HHsearch alignment for GI: 255764476 and conserved domain: PRK11086
>PRK11086 sensory histidine kinase DcuS; Provisional.
Probab=97.33 E-value=0.013 Score=35.71 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=58.9
Q ss_pred HHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCH--HHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 899999984308959998489808985368885509997--896049987999998975477766465788999999876
Q gi|255764476|r 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL--AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382 (792)
Q Consensus 305 Lrr~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~--~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~ 382 (792)
T Consensus 220 ~~er~aiL~s~~eGVIavD~~g~I~l~N~~A~~ll~~~~~~~~~~g~~~~~-~---------~~~~--------~l~~vl 281 (541)
T PRK11086 220 FEQRQAMLQSIKEGVIAVDDRGEVTLINDEAQRLFYKKGQEDDPLSTDVHS-W---------SPVS--------RLKEVL 281 (541)
T ss_pred HHHHHHHHHHHHCEEEEECCCCEEEEECHHHHHHHCCCCCCCCCCCCCHHH-H---------CCCH--------HHHHHH
T ss_conf 999999985300169997589879998499998743358874312551777-2---------7545--------599998
Q ss_pred HCCCCCCEEEECCCCCEEEEEEEECC-CC---CEEEEECCHHHHHHHHHHH
Q ss_conf 24676502688789818999973569-98---6899945957999999999
Q gi|255764476|r 383 KSSETHKDTWHLPNGQTLHVIVTSNP-RG---GTIWMFENLTVQVDLETKY 429 (792)
Q Consensus 383 ~~~~~~~~~w~l~DGr~l~v~~~~~p-~G---g~~~~~~DITE~~~le~~~ 429 (792)
T Consensus 282 ~~~~~~~d~e~~~~~~~l~~~~~pi~~~g~~~G~V~~~rD~TE~~~L~~~L 332 (541)
T PRK11086 282 RTGTPRRDEEININGRLLLTNTVPVRVNGEIIGAISTFRDKTEVRQLAQRL 332 (541)
T ss_pred HCCCCCCEEEEEECCEEEEEEEEEEEECCEEEEEEEEEECHHHHHHHHHHH
T ss_conf 448853107999899899999777654890689999984427899999999