RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|255764473|ref|YP_003064846.2| ornithine carbamoyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
(306 letters)
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A
{Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB:
1ort_A
Length = 335
Score = 321 bits (824), Expect = 1e-88
Identities = 111/329 (33%), Positives = 174/329 (52%), Gaps = 28/329 (8%)
Query: 4 YPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFE 63
+ ++ L + S+ L ++++++ +K + E + L K +A+IFEK STRTR +FE
Sbjct: 5 HNRNLLSLMHHSTRELRYLLDLSRDLKRAKYTGTEQQHLKRKNIALIFEKTSTRTRCAFE 64
Query: 64 VAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVP 123
VA G + ++ + Q+G E++ DTA+VL R DAI R + EL ++A VP
Sbjct: 65 VAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAKFAGVP 124
Query: 124 VINALTDNTHPCQIIADIMTFEEHRG-SVKGKLFSWSGDG-NNILHSLIEGAARFNYLLN 181
V N LTD HP Q++AD++T EH + +++ GD NN+ +SL+ A+ +
Sbjct: 125 VFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVR 184
Query: 182 IATPIGSEPRNEYLNWARNQ----GASVALFHDAVQAVKGAHCVFTDTWISMNQEFKARE 237
IA P P +E++ + GA + L D +AVKG V TD W+SM + +A
Sbjct: 185 IAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWG 244
Query: 238 E--HVFQPFQVNLSLM-SMAHPDALFMHCLPAH-------------------RGEEVINE 275
E P+QVN+ +M + +P A FMHCLPA G EV +
Sbjct: 245 ERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIAEQYPNLANGIEVTED 304
Query: 276 VLDGPQSVVFDEAENRLHTQKAILLWCFG 304
V + P ++ F++AENR+HT KAIL+
Sbjct: 305 VFESPYNIAFEQAENRMHTIKAILVSTLA 333
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A
{Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB:
1a1s_A
Length = 315
Score = 320 bits (820), Expect = 3e-88
Identities = 153/311 (49%), Positives = 203/311 (65%), Gaps = 7/311 (2%)
Query: 1 MMT--YPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRT 58
M+ + L + ++ + I+E AK K + ++ L GK LAMIF+KPSTRT
Sbjct: 1 MVVSLAGRDLLCLQDYTAEEIWTILETAKMFKIWQKIGKPHRLLEGKTLAMIFQKPSTRT 60
Query: 59 RVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTE 118
RVSFEVAM HLGG ++L+ ++QL R ETI DTA+VLSRYVDAI+ R +H + +L +
Sbjct: 61 RVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAK 120
Query: 119 YATVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNY 178
YATVPVIN L+D +HPCQ +AD MT E +G++KG + GDGNN+ HSL+ +
Sbjct: 121 YATVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVAHSLMIAGTKLGA 180
Query: 179 LLNIATPIGSEPRNEYLNWARN----QGASVALFHDAVQAVKGAHCVFTDTWISMNQEFK 234
+ +ATP G EP + + WA G S L HD V+AVK A ++TD W SM QE +
Sbjct: 181 DVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVWASMGQEAE 240
Query: 235 AREEH-VFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLH 293
A E +F+PFQVN L+ A PD +FMHCLPAHRGEEV ++V+D P SVV+D+AENRLH
Sbjct: 241 AEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPNSVVWDQAENRLH 300
Query: 294 TQKAILLWCFG 304
QKA+L G
Sbjct: 301 AQKAVLALVMG 311
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase;
2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1
PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Length = 324
Score = 277 bits (710), Expect = 2e-75
Identities = 76/324 (23%), Positives = 134/324 (41%), Gaps = 39/324 (12%)
Query: 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVA 65
K F + +I +L + + +IK + + K L MIF S RTR+S + A
Sbjct: 2 KKFTCVQDIG--DLKSALAESFEIKK--DRFKYVELGRNKTLLMIFFNSSLRTRLSTQKA 57
Query: 66 MKHLGGDTIFLS------------GSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSR- 112
+LG + I L G M + E + + V+ Y D I +R+
Sbjct: 58 ALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFEN 117
Query: 113 ---------LLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGN 163
+ + +++ PV + HP Q AD++T EE++ + + K+
