RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764473|ref|YP_003064846.2| ornithine carbamoyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
(306 letters)
>gnl|CDD|179122 PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.
Length = 304
Score = 510 bits (1317), Expect = e-145
Identities = 173/304 (56%), Positives = 216/304 (71%), Gaps = 2/304 (0%)
Query: 2 MTYPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVS 61
M +HF L ++S L ++++A ++K + + PL GK LAMIFEKPSTRTRVS
Sbjct: 1 MLMGRHFLSLDDLSPEELEELLDLAAELKKKRKAGEPHPPLKGKTLAMIFEKPSTRTRVS 60
Query: 62 FEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYAT 121
FEV M LGG IFLS + QLGR E I DTA+VLSRYVDAI++RT H L EL EY+T
Sbjct: 61 FEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHETLEELAEYST 120
Query: 122 VPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLN 181
VPVIN LTD +HPCQI+AD++T EHRGS+KG +W GDGNN+ +SL+ AA + L
Sbjct: 121 VPVINGLTDLSHPCQILADLLTIYEHRGSLKGLKVAWVGDGNNVANSLLLAAALLGFDLR 180
Query: 182 IATPIGSEPRNEYLNW-ARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEH- 239
+ATP G EP E + A+ GAS+ + HD +AVKGA V+TD W+SM QE +A E
Sbjct: 181 VATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLK 240
Query: 240 VFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAIL 299
F P+QVN LM++A PDA+FMHCLPAHRGEEV +EV+DGPQSVV+DEAENRLH QKA+L
Sbjct: 241 AFAPYQVNEELMALAKPDAIFMHCLPAHRGEEVTDEVIDGPQSVVWDEAENRLHAQKALL 300
Query: 300 LWCF 303
W
Sbjct: 301 AWLL 304
>gnl|CDD|129743 TIGR00658, orni_carb_tr, ornithine carbamoyltransferase. Most
OTCases are homotrimers, but the homotrimers are
organized into dodecamers built from four trimers in at
least two species; the catabolic OTCase of Pseudomonas
aeruginosa is allosterically regulated, while OTCase of
the extreme thermophile Pyrococcus furiosus shows both
allostery and thermophily.
Length = 304
Score = 389 bits (1002), Expect = e-109
Identities = 152/304 (50%), Positives = 209/304 (68%), Gaps = 5/304 (1%)
Query: 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVA 65
+H L ++S + ++++AKK+K + E+K L GK LA+IFEKPSTRTRVSFEVA
Sbjct: 1 RHLLSLLDLSPEEIRYLLQLAKKLKKGKKKGKEHKKLKGKTLALIFEKPSTRTRVSFEVA 60
Query: 66 MKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVI 125
LGG ++L+ +++QLGR E+I DTA+VLSRYVD I+ R H + EL +YA+VPVI
Sbjct: 61 AYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRYVDGIMARVYKHEDVEELAKYASVPVI 120
Query: 126 NALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATP 185
N LTD HPCQ +AD++T EH G +KG + GDGNN+ +SL+ A+ + +ATP
Sbjct: 121 NGLTDLFHPCQALADLLTIIEHFGKLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATP 180
Query: 186 IGSEPRNEYLNWAR----NQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREE-HV 240
G EP + + A+ G SV L HD V+AVKGA ++TD W+SM +E K E +
Sbjct: 181 EGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKL 240
Query: 241 FQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILL 300
F+P+QVN LM +A P+ +FMHCLPAHRGEEV +EV++GP S+VFD+AENRLH QKA+++
Sbjct: 241 FRPYQVNEELMELAKPEVIFMHCLPAHRGEEVTDEVIEGPHSIVFDQAENRLHAQKAVMV 300
Query: 301 WCFG 304
G
Sbjct: 301 ALLG 304
>gnl|CDD|177976 PLN02342, PLN02342, ornithine carbamoyltransferase.
Length = 348
Score = 354 bits (909), Expect = 2e-98
Identities = 139/305 (45%), Positives = 188/305 (61%), Gaps = 7/305 (2%)
Query: 5 PKHFADLSNISSSNLSCIIEVAKKIKN---SSENIFENKPLSGKVLAMIFEKPSTRTRVS 61
PKHF + + + +++ AK++K S + F +P GK +AMIF KPS RTRVS
Sbjct: 45 PKHFLHIDDFDKEEILGLLDRAKEVKALLKSGDRSF--QPFKGKSMAMIFTKPSMRTRVS 102
Query: 62 FEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYAT 121
FE LGG ++L ++QLG+ E D A+VLSRY D I+ R H +L+L EY++
Sbjct: 103 FETGFFLLGGHALYLGPDDIQLGKREETRDIARVLSRYNDIIMARVFAHQDVLDLAEYSS 162
Query: 122 VPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLN 181
VPVIN LTD HPCQI+AD +T EH G ++G + GDGNNI+HS + AA +
Sbjct: 163 VPVINGLTDYNHPCQIMADALTIIEHIGRLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFV 222
Query: 182 IATPIGSEPRNEYLNWARNQGAS-VALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEH- 239
A P G EP + + AR G S + + +D +AVKGA V+TD W SM Q+ +A +
Sbjct: 223 CACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKK 282
Query: 240 VFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAIL 299
FQ FQVN +LM +A P A FMHCLPA RG EV + V++ P S+VF +AENR+H Q AI+
Sbjct: 283 AFQGFQVNEALMKLAGPQAYFMHCLPAERGVEVTDGVMEAPNSIVFPQAENRMHAQNAIM 342
Query: 300 LWCFG 304
L G
Sbjct: 343 LHQLG 347
>gnl|CDD|179366 PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.
