HHsearch alignment for GI: 255764476 and conserved domain: COG5000
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].
Probab=97.95 E-value=0.00071 Score=44.42 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=64.5
Q ss_pred HHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCC------CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9984308959998489808985368885509997896049------9879999989754777664657889999998762
Q gi|255764476|r 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN------PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383 (792)
Q Consensus 310 e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~------p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~~ 383 (792)
T Consensus 374 ~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~~lsa~ap~~~~vf~~~~-------------------a~~~ 434 (712)
T COG5000 374 AVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQSLSAIAPELEEVFAEAG-------------------AAAR 434 (712)
T ss_pred HHHHCCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHH-------------------HHCC
T ss_conf 998158503899747870776260178884687067644026642137899999765-------------------4038
Q ss_pred CCCCCCEEEECCC-CCEEEEEEEECCC---CCEEEEECCHHHHHHHHH
Q ss_conf 4676502688789-8189999735699---868999459579999999
Q gi|255764476|r 384 SSETHKDTWHLPN-GQTLHVIVTSNPR---GGTIWMFENLTVQVDLET 427 (792)
Q Consensus 384 ~~~~~~~~w~l~D-Gr~l~v~~~~~p~---Gg~~~~~~DITE~~~le~ 427 (792)
T Consensus 435 ~~~~~ev~~~r~g~~rtl~Vq~t~~~~d~~~gyVvt~DDITdLV~AQR 482 (712)
T COG5000 435 TDKRVEVKLAREGEERTLNVQATREPEDNGNGYVVTFDDITDLVIAQR 482 (712)
T ss_pred CCCCEEEECCCCCCCEEEEEEEEECCCCCCCCEEEEECCHHHHHHHHH
T ss_conf 774201000147874156667532144468856999635089999999