HHsearch alignment for GI: 255764476 and conserved domain: PRK11073
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional.
Probab=100.00 E-value=0 Score=429.15 Aligned_cols=327 Identities=20% Similarity=0.330 Sum_probs=260.1
Q ss_pred HHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 99999620343289968984886405888782898789438983889887776302561146889987402654431156
Q gi|255764476|r 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515 (792)
Q Consensus 436 q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~ 515 (792)
T Consensus 9 ~~~Il~~~~d~Iiv~D~~g~I~~~N~aa~~l~g~~~~~~~G~~-~~~l~~~~----~~--~~~~~~~~~~~~~~-~~~~~ 80 (348)
T PRK11073 9 AGQILNSLINSILLLDDNLAIHYANPAAQQLLAQSSRKLFGTP-LPELLSYF----SL--NIELMQESLQAGQG-FTDNE 80 (348)
T ss_pred HHHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCCC-HHHHHCCC----CC--CHHHHHHHHHCCCC-CCCCE
T ss_conf 9999986607964998979701283999999785989985996-89984665----30--18999999973897-41323
Q ss_pred EEEEECCEE--EEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899972503--888999970588766312320689999888899999999999999999999666632258999999999
Q gi|255764476|r 516 GTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 (792)
Q Consensus 516 ~~~~~~dG~--~~~~~~~pl~dg~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~l 593 (792)
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~di~~~k~l~~e~~~~~~~-----~~~~e~~~~iaHelrnPL~~I~g~~~l 154 (348)
T PRK11073 81 VTL-VIDGRSHILSLTAQRLPEGMILLEMAPMDNQRRLSQEQLQHAQQ-----VAARDLVRGLAHEIKNPLGGLRGAAQL 154 (348)
T ss_pred EEE-EECCEEEEEEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 999-98996999999999825868999999627999999999999999-----999999984018747857999999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 73577788998999999999999999999999999998851498300023306999999999999999984896899995
Q gi|255764476|r 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 (792)
Q Consensus 594 L~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~ 673 (792)
T Consensus 155 l~~~~---~d~~~~e~~~~i~~~~~rl~~li~~ll~~~~~~~------~~~~~l~~~~~~~~~~~~~~~-~~~i~i~~~~ 224 (348)
T PRK11073 155 LSKAL---PDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HITESIHKVAERVVQLVSLEL-PDNVRLIRDY 224 (348)
T ss_pred HHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEE
T ss_conf 97417---9989999999999999999999999864412688------775479999999999999856-5780999960
Q ss_pred CCCCCEEEECHHHHHHHHHHHHHHHHHC-CCCCCEEEEEEEEEC----------CEEEEEEEECCCCCCHHHHHHHCCCC
Q ss_conf 6986089987899999999998867753-888688999999879----------98999999788978977865414883
Q gi|255764476|r 674 DGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDN----------GDFIFSVKNNGSSIPEDMCKSVFNRF 742 (792)
Q Consensus 674 ~~~~~~v~~D~~rL~QVl~NLl~NAik~-~~~gg~I~i~~~~~~----------~~v~i~V~D~G~GI~~e~~~riF~~F 742 (792)
T Consensus 225 ~~~~~~i~~d~~~l~qVl~NLl~NAik~~~~~~g~i~i~~~~~~~~~i~~~~~~~~~~i~V~D~G~GI~~e~~~~iF~pf 304 (348)
T PRK11073 225 DPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPM 304 (348)
T ss_pred CCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHCCCC
T ss_conf 78887264468788999999999999983669977999996433322145323304899999908878989999737783
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf 7626898888566379999999996198699997889943999997347
Q gi|255764476|r 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792)
Q Consensus 743 ~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792)
T Consensus 305 ~ttk~----~GtGLGL~ivk~ive~hgG~I~v~S~~g~-t~F~i~lPl~ 348 (348)
T PRK11073 305 VSGRE----GGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPIR 348 (348)
T ss_pred CCCCC----CCCCHHHHHHHHHHHHCCCEEEEEEECCE-EEEEEEEEEC
T ss_conf 67998----98177899999999986998999982891-9999999639