVLIAQDTGRW-GADFD-EPSSLAA 236 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 L+ +L+E R P +SD L+ A D + Y +P+Q IL++MNR Sbjct: 237 LVAALAEEFPQTWFRIMYIQPEGLSDELLDAVAAHDNVCDYFDIPLQHVDAGILRAMNRT 296 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + E+ ++DR+ + P + + I GFPGET++ F V++ + F YS Sbjct: 297 GSREEFLALVDRVLAHVPGATLRTTLIAGFPGETEEQFEDLCSFVEEGLFDYVGVFPYSR 356 Query: 370 RLGTPGSNMLEQVDE---NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 GT ++ Q+DE N +A+RL L + +++ A VG+ ++VL+E +E G Sbjct: 357 EEGTRAFDLPGQLDEDEKNDRAQRLRDLADAVCCPRIA---ARVGREMDVLVEGV-EEDG 412 Query: 427 KLVGR----SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 +L GR +P + V G+I +VRI D + + GE Sbjct: 413 QLFGRAMCQAPEVDGVTYLDAGEP-GEIRRVRIVDALLYEMEGE 455 >gi|312195010|ref|YP_004015071.1| MiaB-like tRNA modifying enzyme YliG [Frankia sp. EuI1c] gi|311226346|gb|ADP79201.1| MiaB-like tRNA modifying enzyme YliG [Frankia sp. EuI1c] Length = 510 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 109/421 (25%), Positives = 177/421 (42%), Gaps = 27/421 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 R + + GC N DS + + G+ V+ DAD +++NTC + A + L Sbjct: 7 HRVALVTLGCSRNEVDSEELAARLAAGGFRLVDDAADADAVLVNTCGFVDVAKKDSIDAL 66 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 L+ G VV GC+A+ G E+ P + ++G Y + + L Sbjct: 67 LAADGLRGGGGSGPGPQAVVAVGCLAERYGAELAESLPEADAILGFDAYPDIADRLSAVL 126 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYN----------------------RKR---GVTAF 179 G R +S VD G R+R G A Sbjct: 127 AGNRPAAHVPRDRRSLLPISPVDRGAAAAGVVVPGHGTHAPTSVGAAVVRRRLDDGPVAA 186 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L I GCD+ C+FC +P RG +SR ++ EA L G E+ L+ +N ++ GK Sbjct: 187 LKISSGCDRRCSFCAIPSFRGSHVSRPPQDILAEAEWLAGQGARELVLVSENSTSY-GKD 245 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL L+ G+VR+R P + L++ + PYL L Q S Sbjct: 246 L-GDLRALEKLLPQLAATPGIVRVRTVYLQPAETRPTLLEVLLTTPGVAPYLDLSFQHAS 304 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+ M R + ++ ++ R R+ P + S+FIVGFPGET +D D +++ Sbjct: 305 PAVLRRMRRFGGSADFLDLLRRGRAFAPALGARSNFIVGFPGETPEDLDILADFLEQAEL 364 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 F YS GT + ++ E +R + + + + + VG+ +EVL+E Sbjct: 365 DAIGIFGYSDEDGTEAVGLPGKLSEAEIEDRRARIADLVEQLTAARAERRVGETVEVLVE 424 Query: 420 K 420 + Sbjct: 425 E 425 >gi|223038823|ref|ZP_03609115.1| 2-methylthioadenine synthetase [Campylobacter rectus RM3267] gi|222879796|gb|EEF14885.1| 2-methylthioadenine synthetase [Campylobacter rectus RM3267] Length = 420 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/351 (27%), Positives = 176/351 (50%), Gaps = 24/351 (6%) Query: 51 QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVA 110 Q YE + AD+I++NTC A E+ + I ++ +R K G LLVV GC+ Sbjct: 11 QNYEITPEVARADVIIVNTCGFINSAKEES---IRAILDMHEARKK--GSLLVVT-GCLM 64 Query: 111 QAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGY 170 Q EE+++ P V++ G Y ++ E++ + + + D ++ ER+ I Y Sbjct: 65 QRYREELMKELPEVDLFTGVGDYDKIDEIILKKQ---NLFSPDTYLQANEERV-ITGSNY 120 Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 + A++ I EGC++ C+FC +P +G SRSL +V E +KL+ G + + L Q Sbjct: 121 H------AYIKISEGCNQKCSFCAIPTFKGKLKSRSLENIVGEVQKLVKKGYYDFSFLSQ 174 Query: 231 NVNAW-RGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288 + +++ R + DG L+ ++ +I+G+ R +P S+ LI+ V Sbjct: 175 DSSSYMRDHAVSDG----LISLIDAVEKIEGVKTARILYLYPSTTSNALIERIIASPVFA 230 Query: 289 PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFR 348 Y +P+Q SD++LK M R A +++++ ++ P+ + + IVG PGE++ +F Sbjct: 231 NYFDMPIQHASDKMLKIMRRGSGAARIKELLNLMKKA-PNAFLRTGVIVGHPGESEAEFD 289 Query: 349 ATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399 + + + + +F YS T M EQV + ++RL ++K R Sbjct: 290 ELCAFLQEFKFDRVSAFAYSKEEDTLSYEM-EQVPAKIISKRLSKIEKITR 339 >gi|213029627|ref|ZP_03344074.1| hypothetical protein Salmonelentericaenterica_48731 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 249 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 111/204 (54%), Gaps = 11/204 (5%) Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-- 235 A+L I EGC+ CTFC++P RG +SR + V+ EA++L+D GV EI ++ Q+ +A+ Sbjct: 48 AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGV 107 Query: 236 ----RGKGLDGE--KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289 R +GE K + L LS++ RL Y +P + A G + +P Sbjct: 108 DVKHRTGFHNGEPMKTSMVSLCEQLSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LP 164 Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349 YL +P+Q S RILK M R + I + R + P++ + S FIVGFPGET++DF+ Sbjct: 165 YLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQM 224 Query: 350 TMDLVDKIGYAQAFSFKYSPRLGT 373 +D + + + FKYSP G Sbjct: 225 LLDFLKEARLDRVGCFKYSPVEGA 248 >gi|315502559|ref|YP_004081446.1| miab-like tRNA modifying enzyme ylig [Micromonospora sp. L5] gi|315409178|gb|ADU07295.1| MiaB-like tRNA modifying enzyme YliG [Micromonospora sp. L5] Length = 500 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 116/457 (25%), Positives = 189/457 (41%), Gaps = 73/457 (15%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + + GC N DS + + G++ + AD++V+NTC EKA + L Sbjct: 14 RRVALLTLGCARNEVDSEELAARLHADGWQVTTDGEGADVVVVNTCGFVEKAKQDSIQTL 73 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----PQTYYRLPELL 140 + VV AGC+A+ G E+ P V+ P RL +L Sbjct: 74 LAAADTGAK---------VVAAGCMAERYGRELADSLPEAQAVLSFDDYPDIAARLDSVL 124 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIV-----DGGYN------------------------ 171 G ++ D+ E L + D + Sbjct: 125 AGEAIGA------HTPRDRRELLPLTPVKRRDAAVSLPGHGTPARVAPETDAHTPAHLRQ 178 Query: 172 --RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226 R R G A L + GCD+ C FC +P RG +SR+ +++ EA L GV E+ Sbjct: 179 VLRHRLDTGPVASLKLASGCDRRCAFCAIPAFRGAFVSRTPDELLAEAEWLAKTGVRELV 238 Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286 L+ +N ++ GK L G+ LL L+ I G+VR+R + P + L++ Sbjct: 239 LVSENSTSY-GKDL-GDPRALEKLLPQLAAIDGIVRVRASYLQPAETRPGLVEVIATTPG 296 Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 + Y L Q S+ +L+ M R + + +++ R++ PD S+FIVGFPGET D Sbjct: 297 VAAYFDLSFQHSSEPVLRRMRRFGSTDRFLELLASARALAPDAGARSNFIVGFPGETKQD 356 Query: 347 FRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKL 398 T +D IG F YS GT + + +V + ++L L +L Sbjct: 357 VAELVRFLTEARLDAIGM-----FDYSDEDGTEAAGLTGKVSAATIKRRYDKLSALADEL 411 Query: 399 REQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSP 433 Q+ +G +EVL++ G +G+ ++P Sbjct: 412 CSQRAEER---LGATVEVLVDSTADGVVEGRAAHQAP 445 >gi|46203668|ref|ZP_00051189.2| COG0621: 2-methylthioadenine synthetase [Magnetospirillum magnetotacticum MS-1] Length = 359 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 100/330 (30%), Positives = 149/330 (45%), Gaps = 38/330 (11%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ ++GYE D AD++++NTC + A + Sbjct: 15 APRISFV-SLGCPKALVDSERILTHLRAEGYELARRHDGADVVIVNTCGFLDSAKAESLQ 73 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G + E G V+V GC+ A+ EEI + P + V GPQ Y E + Sbjct: 74 AIG-------DAMAENGR--VIVTGCMG-AQPEEIREKYPNLLAVTGPQAY----ESVVA 119 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A V + D F L I G A+L I EGC+ CTFC++P RG Sbjct: 120 A-----VHEAVPPAHDPFLDL-IPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPSLRGDL 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLL 251 +SR + V+ EA KL+ GV E+ ++ Q+ +A WR + + + F DL Sbjct: 174 VSRPAADVLREAEKLVKAGVKELLVVSQDTSAYGIDTRYAPSLWRDREV---RARFYDLA 230 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L ++ VR+ Y +P + A G ++PYL +P+Q S +LK M R Sbjct: 231 KELGDLGAWVRMHYVYPYPHVDEVIPLMAEGK---ILPYLDMPLQHASPSVLKRMRRPGN 287 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341 + I R R + PD+A D FP Sbjct: 288 QEKQLDRIRRWREICPDLAPPLDLHRRFPA 317 >gi|167042354|gb|ABZ07082.1| putative Radical SAM superfamily protein [uncultured marine crenarchaeote HF4000_ANIW97M7] Length = 422 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 115/450 (25%), Positives = 210/450 (46%), Gaps = 38/450 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + +V++YGC + DS + + + G+ V ++DL ++ TC +++ A ++ Sbjct: 3 KIWVEAYGCSSSFADSEMISGLIVNGGHTLVQDQSESDLNLIVTCSVKDVTATRMVH--- 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 RIK+ +VVAGC+ +AE + + + +++ GP + + +++E Sbjct: 60 --------RIKQSQSKPLVVAGCLPKAERHTVEKFAQNASMM-GPNSIGKTLQVIEATLN 110 Query: 146 GKRVV---DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G +VV DTD S ++ I N G+ + I GC CTFC +G Sbjct: 111 GSKVVALDDTDLS------KVGIPKIRLNPAVGI---VEIANGCMSECTFCQTKLAKGDL 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGLV 261 S + +V + ++ + +G EI L + + GLD GE S L+ +S+I Sbjct: 162 NSYRIGDIVRQVKRELADGCKEIWLSSTDNGCY---GLDIGED--LSSLIEQVSQIPEDF 216 Query: 262 RLRYTTSHPRDMS---DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 ++R +P M D L+K+ + V +LH+PVQSGS+ +L +M R HT ++ + Sbjct: 217 KIRVGMMNPMFMPRIRDNLLKSFENNKVFR-FLHVPVQSGSNDVLNNMKRGHTVETFKDV 275 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + + R+ IS+D I+G+P ET ++F T+ L+ + +YS R GT + M Sbjct: 276 VRKFRTKFGPFTISTDIIIGYPTETQENFEETIALLKETRPDIVNLSRYSQRPGTVAAEM 335 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 Q+D R + + + N +G VL +++ G++ GR+ + + Sbjct: 336 -PQIDVAEVKRRSKQVTELNNNISLENNRKWIGWKGNVLFDEN--LDGQVKGRNFAYKPI 392 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +N IG VR+ +L GE+ Sbjct: 393 FVNEITE-IGQTCTVRVVGATNHSLIGEIA 421 >gi|302865999|ref|YP_003834636.1| MiaB-like tRNA modifying enzyme YliG [Micromonospora aurantiaca ATCC 27029] gi|302568858|gb|ADL45060.1| MiaB-like tRNA modifying enzyme YliG [Micromonospora aurantiaca ATCC 27029] Length = 500 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 116/457 (25%), Positives = 189/457 (41%), Gaps = 73/457 (15%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + + GC N DS + + G++ + AD++V+NTC EKA + L Sbjct: 14 RRVALLTLGCARNEVDSEELAARLNADGWQVTTDGEGADVVVVNTCGFVEKAKQDSIQTL 73 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG----PQTYYRLPELL 140 + VV AGC+A+ G E+ P V+ P RL +L Sbjct: 74 LAAADTGAK---------VVAAGCMAERYGRELADSLPEAQAVLSFDDYPDIAARLDSVL 124 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIV-----DGGYN------------------------ 171 G ++ D+ E L + D + Sbjct: 125 AGEAIGA------HTPRDRRELLPLTPVKRRDAAVSLPGHGTPARVAPETDAHTPAHLRQ 178 Query: 172 --RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226 R R G A L + GCD+ C FC +P RG +SR+ +++ EA L GV E+ Sbjct: 179 VLRHRLDTGPVASLKLASGCDRRCAFCAIPAFRGAFVSRTPDELLAEAEWLAKTGVRELV 238 Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286 L+ +N ++ GK L G+ LL L+ I G+VR+R + P + L++ Sbjct: 239 LVSENSTSY-GKDL-GDPRALEKLLPQLAAIDGIVRVRASYLQPAETRPGLVEVIATTPG 296 Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 + Y L Q S+ +L+ M R + + +++ R++ PD S+FIVGFPGET D Sbjct: 297 VAAYFDLSFQHSSEPVLRRMRRFGSTDRFLELLASARALAPDAGARSNFIVGFPGETKQD 356 Query: 347 FRA-----TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKL 398 T +D IG F YS GT + + +V + ++L L +L Sbjct: 357 VAELVRFLTEARLDAIGM-----FDYSDEDGTEAAGLTGKVSAATIKRRYDKLSALADEL 411 Query: 399 REQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSP 433 Q+ +G +EVL++ G +G+ ++P Sbjct: 412 CSQRAEER---LGATVEVLVDSTADGVVEGRAAHQAP 445 >gi|317490514|ref|ZP_07948992.1| MiaB-like tRNA modifying enzyme YliG [Eggerthella sp. 1_3_56FAA] gi|316910365|gb|EFV31996.1| MiaB-like tRNA modifying enzyme YliG [Eggerthella sp. 1_3_56FAA] Length = 455 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 123/464 (26%), Positives = 204/464 (43%), Gaps = 37/464 (7%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + P FV + GC N D+ RM G+ + +AD +V+NTC + A E+ Sbjct: 10 VAPCVAFV-TLGCAKNEADTARMRVRLAEAGFLIEDDPAEADAVVVNTCSFIQSATEESI 68 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + + N + G L +VAGC+ GEE+ + +V + + + Sbjct: 69 EAVFDAAGMPN--VAAGAPL--IVAGCMPARYGEEL------ADELVEARAFVPCSREDD 118 Query: 142 RARFGKRVVDTDYSVEDKFERLSI-VDGGYNRKRG-----------VTAFLTIQEGCDKF 189 A + D +++ GG G A++ I +GCD+F Sbjct: 119 IAAIVADALGVDAPGGGAAASVTLSASGGAAEVEGSRAALAALPAAPFAYVKISDGCDRF 178 Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249 CT+C +PY RG S L V + + G EI L+ Q+ W G D E + + Sbjct: 179 CTYCTIPYIRGRYRSFPLDDVRADVAAQVAAGAREIVLIAQDTGRW-GADFD-EPSSLAA 236 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 L+ +L+E R P +SD L+ A D + Y +P+Q IL++MNR Sbjct: 237 LVAALAEEFPQTWFRIMYIQPEGLSDELLDAVAAHDNVCDYFDIPLQHVDAGILRAMNRT 296 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + E+ ++ R+ + P + + I GFPGET++ F V++ + F YS Sbjct: 297 GSREEFLALVGRVLAHVPGATLRTTLIAGFPGETEEQFEDLCSFVEEGLFDYVGVFPYSR 356 Query: 370 RLGTPGSNMLEQVDE---NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 GT ++ Q+DE N +A+RL L + +++ A VG+ ++VL+E +E G Sbjct: 357 EEGTRAFDLPGQLDEDEKNDRAQRLRDLADAVCCPRIA---ARVGREMDVLVEGV-EEDG 412 Query: 427 KLVGR----SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 +L GR +P + V G+I +VRI D + + GE Sbjct: 413 QLFGRAMCQAPEVDGVTYLDAGEP-GEIRRVRIVDALLYEMEGE 455 >gi|289675771|ref|ZP_06496661.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. syringae FF5] Length = 171 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/170 (40%), Positives = 99/170 (58%), Gaps = 2/170 (1%) Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 R L +M R HT EY+ + ++R+ P I+ISSDFIVGFPGET+ DF TM L++ +G+ Sbjct: 1 RSLAAMKRNHTTLEYKSRLRKLRAAVPGISISSDFIVGFPGETEKDFDNTMKLIEDVGFD 60 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 +FSF YSPR GTP +++ + E +K ERL LQ +L +Q + VG I +L+ Sbjct: 61 FSFSFVYSPRPGTPAADLKDDTPEALKKERLAALQHRLNQQGFEISRQMVGSIQRILVTD 120 Query: 421 HG-KEKGKLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468 + K+ G+L GR+ + V N IG V I D + +L G L+ Sbjct: 121 YSKKDPGELQGRTENNRIVNFRCDNPKLIGQFADVHIDDAQPHSLRGSLL 170 >gi|217031506|ref|ZP_03437011.1| hypothetical protein HPB128_21g64 [Helicobacter pylori B128] gi|216946706|gb|EEC25302.1| hypothetical protein HPB128_21g64 [Helicobacter pylori B128] Length = 398 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 97/349 (27%), Positives = 167/349 (47%), Gaps = 32/349 (9%) Query: 61 DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120 +AD+IV+N+C + A V S+ ++ L V+ GC + +G+E+ + Sbjct: 16 EADIIVINSCTVTNGADSAVRSYAKKMVRLNKE---------VLFTGCGVKTQGKELFEK 66 Query: 121 SPIVNVVVGPQTYYRLPELL-ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF 179 + V G ++ LL E+ RF D ++E+K ++V + R AF Sbjct: 67 G-FLKGVFGHDNKEKINALLQEKKRFF-----IDDNLENKHLDTTMVSEFVGKTR---AF 117 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---R 236 + IQEGCD C +C++P RG S +++++ L GV E+ L G NV ++ R Sbjct: 118 IKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDR 177 Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 G + + L+ LS+I GL R+R + P + + + D L +LH+ +Q Sbjct: 178 GSNI-------ARLIKKLSQIAGLKRIRIGSLEPNQI-NDEFLELLEEDFLEKHLHIALQ 229 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 D +L+ MNRR+ R+++++I S + AI +DFIVG PGE++ F ++ Sbjct: 230 HSHDFMLERMNRRNRTKSDRELLEKIAS--KNFAIGTDFIVGHPGESESVFEKAFKNLES 287 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405 + F YS R TP S M + V +RL ++ + + +F Sbjct: 288 LPLTHIHPFIYSKRKDTPSSLMRDSVSLEDSKKRLNAIKDLILHKNKAF 336 >gi|261416782|ref|YP_003250465.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373238|gb|ACX75983.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327266|gb|ADL26467.1| radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 467 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 106/415 (25%), Positives = 179/415 (43%), Gaps = 29/415 (6%) Query: 60 DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119 + + LN C ++ A G ++ L+ + G + + + GC + EE LR Sbjct: 71 EKPEAFYLNVCTVKGNA--------GAMKLLRKAASTFPG-VPIYITGCAPKDFREEALR 121 Query: 120 RSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS-VEDKFERLSIVDGGYNRKRGVTA 178 P V + L EL A + + S + + + R+ Sbjct: 122 TVPHVQ-------FTSLKELDASAILPTQSAQSPSSQINARTPDSNKASRNVLRESPFVG 174 Query: 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGK 238 + I+EGC C FC +G S + +VD+ + L+D+G EI L GQ+ + Sbjct: 175 IVNIEEGCLDACAFCSTHLVKGRLHSFAPQTIVDQVQALVDDGCLEIQLTGQDCACY--- 231 Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPV 295 G D L+ + G R+R +PR + + L+ D D + ++H+PV Sbjct: 232 GFDIGTNLAELTQRILTHVNGNYRIRLGMGNPRHVLSYQEALLNCFTD-DRIYKFIHIPV 290 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355 QSGS+ +LK+MNRRHTA +Y + +S+D IVG+PGET DF T+ L+ Sbjct: 291 QSGSENVLKAMNRRHTARDYATLAHAFTERFRKFTLSTDLIVGYPGETAADFNDTLTLLK 350 Query: 356 KIGYAQAFSFKYSPRLGTPGSNML----EQVDENVKAERLLCLQKKLREQQVSFNDACVG 411 + ++ R GT + + + V +++K ER L + ++ + N +G Sbjct: 351 ETRPTVCNITRFVTRPGTVAARLETASNQAVSDDIKHERSAILAEAFQQIALENNREWIG 410 Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 V+ EK G G + R+ + V L G ++VRIT+ + L E Sbjct: 411 DECTVVTEKPGYRAGTTIARNEAYRPVALQG-TFPAGKTLRVRITEAEPFALLAE 464 >gi|325831383|ref|ZP_08164637.1| ribosomal protein S12 methylthiotransferase RimO [Eggerthella sp. HGA1] gi|325486637|gb|EGC89085.1| ribosomal protein S12 methylthiotransferase RimO [Eggerthella sp. HGA1] Length = 455 Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 123/464 (26%), Positives = 204/464 (43%), Gaps = 37/464 (7%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 + P FV + GC N D+ RM G+ +AD +V+NTC + A E+ Sbjct: 10 VAPCVAFV-TLGCAKNEADTARMRVRLAEAGFLIEVDPAEADAVVVNTCSFIQSATEESI 68 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + + N + G L +VAGC+ GE++ + +V + + + Sbjct: 69 EAVFDAAGMPN--VAAGAPL--IVAGCMPARYGEDL------ADELVEARAFVPCSREDD 118 Query: 142 RARFGKRVVDTDYSVEDKFERLSI-VDGGYNRKRG-----------VTAFLTIQEGCDKF 189 A + D +++ GG G A++ I +GCD+F Sbjct: 119 IAAIVADALGVDAPGGGAAASVTLSASGGAAEVEGSRAALAALPAAPFAYVKISDGCDRF 178 Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249 CT+C +PY RG S L V + + G EI L+ Q+ W G D E + + Sbjct: 179 CTYCTIPYIRGRYRSFPLDDVRADVAAQVAAGAREIVLIAQDTGRW-GADFD-EPSSLAA 236 Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 L+ +L+E R P +SD L+ A D + Y +P+Q IL++MNR Sbjct: 237 LVAALAEEFPQTWFRIMYIQPEGLSDELLDAVAAHDNVCDYFDIPLQHVDAGILRAMNRT 296 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 + E+ ++DR+ + P + + I GFPGET++ F V++ + F YS Sbjct: 297 GSREEFLALVDRVLAHVPGATLRTTLIAGFPGETEEQFEDLCSFVEEGLFDYVGVFPYSR 356 Query: 370 RLGTPGSNMLEQVDE---NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKG 426 GT ++ Q+DE N +A+RL L + +++ A VG+ ++VL+E +E G Sbjct: 357 EEGTRAFDLPGQLDEDEKNDRAQRLRDLADAVCCPRIA---ARVGREMDVLVEGV-EEDG 412 Query: 427 KLVGR----SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 +L GR +P + V G+I +VRI D + + GE Sbjct: 413 QLFGRAMCQAPEVDGVTYLDAGEP-GEIRRVRIVDALLYEMEGE 455 >gi|159036993|ref|YP_001536246.1| MiaB-like tRNA modifying enzyme YliG [Salinispora arenicola CNS-205] gi|238066585|sp|A8M773|RIMO_SALAI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|157915828|gb|ABV97255.1| MiaB-like tRNA modifying enzyme YliG [Salinispora arenicola CNS-205] Length = 507 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 119/497 (23%), Positives = 209/497 (42%), Gaps = 70/497 (14%) Query: 13 MVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHI 72 MVS +R + + GC N DS + + G++ + A+++V+NTC Sbjct: 1 MVSATSASPADGRRVALLTLGCARNEVDSEELAARLHADGWQVTTDGEGAEVVVVNTCGF 60 Query: 73 REKAAE-KVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131 EKA + + + L VV AGC+A+ G E+ P V+ Sbjct: 61 VEKAKQDSIQTLLAAAETGAK----------VVAAGCMAERYGRELADSLPEAQAVLSFD 110 Query: 132 TYYRLPELLER--ARFGKRVVDTDYSVEDKFERLSIVD---------------------- 167 Y P++ +R A +D ++ D+ E L + Sbjct: 111 DY---PDISDRLGAVLAGTAIDA-HTPRDRRELLPLTPVRRREAAVSLPGHGTRAAAAGP 166 Query: 168 GGYN-----------------RKR---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 GG + R+R G A L + GCD+ C FC +P RG +SR Sbjct: 167 GGRSAPVEVDEHTPAHLRPVLRRRLDTGPVASLKLASGCDRRCAFCAIPAFRGAFVSRPP 226 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 +++ EA L GV E+ L+ +N +++ GK L G+ LL L+ + G+VR+R + Sbjct: 227 EELLAEAEWLARTGVRELVLVSENSSSY-GKDL-GDPRALEKLLPQLAAVDGIVRVRASY 284 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 P + L++A + Y L Q S+ +L+ M R + + ++ +R++ P Sbjct: 285 LQPAETRPGLVEAIATTPGVAAYFDLSFQHSSEPVLRRMRRFGSTERFLDLLASVRALAP 344 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV- 386 + S+FIVGFPGET D + +++ F YS GT + + +V Sbjct: 345 EAGARSNFIVGFPGETRADVAELVRFLNEARLDAIGVFDYSDEDGTEAAGLSGKVSATTV 404 Query: 387 --KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKGKLVGRSPWLQ-SVVLN 441 + +RL L +L Q+ +G ++VL++ G +G+ ++P + S L Sbjct: 405 KRRYDRLGALADELCAQRAEQR---LGSTVQVLVDSVDDGVVEGRAAHQAPEVDGSTTLV 461 Query: 442 SKNHNIGDIIKVRITDV 458 + + D+ +R D+ Sbjct: 462 APSGGGVDLAALRPGDL 478 >gi|255323492|ref|ZP_05364623.1| 2-methylthioadenine synthetase [Campylobacter showae RM3277] gi|255299529|gb|EET78815.1| 2-methylthioadenine synthetase [Campylobacter showae RM3277] Length = 415 Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 94/349 (26%), Positives = 177/349 (50%), Gaps = 24/349 (6%) Query: 53 YERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQA 112 YE + + AD+I++NTC A E+ + I ++ +R K G LLVV GC+ Q Sbjct: 8 YEITSDVASADVIIVNTCGFINSAKEES---IRAILDMHEARKK--GSLLVVT-GCLMQR 61 Query: 113 EGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNR 172 EE+++ P V++ G Y ++ E++ + + + D ++ ER+ I Y+ Sbjct: 62 YREELMKELPEVDLFTGVGDYDKIDEIILKKQ---NLFSPDTYLQASEERV-ITGSNYH- 116 Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232 A++ I EGC++ C+FC +P +G SR+L +VDE +KL+ G + + L Q+ Sbjct: 117 -----AYIKISEGCNQKCSFCAIPTFKGKLKSRALENIVDEVQKLVKKGYYDFSFLSQDS 171 Query: 233 NAW-RGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPY 290 +++ R + DG L+ ++ +I+G+ R +P S+ LI+ V + Y Sbjct: 172 SSYMRDHAVSDG----LISLIDAVEKIEGVKTARILYLYPSTTSNALIERIIASRVFVNY 227 Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350 +P+Q S+++LK M R A +++++ ++ P + + IVG PGE++ +F Sbjct: 228 FDMPIQHSSEKMLKIMRRGSGAVRIKELLNLMKKA-PGAFLRTGVIVGHPGESEAEFDEL 286 Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLR 399 + + + + +F YS T M EQ+ + ++RL ++K R Sbjct: 287 CAFLQEFKFDRVSAFAYSKEEDTLSYEM-EQLPAKIISKRLSKIEKITR 334 >gi|157164518|ref|YP_001467029.1| hypothetical protein CCC13826_0582 [Campylobacter concisus 13826] gi|238065314|sp|A7ZE21|RIMO_CAMC1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|112800040|gb|EAT97384.1| conserved hypothetical protein [Campylobacter concisus 13826] Length = 436 Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 96/368 (26%), Positives = 185/368 (50%), Gaps = 26/368 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M Q Y+ + + DAD+I++NTC + A E+ + L Sbjct: 8 SLGCNKNLVDSEIMLGRL--QNYDITDDISDADVIIVNTCGFIKSAKEESIQTI-----L 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + ++ G LLVV GC+ Q +E+++ P V++ G Y ++ E++ + + + Sbjct: 61 EMHEARKNGSLLVV-TGCLMQRYKDELIKELPEVDLFTGVADYDKIDEIILKKQ---NLF 116 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 + ++ ER+ I Y+ A++ I EGC++ C+FC +P +G SRSL + Sbjct: 117 SPETYLQANEERV-ITGSNYH------AYIKISEGCNQKCSFCAIPTFKGKLKSRSLENI 169 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +E + L+ G + + L Q+ +++ R +G+ DG +L+ + +I G+ R Sbjct: 170 TNEVKNLVKKGYYDFSFLSQDSSSYMRDQGINDG----LINLIDEIEKINGVRSARILYL 225 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P S LI + Y +P+Q S+ +LK M R A + +++++ +R+ + Sbjct: 226 YPSTTSKELISRIIASPIFHNYFDMPIQHISENMLKIMKRGSGAKKIKELLNLMRNAQNS 285 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + + IVG PGE+++DF + +++ + + +F YS T M EQ+ + + Sbjct: 286 F-LRTGVIVGHPGESEEDFEELCEFLEEFKFDRISAFAYSKEEDTASFEM-EQIPAKIIS 343 Query: 389 ERLLCLQK 396 +RL ++K Sbjct: 344 KRLSKIEK 351 >gi|309811282|ref|ZP_07705071.1| ribosomal protein S12 methylthiotransferase RimO [Dermacoccus sp. Ellin185] gi|308434764|gb|EFP58607.1| ribosomal protein S12 methylthiotransferase RimO [Dermacoccus sp. Ellin185] Length = 493 Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 121/495 (24%), Positives = 210/495 (42%), Gaps = 69/495 (13%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V + GC N DS + ++G+ V+ +AD+ V+NTC E+A + L Sbjct: 11 VVTLGCARNEVDSEELAGRLSAEGWTLVDDAAEADVAVVNTCGFVEQAKKDSIDAL---- 66 Query: 89 NLKNSRIKEGGDLLVVVA-GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK 147 L+ + +KE G VVA GC+A+ G+++ + P + V+G +Y + L G Sbjct: 67 -LEANELKESGRTQAVVAVGCLAERYGKQLADQLPEADAVLGFDSYTDMSTHLTSVLNGH 125 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAF---------------------------- 179 + + D+ + L I G A Sbjct: 126 K--PEAHMPGDRRKLLPISPAKRQEGAGGLALPGHGAPVSEPSDVEVASPVATPRVIRAR 183 Query: 180 --------LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231 L I GCD+ C FC +P RG ISR + V+ EAR L ++ V E+ L+ +N Sbjct: 184 LDGRPWAPLKIASGCDRRCAFCAIPAFRGAFISRRPADVLAEARWLGEHDVKEVFLVSEN 243 Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 ++ GK L G+ +L L + G+ R+R + P ++ L+ + + PY Sbjct: 244 STSY-GKDL-GDLRLLDTMLPELVAVDGIERVRVSYLQPAEIRPDLLDVMANTPGIAPYF 301 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 + Q S +L++M R + ++D +R P+ I S+ IVGFPGE++ D + Sbjct: 302 DISFQHASGPLLRTMRRFGDRESFLGLLDDVRRRVPNAGIRSNVIVGFPGESEKD----L 357 Query: 352 DLVDKIGYAQAFS----FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407 D +++ A F YS GT +++ ++ RL + E + + Sbjct: 358 DELEQFLVAARLDVVGVFGYSDEDGTEAETYADKLPQDEIDARLEHFRTLTEELNLQRAE 417 Query: 408 ACVGQIIEVLIEKHGKEKG-------KLVGRS----PWLQSVVL----NSKNHNIGDIIK 452 +G+ +EVLIE + + VGR+ P + + + + +GDI++ Sbjct: 418 ERIGERLEVLIEATESDDEDDPEAAVRHVGRAGQQGPDVDGMTYVEAPDGRELRVGDIVE 477 Query: 453 VRITDVKISTLYGEL 467 V + + L GEL Sbjct: 478 VEVVATEGIDLVGEL 492 >gi|294643380|ref|ZP_06721199.1| conserved domain protein [Bacteroides ovatus SD CC 2a] gi|292641258|gb|EFF59457.1| conserved domain protein [Bacteroides ovatus SD CC 2a] Length = 209 Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 115/196 (58%), Gaps = 12/196 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ F+++YGCQMNV DS + + GY ++++AD + +NTC IR+ A +K+ + L Sbjct: 20 KKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFMNTCSIRDNAEQKILNRL 79 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +LK K+ L+V V GC+A+ ++++ V++VVGP Y LP+L+ Sbjct: 80 EFFHSLK----KKKKRLIVGVLGCMAERVKDDLITNHH-VDLVVGPDAYLTLPDLIAAVE 134 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G++ ++ + S + + + S + G + ++ F++I GC+ FCT+C+VPYTRG E Sbjct: 135 TGEKAINVELSTTETYRDVIPSRICGNH-----ISGFVSIMRGCNNFCTYCIVPYTRGRE 189 Query: 203 ISRSLSQVVDEARKLI 218 SR + +++E L+ Sbjct: 190 RSRDVESILNEVADLV 205 >gi|268679076|ref|YP_003303507.1| MiaB-like tRNA modifying enzyme YliG [Sulfurospirillum deleyianum DSM 6946] gi|268617107|gb|ACZ11472.1| MiaB-like tRNA modifying enzyme YliG [Sulfurospirillum deleyianum DSM 6946] Length = 436 Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 108/443 (24%), Positives = 208/443 (46%), Gaps = 30/443 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ + S GC N+ DS M + YE + AD++++NTC A E+ L Sbjct: 2 KKLHLVSLGCNKNLVDSEVMLGKL--RAYELCDDASQADVLIVNTCGFIGPAKEES---L 56 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I L +R K+G L+V+AGC+++ E++ + V++ G Y ++ E++ A Sbjct: 57 NTIFALHEAR-KKGS--LLVMAGCLSERYKEDLTKELKEVDLFTGVGDYDKIDEII--AL 111 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 R + Y + ++ ER ++ G A++ + EGC++ C+FC +P +G S Sbjct: 112 RQNRFTPSTYLMNEE-ER--VITGS-----NAHAYVKLSEGCNQACSFCAIPGFKGKLHS 163 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R+L ++ E + L+ G + + + Q+ +++ GEK L+ ++ +I+G+ R Sbjct: 164 RTLESLIKEVKALVSKGFYDFSFISQDSSSYLRDM--GEKEGLIKLIDAVEKIEGIKSAR 221 Query: 265 YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 +P S+ LI+ + Y +P+Q SD +LK M R + ++ +R Sbjct: 222 ILYLYPTTTSNALIERIIASPLCHNYFDMPIQHISDTMLKRMKRGAGRERIMEQLEMMRK 281 Query: 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 P+ I + FIVG P E+D +F + + + + F YS T M ++D Sbjct: 282 A-PNSFIRTSFIVGHPEESDAEFEELLSFAKRFDFDRVNIFAYSDEEDTSAYEMHGKIDT 340 Query: 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS------V 438 +R+ L K ++ + + VG+ + +LIE E +G L + + Sbjct: 341 KTINKRIKQLDKIVQAKTKQSFEKEVGKEVLILIEGESSEHELFMGARELLWAPGIDGEI 400 Query: 439 VLNS---KNHNIGDIIKVRITDV 458 ++N +N +IG + +IT++ Sbjct: 401 LVNDSEVENVSIGASYRAKITEL 423 >gi|256081446|ref|XP_002576981.1| radical sam proteins [Schistosoma mansoni] gi|238662272|emb|CAZ33218.1| radical sam proteins, putative [Schistosoma mansoni] Length = 810 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 132/530 (24%), Positives = 219/530 (41%), Gaps = 109/530 (20%) Query: 19 DQCI---VPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYE----------------RVN 57 D C+ +P++F FV+++GC N DS M + GY ++ Sbjct: 35 DLCLSSNLPEKFHVFVQTWGCAHNTSDSEYMTGLLVKYGYRVTLDGSQITNGCESEANIS 94 Query: 58 SMDD----------------------------------ADLIVLNTCHIREKAAEKVYSF 83 S D AD+ VLN+C ++ A + Sbjct: 95 STSDFACGCQDNGDQCCSKEKNSDKGNVVLSNCDAKKNADVWVLNSCTVKGPAED----- 149 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQA-EGEEILRRSPIVNVVVGPQTYYRLPELLER 142 RN IK G VV +GCV Q+ G + L+ V+G R+ E++E Sbjct: 150 --HFRNAVLEGIKLGKR--VVASGCVPQSRPGADYLKGVS----VIGVHQIDRIVEVVEE 201 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + +S +++ D R+ + L I GC CT+C RGI Sbjct: 202 T-LQESSSSATHSSSSSLAGIAL-DLPKIRRNPLIEILAISTGCLNACTYCKTKQARGIL 259 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---------------GEKCTF 247 S + Q++D A++ GV E+ L +++ A+ G+ LD T Sbjct: 260 ASYPIEQLLDRAKQAFKEGVKELWLTSEDLGAY-GRDLDRTTSSLICPGLSEKWSHHITL 318 Query: 248 SDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDV--LMPYLHLPVQSGSDRILK 304 +DLL L I LR ++P + D L++ L + +LH+PVQSGSD +L Sbjct: 319 ADLLAGLVPIIPAGCMLRLGMTNPPYILDQLVEIAEVLSHPRVYSFLHIPVQSGSDAVLD 378 Query: 305 SMNRRHTAYEYRQIIDRI-RSVRPD----------------IAISSDFIVGFPGETDDDF 347 +M R +T E+ ++D + ++V+P + I++D I GFP ET++DF Sbjct: 379 AMKREYTMEEFSSVVDYLMQNVKPPNLPPGAAHDTVNGSGTLTIATDVICGFPTETNNDF 438 Query: 348 RATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407 T++L++K + ++ PR GTP +NM + + + R L R + D Sbjct: 439 NETVELIEKYQFPVLHINQFFPRPGTPAANMSRKANSSEVKSRTRRLHDLFRSYRTY--D 496 Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457 VG + VLI + + VG + + ++L G I+ VRI + Sbjct: 497 GRVGCEVRVLITEPSFDGKFWVGHTKAYEQILLPKDPDVYGRIVLVRIIE 546 >gi|254457391|ref|ZP_05070819.