Length = 331
Score = 310 bits (796), Expect = 3e-85
Identities = 123/319 (38%), Positives = 184/319 (57%), Gaps = 24/319 (7%)
Query: 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVA 65
+ F L + + + +I+++ ++K + + E++ L GK +A+IFEK STRTR +FEVA
Sbjct: 8 RSFLKLLDFTPEEIEYLIDLSIELKAAKKAGIEHQYLEGKNIALIFEKTSTRTRCAFEVA 67
Query: 66 MKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVI 125
LG +L ++ QLG+ E+I DTA+VL R D I R + EL +Y+ VPV
Sbjct: 68 AIDLGAHVTYLGPNDSQLGKKESIEDTARVLGRMYDGIEYRGFKQEIVEELAKYSGVPVW 127
Query: 126 NALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDG-NNILHSLIEGAARFNYLLNIAT 184
N LTD HP Q++AD MT +EH G +KG ++ GDG NN+ +SL+ G A+ + I
Sbjct: 128 NGLTDEWHPTQMLADFMTMKEHFGPLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICA 187
Query: 185 PIGSEPRNEYLN----WARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKARE-EH 239
P P E + A+ GA + + D +AVKGA ++TD W+SM +E + E
Sbjct: 188 PKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDVWVSMGEEDEWEERIK 247
Query: 240 VFQPFQVNLSLMSM-AHPDALFMHCLPA-----------------HRGEEVINEVLDGPQ 281
+ +P+QVN+ LM +PD +FMHCLPA +G EV +EV +
Sbjct: 248 LLKPYQVNMDLMKATGNPDVIFMHCLPAFHDTETKVGKEIAEKYGLKGLEVTDEVFESKY 307
Query: 282 SVVFDEAENRLHTQKAILL 300
S+VFDEAENR+HT KA+++
Sbjct: 308 SIVFDEAENRMHTIKAVMV 326
>gnl|CDD|179396 PRK02255, PRK02255, putrescine carbamoyltransferase; Provisional.
Length = 338
Score = 275 bits (706), Expect = 8e-75
Identities = 126/309 (40%), Positives = 176/309 (56%), Gaps = 14/309 (4%)
Query: 5 PKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEV 64
+ F D ++ + + IIE+ K+K + +N + + L K L MIFE+ STRTRVSFE
Sbjct: 3 KRDFIDTNDFTKEEILDIIELGLKLKEAIKNGYYPQLLKNKTLGMIFEQSSTRTRVSFET 62
Query: 65 AMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPV 124
AM LGG +L+ ++QLG E++ DTA+VLSR VD I+ R H ++EL +YATVPV
Sbjct: 63 AMTQLGGHAQYLAPGQIQLGGHESLEDTARVLSRLVDIIMARVDRHQTVVELAKYATVPV 122
Query: 125 INALTDNTHPCQIIADIMTFEEHRGSVKGKLFS-----WSGDGNNILHSLIEGAARFNYL 179
IN ++D HP Q + D+ T EH +GK + GD + SL+ A +
Sbjct: 123 INGMSDYNHPTQELGDLFTMIEHLP--EGKKLEDCKVVFVGDATQVCVSLMFIATKMGMD 180
Query: 180 LNIATPIGSEPRNEYLNWARN----QGASVALFHDAVQAVKGAHCVFTDTWISM-NQEFK 234
P G + E+L A G SV + D +AVK A V+TD W + + E
Sbjct: 181 FVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDVWYGLYDAELS 240
Query: 235 ARE-EHVFQP-FQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRL 292
E +F P +QV LM+ A P A FMHCLPA RGEEV +EV+D P+S+ FDEAENRL
Sbjct: 241 EEERMAIFYPKYQVTPELMAKAGPHAKFMHCLPATRGEEVTDEVMDSPRSICFDEAENRL 300
Query: 293 HTQKAILLW 301
+A+L++
Sbjct: 301 TAIRALLVY 309
>gnl|CDD|184827 PRK14805, PRK14805, ornithine carbamoyltransferase; Provisional.
Length = 302
Score = 272 bits (698), Expect = 7e-74
Identities = 118/304 (38%), Positives = 173/304 (56%), Gaps = 9/304 (2%)
Query: 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVA 65
KH + ++ L ++ +AK IK + + L+GK + M+FEKPS RTRVSF++
Sbjct: 2 KHLLSIKELTQQQLLDLLALAKTIKANPAEY--RQALAGKSVVMLFEKPSLRTRVSFDIG 59
Query: 66 MKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVI 125
+ LGG ++L LG+ E++ D A LS + DAIV R +HS + +L E+ +VPVI
Sbjct: 60 INKLGGHCLYLDQQNGALGKRESVADFAANLSCWADAIVARVFSHSTIEQLAEHGSVPVI 119
Query: 126 NALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATP 185
NAL D HPCQ +AD +T E G V ++ GDGNN+ HSL+ GAA + + P
Sbjct: 120 NALCDLYHPCQALADFLTLAEQFGDVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICP 179
Query: 186 IGSEPRNEYLN----WARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKARE-EHV 240
G P + + A G + L D ++A++G ++TDTWISM + E +
Sbjct: 180 PGHFPDGQIVAEAQELAAKSGGKLVLTSD-IEAIEGHDAIYTDTWISMGDDTPLAEIKAK 238
Query: 241 FQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILL 300
F P+QVN +LM A MHC PAHRG E+ +EV+DG S++ +AENR+H Q A+L+
Sbjct: 239 FAPYQVNKALMEKAGA-TFVMHCQPAHRGVEITSEVMDGEGSLILQQAENRMHAQNAVLV 297
Query: 301 WCFG 304
Sbjct: 298 TLLS 301
>gnl|CDD|167776 PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.
