RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus Liberibacter asiaticus str. psy62] (469 letters) >gnl|CDD|184622 PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 444 Score = 746 bits (1929), Expect = 0.0 Identities = 238/446 (53%), Positives = 320/446 (71%), Gaps = 10/446 (2%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++ ++K+YGCQMN YDS +M D+ ++GYE + ++ADLI+LNTC IREKA EKV+S Sbjct: 3 MKKLYIKTYGCQMNEYDSSKMADLLGAEGYELTDDPEEADLILLNTCSIREKAQEKVFSE 62 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR R LK DL++ V GCVAQ EGEEIL+R+P V++V GPQT +RLPE++ RA Sbjct: 63 LGRWRKLKEKN----PDLIIGVGGCVAQQEGEEILKRAPYVDIVFGPQTLHRLPEMIARA 118 Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R GK VVD + +KF+ L R G +AF++I EGCDK+CTFCVVPYTRG E Sbjct: 119 RRGGKPVVDISFPEIEKFDHLP-----EPRAEGPSAFVSIMEGCDKYCTFCVVPYTRGEE 173 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 +SR + V+ E +L + GV EITLLGQNVNA+RG+G DGE F++LL ++ I G+ R Sbjct: 174 VSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAAIDGIER 233 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +RYTTSHPRD +D LI+A+ DL L+P+LHLPVQSGSDRILK+MNR HTA EY+ II ++ Sbjct: 234 IRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKL 293 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ RPDIAISSDFIVGFPGETD+DF ATM L++ +G+ Q+FSF YSPR GTP +++ + V Sbjct: 294 RAARPDIAISSDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYSPRPGTPAADLPDDV 353 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442 E VK ERL LQ + +QQ++F+ + VG + VL+E ++ G+L+GR+ + V Sbjct: 354 PEEVKKERLQRLQALINQQQMAFSRSMVGTVQRVLVEGPSRKDGQLIGRTENNRVVNFEG 413 Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+IT+ ++L GELV Sbjct: 414 DPDLIGQFVDVKITEAYPNSLRGELV 439 >gnl|CDD|161701 TIGR00089, TIGR00089, RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related. Length = 429 Score = 481 bits (1240), Expect = e-136 Identities = 199/443 (44%), Positives = 281/443 (63%), Gaps = 17/443 (3%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + ++++YGCQMN DS M + GYE + ++AD+I++NTC +REKA +KV S LG Sbjct: 1 KVYIETYGCQMNEADSEIMAGLLKEAGYEVTDDPEEADVIIINTCAVREKAEQKVRSRLG 60 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + LK K +VVAGC+AQ EGEE+L+R P V++V+GPQ R+PE +E A Sbjct: 61 ELAKLKKKNAK------IVVAGCLAQREGEELLKRIPEVDIVLGPQNKERIPEAIESAEQ 114 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205 K+VV + G AFL IQEGCDKFCT+C+VPY RG E SR Sbjct: 115 EKQVVFNISKDVYEELPRPRSFGKT------RAFLKIQEGCDKFCTYCIVPYARGRERSR 168 Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265 +++E ++L+ GV EI LLGQNV A+ GK L GE +DLL LS+I G+ R+R+ Sbjct: 169 PPEDILEEVKELVSKGVKEIVLLGQNVGAY-GKDLKGET-NLADLLRELSKIDGIERIRF 226 Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 +SHP D++D LI+ + + +LHLPVQSGSDRILK MNR++T EY I+++IR+ Sbjct: 227 GSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAK 286 Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 PD AI++D IVGFPGET++DF T+DLV+++ + + SF YSPR GTP ++M +QV E Sbjct: 287 IPDAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEE 346 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVL--NS 442 VK ERL L +E + N VG+ +EVL+E + GK++G+L GR+ + VV Sbjct: 347 VKKERLERLIALQKEISLEKNKKYVGKTLEVLVEGEEGKKEGELTGRTENYKPVVFEGGV 406 Query: 443 KNHNIGDIIKVRITDVKISTLYG 465 + IG +KV+IT+ +L G Sbjct: 407 GKNLIGKFVKVKITEAAEYSLIG 429 >gnl|CDD|184625 PRK14328, PRK14328, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 439 Score = 436 bits (1124), Expect = e-123 Identities = 190/450 (42%), Positives = 289/450 (64%), Gaps = 17/450 (3%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 +++F+++YGCQMN DS ++ M S GYER + ++AD+I+ NTC +RE A KV+ Sbjct: 1 NKKYFIETYGCQMNEEDSEKLAGMLKSMGYERTENREEADIIIFNTCCVRENAENKVFGN 60 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141 LG ++ LK ++ +L++ V GC+ Q +G E+I ++ P V+++ G ++ PE L Sbjct: 61 LGELKKLK----EKNPNLIIGVCGCMMQQKGMAEKIKKKFPFVDIIFGTHNIHKFPEYLN 116 Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 R + GK V++ + +K + IV+G +RK V AF+TI GC+ FCT+C+VPY R Sbjct: 117 RVKEEGKSVIE----IWEKED--GIVEGLPIDRKSKVKAFVTIMYGCNNFCTYCIVPYVR 170 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 G E SR ++ E ++L+ G E+TLLGQNVN++ GK L EK F+DLL ++EI G Sbjct: 171 GRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSY-GKDL-EEKIDFADLLRRVNEIDG 228 Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319 L R+R+ TSHP+D+SD LI+A D D + ++HLPVQSGS+RILK MNR +T Y +++ Sbjct: 229 LERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELV 288 Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 ++I+S PD+AI++D IVGFPGET++DF T+DLV ++ Y AF+F YS R GTP + M Sbjct: 289 EKIKSNIPDVAITTDIIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTPAAKME 348 Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438 +QV E+VK ER L + + + N G+I+EVL+E K ++ KL GR+ + V Sbjct: 349 DQVPEDVKHERFNRLVELQNKISLEKNKEYEGKIVEVLVEGPSKNDENKLTGRTRTNKLV 408 Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++ V+IT +L GE++ Sbjct: 409 NFIGDKELIGKLVNVKITKANSFSLTGEVI 438 >gnl|CDD|162429 TIGR01574, miaB-methiolase, tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme. Length = 438 Score = 436 bits (1122), Expect = e-123 Identities = 184/447 (41%), Positives = 267/447 (59%), Gaps = 13/447 (2%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 + F+++YGCQMNV DS M + + +GY +AD++++NTC +REKA KV+ L Sbjct: 1 KLFIQTYGCQMNVRDSEHMAALLTAKEGYALTEDAKEADVLLINTCSVREKAEHKVFGEL 60 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144 G + LK K+ DL++ V GC+A G EI +R+P V+ V G + +RLP+ ++ Sbjct: 61 GGFKKLK----KKNPDLIIGVCGCMASHLGNEIFQRAPYVDFVFGTRNIHRLPQAIKTPL 116 Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGV-TAFLTIQEGCDKFCTFCVVPYTRGIE 202 K VVD D + + R G+ +F+ I GC+KFCT+C+VPYTRG E Sbjct: 117 TQKFMVVDIDSDESEVAGYFADF-----RNEGIYKSFINIMIGCNKFCTYCIVPYTRGDE 171 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 ISR ++ E +KL + GV EITLLGQNVNA+RGK +G+ FSDLL LS I G+ R Sbjct: 172 ISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELSTIDGIER 231 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+SHP D D LI+ + L +HLPVQSGS ILK M R +T Y ++ ++ Sbjct: 232 IRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKL 291 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ P+++IS+D IVGFPGET++DF T+DL+ ++ + AFSF YSPR GTP ++M +Q+ Sbjct: 292 RAACPNVSISTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTPAADMPDQI 351 Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441 E +K RL LQ + E G+ +VL+E + +L GR+ V Sbjct: 352 PEEIKKRRLQRLQARHNEILDKKMRKQEGKTFKVLVEGLSRNNPEELAGRTENNFLVNFE 411 Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468 IG + V+IT+VK +L GE+V Sbjct: 412 GSEDLIGKFVDVKITNVKRMSLRGEIV 438 >gnl|CDD|172813 PRK14337, PRK14337, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 446 Score = 402 bits (1036), Expect = e-113 Identities = 183/453 (40%), Positives = 266/453 (58%), Gaps = 22/453 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 F + ++GCQMNV DS + ++G+ ++A + ++NTC +R+K +KVYS LG Sbjct: 5 TFHIITFGCQMNVNDSDWLARALVARGFTEA-PEEEARVFIVNTCSVRDKPEQKVYSLLG 63 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143 RIR K+ D+ V V GCVAQ G R P V +V G P+ LER Sbjct: 64 RIR----HATKKNPDVFVAVGGCVAQQIGSGFFSRFPQVRLVFGTDGIAMAPQALERLAE 119 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R+ D+S E ER ++ G +AF+ I +GCD FC +C+VPYTRG + Sbjct: 120 EPDLRLSLLDFS-EHYPEREALWGNG---TVPASAFVNIMQGCDNFCAYCIVPYTRGRQK 175 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLV 261 SRS + V+DE R L+D G EITLLGQNVN++ G D G+ +F+ LL+ ++ + GL Sbjct: 176 SRSSAAVLDECRALVDRGAREITLLGQNVNSY---GQDKHGDGTSFAQLLHKVAALPGLE 232 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 RLR+TT HP+D++ +I+A G+L L P LHLP+QSGSDRILK+M R++ Y I+ Sbjct: 233 RLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTD 292 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 +R+ RPDIA+++D IVGFPGET++DF T++ + +G+A +FSF YS R GT + + Sbjct: 293 LRAARPDIALTTDLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTRAEMLPGK 352 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV----GRSPW--L 435 V E VK+ RL LQ+ E + A VG+ VL+E ++ G+ GR P + Sbjct: 353 VPEEVKSARLARLQELQNELTERWLQARVGRKTTVLLEGPSRKPGEGGDSWQGRDPGGRV 412 Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 +V L + G ++ VRIT+ K +L GE Sbjct: 413 VNVPLPAGADLTGRLVPVRITEAKKHSLVGEPA 445 >gnl|CDD|184628 PRK14331, PRK14331, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 437 Score = 391 bits (1007), Expect = e-109 Identities = 186/451 (41%), Positives = 283/451 (62%), Gaps = 26/451 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 ++++K++GCQMN DS +++ + + GYE + ++ADLI++NTC IREK +KV S LG Sbjct: 2 KYYIKTFGCQMNFNDSEKIKGILQTLGYEPADDWEEADLILVNTCTIREKPDQKVLSHLG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 + +K + L+ V GC+AQ G EI++++P +++V G + LPELLE+A+ Sbjct: 62 EYKKIKEKN----PNALIGVCGCLAQRAGYEIVQKAPFIDIVFGTFNIHHLPELLEQAKA 117 Query: 146 GKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G + + + D E+K + V R A++T+ GCDK CT+CVVP TRG Sbjct: 118 GNKAIEILEEIDED-ENKLDEYPTV-----RDNKYCAYVTVMRGCDKKCTYCVVPKTRGK 171 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR L ++DE + L+D+GV EI L+GQNV A+ G D FS+LLY+++EI G+ Sbjct: 172 ERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAY---GKDIGDVPFSELLYAVAEIDGVE 228 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TT HPRD+ + +IKA D+ + +LHLP Q+GSDRILK M+R +T EY + I+ Sbjct: 229 RIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIEL 288 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 ++ PDI S+D IVGFP ET++DF T+D++ K+ + Q FSFKYSPR GTP + M Q Sbjct: 289 LKEYIPDITFSTDIIVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTPAAYMEGQ 348 Query: 382 VDENVKAER---LLCLQKK-LREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 + VK +R LL LQK+ ++ +S+ G + EVL+E+ KE KL+GR+ + Sbjct: 349 EPDEVKTKRMNRLLELQKEITFKKALSYE----GTVQEVLVEEE-KEGNKLIGRTRTNKW 403 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 V + +G I+KV+I +L GE++ Sbjct: 404 VSIEGSQEMLGKIVKVKIIKSNPFSLEGEIL 434 >gnl|CDD|184626 PRK14329, PRK14329, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 467 Score = 387 bits (996), Expect = e-108 Identities = 189/458 (41%), Positives = 275/458 (60%), Gaps = 30/458 (6%) Query: 26 RFFVKSYGCQMNVYDS------LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 + F++SYGCQMN DS L+M GY ++++ADL+++NTC IR+ A +K Sbjct: 25 KLFIESYGCQMNFADSEIVASILQMA------GYNTTENLEEADLVLVNTCSIRDNAEQK 78 Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 V L + LK K+ L+V V GC+A+ +++L IV++VVGP Y LP L Sbjct: 79 VRKRLEKFNALK----KKNPKLIVGVLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNL 134 Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199 + G++ ++ S E+ + +S V G N GV+AF++I GCD CTFCVVP+TR Sbjct: 135 IAEVEEGRKAINVILSKEETYADISPVRLGGN---GVSAFVSIMRGCDNMCTFCVVPFTR 191 Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGEKCT-FSDLLYSLSE 256 G E SR +++E R L G E+TLLGQNV++ W G GL ++ F+ LL ++E Sbjct: 192 GRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAE 251 Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316 +R+R++TSHP+DM+D +++ D + ++HLPVQSGSDRILK MNR++T Y Sbjct: 252 AVPDMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYL 311 Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 ID IR + PD IS+D I GFP ET++D + T+ L++++GY AF FKYS R GT + Sbjct: 312 DRIDAIRRIIPDCGISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAA 371 Query: 377 NMLE-QVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGR 431 LE V E VK RL + LQ++L ++ N +G+ EVLIE K + +L GR Sbjct: 372 RKLEDDVPEEVKKRRLNEIIALQQELSLER---NQRDIGKTFEVLIEGVSKRSREQLFGR 428 Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 + + VV +N+ IGD + VRITD +TL GE V Sbjct: 429 NSQNKVVVFPKENYKIGDFVNVRITDCTSATLLGEAVG 466 >gnl|CDD|184624 PRK14327, PRK14327, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 509 Score = 372 bits (956), Expect = e-103 Identities = 181/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%) Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84 ++F++++YGCQMN +D+ M +F + GYE + +DAD+I+LNTC IRE A KV+ + Sbjct: 67 RKFYIRTYGCQMNEHDTEVMAGIFEALGYEPTDDTEDADVILLNTCAIRENAENKVFGEI 126 Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142 G +++LK +E DLL+ V GC++Q E +IL++ V+++ G +RLPE+L+ Sbjct: 127 GHLKHLK----RENPDLLIGVCGCMSQEESVVNKILKKYQHVDMIFGTHNIHRLPEILKE 182 Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 A F K +V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG Sbjct: 183 AYFSKEMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPYTRGK 237 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 E SR ++ E R L G EITLLGQNVNA+ GK + + DL+ + +I + Sbjct: 238 ERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDEIRKI-DIP 295 Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 R+R+TTSHPRD D LI+ L+ ++HLPVQSGS +LK M R++T Y +++ + Sbjct: 296 RVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRK 355 Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381 I+ P++A+++D IVGFP ETD+ F T+ L ++G+ A++F YSPR GTP + M + Sbjct: 356 IKEAIPNVALTTDIIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMKDN 415 Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440 V VK ERL L + E GQ +EVL+E K+ + L G + + V Sbjct: 416 VPMEVKKERLQRLNALVNEYSAKKMKRYEGQTVEVLVEGESKKNPEVLAGYTRKNKLVNF 475 Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468 IG ++KV+IT+ K +L GELV Sbjct: 476 KGPKSLIGQLVKVKITEAKTWSLNGELV 503 >gnl|CDD|184629 PRK14333, PRK14333, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 448 Score = 364 bits (936), Expect = e-101 Identities = 181/455 (39%), Positives = 277/455 (60%), Gaps = 23/455 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + +++ ++GCQMN DS RM + GY+ ADL++ NTC IR+ A +KVYS+ Sbjct: 6 RRSYWITTFGCQMNKADSERMAGILEDMGYQWAEDELQADLVLYNTCTIRDNAEQKVYSY 65 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LGR + R + DL +VVAGCVAQ EGE +LRR P +++V+GPQ RL +LLE+ Sbjct: 66 LGR----QAKRKHKNPDLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLEDLLEQV 121 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G +VV T E + I++ +R +TA++ + GC++ CT+CVVP RG Sbjct: 122 DAGNQVVAT--------EEIHILEDITKPRRDSSITAWVNVIYGCNERCTYCVVPSVRGK 173 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLS 255 E SR+ + E +L G EITLLGQN++A+ G+ L G + T +DLLY + Sbjct: 174 EQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAY-GRDLPGTTPEGRHQHTLTDLLYYIH 232 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 +++G+ R+R+ TSHPR ++ LIKA +L + + H+P QSG + ILK+M R +T +Y Sbjct: 233 DVEGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKY 292 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 R+IID+IR PD +IS+D IVGFPGET+ F T+ LV++IG+ Q + YSPR GTP Sbjct: 293 RRIIDKIREYMPDASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPA 352 Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPW 434 + Q+ E VK++RL L + ++ + +G+I EVL+E + K+ +++GR+ Sbjct: 353 ALWDNQLSEEVKSDRLQRLNHLVEQKAAERSQRYLGRIEEVLVEGINPKDPSQVMGRTRT 412 Query: 435 LQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468 + N GD++KV+IT+V+ +L GE + Sbjct: 413 NRLTFFEGDINQLKGDLVKVKITEVRAFSLTGEPL 447 >gnl|CDD|184623 PRK14326, PRK14326, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 502 Score = 357 bits (919), Expect = 3e-99 Identities = 166/446 (37%), Positives = 265/446 (59%), Gaps = 26/446 (5%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 + + V++YGCQMNV+DS R+ + + GY R DAD++V NTC +RE A ++Y Sbjct: 13 ARTYQVRTYGCQMNVHDSERLAGLLEAAGYVRAAEGQDADVVVFNTCAVRENADNRLYGN 72 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 LG + +K + + + V GC+AQ + + IL+R+P V+VV G LP LLERA Sbjct: 73 LGHLAPVKRAN----PGMQIAVGGCLAQKDRDTILKRAPWVDVVFGTHNIGSLPTLLERA 128 Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202 R K V+ S+E L R+ A+++I GC+ CTFC+VP RG E Sbjct: 129 RHNKEAQVEIAESLEQFPSTLPA-----RRESAYAAWVSISVGCNNTCTFCIVPSLRGKE 183 Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 R ++ E + L+D GV E+TLLGQNVNA+ G G++ FS LL + EI GL R Sbjct: 184 KDRRPGDILAEVQALVDEGVLEVTLLGQNVNAY-GVSF-GDRGAFSKLLRACGEIDGLER 241 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+T+ HP + +D +I+A + + P LH+P+QSGSDR+L++M R + + + I++++ Sbjct: 242 VRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKV 301 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382 R+ PD AI++D IVGFPGET++DF+AT+D+V + ++ AF+F+YS R GTP + M Q+ Sbjct: 302 RAAMPDAAITTDIIVGFPGETEEDFQATLDVVREARFSSAFTFQYSKRPGTPAAEMEGQL 361 Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK---EKGKLVGRSPWL 435 + V + ERL+ LQ+++ ++ N VG+ +E+L+ G+ ++ GR+ Sbjct: 362 PKAVVQERYERLVALQERISLEE---NRKLVGRTVELLVATGEGRKDAATHRMSGRARDG 418 Query: 436 Q----SVVLNSKNHNIGDIIKVRITD 457 + +V + GD++ V +T Sbjct: 419 RLVHFTVPEGAPEVRPGDVVTVTVTY 444 >gnl|CDD|172816 PRK14340, PRK14340, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 445 Score = 355 bits (913), Expect = 1e-98 Identities = 171/449 (38%), Positives = 257/449 (57%), Gaps = 22/449 (4%) Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83 ++F++ ++GCQMN DS + + +GY S +DAD+++LNTC +RE A E++ + Sbjct: 6 GRKFYIHTFGCQMNQADSEIITALLQDEGYVPAASEEDADIVLLNTCAVRENAVERIGHY 65 Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143 L ++ K R K LLV V GCV Q E EE+ P+++ + GP TY LP L+ A Sbjct: 66 LQHLKGAKRRR-KG---LLVGVLGCVPQYEREEMFSMFPVIDFLAGPDTYRVLPGLIADA 121 Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203 R G R D++ + + + V R ++AF+ + GC+ C FCVVP+TRG E Sbjct: 122 REGARPAALDFNQSETYAGIEPV-----RSGSISAFVPVMRGCNNMCAFCVVPFTRGRER 176 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVR 262 S + V+DE R L + G EITLLGQNVN++ D E F+ LL ++S +R Sbjct: 177 SHPFASVLDEVRALAEAGYREITLLGQNVNSYS----DPEAGADFAGLLDAVSRAAPEMR 232 Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 +R+TTSHP+D+S+ L++ + ++HLPVQSGS R+L+ MNR HT EY + I I Sbjct: 233 IRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALI 292 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381 RS P + +S+D I GF GET++D RAT+ L++++ + AF F YS R GT + + + Sbjct: 293 RSAIPGVTLSTDLIAGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTLAARTLPDD 352 Query: 382 VDENVKAERLLCLQKKLREQQ---VSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQS 437 V E VK R LQ+ + Q VG ++EVL E + +L+GR+ + Sbjct: 353 VPEEVKKRR---LQEIIDLQNGISAELFQRAVGSVVEVLAESESRRSSEQLMGRTDGNRV 409 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466 VV + GD+++VRIT +TL GE Sbjct: 410 VVFDRGGFQPGDLVRVRITGSTSATLSGE 438 >gnl|CDD|184627 PRK14330, PRK14330, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 434 Score = 342 bits (879), Expect = 1e-94 Identities = 170/449 (37%), Positives = 264/449 (58%), Gaps = 26/449 (5%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F++K++GCQMN DS M + +G+E ++ ++AD++++NTC +R K+ EK YS LG Sbjct: 2 KFYIKTFGCQMNENDSETMAGLLKKEGFEPASNPEEADVVIINTCAVRRKSEEKAYSELG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 ++ LK + ++ VAGCVA+ E E++L+R + V+G + ++ E ++RA Sbjct: 62 QLLKLKRKKNL-----IIGVAGCVAEKEREKLLKRG--ADFVIGTRAVPKVTEAVKRALN 114 Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEI 203 G++V