Sbjct: 118 REYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHP 177
Query: 164 NIL-----HSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGA 218
L +S E +Y I P G E +++ AR + +D ++A +GA
Sbjct: 178 RPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNAR-------VEYDQMKAFEGA 230
Query: 219 HCVFTDTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLD 278
++ W + + + + + V M++ +A FMHCLP R V ++V++
Sbjct: 231 DFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVT-NNAYFMHCLPVRRNMIVTDDVIE 289
Query: 279 GPQSVVFDEAENRLHTQKAILLWC 302
PQS+V EA NR + +L
Sbjct: 290 SPQSIVIPEAANREISATVVLKRL 313
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A
{Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A
1fvo_A 1c9y_A* 1fb5_A
Length = 321
Score = 273 bits (700), Expect = 3e-74
Identities = 122/305 (40%), Positives = 173/305 (56%), Gaps = 7/305 (2%)
Query: 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKP-LSGKVLAMIFEKPSTRTRVSFEV 64
+ L N + + ++ ++ +K + E P L GK L MIFEK STRTR+S E
Sbjct: 7 RDLLTLKNFTGEEIKYMLWLSADLKFRIKQKGEYLPLLQGKSLGMIFEKRSTRTRLSTET 66
Query: 65 AMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPV 124
LGG FL+ ++ LG E++ DTA+VLS DA++ R S L L + A++P+
Sbjct: 67 GFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQSDLDTLAKEASIPI 126
Query: 125 INALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIAT 184
IN L+D HP QI+AD +T +EH S+KG SW GDGNNILHS++ AA+F L AT
Sbjct: 127 INGLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAAT 186
Query: 185 PIGSEPRNEYL----NWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQE-FKAREEH 239
P G EP +A+ G + L +D ++A G + + TDTWISM +E K +
Sbjct: 187 PKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQ 246
Query: 240 VFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAIL 299
FQ +QV + +A D F+HCLP + EEV +EV P+S+VF EAENR T A++
Sbjct: 247 AFQGYQVTMKTAKVAASDWTFLHCLP-RKPEEVDDEVFYSPRSLVFPEAENRKWTIMAVM 305
Query: 300 LWCFG 304
+
Sbjct: 306 VSLLT 310
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase,
arginine degradation pathway, giardia lamblia, drug
target; 2.00A {Giardia intestinalis}
Length = 328
Score = 267 bits (684), Expect = 2e-72
Identities = 106/318 (33%), Positives = 159/318 (50%), Gaps = 21/318 (6%)
Query: 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVA 65
+H +S + L+ +I+ A +K + + K L F KPS RTRVS E A
Sbjct: 8 RHLLTISALCPKELAYLIDRALDMKKNPAK--YTARAANKTLLAFFAKPSLRTRVSLETA 65
Query: 66 MKHLGGDTIFL-SGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPV 124
M LGG I+ G+ +G ET+ DTA+V SR VD R + E+ ++A+VP
Sbjct: 66 MTRLGGHAIYYELGANSNVGGKETVQDTAEVFSRMVDICTARLATKEMMREMAQHASVPC 125
Query: 125 INALTDNTHPCQIIADIMTFEEHRGSVKG--------KLFSWSGDGNNILHSLIEGAARF 176
INAL D HP Q++ D MT +E + K NN+ + L+ G A
Sbjct: 126 INALDDFGHPLQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCGDSMNNVTYDLMRGCALL 185
Query: 177 NYLLNIATPIGS--EPRNEYLNWAR------NQGASVALFHDAVQAVKGAHCVFTDTWIS 228
++ P +P E ++ G S+ +FHD + +G V+TD+W+S
Sbjct: 186 GMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDVVYTDSWMS 245
Query: 229 MNQ--EFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFD 286
+ E K V PFQV+ ++M++ ++FM+CLPA RGEE V+DGP+SV +D
Sbjct: 246 YHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLPATRGEEQTASVIDGPKSVCYD 305
Query: 287 EAENRLHTQKAILLWCFG 304
EA NRLH+ A+L +
Sbjct: 306 EAGNRLHSAMAVLDFFLH 323
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor
complex, transferase; HET: PAL; 1.80A {Pyrococcus
abyssi} SCOP: c.78.1.1 c.78.1.1
Length = 308
Score = 264 bits (675), Expect = 2e-71
Identities = 81/310 (26%), Positives = 137/310 (44%), Gaps = 7/310 (2%)
Query: 2 MTYP-KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRV 60
M + + + + S ++ ++ A++++ + + + GK+LA +F +PSTRTR+
