HHsearch alignment for GI: 255764474 and conserved domain: TIGR03590
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=97.91 E-value=0.0013 Score=43.49 Aligned_cols=97 Identities=12% Similarity=0.185 Sum_probs=65.3
Q ss_pred CCCEEEEEEEECHHHHHHHHHHHHHHHHCCCCCEEE-EEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 872799951226445123666545653004774058-8631333210001466776443112332212222223310000
Q gi|255764474|r 165 DAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTA-VVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDWY 243 (352)
Q Consensus 165 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l-~i~G~g~~~~~~~~~~l~~~i~~~~l~~~V~~~g~~~~~~~~~ 243 (352)
T Consensus 171 ~~~Ili~~GGsD~~~lt~~il~~l~~~---~~~~~i~vvig~~~~~----~~~i~~~~~~~---~~~~~~~~~~~m~~~m 240 (280)
T TIGR03590 171 LRRVLVSFGGADPDNLTLKLLSALAES---QINISITLVTGSSNPN----LDELKKFAKEY---PNIILFIDVENMAELM 240 (280)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHH---CCCCCEEEEECCCCCC----HHHHHHHHHHC---CCEEEECCHHHHHHHH
T ss_conf 532899977877000899999999851---6685679998679876----69999999728---9969965988999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 000000012333222222100000100111027
Q gi|255764474|r 244 RALNIFVAPPLYEGFGLTPLEAMASGIPVVASN 276 (352)
Q Consensus 244 ~~adi~i~pS~~Eg~gl~~lEAma~G~PvI~s~ 276 (352)
T Consensus 241 ~~aDlaI~-----agG~t~~El~~~gvP~i~i~ 268 (280)
T TIGR03590 241 NEADLAIG-----AAGSTSWERCCLGLPSLSIV 268 (280)
T ss_pred HHCCEEEE-----CCCHHHHHHHHHCCCEEEEE
T ss_conf 97799998-----59658999999499989999