HHsearch alignment for GI: 255764473 and conserved domain: PRK12562
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional.
Probab=100.00 E-value=0 Score=662.11 Aligned_cols=302 Identities=39% Similarity=0.631 Sum_probs=282.3
Q ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88771784458999999999999999966523666544379879999428883578999989863475433332100001
Q gi|255764473|r 4 YPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQL 83 (306)
Q Consensus 4 ~~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~ 83 (306)
T Consensus 5 ~~kh~L~i~dls~~ei~~il~~A~~~k~~~~~~~~~~~L~gK~v~~lF~e~STRTR~SFE~A~~~LGg~~i~l~~~~s~~ 84 (334)
T PRK12562 5 YHKHFLKLLDFTPAELNSLLQLAAKLKADKKNGKEVARLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQI 84 (334)
T ss_pred CCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 88885771006999999999999999866645886767899989999678970479999999998599789858764527
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHC--CCCCCCCEEEECC
Q ss_conf 23210799999753001011121013200677630124412404333202467876557664200--1336773046104
Q gi|255764473|r 84 GRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHR--GSVKGKLFSWSGD 161 (306)
Q Consensus 84 ~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~--g~l~~~~i~~vGd 161 (306)
T Consensus 85 ~kgEsl~Dt~~vLs~~~D~iv~R~~~~~~~~~la~~s~vPVINg~~~~~HPtQaL~Dl~Ti~E~~~g~~l~~l~i~~vGD 164 (334)
T PRK12562 85 GHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGD 164 (334)
T ss_pred CCCCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 89988899999998607778973557389999999759998889987767179999999999984689867718999688
Q ss_pred C-CCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHH----HHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHH-
Q ss_conf 5-55543101001233125765200001321000024----32013322213664663068733222100000022013-
Q gi|255764473|r 162 G-NNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNW----ARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKA- 235 (306)
Q Consensus 162 ~-~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~- 235 (306)
T Consensus 165 ~~n~va~S~i~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~~a~~~aDvvytd~w~sm~~~~e~~ 244 (334)
T PRK12562 165 ARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDVWVSMGEPKEKW 244 (334)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCEEEEEHHHHCCCHHHHH
T ss_conf 86635799999999749869997897668888999999999997099289984688870578789864265525466778
Q ss_pred -HHHHCCCCCCCCHHHHHCC-CCCCEEECCCCC------------------CCCCCCCHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf -3310011123368899628-987299259998------------------74873576796799710686877559999
Q gi|255764473|r 236 -REEHVFQPFQVNLSLMSMA-HPDALFMHCLPA------------------HRGEEVINEVLDGPQSVVFDEAENRLHTQ 295 (306)
Q Consensus 236 -~~~~~~~~y~i~~~~l~~a-~~~~~vmHplP~------------------~rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr 295 (306)
T Consensus 245 ~e~~~~~~~y~v~~~~~~~~~~~~~~~mHclPa~r~~~~~~~~~~~~~~~~~RG~EIt~~V~d~~~S~i~~QaeNrl~vr 324 (334)
T PRK12562 245 AERIALLRDYQVNSKMMALTGNPQVKFLHCLPAFHDDQTTLGKKMAAEFGLHGGMEVTDEVFESPASIVFDQAENRMHTI 324 (334)
T ss_pred HHHHHHHHCCEECHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCCCCCEECHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99998730862259999621899919958998887322110012200257888728568885888666999987139999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999996255
Q gi|255764473|r 296 KAILLWCFGI 305 (306)
Q Consensus 296 ~AiL~~~lG~ 305 (306)
T Consensus 325 ~AvL~~~Lgk 334 (334)
T PRK12562 325 KAVMVATLAK 334 (334)
T ss_pred HHHHHHHHCC
T ss_conf 9999998575