Sbjct: 1 MDWKGRDVISIRDFSKEDIETVLATAERLERELKEKGQLEYAKGKILATLFFEPSTRTRL 60
Query: 61 SFEVAMKHLGGDTI-FLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEY 119
SFE AM LGG I F S + + E++ DT K + +Y D IV+R E
Sbjct: 61 SFESAMHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQYCDVIVIRHPKEGAARLAAEV 120
Query: 120 ATVPVINA-LTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGN--NILHSLIEGAARF 176
A VPVINA N HP Q + D+ T ++ G + G GD +HSL E +
Sbjct: 121 AEVPVINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFY 180
Query: 177 NYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAR 236
+ L + +P + R +G V + ++ +
Sbjct: 181 DVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFPDEQE 240
Query: 237 EEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQK 296
V +QVNL ++ A + MH LP R +E+ EV + ++ F + N + +
Sbjct: 241 YLKVKGSYQVNLKVLEKAKDELRIMHPLP--RVDEIHPEVDNTKHAIYFRQVFNGVPVRM 298
Query: 297 AILLWCFGII 306
A+L G+I
Sbjct: 299 ALLALVLGVI 308
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal
cavity, hydrolase, metal- binding, pyrimidine
biosynthesis, zinc; HET: FLC; 2.30A {Aquifex aeolicus}
Length = 291
Score = 261 bits (669), Expect = 1e-70
Identities = 69/305 (22%), Positives = 124/305 (40%), Gaps = 23/305 (7%)
Query: 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVA 65
+ +++ + I++ AK+ K + + F +PSTRTR+SFE A
Sbjct: 2 RSLISSLDLTREEVEEILKYAKEFKEG------KEETIKASAVLFFSEPSTRTRLSFEKA 55
Query: 66 MKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRY-VDAIVMRTTNHSRL-LELTEYATVP 123
+ LG +T +SGSE + E+ DT K D +V R E+ + +
Sbjct: 56 ARELGIETYLVSGSESSTVKGESFFDTLKTFEGLGFDYVVFRVPFVFFPYKEIVKSLNLR 115
Query: 124 VINALTDN-THPCQIIADIMTFEEHRGSVKGKLFSWSGDG--NNILHSLIEGAARFNYLL 180
++NA HP Q + D T +EH G VK + GD + + S F +
Sbjct: 116 LVNAGDGTHQHPSQGLIDFFTIKEHFGEVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKI 175
Query: 181 NIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQ--EFKAREE 238
+ P PR+ + V +F D + + A V Q + E
Sbjct: 176 GVCGPKTLIPRDV-------EVFKVDVFDDVDKGIDWADVVIWLRLQKERQKENYIPSES 228
Query: 239 HVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAI 298
F+ F + L+MH P +R ++ +E++ +S++ ++ +N + +KAI
Sbjct: 229 SYFKQFGLTKERFE---KVKLYMHPGPVNRNVDIDHELVYTEKSLIQEQVKNGIPVRKAI 285
Query: 299 LLWCF 303
+ +
Sbjct: 286 YKFLW 290
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET:
AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A
1yh1_A* 1zq8_A* 2g6a_A* 2g65_A* 2g6c_A* 2g68_A*
Length = 359
Score = 258 bits (660), Expect = 1e-69
Identities = 99/338 (29%), Positives = 149/338 (44%), Gaps = 45/338 (13%)
Query: 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVA 65
KHF + + S + L ++ A K + L GK +A++F PS RTR SFE+
Sbjct: 24 KHFLNTQDWSRAELDALLTQAALFKRNKLG----SELKGKSIALVFFNPSMRTRTSFELG 79
Query: 66 MKHLGGDTIFLS------------GSEMQLGRAETIGDTAKVLSRYVDAIVMRT------ 107
LGG + L G+ M E I + A+VL RYVD I +R
Sbjct: 80 AFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVARVLGRYVDLIGVRAFPKFVD 139
Query: 108 ----TNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGS--VKGKLFSWSGD 161
L +Y+ VPVIN THPCQ +A + +EH G+ ++GK + +
Sbjct: 140 WSKDREDQVLKSFAKYSPVPVINM-ETITHPCQELAHALALQEHFGTPDLRGKKYVLTWT 198
Query: 162 ------GNNILHSLIEGAARFNYLLNIATPIGS-EPRNEYLNWARNQGA----SVALFHD 210
+ +S + A R + + P Y++WA A S+ + HD
Sbjct: 199 YHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHD 258
Query: 211 AVQAVKGAHCVFTDTWISM----NQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPA 266
A GA V+ +W ++ N E + +Q F V+ M++ + +F HCLP
Sbjct: 259 IDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALT-NNGVFSHCLPL 317
Query: 267 HRGEEVINEVLDGPQSVVFDEAENRLHTQKAILLWCFG 304
R + + V+D P + DEAENRLH QKAI+ G
