HHsearch alignment for GI: 255764476 and conserved domain: TIGR01925
>TIGR01925 spIIAB anti-sigma F factor; InterPro: IPR010194 This entry describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter . SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex . The SpoIIE phosphatase dephosphorylates SpoIIAA.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0030435 sporulation, 0045892 negative regulation of transcription DNA-dependent.
Probab=98.61 E-value=1.3e-07 Score=70.00 Aligned_cols=104 Identities=21% Similarity=0.358 Sum_probs=85.0
Q ss_pred EECCCCCEEEECHHHHHHHHHHHHHHHHH--CC-CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCC
Q ss_conf 95698608998789999999999886775--38-8868899999987998999999788978977865414883762689
Q gi|255764476|r 672 ISDGKLGSFVADRQRLLQIFSKILSNAMD--FS-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 (792)
Q Consensus 672 ~~~~~~~~v~~D~~rL~QVl~NLl~NAik--~~-~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~ 748 (792)
T Consensus 29 ~LDPT~~----El~diK~~VSEAVTNAIIHGYE~~~~~~V~I~~~~~d~~~~~~v~D~G~GI--~~lE~A~~PLyTskPe 102 (137)
T TIGR01925 29 QLDPTLE----ELTDIKTAVSEAVTNAIIHGYEENKEGVVIISATIEDDEVSITVRDEGIGI--ENLEEAREPLYTSKPE 102 (137)
T ss_pred HCCCCHH----HHHHHHHHHHHHHHCCEEECEEECCCCEEEEEEEEECCEEEEEEEECCCCH--HHHHHHCCCCCCCCCC
T ss_conf 4287544----455554333223212053145637997789999960548999986467572--3378532664579987
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf 888856637999999999619869999788994399999
Q gi|255764476|r 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 (792)
Q Consensus 749 ~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~ 787 (792)
T Consensus 103 LE--RSGMGFTvME~FMD----~~~v~S~~~~GT~I~~~ 135 (137)
T TIGR01925 103 LE--RSGMGFTVMESFMD----DVEVDSEKEKGTKIILK 135 (137)
T ss_pred CC--CCCCCEEEECCCCC----CEEEEECCCCCCEEEEE
T ss_conf 22--06786012111245----12686238998468875