Query gi|255764475|ref|YP_003084341.1| hypothetical protein CLIBASIA_03592 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 59 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 13:15:23 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764475.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2al6_A Focal adhesion kinase 37.3 23 0.00067 17.2 2.3 34 19-52 64-100 (123) 2 >2k8s_A Thioredoxin; dimer, st 23.4 24 0.00072 17.1 0.5 17 2-18 53-69 (80) 3 >2j0j_A Focal adhesion kinase 22.4 44 0.0013 15.6 1.6 34 19-52 64-100 (122) 4 >16vp_A Protein (VP16, VMW65, 20.3 68 0.002 14.6 2.2 15 42-56 123-137 (203) 5 >3d33_A Domain of unknown func 15.2 71 0.0021 14.5 1.3 29 3-31 23-51 (108) 6 >2izy_A CAMP-dependent protein 11.4 1.2E+02 0.0036 13.2 1.8 12 43-54 12-23 (54) 7 >2oxl_A Hypothetical protein Y 11.1 1.2E+02 0.0037 13.2 1.7 14 31-44 24-37 (64) 8 >1yx3_A Hypothetical protein D 10.2 1.3E+02 0.0039 13.0 2.3 16 38-53 5-20 (71) 9 >3d3b_J 30S ribosomal protein 8.9 93 0.0028 13.8 0.3 17 14-30 33-49 (87) 10 >1sau_A Sulfite reductase, des 8.8 1.5E+02 0.0045 12.7 2.3 17 37-53 8-24 (74) No 1 >>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} (A:222-344) Probab=37.34 E-value=23 Score=17.25 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=20.7 Q ss_pred CEEEEEC---CCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5389704---772178876999999999999887899 Q gi|255764475|r 19 NVQISIP---FPMPIVAMPAIILWLIITLLRGYCREY 52 (59) Q Consensus 19 nvqisip---fpmpivampaiilwliitllrgycrey 52 (59) .+|++|- -|+-+..+..-.-.-+.-|+.||||-+ T Consensus 64 ~v~l~I~ga~e~l~i~~~s~~~A~~lA~LIdGYcrL~ 100 (123) T 2al6_A 64 MLQLKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLV 100 (123) T ss_dssp EEEEEETTCSSCEEEEESSHHHHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHH T ss_conf 9999866887449998389899999999999999987 No 2 >>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} (A:) Probab=23.35 E-value=24 Score=17.06 Aligned_cols=17 Identities=47% Similarity=0.638 Sum_probs=12.9 Q ss_pred CCCCCCCCCCCEEEECC Q ss_conf 53223105760003126 Q gi|255764475|r 2 VKSIPAIVPNTAILQEN 18 (59) Q Consensus 2 vksipaivpntailqen 18 (59) |||.||.|-|...|.-| T Consensus 53 VkSVPALV~~G~vlHIN 69 (80) T 2k8s_A 53 VKSVPALVIDGAAFHIN 69 (80) T ss_dssp CCEEEEEEETTEEEEEE T ss_pred CCCCCEEEECCCEEEEE T ss_conf 64256598879589997 No 3 >>2j0j_A Focal adhesion kinase 1; cell migration, phosphorylation, FERM, transferase, ATP-binding, integrin signaling, nucleotide-binding; HET: 4ST; 2.8A {Gallus gallus} PDB: 2j0k_A* (A:222-343) Probab=22.44 E-value=44 Score=15.63 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=18.4 Q ss_pred CEEEEECC---CCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 53897047---72178876999999999999887899 Q gi|255764475|r 19 NVQISIPF---PMPIVAMPAIILWLIITLLRGYCREY 52 (59) Q Consensus 19 nvqisipf---pmpivampaiilwliitllrgycrey 52 (59) .|+|++-- |+-+.-+.--.-.-...|+.||||-. T Consensus 64 ~V~i~i~d~~~~L~i~~~s~~~A~s~a~LIDGY~RL~ 100 (122) T 2j0j_A 64 MLQLKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLV 100 (122) T ss_dssp EEEEEESSCSSCEEEEESSHHHHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHCC T ss_conf 4899863788766771576677776267666451033 No 4 >>16vp_A Protein (VP16, VMW65, ATIF); transcriptional regulatory protein; 2.10A {Herpes simplex virus type 1} (A:1-203) Probab=20.27 E-value=68 Score=14.59 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=11.6 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999998878999876 Q gi|255764475|r 42 ITLLRGYCREYIIFL 56 (59) Q Consensus 42 itllrgycreyiifl 56 (59) -+||.