Sbjct: 318 RRNVKATDAVMDSPNCIAIDEAENRLHVQKAIMAALVG 355
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics,
NYSGXRC, target 9454P, operon, amino-acid biosynthesis;
2.10A {Gloeobacter violaceus pcc 7421}
Length = 323
Score = 251 bits (642), Expect = 1e-67
Identities = 131/306 (42%), Positives = 188/306 (61%), Gaps = 9/306 (2%)
Query: 4 YPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFE 63
+ L ++ + L ++ +A ++K L GKVL ++F K STRTRVSF
Sbjct: 12 FRPDLLSLDDLDEAQLHALLTLAHQLKRGERV----ANLHGKVLGLVFLKASTRTRVSFT 67
Query: 64 VAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVP 123
VAM LGG I LS S Q+GR E + DTA+VL RYVD + +RT + L E YA +P
Sbjct: 68 VAMYQLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAGIP 127
Query: 124 VINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIA 183
VINALTD+ HPCQ++AD++T E+ G + G ++ GDGNN+ HSL+ G A+ + +A
Sbjct: 128 VINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVA 187
Query: 184 TPIGSEPRNEYLNWAR----NQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEH 239
TP G P A GA V + D +A +GAH ++TD W SM QE + +
Sbjct: 188 TPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWTSMGQEAETQHRL 247
Query: 240 -VFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAI 298
+F+ +Q+N +L++ A +A+ +HCLPAHRGEE+ +EV++GP+S ++DEAENRLH QKA+
Sbjct: 248 QLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAV 307
Query: 299 LLWCFG 304
L G
Sbjct: 308 LAALMG 313
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal
binding-site, hexamer, cytoplasm, arginine metabolism;
2.10A {Lactobacillus hilgardii}
Length = 359
Score = 247 bits (631), Expect = 2e-66
Identities = 102/326 (31%), Positives = 153/326 (46%), Gaps = 25/326 (7%)
Query: 4 YPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFE 63
+ + S++ L +I+ +K + + L GK +A++FEK STRTR +F
Sbjct: 27 QGRSVLAEKDFSAAELEYLIDFGLHLKALKKAGIPHHYLEGKNIALLFEKSSTRTRSAFT 86
Query: 64 VAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVP 123
A LG +L +++QLG+ E+ DTAKVL D I R S L + VP
Sbjct: 87 TASIDLGAHPEYLGQNDIQLGKKESTSDTAKVLGSMFDGIEFRGFKQSDAEILARDSGVP 146
Query: 124 VINALTDNTHPCQIIADIMTFEEHRGSVKG-KLFSWSGDGNNILHSLIEGAARFNYLLNI 182
V N LTD HP Q++AD MT +E+ G ++G L NN+ +SL+ A ++I
Sbjct: 147 VWNGLTDEWHPTQMLADFMTVKENFGKLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHI 206
Query: 183 ATPIGSEPRNEYLNWARNQ----GASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREE 238
P P E N A+ GA + + D + +KG++ V+TD W+SM +
Sbjct: 207 VAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDVWVSMGESNWEERV 266
Query: 239 HVFQPFQVNLSLMSM---AHPDALFMHCLPAHRGE-----------------EVINEVLD 278
P+QVN+ M +FMHCLPA EV +EV
Sbjct: 267 KELTPYQVNMEAMKKTGTPDDQLIFMHCLPAFHNTDTQYGKEIKEKYGITEMEVTDEVFT 326
Query: 279 GPQSVVFDEAENRLHTQKAILLWCFG 304
+ F+EAENR+H+ KA++ G
Sbjct: 327 SKYARQFEEAENRMHSIKAMMAATLG 352
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius}
SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Length = 299
Score = 242 bits (617), Expect = 1e-64
Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 12/304 (3%)
Query: 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVA 65
KH N S L I + K + + K LSGK +++ F +PSTRT +SF+ A
Sbjct: 2 KHIISAYNFSRDELEDIFALTDKYSKNLND--TRKILSGKTISIAFFEPSTRTYLSFQKA 59
Query: 66 MKHLGGDTIFLSGSE-MQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPV 124
+ +LGGD I SG E + + E + DT ++L+ Y D IVMR +E + +PV
Sbjct: 60 IINLGGDVIGFSGEESTSVAKGENLADTIRMLNNYSDGIVMRHKYDGASRFASEISDIPV 119
Query: 125 INALT-DNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNIL--HSLIEGAARFNY-LL 180
INA + HP Q + DI T +H ++ G +F+ GD +SL+ RF L+
Sbjct: 120 INAGDGKHEHPTQAVIDIYTINKHFNTIDGLVFALLGDLKYARTVNSLLRILTRFRPKLV 179
Query: 181 NIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHV 240
