HHsearch alignment for GI: 255764476 and conserved domain: TIGR02040

>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=98.81  E-value=2.3e-07  Score=68.32  Aligned_cols=266  Identities=16%  Similarity=0.150  Sum_probs=141.4

Q ss_pred             HHHCCCCEEEEECCCCCCCEEECCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCE-EEEE--E-ECCCC
Q ss_conf             860699789998179970014134123218983202344432118946789899999999853965-8999--9-86897
Q gi|255764476|r   75 LLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS-FDLV--A-ETQND  150 (792)
Q Consensus        75 ll~~~~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~l~f~~wl~p~~a~~l~~ai~~l~~~g~~-f~l~--~-~t~~g  150 (792)
T Consensus         1 l~~~~~Dv~L~~d~~Gvvre~~~~~~~~s~~~~~~W~G~~w~ei~~~es~~k~~~~l~~a~~~g~~a~r~~~~~~~~P~~   80 (453)
T TIGR02040         1 LLEAAADVTLLLDAEGVVREVALSNDELSAEALSEWLGRRWEEIVTEESKEKVEALLSEAKRTGVGAVRVELNRFVLPSD   80 (453)
T ss_pred             CCCCCCCCEEEECCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
T ss_conf             97764770355517870776442885524141302458844441357789999999971468888577776654117999


Q ss_pred             E-----EEE-----EEEEEECCEEEEE-EEECHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCC
Q ss_conf             2-----999-----8304557548998-7401068999999999----999999999999999851680058981-5992
Q gi|255764476|r  151 C-----AIK-----IEGRVSGSCAFLR-ILSLDGIYSELAETTL----KCKKLSNHISVFKVLFDSLDFLVWHRD-QAGD  214 (792)
Q Consensus       151 ~-----~i~-----~~Gr~~g~~a~~r-~~d~s~~~~~~ael~~----~~~~L~~~~~~lr~llda~P~~vw~~D-~dGr  214 (792)
T Consensus        81 ~ElP~~F~~~~L~~sdGk~~~vLa~GrdLr~vA~lqq~lv~AQ~AmErDYW~lR~~EtRYR~ll~~s~davllv~~st~r  160 (453)
T TIGR02040        81 LELPMEFVLVRLGASDGKDEGVLALGRDLRAVAELQQRLVEAQQAMERDYWKLREMETRYRLLLEVSSDAVLLVDVSTGR  160 (453)
T ss_pred             CCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf             72440346761678788887358884652478999999999987888879998667544433541148867998536534


Q ss_pred             EEEECHHHHHHHCCCCCCHHHHHCCCCC-CCCHHHHHHHH----HHCCCCCEEEEEEEEEECCEEEEE-EEEEEECCCCE
Q ss_conf             8985257898736778775661015853-38967899998----612578703457888656907899-99976328952
Q gi|255764476|r  215 ILWANISYKKNTETEGIVFQKAIGESRK-LFKEEIKKRMI----SSSALEKNFCETVSTLEHGNNKSY-KIVRVLNSFGE  288 (792)
Q Consensus       215 i~~vN~A~~~~~e~~~~~~~~~i~~~~~-ll~~~~~~~~~----~~~~~~~~~~~~~~~~~~G~rr~~-~v~~~~~~~G~  288 (792)
T Consensus       161 ileaN~~A~~lLg~~~~~rd~LvG~~~~~e~~~~~~~~l~~~l~~~~atg~A~~~~i~l-~~~~~~~~v~~s~~r~~~-~  238 (453)
T TIGR02040       161 ILEANSAAAALLGAEGQRRDSLVGREFPQELEEREREELELLLREVRATGKAAEVRILL-AESRKELLVVVSLFRQDS-E  238 (453)
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE-CCCCCCEEEEEEEEECCC-C
T ss_conf             77867999998502677501231113431466454368999998643015778717874-578873178877640236-6


Q ss_pred             EEEEE---EHHHHHHHHHHHH---HHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCC
Q ss_conf             99983---0458999887889---999998430895999848980898536888550999
Q gi|255764476|r  289 AGIAI---DVSKEITVNDQLT---HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID  342 (792)
Q Consensus       289 ~Gia~---DITErk~ae~aLr---r~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~  342 (792)
T Consensus       239 ~~fL~~l~~~~~~~~~~~~~s~~sml~~l~~~~pDaiv~~D~~G~i~~aN~aFl~l~~~s  298 (453)
T TIGR02040       239 SLFLVRLSPAGASAAVGDVLSENSMLAKLVEEAPDAIVVVDADGRIKRANEAFLELVEVS  298 (453)
T ss_pred             CHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf             410113031124467777667427899999742987999778873288889999898717