RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764474|ref|YP_003064854.2| glycosyl transferase group 1
[Candidatus Liberibacter asiaticus str. psy62]
(352 letters)
>gnl|CDD|132132 TIGR03088, stp2, sugar transferase, PEP-CTERM/EpsH1 system
associated. Members of this family include a match to
the pfam00534 Glycosyl transferases group 1 domain.
Nearly all are found in species that encode the
PEP-CTERM/exosortase system predicted to act in protein
sorting in a number of Gram-negative bacteria. In
particular, these transferases are found proximal to a
particular variant of exosortase, EpsH1, which appears
to travel with a conserved group of genes summarized by
Genome Property GenProp0652. The nature of the sugar
transferase reaction catalyzed by members of this clade
is unknown and may conceivably be variable with respect
to substrate by species, but we hypothesize a conserved
substrate.
Length = 374
Score = 102 bits (255), Expect = 2e-22
Identities = 62/217 (28%), Positives = 105/217 (48%), Gaps = 12/217 (5%)
Query: 138 IMHGVDTERFRPTS-NKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINIL---- 192
I +GVDTERF P+ ++ ++++ ++G GR++ +K V ++
Sbjct: 165 IYNGVDTERFHPSRGDRSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLP 224
Query: 193 PHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVAP 252
V+VG + ++ + A GL + E+ + +AL++FV P
Sbjct: 225 EGAERLRLVIVGDGPAR-----GACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLP 279
Query: 253 PLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMN 312
L EG T LEAMASG+PV+A+ G EL+ ++ G +VPP + AL +A+ +++
Sbjct: 280 SLAEGISNTILEAMASGLPVIATAVGGNPELV--QHGVTGALVPPGDAVALARALQPYVS 337
Query: 313 SKKIMSDTGNRGRERAVKHFSIVKEASDIGKVYDRLL 349
G GR RA + FSI + +YD+LL
Sbjct: 338 DPAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQLL 374
>gnl|CDD|132490 TIGR03449, mycothiol_MshA, UDP-N-acetylglucosamine:
1L-myo-inositol-1-phosphate
1-alpha-D-N-acetylglucosaminyltransferase. Members of
this protein family, found exclusively in the
Actinobacteria, are MshA, the glycosyltransferase of
mycothiol biosynthesis. Mycothiol replaces glutathione
in these species.
Length = 405
Score = 89.8 bits (223), Expect = 1e-18
Identities = 59/228 (25%), Positives = 92/228 (40%), Gaps = 30/228 (13%)
Query: 137 VIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHP 196
V+ G D ERFRP ++ R L + D K++ GRI+ LK D+ + + +L P
Sbjct: 191 VVAPGADLERFRP-GDRATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDP 249
Query: 197 GWTAVVV--------GKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIE--DWYRAL 246
V+ G T L + G+ R+ F+ + E YRA
Sbjct: 250 DRNLRVIVVGGPSGSGLATPDAL---IELAAEL---GIADRVRFLPPRPPEELVHVYRAA 303
Query: 247 NIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKA 306
++ P E FGL +EA A G PVVA+ G + + + G++V + A
Sbjct: 304 DVVAVPSYNESFGLVAMEAQACGTPVVAARVGGLPVAVA--DGETGLLVDGHDPADWADA 361
Query: 307 VLYFMNSKKIMSDTGNRGR--ERAVKH---FSIVKEASDIGKVYDRLL 349
+ +++ D R R AV+H FS A + Y L
Sbjct: 362 L------ARLLDDPRTRIRMGAAAVEHAAGFSWAATADGLLSSYRDAL 403
>gnl|CDD|178460 PLN02871, PLN02871, UDP-sulfoquinovose:DAG
sulfoquinovosyltransferase.
