RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase
(miaB-like) protein [Candidatus Liberibacter asiaticus str. psy62]
(469 letters)
>d1k77a_ c.1.15.5 (A:) Hypothetical protein YgbM (EC1530)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 35.4 bits (80), Expect = 0.011
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373
P + + ++ L D++GY +Y PR T
Sbjct: 212 HEPDDGEINYPWLFRLFDEVGYQGWIGCEYKPRGLT 247
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III
oxidase HemN {Escherichia coli [TaxId: 562]}
Length = 441
Score = 35.4 bits (80), Expect = 0.011
Identities = 30/192 (15%), Positives = 57/192 (29%), Gaps = 15/192 (7%)
Query: 186 CDKFCTFC---VVPYTRGIEISRSLSQVVDE----ARKLIDNGVCEITLLGQNVNAWRGK 238
C K C FC + + + + L + E A V ++ G
Sbjct: 59 CHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKA 118
Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
+ L+ L E + L L + VQ
Sbjct: 119 QIS-------RLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDF 171
Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
+ + + +NR +++ R + + D I G P +T + F T+ V ++
Sbjct: 172 NKEVQRLVNREQDEEFIFALLNHAREIGFTS-TNIDLIYGLPKQTPESFAFTLKRVAELN 230
Query: 359 YAQAFSFKYSPR 370
+ F Y+
Sbjct: 231 PDRLSVFNYAHL 242
>d1yvca1 b.40.4.12 (A:1-69) Hypothetical protein MMP0076
{Methanococcus maripaludis [TaxId: 39152]}
Length = 69
Score = 33.1 bits (76), Expect = 0.050
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
G+ EV IE G + G + R + V+ N G +I V++T VK + E V
Sbjct: 15 AGKEYEVTIEDMG-KGGDGIAR---IDGFVVFVPNAEKGSVINVKVTAVKEKFAFAERV 69
>d1yeza1 b.40.4.12 (A:1-68) Hypothetical protein MM1357
{Methanosarcina mazei [TaxId: 2209]}
Length = 68
Score = 32.0 bits (73), Expect = 0.11
Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
G++ +V I+ +G + R ++ V+ +GD +++++ V + +V
Sbjct: 13 EGEVYDVTIQDIA-RQGDGIAR---IEGFVIFVPGTKVGDEVRIKVERVLPKFAFASVV 67
>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435
{Salmonella typhimurium [TaxId: 90371]}
Length = 271
Score = 28.3 bits (62), Expect = 1.4
Identities = 15/112 (13%), Positives = 39/112 (34%), Gaps = 8/112 (7%)
Query: 265 YTTSHPRDMSDC--LIKAHGDLDV-LMPYLHLPVQSGSD-RILKSMNRRHTAYEYRQIID 320
+ S R LI+ G L+ H + ++ ++ +
Sbjct: 142 FRVSSLRSAVWAQQLIREAGSPFKVLLDTFHHHLYEEAEKEFASRIDISAIGL--VHLSG 199
Query: 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK-YSPRL 371
+ RP A++ + + + + ++ +GY ++F+ +S +L
Sbjct: 200 -VEDTRPTEALADEQRIMLSEKDVMQNYQQVQRLENMGYRGIYAFEPFSSQL 250
>d2nrac1 a.4.5.10 (C:9-151) Replication initiation protein PI
{Escherichia coli [TaxId: 562]}
Length = 143
Score = 28.3 bits (63), Expect = 1.5
Identities = 6/77 (7%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Query: 381 QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVL 440
++ ++ +L K L ++S + + + L + ++ +
Sbjct: 59 KITPSLAYRQLKEGGKLLGASKISLRGDDIIALAKELNLLSTAKNSSEELDLNIIEWIAY 118
Query: 441 NSKNHNIGDIIKVRITD 457
+ + ++ T
Sbjct: 119 SPDE----GYLSLKFTR 131
>d1uwva1 b.40.4.12 (A:15-74) rRNA (Uracil-5-)-methyltransferase
RumA, N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 60
Score = 28.0 bits (63), Expect = 1.6
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 412 QIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
QII V + G+ V R L + +V +T+ K ++V
Sbjct: 1 QIITVSVNDLD-SFGQGVAR---HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 53
>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis
[TaxId: 1423]}
Length = 278
Score = 28.0 bits (61), Expect = 1.9
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSF 365
+PG+ D A + + +IG++ S
Sbjct: 218 VWPGQGAIDLDAHLSALKEIGFSDVVSV 245
>d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes
missouriensis [TaxId: 1866]}
Length = 392
Score = 26.1 bits (57), Expect = 6.2
Identities = 15/78 (19%), Positives = 19/78 (24%), Gaps = 14/78 (17%)
Query: 334 DFIVGFPGETDDDFRATMDLVD--------KIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
D + G D LVD Y F Y P + E N
Sbjct: 255 DLVFG-----HGDLLNAFSLVDLLENGPDGAPAYDGPRHFDYKPSRTEDYDGVWESAKAN 309
Query: 386 VKA-ERLLCLQKKLREQQ 402
++ L K R
Sbjct: 310 IRMYLLLKERAKAFRADP 327
>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA
{Escherichia coli [TaxId: 562]}
Length = 518
Score = 25.7 bits (56), Expect = 8.0
Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 12/123 (9%)
Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL-----------YSLSEIKGLVR 262
+ L+ G+ I + ++N + G+D ++ F DL S SE+
Sbjct: 316 SDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRV 375
Query: 263 LRYTTSH-PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
R L +P + + R+ ++++ + Y+++ D
Sbjct: 376 NWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGEAYQKVCDE 435
Query: 322 IRS 324
+ +
Sbjct: 436 LVA 438
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.409
Gapped
Lambda K H
0.267 0.0468 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,798,373
Number of extensions: 88789
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 14
Length of query: 469
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 380
Effective length of database: 1,185,626
Effective search space: 450537880
Effective search space used: 450537880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.6 bits)