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacterales bacterium GD 1] gi|207086183|gb|EDZ63467.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacterales bacterium GD 1] Length = 437 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 110/459 (23%), Positives = 214/459 (46%), Gaps = 57/459 (12%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + + + S GC N+ D+ M M Q +E ++ +AD+I++NTC + A ++ Sbjct: 1 MSNKLHIVSLGCTKNLVDTEVM--MGKLQNFELTDTESEADVIIVNTCGFIDAAKQES-- 56 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-- 140 + + NL +R KE D ++V+AGC+++ E++ + P V++ G Y + ELL Sbjct: 57 -INTVLNLHEAR-KE--DSVLVMAGCLSERYKEDLATQMPEVDIFTGVGDYDHIDELLRE 112 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYT 198 +++RF V ++DG G T A++ + EGC++ C+FC +P Sbjct: 113 KKSRFSDEVF--------------LIDGSERVVTGSTYHAYIKLSEGCNQTCSFCAIPSF 158 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI 257 +G SR+L + E L+ G + + + Q+ +++ R + + K S L+ + I Sbjct: 159 KGKLNSRNLDSIAKEVEGLVAKGYYDFSFVSQDSSSYLRDQNI---KDGLSLLIQRIELI 215 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 +G+ R +P + L+K ++ Y +P+Q +D +L+ M R + + Sbjct: 216 EGVKSARILYLYPSTTTISLLKNIAKSEIFHNYFDMPIQHINDDMLRMMKRGFGKDKTIE 275 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++D +R + P+ + + FIVG P ET++ F + G+ + F YS TP + Sbjct: 276 LLDFMRGL-PNSFVRTSFIVGHPDETEEMFEEMCEFAASFGFDRINVFSYSDEETTPAYD 334 Query: 378 MLEQVDENVKAERLL--------CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 M ++ + A R C K L+ + VG+ IE++I+ E L+ Sbjct: 335 MSNKISVELIASRAQILGDIASECTHKSLQNE--------VGKDIELIIDGESNEHEYLL 386 Query: 430 G--RSPWLQ----SVVLNSKNHN----IGDIIKVRITDV 458 ++ W + +N + + G I K ++T++ Sbjct: 387 SARKTIWAPEIDGEIYVNDRTKDDELEFGKIYKAKVTEL 425 >gi|237756406|ref|ZP_04584949.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237691441|gb|EEP60506.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 179 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/181 (38%), Positives = 115/181 (63%), Gaps = 9/181 (4%) Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 HLP+Q+GSDRIL++M+R +T EY Q I+ ++ P+IA+S+D IVGFPGET +D+ T+ Sbjct: 1 HLPIQAGSDRILQAMDRGYTQKEYLQKIELLKKYIPNIALSTDIIVGFPGETYEDYLETV 60 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSN--MLEQVDE-NVKAERLLCLQKKLR-EQQVSFND 407 ++ ++ Y Q F+FKYSPR GTP ++ M E +E + + L+ LQK + ++ + + D Sbjct: 61 KVIKEVEYDQVFAFKYSPRPGTPAADLPMTESPEELSKRLNDLINLQKDITFKKNLGYQD 120 Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 +I+E+L+E+ +E KLVGR+ + V +G ++ V+I V +L G + Sbjct: 121 ----KIVEILVEEINQE-NKLVGRTRTNKLVYAEGSPEYLGKLVNVKIEKVNRFSLEGSI 175 Query: 468 V 468 + Sbjct: 176 I 176 >gi|237750091|ref|ZP_04580571.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229374278|gb|EEO24669.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 431 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 100/396 (25%), Positives = 188/396 (47%), Gaps = 26/396 (6%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ V S GC N+ DS M Q YE + AD+I++NTC E A ++ L Sbjct: 2 KKLHVVSLGCSKNLVDSEIMLGKL--QDYEITQDLGSADVIIINTCGFIEAAKKES---L 56 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G I R K+G L+V +GC+ +EI P ++++ G Y ++ +++ Sbjct: 57 GHIFEALEGR-KKGA--LLVASGCLVARYAKEIKEMIPEIDILTGVSDYDKIDTMIK--- 110 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K+ V D K E+ +V G + A++ I EGC++ C+FC +P +G S Sbjct: 111 -DKKGVMNDSVYLQKDEK-RVVTGSQ-----IHAYVKISEGCNQQCSFCAIPNFKGKLQS 163 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 RS+ +++E L G +I+ + Q+ +++ R KG++ + + + IK R+ Sbjct: 164 RSIDSILNEVESLAKQGYKDISFIAQDTSSFLRDKGVNDGLLKLINAIDAQGAIKS-ARI 222 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y D+ L+ + + Y +P+Q + +L M R H + ++++ ++ Sbjct: 223 LYLYPSSTDIE--LLDGIANSQIFQNYYDMPIQHSAKSVLSHMQRSHK--DMIKLLEYMK 278 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 + P+ + S IVG+P ET+DDF A + ++ + + F+YS T LE++ Sbjct: 279 KI-PNSFVRSSVIVGYPTETEDDFNALCEFLESFRFDRLNVFEYSKEEDTKAGK-LEEIP 336 Query: 384 ENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 ++ +R+ ++K L + A + I +IE Sbjct: 337 RKIRTQRINKVKKILAKIDKQHFSAMLDTHIPCIIE 372 >gi|261323191|ref|ZP_05962388.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261299171|gb|EEY02668.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 350 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 140/297 (47%), Gaps = 38/297 (12%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS R+ S+GYE D ADL+++NTC + A ++ Sbjct: 3 APRVSFV-SLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLE 61 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 +G N E G V+V GC+ AE + I R P V + GPQ Y E + Sbjct: 62 AIGLALN-------ENGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAY----ESVMN 107 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 A V + D F L G R A+L I EGC C+FC++P RG Sbjct: 108 A-----VHEVAPPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDL 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLL 251 +SR +++V+ EA KL+ GV EI ++ Q+ +A+ GLD + + F DL Sbjct: 162 VSRPINEVLREAEKLVQAGVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDLS 218 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 L E+ VR+ Y +PR + A G ++PYL +P Q S +LK+M R Sbjct: 219 RELGEMGVWVRMHYVYPYPRVDEVIPLMAEGK---ILPYLDIPFQHASPAVLKNMRR 272 >gi|237750753|ref|ZP_04581233.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229373843|gb|EEO24234.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 412 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 102/353 (28%), Positives = 169/353 (47%), Gaps = 45/353 (12%) Query: 51 QGYERVNSMDDADLIVLNTCHIREKAAEKV------YSFLGRIRNLKNSRIKEGGDLLV- 103 + +E V S +AD I++N+C + KA +V YS G+ +K G+ L Sbjct: 6 KNHEIVASEIEADTIIINSCTVTNKADREVRGYARKYSSEGKKVLFTGCGVKHSGENLFN 65 Query: 104 --VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161 +V G A + E I N + + LP + R K V DT Sbjct: 66 NGLVNGVFAHSHKESI-------NDFLSSENRVFLP----KERVNKHV-DTTL------- 106 Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221 L V G V AF+ IQEGC+ C++C++P RG S S + ++D+ + L +G Sbjct: 107 -LPRVVGK------VRAFIKIQEGCNFACSYCIIPSVRGSARSFSEAHILDQIKILEQSG 159 Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281 V E+ L G N+ ++ GLD K + L+ + +I G++R+R + P + ++ Sbjct: 160 VTEVILTGTNIGSY---GLD-TKTHIATLIQKIHDISGILRIRLGSLEPSQIDSAFLEIL 215 Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPG 341 +L+ L +LH+ +Q S+ +LK MNR++T ++ + I S ++ +D+I+G G Sbjct: 216 -ELNKLERHLHIALQHTSESMLKIMNRKNTFERDLELFNAIAS--KGFSLGTDYIIGHYG 272 Query: 342 ETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN---MLEQVDENVKAERL 391 ET + F + ++K+ F YSPR GT + L QV +V ERL Sbjct: 273 ETKEIFDEAICNLEKLPLTHIHPFIYSPRFGTKSAKNELKLTQVKGDVAKERL 325 >gi|323455423|gb|EGB11291.1| hypothetical protein AURANDRAFT_1140 [Aureococcus anophagefferens] Length = 446 Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 119/454 (26%), Positives = 201/454 (44%), Gaps = 50/454 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN---SMDDADLIVLNTCHIREKAAEKVY 81 +R +V+++GC NV DS M + S+GYE D AD V+N+C +++ + Sbjct: 7 KRVYVRTFGCSHNVSDSEYMCGLLASEGYEVSTDRADADAADAWVVNSCTVKDPSQA--- 63 Query: 82 SFLGRIR-NLKNSRIKEGGDLLVVVAGCVAQAE----GEEILRRSPIVNVV--VGPQTYY 134 +F+ +R +K+ + VVV+GC+ Q E ++ R+ P ++ VG + Sbjct: 64 AFMKEVRRGMKDGKA-------VVVSGCIPQGERGLVKKQGGRKPPELDGASSVGIKQIG 116 Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV 194 R+ E + A G+ E + R + + + GC C +C Sbjct: 117 RVNEAVAAALRGETFHALGSGPLPSLELPKV------RANALVEIVPLSSGCLGACAYCK 170 Query: 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 + RG S +L+ +V + +GV E+ L ++ A+ G L + L + Sbjct: 171 TRHARGALGSYALADIVARVDGALADGVGEVWLSSEDTGAY-GIDLGTSLGALLEALLPV 229 Query: 255 SEIKGLVRLRYTTSHPRDMSD-------CLIKAHGDLDVLMPYLHLPVQSGSDRILKS-- 305 E LR ++P + D CL A + +LH+PVQSGSD +L Sbjct: 230 LEAHPHGMLRVGMTNPPYVLDQLEVLGRCLNHAQ-----VYAFLHVPVQSGSDAVLAKDR 284 Query: 306 MNRRHTAYEYRQIIDRIRS-VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 MNR +T ++R ++D + + V +++ +D I GFPGETDDDF AT LV+ + Sbjct: 285 MNREYTVADFRAVVDGLAARVDGGLSLMTDVICGFPGETDDDFDATYALVEDYAFGLINI 344 Query: 365 FKYSPRLGTPGSNMLEQVDENVK--AERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 ++ R GTP ++M VK + RL L + R D VG ++ Sbjct: 345 SQFYARPGTPAASMKRVHTATVKDRSRRLSALTQTFRPY-----DGLVGTVVACAAHAEV 399 Query: 423 KEKG-KLVGRSPWLQSVVLNSKNHNIGDIIKVRI 455 + G +LV + V++ +G +VRI Sbjct: 400 ADGGARLVCHTKTYAKVLVPFDRSLVGARFEVRI 433 >gi|328794005|ref|XP_003251960.1| PREDICTED: putative methylthiotransferase RP416-like, partial [Apis mellifera] Length = 447 Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 124/252 (49%), Gaps = 10/252 (3%) Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS-LSEIKGLVR 262 S S+ VVD+ + L EI L G ++ +W G+ L K DL + L ++ L R Sbjct: 1 SVSVKGVVDQVKALTQQQYNEIVLTGVDIASW-GRDLK-HKGRLGDLCKAILKDVPELKR 58 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 LR ++ P M L MP+LHL +Q+GSD ILK M RRH + +++++ Sbjct: 59 LRLSSIDPIGMDPVLWDLMASESRFMPHLHLSLQAGSDMILKRMKRRHQTKDVGSLVEQL 118 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 RS+RPDI +S+D I GFP E + F+ T D + + F YS R GTP + M + Sbjct: 119 RSIRPDIGLSADIIAGFPTEDESYFQETYDFLKTVAIPYLHVFPYSERKGTPAAQM-PAI 177 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 +V+ ER L+ + S+++ + + + +L+E + G S + L Sbjct: 178 AVSVRKERAARLRNLGAKIASSYHECFINKTVSILMETVDR------GHSEQFSAATLTG 231 Query: 443 KNHNIGDIIKVR 454 K G+II R Sbjct: 232 KEAIPGEIITAR 243 >gi|291333787|gb|ADD93471.1| MiaB-like tRNA modifying enzyme YliG [uncultured marine bacterium MedDCM-OCT-S04-C123] Length = 424 Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 108/367 (29%), Positives = 168/367 (45%), Gaps = 48/367 (13%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M G N++DDAD++V+NTC + A E+ + L Sbjct: 3 SLGCAKNLVDSEIMLGHLMQAGMTITNNVDDADVVVVNTCSFIDSAQEESVDTILESSEL 62 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV- 149 S+ K G L+V AGC+ Q +E+ P V+V +G ++PE + +A + Sbjct: 63 --SKAKHLGQGLIV-AGCLTQRYRKELPELLPEVDVFMGIDQVDQIPEFVRQAHKHREKK 119 Query: 150 ---------VDTDYSVEDKFERLSIVD--------GGYNRKR-----GVTAFLTIQEGCD 187 D + + E L ++D Y R A+L I EGC+ Sbjct: 120 ISHEENAGKSSDDAATNESEEMLPVLDVTARPNYIPDYTTPRFRLTPQHFAYLKIAEGCN 179 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------------ 235 C+FC++P RG SR +V EA+ ++ +G+ EI L+ Q+ + Sbjct: 180 HPCSFCIIPRMRGSHRSRRPEDIVQEAKAMVRDGIKEINLISQDSTYYGMDLRENHKRNI 239 Query: 236 --------RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVL 287 + L + T S LL L+ I+G +R +HP +D LI+ + Sbjct: 240 ASPQKFKEASEALPEDASTLSSLLRQLNAIEGDFWIRILYTHPAHWTDELIQTIAKCKKV 299 Query: 288 MPYLHLPVQSGSDRILKSMNRRHTAYEY-RQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 Y+ +P+Q +L+ M RR T+ EY ++I RIR P+IAI + FIVGFPGET+ Sbjct: 300 AKYVDIPLQHIHSTMLERM-RRETSREYIEELIQRIREGIPNIAIRTTFIVGFPGETEGA 358 Query: 347 FRATMDL 353 F + L Sbjct: 359 FESLKHL 365 >gi|221194815|ref|ZP_03567872.1| RNA modification enzyme, MiaB family [Atopobium rimae ATCC 49626] gi|221185719|gb|EEE18109.1| RNA modification enzyme, MiaB family [Atopobium rimae ATCC 49626] Length = 426 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 103/405 (25%), Positives = 184/405 (45%), Gaps = 48/405 (11%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 GC++N + M G V D A +IV NTC + +A K + L + Sbjct: 15 GCRVNRVELDLMASDLIQLGCAIVEPKDAAAIIV-NTCAVTAEAEAKTRKAIRHAAALPH 73 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 + LVV GCVA +E+ +P NVVV + Sbjct: 74 AP-------LVVATGCVASLFADELSSLAP--NVVVETRK-------------------- 104 Query: 153 DYSVEDKFERLS-----IVDGGYNRKRGVTAFLT-----IQEGCDKFCTFCVVPYTRGIE 202 D E + L + D GY ++ T IQ+GC+ C++C+V RG Sbjct: 105 DMVAEVVMQELGCALDGVTDEGYLLQKPTPTGRTRPGIKIQDGCNNRCSYCIVWKARGAA 164 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S ++V+ + ++ + G E+ L G N+ ++ + + + LL + + R Sbjct: 165 RSLDPAEVLRQIQEAQEAGAHEVVLTGINLGSYTSRFAEKD-VRLPGLLRLILRKTTIER 223 Query: 263 LRYTTSHPRDMSDCLIKA----HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 +R ++ P D+++ L+++ HG + P+LH+ +QSG D L M R + A YR Sbjct: 224 VRLSSLEPPDVNEALLESIAASHGRI---APFLHICLQSGCDETLHRMRRAYGAELYRSA 280 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + R+ P +A+ +D IVGFPGET+++F + ++ +++ F+YS R GTP ++ Sbjct: 281 VAAARTYLPQVALGTDLIVGFPGETEEEFEESYAFCKEMNFSKMHLFRYSKRPGTPAADA 340 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK 423 QV + A R +++ ++ + + VG V++++ GK Sbjct: 341 PNQVPPQIMAARAHKMRELAKKMRYENAQSLVGSTDLVIVQRPGK 385 >gi|253828157|ref|ZP_04871042.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253511563|gb|EES90222.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 443 Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 111/455 (24%), Positives = 209/455 (45%), Gaps = 33/455 (7%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVY 81 + ++ + S GC N+ DS M YE +++AD++++NTC E A E + Sbjct: 1 MQKKLHLISLGCTKNLVDSEVMLGKL--SEYENTQEINEADVVIVNTCGFIEAAKKESIQ 58 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L + K I +V +GC+++ +E+ P ++++ G Y ++ +++E Sbjct: 59 TLLEALETKKQGAI-------LVASGCLSERYAKELKEEIPELDIITGVGDYDKIDKMIE 111 Query: 142 RARFGKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + G++++ V D+ + I+ G + A++ + EGC++ C+FC +P + Sbjct: 112 ERQKGEKILSNAKGVFLADETNK-RIISGS-----KIHAYIKLSEGCNQKCSFCAIPSFK 165 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCTFSDLLYSLSEI 257 G SR+L + E R L G + T + Q+ +++ R G+ DG S + E Sbjct: 166 GKLHSRTLESTLKEVRNLASQGYSDFTFISQDSSSYLRDLGIKDGLVELISGIEDLAKEG 225 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 + R +P S LI+ D + Y +P+Q S ++LK+M R E+ + Sbjct: 226 VNIKSARILYLYPATTSKKLIQKIIDSPIFHNYFDMPLQHASQKVLKTMGRNG---EFME 282 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 +++ +R P+ + + FI+G PGE +++F L++ + + F YS GT + Sbjct: 283 LLEMMRKA-PNSFVRTSFILGHPGEGEEEFEELCQLIENFSFDRINFFAYSKEEGTKSAT 341 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-----GKLVGRS 432 M EQ+ RL + K Q G + LIE KE G+ + + Sbjct: 342 M-EQIPSKTIHSRLKKINKIFTSQYQQNLKKLKGAEVTALIEGKSKEHEFFYAGRELRFA 400 Query: 433 PWLQ-SVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 P + +++N K I + I VKI+ + GE Sbjct: 401 PEIDGEILINDK--TIDEEITSGYYKVKITEIAGE 433 >gi|301629102|ref|XP_002943687.1| PREDICTED: hypothetical protein LOC100490174 [Xenopus (Silurana) tropicalis] Length = 1629 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 76/257 (29%), Positives = 129/257 (50%), Gaps = 21/257 (8%) Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--- 234 A+L I EGC+ CTFC++P RG +SR + V+ EA+ L + GV E+ ++ Q+ +A Sbjct: 762 AYLKISEGCNHRCTFCIIPSMRGDLVSRPVGDVLKEAKALFEGGVKELLVISQDTSAYGV 821 Query: 235 --------WRGKGLDGEKCTFSDLLYSLSEIKGL-VRLRYTTSHPRDMSDCLIKAHGDLD 285 W GK + + L L+ G VRL Y +P + A G Sbjct: 822 DVKYRTGFWDGKPIKTRTLELARTLGGLAASYGAWVRLHYVYPYPSVDEIIPLMAEG--- 878 Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345 +++PYL +P Q +LK M R + + + I R R++ PD+ I S FI GFPGET++ Sbjct: 879 LILPYLDVPFQHSHPDVLKRMKRPASGEKNLERIQRWRAMCPDLVIRSTFIAGFPGETEE 938 Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN---MLEQVDENVKAERLLCLQKKLREQQ 402 +F+ +D + + +A F YS GT ++ ML + + R + + +++ + Sbjct: 939 EFQHLLDFMREAQIDRAGCFAYSDVQGTDANHLPGMLPPEEREPRRARFMAVAEEVSSAK 998 Query: 403 VSFNDACVGQIIEVLIE 419 + VG ++VL++ Sbjct: 999 LR---GRVGATMQVLLD 1012 >gi|58698371|ref|ZP_00373285.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Drosophila ananassae] gi|58535125|gb|EAL59210.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Drosophila ananassae] Length = 235 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 123/231 (53%), Gaps = 8/231 (3%) Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 G L G+ S + L +I L RLR ++ ++ D L+ + LMP+LHL +Q Sbjct: 11 GTDLLGKPSLGSMIRRVLKDIPELKRLRLSSIDVAEVDDELMDLIANESRLMPHLHLSLQ 70 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 SG++ ILK M RRH + + +++S+RP+IA +D I GFP ETD+ F+ T+DL+ K Sbjct: 71 SGNNLILKRMKRRHNREQVIEFCHKMKSLRPNIAFGADIIAGFPTETDEMFQDTVDLLKK 130 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEV 416 +F YS R TP + M QV ENV+ ER+ L++ +E SF + + V Sbjct: 131 TNIVYLHAFPYSERKNTPAARM-PQVPENVRKERVKNLREVNKEIMSSFCQSLINTKQSV 189 Query: 417 LIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 L+E++ VGR+ + L SK I+KV + V+ + L G + Sbjct: 190 LVEQNN------VGRAENFALIKLESKAQ-AKSIVKVNVKGVENNYLIGNI 233 >gi|315452867|ref|YP_004073137.1| putative MiaB-like tRNA modifying enzyme YliG/ Ribosomal protein S12 methylthiotransferase [Helicobacter felis ATCC 49179] gi|315131919|emb|CBY82547.1| putative MiaB-like tRNA modifying enzyme YliG/ Ribosomal protein S12 methylthiotransferase [Helicobacter felis ATCC 49179] Length = 431 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/398 (23%), Positives = 183/398 (45%), Gaps = 30/398 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + + S GC N+ DS M YE + M AD+I++NTC + A E+ L Sbjct: 3 KLHLVSLGCSKNLVDSEVMLGKL--AHYELTSEMSLADVIIINTCGFIQSAKEESIRVLL 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 N + KEG LVV +GC+++ +E+ + P +++ G Y ++ LL + Sbjct: 61 EAINGR----KEGA--LVVASGCLSERYKQELAKELPEIDIFTGVGDYDKIDTLLAQK-- 112 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRK---RGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + +F + + G R V A + + EGC++ C+FC +P +G Sbjct: 113 -----------QSQFSKQVFLAGTQKRTIIGSQVHAHVKLSEGCNQSCSFCAIPSFKGRL 161 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLV 261 S+ + V+ E +L+ G +++ + Q+ +++ + KG+ K L+ ++ + L Sbjct: 162 QSKEIKNVLVEIEQLVKQGFSDVSFIAQDSSSYLKDKGV---KDGLVQLIKAIDKQGALK 218 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R +P + LI+ + + M Y +P+Q SD +LK+M R + ++++ Sbjct: 219 SARIFYLYPTTTTLELIETIANSPIFMNYFDMPIQHISDSMLKTMRRNSNKATHVRLLEA 278 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+V P + + ++G P E + D + + + + F +SP GT M Q Sbjct: 279 MRAV-PASFLRTTLLLGHPHEQEADIAELQEFLQSFSFDRINLFAFSPEEGTKAYEM-PQ 336 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 + V RL + ++ Q + VGQ +++++E Sbjct: 337 IQSKVINARLDQINALVQAQVETSMQQLVGQTLDIIVE 374 >gi|322379262|ref|ZP_08053648.1| radical SAM domain-containing protein [Helicobacter suis HS1] gi|322379873|ref|ZP_08054160.1| radical SAM protein [Helicobacter suis HS5] gi|321147708|gb|EFX42321.1| radical SAM protein [Helicobacter suis HS5] gi|321148299|gb|EFX42813.1| radical SAM domain-containing protein [Helicobacter suis HS1] Length = 440 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/401 (23%), Positives = 188/401 (46%), Gaps = 29/401 (7%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 +VP+ + V S GC N+ DS M Y+ ++ AD+I++NTC + A E+ Sbjct: 9 LVPKLYLV-SLGCSKNLVDSEVMLGRL--ANYDLTQEINLADVIIINTCGFIQAAKEESV 65 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL- 140 L N + KEG LVV +GC+++ +++ P +++ G Y R+ LL Sbjct: 66 RVLLEAINGR----KEGA--LVVASGCLSERYKKQLAAELPEIDIFTGVGDYDRIDALLT 119 Query: 141 -ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 ++++F KRV E+ + G V A++ + EGC++ C+FC +P + Sbjct: 120 SKQSQFSKRVFLAG-------EQKRTITGS-----KVHAYVKLSEGCNQNCSFCAIPSFK 167 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIK 258 G S+S+ +++ E L G +I+ + Q+ +++ LD K L+ ++ + Sbjct: 168 GRLQSKSIERILKEVEILAKQGFSDISFIAQDSSSYL---LDQNVKDGLIKLIKAIDTQQ 224 Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 + R +P + LI++ + + Y +P+Q SDR+LK+M R + ++ Sbjct: 225 MIKSARIFYLYPTSTTLELIESIANSPIFANYFDMPIQHISDRMLKTMRRNSNKANHLKL 284 Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 ++ + ++ P+ + + ++G P E D D + + + F +S T Sbjct: 285 LEAMHAI-PNRFLRTTLLLGHPHENSSDIEELQDFLQSFSFDRINLFAFSAEENTAAYKW 343 Query: 379 LEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 + E++ A RL + + +Q + VGQ +EV++E Sbjct: 344 PQLSQEDISA-RLDQINPLIEQQVQNSMQGLVGQTLEVIVE 383 >gi|330895565|gb|EGH27874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 153 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/141 (43%), Positives = 91/141 (64%), Gaps = 6/141 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK + ++++ V GCVA EG I R+P V+VV GPQT +RLPE+++ A Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAA 118 Query: 144 RFGK-RVVDTDYSVEDKFERL 163 R + VD + +KF+ L Sbjct: 119 RVTRLPQVDVSFPEIEKFDHL 139 >gi|291534091|emb|CBL07204.1| 2-methylthioadenine synthetase [Megamonas hypermegale ART12/1] Length = 169 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 100/167 (59%), Gaps = 1/167 (0%) Query: 302 ILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361 +LK+MNR +T Y++++ +IR+ P+ + ++D IVGFPGETD+DF ++ + +I Y Sbjct: 1 MLKAMNRGYTTAYYKELVAKIRNQFPEASFTTDLIVGFPGETDEDFAQMLEFLKEIRYDA 60 Query: 362 AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKH 421 A++F YS R GTP + M QV + +K ERL L E + N + + + +EV++E Sbjct: 61 AYTFLYSKRSGTPAATMENQVPQELKKERLHKLMDAQNEISLEINQSLLNKTVEVMVEGP 120 Query: 422 GKEKGKL-VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 K + G + + ++ + K+ IGD++KV+IT + L GEL Sbjct: 121 SKTDPNVYTGHTRTNKIILWDHKDEQIGDLVKVKITHPQTWVLKGEL 167 >gi|167471079|ref|ZP_02335783.1| putative tRNA-thiotransferase [Yersinia pestis FV-1] Length = 127 Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats. Identities = 55/121 (45%), Positives = 84/121 (69%), Gaps = 5/121 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ADL++LNTC IREKA EKV+S Sbjct: 8 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 67 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG+ + LK ++ L++ V GCVA EGE++ +R+P V+V+ GPQT +RLPE++ Sbjct: 68 LGQWKLLK----EKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHV 123 Query: 144 R 144 + Sbjct: 124 Q 124 >gi|158313057|ref|YP_001505565.1| RNA modification protein [Frankia sp. EAN1pec] gi|158108462|gb|ABW10659.1| RNA modification enzyme, MiaB family [Frankia sp. EAN1pec] Length = 595 Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 119/241 (49%), Gaps = 2/241 (0%) Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 L + GCD+ C FC +P RG +SR +V+ EA L G E+ L+ +N ++ GK Sbjct: 245 LKLSSGCDRRCAFCAIPSFRGSHVSRRPEEVLAEAEWLAGQGARELVLVSENSTSY-GKD 303 Query: 240 LDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 L G+ LL L+ + G+VR+R P ++ L++ L PYL L Q S Sbjct: 304 L-GDLRALEKLLPLLAAVPGIVRVRTVYLQPAELRPSLLEVLLTTPGLAPYLDLSFQHAS 362 Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 +L+ M R + ++ ++ R R++ PD+ S+ IVGFPGETD+D ++ +++ Sbjct: 363 PAVLRRMRRFGGSTDFLDLLRRARALLPDLGARSNVIVGFPGETDEDVDILVNFLERADL 422 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 F YS GT + M VD R + + + + + +G +EVL+E Sbjct: 423 DAVGVFGYSDEEGTEAAGMAGHVDPEEIESRRAEVTDLVEQLTAARAERRIGTTVEVLVE 482 Query: 420 K 420 + Sbjct: 483 E 483 >gi|256396949|ref|YP_003118513.1| MiaB-like tRNA modifying enzyme YliG [Catenulispora acidiphila DSM 44928] gi|256363175|gb|ACU76672.1| MiaB-like tRNA modifying enzyme YliG [Catenulispora acidiphila DSM 44928] Length = 529 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 131/269 (48%), Gaps = 5/269 (1%) Query: 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA 234 G +A L + GCD+ C+FC +P RG +SR ++DEAR L GV E+ L+ +N + Sbjct: 219 GPSAPLKLASGCDRRCSFCAIPAFRGSYLSRRPHDILDEARWLAGQGVRELVLVSENSTS 278 Query: 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 + GK L G+ LL L+ I G+ LR + P +M LI + ++PY L Sbjct: 279 Y-GKDL-GDLKLLETLLPELTAIDGVDWLRVSYLQPAEMRPTLIDVMASTEGVVPYFDLS 336 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 Q + +L+ M R + ++++ IR+ P + S+FIVGFPGET DF + Sbjct: 337 FQHSAPGLLRRMRRFGGTDSFLELLEAIRTRVPHAGVRSNFIVGFPGETAADFEELETFL 396 Query: 355 DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414 + F YS GT + +++DE+ ER+ L E + VG+ I Sbjct: 397 SQARLDAIGVFGYSDEDGTEAAGYEDKLDEDEIGERVAHLTGLAEELTAQRAEDRVGERI 456 Query: 415 EVLIEK---HGKEKGKLVGRSPWLQSVVL 440 +VL+E G +G+ + P + VL Sbjct: 457 DVLVESVAHDGVAEGRAAFQGPEVDGSVL 485 >gi|297706881|ref|XP_002830253.