HHsearch alignment for GI: 255764476 and conserved domain: cd00130
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=96.94 E-value=0.011 Score=36.36 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=27.6
Q ss_pred CCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCH
Q ss_conf 08959998489808985368885509997896049987
Q gi|255764476|r 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352 (792)
Q Consensus 315 l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~ 352 (792)
T Consensus 1 ~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~ 38 (103)
T cd00130 1 LPDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLL 38 (103)
T ss_pred CCEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHH
T ss_conf 96289999798989999889999879887891699654