Length = 465
Score = 66.7 bits (163), Expect = 8e-12
Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 23/197 (11%)
Query: 141 GVDTERFRPTSNKQEARRHLKISE-DAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWT 199
GVD+E F P +E R L E + LI GR+ K D M + PG
Sbjct: 237 GVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLKRVMERL----PGAR 292
Query: 200 AVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFI-----DEQSSIEDWYRALNIFVAPPL 254
VG +++ L++ G +F DE S Y + ++FV P
Sbjct: 293 LAFVGDGP-----YREELEK--MFAGT--PTVFTGMLQGDELSQA---YASGDVFVMPSE 340
Query: 255 YEGFGLTPLEAMASGIPVVASNTGVFSELLDPENA-KAGVIVPPRNLHALEKAVLYFMNS 313
E G LEAMASG+PVVA+ G +++ P+ K G + P ++ + + +
Sbjct: 341 SETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD 400
Query: 314 KKIMSDTGNRGRERAVK 330
++ G RE K
Sbjct: 401 PELRERMGAAAREEVEK 417
>gnl|CDD|162731 TIGR02149, glgA_Coryne, glycogen synthase, Corynebacterium family.
This model describes Corynebacterium glutamicum GlgA and
closely related proteins in several other species. This
enzyme is required for glycogen biosynthesis and appears
to replace the distantly related TIGR02095 family of
ADP-glucose type glycogen synthase in Corynebacterium
glutamicum, Mycobacterium tuberculosis, Bifidobacterium
longum, and Streptomyces coelicolor.
Length = 388
Score = 64.1 bits (156), Expect = 5e-11
Identities = 63/254 (24%), Positives = 98/254 (38%), Gaps = 33/254 (12%)
Query: 118 DEVITTSQKSARFIER--PST------VIMHGVDTERFRPTSNKQEARRHLKISEDAKLI 169
D VI S I + P VI +G+DT+ ++P + I I
Sbjct: 146 DRVIAVSGGMREDILKYYPDLDPEKVHVIYNGIDTKEYKP-DDGNVVLDRYGIDRSRPYI 204
Query: 170 GCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLK--------HYLFKKNLQRRI 221
GRI + KG +D + I VV+ + R
Sbjct: 205 LFVGRITRQKGVPHLLDAVHYIPKD----VQVVLCAGAPDTPEVAEEVRQAVALLDRNRT 260
Query: 222 YANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFS 281
+ K + + + + +FV P +YE G+ LEAMA G PVVAS TG
Sbjct: 261 GIIWINKML----PKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGGIP 316
Query: 282 ELLDPENAKAGVIVPPRN------LHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIV 335
E++ + + G +VPP N L KA+ + ++ G GR+RA + FS
Sbjct: 317 EVV--VDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRKRAEEEFSWG 374
Query: 336 KEASDIGKVYDRLL 349
A ++Y ++L
Sbjct: 375 SIAKKTVEMYRKVL 388
>gnl|CDD|182369 PRK10307, PRK10307, putative glycosyl transferase; Provisional.
Length = 412
Score = 51.5 bits (124), Expect = 3e-07
Identities = 56/257 (21%), Positives = 95/257 (36%), Gaps = 29/257 (11%)
Query: 94 LKLVFTSPSQRNHSRWTRYLISRMDEVITTSQK-SARFIER---PSTVIM--HGVDTERF 147
L L+ R + + R L+ R D V T S+ + E+ VI + + RF
Sbjct: 149 LGLLKGGKVARLATAFERSLLRRFDNVSTISRSMMNKAREKGVAAEKVIFFPNWSEVARF 208
Query: 148 RPTSNKQEA--RRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGK 205
+P ++ R L + + K++ G I + +G +L +D L P V+ G+
Sbjct: 209 QPVADADVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVID-AARRLRDRPDLIFVICGQ 267
Query: 206 TTLKHYLFKKNLQRRIYANGLKKRILFIDEQSS--IEDWYRALNIFVAPPLYEGFGL--- 260
K L++ GL + F+ Q + + + + P L
Sbjct: 268 GG-----GKARLEKMAQCRGLP-NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLP 321
Query: 261 TPLEAM-ASGIPVVAS---NTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKI 316
+ L M ASG VVA+ T + + GV V P ++ AL A+ +
Sbjct: 322 SKLTNMLASGRNVVATAEPGTELGQLV-----EGIGVCVEPESVEALVAAIAALARQALL 376
Query: 317 MSDTGNRGRERAVKHFS 333
G RE A +
Sbjct: 377 RPKLGTVAREYAERTLD 393
>gnl|CDD|131525 TIGR02472, sucr_P_syn_N, sucrose-phosphate synthase, putative,
glycosyltransferase domain. This family consists of the
N-terminal regions, or in some cases the entirety, of
bacterial proteins closely related to plant
sucrose-phosphate synthases (SPS). The C-terminal domain
(TIGR02471), found with most members of this family,
resembles both bona fide plant sucrose-phosphate
phosphatases (SPP) and the SPP-like domain of plant SPS.
