RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|255764475|ref|YP_003084341.1| hypothetical protein
CLIBASIA_03592 [Candidatus Liberibacter asiaticus str. psy62]
         (59 letters)



>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA
          synthetase class II, ligase; 3.23A {Methanococcus
          maripaludis S2} (A:550-614)
          Length = 65

 Score = 23.9 bits (51), Expect = 7.3
 Identities = 3/6 (50%), Positives = 5/6 (83%)

Query: 19 NVQISI 24
          NV++ I
Sbjct: 1  NVEVKI 6


>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA
          synthetase class II, ligase; 3.23A {Methanococcus
          maripaludis S2} (B:550-611)
          Length = 62

 Score = 23.6 bits (50), Expect = 8.9
 Identities = 3/6 (50%), Positives = 5/6 (83%)

Query: 19 NVQISI 24
          NV++ I
Sbjct: 1  NVEVKI 6


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.332    0.146    0.447 

Gapped
Lambda     K      H
   0.267   0.0511    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 440,169
Number of extensions: 13626
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 2
Length of query: 59
Length of database: 4,956,049
Length adjustment: 28
Effective length of query: 31
Effective length of database: 4,009,509
Effective search space: 124294779
Effective search space used: 124294779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.6 bits)