RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus Liberibacter asiaticus str. psy62] (469 letters) >gnl|CDD|30966 COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]. Length = 437 Score = 502 bits (1294), Expect = e-143 Identities = 207/448 (46%), Positives = 300/448 (66%), Gaps = 18/448 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYER-VNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + ++++ GCQMN+YDS RM + + GYE V ++AD++++NTC +REKA +KV S + Sbjct: 4 KVYIETLGCQMNLYDSERMAGLLEAAGYEELVEDPEEADVVIINTCAVREKAEQKVRSAI 63 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G ++ K D ++V GC+AQAE EEIL R+P V++V+GPQ RLPE +E+A Sbjct: 64 GELK-------KLKPDAKIIVTGCLAQAE-EEILERAPEVDIVLGPQNKERLPEAIEKAL 115 Query: 145 FGK--RVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 GK VV + E+KF++L R+ GV AF+ IQEGC+KFCTFC++PY RG E Sbjct: 116 RGKKEFVVVLSFPEEEKFDKLPPR-----REGGVRAFVKIQEGCNKFCTFCIIPYARGKE 170 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 SR ++ E ++L+ GV EI L GQ+VNA+ GK L G K +DLL LS+I G+ R Sbjct: 171 RSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAY-GKDLGGGKPNLADLLRELSKIPGIER 229 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+ +SHP + +D LI+A + + P+LHLPVQSGSDRILK M R +T EY +II+++ Sbjct: 230 IRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKL 289 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPDIAIS+D IVGFPGET++DF T+DLV+++ + + FKYSPR GTP + M +QV Sbjct: 290 RAARPDIAISTDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQV 349 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL-N 441 E VK ERL LQ+ ++ FN VG+ +EVL+E+ G +KG+L+GR+ + VV Sbjct: 350 PEEVKKERLRRLQELQQQISAEFNQKLVGKTLEVLVEEGGSKKGELIGRTENYRPVVFGG 409 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELVV 469 +IG+ ++V+IT+ +L GE+V Sbjct: 410 VYTEDIGEFVEVKITEADEYSLIGEVVE 437 >gnl|CDD|37703 KOG2492, KOG2492, KOG2492, CDK5 activator-binding protein [Signal transduction mechanisms]. Length = 552 Score = 295 bits (757), Expect = 1e-80 Identities = 164/479 (34%), Positives = 256/479 (53%), Gaps = 39/479 (8%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++ ++++YGCQMNV D+ + + GY R + ++AD+I+L TC IRE A +++++ L Sbjct: 73 RKVYLETYGCQMNVNDTEIVWSILKKSGYLRSDKPEEADVILLVTCSIREGAEQRIWNRL 132 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 +R LK +R L V V GC+A+ E+IL R +V++V GP Y LP LL AR Sbjct: 133 KLLRALKVNR-PTSRPLRVGVLGCMAERLKEKILEREKMVDIVAGPDAYRDLPRLLAVAR 191 Query: 145 FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEIS 204 G+ ++ S+++ + + V + TAF++I GCD CT+C+VP+TRG E S Sbjct: 192 GGQNGINVLLSLDETYADVQPVRVSSSST---TAFVSIMRGCDNMCTYCIVPFTRGRERS 248 Query: 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-------------------- 244 R + +V+E ++L + GV E+TLLGQNVN++R Sbjct: 249 RPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPGFSTVYKPKQG 308 Query: 245 -CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL 303 F+ LL +S +R+R+T+ HP+D D +++ D D + +HLP QSG R+L Sbjct: 309 GLRFAHLLDQVSRADPEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVL 368 Query: 304 KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF 363 + M R ++ Y +++ IRS+ P + +SSDFI GF GET++D + T+ L+ ++GY F Sbjct: 369 EIMRRGYSREAYLELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVF 428 Query: 364 SFKYSPRLGTPG-SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE--- 419 F YS R T + + V E VK RL L RE+ + FND VG VL+E Sbjct: 429 LFAYSMREKTRAYHRLKDDVPEEVKNRRLFELITFFREEAIKFNDGLVGCTQLVLVEGKS 488 Query: 420 ------KHGKEKGKLVGRSPWLQSVVLNS----KNHNIGDIIKVRITDVKISTLYGELV 468 G+ G L P + +N+ GD + V+ITD TL G+L+ Sbjct: 489 KRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAGPGDYVLVKITDSNSQTLKGQLL 547 >gnl|CDD|39556 KOG4355, KOG4355, KOG4355, Predicted Fe-S oxidoreductase [General function prediction only]. Length = 547 Score = 173 bits (439), Expect = 1e-43 Identities = 120/450 (26%), Positives = 202/450 (44%), Gaps = 35/450 (7%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 Q+ ++K++GC N DS M + GY + ++ADL +LN+C ++ + + Sbjct: 55 QKIYIKTWGCSHNNSDSEYMAGQLAAYGY-ALTEPEEADLWLLNSCTVKNPSEDA----- 108 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN--VVVGPQTYYRLPELLER 142 RNL +V+AGCV Q + V+G Q R+ E++E Sbjct: 109 --FRNLITRGRSGKKP--LVIAGCVPQGS-----PDLDYLEGLSVIGVQQIDRVVEVVEE 159 Query: 143 ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 G V + + RK + ++I GC CT+C + RG+ Sbjct: 160 TLKGHSVRLLTRRTLGALDLPKV------RKNPLIEIISINTGCLGACTYCKTKHARGLL 213 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 S +V+ R + GVCEI L ++ A+ G D K L + I Sbjct: 214 ASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAY---GRDIGKSLPKLLWKLVEVIPESCM 270 Query: 263 LRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 LR ++P + + L + +LH+PVQSGSD +L M R + ++++ ++D Sbjct: 271 LRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVD 330 Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 + P I I++D I GFP ETD+DF TM+LV K + F ++ PR GTP + M + Sbjct: 331 FLTERVPGITIATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAAKM-K 389 Query: 381 QVDENVKAERLLCLQKKLREQQVSFN--DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV 438 ++ +R K L E S+ +G++ VL+ + +K VG + + V Sbjct: 390 KIPAVEVKKR----TKALSELFRSYTPYTDEIGELHRVLVTEVAADKLHYVGHNKSYEQV 445 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 ++ + +G ++VRIT V ++ GE Sbjct: 446 LVPLEYCKMGTWVEVRITSVGKFSMIGEPA 475 >gnl|CDD|144496 pfam00919, UPF0004, Uncharacterized protein family UPF0004. This family is the N terminal half of the Prosite family. The C-terminal half has been shown to be related to MiaB proteins. This domain is a nearly always found in conjunction with pfam04055 and pfam01938 although its function is uncertain. Length = 98 Score = 128 bits (325), Expect = 3e-30 Identities = 41/104 (39%), Positives = 65/104 (62%), Gaps = 6/104 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++ GCQMN DS M + GYE V+ ++AD++V+NTC +REKA +K + Sbjct: 1 KVYIETLGCQMNQADSEIMAGLLKKAGYELVDDPEEADVVVVNTCAVREKAEQKSRQTIR 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVG 129 R++ LKN D +VV GC+AQ EE+L+ P V++V+G Sbjct: 61 RLKRLKNP------DAKIVVTGCMAQRYPEELLKEIPEVDLVLG 98 >gnl|CDD|146602 pfam04055, Radical_SAM, Radical SAM superfamily. Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Length = 165 Score = 88.4 bits (219), Expect = 4e-18 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 18/179 (10%) Query: 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRG 237 + I GC+ CT+C P R R LS ++++EA++L GV + L G Sbjct: 1 IIITPGCNLRCTYCAFPSIRARGKGRELSPEEILEEAKELARLGVEVVILTGGEPLLLPD 60 Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPV 295 E+ E +R+ T+ + L +K G + + + + Sbjct: 61 LVELLER-------LLKLEELEGIRITLETNGTLLDEELLEELKEAG-----LDRVSISL 108 Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 QSG D +LK +NR HT E + ++ +R I + D IVG PGE D+D T++L+ Sbjct: 109 QSGDDEVLKIINRGHTFEEVLEALELLREA--GIPVVVDNIVGLPGENDEDLEETLELL 165 >gnl|CDD|31235 COG1032, COG1032, Fe-S oxidoreductase [Energy production and conversion]. Length = 490 Score = 77.3 bits (189), Expect = 7e-15 Identities = 68/361 (18%), Positives = 127/361 (35%), Gaps = 36/361 (9%) Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 L LVVV G A E +L P +V+G LPELLE G+ Sbjct: 91 KLVAKARGRRDKPLVVVGGPEATENPEPLLDFGPADIIVIGEGEET-LPELLEALEEGED 149 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRK---------------------RGVTAFLTIQEGCD 187 FE + + + GC Sbjct: 150 DPRVPGLALPSFEEIVYDQDLDDVPIPAYDLVDDHKRDDLPPYGAGENRAFSVETSRGCP 209 Query: 188 KFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE---K 244 + C FC + R +VV+E ++LI+ G + ++ + L+ E + Sbjct: 210 RGCRFCSITKHFKY-RRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFE 268 Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK 304 +L+ V + + ++D + + + +++ ++SGS+ +LK Sbjct: 269 LLSLELIERGLRKGCRVHISAPSLRADTVTDEELLKLLR-EAGLRRVYIGIESGSEELLK 327 Query: 305 SMNRRHTAYEYRQIIDRIRSVRPD--IAISSDFIVGFPGETDDDFRAT---MDLVDKIGY 359 +N+ T ++++ + + + + FIVG PGET++D + T + K+G Sbjct: 328 KINKGIT---TEEVLEEAVKIAKEHGLRVKLYFIVGLPGETEEDVKETIELAKFIKKLGP 384 Query: 360 AQAFSF-KYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLI 418 S + P GTP M + +E +K L + R + ++ Sbjct: 385 KLYVSPSPFVPLPGTPLQEMPKLENELLKRRFEGDLLQPWRPLESLASEEMYYLGRSRRA 444 Query: 419 E 419 E Sbjct: 445 E 445 >gnl|CDD|30980 COG0635, HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]. Length = 416 Score = 51.8 bits (124), Expect = 3e-07 Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 7/135 (5%) Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P + KA + V + L VQS +D +LK++ R H E ++ ++ R Sbjct: 132 PGTVEAEKFKALKEAGV--NRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFT- 188 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV----DEN 385 +I+ D I G PG+T + + ++ ++G + + GT + + DE+ Sbjct: 189 SINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDED 248 Query: 386 VKAERLLCLQKKLRE 400 KA+ +++ L + Sbjct: 249 EKADMYELVEELLEK 263 >gnl|CDD|31435 COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]. Length = 312 Score = 45.6 bits (108), Expect = 3e-05 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 11/91 (12%) Query: 275 DCLIKAHGDLDVLMPY-------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 DCL LD+L Y + L +Q+ D+ LK +NR H Y + R+R + Sbjct: 125 DCLPDD--VLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRLR--KR 180 Query: 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 I + + I G PGET D+ T +V ++G Sbjct: 181 GIKVCTHLINGLPGETRDEMLETAKIVAELG 211 >gnl|CDD|110897 pfam01938, TRAM, TRAM domain. This small domain has no known function. However it may perform a nucleic acid binding role (Bateman A. unpublished observation). Length = 59 Score = 43.4 bits (103), Expect = 1e-04 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 408 ACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGEL 467 VGQ EVL+E G G+ +GR+ + V + G+ ++V+IT K + L GEL Sbjct: 2 KYVGQTQEVLVEGLGSN-GEGIGRTDNGKVVFV--PGALPGEFVEVKITKAKRNYLRGEL 58 Query: 468 V 468 + Sbjct: 59 L 59 >gnl|CDD|31234 COG1031, COG1031, Uncharacterized Fe-S oxidoreductase [Energy production and conversion]. Length = 560 Score = 40.7 bits (95), Expect = 0.001 Identities = 62/330 (18%), Positives = 118/330 (35%), Gaps = 65/330 (19%) Query: 176 VTAFLTIQEGCDKF----CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ- 230 V + GC + C+FC P RG R VV+E + L GV L Q Sbjct: 183 VICEIETYRGCPRRVSGGCSFCTEPV-RGRPEFRPPEDVVEEVKALYRAGVRHFRLGRQA 241 Query: 231 NVNAWRGKGLDGE---------KCTFSDLLYSLSEIKGL----VRLRYTTSHP---RDMS 274 ++ ++ GE + F + +K L +P R+++ Sbjct: 242 DIFSYGADDNGGEVPRPNPEALEKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIA 301 Query: 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA---YEYRQIIDRIRSVR----- 326 ++K +V ++S R+ + N + E +I++ + R Sbjct: 302 KVIVKYGTPGNVAA----FGLESADPRVARKNNLNASPEEVLEAVEIVNEVGGGRGYNGL 357 Query: 327 PDIAISSDFIVGFPGETDDDFRATMD----------LVDKIGYAQAFSFKYSPRLGTPGS 376 P + +F+ G PGET + + + LV +I Q F GTP Sbjct: 358 PYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFP-----GTPMW 412 Query: 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII-------EVLIEKHGKEK--GK 427 ++ E K + ++K+RE+ + + +++ +V +E + G+ Sbjct: 413 ERGKKKAEKHK-KLFAAFKRKVREE---IDLPMLKRVVPKGTVLRDVRVEVYEGGLTFGR 468 Query: 428 LVGRSPWLQSVVLNSKNHNIGDIIKVRITD 457 +G P L + +G + V + D Sbjct: 469 QLGSYPLLVGIP---GRLELGRYVDVVVVD 495 >gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin.. Length = 204 Score = 38.9 bits (90), Expect = 0.003 Identities = 35/212 (16%), Positives = 74/212 (34%), Gaps = 24/212 (11%) Query: 180 