At least two members of this family lack the SPP-like
domain, which may have binding or regulatory rather than
enzymatic activity by analogy to plant SPS. This enzyme
produces sucrose 6-phosphate and UDP from UDP-glucose
and D-fructose 6-phosphate, and may be encoded near the
gene for fructokinase.
Length = 439
Score = 51.3 bits (123), Expect = 4e-07
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 14/92 (15%)
Query: 248 IFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNL----HAL 303
IFV P L E FGLT LEA A G+P+VA++ G +++ N + G++V +L AL
Sbjct: 343 IFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDII--ANCRNGLLVDVLDLEAIASAL 400
Query: 304 EKAVLYFMNSK--KIMSDTGNRGRERAVKHFS 333
E A +S ++ S G G R H+S
Sbjct: 401 EDA---LSDSSQWQLWSRNGIEGVRR---HYS 426
>gnl|CDD|185387 PRK15490, PRK15490, Vi polysaccharide biosynthesis protein TviE;
Provisional.
Length = 578
Score = 50.9 bits (121), Expect = 5e-07
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 184 FVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDWY 243
++D L HHP V+VG L+ Q+R G+ +RILF+ + W
Sbjct: 416 WIDFAARYLQHHPATRFVLVGDGDLR-----AEAQKRAEQLGILERILFVGASRDVGYWL 470
Query: 244 RALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSE 282
+ +N+F+ YEG +EA G+PV+++ G +E
Sbjct: 471 QKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAGGSAE 509
>gnl|CDD|162872 TIGR02470, sucr_synth, sucrose synthase. This model represents
sucrose synthase, an enzyme that, despite its name,
generally uses rather produces sucrose. Sucrose plus UDP
(or ADP) becomes D-fructose plus UDP-glucose (or
ADP-glucose), which is then available for cell wall (or
starch) biosynthesis. The enzyme is homologous to
sucrose phosphate synthase, which catalyzes the
penultimate step in sucrose synthesis. Sucrose synthase
is found, so far, exclusively in plants and
cyanobacteria.
Length = 784
Score = 49.7 bits (119), Expect = 1e-06
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 248 IFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNL-HALEKA 306
IFV P LYE FGLT LEAM G+P A+ G E++ ++ +G + P + A EK
Sbjct: 646 IFVQPALYEAFGLTVLEAMTCGLPTFATRFGGPLEII--QDGVSGFHIDPYHGEEAAEKI 703
Query: 307 VLYF 310
V +F
Sbjct: 704 VDFF 707
>gnl|CDD|185381 PRK15484, PRK15484, lipopolysaccharide
1,2-N-acetylglucosaminetransferase; Provisional.
Length = 380
Score = 49.4 bits (118), Expect = 1e-06
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 137 VIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHP 196
++ +G E ++ ++ + R+ L IS D ++ GRI KG L + + H
Sbjct: 165 IVPNGFCLETYQ-SNPQPNLRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLATAHS 223
Query: 197 GWTAVVVGKTTLKHYLFKKNLQRRIY--ANGLKKRILFIDEQS--SIEDWYRALNIFVAP 252
VVVG T K Q+++ A + R + + Q + ++Y ++ V P
Sbjct: 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVP 283
Query: 253 PLY-EGFGLTPLEAMASGIPVVASNTGVFSE 282
E F + +EAMA+G PV+AS G +E
Sbjct: 284 SQVEEAFCMVAVEAMAAGKPVLASTKGGITE 314
>gnl|CDD|177747 PLN00142, PLN00142, sucrose synthase.