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like, partial [Pongo abelii] Length = 282 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 121/235 (51%), Gaps = 23/235 (9%) Query: 221 GVCEITLLGQNVNAWR---------------GKGLDGEKCT------FSDLLYSLSEIKG 259 G+ E+TLLGQNVN++R +G T F+ LL +S + Sbjct: 1 GLKEVTLLGQNVNSFRDNSEVQFNNAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDP 60 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 +R+R+T+ HP+D D +++ + + + +HLP QSGS R+L++M R ++ Y +++ Sbjct: 61 EMRIRFTSPHPKDFPDEVLQLIHERENICKQIHLPAQSGSSRVLEAMRRGYSREAYVELV 120 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 +R P +++SSDFI GF GET++D T+ L+ ++ Y F F YS R T + L Sbjct: 121 HHVRESIPGVSLSSDFIAGFCGETEEDHIQTVSLLREVQYNMGFLFAYSMRQKTRAYHRL 180 Query: 380 -EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRS 432 + V + VK RL L RE+ N VG VL+E K L GR+ Sbjct: 181 KDDVPKEVKLRRLEELITVFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRN 235 >gi|238063411|ref|ZP_04608120.1| MiaB tRNA modifying enzyme yliG [Micromonospora sp. ATCC 39149] gi|237885222|gb|EEP74050.1| MiaB tRNA modifying enzyme yliG [Micromonospora sp. ATCC 39149] Length = 515 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 117/478 (24%), Positives = 200/478 (41%), Gaps = 55/478 (11%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + + GC N DS + + G++ + AD++V+NTC EKA + L Sbjct: 30 RRVALLTLGCARNEVDSEELAARLHADGWQVTTDGEGADVVVVNTCGFVEKAKQDSIQTL 89 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + VV AGC+A+ G E+ P V+ Y + L+ Sbjct: 90 LAAADTGAK---------VVAAGCMAERYGRELAESLPEAQAVLSFDDYPDIAARLDAVV 140 Query: 145 FGKRVVDTDYSVEDKFERLSIVD----------GGYNRKR-------------------- 174 G+ +D ++ D+ E L + G+ R Sbjct: 141 AGE-ALDA-HTPRDRRELLPLTPVARRDSAVSLPGHGTSRAAVQTDEHTPAHLRQVLRRR 198 Query: 175 ---GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231 G A L + GCD+ C FC +P RG +SR+ +++ EA L GV E+ L+ +N Sbjct: 199 LDTGPVASLKLASGCDRRCAFCAIPAFRGAFVSRTPDELLAEAEWLAKTGVRELVLVSEN 258 Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 ++ GK L G+ LL L+ I G+VR+R + P + L++A + Y Sbjct: 259 STSY-GKDL-GDPRALEKLLPQLAAIDGIVRVRASYLQPAETRPGLVEAIATTPGVAAYF 316 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 L Q S+ +L+ M R + + +++ R++ P S+FIVGFPGET D + Sbjct: 317 DLSFQHSSEPVLRRMRRFGSTERFLELLAAARALAPQAGARSNFIVGFPGETRGDVEELV 376 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDA 408 + F YS GT + + +V + +RL L +L Q+ Sbjct: 377 RFLSAARLDAIGMFDYSDEDGTEAAGLPGKVSAATIKRRYDRLSALADELCSQRAEER-- 434 Query: 409 CVGQIIEVLIEK--HGKEKGKLVGRSPWLQ-SVVLNSKNHNIGDIIKVRITDVKISTL 463 +G +EVL++ G +G+ ++P + S L + D+ +R D+ +T+ Sbjct: 435 -LGSTVEVLVDSVDDGVVEGRAAHQAPEVDGSTTLVAPADGGVDLAALRPGDLVRATV 491 >gi|148907407|gb|ABR16837.1| unknown [Picea sitchensis] Length = 332 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 140/304 (46%), Gaps = 64/304 (21%) Query: 227 LLGQNVNAWRGKG-LDGE---------------------KCT---FSDLLYSLSEIKGLV 261 LLGQNVN++ LDG K T FS+LL LS + Sbjct: 2 LLGQNVNSYNDISILDGNGAVPTGNSWALSQGFSSICKVKSTGLRFSNLLDRLSIEFPEM 61 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R R+T+ HP+D D L+ D + +HLP QSGS +L+ M R +T Y +++R Sbjct: 62 RFRFTSPHPKDFPDDLLFLMKDRWNICRSIHLPAQSGSTAVLERMRRGYTREVYLDLVER 121 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLE 380 I+++ PD+ +SSDFI GF GET+ D T+ L+ +GY A+ F YS R T N ++ Sbjct: 122 IQNIIPDVGLSSDFICGFCGETEQDHADTLSLIKSVGYDMAYLFAYSLREKTHAHRNYVD 181 Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE--KGKLVGRSP----- 433 V ++VK RL L RE D+ VG +L+E K + +L+G+S Sbjct: 182 DVPDDVKQRRLSELISAFRESTGQRYDSQVGTTQLLLVEGPNKRAPESELIGKSDRGHRI 241 Query: 434 WLQSVVL-------------------------------NSKNHNIGDIIKVRITDVKIST 462 Q+V L N +N IGD ++V IT +T Sbjct: 242 SFQNVPLTDVSKLPPHRMEIAGLGDRPAEDALNLAINGNKRNPRIGDYVEVLITKSSRAT 301 Query: 463 LYGE 466 L+GE Sbjct: 302 LFGE 305 >gi|302846252|ref|XP_002954663.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f. nagariensis] gi|300260082|gb|EFJ44304.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f. nagariensis] Length = 401 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 95/355 (26%), Positives = 165/355 (46%), Gaps = 33/355 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS-MDDADLIVLNTCHIREKAAEKVYSF 83 Q +VK++GC N+ DS M GY R ++ + ADL ++N+C ++ + + S Sbjct: 7 QAVWVKTFGCSHNISDSEYMAGQLQDYGYRRESAGCNPADLWLINSCTVKGPSQAGMSSL 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTYYRLPELLE 141 + + G ++VAGCV Q + +R P + V+G R+ E +E Sbjct: 67 IA---------VGRAGGKRLLVAGCVPQGD-----KRLPELQGVSVLGVTQIDRVVEAVE 112 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G V + + RL + NR + I GC CT+C + RG Sbjct: 113 ETLRGNTV---RLLAKKELPRLDLPKVRRNRH---IEIVPISTGCLGACTYCKTKHARGH 166 Query: 202 EISRSLSQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI--- 257 S + +V+ R+ D V EI + ++ A+ G+ + C+ +LL +L + Sbjct: 167 LGSYDPAALVERVRQAAADPWVREIWISSEDTGAY-GRDIG---CSLPELLDALIAVLPP 222 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 G LR ++P + + L L + YLH+PVQSGSD +L SM R +T E+ Sbjct: 223 DGRTMLRVGMTNPPYVLEHLEALSAALRHPCVFSYLHVPVQSGSDAVLDSMKREYTVAEF 282 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 R+++D + + P + +++D I FPGE+ D T++L+ + + ++ PR Sbjct: 283 RRVVDTLLAGVPGMELATDIITAFPGESPGDHVRTLELLRQYRFPHTHISQFYPR 337 >gi|260841717|ref|XP_002614057.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae] gi|229299447|gb|EEN70066.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae] Length = 316 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/304 (26%), Positives = 138/304 (45%), Gaps = 43/304 (14%) Query: 173 KRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232 +R V F + C CT+C + RG S ++V AR+ + GV EI L ++ Sbjct: 22 RRNVLIFPS--NSCLNQCTYCKTKHARGELGSYPPEEIVSRARQSFEEGVVEIWLTSEDT 79 Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEI--------KGLVRLRYTTSHPRDMSDCLIKAHGDL 284 A+ GK + T +LL+ L E+ G+ Y H +M+ L Sbjct: 80 GAY-GKDIG---VTLPELLWRLVEVIPEGCMLRVGMTNPPYILEHLEEMAKILSHPR--- 132 Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344 + +LH+PVQ+ SD +L M R + +++Q++D ++ P + I++D I GFP ET Sbjct: 133 --VYAFLHVPVQAASDSVLMDMRREYCLSDFKQVVDFLKERVPAVTIATDVICGFPTETA 190 Query: 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404 +DF T+ LV++ + F ++ PR GTP + M +++ Q+ Sbjct: 191 EDFEETLQLVEEYKFPSLFINQFFPRPGTPAAKM-----------------RRVPPQE-- 231 Query: 405 FNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLY 464 VG+I VL+ + +K V + + V++ +G ++ V IT L Sbjct: 232 -----VGEIQNVLVTEESHDKKFYVAHNKYYDQVLVPKDEKLLGKMVTVEITSTGKHYLM 286 Query: 465 GELV 468 G L+ Sbjct: 287 GRLL 290 >gi|307111826|gb|EFN60060.1| hypothetical protein CHLNCDRAFT_133325 [Chlorella variabilis] Length = 298 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 127/234 (54%), Gaps = 10/234 (4%) Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S+ V+DEAR L+D+GV E+ L+ ++ N + DG+ S +L L +++GL + Sbjct: 25 SKPWQAVLDEARHLVDSGVVELNLIAEDTNQYGMDRRDGKG--LSQVLQELGKLEGLRWI 82 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R +P S+ LI + Y+ +P+Q S+ L MNR A+ ++ ++R Sbjct: 83 RLLYCYPSYFSEELIDEIATNPKVCKYIDIPLQHISNLTLLGMNRPPQAHTV-ALLHKLR 141 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P +A+ + FI GFPGE++ D R +D + + F+YS GTP + + +Q+ Sbjct: 142 ERIPGLALRTTFISGFPGESEADHRELVDFCSSFRFERMGCFQYSEEDGTPAAELPDQLP 201 Query: 384 ENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 + V+ R L+ LQ+++ E+ + + VGQ +EVL++ H E G++ GR+ W Sbjct: 202 QEVREARRDELISLQQRVGEE---WARSLVGQEVEVLVDGH-TEDGEVYGRTQW 251 >gi|331005430|ref|ZP_08328810.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC1989] gi|330420763|gb|EGG95049.1| tRNA-i(6)A37 methylthiotransferase [gamma proteobacterium IMCC1989] Length = 184 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 2/166 (1%) Query: 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 +M R HT EY+ + ++ +RPDI+ SSDFI+GFPGET+ DF TM+L+ + + +FS Sbjct: 2 AMKRGHTVLEYKSKLRALKKIRPDISFSSDFIIGFPGETEQDFLGTMNLIQDMNFDMSFS 61 Query: 365 FKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-K 423 F YS R GTP +++ + E +K +RL LQ ++ +Q + VG + VLI + K Sbjct: 62 FVYSARPGTPAADLPDDTPEEIKKQRLKILQDRINQQSFDISRKMVGNVERVLITGYSKK 121 Query: 424 EKGKLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDVKISTLYGELV 468 + G+L GR+ + V N IG + + I + ++L G LV Sbjct: 122 DPGQLSGRTENNRIVNFRCDNAELIGKFVDIDIQEALPNSLRGVLV 167 >gi|196019608|ref|XP_002119009.1| hypothetical protein TRIADDRAFT_62979 [Trichoplax adhaerens] gi|190577345|gb|EDV18505.1| hypothetical protein TRIADDRAFT_62979 [Trichoplax adhaerens] Length = 267 Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 112/210 (53%), Gaps = 5/210 (2%) Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 FC++PY RG S + +++ A+ L+D G E+ L G ++ + G L G K + +++ Sbjct: 9 FCIIPYGRGNSRSVPVGEIIKYAQNLVDKGYKELVLTGVDITDY-GLDLPG-KPSLGNMI 66 Query: 252 YSLSE-IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 L + + + RLR ++ ++ D L MP+LHL +Q+G D ILK M RRH Sbjct: 67 NRLFKMVPDIKRLRLSSIDVAEIDDELFDIIIHEPKFMPHLHLSLQAGDDMILKRMKRRH 126 Query: 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 + + I RP I + +D I GFP ETD+ F T DL++++ F YSPR Sbjct: 127 RRQQVIDFCNEIWKYRPQIVLGADVIAGFPTETDEMFNNTYDLIEQLKIVHLHVFPYSPR 186 Query: 371 LGTPGSNMLEQVDENVK--AERLLCLQKKL 398 TP + M + E +K A++L L++KL Sbjct: 187 DNTPAARMPQVKSEVIKDRAKKLRDLKQKL 216 >gi|48477501|ref|YP_023207.1| oxidoreductase [Picrophilus torridus DSM 9790] gi|48430149|gb|AAT43014.1| hypothetical oxidoreductase [Picrophilus torridus DSM 9790] Length = 426 Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 96/357 (26%), Positives = 164/357 (45%), Gaps = 47/357 (13%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 I + + +SYGC + ++ + G E V+ + AD+ V+ TC + + + + Sbjct: 24 IKSMKVYFESYGCTLEKSEAALYVNKMLQDGGELVDDPERADVSVIGTCVVIKHTEDHML 83 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNV-VVGPQTYYRLPELL 140 +G + K SR V+V GC+A G + N+ V+ P+ + Sbjct: 84 KRIGELS--KKSR-------NVLVLGCLATVNGNTLESE----NIRVIKPREF------- 123 Query: 141 ERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 R+ + + D K + SI+DG + I +GC C FC+ +RG Sbjct: 124 -RSFYTGTLDDV------KIKEPSILDG-----------IPINQGCTGHCNFCISHISRG 165 Query: 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 +SRS ++V + R I++G+ EI + + A+ GK ++ + +DL+ S++ + Sbjct: 166 KLLSRSPEKIVGQVRMQIESGIREIRITSLDTAAY-GKDINTD---LADLINSITGLDVD 221 Query: 261 VRLRYTTSHPRDMSDCL---IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 LR PR+ D L I A+ + D + +LHLPVQSG +RIL SMNR + E Sbjct: 222 FMLRVGMMEPRNTYDILEKLIDAYKN-DKVFKFLHLPVQSGDNRILDSMNREYKIEEAGH 280 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +I R + PD+ S+D I G+ E + T ++ ++SPR TP Sbjct: 281 VIKRFKEEFPDMVFSTDIIAGYYTEDSESMENTYKFIETYMPDIINITRFSPRPYTP 337 >gi|308182893|ref|YP_003927020.1| 2-methylthioadenine synthetase [Helicobacter pylori PeCan4] gi|308065078|gb|ADO06970.1| 2-methylthioadenine synthetase [Helicobacter pylori PeCan4] Length = 439 Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 98/394 (24%), Positives = 181/394 (45%), Gaps = 31/394 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M ++ Y N AD+I++NTC E A ++ I+ + Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N+ + +++ +GC+++ +EI P V++ G Y ++ L+ + Sbjct: 65 LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------- 117 Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 172 LDSILKEVENLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARIL 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI A D V Y +P+Q SD +LK M R + + +++D ++ V+ Sbjct: 230 YLYPSSTTLELIGAIEDSPVFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 I S IVG P E + +F +D+ + + F +S T + LE+V + + Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSMFLDEFQFDRLNIFAFSAEENTHAYS-LEKVPKKI 347 Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 348 INARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380 >gi|307637422|gb|ADN79872.1| Ribosomal protein S12p Asp88 methyl thio transferase [Helicobacter pylori 908] gi|325996012|gb|ADZ51417.1| Ribosomal protein S12p methylthiotransferase/Ribosome maturation factor [Helicobacter pylori 2018] gi|325997607|gb|ADZ49815.1| Ribosomal protein S12p methylthiotransferase [Helicobacter pylori 2017] Length = 439 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 101/400 (25%), Positives = 184/400 (46%), Gaps = 33/400 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 S GC N+ DS M ++ Y N AD+I++NTC E A E + + L ++ Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDAKKADVILINTCGFIESAKQESIQTILNAAKD 70 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K EG +++ +GC+++ +EI P V++ G Y ++ L+ + Sbjct: 71 KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------ 117 Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 171 ELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSARI 228 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + LI A D + Y +P+Q SD +LK M R + + +++D ++ V Sbjct: 229 LYLYPSSTTLELIGAIEDSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV 288 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 + I S IVG P E + +F +D+ + + F +S T + LE+V + Sbjct: 289 KESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKK 346 Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIEKHGKE 424 + R+ L K L+ Q SF A + + I+ L+E+ E Sbjct: 347 IINARIKALNKIALKHQNHSFK-ALLNKPIKALVERKEGE 385 >gi|213416843|ref|ZP_03349987.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 187 Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 94/152 (61%), Gaps = 1/152 (0%) Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 II ++R+ RPDI ISSDFIVGFPGET DDF TM L+ + + ++SF +S R GTP ++ Sbjct: 2 IIRKLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAAD 61 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQ 436 M++ V E K +RL LQ+++ +Q ++++ +G +L+E ++ +L GR+ + Sbjct: 62 MVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNR 121 Query: 437 SVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V IG + V ITDV ++L G++V Sbjct: 122 VVNFEGTPEMIGKFVDVEITDVYPNSLRGKVV 153 >gi|238022285|ref|ZP_04602711.1| hypothetical protein GCWU000324_02192 [Kingella oralis ATCC 51147] gi|237866899|gb|EEP67941.1| hypothetical protein GCWU000324_02192 [Kingella oralis ATCC 51147] Length = 164 Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 1/164 (0%) Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R +TA EY+ II ++R++RPD+ +SSDFIVGFPGET+ +F T+ LV I + +F F Sbjct: 1 MKRGYTALEYKSIIRKLRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVF 60 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK-HGKE 424 YSPR GTP +N+ + K RL L + + + N +G + L+E K+ Sbjct: 61 IYSPRPGTPAANLPDDTPHEEKVRRLEALNEVIEAETARINQTMLGTVQRCLVEGISKKD 120 Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +L R+ + V I ++++ ITD + +L GELV Sbjct: 121 PDQLQARTANNRVVNFYGDVSLINQMVEIEITDARTFSLSGELV 164 >gi|154149538|ref|YP_001406090.1| hypothetical protein CHAB381_0502 [Campylobacter hominis ATCC BAA-381] gi|238065316|sp|A7I0P9|RIMO_CAMHC RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|153805547|gb|ABS52554.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381] Length = 433 Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 87/366 (23%), Positives = 176/366 (48%), Gaps = 22/366 (6%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + F++S GC N+ DS M + +E + +AD++++NTC A ++ + Sbjct: 3 KVFLQSLGCNKNLVDSEIMLGAL--RDFEVTDIPKEADVLIVNTCGFINSAKQESIRAI- 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 L+ I++ G +L V GC+ Q +E+++ P V++ G + + +++ Sbjct: 60 ----LELCEIRKKGSILAV-TGCLMQRYKDELIKELPDVDIFSGVGDFGEIDKMIA---- 110 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 GK +D + K E I ++ A++ I EGC++ C+FC +P +G SR Sbjct: 111 GKLSKFSDETFLQKNENRVITGTNFH------AYIKISEGCNQKCSFCAIPSFKGRLKSR 164 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 + +V E L++ G + + + Q+ +++ G+ + G K L+ + +I G+ R Sbjct: 165 DIQNIVSEVEMLVERGYYDFSFIAQDTSSF-GRDI-GLKNGLISLIKEIEKINGVKIARI 222 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + L++ D V + Y +P+Q +D +LK M R + E +++ +R+ Sbjct: 223 LYLYPTTTNKELLQVIIDSPVFVNYFDMPIQHINDEMLKIMKRGNGKAEILELLQTMRAA 282 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 + + + IVG PGE+++ F + + + + F YS T M +Q+ +N Sbjct: 283 KNSF-LRTGIIVGHPGESEEYFDELCRFLQEFKFDRISVFAYSKEEDTASFEM-KQIPQN 340 Query: 386 VKAERL 391 + +RL Sbjct: 341 IIKKRL 346 >gi|317177437|dbj|BAJ55226.1| hypothetical protein HPF16_0629 [Helicobacter pylori F16] Length = 439 Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 181/394 (45%), Gaps = 31/394 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M ++ Y N AD+I++NTC E A ++ I+ + Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N+ + +++ +GC+++ +EI P V++ G Y ++ ++ + Sbjct: 65 LNAAKDKKRGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117 Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++ E L+ G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 172 LDSILKEVENLVLKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSARIL 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI A + Y +P+Q SD +LK M R + + +++D ++ V+ Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 I S IVG P E + +F +D+ + + F +S T + LE+V + + Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347 Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380 >gi|317178909|dbj|BAJ56697.1| hypothetical protein HPF30_0600 [Helicobacter pylori F30] Length = 439 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 96/394 (24%), Positives = 183/394 (46%), Gaps = 31/394 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M ++ Y N AD+I++NTC E A ++ I+ + Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N+ + +++V+GC+++ +EI P V++ G Y ++ ++ + Sbjct: 65 LNAAKDKKRGAILIVSGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117 Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++ E L+ G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 172 LDSILKEVENLVLKGYRDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSARIL 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI A + Y +P+Q SD +LK M R + + +++D ++ V+ Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 + I S IVG P E + +F +D+ + + F +S T + LE+V + + Sbjct: 290 -ECFIRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347 Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380 >gi|109947260|ref|YP_664488.1| putative 2-methylthioadenine synthetase [Helicobacter acinonychis str. Sheeba] gi|123066258|sp|Q17XY7|RIMO_HELAH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|109714481|emb|CAJ99489.1| putative 2-methylthioadenine synthetase [Helicobacter acinonychis str. Sheeba] Length = 438 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 96/394 (24%), Positives = 182/394 (46%), Gaps = 31/394 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M ++ Y N AD+I++NTC E A ++ I+ + Sbjct: 12 SLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQE------SIQTI 63 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N+ + L++ +GC+++ +EI P V++ G Y ++ L+ + Sbjct: 64 LNAAKDKKEGTLLIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------- 116 Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 117 ------QNQFSEQVFLSEHYNARVITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLHSRE 170 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++ E L+ G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 171 LDSILKEVEDLVLKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALRSARIL 228 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI A + + Y +P+Q SD +LK M R + + ++++ ++ V+ Sbjct: 229 YLYPSSTTLELIGAIENSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQVQ 288 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 I S IVG P E + +F +D+ + + F +S T + LE+V + + Sbjct: 289 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFQFDRLNIFAFSAEENTHAYS-LEKVPKKI 346 Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 347 INARIKALNKIALKHQHNSFK-ALLNKPIKALVE 379 >gi|188527423|ref|YP_001910110.1| hypothetical protein HPSH_03170 [Helicobacter pylori Shi470] gi|238066306|sp|B2UT98|RIMO_HELPS RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|188143663|gb|ACD48080.1| hypothetical protein HPSH_03170 [Helicobacter pylori Shi470] Length = 439 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 180/394 (45%), Gaps = 31/394 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M ++ Y N AD+I++NTC E A ++ I+ + Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N+ + +++ +GC+++ +EI P V++ G Y ++ ++ + Sbjct: 65 LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117 Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++ EA L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 172 LDSILKEAENLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSARIL 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI + Y +P+Q SD +LK M R + + +++D ++ V+ Sbjct: 230 YLYPSSTTLELISTIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 I S IVG P E + +F +D+ + + F +S T + LE+V + + Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347 Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380 >gi|317014146|gb|ADU81582.1| hypothetical protein HPGAM_03795 [Helicobacter pylori Gambia94/24] Length = 439 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 100/395 (25%), Positives = 182/395 (46%), Gaps = 33/395 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 S GC N+ DS M ++ Y N AD+I++NTC E A E + + L ++ Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDAKKADVILINTCGFIESAKQESIQTILNAAKD 70 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K EG +++ +GC+++ +EI P V++ G Y ++ L+ + Sbjct: 71 KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------ 117 Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 171 ELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSARI 228 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + LI A D V Y +P+Q SD +LK M R + + ++++ ++ V Sbjct: 229 LYLYPSSTTLELIGAIEDSPVFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQV 288 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 + I S IVG P E + +F +D+ + + F +S T + LE+V + Sbjct: 289 KESF-IRSTIIVGHPEENEGEFEELSAFLDEFQFDRLNIFAFSAEESTHAYS-LEKVPKK 346 Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 + R+ L K L+ Q SF A + + I+ L+E Sbjct: 347 IINARIKVLNKIALKHQNHSFK-ALLNKPIKALVE 380 >gi|297379931|gb|ADI34818.1| MiaB-like tRNA modifying enzyme YliG [Helicobacter pylori v225d] Length = 439 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 96/399 (24%), Positives = 181/399 (45%), Gaps = 31/399 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M ++ Y N AD+I++NTC E A ++ I+ + Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N+ + +++ +GC+++ +EI P V++ G Y ++ ++ + Sbjct: 65 LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117 Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 172 LDSILKEVEDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARIL 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI A + Y +P+Q SD +LK M R + + +++D ++ V+ Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 I S IVG P E + +F +D+ + + F +S T + LE+V + + Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347 Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIEKHGKE 424 R+ L K L+ Q SF A + + I+ L+E E Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVENKESE 385 >gi|15611738|ref|NP_223389.1| hypothetical protein jhp0671 [Helicobacter pylori J99] gi|81625904|sp|Q9ZLA9|RIMO_HELPJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|4155233|gb|AAD06255.1| putative [Helicobacter pylori J99] Length = 439 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 99/395 (25%), Positives = 182/395 (46%), Gaps = 33/395 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 S GC N+ DS M ++ Y N AD+I++NTC E A E + + L ++ Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDAKKADVILINTCGFIESAKQESIQTILNAAKD 70 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K EG +++ +GC+++ +EI P V++ G Y ++ L+ + Sbjct: 71 KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------ 117 Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 171 ELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARI 228 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + LI A D + Y +P+Q SD +LK M R + + ++++ ++ V Sbjct: 229 LYLYPSSTTLELIGAIEDSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQV 288 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 + I S IVG P E + +F +D+ + + F +S T + LE+V + Sbjct: 289 KESF-IRSTIIVGHPEENESEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKK 346 Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 + R+ L K L+ Q SF A + + I+ L+E Sbjct: 347 IINARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380 >gi|156337861|ref|XP_001619903.1| hypothetical protein NEMVEDRAFT_v1g149881 [Nematostella vectensis] gi|156203943|gb|EDO27803.1| predicted protein [Nematostella vectensis] Length = 202 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 105/209 (50%), Gaps = 17/209 (8%) Query: 186 CDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245 C CT+C + RG S ++V+ A++ + GV E+ L ++ A+ GK + Sbjct: 1 CLNQCTYCKTKHARGDLGSYPPEEIVNRAKQAFNEGVVEMWLTSEDTGAY-GKDIG---V 56 Query: 246 TFSDLLYSLSEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297 T +LL+ L ++ G+ Y H +M+ L + +LH+PVQS Sbjct: 57 TLPELLWQLVKVIPEGGRMRIGMTNPPYILEHLEEMAKILNHPR-----VYSFLHVPVQS 111 Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 S +L M R + A ++ +++ +R PD+ I++D I GFP ET+DDF+ T+DLV K Sbjct: 112 ASTNVLADMKREYIAEDFEHVVNYLRQRVPDLTIATDLICGFPTETEDDFQKTLDLVKKY 171 Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 + F ++ PR GTP + M E V Sbjct: 172 KFPSLFINQFYPRPGTPAARMKRLPTEEV 200 >gi|317182043|dbj|BAJ59827.1| hypothetical protein HPF57_0753 [Helicobacter pylori F57] Length = 439 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 180/394 (45%), Gaps = 31/394 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M ++ Y N AD+I++NTC E A ++ I+ + Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQE------SIQTI 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N+ + +++ +GC+++ +EI P V++ G Y ++ ++ + Sbjct: 65 LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117 Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 172 LDSILKEVEDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSTRIL 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI A + Y +P+Q SD +LK M R + + +++D ++ V+ Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 I S IVG P E + +F +D+ + + F +S T + LE+V + + Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347 Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380 >gi|308063481|gb|ADO05368.1| hypothetical protein HPSAT_03125 [Helicobacter pylori Sat464] Length = 439 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 181/394 (45%), Gaps = 31/394 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M ++ Y N AD+I++NTC E A ++ I+ + Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N+ + +++ +GC+++ +EI P V++ G Y ++ ++ + Sbjct: 65 LNAAKDKKRGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117 Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++ E + L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 172 LDSILKEVQDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSARIL 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI A + Y +P+Q SD +LK M R + + +++D ++ V+ Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 I S IVG P E + +F +D+ + + F +S T + LE+V + + Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347 Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380 >gi|261838033|gb|ACX97799.1| hypothetical protein KHP_0592 [Helicobacter pylori 51] Length = 439 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 96/399 (24%), Positives = 181/399 (45%), Gaps = 31/399 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M ++ Y N AD+I++NTC E A ++ I+ + Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N+ + +++ +GC+++ +EI P V++ G Y ++ ++ + Sbjct: 65 LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117 Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 172 LDSILKEVEDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSGRIL 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI A + Y +P+Q SD +LK M R + + +++D ++ V+ Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 I S IVG P E + +F +D+ + + F +S T + LE+V + + Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVSKKI 347 Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIEKHGKE 424 R+ L K L+ Q SF A + + I+ L+E E Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVENKESE 385 >gi|317010954|gb|ADU84701.1| putative 2-methylthioadenine synthetase [Helicobacter pylori SouthAfrica7] Length = 438 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 96/394 (24%), Positives = 181/394 (45%), Gaps = 31/394 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M ++ Y N +AD+I++NTC E A ++ I+ + Sbjct: 12 