HHsearch alignment for GI: 255764476 and conserved domain: TIGR02040
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=98.81 E-value=2.3e-07 Score=68.32 Aligned_cols=266 Identities=16% Similarity=0.150 Sum_probs=141.4
Q ss_pred HHHCCCCEEEEECCCCCCCEEECCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCE-EEEE--E-ECCCC
Q ss_conf 860699789998179970014134123218983202344432118946789899999999853965-8999--9-86897
Q gi|255764476|r 75 LLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS-FDLV--A-ETQND 150 (792)
Q Consensus 75 ll~~~~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~l~f~~wl~p~~a~~l~~ai~~l~~~g~~-f~l~--~-~t~~g 150 (792)
T Consensus 1 l~~~~~Dv~L~~d~~Gvvre~~~~~~~~s~~~~~~W~G~~w~ei~~~es~~k~~~~l~~a~~~g~~a~r~~~~~~~~P~~ 80 (453)
T TIGR02040 1 LLEAAADVTLLLDAEGVVREVALSNDELSAEALSEWLGRRWEEIVTEESKEKVEALLSEAKRTGVGAVRVELNRFVLPSD 80 (453)
T ss_pred CCCCCCCCEEEECCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
T ss_conf 97764770355517870776442885524141302458844441357789999999971468888577776654117999
Q ss_pred E-----EEE-----EEEEEECCEEEEE-EEECHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCC
Q ss_conf 2-----999-----8304557548998-7401068999999999----999999999999999851680058981-5992
Q gi|255764476|r 151 C-----AIK-----IEGRVSGSCAFLR-ILSLDGIYSELAETTL----KCKKLSNHISVFKVLFDSLDFLVWHRD-QAGD 214 (792)
Q Consensus 151 ~-----~i~-----~~Gr~~g~~a~~r-~~d~s~~~~~~ael~~----~~~~L~~~~~~lr~llda~P~~vw~~D-~dGr 214 (792)
T Consensus 81 ~ElP~~F~~~~L~~sdGk~~~vLa~GrdLr~vA~lqq~lv~AQ~AmErDYW~lR~~EtRYR~ll~~s~davllv~~st~r 160 (453)
T TIGR02040 81 LELPMEFVLVRLGASDGKDEGVLALGRDLRAVAELQQRLVEAQQAMERDYWKLREMETRYRLLLEVSSDAVLLVDVSTGR 160 (453)
T ss_pred CCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf 72440346761678788887358884652478999999999987888879998667544433541148867998536534
Q ss_pred EEEECHHHHHHHCCCCCCHHHHHCCCCC-CCCHHHHHHHH----HHCCCCCEEEEEEEEEECCEEEEE-EEEEEECCCCE
Q ss_conf 8985257898736778775661015853-38967899998----612578703457888656907899-99976328952
Q gi|255764476|r 215 ILWANISYKKNTETEGIVFQKAIGESRK-LFKEEIKKRMI----SSSALEKNFCETVSTLEHGNNKSY-KIVRVLNSFGE 288 (792)
Q Consensus 215 i~~vN~A~~~~~e~~~~~~~~~i~~~~~-ll~~~~~~~~~----~~~~~~~~~~~~~~~~~~G~rr~~-~v~~~~~~~G~ 288 (792)
T Consensus 161 ileaN~~A~~lLg~~~~~rd~LvG~~~~~e~~~~~~~~l~~~l~~~~atg~A~~~~i~l-~~~~~~~~v~~s~~r~~~-~ 238 (453)
T TIGR02040 161 ILEANSAAAALLGAEGQRRDSLVGREFPQELEEREREELELLLREVRATGKAAEVRILL-AESRKELLVVVSLFRQDS-E 238 (453)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE-CCCCCCEEEEEEEEECCC-C
T ss_conf 77867999998502677501231113431466454368999998643015778717874-578873178877640236-6
Q ss_pred EEEEE---EHHHHHHHHHHHH---HHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCC
Q ss_conf 99983---0458999887889---999998430895999848980898536888550999
Q gi|255764476|r 289 AGIAI---DVSKEITVNDQLT---HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342 (792)
Q Consensus 289 ~Gia~---DITErk~ae~aLr---r~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~ 342 (792)
T Consensus 239 ~~fL~~l~~~~~~~~~~~~~s~~sml~~l~~~~pDaiv~~D~~G~i~~aN~aFl~l~~~s 298 (453)
T TIGR02040 239 SLFLVRLSPAGASAAVGDVLSENSMLAKLVEEAPDAIVVVDADGRIKRANEAFLELVEVS 298 (453)
T ss_pred CHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 410113031124467777667427899999742987999778873288889999898717