Length = 815
Score = 46.5 bits (111), Expect = 9e-06
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 249 FVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRN 299
FV P LYE FGLT +EAM G+P A+ G +E++ + +G + P +
Sbjct: 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEII--VDGVSGFHIDPYH 718
>gnl|CDD|162700 TIGR02095, glgA, glycogen/starch synthases, ADP-glucose type. This
family consists of glycogen (or starch) synthases that
use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose
(EC 2.4.1.11) as in animals, as the glucose donor. This
enzyme is found in bacteria and plants. Whether the name
given is glycogen synthase or starch synthase depends on
context, and therefore on substrate.
Length = 473
Score = 45.7 bits (109), Expect = 2e-05
Identities = 50/243 (20%), Positives = 78/243 (32%), Gaps = 65/243 (26%)
Query: 121 ITTSQKS------ARFIERPSTVIMHGVDTERFRPTS------------------NKQEA 156
I T + + I++G+DTE + P + NK+
Sbjct: 220 ILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEAL 279
Query: 157 RRHLKISEDAK--LIGCFGRIRKLKGTDLFVDCMINILPHHPGWTA--VVVGK------T 206
+ L + D L G R+ + KG DL ++ LP VV+G
Sbjct: 280 QEELGLPVDDDVPLFGVISRLTQQKGVDL----LLAALPELLELGGQLVVLGTGDPELEE 335
Query: 207 TLKHYLFKKNLQRRI---YANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPL 263
L+ + R+ Y L I Y + + P +E GLT L
Sbjct: 336 ALRELAERYPGNVRVIIGYDEALAHLI------------YAGADFILMPSRFEPCGLTQL 383
Query: 264 EAMASGIPVVASNTG-----VFSELLDPENAKA-GVIVPPRN----LHALEKAVLYFMNS 313
AM G + TG V DPE G + + L AL +A+ +
Sbjct: 384 YAMRYGTVPIVRRTGGLADTVVD--GDPEAESGTGFLFEEYDPGALLAALSRALRLYRQD 441
Query: 314 KKI 316
+
Sbjct: 442 PSL 444
>gnl|CDD|178527 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 42.2 bits (99), Expect = 2e-04
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 45/194 (23%)
Query: 122 TTSQKSARFIERPSTVIMHGVDTERFRP------------------TSNKQEARRHLKIS 163
T S +F+ I++G+DT+ + P +NK R+ L +S
Sbjct: 719 TLKFHSKKFVG-----ILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLS 773
Query: 164 -EDAK--LIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRR 220
DA L+GC R+ KG L + G V++G + + H +QR
Sbjct: 774 SADASQPLVGCITRLVPQKGVHLIRHAIYKTA--ELGGQFVLLGSSPVPH------IQRE 825
Query: 221 I--YANGLKKR-----ILFIDEQSSIEDW-YRALNIFVAPPLYEGFGLTPLEAMASG-IP 271
A+ + IL DE ++ Y A ++F+ P ++E GLT + AM G +P
Sbjct: 826 FEGIADQFQSNNNIRLILKYDE--ALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVP 883
Query: 272 VVASNTGVFSELLD 285
+V G+ + D
Sbjct: 884 IVRKTGGLNDSVFD 897
>gnl|CDD|162870 TIGR02468, sucrsPsyn_pln, sucrose phosphate synthase/possible
sucrose phosphate phosphatase, plant. Members of this
family are sucrose-phosphate synthases of plants. This
enzyme is known to exist in multigene families in
several species of both monocots and dicots. The
N-terminal domain is the glucosyltransferase domain.
Members of this family also have a variable linker
region and a C-terminal domain that resembles sucrose
phosphate phosphatase (SPP) (EC 3.1.3.24) (see
TIGR01485), the next and final enzyme of sucrose
biosynthesis. The SPP-like domain likely serves a
binding and not a catalytic function, as the reported
SPP is always encoded by a distinct protein.