Length = 332
Score = 234 bits (598), Expect = 3e-62
Identities = 112/325 (34%), Positives = 177/325 (54%), Gaps = 26/325 (8%)
Query: 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVA 65
+ F L + + + ++++++ +K + E + L GK +A+IFEK STRTR +FEVA
Sbjct: 7 RSFLTLLDFTPKEIEYLLDLSEDLKRAKYAGIEVQKLKGKNIALIFEKDSTRTRCAFEVA 66
Query: 66 MKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVI 125
G +L + Q+G+ E+ DTA+VL D I R + + L EY+ VPV
Sbjct: 67 AYDQGAHVTYLGPTGSQMGKKESTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVW 126
Query: 126 NALTDNTHPCQIIADIMTFEEH-RGSVKGKLFSWSGDG-NNILHSLIEGAARFNYLLNIA 183
N LTD HP Q++AD +T +EH + K F++ GDG NN+ ++L++GAA ++
Sbjct: 127 NGLTDEDHPTQVLADFLTAKEHLKKPYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLV 186
Query: 184 TPIGSEPRNEYLNWARN----QGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEH 239
P P +E LN + G + + D + VKG+ ++TD W+SM + + EE
Sbjct: 187 CPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEER 246
Query: 240 V--FQPFQVNLSLMSMA-HPDALFMHCLPA-H----------------RGEEVINEVLDG 279
+ +P+QVN +M +P+A+F HCLP+ H + EV +EV +
Sbjct: 247 IKLLKPYQVNKEMMKKTGNPNAIFEHCLPSFHDLDTKVGKEIFEKYGLKEMEVTDEVFES 306
Query: 280 PQSVVFDEAENRLHTQKAILLWCFG 304
SVVFDEAENR+HT KA+++ G
Sbjct: 307 KASVVFDEAENRMHTIKAVMVATLG 331
>gnl|CDD|179587 PRK03515, PRK03515, ornithine carbamoyltransferase subunit I;
Provisional.
Length = 336
Score = 226 bits (578), Expect = 6e-60
Identities = 122/328 (37%), Positives = 180/328 (54%), Gaps = 34/328 (10%)
Query: 4 YPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFE 63
Y +HF L + + + L+ ++++A K+K +N E + L+GK +A+IFEK STRTR SFE
Sbjct: 5 YQRHFLRLLDFTPAELNSLLQLAAKLKADKKNGKEEQKLTGKNIALIFEKDSTRTRCSFE 64
Query: 64 VAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVP 123
VA G +L S Q+G E+I DTA+VL R D I R + L EYA VP
Sbjct: 65 VAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVP 124
Query: 124 VINALTDNTHPCQIIADIMTFEEHRGSVKGKLFS-----WSGDG-NNILHSLIEGAARFN 177
V N LT+ HP Q++AD++T +EH + GK F+ ++GD NN+ +SL+E AA
Sbjct: 125 VWNGLTNEFHPTQLLADLLTMQEH---LPGKAFNEMTLAYAGDARNNMGNSLLEAAALTG 181
Query: 178 YLLNIATPIGSEPRNEYL----NWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEF 233
L + P P + A+ G ++ L D + VKGA ++TD W+SM +
Sbjct: 182 LDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTDVWVSMGEPK 241
Query: 234 KAREE--HVFQPFQVNLSLMSMA-HPDALFMHCLPA------------------HRGEEV 272
+ E + +P+QVN +M + +P F+HCLPA H G EV
Sbjct: 242 EVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCLPAFHDDQTTLGKKMAEEYGLHGGMEV 301
Query: 273 INEVLDGPQSVVFDEAENRLHTQKAILL 300
+EV + S+VFD+AENRLHT KA+++
Sbjct: 302 TDEVFESAHSIVFDQAENRLHTIKAVMV 329
>gnl|CDD|105755 PRK12562, PRK12562, ornithine carbamoyltransferase subunit F;
Provisional.
Length = 334
Score = 207 bits (527), Expect = 4e-54
Identities = 122/332 (36%), Positives = 178/332 (53%), Gaps = 34/332 (10%)
Query: 4 YPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFE 63
Y KHF L + + + L+ ++++A K+K +N E L+GK +A+IFEK STRTR SFE
Sbjct: 5 YKKHFLKLLDFTPAELNSLLQLAAKLKADKKNGKEVARLTGKNIALIFEKDSTRTRCSFE 64
Query: 64 VAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVP 123
VA G +L S Q+G E+I DTA+VL R D I R + L EYA VP
Sbjct: 65 VAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAEYAGVP 124
Query: 124 VINALTDNTHPCQIIADIMTFEEHRGSVKGKLFS-----WSGDG-NNILHSLIEGAARFN 177
V N LT+ HP Q++AD++T +EH + GK F+ ++GD NN+ +S++E AA
Sbjct: 125 VWNGLTNEFHPTQLLADLLTMQEH---LPGKAFNEMTLVYAGDARNNMGNSMLEAAALTG 181
Query: 178 YLLNIATPIGSEPRN----EYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEF 233
L + P P E A+ G + L D VKGA ++TD W+SM +
Sbjct: 182 LDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDVWVSMGEPK 241
Query: 234 KAREEHV--FQPFQVNLSLMSMA-HPDALFMHCLPA------------------HRGEEV 272
+ E + + +QVN +M++ +P F+HCLPA H G EV
Sbjct: 242 EKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLPAFHDDQTTLGKKMAKEFGLHGGMEV 301
Query: 273 INEVLDGPQSVVFDEAENRLHTQKAILLWCFG 304
+EV + P S+VFD+AENR+HT KA+++
Sbjct: 302 TDEVFESPASIVFDQAENRMHTIKAVMVATLA 333
>gnl|CDD|167263 PRK01713, PRK01713, ornithine carbamoyltransferase; Provisional.
