HHsearch alignment for GI: 255764474 and conserved domain: TIGR03492
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.82 E-value=1.9e-06 Score=62.50 Aligned_cols=242 Identities=16% Similarity=0.165 Sum_probs=135.9
Q ss_pred HHHHHHHHHCCCEEEEECCH--HH------------------HHHHHHHHHHHH--HCCEEEECCHHHHHHCCC---CEE
Q ss_conf 99999997099819997574--56------------------201134798996--266899889899974368---839
Q gi|255764474|r 82 LGVMMRDVLRMPLKLVFTSP--SQ------------------RNHSRWTRYLIS--RMDEVITTSQKSARFIER---PST 136 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~--~~------------------~~~~~~~~~l~~--~~d~ii~~s~~~~~~~~~---~~~ 136 (352)
T Consensus 104 ~pl~~A~~sg~p~~~~~~~~S~yy~~~~~~~~~~~~~~~~~g~~~~Pwe~~lm~~~rc~~Vf~RD~lTA~~L~~~gi~a~ 183 (396)
T TIGR03492 104 VPLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWERWLMRSRRCLAVFVRDRLTARDLRRQGVRAS 183 (396)
T ss_pred HHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCHHHHHCCCEEECCHHHHHHHCCCCCCEEECCCHHHHHHHHHCCCCEE
T ss_conf 88899998189816997045323660687753012332155178167799974096652995055887999997799649
Q ss_pred EECCCCCHHHHCCCCCHHHHHHHCCCCCCCCEE-EEEE-EE-CHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCH
Q ss_conf 974882777823784326878872889887279-9951-22-64451236665456530047740588631333210001
Q gi|255764474|r 137 VIMHGVDTERFRPTSNKQEARRHLKISEDAKLI-GCFG-RI-RKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLF 213 (352)
Q Consensus 137 vi~~gid~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~G-~~-~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~ 213 (352)
T Consensus 184 f~GnPm-MD~l~~~~~-------~~~~~~~~~I~LLPGSR~pEa~~nl~~~L~a~~~l~~~~~-~~f~~alap~l----~ 250 (396)
T TIGR03492 184 YLGNPM-MDGLEPPER-------KPLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQP-FVFLAAIVPSL----S 250 (396)
T ss_pred EECCCH-HCCCCCCCC-------CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEECCCC----C
T ss_conf 608734-137888887-------6678878679995898859999879999999996341488-69999868999----9
Q ss_pred HHHHHHHHHHCCCCCC-------CCCC-------CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 4667764431123322-------1222-------2223310000000000012333222222100000100111027884
Q gi|255764474|r 214 KKNLQRRIYANGLKKR-------ILFI-------DEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGV 279 (352)
Q Consensus 214 ~~~l~~~i~~~~l~~~-------V~~~-------g~~~~~~~~~~~adi~i~pS~~Eg~gl~~lEAma~G~PvI~s~~~~ 279 (352)
T Consensus 251 ~~~l~~~l~~~Gw~~~~~~~~~~~~~~~~~~~v~~~~~~f~~~l~~adl~ia~A-----GTAteQ~vgLG~Pvv~l~g~G 325 (396)
T TIGR03492 251 LEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMA-----GTATEQAVGLGKPVIQLPGKG 325 (396)
T ss_pred HHHHHHHHHHCCCEECCCCCCCCHHEECCCEEEEEECCCHHHHHHHCHHHHHCC-----CCHHHHHHHCCCCEEEECCCC
T ss_conf 899999999659700578654200010487689997384899998551144437-----709999987189879972787
Q ss_pred C------CHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 1------01002348842499659998999999999986989999999999999998299899999999
Q gi|255764474|r 280 F------SELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIG 342 (352)
Q Consensus 280 ~------~e~i~~~~g~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~a~~~~ 342 (352)
T Consensus 326 PQfT~~fA~~Q~RLLG~s-v~~~~~~p~~ia~~~~~lL~d~~~~~~~~~~gr~RlG~~Gas~RiA~~il 393 (396)
T TIGR03492 326 PQFTYGFAEAQSRLLGGS-VFLASKNPEQAAQVVRQLLADPELLERCRRNGQERMGPPGASARIAESIL 393 (396)
T ss_pred CHHHHHHHHHHHHHCCCE-EEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 277799999999862753-35268999999999999854999999999999985588658899999999