HHsearch alignment for GI: 255764476 and conserved domain: PRK11086

>PRK11086 sensory histidine kinase DcuS; Provisional.
Probab=97.33  E-value=0.013  Score=35.71  Aligned_cols=107  Identities=15%  Similarity=0.158  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCH--HHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             899999984308959998489808985368885509997--896049987999998975477766465788999999876
Q gi|255764476|r  305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL--AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY  382 (792)
Q Consensus       305 Lrr~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~--~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~  382 (792)
T Consensus       220 ~~er~aiL~s~~eGVIavD~~g~I~l~N~~A~~ll~~~~~~~~~~g~~~~~-~---------~~~~--------~l~~vl  281 (541)
T PRK11086        220 FEQRQAMLQSIKEGVIAVDDRGEVTLINDEAQRLFYKKGQEDDPLSTDVHS-W---------SPVS--------RLKEVL  281 (541)
T ss_pred             HHHHHHHHHHHHCEEEEECCCCEEEEECHHHHHHHCCCCCCCCCCCCCHHH-H---------CCCH--------HHHHHH
T ss_conf             999999985300169997589879998499998743358874312551777-2---------7545--------599998


Q ss_pred             HCCCCCCEEEECCCCCEEEEEEEECC-CC---CEEEEECCHHHHHHHHHHH
Q ss_conf             24676502688789818999973569-98---6899945957999999999
Q gi|255764476|r  383 KSSETHKDTWHLPNGQTLHVIVTSNP-RG---GTIWMFENLTVQVDLETKY  429 (792)
Q Consensus       383 ~~~~~~~~~w~l~DGr~l~v~~~~~p-~G---g~~~~~~DITE~~~le~~~  429 (792)
T Consensus       282 ~~~~~~~d~e~~~~~~~l~~~~~pi~~~g~~~G~V~~~rD~TE~~~L~~~L  332 (541)
T PRK11086        282 RTGTPRRDEEININGRLLLTNTVPVRVNGEIIGAISTFRDKTEVRQLAQRL  332 (541)
T ss_pred             HCCCCCCEEEEEECCEEEEEEEEEEEECCEEEEEEEEEECHHHHHHHHHHH
T ss_conf             448853107999899899999777654890689999984427899999999