Length = 334
Score = 187 bits (477), Expect = 2e-48
Identities = 109/323 (33%), Positives = 168/323 (52%), Gaps = 28/323 (8%)
Query: 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVA 65
+H L N + + ++++++ +K + E + L GK +A+IFEK STRTR +FEVA
Sbjct: 8 RHLLSLVNHTEREIKYLLDLSRDLKRAKYAGTEQQRLKGKNIALIFEKTSTRTRCAFEVA 67
Query: 66 MKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVI 125
G ++ + Q+G E++ DTA+VL R DAI R S + EL EYA VPV
Sbjct: 68 AYDQGAQVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQSIVNELAEYAGVPVF 127
Query: 126 NALTDNTHPCQIIADIMTFEEHRGSVKGKL-FSWSGDG-NNILHSLIEGAARFNYLLNIA 183
N LTD HP Q++AD++T E+ ++ + + GD NN+ +SL+ A+ + I
Sbjct: 128 NGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRIC 187
Query: 184 TPIGSEPRNEYL----NWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEH 239
P P + +A+ GA + + D +AVKG V TD W+SM + + E
Sbjct: 188 APKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDVWVSMGEPLETWGER 247
Query: 240 V--FQPFQVNLSLMS-MAHPDALFMHCLPA-HRGE------------------EVINEVL 277
+ P+QV LM +P FMHCLPA H E EV +V
Sbjct: 248 IKLLMPYQVTPELMKRTGNPKVKFMHCLPAFHNSETKVGRQIAEKYPELANGIEVTEDVF 307
Query: 278 DGPQSVVFDEAENRLHTQKAILL 300
+ P ++ F++AENR+HT KA+++
Sbjct: 308 ESPMNIAFEQAENRMHTIKAVMV 330
>gnl|CDD|179858 PRK04523, PRK04523, N-acetylornithine carbamoyltransferase;
Reviewed.
Length = 335
Score = 186 bits (473), Expect = 8e-48
Identities = 109/346 (31%), Positives = 162/346 (46%), Gaps = 66/346 (19%)
Query: 5 PKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKP---LSGKVLAMIFEKPSTRTRVS 61
KHF + + S + L ++ A K NK L GK +A++F PS RTR S
Sbjct: 3 LKHFLNTQDWSRAELDALLTQAAAFK-------RNKLGSALKGKSIALVFFNPSLRTRTS 55
Query: 62 FEVAMKHLGGDTIFLS------------GSEMQLGRAETIGDTAKVLSRYVDAIVMRT-- 107
FE+ LGG + L G+ M E I + A+VLSRYVD I +R
Sbjct: 56 FELGAFQLGGHAVVLQPGKDAWPIEFELGAVMDGETEEHIREVARVLSRYVDLIGVRAFP 115
Query: 108 -------TNHSRLLE-LTEYATVPVINALTDNTHPCQIIADIMTFEEHRG-SVKGKLF-- 156
++L +Y+TVPVIN + THPCQ +A + +EH G +++GK +
Sbjct: 116 KFVDWSKDRQDQVLNSFAKYSTVPVIN-METITHPCQELAHALALQEHFGTTLRGKKYVL 174
Query: 157 SWSGDGNNILHSLIEGAARFNYLLNIATPIGSE-----PRNEY------LNWARN----Q 201
+W+ H A N L IAT +G + P +Y ++WA
Sbjct: 175 TWT------YHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAES 228
Query: 202 GASVALFHDAVQAVKGAHCVFTDTWISM------NQEFKAREEHVFQPFQVNLSLMSMAH 255
G S+ + HD A GA V+ +W ++ E R+++ Q F V+ M++ +
Sbjct: 229 GGSLTVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQY--QHFIVDERKMALTN 286
Query: 256 PDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILLW 301
+ +F HCLP R +V + V+D P + DEAENRLH QKAI+
Sbjct: 287 -NGVFSHCLPLRRNVKVTDAVMDSPNCIAIDEAENRLHVQKAIMAA 331
>gnl|CDD|173265 PRK14804, PRK14804, ornithine carbamoyltransferase; Provisional.
Length = 311
Score = 174 bits (442), Expect = 3e-44
Identities = 108/312 (34%), Positives = 165/312 (52%), Gaps = 21/312 (6%)
Query: 2 MTYPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVS 61
+ KH + S S + +++ A +K + N + +SG+ LAM+F+K STRTRVS
Sbjct: 3 ESNVKHLISWEDWSDSEILDLLDFAVHVKKNRVNYAGH--MSGRSLAMLFQKTSTRTRVS 60
Query: 62 FEVAMKHLGGDTIFLS--GSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEY 119
FEVAM +GG I+L S QL I A+ LSR V I+ R H LL +
Sbjct: 61 FEVAMTEMGGHGIYLDWMASNFQL---SDIDLEARYLSRNVSVIMARLKKHEDLLVMKNG 117
Query: 120 ATVPVINALTDNTHPCQIIADIMT--FEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFN 177
+ VPVIN + HPCQ +ADIMT + + K ++ G NN+++SLI A
Sbjct: 118 SQVPVINGCDNMFHPCQSLADIMTIALDSPEIPLNQKQLTYIGVHNNVVNSLIGITAALG 177
Query: 178 YLLNIATPIGSEPR--NEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMN----- 230
L + TPI ++ + + A+ +G +++ + +AV A V+TDTW+ M
Sbjct: 178 IHLTLVTPIAAKENIHAQTVERAKKKG-TLSWEMNLHKAVSHADYVYTDTWLDMEFFNDP 236
Query: 231 --QEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEA 288
+ K + + P+Q+N SLM +A MH +P H G E+ EV+ +S++F +A
Sbjct: 237 SYADKKKQRMELMMPYQINSSLME--KTNAKVMHDMPIHAGYEITREVVLSDRSIIFQQA 294
Query: 289 ENRLHTQKAILL 300
ENRL QKA++L
Sbjct: 295 ENRLDAQKAVIL 306
>gnl|CDD|179144 PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit;
Provisional.