||||.-+-+| T Consensus 123 ~~Ll~~YCrAL~~YL 137 (203) T 16vp_A 123 RTVLANFCSALYRYL 137 (203) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999999 No 5 >>3d33_A Domain of unknown function with AN immunoglobulin-like beta-sandwich fold; YP_001297618.1; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482} (A:) Probab=15.15 E-value=71 Score=14.49 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=23.2 Q ss_pred CCCCCCCCCCEEEECCCEEEEECCCCHHH Q ss_conf 32231057600031265389704772178 Q gi|255764475|r 3 KSIPAIVPNTAILQENNVQISIPFPMPIV 31 (59) Q Consensus 3 ksipaivpntailqennvqisipfpmpiv 31 (59) +|++...|-+|-+.+|++-|....+.+-| T Consensus 23 rsi~~~iPi~A~id~~~L~I~F~~~~~~v 51 (108) T 3d33_A 23 RSAATNCPITVFTDGYLLTLKNASPDRDX 51 (108) T ss_dssp -----CCSEEEEEETTEEEEEESSCCSEE T ss_pred EECCCCCCCEEEEECCEEEEEECCCCCCE T ss_conf 63378999699993999999973678966 No 6 >>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} (A:) Probab=11.41 E-value=1.2e+02 Score=13.22 Aligned_cols=12 Identities=42% Similarity=0.672 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHH Q ss_conf 999988789998 Q gi|255764475|r 43 TLLRGYCREYII 54 (59) Q Consensus 43 tllrgycreyii 54 (59) .+|.+|+||.+- T Consensus 12 ~lL~~ftreVLR 23 (54) T 2izy_A 12 ELLQGYTVEVLR 23 (54) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 7 >>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding protein, dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli} (A:) Probab=11.12 E-value=1.2e+02 Score=13.16 Aligned_cols=14 Identities=50% Similarity=0.477 Sum_probs=10.2 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 88769999999999 Q gi|255764475|r 31 VAMPAIILWLIITL 44 (59) Q Consensus 31 vampaiilwliitl 44 (59) |.--+||+|||-.| T Consensus 24 vtNKaIIl~LI~kL 37 (64) T 2oxl_A 24 VNNKNIILSLIHSL 37 (64) T ss_dssp CSHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHH T ss_conf 64699999999998 No 8 >>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum} (A:62-132) Probab=10.22 E-value=1.3e+02 Score=12.98 Aligned_cols=16 Identities=50% Similarity=0.914 Sum_probs=13.3 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999998878999 Q gi|255764475|r 38 LWLIITLLRGYCREYI 53 (59) Q Consensus 38 lwliitllrgycreyi 53 (59) -|-+|..+|.|-.||- T Consensus 5 Hw~vI~~lR~~Y~e~~ 20 (71) T 1yx3_A 5 HWDIINFLREYYEEYQ 20 (71) T ss_dssp HHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHC T ss_conf 9999999999999968 No 9 >>3d3b_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermination; HET: NHE; 1.30A {Escherichia coli K12} PDB: 3imq_J 3d3c_J (J:) Probab=8.88 E-value=93 Score=13.84 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=13.3 Q ss_pred EEECCCEEEEECCCCHH Q ss_conf 03126538970477217 Q gi|255764475|r 14 ILQENNVQISIPFPMPI 30 (59) Q Consensus 14 ilqennvqisipfpmpi 30 (59) +.+.++++++-|.|+|- T Consensus 33 ~ak~~~~~v~GPIpLPT 49 (87) T 3d3b_J 33 TAKRTGAQVRGPIPLPT 49 (87) T ss_dssp HHHTTTCEEEEEEEEEE T ss_pred HHHHCCCEEECCCCCCC T ss_conf 98755997852514887 No 10 >>1sau_A Sulfite reductase, desulfoviridin-type subunit gamma; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus dsm 4304} PDB: 2a5w_A (A:42-115) Probab=8.79 E-value=1.5e+02 Score=12.66 Aligned_cols=17 Identities=41% Similarity=0.651 Sum_probs=13.7 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999998878999 Q gi|255764475|r 37 ILWLIITLLRGYCREYI 53 (59) Q Consensus 37 ilwliitllrgycreyi 53 (59) --|-+|..+|.|-.||- T Consensus 8 ~Hw~vI~~lR~~Y~e~~ 24 (74) T 1sau_A 8 EHWKIIRYLRDYFIKYG 24 (74) T ss_dssp HHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 99999999999999968 Done!