+ +P R E L+ V + + + ++ + E +
Sbjct: 180 YLISPQLLRARKEILDEL---NYPVKEVENPFEVINEVDVLYVTRIQKERFVDEMEYEKI 236
Query: 241 FQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILL 300
+ V+L L + D++ +H LP R E+ +V ++ F++A + + +IL
Sbjct: 237 KGSYIVSLDLANKMKKDSIILHPLP--RVNEIDRKVDKTTKAKYFEQASYGVPVRMSILT 294
Query: 301 WCFG 304
+G
Sbjct: 295 KIYG 298
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.00A {Thermus thermophilus HB8}
Length = 301
Score = 239 bits (609), Expect = 9e-64
Identities = 127/302 (42%), Positives = 177/302 (58%), Gaps = 9/302 (2%)
Query: 2 MTYPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVS 61
+T PK D S L ++++A+++K + + L GKVLA++FEKPS RTR +
Sbjct: 6 LTLPKDLLDFSGYGPKELQALLDLAEQLKR---ERYRGEDLKGKVLALLFEKPSLRTRTT 62
Query: 62 FEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYAT 121
EVAM HLGG ++L ++ +G E + D AK L R+V+ I R H + L +A
Sbjct: 63 LEVAMVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAARVFRHETVEALARHAK 122
Query: 122 VPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLN 181
VPV+NAL+D HP Q +AD++T +E G + G +W GDGNN+L+SL+E A +
Sbjct: 123 VPVVNALSDRAHPLQALADLLTLKEVFGGLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVR 182
Query: 182 IATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQ-EFKAREEHV 240
+ATP G EP L A HD +A GAH ++TD W SM Q + +
Sbjct: 183 VATPKGYEPDPGLLKRANAFF-----THDPKEAALGAHALYTDVWTSMGQEAEREKRLRD 237
Query: 241 FQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILL 300
FQ FQVN L+ + P+ +F+HCLPAH GEE E + GP+S VFD+AENRLHT KA+LL
Sbjct: 238 FQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEEAVHGPRSRVFDQAENRLHTAKAVLL 297
Query: 301 WC 302
Sbjct: 298 TL 299
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography,
ornithine carbamyoltransferase, carbamoyl phosphate, L-
norvaline; 2.20A {Mycobacterium tuberculosis} PDB:
2p2g_A
Length = 307
Score = 232 bits (591), Expect = 1e-61
Identities = 132/310 (42%), Positives = 187/310 (60%), Gaps = 11/310 (3%)
Query: 1 MMTYPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRV 60
++ +HF ++S + + ++E+A ++K + + + +A+IF+K STRTR
Sbjct: 1 VI---RHFLRDDDLSPAEQAEVLELAAELKK--DPVSRRPLQGPRGVAVIFDKNSTRTRF 55
Query: 61 SFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYA 120
SFE+ + LGG + + QLGR ET+ DTAKVLSRYVDAIV RT RL + A
Sbjct: 56 SFELGIAQLGGHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWRTFGQERLDAMASVA 115
Query: 121 TVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGD-GNNILHSLIEGAARFNYL 179
TVPVINAL+D HPCQ++AD+ T E +G+++G S+ GD NN+ HSL+ G
Sbjct: 116 TVPVINALSDEFHPCQVLADLQTIAERKGALRGLRLSYFGDGANNMAHSLLLGGVTAGIH 175
Query: 180 LNIATPIGSEPRNEYLNWA----RNQGASVALFHDAVQAVKGAHCVFTDTWISMNQ-EFK 234
+ +A P G P A ++ GASV + DA A GA + TDTW SM Q
Sbjct: 176 VTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDTWTSMGQENDG 235
Query: 235 AREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHT 294
F+PFQ+N L+++A DA+ +HCLPAHRG+E+ + V+DGP S V+DEAENRLH
Sbjct: 236 LDRVKPFRPFQLNSRLLALADSDAIVLHCLPAHRGDEITDAVMDGPASAVWDEAENRLHA 295
Query: 295 QKAILLWCFG 304
QKA+L+W
Sbjct: 296 QKALLVWLLE 305
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural
genomics, JCSG, protein structure initiative, PSI; 2.25A
{Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Length = 325
Score = 223 bits (569), Expect = 3e-59
Identities = 115/304 (37%), Positives = 173/304 (56%), Gaps = 7/304 (2%)
Query: 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVA 65
+ L + S + +++++K++K + + + G LAMIFEK STRTR++FE A
Sbjct: 20 RSLLTLLDFSPEEIRYLLDISKQVKMENRSKLRTERFKGMTLAMIFEKRSTRTRLAFETA 79
Query: 66 MKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVI 125
GG IFLS +++ LG E++ DTA+VL R VDAI+ R + +L EY+ VPV
