HHsearch alignment for GI: 255764476 and conserved domain: COG3275
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms].
Probab=99.50 E-value=1.8e-11 Score=96.46 Aligned_cols=171 Identities=19% Similarity=0.297 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE-EEEECHHHHHHH
Q ss_conf 9666632258999999999735777889989999999999999999999999999988514983000-233069999999
Q gi|255764476|r 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN-YSTIVLNDLLNE 653 (792)
Q Consensus 575 ~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~-~~~vdl~~~i~~ 653 (792)
T Consensus 371 vnPHFLFNaLNTIs---a~IR~n-----pdkAreL--------------il~LS~yfR~---NL~~~~~~~v~L~kEl~~ 425 (557)
T COG3275 371 VNPHFLFNALNTIS---AVIRRN-----PDKAREL--------------ILYLSTYFRY---NLENNTQEIVTLSKELEH 425 (557)
T ss_pred CCHHHHHHHHHHHH---HHHCCC-----HHHHHHH--------------HHHHHHHHHH---HHCCCCCEEEEHHHHHHH
T ss_conf 37088888888778---886178-----2799999--------------9999999998---734787158655999999
Q ss_pred HHHHHH---HHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCC----CCCEEEEEEEEECCEEEEEEEEC
Q ss_conf 999999---99984896899995698608998789999999999886775388----86889999998799899999978
Q gi|255764476|r 654 VKQSIA---TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS----KGSTVILKAARDNGDFIFSVKNN 726 (792)
Q Consensus 654 ~~~~~~---~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~----~gg~I~i~~~~~~~~v~i~V~D~ 726 (792)
T Consensus 426 v~AYl~IEkARF~-~rL~v~i~id~~l~~~~i-P~f---ilQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l~i~VeDn 500 (557)
T COG3275 426 VNAYLSIEKARFG-DRLDVVIDIDEELRQVQI-PSF---ILQPLVENAIKHGISQLKDTGRVTISVEKEDADLRIEVEDN 500 (557)
T ss_pred HHHHHHHHHHHCC-CCEEEEEECCHHHHHCCC-CHH---HHHHHHHHHHHHCCCCHHCCCCEEEEEEEECCEEEEEEECC
T ss_conf 9999989986448-844799946877753368-616---67788888887536444208817999998088389999418
Q ss_pred CCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCC---EEEEEEECCCCEEEEEEEECC
Q ss_conf 89789778654148837626898888566379999999996198---699997889943999997347
Q gi|255764476|r 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG---HVSISSSDEGVTTINCRIPSK 791 (792)
Q Consensus 727 G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG---~I~v~S~~G~Gttf~v~lP~~ 791 (792)
T Consensus 501 g~li~p~----------------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~ 552 (557)
T COG3275 501 GGLIQPD----------------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQ 552 (557)
T ss_pred CCCCCCC----------------CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEECCC
T ss_conf 8776997----------------788987178899999998648210313786167786899994476