LTIQEGCDKFCTFCVVP--YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237 L + GC+ C FC P RG E + +++D + + GV + L G + Sbjct: 1 LELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLYPE 60 Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP---RDMSDCLIKAHGDLDVLMPYLHLP 294 ++LL L + + T+ ++ L + D + Sbjct: 61 ---------LAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDGVGVS------ 105 Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRI-RSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 + SG + + + +++ ++ + + +S+ +VG E ++D ++L Sbjct: 106 LDSGDEEVADKIRGS--GESFKERLEALKELREAGLGLSTTLLVGLGDEDEEDDLEELEL 163 Query: 354 VDKIGYAQAFSFK-YSPRLGTPGSNMLEQVDE 384 + + S P GTP V Sbjct: 164 LAEFRSPDRVSLFRLLPEEGTPLELAAPVVPA 195 >gnl|CDD|48079 cd01979, Pchlide_reductase_N, Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.. Length = 396 Score = 30.2 bits (68), Expect = 1.3 Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 285 DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 +V PYL Q+ +L M R + + +DRIR +RPD+ ++ Sbjct: 304 EVGTPYLDKRFQAAELELLPPMVRIVEKPDNYRQLDRIRELRPDLVVTG 352 >gnl|CDD|34807 COG5210, COG5210, GTPase-activating protein [General function prediction only]. Length = 496 Score = 28.5 bits (63), Expect = 4.0 Identities = 9/43 (20%), Positives = 21/43 (48%) Query: 12 HMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYE 54 H++ + V + R+F+ + + + +LR+ D F +G Sbjct: 367 HLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSS 409 >gnl|CDD|31162 COG0820, COG0820, Predicted Fe-S-cluster redox enzyme [General function prediction only]. Length = 349 Score = 28.3 bits (63), Expect = 4.1 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Query: 172 RKRGVTAFLTIQEGCDKFCTFCVVP---YTRGIEISRSLSQVVDEARKLIDNGVCEIT 226 K T ++ Q GC CTFC R + + QV+ A+ L ++ I+ Sbjct: 97 EKDRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRIS 154 >gnl|CDD|48153 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.. Length = 517 Score = 27.9 bits (62), Expect = 6.3 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Query: 124 VNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGG 169 +N + Q Y PE L ++ +++ D ERL++V GG Sbjct: 277 INCFINRQLIYNYPEQLFAD---AGIMAIEHADFDGVERLALVTGG 319 >gnl|CDD|143510 cd06843, PLPDE_III_PvsE_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity. Length = 377 Score = 27.6 bits (62), Expect = 7.5 Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 47/122 (38%) Query: 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCL---------IKAHGD---LDVLMPYLH 292 C + +Y L+ LR +H R + L IKA+ D L L P++ Sbjct: 3 CAY---VYDLAA------LR---AHARALRASLPPGCELFYAIKANSDPPILRALAPHVD 50 Query: 293 -LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 V SG + I +R+ PD + I G PG+TD + + Sbjct: 51 GFEVASGGE------------------IAHVRAAVPDAPL----IFGGPGKTDSELAQAL 88 Query: 352 DL 353 Sbjct: 89 AQ 90 >gnl|CDD|146384 pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 99 Score = 27.5 bits (62), Expect = 8.7 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 6/46 (13%) Query: 30 KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA----DLIVLNTCH 71 G ++ VYD E+ G V+ +++A D IV+ T H Sbjct: 27 LEEGAEVRVYDPYVPEEHED--GVTLVDDLEEALKGADAIVILTDH 70 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.140 0.409 Gapped Lambda K H 0.267 0.0745 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,699,219 Number of extensions: 313083 Number of successful extensions: 765 Number of sequences better than 10.0: 1 Number of HSP's gapped: 741 Number of HSP's successfully gapped: 28 Length of query: 469 Length of database: 6,263,737 Length adjustment: 97 Effective length of query: 372 Effective length of database: 4,167,664 Effective search space: 1550371008 Effective search space used: 1550371008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (26.5 bits)