HHsearch alignment for GI: 255764476 and conserved domain: TIGR02938
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=100.00 E-value=5.6e-45 Score=326.03 Aligned_cols=465 Identities=17% Similarity=0.252 Sum_probs=323.9
Q ss_pred HHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCCCC-----CHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 9999998516800589815992898525789873677877566101585338-----96789999861257870345788
Q gi|255764476|r 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF-----KEEIKKRMISSSALEKNFCETVS 267 (792)
Q Consensus 193 ~~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~ll-----~~~~~~~~~~~~~~~~~~~~~~~ 267 (792)
T Consensus 4 e~~RqtVdqAp~AISITDlKANILyaN~AF~~iT---GY~~eE~iGkNES~LSn~tTPpeVYQaLWg~la~qkPW~G~Ll 80 (496)
T TIGR02938 4 ELYRQTVDQAPVAISITDLKANILYANDAFSEIT---GYAKEEVIGKNESVLSNRTTPPEVYQALWGSLAEQKPWAGKLL 80 (496)
T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 5688866228803643101456999956632155---8656211125540126858871799999988630589865100
Q ss_pred E-EECCEEEEEEEEEEECCC--C----EEEEEEEHHHHHHHHHHHHHHHH----HHHHCCCCEEEECCCCEEEEECHHHH
Q ss_conf 8-656907899999763289--5----29998304589998878899999----98430895999848980898536888
Q gi|255764476|r 268 T-LEHGNNKSYKIVRVLNSF--G----EAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFV 336 (792)
Q Consensus 268 ~-~~~G~rr~~~v~~~~~~~--G----~~Gia~DITErk~ae~aLrr~~e----~Ld~l~~~v~ifd~~~rl~~~N~a~~ 336 (792)
T Consensus 81 NRrkDg~lYLAeLtvaPvlneaGeT~hflGMHRd~tElh~Leq~V~nQ~l~iE~VV~aaPva~vllD~~gRv~LdN~~yk 160 (496)
T TIGR02938 81 NRRKDGELYLAELTVAPVLNEAGETTHFLGMHRDVTELHRLEQRVANQKLLIEAVVDAAPVAAVLLDEQGRVVLDNLEYK 160 (496)
T ss_pred CCCCCCCHHHHHHCCCCHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECCHHHH
T ss_conf 00116530022202020001468815873254543578899888976467899998786541000569986881677688
Q ss_pred HHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEE
Q ss_conf 55099978960499879999989754777664657889999998762467650268878981899997356998689994
Q gi|255764476|r 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416 (792)
Q Consensus 337 ~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~~~~~~~~~~w~l~DGr~l~v~~~~~p~Gg~~~~~ 416 (792)
T Consensus 161 ~La---~DL~v~epa~-~~l~lLre~-----------~~e~----------~~~~~~q--~~afs--------------- 198 (496)
T TIGR02938 161 KLA---SDLKVEEPAE-LLLKLLREE-----------LAED----------LEELENQ--EKAFS--------------- 198 (496)
T ss_pred HHH---HHCCCCCCHH-HHHHHHHHH-----------HHHH----------HHHHCCC--CCEEC---------------
T ss_conf 787---4214144179-999985087-----------6527----------8652021--10101---------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCC-CCHHHHHHHHHHHCCCCH
Q ss_conf 5957999999999999999999996203432899689848864058887828987894389-838898877763025611
Q gi|255764476|r 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG-THIRNIAATCSRYYNESD 495 (792)
Q Consensus 417 ~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~-~~~~~~~~~~~~~~~~~~ 495 (792)
T Consensus 199 -n------~E---------------------~rfD~g---------------------gGR~~RW--------------- 214 (496)
T TIGR02938 199 -N------KE---------------------LRFDRG---------------------GGRSARW--------------- 214 (496)
T ss_pred -C------CE---------------------EEEECC---------------------CCCCCCC---------------
T ss_conf -5------40---------------------354168---------------------8788501---------------
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEE-EECCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHH-HHH----HHHHHHH
Q ss_conf 46889987402654431156899-97250388899997058876631232068999988889999-999----9999999
Q gi|255764476|r 496 GWDLFAAIITSFDDERKSLQGTL-ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EAL----RKADEIK 569 (792)
Q Consensus 496 ~~~~~~~~i~~~~~~r~~~~~~~-~~~dG~~~~~~~~pl~dg~~l~~~~DIT~~k~~E~aL~e~~-eal----e~a~~lk 569 (792)
T Consensus 215 ----------------lSc~g~~i~~e~~~-ad~fF~~~e~~yLLLti~Dis~lr~~Qe~~Rl~aLqAlmAEEE~le~~r 277 (496)
T TIGR02938 215 ----------------LSCAGRVIRIEEDS-ADSFFAAAEKRYLLLTIDDISELRKKQERARLSALQALMAEEEKLEALR 277 (496)
T ss_pred ----------------EEECCCEEEEECCC-CCEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------------02023235311364-0115616899830566364788899999999999899998998888876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHH
Q ss_conf 999999666632258999999999735777-8899899999999999999999999999999885149830002330699
Q gi|255764476|r 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKL-GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 (792)
Q Consensus 570 ~~F~~~vSHELrtPLt~I~G~a~lL~~~~~-g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~ 648 (792)
T Consensus 278 Etl~A-AIhrl~gP~NlisaA~~~L~RRlGD~AGn~a~~~~lqqa~~ag~e~~e~------L~~~IP~s~~e~~~pVNlN 350 (496)
T TIGR02938 278 ETLSA-AIHRLQGPLNLISAAISVLERRLGDDAGNDAVAALLQQALAAGREALEA------LEKVIPQSDAEAVVPVNLN 350 (496)
T ss_pred HHHHH-HHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH------HCCCCCCCCCCCCCCCCHH
T ss_conf 66888-8888528710788999986320583237979999999998863999997------5057887724454664277
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCC----EEEEEEEEECCEEEEEEE
Q ss_conf 9999999999999984896899995698608998789999999999886775388868----899999987998999999
Q gi|255764476|r 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVK 724 (792)
Q Consensus 649 ~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg----~I~i~~~~~~~~v~i~V~ 724 (792)
T Consensus 351 ~~lrdvi~l~T~rLLA~GIvVdW~Pa~~LP~~~G~e~~lRslfK~LvdNAIeaM~~~~~~RREL~i~t~~~~~li~~~i~ 430 (496)
T TIGR02938 351 QVLRDVITLLTERLLAAGIVVDWQPAAVLPAVLGSESRLRSLFKALVDNAIEAMAQKGVKRRELSILTAVEDDLIRVEIE 430 (496)
T ss_pred HHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEE
T ss_conf 89999998610557557541516561016222078525789999999999998530784102310102230856899997
Q ss_pred ECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 788978977865414883762689888856637999999999619869999788994399999734
Q gi|255764476|r 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 (792)
Q Consensus 725 D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~ 790 (792)
T Consensus 431 DsGPGIP~dlr~kvFEPFFttK~~~Gr~h~G~GL~vaqeiVa~H~G~i~~D~dy~eGCri~vef~~ 496 (496)
T TIGR02938 431 DSGPGIPADLRLKVFEPFFTTKASSGRKHVGMGLAVAQEIVAKHAGLIDVDDDYREGCRIVVEFEV 496 (496)
T ss_pred ECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEEEECC
T ss_conf 358798724422523673226888778423346268899975049879736888777357776239