SLGCSKNLVDSEVMLGKLYN--YTLTNDAKNADVILINTCGFIESAKQE------SIQTI 63 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N+ + L++ +GC+++ +EI P V++ G Y ++ L+ + Sbjct: 64 LNAAKDKKKGALLIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------- 116 Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 117 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLHSRE 170 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 171 LDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSARIL 228 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI A + Y +P+Q SD +LK M R + + ++++ ++ V+ Sbjct: 229 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQVQ 288 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 I S IVG P E + +F +D+ + + F +S T + LE+V + + Sbjct: 289 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFQFDRLNIFAFSAEENTHAYS-LEKVPKKI 346 Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 347 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 379 >gi|257076152|ref|ZP_05570513.1| oxidoreductase [Ferroplasma acidarmanus fer1] Length = 400 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 114/426 (26%), Positives = 198/426 (46%), Gaps = 63/426 (14%) Query: 26 RFFVKSYGCQMNVYDS-LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + + +SYGC + +S L + + + + VNS ++ADL ++ TC + + +++ + Sbjct: 2 KIYFESYGCTLQKSESSLYLNKLLKDENNQIVNSPEEADLSLIGTCVVIKHTEDRM---V 58 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 RI +L K G+ V V GC+A G I S V V+ P+ + E Sbjct: 59 KRISSLS----KVSGN--VQVLGCLATVNGNTI--ESGNVQVL-KPREFRSFYE------ 103 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 D D +E K + I DG + I +GC C FC+ RG +S Sbjct: 104 -----GDLD-GIEIKSD---IYDG-----------IPINQGCTGSCNFCISHIARGKLLS 143 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLR 264 R + ++V++ +D + EI + + A+ GK + + ++L+ +S I LR Sbjct: 144 RGIDKIVNQVNMELDRNIKEIRISSLDTAAY-GKDIGTD---LAELVNRISSIDRDFYLR 199 Query: 265 YTTSHPR---DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 PR D+ D L+ A+ D + +LHLPVQS + +L +MNR +T E + + Sbjct: 200 VGMLEPRNTYDILDKLVDAYRH-DRVFKFLHLPVQSAENNVLSAMNREYTIEEAEAVWQK 258 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP------- 374 PD++I++D I+G+ ++ F TM ++K ++SPR T Sbjct: 259 FHDAFPDMSIATDIILGYYNDSRAGFEKTMKFLEKYNPDIINVTRFSPRPYTKDYNKTPL 318 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 SN+L++ + + ++KKL D+ +G+ +VLI + GK G +VGR Sbjct: 319 NSNLLKEWSNEIISLHREQMEKKL--------DSYLGREEKVLITEKGK-NGTMVGRDIN 369 Query: 435 LQSVVL 440 + VVL Sbjct: 370 YRPVVL 375 >gi|68249225|ref|YP_248337.1| 2-methylthioadenine synthetase [Haemophilus influenzae 86-028NP] gi|68057424|gb|AAX87677.1| predicted 2-methylthioadenine synthetase [Haemophilus influenzae 86-028NP] Length = 218 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 120/215 (55%), Gaps = 17/215 (7%) Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 VRL Y +P D LI D L+PYL +P+Q S +ILK+M R + + I Sbjct: 9 VRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHASPKILKAMKRPGSIDRTLERIK 65 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + R + PD+ + S FIVGFPGET++DF+ +D + + + FK+SP G P ++M + Sbjct: 66 QWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAPATDMAD 125 Query: 381 QVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PW 434 QV E+VK ER + +Q++S N +G+ ++VL+++ ++ ++GRS P Sbjct: 126 QVPEDVKEERFHRFMQ--LQQEISANRLKQKIGKTLDVLVDE--IDEDGIIGRSKADAPE 181 Query: 435 LQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 + +V L+ N +GD+IKV IT+ L+G Sbjct: 182 VDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 216 >gi|317180496|dbj|BAJ58282.1| hypothetical protein HPF32_0700 [Helicobacter pylori F32] Length = 439 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 181/394 (45%), Gaps = 31/394 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M ++ Y N AD+I++NTC E A ++ I+ + Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N+ + +++ +GC+++ +EI P V++ G Y ++ ++ + Sbjct: 65 LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117 Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++ EA L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 172 LDSILKEAENLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSARIL 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI A + Y +P+Q SD +LK M R + + ++++ ++ V+ Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQVK 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 I S IVG P E + +F +D+ + + F +S T + LE+V + + Sbjct: 290 ESF-IRSTIIVGHPEENESEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347 Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 348 INARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380 >gi|15645354|ref|NP_207528.1| hypothetical protein HP0734 [Helicobacter pylori 26695] gi|81555823|sp|O25434|RIMO_HELPY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|2313856|gb|AAD07780.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 439 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 98/395 (24%), Positives = 180/395 (45%), Gaps = 33/395 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 S GC N+ DS M ++ Y N AD+I++NTC E A E + + L ++ Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K EG +++ +GC+++ +EI P V++ G Y ++ ++ + Sbjct: 71 KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------ 117 Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 171 ELDSILKEVENLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARI 228 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + LI A + Y +P+Q SD +LK M R + + +++D ++ V Sbjct: 229 LYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV 288 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 + I S IVG P E + +F +D+ + + F +S T + LE+V + Sbjct: 289 KESF-IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYS-LEKVPKK 346 Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 347 TINARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380 >gi|332673464|gb|AEE70281.1| possible 2-methylthioadenine synthetase [Helicobacter pylori 83] Length = 451 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 181/394 (45%), Gaps = 31/394 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M ++ Y N AD+I++NTC E A ++ I+ + Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQE------SIQTI 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N+ + +++ +GC+++ +EI P V++ G Y ++ ++ + Sbjct: 65 LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117 Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 172 LDSILKEVEDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSARIL 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI A + Y +P+Q SD +LK M R + + +++D ++ V+ Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 + I S IVG P E + +F +D+ + + F +S T + LE+V + + Sbjct: 290 -ECFIRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347 Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380 >gi|322379439|ref|ZP_08053809.1| Radical SAM [Helicobacter suis HS1] gi|322380950|ref|ZP_08055016.1| MiaB-like rRNA/tRNA modification protein [Helicobacter suis HS5] gi|321146622|gb|EFX41456.1| MiaB-like rRNA/tRNA modification protein [Helicobacter suis HS5] gi|321148148|gb|EFX42678.1| Radical SAM [Helicobacter suis HS1] Length = 419 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 112/454 (24%), Positives = 209/454 (46%), Gaps = 43/454 (9%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 ++ Q+ + K++GC+ N++D+ M + + +E N ++A +I+LN+C + A Sbjct: 1 MMKQKVYFKTFGCRTNLFDTQVM--LAHLKDFETTNHEEEAQIIILNSCTVTNDADYSAR 58 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 S+ + L V GC A +G ++ + + V G + LL+ Sbjct: 59 SYAKKATRLGKK---------VYFTGCGANTQGLQLFQNGHVFGVF-GHDHKEEINALLQ 108 Query: 142 RARFGKRVVDTDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + + EDK E L ++ + R AF+ IQEGCD C++C++P R Sbjct: 109 EKQ--------GFFHEDKQECLDQILLSNFVGKTR---AFVKIQEGCDFRCSYCIIPTVR 157 Query: 200 GIEISRSLSQ--VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 G SRSL+Q V+ + L GV E+ L G NV ++ GLD + L+ ++++ Sbjct: 158 G--QSRSLNQDHVLKQIEMLSQAGVLEVVLTGTNVGSY---GLD-RGTNLAHLILKIADL 211 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 + R+R + P ++ ++ D +L +LH+ +Q D +L+ M RR+ + Sbjct: 212 TPIKRVRIGSLEPSQINTEFLEL-LDHPILERHLHIALQHSHDNMLRRMRRRNRVGSDIK 270 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 ++++I S AI +DFIVG P E + ++ + ++ F YS R TP S Sbjct: 271 LLEKIAS--KGFAIGTDFIVGHPYEDELTWQEALLNFKQLPLTHIHPFIYSVRDNTPSSK 328 Query: 378 ML--EQVDENVKAERLLCLQKKLREQQVSFNDACVG--QIIEVLIEKHGKEKGKLVGRSP 433 M +V N+ RL ++ + Q ++F +++EV++E + G Sbjct: 329 MPLNARVPGNIAKTRLDQIKTHVIAQNLAFRQQLKANREVLEVIVENFKAPYYR--GYDQ 386 Query: 434 WLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 + V + SK N+ ++ + +V+ Y L Sbjct: 387 YFNPVKILSKQ-NLQGLVYLNTYEVRADANYATL 419 >gi|254779289|ref|YP_003057394.1| hypothetical protein HELPY_0633 [Helicobacter pylori B38] gi|254001200|emb|CAX29166.1| Conserved hypothetical protein [Helicobacter pylori B38] Length = 439 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 99/395 (25%), Positives = 181/395 (45%), Gaps = 33/395 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 S GC N+ DS M ++ Y N AD+I++NTC E A E + + L ++ Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDAKKADVILINTCGFIESAKQESIQTILNAAKD 70 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K EG +++ +GC+++ +EI P V++ G Y ++ L+ + Sbjct: 71 KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------ 117 Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 171 ELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSARI 228 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + LI D + Y +P+Q SD +LK M R + + +++D ++ V Sbjct: 229 LYLYPSSTTLELIGTIEDSLIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV 288 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 + I S IVG P E + +F +D+ + + F +S T + LE+V + Sbjct: 289 KESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKK 346 Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 + R+ L K L+ Q SF A + + I+ L+E Sbjct: 347 IINARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380 >gi|261839446|gb|ACX99211.1| hypothetical protein HPKB_0614 [Helicobacter pylori 52] Length = 439 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 180/394 (45%), Gaps = 31/394 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M ++ Y N AD+I++NTC E A ++ I+ + Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N+ + +++ +GC+++ +EI P V++ G Y ++ ++ + Sbjct: 65 LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117 Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 172 LDSILKEVENLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSGRIL 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI A + Y +P+Q SD +LK M R + + +++D ++ V+ Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 I S IVG P E + +F +D+ + + F +S T + LE+V + + Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347 Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380 >gi|317012545|gb|ADU83153.1| hypothetical protein HPLT_03685 [Helicobacter pylori Lithuania75] Length = 439 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 99/395 (25%), Positives = 180/395 (45%), Gaps = 33/395 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 S GC N+ DS M ++ Y N AD+I++NTC E A E + + L ++ Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K EG +++ +GC+++ +EI P V++ G Y ++ L+ + Sbjct: 71 KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------ 117 Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 171 ELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARI 228 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + LI A + Y +P+Q SD +LK M R + + +++D ++ V Sbjct: 229 LYLYPSSTTLELISAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV 288 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 + I S IVG P E + +F +D+ + + F +S T + LE+V + Sbjct: 289 KESF-IRSTIIVGHPEENEGEFEELSAFLDEFCFDRLNIFAFSAEENTHAYS-LEKVPKK 346 Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 347 TINARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380 >gi|224419273|ref|ZP_03657279.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT 98-5491] Length = 192 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 110/183 (60%), Gaps = 5/183 (2%) Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350 +H+P+QSGS +IL+ M R ++ + + ++R++ PD++I +D IVGFP E+++DF T Sbjct: 10 IHMPLQSGSTKILQKMKRGYSKEWFLDRVAKMRALIPDLSIGTDIIVGFPTESEEDFLDT 69 Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSF 405 +D+++K+ + +SF YS R T + L+ +DE + RL+ L+ + +E Sbjct: 70 LDVLEKVRFDTLYSFIYSTRPHTQAATWLDNGEIQLLDEEIAKNRLMILKDRHKEILAQE 129 Query: 406 NDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYG 465 N +G+I VL E + +E L GRS + + + + + IG+I V+I+++K + L G Sbjct: 130 NAKQLGKIHPVLFESYDEENFLLEGRSDTNKLIRVKAGRNLIGEICNVKISEIKGAQLIG 189 Query: 466 ELV 468 EL+ Sbjct: 190 ELL 192 >gi|108563143|ref|YP_627459.1| hypothetical protein HPAG1_0718 [Helicobacter pylori HPAG1] gi|122386488|sp|Q1CTD7|RIMO_HELPH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|107836916|gb|ABF84785.1| hypothetical protein HPAG1_0718 [Helicobacter pylori HPAG1] Length = 439 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 99/395 (25%), Positives = 180/395 (45%), Gaps = 33/395 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 S GC N+ DS M ++ Y N AD+I++NTC E A E + + L ++ Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K EG +++ +GC+++ +EI P V++ G Y ++ L+ + Sbjct: 71 KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------ 117 Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 171 ELDSILKEVENLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSARI 228 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + LI A + Y +P+Q SD +LK M R + + +++D ++ V Sbjct: 229 LYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV 288 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 + I S IVG P E + +F +D+ + + F +S T + LE+V + Sbjct: 289 KESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKK 346 Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 347 TINARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380 >gi|148827825|ref|YP_001292578.1| 2-methylthioadenine synthetase [Haemophilus influenzae PittGG] gi|148719067|gb|ABR00195.1| predicted 2-methylthioadenine synthetase [Haemophilus influenzae PittGG] Length = 218 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 119/215 (55%), Gaps = 17/215 (7%) Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 VRL Y +P D LI D L+PYL +P+Q S +ILK+M R + + I Sbjct: 9 VRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHASPKILKAMKRPGSIDRTLERIK 65 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + R + PD+ + S FIVGFPGET++DF+ +D + + + FK+SP G P + M + Sbjct: 66 QWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAPATEMAD 125 Query: 381 QVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PW 434 QV E+VK ER + +Q++S N +G+ ++VL+++ ++ ++GRS P Sbjct: 126 QVPEDVKEERFHRFMQ--LQQEISANRLKQKIGKTLDVLVDE--IDEDGIIGRSKADAPE 181 Query: 435 LQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 + +V L+ N +GD+IKV IT+ L+G Sbjct: 182 VDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 216 >gi|210134936|ref|YP_002301375.1| 2-methylthioadenine synthetase [Helicobacter pylori P12] gi|238066300|sp|B6JLW7|RIMO_HELP2 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|210132904|gb|ACJ07895.1| 2-methylthioadenine synthetase [Helicobacter pylori P12] Length = 439 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 180/394 (45%), Gaps = 31/394 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M ++ Y N AD+I++NTC E A ++ I+ + Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQE------SIQTI 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N+ + +++ +GC+++ +EI P V++ G Y ++ ++ + Sbjct: 65 LNAAKDKKRGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117 Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L+ ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 172 LNSILKEVENLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLISAIDKQQALKSARIL 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI A + Y +P+Q SD +LK M R + + +++D ++ V+ Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 I S IVG P E + +F +D+ + + F +S T + LE+V + Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFQFDRLNIFAFSAEENTHAYS-LEKVPKKT 347 Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 348 INARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380 >gi|332296138|ref|YP_004438061.1| RNA modification enzyme, MiaB family [Thermodesulfobium narugense DSM 14796] gi|332179241|gb|AEE14930.1| RNA modification enzyme, MiaB family [Thermodesulfobium narugense DSM 14796] Length = 398 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 99/387 (25%), Positives = 175/387 (45%), Gaps = 60/387 (15%) Query: 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 I+ ++ F + GC+++ D + +++FF E V S +D+I+L++C + E A ++ Sbjct: 2 ILNKKVFSLALGCKVSQADLAKFKELFFPNYTEEV-SASLSDVIILSSCAVTENAQKESI 60 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 L + L + GC A Y L +L Sbjct: 61 RILKKFSKLNKQ---------IYFLGCAVTA--------------------YENLKKL-- 89 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 F + + + +E+ I+ + RKR + L + +GC + CT+C++ Y RG Sbjct: 90 ---FPQVIFFNNKELEELLSNKVIISNYHGRKRYI---LKVGDGCCRECTYCIIRYLRGP 143 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL 260 SR + E L+ V EI L + W GL ++++ L +I L Sbjct: 144 LRSRPFEDIKKEI--LMLRNVDEIVLSAIELALWGHDFGL--------NIVWLLDQIVRL 193 Query: 261 V-----RLRYTTSHPR-DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 + ++R + +P ++ + + + + P+LHL +QS S +LKSM R + Sbjct: 194 LDNNNTKIRLGSIYPALLLNKEFVNFIANSNKIQPHLHLSLQSASPDVLKSMKRFTNVDK 253 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 I IR R + +S+D IVG+P E+D DF+ T+D +DK+ + SF +S R GT Sbjct: 254 VLDKIFEIRDKRDNFLVSTDIIVGYPTESDRDFQMTIDFLDKLPLVRVHSFPFSARKGTV 313 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQ 401 L+ +D+ + ER QKK+ E+ Sbjct: 314 AFQ-LKPLDKKIILER----QKKVTER 335 >gi|308062055|gb|ADO03943.1| hypothetical protein HPCU_03915 [Helicobacter pylori Cuz20] Length = 439 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 94/394 (23%), Positives = 181/394 (45%), Gaps = 31/394 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M ++ Y N AD+I++NTC E A ++ I+ + Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N+ + +++ +GC+++ +EI P V++ G Y ++ ++ + Sbjct: 65 LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117 Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++ E + L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 172 LDSILKEVQDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSARIL 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI A + Y +P+Q SD +LK M R + + ++++ ++ V+ Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQVK 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 I S IVG P E + +F +D+ + + F +S T + LE+V + + Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347 Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380 >gi|298736436|ref|YP_003728962.1| hypothetical protein HPB8_941 [Helicobacter pylori B8] gi|298355626|emb|CBI66498.1| conserved hypothetical protein [Helicobacter pylori B8] Length = 439 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 98/395 (24%), Positives = 181/395 (45%), Gaps = 33/395 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 S GC N+ DS M ++ Y N AD+I++NTC E A E + + L ++ Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDAKKADVILINTCGFIESAKQESIQTILNAAKD 70 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K EG +++ +GC+++ +EI P V++ G Y ++ ++ + Sbjct: 71 KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------ 117 Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 171 ELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARI 228 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + LI A + Y +P+Q SD +LK M R + + +++D ++ V Sbjct: 229 LYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV 288 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 + I S IVG P E + +F +D+ + + F +S T + LE+V + Sbjct: 289 KESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKK 346 Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 + R+ L K L+ Q SF A + + I+ L+E Sbjct: 347 IINARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380 >gi|153840611|ref|ZP_01993278.1| 2-methylthioadenine synthetase [Vibrio parahaemolyticus AQ3810] gi|149745726|gb|EDM56856.1| 2-methylthioadenine synthetase [Vibrio parahaemolyticus AQ3810] Length = 436 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 1/154 (0%) Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 EY+ II ++R RPDI ISSDFIVGFPGETD DF+ TM L+ + + +FSF +SPR GT Sbjct: 1 EYKSIIRKLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGT 60 Query: 374 PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRS 432 P ++ + E VK ERL LQ+ + Q + ++ + VL+E K+ +L R+ Sbjct: 61 PAADYPCDIPEQVKKERLYELQQTINAQAMRYSRLMLATEQRVLVEGPSKKNLMELRART 120 Query: 433 PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGE 466 + V IG + V+ITDV ++L G+ Sbjct: 121 ENNRVVNFEGSADLIGQFVDVKITDVFANSLRGD 154 >gi|329911496|ref|ZP_08275547.1| tRNA-i(6)A37 methylthiotransferase [Oxalobacteraceae bacterium IMCC9480] gi|327545868|gb|EGF30979.1| tRNA-i(6)A37 methylthiotransferase [Oxalobacteraceae bacterium IMCC9480] Length = 113 Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 5/114 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ F+K++GCQMN YDS +M D+ + G + ++ +DAD+I+LNTC +REKA EKV+S Sbjct: 3 KKVFIKTFGCQMNEYDSDKMADVLNATHGMFKTDTPEDADVILLNTCSVREKAQEKVFSD 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLP 137 LGRIR LK + DL++ V GCVA EG I++R+P V+VV GPQ P Sbjct: 63 LGRIRELKLLK----PDLVIGVGGCVASQEGAAIIKRAPYVDVVFGPQRCTACP 112 >gi|315586597|gb|ADU40978.1| possible 2-methylthioadenine synthetase [Helicobacter pylori 35A] Length = 439 Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 180/394 (45%), Gaps = 31/394 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M ++ Y N AD+I++NTC E A ++ I+ + Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDTKSADVILINTCGFIESAKQE------SIQTI 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N+ + +++ +GC+++ +EI P V++ G Y ++ ++ + Sbjct: 65 LNAAKDKKKGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117 Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 172 LDSILKEVEDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQVLKSARIL 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI A + Y +P+Q SD +LK M R + + +++D ++ V+ Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 I S IVG P E + +F +D+ + + F +S T + LE+V + + Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347 Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380 >gi|308184518|ref|YP_003928651.1| hypothetical protein HPSJM_03720 [Helicobacter pylori SJM180] gi|308060438|gb|ADO02334.1| hypothetical protein HPSJM_03720 [Helicobacter pylori SJM180] Length = 439 Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 99/395 (25%), Positives = 180/395 (45%), Gaps = 33/395 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 S GC N+ DS M ++ Y + AD+I++NTC E A E + + L ++ Sbjct: 13 SLGCSKNLVDSEMMLGKLYN--YTLTDDAKKADVILINTCGFIESAKQESIQTILNAAKD 70 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K EG +++ +GC+++ +EI P V++ G Y ++ L+ + Sbjct: 71 KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKK------ 117 Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 -------QNQFSEQVFLSEHYNTRIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 171 ELDSILKEVENLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARI 228 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + LI A V Y +P+Q SD +LK M R + + +++D ++ V Sbjct: 229 LYLYPSSTTLELIGAIESSPVFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV 288 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 + I S IVG P E + +F +D+ + + F +S T + LE+V + Sbjct: 289 KESF-IRSTIIVGHPEENEGEFEELSAFLDEFQFDRLNIFAFSAEENTHAYS-LEKVPKK 346 Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 347 TINARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380 >gi|312892375|ref|ZP_07751870.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603] gi|311295159|gb|EFQ72333.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603] Length = 210 Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 114/209 (54%), Gaps = 3/209 (1%) Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R++TSHP+D++D ++ D + Y+HLPVQSG+ RIL+ MNR + Y ID I Sbjct: 1 MRFSTSHPKDITDEVLYTIARYDNICNYIHLPVQSGNSRILEMMNRTYDRDWYIDRIDAI 60 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQ 381 R + P AIS+D I GF ETD++ + T+ ++D + Y A+ F YS R GT + Sbjct: 61 RRIIPGCAISTDVITGFCTETDEEHQDTVSMMDYVQYDFAYMFMYSERPGTLAAKRYADD 120 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 + E+VK RL + K ++ + A +G++ +VLIE + K+ + GRS V+ Sbjct: 121 IPEDVKKTRLQEIVAKQQQYSLVRLQAQLGKVQKVLIEGYSKKSDRDYCGRSDQNAMVIF 180 Query: 441 N-SKNHNIGDIIKVRITDVKISTLYGELV 468 + G + V +TL G+++ Sbjct: 181 PVDERFKPGQYVNVLAEKCTTATLIGKII 209 >gi|217033775|ref|ZP_03439201.1| hypothetical protein HP9810_7g56 [Helicobacter pylori 98-10] gi|216943824|gb|EEC23264.1| hypothetical protein HP9810_7g56 [Helicobacter pylori 98-10] Length = 439 Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 180/394 (45%), Gaps = 31/394 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M ++ Y N AD+I++NTC E A ++ I+ + Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTFTNDTKSADVILINTCGFIESAKQE------SIQTI 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 N+ + +++ +GC+++ +EI P V++ G Y ++ ++ + Sbjct: 65 LNAAKDKKRGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------- 117 Query: 151 DTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 ------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 172 LDSILKEVENLALKGYRDMTFIAQDSSSFLYD--KGQKDGLIQLIKAIDKQQALKSARIL 229 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 +P + LI A + Y +P+Q SD +LK M R + + +++D ++ V+ Sbjct: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 I S IVG P E + +F +D+ + + F +S T + LE+V + + Sbjct: 290 ESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKI 347 Query: 387 KAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 348 INARIKALNKIALKHQNNSFK-ALLNKPIKALVE 380 >gi|237755858|ref|ZP_04584455.1| hypothetical protein SULYE_0497 [Sulfurihydrogenibium yellowstonense SS-5] gi|237691994|gb|EEP61005.1| hypothetical protein SULYE_0497 [Sulfurihydrogenibium yellowstonense SS-5] Length = 253 Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 105/202 (51%), Gaps = 3/202 (1%) Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276 L+D G EI L G ++ + G D ++ T DLL +L +I+ L R+R ++ ++ D Sbjct: 6 LVDKGFKEIVLTGTQLSQY---GYDHKEGTLYDLLKNLVKIENLYRIRLSSMGINELDDK 62 Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336 LI + + P+ H+ +QS D++L+ M R +T EY + +++I S RP+ AI +D I Sbjct: 63 LIDFLTSEEKIAPHFHISIQSADDKVLRDMKRNYTVKEYIEKVEKIISKRPETAIGTDII 122 Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396 GFP E F T+ ++ I +A F YS R GT ++V K ER L++ Sbjct: 123 TGFPTEDKTAFLNTVKTINDIPFAYIHVFTYSERDGTTAVKFGDRVHPEEKKERTRILRE 182 Query: 397 KLREQQVSFNDACVGQIIEVLI 418 ++ F + + +E LI Sbjct: 183 ISYQKNYEFRKRFINKDLEFLI 204 >gi|301779277|ref|XP_002925056.