Length = 305
Score = 162 bits (414), Expect = 9e-41
Identities = 96/319 (30%), Positives = 148/319 (46%), Gaps = 42/319 (13%)
Query: 1 MMTYPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKP-LSGKVLAMIFEKPSTRTR 59
KH + ++S + +++ A++ K + P L GK +A +F +PSTRTR
Sbjct: 1 NPLKMKHLLSIEDLSREEIELLLDTAEEFKEVLRREVKKVPLLRGKTVANLFFEPSTRTR 60
Query: 60 VSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRY-VDAIVMRTTNHS-----RL 113
+SFE+A K LG D I S S + + ET+ DT + LS DAIV+R H RL
Sbjct: 61 LSFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAMGADAIVIR---HPQSGAARL 117
Query: 114 LELTEYATVPVINALTD--NTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILH---- 167
L E + VPVINA D + HP Q + D++T E G ++G + GD I H
Sbjct: 118 --LAESSDVPVINA-GDGSHQHPTQALLDLLTIREEFGRLEGLKVAIVGD---IKHSRVA 171
Query: 168 -SLIEGAARFN---YLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFT 223
S I+ R L IA P + D + ++ A V
Sbjct: 172 RSNIQALTRLGAEVRL--IAPPT----------LLPEGMPEYGVHTDLDEVIEDADVVMM 219
Query: 224 DTWIS---MNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGP 280
+ M+ E + + + +++A PDA+ MH P +RG E+ ++V DGP
Sbjct: 220 -LRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIASDVADGP 278
Query: 281 QSVVFDEAENRLHTQKAIL 299
QSV+F++ N + + A+L
Sbjct: 279 QSVIFEQVTNGVAVRMAVL 297
>gnl|CDD|161989 TIGR00670, asp_carb_tr, aspartate carbamoyltransferase. Ornithine
carbamoyltransferases are in the same superfamily and
form an outgroup.
Length = 301
Score = 153 bits (389), Expect = 4e-38
Identities = 92/300 (30%), Positives = 144/300 (48%), Gaps = 10/300 (3%)
Query: 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVA 65
+H +S++S + +++ A++++ + + L GK+LA +F +PSTRTR+SFE A
Sbjct: 1 RHLISISDLSREEIELLLQTARELEQVLNGKEKLELLKGKILANLFFEPSTRTRLSFETA 60
Query: 66 MKHLGGDTIFLSGSE-MQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPV 124
MK LGGD + S SE + + ET+ DT K LS Y DAIV+R E + VPV
Sbjct: 61 MKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGYSDAIVIRHPLEGAARLAAEVSEVPV 120
Query: 125 INALTD--NTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNN--ILHSLIEGAARFNYLL 180
INA D N HP Q + D+ T E G + G + GD +HSL E RF +
Sbjct: 121 INA-GDGSNQHPTQTLLDLYTIYEEFGRLDGLKIALVGDLKYGRTVHSLAEALTRFGVEV 179
Query: 181 NIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHV 240
+ +P E L + +G V + + A ++ T I + E
Sbjct: 180 YLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYV-TRIQKERFPDPEEYEK 238
Query: 241 FQ-PFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAIL 299
++ + + L + A + MH LP R +E+ V D P + F +A N + + A+L
Sbjct: 239 YKGSYGITLERLEAAKKGVIIMHPLP--RVDEIDPSVDDTPHAKYFKQAFNGVPVRMALL 296
>gnl|CDD|132359 TIGR03316, ygeW, probable carbamoyltransferase YgeW. Members of
this protein family include the ygeW gene product of
Escherichia coli. The function is unknown. Members show
homology to ornithine carbamoyltransferase (TIGR00658)
and aspartate carbamoyltransferase
(carbamoyltransferase), and therefore may belong to the
carbamoyltransferases in function. Members often are
found in a large, conserved genomic region associated
with purine catabolism.
