Query gi|255764475|ref|YP_003084341.1| hypothetical protein CLIBASIA_03592 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 59 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 05:34:36 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764475.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2al6a2 b.55.1.5 (A:254-363) F 21.8 19 0.0014 15.5 1.6 34 19-52 62-98 (110) 2 d16vpa_ d.180.1.1 (A:) Conserv 12.9 44 0.0032 13.5 2.2 16 41-56 122-137 (356) 3 d2v4jc1 d.203.1.1 (C:3-105) Ds 12.4 46 0.0033 13.4 2.3 17 37-53 43-59 (103) 4 d1ji8a_ d.203.1.1 (A:) DsrC, t 10.5 37 0.0027 13.9 0.8 17 37-53 51-67 (111) 5 d2v33a1 b.1.18.4 (A:293-382) F 7.5 70 0.0051 12.4 1.3 14 9-22 41-54 (90) 6 d1eiwa_ c.23.3.1 (A:) Hypothet 7.5 33 0.0024 14.2 -0.5 14 46-59 11-24 (111) 7 d2hwna1 a.31.1.1 (A:5-43) cAMP 5.7 89 0.0065 11.8 1.8 11 43-53 7-17 (39) 8 d1cnt1_ a.26.1.1 (1:) Ciliary 5.3 94 0.0068 11.7 1.8 15 44-58 145-161 (177) 9 d1xrsb2 d.230.4.1 (B:33-84) D- 3.9 1.2E+02 0.0088 11.1 0.9 13 19-31 1-13 (52) 10 d2j01i2 d.100.1.1 (I:1-55) Rib 3.5 1.1E+02 0.0082 11.2 0.1 9 46-54 23-31 (55) No 1 >d2al6a2 b.55.1.5 (A:254-363) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Probab=21.82 E-value=19 Score=15.51 Aligned_cols=34 Identities=32% Similarity=0.576 Sum_probs=20.4 Q ss_pred CEEEEECC-CCHHH-HHHH-HHHHHHHHHHHHHHHHH Q ss_conf 53897047-72178-8769-99999999999887899 Q gi|255764475|r 19 NVQISIPF-PMPIV-AMPA-IILWLIITLLRGYCREY 52 (59) Q Consensus 19 nvqisipf-pmpiv-ampa-iilwliitllrgycrey 52 (59) .+|++|-- +-|++ .|+. -.-+-+-.|+.||||-+ T Consensus 62 ~lql~i~ga~epL~it~~s~~~Ae~lAdLIdGYCrL~ 98 (110) T d2al6a2 62 MLQLKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLV 98 (110) T ss_dssp EEEEEETTCSSCEEEEESSHHHHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCEEEECCCHHHHHHHHHHHHHEEEEE T ss_conf 9999983788775998588889878999864317876 No 2 >d16vpa_ d.180.1.1 (A:) Conserved core of transcriptional regulatory protein vp16 {Herpes simplex virus type 1 [TaxId: 10298]} Probab=12.91 E-value=44 Score=13.49 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=12.2 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999998878999876 Q gi|255764475|r 41 IITLLRGYCREYIIFL 56 (59) Q Consensus 41 iitllrgycreyiifl 56 (59) --+||.||||.-+-+| T Consensus 122 Y~~Ll~~YC~AL~~yL 137 (356) T d16vpa_ 122 YRTVLANFCSALYRYL 137 (356) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999999 No 3 >d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of dissimilatory sulfite reductase {Desulfovibrio vulgaris [TaxId: 881]} Probab=12.38 E-value=46 Score=13.40 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=14.4 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999998878999 Q gi|255764475|r 37 ILWLIITLLRGYCREYI 53 (59) Q Consensus 37 ilwliitllrgycreyi 53 (59) --|-+|..+|.|-.+|- T Consensus 43 ~HW~vI~~lR~~y~~~~ 59 (103) T d2v4jc1 43 DHQKIIDFLQDYYKKNG 59 (103) T ss_dssp HHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 99999999999999968 No 4 >d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory sulfite reductase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Probab=10.51 E-value=37 Score=13.87 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=13.8 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999998878999 Q gi|255764475|r 37 ILWLIITLLRGYCREYI 53 (59) Q Consensus 37 ilwliitllrgycreyi 53 (59) --|-||..