EDK L + R R A++TI GC++FCT+C+VPYTRG E Sbjct: 115 GEKVAL----FEDK---LDEITYELPRIRSSKHHAWVTIIYGCNRFCTYCIVPYTRGREK 167 Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263 SR + +++E KL G E+T LGQNV+A+ GK L + + + LL S+I+G+ R+ Sbjct: 168 SRPMEDILEEVEKLAKQGYREVTFLGQNVDAY-GKDL-KDGSSLAKLLEEASKIEGIERI 225 Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 + TS+P D SD LI+ + + +HLPVQSGS+RILK MNRR+T EY ++I++IR Sbjct: 226 WFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIR 285 Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382 S PD +ISSD IVGFP ET++DF T+DLV+K + + YSPR GT + V Sbjct: 286 SKVPDASISSDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDV 345 Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439 K R LL LQK++ + N+ +G+ +E+++E K G GR + + Sbjct: 346 PYEEKVRRMQYLLNLQKRINRK---LNERYLGKTVEIIVEAKAKN-GLFYGRDIRNKIIA 401 Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468 + IG V+I + LYG++V Sbjct: 402 FEGEEELIGRFADVKIEKITAGPLYGKVV 430 >gnl|CDD|184633 PRK14338, PRK14338, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 459 Score = 326 bits (838), Expect = 6e-90 Identities = 163/458 (35%), Positives = 243/458 (53%), Gaps = 29/458 (6%) Query: 17 IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 D +R++V + GCQMNV DS R+E GY +DAD IVLN+C +R A Sbjct: 13 DRDATPRERRYYVWTVGCQMNVSDSERLEAALQGVGYSPAERPEDADFIVLNSCSVRASA 72 Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL-RRSPIVNVVVGPQTYYR 135 E++ LG ++ LK R D +V+ GC+ + I R P+V+ V P Sbjct: 73 EERILGKLGELQRLKRQR----PDTRIVLWGCMVGPNNQSIFAERLPMVDHFVSPSAVDE 128 Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195 + L + + ++ ++ VT + I GC+ C++CV+ Sbjct: 129 VVALAP--------NPIY-----QLDEPALPVADWSHP-PVTVHVPIIYGCNMSCSYCVI 174 Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 P RG E SR L+++V+E R++ G EITLLGQ V+++ G L G +DLL ++ Sbjct: 175 PLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSY-GHDLPGRP-DLADLLEAVH 232 Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315 EI GL RLR+ TSHP M+D LI A L P+++LPVQ+G D +LK M R +T Y Sbjct: 233 EIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARY 292 Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 R++I RIR PD+++++D IVG PGET++ F+ T DL+++I + + YSPR GT Sbjct: 293 RELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLA 352 Query: 376 SNM----LEQVDENVKAERLLCLQKKLREQ-QVSFNDACVGQIIEVLIEKHGKEKGKLVG 430 + M V K R L+ +L+EQ N +GQ +EVL+E G+ KGK G Sbjct: 353 AEMEDDPALAVPPEEKQRRRRALE-QLQEQIATERNARFLGQTVEVLVE--GEAKGKWRG 409 Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 R+ + V ++ G ++ VRIT +L GELV Sbjct: 410 RTRGNKLVFFSAPGDWTGKLVPVRITHTSPWSLQGELV 447 >gnl|CDD|184634 PRK14339, PRK14339, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 420 Score = 326 bits (838), Expect = 7e-90 Identities = 167/436 (38%), Positives = 250/436 (57%), Gaps = 20/436 (4%) Query: 36 MNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94 MNV DS M ++ + Y+ + +ADLI++NTC +REK K++S +G+ +K Sbjct: 1 MNVRDSEHMIAELSQKEDYKLTQDIKEADLILINTCSVREKPVHKLFSEIGQFNKIKKEG 60 Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154 K G V GC A GEEI++R+P V+ V+G + ++ +++ + + VD DY Sbjct: 61 AKIG------VCGCTASHLGEEIIKRAPYVDFVLGARNVSKISQVIHTPKAVE--VDIDY 112 Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 E + RK + + I GCDK CT+C+VP+TRG EIS + ++ EA Sbjct: 113 D-ESTYAF------ADFRKSPYKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEA 165 Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 K ++NG EI LLGQNVN + GK EK FSDLL LSEI+GL R+R+T+ HP Sbjct: 166 EKAVNNGAKEIFLLGQNVNNY-GKRFSSEHEKVDFSDLLDKLSEIEGLERIRFTSPHPLH 224 Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 M D ++ + +H+P+QSGS ILK+M R +T + +++R++ P+++IS Sbjct: 225 MDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVSIS 284 Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 +D IVGFPGE+D DF TMD+++K+ + Q FSFKYSPR T + QVDE V +ERL Sbjct: 285 TDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTEAAAWKNQVDEEVASERLE 344 Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452 LQ + +E VG+ VL E+ + G + GRS + V + +G+ +K Sbjct: 345 RLQNRHKEILDEIAKKEVGKTHVVLFEEL-RANGGVAGRSDNNKLVQVKGSEELLGEFVK 403 Query: 453 VRITDVKISTLYGELV 468 V+IT+ LYGE+V Sbjct: 404 VKITNASRGVLYGEIV 419 >gnl|CDD|184631 PRK14335, PRK14335, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 455 Score = 324 bits (833), Expect = 2e-89 Identities = 150/457 (32%), Positives = 250/457 (54%), Gaps = 21/457 (4%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 +F ++YGCQMNV +S ME + ++G+ + + D++++NTC +R A +V+ LG Sbjct: 2 TYFFETYGCQMNVAESASMEQLLLARGWTKAVDAETCDVLIINTCSVRITAETRVFGRLG 61 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145 +LK R +++ GC+A+ +EI + P ++ VVG + RL + + Sbjct: 62 LFSSLKKKR-----AFFIILMGCMAERLHDEIQKEFPRIDYVVGTFAHARLESIFQEIE- 115 Query: 146 GKRVVDTDYSVEDKFERLS--IVDGGY-----NRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 ++ DY E ER V G + +F+ I GC+ FC++C+VPY Sbjct: 116 -AKLKQDDYRFEFISERYREHPVSGYRFFPSSYSEGSFQSFIPIMNGCNNFCSYCIVPYV 174 Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL---S 255 RG EISR L ++ E L + GV EITLLGQNVN++RG+ +G TF LL + + Sbjct: 175 RGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRA 234 Query: 256 EIKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 E+ +R +R+ +SHP+D+SD LI L +HLPVQ GS+ +LK MNR +T Sbjct: 235 EVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREH 294 Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 Y ++ ++++ P++A+S+D ++GFPGET++DF T+DL+ ++ + AF + Y+PR GTP Sbjct: 295 YLSLVGKLKASIPNVALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTP 354 Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSP 433 + +++ + VK RL + + A VG+ + VL+E + +L G + Sbjct: 355 AYDFPDRIPDEVKIARLQRVIALQMSITLKKMKARVGKTLPVLVESRSRNNPEELFGHTE 414 Query: 434 WLQSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468 + VL K IG + V++ +++ T LV Sbjct: 415 LGEMTVLEGKVDETLIGRFVDVQLKELRGRTFRAHLV 451 >gnl|CDD|184630 PRK14334, PRK14334, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 440 Score = 317 bits (813), Expect = 4e-87 Identities = 165/439 (37%), Positives = 249/439 (56%), Gaps = 19/439 (4%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 +YGCQMN YD+ +E S G E V+S+D+AD +++NTC +R K EKV S LG +R Sbjct: 7 TYGCQMNEYDTHLVESELVSLGAEIVDSVDEADFVLVNTCAVRGKPVEKVRSLLGELR-- 64 Query: 91 KNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149 + K L+V + GC+AQ EG+++ R+ V+V++GP + + LE +R Sbjct: 65 ---KEKAQRPLVVGMMGCLAQLEEGQQMARKFG-VDVLLGPGALTDIGKALEA---NERF 117 Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209 + ++ + + G ++A LTI GC+ CT+C+VP TRG E+SR Sbjct: 118 WGLQFK-DELHDHIPPPPQG-----KLSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDL 171 Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 ++ E L GV E+TLLGQNVN++ G G +F++LL + G+ R+++TTSH Sbjct: 172 ILRELELLKAAGVQEVTLLGQNVNSY-GVDQPGFP-SFAELLRLVGAS-GIPRVKFTTSH 228 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 P + +D +I A + + Y+HLPVQSGSDR+L+ M R + +Y + I IR PD+ Sbjct: 229 PMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDV 288 Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 +S+D IVGFPGET++DF+ T+ L D++GY A+ F YSPR GTP + + VK E Sbjct: 289 VLSTDIIVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQDLPREVKTE 348 Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449 RL L +K +E N VG+ EVL+ K+ G L G + V++ + Sbjct: 349 RLQRLIEKQKEWSYRRNARWVGRTQEVLVRGDAKDAGFLEGHTRGNHPVLVPASQAPGPG 408 Query: 450 IIKVRITDVKISTLYGELV 468 + +VRI LYGE+V Sbjct: 409 LYQVRIKQATPHMLYGEVV 427 >gnl|CDD|172808 PRK14332, PRK14332, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 449 Score = 301 bits (772), Expect = 3e-82 Identities = 162/468 (34%), Positives = 266/468 (56%), Gaps = 32/468 (6%) Query: 15 SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74 Q+++ + ++++YGCQMN YDS + + Y N +++D+I LNTC IRE Sbjct: 1 MQVLEPEKKLGKVYIETYGCQMNEYDSGIVSSLMRDAEYSTSNDPENSDIIFLNTCAIRE 60 Query: 75 KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134 A K+Y+ L + LK K +L++ V GC+AQ G+++ + +++VVGP Y Sbjct: 61 NAHAKIYNRLQSLGYLK----KRNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYR 116 Query: 135 RLPELLERARFGKRVVD-TDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCT 191 LPEL++R R G++ + T S + ++ + +V+G + AF+TI GC+ FCT Sbjct: 117 SLPELIQRIRNGEKSISLTRLSKIETYDEIEPRVVNG-------IQAFVTIMRGCNNFCT 169 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 FCVVPYTRG E SR +V E + L + G+ ++TLLGQNVN+++ + D F+ L+ Sbjct: 170 FCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTD-----FAGLI 224 Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311 L + + R+R+T+ HP+D D L+ P +HLP+Q+G+ R+L+ M R ++ Sbjct: 225 QMLLDETTIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYS 284 Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 E+ ++ IR++ PD+ I++D IVGFP ET+++F T+ +V ++ + AF FKYS R Sbjct: 285 KEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYSERE 344 Query: 372 GTPGSNML-EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKG 426 GT L + V E VK+ R L+ LQ + +Q N A +G++ +LIE K + Sbjct: 345 GTMAKRKLPDNVPEEVKSARLTKLVDLQTSISHEQ---NRARIGRVYSILIENTSRKSEK 401 Query: 427 KLVGRSPWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGELVV 469 +L GR+P + V + IG + V I +TL G+++V Sbjct: 402 QLCGRTPCGRMTVFPLPEGQDLSDMIGSTVSVLIESATSATLKGKILV 449 >gnl|CDD|184632 PRK14336, PRK14336, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 418 Score = 298 bits (764), Expect = 2e-81 Identities = 154/443 (34%), Positives = 243/443 (54%), Gaps = 34/443 (7%) Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86 +++ + GCQMN +S R+ +F GY + +DA+L+++N+C +RE A KV + L Sbjct: 4 YYLWTIGCQMNQAESERLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVINRLHL 63 Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146 +R LKN K L + + GC+ + I ++ P V+ + GP + +P+ E Sbjct: 64 LRKLKNKNPK----LKIALTGCLVGQDISLIRKKFPFVDYIFGPGS---MPDWRE----- 111 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 + + F I+ K V+A +TI +GCD FCT+CVVPY RG E SRS Sbjct: 112 ---------IPEGF----ILPL----KPPVSANVTIMQGCDNFCTYCVVPYRRGREKSRS 154 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 ++++ E +L+ G E+ LLGQNV+++ G L + C +DLL +L +I GL+R+R+ Sbjct: 155 IAEIGCEVAELVRRGSREVVLLGQNVDSY-GHDLPEKPC-LADLLSALHDIPGLLRIRFL 212 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 TSHP+D+S LI A L + L LPVQ+G D IL +M R +T +YR++++R+++ Sbjct: 213 TSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAM 272 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDEN 385 PDI++ +D IVGFP ET++ F + L+ IGY YSPR T + +M + V Sbjct: 273 PDISLQTDLIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVI 332 Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445 K RL ++ +E N A + EVL+E G +K K GR+ + V L S Sbjct: 333 EKKRRLKLIEDLQKETVGKANAALMDTFAEVLVE--GLQKNKWQGRTLGGKLVFLESDLP 390 Query: 446 NIGDIIKVRITDVKISTLYGELV 468 G ++ V+I +L +LV Sbjct: 391 LEGCLVNVKIFKTSPWSLQAKLV 413 >gnl|CDD|162433 TIGR01579, MiaB-like-C, MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. Length = 414 Score = 279 bits (715), Expect = 1e-75 Identities = 136/430 (31%), Positives = 239/430 (55%), Gaps = 19/430 (4%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 +++ GC++N Y+S +++ +GYE V D AD+ ++NTC + KA K + R R Sbjct: 1 IETLGCRVNQYESESLKNQLIQKGYEVVPDEDKADVYIINTCTVTAKADSKARRAIRRAR 60 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFG 146 ++ ++V GC AQ+ +E+ V++V+G + ++ +LL Sbjct: 61 -------RQNPTAKIIVTGCYAQSNPKELADL-KDVDLVLGNKEKDKINKLLSLGLKTSF 112 Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206 RV + ++S E + AF+ +Q+GC+ FC++C++P+ RG S Sbjct: 113 YRVKNKNFSREKGVPEYEE----VAFEGHTRAFIKVQDGCNFFCSYCIIPFARGRSRSVP 168 Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266 + ++ + + L+ G EI L G N+ ++ G L + + LL + +I G+ R+R + Sbjct: 169 MEAILKQVKILVAKGYKEIVLTGVNLGSY-GDDLKN-GTSLAKLLEQILQIPGIKRIRLS 226 Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 + P D+ + L++A L P+LHL +QSGSDR+LK M R++T ++ ++++++RSVR Sbjct: 227 SIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR 286 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 PD A +D IVGFPGE+++DF+ T+ +V +I ++ F YS R GTP S M ++V E + Sbjct: 287 PDYAFGTDIIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTPASTMKDKVPETI 346 Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV-VLNSKNH 445 K ER+ L++ + F +G+ +EVL+EK ++ G L G S + V V + K Sbjct: 347 KKERVKRLKELAEKNYQEFLKKNIGKELEVLVEK--EKAGVLTGYSEYYLKVKVESDKGV 404 Query: 446 NIGDIIKVRI 455 G++I VRI Sbjct: 405 AAGELISVRI 414 >gnl|CDD|162211 TIGR01125, TIGR01125, MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes. Length = 430 Score = 264 bits (677), Expect = 3e-71 Identities = 142/449 (31%), Positives = 227/449 (50%), Gaps = 34/449 (7%) Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 S GC N+ DS M + GYE + +DAD +++NTC E A ++ +G Sbjct: 4 FISLGCPKNLVDSEVMLGILREAGYEVTPNYEDADYVIVNTCGFIEDARQESIDTIG--- 60 Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148 G V+V GC+ Q EE+ P V+ + G + +E G + Sbjct: 61 ----ELADAGKK--VIVTGCLVQRYKEELKEEIPEVHAITGSGDVENILNAIESREPGDK 114 Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208 + + R+ + Y A+L + EGC++ C FC++P RG SR + Sbjct: 115 IPFKSEIEMGEVPRILLTPRHY-------AYLKVAEGCNRRCAFCIIPSIRGKLRSRPIE 167 Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268 +++ EA +L+D GV EI L+ Q+ A+ GK L E DLL L ++ G+ +R Sbjct: 168 EILKEAERLVDQGVKEIILIAQDTTAY-GKDLYRES-KLVDLLEELGKVGGIYWIRMHYL 225 Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 +P +++D +I + ++PYL +P+Q SDRILK M R + + I+R+R PD Sbjct: 226 YPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPD 285 Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 + + FIVGFPGET++DF+ +D V++ + + +F YSP GT + +QV E VK Sbjct: 286 AVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTDAFALPDQVPEEVKE 345 Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQS------V 438 ER L+ LQ+++ ++ N VG+ IEVLI+ + L+GR+ + Q+ V Sbjct: 346 ERLERLMQLQQRISAKK---NQEFVGKKIEVLIDGYEPETNLLLIGRT-YGQAPEVDGVV 401 Query: 439 VLNSK--NHNIGDIIKVRITDVKISTLYG 465 +N N IGDI++V IT L+G Sbjct: 402 YVNGAKLNVKIGDILRVVITGTDEYDLWG 430 >gnl|CDD|162432 TIGR01578, MiaB-like-B, MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model. Length = 420 Score = 235 bits (602), Expect = 2e-62 Identities = 146/451 (32%), Positives = 233/451 (51%), Gaps = 39/451 (8%) Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85 + +V++YGC +N DS M++ + G+E VN+ ++ADL +LNTC ++ K + L Sbjct: 1 KVYVETYGCTLNNGDSEIMKNSLAAYGHELVNNAEEADLAILNTCTVKNKTEDT---MLY 57 Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--- 142 RI +L G VVVAGC+ QA+ E + + +V+ G Q RL E++E Sbjct: 58 RIESLMR----NGKH--VVVAGCMPQAQKESVYDNGSVASVL-GVQAIDRLVEVVEETLK 110 Query: 143 -ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201 G+R T S+ RK + + I +GC C++C+ + RG Sbjct: 111 KKVHGRREAGTPLSLPKP------------RKNPLIEIIPINQGCLGNCSYCITKHARGK 158 Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260 S ++V++AR+L+ G EI + Q+ A+ G D G + +LL ++EI G Sbjct: 159 LASYPPEKIVEKARQLVAEGCKEIWITSQDTGAY---GRDIGSR--LPELLRLITEIPGE 213 Query: 261 VRLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 RLR +P++ + D L + + + +LHLPVQSGSD +LK M R +T ++ Sbjct: 214 FRLRVGMMNPKNVLEILDELANVY-QHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFED 272 Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 I+D+ R PD+ +S+D IVGFP ETDDDF TM+L+ K + K+SPR GTP + Sbjct: 273 IVDKFRERFPDLTLSTDIIVGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTPAAK 332 Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437 M +++ N+ +R L K + + D +G + VL+ K G KG + + Sbjct: 333 M-KRIPTNIVKKRSKRLTKLYEQVLLEMRDNLIGTRVHVLVTKEG--KGDSLDDEDAYRQ 389 Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 VV+ S+ G+ V IT K + L GE++ Sbjct: 390 VVIRSRTREPGEFAGVEITGAKTAYLIGEII 420 >gnl|CDD|184864 PRK14862, rimO, ribosomal protein S12 methylthiotransferase; Provisional. Length = 440 Score = 198 bits (506), Expect = 2e-51 Identities = 154/482 (31%), Positives = 235/482 (48%), Gaps = 94/482 (19%) Query: 28 FVKSYGCQMNVYDS------LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81 FV S GC + DS LR E GYE S D ADL+++NTC + A ++ Sbjct: 12 FV-SLGCPKALVDSERILTQLRAE------GYEISPSYDGADLVIVNTCGFIDSAVQESL 64 Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141 +G + E G V+V GC+ A+ ++I P V V GP Y Sbjct: 65 EAIG-------EALAENGK--VIVTGCLG-AKEDQIREVHPKVLAVTGPHAY-------- 106 Query: 142 RARFGKRVVDTDYSV----EDKFERLSIVDGGYNRKRGVT------AFLTIQEGCDKFCT 191 ++V++ + D F + +V +GV A+L I EGC+ CT Sbjct: 107 -----EQVMEAVHEHVPKPHDPF--VDLVP-----PQGVKLTPRHYAYLKISEGCNHRCT 154 Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGL 240 FC++P RG +SR + V+ EA +L+ GV E+ ++ Q+ +A W G+ + Sbjct: 155 FCIIPSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPV 214 Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300 K +DL +L E+ VRL Y +P D +I + +L PYL +P Q S Sbjct: 215 ---KTRMTDLCEALGELGAWVRLHYVYPYPH--VDEVIPLMAEGKIL-PYLDIPFQHASP 268 Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 R+LK M +R + E + ++RI+ R PD+ I S FIVGFPGET++DF+ +D + + Sbjct: 269 RVLKRM-KRPASVE--KTLERIKKWREICPDLTIRSTFIVGFPGETEEDFQMLLDFLKE- 324 Query: 358 GYAQ---AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQ 412 AQ FKYSP G +++ +QV E VK ER + +QQ+S VG+ Sbjct: 325 --AQLDRVGCFKYSPVEGATANDLPDQVPEEVKEERWARFMEV--QQQISAARLQRKVGR 380 Query: 413 IIEVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGE 466 ++VLI++ +E +GRS P + VV +GDI++V+ITD L+GE Sbjct: 381 TLQVLIDEVDEEGA--IGRSKADAPEIDGVVYLNGETGLKVGDIVRVKITDADEYDLWGE 438 Query: 467 LV 468 +V Sbjct: 439 VV 440 >gnl|CDD|128968 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. Length = 216 Score = 159 bits (403), Expect = 2e-39 Identities = 74/218 (33%), Positives = 113/218 (51%), Gaps = 7/218 (3%) Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 A I GC + CTFC P RG SR L +V E L + G EI L+G Sbjct: 1 PLALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEI-LVGTVFIGG 59 Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGL--VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293 L + +LL ++ EI GL + P +++ L++A + V + L Sbjct: 60 GTPTLLSPE-QLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEAGV--NRVSL 116 Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 VQSGSD +LK++NR HT + + ++++R P I +S+D IVG PGET++DF T+ L Sbjct: 117 GVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGP-IKVSTDLIVGLPGETEEDFEETLKL 175 Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391 + ++G + F SPR GTP + + +++ K ERL Sbjct: 176 LKELGPDRVSIFPLSPRPGTPLAKLYKRLKPPDKEERL 213 >gnl|CDD|181291 PRK08207, PRK08207, coproporphyrinogen III oxidase; Provisional. Length = 488 Score = 46.4 bits (111), Expect = 2e-05 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 7/64 (10%) Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI---AISSDFIVGFPGETDDDFRATMD 352 Q+ +D LK++ R HT II++ R ++ I+ D I+G PGE ++ + T++ Sbjct: 288 QTMNDETLKAIGRHHT---VEDIIEKFHLAR-EMGFDNINMDLIIGLPGEGLEEVKHTLE 343 Query: 353 LVDK 356 ++K Sbjct: 344 EIEK 347 >gnl|CDD|132511 