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like, partial [Ailuropoda melanoleuca] Length = 429 Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 87/347 (25%), Positives = 161/347 (46%), Gaps = 33/347 (9%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GYE + DADL +LN+C ++ A + F Sbjct: 63 QKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDH---FR 119 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K +V+AGCV QA+ + + ++G Q R+ E++E Sbjct: 120 NSIKKAQEENKK------IVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V ++ +RL + +D RK + ++I GC CT+C + RG Sbjct: 171 KGHSVRLLGQK-KNNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI----- 257 S + ++V+ A++ GVCEI L ++ A+ G+ + + LL+ L E+ Sbjct: 230 ASYPIDELVERAKQSFQEGVCEIWLTSEDTGAY-GRDIG---TSLPALLWKLVEVIPEGA 285 Query: 258 ---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 G+ Y + H +M+ L + +LH+PVQS SD +L M R + + Sbjct: 286 MLRLGMTNPPYISEHLEEMAKILNHPR-----VYAFLHIPVQSASDTVLMEMKREYCVAD 340 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQ 361 +++++D ++ + + +S + G PG F T +V++ +Q Sbjct: 341 FKRVVDFLKENQTEGNPNSQ-VRGVPGSLLTMFWKTQSVVEEPEQSQ 386 >gi|257460357|ref|ZP_05625458.1| conserved hypothetical protein [Campylobacter gracilis RM3268] gi|257441688|gb|EEV16830.1| conserved hypothetical protein [Campylobacter gracilis RM3268] Length = 410 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 98/373 (26%), Positives = 176/373 (47%), Gaps = 34/373 (9%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + + K++GC+ N+YD+ ++ S E + AD++V+N+C + A V +++ Sbjct: 2 KIYFKTFGCRTNIYDTQLIKSNLKSG--EITHDEQGADVVVINSCTVTNGADADVRNYVN 59 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL-ERAR 144 ++ L +++ GC A + GEE+ + + V G ++ E L ++ Sbjct: 60 KMNRLGKK---------ILLTGCGAVSRGEELYKNGAVFGVF-GMSQKEKIDEFLGSESK 109 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGY--NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 F Y + D LS V+ + + AF+ IQEGCD C++C++P RG Sbjct: 110 F--------YDIGD----LSSVEKNLVSDYEDHTKAFIKIQEGCDFNCSYCIIPSVRGRS 157 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S S ++ EA L+ NG EI L G N+ ++ GK + LL L I+G+ R Sbjct: 158 RSSSEDAILKEAVSLVANGFSEIVLTGTNIGSY-GKAAG---TSLGALLQKLGGIRGIRR 213 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R + P + D + L +LH+ +Q S ++L M RR++A ++ + Sbjct: 214 IRLGSIEPSQI-DASFREILSEPWLERHLHIALQHTSQKMLSIMRRRNSALRDLELFCEL 272 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 A+ +DFIV PGE+++ + ++ K +F +SPR GT +++ ++ Sbjct: 273 --AERGFALGTDFIVAHPGESEELWLEAVENFKKFPLTHLHAFIFSPRQGTASASLKGRI 330 Query: 383 DENVKAERLLCLQ 395 D RL LQ Sbjct: 331 DGKTAKARLKMLQ 343 >gi|126643043|ref|YP_001086027.1| putative tRNA-i(6)A37 modification enzyme [Acinetobacter baumannii ATCC 17978] gi|126388927|gb|ABO13425.1| putative tRNA-i(6)A37 modification enzyme [Acinetobacter baumannii ATCC 17978] Length = 137 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 61/148 (41%), Positives = 91/148 (61%), Gaps = 15/148 (10%) Query: 36 MNVYDSLRMEDMFF-SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MN YDS RM D+ S GY N+ ++AD++++NTC IREKA EKV+S LGR R LK Sbjct: 1 MNEYDSHRMADLLGDSHGYVLTNNPNEADILLMNTCSIREKAQEKVFSELGRWRKLK--- 57 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154 ++ DL++ V GCVA EG+ I +R+P V+++ GPQT +RLP++L++ Sbjct: 58 -EQNPDLVIGVGGCVASQEGDNIQKRAPYVDMIFGPQTLHRLPQMLDQHHA--------- 107 Query: 155 SVED-KFERLSIVDGGYNRKRGVTAFLT 181 VE K E++ +VD + T++L Sbjct: 108 QVEKPKKEKIKLVDISFPDIENSTSYLN 135 >gi|330902503|gb|EGH33524.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 262 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 132/241 (54%), Gaps = 26/241 (10%) Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTF 247 P RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A+ R DG+ K Sbjct: 1 PSMRGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRM 60 Query: 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 ++L +L + VRL Y +P + A G + +PYL +P Q S +ILK M Sbjct: 61 TELCQALGSMGVWVRLHYVYPYPHVDELIPLMAAGKI---LPYLDIPFQHASPKILKLMK 117 Query: 308 RRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 R A+E + + RI++ R PD+ I S FIVGFPGET++DF+ +D + + + Sbjct: 118 R--PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGC 174 Query: 365 FKYSPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 F+YSP G P +N+L+ V ++VK +R + Q+ + ++ +G+ IEVLI+ Sbjct: 175 FQYSPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMK---IGKEIEVLID 230 Query: 420 K 420 + Sbjct: 231 E 231 >gi|317009256|gb|ADU79836.1| hypothetical protein HPIN_02965 [Helicobacter pylori India7] Length = 439 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 98/393 (24%), Positives = 188/393 (47%), Gaps = 29/393 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 S GC N+ DS M ++ Y N +AD+I++NTC E A E + + L ++ Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDAKNADVILINTCGFIESAKQESIQTILNAAKD 70 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR--FGK 147 K EG +++ +GC+++ +EI P V++ G Y ++ ++ + + F + Sbjct: 71 KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSE 123 Query: 148 RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSL 207 +V +++ I+ G V A++ I EGC++ C+FC +P +G SR L Sbjct: 124 QVFLSEHY------NARIITGSI-----VHAYVKISEGCNQKCSFCAIPSFKGKLQSREL 172 Query: 208 SQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 + ++ E + L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 173 NSILKEVQDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARILY 230 Query: 268 SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 +P + LI A + Y +P+Q SD +LK M R + + ++++ ++ V+ Sbjct: 231 LYPSSTTLELIGAIESSLIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQVKE 290 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 I S IVG P E++ +F +D+ + + F +S T + LE+V + + Sbjct: 291 SF-IRSTIIVGHPEESEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKKII 348 Query: 388 AERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 349 NARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380 >gi|942592|gb|AAC44030.1| unknown [Mycoplasma iowae] Length = 249 Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 131/246 (53%), Gaps = 6/246 (2%) Query: 224 EITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIK-AHG 282 EI L G N + LD TF DLL +++++ G R+R ++ P ++D +I Sbjct: 8 EIVLTGVNTAGY----LDENNNTFFDLLNNINKLDGDFRVRISSLEPFQINDEIIDLVTS 63 Query: 283 DLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE 342 + + H+ +QSGSD +LK MNR++T E+ +++ +I + P ++D+IVGFP E Sbjct: 64 NKKRFCQHWHICLQSGSDDVLKKMNRKYTTDEFYKLMQKILNKSPLTNFTTDYIVGFPTE 123 Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQ 402 TD+D + ++D ++KI F YS R T S+ + ++++ K +R+ + K + Sbjct: 124 TDEDQKKSIDFLNKIKLYDMHIFPYSKRNNTRSSH-YKDINDSTKKDRVKEITKLNYLNK 182 Query: 403 VSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKIST 462 +G+ EVL EK +++ G S V++ S ++ ++KVRI + + Sbjct: 183 KENLKKYIGKTCEVLFEKKKEDEKMWSGYSNEYCRVMVESGDNLENKMLKVRIKKIFFDS 242 Query: 463 LYGELV 468 L GE++ Sbjct: 243 LVGEII 248 >gi|208434645|ref|YP_002266311.1| hypothetical protein HPG27_690 [Helicobacter pylori G27] gi|238066301|sp|B5Z796|RIMO_HELPG RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gi|208432574|gb|ACI27445.1| hypothetical protein HPG27_690 [Helicobacter pylori G27] Length = 439 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 97/395 (24%), Positives = 181/395 (45%), Gaps = 33/395 (8%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 S GC N+ DS M ++ Y N + AD+I++NTC E A E + + L ++ Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDVKSADVILINTCGFIESAKQESIQTILNAAKD 70 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K EG +++ +GC+++ +EI P V++ G Y ++ ++ + Sbjct: 71 KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------ 117 Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 171 ELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARI 228 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + LI A + Y +P+Q SD +LK M R + + ++++ ++ V Sbjct: 229 LYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQV 288 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 + I S IVG P E + +F +D+ + + F +S T + LE+V + Sbjct: 289 KESF-IRSTIIVGHPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYS-LEKVPKK 346 Query: 386 VKAERLLCLQK-KLREQQVSFNDACVGQIIEVLIE 419 R+ L K L+ Q SF A + + I+ L+E Sbjct: 347 TINARIKALNKIALKHQNHSFK-ALLNKPIKALVE 380 >gi|224826493|ref|ZP_03699594.1| MiaB-like tRNA modifying enzyme YliG [Lutiella nitroferrum 2002] gi|224601094|gb|EEG07276.1| MiaB-like tRNA modifying enzyme YliG [Lutiella nitroferrum 2002] Length = 370 Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 93/314 (29%), Positives = 153/314 (48%), Gaps = 37/314 (11%) Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237 A+L I EGC+ CT C++P RG SR + V+ EA L +GV E+ ++ Q+ +A+ Sbjct: 71 AYLKISEGCNHRCTSCIIPSMRGDLDSRPIHDVLSEAENLAKSGVKELLVISQDTSAY-- 128 Query: 238 KGLDGEKCT-----------FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286 G+D + T ++L L VRL Y +P D +I D + Sbjct: 129 -GVDVKYKTGFHNGRPVRTRMTELCEELGRHGIWVRLHYVYPYPH--VDEVIPLMRDGKI 185 Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 L PYL +P Q S RILK M R + I + R + PD+ I S FIVGFPGET+++ Sbjct: 186 L-PYLDIPFQHASQRILKLMKRPANSENVLARIKKWREICPDLVIRSTFIVGFPGETEEE 244 Query: 347 FRATMD-----LVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK---AERLLCLQKKL 398 F + ++D++G F YSP G +++ + V E VK ER + +Q ++ Sbjct: 245 FEELLALLREAMLDRVG-----CFTYSPVAGAAANDLPDPVPEEVKEVRKERFMEVQAEI 299 Query: 399 REQQVSFNDACVGQIIEVLIEKHGKEKG--KLVGRSPWLQSVVL--NSKNHNIGDIIKVR 454 +++ VGQ + VL+++ ++ + +P + +V ++ +GD ++V Sbjct: 300 SAARLARR---VGQRMTVLVDEIDEQGAVCRSYADAPEIDGMVFVADADGLQVGDFVEVE 356 Query: 455 ITDVKISTLYGELV 468 I L+ E V Sbjct: 357 IAASDEHDLWAERV 370 >gi|299471728|emb|CBN76949.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ectocarpus siliculosus] Length = 455 Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 101/167 (60%), Gaps = 2/167 (1%) Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 ++LK+M R +T Y +IIDRIR + PD AI+ D IVGFPGET++ F+ T+DL++++ + Sbjct: 282 QVLKNMRRGYTITRYMRIIDRIRELSPDAAITGDVIVGFPGETEEQFQHTLDLMERVKFD 341 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-E 419 +F YSPR T + QV E+VKA+RL + + +D +G++ EVL+ E Sbjct: 342 NLNTFSYSPRPNTEAALWENQVPEDVKADRLQRVMRLGCTHAQERSDRYMGRVEEVLVEE 401 Query: 420 KHGKEKGKLVGRSPWLQSVVLNSKNHNI-GDIIKVRITDVKISTLYG 465 ++ K +++GR+ + V LN + G +IK IT+ + +L G Sbjct: 402 RNPKNAAQVMGRTRTNRPVFLNGDIGQLKGKLIKAEITECRPWSLTG 448 >gi|302875948|ref|YP_003844581.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|307686658|ref|ZP_07629104.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|302578805|gb|ADL52817.1| Radical SAM domain protein [Clostridium cellulovorans 743B] Length = 382 Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 100/383 (26%), Positives = 156/383 (40%), Gaps = 63/383 (16%) Query: 43 RMEDMFFSQGYERVNS-------------------MDDADLIVLNTCHIREKAAEKVYSF 83 +M + F GYE VN +ADL VL TC + + + Sbjct: 20 KMRNFFRENGYELVNDGTGLDPTNKYAFPLEDLVISPEADLFVLTTCGFSKSIEDGDFDA 79 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L I K K V+V GC+ + E RL E + Sbjct: 80 LKMIMKYKKPSAK------VIVGGCIVKIAKE-------------------RLDEEFDGE 114 Query: 144 RFGKRVVDT-DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 RF + + D VE K I DG F+ IQ+GC+ C++C + G Sbjct: 115 RFDAKSYNLLDEFVEHKVSFDEIKDGNVMNFTD-NYFIKIQDGCNHRCSYCAIWKAAGKS 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S+ +++V++E + G I LG+ + A+ GLD F++LL + +I+G Sbjct: 174 TSKPIAEVIEEFNYGLRQGFKHIYFLGECMGAY---GLDF-GSNFAELLEEIDKIEGDYD 229 Query: 263 LRYTTSHP-------RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 L P + IK ++ LH+P+QSG DRILK M R Sbjct: 230 LLIEDISPIYFLRNYEAIKKLCIKG------VIRSLHVPIQSGCDRILKLMMRTGDMALV 283 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 ++ + +++ P+ +SS IVGFP ET ++F+ T++ + +S R G P Sbjct: 284 KEKMQELKNAAPNTTLSSAVIVGFPTETVEEFQETLEYCKDSCFDTVACHVFSARDGAPA 343 Query: 376 SNMLEQVDENVKAERLLCLQKKL 398 + M QVDE K R ++K Sbjct: 344 AEMDGQVDEEEKYRRYTEFKEKF 366 >gi|313142775|ref|ZP_07804968.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131806|gb|EFR49423.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 181 Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 108/181 (59%), Gaps = 5/181 (2%) Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 +P+QSGS +IL+ M R ++ + + ++R++ PD++I +D IVGFP E+++DF T+D Sbjct: 1 MPLQSGSTKILQKMKRGYSKEWFLDRVAKMRALIPDLSIGTDIIVGFPTESEEDFLDTLD 60 Query: 353 LVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-----VDENVKAERLLCLQKKLREQQVSFND 407 +++K+ + +SF YS R T + L+ +DE + RL+ L+ + +E N Sbjct: 61 VLEKVRFDTLYSFIYSTRPHTQAATWLDNGEIQLLDEEIAKNRLMILKDRHKEILAQENA 120 Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 +G+I VL E + +E L GRS + + + + + IG+I V+I+++K + L GEL Sbjct: 121 KQLGKIHPVLFESYDEENFLLEGRSDTNKLIRVKAGRNLIGEICNVKISEIKGAQLIGEL 180 Query: 468 V 468 + Sbjct: 181 L 181 >gi|308162206|gb|EFO64615.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia P15] Length = 525 Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 127/516 (24%), Positives = 221/516 (42%), Gaps = 99/516 (19%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQG---------YERVNSMDDADLIVLNTCHIREKA 76 R + + GC N +S + + G Y S D D++ +N+C ++ + Sbjct: 25 RVMMVTMGCGHNAAESDIIASALQTAGAVIIHSNGKYITPESAKDVDVLYINSCTVKNPS 84 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDL--LVVVAGCVAQAEG--EEILRRSP-----IVNVV 127 +K + +++G ++ +VV+ GCV Q+ G + LR++ I++ V Sbjct: 85 EDKAFV-----------HVQKGLEVGTVVVLGGCVPQSYGAMSDELRKASASKQLIISGV 133 Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKF--------------------ERLSIVD 167 + Q LP LL A +++T + ++ E VD Sbjct: 134 LTQQWLTALPGLLREA-IDFHILNTSHVLQPALRMTQPSSKAGVSAAISYVTKEATKDVD 192 Query: 168 GGY------NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK-LIDN 220 Y +R + ++ GC CT+C ++RG S L ++ R L D Sbjct: 193 VEYLKCTPVHRANPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLTRIRNSLADP 252 Query: 221 GVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SD 275 + E+ L G++ AW R G TF+ LL E++ L+ T + D Sbjct: 253 VIRELWLTGEDTLAWGRESG-----TTFAGLL---QEVQKLLETENPTHKMLKIGMTDPD 304 Query: 276 CLIKAHGDLDVLM------PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 +I L + +LHLPVQSGSDRIL M R + + + +++S PD+ Sbjct: 305 SIINQEDSLASFICCKYVYKFLHLPVQSGSDRILTLMRRHYDIETFLKSCSKLQSAVPDL 364 Query: 330 AISSDFIVGFPGETDDDFRATMDLV-----DKIGYAQAFSFKYSPRLGTPGSNMLEQVDE 384 + +D I GFPGETD+D +++L D + +Y R TP ++M EQV Sbjct: 365 CLDTDIICGFPGETDEDHAQSLNLFRNLKEDAPRFQVVNITQYYARKNTPAASM-EQVPA 423 Query: 385 NVKAERLLCLQKKLREQQVSF-NDACVGQIIEVLI------EKHGKEKGKLVGRSPWLQS 437 + K ER + + ++ SF D GQ+ ++++ E HG++ G G++ + Sbjct: 424 SKKRERTKEMSEVVKN---SFRRDQYHGQVHDIMVLEKLQTESHGRQYG---GKTYNNLT 477 Query: 438 VVLNSKNHNI----GDIIKVRITDVKISTLYGELVV 469 VV+ + + + G I+VRIT L G ++ Sbjct: 478 VVIETVDQEVPIKLGSYIRVRITGSTRVALIGSVMA 513 >gi|74146734|dbj|BAE41351.1| unnamed protein product [Mus musculus] Length = 351 Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 82/310 (26%), Positives = 143/310 (46%), Gaps = 34/310 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +++++GC N D M + GY+ + DADL +LN+C ++ A + F Sbjct: 63 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED---HFR 119 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 I+ + K VV+AGCV QA+ + + ++G Q R+ E++E Sbjct: 120 NSIKKAQEENKK------VVLAGCVPQAQPRQDYLKG---LSIIGVQQIDRVVEVVEETI 170 Query: 145 FGKRVVDTDYSVEDKFERL--SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V +D +RL + +D RK + ++I GC CT+C + RG Sbjct: 171 KGHSVRLLGQK-KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNL 229 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEI---- 257 S + ++V+ A++ GVCEI L ++ A+ R G D LL+ L E+ Sbjct: 230 ASYPIDELVERAKQSFQEGVCEIWLTSEDTGAYGRDIGTD-----LPTLLWKLVEVIPEG 284 Query: 258 ----KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 G+ Y H +M+ L + +LH+PVQS SD +L M R + Sbjct: 285 AMLRLGMTNPPYILEHLEEMAKILNHPR-----VYAFLHIPVQSASDSVLMDMKREYCVA 339 Query: 314 EYRQIIDRIR 323 ++++++D ++ Sbjct: 340 DFKRVVDFLK 349 >gi|229845637|ref|ZP_04465762.1| predicted 2-methylthioadenine synthetase [Haemophilus influenzae 6P18H1] gi|229811437|gb|EEP47141.1| predicted 2-methylthioadenine synthetase [Haemophilus influenzae 6P18H1] Length = 243 Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/215 (33%), Positives = 119/215 (55%), Gaps = 17/215 (7%) Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 VRL Y +P D LI D L+PYL +P+Q S +ILK+M R + + I Sbjct: 34 VRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHASPKILKAMKRPGSIDRTLERIK 90 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + R + PD+ + S FIVGFPGET++DF+ +D + + + FK+SP G ++M + Sbjct: 91 QWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAHATDMAD 150 Query: 381 QVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PW 434 QV E+VK ER + +Q++S N +G+ ++VL+++ ++ ++GRS P Sbjct: 151 QVPEDVKEERFHRFMQ--LQQEISANRLKQKIGKTLDVLVDE--IDEDGIIGRSKADAPE 206 Query: 435 LQSVV----LNSKNHNIGDIIKVRITDVKISTLYG 465 + +V L+ N +GD+IKV IT+ L+G Sbjct: 207 VDGLVYVDNLSGINVKVGDVIKVTITNSDEYDLWG 241 >gi|313217015|emb|CBY38208.1| unnamed protein product [Oikopleura dioica] Length = 1477 Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 36/236 (15%) Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231 R+ + ++I GC CT+C + RG S + ++V + + G+ E+ L ++ Sbjct: 49 RRNALIEIISINTGCLNSCTYCKTKHARGDLASYPIDEIVARFEQAFEQGIVEVWLTSED 108 Query: 232 VNAW-RGKGLD------------GEKCTF----SDLLYSLSEIKGLVRLRYTTSHPRDMS 274 A+ R G + E C ++ Y L ++G+ ++ +HPR Sbjct: 109 TGAYGRDIGTNIVELLNAVVKTIPEGCMMRIGMTNPPYILEHLEGIAKI---LNHPR--- 162 Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334 + +LH+PVQSGSD +L SM R + ++ +++D +R+ PD I++D Sbjct: 163 ------------VYSFLHVPVQSGSDAVLNSMRREYNREDFCKVVDTLRANVPDCNIATD 210 Query: 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 I GFP ET++DF T+ L +K + F ++ PR GTP + EQ+ V ER Sbjct: 211 IIAGFPTETEEDFDETISLCEKYKFPSLFMNQFFPRPGTPAAKW-EQIPRQVIKER 265 >gi|213419959|ref|ZP_03353025.1| hypothetical protein Salmonentericaenterica_20195 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 231 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 124/234 (52%), Gaps = 19/234 (8%) Query: 210 VVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYSLSEIKGLV 261 V+ EA++L+D GV EI ++ Q+ +A+ R +GE K + L LS++ Sbjct: 2 VLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPMKTSMVSLCEQLSKLGVWT 61 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RL Y +P + A G + +PYL +P+Q S RILK M R + I + Sbjct: 62 RLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQ 118 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G + + +Q Sbjct: 119 WREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANELPDQ 178 Query: 382 VDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRS 432 V E VK E R + LQ+++ +++ VG+ I V++++ +E +GRS Sbjct: 179 VPEEVKEERWNRFMQLQQQISAERLQEK---VGREILVIVDEVDEEGA--IGRS 227 >gi|205356717|ref|ZP_03223478.1| hypothetical protein Cj8421_1025 [Campylobacter jejuni subsp. jejuni CG8421] gi|205345455|gb|EDZ32097.1| hypothetical protein Cj8421_1025 [Campylobacter jejuni subsp. jejuni CG8421] Length = 354 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 84/330 (25%), Positives = 150/330 (45%), Gaps = 44/330 (13%) Query: 103 VVVAGCVAQAEGEEILRRSPI-----------VNVVVGPQT-YYRLPELLERARFGKRVV 150 V++ GC A ++G+E+L + + +N +G +T +Y L L + Sbjct: 8 VILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAKTSFYELGNL--------NFI 59 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D D E + AF+ IQEGCD C++C++P RG S + Sbjct: 60 DKDIVCE--------------YENHTKAFVKIQEGCDFACSYCIIPSVRGKSRSVDEKAL 105 Query: 211 VDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 + + L NG EI L G N+ ++ GL T LL + +I G+ R+R + P Sbjct: 106 LKQVEILGANGYSEIVLTGTNIGSY---GLKN-GTTLGKLLQKMGQILGIKRIRLGSLEP 161 Query: 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 + + ++ D L +LH+ +Q S+++L+ M RR ++ + I S A Sbjct: 162 AQLDESFLEIL-DEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNAIAS--KGYA 218 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 + +DFIV PGE+++ ++ + + +F +SPR T + M + ++ + ER Sbjct: 219 LGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVINGTLAKER 278 Query: 391 LLCLQKKLREQQVSFNDACVGQI-IEVLIE 419 L L+ + + F Q+ +EVL+E Sbjct: 279 LNTLKSIVEKNNYEFRKK--NQVSLEVLVE 306 >gi|225629588|ref|ZP_03787609.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591558|gb|EEH12577.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 172 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/164 (39%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 G L G+ S + L +I L RLR ++ ++ D L+ + LMP+LHL +Q Sbjct: 12 GTDLLGKPSLGSMIRRVLKDIPELKRLRLSSIDVAEVDDELMDLIANESRLMPHLHLSLQ 71 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 SG++ ILK M RRH + + +++S+RP+IA +D I GFP ETD+ F+ T+DL+ K Sbjct: 72 SGNNLILKRMKRRHNREQVIEFCHKMKSLRPNIAFGADIIAGFPTETDEMFQDTVDLLKK 131 Query: 357 IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLRE 400 +F YS R TP + M QV ENV+ ER+ K LRE Sbjct: 132 TNILYLHAFPYSERKSTPAARM-PQVPENVRKERV----KNLRE 170 >gi|86171407|ref|XP_966205.1| radical SAM protein, putative [Plasmodium falciparum 3D7] gi|46361171|emb|CAG25035.1| radical SAM protein, putative [Plasmodium falciparum 3D7] Length = 860 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 140/292 (47%), Gaps = 27/292 (9%) Query: 97 EGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYS 155 EG ++ ++V GCV QAE + EI +V G ++ +++E G V S Sbjct: 493 EGKNIKIIVCGCVPQAEKDMEIFENVSLV----GVNNIDKIVDVVENVINGYNVQYLKTS 548 Query: 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 ++++ ++ RK + I GC CT+C + RG S ++ + D Sbjct: 549 -----KKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDLSSYNIRDITDRIT 603 Query: 216 KLIDN-GVCEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEIKGLVRL-----RYT 266 + + + EI L ++ A+ G+D ++L S+ ++RL Y Sbjct: 604 YVCNEENIKEIWLTSEDTGAY---GIDINTDIVNLLKNILKSVEHTNVMIRLGMTNPPYI 660 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 H +D+ C + H ++ ++H+PVQSGS+ +LK+MNR +T ++ +++ +R Sbjct: 661 LKHIKDI--CTLLKHKNM---YEFIHIPVQSGSNNVLKNMNREYTIEDFIFLVENLRKYV 715 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 P+I IS+D I GFP E++ D + T+ L+ + ++ PR GT NM Sbjct: 716 PNITISTDIICGFPYESEQDHQNTVHLIKNFQFPILNISQFYPRRGTVAYNM 767 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Query: 22 IVPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 I+P+ + + KS+GC N DS M + + G++ V +++ D+ ++N+C ++ + E Sbjct: 238 ILPENYKIYFKSFGCAHNSSDSEFMMGLLANYGFKFVKKIEECDICIVNSCTVKNPSEES 297 Query: 80 VYSFLGRIRNL 90 + + + ++ L Sbjct: 298 MKTIINYVKKL 308 >gi|254448855|ref|ZP_05062311.1| 2-methylthioadenine synthetase [gamma proteobacterium HTCC5015] gi|198261545|gb|EDY85834.1| 2-methylthioadenine synthetase [gamma proteobacterium HTCC5015] Length = 277 Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/280 (27%), Positives = 127/280 (45%), Gaps = 34/280 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N DS R+ S+GY+ A+L+++NTC + A ++ +G Sbjct: 18 SLGCPKNTVDSERILTQLRSEGYQISPDYQGAELVIVNTCGFIDAAKKESLDTIGE---- 73 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 ++E G V+V GC+ E +I P V V GP Y + + + V Sbjct: 74 ---ALQENGK--VIVTGCMGATE-SDITEVHPGVLSVSGPHQYEAVIKSVHEH------V 121 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 D F L + G A+L I EGCD C+FC++P RG +SR + +V Sbjct: 122 TPPPQSHDPFIDL-VPPQGIKLTPKHYAYLKISEGCDHTCSFCIIPSMRGKLVSRPIGEV 180 Query: 211 VDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEKCTFSDLLYSLSEIKG 259 +DEA++L ++GV E+ ++ Q+ +A W G+ + K +L +L E+ Sbjct: 181 LDEAKRLAESGVKELLIISQDTSAYGSDVGYKLDFWNGRPI---KTRLKELCEALGELGV 237 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGS 299 VRL Y +P + A G ++PYL +P + + Sbjct: 238 WVRLHYVYPYPSVDDIIPLMAEGK---ILPYLDIPFHTPT 274 >gi|82915234|ref|XP_729019.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23485813|gb|EAA20584.1| Drosophila melanogaster GH28477p-related [Plasmodium yoelii yoelii] Length = 817 Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 78/307 (25%), Positives = 147/307 (47%), Gaps = 28/307 (9%) Query: 94 RIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 R G D+ ++V GCV QAE + +I +V G ++ + +E G V Sbjct: 448 RTNSGKDIKIIVCGCVPQAENDMKIFENVSLV----GVNNIDKIVDAVENVINGYNV--- 500 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 Y + K +++ ++ RK + I GC CT+C + RG S ++ +V+ Sbjct: 501 KYLKQSK--KMTSLNLPKIRKNKFIEIININNGCLGNCTYCKTKFARGNLSSYNIKDIVN 558 Query: 213 EARKL-IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK--------GLVRL 263 + + + + EI L ++ A+ G+D + L L ++ G+ Sbjct: 559 RIKHVYTKDNIKEIWLTSEDSGAY---GIDLNTNIVNLLKEILEYVQDTDVMIRIGMTNP 615 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y H +D+ C + H ++ ++H+PVQSGS+ +LK MNR + ++ ++D +R Sbjct: 616 PYILKHVKDI--CKLLKHKNM---YEFIHIPVQSGSNNVLKDMNREYKIEDFIYLVDNLR 670 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++ I++D I GFP E+++D T++L+ K + ++ PR GT NM +++D Sbjct: 671 KYVPNMTIATDIICGFPYESENDHLETVNLIKKYKFPILNISQFYPRRGTVAYNM-KKID 729 Query: 384 ENVKAER 390 + +R Sbjct: 730 TKIVKKR 736 Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust. Identities = 16/66 (24%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Query: 24 PQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 P+ + + KS+GC N DS M + + G++ V +++D D+ ++N+C ++ + E + Sbjct: 248 PENYNIYFKSFGCAHNSSDSEFMMGLLSNYGFKFVKNIEDCDICIVNSCTVKNPSEESMK 307 Query: 82 SFLGRI 87 + + + Sbjct: 308 TIINYV 313 >gi|221057894|ref|XP_002261455.1| hypothetical protein, conserved [Plasmodium knowlesi strain H] gi|194247460|emb|CAQ40860.1| hypothetical protein, conserved [Plasmodium knowlesi strain H] Length = 750 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 142/290 (48%), Gaps = 27/290 (9%) Query: 99 GDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE 157 GD+ ++V GCV QAE + EI +V G ++ +++E G V +S Sbjct: 386 GDIKIIVCGCVPQAEKDMEIFENVSLV----GVTNIDKIVDVVENVINGYNVRYLKHS-- 439 Query: 158 DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKL 217 ++++ ++ RK + I GC CT+C + RG S ++ +++ + + Sbjct: 440 ---KKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDLASYNIPDIINRIKHV 496 Query: 218 IDN-GVCEITLLGQNVNAWRGKGLDGEKCT---FSDLLYSLSEIKGLVRL-----RYTTS 268 + + EI L ++ A+ G+D ++L ++S ++RL Y Sbjct: 497 CNEENIKEIWLTSEDTGAY---GIDLNTNIVKLLKEILDTISNSDVMIRLGMTNPPYILK 553 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 H +D+ C + H ++ ++H+PVQSGS+R+LK+MNR + ++ +++ +R P+ Sbjct: 554 HIKDI--CNLLKHKNM---YEFIHIPVQSGSNRVLKNMNREYEIEDFIYLVENLRKDVPN 608 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I I++D I GFP E + D T+DLV K + ++ PR GT M Sbjct: 609 ITIATDIICGFPYEMEKDHLETVDLVKKYQFPILNISQFYPRRGTVAYGM 658 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 19/80 (23%), Positives = 47/80 (58%), Gaps = 4/80 (5%) Query: 18 VDQC--IVPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 +++C I+P+++ + KS+GC N DS M + + G++ V S+++ D+ ++N+C ++ Sbjct: 201 LNECAVILPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVK 260 Query: 74 EKAAEKVYSFLGRIRNLKNS 93 + E + + + + L + Sbjct: 261 NPSEESMKTIINYVHKLNKT 280 >gi|68068881|ref|XP_676351.