Sbjct: 80 FAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYKQETVEKLAEYSGVPVY 139
Query: 126 NALTDNTHPCQIIADIMTFEEHRGSV-KGKLFSWSGDGNNILHSLIEGAARFNYLLNIAT 184
N LTD HP Q +AD+MT EE+ G + K+ NN+ SL+ A+
Sbjct: 140 NGLTDEFHPTQALADLMTIEENFGRLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACG 199
Query: 185 PIGSEPRNEYLNWA----RNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKARE-EH 239
P +PR++ + SV+ + +A+ GA V+TD W SM +E K +E
Sbjct: 200 PEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVWASMGEEDKEKERMA 259
Query: 240 VFQPFQVNLSLMSM-AHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAI 298
+ +P+QVN +M M + +FMHCLPA +G+EV EV++G QS V+DEAENR HT KA+
Sbjct: 260 LLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQSRVWDEAENRKHTIKAV 319
Query: 299 LLWC 302
++
Sbjct: 320 MIAT 323
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex;
HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1
c.78.1.1 PDB: 1akm_A* 2otc_A*
Length = 333
Score = 208 bits (529), Expect = 2e-54
Identities = 114/329 (34%), Positives = 171/329 (51%), Gaps = 28/329 (8%)
Query: 4 YPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFE 63
Y KHF L + + + L+ ++++A K+K ++ E L+GK +A+IFEK STRTR SFE
Sbjct: 4 YHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFE 63
Query: 64 VAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVP 123
VA G +L S Q+G E+I DTA+VL R D I R + L EYA+VP
Sbjct: 64 VAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYASVP 123
Query: 124 VINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGN---NILHSLIEGAARFNYLL 180
V N LT+ HP Q++AD++T +EH + G+ N+ +S++E AA L
Sbjct: 124 VWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDL 183
Query: 181 NIATPIGSEPRNEYLNWAR----NQGASVALFHDAVQAVKGAHCVFTDTWISMN--QEFK 234
+ P P + R G ++ L D + V+GA ++TD W+SM +E
Sbjct: 184 RLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKW 243
Query: 235 AREEHVFQPFQVNLSLMS-MAHPDALFMHCLPA------------------HRGEEVINE 275
A + + +QVN +M +P+ F+HCLPA H G EV +E
Sbjct: 244 AERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDE 303
Query: 276 VLDGPQSVVFDEAENRLHTQKAILLWCFG 304
V + S+VFD+AENR+HT KA+++
Sbjct: 304 VFESAASIVFDQAENRMHTIKAVMVATLS 332
>2at2_A Aspartate carbamoyltransferase; 3.00A {Bacillus subtilis} SCOP:
c.78.1.1 c.78.1.1
Length = 300
Score = 203 bits (516), Expect = 5e-53
Identities = 69/301 (22%), Positives = 129/301 (42%), Gaps = 14/301 (4%)
Query: 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVA 65
KH +S +S+ + +++ A+++K+ + L+GK A +F +PSTRTR SFEVA
Sbjct: 2 KHLTTMSELSTEEIKDLLQTAQELKSGKTD----NQLTGKFAANLFFEPSTRTRFSFEVA 57
Query: 66 MKHLGGDTIFLSGSEMQLGRAET-IGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPV 124
K LG + + L G+ + + ET + S VD V+R + EL +P+
Sbjct: 58 EKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDEYYEELVSQVNIPI 117
Query: 125 INA-LTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIA 183
+NA HP Q + D+MT E + KG S GD + + +
Sbjct: 118 LNAGDGCGQHPTQSLLDLMTIYEEFNTFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVL 177
Query: 184 TPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQP 243
SE ++E + + +AV+ + V + + +E
Sbjct: 178 FSGPSEWQDEENTFGT--------YVSMDEAVESSDVVMLLRIQNERHQSAVSQEGYLNK 229
Query: 244 FQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILLWCF 303
+ + + A+ MH P +RG E+ + +++ +S +F + +N + + A++
Sbjct: 230 YGLTVERAERMKRHAIIMHPAPVNRGVEIDDSLVESEKSRIFKQMKNGVFIRMAVIQCAL 289
Query: 304 G 304
Sbjct: 290 Q 290
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P;
1.88A {Escherichia coli K12} SCOP: c.78.1.1 c.78.1.1
PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A*
1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A*
1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A
...