TIGR03471, HpnJ, hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. Length = 472 Score = 45.1 bits (107), Expect = 4e-05 Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 38/181 (20%) Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244 GC CTFC+ P T G R+ S ++ + E+ +N R D + Sbjct: 205 GCPSKCTFCLWPQTVGGHRYRTRSA---------ESVIEEVKYALENFPEVREFFFDDD- 254 Query: 245 CTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296 TF+D EI + L L T S C +A+ D + L + L + + Sbjct: 255 -TFTDDKPRAEEIARKLGPLGVTWS-------CNARANVDYETLKVMKENGLRLLLVGYE 306 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-----IAISSDFIVGFPGETDDDFRATM 351 SG +ILK++ + T ++ R D I + FI+G PGET + R T+ Sbjct: 307 SGDQQILKNIKKGLT-------VEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTI 359 Query: 352 D 352 D Sbjct: 360 D 360 >gnl|CDD|130279 TIGR01212, TIGR01212, radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. Length = 302 Score = 44.4 bits (105), Expect = 6e-05 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 12/92 (13%) Query: 275 DCLIKAHGDLDVLMPY--------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 DC+ LD+L Y + L +Q+ D+ LK +NR H Y + R R + Sbjct: 119 DCVPDEV--LDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFACYVDAVKRAR--K 174 Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 I + S I+G PGE ++ T +V + Sbjct: 175 RGIKVCSHVILGLPGEDREEMMETAKIVSLLD 206 >gnl|CDD|180172 PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated. Length = 375 Score = 41.5 bits (98), Expect = 5e-04 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 QS + +L ++R HT R+ + ++ D I G PGE+DDD+RA++D Sbjct: 127 QSAAPHVLAVLDRTHTPGRAVAAAREARAAGFE-HVNLDLIYGTPGESDDDWRASLDAA 184 >gnl|CDD|181509 PRK08629, PRK08629, coproporphyrinogen III oxidase; Provisional. Length = 433 Score = 40.0 bits (94), Expect = 0.001 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--RPDIAISSDFIVGFPGETDDDFRATMD 352 VQS +D ILK ++R ++ ++I I I+ D I FPG+TD+ + +D Sbjct: 163 VQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFPI-INVDLIFNFPGQTDEVLQHDLD 221 Query: 353 LVDKIGYAQ 361 + ++ Q Sbjct: 222 IAKRLDPRQ 230 >gnl|CDD|181630 PRK09058, PRK09058, coproporphyrinogen III oxidase; Provisional. Length = 449 Score = 39.9 bits (94), Expect = 0.001 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIR--SVRPDIAISSDFIVGFPGETDDDFRATMD 352 VQS + ++ + R+ +++ R+ R A+ D I G PG+T + ++ + Sbjct: 181 VQSFNTQVRRRAGRKDDR---EEVLARLEELVARDRAAVVCDLIFGLPGQTPEIWQQDLA 237 Query: 353 LVDKIG 358 +V +G Sbjct: 238 IVRDLG 243 >gnl|CDD|181496 PRK08599, PRK08599, coproporphyrinogen III oxidase; Provisional. Length = 377 Score = 38.3 bits (90), Expect = 0.005 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Query: 284 LDVLMPY----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339 L VL + L VQ+ +D +LK + R H + + I + D IS D I Sbjct: 103 LQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFD-NISIDLIYAL 161 Query: 340 PGETDDDFRATMD 352 PG+T +DF+ ++ Sbjct: 162 PGQTIEDFKESLA 174 >gnl|CDD|181453 PRK08508, PRK08508, biotin synthase; Provisional. Length = 279 Score = 36.1 bits (84), Expect = 0.017 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 16/70 (22%) Query: 185 GCDKFCTFCVVPYTRGIEISR----SLSQVVDEARKLIDNGV---CEITLLGQNVNAWRG 237 C + C +C +I R + Q+V EA+ NG C +T G Sbjct: 16 NCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVT---------SG 66 Query: 238 KGLDGEKCTF 247 +GLD +K + Sbjct: 67 RGLDDKKLEY 76 >gnl|CDD|180263 PRK05799, PRK05799, coproporphyrinogen III oxidase; Provisional. Length = 374 Score = 34.2 bits (79), Expect = 0.066 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355 Q+ + +LK + R HT E+ + R + + I+ D + G P +T +D++ T++ V Sbjct: 118 QAWQNSLLKYLGRIHTFEEFLENYKLARKLGFN-NINVDLMFGLPNQTLEDWKETLEKVV 176 Query: 356 KI 357 ++ Sbjct: 177 EL 178 >gnl|CDD|181629 PRK09057, PRK09057, coproporphyrinogen III oxidase; Provisional. Length = 380 Score = 34.5 bits (80), Expect = 0.067 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 L VQ+ +D L+ + R H+ E ID R + P +S D I PG+T +RA + Sbjct: 120 LGVQALNDADLRFLGRLHSVAEALAAIDLAREIFP--RVSFDLIYARPGQTLAAWRA--E 175 Query: 353 LVDKIGYA 360 L + + A Sbjct: 176 LKEALSLA 183 >gnl|CDD|181292 PRK08208, PRK08208, coproporphyrinogen III oxidase; Validated. Length = 430 Score = 33.4 bits (77), Expect = 0.14 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMD 352 VQS D L +++R + Q ++ IR+ P + I D I G PG+T + ++D Sbjct: 159 VQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNI--DLIYGIPGQTHASWMESLD 215 >gnl|CDD|181727 PRK09249, PRK09249, coproporphyrinogen III oxidase; Provisional. Length = 453 Score = 31.2 bits (72), Expect = 0.54 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 15/77 (19%) Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS---DFIVGFPGETDDDFRATM 351 VQ + K++NR +++ R ++ +S D I G P +T + F T+ Sbjct: 169 VQDFDPEVQKAVNRIQPFEFTFALVEAAR----ELGFTSINIDLIYGLPKQTPESFARTL 224 Query: 352 DLV-----DKI---GYA 360 + V D++ YA Sbjct: 225 EKVLELRPDRLAVFNYA 241 >gnl|CDD|180192 PRK05673, dnaE, DNA polymerase III subunit alpha; Validated. Length = 1135 Score = 30.5 bits (70), Expect = 0.89 Identities = 9/32 (28%), Positives = 16/32 (50%) Query: 43 RMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74 R+E M FS+ E+ + + D IV+ + Sbjct: 1011 RIEVMLFSEALEKYRDLLEEDRIVVVKGQVSF 1042 >gnl|CDD|165912 PLN02270, PLN02270, phospholipase D alpha. Length = 808 Score = 29.5 bits (66), Expect = 1.7 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 9/88 (10%) Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQ-------GYERVNSMDDADLIVLNTCHIREK 75 VP FF + GC++++Y + D F + YE +D + N H+ Sbjct: 168 VPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIYI 227 Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLV 103 VY+ + +R+ + R K GGD+ + Sbjct: 228 TGWSVYTEISLVRD--SRRPKPGGDVTI 253 >gnl|CDD|180953 PRK07379, PRK07379, coproporphyrinogen III oxidase; Provisional. Length = 400 Score = 29.6 bits (67), Expect = 1.8 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 L VQ+ D +L R H + +D I S D I G P +T +D++A+++ Sbjct: 131 LGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGI-ENFSLDLISGLPHQTLEDWQASLE 189 Query: 353 LVDKIG 358 + Sbjct: 190 AAIALN 195 >gnl|CDD|180115 PRK05481, PRK05481, lipoyl synthase; Provisional. Length = 289 Score = 29.3 bits (67), Expect = 2.0 