Length = 1050
Score = 41.7 bits (98), Expect = 3e-04
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 236 QSSIEDWYR----ALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTG 278
QS + D YR +F+ P E FGLT +EA A G+P+VA+ G
Sbjct: 558 QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG 604
>gnl|CDD|185101 PRK15179, PRK15179, Vi polysaccharide biosynthesis protein TviE;
Provisional.
Length = 694
Score = 41.6 bits (97), Expect = 3e-04
Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 10/177 (5%)
Query: 161 KISEDAKL-IGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQR 219
+ DA+ +G R+ K L+V+ HP ++VG L + + +
Sbjct: 511 ARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESV--REFAQ 568
Query: 220 RIYANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGV 279
R+ G+ +RILF + W N F+ +EG +EA SG+PVV + G
Sbjct: 569 RL---GMGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG 625
Query: 280 FSELLDPENAKAGVIVPPRNLHA--LEKAVLYFMNSKKIMSDTGNRGRERAVKHFSI 334
E + E G+ +P + A + +A+ + + + A FS+
Sbjct: 626 AGEAVQ-EGV-TGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSL 680
>gnl|CDD|185325 PRK15427, PRK15427, colanic acid biosynthesis glycosyltransferase
WcaL; Provisional.
Length = 406
Score = 37.4 bits (87), Expect = 0.006
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 247 NIFVAPPL------YEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNL 300
++F+ P + EG + +EAMA GIPVV++ EL+ E K+G +VP +
Sbjct: 300 DVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELV--EADKSGWLVPENDA 357
Query: 301 HALEKAVLYFMN 312
AL + + F
Sbjct: 358 QALAQRLAAFSQ 369
>gnl|CDD|182148 PRK09922, PRK09922,
UDP-D-galactose:(glucosyl)lipopolysaccharide-1,
6-D-galactosyltransferase; Provisional.
Length = 359
Score = 34.7 bits (80), Expect = 0.036
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 255 YEGFGLTPLEAMASGIPVVASN 276
+EGF +T LEAM+ GIP ++S+
Sbjct: 267 FEGFPMTLLEAMSYGIPCISSD 288
>gnl|CDD|107050 PHA01633, PHA01633, putative glycosyl transferase group 1.
Length = 335
Score = 33.8 bits (77), Expect = 0.068
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 242 WYRALNIFVAPPLYEGFGLTPLEAMASGIPVV 273
+Y A++ + P EGFG+ LE+MA G PV+
Sbjct: 220 FYGAMDFTIVPSGTEGFGMPVLESMAMGTPVI 251
>gnl|CDD|131964 TIGR02918, TIGR02918, accessory Sec system glycosylation protein
GtfA. Members of this protein family are found only in
Gram-positive bacteria of the Firmicutes lineage,
including several species of Staphylococcus,
Streptococcus, and Lactobacillus. Members are associated
with glycosylation of serine-rich glycoproteins exported
by the accessory Sec system.
Length = 500
Score = 33.5 bits (77), Expect = 0.077
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 21/94 (22%)
Query: 195 HPGW--TAVVVGKTTLKHYLFKKNLQRRIYANGLKKRIL--FIDE-----------QSSI 239
H W AVV K ++ F IY G +K+ L I+E ++
Sbjct: 333 HIDWLVKAVVKAKKSVPELTFD------IYGEGGEKQKLQKIINENQAQDYIHLKGHRNL 386
Query: 240 EDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVV 273
+ Y+ ++++ EGFGLT +EA+ SG+ ++
Sbjct: 387 SEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMI 420
>gnl|CDD|184505 PRK14099, PRK14099, glycogen synthase; Provisional.