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56496008|emb|CAH98348.1| conserved hypothetical protein [Plasmodium berghei] Length = 784 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/307 (25%), Positives = 146/307 (47%), Gaps = 28/307 (9%) Query: 94 RIKEGGDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 R G D+ ++V GCV QAE + +I +V G ++ + +E G V Sbjct: 415 RTSSGKDIKIIVCGCVPQAENDMKIFENVSLV----GVNNIDKIVDAVENVINGYNV--- 467 Query: 153 DYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 Y + K +++ ++ RK + I GC CT+C + RG S ++ +V Sbjct: 468 KYLKQSK--KMTSLNLPKIRKNKFIEIININNGCLGNCTYCKTKFARGNLSSYNIKDIVS 525 Query: 213 EARKL-IDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK--------GLVRL 263 + + + + EI L ++ A+ G+D + L L ++ G+ Sbjct: 526 RIKYVCTKDNIKEIWLTSEDSGAY---GIDLNTNIVNLLKEILDYVQDTDVMIRIGMTNP 582 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 Y H +D+ C + H ++ ++H+PVQSGS+ +LK MNR + ++ ++D +R Sbjct: 583 PYILKHVKDI--CKLLKHKNM---YEFIHIPVQSGSNNVLKDMNREYKIEDFIYLVDNLR 637 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVD 383 P++ I++D I GFP E+++D T++L+ K + ++ PR GT NM +++D Sbjct: 638 KYVPNMTIATDIICGFPYESENDHLETVNLIKKYKFPILNISQFYPRRGTVAYNM-KKID 696 Query: 384 ENVKAER 390 + +R Sbjct: 697 TKIVKKR 703 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query: 22 IVPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 I+P+ + + KS+GC N DS M + + G++ V ++DD D+ ++N+C ++ + E Sbjct: 215 IIPENYNIYFKSFGCAHNSSDSEFMMGLLSNYGFQFVKNIDDCDICIVNSCTVKNPSEES 274 Query: 80 VYSFLGRIRNLKNSRIKE 97 + + + + NL SR E Sbjct: 275 MKTIIKYVNNLNKSRNNE 292 >gi|159111403|ref|XP_001705933.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803] gi|157434024|gb|EDO78259.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803] Length = 525 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 121/519 (23%), Positives = 217/519 (41%), Gaps = 105/519 (20%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQG---------YERVNSMDDADLIVLNTCHIREKA 76 R + + GC N +S + + G Y S D D++ +N+C ++ + Sbjct: 25 RVMMVTMGCGHNAAESDIIASALQTAGAVITHSNGKYITPESARDVDVLYINSCTVKNPS 84 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDL--LVVVAGCVAQAEG--EEILRRSP-----IVNVV 127 +K + +++G ++ +VV+ GCV Q+ G + LR++ I++ V Sbjct: 85 EDKAFV-----------HVQKGLEVGTVVVLGGCVPQSYGTVNDELRKASAAKQLIISGV 133 Query: 128 VGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG------------------ 169 + Q LP LL A +++ + ++ D Sbjct: 134 LTQQWLAALPRLLREA-IDLHILNNSHLLQPALRMTQPSDKAGVPAAISYVTKEATKDVE 192 Query: 170 --------YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK-LIDN 220 +R + ++ GC CT+C ++RG S L ++ R L D Sbjct: 193 VEYLKCTPVHRANPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIRSSLADP 252 Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM------- 273 + E+ L G++ AW G+ D TF+ LL + ++ + T +P Sbjct: 253 IIRELWLTGEDTLAW-GRESDA---TFAVLLQEVQKL-------FETENPTHKMLKIGMT 301 Query: 274 -SDCLIKAHGDLDVLM------PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 D +I L M +LHLPVQSGSDRIL M R + + + +++S Sbjct: 302 DPDSVINQEDSLISFMRCKYVYKFLHLPVQSGSDRILTLMRRHYDIETFLRSCSKLQSAV 361 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLV-----DKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 PD+ + +D I GFPGETD+D +++L D + +Y R TP ++M EQ Sbjct: 362 PDLCLDTDIICGFPGETDEDHAQSLNLFRNLKEDAPRFQVVNITQYYARKNTPAASM-EQ 420 Query: 382 VDENVKAERLLCLQKKLREQQVSF-NDACVGQIIEVLI------EKHGKEKGKLVGRSPW 434 V + K ER + + ++ SF D GQ+ ++++ E HG++ G G++ Sbjct: 421 VPASKKRERTREMSEVVKN---SFRRDQYHGQVHDIMVLERLQTENHGRQYG---GKTYN 474 Query: 435 LQSVVLNSKNHNI----GDIIKVRITDVKISTLYGELVV 469 +V + + + + G ++VRIT L G ++ Sbjct: 475 NLTVAIEAVDQEVPIKLGSYVRVRITGSTRVALIGSVMT 513 >gi|260587678|ref|ZP_05853591.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Blautia hansenii DSM 20583] gi|260541943|gb|EEX22512.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Blautia hansenii DSM 20583] Length = 165 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 92/155 (59%), Gaps = 1/155 (0%) Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 MNRR+ +Y ++++IR+ PDI++++D IVGFPGET++DF T+D+V K+ Y AF+F Sbjct: 1 MNRRYDKEKYLNLVEKIRTAIPDISLTTDIIVGFPGETEEDFLETVDVVKKVRYDSAFTF 60 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGKE 424 YS R GTP + M QV E V +R L + ++ + G+++EVL+ E++ ++ Sbjct: 61 IYSKRTGTPAAVMENQVSEGVVKDRFNRLLETVQSIGREMSARDTGKVMEVLVEEQNSQD 120 Query: 425 KGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459 K + GR V IG + +VR+ + + Sbjct: 121 KHLMTGRLSNNLLVHFEGDTSLIGQLCQVRLDECR 155 >gi|268609251|ref|ZP_06142978.1| RNA modification enzyme, MiaB family protein [Ruminococcus flavefaciens FD-1] Length = 262 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/274 (26%), Positives = 130/274 (47%), Gaps = 20/274 (7%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 R F ++GC++N Y++ M+ +F +G+E + S + AD +V+N+C + Sbjct: 3 RVFFITFGCKVNHYETECMKSLFRERGFEILRSQEGADAVVINSCTVTSSGDS------- 55 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 R+ D ++ + GC QA +E + + +++VG + +P L+E Sbjct: 56 RVLAALRKARAALPDAVIALTGCYPQASPDEAAKLTD-ADIIVGTKDRSGIPALVEECLA 114 Query: 146 GK-RVVD-TDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 + R+V + Y + FE + N + AF+ IQ+GCD+FC++C++P+ RG Sbjct: 115 DRHRIVSISPYIKGEPFEPIVCSRFDDNTR----AFVKIQDGCDQFCSYCMIPFARGRCR 170 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S+ L V E + NG EI L G N+ + R G D +D + S G+ R Sbjct: 171 SKPLEIVRQEIADIAANGKKEIVLTGINLAFYGREFGYD-----MADAVKVCSGTGGIER 225 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 +R + P MS+ ++ + P HL +Q Sbjct: 226 IRLGSLEPEMMSEDMLMRLAAIPQFCPQFHLSLQ 259 >gi|149194100|ref|ZP_01871198.1| hypothetical protein CMTB2_03408 [Caminibacter mediatlanticus TB-2] gi|149136053|gb|EDM24531.1| hypothetical protein CMTB2_03408 [Caminibacter mediatlanticus TB-2] Length = 433 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 84/351 (23%), Positives = 172/351 (49%), Gaps = 25/351 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++ S GC N+ DS M ++ YE + ++ADLI++NTC A E+ + Sbjct: 2 KKLYIASLGCVKNLIDSEVMLGKLKNE-YEITLNPNEADLIIVNTCGFINLAKEESIDTI 60 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 + N K K +VV GC+++ + + + P V++ G + R+ E+++ Sbjct: 61 LELANEKKENAK------LVVTGCLSERYKDILPKEIPEVDIWSGVGDFDRIDEIIKSN- 113 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 K+V + +R+ I Y+ A++ + EGC++ C+FC +P +G S Sbjct: 114 -SKKVFSNKVFLIHNEDRV-ITGSSYH------AYIKLSEGCNQKCSFCAIPSFKGKLQS 165 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCTFSDLLYSLSEIKGLVR 262 R + ++++E ++L D G + +L Q+ +++ R KG+ DG + L + + Sbjct: 166 REIEEIINEIKRLKDKGYKDFSLASQDSSSYLRDKGIRDG-----LERLIDEIDKIDDIN 220 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R +P + LI+ ++ Y +P+Q + ++LK M R + + +++++ + Sbjct: 221 VRILYLYPATTTKRLIRKIFSSKNVVNYFDIPIQHITPKMLKIMKRPGSVNKLKELLNEM 280 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 + R D + + IVG PGE+ +DF M +++ + + F YS T Sbjct: 281 K--REDSFVRTSIIVGHPGESHEDFEELMQFLEEYNFDRVNVFAYSDEENT 329 >gi|217032136|ref|ZP_03437635.1| hypothetical protein HPB128_186g2 [Helicobacter pylori B128] gi|216946126|gb|EEC24735.1| hypothetical protein HPB128_186g2 [Helicobacter pylori B128] Length = 354 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/315 (24%), Positives = 144/315 (45%), Gaps = 30/315 (9%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRIRN 89 S GC N+ DS M ++ Y N AD+I++NTC E A E + + L ++ Sbjct: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDAKKADVILINTCGFIESAKQESIQTILNAAKD 70 Query: 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 K EG +++ +GC+++ +EI P V++ G Y ++ ++ + Sbjct: 71 KK-----EGA--ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK------ 117 Query: 150 VDTDYSVEDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 +++F + YN + V A++ I EGC++ C+FC +P +G SR Sbjct: 118 -------QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 L ++ E L G ++T + Q+ +++ G+K L+ ++ + + L R Sbjct: 171 ELDSILKEVEDLALKGYKDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARI 228 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +P + LI A + Y +P+Q SD +LK M R + + +++D ++ V Sbjct: 229 LYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV 288 Query: 326 RPDIAISSDFIVGFP 340 + I S IVG P Sbjct: 289 KESF-IRSTIIVGHP 302 >gi|2462120|emb|CAA72027.1| bc48b [Bacillus cereus ATCC 10987] Length = 226 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/148 (38%), Positives = 90/148 (60%), Gaps = 7/148 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE S ++AD+++LNTC IRE A KV+ L Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGEL 125 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G ++ LK + DLL+ V GC++Q E +I++++ V++V G +RLP +L+ Sbjct: 126 GHLKALK----RRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGG 169 A F K V +S E D E L V G Sbjct: 182 AMFSKETVVEVWSKEGDVIENLPKVRRG 209 >gi|188529339|gb|ACD62415.1| CDKAL1-like protein [Drosophila silvestris] Length = 248 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 100/181 (55%), Gaps = 7/181 (3%) Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349 +LH+PVQSGSD +L M R + ++ ++D +RS P + I++D I GFP ET+ DF Sbjct: 19 FLHVPVQSGSDSVLGEMKREYCRKDFEHVVDLLRSRVPGLTIATDIICGFPTETEQDFEE 78 Query: 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC 409 TM L +K + F ++ PR GTP + +E++ N+ +R K+L + S+ Sbjct: 79 TMTLCEKYQFPILFINQFFPRPGTPAAK-IERIPANLVKKR----TKRLTDLFYSYEPYA 133 Query: 410 --VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 GQ+ VL+ + +K VG + + V+L + + +G ++VRIT ++ GE+ Sbjct: 134 EREGQLYTVLVTEISHDKLHYVGHNKSYEQVLLPMRKNLLGTRVRVRITSSSKFSMMGEI 193 Query: 468 V 468 + Sbjct: 194 L 194 >gi|261339142|ref|ZP_05967000.1| hypothetical protein ENTCAN_05363 [Enterobacter cancerogenus ATCC 35316] gi|288318985|gb|EFC57923.1| RNA modification enzyme, MiaB family [Enterobacter cancerogenus ATCC 35316] Length = 272 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 126/258 (48%), Gaps = 31/258 (12%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P + S GC N+ DS R+ ++GY+ V S D+AD++++NTC + A ++ Sbjct: 7 PPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDNADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G + E G V+V GC+ A+ ++I P V + GP +Y ++ E + Sbjct: 67 IGEA-------LTENGK--VIVTGCLG-AKVDQIREVHPKVLEITGPHSYEQVLEHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW------RGKGLDGE--KCTFSDLLYS 253 +SR + +V+ EA++L D GV E+ ++ Q+ +A+ R +GE K + L Sbjct: 166 LVSRPIGEVLAEAKRLADAGVKELLVISQDTSAYGVDVKHRSGFHNGEPVKTSMVGLCEQ 225 Query: 254 LSEIKGLVRLRYTTSHPR 271 L+++ RL Y +P Sbjct: 226 LAKLGIWTRLHYVYPYPH 243 >gi|220928478|ref|YP_002505387.1| radical SAM protein [Clostridium cellulolyticum H10] gi|219998806|gb|ACL75407.1| Radical SAM domain protein [Clostridium cellulolyticum H10] Length = 416 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 87/380 (22%), Positives = 168/380 (44%), Gaps = 51/380 (13%) Query: 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 C D +++E + GYE V AD IV TC + A+ ++ + R+++L Sbjct: 12 NCSRRQMDMVKLESYLSANGYEVVEDEKQADQIVYTTCGFINETAQVAFNEIERLKSLPA 71 Query: 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT 152 ++V GC+ + E + GK V +T Sbjct: 72 E---------LIVTGCLPDTDSE-----------------------TFNKIHSGKVVRNT 99 Query: 153 D-YSVEDKF---ERLSIVDGGYNRKRGVTAFLTIQ--EGCDKFCTFCVVPYTRGIEISRS 206 + Y +D F + + ++ G + ++ GC + C++C + G S+ Sbjct: 100 ELYKFDDVFGGDTKFQDIPDAHDMPWGKGEYFCVEVSRGCPENCSYCATKWAVGKMKSKP 159 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + + ++E + + ++ + G NV A+ GLD ++ TF L+ +L + Sbjct: 160 IQKCIEEIEEFKKSTFSKVVINGDNVGAY---GLDIKE-TFGTLVSALPIEDEKYKAYID 215 Query: 267 TSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 + HPR + D ++ A M L +Q+G++R+L+ M R+ + ++ I+ Sbjct: 216 SLHPRWLLLYYDAVLAAISKNRFGM--LVSAIQAGNERVLELMRRKADMKKLKEAFIEIK 273 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLV--DKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 P+I + ++ IVGFP E++ DF ++D + K+ + F+F SP+ GT + + Q Sbjct: 274 QKSPEIVLGTEVIVGFPTESESDFIESVDFILSTKLDWGNIFAF--SPKKGTEAAAIKGQ 331 Query: 382 VDENVKAERLLCLQKKLREQ 401 V+E K R+ L +KL+E Sbjct: 332 VEEAEKIRRINYLVEKLKEN 351 >gi|265985466|ref|ZP_06098201.1| conserved hypothetical protein [Brucella sp. 83/13] gi|264664058|gb|EEZ34319.1| conserved hypothetical protein [Brucella sp. 83/13] Length = 266 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 86/282 (30%), Positives = 126/282 (44%), Gaps = 38/282 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ S+GYE D ADL+++NTC + A ++ Sbjct: 4 PRVSFV-SLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLEA 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 + N E G V+V GC+ AE + I R P V + GPQ Y + Sbjct: 63 ISLALN-------ENGK--VIVTGCLG-AEPDVIRERHPNVLAITGPQAYESV------- 105 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 V + D F L G R A+L I EGC C+FC++P RG + Sbjct: 106 --MNAVHEVAPPAHDPFVDLVPPQGVKLTPRHY-AYLKISEGCSNRCSFCIIPALRGDLV 162 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-----------KCTFSDLLY 252 SR +++V+ EA KL+ V EI ++ Q+ +A+ GLD + + F DL Sbjct: 163 SRPINEVLREAEKLVQADVKEILVISQDTSAY---GLDIKYQEAMWQDRTVRTKFLDLSR 219 Query: 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP 294 L E+ VR+ Y +P + A G ++PYL P Sbjct: 220 ELGEMGVWVRMHYVYPYPHVDEVIPLMAEGK---ILPYLIFP 258 >gi|213585311|ref|ZP_03367137.1| hypothetical protein SentesTyph_30295 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 221 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 110/214 (51%), Gaps = 24/214 (11%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPHYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ + + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGD 165 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 +SR + V+ EA++L+D GV EI ++ Q+ +A+ Sbjct: 166 LVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAY 199 >gi|156101079|ref|XP_001616233.1| tRNA modifying enzyme [Plasmodium vivax SaI-1] gi|148805107|gb|EDL46506.1| tRNA modifying enzyme, putative [Plasmodium vivax] Length = 799 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 143/292 (48%), Gaps = 31/292 (10%) Query: 99 GDLLVVVAGCVAQAEGE-EILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVE 157 GD+ ++V GCV QAE + EI +V V ++ +++E G Y+V Sbjct: 435 GDIKIIVCGCVPQAEKDMEIFENVSLVGVT----NIDKIVDVVENVING-------YNVR 483 Query: 158 --DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEAR 215 + ++++ ++ RK + I GC CT+C + RG S ++ +++ + Sbjct: 484 YLKQAKKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDLASYNIPDIINRIK 543 Query: 216 KLI-DNGVCEITLLGQNVNAWRGKGLDGEKCT---FSDLLYSLSEIKGLVRL-----RYT 266 + + + EI L ++ A+ G+D ++L ++S ++RL Y Sbjct: 544 HVCSEENIKEIWLTSEDTGAY---GIDLNTNIVKLLKEILDTISNSDVMIRLGMTNPPYI 600 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 H +D+ C + H ++ ++H+PVQSGS+R+LK+MNR + ++ +++ +R Sbjct: 601 LKHVKDI--CNLLKHKNM---YEFIHIPVQSGSNRVLKNMNREYEIEDFIYLVENLRKDV 655 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 P+I I++D I GFP E + D T+DLV K + ++ PR GT M Sbjct: 656 PNITIATDIICGFPYEMEKDHVETVDLVKKYQFPILNISQFYPRRGTVAYGM 707 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 19/80 (23%), Positives = 47/80 (58%), Gaps = 4/80 (5%) Query: 18 VDQC--IVPQRF--FVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIR 73 +++C I+P+++ + KS+GC N DS M + + G++ V S+++ D+ ++N+C ++ Sbjct: 245 LNECGIILPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVK 304 Query: 74 EKAAEKVYSFLGRIRNLKNS 93 + E + + + + L + Sbjct: 305 NPSEESMKTIINYVNKLNKA 324 >gi|224373407|ref|YP_002607779.1| hypothetical protein NAMH_1386 [Nautilia profundicola AmH] gi|223589096|gb|ACM92832.1| conserved hypothetical protein [Nautilia profundicola AmH] Length = 432 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 93/385 (24%), Positives = 192/385 (49%), Gaps = 40/385 (10%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++ S GC N+ DS M ++ Y ++ +ADL+++NTC A E+ + Sbjct: 2 KKLYLASLGCVKNLIDSEVMLGKLKNE-YTLTDNPGEADLLIVNTCGFINPAKEESIETI 60 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE--R 142 + N K KE ++ V GC+++ + + + P V+V G + ++ EL++ Sbjct: 61 LELANEK----KESA--ILAVTGCLSERYKDILPKEIPEVDVWSGVGDFDKIDELVKTKS 114 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 ++F V Y + ++ ER+ I Y+ A++ + EGC++ C FC +P +G Sbjct: 115 SKFSPNV----YLIHNE-ERV-ITGSSYH------AYIKLSEGCNQKCAFCAIPNFKGRL 162 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGL- 260 SR + ++++E ++L G + +L Q+ +++ R KG+ K L+ + +I+G+ Sbjct: 163 NSREIPEIIEEIKRLKAQGFKDFSLASQDSSSYLRDKGI---KDGLERLIDEIDKIEGIT 219 Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 VR+ Y +P + LI+ V+ Y +P+Q S+++LK M R + +D Sbjct: 220 VRILYL--YPATTTKKLIRRIFASPVVENYFDMPIQHISEKMLKIMRRPGS-------VD 270 Query: 321 RIRSVRPDIA-----ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 +++S+ ++ I + IVG PGE+++DF + + + + + F YS T Sbjct: 271 KLKSLLYEMKKEFSFIRTSVIVGHPGESEEDFEELKNFIKEFEFDRVNVFAYSDEEDTAA 330 Query: 376 SNMLEQVDENVKAERLLCLQKKLRE 400 +++ +N+ +R L K +++ Sbjct: 331 FKRKDKISQNIIDQRAKELGKTVKQ 355 >gi|76156036|gb|AAX27274.2| SJCHGC03417 protein [Schistosoma japonicum] Length = 228 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 17/196 (8%) Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 + P +HLP QSGS +L++M R +T Y +++ IR + P+++++SDFI GF GET++D Sbjct: 8 ICPNIHLPAQSGSSVVLENMRRGYTRQAYMELVATIREIIPNVSLTSDFIAGFCGETEED 67 Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSF 405 T++L++++GY+ + F YS R T + L + V VK R L R + + F Sbjct: 68 HSQTLELIERVGYSFCYCFPYSMREKTFAYHHLTDDVPAEVKRRRFNELLVLSRNKSLEF 127 Query: 406 NDACVGQIIEVLIEKHG-KEKGKLVGRSP-----------WLQSVVLNSKNHNI----GD 449 N +G + VL E + ++ GR+ L S N+K+ I GD Sbjct: 128 NRKQIGTVQLVLAEGPSRRSTSQVFGRNDCNIKVIFDQEVTLPSTTANNKSSRILVKPGD 187 Query: 450 IIKVRITDVKISTLYG 465 + V+I D TL G Sbjct: 188 YVVVKIVDATSQTLRG 203 >gi|260220928|emb|CBA28986.1| Ribosomal protein S12 methylthiotransferase rimO [Curvibacter putative symbiont of Hydra magnipapillata] Length = 507 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 85/305 (27%), Positives = 131/305 (42%), Gaps = 41/305 (13%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 P+ FV S GC + DS + ++GY+ + ADL+++NTC + A ++ Sbjct: 25 APKVGFV-SLGCPKALTDSELILTQLSAEGYQTSKTFQGADLVIVNTCGFIDDAVKESLD 83 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAE---GEEILRR-SPIVNVVVGPQTYYRLPE 138 +G +N R V+V GC+ GE ++R+ P V V GP E Sbjct: 84 TIGEALA-ENGR--------VIVTGCLGAKTTDGGENMVRQMHPKVLAVTGPHATQ---E 131 Query: 139 LLERARFGKRVVDTDYSVEDKFERL---SIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 +++ D F L S G A+L I EGC+ CTFC++ Sbjct: 132 VMDAVHLNLP------KPHDPFLDLVPQSFGVAGVKLTPRHYAYLKISEGCNHRCTFCII 185 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGLDGEK 244 P RG +SR + V+ EAR L + GV E+ ++ Q+ +A W GK + Sbjct: 186 PSMRGDLVSRPIGDVLSEARALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPVKTRM 245 Query: 245 CTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 L L+E G VRL Y +P + A G ++PYL +P+Q +L Sbjct: 246 LELVQALGELAEPYGAWVRLHYVYPYPSVDEIVPLMATGR---VLPYLDVPLQHSHPDVL 302 Query: 304 KSMNR 308 + M R Sbjct: 303 RRMKR 307 >gi|224418855|ref|ZP_03656861.1| 2-methylthioadenine synthetase [Helicobacter canadensis MIT 98-5491] Length = 278 Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/291 (24%), Positives = 138/291 (47%), Gaps = 20/291 (6%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVY 81 + ++ + S GC N+ DS M YE +++AD++++NTC E A E + Sbjct: 1 MQKKLHLISLGCTKNLVDSEVMLGKLSE--YENTQEINEADVVIVNTCGFIEAAKKESIQ 58 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 + L + K I +V +GC+++ +E+ P ++++ G Y ++ +++E Sbjct: 59 TLLEALETKKQGAI-------LVASGCLSERYAKELKEEIPELDIITGVGDYDKIDKMIE 111 Query: 142 RARFGKRVVDTDYSV--EDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + G++++ V D+ + I+ G + A++ + EGC++ C+FC +P + Sbjct: 112 ERQKGEKILSNAKGVFLADETNK-RIISGS-----KIHAYIKLSEGCNQKCSFCAIPSFK 165 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW-RGKGL-DGEKCTFSDLLYSLSEI 257 G SR+L + E R L G + T + Q+ +++ R G+ DG S + E Sbjct: 166 GKLHSRTLESTLKEVRNLASQGYSDFTFISQDSSSYLRDLGIKDGLVELISGIEDLAKEG 225 Query: 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 + R +P S LI+ D + Y +P+Q S ++LK+M R Sbjct: 226 VNIKSARILYLYPATTSKKLIQKIIDSPIFHNYFDMPLQHASQKVLKTMGR 276 >gi|86150486|ref|ZP_01068711.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839081|gb|EAQ56345.1| MiaB-like tRNA modifying enzyme [Campylobacter jejuni subsp. jejuni CF93-6] Length = 256 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 138/279 (49%), Gaps = 26/279 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ F K++GC+ N+YD+ ++ + + YE +N + A +IV+N+C + A + S Sbjct: 1 MKEKVFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 58 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 ++ N+ K+G + V++ GC A ++G+E+L + + V+ G ++ E L Sbjct: 59 YV-------NTMQKKG--IKVILTGCGAVSKGKELLDKKQVFGVL-GASNKDKINEFLGA 108 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + ++ +D IV N + AF+ IQEGCD C++C++P RG Sbjct: 109 KTSFYELGNLNFIDKD------IVCEYENHTK---AFVKIQEGCDFACSYCIIPSVRGKS 159 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S ++ + L NG EI L G N+ ++ GL T LL + +I G+ R Sbjct: 160 RSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLK-NGTTLGKLLQKMGQILGIKR 215 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDR 301 +R + P + + ++ D L +LH+ +Q S + Sbjct: 216 IRLGSLEPAQLDESFLEIL-DEAWLERHLHIALQHTSXK 253 >gi|315928738|gb|EFV08014.1| uncharacterized protein family UPF0004 family protein [Campylobacter jejuni subsp. jejuni 305] Length = 255 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 136/274 (49%), Gaps = 26/274 (9%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYS 82 + ++ F K++GC+ N+YD+ ++ + + YE +N + A +IV+N+C + A + S Sbjct: 6 IERKSFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKS 63 Query: 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 ++ N+ K+G + V++ GC A ++G+E+L + + V+ G ++ E L Sbjct: 64 YV-------NTMQKKG--IKVILTGCGAVSKGKELLDKKQVFGVL-GASNKDKINEFLGA 113 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 + + ++ +D IV N + AF+ IQEGCD C++C++P RG Sbjct: 114 KTSFYELGNLNFIDKD------IVCEYENHTK---AFVKIQEGCDFACSYCIIPSVRGKS 164 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S ++ + L NG EI L G N+ ++ GL + LL + +I G+ R Sbjct: 165 RSVDEKALLKQVEILGANGYSEIVLTGTNIGSY---GLK-NGTSLGKLLQKMGQISGIKR 220 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 +R + P + + ++ D L +LH+ +Q Sbjct: 221 IRLGSLEPAQIDESFLEIL-DETWLERHLHIALQ 253 >gi|268609252|ref|ZP_06142979.1| 2-methylthioadenine synthetase [Ruminococcus flavefaciens FD-1] Length = 169 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 70/115 (60%) Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 MNR++TA EY Q+ +RIR + PD + ++D +VGFP ET +DF + + V KIG+A+ F Sbjct: 1 MNRKYTAEEYYQLTERIRKIFPDCSFTTDVMVGFPQETGEDFAESAEFVKKIGFAKVHVF 60 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 +YS R GT M QV ENVK ER + E + + + VG+ + VL E+ Sbjct: 61 RYSRRHGTRADKMDGQVPENVKTERWQKMTAAAGECREKYLASLVGKTVPVLFER 115 >gi|156185984|gb|ABU55310.1| MiaB-like tRNA modifying enzyme [Callosobruchus chinensis] Length = 165 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 11/173 (6%) Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 S ++ ++++ R +NG E+ G ++ + G L + S + L +I L RL Sbjct: 3 SVPINSIIEQIRIFAENGYQEVVFTGVDITDF-GTDLFAKPSLGSMIRRVLKDIPELKRL 61 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 R ++ I + LMP+LHL +QSG++ ILK M RRH + + +++ Sbjct: 62 RLSS----------IDLIANESRLMPHLHLSLQSGNNLILKRMKRRHNREQVIEFCHKMK 111 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 S+RP+IA +D I GFP ETD+ F+ T+DL+ K +F YS R TP + Sbjct: 112 SLRPNIAFGADIIAGFPTETDEMFQDTVDLLKKTNIVYLHAFPYSERKNTPAA 164 >gi|322513299|ref|ZP_08066420.1| MiaB family RNA modification enzyme [Actinobacillus ureae ATCC 25976] gi|322120898|gb|EFX92750.1| MiaB family RNA modification enzyme [Actinobacillus ureae ATCC 25976] Length = 254 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/268 (27%), Positives = 120/268 (44%), Gaps = 40/268 (14%) Query: 50 SQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109 + GY + S ++ADL+++NTC + A ++ +G ++E G V+V GC+ Sbjct: 3 TDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGE-------ALQENGK--VIVTGCL 53 Query: 110 AQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169 E + I P V + G +Y + ++ R Y+ + + + Sbjct: 54 GAKENQ-IREVHPKVLEITGSHSYEA--AMQHVHKYVPRPERNIYTSLVPAQGVKLTPKH 110 Query: 170 YNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229 Y A+L I EGCD CTFC++P RG SR + QV+DEA++L D+GV E+ ++ Sbjct: 111 Y-------AYLKISEGCDHRCTFCIIPSMRGDLDSRPIVQVLDEAKRLADSGVKELLIVS 163 Query: 230 QNVNA---------------WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS 274 Q+ +A W G + T + L +L VRL Y +P Sbjct: 164 QDTSAYALDQSKENQNKTVFWNGAPIKNNLITLCEQLGTLGI---WVRLHYVYPYPHVDD 220 Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRI 302 + A G ++PYL +P+Q S I Sbjct: 221 LIPLMAQGK---ILPYLDIPLQHASPSI 245 >gi|288926974|ref|ZP_06420870.1| 2-methylthioadenine synthetase [Prevotella buccae D17] gi|288336257|gb|EFC74642.1| 2-methylthioadenine synthetase [Prevotella buccae D17] Length = 275 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 131/291 (45%), Gaps = 35/291 (12%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVN--SMDDADLIVLNTCHIREKAA-EKVYSFLGRI 87 + GC N+ DS + F + GY V+ + ++ V+NTC E A E + + L + Sbjct: 10 TMGCSKNLVDSEVLMKQFEANGYRCVHDAAHPQGEIAVINTCGFIETAKQESINTILEFV 69 Query: 88 RNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF-- 145 + R+ + + V GC++Q +E+ P V+ G Y +L L +A Sbjct: 70 QAKTEGRLNK-----LYVMGCLSQRYKDELEAEIPEVDKFYGKFNYKQLLADLGKAELPS 124 Query: 146 --GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 G+R + T A+L I EGCD+ C +C +P G + Sbjct: 125 CNGRRHLTTPRHY---------------------AYLKIAEGCDRHCAYCAIPLMTGRHV 163 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +++DE R+L+ GV E ++ Q + + G LDG ++L+ +++I G+ + Sbjct: 164 SRPMDEILDEVRELVAGGVKEFQVIAQELTYY-GIDLDGHH-HIAELISRMADIPGVKWI 221 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 R ++P L+ + + YL + +Q SD IL M+R T E Sbjct: 222 RLHYAYPNQFPMDLLDVMRERPNVCRYLDIALQHISDHILSRMHRHVTKQE 272 >gi|270702409|ref|ZP_06223065.1| Fe-S oxidoreductase [Haemophilus influenzae HK1212] gi|270315832|gb|EFA27939.1| Fe-S oxidoreductase [Haemophilus influenzae HK1212] Length = 144 Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 50/127 (39%), Positives = 74/127 (58%), Gaps = 3/127 (2%) Query: 261 VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 VRL Y +P D LI D L+PYL +P+Q S +ILK+M R + + I Sbjct: 21 VRLHYVYPYPH--VDDLIPLMAD-GTLLPYLDIPLQHASPKILKAMKRPGSIDRTLERIK 77 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + R + PD+ + S FIVGFPGET++DF+ +D + + + FK+SP G P ++M + Sbjct: 78 QWREICPDLTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAPATDMAD 137 Query: 381 QVDENVK 387 QV E+VK Sbjct: 138 QVPEDVK 144 >gi|28804570|dbj|BAC57983.1| hypothetical protein [Leptospira interrogans] Length = 264 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 67/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%) Query: 42 LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL 101 + M +G+ + +++D +NTC + A E+ + L +++K+ Sbjct: 1 MSMHHSLLEEGFTPASLPEESDFHFINTCTFIQSATEETIQTI-----LSAAQVKKQNHQ 55 Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161 +VV GC A+ + I P V++ G Y + ++L R +F + + E Sbjct: 56 KLVVVGCFAERYPDNIHSEIPEVDLFFGTGKYSQAGKIL-REKFPELSPSQLEFNDSLLE 114 Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221 R + N + A++ + +GC++ C+FC++P RG + L ++ + + I G Sbjct: 115 RWKLSSKIENYSKPY-AYVKVSDGCNRGCSFCIIPSFRGKFVESPLDDILRDTNRAIRAG 173 Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281 EI L+ Q+ + G D E D++ ++EI L LR +P ++ LI+ Sbjct: 174 AKEICLVSQDTVYY---GRDSE--ILLDMVRKVAEIDSLEILRLLYLYPDKKTEKLIRLM 228 Query: 282 GDLDVLMPYLHLPVQSGSDRILKSMNR 308 G+ + PYL P+Q S +ILK MNR Sbjct: 229 GETSKIAPYLESPLQHVSSKILKVMNR 255 >gi|147677218|ref|YP_001211433.1| hypothetical protein PTH_0883 [Pelotomaculum thermopropionicum SI] gi|146273315|dbj|BAF59064.