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 ++ R + + P I S +VG GETD++ MD Sbjct: 185 LLKRAKELHPGIPTKSGLMVGL-GETDEEVLEVMD 218 >gnl|CDD|172935 PRK14460, PRK14460, ribosomal RNA large subunit methyltransferase N; Provisional. Length = 354 Score = 28.9 bits (65), Expect = 2.9 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Query: 174 RGVTAFLTIQEGCDKFCTFC---VVPYTRGIEISRSLSQVVDEARKLIDNGV 222 R T L+ Q GC CTFC + + R + + L QV+ L DNG Sbjct: 100 RRYTQCLSCQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDNGP 151 >gnl|CDD|183872 PRK13149, PRK13149, H/ACA RNA-protein complex component Gar1; Reviewed. Length = 73 Score = 28.7 bits (65), Expect = 2.9 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%) Query: 413 IIEVLIEKHGKEKGKLVGRS---PWLQSVVLNSKNHNIGDIIKV 453 + +VL H KGKL+ R P + SVV + K IG ++ V Sbjct: 4 LGKVL---HYAPKGKLIIRLDKQPPIGSVVYDKKLKKIGKVVDV 44 >gnl|CDD|135651 PRK05904, PRK05904, coproporphyrinogen III oxidase; Provisional. Length = 353 Score = 28.6 bits (64), Expect = 3.2 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 L VQS ++ ILK +NR HT + ++ I+ + IS DF+ P D + Sbjct: 119 LGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGI-YNISCDFLYCLPILKLKDLDEVFN 177 Query: 353 LVDK 356 + K Sbjct: 178 FILK 181 >gnl|CDD|131081 TIGR02026, BchE, magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. Length = 497 Score = 28.7 bits (64), Expect = 3.3 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 L + T ++ I +R + +I + FI GF ETD+ F T + QA Sbjct: 313 LDHFRKGTTTSTNKEAIRLLR--QHNILSEAQFITGFENETDETFEETYRQLLDWDPDQA 370 Query: 363 FSFKYSPRLGTP 374 Y+P T Sbjct: 371 NWLMYTPWPFTS 382 >gnl|CDD|129630 TIGR00539, hemN_rel, putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. Length = 360 Score = 28.7 bits (64), Expect = 3.5 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDD 346 L L VQS D L + R+H+A I+ + IS D + G P +T ++ Sbjct: 114 LSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIE-NISLDLMYGLPLQTLNSLKEE 172 Query: 347 FRATMDL 353 + +L Sbjct: 173 LKLAKEL 179 >gnl|CDD|129629 TIGR00538, hemN, oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. Length = 455 Score = 28.2 bits (63), Expect = 4.1 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 17/122 (13%) Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350 L VQ + + +++NR ++++ R +I+ D I G P +T + F T Sbjct: 165 LSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFT-SINIDLIYGLPKQTKESFAKT 223 Query: 351 MDLV-----DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405 ++ V D++ F++ + P ++ + L ++KL Q + Sbjct: 224 LEKVAELNPDRLA---VFNYAHVP--------WVKPAQRKIPEAALPSAEEKLDILQETI 272 Query: 406 ND 407 Sbjct: 273 AF 274 >gnl|CDD|162009 TIGR00717, rpsA, ribosomal protein S1. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned. Length = 516 Score = 28.2 bits (63), Expect = 4.6 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 13/65 (20%) Query: 410 VGQIIEVLIEKHGKEKGKL------VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463 VGQ ++V + K KEKG++ +G PW K +GD I R+T++ T Sbjct: 233 VGQEVKVKVIKFDKEKGRISLSLKQLGEDPWEAI----EKKFPVGDKITGRVTNL---TD 285 Query: 464 YGELV 468 YG V Sbjct: 286 YGVFV 290 >gnl|CDD|179920 PRK05054, PRK05054, exoribonuclease II; Provisional. Length = 644 Score = 27.9 bits (63), Expect = 5.3 Identities = 6/16 (37%), Positives = 12/16 (75%) Query: 447 IGDIIKVRITDVKIST 462 +GD+I V + +V++ T Sbjct: 621 LGDVIDVTLAEVRMET 636 >gnl|CDD|179482 PRK02842, PRK02842, light-independent protochlorophyllide reductase subunit N; Provisional. Length = 427 Score = 27.6 bits (62), Expect = 6.9 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 17/44 (38%) Query: 306 MNRRHTAYE----------------YRQIIDRIRSVRPDIAISS 333 +NRR A E RQ+ DRIR++RPD+ + Sbjct: 325 LNRRFLAAELALLPDGVRIVEGQDVERQL-DRIRALRPDLVVCG 367 >gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional. Length = 375 Score = 27.5 bits (61), Expect = 6.9 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232 Y GIE + LSQ+V+ AR D G+ +T G NV Sbjct: 319 YMIGIETTADLSQLVEAAR---DKGLIVLT-AGTNV 350 >gnl|CDD|183883 PRK13188, PRK13188, bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed. Length = 464 Score = 27.6 bits (62), Expect = 6.9 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 12/97 (12%) Query: 55 RVNSMDDADLIVLNTCH---------IREKAAEKVYSFLGRIRNLKNSRIKEGGDL---L 102 R+ M D D VL + H +E A + + FL + L + +GGDL + Sbjct: 156 RITVMVDFDSKVLGSQHATLFDLSEFKKEIAPARTFVFLHEVEALLEQGLIKGGDLDNAI 215 Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139 V+V ++Q E +++ ++ ++ V L Sbjct: 216 VIVDKEMSQEELDKLAKKFGKDHISVKENGILNNRPL 252 >gnl|CDD|180520 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed. Length = 565 Score = 27.4 bits (62), Expect = 7.1 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 10/56 (17%) Query: 410 VGQIIEVLIEKHGKEKGKL------VGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459 G +E ++ K EK ++ + P+ + K H G I+ +T+VK Sbjct: 421 KGDEVEAVVLKVDVEKERISLGIKQLEEDPFEEFA----KKHKKGSIVTGTVTEVK 472 >gnl|CDD|177473 PHA02691, PHA02691, hypothetical protein; Provisional. Length = 110 Score = 27.3 bits (60), Expect = 8.3 Identities = 13/32 (40%), Positives = 18/32 (56%) Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293 R R T +H R+ S +K GD+ L+P L L Sbjct: 77 RARVTVAHGREKSTFDLKRRGDVQTLLPILLL 108 >gnl|CDD|180134 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed. Length = 486 Score = 27.5 bits (62), Expect = 8.3 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 13/65 (20%) Query: 52 GYERVNSMDDA--DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109 ER ++ +A D++V++T H + L R+R IK + ++AG V Sbjct: 229 NEERAEALVEAGVDVLVVDTAHGHSEGV------LDRVR-----EIKAKYPDVQIIAGNV 277 Query: 110 AQAEG 114 A AE Sbjct: 278 ATAEA 282 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.140 0.409 Gapped Lambda K H 0.267 0.0681 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,780,213 Number of extensions: 520571 Number of successful extensions: 1206 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1098 Number of HSP's successfully gapped: 66 Length of query: 469 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 372 Effective length of database: 3,898,497 Effective search space: 1450240884 Effective search space used: 1450240884 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (26.6 bits)