HHsearch alignment for GI: 255764476 and conserved domain: cd00130

>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=96.94  E-value=0.011  Score=36.36  Aligned_cols=38  Identities=13%  Similarity=0.115  Sum_probs=27.6

Q ss_pred             CCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCH
Q ss_conf             08959998489808985368885509997896049987
Q gi|255764476|r  315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN  352 (792)
Q Consensus       315 l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~  352 (792)
T Consensus         1 ~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~   38 (103)
T cd00130           1 LPDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLL   38 (103)
T ss_pred             CCEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHH
T ss_conf             96289999798989999889999879887891699654