BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|255764473|ref|YP_003064846.2| ornithine carbamoyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
(306 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|255764473|ref|YP_003064846.2| ornithine carbamoyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 306
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 1 MMTYPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRV 60
MMTYPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRV
Sbjct: 1 MMTYPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRV 60
Query: 61 SFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYA 120
SFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYA
Sbjct: 61 SFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYA 120
Query: 121 TVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLL 180
TVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLL
Sbjct: 121 TVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLL 180
Query: 181 NIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHV 240
NIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHV
Sbjct: 181 NIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHV 240
Query: 241 FQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILL 300
FQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILL
Sbjct: 241 FQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILL 300
Query: 301 WCFGII 306
WCFGII
Sbjct: 301 WCFGII 306
>gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 316
Score = 68.9 bits (167), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 116/277 (41%), Gaps = 38/277 (13%)
Query: 42 LSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRY-V 100
L G +F + STRT+ SFEVA K LG I ++ + + E I DT L+
Sbjct: 44 LQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRP 103
Query: 101 DAIVMRTTNHSRLLELTEYATVPVINALTDNT--HPCQIIADIMTFEEHRGSVKGKLFSW 158
+ IV+R + L P I D T HP Q + D +G + +
Sbjct: 104 NIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAI 163
Query: 159 SGDGNNILHSLIEGAARFNYLL--------NIATPIGSEPRNEYLNWARNQGASVALFHD 210
GD ILHS + AR + +L + PI P++ N G V +FHD
Sbjct: 164 CGD---ILHSRV---ARSDIMLLNTMGARIRVIAPITLLPKD-----ISNMG--VEVFHD 210
Query: 211 AVQAVKGAHCVFTDTWISMNQEFKARE--------EHVFQPFQVNLSLMSMAHPDALFMH 262
+ +K + + M QE R +HV + ++ + A DAL MH
Sbjct: 211 MQKGLKNVDVIM---ILRMQQERIPRSLIPSIREYKHV---YSLDEKKLKYAKKDALVMH 264
Query: 263 CLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAIL 299
P +R E+ + V DG QS++ + E + + AI+
Sbjct: 265 PGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAII 301
>gi|254780588|ref|YP_003065001.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
[Candidatus Liberibacter asiaticus str. psy62]
Length = 317
Score = 28.5 bits (62), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 36/156 (23%)
Query: 6 KHFADLSNISSSNLSCIIEVAKKI------KNSSENIFENKPLSGKVLAMIFEK--PSTR 57
+H+ D S+L I KK+ ++ SE I E + + K L+ I+ K P +
Sbjct: 2 RHYLDFEE-PISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQK 60
Query: 58 TRVSFEVAMKH--------------LGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAI 103
T+VS H L GD +F MQ+G A G ++ + +
Sbjct: 61 TQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD 120
Query: 104 VMRTTNHS-------------RLLELTEYATVPVIN 126
H+ RL+E+ + +PVI+
Sbjct: 121 TKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVIS 156
>gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 449
Score = 24.6 bits (52), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 59 RVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELT- 117
RV ++ +G D I LS S ++ G E I D S+ + I T + +RL +
Sbjct: 274 RVGIIDILREMGAD-ITLSNSRIESG--ENIADIRVRFSK-IKGI---TISDNRLRSIVD 326
Query: 118 EYATVPVINALTDNTHPCQIIADIMTFEEHRGSVK 152
EY + VI+A + + +A++MT ++ G ++
Sbjct: 327 EYPILLVISAFAEGETIIKGLAEVMTSKQFSGIIE 361
>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 762
Score = 24.6 bits (52), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 172 GAARFNYLLNIATPIGSEPRNE 193
GA F NI TP G+ P NE
Sbjct: 10 GATTFFLAFNIITPQGTPPSNE 31
>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 573
Score = 22.7 bits (47), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 208 FHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFM 261
+H A A+ VF T S+++ K EH+FQ ++ L +AL M
Sbjct: 241 YHGAKNAI-----VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,677
Number of Sequences: 1233
Number of extensions: 7187
Number of successful extensions: 24
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 9
length of query: 306
length of database: 328,796
effective HSP length: 74
effective length of query: 232
effective length of database: 237,554
effective search space: 55112528
effective search space used: 55112528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)