HHsearch alignment for GI: 255764476 and conserved domain: PRK11086
>PRK11086 sensory histidine kinase DcuS; Provisional.
Probab=100.00 E-value=0 Score=347.76 Aligned_cols=306 Identities=16% Similarity=0.248 Sum_probs=216.4
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCH--HHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 9999999996203432899689848864058887828987--89438983889887776302561146889987402654
Q gi|255764476|r 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE--NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509 (792)
Q Consensus 432 l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 509 (792)
T Consensus 219 l~~er~aiL~s~~eGVIavD~~g~I~l~N~~A~~ll~~~~~~~~~~g~~-~~~~~-------~~~----~l~~vl~~~~- 285 (541)
T PRK11086 219 LFEQRQAMLQSIKEGVIAVDDRGEVTLINDEAQRLFYKKGQEDDPLSTD-VHSWS-------PVS----RLKEVLRTGT- 285 (541)
T ss_pred HHHHHHHHHHHHHCEEEEECCCCEEEEECHHHHHHHCCCCCCCCCCCCC-HHHHC-------CCH----HHHHHHHCCC-
T ss_conf 9999999985300169997589879998499998743358874312551-77727-------545----5999984488-
Q ss_pred CCCEEEEEEEECCEEEEEEEEEECCC-C---CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43115689997250388899997058-8---7663123206899998888999999999999999999996666322589
Q gi|255764476|r 510 ERKSLQGTLELLSDSVLEYSIIPLPN-A---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 (792)
Q Consensus 510 ~r~~~~~~~~~~dG~~~~~~~~pl~d-g---~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt 585 (792)
T Consensus 286 ---~~~d~e~~~~~~~l~~~~~pi~~~g~~~G~V~~~rD~TE~~~L~~~L~~v--------~~~~e~Lra~sHE~~n~L~ 354 (541)
T PRK11086 286 ---PRRDEEININGRLLLTNTVPVRVNGEIIGAISTFRDKTEVRQLAQRLDGV--------VNYADALRAQSHEFMNKLH 354 (541)
T ss_pred ---CCCEEEEEECCEEEEEEEEEEEECCEEEEEEEEEECHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_conf ---53107999899899999777654890689999984427899999999999--------9999998761166640579
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999735777889989999999999999999999999999988514983000233069999999999999999848
Q gi|255764476|r 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 (792)
Q Consensus 586 ~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~ 665 (792)
T Consensus 355 ~I~Gll~l~~~-------d~~~~~i---~~~~~~~~~~~~~l~~~i~-----------~----p~la~~Llgk~~~a~E~ 409 (541)
T PRK11086 355 VILGLLHLKSY-------DQLEDYI---LKTANNYQEEIGSLLGKIK-----------S----PVIAGFLLGKISRAREL 409 (541)
T ss_pred HHHHHHHHCHH-------HHHHHHH---HHHHHHHHHHHHHHHHHCC-----------C----HHHHHHHHHHHHHHHHC
T ss_conf 99888864308-------9999999---9999999999999998611-----------6----88899999889999966
Q ss_pred CCEEEEEECCCCCEEEECHH---HHHHHHHHHHHHHHHCC--CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCC
Q ss_conf 96899995698608998789---99999999988677538--88688999999879989999997889789778654148
Q gi|255764476|r 666 NIRIKVISDGKLGSFVADRQ---RLLQIFSKILSNAMDFS--SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 (792)
Q Consensus 666 ~i~l~~~~~~~~~~v~~D~~---rL~QVl~NLl~NAik~~--~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~ 740 (792)
T Consensus 410 gi~L~i~~~~~l~~~-~~~~~~~~l~tVlgNLidNAi~A~~~~~~g~V~v~l~~~~~~l~i~V~D~G~GI~~e~~~~IFe 488 (541)
T PRK11086 410 GITLIISEDSQLPDS-DDEDQVHELITILGNLIENALEAVSNEEGGEISVSLHYRHGWLHIEVSDDGPGIAPEEIEAIFD 488 (541)
T ss_pred CCEEEEECCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCC
T ss_conf 985997067767788-8646665799999999999999731689967999999889989999997798859779988717
Q ss_pred CCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf 837626898888566379999999996198699997889943999997347
Q gi|255764476|r 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792)
Q Consensus 741 ~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792)
T Consensus 489 rg~StK----~~g~GLGLaIvk~iVe~~gG~I~veS~~g~GT~Fti~LP~~ 535 (541)
T PRK11086 489 KGYSTK----GSNRGVGLYLVKQSVENLGGSIAVESEPGIGTQFFVQIPWD 535 (541)
T ss_pred CCCCCC----CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCC
T ss_conf 987418----99911039999999998599899996699937999996068