HHsearch alignment for GI: 255764476 and conserved domain: PRK13558

>PRK13558 bacterio-opsin activator; Provisional.
Probab=98.94  E-value=5.2e-08  Score=72.75  Aligned_cols=119  Identities=14%  Similarity=0.167  Sum_probs=90.3

Q ss_pred             HHHHHHHHHCCCCEEEEC---CCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCC-----HHHHHHHHHHCCCCCEEEE
Q ss_conf             999999851680058981---59928985257898736778775661015853389-----6789999861257870345
Q gi|255764476|r  193 SVFKVLFDSLDFLVWHRD---QAGDILWANISYKKNTETEGIVFQKAIGESRKLFK-----EEIKKRMISSSALEKNFCE  264 (792)
Q Consensus       193 ~~lr~llda~P~~vw~~D---~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~-----~~~~~~~~~~~~~~~~~~~  264 (792)
T Consensus       158 ~~~~ra~d~a~v~i~~a~~~~p~~~i~~~n~a~~eit---Gy~~~e~~g~~~r~lq~~~~~~e~~~~~~~ai~~~~~~~v  234 (674)
T PRK13558        158 RLKEQALDEAPIGITISDATDPEEPIIYINDSFEDIT---GYSPDEVVGANHRFLQGPKTNEDRVAEFWTAITEDHDTQV  234 (674)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHC---CCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf             9887566405725998468888874388601236531---8981786497401210688880579999999755886334


Q ss_pred             EEE-EEECCEEEEEEEEEEECCC--C----EEEEEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf             788-8656907899999763289--5----299983045899988788999999843
Q gi|255764476|r  265 TVS-TLEHGNNKSYKIVRVLNSF--G----EAGIAIDVSKEITVNDQLTHTYEILHN  314 (792)
Q Consensus       265 ~~~-~~~~G~rr~~~v~~~~~~~--G----~~Gia~DITErk~ae~aLrr~~e~Ld~  314 (792)
T Consensus       235 e~r~~r~dG~~~w~~~~i~pi~Dedg~v~~~Vg~~~DiteRke~E~~L~~~~~~l~~  291 (674)
T PRK13558        235 VLRNYRRDGSLFWNQVDISPIYDEDGTVSHYVGFQMDVSERMAAQQELQGERQSLDR  291 (674)
T ss_pred             EEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             533314688378741245521057885899986214477889999999986889999