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 165 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 94/168 (55%), Gaps = 7/168 (4%) Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M RR+TA+EY ++ + +R P + +++D +VGFPGET ++F T ++K+ +++ F Sbjct: 1 MGRRYTAWEYYRLAEVLRENLPGLGLTTDVMVGFPGETGENFANTCRFIEKVSFSRLHVF 60 Query: 366 KYSPRLGTPGSNMLEQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 K+SPR GTP + +QV+ VK ER LL L +KL F +G ++VL E+ Sbjct: 61 KFSPRRGTPAAGFGDQVEPPVKEERSRALLELGEKL---SARFASLHIGLELDVLAEQPF 117 Query: 423 KEKGKLV-GRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 +E+ L G + VV + G I++V+ ++ L G +++ Sbjct: 118 QERSGLYEGLTGNYLRVVFPGNDELKGKIVRVKAEKLRDGLLEGSIII 165 >gi|330878023|gb|EGH12172.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 215 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/217 (31%), Positives = 108/217 (49%), Gaps = 29/217 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC + DS R+ +GYE V + +DAD++V+NTC + A + Sbjct: 10 PKVGFV-SLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEV 68 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G IKE G V+V GC+ + I P V V GPQ Y Sbjct: 69 IGE-------AIKENGK--VIVTGCMG-VDANVIRDVHPSVLSVTGPQQY---------- 108 Query: 144 RFGKRVVDTDYSV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++VV+ + V +D + +V G A+L I EGC+ C+FC++P Sbjct: 109 ---EQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSM 165 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 RG +SR + V+DEA++L+ +GV E+ ++ Q+ +A+ Sbjct: 166 RGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTSAY 202 >gi|237833257|ref|XP_002365926.1| radical SAM domain-containing protein [Toxoplasma gondii ME49] gi|211963590|gb|EEA98785.1| radical SAM domain-containing protein [Toxoplasma gondii ME49] gi|221508888|gb|EEE34457.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii VEG] Length = 867 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 18/237 (7%) Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221 RL +D R+ + + I GC CT+C + RG S + ++ G Sbjct: 549 RLPSLDLPKIRRNNLVEIVPISTGCLGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEG 608 Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL------SEIKGLVRLRYTTSHPRDM-- 273 V +I L ++ A+ GLD + + + LL L + + LR S+P + Sbjct: 609 VKQIWLTSEDSGAY---GLD-RQSSLTGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQ 664 Query: 274 ---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 S + +H ++ +LHLP+QSGS+ +L +MNR +TA ++ +++ + P + Sbjct: 665 QLKSAVQVFSHPNV---FEFLHLPLQSGSNDVLLAMNREYTAEQFEVVVETLLKHFPRMT 721 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 I++D I GFPGETD+D T+ ++ K + ++ PR GTP ++M + + VK Sbjct: 722 IATDIICGFPGETDEDHERTLAIIRKFKFPVVNISQFYPRPGTPAASMKQLPSQVVK 778 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 37/60 (61%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 QR FVK++GC N DS M + + GY V+ M+DAD+ ++N+C ++ + +YS + Sbjct: 279 QRIFVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEDADVCLINSCTVKSPSEFALYSVI 338 >gi|221488386|gb|EEE26600.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii GT1] Length = 867 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 18/237 (7%) Query: 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG 221 RL +D R+ + + I GC CT+C + RG S + ++ G Sbjct: 549 RLPSLDLPKIRRNNLVEIVPISTGCLGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEG 608 Query: 222 VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL------SEIKGLVRLRYTTSHPRDM-- 273 V +I L ++ A+ GLD + + + LL L + + LR S+P + Sbjct: 609 VKQIWLTSEDSGAY---GLD-RQSSLTGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQ 664 Query: 274 ---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 S + +H ++ +LHLP+QSGS+ +L +MNR +TA ++ +++ + P + Sbjct: 665 QLKSAVQVFSHPNV---FEFLHLPLQSGSNDVLLAMNREYTAEQFEVVVETLLKHFPRMT 721 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 I++D I GFPGETD+D T+ ++ K + ++ PR GTP ++M + + VK Sbjct: 722 IATDIICGFPGETDEDHERTLAIIRKFKFPVVNISQFYPRPGTPAASMKQLPSQVVK 778 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 37/60 (61%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 QR FVK++GC N DS M + + GY V+ M+DAD+ ++N+C ++ + +YS + Sbjct: 279 QRIFVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEDADVCLINSCTVKSPSEFALYSVI 338 >gi|213616143|ref|ZP_03371969.1| MiaB protein (putative tRNA-thiotransferase (or tRNA-methylthiotransferase)) [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|289805050|ref|ZP_06535679.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 97 Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 45/98 (45%), Positives = 67/98 (68%), Gaps = 5/98 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMF-FSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ + GY+ + ++AD+++LNTC IREKA EKV+ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121 LGR R LK ++ DL++ V GCVA EGE I +R+ Sbjct: 63 LGRWRLLK----EKNPDLIIGVGGCVASQEGEHIRQRA 96 >gi|294631788|ref|ZP_06710348.1| MiaB family RNA modification enzyme [Streptomyces sp. e14] gi|292835121|gb|EFF93470.1| MiaB family RNA modification enzyme [Streptomyces sp. e14] Length = 491 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 2/212 (0%) Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276 L + GV EI L+ +N N GK L G+ LL L+E+ G+ R+R + P +M Sbjct: 225 LAEQGVKEIMLVSEN-NTSYGKDL-GDIRLLESLLPELAEVDGIERVRVSYLQPAEMRPG 282 Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336 LI + PY L Q + +L++M R + +++D IRS P + S+FI Sbjct: 283 LIDVLTSTPKVAPYFDLSFQHSAPGVLRAMRRFGDTDRFLELLDTIRSKAPQAGVRSNFI 342 Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396 VGFPGE++ D ++ F YS GT + ++D++V ERL + + Sbjct: 343 VGFPGESEADLAELERFLNGARLDAIGVFGYSDEEGTEAATYENKLDQDVVDERLAHISR 402 Query: 397 KLREQQVSFNDACVGQIIEVLIEKHGKEKGKL 428 E + +G+ + VL+E E+G L Sbjct: 403 LAEELVSQRAEERLGETVRVLVESVDAEEGAL 434 Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 6/121 (4%) Query: 23 VPQRFFVK--SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 +P+R V + GC N DS + + G++ V DAD+ V+NTC E A + Sbjct: 1 MPERRTVALVTLGCARNEVDSEELAGRLEADGWQLVEDAADADVAVVNTCGFVEAAKKDS 60 Query: 81 YSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 L +LK+ G VV GC+A+ G+E+ P + V+G Y + + L Sbjct: 61 VDALLEANDLKD----HGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYADISDRL 116 Query: 141 E 141 + Sbjct: 117 Q 117 >gi|325118100|emb|CBZ53651.1| putative radical SAM domain-containing protein [Neospora caninum Liverpool] Length = 863 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 116/238 (48%), Gaps = 18/238 (7%) Query: 161 ERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN 220 +RL +D R+ + + I GC CT+C + RG S + + + Sbjct: 544 KRLPSLDLPKIRRNALVEIVPISTGCLGSCTYCKTKHARGELGSYPEEAIETRIEASLLD 603 Query: 221 GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL------SEIKGLVRLRYTTSHPRDM- 273 GV +I L ++ A+ GLD + + + LL L + LR S+P + Sbjct: 604 GVKQIWLTSEDSGAY---GLD-RQSSLTSLLARLLRNVFDRRADPSLMLRVGMSNPPFLL 659 Query: 274 ----SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 S + AH ++ +LHLP+QSGS+ +L +MNR +TA ++ +++ + P + Sbjct: 660 QQLKSAVQVFAHPNV---FEFLHLPLQSGSNDVLLAMNREYTAEQFEVVVETLLKHFPRM 716 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 I++D I GFPGET++D T+ ++ K + ++ PR GTP ++M + + VK Sbjct: 717 TIATDIICGFPGETEEDHEKTLAIIKKFKFPVVNISQFYPRPGTPAASMKQLPSQIVK 774 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 37/60 (61%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ +VK++GC N DS M + + GY V+ M++AD+ ++N+C ++ + +YS + Sbjct: 272 QKIYVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEEADVCLINSCTVKSPSEFALYSVI 331 >gi|253742055|gb|EES98909.1| tRNA 2-methylthioadenosine synthase [Giardia intestinalis ATCC 50581] Length = 525 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 83/280 (29%), Positives = 129/280 (46%), Gaps = 36/280 (12%) Query: 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARK-LIDNGVCEITLLG 229 +R + + GC CT+C ++RG S L ++ R L D + E+ L G Sbjct: 202 HRANPIIDIIATGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIRSSLADPVIRELWLTG 261 Query: 230 QNVNAW-RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM----SDCLIKAHGDL 284 ++ AW R G TF+ LL EI+ L+ T + D +I L Sbjct: 262 EDTLAWGRDSG-----TTFAALL---QEIQKLLETENPTHKMLKIGMTDPDSVINQEDSL 313 Query: 285 DVLM------PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338 M +LHLPVQSGSDRIL M R + + +++S PD+ + +D I G Sbjct: 314 ISFMQCKYVYKFLHLPVQSGSDRILTLMRRHYDIGTFLASCSKLQSAIPDLCLDTDIICG 373 Query: 339 FPGETDDDFRATMDLVDKIGY-AQAFSF----KYSPRLGTPGSNMLEQVDENVKAERLLC 393 FPGETD+D +++L + A F +Y R TP ++M EQV + K ER Sbjct: 374 FPGETDEDHAQSLNLFRNLSKDAPRFQVVNITQYYARKNTPAASM-EQVPASKKRERTRE 432 Query: 394 LQKKLREQQVSF-NDACVGQIIEVLI------EKHGKEKG 426 + + ++ SF D GQ+ ++++ E HG++ G Sbjct: 433 MSEVVKG---SFRRDQYHGQVHDIMVLEKLQTEGHGRKYG 469 >gi|256079507|ref|XP_002576028.1| radical sam proteins [Schistosoma mansoni] gi|238661286|emb|CAZ32263.1| radical sam proteins, putative [Schistosoma mansoni] Length = 184 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 78/130 (60%), Gaps = 1/130 (0%) Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350 +HLP QSGS +L++M R +T Y ++++ I + P+++++SDFI GF GET++D + Sbjct: 52 IHLPAQSGSSVVLENMRRGYTRQAYMELVNTIHEIVPNVSLTSDFIAGFCGETEEDHSQS 111 Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNML-EQVDENVKAERLLCLQKKLREQQVSFNDAC 409 ++L++++GY+ F F YS R T + L + V VK R L R + + FN Sbjct: 112 LELIERVGYSFCFCFPYSMREKTFAYHHLTDDVPIEVKKRRHDELAMISRNKSLEFNQKQ 171 Query: 410 VGQIIEVLIE 419 +G I VL+E Sbjct: 172 IGTIQIVLVE 181 >gi|270676233|ref|ZP_06222691.1| Fe-S oxidoreductase [Haemophilus influenzae HK1212] gi|270316429|gb|EFA28315.1| Fe-S oxidoreductase [Haemophilus influenzae HK1212] Length = 189 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 104/207 (50%), Gaps = 32/207 (15%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P FV S GC N+ DS R+ + GY V S ++ DL+++NTC + A ++ Sbjct: 9 PSIGFV-SLGCPKNLVDSERILTELRTDGYNIVPSYENVDLVIVNTCGFIDSAVQESLES 67 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G ++E G V+V GC+ E ++I P V V GP +Y + + + Sbjct: 68 IGE-------ALEENGR--VIVTGCLGAKE-DQIREVHPKVLEVSGPHSYEAV--MAQVH 115 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT------AFLTIQEGCDKFCTFCVVPY 197 ++ + Y +S+V K+GV A+L I EGCD CTFC++P Sbjct: 116 KYVPKPTHNPY--------ISLVP-----KQGVKLTPKHYAYLKISEGCDHRCTFCIIPS 162 Query: 198 TRGIEISRSLSQVVDEARKLIDNGVCE 224 RG SRS++QV+DEA++L + GV E Sbjct: 163 MRGDLESRSITQVLDEAKRLAEAGVKE 189 >gi|256069402|ref|XP_002571132.1| radical sam proteins [Schistosoma mansoni] gi|238652163|emb|CAZ38817.1| radical sam proteins, putative [Schistosoma mansoni] Length = 206 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%) Query: 36 MNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRI 95 MN D+ + GY V S + D ++L TC IR+ A K++ + +R+L + Sbjct: 1 MNRSDANIAHSLLTKAGYTIVPSDEQCDTVLLMTCAIRDSAEVKIWRRIQHLRSLHRKYV 60 Query: 96 KEGGDLLVVVAGCVAQAEGEEILRRSPI---------------------VNVVVGPQTYY 134 K G V GC+A+ +++L + + V GP +Y Sbjct: 61 KIG------VLGCMAKRLKDKLLMDNSCKTSKAGDLQSSSFGHNSFNVAADFVCGPDSYR 114 Query: 135 RLPELLERARFGKRVVDTDYSVEDKFERLSIV------DGGYNRKRGVTAFLTIQEGCDK 188 LP+L+E A G + S+E+ + ++ V D + TAFL++ GCD Sbjct: 115 DLPKLIEDAHSGLKGASVALSLEETYADVTPVRRHFTTDESSDPVLSPTAFLSVMRGCDN 174 Query: 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLID 219 CT+C+VP+ RG E SR L ++ EA+ L + Sbjct: 175 MCTYCIVPFVRGRERSRPLDSILHEAQSLFN 205 >gi|162708468|gb|ABY19632.1| hypothetical protein [Pseudomonas syringae pv. apii] gi|162708470|gb|ABY19633.1| hypothetical protein [Pseudomonas syringae pv. tomato] gi|162708472|gb|ABY19634.1| hypothetical protein [Pseudomonas syringae pv. tomato str. JL1065] gi|162708474|gb|ABY19635.1| hypothetical protein [Pseudomonas syringae pv. tomato] gi|162708476|gb|ABY19636.1| hypothetical protein [Pseudomonas syringae pv. antirrhini str. 126] Length = 239 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 32/227 (14%) Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154 IKE G V+V GC+ + I P V V GPQ Y ++VV+ + Sbjct: 20 IKENGK--VIVTGCMG-VDASVIRAVHPSVLSVTGPQQY-------------EQVVNAVH 63 Query: 155 SV----EDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 V +D + +V G A+L I EGC+ C+FC++P RG +SR + Sbjct: 64 DVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGD 123 Query: 210 VVDEARKLIDNGVCEITLLGQNVNA------WRGKGLDGE--KCTFSDLLYSLSEIKGLV 261 V+DEA++L+ +GV E+ ++ Q+ +A +R DG+ K ++L +L + V Sbjct: 124 VLDEAKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTELCQALGSMGVWV 183 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 RL Y +P + A G ++PYL +P Q S +ILK M R Sbjct: 184 RLHYVYPYPHVDELIPLMAAGK---ILPYLDIPFQHASPKILKLMKR 227 >gi|126178341|ref|YP_001046306.1| radical SAM domain-containing protein [Methanoculleus marisnigri JR1] gi|125861135|gb|ABN56324.1| Radical SAM domain protein [Methanoculleus marisnigri JR1] Length = 435 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 9/215 (4%) Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEI 225 D G RG +A++ GC CTFC VP G I SR L ++V+E + +G + Sbjct: 147 DIGNQSVRGASAYIETHRGCIGGCTFCQVPRFFGRAIRSRPLDRIVEEVKAFSAHGATRL 206 Query: 226 TLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI-KAHGDL 284 ++ G + + G + F LL S++E+ G S P DC+ + G + Sbjct: 207 SVSGGTGSLYGSTGGEMNPEAFIGLLRSMAEVMG----PKNVSSPDIRVDCISDEILGAV 262 Query: 285 -DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343 + ++ ++SGSDR+L+ M + T + + ++R R + ++ FIVG+PGET Sbjct: 263 RQYTIGWVFFGIESGSDRVLRLMGKGATVRQVEEAVERCREH--GLRVAGSFIVGYPGET 320 Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 + D+ AT DL+ + F P TP +++ Sbjct: 321 ERDYEATKDLIAALSLDDVFVSSAEPIPATPLADL 355 >gi|156326520|ref|XP_001618638.1| hypothetical protein NEMVEDRAFT_v1g224945 [Nematostella vectensis] gi|156199651|gb|EDO26538.1| predicted protein [Nematostella vectensis] Length = 214 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 12/205 (5%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 + GC++N ++ + F +G+ERV+ + AD+ V+NTC + E A ++ + + L Sbjct: 11 TLGCKLNFSETSTIARNFQDEGFERVDFEEVADMYVINTCSVTENADKQFKQIVKKAMKL 70 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 + V GC AQ + EE L V++V+G +++ + + K + Sbjct: 71 NDK-------AFVAAVGCYAQLKPEE-LAAVDGVDLVLGATEKFKITDYIND--LAKNDM 120 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +S E E G Y+ AFL +Q+GCD CT+C +P RGI S ++ V Sbjct: 121 GEVHSCE--IEDADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDTMEGV 178 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW 235 + A+++ + G+ EI L G N+ + Sbjct: 179 LKNAKEISEKGIKEIVLTGVNIGDY 203 >gi|312137014|ref|YP_004004351.1| radical sam domain protein [Methanothermus fervidus DSM 2088] gi|311224733|gb|ADP77589.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088] Length = 429 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 22/211 (10%) Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNV 232 RG ++ GC C FC VP G E+ SR L+++V+E ++ + G I + G Sbjct: 152 RGANVYIETHRGCPGNCGFCQVPKFFGREVRSRKLNEIVNEVKEFVKMGARRIAISGGTG 211 Query: 233 NAWRGKGL-DGEKCTFSDLLYSLSEIKG-----LVRLRYTTSHPRDMSDCLIKAHGDLDV 286 + K + + F +LL +LS+I G + +R T P M +G Sbjct: 212 TLYGCKKFKEINEEAFIELLKNLSKITGKENLTIPDIRVDTVSPEIMEAISKYTNG---- 267 Query: 287 LMPYLHLPVQSGSDRILKSMNRR---HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343 ++ ++SGS++ILK MN+ T YE ++ R V+ ++ FIVG+PGET Sbjct: 268 ---WVFYGIESGSEKILKKMNKGIKIETVYEAVELA-REHGVK----VAGSFIVGYPGET 319 Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 +DDF AT+ L D + F P GTP Sbjct: 320 EDDFEATLSLADDLMLDDYFVSIAEPIPGTP 350 >gi|32480090|emb|CAE01708.1| OSJNBb0086G13.6 [Oryza sativa Japonica Group] Length = 558 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 103/437 (23%), Positives = 176/437 (40%), Gaps = 91/437 (20%) Query: 40 DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG 99 DS M + GY + ADL ++NTC ++ + + + + + ++ Sbjct: 60 DSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKSANKP------ 113 Query: 100 DLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDK 159 +VVAGCV Q G L+ ++V+ G Q R+ E++E G V Sbjct: 114 ---LVVAGCVPQ--GSRDLKELEGISVI-GVQQIDRVVEVVEETLKGHEVRLLSRKT--- 164 Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID 219 L +D RK L I GC CT+C + RG S ++ +VD + ++ Sbjct: 165 ---LPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVVS 221 Query: 220 NGVCEITLLGQNVNAWRGKGLDGEKCTFS---DLLYSLSEIKGLVRLRYTTSHPRDMSDC 276 GV EI L ++ A+ F+ DL ++ + + + R YT S R + D Sbjct: 222 EGVREIWLSSEDTGAY----------VFAPGPDLFHNYTS-QAMNR-EYTVSEFRRVVDT 269 Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336 L + L+P + I++D I Sbjct: 270 LCE-------LVPGMQ--------------------------------------IATDII 284 Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396 GFPGETD+DF T++LV + + Q ++ PR GTP + M + VK K Sbjct: 285 CGFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAARMKKVPSVEVK--------K 336 Query: 397 KLRE-----QQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDII 451 + RE + S G++ + I + + LVG + V++ + + +G Sbjct: 337 RSRELTSVFESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSA 396 Query: 452 KVRITDVKISTLYGELV 468 V+IT V +++GE++ Sbjct: 397 DVKITSVGRWSVFGEVI 413 >gi|326200994|ref|ZP_08190866.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] gi|325988562|gb|EGD49386.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] Length = 404 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 89/378 (23%), Positives = 165/378 (43%), Gaps = 46/378 (12%) Query: 43 RMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRN-LKNSRIKEGGDL 101 R+E F G++ V ++D ADL V+ C A + V+ R++N L + +K+G Sbjct: 22 RLEKYFILNGWQSVKNLD-ADLYVIVAC----GAVDFVHD---RVKNALNDISLKKGNFN 73 Query: 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161 V+ GC + + + ++ G Y +L+ ++ +Y+ FE Sbjct: 74 STVIMGC------QPVTYEGKLKSIFDGKMINYGQESMLDE------LIGAEYT----FE 117 Query: 162 RLSI---VDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLI 218 +SI + NRK + + I GC CT+CV+ G S+ + ++ +E + + Sbjct: 118 SVSIPNIFNSPVNRKNELFTII-ISTGCMMKCTYCVIKKAHGYITSKPVDEICEEFKHAV 176 Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278 G I + G + + + G ++ F L+ L I V+ HP + L+ Sbjct: 177 RLGYKNIAIGGTDTSVY-GHDINT---NFIALIKKLRAIDSTVKFYVDNLHPHN----LL 228 Query: 279 KAHGDLDVL-----MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 K D L YLH+ Q D +L M R + +I ++ V P + + + Sbjct: 229 KYRDDFIELAGQNAFSYLHIAFQHIDDVMLDRMGRTAHFEQVYAMIGEMKKVCPKLILFT 288 Query: 334 DFIVGFPGETDDDFRATMDLVDK-IGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER-- 390 DFI FPGET++ + +D V K + + Y G N +++ ++VK ER Sbjct: 289 DFICAFPGETEEQYEKLLDFVKKDTIFDYYYIHDYCDIDGAVSYNYTDKISDDVKTERCQ 348 Query: 391 -LLCLQKKLREQQVSFND 407 L+ ++ +++++S D Sbjct: 349 KLMIAFERRKDEKISLLD 366 >gi|302809011|ref|XP_002986199.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii] gi|300146058|gb|EFJ12730.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii] Length = 686 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 23/207 (11%) Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231 RK + I GC CT+C + RG S ++ V + ++ G +G N Sbjct: 91 RKNKFVEIIPINVGCLGACTYCKTKHARGHLGSYTVDTPVQRLKTVVSEG----RDIGAN 146 Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 + A LL +L + R +Y ++ +G + +L Sbjct: 147 IPA---------------LLRALVAVLPH-RQKYNAP---NLHLTASGGNGCHPCVYSFL 187 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 H+ VQSG D +L+ M R +T E+R+I+D + + P+I I++D I GFPGET +DF M Sbjct: 188 HVLVQSGRDSVLEGMKREYTFSEFRKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIM 247 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +L+ + + Q ++ PR GTP + M Sbjct: 248 ELIRECTFPQVHISQFYPRPGTPAALM 274 >gi|213026174|ref|ZP_03340621.1| isopentenyl-adenosine A37 tRNA methylthiolase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 74 Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 38/73 (52%), Positives = 52/73 (71%) Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 II ++R+ RPDI ISSDFIVGFPGET DDF TM L+ + + ++SF +S R GTP ++ Sbjct: 2 IIRKLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAAD 61 Query: 378 MLEQVDENVKAER 390 M++ V E K +R Sbjct: 62 MVDDVPEEEKKQR 74 >gi|20094234|ref|NP_614081.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19] gi|19887265|gb|AAM02011.1| Predicted Fe-S oxidoreductase [Methanopyrus kandleri AV19] Length = 435 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 85/305 (27%), Positives = 137/305 (44%), Gaps = 36/305 (11%) Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA---------------RFGK 147 V+V G V+Q E +L R P V G + LP LL+ R G+ Sbjct: 75 VIVGGPVSQVP-ELVLERFPNAIVAKG-EAETGLPPLLQTLEDEGDFEDVEGIALLRDGE 132 Query: 148 RVVDTDYSVEDKFERLSIV----DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 +VDT + + S + D G RG ++ GC CTFC VP G + Sbjct: 133 -IVDTGWPPPADLDGPSPLKVPRDLGRQDVRGANVYIETHRGCPGACTFCQVPEFFGRRV 191 Query: 204 S-RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 + + V++E R+L G + G V + G D E F +LL L+++ G Sbjct: 192 RWKPVEAVLEEVRELTRGGARRFAISGGTVTTY---GDDEED--FVELLKRLADLLG--- 243 Query: 263 LRYTTSHPRDMSDCLIK--AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 R S P +D L + D + ++ L ++SGSDRIL++M + T + + ++ Sbjct: 244 -RENVSAPDVRADLLNERLLEAIRDYTIGWIFLGIESGSDRILRAMRKGITVDDVCEAVE 302 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 R+V + ++ FIVG+PGET+DD AT +L+ ++ F P GT ++ Sbjct: 303 LARTV--GVRVAGSFIVGYPGETEDDLEATEELLTELNLDDVFINLAEPIPGTELGRLVT 360 Query: 381 QVDEN 385 ++ E Sbjct: 361 ELPEE 365 >gi|70939009|ref|XP_740104.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56517584|emb|CAH81443.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 284 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 105/210 (50%), Gaps = 18/210 (8%) Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKL-IDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248 CT+C + RG S ++ +V + + + + EI L ++ A+ G+D + Sbjct: 3 CTYCNTKFARGNLSSYNIKDIVSRIKHVYTQDNIKEIWLTSEDSGAY---GIDLNTNIVN 59 Query: 249 DLLYSLSEIK--------GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300 L L ++ G+ Y H +D+ C + H ++ ++H+PVQSGS+ Sbjct: 60 LLKEILDYVQDTDIMIRIGMTNPPYILKHVKDI--CKLLKHKNM---YEFIHIPVQSGSN 114 Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 +LK MNR + ++ ++D +R P++ I++D I GFP E+++D T++LV + Sbjct: 115 NVLKDMNREYKIEDFIYLVDNLRKYVPNMTIATDIICGFPYESENDHLETVNLVKTYKFP 174 Query: 361 QAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 ++ PR GT NM +++D + +R Sbjct: 175 ILNISQFYPRRGTVAYNM-KKIDTKIVKKR 203 >gi|330506954|ref|YP_004383382.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6] gi|328927762|gb|AEB67564.1| radical SAM domain protein [Methanosaeta concilii GP-6] Length = 430 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 10/225 (4%) Query: 167 DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEI 225 D G RG ++ GC CTFC VP G I SRS+ +VDE +++ GV + Sbjct: 140 DLGQQNVRGANVYIETHRGCLGSCTFCQVPRFFGRSIRSRSIENIVDEVKEMKRLGVKRV 199 Query: 226 TLLGQ--NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGD 283 + G ++ +R K + F +++ SLS+I G L + + +++A D Sbjct: 200 AISGGTGSLFGYRNKI---NREAFVEMIRSLSQILGKRNLSVPDMRVDLVDETVLEAVRD 256 Query: 284 LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET 343 + + L +SGSDRIL++M + T + + ++ +S+ + + FIVG+PGET Sbjct: 257 YTIGWVFFGL--ESGSDRILRAMRKGVTVEDNLRAVELAKSL--GVKVGGSFIVGYPGET 312 Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 +DF TM V++ F P GTP S + + ++V A Sbjct: 313 REDFEETMSFVEESMLDDVFVSIAEPIPGTPLSAQVLDMPKDVLA 357 >gi|195388802|ref|XP_002053067.1| GJ17100 [Drosophila virilis] gi|194151153|gb|EDW66587.1| GJ17100 [Drosophila virilis] Length = 283 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 77/137 (56%), Gaps = 1/137 (0%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R + YGCQMN D+ + + GY+R +AD+++L TC +R+ A +K+++ L Sbjct: 101 RRVHFEVYGCQMNTNDTEVVWSILQKHGYQRCEDAANADVVMLVTCAVRDGAEQKIWNRL 160 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +R LK R + L + + GC+A+ E +L + V+V+ GP +Y LP LL AR Sbjct: 161 RHLRALKERRGTKRQPLQLTILGCMAERLKERLLEQEQCVDVIAGPDSYKDLPRLLAVAR 220 Query: 145 -FGKRVVDTDYSVEDKF 160 +G ++ S+++ + Sbjct: 221 HYGNSAINVLLSLDETY 237 >gi|207092699|ref|ZP_03240486.1| hypothetical protein HpylHP_07546 [Helicobacter pylori HPKX_438_AG0C1] Length = 322 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/268 (25%), Positives = 126/268 (47%), Gaps = 10/268 (3%) Query: 157 EDKFERLSIVDGGYNRK----RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVD 212 +++F + YN + V A++ I EGC++ C+FC +P +G SR L ++ Sbjct: 1 QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILK 60 Query: 213 EARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 E L G ++T + Q+ +++ G+K L+ ++ + + L R +P Sbjct: 61 EVEDLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARILYLYPSS 118 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 + LI A + + Y +P+Q SD +LK M R + + +++D ++ V+ I Sbjct: 119 TTLELIGAIENSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKKVKESF-IR 177 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 S IVG P E + +F +D+ + + F +S T + LE+V + R+ Sbjct: 178 STIIVGHPEENEGEFEELSAFLDEFQFDRLNIFAFSAEENTHAYS-LEKVPKKTINARIK 236 Query: 393 CLQK-KLREQQVSFNDACVGQIIEVLIE 419 L K L+ Q SF A + + I+ L+E Sbjct: 237 ALNKIALKHQNHSFK-ALLNKPIKALVE 263 >gi|302806527|ref|XP_002985013.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii] gi|300147223|gb|EFJ13888.