Query gi|255764475|ref|YP_003084341.1| hypothetical protein CLIBASIA_03592 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 59
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 30 12:23:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764475.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k8s_A Thioredoxin; dimer, str 20.0 22 0.00093 16.4 0.5 15 2-16 53-67 (80)
2 3or1_C Sulfite reductase GAMA; 14.1 70 0.0029 13.7 2.3 17 38-54 46-62 (105)
3 1ji8_A Dissimilatory siroheme- 13.7 45 0.0019 14.8 0.8 17 37-53 51-67 (111)
4 1cnt_1 CNTF, ciliary neurotrop 13.1 75 0.0032 13.5 1.8 16 43-58 154-171 (187)
5 16vp_A Protein (VP16, VMW65, A 11.8 82 0.0035 13.3 2.2 16 41-56 122-137 (366)
6 1yx3_A Hypothetical protein DS 10.8 89 0.0038 13.1 2.3 17 37-53 65-81 (132)
7 2oxl_A Hypothetical protein YM 10.3 93 0.0039 13.0 1.7 14 31-44 24-37 (64)
8 2kyg_A CAMP-dependent protein 9.7 98 0.0041 12.9 1.8 22 19-53 6-27 (50)
9 1sau_A Sulfite reductase, desu 9.5 1E+02 0.0042 12.8 2.3 16 38-53 50-65 (115)
10 2izy_A CAMP-dependent protein 9.3 1E+02 0.0043 12.8 1.8 11 43-53 12-22 (54)
No 1
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=19.99 E-value=22 Score=16.45 Aligned_cols=15 Identities=47% Similarity=0.698 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCEEEE
Q ss_conf 532231057600031
Q gi|255764475|r 2 VKSIPAIVPNTAILQ 16 (59)
Q Consensus 2 vksipaivpntailq 16 (59)
|||.||.|-|...+.
T Consensus 53 VkSVPALV~~G~vlH 67 (80)
T 2k8s_A 53 VKSVPALVIDGAAFH 67 (80)
T ss_dssp CCEEEEEEETTEEEE
T ss_pred CCCCCEEEECCCEEE
T ss_conf 742566998795899
No 2
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_C* 2v4j_C*
Probab=14.12 E-value=70 Score=13.69 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999988789998
Q gi|255764475|r 38 LWLIITLLRGYCREYII 54 (59)
Q Consensus 38 lwliitllrgycreyii 54 (59)
-|-+|..+|.|-.+|-.
T Consensus 46 Hw~vI~~lR~~y~~~~~ 62 (105)
T 3or1_C 46 HQKIIDFLQDYYKANGI 62 (105)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999999589
No 3
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=13.70 E-value=45 Score=14.76 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999998878999
Q gi|255764475|r 37 ILWLIITLLRGYCREYI 53 (59)
Q Consensus 37 ilwliitllrgycreyi 53 (59)
--|-||..+|.|-+||-
T Consensus 51 ~HW~vI~~lR~~y~e~~ 67 (111)
T 1ji8_A 51 EHWKLVKYLREYWETFG 67 (111)
T ss_dssp HHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999999978
No 4
>1cnt_1 CNTF, ciliary neurotrophic factor; cytokine, growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.1
Probab=13.07 E-value=75 Score=13.52 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=12.1
Q ss_pred HHHHHH--HHHHHHHHHC
Q ss_conf 999988--7899987642
Q gi|255764475|r 43 TLLRGY--CREYIIFLSR 58 (59)
Q Consensus 43 tllrgy--creyiiflsr 58 (59)
-.+||| ||||..+++|
T Consensus 154 ~Kl~G~~Vlrel~~w~~r 171 (187)
T 1cnt_1 154 KKLWGLKVLQELSQWTVR 171 (187)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 997332469999999999
No 5
>16vp_A Protein (VP16, VMW65, ATIF); transcriptional regulatory protein; 2.10A {Human herpesvirus 1} SCOP: d.180.1.1
Probab=11.82 E-value=82 Score=13.29 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999998878999876
Q gi|255764475|r 41 IITLLRGYCREYIIFL 56 (59)
Q Consensus 41 iitllrgycreyiifl 56 (59)
--+||.||||.-+-+|
T Consensus 122 Y~~LL~~YCrAL~~YL 137 (366)
T 16vp_A 122 YRTVLANFCSALYRYL 137 (366)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 6
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=10.81 E-value=89 Score=13.10 Aligned_cols=17 Identities=47% Similarity=0.808 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999998878999
Q gi|255764475|r 37 ILWLIITLLRGYCREYI 53 (59)
Q Consensus 37 ilwliitllrgycreyi 53 (59)
--|-+|.++|.|-.+|-
T Consensus 65 ~HW~VI~~lR~~Y~e~~ 81 (132)
T 1yx3_A 65 EHWDIINFLREYYEEYQ 81 (132)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999999978
No 7
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding protein, dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=10.30 E-value=93 Score=13.00 Aligned_cols=14 Identities=50% Similarity=0.477 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 88769999999999
Q gi|255764475|r 31 VAMPAIILWLIITL 44 (59)
Q Consensus 31 vampaiilwliitl 44 (59)
|.--+||+|||-.|
T Consensus 24 vtNKaIIl~LI~~L 37 (64)
T 2oxl_A 24 VNNKNIILSLIHSL 37 (64)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 76799999999998
No 8
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=9.71 E-value=98 Score=12.87 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=13.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53897047721788769999999999998878999
Q gi|255764475|r 19 NVQISIPFPMPIVAMPAIILWLIITLLRGYCREYI 53 (59)
Q Consensus 19 nvqisipfpmpivampaiilwliitllrgycreyi 53 (59)
+-||.||--.| .+|++|+||.+
T Consensus 6 ~~~i~IP~gl~-------------~lL~~ftreVL 27 (50)
T 2kyg_A 6 MSHIQIPPGLT-------------ELLQGYTVEVL 27 (50)
T ss_dssp TCCCCCCTTHH-------------HHHHHHHHHHH
T ss_pred CCCCCCCCCHH-------------HHHHHHHHHHH
T ss_conf 22367996569-------------99999999999
No 9
>1sau_A Sulfite reductase, desulfoviridin-type subunit gamma; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus dsm 4304} PDB: 2a5w_A
Probab=9.55 E-value=1e+02 Score=12.84 Aligned_cols=16 Identities=44% Similarity=0.748 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999998878999
Q gi|255764475|r 38 LWLIITLLRGYCREYI 53 (59)
Q Consensus 38 lwliitllrgycreyi 53 (59)
-|-+|..+|.|-++|-
T Consensus 50 Hw~vI~~lR~~y~~~~ 65 (115)
T 1sau_A 50 HWKIIRYLRDYFIKYG 65 (115)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999999999999968
No 10
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=9.28 E-value=1e+02 Score=12.78 Aligned_cols=11 Identities=45% Similarity=0.806 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 99998878999
Q gi|255764475|r 43 TLLRGYCREYI 53 (59)
Q Consensus 43 tllrgycreyi 53 (59)
.+|++|+||.+
T Consensus 12 ~lL~~ftreVL 22 (54)
T 2izy_A 12 ELLQGYTVEVL 22 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
Done!