HHsearch alignment for GI: 255764476 and conserved domain: TIGR01924

>TIGR01924 rsbW_low_gc anti-sigma B factor; InterPro: IPR010193 This entry describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter . RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex . Low ATP level or environmental stress causes the dephosphorylation of RsbV .; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0045892 negative regulation of transcription DNA-dependent.
Probab=97.00  E-value=0.0026  Score=40.54  Aligned_cols=97  Identities=18%  Similarity=0.227  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHCCC---CC-CEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHH
Q ss_conf             99999999886775388---86-889999998799899999978897897786541488376268988885663799999
Q gi|255764476|r  687 LLQIFSKILSNAMDFSS---KG-STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE  762 (792)
Q Consensus       687 L~QVl~NLl~NAik~~~---~g-g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~  762 (792)
T Consensus        44 ~KIAVSEA~TN~V~HAYke~~nvG~~~i~F~iyEDklev~vsD~G~SFD~d~~k~~lGPyd~~~~i~~L~eGGLGLFLie  123 (161)
T TIGR01924        44 LKIAVSEACTNAVKHAYKEEENVGEISIEFEIYEDKLEVIVSDEGDSFDLDTKKQELGPYDKSEDIDQLREGGLGLFLIE  123 (161)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHH
T ss_conf             67766555303311223089836789988878875789998207864111002532589795787543201771366451


Q ss_pred             HHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf             9999619869999788994399999
Q gi|255764476|r  763 SFINLHGGHVSISSSDEGVTTINCR  787 (792)
Q Consensus       763 ~iVe~hgG~I~v~S~~G~Gttf~v~  787 (792)
T Consensus       124 tLMD----~V~~~~~sGV~v~MTKY  144 (161)
T TIGR01924       124 TLMD----EVKVYEDSGVTVAMTKY  144 (161)
T ss_pred             CCCC----EEEEEECCCEEEEEEEE
T ss_conf             0376----16998328608988642