Query         gi|255764475|ref|YP_003084341.1| hypothetical protein CLIBASIA_03592 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 59
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 05:34:36 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764475.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2al6a2 b.55.1.5 (A:254-363) F  21.8      19  0.0014   15.5   1.6   34   19-52     62-98  (110)
  2 d16vpa_ d.180.1.1 (A:) Conserv  12.9      44  0.0032   13.5   2.2   16   41-56    122-137 (356)
  3 d2v4jc1 d.203.1.1 (C:3-105) Ds  12.4      46  0.0033   13.4   2.3   17   37-53     43-59  (103)
  4 d1ji8a_ d.203.1.1 (A:) DsrC, t  10.5      37  0.0027   13.9   0.8   17   37-53     51-67  (111)
  5 d2v33a1 b.1.18.4 (A:293-382) F   7.5      70  0.0051   12.4   1.3   14    9-22     41-54  (90)
  6 d1eiwa_ c.23.3.1 (A:) Hypothet   7.5      33  0.0024   14.2  -0.5   14   46-59     11-24  (111)
  7 d2hwna1 a.31.1.1 (A:5-43) cAMP   5.7      89  0.0065   11.8   1.8   11   43-53      7-17  (39)
  8 d1cnt1_ a.26.1.1 (1:) Ciliary    5.3      94  0.0068   11.7   1.8   15   44-58    145-161 (177)
  9 d1xrsb2 d.230.4.1 (B:33-84) D-   3.9 1.2E+02  0.0088   11.1   0.9   13   19-31      1-13  (52)
 10 d2j01i2 d.100.1.1 (I:1-55) Rib   3.5 1.1E+02  0.0082   11.2   0.1    9   46-54     23-31  (55)

No 1  
>d2al6a2 b.55.1.5 (A:254-363) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=21.82  E-value=19  Score=15.51  Aligned_cols=34  Identities=32%  Similarity=0.576  Sum_probs=20.4

Q ss_pred             CEEEEECC-CCHHH-HHHH-HHHHHHHHHHHHHHHHH
Q ss_conf             53897047-72178-8769-99999999999887899
Q gi|255764475|r   19 NVQISIPF-PMPIV-AMPA-IILWLIITLLRGYCREY   52 (59)
Q Consensus        19 nvqisipf-pmpiv-ampa-iilwliitllrgycrey   52 (59)
                      .+|++|-- +-|++ .|+. -.-+-+-.|+.||||-+
T Consensus        62 ~lql~i~ga~epL~it~~s~~~Ae~lAdLIdGYCrL~   98 (110)
T d2al6a2          62 MLQLKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLV   98 (110)
T ss_dssp             EEEEEETTCSSCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCEEEECCCHHHHHHHHHHHHHEEEEE
T ss_conf             9999983788775998588889878999864317876


No 2  
>d16vpa_ d.180.1.1 (A:) Conserved core of transcriptional regulatory protein vp16 {Herpes simplex virus type 1 [TaxId: 10298]}
Probab=12.91  E-value=44  Score=13.49  Aligned_cols=16  Identities=25%  Similarity=0.571  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999998878999876
Q gi|255764475|r   41 IITLLRGYCREYIIFL   56 (59)
Q Consensus        41 iitllrgycreyiifl   56 (59)
                      --+||.||||.-+-+|
T Consensus       122 Y~~Ll~~YC~AL~~yL  137 (356)
T d16vpa_         122 YRTVLANFCSALYRYL  137 (356)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999999


No 3  
>d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of dissimilatory sulfite reductase {Desulfovibrio vulgaris [TaxId: 881]}
Probab=12.38  E-value=46  Score=13.40  Aligned_cols=17  Identities=24%  Similarity=0.206  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999998878999
Q gi|255764475|r   37 ILWLIITLLRGYCREYI   53 (59)
Q Consensus        37 ilwliitllrgycreyi   53 (59)
                      --|-+|..+|.|-.+|-
T Consensus        43 ~HW~vI~~lR~~y~~~~   59 (103)
T d2v4jc1          43 DHQKIIDFLQDYYKKNG   59 (103)
T ss_dssp             HHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHC
T ss_conf             99999999999999968


