HHsearch results for GI: 255764473 and protein with PDBid: 1vlv_A
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, JCSG, protein structure initiative, PSI; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=100.00 E-value=0 Score=635.58 Aligned_cols=299 Identities=39% Similarity=0.649 Sum_probs=280.4
Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 87717844589999999999999999665236665443798799994288835789999898634754333321000012
Q gi|255764473|r 5 PKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLG 84 (306)
Q Consensus 5 ~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~ 84 (306)
+||||+++||++++|..||++|.++|..+.+....+.|+||+++++|+|||||||+|||+|+++|||+++++++.+||++
T Consensus 19 gk~llsi~dls~~ei~~ll~~A~~lk~~~~~~~~~~~L~gk~v~~lF~epSTRTR~SFe~A~~~LGg~~i~~~~~~ss~~ 98 (325)
T 1vlv_A 19 GRSLLTLLDFSPEEIRYLLDISKQVKMENRSKLRTERFKGMTLAMIFEKRSTRTRLAFETAFAEEGGHPIFLSPNDIHLG 98 (325)
T ss_dssp TCCBSCGGGSCHHHHHHHHHHHHHHHHHHHHTCCCCTTTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTTCCTT
T ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf 99808511089999999999999997642247776457998899985689753789999999983985897466433567
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCC-C
Q ss_conf 321079999975300101112101320067763012441240433320246787655766420013367730461045-5
Q gi|255764473|r 85 RAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDG-N 163 (306)
Q Consensus 85 kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~-~ 163 (306)
||||++||++++++|+|++|+||+.++.+.++++++++|||||+++++||||+|+|+|||+|++|.++|++|+|+||. +
T Consensus 99 kgEsl~Dt~~~ls~y~D~ivvR~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaLlDl~Ti~e~~g~l~gl~i~~vGd~~~ 178 (325)
T 1vlv_A 99 AKESLEDTARVLGRMVDAIMFRGYKQETVEKLAEYSGVPVYNGLTDEFHPTQALADLMTIEENFGRLKGVKVVFMGDTRN 178 (325)
T ss_dssp TSSCHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHCSCEEESCCSSCCHHHHHHHHHHHHHHHSCSTTCEEEEESCTTS
T ss_pred CCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCC
T ss_conf 88536899999985165157740442046666650676414178887778999999999999839745677257668755
Q ss_pred CCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHH----HCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHH-HHH
Q ss_conf 55431010012331257652000013210000243----2013322213664663068733222100000022013-331
Q gi|255764473|r 164 NILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWA----RNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKA-REE 238 (306)
Q Consensus 164 ~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~----~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~-~~~ 238 (306)
++++|++.+++++|+++.+++|+++.|++...... ...+..+.+++++.++++++|+||+++|++++++... ...
T Consensus 179 ~~~~s~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aDvvyt~~~~~~~~~~~~~~~~ 258 (325)
T 1vlv_A 179 NVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVWASMGEEDKEKERM 258 (325)
T ss_dssp HHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECCCC----------CH
T ss_pred CEEEHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEECCHHHHHCCCCEEEEHHHHHHHHHHHHHHHH
T ss_conf 37531999999759849997384338888999987655442376420106999997069866401666754546668998
Q ss_pred HCCCCCCCCHHHHHC-CCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 001112336889962-89872992599987487357679679971068687755999999999962
Q gi|255764473|r 239 HVFQPFQVNLSLMSM-AHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILLWCF 303 (306)
Q Consensus 239 ~~~~~y~i~~~~l~~-a~~~~~vmHplP~~rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr~AiL~~~l 303 (306)
.++++||||.++|+. +|++++||||||+|||.||+++|+++|+|+||+||+||+|+|||||+++|
T Consensus 259 ~~~~~y~v~~~~l~~~ak~~~i~mHplP~~Rg~EI~~~V~d~~~s~i~~Qa~Ngl~vr~AlL~~lL 324 (325)
T 1vlv_A 259 ALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQSRVWDEAENRKHTIKAVMIATL 324 (325)
T ss_dssp HHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCEECHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 760375056999972189998996998489984828878569987399998725999999999986