Length = 357
Score = 132 bits (334), Expect = 9e-32
Identities = 91/354 (25%), Positives = 145/354 (40%), Gaps = 57/354 (16%)
Query: 4 YPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFE 63
K F + L +++VA +K K + +F STRTR SF
Sbjct: 2 REKDFILTWEWTRDELDTVLDVAFDLKRLRALNISTKLFESGLGISLFRDNSTRTRFSFA 61
Query: 64 VAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRT-----TNHSRLLELTE 118
AM LG L + Q+G ET+ +TA+++S + D I +R ++ + E+ +
Sbjct: 62 SAMNLLGLHAQDLDEGKSQIGHGETVRETAEMISFFADGIGIRDDMYIGVGNAYMREVAK 121
Query: 119 YAT-----------VPVINALTDNTHPCQIIADIMTFEEHRGSV---KGKLF--SWS--- 159
Y P++N D HP Q +ADIMT +E G + KGK F +W+
Sbjct: 122 YVQEGYKDGVLEQRPPLVNLQCDIDHPTQAMADIMTLQEKFGGIENLKGKKFAMTWAYSP 181
Query: 160 --GDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQ----GASVALFHDAVQ 213
G ++ +I RF + +A P G E + A+ G + + +
Sbjct: 182 SYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDE 241
Query: 214 AVKGAHCVFTDTW------ISMNQEFKAREEHVFQPFQVNLSLMSMAHPD---------- 257
A K A V+ +W + + + + + L + H D
Sbjct: 242 AFKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMAL 301
Query: 258 -----ALFMHCLPAH-RG-----EEVINEVLDGPQSVVFDEAENRLHTQKAILL 300
AL+MHCLPA RG EV EV DG +SV++ EA N+ +T A++
Sbjct: 302 THDGEALYMHCLPADIRGVSCEEGEVTEEVFDGYRSVIYKEASNKPYTIAAMIA 355
>gnl|CDD|178142 PLN02527, PLN02527, aspartate carbamoyltransferase.
Length = 306
Score = 101 bits (253), Expect = 2e-22
Identities = 79/303 (26%), Positives = 136/303 (44%), Gaps = 15/303 (4%)
Query: 12 SNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGG 71
L + EVA++++ ++ L G ++A +F +PSTRTR+SFE AMK LGG
Sbjct: 7 QQFDREMLELLFEVAREMEKVERGSPGSQMLKGYLMATLFYEPSTRTRLSFESAMKRLGG 66
Query: 72 DTIFL--SGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALT 129
+ + +G + ET+ DT + + Y D IV+R A +PVINA
Sbjct: 67 EVLTTENAGEFSSAAKGETLEDTIRTVEGYSDIIVLRHFESGAARRAAATAEIPVINA-G 125
Query: 130 D--NTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNN--ILHSLIEGAARFNYL-LNIAT 184
D HP Q + D+ T + G + G GD N + SL A++ + +
Sbjct: 126 DGPGQHPTQALLDVYTIQREIGRLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVA 185
Query: 185 PIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKARE---EHVF 241
P + +++ ++ ++G D ++ ++ T I + F R E
Sbjct: 186 PDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQ-TRIQ-RERFGERIDLYEAAR 243
Query: 242 QPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILLW 301
+ V+ +M + A+ MH LP R +E+ +V P++ F +A+N L + A+L
Sbjct: 244 GKYIVDKKVMDVLPKHAVVMHPLP--RLDEITTDVDSDPRAAYFRQAKNGLFIRMALLKL 301
Query: 302 CFG 304
G
Sbjct: 302 LLG 304
>gnl|CDD|183362 PRK11891, PRK11891, aspartate carbamoyltransferase; Provisional.
Length = 429
Score = 94.5 bits (235), Expect = 3e-20
Identities = 88/289 (30%), Positives = 134/289 (46%), Gaps = 38/289 (13%)
Query: 42 LSGKVLAMIFEKPSTRTRVSFEVAMKHLGG---DTIFLSGSEMQLGRAETIGDTAKVLSR 98
L G VL +F + STRTRVSF A LGG DT + S M G E+I DT++V+S
Sbjct: 124 LEGAVLGNLFFEASTRTRVSFGAAFCRLGGSVCDTTGFTFSSMAKG--ESIYDTSRVMSG 181
Query: 99 YVDAIVMRTTNHSRLLELTEYAT---VPVINALTDNT--HPCQIIADIMTFEEHRGSVKG 153
YVDA+V+R H + E+A +PVIN D HP Q + D+ T + S G
Sbjct: 182 YVDALVIR---HPEQGSVAEFARATNLPVING-GDGPGEHPSQALLDLYTIQREF-SRLG 236
Query: 154 KLFSWSGDGNNI-----------LHSLIEGAARFNYL-LNIATPIGSEPRNEYLNWARNQ 201
K+ DG +I +HSL++ A + L + +P E +
Sbjct: 237 KIV----DGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRN 292
Query: 202 GASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQP-FQVNLSLM-SMAHPDAL 259
G + D ++GA V+ T I + F + P FQ+N +L+ ++ PD L
Sbjct: 293 GHVIEQTDDLAAGLRGADVVYA-TRIQ-KERFADESFEGYTPDFQINQALVDAVCKPDTL 350
Query: 260 FMHCLP--AHRGEEVINEVLDG-PQSVVFDEAENRLHTQKAILLWCFGI 305
MH LP + G ++ L+ P+ +F + +N + + AI G+
Sbjct: 351 IMHPLPRDSRPGANDLSTDLNRDPRLAIFRQTDNGIPVRMAIFAVLLGV 399
>gnl|CDD|169269 PRK08192, PRK08192, aspartate carbamoyltransferase; Provisional.
Length = 338
Score = 79.0 bits (195), Expect = 1e-15
Identities = 49/129 (37%), Positives = 70/129 (54%), Gaps = 8/129 (6%)
Query: 22 IIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGG---DTIFLSG 78
I VA +++ + + L G +L +F +PSTRTRVSF A LGG +T ++
Sbjct: 22 IFNVADRMEPYALREKRTRVLEGAILGNLFFEPSTRTRVSFGCAFNLLGGHVRETTGMAS 81
Query: 79 SEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTD--NTHPCQ 136
S L + E++ DTA+VLS Y D I MR + + E E + VPVIN D N HP Q
Sbjct: 82 S--SLSKGESLYDTARVLSTYSDVIAMRHPDAGSVKEFAEGSRVPVING-GDGSNEHPTQ 138
Query: 137 IIADIMTFE 145
+ D+ T +
Sbjct: 139 ALLDLFTIQ 147
>gnl|CDD|139876 PRK13814, pyrB, aspartate carbamoyltransferase catalytic subunit;
Provisional.