Length = 485
Score = 33.2 bits (76), Expect = 0.12
Identities = 42/193 (21%), Positives = 66/193 (34%), Gaps = 74/193 (38%)
Query: 138 IMHGVDTERFRPTS------------------NKQ--EARRHLKISEDAKLIGCFGRIRK 177
I++G+DT + P + NK +AR L DA L+G R+
Sbjct: 247 ILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSW 306
Query: 178 LKGTDLFVDCMINILP------------------------HHPGWTAVVVGKTTLKHYLF 213
KG DL ++ + +L +PG VV+G +
Sbjct: 307 QKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIG--------Y 358
Query: 214 KKNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASG-IPV 272
+ L I A + + P +E GLT L A+ G +PV
Sbjct: 359 DEALAHLIQAGA---------------------DALLVPSRFEPCGLTQLCALRYGAVPV 397
Query: 273 VASNTGVFSELLD 285
VA G+ ++D
Sbjct: 398 VARVGGLADTVVD 410
>gnl|CDD|163131 TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system
associated. Members of this family include a match to
the pfam00534 Glycosyl transferases group 1 domain.
Nearly all are found in species that encode the
PEP-CTERM/exosortase system predicted to act in protein
sorting in a number of Gram-negative bacteria. In
particular, these transferases are found proximal to a
particular variant of exosortase, EpsH1, which appears
to travel with a conserved group of genes summarized by
Genome Property GenProp0652. The nature of the sugar
transferase reaction catalyzed by members of this clade
is unknown and may conceivably be variable with respect
to substrate by species, but we hypothesize a conserved
substrate.
Length = 397
Score = 32.7 bits (75), Expect = 0.15
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 18/78 (23%)
Query: 263 LEAMASGIPVVASNTGVFSELLDPENAKAGVIVPP--RNLHALE-----KAVLYFMNSKK 315
LEAMA PVVAS PE A G+ P L A + A+L + +
Sbjct: 316 LEAMAMAKPVVAS----------PE-AAEGIDALPGAELLVAADPADFAAAILALLANPA 364
Query: 316 IMSDTGNRGRERAVKHFS 333
+ G R R ++H+
Sbjct: 365 EREELGQAARRRVLQHYH 382
>gnl|CDD|177950 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 32.5 bits (74), Expect = 0.17
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 243 YRALNIFVAPPLYEGFGLTPLEAMASG-IPVVASNTGVFSELLDPENAK 290
Y + + P ++E GLT L AM G IPVV G+F + D ++ K
Sbjct: 917 YAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDK 965
>gnl|CDD|164861 PHA01630, PHA01630, putative group 1 glycosyl transferase.
Length = 331
Score = 32.1 bits (73), Expect = 0.21
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 219 RRIYANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTG 278
R NG+K + D I + +I P F + +EA+A G+ VV + G
Sbjct: 187 RLFGLNGVKTPLPDDD----IYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKG 242
Query: 279 VFSELLDPE 287
+SE +
Sbjct: 243 AWSEWVLSN 251
>gnl|CDD|167080 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed.
Length = 401
Score = 30.9 bits (70), Expect = 0.48
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 253 PLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPP-------RNLHALEK 305
P GF + P + + NT F L++P +AGVI+PP R L
Sbjct: 164 PFTPGFRVVPFGDAEALEAAITPNTVAF--LVEPIQGEAGVIIPPAGYFTRVRELCTANN 221
Query: 306 AVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIGK 343
L +I + G G+ A +H I + + IGK
Sbjct: 222 VTLIL---DEIQTGLGRTGKLLAEEHEGIEADVTLIGK 256
>gnl|CDD|179083 PRK00654, glgA, glycogen synthase; Provisional.
