HHsearch alignment for GI: 255764476 and conserved domain: COG5000
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].
Probab=100.00 E-value=2e-41 Score=301.61 Aligned_cols=349 Identities=21% Similarity=0.305 Sum_probs=257.0
Q ss_pred CCEEEEECCHHHHHHHHHH-----HHHH---HHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHH
Q ss_conf 8689994595799999999-----9999---9999999962034328996898488640588878289878943898388
Q gi|255764476|r 410 GGTIWMFENLTVQVDLETK-----YNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481 (792)
Q Consensus 410 Gg~~~~~~DITE~~~le~~-----~~~l---~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~ 481 (792)
T Consensus 338 g~Ls~~FN~M~~eL~~qq~~l~~ak~~~e~rr~f~E~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~~-ls 416 (712)
T COG5000 338 GRLSKAFNKMTEQLSSQQEALERAKDALEQRRRFLEAVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQS-LS 416 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHCHH-HH
T ss_conf 89999999999999999999998788899999889999815850389974787077626017888468706764402-66
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECC-EEEEEEEEEECC-C--CCEEEECCCCHHHHHHHHHHHH
Q ss_conf 98877763025611468899874026544311568999725-038889999705-8--8766312320689999888899
Q gi|255764476|r 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS-DSVLEYSIIPLP-N--AQTMLTFVNVTDSVRAERALTE 557 (792)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~d-G~~~~~~~~pl~-d--g~~l~~~~DIT~~k~~E~aL~e 557 (792)
T Consensus 417 a~ap~~~~vf~~~~a~--------~~~~~~~e--v~~~r~g~~rtl~Vq~t~~~~d~~~gyVvt~DDITdLV~AQRs~AW 486 (712)
T COG5000 417 AIAPELEEVFAEAGAA--------ARTDKRVE--VKLAREGEERTLNVQATREPEDNGNGYVVTFDDITDLVIAQRSAAW 486 (712)
T ss_pred HHHHHHHHHHHHHHHH--------CCCCCCEE--EECCCCCCCEEEEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 4213789999976540--------38774201--0001478741566675321444688569996350899999998789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999966663225899999999973577788998-99--9999999999999999999999998851
Q gi|255764476|r 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQ--SQYVEYISASSTILLNLVNDILDLATVD 634 (792)
Q Consensus 558 ~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~-~q--~e~~~~I~~s~~~l~~li~diLdls~i~ 634 (792)
T Consensus 487 ------------~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP 554 (712)
T COG5000 487 ------------GDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMP 554 (712)
T ss_pred ------------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ------------99999998872499862200289999883741234899999999999999999999999999871489
Q ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCC-------CCCCE
Q ss_conf 49830002330699999999999999998489689999569860899878999999999988677538-------88688
Q gi|255764476|r 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-------SKGST 707 (792)
Q Consensus 635 aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~-------~~gg~ 707 (792)
T Consensus 555 ----~p~~e~~dL~~ll~e~~~L~e--~~~~~i~f~~e~g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~ 628 (712)
T COG5000 555 ----APKLEKSDLRALLKEVSFLYE--IGNDHIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTAL 628 (712)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHH--CCCCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf ----987774229999999999996--26877699753189862532489999999999987199875310134677643
Q ss_pred EEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE-CCCCEEEEE
Q ss_conf 9999998799899999978897897786541488376268988885663799999999961986999978-899439999
Q gi|255764476|r 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINC 786 (792)
Q Consensus 708 I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~-~G~Gttf~v 786 (792)
T Consensus 629 i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~----KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i 704 (712)
T COG5000 629 IRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTRE----KGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRI 704 (712)
T ss_pred EEEEEECCCCEEEEEEECCCCCCCHHHHHHHCCCCEECCC----CCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEE
T ss_conf 8999844798499998108987996786432367142165----666623999999999638827724789999767999
Q ss_pred EEECC
Q ss_conf 97347
Q gi|255764476|r 787 RIPSK 791 (792)
Q Consensus 787 ~lP~~ 791 (792)
T Consensus 705 ~fp~~ 709 (712)
T COG5000 705 KFPLK 709 (712)
T ss_pred ECCCC
T ss_conf 83656