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii] Length = 353 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 23/207 (11%) Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231 RK + I GC CT+C + RG S ++ +V + ++ G +G N Sbjct: 48 RKNKFVEIIPINVGCLGACTYCKTKHARGHLGSYTVDTLVQRLKTVVSEG----RDIGAN 103 Query: 232 VNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYL 291 + L R +Y ++ +G + +L Sbjct: 104 I----------------PALLRALVAALPHRQKYNAP---NLHLTASGGNGCHPCVYSFL 144 Query: 292 HLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 H+ VQSG D +L+ M R +T E+R+I+D + + P+I I++D I GFPGET +DF M Sbjct: 145 HVLVQSGRDSVLEGMKREYTFSEFRKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIM 204 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNM 378 +L+ + + Q ++ PR GTP + M Sbjct: 205 ELIREYTFPQVHISQFYPRPGTPAALM 231 >gi|15679182|ref|NP_276299.1| phosphonoacetaldehyde methylase [Methanothermobacter thermautotrophicus str. Delta H] gi|2622278|gb|AAB85660.1| phosphonoacetaldehyde methylase [Methanothermobacter thermautotrophicus str. Delta H] Length = 438 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 84/309 (27%), Positives = 140/309 (45%), Gaps = 43/309 (13%) Query: 109 VAQAEGEEILRRSPIVNVVVG-------PQTYYRLPELLERARFGKRVVDTDYSVEDKFE 161 V EGE+ + P++ + G P +R PE +V ++ S Sbjct: 90 VVMGEGED--KVGPVMELAAGNCKPEDVPGAAFRSPE---------GIVVSESSPCPMER 138 Query: 162 RLSIVDGGYNRK--RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLI 218 L +V G +R+ RG + ++ GC CTFC VP G + SR L ++ E R+L Sbjct: 139 PLPLVPGDISREDIRGASVYIETHRGCPGNCTFCQVPEFFGRNVRSRPLKDIIMEVRELK 198 Query: 219 DNGVCEITLLGQNVNAW---RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR-DMS 274 +G + G + + +G+D E F DLL +SE+ G L T R DM Sbjct: 199 SSGARRFAISGGTGTLYGSSKFRGIDEE--AFRDLLRCISEVTGSRNL--TVPDIRVDMV 254 Query: 275 DCLIKAHGDLDVLMPYLH----LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 I LD + Y + ++SGS R+L+ M + T + + ++ R ++ Sbjct: 255 SPEI-----LDAISEYTNGWVFYGIESGSRRMLRKMKKGITPDQVVEAVELAREY--NLK 307 Query: 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 ++ FIVG+PGE DDD++ T++L D++ F P PG+ + E+V E + E Sbjct: 308 VAGSFIVGYPGEDDDDYQETLELADELMLDDYFVSIAEP---LPGTELGEEVMELPEDEN 364 Query: 391 LLCLQKKLR 399 + ++ R Sbjct: 365 PVFMKSSNR 373 >gi|254696400|ref|ZP_05158228.1| RNA modification protein [Brucella abortus bv. 2 str. 86/8/59] Length = 78 Score = 82.8 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 35/56 (62%), Positives = 46/56 (82%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKV 80 ++ FVK+YGCQMNVYDS RM D ++GY ++ DDADL++LNTCHIREKA+EK+ Sbjct: 23 RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKL 78 >gi|241068525|ref|XP_002408459.1| conserved hypothetical protein [Ixodes scapularis] gi|215492447|gb|EEC02088.1| conserved hypothetical protein [Ixodes scapularis] Length = 203 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 106/225 (47%), Gaps = 35/225 (15%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 V ++GC++N+Y+S + G + V + NTC + KAAEK + R Sbjct: 9 VVTFGCRLNIYESEIIRKNLELSGIDNV--------AIFNTCAVT-KAAEK------QAR 53 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ-----TYYRLPELLERA 143 K DL ++V GC AQ ++ P V+ V+G + YY++ + Sbjct: 54 QAICKAKKNNPDLKIIVTGCSAQTS-PQMYGNMPEVDKVIGNEEKLLPNYYQITD----- 107 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 K V+ SV++ L G +R AF+ +Q GCD FCTFC++PY RG Sbjct: 108 --EKITVNDIMSVKETASHLVSSFDGKSR-----AFIQVQNGCDHFCTFCIIPYGRGKSR 160 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248 S ++ + ++ + L+ NG E+ G +V A+ G L G TF+ Sbjct: 161 SVAIGAIAEQVKHLVLNGFKEVVFTGVDVTAY-GSDLPGSP-TFA 203 >gi|116753871|ref|YP_842989.1| radical SAM domain-containing protein [Methanosaeta thermophila PT] gi|116665322|gb|ABK14349.1| Radical SAM domain protein [Methanosaeta thermophila PT] Length = 430 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 78/272 (28%), Positives = 118/272 (43%), Gaps = 45/272 (16%) Query: 109 VAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDG 168 VA EGEEI+R P+ V+ P+L E++ Sbjct: 113 VAYREGEEIIRSEPLRMEVIDHTMPLFPPDLSEQS------------------------- 147 Query: 169 GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITL 227 RG ++ GC CTFC VP G I SRSL +V+E R+L GV + + Sbjct: 148 ----VRGANVYIETHRGCLGGCTFCQVPRFFGRNIRSRSLENIVEEVRELRRMGVKRVAV 203 Query: 228 LGQNVNAWRGK-GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286 G + + + LD K F +L LS I G L + D +++A + + Sbjct: 204 SGGTASLFGYRNALD--KDAFIRMLQELSGILGRKNLSVPDMRVDLVDDEILEAIREYTI 261 Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR----PDIAISSDFIVGFPGE 342 +L ++SGSDR+LK M + T ++D IR+V + + FIVG+PGE Sbjct: 262 --GWLFFGIESGSDRMLKLMRKGVT------VLDNIRAVELARSHGVKVGGSFIVGYPGE 313 Query: 343 TDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 + +DF T+D +++ F P GTP Sbjct: 314 SREDFEQTLDFMEEAMLDDVFVSIAEPIPGTP 345 >gi|330878024|gb|EGH12173.1| ribosomal protein S12 methylthiotransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 197 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 107/198 (54%), Gaps = 25/198 (12%) Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGET 343 ++PYL +P Q S +ILK M R A+E + + RI++ R PD+ I S FIVGFPGET Sbjct: 9 ILPYLDIPFQHASPKILKLMKR--PAFEDKTLA-RIKNWREQCPDLIIRSTFIVGFPGET 65 Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ--VDENVKA---ERLLCLQKKL 398 ++DF+ +D + + + F+YSP G P +N+L+ V ++VK +R + Q+ + Sbjct: 66 EEDFQYLLDWLTEAQLDRVGCFQYSPVEGAP-ANLLDAAIVPDDVKQDRWDRFMAHQQAI 124 Query: 399 REQQVSFNDACVGQIIEVLIEKHGKEKGKLVGR----SPWLQSVVL----NSKNHNIGDI 450 ++ +G+ IEVLI++ ++G VGR +P + V +GD Sbjct: 125 SAARLQMK---IGKEIEVLIDEV-DDRGA-VGRCFFDAPEIDGNVFIGLEEGSTVQLGDK 179 Query: 451 IKVRITDVKISTLYGELV 468 I R+TD L+ E++ Sbjct: 180 IMCRVTDADEYDLWAEML 197 >gi|195098944|ref|XP_001997957.1| GH23519 [Drosophila grimshawi] gi|193891550|gb|EDV90416.1| GH23519 [Drosophila grimshawi] Length = 214 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R + ++ ++D +RS P + I++D I GFP ET+ DF TM L +K + F Sbjct: 1 MKREYCRKDFEHVVDFLRSRVPGLTIATDIICGFPTETEQDFEETMTLCEKYQFPSLFIN 60 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDAC--VGQIIEVLIEKHGK 423 ++ PR GTP + M E++ N+ +R K+L + S+ GQ+ VL+ + Sbjct: 61 QFFPRPGTPAAKM-ERIPANLVKKR----TKRLTDLFYSYEPYAGREGQLYTVLVTEISH 115 Query: 424 EKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +K VG + + V+L + + +G ++VRIT ++ GE++ Sbjct: 116 DKLHYVGHNKSYEQVLLPMRKNLLGTRVRVRITSSSKFSMMGEIL 160 >gi|331011330|gb|EGH91386.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 89 Score = 81.3 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 41/91 (45%), Positives = 60/91 (65%), Gaps = 5/91 (5%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +++++GCQMN YDS RM D+ Q E +DAD+I+LNTC IRE+A ++VYS Sbjct: 3 KKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQ 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG 114 LGR R LK + ++++ V GCVA EG Sbjct: 63 LGRWRELKLA----NPEMVIAVGGCVASQEG 89 >gi|289806634|ref|ZP_06537263.1| radical SAM superfamily protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 134 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/104 (39%), Positives = 61/104 (58%) Query: 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 ++PYL +P+Q S RILK M R + I + R + P++ + S FIVGFPGET++D Sbjct: 18 ILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEED 77 Query: 347 FRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 F+ +D + + + FKYSP G + + +QV E VK ER Sbjct: 78 FQMLLDFLKEARLDRVGCFKYSPVEGAGANELPDQVPEEVKEER 121 >gi|260891279|ref|ZP_05902542.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia hofstadii F0254] gi|260858955|gb|EEX73455.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Leptotrichia hofstadii F0254] Length = 122 Score = 80.5 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 2/120 (1%) Query: 351 MDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACV 410 MD+V+++G+ AF F YS R GTP + M EQVDE +K ERL L + + + + Sbjct: 1 MDVVNEVGFENAFMFMYSKRTGTPAATMGEQVDEQIKNERLQQLMRLQNMKAKEESQKYL 60 Query: 411 GQIIEVLIEKHGKEKGK-LVGRSPWLQSVVLNSKNHNI-GDIIKVRITDVKISTLYGELV 468 G+I++VL+E ++ + L GRS + V+ S ++ G + RI D K TLYGELV Sbjct: 61 GKIVKVLVEGPSRKNPEMLTGRSSTHKIVLFKSDRKDLKGKFVNTRIYDAKTWTLYGELV 120 >gi|76154241|gb|AAX25732.2| SJCHGC04814 protein [Schistosoma japonicum] Length = 350 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 34/215 (15%) Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 LV + SHPR S +LH+PVQSGSD +L +M R +T E+ ++ Sbjct: 52 LVEIAEVLSHPRVYS---------------FLHIPVQSGSDAVLDAMKREYTVEEFSTVV 96 Query: 320 DRI-RSVRPD----------------IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 D + ++V+P + I++D I GFP ET+ +F T +L+ K + Sbjct: 97 DYLMKNVKPPSLPPYALDDAPNGSGALTIATDVICGFPTETNKNFEETFELIKKYRFPVL 156 Query: 363 FSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG 422 ++ R GTP +NM + + + R L R + D +G + VLI + Sbjct: 157 HINQFFARPGTPAANMSRKANSSEVKHRTRRLHDLFRSYRTY--DGRIGCEVRVLITEPS 214 Query: 423 KEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457 + VG + + ++L G I+ VRIT+ Sbjct: 215 FDGKFWVGHTKAYEQILLPKLPDVYGCIVLVRITE 249 >gi|37498997|gb|AAQ91588.1| hypothetical protein [Helicobacter mustelae] Length = 175 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 19/176 (10%) Query: 62 ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS 121 AD+I++NTC + A E+ +G I + R KEG L+V GC+ Q +E+ + Sbjct: 5 ADVIIINTCGFIQSAKEES---IGMILKMAQER-KEGA--LIVANGCLTQRYQKELREQI 58 Query: 122 PIVNVVVGPQTYYRLPELLERARFGKRVVDTD--YSVEDKFERLSIVDGGYNRKRGVTAF 179 P + ++ G Y R+ E++E+ +R + +D + ++K ER I+ G + A+ Sbjct: 59 PEIGIITGVGDYDRIDEMIEQ----RRGISSDRVFLADEKKER--IITGSR-----IHAY 107 Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 + I EGC++ C+FC +P +G SRS+ V+ E + L G + T + Q+ +++ Sbjct: 108 IKISEGCNQACSFCSIPSFKGKLKSRSIESVLKEIQNLSQRGYQDFTFIAQDSSSY 163 >gi|212274679|ref|NP_001130719.1| hypothetical protein LOC100191823 [Zea mays] gi|194689936|gb|ACF79052.1| unknown [Zea mays] Length = 308 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 13/168 (7%) Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 MNR +T E+R+++D + + P + I++D I GFPGETD+DF T++LV + + Q Sbjct: 1 MNREYTVGEFRKVVDTLCELVPGMQIATDIICGFPGETDEDFSETVNLVKEYQFPQVHIS 60 Query: 366 KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND-----ACVGQIIEVLIEK 420 ++ PR GTP + M + VK K+ RE F G++ ++ I + Sbjct: 61 QFYPRPGTPAARMKKVPSNEVK--------KRSRELTSVFESFSPYQGMEGKVEKIWITE 112 Query: 421 HGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 + LVG + V++ + + +G +IT V +++G +V Sbjct: 113 IASDGVHLVGHTKGYIQVLVTAPDSMLGTSADAKITSVGRWSVFGVVV 160 >gi|88603413|ref|YP_503591.1| radical SAM family protein [Methanospirillum hungatei JF-1] gi|88188875|gb|ABD41872.1| Radical SAM [Methanospirillum hungatei JF-1] Length = 444 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 23/211 (10%) Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNV 232 RG ++ GC C FC VP G I SR L +++ E + GV + L+G Sbjct: 163 RGAQTYIETHRGCFGRCGFCQVPRVFGRRIRSRELDEILKEVKAFQKKGVRRLALIGGTG 222 Query: 233 NAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL-------IKAHGDLD 285 + +R K + F LL +S I G S P +DCL ++AH Sbjct: 223 SLYRSKEGEVNSDAFISLLEGISSIMG----PKNVSCPDIRADCLTDEVLEAVRAH---- 274 Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR--SVRPDIAISSDFIVGFPGET 343 + ++ ++SGS+++L M + + R I++ R V+P + FI G+PGE Sbjct: 275 -TIGWIFFGIESGSEKMLGLMQKGIPIDKVRDAIEQCRQYGVKP----AGSFITGYPGEE 329 Query: 344 DDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 ++DF+AT DL++++ F P TP Sbjct: 330 EEDFQATKDLMEELTLDDVFISIAEPIPSTP 360 >gi|221124406|ref|XP_002163891.1| PREDICTED: similar to Y92H12BL.1 [Hydra magnipapillata] Length = 353 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 22/197 (11%) Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--- 234 A+L I EGC+ CTFC++P RG +SR + V+ EAR L + GV E+ ++ Q+ +A Sbjct: 92 AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLSEARALFEGGVKELLVISQDTSAYGV 151 Query: 235 --------WRGKGLDGEKCTFSDLLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLD 285 W GK + L L+E G VRL Y +P + A G Sbjct: 152 DVKYRTGFWDGKPVKTRMLELVQALGELAEPYGAWVRLHYVYPYPSVDEIVPLMATGR-- 209 Query: 286 VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDD 345 ++PYL +P+Q +L+ M R + + ++R++ A ++D P E + Sbjct: 210 -VLPYLDVPLQHSHPDVLRRMKRPASG---EKNLERLQXX---XATANDLPGMLPVEVRE 262 Query: 346 DFRAT-MDLVDKIGYAQ 361 + RA M + +++ A+ Sbjct: 263 ERRARFMQVAEEVSAAR 279 >gi|218660819|ref|ZP_03516749.1| MiaB-like tRNA modifying enzyme [Rhizobium etli IE4771] Length = 164 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 7/126 (5%) Query: 300 DRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 D ILK M RRH+ + I+ +R VRP++ +D I GFP ET++ F + L ++ G Sbjct: 1 DMILKRMKRRHSRAGALRFIEDVRRVRPEMTFGADMIAGFPTETEEMFGNAVRLAEEAGI 60 Query: 360 AQAFSFKYSPRLGTPGSNMLEQVDENV---KAERLLCLQKKLREQQVSFNDACVGQIIEV 416 A F YSPR GTP + M Q+D + +A RL KL + + D VG + Sbjct: 61 AHLHVFPYSPRPGTPAARM-PQLDRALVKDRAARLRATGHKLYQSHL---DGMVGTRQWL 116 Query: 417 LIEKHG 422 L+E +G Sbjct: 117 LVENNG 122 >gi|195388800|ref|XP_002053066.1| GJ23539 [Drosophila virilis] gi|194151152|gb|EDW66586.1| GJ23539 [Drosophila virilis] Length = 189 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 14/174 (8%) Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M R +T Y +++ IR + PD+ +SSDFI GF GETD +F T+ L++ + Y AF F Sbjct: 1 MRRGYTREAYLELVSHIRQMLPDVGLSSDFICGFCGETDSEFEDTISLIESVRYNVAFLF 60 Query: 366 KYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGK 423 YS R T ++ V VK RL + + RE + GQ +LIE K + Sbjct: 61 AYSMREKTTAHRRYVDDVPALVKTARLQRMVQAFREGATQLHKRFEGQEQLILIEGKSKR 120 Query: 424 EKGKLVGRSPWLQSVV------------LNSKNHNIGDIIKVRITDVKISTLYG 465 + GR+ V+ +++K+ N+GD + RI D L G Sbjct: 121 SENFWFGRNDANIKVIVPAASLPTAEANVSAKDINVGDFVVARIVDSNSQVLKG 174 >gi|257459328|ref|ZP_05624441.1| 2-methylthioadenine synthetase [Campylobacter gracilis RM3268] gi|257443257|gb|EEV18387.1| 2-methylthioadenine synthetase [Campylobacter gracilis RM3268] Length = 511 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 15/205 (7%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 S GC N+ DS M Q YE + AD++++NTC A ++ + L Sbjct: 8 SLGCNKNLVDSEIMLGRL--QNYELTDEPASADVMIVNTCGFIASAKQESIRAI-----L 60 Query: 91 KNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV 150 K S K+ G LLVV GC+ Q +E++R P V++ G Y ++ E++ + + Sbjct: 61 KLSEQKKSGALLVVT-GCLMQRYKDELMRELPEVDIFSGVGDYDKIDEMILKKQ------ 113 Query: 151 DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQV 210 +S + + ++ A++ I EGC++ C+FC +P +G SRS+ + Sbjct: 114 -NLFSPQTYLQSPALTSSRVITGSNYHAYVKISEGCNQKCSFCAIPSFKGRLKSRSIDDI 172 Query: 211 VDEARKLIDNGVCEITLLGQNVNAW 235 E R L+ G + + + Q+ +++ Sbjct: 173 EAEVRGLVARGFYDFSFIAQDSSSY 197 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/217 (23%), Positives = 97/217 (44%), Gaps = 11/217 (5%) Query: 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 L+ + +IKG+ R +P + LI+ V Y +P+Q +D++L M R Sbjct: 283 LIKRIEKIKGVKVARVLYLYPTSTDERLIRTIVSSPVFANYFDMPIQHINDKMLSLMKRG 342 Query: 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 A ++++ +R P+ + + IVG PGE + +F + + + + +F YS Sbjct: 343 AGAARIKELLSLMREA-PNSFLRTGVIVGHPGEGEAEFDELCAFLREFKFDRISAFAYSK 401 Query: 370 RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV 429 T S + Q+ + RL ++K RE + A VG+ + ++IE E Sbjct: 402 EEDT-ASFAMPQILARTISRRLNKIEKITREAIDNSMRALVGKKMPLIIEGASSEGEFFY 460 Query: 430 GRSP--WLQ----SVVLNS---KNHNIGDIIKVRITD 457 G P W + +++N +N +G + + IT+ Sbjct: 461 GAKPLAWDKDIDGEILINESYVQNLKVGGLYECEITE 497 >gi|88602458|ref|YP_502636.1| radical SAM family protein [Methanospirillum hungatei JF-1] gi|88187920|gb|ABD40917.1| Radical SAM [Methanospirillum hungatei JF-1] Length = 372 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 88/317 (27%), Positives = 135/317 (42%), Gaps = 35/317 (11%) Query: 98 GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV---VDTDY 154 D + V+ G A A +E++ I + VV + Y +P LL+ G V V T Sbjct: 58 AADTITVIGGPHACARWDELVH---IADYVVVGEGEYTVPRLLQSIESGTPVPPGVATAS 114 Query: 155 SVEDKFERLSIVDG--GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVV 211 S + + +DG ++ +G ++ I GC CT+C P G I RS+ +V Sbjct: 115 SFQ-PVDHTVFLDGNPSFSEYKG---YIEISRGCPYGCTYCQTPRIFGNTIRHRSIGSIV 170 Query: 212 DEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPR 271 A D I L N A+ GL + LL+ L++I + + + P Sbjct: 171 RLAHSFHD-----IRFLSPNALAYGTDGLHPDPRHIRSLLHELAKIPD--KDIFLGTFPG 223 Query: 272 DMSDCLIKAHGDLDVLMPY-----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 ++ + +D++ Y +H+ QSG++ LK + R HT + + ID Sbjct: 224 EIRPEFVSEEA-VDLIARYCSNTRIHIGAQSGAESTLKRIRRGHTLSDVWRAIDHTTDA- 281 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDL---VDKIGYAQAFSFKYSPRLGTP--GSNMLEQ 381 D IVGFP ETD++ AT+ V KIGY A F P GTP G + Sbjct: 282 -GFTPVVDIIVGFPDETDEELLATVSFCREVSKIGYVHAHRFFSLP--GTPLEGRVSRDL 338 Query: 382 VDENVKAERLLCLQKKL 398 + E V A L L +L Sbjct: 339 IPEVVSALGSLALSGRL 355 >gi|261339141|ref|ZP_05966999.1| hypothetical protein ENTCAN_05362 [Enterobacter cancerogenus ATCC 35316] gi|288318984|gb|EFC57922.1| RNA modification enzyme, MiaB-family [Enterobacter cancerogenus ATCC 35316] Length = 167 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 10/157 (6%) Query: 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 I + R + PD+ + S FIVGFPGET++DF+ +D + + + FKYSP G + + Sbjct: 14 IKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVDGATANEL 73 Query: 379 LEQVDENVKAE---RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK--GKLVGRSP 433 +QV E VK E R + LQ+++ +++ VG+ + V+I++ +E G+ + +P Sbjct: 74 ADQVPEEVKEERWNRFMQLQQQISAERLQEK---VGREVLVIIDEVDEEGAIGRSMADAP 130 Query: 434 WLQSVVLNSKNHNI--GDIIKVRITDVKISTLYGELV 468 + V + N+ GDII+V++ + L+G V Sbjct: 131 EIDGAVYLNGETNVKPGDIIRVKVENADEYDLWGSRV 167 >gi|293397288|ref|ZP_06641560.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Serratia odorifera DSM 4582] gi|291420206|gb|EFE93463.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Serratia odorifera DSM 4582] Length = 75 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 33/68 (48%), Positives = 51/68 (75%), Gaps = 1/68 (1%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ +K++GCQMN YDS +M D+ S GY+ ++ ++AD+++LNTC IREKA EKV++ Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLGSTHGYQWTDNAEEADVLLLNTCSIREKAQEKVFAM 62 Query: 84 LGRIRNLK 91 LGR + LK Sbjct: 63 LGRWKLLK 70 >gi|330901912|gb|EGH33273.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 128 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 2/125 (1%) Query: 346 DFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405 DF TM L++ +G+ +FSF YSPR GTP +++ + E +K ERL LQ +L +Q Sbjct: 3 DFDNTMKLIEDVGFDFSFSFVYSPRPGTPAADLKDDTPEALKKERLAALQHRLNQQGFEI 62 Query: 406 NDACVGQIIEVLIEKHG-KEKGKLVGRSPWLQSVVLNSKNHN-IGDIIKVRITDVKISTL 463 + VG I +L+ + K+ G+L GR+ + V N IG V I D + +L Sbjct: 63 SRQMVGSIQRILVTDYSKKDPGELQGRTENNRIVNFRCDNPKLIGQFADVHIDDAQPHSL 122 Query: 464 YGELV 468 G L+ Sbjct: 123 RGSLL 127 >gi|302806569|ref|XP_002985034.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii] gi|300147244|gb|EFJ13909.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii] Length = 613 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 53/81 (65%) Query: 290 YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349 +LH+ VQSG D +L+ M R +T E+R+I+D + + P+I I++D I GFPGET +DF Sbjct: 186 FLHVLVQSGRDSVLEGMKREYTFSEFRKIVDTLTRLVPEIHIATDVICGFPGETSEDFDR 245 Query: 350 TMDLVDKIGYAQAFSFKYSPR 370 M+L+ + + Q ++ PR Sbjct: 246 IMELIREYTFPQVHISQFYPR 266 >gi|47220777|emb|CAF99984.1| unnamed protein product [Tetraodon nigroviridis] Length = 401 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 33/155 (21%) Query: 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 G+ Y H +M+ L + +LH+PVQS SD +L M R + +++ + Sbjct: 5 GMTNPPYILEHLEEMAKILTHPR-----VYAFLHVPVQSASDSVLMDMKREYCVSDFKTV 59 Query: 319 IDRIR---------------------------SVRPDIAISSDFIVGFPGETDDDFRATM 351 +D ++ + P + I++D I GFPGETD DF+ T+ Sbjct: 60 VDFLKERPLWQHGEFTRENGTQEPGAGFPVFHARVPGVTIATDVICGFPGETDKDFQETL 119 Query: 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 DLV + F ++ PR GTP + M EQV ++ Sbjct: 120 DLVKLYRFPSLFINQFYPRPGTPAAKM-EQVPAHI 153 >gi|126178881|ref|YP_001046846.1| radical SAM domain-containing protein [Methanoculleus marisnigri JR1] gi|125861675|gb|ABN56864.1| Radical SAM domain protein [Methanoculleus marisnigri JR1] Length = 369 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 89/302 (29%), Positives = 129/302 (42%), Gaps = 31/302 (10%) Query: 89 NLKNSRIKE----GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL---E 141 N N RI G D + +V G A A E+ + V VVG + Y LP LL E Sbjct: 45 NSINERIYRDEIVGADCITIVGGPHASACYREVAEYADYV--VVG-EGEYTLPALLSAIE 101 Query: 142 RARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 R V T R +++ GY + F+ I GC C +C P G Sbjct: 102 EGRDPPPGVATAAGYTPA--RHTVLLDGYPPFSRIKGFVEITRGCPFSCGYCQTPRLFGR 159 Query: 202 EI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGL 260 + RS+ ++V A + D I + N A+ G DG + L +KG Sbjct: 160 CMRHRSIDEIVRYASRYRD-----IRFVTPNAFAY---GSDGVHLRLDKVERLLRSLKGR 211 Query: 261 VRLRYTTSHPRDM-SDCLIKAHGDL---DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 V Y + P ++ +C+ + +L LH QSGSDR+L+ ++R HT + Sbjct: 212 V---YFGTFPGEVRPECISQQSVELVLDTCANTRLHFGAQSGSDRVLRHLHRGHTVEDVV 268 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY-AQAFSFKYSPRLGTPG 375 + D R + DFI+G P E+DDD RAT+DLV + +A + P GTP Sbjct: 269 RAFDLCREH--GLVPVVDFILGLPFESDDDQRATLDLVKMVTRGGKAHIHYFMPLPGTPL 326 Query: 376 SN 377 N Sbjct: 327 QN 328 >gi|213584410|ref|ZP_03366236.1| hypothetical protein SentesTyph_25585 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 121 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAY 313 LS++ RL Y +P + A G + +PYL +P+Q S RILK M R + Sbjct: 4 LSKLGVWTRLHYVYPYPHVDDVIPLMAEGKI---LPYLDIPLQHASPRILKLMKRPGSVD 60 Query: 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 I + R + P++ + S FIVGFPGET++DF+ +D + + + FKYSP G Sbjct: 61 RQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEG 119 >gi|307354286|ref|YP_003895337.1| Radical SAM domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157519|gb|ADN36899.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571] Length = 437 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 117/256 (45%), Gaps = 24/256 (9%) Query: 108 CVAQAEGEEILRR---SPIVNVVVGPQTYYRLPELL-----ERARFGKRVVDTDYSVEDK 159 CV EGEE +++ + N G Y E++ ER KR + Sbjct: 93 CVCVGEGEETVKKLAGDGVSNDFPGLAFYDDGSEIVFTGKAERVDVNKRPLP-------- 144 Query: 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLI 218 L D G RG +A++ GC CTFC VP G +I SRS+ ++ E R+ Sbjct: 145 ---LIPPDIGSQDIRGASAYIETHRGCTGGCTFCQVPRYFGRDIQSRSVEDILKEVREFK 201 Query: 219 DNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLI 278 G +++ G + ++ K + + F +L+ ++EI G + +SD ++ Sbjct: 202 KRGAKRLSVSGGTGSLFQYKNGEINEEKFIELMKGMAEIMGPKNISSPDIRVDCISDNIL 261 Query: 279 KAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG 338 +A + + ++ ++SGSDR+LK M + TA + + + + + FIVG Sbjct: 262 EAIRNYTI--GWIFFGLESGSDRVLKKMGKGATANQAAEAVAACH--EHGLKAAGSFIVG 317 Query: 339 FPGETDDDFRATMDLV 354 +PGET++D+ T D + Sbjct: 318 YPGETEEDYEMTKDFI 333 >gi|304315299|ref|YP_003850446.1| hypothetical protein MTBMA_c15540 [Methanothermobacter marburgensis str. Marburg] gi|302588758|gb|ADL59133.1| conserved hypothetical protein [Methanothermobacter marburgensis str. Marburg] Length = 430 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 39/226 (17%) Query: 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNV 232 RG + ++ GC CTFC VP G E+ SR L ++ E R+L +G + G Sbjct: 153 RGASVYIETHRGCPGNCTFCQVPEFFGREVRSRPLEDIIREVRELRKSGARRFAISGGTG 212 Query: 233 NAW---RGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMP 289 + R +G+D + F++LL +SEI G PR+++ I+ +D++ P Sbjct: 213 TLYGSSRFRGID--EDAFTELLREISEITG----------PRNLTVPDIR----VDMVTP 256 Query: 290 ------------YLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFI 336 ++ ++SGS RIL+ M + + +I+ + R ++ ++ FI Sbjct: 257 EILDAISEYTNGWVFYGIESGSRRILRRMKK---GIKPGDVIEAVELAREHNLKVAGSFI 313 Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 VG+PGE + D T++L D++ F P PG+ + ++V Sbjct: 314 VGYPGEDERDHEETLELADELMLDDYFVSIAEP---IPGTELGDEV 356 >gi|157781905|gb|ABV72278.1| MiaB [Azospirillum brasilense] Length = 133 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 5/136 (3%) Query: 168 GGY-NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEIT 226 GG+ +R R AF+ +Q+GCD CTFC++PY RG S + VV++ + L+ G E+ Sbjct: 2 GGFEDRAR---AFVQVQQGCDHRCTFCIIPYGRGPSRSVPIGAVVEQVQALVKAGYNEVV 58 Query: 227 LLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV 286 L G ++ ++ G L G + L+ + L RLR ++ ++ D L + Sbjct: 59 LSGVDITSF-GPDLPGTPTLGQMVRRLLALVPELPRLRLSSLDCIEIDDDLWRLIETEPR 117 Query: 287 LMPYLHLPVQSGSDRI 302 LMP+LHL +Q+G D I Sbjct: 118 LMPHLHLSLQAGDDMI 133 >gi|213420671|ref|ZP_03353737.1| hypothetical protein Salmonentericaenterica_24192 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 166 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 24/179 (13%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 P+ FV S GC N+ DS R+ ++GY+ V DDAD++++NTC + A ++ Sbjct: 8 PKIGFV-SLGCPKNLVDSERILTELRTEGYDVVPHYDDADMVIVNTCGFIDSAVQESLEA 66 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 +G N E G V+V GC+ E ++I P V + GP +Y ++ + + Sbjct: 67 IGEALN-------ENGK--VIVTGCLGAKE-DQIREVHPKVLEITGPHSYEQVLQHVHH- 115 Query: 144 RFGKRVVDTDYSVEDKFER-LSIV-DGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG 200 Y + K LS+V + G A+L I EGC+ CTFC++P RG Sbjct: 116 ----------YVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRG 164 >gi|167947810|ref|ZP_02534884.1| hypothetical protein Epers_15212 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 155 Score = 73.6 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 32/85 (37%), Positives = 53/85 (62%) Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 M RR + E+R++++ R PD+ I+SD IVGFPGET+ D++ ++ V+++G+ F Sbjct: 1 MARRCKSDEFRRLVEEGRQQVPDLNITSDIIVGFPGETEADWQQSLSFVEQMGFGHLHIF 60 Query: 366 KYSPRLGTPGSNMLEQVDENVKAER 390 YSPR GT + + V +K +R Sbjct: 61 AYSPRSGTKAAGLPNPVPREIKRQR 85 >gi|284098392|ref|ZP_06385871.1| tRNA 2-methylthioadenosine synthase [Candidatus Poribacteria sp. WGA-A3] gi|283830565|gb|EFC34728.1| tRNA 2-methylthioadenosine synthase [Candidatus Poribacteria sp. WGA-A3] Length = 125 Score = 73.2 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 36/87 (41%), Positives = 58/87 (66%), Gaps = 4/87 (4%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 +R ++++YGCQMNV DS M + G++ V +DDAD++++NTC IRE A KV + Sbjct: 36 RRVYIETYGCQMNVSDSELMAGILTQSGHQTVTHIDDADVVLVNTCAIRENAETKV---I 92 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQ 111 R+++L N R + +L++ V GC+AQ Sbjct: 93 NRLQHL-NHRKRRQPELIIGVCGCMAQ 118 >gi|315927398|gb|EFV06736.1| miaB-like tRNA modifying enzyme YliG, TIGR01125 [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 263 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 90/180 (50%), Gaps = 4/180 (2%) Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDC 276 ++ G + + + Q+ +++ GEK L+ + +IKG+ R +P S+ Sbjct: 1 MVARGYKDFSFIAQDTSSYLFD--KGEKDGLIRLIDEVEKIKGIRAARILYLYPTSASEA 58 Query: 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336 LIK ++ + Y +P+Q SD +LK M R + +++++ ++S P+ + + FI Sbjct: 59 LIKRIIASEIFINYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA-PNSFLRTGFI 117 Query: 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQK 396 VG PGE++ DF + V G+ + F YS T +M EQV V +RL ++K Sbjct: 118 VGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFDM-EQVPFKVINKRLKIIEK 176 >gi|301169364|emb|CBW28964.1| unnamed protein product [Haemophilus influenzae 10810] Length = 143 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 83/143 (58%), Gaps = 14/143 (9%) Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 S FIVGFPGET++DF+ +D + + + FK+SP G P ++M +QV E+VK ER Sbjct: 3 STFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAPATDMADQVPEDVKEERFH 62 Query: 393 CLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRS----PWLQSVV----LNS 442 + +Q++S N +G+ ++VL+++ ++ ++GRS P + +V L+ Sbjct: 63 RFMQ--LQQEISANRLKQKIGKTLDVLVDEI--DEDGIIGRSKADAPEVDGLVYVDNLSG 118 Query: 443 KNHNIGDIIKVRITDVKISTLYG 465 N +G++IKV IT+ L+G Sbjct: 119 INVKVGNVIKVTITNSDEYDLWG 141 >gi|71901263|ref|ZP_00683362.1| Protein of unknown function UPF0004 [Xylella fastidiosa Ann-1] gi|71728954|gb|EAO31086.1| Protein of unknown function UPF0004 [Xylella fastidiosa Ann-1] Length = 113 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F+K++GCQMN YDS +M D+ + + E ++ ++AD+I++NTC IREKA EKV+S L Sbjct: 49 KLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINTCSIREKAQEKVFSQL 108 Query: 85 GRIR 88 GR R Sbjct: 109 GRWR 112 >gi|149924340|ref|ZP_01912708.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Plesiocystis pacifica SIR-1] gi|149814778|gb|EDM74349.1| MiaB-like tRNA modifying enzyme YliG, TIGR01125 [Plesiocystis pacifica SIR-1] Length = 251 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 19/220 (8%) Query: 1 MGLFIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMD 60 M + + ++G S+ V P++ + S GC N D+ M + + G++ V+ Sbjct: 1 MTVNLPVVGNGPQPSEPVSG---PKKVYFVSLGCPKNQVDTEVMLGVVQANGHQLVDDPS 57 Query: 61 DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV-----VAGCVAQAEGE 115 +AD +V+NTC + A ++ + I L + + GD VV VAGC++Q Sbjct: 58 EADTLVVNTCGFIDAAKQE---SIDTILELAAVKAEAAGDASVVDKRLVVAGCLSQRYPT 114 Query: 116 EILRRSPIVNVVVGPQTYYRLPELLERA--RFGKRVVDTDYSVEDKFERLSIVDGGYNRK 173 E+ P V+ +G + ++L A R G ++ + D +V G++ Sbjct: 115 ELAAEMPEVDHFLGSADMLGMAKVLGGAAGRMGVSELNRRAWLYDHSTPRQVVGVGHSN- 173 Query: 17