Length = 466
Score = 30.5 bits (70), Expect = 0.69
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 152 NKQEARRHLKIS-EDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKH 210
NK+ + + +DA L R+ + KG DL ++ + +L V++G T
Sbjct: 267 NKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQGG--QLVLLG-TGDPE 323
Query: 211 Y--LFKKNLQRRIYANGLKKRILFIDEQSS--IEDWYRALNIFVAPPLYEGFGLTPLEAM 266
F+ L R Y + +I + DE + I Y ++F+ P +E GLT L A+
Sbjct: 324 LEEAFR-ALAAR-YPGKVGVQIGY-DEALAHRI---YAGADMFLMPSRFEPCGLTQLYAL 377
Query: 267 ASG-IPVVASNTG 278
G +P+V TG
Sbjct: 378 RYGTLPIV-RRTG 389
>gnl|CDD|151162 pfam10649, DUF2478, Protein of unknown function (DUF2478). This is
a family of hypothetical bacterial proteins found in the
vicinity of Molybdenum ABC transporter ATP-binding
gene-products MobA MobB and MobC. However the function
could not be confirmed. This family appears to belong to
the P-loop superfamily by alignment to pfam03266.
However, the characteristic P-loop sequence motif
appears to have diverged beyond recognition in this
family.
Length = 159
Score = 29.8 bits (68), Expect = 1.1
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 256 EGFGLTPL--EAMASGIPVVASNTGVFSELLDPENAKAG 292
EG GL EA+A+GIPV+ T V L+ A AG
Sbjct: 108 EGRGLRAEIAEALAAGIPVL---TAVPPRNLEAWRAFAG 143
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 29.7 bits (67), Expect = 1.3
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 22/79 (27%)
Query: 278 GVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIM-------------SDTGNRG 324
GV + +P AG+IVPP + YF KKI+ S G G
Sbjct: 204 GVAALFAEPIQGDAGMIVPPED---------YFKKLKKILDEHGILLVVDEVQSGLGRTG 254
Query: 325 RERAVKHFSIVKEASDIGK 343
+ A++HF + + +GK
Sbjct: 255 KWFAIEHFGVEPDIITLGK 273
>gnl|CDD|131814 TIGR02767, TraG-Ti, Ti-type conjugative transfer system protien
TraG. This protein is found in the Agrobacterium
tumefaciens Ti plasmid tra region responsible for
conjugative transfer of the entire plasmid among
Agrobacterium strains. The protein is distantly related
to the F-type conjugation system TraG protein. Both of
these systems are examples of type IV secretion systems.
Length = 623
Score = 29.5 bits (66), Expect = 1.4
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 180 GTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANG-LKKRILFI-DE 235
TD+F++ +IL +PG V++G L A+G +K R LF+ DE
Sbjct: 426 KTDVFINLPASILESYPGIGRVIIGSL----------LNAMYNADGNVKGRTLFLLDE 473
>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase. Members of
this family are putrescine aminotransferase, as found in
Escherichia coli, Erwinia carotovora subsp. atroseptica,
and closely related species. This pyridoxal phosphate
enzyme, as characterized in E. coli, can act also on
cadaverine and, more weakly, spermidine.
Length = 442
Score = 29.2 bits (65), Expect = 1.5
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 253 PLYEGFGLTP---LEAMASGIPVVASNTG--VFSELLDPENAKAGVIVPPRN----LHAL 303
PL GF +EAM + TG V + +L+P + GVI+PP + AL
Sbjct: 195 PLLPGFHHVAFGDIEAMLKALNE-CKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRAL 253
Query: 304 EKAVLYFMNSKKIMSDTGNRGRERAVKHFSI 334
+ ++ + G G+ A +H +
Sbjct: 254 CDEFGALLILDEVQTGMGRTGKMFACEHEGV 284
>gnl|CDD|162673 TIGR02049, gshA_ferroox, glutamate--cysteine ligase, T.
ferrooxidans family. This family consists of a rare
family of glutamate--cysteine ligases, demonstrated
first in Thiobacillus ferrooxidans and present in a few
other Proteobacteria. It is the first of two enzymes for
glutathione biosynthesis. It is also called
gamma-glutamylcysteine synthetase.
Length = 403
Score = 28.7 bits (64), Expect = 2.7
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 230 ILFIDEQSSIEDWYRALNIFVAPPLY-------EGFGLTPLEA 265
I +D + SIE W+RA PP Y G+ + P++
Sbjct: 2 IKILDLEKSIERWFRAQWQGHTPPFYSSVDLRNAGYKIAPVDT 44
>gnl|CDD|140319 PTZ00298, PTZ00298, mevalonate kinase; Provisional.