Length = 310
Score = 69.7 bits (170), Expect = 8e-13
Identities = 78/310 (25%), Positives = 137/310 (44%), Gaps = 22/310 (7%)
Query: 1 MMTYPKHFADLSNISSSNLSCIIEVAKKI------KNSSENIFENKPLSGKVLAMIFEKP 54
M P H ++ +++ ++ +I+ A KNS +FE L G V+A +F +P
Sbjct: 1 MNELPLHLLNMRSLTRDHIEKLIQRANYFLTQGMEKNS---VFET--LKGHVVANLFFEP 55
Query: 55 STRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRY--VDAIVMRTTNHSR 112
STRTR SFE+A K LG + + + + ET+ DT K L IV + N +
Sbjct: 56 STRTRNSFEIAAKRLGAMVLNPNLKISAISKGETLFDTIKTLEAMGVYFFIVRHSENETP 115
Query: 113 LLELTEYATVPVINALTDN-THPCQIIADIMTFEEHRGSVKGKLFSWSGD--GNNILHSL 169
+ ++ VINA N HP Q + D+MT ++H+ + GD + + +SL
Sbjct: 116 EQIAKQLSSGVVINAGDGNHQHPSQALIDLMTIKQHKPHWNKLCVTIIGDIRHSRVANSL 175
Query: 170 IEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISM 229
++G L+ + P L + S+ F + ++ + + T
Sbjct: 176 MDG------LVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVTLRLQKE 229
Query: 230 NQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAE 289
+ + F++ + A PDA+ MH P +R E+ ++V D QSV+ +
Sbjct: 230 RHDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMHPGPVNREVEINSDVADNQQSVILQQVR 289
Query: 290 NRLHTQKAIL 299
N + + A+L
Sbjct: 290 NGVAMRMAVL 299
>gnl|CDD|180878 PRK07200, PRK07200, aspartate/ornithine carbamoyltransferase family
protein; Validated.
Length = 395
Score = 64.0 bits (156), Expect = 5e-11
Identities = 70/303 (23%), Positives = 121/303 (39%), Gaps = 51/303 (16%)
Query: 15 SSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTI 74
+ L +++VA ++ E K + + +F STRTR S+ A LG +
Sbjct: 30 TPDELKAVLDVADALRALREENISTKVFNSGLGISVFRDNSTRTRFSYASACNLLGLEVQ 89
Query: 75 FLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRT-----TNHSRLLELTEY-------ATV 122
L + Q+ ET+ +TA ++S D I +R ++ + E+ +
Sbjct: 90 DLDEGKSQIAHGETVRETANMISFMADVIGIRDDMYIGKGNAYMREVGAAVDDGYKQGVL 149
Query: 123 P----VINALTDNTHPCQIIADIMTFEEHRGSV---KGK--LFSWS-----GDGNNILHS 168
P ++N D HP Q +AD++ EH G + KGK +W+ G ++
Sbjct: 150 PQRPTLVNLQCDIDHPTQSMADLLHLIEHFGGLENLKGKKIAMTWAYSPSYGKPLSVPQG 209
Query: 169 LIEGAARFNYLLNIATPIGSEPRNEYLNWARNQ----GASVALFHDAVQAVKGAHCVFTD 224
+I RF + +A P G + E + A+ G S + +A K A V+
Sbjct: 210 IIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDADIVYPK 269
Query: 225 TWI---SMNQ-----------EFKAREEHV------FQPFQVNLSLMSM-AHPDALFMHC 263
+W M + KA E+ + + + +M + AL+MHC
Sbjct: 270 SWAPYKVMEERTELYRAGDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHC 329
Query: 264 LPA 266
LPA
Sbjct: 330 LPA 332
>gnl|CDD|184012 PRK13376, pyrB, bifunctional aspartate carbamoyltransferase
catalytic subunit/aspartate carbamoyltransferase
regulatory subunit; Provisional.
Length = 525
Score = 32.8 bits (75), Expect = 0.12
Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 25/133 (18%)
Query: 28 KIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMK-HLGGDTIFLSGSEMQLGRA 86
+IK I+ +F +PSTRT+ SF A K H +
Sbjct: 45 RIKKRDVGIYI-----------VFVEPSTRTKESFINAAKFHKNVKVNIFDSEHSSFNKQ 93
Query: 87 ETIGDTAKVLSRYVDA--IVMRTT--NHSRLLE--LTEYAT-----VPV-INALT-DNTH 133
E+ DT +L+ Y D ++RT RLLE ++E+A+ VP INA + H
Sbjct: 94 ESYTDTFNMLTGYSDYSIFIVRTRLEGVCRLLEEKVSEFASRNGIEVPAFINAGDGKHEH 153
Query: 134 PCQIIADIMTFEE 146
P Q + D TF E
Sbjct: 154 PTQELLDEFTFLE 166
>gnl|CDD|184949 PRK14987, PRK14987, gluconate operon transcriptional regulator;
Provisional.
