HHsearch alignment for GI: 255764476 and conserved domain: PRK13558
>PRK13558 bacterio-opsin activator; Provisional.
Probab=98.94 E-value=5.2e-08 Score=72.75 Aligned_cols=119 Identities=14% Similarity=0.167 Sum_probs=90.3
Q ss_pred HHHHHHHHHCCCCEEEEC---CCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCCC-----HHHHHHHHHHCCCCCEEEE
Q ss_conf 999999851680058981---59928985257898736778775661015853389-----6789999861257870345
Q gi|255764476|r 193 SVFKVLFDSLDFLVWHRD---QAGDILWANISYKKNTETEGIVFQKAIGESRKLFK-----EEIKKRMISSSALEKNFCE 264 (792)
Q Consensus 193 ~~lr~llda~P~~vw~~D---~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll~-----~~~~~~~~~~~~~~~~~~~ 264 (792)
T Consensus 158 ~~~~ra~d~a~v~i~~a~~~~p~~~i~~~n~a~~eit---Gy~~~e~~g~~~r~lq~~~~~~e~~~~~~~ai~~~~~~~v 234 (674)
T PRK13558 158 RLKEQALDEAPIGITISDATDPEEPIIYINDSFEDIT---GYSPDEVVGANHRFLQGPKTNEDRVAEFWTAITEDHDTQV 234 (674)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHC---CCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 9887566405725998468888874388601236531---8981786497401210688880579999999755886334
Q ss_pred EEE-EEECCEEEEEEEEEEECCC--C----EEEEEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 788-8656907899999763289--5----299983045899988788999999843
Q gi|255764476|r 265 TVS-TLEHGNNKSYKIVRVLNSF--G----EAGIAIDVSKEITVNDQLTHTYEILHN 314 (792)
Q Consensus 265 ~~~-~~~~G~rr~~~v~~~~~~~--G----~~Gia~DITErk~ae~aLrr~~e~Ld~ 314 (792)
T Consensus 235 e~r~~r~dG~~~w~~~~i~pi~Dedg~v~~~Vg~~~DiteRke~E~~L~~~~~~l~~ 291 (674)
T PRK13558 235 VLRNYRRDGSLFWNQVDISPIYDEDGTVSHYVGFQMDVSERMAAQQELQGERQSLDR 291 (674)
T ss_pred EEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 533314688378741245521057885899986214477889999999986889999