Length = 328
Score = 28.3 bits (63), Expect = 2.9
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 18/105 (17%)
Query: 180 GTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSI 239
G D + +C + + PG VV + + Y+ +K ++R A+ L R L ID
Sbjct: 37 GIDEYTECRLELTKGVPG-LQVVDQRPAVPGYIVEKREEQRK-AHQLVLRHLNIDTSVD- 93
Query: 240 EDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELL 284
L + + P L P +SGI AS+ S L
Sbjct: 94 -----GLKMHLGGP------LVP----SSGIGASASDVVSLSRAL 123
>gnl|CDD|179248 PRK01212, PRK01212, homoserine kinase; Provisional.
Length = 301
Score = 28.2 bits (64), Expect = 3.0
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 24/61 (39%)
Query: 45 LPKNIP------SIGISSLLTCWKKPIGQNSRIWHA-RRNNEMLLGVMMRDVL----RMP 93
LPK + ++LL A + L G M+DVL R
Sbjct: 185 LPKQYSLKDAVFNSSRAALLV-------------AALYTGDYELAGRAMKDVLHEPYRAK 231
Query: 94 L 94
L
Sbjct: 232 L 232
>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.
Length = 396
Score = 28.1 bits (63), Expect = 3.2
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 253 PLYEGFGLTP---LEAMASGIPVVASNTGVFSELLDPENAKAGVIVPP 297
P+ G P LEA+ + I NT F L++P +AG+ +PP
Sbjct: 163 PMLPGIKKIPYGDLEALKAAI---TPNTAAF--LVEPIQGEAGINIPP 205
>gnl|CDD|172350 PRK13822, PRK13822, conjugal transfer coupling protein TraG;
Provisional.
Length = 641
Score = 27.6 bits (62), Expect = 5.6
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 14/59 (23%)
Query: 180 GTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIY-ANG-LKKRILFI-DE 235
TD+F++ + IL +PG V++G +L +Y A+G +K R LF+ DE
Sbjct: 438 NTDVFINIPLKILESYPGLARVIIG-----------SLLNAMYNADGNVKGRALFLLDE 485
>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
Provisional.
Length = 459
Score = 27.4 bits (61), Expect = 5.9
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 253 PLYEGFGLTP---LEAMASGIPVVASN-TGVFSELLDPENAKAGVIVPPRN 299
PL GF P +EAM + + V + +L+P + GVI+PP
Sbjct: 202 PLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEG 252
>gnl|CDD|162413 TIGR01547, phage_term_2, phage terminase, large subunit, PBSX
family. This model detects members of a highly
divergent family of the large subunit of phage
terminase. All members are encoded by phage genomes or
within prophage regions of bacterial genomes. This is a
distinct family from pfam03354.
Length = 396
Score = 27.0 bits (60), Expect = 7.0
Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 17/96 (17%)
Query: 151 SNKQEARRHLKISEDAKLI---GCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTT 207
K ++ +KI K G + KLK + +
Sbjct: 66 FKKSKSSMEIKILNTGKKFIFKGLNDKPNKLKSGAGIAIIWFE--------------EAS 111
Query: 208 LKHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDWY 243
+ K L R+ G KK I+F S W
Sbjct: 112 QLTFEDIKELIPRLRETGGKKFIIFSSNPESPLHWV 147
>gnl|CDD|184626 PRK14329, PRK14329, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 467
Score = 26.9 bits (60), Expect = 8.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 323 RGRERAVKHFSIVKEASDI 341
RGRER+ SI+ E D+
Sbjct: 191 RGRERSRDPESILNEVRDL 209
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.138 0.416
Gapped
Lambda K H
0.267 0.0671 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,911,012
Number of extensions: 388253
Number of successful extensions: 731
Number of sequences better than 10.0: 1
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 41
Length of query: 352
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 258
Effective length of database: 3,963,321
Effective search space: 1022536818
Effective search space used: 1022536818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.2 bits)