Length = 331
Score = 32.3 bits (73), Expect = 0.18
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 80 EMQLGRAETIGDTAKVLSRYVDAIVMRTTNHS-RLLELTEYATVPVINALTDNTHPCQII 138
EM+ R E++ LS +D +++ H+ R L++ E A +PV+ L D+ PC I
Sbjct: 106 EMEQERLESM------LSWNIDGLILTERTHTPRTLKMIEVAGIPVVE-LMDSQSPCLDI 158
Query: 139 A 139
A
Sbjct: 159 A 159
>gnl|CDD|149993 pfam09141, Talin_middle, Talin, middle domain. Members of this
family adopt a structure consisting of five alpha
helices that fold into a bundle. They contain a Vinculin
binding site (VBS) composed of a hydrophobic surface
spanning five turns of helix four. Activation of the VBS
causes subsequent recruitment of Vinculin, which enables
maturation of small integrin/talin complexes into more
stable adhesions. Formation of the complex between VBS
and Vinculin requires prior unfolding of this middle
domain: once released from the talin hydrophobic core,
the VBS helix is then available to induce the 'bundle
conversion' conformational change within the vinculin
head domain thereby displacing the intramolecular
interaction with the vinculin tail, allowing vinculin to
bind actin.
Length = 161
Score = 29.0 bits (65), Expect = 1.7
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 120 ATVPVINA-LTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNY 178
A V I++ L + + +++A +M E G +G+++L + + A F+
Sbjct: 85 AAVTTISSNLPEVSKGVKLLAALM---EDDG-----------NGDDLLDAARKLAGAFSD 130
Query: 179 LLNIATPIGSEPRNEYLNWARNQGAS 204
LL A P EPR LN A N G +
Sbjct: 131 LLKAAQPESKEPRQNLLNAAGNVGEA 156
>gnl|CDD|182390 PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha;
Reviewed.
Length = 1021
Score = 28.1 bits (63), Expect = 2.8
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 151 VKGKLFSWSGDGNNILHSLIEGAARFNY 178
V GKL SW +G ++L + N+
Sbjct: 740 VSGKLTSWQVNGESLLTR----EPKINF 763
>gnl|CDD|132652 TIGR03613, RutR, pyrimidine utilization regulatory protein R. This
protein is observed in operons extremely similar to that
characterized in E. coli K-12 responsible for the import
and catabolism of pyrimidines, primarily uracil. This
protein is a member of the TetR family of
transcriptional regulators defined by the N-teminal
model pfam00440 and the C-terminal model pfam08362
(YcdC-like protein, C-terminal region).
Length = 202
Score = 27.9 bits (62), Expect = 3.4
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 251 MSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDE 287
MS HP A + C+ G ++ + L GP + D
Sbjct: 94 MSRDHPQASRLFCMEMLAGAPLLMDELTGPLKALIDA 130
>gnl|CDD|162832 TIGR02389, RNA_pol_rpoA2, DNA-directed RNA polymerase, subunit A''.
This family consists of the archaeal A'' subunit of the
DNA-directed RNA polymerase. The example from
Methanocaldococcus jannaschii contains an intein.
Length = 367
Score = 27.3 bits (61), Expect = 4.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 52 EKPSTRTRVSFEVAMKHL 69
EK S R +FEV +KHL
Sbjct: 313 EKASVLARAAFEVTVKHL 330
>gnl|CDD|184867 PRK14865, rnpA, ribonuclease P; Provisional.
Length = 116
Score = 27.6 bits (61), Expect = 4.9
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 276 VLDGPQSVVFDEAENRLHTQKAILLW 301
+L + + F+EA +++HT I+L
Sbjct: 12 LLKRSEFLQFNEAASKIHTAHFIVLL 37
>gnl|CDD|162376 TIGR01467, cobI_cbiL, precorrin-2 C20-methyltransferase. This
model represents precorrin-2 C20-methyltransferase, one
of several closely related
S-adenosylmethionine-dependent methyltransferases
involved in cobalamin (vitamin B12) biosynthesis.
Length = 230
Score = 27.3 bits (61), Expect = 5.6
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 264 LPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAIL 299
LPA GE + + L +VV + L K L
Sbjct: 151 LPATAGEAELEKALAEFDTVVLMKVGRNLPQIKEAL 186
>gnl|CDD|148020 pfam06165, Glyco_transf_36, Glycosyltransferase family 36. The
glycosyltransferase family 36 includes cellobiose
phosphorylase (EC:2.4.1.20), cellodextrin phosphorylase
(EC:2.4.1.49), chitobiose phosphorylase (EC:2.4.1.-).
Many members of this family contain two copies of this
domain.
Length = 110
Score = 27.1 bits (61), Expect = 5.8
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 108 TNHS---RLLELTEYATVPVINALTDNTHP 134
TN S R LELT YA + NA D HP
Sbjct: 72 TNTSGRPRRLELTSYAEWVLGNARADTAHP 101
>gnl|CDD|184891 PRK14897, PRK14897, unknown domain/DNA-directed RNA polymerase
subunit A'' fusion protein; Provisional.
Length = 509
Score = 26.7 bits (59), Expect = 8.0
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 48 AMIFEKPSTRTRVSFEVAMKH--LGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVM 105
A+I E T V ++H L D + GS +GR G+ + VL+R A
Sbjct: 404 AIIHEAKRTLQEQGLNVDIRHIMLVADMMTFDGSVKAIGRHGISGEKSSVLAR---AAFE 460
Query: 106 RTTNH 110
T H
Sbjct: 461 ITGKH 465
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.133 0.396
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,858,582
Number of extensions: 301108
Number of successful extensions: 649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 37
Length of query: 306
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 213
Effective length of database: 3,984,929
Effective search space: 848789877
Effective search space used: 848789877
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)