Length = 310
Score = 199 bits (506), Expect = 8e-52
Identities = 83/308 (26%), Positives = 141/308 (45%), Gaps = 14/308 (4%)
Query: 4 YPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFE 63
Y KH ++++S +L+ ++ A K+K + + + L KV+A F + STRTR+SFE
Sbjct: 5 YQKHIISINDLSRDDLNLVLATAAKLKANPQP----ELLKHKVIASCFFEASTRTRLSFE 60
Query: 64 VAMKHLGGDTIFLSGSEM--QLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYA- 120
+M LG + S S + ET+ DT V+S YVDAIVMR TE++
Sbjct: 61 TSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSG 120
Query: 121 TVPVINALTDNT-HPCQIIADIMTFEEHRGSVKGKLFSWSGDG--NNILHSLIEGAARF- 176
VPV+NA + HP Q + D+ T +E +G + + GD +HSL + A+F
Sbjct: 121 NVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFD 180
Query: 177 NYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAR 236
P L+ +G + + H +++ V + T + + +
Sbjct: 181 GNRFYFIAPDALAMPQYILDMLDEKGIAWS-LHSSIEEVMAEVDILYMTRVQKERLDPSE 239
Query: 237 EEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQK 296
+V F + S + A + +H LP R +E+ +V P + F +A N + ++
Sbjct: 240 YANVKAQFVLRASDLHNAKANMKVLHPLP--RVDEIATDVDKTPHAWYFQQAGNGIFARQ 297
Query: 297 AILLWCFG 304
A+L
Sbjct: 298 ALLALVLN 305
>2rgw_A Aspartate carbamoyltransferase; aspartate transcarbamoylase,
pyrimidine biosynthesis, thermostability; 2.80A
{Methanococcus jannaschii} PDB: 3e2p_A
Length = 306
Score = 184 bits (468), Expect = 2e-47
Identities = 71/304 (23%), Positives = 124/304 (40%), Gaps = 9/304 (2%)
Query: 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVA 65
KH + +I + I++ A+K++ K L GK+LA +F +PSTRTR+SFE A
Sbjct: 2 KHLISMKDIGKEEILEILDEARKMEELLNTKRPLKLLEGKILATVFYEPSTRTRLSFETA 61
Query: 66 MKHLGGDTIFLSGSEMQLGRAETIGDTA-KVLSRYVDAIVMRTTNHSRLLELTEYATVPV 124
MK LGG+ I ++ + +V+S Y D IV+R + +EY+ VP+
Sbjct: 62 MKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPI 121
Query: 125 INALTDNT-HPCQIIADIMTFEEHRGSVKGKLFSWSGD---GNNILHSLIEGAARFNYLL 180
INA + HP Q + D+ T G + G ++ GD G + + + N +
Sbjct: 122 INAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEM 181
Query: 181 NIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHV 240
+P + + + + ++ E V
Sbjct: 182 YFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKV 241
Query: 241 FQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILL 300
+++ + + MH LP R +E+ +V D PQ+ F ++ + + AIL
Sbjct: 242 KGSYKIKREY--VEGKKFIIMHPLP--RVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILK 297
Query: 301 WCFG 304
Sbjct: 298 KLIE 301
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 57.6 bits (139), Expect = 4e-09
Identities = 61/373 (16%), Positives = 120/373 (32%), Gaps = 126/373 (33%)
Query: 32 SSENIFENKPLS---------GKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQ 82
+ +++P + G V +++ + + + + +L G+++
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF--ENCYLEGNDIH 102
Query: 83 ------LGRAET-IGDTAKVLSRYVDAIVM----RTTNH-SRLL---------------- 114
L +T + T +++ Y+ A +M S L
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 115 ---------ELTE-YATV-PVINALTDNTHPC--QIIADIMTFEEHRGSVKG-KLFSWSG 160
EL + Y T ++ L + ++I + E+ +G + W
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT--QGLNILEW-- 218
Query: 161 DGNNILHSLIEGAARFNYLLN--IATPI----------------GSEPR--NEYLNWA-- 198
L + +YLL+ I+ P+ G P YL A
Sbjct: 219 -----LENP-SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 199 RNQGASVAL----------FHD-AVQAVK-----GAHC--VFTDTWI--SMNQEFKAREE 238
+QG A+ F +A+ G C + +T + S+ ++ E
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 239 HVFQPFQVNLSL--MSMA----HPDALFMHCLPAHRGEEV--INE----VLDGP-QSVV- 284
V P LS+ ++ + + H LPA + E+ +N V+ GP QS+