+|.|-.+|- T Consensus 51 ~Hw~vI~~lR~~y~~~~ 67 (111) T d1ji8a_ 51 EHWKLVKYLREYWETFG 67 (111) T ss_dssp HHHHHHHHHHHHTTTTS T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 99999999999999978 No 5 >d2v33a1 b.1.18.4 (A:293-382) Fusion glycoprotein E1 {Semliki forest virus [TaxId: 11033]} Probab=7.55 E-value=70 Score=12.35 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=10.9 Q ss_pred CCCCEEEECCCEEE Q ss_conf 57600031265389 Q gi|255764475|r 9 VPNTAILQENNVQI 22 (59) Q Consensus 9 vpntailqennvqi 22 (59) --|+|.|||.+|.+ T Consensus 41 ~S~~atl~Es~v~v 54 (90) T d2v33a1 41 HSNVATLQEATAKV 54 (90) T ss_dssp CCSSEEESBSEEEE T ss_pred CCCCEEEEEEEEEE T ss_conf 78816878627887 No 6 >d1eiwa_ c.23.3.1 (A:) Hypothetical protein MTH538 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=7.53 E-value=33 Score=14.17 Aligned_cols=14 Identities=43% Similarity=0.852 Sum_probs=9.2 Q ss_pred HHHHHHHHHHHHCC Q ss_conf 98878999876429 Q gi|255764475|r 46 RGYCREYIIFLSRL 59 (59) Q Consensus 46 rgycreyiiflsrl 59 (59) .|-|++|-.|+.|+ T Consensus 11 ~~~~~d~~~~~er~ 24 (111) T d1eiwa_ 11 EGEVEDYRVFLERL 24 (111) T ss_dssp CCCSHHHHHHHHHH T ss_pred CCCHHHHHHHHHHH T ss_conf 68503599999999 No 7 >d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]} Probab=5.69 E-value=89 Score=11.78 Aligned_cols=11 Identities=45% Similarity=0.806 Sum_probs=7.8 Q ss_pred HHHHHHHHHHH Q ss_conf 99998878999 Q gi|255764475|r 43 TLLRGYCREYI 53 (59) Q Consensus 43 tllrgycreyi 53 (59) .+|.+|+||.+ T Consensus 7 ~lL~~ftrevL 17 (39) T d2hwna1 7 ELLQGYTVEVL 17 (39) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 8 >d1cnt1_ a.26.1.1 (1:) Ciliary neurotrophic factor (CNTF) {Human (Homo sapiens) [TaxId: 9606]} Probab=5.35 E-value=94 Score=11.66 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=9.8 Q ss_pred HHHHH--HHHHHHHHHC Q ss_conf 99988--7899987642 Q gi|255764475|r 44 LLRGY--CREYIIFLSR 58 (59) Q Consensus 44 llrgy--creyiiflsr 58 (59) -+||| ||||--+++| T Consensus 145 K~~G~~Vlrey~~w~~r 161 (177) T d1cnt1_ 145 KLWGLKVLQELSQWTVR 161 (177) T ss_dssp HHHHHHHHHHHHHHHHH T ss_pred HHCCCCHHHHHHHHHHH T ss_conf 96471129699999999 No 9 >d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]} Probab=3.93 E-value=1.2e+02 Score=11.06 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=9.2 Q ss_pred CEEEEECCCCHHH Q ss_conf 5389704772178 Q gi|255764475|r 19 NVQISIPFPMPIV 31 (59) Q Consensus 19 nvqisipfpmpiv 31 (59) .||.|...|.|.- T Consensus 1 kVQlSFTLPVp~g 13 (52) T d1xrsb2 1 KVQLSFTLPLKNN 13 (52) T ss_dssp CEEEEEEESSCSS T ss_pred CEEEEEEEECCCC T ss_conf 9038998407998 No 10 >d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]} Probab=3.52 E-value=1.1e+02 Score=11.21 Aligned_cols=9 Identities=44% Similarity=1.221 Sum_probs=0.0 Q ss_pred HHHHHHHHH Q ss_conf 988789998 Q gi|255764475|r 46 RGYCREYII 54 (59) Q Consensus 46 rgycreyii 54 (59) .||.|.|.| T Consensus 23 ~GyaRN~Li 31 (55) T d2j01i2 23 PGYARNYLL 31 (55) T ss_dssp HHHHHHTTT T ss_pred HHHHHHHHC T ss_conf 366888826 Done!