HHsearch alignment for GI: 255764474 and conserved domain: TIGR03492

>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.82  E-value=1.9e-06  Score=62.50  Aligned_cols=242  Identities=16%  Similarity=0.165  Sum_probs=135.9

Q ss_pred             HHHHHHHHHCCCEEEEECCH--HH------------------HHHHHHHHHHHH--HCCEEEECCHHHHHHCCC---CEE
Q ss_conf             99999997099819997574--56------------------201134798996--266899889899974368---839
Q gi|255764474|r   82 LGVMMRDVLRMPLKLVFTSP--SQ------------------RNHSRWTRYLIS--RMDEVITTSQKSARFIER---PST  136 (352)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~--~~------------------~~~~~~~~~l~~--~~d~ii~~s~~~~~~~~~---~~~  136 (352)
T Consensus       104 ~pl~~A~~sg~p~~~~~~~~S~yy~~~~~~~~~~~~~~~~~g~~~~Pwe~~lm~~~rc~~Vf~RD~lTA~~L~~~gi~a~  183 (396)
T TIGR03492       104 VPLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWERWLMRSRRCLAVFVRDRLTARDLRRQGVRAS  183 (396)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCHHHHHCCCEEECCHHHHHHHCCCCCCEEECCCHHHHHHHHHCCCCEE
T ss_conf             88899998189816997045323660687753012332155178167799974096652995055887999997799649


Q ss_pred             EECCCCCHHHHCCCCCHHHHHHHCCCCCCCCEE-EEEE-EE-CHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCH
Q ss_conf             974882777823784326878872889887279-9951-22-64451236665456530047740588631333210001
Q gi|255764474|r  137 VIMHGVDTERFRPTSNKQEARRHLKISEDAKLI-GCFG-RI-RKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLF  213 (352)
Q Consensus       137 vi~~gid~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~G-~~-~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~  213 (352)
T Consensus       184 f~GnPm-MD~l~~~~~-------~~~~~~~~~I~LLPGSR~pEa~~nl~~~L~a~~~l~~~~~-~~f~~alap~l----~  250 (396)
T TIGR03492       184 YLGNPM-MDGLEPPER-------KPLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQP-FVFLAAIVPSL----S  250 (396)
T ss_pred             EECCCH-HCCCCCCCC-------CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEECCCC----C
T ss_conf             608734-137888887-------6678878679995898859999879999999996341488-69999868999----9


Q ss_pred             HHHHHHHHHHCCCCCC-------CCCC-------CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf             4667764431123322-------1222-------2223310000000000012333222222100000100111027884
Q gi|255764474|r  214 KKNLQRRIYANGLKKR-------ILFI-------DEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGV  279 (352)
Q Consensus       214 ~~~l~~~i~~~~l~~~-------V~~~-------g~~~~~~~~~~~adi~i~pS~~Eg~gl~~lEAma~G~PvI~s~~~~  279 (352)
T Consensus       251 ~~~l~~~l~~~Gw~~~~~~~~~~~~~~~~~~~v~~~~~~f~~~l~~adl~ia~A-----GTAteQ~vgLG~Pvv~l~g~G  325 (396)
T TIGR03492       251 LEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMA-----GTATEQAVGLGKPVIQLPGKG  325 (396)
T ss_pred             HHHHHHHHHHCCCEECCCCCCCCHHEECCCEEEEEECCCHHHHHHHCHHHHHCC-----CCHHHHHHHCCCCEEEECCCC
T ss_conf             899999999659700578654200010487689997384899998551144437-----709999987189879972787


Q ss_pred             C------CHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             1------01002348842499659998999999999986989999999999999998299899999999
Q gi|255764474|r  280 F------SELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIG  342 (352)
Q Consensus       280 ~------~e~i~~~~g~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~a~~~~  342 (352)
T Consensus       326 PQfT~~fA~~Q~RLLG~s-v~~~~~~p~~ia~~~~~lL~d~~~~~~~~~~gr~RlG~~Gas~RiA~~il  393 (396)
T TIGR03492       326 PQFTYGFAEAQSRLLGGS-VFLASKNPEQAAQVVRQLLADPELLERCRRNGQERMGPPGASARIAESIL  393 (396)
T ss_pred             CHHHHHHHHHHHHHCCCE-EEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             277799999999862753-35268999999999999854999999999999985588658899999999