No 4  
>d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory sulfite reductase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=10.51  E-value=37  Score=13.87  Aligned_cols=17  Identities=24%  Similarity=0.571  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999998878999
Q gi|255764475|r   37 ILWLIITLLRGYCREYI   53 (59)
Q Consensus        37 ilwliitllrgycreyi   53 (59)
                      --|-||..+|.|-.+|-
T Consensus        51 ~Hw~vI~~lR~~y~~~~   67 (111)
T d1ji8a_          51 EHWKLVKYLREYWETFG   67 (111)
T ss_dssp             HHHHHHHHHHHHTTTTS
T ss_pred             HHHHHHHHHHHHHHHHC
T ss_conf             99999999999999978


No 5  
>d2v33a1 b.1.18.4 (A:293-382) Fusion glycoprotein E1 {Semliki forest virus [TaxId: 11033]}
Probab=7.55  E-value=70  Score=12.35  Aligned_cols=14  Identities=36%  Similarity=0.458  Sum_probs=10.9

Q ss_pred             CCCCEEEECCCEEE
Q ss_conf             57600031265389
Q gi|255764475|r    9 VPNTAILQENNVQI   22 (59)
Q Consensus         9 vpntailqennvqi   22 (59)
                      --|+|.|||.+|.+
T Consensus        41 ~S~~atl~Es~v~v   54 (90)
T d2v33a1          41 HSNVATLQEATAKV   54 (90)
T ss_dssp             CCSSEEESBSEEEE
T ss_pred             CCCCEEEEEEEEEE
T ss_conf             78816878627887


No 6  
>d1eiwa_ c.23.3.1 (A:) Hypothetical protein MTH538 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=7.53  E-value=33  Score=14.17  Aligned_cols=14  Identities=43%  Similarity=0.852  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             98878999876429
Q gi|255764475|r   46 RGYCREYIIFLSRL   59 (59)
Q Consensus        46 rgycreyiiflsrl   59 (59)
                      .|-|++|-.|+.|+
T Consensus        11 ~~~~~d~~~~~er~   24 (111)
T d1eiwa_          11 EGEVEDYRVFLERL   24 (111)
T ss_dssp             CCCSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
T ss_conf             68503599999999


No 7  
>d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.69  E-value=89  Score=11.78  Aligned_cols=11  Identities=45%  Similarity=0.806  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99998878999
Q gi|255764475|r   43 TLLRGYCREYI   53 (59)
Q Consensus        43 tllrgycreyi   53 (59)
                      .+|.+|+||.+
T Consensus         7 ~lL~~ftrevL   17 (39)
T d2hwna1           7 ELLQGYTVEVL   17 (39)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 8  
>d1cnt1_ a.26.1.1 (1:) Ciliary neurotrophic factor (CNTF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.35  E-value=94  Score=11.66  Aligned_cols=15  Identities=27%  Similarity=0.286  Sum_probs=9.8

Q ss_pred             HHHHH--HHHHHHHHHC
Q ss_conf             99988--7899987642
Q gi|255764475|r   44 LLRGY--CREYIIFLSR   58 (59)
Q Consensus        44 llrgy--creyiiflsr   58 (59)
                      -+|||  ||||--+++|
T Consensus       145 K~~G~~Vlrey~~w~~r  161 (177)
T d1cnt1_         145 KLWGLKVLQELSQWTVR  161 (177)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHH
T ss_conf             96471129699999999


No 9  
>d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=3.93  E-value=1.2e+02  Score=11.06  Aligned_cols=13  Identities=31%  Similarity=0.508  Sum_probs=9.2

Q ss_pred             CEEEEECCCCHHH
Q ss_conf             5389704772178
Q gi|255764475|r   19 NVQISIPFPMPIV   31 (59)
Q Consensus        19 nvqisipfpmpiv   31 (59)
                      .||.|...|.|.-
T Consensus         1 kVQlSFTLPVp~g   13 (52)
T d1xrsb2           1 KVQLSFTLPLKNN   13 (52)
T ss_dssp             CEEEEEEESSCSS
T ss_pred             CEEEEEEEECCCC
T ss_conf             9038998407998


No 10 
>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]}
Probab=3.52  E-value=1.1e+02  Score=11.21  Aligned_cols=9  Identities=44%  Similarity=1.221  Sum_probs=0.0

Q ss_pred             HHHHHHHHH
Q ss_conf             988789998
Q gi|255764475|r   46 RGYCREYII   54 (59)
Q Consensus        46 rgycreyii   54 (59)
                      .||.|.|.|
T Consensus        23 ~GyaRN~Li   31 (55)
T d2j01i2          23 PGYARNYLL   31 (55)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHHHC
T ss_conf             366888826


Done!