Sbjct: 333 GVPSPM---LSISNLTQEQVQDYVNKTNSH-LPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 285 FDEAENRLHTQKA 297
+ L KA
Sbjct: 389 LN---LTLRKAKA 398
Score = 31.8 bits (72), Expect = 0.17
Identities = 38/258 (14%), Positives = 68/258 (26%), Gaps = 119/258 (46%)
Query: 2 MTYPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKP--------LSGKVLAMIFEK 53
YP +++ S L +S EN E P L+ + + K
Sbjct: 312 EAYPN-----TSLPPSILE----------DSLENN-EGVPSPMLSISNLTQEQVQDYVNK 355
Query: 54 -----PSTR--------TRVSFEVAMKHLGGDTIFLSGSEMQLGR--AETIGDTAKVL-- 96
P+ + + V+ G L G + L + A + D +++
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVS-----GPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 97 SRYVDAIVMR----TTN-HSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGSV 151
R + R + HS LL A +D I D +
Sbjct: 411 ERKL-KFSNRFLPVASPFHSHLLV----------PA-SD-----LINKD----------L 443
Query: 152 KGKLFSWSG-----------DGN-------NILHSLIEGAARFNYLLNIATPIGSEPRNE 193
S++ DG+ +I +++ I P
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC---------IIR----LP--- 487
Query: 194 YLNW--ARNQGASVALFH 209
+ W A+ H
Sbjct: 488 -VKWETTTQFKAT----H 500
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.7 bits (71), Expect = 0.21
Identities = 56/253 (22%), Positives = 83/253 (32%), Gaps = 80/253 (31%)
Query: 22 IIEVAKKIKNSSE-----------NIFENK-----PLSGKVLAMI-----------FEKP 54
++E ++I N +E N F + PL G LA F
Sbjct: 1287 LLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRG-ALATYGLTIDDLGVASFHGT 1345
Query: 55 STRTRVSFEVA-----MKHLG---GDTI------FLSGSEMQLGRAETIGDTAKVLSRYV 100
ST+ E A MKHLG G+ + FL+G A + ++L+ +
Sbjct: 1346 STKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGI 1405
Query: 101 DAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSG 160
N ++LE EY P TD I + F +
Sbjct: 1406 IPGNRNADNVDKILEQFEYVLYPSKTLKTDGVRAVSITS----------------FGFGQ 1449
Query: 161 DGNN--ILHSLIEGAARFNYLLNIATPIGSEPR-NEYLN--WARNQGASVALFHDAV--- 212
G ++H +YL T E R NEY+ AR + A FH+ +
Sbjct: 1450 KGGQAIVVHP--------DYLYGAIT----EDRYNEYVAKVSAREKSA-YKFFHNGMIYN 1496
Query: 213 -QAVKGAHCVFTD 224
V H +TD
Sbjct: 1497 KLFVSKEHAPYTD 1509
Score = 31.3 bits (70), Expect = 0.31
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 20/141 (14%)
Query: 38 ENKPLSGKVLAMIFEKPSTRTRVSFEVAMKH--LGGDTIFLSGSEMQLG-RAETIGD--- 91
E K + K+ + E R VS E A++H + G++ + +++++ RA D
Sbjct: 736 ELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQLDFPE 795
Query: 92 --TAKVLSRYVDAIVMRTTNHSRLLELTEYATV-PVINALTD---------NTHPCQIIA 139
K + + A + + R++ +T +A V P +A T + C +A
Sbjct: 796 LKPYKQVKQIAPAELEGLLDLERVIVVTGFAEVGPWGSARTRWEMEAFGEFSLEGCVEMA 855
Query: 140 DIMTF-EEHRGSVKGKLFS-W 158
IM F H G++KG+ ++ W
Sbjct: 856 WIMGFISYHNGNLKGRPYTGW 876
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; 2.12A {Bacteroides fragilis nctc 9343}
Length = 430
Score = 26.4 bits (58), Expect = 9.3
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 138 IADIMTFEEHRGSVKGKLF-SWSGDGNNILHSLIEGA--ARFNYLLNIATPIGSEPRNEY 194
+ + + +R + L+ WS + ++ + G Y+L A+P P Y
Sbjct: 166 LWREVDWNWYRHGGQNVLYWHWSPEYGWEMNFPVHGYNECLIMYILAAASPTHGVPAAVY 225
Query: 195 LNWARNQGASV 205
GA V
Sbjct: 226 HEGWAQNGAIV 236
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.133 0.396
Gapped
Lambda K H
0.267 0.0527 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,539,906
Number of extensions: 110662
Number of successful extensions: 355
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 29
Length of query: 306
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 214
Effective length of database: 3,462,782
Effective search space: 741035348
Effective search space used: 741035348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)