HHsearch alignment for GI: 255764476 and conserved domain: cd00130
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=97.23 E-value=0.0031 Score=40.04 Aligned_cols=36 Identities=33% Similarity=0.436 Sum_probs=19.0
Q ss_pred CCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCC
Q ss_conf 343289968984886405888782898789438983
Q gi|255764476|r 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 (792)
Q Consensus 444 ~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~ 479 (792)
T Consensus 2 ~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~ 37 (103)
T cd00130 2 PDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSL 37 (103)
T ss_pred CEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCH
T ss_conf 628999979898999988999987988789169965